Citrus Sinensis ID: 042119

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280------
Protein Sequence
MASLRSLSCESQIPAELLIASVMQIHASISKLESLKPSKQVNSIFSRLVKLCTIPSSIDITALPQEVQKMRESLIVLCGRAEGLLELEFATFLTKIPQPLNNLSLFPYYGNYVKLSKLEYTILSENGVVQPKKVAFVGSGPMPLTSIIMAKHHLTSTHFDNFDIDEAANDVARSIVASDAEFEGRMKFLTRDIMEVKEQLGEYDCIFLAALVGMSKEEKLTILGHIRKYMKDGGILLVRSAKGARAFLYPVVVEHDLLDFEVLSAVHPNDDVINSVVLVRNSQGYL
Secondary Structure (PSIPRED)
ccccccccccccccHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHcccccccHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccHHHHHHHHHHHHHHHHHcccccccEEEEEccccccHHHHHHHHHcccccEEEEEEccHHHHHHHHHHHHHccccccccEEEEcccccHHHHcccccEEEEcccccccHHHHHHHHHHHHHHccccEEEEEEcccHHHHHcccccccccccccEEEEEEccccccccEEEEEEEccccc
Secondary Structure Prediction (SSPRO)
cHHHHHHHHHcccHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHccccccccHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHccccHHHHHHHHHHHHHHHHHcccccccEEEEEccccccHHHHHHHHHcccccEEEcccccHHHHHHHHHHHHHcccHcccEEEEEccHccccHHHHcccEEEEEEEccccHHHHHHHHHHHHHHcccccEEEEEccccHHHHccccccHHHccccEEEEEEcccccEEEEEEEEEcccccc
Coil and Loop (DISEMBL)
maslrslscesqIPAELLIASVMQIHASISKleslkpskqvNSIFSRLVKLctipssiditaLPQEVQKMRESLIVLCGRAEGLLELEFATFltkipqplnnlslfpyygnyvkLSKLEYTILsengvvqpkkvafvgsgpmpltsIIMAKhhltsthfdnfdideAANDVARSIVASDAEFEGRMKFLTRDIMEVKEQLGEYDCIFLAALVGMSKEEKLTILGHIRKYMKDGGILLVRSakgaraflYPVVVEHDLLDFEvlsavhpnddviNSVVLVRNSQGYL
Flexible Loop (DISEMBL)
MASLRSLSCESQIPAELLIASVMQIHASISkleslkpskQVNSIFSRLVKLCTIPSSIDITALPQEVQKMRESLIVLCGRAEGLLELEFATFLTKIPQPLNNLSLFPYYGNYVKLSKLEYTILSENGVVQPKKVAFVGSGPMPLTSIIMAKHHLTSTHFDNFDIDEAANDVARSIVASDAEFEGRMKFLTRDIMEVKEQLGEYDCIFLAALVGMSKEEKLTILGHIRKYMKDGGILLVRSAKGARAFLYPVVVEHDLLDFEVLSAvhpnddviNSVVLVRNSQGYL
Low Complexity Region (SEG)
MASLRSLSCESQIPAELLIASVMQIHASISKLESLKPSKQVNSIFSRLVKLCTIPSSIDITALPQEVQKMRESLIVLCGRAEGLLELEFATFLTKIPQPLNNLSLFPYYGNYVKLSKLEYTILSENGVVQPKKVAFVGSGPMPLTSIIMAKHHLTSTHFDNFDIDEAANDVARSIVASDAEFEGRMKFLTRDIMEVKEQLGEYDCIFLAALVGMSKEEKLTILGHIRKYMKDGGILLVRSAKGARAFLYPVVVEHDLLDFEVLSAVHPNDDVINSVVLVRNSQGYL
Disordered region (IsUnstruct)
************IPAELLIASVMQIHASISKLE*****KQVNSIFSRLVKLCTIPSSIDITALPQEVQKMRESLIVLCGRAEGLLELEFATFLTKIPQPLNNLSLFPYYGNYVKLSKLEYTILSENGVVQPKKVAFVGSGPMPLTSIIMAKHHLTSTHFDNFDIDEAANDVARSIVASDAEFEGRMKFLTRDIMEVKEQLGEYDCIFLAALVGMSKEEKLTILGHIRKYMKDGGILLVRSAKGARAFLYPVVVEHDLLDFEVLSAVHPNDDVINSVVLVR******
Disordered Region (DISOPRED)
**************AELLIASVMQIHASISKLESLKPSKQVNSIFSRLVKLCTIPSSIDITALPQEVQKMRESLIVLCGRAEGLLELEFATFLTKIPQPLNNLSLFPYYGNYVKLSKLEYTILSENGVVQPKKVAFVGSGPMPLTSIIMAKHHLTSTHFDNFDIDEAANDVARSIVASDAEFEGRMKFLTRDIMEVKEQLGEYDCIFLAALVGMSKEEKLTILGHIRKYMKDGGILLVRSAKGARAFLYPVVVEHDLLDFEVLSAVHPNDDVINSVVLVRNS****
Disordered Region (DISEMBL)
*********ESQIPAELLIASVMQIHASISKLESLKPSKQVNSIFSRLVKLCTIPSSIDITALPQEVQKMRESLIVLCGRAEGLLELEFATFLTKIPQPLNNLSLFPYYGNYVKLSKLEYTILSENGVVQPKKVAFVGSGPMPLTSIIMAKHHLTSTHFDNFDIDEAANDVARSIVASDAEFEGRMKFLTRDIMEVKEQLGEYDCIFLAALVGMSKEEKLTILGHIRKYMKDGGILLVRSAKGARAFLYPVVVEHDLLDFEVLSAVHPNDDVINSVVLVRNSQGYL
Disordered Region (DISPRO)
*********ESQIPAELLIASVMQIHASISKLESLKPSKQVNSIFSRLVKLCTIPSSIDITALPQEVQKMRESLIVLCGRAEGLLELEFATFLTKIPQPLNNLSLFPYYGNYVKLSKLEYTILSENGVVQPKKVAFVGSGPMPLTSIIMAKHHLTSTHFDNFDIDEAANDVARSIVASDAEFEGRMKFLTRDIMEVKEQLGEYDCIFLAALVGMSKEEKLTILGHIRKYMKDGGILLVRSAKGARAFLYPVVVEHDLLDFEVLSAVHPNDDVINSVVLVRNS****
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MASLRSLSCESQIPAELLIASVMQIHASISKLESLKPSKQVNSIFSRLVKLCTIPSSIDITALPQEVQKMRESLIVLCGRAEGLLELEFATFLTKIPQPLNNLSLFPYYGNYVKLSKLEYTILSENGVVQPKKVAFVGSGPMPLTSIIMAKHHLTSTHFDNFDIDEAANDVARSIVASDAEFEGRMKFLTRDIMEVKEQLGEYDCIFLAALVGMSKEEKLTILGHIRKYMKDGGILLVRSAKGARAFLYPVVVEHDLLDFEVLSAVHPNDDVINSVVLVRNSQGYL
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	286	2.2.26 [Sep-21-2011]
Q9XGI7	317	Nicotianamine synthase OS	N/A	no	0.919	0.829	0.513	1e-76
Q9FKT9	320	Nicotianamine synthase 2	yes	no	0.958	0.856	0.494	2e-73
O80483	320	Nicotianamine synthase 3	no	no	0.923	0.825	0.524	9e-73
Q9FF79	320	Nicotianamine synthase 1	no	no	0.958	0.856	0.475	2e-72
Q9C7X5	324	Probable nicotianamine sy	no	no	0.916	0.808	0.505	9e-72
Q9ZQV7	335	Probable nicotianamine sy	N/A	no	0.968	0.826	0.444	7e-71
Q9ZQV8	335	Probable nicotianamine sy	N/A	no	0.930	0.794	0.460	8e-70
Q9XFB6	329	Nicotianamine synthase 8	N/A	no	0.937	0.814	0.448	6e-68
Q10MI9	326	Nicotianamine synthase 2	yes	no	0.930	0.815	0.474	1e-67
Q0DSH9	332	Nicotianamine synthase 1	no	no	0.923	0.795	0.477	1e-67

>sp|Q9XGI7|NAS_SOLLC Nicotianamine synthase OS=Solanum lycopersicum GN=CHLN PE=2 SV=1

 Score =  286 bits (731), Expect = 1e-76,   Method: Compositional matrix adjust.
 Identities = 135/263 (51%), Positives = 188/263 (71%)

Query: 18  LIASVMQIHASISKLESLKPSKQVNSIFSRLVKLCTIPSSIDITALPQEVQKMRESLIVL 77
           ++  V +++  IS+LE+L PSK VN +F+ LV  C  P+ ID++ L Q++Q++R  LI L
Sbjct: 9   VVEKVCELYEQISRLENLSPSKDVNVLFTDLVHTCMPPNPIDVSKLCQKIQEIRSHLIKL 68

Query: 78  CGRAEGLLELEFATFLTKIPQPLNNLSLFPYYGNYVKLSKLEYTILSENGVVQPKKVAFV 137
           CG+AEGLLE  F+  L+    PL +L +FPY+ NY+KLS LEY IL++N    PKK+AF+
Sbjct: 69  CGQAEGLLESHFSKILSSYENPLQHLHIFPYFDNYIKLSLLEYNILTKNTTNIPKKIAFI 128

Query: 138 GSGPMPLTSIIMAKHHLTSTHFDNFDIDEAANDVARSIVASDAEFEGRMKFLTRDIMEVK 197
           GSGP+PLTS+++A  HL +T F N+DID  AN +A ++VA+D +   RM F T D+M+V 
Sbjct: 129 GSGPLPLTSLVLATKHLKTTCFHNYDIDVDANFMASALVAADPDMSSRMTFHTADVMDVT 188

Query: 198 EQLGEYDCIFLAALVGMSKEEKLTILGHIRKYMKDGGILLVRSAKGARAFLYPVVVEHDL 257
             L +YD +FLAALVGM KE+K+ ++ H+ KYM  G  L++RSA GARAFLYPV+   DL
Sbjct: 189 CALKDYDVVFLAALVGMDKEDKVKVVDHLAKYMSPGATLMLRSAHGARAFLYPVLDPRDL 248

Query: 258 LDFEVLSAVHPNDDVINSVVLVR 280
             FEVLS  HP D+VINSV++ R
Sbjct: 249 RGFEVLSVYHPTDEVINSVIIAR 271

Synthesizes nicotianamine, a polyamine that serves as a sensor for the physiological iron status within the plant, and/or might be involved in the transport of iron.
Solanum lycopersicum (taxid: 4081)
EC: 2EC: .EC: 5EC: .EC: 1EC: .EC: 4EC: 3

>sp|Q9FKT9|NAS2_ARATH Nicotianamine synthase 2 OS=Arabidopsis thaliana GN=NAS2 PE=2 SV=1

 Score =  276 bits (705), Expect = 2e-73,   Method: Compositional matrix adjust.
 Identities = 139/281 (49%), Positives = 191/281 (67%), Gaps = 7/281 (2%)

Query: 7   LSCESQIPAELLIASVMQIHASISKLESLKPSKQVNSIFSRLVKLC-TIPSSIDITALPQ 65
           ++CE+     L++  +M ++  IS LESLKPSK V+++F +LV  C    ++ID+T +  
Sbjct: 1   MACENN----LVVKQIMDLYNQISNLESLKPSKNVDTLFRQLVSTCLPTDTNIDVTEIHD 56

Query: 66  E-VQKMRESLIVLCGRAEGLLELEFATFLTKI-PQPLNNLSLFPYYGNYVKLSKLEYTIL 123
           E V+ MR  LI LCG AEG LE  F+  L      PLN+L +FPYY NY+KL KLE+ +L
Sbjct: 57  EKVKDMRSHLIKLCGEAEGYLEQHFSAILGSFEDNPLNHLHIFPYYNNYLKLGKLEFDLL 116

Query: 124 SENGVVQPKKVAFVGSGPMPLTSIIMAKHHLTSTHFDNFDIDEAANDVARSIVASDAEFE 183
           S++    P KVAF+GSGPMPLTSI++AK HL +T F NFDID  AN +A ++V+ D++  
Sbjct: 117 SQHTTHVPTKVAFIGSGPMPLTSIVLAKFHLPNTTFHNFDIDSHANTLASNLVSRDSDLS 176

Query: 184 GRMKFLTRDIMEVKEQLGEYDCIFLAALVGMSKEEKLTILGHIRKYMKDGGILLVRSAKG 243
            RM F T D++  KE L +YD +FLAALVGM KE K+  + H+ K+M  G ++++RSA G
Sbjct: 177 KRMIFHTTDVLNAKEGLDQYDVVFLAALVGMDKESKVKAIEHLEKHMAPGAVVMLRSAHG 236

Query: 244 ARAFLYPVVVEHDLLDFEVLSAVHPNDDVINSVVLVRNSQG 284
            RAFLYP+V   DL  FEVL+  HP+DDV+NSVV+ R   G
Sbjct: 237 LRAFLYPIVDSCDLKGFEVLTIYHPSDDVVNSVVIARKLGG 277

Synthesizes nicotianamine, a polyamine which serves as a sensor for the physiological iron status within the plant, and/or might be involved in the transport of iron.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 5

EC: .

EC: 1

EC: .

EC: 4

EC: 3

>sp|O80483|NAS3_ARATH Nicotianamine synthase 3 OS=Arabidopsis thaliana GN=NAS3 PE=2 SV=1

 Score =  273 bits (698), Expect = 9e-73,   Method: Compositional matrix adjust.
 Identities = 141/269 (52%), Positives = 192/269 (71%), Gaps = 5/269 (1%)

Query: 16  ELLIASVMQIHASISKLESLKPSKQVNSIFSRLVKLCTIPS-SIDITALPQEVQKMRESL 74
           E L+ ++  ++  ISKLESLKPS+ VN +F +LV  C  P+ +ID+T +   VQ++R +L
Sbjct: 6   EQLVQTICDLYEKISKLESLKPSEDVNILFKQLVSTCIPPNPNIDVTKMCDRVQEIRLNL 65

Query: 75  IVLCGRAEGLLELEFATFLTKI-PQPLNNLSLFPYYGNYVKLSKLEYTILSEN--GVVQP 131
           I +CG AEG LE  F++ LT     PL++L++FPYY NY+KL KLE+ +L +N  G V P
Sbjct: 66  IKICGLAEGHLENHFSSILTSYQDNPLHHLNIFPYYNNYLKLGKLEFDLLEQNLNGFV-P 124

Query: 132 KKVAFVGSGPMPLTSIIMAKHHLTSTHFDNFDIDEAANDVARSIVASDAEFEGRMKFLTR 191
           K VAF+GSGP+PLTSI++A  HL  T F NFDID +AN +A  +V+SD +   RM F T 
Sbjct: 125 KSVAFIGSGPLPLTSIVLASFHLKDTIFHNFDIDPSANSLASLLVSSDPDISQRMFFHTV 184

Query: 192 DIMEVKEQLGEYDCIFLAALVGMSKEEKLTILGHIRKYMKDGGILLVRSAKGARAFLYPV 251
           DIM+V E L  +D +FLAALVGM+KEEK+ ++ H++K+M  G +L++RSA G RAFLYP+
Sbjct: 185 DIMDVTESLKSFDVVFLAALVGMNKEEKVKVIEHLQKHMAPGAVLMLRSAHGPRAFLYPI 244

Query: 252 VVEHDLLDFEVLSAVHPNDDVINSVVLVR 280
           V   DL  FEVLS  HP DDVINSVV+ +
Sbjct: 245 VEPCDLQGFEVLSIYHPTDDVINSVVISK 273

Synthesizes nicotianamine, a polyamine which serves as a sensor for the physiological iron status within the plant, and/or might be involved in the transport of iron.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 5

EC: .

EC: 1

EC: .

EC: 4

EC: 3

>sp|Q9FF79|NAS1_ARATH Nicotianamine synthase 1 OS=Arabidopsis thaliana GN=NAS1 PE=2 SV=1

 Score =  273 bits (697), Expect = 2e-72,   Method: Compositional matrix adjust.
 Identities = 134/282 (47%), Positives = 193/282 (68%), Gaps = 8/282 (2%)

Query: 7   LSCESQIPAELLIASVMQIHASISKLESLKPSKQVNSIFSRLVKLC-TIPSSIDITALPQ 65
           ++C++     L++  ++ ++  ISKL+SLKPSK V+++F +LV  C    ++ID+T + +
Sbjct: 1   MACQNN----LVVKQIIDLYDQISKLKSLKPSKNVDTLFGQLVSTCLPTDTNIDVTNMCE 56

Query: 66  EVQKMRESLIVLCGRAEGLLELEFATFLTKIPQ---PLNNLSLFPYYGNYVKLSKLEYTI 122
           EV+ MR +LI LCG AEG LE  F+T L  + +   PL++L +FPYY NY+KL KLE+ +
Sbjct: 57  EVKDMRANLIKLCGEAEGYLEQHFSTILGSLQEDQNPLDHLHIFPYYSNYLKLGKLEFDL 116

Query: 123 LSENGVVQPKKVAFVGSGPMPLTSIIMAKHHLTSTHFDNFDIDEAANDVARSIVASDAEF 182
           LS++    P K+AFVGSGPMPLTSI++AK HL +T F NFDID  AN +A ++V+ D + 
Sbjct: 117 LSQHSSHVPTKIAFVGSGPMPLTSIVLAKFHLPNTTFHNFDIDSHANTLASNLVSRDPDL 176

Query: 183 EGRMKFLTRDIMEVKEQLGEYDCIFLAALVGMSKEEKLTILGHIRKYMKDGGILLVRSAK 242
             RM F T D++   E L +YD +FLAALVGM KE K+  + H+ K+M  G +L++RSA 
Sbjct: 177 SKRMIFHTTDVLNATEGLDQYDVVFLAALVGMDKESKVKAIEHLEKHMAPGAVLMLRSAH 236

Query: 243 GARAFLYPVVVEHDLLDFEVLSAVHPNDDVINSVVLVRNSQG 284
             RAFLYP+V   DL  F++L+  HP DDV+NSVV+ R   G
Sbjct: 237 ALRAFLYPIVDSSDLKGFQLLTIYHPTDDVVNSVVIARKLGG 278

Synthesizes nicotianamine, a polyamine which serves as a sensor for the physiological iron status within the plant, and/or might be involved in the transport of iron.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 5

EC: .

EC: 1

EC: .

EC: 4

EC: 3

>sp|Q9C7X5|NAS4_ARATH Probable nicotianamine synthase 4 OS=Arabidopsis thaliana GN=NAS4 PE=2 SV=1

 Score =  270 bits (690), Expect = 9e-72,   Method: Compositional matrix adjust.
 Identities = 135/267 (50%), Positives = 190/267 (71%), Gaps = 5/267 (1%)

Query: 18  LIASVMQIHASISKLESLKPSKQVNSIFSRLVKLCTIPS-SIDITALPQEVQKMRESLIV 76
           L+  +  ++  ISKLE+LKP + V+++F +LV  C  P+ +ID+T + + +Q+MR +LI 
Sbjct: 9   LVNKICDLYEKISKLETLKPCEDVDTLFKQLVSTCIPPNPNIDVTKMSENIQEMRSNLIK 68

Query: 77  LCGRAEGLLELEFATFLTKIP-QPLNNLSLFPYYGNYVKLSKLEYTILSEN--GVVQPKK 133
           +CG AEG LE  F++ LT     PL++L+LFPYY NY+KLSKLE+ +L +N  G V P+ 
Sbjct: 69  ICGEAEGYLEHHFSSILTSFEDNPLHHLNLFPYYNNYLKLSKLEFDLLEQNLNGFV-PRT 127

Query: 134 VAFVGSGPMPLTSIIMAKHHLTSTHFDNFDIDEAANDVARSIVASDAEFEGRMKFLTRDI 193
           VAF+GSGP+PLTS+++A  HL  + F NFDID +AN VA  +V+SD +   RM F T DI
Sbjct: 128 VAFIGSGPLPLTSVVLASSHLKDSIFHNFDIDPSANMVAARLVSSDPDLSQRMFFHTVDI 187

Query: 194 MEVKEQLGEYDCIFLAALVGMSKEEKLTILGHIRKYMKDGGILLVRSAKGARAFLYPVVV 253
           M+V E L  +D +FLAALVGM K+EK+ ++ H+ K+M  G +L++RSA G RAFLYP+V 
Sbjct: 188 MDVTESLKGFDVVFLAALVGMDKKEKVKVVEHLEKHMSPGALLMLRSAHGPRAFLYPIVE 247

Query: 254 EHDLLDFEVLSAVHPNDDVINSVVLVR 280
             DL  FEVLS  HP D+VINS+V+ R
Sbjct: 248 PCDLEGFEVLSVYHPTDEVINSIVISR 274

Synthesizes nicotianamine, a polyamine which serves as a sensor for the physiological iron status within the plant, and/or might be involved in the transport of iron.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 5

EC: .

EC: 1

EC: .

EC: 4

EC: 3

>sp|Q9ZQV7|NAS2_HORVU Probable nicotianamine synthase 2 OS=Hordeum vulgare GN=NAS2 PE=2 SV=1

 Score =  267 bits (682), Expect = 7e-71,   Method: Compositional matrix adjust.
 Identities = 125/281 (44%), Positives = 185/281 (65%), Gaps = 4/281 (1%)

Query: 7   LSCESQIPAELLIASVMQIHASISKLESLKPSKQVNSIFSRLVKLCTIPSSIDITALPQE 66
           ++ ++    + L+  +  +HA+I+KL SL PS  V+++F+ LV  C  PS +D+T L  E
Sbjct: 1   MAAQNNQEVDALVEKITGLHAAIAKLPSLSPSPDVDALFTELVTACVPPSPVDVTKLGPE 60

Query: 67  VQKMRESLIVLCGRAEGLLELEFATFLTKIPQPLNNLSLFPYYGNYVKLSKLEYTILSE- 125
            Q+MRE LI LC  AEG LE  ++  L    +PL++L +FPYY NY+ LSKLEY +L+  
Sbjct: 61  AQEMREGLIRLCSEAEGKLEAHYSDMLAAFDKPLDHLGMFPYYNNYINLSKLEYELLARY 120

Query: 126 -NGVVQPKKVAFVGSGPMPLTSIIMAKHHLTSTHFDNFDIDEAANDVARSIVASDAEFEG 184
             G  +P +VAF+GSGP+P +S ++A  HL  T FDN+D+  AAND A  +  +D +   
Sbjct: 121 VPGGYRPARVAFIGSGPLPFSSFVLAARHLPDTMFDNYDLCGAANDRASKLFRADRDVGA 180

Query: 185 RMKFLTRDIMEVKEQLGEYDCIFLAALVGMSKEEKLTILGHIRKYMKDGGILLVRSAKGA 244
           RM F T D+ ++  +L +YD +FLAALVGM+ E+K  ++ H+  +M DG  L+VRSA GA
Sbjct: 181 RMSFHTADVADLAGELAKYDVVFLAALVGMAAEDKAKVIAHLGAHMADGAALVVRSAHGA 240

Query: 245 RAFLYPVVVEHDL--LDFEVLSAVHPNDDVINSVVLVRNSQ 283
           R FLYP+V   D+    FEVL+  HP+DDV+NSV++ + S+
Sbjct: 241 RGFLYPIVDPQDIGRGGFEVLAVCHPDDDVVNSVIIAQKSK 281

Synthesizes nicotianamine, a polyamine that is the first intermediate in the synthesis of the phytosiderophores of the mugineic acid type found in gramineae which serves as a sensor for the physiological iron status within the plant, and/or might be involved in the transport of iron.

Hordeum vulgare (taxid: 4513)

EC: 2

EC: .

EC: 5

EC: .

EC: 1

EC: .

EC: 4

EC: 3

>sp|Q9ZQV8|NAS3_HORVU Probable nicotianamine synthase 3 OS=Hordeum vulgare GN=NAS3 PE=2 SV=1

 Score =  263 bits (673), Expect = 8e-70,   Method: Compositional matrix adjust.
 Identities = 124/269 (46%), Positives = 178/269 (66%), Gaps = 3/269 (1%)

Query: 18  LIASVMQIHASISKLESLKPSKQVNSIFSRLVKLCTIPSSIDITALPQEVQKMRESLIVL 77
           L+  +  +HA+I+KL SL PS  V+++F+ LV  C  PS +D+T L  E Q+MRE LI L
Sbjct: 13  LVEKITGLHAAIAKLPSLSPSPDVDALFTELVTACVPPSPVDVTKLGPEAQEMREGLIRL 72

Query: 78  CGRAEGLLELEFATFLTKIPQPLNNLSLFPYYGNYVKLSKLEYTILSEN-GVVQPKKVAF 136
           C  AEG LE  ++  L     PL++L +FPYY NY+ LSKLEY +L+      +P +VAF
Sbjct: 73  CSEAEGKLEAHYSDMLAAFDNPLDHLGIFPYYSNYINLSKLEYELLARYVRRHRPARVAF 132

Query: 137 VGSGPMPLTSIIMAKHHLTSTHFDNFDIDEAANDVARSIVASDAEFEGRMKFLTRDIMEV 196
           +GSGP+P +S ++A  HL  T FDN+D+  AAND A  +  +D +   RM F T D+ ++
Sbjct: 133 IGSGPLPFSSFVLAARHLPDTMFDNYDLCGAANDRASKLFRADTDVGARMSFHTADVADL 192

Query: 197 KEQLGEYDCIFLAALVGMSKEEKLTILGHIRKYMKDGGILLVRSAKGARAFLYPVVVEHD 256
             +L +YD +FLAALVGM+ E+K  ++ H+  +M DG  L+VRSA GAR FLYP+V   D
Sbjct: 193 ASELAKYDVVFLAALVGMAAEDKAKVIAHLGAHMADGAALVVRSAHGARGFLYPIVDPQD 252

Query: 257 L--LDFEVLSAVHPNDDVINSVVLVRNSQ 283
           +    FEVL+  HP+DDV+NSV++ + S+
Sbjct: 253 IGRGGFEVLAVCHPDDDVVNSVIIAQKSK 281

Synthesizes nicotianamine, a polyamine that is the first intermediate in the synthesis of the phytosiderophores of the mugineic acid type found in gramineae which serves as a sensor for the physiological iron status within the plant, and/or might be involved in the transport of iron.

Hordeum vulgare (taxid: 4513)

EC: 2

EC: .

EC: 5

EC: .

EC: 1

EC: .

EC: 4

EC: 3

>sp|Q9XFB6|NAS8_HORVU Nicotianamine synthase 8 OS=Hordeum vulgare GN=NAS8 PE=1 SV=1

 Score =  257 bits (657), Expect = 6e-68,   Method: Compositional matrix adjust.
 Identities = 122/272 (44%), Positives = 175/272 (64%), Gaps = 4/272 (1%)

Query: 16  ELLIASVMQIHASISKLESLKPSKQVNSIFSRLVKLCTIPSSIDITALPQEVQKMRESLI 75
           + L+  +  +HA+I+KL SL PS  V+++F+ LV  C  PS +D+T L  E Q+MRE LI
Sbjct: 9   DALVQKITGLHAAIAKLPSLSPSPDVDALFTDLVTACVPPSPVDVTKLGSEAQEMREGLI 68

Query: 76  VLCGRAEGLLELEFATFLTKIPQPLNNLSLFPYYGNYVKLSKLEYTILSE--NGVVQPKK 133
            LC  AEG LE  ++  L     PL++L +FPYY NY+ LSKLEY +L+    G  +P +
Sbjct: 69  RLCSEAEGKLEAHYSDMLAAFDNPLDHLGMFPYYSNYINLSKLEYELLARYVPGRHRPAR 128

Query: 134 VAFVGSGPMPLTSIIMAKHHLTSTHFDNFDIDEAANDVARSIVASDAEFEGRMKFLTRDI 193
           VAF+GSGP+P +S ++A  HL    FDN+D+  AAND A  +  +D +   RM F T D+
Sbjct: 129 VAFIGSGPLPFSSYVLAARHLPDAMFDNYDLCSAANDRASKLFRADKDVGARMSFHTADV 188

Query: 194 MEVKEQLGEYDCIFLAALVGMSKEEKLTILGHIRKYMKDGGILLVRSAKGARAFLYPVVV 253
            ++  +L  YD +FLAALVGM+ E+K  ++ H+  +M DG  L+VRSA G   FLYP+V 
Sbjct: 189 ADLTGELAAYDVVFLAALVGMAAEDKTKVIAHLGAHMADGAALVVRSAHGHVGFLYPIVD 248

Query: 254 EHDL--LDFEVLSAVHPNDDVINSVVLVRNSQ 283
             D+    FEVL+  HP+DDV+NSV++   S+
Sbjct: 249 PQDIGRGGFEVLAVCHPDDDVVNSVIIAHKSK 280

Synthesizes nicotianamine, a polyamine that is the first intermediate in the synthesis of the phytosiderophores of the mugineic acid type found in gramineae which serve as a sensor for the physiological iron status within the plant, and/or might be involved in the transport of iron.

Hordeum vulgare (taxid: 4513)

EC: 2

EC: .

EC: 5

EC: .

EC: 1

EC: .

EC: 4

EC: 3

>sp|Q10MI9|NAS2_ORYSJ Nicotianamine synthase 2 OS=Oryza sativa subsp. japonica GN=NAS2 PE=2 SV=1

 Score =  256 bits (655), Expect = 1e-67,   Method: Compositional matrix adjust.
 Identities = 128/270 (47%), Positives = 174/270 (64%), Gaps = 4/270 (1%)

Query: 18  LIASVMQIHASISKLESLKPSKQVNSIFSRLVKLCTIPSSIDITALPQEVQKMRESLIVL 77
           L+  +  +HA+ISKL SL PS +V+++F+ LV  C   S +D+  L  E Q MRE LI L
Sbjct: 11  LVEKIAGLHAAISKLPSLSPSAEVDALFTDLVTACVPASPVDVAKLGPEAQAMREELIRL 70

Query: 78  CGRAEGLLELEFATFLTKIPQPLNNLSLFPYYGNYVKLSKLEYTILSEN-GVVQPKKVAF 136
           C  AEG LE  +A  L     PL++L+ FPYYGNYV LSKLEY +L      + P +VAF
Sbjct: 71  CSAAEGHLEAHYADMLAAFDNPLDHLARFPYYGNYVNLSKLEYDLLVRYVPGIAPTRVAF 130

Query: 137 VGSGPMPLTSIIMAKHHLTSTHFDNFDIDEAANDVARSIV-ASDAEFEGRMKFLTRDIME 195
           VGSGP+P +S+++A HHL    FDN+D   AAN+ AR +   +D     RM F T D+  
Sbjct: 131 VGSGPLPFSSLVLAAHHLPDAVFDNYDRCGAANERARRLFRGADEGLGARMAFHTADVAT 190

Query: 196 VKEQLGEYDCIFLAALVGMSKEEKLTILGHIRKYMKDGGILLVRSAKGARAFLYPVVVEH 255
           +  +LG YD +FLAALVGM+ EEK  ++ H+  +M DG  L+VRSA GAR FLYP+V   
Sbjct: 191 LTGELGAYDVVFLAALVGMAAEEKAGVIAHLGAHMADGAALVVRSAHGARGFLYPIVDLE 250

Query: 256 DLL--DFEVLSAVHPNDDVINSVVLVRNSQ 283
           D+    F+VL+  HP+D+VINSV++ R + 
Sbjct: 251 DIRRGGFDVLAVYHPDDEVINSVIVARKAD 280

Synthesizes nicotianamine, a polyamine that is the first intermediate in the synthesis of the phytosiderophores of the mugineic acid type found in gramineae which serve as a sensor for the physiological iron status within the plant, and/or might be involved in the transport of iron.

Oryza sativa subsp. japonica (taxid: 39947)

EC: 2

EC: .

EC: 5

EC: .

EC: 1

EC: .

EC: 4

EC: 3

>sp|Q0DSH9|NAS1_ORYSJ Nicotianamine synthase 1 OS=Oryza sativa subsp. japonica GN=NAS1 PE=2 SV=1

 Score =  256 bits (654), Expect = 1e-67,   Method: Compositional matrix adjust.
 Identities = 128/268 (47%), Positives = 172/268 (64%), Gaps = 4/268 (1%)

Query: 18  LIASVMQIHASISKLESLKPSKQVNSIFSRLVKLCTIPSSIDITALPQEVQKMRESLIVL 77
           L+  +  +HA+ISKL SL PS +V+++F+ LV  C   S +D+  L  E Q MRE LI L
Sbjct: 11  LVEKIAGLHAAISKLPSLSPSAEVDALFTDLVTACVPASPVDVAKLGPEAQAMREELIRL 70

Query: 78  CGRAEGLLELEFATFLTKIPQPLNNLSLFPYYGNYVKLSKLEYTILSEN-GVVQPKKVAF 136
           C  AEG LE  +A  L     PL++L+ FPYYGNYV LSKLEY +L      + P +VAF
Sbjct: 71  CSAAEGHLEAHYADMLAAFDNPLDHLARFPYYGNYVNLSKLEYDLLVRYVPGIAPTRVAF 130

Query: 137 VGSGPMPLTSIIMAKHHLTSTHFDNFDIDEAANDVARSIV-ASDAEFEGRMKFLTRDIME 195
           VGSGP+P +S+++A HHL    FDN+D   AAN+ AR +   +D     RM F T D+  
Sbjct: 131 VGSGPLPFSSLVLAAHHLPDAVFDNYDRCGAANERARRLFRGADEGLGARMAFHTADVAT 190

Query: 196 VKEQLGEYDCIFLAALVGMSKEEKLTILGHIRKYMKDGGILLVRSAKGARAFLYPVVVEH 255
           +  +LG YD +FLAALVGM+ EEK  ++ H+  +M DG  L+VRSA GAR FLYP+V   
Sbjct: 191 LTGELGAYDVVFLAALVGMAAEEKAGVIAHLGAHMADGAALVVRSAHGARGFLYPIVDPE 250

Query: 256 DLL--DFEVLSAVHPNDDVINSVVLVRN 281
           D+    F+VL+  HP D+VINSV++ R 
Sbjct: 251 DVRRGGFDVLAVCHPEDEVINSVIVARK 278

Synthesizes nicotianamine, a polyamine that is the first intermediate in the synthesis of the phytosiderophores of the mugineic acid type found in gramineae which serve as a sensor for the physiological iron status within the plant, and/or might be involved in the transport of iron.

Oryza sativa subsp. japonica (taxid: 39947)

EC: 2

EC: .

EC: 5

EC: .

EC: 1

EC: .

EC: 4

EC: 3

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	286
255585340	319	Nicotianamine synthase, putative [Ricinu	0.979	0.877	0.775	1e-126
224131702	284	predicted protein [Populus trichocarpa]	0.979	0.985	0.789	1e-125
225446092	284	PREDICTED: nicotianamine synthase isofor	0.979	0.985	0.746	1e-122
356528734	286	PREDICTED: nicotianamine synthase-like [	0.993	0.993	0.699	1e-116
255585344	669	nicotianamine synthase, putative [Ricinu	0.986	0.421	0.705	1e-114
388512831	284	unknown [Medicago truncatula]	0.993	1.0	0.669	1e-112
449500282	285	PREDICTED: nicotianamine synthase-like [	0.979	0.982	0.646	1e-108
449457247	289	PREDICTED: nicotianamine synthase-like [	0.979	0.968	0.646	1e-108
147778256	308	hypothetical protein VITISV_020491 [Viti	0.926	0.860	0.577	1e-83
225450591	308	PREDICTED: nicotianamine synthase [Vitis	0.926	0.860	0.573	4e-83

>gi|255585340|ref|XP_002533367.1| Nicotianamine synthase, putative [Ricinus communis] gi|223526789|gb|EEF29012.1| Nicotianamine synthase, putative [Ricinus communis]

 Score =  457 bits (1175), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 217/280 (77%), Positives = 250/280 (89%)

Query: 1   MASLRSLSCESQIPAELLIASVMQIHASISKLESLKPSKQVNSIFSRLVKLCTIPSSIDI 60
           MASL++ + +SQIPAELLIAS+ QIH +ISKL+SL+PSKQVN +FS LVKLC IPSSIDI
Sbjct: 36  MASLQNTNFDSQIPAELLIASITQIHGAISKLDSLRPSKQVNGLFSHLVKLCIIPSSIDI 95

Query: 61  TALPQEVQKMRESLIVLCGRAEGLLELEFATFLTKIPQPLNNLSLFPYYGNYVKLSKLEY 120
           T+LP+E Q+MR+SLIVLCGRAEGLLELEFATFL KIPQPL N++LFPYY NYVKL+ LEY
Sbjct: 96  TSLPEEAQEMRKSLIVLCGRAEGLLELEFATFLIKIPQPLANVNLFPYYANYVKLANLEY 155

Query: 121 TILSENGVVQPKKVAFVGSGPMPLTSIIMAKHHLTSTHFDNFDIDEAANDVARSIVASDA 180
           +ILSENG+VQPKKVAFVGSGPMPLTSI+MA HHL +THFDNFDIDEAANDVAR IV SD+
Sbjct: 156 SILSENGIVQPKKVAFVGSGPMPLTSIVMATHHLRATHFDNFDIDEAANDVARKIVGSDS 215

Query: 181 EFEGRMKFLTRDIMEVKEQLGEYDCIFLAALVGMSKEEKLTILGHIRKYMKDGGILLVRS 240
           + E RMKF T D+MEVKE+L EYDCIFLAALVGMSKEEK+ ILGH+RKYMK+GGILLVRS
Sbjct: 216 DLEKRMKFETCDVMEVKEKLREYDCIFLAALVGMSKEEKVKILGHVRKYMKEGGILLVRS 275

Query: 241 AKGARAFLYPVVVEHDLLDFEVLSAVHPNDDVINSVVLVR 280
           A GARAFLYPV+ + DL+ F+VLS  HP +DVINSV+L R
Sbjct: 276 ANGARAFLYPVIDDKDLVGFDVLSIFHPTNDVINSVILAR 315

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224131702|ref|XP_002328087.1| predicted protein [Populus trichocarpa] gi|222837602|gb|EEE75967.1| predicted protein [Populus trichocarpa]

 Score =  452 bits (1164), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 221/280 (78%), Positives = 245/280 (87%)

Query: 1   MASLRSLSCESQIPAELLIASVMQIHASISKLESLKPSKQVNSIFSRLVKLCTIPSSIDI 60
           MA+L+  +CESQI  ELLIA V QIHASISKL SL+PSKQVNS+FS LVKLC +PSSIDI
Sbjct: 1   MAALQISNCESQISTELLIARVTQIHASISKLSSLRPSKQVNSLFSNLVKLCILPSSIDI 60

Query: 61  TALPQEVQKMRESLIVLCGRAEGLLELEFATFLTKIPQPLNNLSLFPYYGNYVKLSKLEY 120
           TALP+EVQ MRESLI LCG AEGLLELEFATFL+KI QPLNNL+LFPYYGNYVKL+ +EY
Sbjct: 61  TALPEEVQAMRESLINLCGHAEGLLELEFATFLSKIHQPLNNLNLFPYYGNYVKLANIEY 120

Query: 121 TILSENGVVQPKKVAFVGSGPMPLTSIIMAKHHLTSTHFDNFDIDEAANDVARSIVASDA 180
            IL+E+ V+QPKKVAFVGSGPMPLTS IMA HH+  THFDNFDIDEAANDVAR IVASD 
Sbjct: 121 RILNESVVLQPKKVAFVGSGPMPLTSFIMATHHMKFTHFDNFDIDEAANDVARQIVASDV 180

Query: 181 EFEGRMKFLTRDIMEVKEQLGEYDCIFLAALVGMSKEEKLTILGHIRKYMKDGGILLVRS 240
           E E RMKF T DIMEVKE+L EYDCIFLAALVGMSK +K+ ILGHIRKYMK+GG+LLVRS
Sbjct: 181 ELEKRMKFETGDIMEVKEKLSEYDCIFLAALVGMSKADKVKILGHIRKYMKEGGVLLVRS 240

Query: 241 AKGARAFLYPVVVEHDLLDFEVLSAVHPNDDVINSVVLVR 280
           AKGARAFLYPVV E D+L FE+LS  HP +DVINSVVL+R
Sbjct: 241 AKGARAFLYPVVEEQDVLGFELLSIFHPTNDVINSVVLLR 280

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225446092|ref|XP_002270091.1| PREDICTED: nicotianamine synthase isoform 1 [Vitis vinifera] gi|359485000|ref|XP_003633197.1| PREDICTED: nicotianamine synthase isoform 2 [Vitis vinifera] gi|147835105|emb|CAN70188.1| hypothetical protein VITISV_039081 [Vitis vinifera]

 Score =  442 bits (1138), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 209/280 (74%), Positives = 247/280 (88%)

Query: 1   MASLRSLSCESQIPAELLIASVMQIHASISKLESLKPSKQVNSIFSRLVKLCTIPSSIDI 60
           MASL+  S ++ +  ELLIA ++QIHA+I KLESL+PSKQVNS+F+ LVKLCT PSSIDI
Sbjct: 1   MASLQQSSLKTNVSTELLIARIVQIHANICKLESLRPSKQVNSLFTHLVKLCTPPSSIDI 60

Query: 61  TALPQEVQKMRESLIVLCGRAEGLLELEFATFLTKIPQPLNNLSLFPYYGNYVKLSKLEY 120
           TALP+E+Q +R+SLI LCGRAEGLLELEF+TFLT +PQ LNNL+LFPYYGNYVKL+ LEY
Sbjct: 61  TALPEEIQLIRQSLITLCGRAEGLLELEFSTFLTNVPQALNNLNLFPYYGNYVKLANLEY 120

Query: 121 TILSENGVVQPKKVAFVGSGPMPLTSIIMAKHHLTSTHFDNFDIDEAANDVARSIVASDA 180
            ILS+NGVVQPKKVAF+GSGP+PLT++IMA HH+ ST FDNFD+DE+AN VAR +VASDA
Sbjct: 121 RILSDNGVVQPKKVAFIGSGPLPLTTLIMATHHMKSTCFDNFDMDESANAVARQLVASDA 180

Query: 181 EFEGRMKFLTRDIMEVKEQLGEYDCIFLAALVGMSKEEKLTILGHIRKYMKDGGILLVRS 240
           E + R+KF TRDIMEV+++LGEYDCIFLAALVGMSKEEK+ ILGH+RKYMK+GG LLVRS
Sbjct: 181 ELQRRVKFETRDIMEVRDKLGEYDCIFLAALVGMSKEEKVKILGHVRKYMKEGGTLLVRS 240

Query: 241 AKGARAFLYPVVVEHDLLDFEVLSAVHPNDDVINSVVLVR 280
           AKGARAFLYPVV E DLL FEVL+  HP ++VINSVVL R
Sbjct: 241 AKGARAFLYPVVEEEDLLGFEVLTIFHPTNEVINSVVLAR 280

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356528734|ref|XP_003532954.1| PREDICTED: nicotianamine synthase-like [Glycine max]

 Score =  425 bits (1092), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 200/286 (69%), Positives = 243/286 (84%), Gaps = 2/286 (0%)

Query: 1   MASLRSLSC--ESQIPAELLIASVMQIHASISKLESLKPSKQVNSIFSRLVKLCTIPSSI 58
           MA+ +S++     QIP ELLI+ +MQ+HASISKLESL+P KQVNS F+ LVKLCT+PS+I
Sbjct: 1   MAAFQSINNIETQQIPPELLISQIMQLHASISKLESLRPCKQVNSHFTHLVKLCTLPSTI 60

Query: 59  DITALPQEVQKMRESLIVLCGRAEGLLELEFATFLTKIPQPLNNLSLFPYYGNYVKLSKL 118
           DI ALP+EVQ MR+SLI L G AEGLLELEF+TF++  P+P+ N++LFPYYGNYVKL+ +
Sbjct: 61  DIEALPKEVQDMRDSLINLSGHAEGLLELEFSTFISLTPEPMKNVTLFPYYGNYVKLANM 120

Query: 119 EYTILSENGVVQPKKVAFVGSGPMPLTSIIMAKHHLTSTHFDNFDIDEAANDVARSIVAS 178
           E  IL ENGV+ PKKVAFVGSGPMPLTSI+MA HH+ STHFDNFDIDE AN+VAR IVAS
Sbjct: 121 ESKILKENGVLSPKKVAFVGSGPMPLTSIVMATHHMESTHFDNFDIDEKANEVARKIVAS 180

Query: 179 DAEFEGRMKFLTRDIMEVKEQLGEYDCIFLAALVGMSKEEKLTILGHIRKYMKDGGILLV 238
           D+  E RMKF T+D+MEV+E+LG+YDCIFLAALVGMS+E K+ ILGHIRKYMK+GG LLV
Sbjct: 181 DSALEKRMKFETQDVMEVRERLGQYDCIFLAALVGMSREAKVKILGHIRKYMKEGGTLLV 240

Query: 239 RSAKGARAFLYPVVVEHDLLDFEVLSAVHPNDDVINSVVLVRNSQG 284
           RSAKGARAFLYP+V E D+++FEVL+  HP +DVINSVVL+R  + 
Sbjct: 241 RSAKGARAFLYPIVEERDMVNFEVLTIFHPTNDVINSVVLLRKPKA 286

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255585344|ref|XP_002533369.1| nicotianamine synthase, putative [Ricinus communis] gi|223526791|gb|EEF29014.1| nicotianamine synthase, putative [Ricinus communis]

 Score =  416 bits (1070), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 199/282 (70%), Positives = 236/282 (83%)

Query: 1   MASLRSLSCESQIPAELLIASVMQIHASISKLESLKPSKQVNSIFSRLVKLCTIPSSIDI 60
           MASL++ +  SQIPAE+ I  + QIH +ISKL+SL+PSKQVNS+FS LVKLC +PSSI+I
Sbjct: 1   MASLQNSNSGSQIPAEVFIPRIKQIHGAISKLDSLRPSKQVNSLFSHLVKLCILPSSINI 60

Query: 61  TALPQEVQKMRESLIVLCGRAEGLLELEFATFLTKIPQPLNNLSLFPYYGNYVKLSKLEY 120
           T+LP+E Q+MR+SLI LCGRAEGLLEL+FATFL K PQP N+L+LFPYYGNYVKL+ LEY
Sbjct: 61  TSLPKEAQEMRKSLIDLCGRAEGLLELDFATFLIKSPQPFNHLNLFPYYGNYVKLANLEY 120

Query: 121 TILSENGVVQPKKVAFVGSGPMPLTSIIMAKHHLTSTHFDNFDIDEAANDVARSIVASDA 180
            IL E  ++QPKKVAF+GSG MPLTSIIMA HHL    FDNFDIDE+AN+ AR IV SD+
Sbjct: 121 RILGEISIIQPKKVAFIGSGAMPLTSIIMATHHLKLAQFDNFDIDESANEFARKIVGSDS 180

Query: 181 EFEGRMKFLTRDIMEVKEQLGEYDCIFLAALVGMSKEEKLTILGHIRKYMKDGGILLVRS 240
           + + RMKF T D+MEVKE+LGEYDCIFLAALVGM+KEEK+ I+ HIRKYMK+GGILLVRS
Sbjct: 181 DLQKRMKFETCDVMEVKEKLGEYDCIFLAALVGMTKEEKVKIIRHIRKYMKEGGILLVRS 240

Query: 241 AKGARAFLYPVVVEHDLLDFEVLSAVHPNDDVINSVVLVRNS 282
           A GARAFLYPVV   DL+ FE LS  HP +DVINSV+ +R S
Sbjct: 241 ANGARAFLYPVVDYKDLVGFEFLSIFHPTNDVINSVLSIRRS 282

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388512831|gb|AFK44477.1| unknown [Medicago truncatula]

 Score =  410 bits (1054), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 190/284 (66%), Positives = 234/284 (82%)

Query: 1   MASLRSLSCESQIPAELLIASVMQIHASISKLESLKPSKQVNSIFSRLVKLCTIPSSIDI 60
           MAS +S + E++IP ELLI+ +MQIH +ISKLESL+PSKQVN++ + LVKLC +PSSI+I
Sbjct: 1   MASFQSFNFETEIPQELLISQIMQIHTTISKLESLRPSKQVNTLLTHLVKLCILPSSIEI 60

Query: 61  TALPQEVQKMRESLIVLCGRAEGLLELEFATFLTKIPQPLNNLSLFPYYGNYVKLSKLEY 120
            ALPQEV+ MRESLI +CG+AEGLLELEF+TF+++ P P  NL+LFPYYGNYVKL+  E 
Sbjct: 61  EALPQEVKTMRESLIPICGKAEGLLELEFSTFISQTPNPAKNLTLFPYYGNYVKLANYEN 120

Query: 121 TILSENGVVQPKKVAFVGSGPMPLTSIIMAKHHLTSTHFDNFDIDEAANDVARSIVASDA 180
            IL ENGVV  KKVAF+GSGPMPL+SII+A HH+ STHFDNFDIDE AN+VA  IVASD 
Sbjct: 121 KILKENGVVDAKKVAFIGSGPMPLSSIILATHHMESTHFDNFDIDEKANEVASKIVASDK 180

Query: 181 EFEGRMKFLTRDIMEVKEQLGEYDCIFLAALVGMSKEEKLTILGHIRKYMKDGGILLVRS 240
             E RMKF+T+ IME KE+LG+YDCIFLAALVGM + EK+ ILGHI KYMK+G +LLVRS
Sbjct: 181 ALEKRMKFVTQYIMEAKERLGQYDCIFLAALVGMRRSEKVKILGHISKYMKEGSVLLVRS 240

Query: 241 AKGARAFLYPVVVEHDLLDFEVLSAVHPNDDVINSVVLVRNSQG 284
           AKG+RAFLYP+V E+D+++FE L+  HP DD INSV+  R  + 
Sbjct: 241 AKGSRAFLYPIVEENDMVNFEGLTIFHPTDDDINSVIFFRKPKA 284

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449500282|ref|XP_004161056.1| PREDICTED: nicotianamine synthase-like [Cucumis sativus]

 Score =  396 bits (1018), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 181/280 (64%), Positives = 231/280 (82%)

Query: 1   MASLRSLSCESQIPAELLIASVMQIHASISKLESLKPSKQVNSIFSRLVKLCTIPSSIDI 60
           MA+L+    E++I A  L+  ++ +H SISKLE+L+P K+VN++F+ LV LC +P SID+
Sbjct: 1   MAALQIHGTEAEISAAFLVDRIIDLHESISKLETLRPCKKVNNLFTNLVTLCILPCSIDV 60

Query: 61  TALPQEVQKMRESLIVLCGRAEGLLELEFATFLTKIPQPLNNLSLFPYYGNYVKLSKLEY 120
           + LP  +Q +RESLI+LCG+AEGLLELEF+T L+KIP+PLNNL+LFPYY NY+KL+ LE 
Sbjct: 61  STLPPNLQVIRESLIILCGQAEGLLELEFSTLLSKIPKPLNNLTLFPYYQNYIKLANLEN 120

Query: 121 TILSENGVVQPKKVAFVGSGPMPLTSIIMAKHHLTSTHFDNFDIDEAANDVARSIVASDA 180
            IL++NG+V PKKVAFVGSGP+PLTSIIMA  H+  THFDN+D+D  ANDVAR IV SD+
Sbjct: 121 KILNDNGIVNPKKVAFVGSGPLPLTSIIMAMQHMKGTHFDNYDVDSVANDVARKIVGSDS 180

Query: 181 EFEGRMKFLTRDIMEVKEQLGEYDCIFLAALVGMSKEEKLTILGHIRKYMKDGGILLVRS 240
           + EGRMKF + DI++VKE+LG YDC+FLAALVGM+KEEK+ I+ H+RKYMK+GGILLVRS
Sbjct: 181 DLEGRMKFFSSDIVDVKEELGGYDCVFLAALVGMNKEEKVKIIRHLRKYMKEGGILLVRS 240

Query: 241 AKGARAFLYPVVVEHDLLDFEVLSAVHPNDDVINSVVLVR 280
           AKG RAFLYPVV   DL+ FE+LS  HP DDV+NSV+L R
Sbjct: 241 AKGGRAFLYPVVEVEDLVGFEILSIFHPTDDVVNSVILTR 280

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449457247|ref|XP_004146360.1| PREDICTED: nicotianamine synthase-like [Cucumis sativus]

 Score =  395 bits (1016), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 181/280 (64%), Positives = 231/280 (82%)

Query: 1   MASLRSLSCESQIPAELLIASVMQIHASISKLESLKPSKQVNSIFSRLVKLCTIPSSIDI 60
           MA+L+    E++I A  L+  ++ +H SISKLE+L+P K+VN++F+ LV LC +P SID+
Sbjct: 1   MAALQIHGTEAEISAAFLVDRIIDLHESISKLETLRPCKKVNNLFTNLVTLCILPCSIDV 60

Query: 61  TALPQEVQKMRESLIVLCGRAEGLLELEFATFLTKIPQPLNNLSLFPYYGNYVKLSKLEY 120
           + LP  +Q +RESLI+LCG+AEGLLELEF+T L+KIP+PLNNL+LFPYY NY+KL+ LE 
Sbjct: 61  STLPPNLQVIRESLIILCGQAEGLLELEFSTLLSKIPKPLNNLTLFPYYQNYIKLANLEN 120

Query: 121 TILSENGVVQPKKVAFVGSGPMPLTSIIMAKHHLTSTHFDNFDIDEAANDVARSIVASDA 180
            IL++NG+V PKKVAFVGSGP+PLTSIIMA  H+  THFDN+D+D  ANDVAR IV SD+
Sbjct: 121 KILNDNGIVNPKKVAFVGSGPLPLTSIIMAMQHMKGTHFDNYDVDSVANDVARKIVGSDS 180

Query: 181 EFEGRMKFLTRDIMEVKEQLGEYDCIFLAALVGMSKEEKLTILGHIRKYMKDGGILLVRS 240
           + EGRMKF + DI++VKE+LG YDC+FLAALVGM+KEEK+ I+ H+RKYMK+GGILLVRS
Sbjct: 181 DLEGRMKFCSSDIVDVKEELGGYDCVFLAALVGMNKEEKVKIIRHLRKYMKEGGILLVRS 240

Query: 241 AKGARAFLYPVVVEHDLLDFEVLSAVHPNDDVINSVVLVR 280
           AKG RAFLYPVV   DL+ FE+LS  HP DDV+NSV+L R
Sbjct: 241 AKGGRAFLYPVVEVEDLVGFEILSIFHPTDDVVNSVILTR 280

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147778256|emb|CAN65138.1| hypothetical protein VITISV_020491 [Vitis vinifera]

 Score =  315 bits (808), Expect = 1e-83,   Method: Compositional matrix adjust.
 Identities = 153/265 (57%), Positives = 196/265 (73%)

Query: 16  ELLIASVMQIHASISKLESLKPSKQVNSIFSRLVKLCTIPSSIDITALPQEVQKMRESLI 75
           ELL+  V +++  IS+ ESLKPSK VN +F++LV+ C  PS ID+T L + VQ+MR  LI
Sbjct: 6   ELLVEKVCEMYEKISRFESLKPSKDVNMLFTQLVRTCMPPSPIDVTKLCKRVQEMRSKLI 65

Query: 76  VLCGRAEGLLELEFATFLTKIPQPLNNLSLFPYYGNYVKLSKLEYTILSENGVVQPKKVA 135
            LCG AEGLLE  F+T L     PL++L+LFPYY NY+KLS LE+T+LS+N    P K+A
Sbjct: 66  RLCGEAEGLLEGHFSTILGSYENPLDHLNLFPYYSNYLKLSLLEFTLLSQNCTHVPSKIA 125

Query: 136 FVGSGPMPLTSIIMAKHHLTSTHFDNFDIDEAANDVARSIVASDAEFEGRMKFLTRDIME 195
           FVGSGP+PLTSI++A +HLT+T F N+DID AAN +A  +VASD +F  RM F T DIM 
Sbjct: 126 FVGSGPLPLTSIVLASYHLTTTTFHNYDIDPAANSMAAHLVASDPDFSKRMLFHTTDIMN 185

Query: 196 VKEQLGEYDCIFLAALVGMSKEEKLTILGHIRKYMKDGGILLVRSAKGARAFLYPVVVEH 255
           V  +L EYD ++LAALVGM KEEK+ ++ H+ KYM  G +L++RSA GARAFLYPV+   
Sbjct: 186 VTNELKEYDVVYLAALVGMDKEEKIQVMDHLAKYMAPGALLMLRSAHGARAFLYPVIDPC 245

Query: 256 DLLDFEVLSAVHPNDDVINSVVLVR 280
           DL  FEVLS  HP D+VINSVV+ R
Sbjct: 246 DLRGFEVLSIFHPTDEVINSVVVAR 270

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225450591|ref|XP_002282175.1| PREDICTED: nicotianamine synthase [Vitis vinifera]

 Score =  313 bits (803), Expect = 4e-83,   Method: Compositional matrix adjust.
 Identities = 152/265 (57%), Positives = 197/265 (74%)

Query: 16  ELLIASVMQIHASISKLESLKPSKQVNSIFSRLVKLCTIPSSIDITALPQEVQKMRESLI 75
           ELL+  V +++  IS+LESLKPSK VN +F++LV+ C  PS ID+T L + VQ+MR  LI
Sbjct: 6   ELLVEKVCEMYEKISRLESLKPSKDVNMLFTQLVRTCMPPSPIDVTKLCKRVQEMRSKLI 65

Query: 76  VLCGRAEGLLELEFATFLTKIPQPLNNLSLFPYYGNYVKLSKLEYTILSENGVVQPKKVA 135
            LCG AEGLLE  F+T L     PL++L+LFPYY NY+KLS LE+T+LS+N    P K+A
Sbjct: 66  RLCGEAEGLLEGHFSTILGSYENPLDHLNLFPYYSNYLKLSLLEFTLLSQNCTHVPSKIA 125

Query: 136 FVGSGPMPLTSIIMAKHHLTSTHFDNFDIDEAANDVARSIVASDAEFEGRMKFLTRDIME 195
           FVGSGP+PLTSI++A +HLT+T F N+DID AAN +A  +V+SD +F  RM F T DIM 
Sbjct: 126 FVGSGPLPLTSIVLASYHLTTTSFHNYDIDPAANSMAAHLVSSDPDFSKRMLFHTTDIMN 185

Query: 196 VKEQLGEYDCIFLAALVGMSKEEKLTILGHIRKYMKDGGILLVRSAKGARAFLYPVVVEH 255
           V  +L EYD ++LAALVGM KEEK+ ++ H+ K+M  G +L++RSA GARAFLYPV+   
Sbjct: 186 VTNELKEYDVVYLAALVGMDKEEKIQVMDHLAKHMAPGALLMLRSAHGARAFLYPVIDPC 245

Query: 256 DLLDFEVLSAVHPNDDVINSVVLVR 280
           DL  FEVLS  HP D+VINSVV+ R
Sbjct: 246 DLRGFEVLSIFHPTDEVINSVVVAR 270

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	286
TAIR|locus:2195301	320	NAS3 "AT1G09240" [Arabidopsis	0.916	0.818	0.528	1e-68
TAIR|locus:2161770	320	NAS2 "AT5G56080" [Arabidopsis	0.954	0.853	0.496	2.1e-68
TAIR|locus:2010718	324	NAS4 "nicotianamine synthase 4	0.916	0.808	0.505	2.4e-67
TAIR|locus:2175304	320	NAS1 "AT5G04950" [Arabidopsis	0.933	0.834	0.490	3.1e-67

TAIR|locus:2195301 NAS3 "AT1G09240" [Arabidopsis thaliana (taxid:3702)]

 Score = 697 (250.4 bits), Expect = 1.0e-68, P = 1.0e-68
 Identities = 141/267 (52%), Positives = 191/267 (71%)

Query:    16 ELLIASVMQIHASISKLESLKPSKQVNSIFSRLVKLCTIPS-SIDITALPQEVQKMRESL 74
             E L+ ++  ++  ISKLESLKPS+ VN +F +LV  C  P+ +ID+T +   VQ++R +L
Sbjct:     6 EQLVQTICDLYEKISKLESLKPSEDVNILFKQLVSTCIPPNPNIDVTKMCDRVQEIRLNL 65

Query:    75 IVLCGRAEGLLELEFATFLTKIPQ-PLNNLSLFPYYGNYVKLSKLEYTILSEN--GVVQP 131
             I +CG AEG LE  F++ LT     PL++L++FPYY NY+KL KLE+ +L +N  G V P
Sbjct:    66 IKICGLAEGHLENHFSSILTSYQDNPLHHLNIFPYYNNYLKLGKLEFDLLEQNLNGFV-P 124

Query:   132 KKVAFVGSGPMPLTSIIMAKHHLTSTHFDNFDIDEAANDVARSIVASDAEFEGRMKFLTR 191
             K VAF+GSGP+PLTSI++A  HL  T F NFDID +AN +A  +V+SD +   RM F T 
Sbjct:   125 KSVAFIGSGPLPLTSIVLASFHLKDTIFHNFDIDPSANSLASLLVSSDPDISQRMFFHTV 184

Query:   192 DIMEVKEQLGEYDCIFLAALVGMSKEEKLTILGHIRKYMKDGGILLVRSAKGARAFLYPV 251
             DIM+V E L  +D +FLAALVGM+KEEK+ ++ H++K+M  G +L++RSA G RAFLYP+
Sbjct:   185 DIMDVTESLKSFDVVFLAALVGMNKEEKVKVIEHLQKHMAPGAVLMLRSAHGPRAFLYPI 244

Query:   252 VVEHDLLDFEVLSAVHPNDDVINSVVL 278
             V   DL  FEVLS  HP DDVINSVV+
Sbjct:   245 VEPCDLQGFEVLSIYHPTDDVINSVVI 271

GO:0030410 "nicotianamine synthase activity" evidence=IEA;IDA

GO:0030418 "nicotianamine biosynthetic process" evidence=IDA

GO:0009555 "pollen development" evidence=IGI

GO:0009860 "pollen tube growth" evidence=IGI

GO:0010233 "phloem transport" evidence=IGI

TAIR|locus:2161770 NAS2 "AT5G56080" [Arabidopsis thaliana (taxid:3702)]

 Score = 694 (249.4 bits), Expect = 2.1e-68, P = 2.1e-68
 Identities = 140/282 (49%), Positives = 193/282 (68%)

Query:     7 LSCESQIPAELLIASVMQIHASISKLESLKPSKQVNSIFSRLVKLCTIPS--SIDITALP 64
             ++CE+     L++  +M ++  IS LESLKPSK V+++F +LV  C +P+  +ID+T + 
Sbjct:     1 MACENN----LVVKQIMDLYNQISNLESLKPSKNVDTLFRQLVSTC-LPTDTNIDVTEIH 55

Query:    65 QE-VQKMRESLIVLCGRAEGLLELEFATFLTKIPQ-PLNNLSLFPYYGNYVKLSKLEYTI 122
              E V+ MR  LI LCG AEG LE  F+  L      PLN+L +FPYY NY+KL KLE+ +
Sbjct:    56 DEKVKDMRSHLIKLCGEAEGYLEQHFSAILGSFEDNPLNHLHIFPYYNNYLKLGKLEFDL 115

Query:   123 LSENGVVQPKKVAFVGSGPMPLTSIIMAKHHLTSTHFDNFDIDEAANDVARSIVASDAEF 182
             LS++    P KVAF+GSGPMPLTSI++AK HL +T F NFDID  AN +A ++V+ D++ 
Sbjct:   116 LSQHTTHVPTKVAFIGSGPMPLTSIVLAKFHLPNTTFHNFDIDSHANTLASNLVSRDSDL 175

Query:   183 EGRMKFLTRDIMEVKEQLGEYDCIFLAALVGMSKEEKLTILGHIRKYMKDGGILLVRSAK 242
               RM F T D++  KE L +YD +FLAALVGM KE K+  + H+ K+M  G ++++RSA 
Sbjct:   176 SKRMIFHTTDVLNAKEGLDQYDVVFLAALVGMDKESKVKAIEHLEKHMAPGAVVMLRSAH 235

Query:   243 GARAFLYPVVVEHDLLDFEVLSAVHPNDDVINSVVLVRNSQG 284
             G RAFLYP+V   DL  FEVL+  HP+DDV+NSVV+ R   G
Sbjct:   236 GLRAFLYPIVDSCDLKGFEVLTIYHPSDDVVNSVVIARKLGG 277

GO:0030410 "nicotianamine synthase activity" evidence=IEA;IDA

GO:0030418 "nicotianamine biosynthetic process" evidence=IDA

GO:0010043 "response to zinc ion" evidence=IEP;RCA

GO:0071281 "cellular response to iron ion" evidence=IEP

GO:0071369 "cellular response to ethylene stimulus" evidence=IEP

GO:0071732 "cellular response to nitric oxide" evidence=IEP

GO:0009555 "pollen development" evidence=IGI

GO:0009860 "pollen tube growth" evidence=IGI

GO:0010233 "phloem transport" evidence=IGI

TAIR|locus:2010718 NAS4 "nicotianamine synthase 4" [Arabidopsis thaliana (taxid:3702)]

 Score = 684 (245.8 bits), Expect = 2.4e-67, P = 2.4e-67
 Identities = 135/267 (50%), Positives = 190/267 (71%)

Query:    18 LIASVMQIHASISKLESLKPSKQVNSIFSRLVKLCTIPS-SIDITALPQEVQKMRESLIV 76
             L+  +  ++  ISKLE+LKP + V+++F +LV  C  P+ +ID+T + + +Q+MR +LI 
Sbjct:     9 LVNKICDLYEKISKLETLKPCEDVDTLFKQLVSTCIPPNPNIDVTKMSENIQEMRSNLIK 68

Query:    77 LCGRAEGLLELEFATFLTKIPQ-PLNNLSLFPYYGNYVKLSKLEYTILSEN--GVVQPKK 133
             +CG AEG LE  F++ LT     PL++L+LFPYY NY+KLSKLE+ +L +N  G V P+ 
Sbjct:    69 ICGEAEGYLEHHFSSILTSFEDNPLHHLNLFPYYNNYLKLSKLEFDLLEQNLNGFV-PRT 127

Query:   134 VAFVGSGPMPLTSIIMAKHHLTSTHFDNFDIDEAANDVARSIVASDAEFEGRMKFLTRDI 193
             VAF+GSGP+PLTS+++A  HL  + F NFDID +AN VA  +V+SD +   RM F T DI
Sbjct:   128 VAFIGSGPLPLTSVVLASSHLKDSIFHNFDIDPSANMVAARLVSSDPDLSQRMFFHTVDI 187

Query:   194 MEVKEQLGEYDCIFLAALVGMSKEEKLTILGHIRKYMKDGGILLVRSAKGARAFLYPVVV 253
             M+V E L  +D +FLAALVGM K+EK+ ++ H+ K+M  G +L++RSA G RAFLYP+V 
Sbjct:   188 MDVTESLKGFDVVFLAALVGMDKKEKVKVVEHLEKHMSPGALLMLRSAHGPRAFLYPIVE 247

Query:   254 EHDLLDFEVLSAVHPNDDVINSVVLVR 280
               DL  FEVLS  HP D+VINS+V+ R
Sbjct:   248 PCDLEGFEVLSVYHPTDEVINSIVISR 274

GO:0005634 "nucleus" evidence=ISM

GO:0030410 "nicotianamine synthase activity" evidence=IEA;IGI

GO:0030418 "nicotianamine biosynthetic process" evidence=IGI

GO:0009555 "pollen development" evidence=IGI

GO:0009860 "pollen tube growth" evidence=IGI

GO:0010233 "phloem transport" evidence=IGI

TAIR|locus:2175304 NAS1 "AT5G04950" [Arabidopsis thaliana (taxid:3702)]

 Score = 683 (245.5 bits), Expect = 3.1e-67, P = 3.1e-67
 Identities = 134/273 (49%), Positives = 190/273 (69%)

Query:    17 LLIASVMQIHASISKLESLKPSKQVNSIFSRLVKLCTIPS--SIDITALPQEVQKMRESL 74
             L++  ++ ++  ISKL+SLKPSK V+++F +LV  C +P+  +ID+T + +EV+ MR +L
Sbjct:     7 LVVKQIIDLYDQISKLKSLKPSKNVDTLFGQLVSTC-LPTDTNIDVTNMCEEVKDMRANL 65

Query:    75 IVLCGRAEGLLELEFATFLTKIPQ---PLNNLSLFPYYGNYVKLSKLEYTILSENGVVQP 131
             I LCG AEG LE  F+T L  + +   PL++L +FPYY NY+KL KLE+ +LS++    P
Sbjct:    66 IKLCGEAEGYLEQHFSTILGSLQEDQNPLDHLHIFPYYSNYLKLGKLEFDLLSQHSSHVP 125

Query:   132 KKVAFVGSGPMPLTSIIMAKHHLTSTHFDNFDIDEAANDVARSIVASDAEFEGRMKFLTR 191
              K+AFVGSGPMPLTSI++AK HL +T F NFDID  AN +A ++V+ D +   RM F T 
Sbjct:   126 TKIAFVGSGPMPLTSIVLAKFHLPNTTFHNFDIDSHANTLASNLVSRDPDLSKRMIFHTT 185

Query:   192 DIMEVKEQLGEYDCIFLAALVGMSKEEKLTILGHIRKYMKDGGILLVRSAKGARAFLYPV 251
             D++   E L +YD +FLAALVGM KE K+  + H+ K+M  G +L++RSA   RAFLYP+
Sbjct:   186 DVLNATEGLDQYDVVFLAALVGMDKESKVKAIEHLEKHMAPGAVLMLRSAHALRAFLYPI 245

Query:   252 VVEHDLLDFEVLSAVHPNDDVINSVVLVRNSQG 284
             V   DL  F++L+  HP DDV+NSVV+ R   G
Sbjct:   246 VDSSDLKGFQLLTIYHPTDDVVNSVVIARKLGG 278


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.320   0.136   0.378    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      286       286   0.00086  115 3  11 22  0.49    33
                                                     33  0.42    37


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  4
  No. of states in DFA:  576 (61 KB)
  Total size of DFA:  174 KB (2103 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  25.18u 0.07s 25.25t   Elapsed:  00:00:13
  Total cpu time:  25.18u 0.07s 25.25t   Elapsed:  00:00:13
  Start:  Thu May  9 17:01:09 2013   End:  Thu May  9 17:01:22 2013

GO:0030410 "nicotianamine synthase activity" evidence=IEA;IDA

GO:0030418 "nicotianamine biosynthetic process" evidence=IDA

GO:0071281 "cellular response to iron ion" evidence=IEP

GO:0071369 "cellular response to ethylene stimulus" evidence=IEP

GO:0071732 "cellular response to nitric oxide" evidence=IEP

GO:0009555 "pollen development" evidence=IGI

GO:0009860 "pollen tube growth" evidence=IGI

GO:0010233 "phloem transport" evidence=IGI

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q9FKT9	NAS2_ARATH	2, ., 5, ., 1, ., 4, 3	0.4946	0.9580	0.8562	yes	no
Q10MI9	NAS2_ORYSJ	2, ., 5, ., 1, ., 4, 3	0.4740	0.9300	0.8159	yes	no
Q9XGI7	NAS_SOLLC	2, ., 5, ., 1, ., 4, 3	0.5133	0.9195	0.8296	N/A	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
3rd Layer	2.5.1	0.921
3rd Layer	2.5.1.43	0.914

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: GSVIVG00031390001 SubName- Full=Chromosome chr11 scaffold_56, whole genome shotgun sequence; (318 aa) (Vitis vinifera)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	286
PLN03075	296	PLN03075, PLN03075, nicotianamine synthase; Provis	1e-163
pfam03059	277	pfam03059, NAS, Nicotianamine synthase protein	1e-114
pfam12847	104	pfam12847, Methyltransf_18, Methyltransferase doma	1e-05
cd02440	107	cd02440, AdoMet_MTases, S-adenosylmethionine-depen	6e-04

>gnl|CDD|178624 PLN03075, PLN03075, nicotianamine synthase; Provisional

 Score =  454 bits (1171), Expect = e-163
 Identities = 160/273 (58%), Positives = 204/273 (74%)

Query: 8   SCESQIPAELLIASVMQIHASISKLESLKPSKQVNSIFSRLVKLCTIPSSIDITALPQEV 67
           S E     ELL+  +  ++A ISKLESLKPSK+VN++F++LV  C  PSSID+T L +E+
Sbjct: 1   SEEMGCQEELLVEKICDLYAQISKLESLKPSKEVNTLFTQLVSTCIPPSSIDVTKLCEEI 60

Query: 68  QKMRESLIVLCGRAEGLLELEFATFLTKIPQPLNNLSLFPYYGNYVKLSKLEYTILSENG 127
           Q+MR  LI LCG AEGLLE  F+T L     PL++L+LFPYY NY+KLSKLE+ +LS++ 
Sbjct: 61  QEMRSKLIKLCGEAEGLLEAHFSTILGSFDNPLDHLNLFPYYNNYLKLSKLEFDLLSQHV 120

Query: 128 VVQPKKVAFVGSGPMPLTSIIMAKHHLTSTHFDNFDIDEAANDVARSIVASDAEFEGRMK 187
              P KVAFVGSGP+PLTSI++AKHHL +T F NFDID +ANDVAR +V+SD +   RM 
Sbjct: 121 NGVPTKVAFVGSGPLPLTSIVLAKHHLPTTSFHNFDIDPSANDVARRLVSSDPDLSKRMF 180

Query: 188 FLTRDIMEVKEQLGEYDCIFLAALVGMSKEEKLTILGHIRKYMKDGGILLVRSAKGARAF 247
           F T D+M+V E L EYD +FLAALVGM KEEK+ ++ H+ K+M  G +L++RSA GARAF
Sbjct: 181 FHTADVMDVTESLKEYDVVFLAALVGMDKEEKVKVIEHLGKHMAPGALLMLRSAHGARAF 240

Query: 248 LYPVVVEHDLLDFEVLSAVHPNDDVINSVVLVR 280
           LYPVV   DL  FEVLS  HP D+VINSV++ R
Sbjct: 241 LYPVVDPCDLRGFEVLSVFHPTDEVINSVIIAR 273

Length = 296

>gnl|CDD|217343 pfam03059, NAS, Nicotianamine synthase protein

 Score =  330 bits (848), Expect = e-114
 Identities = 134/266 (50%), Positives = 186/266 (69%)

Query: 15  AELLIASVMQIHASISKLESLKPSKQVNSIFSRLVKLCTIPSSIDITALPQEVQKMRESL 74
           +E L+  ++ ++A+ISKL SL PS  VN++F++LV  C  PS +D+T L  E+Q++R  L
Sbjct: 6   SEALVEKILDLYAAISKLPSLSPSPDVNALFTQLVTTCIPPSPVDVTKLGPEIQEIRSLL 65

Query: 75  IVLCGRAEGLLELEFATFLTKIPQPLNNLSLFPYYGNYVKLSKLEYTILSENGVVQPKKV 134
           I LC  AEGLLE  ++  L     PL++L +FPYY NY+KLSKLEY +LS +    P ++
Sbjct: 66  IRLCSTAEGLLESHYSDILAAFDNPLDHLEIFPYYKNYLKLSKLEYDLLSRHVTGVPSRI 125

Query: 135 AFVGSGPMPLTSIIMAKHHLTSTHFDNFDIDEAANDVARSIVASDAEFEGRMKFLTRDIM 194
           AF+GSGP+PLTS+++A +HL  T FDN+DI   AND A  +V++D +   RM F T D++
Sbjct: 126 AFIGSGPLPLTSLVLASYHLPDTSFDNYDICGLANDRASKLVSADGDLSSRMSFHTADVL 185

Query: 195 EVKEQLGEYDCIFLAALVGMSKEEKLTILGHIRKYMKDGGILLVRSAKGARAFLYPVVVE 254
           +V  +L  YD +FLAALVGM KEEK  ++ H+ K+M  G  L++RSA GARAFLYPVV  
Sbjct: 186 DVTTELKAYDVVFLAALVGMDKEEKAKVIDHLGKHMAPGAALVLRSAHGARAFLYPVVDP 245

Query: 255 HDLLDFEVLSAVHPNDDVINSVVLVR 280
            DL  FEVL+  HP D+VINSV++ R
Sbjct: 246 CDLRGFEVLAVYHPEDEVINSVIIAR 271

Nicotianamine synthase EC:2.5.1.43 catalyzes the trimerisation of S-adenosylmethionine to yield one molecule of nicotianamine. Nicotianamine has an important role in plant iron uptake mechanisms. Plants adopt two strategies (termed I and II) of iron acquisition. Strategy I is adopted by all higher plants except graminaceous plants, which adopt strategy II. In strategy I plants, the role of nicotianamine is not fully determined: possible roles include the formation of more stable complexes with ferrous than with ferric ion, which might serve as a sensor of the physiological status of iron within a plant, or which might be involved in the transport of iron. In strategy II (graminaceous) plants, nicotianamine is the key intermediate (and nicotianamine synthase the key enzyme) in the synthesis of the mugineic family (the only known family in plants) of phytosiderophores. Phytosiderophores are iron chelators whose secretion by the roots is greatly increased in instances of iron deficiency. The 3D structures of five example NAS from Methanothermobacter thermautotrophicus reveal the monomer to consist of a five-helical bundle N-terminal domain on top of a classic Rossmann fold C-terminal domain. The N-terminal domain is unique to the NAS family, whereas the C-terminal domain is homologous to the class I family of SAM-dependent methyltransferases. An active site is created at the interface of the two domains, at the rim of a large cavity that corresponds to the nucleotide binding site such as is found in other proteins adopting a Rossmann fold. Length = 277

>gnl|CDD|221804 pfam12847, Methyltransf_18, Methyltransferase domain

 Score = 43.1 bits (102), Expect = 1e-05
 Identities = 20/101 (19%), Positives = 41/101 (40%), Gaps = 10/101 (9%)

Query: 138 GSGPMPLTSIIMAKHHLTSTHFDNFDIDEAANDVARSIVASDAEFEGRMKFLTRDIMEVK 197
           G+G     +I +A+    +      D+     ++AR           R+ F+  D  +  
Sbjct: 11  GTG---SLAIELARLFPGA-RVTGVDLSPEMLELARENAK--LALGPRITFVQGDAPDAL 64

Query: 198 EQLGEYDCIFLAALVGMSKEEKLTILGHIRKYMKDGGILLV 238
           + L  +D +F    +G    + L +L  +   +K GG L++
Sbjct: 65  DLLEGFDAVF----IGGGGGDLLELLDALASLLKPGGRLVL 101

Protein in this family function as methyltransferases. Length = 104

>gnl|CDD|100107 cd02440, AdoMet_MTases, S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy)

 Score = 38.2 bits (89), Expect = 6e-04
 Identities = 20/78 (25%), Positives = 34/78 (43%), Gaps = 3/78 (3%)

Query: 162 FDIDEAANDVARSIVASDAEFEGRMKFLTRDIMEVKEQLGE-YDCIFLAALVGMSKEEKL 220
            DI   A ++AR   A  A     ++ L  D  E+  +  E +D I     +    E+  
Sbjct: 27  VDISPVALELARKAAA--ALLADNVEVLKGDAEELPPEADESFDVIISDPPLHHLVEDLA 84

Query: 221 TILGHIRKYMKDGGILLV 238
             L   R+ +K GG+L++
Sbjct: 85  RFLEEARRLLKPGGVLVL 102

There are at least five structurally distinct families of AdoMet-MTases, class I being the largest and most diverse. Within this class enzymes can be classified by different substrate specificities (small molecules, lipids, nucleic acids, etc.) and different target atoms for methylation (nitrogen, oxygen, carbon, sulfur, etc.). Length = 107

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	286
PF03059	276	NAS: Nicotianamine synthase protein; InterPro: IPR	100.0
PLN03075	296	nicotianamine synthase; Provisional	100.0
PF12847	112	Methyltransf_18: Methyltransferase domain; PDB: 3G	99.75
PLN02244	340	tocopherol O-methyltransferase	99.68
COG2226	238	UbiE Methylase involved in ubiquinone/menaquinone	99.66
PF01209	233	Ubie_methyltran: ubiE/COQ5 methyltransferase famil	99.64
PF01596	205	Methyltransf_3: O-methyltransferase; InterPro: IPR	99.64
PF13847	152	Methyltransf_31: Methyltransferase domain; PDB: 3T	99.63
COG4122	219	Predicted O-methyltransferase [General function pr	99.62
PLN02781	234	Probable caffeoyl-CoA O-methyltransferase	99.62
PRK00107	187	gidB 16S rRNA methyltransferase GidB; Reviewed	99.61
PRK11207	197	tellurite resistance protein TehB; Provisional	99.61
PRK15451	247	tRNA cmo(5)U34 methyltransferase; Provisional	99.61
PLN02476	278	O-methyltransferase	99.58
PLN02589	247	caffeoyl-CoA O-methyltransferase	99.58
TIGR00138	181	gidB 16S rRNA methyltransferase GidB. GidB (glucos	99.56
PF08241	95	Methyltransf_11: Methyltransferase domain; InterPr	99.56
PRK11036	255	putative S-adenosyl-L-methionine-dependent methylt	99.55
TIGR00740	239	methyltransferase, putative. A simple BLAST search	99.55
PLN02233	261	ubiquinone biosynthesis methyltransferase	99.55
PTZ00098	263	phosphoethanolamine N-methyltransferase; Provision	99.54
TIGR02752	231	MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone me	99.54
TIGR02469	124	CbiT precorrin-6Y C5,15-methyltransferase (decarbo	99.54
PRK12335	287	tellurite resistance protein TehB; Provisional	99.54
PRK11873	272	arsM arsenite S-adenosylmethyltransferase; Reviewe	99.52
PF02353	273	CMAS: Mycolic acid cyclopropane synthetase; InterP	99.52
TIGR00477	195	tehB tellurite resistance protein TehB. Part of a	99.52
PLN02396	322	hexaprenyldihydroxybenzoate methyltransferase	99.52
TIGR03840	213	TMPT_Se_Te thiopurine S-methyltransferase, Se/Te d	99.51
PRK13944	205	protein-L-isoaspartate O-methyltransferase; Provis	99.5
COG2227	243	UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-	99.5
PF13649	101	Methyltransf_25: Methyltransferase domain; PDB: 3B	99.49
PRK00377	198	cbiT cobalt-precorrin-6Y C(15)-methyltransferase;	99.48
PRK00216	239	ubiE ubiquinone/menaquinone biosynthesis methyltra	99.48
PRK13255	218	thiopurine S-methyltransferase; Reviewed	99.47
TIGR00080	215	pimt protein-L-isoaspartate(D-aspartate) O-methylt	99.45
PRK13942	212	protein-L-isoaspartate O-methyltransferase; Provis	99.45
TIGR02716	306	C20_methyl_CrtF C-20 methyltransferase BchU. Membe	99.45
COG2242	187	CobL Precorrin-6B methylase 2 [Coenzyme metabolism	99.44
PRK14103	255	trans-aconitate 2-methyltransferase; Provisional	99.44
smart00828	224	PKS_MT Methyltransferase in polyketide synthase (P	99.43
PRK00121	202	trmB tRNA (guanine-N(7)-)-methyltransferase; Revie	99.43
PF03848	192	TehB: Tellurite resistance protein TehB; InterPro:	99.42
PRK04457	262	spermidine synthase; Provisional	99.42
PRK08287	187	cobalt-precorrin-6Y C(15)-methyltransferase; Valid	99.42
COG2230	283	Cfa Cyclopropane fatty acid synthase and related m	99.41
COG2519	256	GCD14 tRNA(1-methyladenosine) methyltransferase an	99.41
PLN02336	475	phosphoethanolamine N-methyltransferase	99.41
PRK07402	196	precorrin-6B methylase; Provisional	99.39
KOG1270	282	consensus Methyltransferases [Coenzyme transport a	99.39
PF13659	117	Methyltransf_26: Methyltransferase domain; PDB: 3G	99.39
KOG1540	296	consensus Ubiquinone biosynthesis methyltransferas	99.38
PRK06922	677	hypothetical protein; Provisional	99.38
PRK13256	226	thiopurine S-methyltransferase; Reviewed	99.37
COG4106	257	Tam Trans-aconitate methyltransferase [General fun	99.37
PRK01683	258	trans-aconitate 2-methyltransferase; Provisional	99.37
PRK10258	251	biotin biosynthesis protein BioC; Provisional	99.36
TIGR01934	223	MenG_MenH_UbiE ubiquinone/menaquinone biosynthesis	99.36
TIGR00091	194	tRNA (guanine-N(7)-)-methyltransferase. In E. coli	99.35
TIGR02021	219	BchM-ChlM magnesium protoporphyrin O-methyltransfe	99.34
PRK08317	241	hypothetical protein; Provisional	99.34
PF08242	99	Methyltransf_12: Methyltransferase domain; InterPr	99.34
PRK04266	226	fibrillarin; Provisional	99.33
TIGR02072	240	BioC biotin biosynthesis protein BioC. This enzyme	99.33
PF05175	170	MTS: Methyltransferase small domain; InterPro: IPR	99.32
TIGR03438	301	probable methyltransferase. This model represents	99.32
PRK00517	250	prmA ribosomal protein L11 methyltransferase; Revi	99.31
TIGR00406	288	prmA ribosomal protein L11 methyltransferase. Ribo	99.3
PRK11088	272	rrmA 23S rRNA methyltransferase A; Provisional	99.3
TIGR03533	284	L3_gln_methyl protein-(glutamine-N5) methyltransfe	99.28
PRK00312	212	pcm protein-L-isoaspartate O-methyltransferase; Re	99.28
PRK07580	230	Mg-protoporphyrin IX methyl transferase; Validated	99.28
smart00138	264	MeTrc Methyltransferase, chemotaxis proteins. Meth	99.27
PRK13943	322	protein-L-isoaspartate O-methyltransferase; Provis	99.27
KOG1663	237	consensus O-methyltransferase [Secondary metabolit	99.27
PRK11705	383	cyclopropane fatty acyl phospholipid synthase; Pro	99.27
PRK15068	322	tRNA mo(5)U34 methyltransferase; Provisional	99.27
PF01135	209	PCMT: Protein-L-isoaspartate(D-aspartate) O-methyl	99.26
PF05401	201	NodS: Nodulation protein S (NodS); InterPro: IPR00	99.26
PLN02490	340	MPBQ/MSBQ methyltransferase	99.25
TIGR00446	264	nop2p NOL1/NOP2/sun family putative RNA methylase.	99.24
PF05724	218	TPMT: Thiopurine S-methyltransferase (TPMT); Inter	99.24
TIGR00452	314	methyltransferase, putative. Known examples to dat	99.24
PRK00811	283	spermidine synthase; Provisional	99.23
TIGR03587	204	Pse_Me-ase pseudaminic acid biosynthesis-associate	99.22
PRK11805	307	N5-glutamine S-adenosyl-L-methionine-dependent met	99.21
COG2518	209	Pcm Protein-L-isoaspartate carboxylmethyltransfera	99.21
PLN02366	308	spermidine synthase	99.21
PRK14121	390	tRNA (guanine-N(7)-)-methyltransferase; Provisiona	99.21
PF13489	161	Methyltransf_23: Methyltransferase domain; PDB: 3J	99.2
TIGR00537	179	hemK_rel_arch HemK-related putative methylase. The	99.2
PRK15001	378	SAM-dependent 23S ribosomal RNA mG1835 methyltrans	99.2
COG2264	300	PrmA Ribosomal protein L11 methylase [Translation,	99.19
cd02440	107	AdoMet_MTases S-adenosylmethionine-dependent methy	99.19
PRK14903	431	16S rRNA methyltransferase B; Provisional	99.19
PRK14967	223	putative methyltransferase; Provisional	99.18
PRK14901	434	16S rRNA methyltransferase B; Provisional	99.18
PRK14902	444	16S rRNA methyltransferase B; Provisional	99.18
TIGR00563	426	rsmB ribosomal RNA small subunit methyltransferase	99.18
PRK05134	233	bifunctional 3-demethylubiquinone-9 3-methyltransf	99.18
TIGR00536	284	hemK_fam HemK family putative methylases. The gene	99.17
PF06325	295	PrmA: Ribosomal protein L11 methyltransferase (Prm	99.17
PRK14904	445	16S rRNA methyltransferase B; Provisional	99.16
TIGR03534	251	RF_mod_PrmC protein-(glutamine-N5) methyltransfera	99.16
TIGR01177	329	conserved hypothetical protein TIGR01177. This fam	99.16
PRK14968	188	putative methyltransferase; Provisional	99.16
PRK10901	427	16S rRNA methyltransferase B; Provisional	99.16
PRK01581	374	speE spermidine synthase; Validated	99.15
PF08704	247	GCD14: tRNA methyltransferase complex GCD14 subuni	99.15
PLN02336	475	phosphoethanolamine N-methyltransferase	99.14
TIGR01983	224	UbiG ubiquinone biosynthesis O-methyltransferase.	99.12
PRK05785	226	hypothetical protein; Provisional	99.12
PRK01544	506	bifunctional N5-glutamine S-adenosyl-L-methionine-	99.11
PLN02585	315	magnesium protoporphyrin IX methyltransferase	99.1
PTZ00146	293	fibrillarin; Provisional	99.09
COG4123	248	Predicted O-methyltransferase [General function pr	99.09
PRK09489	342	rsmC 16S ribosomal RNA m2G1207 methyltransferase;	99.09
KOG4300	252	consensus Predicted methyltransferase [General fun	99.09
PRK06202	232	hypothetical protein; Provisional	99.07
TIGR03704	251	PrmC_rel_meth putative protein-(glutamine-N5) meth	99.07
KOG1271	227	consensus Methyltransferases [General function pre	99.06
PRK15128	396	23S rRNA m(5)C1962 methyltransferase; Provisional	99.06
PRK09328	275	N5-glutamine S-adenosyl-L-methionine-dependent met	99.05
TIGR00417	270	speE spermidine synthase. the SpeE subunit of sper	99.05
COG2890	280	HemK Methylase of polypeptide chain release factor	99.03
TIGR00438	188	rrmJ cell division protein FtsJ.	99.02
PRK14966	423	unknown domain/N5-glutamine S-adenosyl-L-methionin	99.01
PRK11783	702	rlmL 23S rRNA m(2)G2445 methyltransferase; Provisi	99.01
PRK11188	209	rrmJ 23S rRNA methyltransferase J; Provisional	99.01
PLN02823	336	spermine synthase	98.99
PF01564	246	Spermine_synth: Spermine/spermidine synthase; Inte	98.98
smart00650	169	rADc Ribosomal RNA adenine dimethylases.	98.96
PRK03612	521	spermidine synthase; Provisional	98.95
PRK10909	199	rsmD 16S rRNA m(2)G966-methyltransferase; Provisio	98.94
COG0421	282	SpeE Spermidine synthase [Amino acid transport and	98.91
PF00891	241	Methyltransf_2: O-methyltransferase; InterPro: IPR	98.91
PRK03522	315	rumB 23S rRNA methyluridine methyltransferase; Rev	98.89
COG2813	300	RsmC 16S RNA G1207 methylase RsmC [Translation, ri	98.87
PF08003	315	Methyltransf_9: Protein of unknown function (DUF16	98.87
PRK13168	443	rumA 23S rRNA m(5)U1939 methyltransferase; Reviewe	98.87
PLN02232	160	ubiquinone biosynthesis methyltransferase	98.85
TIGR00479	431	rumA 23S rRNA (uracil-5-)-methyltransferase RumA.	98.84
TIGR02085	374	meth_trns_rumB 23S rRNA (uracil-5-)-methyltransfer	98.79
PLN02672	1082	methionine S-methyltransferase	98.78
COG2263	198	Predicted RNA methylase [Translation, ribosomal st	98.77
PF13578	106	Methyltransf_24: Methyltransferase domain; PDB: 3S	98.72
KOG2361	264	consensus Predicted methyltransferase [General fun	98.72
PRK11933	470	yebU rRNA (cytosine-C(5)-)-methyltransferase RsmF;	98.72
PF02390	195	Methyltransf_4: Putative methyltransferase ; Inter	98.72
TIGR00095	189	RNA methyltransferase, RsmD family. This model rep	98.72
PF02527	184	GidB: rRNA small subunit methyltransferase G; Inte	98.71
PF09445	163	Methyltransf_15: RNA cap guanine-N2 methyltransfer	98.7
TIGR02081	194	metW methionine biosynthesis protein MetW. This pr	98.68
PRK00536	262	speE spermidine synthase; Provisional	98.68
PRK11727	321	23S rRNA mA1618 methyltransferase; Provisional	98.64
PF06080	204	DUF938: Protein of unknown function (DUF938); Inte	98.63
PF02475	200	Met_10: Met-10+ like-protein; InterPro: IPR003402	98.6
COG1092	393	Predicted SAM-dependent methyltransferases [Genera	98.59
COG0220	227	Predicted S-adenosylmethionine-dependent methyltra	98.57
PTZ00338	294	dimethyladenosine transferase-like protein; Provis	98.56
KOG1269	364	consensus SAM-dependent methyltransferases [Lipid	98.55
PF05185	448	PRMT5: PRMT5 arginine-N-methyltransferase; InterPr	98.53
PRK04148	134	hypothetical protein; Provisional	98.53
PF03291	331	Pox_MCEL: mRNA capping enzyme; InterPro: IPR004971	98.52
PF07021	193	MetW: Methionine biosynthesis protein MetW; InterP	98.5
PRK05031	362	tRNA (uracil-5-)-methyltransferase; Validated	98.5
PHA03411	279	putative methyltransferase; Provisional	98.49
COG0357	215	GidB Predicted S-adenosylmethionine-dependent meth	98.46
PRK04338	382	N(2),N(2)-dimethylguanosine tRNA methyltransferase	98.45
PRK14896	258	ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1	98.45
PRK10611	287	chemotaxis methyltransferase CheR; Provisional	98.44
TIGR02143	353	trmA_only tRNA (uracil-5-)-methyltransferase. This	98.44
PF10294	173	Methyltransf_16: Putative methyltransferase; Inter	98.43
KOG2899	288	consensus Predicted methyltransferase [General fun	98.42
PF12147	311	Methyltransf_20: Putative methyltransferase; Inter	98.42
PF01739	196	CheR: CheR methyltransferase, SAM binding domain;	98.4
PF03602	183	Cons_hypoth95: Conserved hypothetical protein 95;	98.39
KOG1661	237	consensus Protein-L-isoaspartate(D-aspartate) O-me	98.37
PRK00274	272	ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1	98.36
PF04816	205	DUF633: Family of unknown function (DUF633) ; Inte	98.35
TIGR00755	253	ksgA dimethyladenosine transferase. Alternate name	98.35
KOG1541	270	consensus Predicted protein carboxyl methylase [Ge	98.34
PF10672	286	Methyltrans_SAM: S-adenosylmethionine-dependent me	98.34
COG4976	287	Predicted methyltransferase (contains TPR repeat)	98.33
PF01170	179	UPF0020: Putative RNA methylase family UPF0020; In	98.33
PF07091	251	FmrO: Ribosomal RNA methyltransferase (FmrO); PDB:	98.32
COG2521	287	Predicted archaeal methyltransferase [General func	98.31
TIGR00478	228	tly hemolysin TlyA family protein. Hemolysins are	98.29
PRK00050	296	16S rRNA m(4)C1402 methyltranserfase; Provisional	98.29
PRK09424	509	pntA NAD(P) transhydrogenase subunit alpha; Provis	98.27
COG0144	355	Sun tRNA and rRNA cytosine-C5-methylases [Translat	98.25
PHA03412	241	putative methyltransferase; Provisional	98.24
KOG3420	185	consensus Predicted RNA methylase [Translation, ri	98.23
KOG2904	328	consensus Predicted methyltransferase [General fun	98.21
PF08123	205	DOT1: Histone methylation protein DOT1 ; InterPro:	98.2
KOG2915	314	consensus tRNA(1-methyladenosine) methyltransferas	98.19
COG0742	187	N6-adenine-specific methylase [DNA replication, re	98.18
COG1041	347	Predicted DNA modification methylase [DNA replicat	98.18
KOG3010	261	consensus Methyltransferase [General function pred	98.14
KOG1499	346	consensus Protein arginine N-methyltransferase PRM	98.12
COG1352	268	CheR Methylase of chemotaxis methyl-accepting prot	98.12
PF05958	352	tRNA_U5-meth_tr: tRNA (Uracil-5-)-methyltransferas	98.11
TIGR00308	374	TRM1 tRNA(guanine-26,N2-N2) methyltransferase. Thi	98.1
KOG1975	389	consensus mRNA cap methyltransferase [RNA processi	98.1
COG2265	432	TrmA SAM-dependent methyltransferases related to t	98.09
PF09243	274	Rsm22: Mitochondrial small ribosomal subunit Rsm22	98.09
COG2520	341	Predicted methyltransferase [General function pred	98.08
COG1063	350	Tdh Threonine dehydrogenase and related Zn-depende	98.07
TIGR00561	511	pntA NAD(P) transhydrogenase, alpha subunit. In so	98.06
PRK01544	506	bifunctional N5-glutamine S-adenosyl-L-methionine-	98.03
COG0686	371	Ald Alanine dehydrogenase [Amino acid transport an	98.02
PRK09880	343	L-idonate 5-dehydrogenase; Provisional	98.02
COG1064	339	AdhP Zn-dependent alcohol dehydrogenases [General	98.01
PF01189	283	Nol1_Nop2_Fmu: NOL1/NOP2/sun family; InterPro: IPR	98.0
KOG0024	354	consensus Sorbitol dehydrogenase [Secondary metabo	97.99
PF01234	256	NNMT_PNMT_TEMT: NNMT/PNMT/TEMT family; InterPro: I	97.99
COG4262	508	Predicted spermidine synthase with an N-terminal m	97.94
COG3963	194	Phospholipid N-methyltransferase [Lipid metabolism	97.94
KOG2730	263	consensus Methylase [General function prediction o	97.93
COG0116	381	Predicted N6-adenine-specific DNA methylase [DNA r	97.89
PF01728	181	FtsJ: FtsJ-like methyltransferase; InterPro: IPR00	97.89
PF04672	267	Methyltransf_19: S-adenosyl methyltransferase; Int	97.86
KOG1500	517	consensus Protein arginine N-methyltransferase CAR	97.86
COG0500	257	SmtA SAM-dependent methyltransferases [Secondary m	97.84
KOG0820	315	consensus Ribosomal RNA adenine dimethylase [RNA p	97.8
PRK11783	702	rlmL 23S rRNA m(2)G2445 methyltransferase; Provisi	97.78
PF05891	218	Methyltransf_PK: AdoMet dependent proline di-methy	97.77
COG0030	259	KsgA Dimethyladenosine transferase (rRNA methylati	97.73
TIGR03439	319	methyl_EasF probable methyltransferase domain, Eas	97.73
COG4076	252	Predicted RNA methylase [General function predicti	97.72
PF06962	140	rRNA_methylase: Putative rRNA methylase; InterPro:	97.71
cd00401	413	AdoHcyase S-adenosyl-L-homocysteine hydrolase (Ado	97.69
KOG3191	209	consensus Predicted N6-DNA-methyltransferase [Tran	97.68
COG2384	226	Predicted SAM-dependent methyltransferase [General	97.67
PF02737	180	3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD bind	97.65
TIGR01444	143	fkbM_fam methyltransferase, FkbM family. Members o	97.64
PRK10742	250	putative methyltransferase; Provisional	97.64
PRK07066	321	3-hydroxybutyryl-CoA dehydrogenase; Validated	97.62
PF07279	218	DUF1442: Protein of unknown function (DUF1442); In	97.58
cd08237	341	ribitol-5-phosphate_DH ribitol-5-phosphate dehydro	97.56
PF05971	299	Methyltransf_10: Protein of unknown function (DUF8	97.53
PF05148	219	Methyltransf_8: Hypothetical methyltransferase; In	97.52
cd08230	355	glucose_DH Glucose dehydrogenase. Glucose dehydrog	97.5
PRK05808	282	3-hydroxybutyryl-CoA dehydrogenase; Validated	97.49
TIGR02822	329	adh_fam_2 zinc-binding alcohol dehydrogenase famil	97.46
PRK07819	286	3-hydroxybutyryl-CoA dehydrogenase; Validated	97.44
TIGR00518	370	alaDH alanine dehydrogenase. The family of known L	97.43
PF01861	243	DUF43: Protein of unknown function DUF43; InterPro	97.43
PF03721	185	UDPG_MGDP_dh_N: UDP-glucose/GDP-mannose dehydrogen	97.42
TIGR03366	280	HpnZ_proposed putative phosphonate catabolism asso	97.42
PRK06035	291	3-hydroxyacyl-CoA dehydrogenase; Validated	97.4
KOG3178	342	consensus Hydroxyindole-O-methyltransferase and re	97.38
TIGR00006	305	S-adenosyl-methyltransferase MraW. Genetics paper	97.36
PF13679	141	Methyltransf_32: Methyltransferase domain	97.35
PRK11760	357	putative 23S rRNA C2498 ribose 2'-O-ribose methylt	97.35
PF04989	206	CmcI: Cephalosporin hydroxylase; InterPro: IPR0070	97.34
PF07942	270	N2227: N2227-like protein; InterPro: IPR012901 Thi	97.33
cd08239	339	THR_DH_like L-threonine dehydrogenase (TDH)-like.	97.32
COG3897	218	Predicted methyltransferase [General function pred	97.3
PRK07530	292	3-hydroxybutyryl-CoA dehydrogenase; Validated	97.3
TIGR02987	524	met_A_Alw26 type II restriction m6 adenine DNA met	97.3
cd08281	371	liver_ADH_like1 Zinc-dependent alcohol dehydrogena	97.27
TIGR03201	349	dearomat_had 6-hydroxycyclohex-1-ene-1-carbonyl-Co	97.25
PRK08293	287	3-hydroxybutyryl-CoA dehydrogenase; Validated	97.24
PF01262	168	AlaDh_PNT_C: Alanine dehydrogenase/PNT, C-terminal	97.23
KOG1709	271	consensus Guanidinoacetate methyltransferase and r	97.17
COG0293	205	FtsJ 23S rRNA methylase [Translation, ribosomal st	97.12
PRK09260	288	3-hydroxybutyryl-CoA dehydrogenase; Validated	97.12
TIGR03451	358	mycoS_dep_FDH mycothiol-dependent formaldehyde deh	97.11
PLN02740	381	Alcohol dehydrogenase-like	97.1
PF02384	311	N6_Mtase: N-6 DNA Methylase; InterPro: IPR003356 T	97.09
KOG2352	482	consensus Predicted spermine/spermidine synthase [	97.02
PLN02545	295	3-hydroxybutyryl-CoA dehydrogenase	97.02
TIGR01202	308	bchC 2-desacetyl-2-hydroxyethyl bacteriochlorophyl	97.01
PRK05476	425	S-adenosyl-L-homocysteine hydrolase; Provisional	96.98
PRK10309	347	galactitol-1-phosphate dehydrogenase; Provisional	96.98
TIGR02441	737	fa_ox_alpha_mit fatty acid oxidation complex, alph	96.97
PF05219	265	DREV: DREV methyltransferase; InterPro: IPR007884	96.95
PRK06130	311	3-hydroxybutyryl-CoA dehydrogenase; Validated	96.94
cd08296	333	CAD_like Cinnamyl alcohol dehydrogenases (CAD). Ci	96.91
TIGR00936	406	ahcY adenosylhomocysteinase. This enzyme hydrolyze	96.91
PF00398	262	RrnaAD: Ribosomal RNA adenine dimethylase; InterPr	96.88
PF02005	377	TRM: N2,N2-dimethylguanosine tRNA methyltransferas	96.84
KOG2187	534	consensus tRNA uracil-5-methyltransferase and rela	96.83
PLN03154	348	putative allyl alcohol dehydrogenase; Provisional	96.82
KOG3045	325	consensus Predicted RNA methylase involved in rRNA	96.82
PRK08306	296	dipicolinate synthase subunit A; Reviewed	96.81
TIGR02825	325	B4_12hDH leukotriene B4 12-hydroxydehydrogenase/15	96.8
PLN02494	477	adenosylhomocysteinase	96.78
PRK07502	307	cyclohexadienyl dehydrogenase; Validated	96.76
COG1062	366	AdhC Zn-dependent alcohol dehydrogenases, class II	96.76
TIGR02818	368	adh_III_F_hyde S-(hydroxymethyl)glutathione dehydr	96.74
PLN02586	360	probable cinnamyl alcohol dehydrogenase	96.72
PRK11730	715	fadB multifunctional fatty acid oxidation complex	96.7
cd08283	386	FDH_like_1 Glutathione-dependent formaldehyde dehy	96.69
KOG1562	337	consensus Spermidine synthase [Amino acid transpor	96.69
PRK11154	708	fadJ multifunctional fatty acid oxidation complex	96.68
TIGR02437	714	FadB fatty oxidation complex, alpha subunit FadB.	96.68
PLN02178	375	cinnamyl-alcohol dehydrogenase	96.66
PLN02827	378	Alcohol dehydrogenase-like	96.66
PLN02514	357	cinnamyl-alcohol dehydrogenase	96.65
cd08300	368	alcohol_DH_class_III class III alcohol dehydrogena	96.62
PF01269	229	Fibrillarin: Fibrillarin; InterPro: IPR000692 Fibr	96.61
KOG3201	201	consensus Uncharacterized conserved protein [Funct	96.6
cd08277	365	liver_alcohol_DH_like Liver alcohol dehydrogenase.	96.6
TIGR02279	503	PaaC-3OHAcCoADH 3-hydroxyacyl-CoA dehydrogenase Pa	96.58
PRK08268	507	3-hydroxy-acyl-CoA dehydrogenase; Validated	96.55
cd08238	410	sorbose_phosphate_red L-sorbose-1-phosphate reduct	96.55
cd08285	351	NADP_ADH NADP(H)-dependent alcohol dehydrogenases.	96.54
PRK15182	425	Vi polysaccharide biosynthesis protein TviB; Provi	96.52
cd08233	351	butanediol_DH_like (2R,3R)-2,3-butanediol dehydrog	96.52
TIGR02819	393	fdhA_non_GSH formaldehyde dehydrogenase, glutathio	96.52
KOG1331	293	consensus Predicted methyltransferase [General fun	96.51
PRK07417	279	arogenate dehydrogenase; Reviewed	96.5
cd08301	369	alcohol_DH_plants Plant alcohol dehydrogenase. NAD	96.47
PRK15057	388	UDP-glucose 6-dehydrogenase; Provisional	96.44
PRK06129	308	3-hydroxyacyl-CoA dehydrogenase; Validated	96.41
PF02254	116	TrkA_N: TrkA-N domain; InterPro: IPR003148 The reg	96.4
PRK07531	495	bifunctional 3-hydroxyacyl-CoA dehydrogenase/thioe	96.39
cd08294	329	leukotriene_B4_DH_like 13-PGR is a bifunctional en	96.39
cd08254	338	hydroxyacyl_CoA_DH 6-hydroxycyclohex-1-ene-1-carbo	96.36
cd08293	345	PTGR2 Prostaglandin reductase. Prostaglandins and	96.34
cd08295	338	double_bond_reductase_like Arabidopsis alkenal dou	96.34
PRK10083	339	putative oxidoreductase; Provisional	96.33
cd05188	271	MDR Medium chain reductase/dehydrogenase (MDR)/zin	96.31
PRK09422	338	ethanol-active dehydrogenase/acetaldehyde-active r	96.26
PRK11064	415	wecC UDP-N-acetyl-D-mannosamine dehydrogenase; Pro	96.24
PRK00066	315	ldh L-lactate dehydrogenase; Reviewed	96.22
TIGR02440	699	FadJ fatty oxidation complex, alpha subunit FadJ.	96.21
PLN02353	473	probable UDP-glucose 6-dehydrogenase	96.2
cd08232	339	idonate-5-DH L-idonate 5-dehydrogenase. L-idonate	96.19
PF04445	234	SAM_MT: Putative SAM-dependent methyltransferase;	96.17
COG0287	279	TyrA Prephenate dehydrogenase [Amino acid transpor	96.17
COG1250	307	FadB 3-hydroxyacyl-CoA dehydrogenase [Lipid metabo	96.15
COG0275	314	Predicted S-adenosylmethionine-dependent methyltra	96.14
COG0604	326	Qor NADPH:quinone reductase and related Zn-depende	96.09
PF00107	130	ADH_zinc_N: Zinc-binding dehydrogenase; InterPro:	96.09
cd08255	277	2-desacetyl-2-hydroxyethyl_bacteriochlorophyllide_	96.08
PRK05562	223	precorrin-2 dehydrogenase; Provisional	96.05
cd05213	311	NAD_bind_Glutamyl_tRNA_reduct NADP-binding domain	95.99
cd05297	423	GH4_alpha_glucosidase_galactosidase Glycoside Hydr	95.99
cd08242	319	MDR_like Medium chain dehydrogenases/reductase (MD	95.97
PF01795	310	Methyltransf_5: MraW methylase family; InterPro: I	95.97
TIGR01470	205	cysG_Nterm siroheme synthase, N-terminal domain. T	95.95
PRK06522	304	2-dehydropantoate 2-reductase; Reviewed	95.91
KOG2352	482	consensus Predicted spermine/spermidine synthase [	95.91
cd08231	361	MDR_TM0436_like Hypothetical enzyme TM0436 resembl	95.91
cd08291	324	ETR_like_1 2-enoyl thioester reductase (ETR) like	95.9
COG5459	484	Predicted rRNA methylase [Translation, ribosomal s	95.9
TIGR03026	411	NDP-sugDHase nucleotide sugar dehydrogenase. All o	95.88
COG1889	231	NOP1 Fibrillarin-like rRNA methylase [Translation,	95.83
PRK08507	275	prephenate dehydrogenase; Validated	95.82
PF02056	183	Glyco_hydro_4: Family 4 glycosyl hydrolase; InterP	95.81
PLN02256	304	arogenate dehydrogenase	95.81
cd05292	308	LDH_2 A subgroup of L-lactate dehydrogenases. L-la	95.79
PTZ00075	476	Adenosylhomocysteinase; Provisional	95.77
PRK12771	564	putative glutamate synthase (NADPH) small subunit;	95.75
PRK03562	621	glutathione-regulated potassium-efflux system prot	95.75
TIGR00872	298	gnd_rel 6-phosphogluconate dehydrogenase (decarbox	95.75
PTZ00082	321	L-lactate dehydrogenase; Provisional	95.74
PF03141	506	Methyltransf_29: Putative S-adenosyl-L-methionine-	95.72
cd08245	330	CAD Cinnamyl alcohol dehydrogenases (CAD) and rela	95.65
cd05285	343	sorbitol_DH Sorbitol dehydrogenase. Sorbitol and a	95.65
cd05293	312	LDH_1 A subgroup of L-lactate dehydrogenases. L-la	95.64
PRK08655	437	prephenate dehydrogenase; Provisional	95.62
KOG2940	325	consensus Predicted methyltransferase [General fun	95.62
PRK12921	305	2-dehydropantoate 2-reductase; Provisional	95.61
PF13241	103	NAD_binding_7: Putative NAD(P)-binding; PDB: 3DFZ_	95.57
PTZ00142	470	6-phosphogluconate dehydrogenase; Provisional	95.56
PRK15076	431	alpha-galactosidase; Provisional	95.51
PRK08229	341	2-dehydropantoate 2-reductase; Provisional	95.49
cd08286	345	FDH_like_ADH2 formaldehyde dehydrogenase (FDH)-lik	95.47
COG1189	245	Predicted rRNA methylase [Translation, ribosomal s	95.45
PRK00094	325	gpsA NAD(P)H-dependent glycerol-3-phosphate dehydr	95.45
cd05279	365	Zn_ADH1 Liver alcohol dehydrogenase and related zi	95.45
KOG0023	360	consensus Alcohol dehydrogenase, class V [Secondar	95.45
PLN02702	364	L-idonate 5-dehydrogenase	95.43
cd08298	329	CAD2 Cinnamyl alcohol dehydrogenases (CAD). These	95.43
PRK08324	681	short chain dehydrogenase; Validated	95.43
KOG1122	460	consensus tRNA and rRNA cytosine-C5-methylase (nuc	95.42
TIGR02354	200	thiF_fam2 thiamine biosynthesis protein ThiF, fami	95.41
PRK03659	601	glutathione-regulated potassium-efflux system prot	95.37
cd08265	384	Zn_ADH3 Alcohol dehydrogenases of the MDR family.	95.37
cd05291	306	HicDH_like L-2-hydroxyisocapronate dehydrogenases	95.36
cd08278	365	benzyl_alcohol_DH Benzyl alcohol dehydrogenase. Be	95.35
PTZ00117	319	malate dehydrogenase; Provisional	95.33
PRK14106	450	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	95.27
PHA01634	156	hypothetical protein	95.27
PRK01438	480	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	95.26
cd05288	329	PGDH Prostaglandin dehydrogenases. Prostaglandins	95.24
COG1004	414	Ugd Predicted UDP-glucose 6-dehydrogenase [Cell en	95.22
cd01339	300	LDH-like_MDH L-lactate dehydrogenase-like malate d	95.22
PRK05708	305	2-dehydropantoate 2-reductase; Provisional	95.19
PF03807	96	F420_oxidored: NADP oxidoreductase coenzyme F420-d	95.16
TIGR00692	340	tdh L-threonine 3-dehydrogenase. E. coli His-90 mo	95.15
KOG4058	199	consensus Uncharacterized conserved protein [Funct	95.14
PRK06223	307	malate dehydrogenase; Reviewed	95.13
PLN02712	667	arogenate dehydrogenase	95.13
cd05283	337	CAD1 Cinnamyl alcohol dehydrogenases (CAD). Cinnam	95.11
cd08282	375	PFDH_like Pseudomonas putida aldehyde-dismutating	95.11
PRK09496	453	trkA potassium transporter peripheral membrane com	95.1
PRK12480	330	D-lactate dehydrogenase; Provisional	95.08
PRK12769	654	putative oxidoreductase Fe-S binding subunit; Revi	95.08
PRK01747	662	mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltrans	95.07
PRK10669	558	putative cation:proton antiport protein; Provision	95.06
cd08299	373	alcohol_DH_class_I_II_IV class I, II, IV alcohol d	95.05
PRK09599	301	6-phosphogluconate dehydrogenase-like protein; Rev	95.03
cd05278	347	FDH_like Formaldehyde dehydrogenases. Formaldehyde	95.03
PLN02688	266	pyrroline-5-carboxylate reductase	95.02
PF02826	178	2-Hacid_dh_C: D-isomer specific 2-hydroxyacid dehy	95.02
PRK13771	334	putative alcohol dehydrogenase; Provisional	95.01
cd05296	419	GH4_P_beta_glucosidase Glycoside Hydrolases Family	95.01
PRK02705	459	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	94.97
PRK06545	359	prephenate dehydrogenase; Validated	94.92
KOG1501	636	consensus Arginine N-methyltransferase [General fu	94.86
cd08264	325	Zn_ADH_like2 Alcohol dehydrogenases of the MDR fam	94.84
cd08234	334	threonine_DH_like L-threonine dehydrogenase. L-thr	94.82
cd05298	437	GH4_GlvA_pagL_like Glycoside Hydrolases Family 4;	94.82
TIGR02853	287	spore_dpaA dipicolinic acid synthetase, A subunit.	94.82
PRK06718	202	precorrin-2 dehydrogenase; Reviewed	94.8
cd08236	343	sugar_DH NAD(P)-dependent sugar dehydrogenases. Th	94.8
PRK12809	639	putative oxidoreductase Fe-S binding subunit; Revi	94.77
cd08284	344	FDH_like_2 Glutathione-dependent formaldehyde dehy	94.73
PF01210	157	NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate	94.71
PRK05442	326	malate dehydrogenase; Provisional	94.7
PRK03369	488	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	94.69
cd05290	307	LDH_3 A subgroup of L-lactate dehydrogenases. L-la	94.66
COG4301	321	Uncharacterized conserved protein [Function unknow	94.65
PRK14806	735	bifunctional cyclohexadienyl dehydrogenase/ 3-phos	94.64
TIGR02356	202	adenyl_thiF thiazole biosynthesis adenylyltransfer	94.6
PRK06249	313	2-dehydropantoate 2-reductase; Provisional	94.6
PRK09496	453	trkA potassium transporter peripheral membrane com	94.58
cd08274	350	MDR9 Medium chain dehydrogenases/reductase (MDR)/z	94.54
COG1486	442	CelF Alpha-galactosidases/6-phospho-beta-glucosida	94.54
cd08248	350	RTN4I1 Human Reticulon 4 Interacting Protein 1. Hu	94.54
PF03446	163	NAD_binding_2: NAD binding domain of 6-phosphogluc	94.53
cd08244	324	MDR_enoyl_red Possible enoyl reductase. Member ide	94.52
COG1748	389	LYS9 Saccharopine dehydrogenase and related protei	94.51
PRK12490	299	6-phosphogluconate dehydrogenase-like protein; Rev	94.5
PRK05786	238	fabG 3-ketoacyl-(acyl-carrier-protein) reductase;	94.49
PRK12491	272	pyrroline-5-carboxylate reductase; Reviewed	94.48
TIGR01318	467	gltD_gamma_fam glutamate synthase small subunit fa	94.46
PRK14618	328	NAD(P)H-dependent glycerol-3-phosphate dehydrogena	94.44
cd08261	337	Zn_ADH7 Alcohol dehydrogenases of the MDR family.	94.44
cd01338	322	MDH_choloroplast_like Chloroplast-like malate dehy	94.43
cd05286	320	QOR2 Quinone oxidoreductase (QOR). Quinone oxidore	94.42
cd05197	425	GH4_glycoside_hydrolases Glycoside Hydrases Family	94.38
cd00650	263	LDH_MDH_like NAD-dependent, lactate dehydrogenase-	94.38
cd08260	345	Zn_ADH6 Alcohol dehydrogenases of the MDR family.	94.34
KOG4589	232	consensus Cell division protein FtsJ [Cell cycle c	94.33
COG1867	380	TRM1 N2,N2-dimethylguanosine tRNA methyltransferas	94.31
COG0569	225	TrkA K+ transport systems, NAD-binding component [	94.31
cd08246	393	crotonyl_coA_red crotonyl-CoA reductase. Crotonyl-	94.27
PLN02350	493	phosphogluconate dehydrogenase (decarboxylating)	94.26
cd08287	345	FDH_like_ADH3 formaldehyde dehydrogenase (FDH)-lik	94.26
PLN02712	667	arogenate dehydrogenase	94.25
PRK11199	374	tyrA bifunctional chorismate mutase/prephenate deh	94.22
PF05711	248	TylF: Macrocin-O-methyltransferase (TylF); InterPr	94.21
cd08279	363	Zn_ADH_class_III Class III alcohol dehydrogenase.	94.21
PRK08217	253	fabG 3-ketoacyl-(acyl-carrier-protein) reductase;	94.17
TIGR01915	219	npdG NADPH-dependent F420 reductase. This model re	94.17
TIGR01759	323	MalateDH-SF1 malate dehydrogenase. This model repr	94.16
cd08240	350	6_hydroxyhexanoate_dh_like 6-hydroxyhexanoate dehy	94.15
PRK12779	944	putative bifunctional glutamate synthase subunit b	94.11
cd08289	326	MDR_yhfp_like Yhfp putative quinone oxidoreductase	94.1
KOG0022	375	consensus Alcohol dehydrogenase, class III [Second	94.09
PRK13243	333	glyoxylate reductase; Reviewed	94.09
PRK11559	296	garR tartronate semialdehyde reductase; Provisiona	94.07
cd08241	323	QOR1 Quinone oxidoreductase (QOR). QOR catalyzes t	94.06
cd05289	309	MDR_like_2 alcohol dehydrogenase and quinone reduc	94.04
PRK12826	251	3-ketoacyl-(acyl-carrier-protein) reductase; Revie	94.03
PRK06940	275	short chain dehydrogenase; Provisional	94.03
COG0078	310	ArgF Ornithine carbamoyltransferase [Amino acid tr	94.01
PF01488	135	Shikimate_DH: Shikimate / quinate 5-dehydrogenase;	94.0
KOG2798	369	consensus Putative trehalase [Carbohydrate transpo	93.96
PLN02928	347	oxidoreductase family protein	93.95
cd08243	320	quinone_oxidoreductase_like_1 Quinone oxidoreducta	93.91
PRK06719	157	precorrin-2 dehydrogenase; Validated	93.9
COG3288	356	PntA NAD/NADP transhydrogenase alpha subunit [Ener	93.87
cd01065	155	NAD_bind_Shikimate_DH NAD(P) binding domain of Shi	93.87
COG2084	286	MmsB 3-hydroxyisobutyrate dehydrogenase and relate	93.85
PRK07679	279	pyrroline-5-carboxylate reductase; Reviewed	93.84
cd08297	341	CAD3 Cinnamyl alcohol dehydrogenases (CAD). These	93.83
PRK05479	330	ketol-acid reductoisomerase; Provisional	93.82
cd08292	324	ETR_like_2 2-enoyl thioester reductase (ETR) like	93.81
cd08263	367	Zn_ADH10 Alcohol dehydrogenases of the MDR family.	93.79
cd08290	341	ETR 2-enoyl thioester reductase (ETR). 2-enoyl thi	93.78
cd08276	336	MDR7 Medium chain dehydrogenases/reductase (MDR)/z	93.77
PRK12475	338	thiamine/molybdopterin biosynthesis MoeB-like prot	93.76
PF02558	151	ApbA: Ketopantoate reductase PanE/ApbA; InterPro:	93.75
PRK08818	370	prephenate dehydrogenase; Provisional	93.73
PRK05396	341	tdh L-threonine 3-dehydrogenase; Validated	93.71
PLN02602	350	lactate dehydrogenase	93.69
cd00300	300	LDH_like L-lactate dehydrogenase-like enzymes. Mem	93.67
PRK10637	457	cysG siroheme synthase; Provisional	93.59
COG0493	457	GltD NADPH-dependent glutamate synthase beta chain	93.56
cd01487	174	E1_ThiF_like E1_ThiF_like. Member of superfamily o	93.55
cd08235	343	iditol_2_DH_like L-iditol 2-dehydrogenase. Putativ	93.49
cd01491	286	Ube1_repeat1 Ubiquitin activating enzyme (E1), rep	93.44
PRK00141	473	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	93.38

>PF03059 NAS: Nicotianamine synthase protein; InterPro: IPR004298 Nicotianamine synthase 2

Probab=100.00  E-value=4.9e-77  Score=545.03  Aligned_cols=271  Identities=51%  Similarity=0.801  Sum_probs=168.2

Q ss_pred             CCchHHHHHHHHHHHHHhccCCCCCChhhHHHHHHHHHHhhcCCcccccccCchhHHHHHHHHHHHHHHHhHhhhHHHHH
Q 042119           12 QIPAELLIASVMQIHASISKLESLKPSKQVNSIFSRLVKLCTIPSSIDITALPQEVQKMRESLIVLCGRAEGLLELEFAT   91 (286)
Q Consensus        12 ~~~~~~~i~~i~~~~~~i~~l~~l~p~~~vn~lf~~Lv~~c~~~~~~~~~~~~~~~~~l~~~l~~l~~~~e~~lE~~~A~   91 (286)
                      +.++|.+|++|+++|++|++|+||+|||+||+||++||++|.+++++|++++++++++++++|+++|++||+.||.|||+
T Consensus         2 ~~~~~~lv~~i~~ly~~i~~L~sl~ps~~vn~lF~~Lv~~c~~~~~~dv~~L~~~i~~~~~~L~~~~~~ae~~LE~~~A~   81 (276)
T PF03059_consen    2 NKEAEALVEKILSLYAQISKLESLSPSPEVNALFTQLVSLCIPPSPIDVTKLSPEIQSIRPSLRRLCSEAEGLLESHWAK   81 (276)
T ss_dssp             ----------------------------------------------------TGGGHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CccccccccccccccccccccccccccccccccccccccccccccccccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            35689999999999999999999999999999999999999999999999888999999999999999999999999999


Q ss_pred             HhcCCCCcccccccCcCccchhhhhHHHHHHHHhcCCCCCCEEEEeccCCChhhHHHHHhhcCCCcEEEEEeCChHHHHH
Q 042119           92 FLTKIPQPLNNLSLFPYYGNYVKLSKLEYTILSENGVVQPKKVAFVGSGPMPLTSIIMAKHHLTSTHFDNFDIDEAANDV  171 (286)
Q Consensus        92 ~l~~~~~p~~~L~~fpy~~ny~~l~~~E~~~l~~~~~~~~~~VL~IG~G~lp~tai~lA~~~~~g~~V~~iDid~~ai~~  171 (286)
                      .+++.++||++|+.||||+||++|+++|++++.......|+||+||||||+|+|+++||+++.+++.|+|||+||+|++.
T Consensus        82 ~l~~~~~p~~~L~~FpYy~nY~~L~~lE~~~l~~~~~~~p~rVaFIGSGPLPlT~i~la~~~~~~~~v~~iD~d~~A~~~  161 (276)
T PF03059_consen   82 RLLASDNPLDHLESFPYYPNYEKLVRLEYAALRIHAGDPPSRVAFIGSGPLPLTSIVLAKQHGPGARVHNIDIDPEANEL  161 (276)
T ss_dssp             HHHH-SSHHHHHHTSTTHHHHHHHHHHHHH-HTT--TT---EEEEE---SS-HHHHHHH--HTT--EEEEEESSHHHHHH
T ss_pred             HHHhCCCHHHHHhcCCcHHHHHHHHHHHHHHHhhcCCcccceEEEEcCCCcchHHHHHHHHhCCCCeEEEEeCCHHHHHH
Confidence            99999999999999999999999999999999877767789999999999999999999877789999999999999999


Q ss_pred             HHHHHH-hcCCCCCCeEEEEccccchhhcCCCcceeehhhhccCChhHHHHHHHHHHhhccCCcEEEEeecCcceeeecc
Q 042119          172 ARSIVA-SDAEFEGRMKFLTRDIMEVKEQLGEYDCIFLAALVGMSKEEKLTILGHIRKYMKDGGILLVRSAKGARAFLYP  250 (286)
Q Consensus       172 Ar~~~~-~~g~l~~~i~f~~~D~~~~~~~l~~fD~V~~aalvg~~~~~k~~vl~~l~~~l~pgg~lv~r~~~g~r~~lyp  250 (286)
                      |+++++ ..| ++++|+|+++|+.+...++.+||+||+|++|||++++|.+++++++++|+||++|++|+++|+|+|+||
T Consensus       162 a~~lv~~~~~-L~~~m~f~~~d~~~~~~dl~~~DvV~lAalVg~~~e~K~~Il~~l~~~m~~ga~l~~Rsa~GlR~~LYp  240 (276)
T PF03059_consen  162 ARRLVASDLG-LSKRMSFITADVLDVTYDLKEYDVVFLAALVGMDAEPKEEILEHLAKHMAPGARLVVRSAHGLRSFLYP  240 (276)
T ss_dssp             HHHHHH---H-H-SSEEEEES-GGGG-GG----SEEEE-TT-S----SHHHHHHHHHHHS-TTSEEEEEE--GGGGGSS-
T ss_pred             HHHHHhhccc-ccCCeEEEecchhccccccccCCEEEEhhhcccccchHHHHHHHHHhhCCCCcEEEEecchhhHHHcCC
Confidence            999999 567 789999999999998888899999999999999999999999999999999999999999999999999


Q ss_pred             cCCcccccCcEEEEEecCcccceeeeEEEeecC
Q 042119          251 VVVEHDLLDFEVLSAVHPNDDVINSVVLVRNSQ  283 (286)
Q Consensus       251 ~v~~~~l~gf~~~~~~~P~~~vinsvi~~r~~~  283 (286)
                      +++++++.||+++.++||+++|||||||+||+.
T Consensus       241 ~vd~~~l~gf~~~~~~hP~~~ViNSvv~~rk~~  273 (276)
T PF03059_consen  241 VVDPEDLRGFEVLAVVHPTDEVINSVVFARKKQ  273 (276)
T ss_dssp             ---TGGGTTEEEEEEE---TT---EEEEE----
T ss_pred             CCChHHCCCeEEEEEECCCCCceeEEEEEEecc
Confidence            999999999999999999999999999999964

5.1.43 from EC catalyzes the trimerization of S-adenosylmethionine to yield one molecule of nicotianamine. Nicotianamine has an important role in plant iron uptake mechanisms. Plants adopt two strategies (termed I and II) of iron acquisition. Strategy I is adopted by all higher plants except graminaceous plants, which adopt strategy II [, ]. In strategy I plants, the role of nicotianamine is not fully determined: possible roles include the formation of more stable complexes with ferrous than with ferric ion, which might serve as a sensor of the physiological status of iron within a plant, or which might be involved in the transport of iron []. In strategy II (graminaceous) plants, nicotianamine is the key intermediate (and nicotianamine synthase the key enzyme) in the synthesis of the mugineic family (the only known family in plants) of phytosiderophores. Phytosiderophores are iron chelators whose secretion by the roots is greatly increased in instances of iron deficiency []. The 3D structures of five example NAS from Methanothermobacter thermautotrophicus reveal the monomer to consist of a five-helical bundle N-terminal domain on top of a classic Rossmann fold C-terminal domain. The N-terminal domain is unique to the NAS family, whereas the C-terminal domain is homologous to the class I family of SAM-dependent methyltransferases. An active site is created at the interface of the two domains, at the rim of a large cavity that corresponds to the nucleotide binding site such as is found in other proteins adopting a Rossmann fold [].; GO: 0030410 nicotianamine synthase activity, 0030418 nicotianamine biosynthetic process; PDB: 3O31_B 3FPH_A 3FPJ_A 3FPE_B 3FPF_B 3FPG_B.

>PLN03075 nicotianamine synthase; Provisional

Probab=100.00  E-value=9.4e-75  Score=534.62  Aligned_cols=274  Identities=58%  Similarity=0.912  Sum_probs=262.5

Q ss_pred             CCCCCCchHHHHHHHHHHHHHhccCCCCCChhhHHHHHHHHHHhhcCCcccccccCchhHHHHHHHHHHHHHHHhHhhhH
Q 042119            8 SCESQIPAELLIASVMQIHASISKLESLKPSKQVNSIFSRLVKLCTIPSSIDITALPQEVQKMRESLIVLCGRAEGLLEL   87 (286)
Q Consensus         8 ~~~~~~~~~~~i~~i~~~~~~i~~l~~l~p~~~vn~lf~~Lv~~c~~~~~~~~~~~~~~~~~l~~~l~~l~~~~e~~lE~   87 (286)
                      +++..+++|.+|++|+++|++|++|++|+||++||+||++||++|+++.++|++.+++++|++|++|+++|++||+.||.
T Consensus         1 ~~~~~~~~~~~i~~i~~~y~~i~~l~~l~ps~~v~~lf~~Lv~~c~~~~~~~~~~l~~~i~~~~~~l~~l~~~ae~~lE~   80 (296)
T PLN03075          1 SEEMGCQEELLVEKICDLYAQISKLESLKPSKEVNTLFTQLVSTCIPPSSIDVTKLCEEIQEMRSKLIKLCGEAEGLLEA   80 (296)
T ss_pred             CccchhhHHHHHHHHHHHHHHHhhCcccCCchhHHHHHHHHHHHhCCCCcchHHHhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence            35667889999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHhcCCCCcccccccCcCccchhhhhHHHHHHHHhcCCCCCCEEEEeccCCChhhHHHHHhhcCCCcEEEEEeCChH
Q 042119           88 EFATFLTKIPQPLNNLSLFPYYGNYVKLSKLEYTILSENGVVQPKKVAFVGSGPMPLTSIIMAKHHLTSTHFDNFDIDEA  167 (286)
Q Consensus        88 ~~A~~l~~~~~p~~~L~~fpy~~ny~~l~~~E~~~l~~~~~~~~~~VL~IG~G~lp~tai~lA~~~~~g~~V~~iDid~~  167 (286)
                      |||+.+++.++||++|+.||||+||++|.+.|++.|......++++|+||||||+|+|+++++++++|+++|+|||+|++
T Consensus        81 ~~a~~i~~~~~p~~~l~~Fpy~~nY~~L~~lE~~~L~~~~~~~p~~VldIGcGpgpltaiilaa~~~p~~~~~giD~d~~  160 (296)
T PLN03075         81 HFSTILGSFDNPLDHLNLFPYYNNYLKLSKLEFDLLSQHVNGVPTKVAFVGSGPLPLTSIVLAKHHLPTTSFHNFDIDPS  160 (296)
T ss_pred             HHHHHHhcCCcHHHHhhcCCchHHHHHHHHHHHHHHHHhhcCCCCEEEEECCCCcHHHHHHHHHhcCCCCEEEEEeCCHH
Confidence            99999999999999999999999999999999999988877799999999999999999999987889999999999999


Q ss_pred             HHHHHHHHHHh-cCCCCCCeEEEEccccchhhcCCCcceeehhhhccCChhHHHHHHHHHHhhccCCcEEEEeecCccee
Q 042119          168 ANDVARSIVAS-DAEFEGRMKFLTRDIMEVKEQLGEYDCIFLAALVGMSKEEKLTILGHIRKYMKDGGILLVRSAKGARA  246 (286)
Q Consensus       168 ai~~Ar~~~~~-~g~l~~~i~f~~~D~~~~~~~l~~fD~V~~aalvg~~~~~k~~vl~~l~~~l~pgg~lv~r~~~g~r~  246 (286)
                      +++.||+++++ .| +.++|+|+++|+.+....+++||+||.+++++|++++|.++++++++.|+|||++++|++||+|+
T Consensus       161 ai~~Ar~~~~~~~g-L~~rV~F~~~Da~~~~~~l~~FDlVF~~ALi~~dk~~k~~vL~~l~~~LkPGG~Lvlr~~~G~r~  239 (296)
T PLN03075        161 ANDVARRLVSSDPD-LSKRMFFHTADVMDVTESLKEYDVVFLAALVGMDKEEKVKVIEHLGKHMAPGALLMLRSAHGARA  239 (296)
T ss_pred             HHHHHHHHhhhccC-ccCCcEEEECchhhcccccCCcCEEEEecccccccccHHHHHHHHHHhcCCCcEEEEecccchHh
Confidence            99999999965 78 78999999999988655567899999999999999999999999999999999999999999999


Q ss_pred             eecccCCcccccCcEEEEEecCcccceeeeEEEeec
Q 042119          247 FLYPVVVEHDLLDFEVLSAVHPNDDVINSVVLVRNS  282 (286)
Q Consensus       247 ~lyp~v~~~~l~gf~~~~~~~P~~~vinsvi~~r~~  282 (286)
                      ||||+|++++++||+++.++||+++|||||||+||+
T Consensus       240 ~LYp~v~~~~~~gf~~~~~~~P~~~v~Nsvi~~r~~  275 (296)
T PLN03075        240 FLYPVVDPCDLRGFEVLSVFHPTDEVINSVIIARKP  275 (296)
T ss_pred             hcCCCCChhhCCCeEEEEEECCCCCceeeEEEEEee
Confidence            999999999999999999999999999999999996

>PF12847 Methyltransf_18: Methyltransferase domain; PDB: 3G2Q_A 3G2O_A 3G2M_B 3G2P_B 3D2L_B 1IM8_B 3NJR_A 3E05_H 3EVZ_A 3HM2_A

Probab=99.75  E-value=7.9e-18  Score=132.80  Aligned_cols=107  Identities=23%  Similarity=0.399  Sum_probs=88.0

Q ss_pred             CCCEEEEeccCCChhhHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEccccchhh-cCCCcceeeh
Q 042119          130 QPKKVAFVGSGPMPLTSIIMAKHHLTSTHFDNFDIDEAANDVARSIVASDAEFEGRMKFLTRDIMEVKE-QLGEYDCIFL  208 (286)
Q Consensus       130 ~~~~VL~IG~G~lp~tai~lA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~g~l~~~i~f~~~D~~~~~~-~l~~fD~V~~  208 (286)
                      |+.+|||||||+ |..++.+++ ..++++|+|+|+||++++.|++.+.+.+ ..++|+|+++|+ .... ....||+|+.
T Consensus         1 p~~~vLDlGcG~-G~~~~~l~~-~~~~~~v~gvD~s~~~~~~a~~~~~~~~-~~~~i~~~~~d~-~~~~~~~~~~D~v~~   76 (112)
T PF12847_consen    1 PGGRVLDLGCGT-GRLSIALAR-LFPGARVVGVDISPEMLEIARERAAEEG-LSDRITFVQGDA-EFDPDFLEPFDLVIC   76 (112)
T ss_dssp             TTCEEEEETTTT-SHHHHHHHH-HHTTSEEEEEESSHHHHHHHHHHHHHTT-TTTTEEEEESCC-HGGTTTSSCEEEEEE
T ss_pred             CCCEEEEEcCcC-CHHHHHHHh-cCCCCEEEEEeCCHHHHHHHHHHHHhcC-CCCCeEEEECcc-ccCcccCCCCCEEEE
Confidence            578999999996 677788887 4699999999999999999999997777 689999999999 3222 3357999997


Q ss_pred             hh-hc-cC-ChhHHHHHHHHHHhhccCCcEEEEee
Q 042119          209 AA-LV-GM-SKEEKLTILGHIRKYMKDGGILLVRS  240 (286)
Q Consensus       209 aa-lv-g~-~~~~k~~vl~~l~~~l~pgg~lv~r~  240 (286)
                      .. .. .+ +.+++.++++++.+.|+|||++++.+
T Consensus        77 ~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~lvi~~  111 (112)
T PF12847_consen   77 SGFTLHFLLPLDERRRVLERIRRLLKPGGRLVINT  111 (112)
T ss_dssp             CSGSGGGCCHHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred             CCCccccccchhHHHHHHHHHHHhcCCCcEEEEEE
Confidence            76 11 11 22678899999999999999999875

...

>PLN02244 tocopherol O-methyltransferase

Probab=99.68  E-value=1e-15  Score=145.13  Aligned_cols=159  Identities=15%  Similarity=0.277  Sum_probs=120.1

Q ss_pred             hHHHHHHHHHHHHHHHhHhhhHHHHHHhcCCCCcccccccCcCccc------h-hhhhHHHHHHHHhcCC-----CCCCE
Q 042119           66 EVQKMRESLIVLCGRAEGLLELEFATFLTKIPQPLNNLSLFPYYGN------Y-VKLSKLEYTILSENGV-----VQPKK  133 (286)
Q Consensus        66 ~~~~l~~~l~~l~~~~e~~lE~~~A~~l~~~~~p~~~L~~fpy~~n------y-~~l~~~E~~~l~~~~~-----~~~~~  133 (286)
                      ...++.++++..+.+....+|..|.+.+.           +.||+.      + ....++....+...++     .++.+
T Consensus        53 ~~~~~~~~i~~~Yd~~~~~~e~~~g~~~h-----------~g~~~~~~~~~~~~~aq~~~~~~~l~~~~~~~~~~~~~~~  121 (340)
T PLN02244         53 ATADLKEGIAEFYDESSGVWEDVWGEHMH-----------HGYYDPGASRGDHRQAQIRMIEESLAWAGVPDDDEKRPKR  121 (340)
T ss_pred             chhhHHHHHHHHHccchHHHHHHhCCcce-----------eeccCCCCCcccHHHHHHHHHHHHHHhcCCCcccCCCCCe
Confidence            44567788899998888888888766553           233322      1 1222232334444455     67899


Q ss_pred             EEEeccCCChhhHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEccccchhhcCCCcceeehhhhcc
Q 042119          134 VAFVGSGPMPLTSIIMAKHHLTSTHFDNFDIDEAANDVARSIVASDAEFEGRMKFLTRDIMEVKEQLGEYDCIFLAALVG  213 (286)
Q Consensus       134 VL~IG~G~lp~tai~lA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~g~l~~~i~f~~~D~~~~~~~l~~fD~V~~aalvg  213 (286)
                      |||||||+ |..+..+++.  .|++|+|||+|+.+++.|+++++..| +.++++|+++|+.+.+...+.||+|+..... 
T Consensus       122 VLDiGCG~-G~~~~~La~~--~g~~v~gvD~s~~~i~~a~~~~~~~g-~~~~v~~~~~D~~~~~~~~~~FD~V~s~~~~-  196 (340)
T PLN02244        122 IVDVGCGI-GGSSRYLARK--YGANVKGITLSPVQAARANALAAAQG-LSDKVSFQVADALNQPFEDGQFDLVWSMESG-  196 (340)
T ss_pred             EEEecCCC-CHHHHHHHHh--cCCEEEEEECCHHHHHHHHHHHHhcC-CCCceEEEEcCcccCCCCCCCccEEEECCch-
Confidence            99999996 5667788873  48999999999999999999999888 6789999999998877766789999854322 


Q ss_pred             CChhHHHHHHHHHHhhccCCcEEEEee
Q 042119          214 MSKEEKLTILGHIRKYMKDGGILLVRS  240 (286)
Q Consensus       214 ~~~~~k~~vl~~l~~~l~pgg~lv~r~  240 (286)
                      .+.+++.++++++.+.|||||.+++.+
T Consensus       197 ~h~~d~~~~l~e~~rvLkpGG~lvi~~  223 (340)
T PLN02244        197 EHMPDKRKFVQELARVAAPGGRIIIVT  223 (340)
T ss_pred             hccCCHHHHHHHHHHHcCCCcEEEEEE
Confidence            234678899999999999999998854

>COG2226 UbiE Methylase involved in ubiquinone/menaquinone biosynthesis [Coenzyme metabolism]

Probab=99.66  E-value=6e-16  Score=139.67  Aligned_cols=109  Identities=21%  Similarity=0.297  Sum_probs=94.7

Q ss_pred             CCCCCCEEEEeccCCChhhHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEccccchhhcCCCccee
Q 042119          127 GVVQPKKVAFVGSGPMPLTSIIMAKHHLTSTHFDNFDIDEAANDVARSIVASDAEFEGRMKFLTRDIMEVKEQLGEYDCI  206 (286)
Q Consensus       127 ~~~~~~~VL~IG~G~lp~tai~lA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~g~l~~~i~f~~~D~~~~~~~l~~fD~V  206 (286)
                      +..+|.+|||||||+ |--++.+++. .+.++|+++|+|+.|++.|++.....| ... ++|++||++++|++.+.||+|
T Consensus        48 ~~~~g~~vLDva~GT-Gd~a~~~~k~-~g~g~v~~~D~s~~ML~~a~~k~~~~~-~~~-i~fv~~dAe~LPf~D~sFD~v  123 (238)
T COG2226          48 GIKPGDKVLDVACGT-GDMALLLAKS-VGTGEVVGLDISESMLEVAREKLKKKG-VQN-VEFVVGDAENLPFPDNSFDAV  123 (238)
T ss_pred             CCCCCCEEEEecCCc-cHHHHHHHHh-cCCceEEEEECCHHHHHHHHHHhhccC-ccc-eEEEEechhhCCCCCCccCEE
Confidence            445899999999996 7888999984 558999999999999999999999988 454 999999999999999999999


Q ss_pred             ehhhhccCChhHHHHHHHHHHhhccCCcEEEEee
Q 042119          207 FLAALVGMSKEEKLTILGHIRKYMKDGGILLVRS  240 (286)
Q Consensus       207 ~~aalvg~~~~~k~~vl~~l~~~l~pgg~lv~r~  240 (286)
                      .++..+- ...++.++|+++.|+|||||++++-+
T Consensus       124 t~~fglr-nv~d~~~aL~E~~RVlKpgG~~~vle  156 (238)
T COG2226         124 TISFGLR-NVTDIDKALKEMYRVLKPGGRLLVLE  156 (238)
T ss_pred             Eeeehhh-cCCCHHHHHHHHHHhhcCCeEEEEEE
Confidence            8775431 23688899999999999999988854

>PF01209 Ubie_methyltran: ubiE/COQ5 methyltransferase family; InterPro: IPR004033 A number of methyltransferases have been shown to share regions of similarities []

Probab=99.64  E-value=7.8e-16  Score=138.84  Aligned_cols=110  Identities=16%  Similarity=0.203  Sum_probs=80.3

Q ss_pred             CCCCCCEEEEeccCCChhhHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEccccchhhcCCCccee
Q 042119          127 GVVQPKKVAFVGSGPMPLTSIIMAKHHLTSTHFDNFDIDEAANDVARSIVASDAEFEGRMKFLTRDIMEVKEQLGEYDCI  206 (286)
Q Consensus       127 ~~~~~~~VL~IG~G~lp~tai~lA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~g~l~~~i~f~~~D~~~~~~~l~~fD~V  206 (286)
                      ...++.+|||+|||+ |..+..++++..++++|+++|+|++|++.|++.+...|.  .+|+|+++|+.+++.+.+.||+|
T Consensus        44 ~~~~g~~vLDv~~Gt-G~~~~~l~~~~~~~~~v~~vD~s~~ML~~a~~k~~~~~~--~~i~~v~~da~~lp~~d~sfD~v  120 (233)
T PF01209_consen   44 GLRPGDRVLDVACGT-GDVTRELARRVGPNGKVVGVDISPGMLEVARKKLKREGL--QNIEFVQGDAEDLPFPDNSFDAV  120 (233)
T ss_dssp             T--S--EEEEET-TT-SHHHHHHGGGSS---EEEEEES-HHHHHHHHHHHHHTT----SEEEEE-BTTB--S-TT-EEEE
T ss_pred             CCCCCCEEEEeCCCh-HHHHHHHHHHCCCccEEEEecCCHHHHHHHHHHHHhhCC--CCeeEEEcCHHHhcCCCCceeEE
Confidence            457889999999997 677788887556778999999999999999999999883  49999999999999887889999


Q ss_pred             ehhhhccCChhHHHHHHHHHHhhccCCcEEEEee
Q 042119          207 FLAALVGMSKEEKLTILGHIRKYMKDGGILLVRS  240 (286)
Q Consensus       207 ~~aalvg~~~~~k~~vl~~l~~~l~pgg~lv~r~  240 (286)
                      +++..+ .+.+++.+.+++++|+|||||.+++-+
T Consensus       121 ~~~fgl-rn~~d~~~~l~E~~RVLkPGG~l~ile  153 (233)
T PF01209_consen  121 TCSFGL-RNFPDRERALREMYRVLKPGGRLVILE  153 (233)
T ss_dssp             EEES-G-GG-SSHHHHHHHHHHHEEEEEEEEEEE
T ss_pred             EHHhhH-HhhCCHHHHHHHHHHHcCCCeEEEEee
Confidence            866543 133578889999999999999988854

Apart from the ubiquinone/menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the ubiE gene of Escherichia coli), the ubiquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the COQ5 gene of Saccharomyces cerevisiae) and the menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the MENH gene of Bacillus subtilis), this family also includes methyltransferases involved in biotin and sterol biosynthesis and in phosphatidylethanolamine methylation.; GO: 0008168 methyltransferase activity; PDB: 1VL5_C.

>PF01596 Methyltransf_3: O-methyltransferase; InterPro: IPR002935 Members of this family are O-methyltransferases

Probab=99.64  E-value=7.8e-16  Score=136.34  Aligned_cols=107  Identities=20%  Similarity=0.410  Sum_probs=94.0

Q ss_pred             CCCCEEEEeccCCChhhHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEccccchhhcC------CC
Q 042119          129 VQPKKVAFVGSGPMPLTSIIMAKHHLTSTHFDNFDIDEAANDVARSIVASDAEFEGRMKFLTRDIMEVKEQL------GE  202 (286)
Q Consensus       129 ~~~~~VL~IG~G~lp~tai~lA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~g~l~~~i~f~~~D~~~~~~~l------~~  202 (286)
                      ..+++||+||+| .|+|+++||+...++++|+++|+|++..+.|++.+++.| ++++|+++.||+.+....+      +.
T Consensus        44 ~~~k~vLEIGt~-~GySal~la~~l~~~g~i~tiE~~~~~~~~A~~~~~~ag-~~~~I~~~~gda~~~l~~l~~~~~~~~  121 (205)
T PF01596_consen   44 TRPKRVLEIGTF-TGYSALWLAEALPEDGKITTIEIDPERAEIARENFRKAG-LDDRIEVIEGDALEVLPELANDGEEGQ  121 (205)
T ss_dssp             HT-SEEEEESTT-TSHHHHHHHHTSTTTSEEEEEESSHHHHHHHHHHHHHTT-GGGGEEEEES-HHHHHHHHHHTTTTTS
T ss_pred             cCCceEEEeccc-cccHHHHHHHhhcccceEEEecCcHHHHHHHHHHHHhcC-CCCcEEEEEeccHhhHHHHHhccCCCc
Confidence            578999999999 699999999854458999999999999999999999999 8999999999998865432      36


Q ss_pred             cceeehhhhccCChhHHHHHHHHHHhhccCCcEEEEeec
Q 042119          203 YDCIFLAALVGMSKEEKLTILGHIRKYMKDGGILLVRSA  241 (286)
Q Consensus       203 fD~V~~aalvg~~~~~k~~vl~~l~~~l~pgg~lv~r~~  241 (286)
                      ||+||+++-.    .++...++.+.+.|+|||++++.+.
T Consensus       122 fD~VFiDa~K----~~y~~y~~~~~~ll~~ggvii~DN~  156 (205)
T PF01596_consen  122 FDFVFIDADK----RNYLEYFEKALPLLRPGGVIIADNV  156 (205)
T ss_dssp             EEEEEEESTG----GGHHHHHHHHHHHEEEEEEEEEETT
T ss_pred             eeEEEEcccc----cchhhHHHHHhhhccCCeEEEEccc
Confidence            9999999864    7888999999999999999999984

The family includes also bacterial O-methyltransferases that may be involved in antibiotic production [].; GO: 0008171 O-methyltransferase activity; PDB: 1SUI_C 1SUS_D 3CBG_A 2GPY_B 3TR6_A 2AVD_A 3DUL_B 3DUW_B 2ZTH_A 1VID_A ....

>PF13847 Methyltransf_31: Methyltransferase domain; PDB: 3T0I_B 3SVZ_B 3SXJ_A 3F4K_A 3GU3_B 2GH1_A 1R8Y_E 1R8X_B 2B3T_A 1T43_A

Probab=99.63  E-value=2.9e-15  Score=125.42  Aligned_cols=110  Identities=22%  Similarity=0.352  Sum_probs=90.7

Q ss_pred             CCCCEEEEeccCCChhhHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEccccchhhcC-CCcceee
Q 042119          129 VQPKKVAFVGSGPMPLTSIIMAKHHLTSTHFDNFDIDEAANDVARSIVASDAEFEGRMKFLTRDIMEVKEQL-GEYDCIF  207 (286)
Q Consensus       129 ~~~~~VL~IG~G~lp~tai~lA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~g~l~~~i~f~~~D~~~~~~~l-~~fD~V~  207 (286)
                      +.+.+|||+|||+ |..+..++++..++++|+|+|+|+++++.|++.++..| +. +++|+++|+.+++..+ +.||+|+
T Consensus         2 ~~~~~iLDlGcG~-G~~~~~l~~~~~~~~~i~gvD~s~~~i~~a~~~~~~~~-~~-ni~~~~~d~~~l~~~~~~~~D~I~   78 (152)
T PF13847_consen    2 KSNKKILDLGCGT-GRLLIQLAKELNPGAKIIGVDISEEMIEYAKKRAKELG-LD-NIEFIQGDIEDLPQELEEKFDIII   78 (152)
T ss_dssp             TTTSEEEEET-TT-SHHHHHHHHHSTTTSEEEEEESSHHHHHHHHHHHHHTT-ST-TEEEEESBTTCGCGCSSTTEEEEE
T ss_pred             CCCCEEEEecCcC-cHHHHHHHHhcCCCCEEEEEECcHHHHHHhhccccccc-cc-ccceEEeehhccccccCCCeeEEE
Confidence            4678999999996 66678888435789999999999999999999999999 44 9999999999855223 6899999


Q ss_pred             hhhhccCChhHHHHHHHHHHhhccCCcEEEEeecC
Q 042119          208 LAALVGMSKEEKLTILGHIRKYMKDGGILLVRSAK  242 (286)
Q Consensus       208 ~aalvg~~~~~k~~vl~~l~~~l~pgg~lv~r~~~  242 (286)
                      ..... .+..+...+++.+.+.|++||++++.+..
T Consensus        79 ~~~~l-~~~~~~~~~l~~~~~~lk~~G~~i~~~~~  112 (152)
T PF13847_consen   79 SNGVL-HHFPDPEKVLKNIIRLLKPGGILIISDPN  112 (152)
T ss_dssp             EESTG-GGTSHHHHHHHHHHHHEEEEEEEEEEEEE
T ss_pred             EcCch-hhccCHHHHHHHHHHHcCCCcEEEEEECC
Confidence            76543 23357778999999999999999998754

...

>COG4122 Predicted O-methyltransferase [General function prediction only]

Probab=99.62  E-value=2.4e-15  Score=134.10  Aligned_cols=106  Identities=21%  Similarity=0.414  Sum_probs=96.2

Q ss_pred             CCCCEEEEeccCCChhhHHHHHhhcCC-CcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEE-ccccchhhc--CCCcc
Q 042119          129 VQPKKVAFVGSGPMPLTSIIMAKHHLT-STHFDNFDIDEAANDVARSIVASDAEFEGRMKFLT-RDIMEVKEQ--LGEYD  204 (286)
Q Consensus       129 ~~~~~VL~IG~G~lp~tai~lA~~~~~-g~~V~~iDid~~ai~~Ar~~~~~~g~l~~~i~f~~-~D~~~~~~~--l~~fD  204 (286)
                      .++++||+||++ +|+|++|||.. .+ .+++|+||++|++.+.|++++++.| ++++|+.+. +|+.+....  .+.||
T Consensus        58 ~~~k~iLEiGT~-~GySal~mA~~-l~~~g~l~tiE~~~e~~~~A~~n~~~ag-~~~~i~~~~~gdal~~l~~~~~~~fD  134 (219)
T COG4122          58 SGPKRILEIGTA-IGYSALWMALA-LPDDGRLTTIERDEERAEIARENLAEAG-VDDRIELLLGGDALDVLSRLLDGSFD  134 (219)
T ss_pred             cCCceEEEeecc-cCHHHHHHHhh-CCCCCeEEEEeCCHHHHHHHHHHHHHcC-CcceEEEEecCcHHHHHHhccCCCcc
Confidence            689999999998 79999999994 55 8899999999999999999999999 899999999 599887775  35799


Q ss_pred             eeehhhhccCChhHHHHHHHHHHhhccCCcEEEEeec
Q 042119          205 CIFLAALVGMSKEEKLTILGHIRKYMKDGGILLVRSA  241 (286)
Q Consensus       205 ~V~~aalvg~~~~~k~~vl~~l~~~l~pgg~lv~r~~  241 (286)
                      +||+++-.    .++.++++.+.+.|+|||++++.+.
T Consensus       135 liFIDadK----~~yp~~le~~~~lLr~GGliv~DNv  167 (219)
T COG4122         135 LVFIDADK----ADYPEYLERALPLLRPGGLIVADNV  167 (219)
T ss_pred             EEEEeCCh----hhCHHHHHHHHHHhCCCcEEEEeec
Confidence            99999864    6888999999999999999999984

>PLN02781 Probable caffeoyl-CoA O-methyltransferase

Probab=99.62  E-value=3.7e-15  Score=134.45  Aligned_cols=107  Identities=20%  Similarity=0.303  Sum_probs=93.9

Q ss_pred             CCCCEEEEeccCCChhhHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEccccchhhcC------CC
Q 042119          129 VQPKKVAFVGSGPMPLTSIIMAKHHLTSTHFDNFDIDEAANDVARSIVASDAEFEGRMKFLTRDIMEVKEQL------GE  202 (286)
Q Consensus       129 ~~~~~VL~IG~G~lp~tai~lA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~g~l~~~i~f~~~D~~~~~~~l------~~  202 (286)
                      .++++||+|||| .|++++++|+...++++|+++|+|+++++.|++++++.| ++++|+++.+|+.+....+      +.
T Consensus        67 ~~~~~vLEiGt~-~G~s~l~la~~~~~~g~v~tiD~d~~~~~~A~~n~~~~g-l~~~i~~~~gda~~~L~~l~~~~~~~~  144 (234)
T PLN02781         67 MNAKNTLEIGVF-TGYSLLTTALALPEDGRITAIDIDKEAYEVGLEFIKKAG-VDHKINFIQSDALSALDQLLNNDPKPE  144 (234)
T ss_pred             hCCCEEEEecCc-ccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcC-CCCcEEEEEccHHHHHHHHHhCCCCCC
Confidence            578999999999 599999999854457899999999999999999999999 7899999999998765432      47


Q ss_pred             cceeehhhhccCChhHHHHHHHHHHhhccCCcEEEEeec
Q 042119          203 YDCIFLAALVGMSKEEKLTILGHIRKYMKDGGILLVRSA  241 (286)
Q Consensus       203 fD~V~~aalvg~~~~~k~~vl~~l~~~l~pgg~lv~r~~  241 (286)
                      ||+||+++..    +++..+++.+.+.++|||++++.+.
T Consensus       145 fD~VfiDa~k----~~y~~~~~~~~~ll~~GG~ii~dn~  179 (234)
T PLN02781        145 FDFAFVDADK----PNYVHFHEQLLKLVKVGGIIAFDNT  179 (234)
T ss_pred             CCEEEECCCH----HHHHHHHHHHHHhcCCCeEEEEEcC
Confidence            9999998754    6788899999999999999999773

>PRK00107 gidB 16S rRNA methyltransferase GidB; Reviewed

Probab=99.61  E-value=1.1e-14  Score=127.29  Aligned_cols=103  Identities=17%  Similarity=0.155  Sum_probs=87.7

Q ss_pred             CCCCEEEEeccCCChhhHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEccccchhhcCCCcceeeh
Q 042119          129 VQPKKVAFVGSGPMPLTSIIMAKHHLTSTHFDNFDIDEAANDVARSIVASDAEFEGRMKFLTRDIMEVKEQLGEYDCIFL  208 (286)
Q Consensus       129 ~~~~~VL~IG~G~lp~tai~lA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~g~l~~~i~f~~~D~~~~~~~l~~fD~V~~  208 (286)
                      +++.+|||||||+ |..++.+|+ ..++++|+++|+++++++.|++.++..| +. +++|+++|+.+... .+.||+|+.
T Consensus        44 ~~g~~VLDiGcGt-G~~al~la~-~~~~~~V~giD~s~~~l~~A~~~~~~~~-l~-~i~~~~~d~~~~~~-~~~fDlV~~  118 (187)
T PRK00107         44 PGGERVLDVGSGA-GFPGIPLAI-ARPELKVTLVDSLGKKIAFLREVAAELG-LK-NVTVVHGRAEEFGQ-EEKFDVVTS  118 (187)
T ss_pred             CCCCeEEEEcCCC-CHHHHHHHH-HCCCCeEEEEeCcHHHHHHHHHHHHHcC-CC-CEEEEeccHhhCCC-CCCccEEEE
Confidence            4589999999996 777888887 4689999999999999999999999999 54 59999999988655 457999997


Q ss_pred             hhhccCChhHHHHHHHHHHhhccCCcEEEEeec
Q 042119          209 AALVGMSKEEKLTILGHIRKYMKDGGILLVRSA  241 (286)
Q Consensus       209 aalvg~~~~~k~~vl~~l~~~l~pgg~lv~r~~  241 (286)
                      .+.     .+...+++.+.+.|+|||.+++-..
T Consensus       119 ~~~-----~~~~~~l~~~~~~LkpGG~lv~~~~  146 (187)
T PRK00107        119 RAV-----ASLSDLVELCLPLLKPGGRFLALKG  146 (187)
T ss_pred             ccc-----cCHHHHHHHHHHhcCCCeEEEEEeC
Confidence            653     3556899999999999999988753

>PRK11207 tellurite resistance protein TehB; Provisional

Probab=99.61  E-value=1.2e-14  Score=127.43  Aligned_cols=106  Identities=20%  Similarity=0.312  Sum_probs=86.7

Q ss_pred             CCCCCCEEEEeccCCChhhHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEccccchhhcCCCccee
Q 042119          127 GVVQPKKVAFVGSGPMPLTSIIMAKHHLTSTHFDNFDIDEAANDVARSIVASDAEFEGRMKFLTRDIMEVKEQLGEYDCI  206 (286)
Q Consensus       127 ~~~~~~~VL~IG~G~lp~tai~lA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~g~l~~~i~f~~~D~~~~~~~l~~fD~V  206 (286)
                      ...++.+|||+|||+ |..++.||+   .|.+|+++|+|+++++.|++.++..+ + .++++.++|+.+.+.+ +.||+|
T Consensus        27 ~~~~~~~vLDiGcG~-G~~a~~La~---~g~~V~gvD~S~~~i~~a~~~~~~~~-~-~~v~~~~~d~~~~~~~-~~fD~I   99 (197)
T PRK11207         27 KVVKPGKTLDLGCGN-GRNSLYLAA---NGFDVTAWDKNPMSIANLERIKAAEN-L-DNLHTAVVDLNNLTFD-GEYDFI   99 (197)
T ss_pred             ccCCCCcEEEECCCC-CHHHHHHHH---CCCEEEEEeCCHHHHHHHHHHHHHcC-C-CcceEEecChhhCCcC-CCcCEE
Confidence            345678999999996 778899998   68999999999999999999999888 4 5699999998765443 469999


Q ss_pred             ehhhhc-cCChhHHHHHHHHHHhhccCCcEEEEe
Q 042119          207 FLAALV-GMSKEEKLTILGHIRKYMKDGGILLVR  239 (286)
Q Consensus       207 ~~aalv-g~~~~~k~~vl~~l~~~l~pgg~lv~r  239 (286)
                      +..... ..+.++...+++.+.+.|+|||.+++-
T Consensus       100 ~~~~~~~~~~~~~~~~~l~~i~~~LkpgG~~~~~  133 (197)
T PRK11207        100 LSTVVLMFLEAKTIPGLIANMQRCTKPGGYNLIV  133 (197)
T ss_pred             EEecchhhCCHHHHHHHHHHHHHHcCCCcEEEEE
Confidence            865333 235567889999999999999986543

>PRK15451 tRNA cmo(5)U34 methyltransferase; Provisional

Probab=99.61  E-value=1.3e-14  Score=131.42  Aligned_cols=127  Identities=16%  Similarity=0.204  Sum_probs=97.9

Q ss_pred             CcCccchhhhhHHHHHHHHhcCCCCCCEEEEeccCCChhhHHHHHhh-cCCCcEEEEEeCChHHHHHHHHHHHhcCCCCC
Q 042119          106 FPYYGNYVKLSKLEYTILSENGVVQPKKVAFVGSGPMPLTSIIMAKH-HLTSTHFDNFDIDEAANDVARSIVASDAEFEG  184 (286)
Q Consensus       106 fpy~~ny~~l~~~E~~~l~~~~~~~~~~VL~IG~G~lp~tai~lA~~-~~~g~~V~~iDid~~ai~~Ar~~~~~~g~l~~  184 (286)
                      -|.|++...++..=.    +....++.+|||||||+ |..++.+++. ..++++|+++|+|++|++.|++.++..| ...
T Consensus        36 ~p~y~~~~~~~~~~~----~~~~~~~~~vLDlGcGt-G~~~~~l~~~~~~~~~~v~gvD~S~~ml~~A~~~~~~~~-~~~  109 (247)
T PRK15451         36 VPGYSNIISMIGMLA----ERFVQPGTQVYDLGCSL-GAATLSVRRNIHHDNCKIIAIDNSPAMIERCRRHIDAYK-APT  109 (247)
T ss_pred             CCChHHHHHHHHHHH----HHhCCCCCEEEEEcccC-CHHHHHHHHhcCCCCCeEEEEeCCHHHHHHHHHHHHhcC-CCC
Confidence            377776666644322    12245778999999996 5556666653 2489999999999999999999999888 677


Q ss_pred             CeEEEEccccchhhcCCCcceeehhhhc-cCChhHHHHHHHHHHhhccCCcEEEEee
Q 042119          185 RMKFLTRDIMEVKEQLGEYDCIFLAALV-GMSKEEKLTILGHIRKYMKDGGILLVRS  240 (286)
Q Consensus       185 ~i~f~~~D~~~~~~~l~~fD~V~~aalv-g~~~~~k~~vl~~l~~~l~pgg~lv~r~  240 (286)
                      +++++++|+.+.+.  ..||+|+..... ..+.+++..+++++.+.|+|||.+++.+
T Consensus       110 ~v~~~~~d~~~~~~--~~~D~vv~~~~l~~l~~~~~~~~l~~i~~~LkpGG~l~l~e  164 (247)
T PRK15451        110 PVDVIEGDIRDIAI--ENASMVVLNFTLQFLEPSERQALLDKIYQGLNPGGALVLSE  164 (247)
T ss_pred             CeEEEeCChhhCCC--CCCCEEehhhHHHhCCHHHHHHHHHHHHHhcCCCCEEEEEE
Confidence            99999999977553  469998865332 3455678899999999999999999875

>PLN02476 O-methyltransferase

Probab=99.58  E-value=1.3e-14  Score=133.91  Aligned_cols=107  Identities=14%  Similarity=0.155  Sum_probs=95.3

Q ss_pred             CCCCEEEEeccCCChhhHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEccccchhhcC------CC
Q 042119          129 VQPKKVAFVGSGPMPLTSIIMAKHHLTSTHFDNFDIDEAANDVARSIVASDAEFEGRMKFLTRDIMEVKEQL------GE  202 (286)
Q Consensus       129 ~~~~~VL~IG~G~lp~tai~lA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~g~l~~~i~f~~~D~~~~~~~l------~~  202 (286)
                      .++++||+||+| .|++++++|+...++++|+++|+++++.+.|++++++.| ++++|+++.||+.+....+      +.
T Consensus       117 ~~ak~VLEIGT~-tGySal~lA~al~~~G~V~TiE~d~e~~~~Ar~n~~~aG-l~~~I~li~GdA~e~L~~l~~~~~~~~  194 (278)
T PLN02476        117 LGAERCIEVGVY-TGYSSLAVALVLPESGCLVACERDSNSLEVAKRYYELAG-VSHKVNVKHGLAAESLKSMIQNGEGSS  194 (278)
T ss_pred             cCCCeEEEecCC-CCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcC-CCCcEEEEEcCHHHHHHHHHhcccCCC
Confidence            678999999999 699999999854457899999999999999999999999 7899999999998876543      46


Q ss_pred             cceeehhhhccCChhHHHHHHHHHHhhccCCcEEEEeec
Q 042119          203 YDCIFLAALVGMSKEEKLTILGHIRKYMKDGGILLVRSA  241 (286)
Q Consensus       203 fD~V~~aalvg~~~~~k~~vl~~l~~~l~pgg~lv~r~~  241 (286)
                      ||+||+++-.    .++.++++.+.+.|+|||++++.+.
T Consensus       195 FD~VFIDa~K----~~Y~~y~e~~l~lL~~GGvIV~DNv  229 (278)
T PLN02476        195 YDFAFVDADK----RMYQDYFELLLQLVRVGGVIVMDNV  229 (278)
T ss_pred             CCEEEECCCH----HHHHHHHHHHHHhcCCCcEEEEecC
Confidence            9999999753    7889999999999999999999874

>PLN02589 caffeoyl-CoA O-methyltransferase

Probab=99.58  E-value=1.2e-14  Score=132.24  Aligned_cols=107  Identities=15%  Similarity=0.256  Sum_probs=96.2

Q ss_pred             CCCCEEEEeccCCChhhHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEccccchhhcC-------C
Q 042119          129 VQPKKVAFVGSGPMPLTSIIMAKHHLTSTHFDNFDIDEAANDVARSIVASDAEFEGRMKFLTRDIMEVKEQL-------G  201 (286)
Q Consensus       129 ~~~~~VL~IG~G~lp~tai~lA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~g~l~~~i~f~~~D~~~~~~~l-------~  201 (286)
                      ..+++||+||++ .|+|+++||+...++++|+++|++++..+.|++.+++.| +.++|++++||+.+....+       +
T Consensus        78 ~~ak~iLEiGT~-~GySal~la~al~~~g~v~tiE~~~~~~~~Ar~~~~~ag-~~~~I~~~~G~a~e~L~~l~~~~~~~~  155 (247)
T PLN02589         78 INAKNTMEIGVY-TGYSLLATALALPEDGKILAMDINRENYELGLPVIQKAG-VAHKIDFREGPALPVLDQMIEDGKYHG  155 (247)
T ss_pred             hCCCEEEEEeCh-hhHHHHHHHhhCCCCCEEEEEeCCHHHHHHHHHHHHHCC-CCCceEEEeccHHHHHHHHHhccccCC
Confidence            578999999998 799999999855568999999999999999999999999 7999999999998876543       4


Q ss_pred             CcceeehhhhccCChhHHHHHHHHHHhhccCCcEEEEeec
Q 042119          202 EYDCIFLAALVGMSKEEKLTILGHIRKYMKDGGILLVRSA  241 (286)
Q Consensus       202 ~fD~V~~aalvg~~~~~k~~vl~~l~~~l~pgg~lv~r~~  241 (286)
                      .||+||+++-.    ..+...++.+.+.|+|||+|++.+.
T Consensus       156 ~fD~iFiDadK----~~Y~~y~~~~l~ll~~GGviv~DNv  191 (247)
T PLN02589        156 TFDFIFVDADK----DNYINYHKRLIDLVKVGGVIGYDNT  191 (247)
T ss_pred             cccEEEecCCH----HHhHHHHHHHHHhcCCCeEEEEcCC
Confidence            79999999864    7888999999999999999999874

>TIGR00138 gidB 16S rRNA methyltransferase GidB

Probab=99.56  E-value=3.6e-14  Score=123.28  Aligned_cols=102  Identities=18%  Similarity=0.228  Sum_probs=85.2

Q ss_pred             CCCEEEEeccCCChhhHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEccccchhhcCCCcceeehh
Q 042119          130 QPKKVAFVGSGPMPLTSIIMAKHHLTSTHFDNFDIDEAANDVARSIVASDAEFEGRMKFLTRDIMEVKEQLGEYDCIFLA  209 (286)
Q Consensus       130 ~~~~VL~IG~G~lp~tai~lA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~g~l~~~i~f~~~D~~~~~~~l~~fD~V~~a  209 (286)
                      ++++|||||||+ |..++.+|+ ..++++|+++|+|+++++.+++.+++.| + ++++++++|+.++. ..+.||+|+..
T Consensus        42 ~~~~vLDiGcGt-G~~s~~la~-~~~~~~V~~iD~s~~~~~~a~~~~~~~~-~-~~i~~i~~d~~~~~-~~~~fD~I~s~  116 (181)
T TIGR00138        42 DGKKVIDIGSGA-GFPGIPLAI-ARPELKLTLLESNHKKVAFLREVKAELG-L-NNVEIVNGRAEDFQ-HEEQFDVITSR  116 (181)
T ss_pred             CCCeEEEecCCC-CccHHHHHH-HCCCCeEEEEeCcHHHHHHHHHHHHHhC-C-CCeEEEecchhhcc-ccCCccEEEeh
Confidence            478999999996 677888886 4678999999999999999999999998 4 46999999998753 23579999876


Q ss_pred             hhccCChhHHHHHHHHHHhhccCCcEEEEeec
Q 042119          210 ALVGMSKEEKLTILGHIRKYMKDGGILLVRSA  241 (286)
Q Consensus       210 alvg~~~~~k~~vl~~l~~~l~pgg~lv~r~~  241 (286)
                      + +    .+...+++.+.+.|+|||++++...
T Consensus       117 ~-~----~~~~~~~~~~~~~LkpgG~lvi~~~  143 (181)
T TIGR00138       117 A-L----ASLNVLLELTLNLLKVGGYFLAYKG  143 (181)
T ss_pred             h-h----hCHHHHHHHHHHhcCCCCEEEEEcC
Confidence            5 2    3445688999999999999998753

GidB (glucose-inhibited division protein B) appears to be present and in a single copy in nearly all complete eubacterial genomes. It is missing only from some obligate intracellular species of various lineages (Chlamydiae, Ehrlichia, Wolbachia, Anaplasma, Buchnera, etc.). GidB shows a methytransferase fold in its the crystal structure, and acts as a 7-methylguanosine (m(7)G) methyltransferase, apparently specific to 16S rRNA.

>PF08241 Methyltransf_11: Methyltransferase domain; InterPro: IPR013216 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals

Probab=99.56  E-value=1.6e-14  Score=109.41  Aligned_cols=95  Identities=21%  Similarity=0.316  Sum_probs=77.7

Q ss_pred             EEeccCCChhhHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEccccchhhcCCCcceeehhhhccC
Q 042119          135 AFVGSGPMPLTSIIMAKHHLTSTHFDNFDIDEAANDVARSIVASDAEFEGRMKFLTRDIMEVKEQLGEYDCIFLAALVGM  214 (286)
Q Consensus       135 L~IG~G~lp~tai~lA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~g~l~~~i~f~~~D~~~~~~~l~~fD~V~~aalvg~  214 (286)
                      ||||||+ |.++..++++  ++.+|+++|+++++++.+++.....     ++++.++|+.+++.+.+.||+|+......+
T Consensus         1 LdiG~G~-G~~~~~l~~~--~~~~v~~~D~~~~~~~~~~~~~~~~-----~~~~~~~d~~~l~~~~~sfD~v~~~~~~~~   72 (95)
T PF08241_consen    1 LDIGCGT-GRFAAALAKR--GGASVTGIDISEEMLEQARKRLKNE-----GVSFRQGDAEDLPFPDNSFDVVFSNSVLHH   72 (95)
T ss_dssp             EEET-TT-SHHHHHHHHT--TTCEEEEEES-HHHHHHHHHHTTTS-----TEEEEESBTTSSSS-TT-EEEEEEESHGGG
T ss_pred             CEecCcC-CHHHHHHHhc--cCCEEEEEeCCHHHHHHHHhccccc-----CchheeehHHhCccccccccccccccceee
Confidence            7999995 8888888883  7999999999999999999986544     456999999999888789999997665533


Q ss_pred             ChhHHHHHHHHHHhhccCCcEEEE
Q 042119          215 SKEEKLTILGHIRKYMKDGGILLV  238 (286)
Q Consensus       215 ~~~~k~~vl~~l~~~l~pgg~lv~  238 (286)
                      - ++..++++++.|.|||||++++
T Consensus        73 ~-~~~~~~l~e~~rvLk~gG~l~~   95 (95)
T PF08241_consen   73 L-EDPEAALREIYRVLKPGGRLVI   95 (95)
T ss_dssp             S-SHHHHHHHHHHHHEEEEEEEEE
T ss_pred             c-cCHHHHHHHHHHHcCcCeEEeC
Confidence            3 7888999999999999999975

The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Arsenite methyltransferase (2.1.1.137 from EC) which converts arsenical compounds to their methylated forms [] Biotin synthesis protein bioC, which is involved in the early stages of biotin biosyntheis [] Arginine N-methyltransferase 1, an arginine-methylating enzyme which acts on residues present in a glycine and argine-rich domain and can methylate histones [] Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Sterol 24-C-methyltransferase (2.1.1.41 from EC), shown to participate in ergosterol biosynthesis [] 3-demethylubiquinone-9 3-methyltransferase (2.1.1.64 from EC) involved in ubiquinone biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ]. ; GO: 0008168 methyltransferase activity, 0008152 metabolic process; PDB: 3CGG_B 3CCF_B 3BKW_B 2PXX_A 3I9F_A 2YQZ_B 2YR0_A 3BUS_A 3EGE_A 3G5L_B ....

>PRK11036 putative S-adenosyl-L-methionine-dependent methyltransferase; Provisional

Probab=99.55  E-value=5.9e-14  Score=127.47  Aligned_cols=105  Identities=17%  Similarity=0.260  Sum_probs=88.0

Q ss_pred             CCCCEEEEeccCCChhhHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEccccchhh-cCCCcceee
Q 042119          129 VQPKKVAFVGSGPMPLTSIIMAKHHLTSTHFDNFDIDEAANDVARSIVASDAEFEGRMKFLTRDIMEVKE-QLGEYDCIF  207 (286)
Q Consensus       129 ~~~~~VL~IG~G~lp~tai~lA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~g~l~~~i~f~~~D~~~~~~-~l~~fD~V~  207 (286)
                      .++.+|||||||+ |..+..+|+   .|.+|+++|+|+++++.|++.+...| +.++++|+++|+.++.. ..+.||+|+
T Consensus        43 ~~~~~vLDiGcG~-G~~a~~la~---~g~~v~~vD~s~~~l~~a~~~~~~~g-~~~~v~~~~~d~~~l~~~~~~~fD~V~  117 (255)
T PRK11036         43 PRPLRVLDAGGGE-GQTAIKLAE---LGHQVILCDLSAEMIQRAKQAAEAKG-VSDNMQFIHCAAQDIAQHLETPVDLIL  117 (255)
T ss_pred             CCCCEEEEeCCCc-hHHHHHHHH---cCCEEEEEECCHHHHHHHHHHHHhcC-CccceEEEEcCHHHHhhhcCCCCCEEE
Confidence            5678999999996 677888888   58999999999999999999999998 67899999999987653 235799999


Q ss_pred             hhhhccCChhHHHHHHHHHHhhccCCcEEEEe
Q 042119          208 LAALVGMSKEEKLTILGHIRKYMKDGGILLVR  239 (286)
Q Consensus       208 ~aalvg~~~~~k~~vl~~l~~~l~pgg~lv~r  239 (286)
                      ......+ .+++..+++++.+.|||||.+++.
T Consensus       118 ~~~vl~~-~~~~~~~l~~~~~~LkpgG~l~i~  148 (255)
T PRK11036        118 FHAVLEW-VADPKSVLQTLWSVLRPGGALSLM  148 (255)
T ss_pred             ehhHHHh-hCCHHHHHHHHHHHcCCCeEEEEE
Confidence            7654422 245668999999999999999875

>TIGR00740 methyltransferase, putative

Probab=99.55  E-value=8.3e-14  Score=125.15  Aligned_cols=126  Identities=17%  Similarity=0.235  Sum_probs=95.3

Q ss_pred             cCccchhhhhHHHHHHHHhcCCCCCCEEEEeccCCChhhHHHHHhhc-CCCcEEEEEeCChHHHHHHHHHHHhcCCCCCC
Q 042119          107 PYYGNYVKLSKLEYTILSENGVVQPKKVAFVGSGPMPLTSIIMAKHH-LTSTHFDNFDIDEAANDVARSIVASDAEFEGR  185 (286)
Q Consensus       107 py~~ny~~l~~~E~~~l~~~~~~~~~~VL~IG~G~lp~tai~lA~~~-~~g~~V~~iDid~~ai~~Ar~~~~~~g~l~~~  185 (286)
                      |+|.+....+..    +......++.+|||||||+ |..+..++++. .++++|+|+|+|+++++.|++.++..+ ...+
T Consensus        34 p~y~~~~~~~~~----l~~~~~~~~~~iLDlGcG~-G~~~~~l~~~~~~p~~~v~gvD~s~~ml~~a~~~~~~~~-~~~~  107 (239)
T TIGR00740        34 PGYSNIITAIGM----LAERFVTPDSNVYDLGCSR-GAATLSARRNINQPNVKIIGIDNSQPMVERCRQHIAAYH-SEIP  107 (239)
T ss_pred             CCHHHHHHHHHH----HHHHhCCCCCEEEEecCCC-CHHHHHHHHhcCCCCCeEEEEeCCHHHHHHHHHHHHhcC-CCCC
Confidence            555554444321    2222335778999999997 56667777632 378999999999999999999998877 5678


Q ss_pred             eEEEEccccchhhcCCCcceeehhhhc-cCChhHHHHHHHHHHhhccCCcEEEEee
Q 042119          186 MKFLTRDIMEVKEQLGEYDCIFLAALV-GMSKEEKLTILGHIRKYMKDGGILLVRS  240 (286)
Q Consensus       186 i~f~~~D~~~~~~~l~~fD~V~~aalv-g~~~~~k~~vl~~l~~~l~pgg~lv~r~  240 (286)
                      ++|+++|+.+.+.  ..+|+|+....+ ..+.+++.++++++.+.|+|||.+++.+
T Consensus       108 v~~~~~d~~~~~~--~~~d~v~~~~~l~~~~~~~~~~~l~~i~~~LkpgG~l~i~d  161 (239)
T TIGR00740       108 VEILCNDIRHVEI--KNASMVILNFTLQFLPPEDRIALLTKIYEGLNPNGVLVLSE  161 (239)
T ss_pred             eEEEECChhhCCC--CCCCEEeeecchhhCCHHHHHHHHHHHHHhcCCCeEEEEee
Confidence            9999999977553  468987754333 3355678899999999999999999975

A simple BLAST search finds all members of this family and weaker hits to a large number of known and predicted methyltransferases. A single iteration with PSI-BLAST, keeping only clear members of the family, leads to a large number of highly significant hits to a set of known and predicted methyltransferases with a large repertoire of different specifities. This model is restricted to a subfamily found so far only in the Proteobacteria, sharing consistent length, full-length homology, and on average better than 35 % identity. It is reasonable to predict equivalent function within this subfamily.

>PLN02233 ubiquinone biosynthesis methyltransferase

Probab=99.55  E-value=6.6e-14  Score=128.10  Aligned_cols=111  Identities=12%  Similarity=0.139  Sum_probs=87.8

Q ss_pred             CCCCCCEEEEeccCCChhhHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHh--cCCCCCCeEEEEccccchhhcCCCcc
Q 042119          127 GVVQPKKVAFVGSGPMPLTSIIMAKHHLTSTHFDNFDIDEAANDVARSIVAS--DAEFEGRMKFLTRDIMEVKEQLGEYD  204 (286)
Q Consensus       127 ~~~~~~~VL~IG~G~lp~tai~lA~~~~~g~~V~~iDid~~ai~~Ar~~~~~--~g~l~~~i~f~~~D~~~~~~~l~~fD  204 (286)
                      .+.++.+|||||||+ |..+..++++..+.++|+|+|+|++|++.|++....  .+ ..++++|+++|+.+++.+.+.||
T Consensus        70 ~~~~~~~VLDlGcGt-G~~~~~la~~~~~~~~V~gvD~S~~ml~~A~~r~~~~~~~-~~~~i~~~~~d~~~lp~~~~sfD  147 (261)
T PLN02233         70 GAKMGDRVLDLCCGS-GDLAFLLSEKVGSDGKVMGLDFSSEQLAVAASRQELKAKS-CYKNIEWIEGDATDLPFDDCYFD  147 (261)
T ss_pred             CCCCCCEEEEECCcC-CHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHhhhhhhc-cCCCeEEEEcccccCCCCCCCEe
Confidence            456789999999997 556677877333567999999999999999987542  22 23689999999998877666899


Q ss_pred             eeehhhhccCChhHHHHHHHHHHhhccCCcEEEEee
Q 042119          205 CIFLAALVGMSKEEKLTILGHIRKYMKDGGILLVRS  240 (286)
Q Consensus       205 ~V~~aalvg~~~~~k~~vl~~l~~~l~pgg~lv~r~  240 (286)
                      +|+....+. ..+++.++++++.++|||||.+++.+
T Consensus       148 ~V~~~~~l~-~~~d~~~~l~ei~rvLkpGG~l~i~d  182 (261)
T PLN02233        148 AITMGYGLR-NVVDRLKAMQEMYRVLKPGSRVSILD  182 (261)
T ss_pred             EEEEecccc-cCCCHHHHHHHHHHHcCcCcEEEEEE
Confidence            998654332 23578899999999999999998865

>PTZ00098 phosphoethanolamine N-methyltransferase; Provisional

Probab=99.54  E-value=6.3e-14  Score=128.34  Aligned_cols=112  Identities=24%  Similarity=0.360  Sum_probs=90.4

Q ss_pred             HHHhcCCCCCCEEEEeccCCChhhHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEccccchhhcCC
Q 042119          122 ILSENGVVQPKKVAFVGSGPMPLTSIIMAKHHLTSTHFDNFDIDEAANDVARSIVASDAEFEGRMKFLTRDIMEVKEQLG  201 (286)
Q Consensus       122 ~l~~~~~~~~~~VL~IG~G~lp~tai~lA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~g~l~~~i~f~~~D~~~~~~~l~  201 (286)
                      ++....+.++.+|||||||+ |..+..+|+.  .+++|+++|+|+++++.|++....    .++++|+++|+.+.+.+.+
T Consensus        44 ~l~~l~l~~~~~VLDiGcG~-G~~a~~la~~--~~~~v~giD~s~~~~~~a~~~~~~----~~~i~~~~~D~~~~~~~~~  116 (263)
T PTZ00098         44 ILSDIELNENSKVLDIGSGL-GGGCKYINEK--YGAHVHGVDICEKMVNIAKLRNSD----KNKIEFEANDILKKDFPEN  116 (263)
T ss_pred             HHHhCCCCCCCEEEEEcCCC-ChhhHHHHhh--cCCEEEEEECCHHHHHHHHHHcCc----CCceEEEECCcccCCCCCC
Confidence            34455678889999999996 5566777763  588999999999999999997543    2589999999987665556


Q ss_pred             Ccceeehh-hhccCChhHHHHHHHHHHhhccCCcEEEEee
Q 042119          202 EYDCIFLA-ALVGMSKEEKLTILGHIRKYMKDGGILLVRS  240 (286)
Q Consensus       202 ~fD~V~~a-alvg~~~~~k~~vl~~l~~~l~pgg~lv~r~  240 (286)
                      .||+|+.. ++.+++.+++.++++++++.|||||.+++.+
T Consensus       117 ~FD~V~s~~~l~h~~~~d~~~~l~~i~r~LkPGG~lvi~d  156 (263)
T PTZ00098        117 TFDMIYSRDAILHLSYADKKKLFEKCYKWLKPNGILLITD  156 (263)
T ss_pred             CeEEEEEhhhHHhCCHHHHHHHHHHHHHHcCCCcEEEEEE
Confidence            89999963 3445555688999999999999999999875

>TIGR02752 MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone methyltransferase

Probab=99.54  E-value=1.3e-13  Score=122.75  Aligned_cols=112  Identities=17%  Similarity=0.196  Sum_probs=91.0

Q ss_pred             hcCCCCCCEEEEeccCCChhhHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEccccchhhcCCCcc
Q 042119          125 ENGVVQPKKVAFVGSGPMPLTSIIMAKHHLTSTHFDNFDIDEAANDVARSIVASDAEFEGRMKFLTRDIMEVKEQLGEYD  204 (286)
Q Consensus       125 ~~~~~~~~~VL~IG~G~lp~tai~lA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~g~l~~~i~f~~~D~~~~~~~l~~fD  204 (286)
                      ...+.++++|||||||+ |..+..+++...++++|+|+|+++++++.|++.+...+ + ++++++++|+.+.+.+.+.||
T Consensus        40 ~l~~~~~~~vLDiGcG~-G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~-~-~~v~~~~~d~~~~~~~~~~fD  116 (231)
T TIGR02752        40 RMNVQAGTSALDVCCGT-ADWSIALAEAVGPEGHVIGLDFSENMLSVGRQKVKDAG-L-HNVELVHGNAMELPFDDNSFD  116 (231)
T ss_pred             hcCCCCCCEEEEeCCCc-CHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHhcC-C-CceEEEEechhcCCCCCCCcc
Confidence            34557789999999996 66667788743467899999999999999999998887 4 689999999987665556899


Q ss_pred             eeehhhhccCChhHHHHHHHHHHhhccCCcEEEEee
Q 042119          205 CIFLAALVGMSKEEKLTILGHIRKYMKDGGILLVRS  240 (286)
Q Consensus       205 ~V~~aalvg~~~~~k~~vl~~l~~~l~pgg~lv~r~  240 (286)
                      +|+....+. ..++..++++++.+.|+|||.+++.+
T Consensus       117 ~V~~~~~l~-~~~~~~~~l~~~~~~Lk~gG~l~~~~  151 (231)
T TIGR02752       117 YVTIGFGLR-NVPDYMQVLREMYRVVKPGGKVVCLE  151 (231)
T ss_pred             EEEEecccc-cCCCHHHHHHHHHHHcCcCeEEEEEE
Confidence            998664432 23566789999999999999998865

MenG is a generic term for a methyltransferase that catalyzes the last step in menaquinone biosynthesis; the exact enzymatic activity differs for different MenG because the menaquinone differ in their prenoid side chains in different species. Members of this MenG protein family are 2-heptaprenyl-1,4-naphthoquinone methyltransferase, and are found together in operons with the two subunits of the heptaprenyl diphosphate synthase in Bacillus subtilis and related species.

>TIGR02469 CbiT precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT subunit

Probab=99.54  E-value=1.4e-13  Score=109.78  Aligned_cols=107  Identities=15%  Similarity=0.156  Sum_probs=85.5

Q ss_pred             cCCCCCCEEEEeccCCChhhHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEccccchh-hcCCCcc
Q 042119          126 NGVVQPKKVAFVGSGPMPLTSIIMAKHHLTSTHFDNFDIDEAANDVARSIVASDAEFEGRMKFLTRDIMEVK-EQLGEYD  204 (286)
Q Consensus       126 ~~~~~~~~VL~IG~G~lp~tai~lA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~g~l~~~i~f~~~D~~~~~-~~l~~fD  204 (286)
                      ..+.++++|+|+|||+ |..+..+++ ..++.+|+++|+++.+++.|++.++..+ + .+++++++|+.+.. .....||
T Consensus        15 ~~~~~~~~vldlG~G~-G~~~~~l~~-~~~~~~v~~vD~s~~~~~~a~~~~~~~~-~-~~~~~~~~~~~~~~~~~~~~~D   90 (124)
T TIGR02469        15 LRLRPGDVLWDIGAGS-GSITIEAAR-LVPNGRVYAIERNPEALRLIERNARRFG-V-SNIVIVEGDAPEALEDSLPEPD   90 (124)
T ss_pred             cCCCCCCEEEEeCCCC-CHHHHHHHH-HCCCceEEEEcCCHHHHHHHHHHHHHhC-C-CceEEEeccccccChhhcCCCC
Confidence            3456678999999997 566677777 4677999999999999999999999888 3 57999999986532 2235799


Q ss_pred             eeehhhhccCChhHHHHHHHHHHhhccCCcEEEEee
Q 042119          205 CIFLAALVGMSKEEKLTILGHIRKYMKDGGILLVRS  240 (286)
Q Consensus       205 ~V~~aalvg~~~~~k~~vl~~l~~~l~pgg~lv~r~  240 (286)
                      +|+.....    ....++++++.+.|+|||.+++..
T Consensus        91 ~v~~~~~~----~~~~~~l~~~~~~Lk~gG~li~~~  122 (124)
T TIGR02469        91 RVFIGGSG----GLLQEILEAIWRRLRPGGRIVLNA  122 (124)
T ss_pred             EEEECCcc----hhHHHHHHHHHHHcCCCCEEEEEe
Confidence            99975432    345689999999999999998753

This model recognizes the CbiT methylase which is responsible, in part (along with CbiE), for methylating precorrin-6y (or cobalt-precorrin-6y) at both the 5 and 15 positions as well as the concomitant decarbozylation at C-12. In many organisms, this protein is fused to the CbiE subunit. The fused protein, when found in organisms catalyzing the oxidative version of the cobalamin biosynthesis pathway, is called CobL.

>PRK12335 tellurite resistance protein TehB; Provisional

Probab=99.54  E-value=1.3e-13  Score=127.62  Aligned_cols=103  Identities=20%  Similarity=0.299  Sum_probs=84.3

Q ss_pred             CCCCEEEEeccCCChhhHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEccccchhhcCCCcceeeh
Q 042119          129 VQPKKVAFVGSGPMPLTSIIMAKHHLTSTHFDNFDIDEAANDVARSIVASDAEFEGRMKFLTRDIMEVKEQLGEYDCIFL  208 (286)
Q Consensus       129 ~~~~~VL~IG~G~lp~tai~lA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~g~l~~~i~f~~~D~~~~~~~l~~fD~V~~  208 (286)
                      .++.+|||||||. |..++.+|+   .|.+|+++|+|+++++.+++.++..+ +  ++++.++|+.+... .+.||+|+.
T Consensus       119 ~~~~~vLDlGcG~-G~~~~~la~---~g~~V~avD~s~~ai~~~~~~~~~~~-l--~v~~~~~D~~~~~~-~~~fD~I~~  190 (287)
T PRK12335        119 VKPGKALDLGCGQ-GRNSLYLAL---LGFDVTAVDINQQSLENLQEIAEKEN-L--NIRTGLYDINSASI-QEEYDFILS  190 (287)
T ss_pred             cCCCCEEEeCCCC-CHHHHHHHH---CCCEEEEEECCHHHHHHHHHHHHHcC-C--ceEEEEechhcccc-cCCccEEEE
Confidence            3567999999995 788899998   68999999999999999999999888 4  69999999865433 347999986


Q ss_pred             hhhc-cCChhHHHHHHHHHHhhccCCcEEEEe
Q 042119          209 AALV-GMSKEEKLTILGHIRKYMKDGGILLVR  239 (286)
Q Consensus       209 aalv-g~~~~~k~~vl~~l~~~l~pgg~lv~r  239 (286)
                      .... ..+.+....+++++.+.|+|||++++-
T Consensus       191 ~~vl~~l~~~~~~~~l~~~~~~LkpgG~~l~v  222 (287)
T PRK12335        191 TVVLMFLNRERIPAIIKNMQEHTNPGGYNLIV  222 (287)
T ss_pred             cchhhhCCHHHHHHHHHHHHHhcCCCcEEEEE
Confidence            5332 335567889999999999999996653

>PRK11873 arsM arsenite S-adenosylmethyltransferase; Reviewed

Probab=99.52  E-value=1.2e-13  Score=126.25  Aligned_cols=110  Identities=15%  Similarity=0.210  Sum_probs=90.3

Q ss_pred             CCCCCCEEEEeccCCChhhHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEccccchhhcCCCccee
Q 042119          127 GVVQPKKVAFVGSGPMPLTSIIMAKHHLTSTHFDNFDIDEAANDVARSIVASDAEFEGRMKFLTRDIMEVKEQLGEYDCI  206 (286)
Q Consensus       127 ~~~~~~~VL~IG~G~lp~tai~lA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~g~l~~~i~f~~~D~~~~~~~l~~fD~V  206 (286)
                      .+.++++||+||||+ |..++.+++...+..+|+++|+++++++.|++..+..| + ++++|+.+|+.+++...+.||+|
T Consensus        74 ~~~~g~~VLDiG~G~-G~~~~~~a~~~g~~~~v~gvD~s~~~l~~A~~~~~~~g-~-~~v~~~~~d~~~l~~~~~~fD~V  150 (272)
T PRK11873         74 ELKPGETVLDLGSGG-GFDCFLAARRVGPTGKVIGVDMTPEMLAKARANARKAG-Y-TNVEFRLGEIEALPVADNSVDVI  150 (272)
T ss_pred             cCCCCCEEEEeCCCC-CHHHHHHHHHhCCCCEEEEECCCHHHHHHHHHHHHHcC-C-CCEEEEEcchhhCCCCCCceeEE
Confidence            346889999999997 77777777643456789999999999999999999988 4 58999999998776555579999


Q ss_pred             ehhhhccCChhHHHHHHHHHHhhccCCcEEEEee
Q 042119          207 FLAALVGMSKEEKLTILGHIRKYMKDGGILLVRS  240 (286)
Q Consensus       207 ~~aalvg~~~~~k~~vl~~l~~~l~pgg~lv~r~  240 (286)
                      +......+ .+++.++++++.+.|||||++++.+
T Consensus       151 i~~~v~~~-~~d~~~~l~~~~r~LkpGG~l~i~~  183 (272)
T PRK11873        151 ISNCVINL-SPDKERVFKEAFRVLKPGGRFAISD  183 (272)
T ss_pred             EEcCcccC-CCCHHHHHHHHHHHcCCCcEEEEEE
Confidence            86544332 3577789999999999999999865

>PF02353 CMAS: Mycolic acid cyclopropane synthetase; InterPro: IPR003333 This entry represents mycolic acid cyclopropane synthases and related enzymes, including CmaA1, CmaA2 (cyclopropane mycolic acid synthase A1 and A2) and MmaA1-4 (methoxymycolic acid synthase A1-4)

Probab=99.52  E-value=1.1e-13  Score=127.69  Aligned_cols=112  Identities=18%  Similarity=0.328  Sum_probs=84.9

Q ss_pred             HHHhcCCCCCCEEEEeccCCChhhHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEccccchhhcCC
Q 042119          122 ILSENGVVQPKKVAFVGSGPMPLTSIIMAKHHLTSTHFDNFDIDEAANDVARSIVASDAEFEGRMKFLTRDIMEVKEQLG  201 (286)
Q Consensus       122 ~l~~~~~~~~~~VL~IG~G~lp~tai~lA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~g~l~~~i~f~~~D~~~~~~~l~  201 (286)
                      .+.+.++++|.+||||||| -|-.++.+|++  .|++|+||++|++..+.|++.++..| +.+++++..+|..+++.   
T Consensus        54 ~~~~~~l~~G~~vLDiGcG-wG~~~~~~a~~--~g~~v~gitlS~~Q~~~a~~~~~~~g-l~~~v~v~~~D~~~~~~---  126 (273)
T PF02353_consen   54 LCEKLGLKPGDRVLDIGCG-WGGLAIYAAER--YGCHVTGITLSEEQAEYARERIREAG-LEDRVEVRLQDYRDLPG---  126 (273)
T ss_dssp             HHTTTT--TT-EEEEES-T-TSHHHHHHHHH--H--EEEEEES-HHHHHHHHHHHHCST-SSSTEEEEES-GGG------
T ss_pred             HHHHhCCCCCCEEEEeCCC-ccHHHHHHHHH--cCcEEEEEECCHHHHHHHHHHHHhcC-CCCceEEEEeeccccCC---
Confidence            4556678999999999999 57778889984  49999999999999999999999999 89999999999877554   


Q ss_pred             Ccceeehhhhc-cCChhHHHHHHHHHHhhccCCcEEEEee
Q 042119          202 EYDCIFLAALV-GMSKEEKLTILGHIRKYMKDGGILLVRS  240 (286)
Q Consensus       202 ~fD~V~~aalv-g~~~~~k~~vl~~l~~~l~pgg~lv~r~  240 (286)
                      .||.|+.--.+ ++..++...+++.+.+.|+|||++++..
T Consensus       127 ~fD~IvSi~~~Ehvg~~~~~~~f~~~~~~LkpgG~~~lq~  166 (273)
T PF02353_consen  127 KFDRIVSIEMFEHVGRKNYPAFFRKISRLLKPGGRLVLQT  166 (273)
T ss_dssp             S-SEEEEESEGGGTCGGGHHHHHHHHHHHSETTEEEEEEE
T ss_pred             CCCEEEEEechhhcChhHHHHHHHHHHHhcCCCcEEEEEe
Confidence            89988743222 4455788899999999999999998853

All are thought to be S-adenosyl-L-methionine (SAM) utilising methyltransferases []. Mycolic acid cyclopropane synthase or cyclopropane-fatty-acyl-phospholipid synthase (CFA synthase) 2.1.1.79 from EC catalyses the reaction: S-adenosyl-L-methionine + phospholipid olefinic fatty acid -> S-adenosyl-L-homocysteine + phospholipid cyclopropane fatty acid. The major mycolic acid produced by Mycobacterium tuberculosis contains two cis-cyclopropanes in the meromycolate chain. Cyclopropanation may contribute to the structural integrity of the cell wall complex [].; GO: 0008610 lipid biosynthetic process; PDB: 3HA5_A 2FK8_A 3HA7_A 3HA3_A 2FK7_A 1KPG_D 1KP9_B 1KPH_D 3VC2_E 3VC1_D ....

>TIGR00477 tehB tellurite resistance protein TehB

Probab=99.52  E-value=1.2e-13  Score=120.93  Aligned_cols=105  Identities=18%  Similarity=0.253  Sum_probs=83.7

Q ss_pred             CCCCCCEEEEeccCCChhhHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEccccchhhcCCCccee
Q 042119          127 GVVQPKKVAFVGSGPMPLTSIIMAKHHLTSTHFDNFDIDEAANDVARSIVASDAEFEGRMKFLTRDIMEVKEQLGEYDCI  206 (286)
Q Consensus       127 ~~~~~~~VL~IG~G~lp~tai~lA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~g~l~~~i~f~~~D~~~~~~~l~~fD~V  206 (286)
                      ...++.+|||||||. |..++.+|+   .|.+|+++|+|+++++.+++.++..| +  ++++.++|+.+.+.+ +.||+|
T Consensus        27 ~~~~~~~vLDiGcG~-G~~a~~la~---~g~~V~~iD~s~~~l~~a~~~~~~~~-~--~v~~~~~d~~~~~~~-~~fD~I   98 (195)
T TIGR00477        27 KTVAPCKTLDLGCGQ-GRNSLYLSL---AGYDVRAWDHNPASIASVLDMKAREN-L--PLRTDAYDINAAALN-EDYDFI   98 (195)
T ss_pred             ccCCCCcEEEeCCCC-CHHHHHHHH---CCCeEEEEECCHHHHHHHHHHHHHhC-C--CceeEeccchhcccc-CCCCEE
Confidence            345678999999995 788899998   68999999999999999999998888 4  388888887543332 479999


Q ss_pred             ehhhhc-cCChhHHHHHHHHHHhhccCCcEEEEe
Q 042119          207 FLAALV-GMSKEEKLTILGHIRKYMKDGGILLVR  239 (286)
Q Consensus       207 ~~aalv-g~~~~~k~~vl~~l~~~l~pgg~lv~r  239 (286)
                      +..... ..+.++...+++.+.+.|+|||++++-
T Consensus        99 ~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lli~  132 (195)
T TIGR00477        99 FSTVVFMFLQAGRVPEIIANMQAHTRPGGYNLIV  132 (195)
T ss_pred             EEecccccCCHHHHHHHHHHHHHHhCCCcEEEEE
Confidence            854332 335567789999999999999985543

Part of a tellurite-reducing operon tehA and tehB

>PLN02396 hexaprenyldihydroxybenzoate methyltransferase

Probab=99.52  E-value=1.1e-13  Score=130.53  Aligned_cols=107  Identities=12%  Similarity=0.188  Sum_probs=88.7

Q ss_pred             CCCCEEEEeccCCChhhHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEccccchhhcCCCcceeeh
Q 042119          129 VQPKKVAFVGSGPMPLTSIIMAKHHLTSTHFDNFDIDEAANDVARSIVASDAEFEGRMKFLTRDIMEVKEQLGEYDCIFL  208 (286)
Q Consensus       129 ~~~~~VL~IG~G~lp~tai~lA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~g~l~~~i~f~~~D~~~~~~~l~~fD~V~~  208 (286)
                      .++.+|||||||+ |..+..+|+   .|++|+|||+++++++.|++..+..+ ...+++|+++|+.+++...+.||+|+.
T Consensus       130 ~~g~~ILDIGCG~-G~~s~~La~---~g~~V~GID~s~~~i~~Ar~~~~~~~-~~~~i~~~~~dae~l~~~~~~FD~Vi~  204 (322)
T PLN02396        130 FEGLKFIDIGCGG-GLLSEPLAR---MGATVTGVDAVDKNVKIARLHADMDP-VTSTIEYLCTTAEKLADEGRKFDAVLS  204 (322)
T ss_pred             CCCCEEEEeeCCC-CHHHHHHHH---cCCEEEEEeCCHHHHHHHHHHHHhcC-cccceeEEecCHHHhhhccCCCCEEEE
Confidence            4678999999996 666778887   78999999999999999999877666 457899999999887765568999986


Q ss_pred             hhhccCChhHHHHHHHHHHhhccCCcEEEEeec
Q 042119          209 AALVGMSKEEKLTILGHIRKYMKDGGILLVRSA  241 (286)
Q Consensus       209 aalvg~~~~~k~~vl~~l~~~l~pgg~lv~r~~  241 (286)
                      ...+. +..+...+++++.+.|||||.+++.+.
T Consensus       205 ~~vLe-Hv~d~~~~L~~l~r~LkPGG~liist~  236 (322)
T PLN02396        205 LEVIE-HVANPAEFCKSLSALTIPNGATVLSTI  236 (322)
T ss_pred             hhHHH-hcCCHHHHHHHHHHHcCCCcEEEEEEC
Confidence            65442 234677899999999999999998763

>TIGR03840 TMPT_Se_Te thiopurine S-methyltransferase, Se/Te detoxification family

Probab=99.51  E-value=2.5e-13  Score=120.96  Aligned_cols=132  Identities=14%  Similarity=0.168  Sum_probs=97.0

Q ss_pred             HHhcCCCCcccccccCcCccchhhhhHHHHHHHHhcCCCCCCEEEEeccCCChhhHHHHHhhcCCCcEEEEEeCChHHHH
Q 042119           91 TFLTKIPQPLNNLSLFPYYGNYVKLSKLEYTILSENGVVQPKKVAFVGSGPMPLTSIIMAKHHLTSTHFDNFDIDEAAND  170 (286)
Q Consensus        91 ~~l~~~~~p~~~L~~fpy~~ny~~l~~~E~~~l~~~~~~~~~~VL~IG~G~lp~tai~lA~~~~~g~~V~~iDid~~ai~  170 (286)
                      ++-.+++.||..-+..|.+..+..          +....++.|||++||| .|..+++||+   .|.+|||+|+|+.|++
T Consensus         5 ~ry~~~~~~w~~~~p~~~l~~~~~----------~l~~~~~~rvLd~GCG-~G~da~~LA~---~G~~V~gvD~S~~Ai~   70 (213)
T TIGR03840         5 ERWQEGQIGFHQSEVNPLLVKHWP----------ALGLPAGARVFVPLCG-KSLDLAWLAE---QGHRVLGVELSEIAVE   70 (213)
T ss_pred             HHHhcCCCCCccCCCCHHHHHHHH----------hhCCCCCCeEEEeCCC-chhHHHHHHh---CCCeEEEEeCCHHHHH
Confidence            333445678876556665433322          1122466799999999 5899999998   7999999999999999


Q ss_pred             HHHHHHHhcCC-------------CCCCeEEEEccccchhhc-CCCcceeehhh-hccCChhHHHHHHHHHHhhccCCcE
Q 042119          171 VARSIVASDAE-------------FEGRMKFLTRDIMEVKEQ-LGEYDCIFLAA-LVGMSKEEKLTILGHIRKYMKDGGI  235 (286)
Q Consensus       171 ~Ar~~~~~~g~-------------l~~~i~f~~~D~~~~~~~-l~~fD~V~~aa-lvg~~~~~k~~vl~~l~~~l~pgg~  235 (286)
                      .+.+.   .|.             -..+|+|.++|+.++... .+.||.||-.. +++.+.+.+.++++.+.+.|||||+
T Consensus        71 ~~~~~---~~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~~~~fD~i~D~~~~~~l~~~~R~~~~~~l~~lLkpgG~  147 (213)
T TIGR03840        71 QFFAE---NGLTPTVTQQGEFTRYRAGNIEIFCGDFFALTAADLGPVDAVYDRAALIALPEEMRQRYAAHLLALLPPGAR  147 (213)
T ss_pred             HHHHH---cCCCcceeccccceeeecCceEEEEccCCCCCcccCCCcCEEEechhhccCCHHHHHHHHHHHHHHcCCCCe
Confidence            86442   220             024799999999886654 34699998654 3466788899999999999999997


Q ss_pred             EEEe
Q 042119          236 LLVR  239 (286)
Q Consensus       236 lv~r  239 (286)
                      +++-
T Consensus       148 ~ll~  151 (213)
T TIGR03840       148 QLLI  151 (213)
T ss_pred             EEEE
Confidence            5554

Members of this family are thiopurine S-methyltransferase from a branch in which at least some member proteins can perform selenium methylation as a means to detoxify selenium, or perform a related detoxification of tellurium. Note that the EC number definition does not specify a particular thiopurine, but rather represents a class of activity.

>PRK13944 protein-L-isoaspartate O-methyltransferase; Provisional

Probab=99.50  E-value=4.8e-13  Score=118.05  Aligned_cols=112  Identities=19%  Similarity=0.215  Sum_probs=86.4

Q ss_pred             cCCCCCCEEEEeccCCChhhHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEccccchhhcCCCcce
Q 042119          126 NGVVQPKKVAFVGSGPMPLTSIIMAKHHLTSTHFDNFDIDEAANDVARSIVASDAEFEGRMKFLTRDIMEVKEQLGEYDC  205 (286)
Q Consensus       126 ~~~~~~~~VL~IG~G~lp~tai~lA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~g~l~~~i~f~~~D~~~~~~~l~~fD~  205 (286)
                      ..+.++.+|||||||+ |+.+..+|+...++++|+++|+++++++.|++.+++.| +..+++++++|+.+.....+.||.
T Consensus        68 l~~~~~~~VLDiG~Gs-G~~~~~la~~~~~~g~V~~iD~~~~~~~~a~~~l~~~~-~~~~v~~~~~d~~~~~~~~~~fD~  145 (205)
T PRK13944         68 IEPRPGMKILEVGTGS-GYQAAVCAEAIERRGKVYTVEIVKELAIYAAQNIERLG-YWGVVEVYHGDGKRGLEKHAPFDA  145 (205)
T ss_pred             cCCCCCCEEEEECcCc-cHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcC-CCCcEEEEECCcccCCccCCCccE
Confidence            3457789999999996 66667777733346799999999999999999999999 667899999999765444468999


Q ss_pred             eehhhhccCChhHHHHHHHHHHhhccCCcEEEEeecCccee
Q 042119          206 IFLAALVGMSKEEKLTILGHIRKYMKDGGILLVRSAKGARA  246 (286)
Q Consensus       206 V~~aalvg~~~~~k~~vl~~l~~~l~pgg~lv~r~~~g~r~  246 (286)
                      |++.....       .+.+++.+.|+|||++++-...+..+
T Consensus       146 Ii~~~~~~-------~~~~~l~~~L~~gG~lvi~~~~~~~~  179 (205)
T PRK13944        146 IIVTAAAS-------TIPSALVRQLKDGGVLVIPVEEGVGQ  179 (205)
T ss_pred             EEEccCcc-------hhhHHHHHhcCcCcEEEEEEcCCCce
Confidence            99775432       23356889999999998855433334

>COG2227 UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol methylase [Coenzyme metabolism]

Probab=99.50  E-value=7.3e-14  Score=125.26  Aligned_cols=105  Identities=18%  Similarity=0.275  Sum_probs=90.7

Q ss_pred             CCCCEEEEeccCCChhhHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEccccchhhcCCCcceeeh
Q 042119          129 VQPKKVAFVGSGPMPLTSIIMAKHHLTSTHFDNFDIDEAANDVARSIVASDAEFEGRMKFLTRDIMEVKEQLGEYDCIFL  208 (286)
Q Consensus       129 ~~~~~VL~IG~G~lp~tai~lA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~g~l~~~i~f~~~D~~~~~~~l~~fD~V~~  208 (286)
                      -++.+||||||| +|.-+..||+   .|+.|||+|+++++++.|+..+...|.   .++|.++.+.++..+-+.||+|..
T Consensus        58 l~g~~vLDvGCG-gG~Lse~mAr---~Ga~VtgiD~se~~I~~Ak~ha~e~gv---~i~y~~~~~edl~~~~~~FDvV~c  130 (243)
T COG2227          58 LPGLRVLDVGCG-GGILSEPLAR---LGASVTGIDASEKPIEVAKLHALESGV---NIDYRQATVEDLASAGGQFDVVTC  130 (243)
T ss_pred             CCCCeEEEecCC-ccHhhHHHHH---CCCeeEEecCChHHHHHHHHhhhhccc---cccchhhhHHHHHhcCCCccEEEE
Confidence            478999999999 7999999999   889999999999999999999998883   488999999887765568999986


Q ss_pred             hhhccCChhHHHHHHHHHHhhccCCcEEEEeec
Q 042119          209 AALVGMSKEEKLTILGHIRKYMKDGGILLVRSA  241 (286)
Q Consensus       209 aalvg~~~~~k~~vl~~l~~~l~pgg~lv~r~~  241 (286)
                      .-.+. +-++...++..+.+.+||||.+++++.
T Consensus       131 mEVlE-Hv~dp~~~~~~c~~lvkP~G~lf~STi  162 (243)
T COG2227         131 MEVLE-HVPDPESFLRACAKLVKPGGILFLSTI  162 (243)
T ss_pred             hhHHH-ccCCHHHHHHHHHHHcCCCcEEEEecc
Confidence            65543 235666799999999999999999763

>PF13649 Methyltransf_25: Methyltransferase domain; PDB: 3BXO_B 3GGD_A 3PX2_A 3PX3_A 3PFH_D 3PFG_A 1Y8C_A

Probab=99.49  E-value=1.2e-13  Score=107.82  Aligned_cols=97  Identities=21%  Similarity=0.336  Sum_probs=77.4

Q ss_pred             EEEeccCCChhhHHHHHhhcC--CCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEccccchhhcCCCcceeehh-h
Q 042119          134 VAFVGSGPMPLTSIIMAKHHL--TSTHFDNFDIDEAANDVARSIVASDAEFEGRMKFLTRDIMEVKEQLGEYDCIFLA-A  210 (286)
Q Consensus       134 VL~IG~G~lp~tai~lA~~~~--~g~~V~~iDid~~ai~~Ar~~~~~~g~l~~~i~f~~~D~~~~~~~l~~fD~V~~a-a  210 (286)
                      |||+|||+ |..+..+++..-  +..+++++|+|+++++.|++.....+ .  +++|+++|+.+++...+.||+|+.. .
T Consensus         1 ILDlgcG~-G~~~~~l~~~~~~~~~~~~~gvD~s~~~l~~~~~~~~~~~-~--~~~~~~~D~~~l~~~~~~~D~v~~~~~   76 (101)
T PF13649_consen    1 ILDLGCGT-GRVTRALARRFDAGPSSRVIGVDISPEMLELAKKRFSEDG-P--KVRFVQADARDLPFSDGKFDLVVCSGL   76 (101)
T ss_dssp             -EEET-TT-SHHHHHHHHHS-----SEEEEEES-HHHHHHHHHHSHHTT-T--TSEEEESCTTCHHHHSSSEEEEEE-TT
T ss_pred             CEEeecCC-cHHHHHHHHHhhhcccceEEEEECCHHHHHHHHHhchhcC-C--ceEEEECCHhHCcccCCCeeEEEEcCC
Confidence            79999997 566666766321  34899999999999999999998877 3  8999999999988777789999983 3


Q ss_pred             -hccCChhHHHHHHHHHHhhccCCc
Q 042119          211 -LVGMSKEEKLTILGHIRKYMKDGG  234 (286)
Q Consensus       211 -lvg~~~~~k~~vl~~l~~~l~pgg  234 (286)
                       +...+.++..++++++.++++|||
T Consensus        77 ~~~~~~~~~~~~ll~~~~~~l~pgG  101 (101)
T PF13649_consen   77 SLHHLSPEELEALLRRIARLLRPGG  101 (101)
T ss_dssp             GGGGSSHHHHHHHHHHHHHTEEEEE
T ss_pred             ccCCCCHHHHHHHHHHHHHHhCCCC
Confidence             335677888999999999999998

>PRK00377 cbiT cobalt-precorrin-6Y C(15)-methyltransferase; Provisional

Probab=99.48  E-value=5.5e-13  Score=116.83  Aligned_cols=120  Identities=17%  Similarity=0.211  Sum_probs=93.9

Q ss_pred             hhHHHHHHH--HhcCCCCCCEEEEeccCCChhhHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEcc
Q 042119          115 LSKLEYTIL--SENGVVQPKKVAFVGSGPMPLTSIIMAKHHLTSTHFDNFDIDEAANDVARSIVASDAEFEGRMKFLTRD  192 (286)
Q Consensus       115 l~~~E~~~l--~~~~~~~~~~VL~IG~G~lp~tai~lA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~g~l~~~i~f~~~D  192 (286)
                      +.+.|..++  .+..+.++.+|+|+|||+ |.-++.+|+...++.+|+++|+++++++.|++.++..| +.++++++++|
T Consensus        23 ~t~~~~r~~~l~~l~~~~~~~vlDlG~Gt-G~~s~~~a~~~~~~~~v~avD~~~~~~~~a~~n~~~~g-~~~~v~~~~~d  100 (198)
T PRK00377         23 MTKEEIRALALSKLRLRKGDMILDIGCGT-GSVTVEASLLVGETGKVYAVDKDEKAINLTRRNAEKFG-VLNNIVLIKGE  100 (198)
T ss_pred             CCHHHHHHHHHHHcCCCCcCEEEEeCCcC-CHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHhC-CCCCeEEEEec
Confidence            455555533  455678899999999998 55566676633467899999999999999999999998 56899999999


Q ss_pred             ccchhhcC-CCcceeehhhhccCChhHHHHHHHHHHhhccCCcEEEEee
Q 042119          193 IMEVKEQL-GEYDCIFLAALVGMSKEEKLTILGHIRKYMKDGGILLVRS  240 (286)
Q Consensus       193 ~~~~~~~l-~~fD~V~~aalvg~~~~~k~~vl~~l~~~l~pgg~lv~r~  240 (286)
                      +.+..... ..||.||....    .....++++.+.+.|+|||++++..
T Consensus       101 ~~~~l~~~~~~~D~V~~~~~----~~~~~~~l~~~~~~LkpgG~lv~~~  145 (198)
T PRK00377        101 APEILFTINEKFDRIFIGGG----SEKLKEIISASWEIIKKGGRIVIDA  145 (198)
T ss_pred             hhhhHhhcCCCCCEEEECCC----cccHHHHHHHHHHHcCCCcEEEEEe
Confidence            97755444 47999997432    2455679999999999999998743

>PRK00216 ubiE ubiquinone/menaquinone biosynthesis methyltransferase; Reviewed

Probab=99.48  E-value=9e-13  Score=116.71  Aligned_cols=110  Identities=20%  Similarity=0.253  Sum_probs=87.6

Q ss_pred             CCCCCCEEEEeccCCChhhHHHHHhhcCC-CcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEccccchhhcCCCcce
Q 042119          127 GVVQPKKVAFVGSGPMPLTSIIMAKHHLT-STHFDNFDIDEAANDVARSIVASDAEFEGRMKFLTRDIMEVKEQLGEYDC  205 (286)
Q Consensus       127 ~~~~~~~VL~IG~G~lp~tai~lA~~~~~-g~~V~~iDid~~ai~~Ar~~~~~~g~l~~~i~f~~~D~~~~~~~l~~fD~  205 (286)
                      ...++.+||+||||+ |..+..+++. .+ ..+|+++|+++.+++.|++.+...+ +..+++|+.+|+.+.+...+.||+
T Consensus        48 ~~~~~~~vldiG~G~-G~~~~~l~~~-~~~~~~v~~~D~s~~~~~~a~~~~~~~~-~~~~~~~~~~d~~~~~~~~~~~D~  124 (239)
T PRK00216         48 GVRPGDKVLDLACGT-GDLAIALAKA-VGKTGEVVGLDFSEGMLAVGREKLRDLG-LSGNVEFVQGDAEALPFPDNSFDA  124 (239)
T ss_pred             CCCCCCeEEEeCCCC-CHHHHHHHHH-cCCCCeEEEEeCCHHHHHHHHHhhcccc-cccCeEEEecccccCCCCCCCccE
Confidence            345678999999998 5566677763 44 5999999999999999999988766 567899999999876655567999


Q ss_pred             eehhhhccCChhHHHHHHHHHHhhccCCcEEEEee
Q 042119          206 IFLAALVGMSKEEKLTILGHIRKYMKDGGILLVRS  240 (286)
Q Consensus       206 V~~aalvg~~~~~k~~vl~~l~~~l~pgg~lv~r~  240 (286)
                      |+....++ ...+...+++.+.+.|+|||.+++.+
T Consensus       125 I~~~~~l~-~~~~~~~~l~~~~~~L~~gG~li~~~  158 (239)
T PRK00216        125 VTIAFGLR-NVPDIDKALREMYRVLKPGGRLVILE  158 (239)
T ss_pred             EEEecccc-cCCCHHHHHHHHHHhccCCcEEEEEE
Confidence            98654432 23466789999999999999998754

>PRK13255 thiopurine S-methyltransferase; Reviewed

Probab=99.47  E-value=8.7e-13  Score=117.91  Aligned_cols=127  Identities=13%  Similarity=0.180  Sum_probs=95.0

Q ss_pred             CCCCcccccccCcCccchhhhhHHHHHHHHhcCCCCCCEEEEeccCCChhhHHHHHhhcCCCcEEEEEeCChHHHHHHHH
Q 042119           95 KIPQPLNNLSLFPYYGNYVKLSKLEYTILSENGVVQPKKVAFVGSGPMPLTSIIMAKHHLTSTHFDNFDIDEAANDVARS  174 (286)
Q Consensus        95 ~~~~p~~~L~~fpy~~ny~~l~~~E~~~l~~~~~~~~~~VL~IG~G~lp~tai~lA~~~~~g~~V~~iDid~~ai~~Ar~  174 (286)
                      +++.+|..-+.+|++..|...          ....++.|||++||| .|..+++||+   .|.+|+|||+|+.|++.+.+
T Consensus        12 ~~~~~~~~~~p~~~L~~~~~~----------~~~~~~~rvL~~gCG-~G~da~~LA~---~G~~V~avD~s~~Ai~~~~~   77 (218)
T PRK13255         12 ENQIGFHQEEVNPLLQKYWPA----------LALPAGSRVLVPLCG-KSLDMLWLAE---QGHEVLGVELSELAVEQFFA   77 (218)
T ss_pred             CCCCCCCCCCCCHHHHHHHHh----------hCCCCCCeEEEeCCC-ChHhHHHHHh---CCCeEEEEccCHHHHHHHHH
Confidence            345567655667765544321          122456799999999 6899999998   89999999999999998743


Q ss_pred             HHHhcCC-------------CCCCeEEEEccccchhhc-CCCcceeehhhh-ccCChhHHHHHHHHHHhhccCCcEEEE
Q 042119          175 IVASDAE-------------FEGRMKFLTRDIMEVKEQ-LGEYDCIFLAAL-VGMSKEEKLTILGHIRKYMKDGGILLV  238 (286)
Q Consensus       175 ~~~~~g~-------------l~~~i~f~~~D~~~~~~~-l~~fD~V~~aal-vg~~~~~k~~vl~~l~~~l~pgg~lv~  238 (286)
                         +.|.             .+.+|++.++|+.++... ...||.||-.+. +..+.+.+.++++.+.+.|+|||++++
T Consensus        78 ---~~~l~~~~~~~~~~~~~~~~~v~~~~~D~~~l~~~~~~~fd~v~D~~~~~~l~~~~R~~~~~~l~~lL~pgG~~~l  153 (218)
T PRK13255         78 ---ENGLTPQTRQSGEFEHYQAGEITIYCGDFFALTAADLADVDAVYDRAALIALPEEMRERYVQQLAALLPAGCRGLL  153 (218)
T ss_pred             ---HcCCCccccccccccccccCceEEEECcccCCCcccCCCeeEEEehHhHhhCCHHHHHHHHHHHHHHcCCCCeEEE
Confidence               2221             136899999999887543 357999996543 355788999999999999999986444

>TIGR00080 pimt protein-L-isoaspartate(D-aspartate) O-methyltransferase

Probab=99.45  E-value=8.6e-13  Score=117.02  Aligned_cols=107  Identities=18%  Similarity=0.170  Sum_probs=84.7

Q ss_pred             hcCCCCCCEEEEeccCCChhhHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEccccchhhcCCCcc
Q 042119          125 ENGVVQPKKVAFVGSGPMPLTSIIMAKHHLTSTHFDNFDIDEAANDVARSIVASDAEFEGRMKFLTRDIMEVKEQLGEYD  204 (286)
Q Consensus       125 ~~~~~~~~~VL~IG~G~lp~tai~lA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~g~l~~~i~f~~~D~~~~~~~l~~fD  204 (286)
                      ...+.++.+|||||||+ |..+..+|+...++++|+++|+++++++.|++.+++.| + ++++++++|+.+.......||
T Consensus        72 ~l~~~~~~~VLDiG~Gs-G~~a~~la~~~~~~g~V~~vD~~~~~~~~A~~~~~~~g-~-~~v~~~~~d~~~~~~~~~~fD  148 (215)
T TIGR00080        72 LLELKPGMKVLEIGTGS-GYQAAVLAEIVGRDGLVVSIERIPELAEKAERRLRKLG-L-DNVIVIVGDGTQGWEPLAPYD  148 (215)
T ss_pred             HhCCCCcCEEEEECCCc-cHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHCC-C-CCeEEEECCcccCCcccCCCC
Confidence            34568899999999996 66667888743345689999999999999999999999 4 689999999976544445799


Q ss_pred             eeehhhhccCChhHHHHHHHHHHhhccCCcEEEEeec
Q 042119          205 CIFLAALVGMSKEEKLTILGHIRKYMKDGGILLVRSA  241 (286)
Q Consensus       205 ~V~~aalvg~~~~~k~~vl~~l~~~l~pgg~lv~r~~  241 (286)
                      +|++....       ..+.+.+.+.|+|||++++--.
T Consensus       149 ~Ii~~~~~-------~~~~~~~~~~L~~gG~lv~~~~  178 (215)
T TIGR00080       149 RIYVTAAG-------PKIPEALIDQLKEGGILVMPVG  178 (215)
T ss_pred             EEEEcCCc-------ccccHHHHHhcCcCcEEEEEEc
Confidence            99976532       2345668899999999888543

Among the prokaryotes, the gene name is pcm. Among eukaryotes, pimt.

>PRK13942 protein-L-isoaspartate O-methyltransferase; Provisional

Probab=99.45  E-value=1.2e-12  Score=116.24  Aligned_cols=106  Identities=18%  Similarity=0.205  Sum_probs=84.1

Q ss_pred             hcCCCCCCEEEEeccCCChhhHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEccccchhhcCCCcc
Q 042119          125 ENGVVQPKKVAFVGSGPMPLTSIIMAKHHLTSTHFDNFDIDEAANDVARSIVASDAEFEGRMKFLTRDIMEVKEQLGEYD  204 (286)
Q Consensus       125 ~~~~~~~~~VL~IG~G~lp~tai~lA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~g~l~~~i~f~~~D~~~~~~~l~~fD  204 (286)
                      ...+.++.+||+||||+ |+.+..+|+...++++|+++|+++++++.|++.++..| + .+++++++|+.+...+...||
T Consensus        71 ~l~~~~g~~VLdIG~Gs-G~~t~~la~~~~~~~~V~~vE~~~~~~~~a~~~l~~~g-~-~~v~~~~gd~~~~~~~~~~fD  147 (212)
T PRK13942         71 LLDLKEGMKVLEIGTGS-GYHAAVVAEIVGKSGKVVTIERIPELAEKAKKTLKKLG-Y-DNVEVIVGDGTLGYEENAPYD  147 (212)
T ss_pred             HcCCCCcCEEEEECCcc-cHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcC-C-CCeEEEECCcccCCCcCCCcC
Confidence            34568899999999996 66677787743456899999999999999999999998 3 689999999876544446799


Q ss_pred             eeehhhhccCChhHHHHHHHHHHhhccCCcEEEEee
Q 042119          205 CIFLAALVGMSKEEKLTILGHIRKYMKDGGILLVRS  240 (286)
Q Consensus       205 ~V~~aalvg~~~~~k~~vl~~l~~~l~pgg~lv~r~  240 (286)
                      +|++.+.+.       ++.+.+.+.|||||++++--
T Consensus       148 ~I~~~~~~~-------~~~~~l~~~LkpgG~lvi~~  176 (212)
T PRK13942        148 RIYVTAAGP-------DIPKPLIEQLKDGGIMVIPV  176 (212)
T ss_pred             EEEECCCcc-------cchHHHHHhhCCCcEEEEEE
Confidence            999765431       23456778899999988854

>TIGR02716 C20_methyl_CrtF C-20 methyltransferase BchU

Probab=99.45  E-value=1.1e-12  Score=122.09  Aligned_cols=109  Identities=21%  Similarity=0.255  Sum_probs=90.3

Q ss_pred             cCCCCCCEEEEeccCCChhhHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEccccchhhcCCCcce
Q 042119          126 NGVVQPKKVAFVGSGPMPLTSIIMAKHHLTSTHFDNFDIDEAANDVARSIVASDAEFEGRMKFLTRDIMEVKEQLGEYDC  205 (286)
Q Consensus       126 ~~~~~~~~VL~IG~G~lp~tai~lA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~g~l~~~i~f~~~D~~~~~~~l~~fD~  205 (286)
                      ....++.+|||||||+ |.-++.+++ .+|+.+++++|. |++++.|++.+++.| +.+|++++.+|..+.  ++.++|+
T Consensus       145 ~~~~~~~~vlDiG~G~-G~~~~~~~~-~~p~~~~~~~D~-~~~~~~a~~~~~~~g-l~~rv~~~~~d~~~~--~~~~~D~  218 (306)
T TIGR02716       145 AKLDGVKKMIDVGGGI-GDISAAMLK-HFPELDSTILNL-PGAIDLVNENAAEKG-VADRMRGIAVDIYKE--SYPEADA  218 (306)
T ss_pred             cCCCCCCEEEEeCCch-hHHHHHHHH-HCCCCEEEEEec-HHHHHHHHHHHHhCC-ccceEEEEecCccCC--CCCCCCE
Confidence            3456779999999997 666777887 478999999998 799999999999999 789999999998653  3456899


Q ss_pred             eehhhhc-cCChhHHHHHHHHHHhhccCCcEEEEee
Q 042119          206 IFLAALV-GMSKEEKLTILGHIRKYMKDGGILLVRS  240 (286)
Q Consensus       206 V~~aalv-g~~~~~k~~vl~~l~~~l~pgg~lv~r~  240 (286)
                      |++.... .++.+...++++++++.|+|||++++-+
T Consensus       219 v~~~~~lh~~~~~~~~~il~~~~~~L~pgG~l~i~d  254 (306)
T TIGR02716       219 VLFCRILYSANEQLSTIMCKKAFDAMRSGGRLLILD  254 (306)
T ss_pred             EEeEhhhhcCChHHHHHHHHHHHHhcCCCCEEEEEE
Confidence            8876543 4555566789999999999999998875

Members of this protein family are the S-adenosylmethionine-depenedent C-20 methyltransferase BchU, part of the pathway of bacteriochlorophyll c production in photosynthetic green sulfur bacteria. The position modified by this enzyme represents the difference between bacteriochlorophylls c and d; strains lacking this protein can only produced bacteriochlorophyll d.

>COG2242 CobL Precorrin-6B methylase 2 [Coenzyme metabolism]

Probab=99.44  E-value=2.1e-12  Score=112.07  Aligned_cols=119  Identities=22%  Similarity=0.177  Sum_probs=100.6

Q ss_pred             hhhhHHHHHHH--HhcCCCCCCEEEEeccCCChhhHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEE
Q 042119          113 VKLSKLEYTIL--SENGVVQPKKVAFVGSGPMPLTSIIMAKHHLTSTHFDNFDIDEAANDVARSIVASDAEFEGRMKFLT  190 (286)
Q Consensus       113 ~~l~~~E~~~l--~~~~~~~~~~VL~IG~G~lp~tai~lA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~g~l~~~i~f~~  190 (286)
                      .++++.|..++  .+..+.++++++|||||++.+| +-+|. ..|..+|++||.|+++++..+++++++|.  ++++.+.
T Consensus        15 ~p~TK~EIRal~ls~L~~~~g~~l~DIGaGtGsi~-iE~a~-~~p~~~v~AIe~~~~a~~~~~~N~~~fg~--~n~~vv~   90 (187)
T COG2242          15 GPMTKEEIRALTLSKLRPRPGDRLWDIGAGTGSIT-IEWAL-AGPSGRVIAIERDEEALELIERNAARFGV--DNLEVVE   90 (187)
T ss_pred             CCCcHHHHHHHHHHhhCCCCCCEEEEeCCCccHHH-HHHHH-hCCCceEEEEecCHHHHHHHHHHHHHhCC--CcEEEEe
Confidence            45788888754  4445799999999999987666 44554 57999999999999999999999999994  8999999


Q ss_pred             ccccchhhcCCCcceeehhhhccCChhHHHHHHHHHHhhccCCcEEEEee
Q 042119          191 RDIMEVKEQLGEYDCIFLAALVGMSKEEKLTILGHIRKYMKDGGILLVRS  240 (286)
Q Consensus       191 ~D~~~~~~~l~~fD~V~~aalvg~~~~~k~~vl~~l~~~l~pgg~lv~r~  240 (286)
                      ||+-+...++.+||.||+-..     ..-..+++.+..+|+|||+||+.-
T Consensus        91 g~Ap~~L~~~~~~daiFIGGg-----~~i~~ile~~~~~l~~ggrlV~na  135 (187)
T COG2242          91 GDAPEALPDLPSPDAIFIGGG-----GNIEEILEAAWERLKPGGRLVANA  135 (187)
T ss_pred             ccchHhhcCCCCCCEEEECCC-----CCHHHHHHHHHHHcCcCCeEEEEe
Confidence            999888777778999998754     355689999999999999999963

>PRK14103 trans-aconitate 2-methyltransferase; Provisional

Probab=99.44  E-value=8.9e-13  Score=119.67  Aligned_cols=105  Identities=18%  Similarity=0.232  Sum_probs=83.5

Q ss_pred             HHHhcCCCCCCEEEEeccCCChhhHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEccccchhhcCC
Q 042119          122 ILSENGVVQPKKVAFVGSGPMPLTSIIMAKHHLTSTHFDNFDIDEAANDVARSIVASDAEFEGRMKFLTRDIMEVKEQLG  201 (286)
Q Consensus       122 ~l~~~~~~~~~~VL~IG~G~lp~tai~lA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~g~l~~~i~f~~~D~~~~~~~l~  201 (286)
                      .+......++.+|||||||+ |..+..+++ ..|+++|+|+|+|+.+++.|++.         +++|+++|+.++. ..+
T Consensus        21 ll~~l~~~~~~~vLDlGcG~-G~~~~~l~~-~~p~~~v~gvD~s~~~~~~a~~~---------~~~~~~~d~~~~~-~~~   88 (255)
T PRK14103         21 LLARVGAERARRVVDLGCGP-GNLTRYLAR-RWPGAVIEALDSSPEMVAAARER---------GVDARTGDVRDWK-PKP   88 (255)
T ss_pred             HHHhCCCCCCCEEEEEcCCC-CHHHHHHHH-HCCCCEEEEEECCHHHHHHHHhc---------CCcEEEcChhhCC-CCC
Confidence            34455567889999999997 555677777 36789999999999999999762         3789999997764 335


Q ss_pred             CcceeehhhhccCChhHHHHHHHHHHhhccCCcEEEEe
Q 042119          202 EYDCIFLAALVGMSKEEKLTILGHIRKYMKDGGILLVR  239 (286)
Q Consensus       202 ~fD~V~~aalvg~~~~~k~~vl~~l~~~l~pgg~lv~r  239 (286)
                      .||+|+....+++ .+++.+++.++.+.|||||.+++.
T Consensus        89 ~fD~v~~~~~l~~-~~d~~~~l~~~~~~LkpgG~l~~~  125 (255)
T PRK14103         89 DTDVVVSNAALQW-VPEHADLLVRWVDELAPGSWIAVQ  125 (255)
T ss_pred             CceEEEEehhhhh-CCCHHHHHHHHHHhCCCCcEEEEE
Confidence            8999997665433 246678999999999999999885

>smart00828 PKS_MT Methyltransferase in polyketide synthase (PKS) enzymes

Probab=99.43  E-value=1.3e-12  Score=115.83  Aligned_cols=104  Identities=22%  Similarity=0.385  Sum_probs=85.8

Q ss_pred             CEEEEeccCCChhhHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEccccchhhcCCCcceeehhhh
Q 042119          132 KKVAFVGSGPMPLTSIIMAKHHLTSTHFDNFDIDEAANDVARSIVASDAEFEGRMKFLTRDIMEVKEQLGEYDCIFLAAL  211 (286)
Q Consensus       132 ~~VL~IG~G~lp~tai~lA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~g~l~~~i~f~~~D~~~~~~~l~~fD~V~~aal  211 (286)
                      ++||+||||. |..+..+++ .+++++|+|+|+|+++++.|++.+...| +.++++|+.+|..+.+.+ +.||+|+....
T Consensus         1 ~~vLDiGcG~-G~~~~~la~-~~~~~~v~gid~s~~~~~~a~~~~~~~g-l~~~i~~~~~d~~~~~~~-~~fD~I~~~~~   76 (224)
T smart00828        1 KRVLDFGCGY-GSDLIDLAE-RHPHLQLHGYTISPEQAEVGRERIRALG-LQGRIRIFYRDSAKDPFP-DTYDLVFGFEV   76 (224)
T ss_pred             CeEEEECCCC-CHHHHHHHH-HCCCCEEEEEECCHHHHHHHHHHHHhcC-CCcceEEEecccccCCCC-CCCCEeehHHH
Confidence            4899999997 556677777 4678999999999999999999999999 788999999998654332 47999986544


Q ss_pred             ccCChhHHHHHHHHHHhhccCCcEEEEee
Q 042119          212 VGMSKEEKLTILGHIRKYMKDGGILLVRS  240 (286)
Q Consensus       212 vg~~~~~k~~vl~~l~~~l~pgg~lv~r~  240 (286)
                      .++ ..++..+++++.+.|+|||.+++.+
T Consensus        77 l~~-~~~~~~~l~~~~~~LkpgG~l~i~~  104 (224)
T smart00828       77 IHH-IKDKMDLFSNISRHLKDGGHLVLAD  104 (224)
T ss_pred             HHh-CCCHHHHHHHHHHHcCCCCEEEEEE
Confidence            322 2567899999999999999999875

>PRK00121 trmB tRNA (guanine-N(7)-)-methyltransferase; Reviewed

Probab=99.43  E-value=7e-13  Score=116.83  Aligned_cols=108  Identities=18%  Similarity=0.168  Sum_probs=83.9

Q ss_pred             CCCCEEEEeccCCChhhHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEccc-cchh--hcCCCcce
Q 042119          129 VQPKKVAFVGSGPMPLTSIIMAKHHLTSTHFDNFDIDEAANDVARSIVASDAEFEGRMKFLTRDI-MEVK--EQLGEYDC  205 (286)
Q Consensus       129 ~~~~~VL~IG~G~lp~tai~lA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~g~l~~~i~f~~~D~-~~~~--~~l~~fD~  205 (286)
                      .++.+|||||||+ |..+..+|+ ..++.+|+|+|+|+++++.|++.++..+ + .+++|+++|+ ..++  .+.+.||.
T Consensus        39 ~~~~~VLDiGcGt-G~~~~~la~-~~p~~~v~gVD~s~~~i~~a~~~~~~~~-~-~~v~~~~~d~~~~l~~~~~~~~~D~  114 (202)
T PRK00121         39 NDAPIHLEIGFGK-GEFLVEMAK-ANPDINFIGIEVHEPGVGKALKKIEEEG-L-TNLRLLCGDAVEVLLDMFPDGSLDR  114 (202)
T ss_pred             CCCCeEEEEccCC-CHHHHHHHH-HCCCccEEEEEechHHHHHHHHHHHHcC-C-CCEEEEecCHHHHHHHHcCccccce
Confidence            3678999999997 555667776 3688999999999999999999999888 4 6799999999 5554  23357999


Q ss_pred             eehhhhccCCh--h-----HHHHHHHHHHhhccCCcEEEEee
Q 042119          206 IFLAALVGMSK--E-----EKLTILGHIRKYMKDGGILLVRS  240 (286)
Q Consensus       206 V~~aalvg~~~--~-----~k~~vl~~l~~~l~pgg~lv~r~  240 (286)
                      |++.....+..  .     ....+++++.+.|+|||.+++.+
T Consensus       115 V~~~~~~p~~~~~~~~~~~~~~~~l~~i~~~LkpgG~l~i~~  156 (202)
T PRK00121        115 IYLNFPDPWPKKRHHKRRLVQPEFLALYARKLKPGGEIHFAT  156 (202)
T ss_pred             EEEECCCCCCCccccccccCCHHHHHHHHHHcCCCCEEEEEc
Confidence            98642211110  0     13579999999999999999875

>PF03848 TehB: Tellurite resistance protein TehB; InterPro: IPR015985 Tellurite resistance protein TehB is part of a tellurite-reducing operon tehA and tehB

Probab=99.42  E-value=2.7e-12  Score=112.59  Aligned_cols=106  Identities=18%  Similarity=0.306  Sum_probs=83.0

Q ss_pred             CCCCCCEEEEeccCCChhhHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEccccchhhcCCCccee
Q 042119          127 GVVQPKKVAFVGSGPMPLTSIIMAKHHLTSTHFDNFDIDEAANDVARSIVASDAEFEGRMKFLTRDIMEVKEQLGEYDCI  206 (286)
Q Consensus       127 ~~~~~~~VL~IG~G~lp~tai~lA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~g~l~~~i~f~~~D~~~~~~~l~~fD~V  206 (286)
                      ...++.++||+||| -|..|++||+   .|..|+++|+|+.+++.+++++++.+ +  .|+..+.|+.+...+ +.||+|
T Consensus        27 ~~~~~g~~LDlgcG-~GRNalyLA~---~G~~VtAvD~s~~al~~l~~~a~~~~-l--~i~~~~~Dl~~~~~~-~~yD~I   98 (192)
T PF03848_consen   27 PLLKPGKALDLGCG-EGRNALYLAS---QGFDVTAVDISPVALEKLQRLAEEEG-L--DIRTRVADLNDFDFP-EEYDFI   98 (192)
T ss_dssp             TTS-SSEEEEES-T-TSHHHHHHHH---TT-EEEEEESSHHHHHHHHHHHHHTT----TEEEEE-BGCCBS-T-TTEEEE
T ss_pred             hhcCCCcEEEcCCC-CcHHHHHHHH---CCCeEEEEECCHHHHHHHHHHHhhcC-c--eeEEEEecchhcccc-CCcCEE
Confidence            34578899999999 5899999999   89999999999999999999999988 3  499999998775543 579998


Q ss_pred             ehhh-hccCChhHHHHHHHHHHhhccCCcEEEEee
Q 042119          207 FLAA-LVGMSKEEKLTILGHIRKYMKDGGILLVRS  240 (286)
Q Consensus       207 ~~aa-lvg~~~~~k~~vl~~l~~~l~pgg~lv~r~  240 (286)
                      +... +...+.+...++++.+.+.++|||++++..
T Consensus        99 ~st~v~~fL~~~~~~~i~~~m~~~~~pGG~~li~~  133 (192)
T PF03848_consen   99 VSTVVFMFLQRELRPQIIENMKAATKPGGYNLIVT  133 (192)
T ss_dssp             EEESSGGGS-GGGHHHHHHHHHHTEEEEEEEEEEE
T ss_pred             EEEEEeccCCHHHHHHHHHHHHhhcCCcEEEEEEE
Confidence            7321 113356777889999999999999988754

When present in high copy number, TehB is responsible for potassium tellurite resistance, probably by increasing the reduction rate of tellurite to metallic tellurium within the bacterium. TehB is a cytoplasmic protein which possesses three conserved motifs (I, II, and III) found in S-adenosyl-L-methionine (SAM)-dependent non-nucleic acid methyltransferases []. Conformational changes in TehB are observed upon binding of both tellurite and SAM, suggesting that TehB utilises a methyltransferase activity in the detoxification of tellurite. This entry represents the methyltransferase domain found in all TehB proteins.; PDB: 2KW5_A 3MER_B 3M70_A 2I6G_A 4DQ0_D 2XVA_B 2XVM_A.

>PRK04457 spermidine synthase; Provisional

Probab=99.42  E-value=8.3e-13  Score=121.08  Aligned_cols=147  Identities=18%  Similarity=0.162  Sum_probs=101.6

Q ss_pred             CCCCEEEEeccCCChhhHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEccccchhhcC-CCcceee
Q 042119          129 VQPKKVAFVGSGPMPLTSIIMAKHHLTSTHFDNFDIDEAANDVARSIVASDAEFEGRMKFLTRDIMEVKEQL-GEYDCIF  207 (286)
Q Consensus       129 ~~~~~VL~IG~G~lp~tai~lA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~g~l~~~i~f~~~D~~~~~~~l-~~fD~V~  207 (286)
                      .++++||+|||| .|..+..+++ ..|+++|+++|+||++++.|++.+...+ ..++++++++|+.+..... +.||+|+
T Consensus        65 ~~~~~vL~IG~G-~G~l~~~l~~-~~p~~~v~~VEidp~vi~~A~~~f~~~~-~~~rv~v~~~Da~~~l~~~~~~yD~I~  141 (262)
T PRK04457         65 PRPQHILQIGLG-GGSLAKFIYT-YLPDTRQTAVEINPQVIAVARNHFELPE-NGERFEVIEADGAEYIAVHRHSTDVIL  141 (262)
T ss_pred             CCCCEEEEECCC-HhHHHHHHHH-hCCCCeEEEEECCHHHHHHHHHHcCCCC-CCCceEEEECCHHHHHHhCCCCCCEEE
Confidence            567899999999 5777777877 4789999999999999999999977555 3579999999998765443 4799999


Q ss_pred             hhhhcc--CChh-HHHHHHHHHHhhccCCcEEEEeecCcceeeecccCCcccc-cCcEEEEEecCcccceeeeEEEee
Q 042119          208 LAALVG--MSKE-EKLTILGHIRKYMKDGGILLVRSAKGARAFLYPVVVEHDL-LDFEVLSAVHPNDDVINSVVLVRN  281 (286)
Q Consensus       208 ~aalvg--~~~~-~k~~vl~~l~~~l~pgg~lv~r~~~g~r~~lyp~v~~~~l-~gf~~~~~~~P~~~vinsvi~~r~  281 (286)
                      +++.-+  ++.. ...++++.+.+.|+|||++++.-...  .-.++.+ ...+ .-|.-...+-|..+-.|.++++.|
T Consensus       142 ~D~~~~~~~~~~l~t~efl~~~~~~L~pgGvlvin~~~~--~~~~~~~-l~~l~~~F~~~~~~~~~~~~~N~v~~a~~  216 (262)
T PRK04457        142 VDGFDGEGIIDALCTQPFFDDCRNALSSDGIFVVNLWSR--DKRYDRY-LERLESSFEGRVLELPAESHGNVAVFAFK  216 (262)
T ss_pred             EeCCCCCCCccccCcHHHHHHHHHhcCCCcEEEEEcCCC--chhHHHH-HHHHHHhcCCcEEEEecCCCccEEEEEEC
Confidence            886532  1111 12689999999999999999853211  1111110 0111 235422222244444588888876

>PRK08287 cobalt-precorrin-6Y C(15)-methyltransferase; Validated

Probab=99.42  E-value=2.7e-12  Score=111.19  Aligned_cols=106  Identities=17%  Similarity=0.185  Sum_probs=84.8

Q ss_pred             hcCCCCCCEEEEeccCCChhhHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEccccchhhcCCCcc
Q 042119          125 ENGVVQPKKVAFVGSGPMPLTSIIMAKHHLTSTHFDNFDIDEAANDVARSIVASDAEFEGRMKFLTRDIMEVKEQLGEYD  204 (286)
Q Consensus       125 ~~~~~~~~~VL~IG~G~lp~tai~lA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~g~l~~~i~f~~~D~~~~~~~l~~fD  204 (286)
                      .....++.+|||||||+ |..++.+++ ..++++|+++|+|+++++.|++++++.+ + .+++++++|+.. .. .+.||
T Consensus        26 ~l~~~~~~~vLDiG~G~-G~~~~~la~-~~~~~~v~~vD~s~~~~~~a~~n~~~~~-~-~~i~~~~~d~~~-~~-~~~~D   99 (187)
T PRK08287         26 KLELHRAKHLIDVGAGT-GSVSIEAAL-QFPSLQVTAIERNPDALRLIKENRQRFG-C-GNIDIIPGEAPI-EL-PGKAD   99 (187)
T ss_pred             hcCCCCCCEEEEECCcC-CHHHHHHHH-HCCCCEEEEEECCHHHHHHHHHHHHHhC-C-CCeEEEecCchh-hc-CcCCC
Confidence            33456889999999996 677777777 3678999999999999999999999988 4 579999999742 11 24799


Q ss_pred             eeehhhhccCChhHHHHHHHHHHhhccCCcEEEEee
Q 042119          205 CIFLAALVGMSKEEKLTILGHIRKYMKDGGILLVRS  240 (286)
Q Consensus       205 ~V~~aalvg~~~~~k~~vl~~l~~~l~pgg~lv~r~  240 (286)
                      +|+.....    ....++++.+.+.|+|||.+++..
T Consensus       100 ~v~~~~~~----~~~~~~l~~~~~~Lk~gG~lv~~~  131 (187)
T PRK08287        100 AIFIGGSG----GNLTAIIDWSLAHLHPGGRLVLTF  131 (187)
T ss_pred             EEEECCCc----cCHHHHHHHHHHhcCCCeEEEEEE
Confidence            99976433    234568999999999999998853

>COG2230 Cfa Cyclopropane fatty acid synthase and related methyltransferases [Cell envelope biogenesis, outer membrane]

Probab=99.41  E-value=2.1e-12  Score=119.04  Aligned_cols=112  Identities=20%  Similarity=0.257  Sum_probs=93.7

Q ss_pred             HHHhcCCCCCCEEEEeccCCChhhHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEccccchhhcCC
Q 042119          122 ILSENGVVQPKKVAFVGSGPMPLTSIIMAKHHLTSTHFDNFDIDEAANDVARSIVASDAEFEGRMKFLTRDIMEVKEQLG  201 (286)
Q Consensus       122 ~l~~~~~~~~~~VL~IG~G~lp~tai~lA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~g~l~~~i~f~~~D~~~~~~~l~  201 (286)
                      .+.+.++.+|++|||||||- |.+++.+|++  .|++|+|+++|++..+.|++.+++.| ++++++++..|-.++..   
T Consensus        64 ~~~kl~L~~G~~lLDiGCGW-G~l~~~aA~~--y~v~V~GvTlS~~Q~~~~~~r~~~~g-l~~~v~v~l~d~rd~~e---  136 (283)
T COG2230          64 ILEKLGLKPGMTLLDIGCGW-GGLAIYAAEE--YGVTVVGVTLSEEQLAYAEKRIAARG-LEDNVEVRLQDYRDFEE---  136 (283)
T ss_pred             HHHhcCCCCCCEEEEeCCCh-hHHHHHHHHH--cCCEEEEeeCCHHHHHHHHHHHHHcC-CCcccEEEecccccccc---
Confidence            34566789999999999995 7778999984  59999999999999999999999999 88899999999866553   


Q ss_pred             Ccceeehhhhc-cCChhHHHHHHHHHHhhccCCcEEEEee
Q 042119          202 EYDCIFLAALV-GMSKEEKLTILGHIRKYMKDGGILLVRS  240 (286)
Q Consensus       202 ~fD~V~~aalv-g~~~~~k~~vl~~l~~~l~pgg~lv~r~  240 (286)
                      .||-|.-.... .+..+....+++.+.+.|+|||++++.+
T Consensus       137 ~fDrIvSvgmfEhvg~~~~~~ff~~~~~~L~~~G~~llh~  176 (283)
T COG2230         137 PFDRIVSVGMFEHVGKENYDDFFKKVYALLKPGGRMLLHS  176 (283)
T ss_pred             ccceeeehhhHHHhCcccHHHHHHHHHhhcCCCceEEEEE
Confidence            49987633222 2234678899999999999999999986

>COG2519 GCD14 tRNA(1-methyladenosine) methyltransferase and related methyltransferases [Translation, ribosomal structure and biogenesis]

Probab=99.41  E-value=2.1e-12  Score=116.65  Aligned_cols=152  Identities=21%  Similarity=0.330  Sum_probs=115.7

Q ss_pred             HhcCCCCCCEEEEeccCCChhhHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEccccchhhcCCCc
Q 042119          124 SENGVVQPKKVAFVGSGPMPLTSIIMAKHHLTSTHFDNFDIDEAANDVARSIVASDAEFEGRMKFLTRDIMEVKEQLGEY  203 (286)
Q Consensus       124 ~~~~~~~~~~VL~IG~G~lp~tai~lA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~g~l~~~i~f~~~D~~~~~~~l~~f  203 (286)
                      .+.++.+++||++.|.|.+- -+..||....+.++|+.+|+.++..+.|+++++.+| +.+++++..+|+.+...+. .|
T Consensus        88 ~~~gi~pg~rVlEAGtGSG~-lt~~La~~vg~~G~v~tyE~r~d~~k~A~~Nl~~~~-l~d~v~~~~~Dv~~~~~~~-~v  164 (256)
T COG2519          88 ARLGISPGSRVLEAGTGSGA-LTAYLARAVGPEGHVTTYEIREDFAKTARENLSEFG-LGDRVTLKLGDVREGIDEE-DV  164 (256)
T ss_pred             HHcCCCCCCEEEEcccCchH-HHHHHHHhhCCCceEEEEEecHHHHHHHHHHHHHhc-cccceEEEecccccccccc-cc
Confidence            35678999999999999754 456677656778999999999999999999999999 7888999999998866554 89


Q ss_pred             ceeehhhhccCChhHHHHHHHHHHhhccCCcEEEEeec---------CcceeeecccCCcccc--cCcEEE-EEecCccc
Q 042119          204 DCIFLAALVGMSKEEKLTILGHIRKYMKDGGILLVRSA---------KGARAFLYPVVVEHDL--LDFEVL-SAVHPNDD  271 (286)
Q Consensus       204 D~V~~aalvg~~~~~k~~vl~~l~~~l~pgg~lv~r~~---------~g~r~~lyp~v~~~~l--~gf~~~-~~~~P~~~  271 (286)
                      |+||++-      ++..++++++.+.|+|||.+++=.+         ..++..-|-..+..++  +.|++. ..++|...
T Consensus       165 Dav~LDm------p~PW~~le~~~~~Lkpgg~~~~y~P~veQv~kt~~~l~~~g~~~ie~~E~l~R~~~v~~~~~RP~~~  238 (256)
T COG2519         165 DAVFLDL------PDPWNVLEHVSDALKPGGVVVVYSPTVEQVEKTVEALRERGFVDIEAVETLVRRWEVRKEATRPETR  238 (256)
T ss_pred             CEEEEcC------CChHHHHHHHHHHhCCCcEEEEEcCCHHHHHHHHHHHHhcCccchhhheeeeheeeecccccCcccc
Confidence            9999883      5778999999999999999998652         2333321111122222  567765 66788865


Q ss_pred             -ceee--eEEEeecCC
Q 042119          272 -VINS--VVLVRNSQG  284 (286)
Q Consensus       272 -vins--vi~~r~~~~  284 (286)
                       +-.|  ++++||..+
T Consensus       239 ~v~HTgyivf~R~~~~  254 (256)
T COG2519         239 MVGHTGYIVFARKLGG  254 (256)
T ss_pred             cccceeEEEEEeeccC
Confidence             4445  778888543

>PLN02336 phosphoethanolamine N-methyltransferase

Probab=99.41  E-value=1.8e-12  Score=127.63  Aligned_cols=111  Identities=18%  Similarity=0.217  Sum_probs=88.4

Q ss_pred             HHhcCCCCCCEEEEeccCCChhhHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEccccchhhcCCC
Q 042119          123 LSENGVVQPKKVAFVGSGPMPLTSIIMAKHHLTSTHFDNFDIDEAANDVARSIVASDAEFEGRMKFLTRDIMEVKEQLGE  202 (286)
Q Consensus       123 l~~~~~~~~~~VL~IG~G~lp~tai~lA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~g~l~~~i~f~~~D~~~~~~~l~~  202 (286)
                      +....+.++.+|||||||+ |..++.+|+.  .+++|+|+|+|+++++.|++...  + ...+++|+++|+.+.+.+.+.
T Consensus       259 ~~~~~~~~~~~vLDiGcG~-G~~~~~la~~--~~~~v~gvDiS~~~l~~A~~~~~--~-~~~~v~~~~~d~~~~~~~~~~  332 (475)
T PLN02336        259 VDKLDLKPGQKVLDVGCGI-GGGDFYMAEN--FDVHVVGIDLSVNMISFALERAI--G-RKCSVEFEVADCTKKTYPDNS  332 (475)
T ss_pred             HHhcCCCCCCEEEEEeccC-CHHHHHHHHh--cCCEEEEEECCHHHHHHHHHHhh--c-CCCceEEEEcCcccCCCCCCC
Confidence            3344457788999999997 5566888873  48999999999999999998765  4 346899999999876554457


Q ss_pred             cceeehhhhccCChhHHHHHHHHHHhhccCCcEEEEee
Q 042119          203 YDCIFLAALVGMSKEEKLTILGHIRKYMKDGGILLVRS  240 (286)
Q Consensus       203 fD~V~~aalvg~~~~~k~~vl~~l~~~l~pgg~lv~r~  240 (286)
                      ||+|+....+. +.+++.+++.++++.|+|||.+++.+
T Consensus       333 fD~I~s~~~l~-h~~d~~~~l~~~~r~LkpgG~l~i~~  369 (475)
T PLN02336        333 FDVIYSRDTIL-HIQDKPALFRSFFKWLKPGGKVLISD  369 (475)
T ss_pred             EEEEEECCccc-ccCCHHHHHHHHHHHcCCCeEEEEEE
Confidence            99998654432 23577899999999999999999875

>PRK07402 precorrin-6B methylase; Provisional

Probab=99.39  E-value=6.4e-12  Score=109.75  Aligned_cols=117  Identities=17%  Similarity=0.179  Sum_probs=89.5

Q ss_pred             hhHHHHHH--HHhcCCCCCCEEEEeccCCChhhHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEcc
Q 042119          115 LSKLEYTI--LSENGVVQPKKVAFVGSGPMPLTSIIMAKHHLTSTHFDNFDIDEAANDVARSIVASDAEFEGRMKFLTRD  192 (286)
Q Consensus       115 l~~~E~~~--l~~~~~~~~~~VL~IG~G~lp~tai~lA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~g~l~~~i~f~~~D  192 (286)
                      +++.|...  +....+.++.+|||+|||+ |..++.+|+ ..++++|+++|+|+++++.|++.+++.| + .+++++++|
T Consensus        23 ~t~~~v~~~l~~~l~~~~~~~VLDiG~G~-G~~~~~la~-~~~~~~V~~vD~s~~~~~~a~~n~~~~~-~-~~v~~~~~d   98 (196)
T PRK07402         23 LTKREVRLLLISQLRLEPDSVLWDIGAGT-GTIPVEAGL-LCPKGRVIAIERDEEVVNLIRRNCDRFG-V-KNVEVIEGS   98 (196)
T ss_pred             CCHHHHHHHHHHhcCCCCCCEEEEeCCCC-CHHHHHHHH-HCCCCEEEEEeCCHHHHHHHHHHHHHhC-C-CCeEEEECc
Confidence            55555553  2333456789999999997 455666776 3678999999999999999999999998 4 579999999


Q ss_pred             ccchhhcC-CCcceeehhhhccCChhHHHHHHHHHHhhccCCcEEEEee
Q 042119          193 IMEVKEQL-GEYDCIFLAALVGMSKEEKLTILGHIRKYMKDGGILLVRS  240 (286)
Q Consensus       193 ~~~~~~~l-~~fD~V~~aalvg~~~~~k~~vl~~l~~~l~pgg~lv~r~  240 (286)
                      +.+....+ ..+|.+++...     .+..++++.+.+.|+|||.+++-.
T Consensus        99 ~~~~~~~~~~~~d~v~~~~~-----~~~~~~l~~~~~~LkpgG~li~~~  142 (196)
T PRK07402         99 APECLAQLAPAPDRVCIEGG-----RPIKEILQAVWQYLKPGGRLVATA  142 (196)
T ss_pred             hHHHHhhCCCCCCEEEEECC-----cCHHHHHHHHHHhcCCCeEEEEEe
Confidence            86643333 35788776532     344679999999999999998875

>KOG1270 consensus Methyltransferases [Coenzyme transport and metabolism]

Probab=99.39  E-value=5.3e-13  Score=120.85  Aligned_cols=102  Identities=21%  Similarity=0.355  Sum_probs=84.4

Q ss_pred             CCEEEEeccCCChhhHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCC----CeEEEEccccchhhcCCCccee
Q 042119          131 PKKVAFVGSGPMPLTSIIMAKHHLTSTHFDNFDIDEAANDVARSIVASDAEFEG----RMKFLTRDIMEVKEQLGEYDCI  206 (286)
Q Consensus       131 ~~~VL~IG~G~lp~tai~lA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~g~l~~----~i~f~~~D~~~~~~~l~~fD~V  206 (286)
                      +++||||||| +|+-++-||+   .|++|+|||.++++++.|++.....+.++.    +++|.+.|+.+..   +.||.|
T Consensus        90 g~~ilDvGCG-gGLLSepLAr---lga~V~GID~s~~~V~vA~~h~~~dP~~~~~~~y~l~~~~~~~E~~~---~~fDaV  162 (282)
T KOG1270|consen   90 GMKILDVGCG-GGLLSEPLAR---LGAQVTGIDASDDMVEVANEHKKMDPVLEGAIAYRLEYEDTDVEGLT---GKFDAV  162 (282)
T ss_pred             CceEEEeccC-ccccchhhHh---hCCeeEeecccHHHHHHHHHhhhcCchhccccceeeehhhcchhhcc---ccccee
Confidence            4889999999 6999999999   899999999999999999999666663444    4889999986543   359999


Q ss_pred             ehhhhccCChhHHHHHHHHHHhhccCCcEEEEee
Q 042119          207 FLAALVGMSKEEKLTILGHIRKYMKDGGILLVRS  240 (286)
Q Consensus       207 ~~aalvg~~~~~k~~vl~~l~~~l~pgg~lv~r~  240 (286)
                      ...-.+ .+-.++.++++.+.+++||||.+.+.+
T Consensus       163 vcsevl-eHV~dp~~~l~~l~~~lkP~G~lfitt  195 (282)
T KOG1270|consen  163 VCSEVL-EHVKDPQEFLNCLSALLKPNGRLFITT  195 (282)
T ss_pred             eeHHHH-HHHhCHHHHHHHHHHHhCCCCceEeee
Confidence            855333 234688999999999999999999976

>PF13659 Methyltransf_26: Methyltransferase domain; PDB: 3GJY_A 3LPM_B 2NP6_D 1AQI_B 2ADM_B 2IH2_A 2JG3_A 2IBS_D 2NP7_A 2IBT_A

Probab=99.39  E-value=1.8e-12  Score=102.99  Aligned_cols=106  Identities=20%  Similarity=0.314  Sum_probs=83.5

Q ss_pred             CCEEEEeccCCChhhHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEccccchhh--cCCCcceeeh
Q 042119          131 PKKVAFVGSGPMPLTSIIMAKHHLTSTHFDNFDIDEAANDVARSIVASDAEFEGRMKFLTRDIMEVKE--QLGEYDCIFL  208 (286)
Q Consensus       131 ~~~VL~IG~G~lp~tai~lA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~g~l~~~i~f~~~D~~~~~~--~l~~fD~V~~  208 (286)
                      |.+|||+|||. |..++.+++. . ..+++++|+||.+++.|++.+...+ +.++++++++|..+...  ....||+|+.
T Consensus         1 g~~vlD~~~G~-G~~~~~~~~~-~-~~~~~gvdi~~~~~~~a~~~~~~~~-~~~~~~~~~~D~~~~~~~~~~~~~D~Iv~   76 (117)
T PF13659_consen    1 GDRVLDPGCGS-GTFLLAALRR-G-AARVTGVDIDPEAVELARRNLPRNG-LDDRVEVIVGDARDLPEPLPDGKFDLIVT   76 (117)
T ss_dssp             TEEEEEETSTT-CHHHHHHHHH-C-TCEEEEEESSHHHHHHHHHHCHHCT-TTTTEEEEESHHHHHHHTCTTT-EEEEEE
T ss_pred             CCEEEEcCcch-HHHHHHHHHH-C-CCeEEEEEECHHHHHHHHHHHHHcc-CCceEEEEECchhhchhhccCceeEEEEE
Confidence            56999999995 7777777773 3 6999999999999999999999999 78899999999988773  3357999987


Q ss_pred             hhhccC---C----hhHHHHHHHHHHhhccCCcEEEEee
Q 042119          209 AALVGM---S----KEEKLTILGHIRKYMKDGGILLVRS  240 (286)
Q Consensus       209 aalvg~---~----~~~k~~vl~~l~~~l~pgg~lv~r~  240 (286)
                      .---+.   .    ......+++++.+.|+|||.+++-.
T Consensus        77 npP~~~~~~~~~~~~~~~~~~~~~~~~~L~~gG~~~~~~  115 (117)
T PF13659_consen   77 NPPYGPRSGDKAALRRLYSRFLEAAARLLKPGGVLVFIT  115 (117)
T ss_dssp             --STTSBTT----GGCHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred             CCCCccccccchhhHHHHHHHHHHHHHHcCCCeEEEEEe
Confidence            642211   0    1134688999999999999998753

...

>KOG1540 consensus Ubiquinone biosynthesis methyltransferase COQ5 [Coenzyme transport and metabolism]

Probab=99.38  E-value=3.7e-12  Score=114.98  Aligned_cols=111  Identities=15%  Similarity=0.190  Sum_probs=92.7

Q ss_pred             hcCCCCCCEEEEeccCCChhhHHHHHhhcCCC------cEEEEEeCChHHHHHHHHHHHhcCCCCCC--eEEEEccccch
Q 042119          125 ENGVVQPKKVAFVGSGPMPLTSIIMAKHHLTS------THFDNFDIDEAANDVARSIVASDAEFEGR--MKFLTRDIMEV  196 (286)
Q Consensus       125 ~~~~~~~~~VL~IG~G~lp~tai~lA~~~~~g------~~V~~iDid~~ai~~Ar~~~~~~g~l~~~--i~f~~~D~~~~  196 (286)
                      +.++.++.++||++||+ |..|..+-+. .+.      .+|+..||+|++++.+++...+.+ +.++  +.|+++|+.++
T Consensus        95 ~L~p~~~m~~lDvaGGT-GDiaFril~~-v~s~~~~~~~~V~v~Dinp~mL~vgkqRa~~~~-l~~~~~~~w~~~dAE~L  171 (296)
T KOG1540|consen   95 KLGPGKGMKVLDVAGGT-GDIAFRILRH-VKSQFGDRESKVTVLDINPHMLAVGKQRAKKRP-LKASSRVEWVEGDAEDL  171 (296)
T ss_pred             ccCCCCCCeEEEecCCc-chhHHHHHHh-hccccCCCCceEEEEeCCHHHHHHHHHHHhhcC-CCcCCceEEEeCCcccC
Confidence            44678889999999996 7888888773 444      899999999999999999998877 5555  99999999999


Q ss_pred             hhcCCCcceeehhhhc-cCChhHHHHHHHHHHhhccCCcEEEEee
Q 042119          197 KEQLGEYDCIFLAALV-GMSKEEKLTILGHIRKYMKDGGILLVRS  240 (286)
Q Consensus       197 ~~~l~~fD~V~~aalv-g~~~~~k~~vl~~l~~~l~pgg~lv~r~  240 (286)
                      +++...||..-++.-+ -+  .+..+++++.+|+|||||++.+-.
T Consensus       172 pFdd~s~D~yTiafGIRN~--th~~k~l~EAYRVLKpGGrf~cLe  214 (296)
T KOG1540|consen  172 PFDDDSFDAYTIAFGIRNV--THIQKALREAYRVLKPGGRFSCLE  214 (296)
T ss_pred             CCCCCcceeEEEecceecC--CCHHHHHHHHHHhcCCCcEEEEEE
Confidence            9998899998776655 22  355679999999999999988653

>PRK06922 hypothetical protein; Provisional

Probab=99.38  E-value=7.1e-12  Score=126.58  Aligned_cols=107  Identities=15%  Similarity=0.246  Sum_probs=86.1

Q ss_pred             CCCCEEEEeccCCChhhHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEccccchh--hcCCCccee
Q 042119          129 VQPKKVAFVGSGPMPLTSIIMAKHHLTSTHFDNFDIDEAANDVARSIVASDAEFEGRMKFLTRDIMEVK--EQLGEYDCI  206 (286)
Q Consensus       129 ~~~~~VL~IG~G~lp~tai~lA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~g~l~~~i~f~~~D~~~~~--~~l~~fD~V  206 (286)
                      .++.+|||||||+ |..+..+|+ ..++.+|+|+|+|+.|++.|++.....+   .+++++++|+.+++  .+.+.||+|
T Consensus       417 ~~g~rVLDIGCGT-G~ls~~LA~-~~P~~kVtGIDIS~~MLe~Ararl~~~g---~~ie~I~gDa~dLp~~fedeSFDvV  491 (677)
T PRK06922        417 IKGDTIVDVGAGG-GVMLDMIEE-ETEDKRIYGIDISENVIDTLKKKKQNEG---RSWNVIKGDAINLSSSFEKESVDTI  491 (677)
T ss_pred             cCCCEEEEeCCCC-CHHHHHHHH-hCCCCEEEEEECCHHHHHHHHHHhhhcC---CCeEEEEcchHhCccccCCCCEEEE
Confidence            4688999999997 566677776 4789999999999999999999876555   47899999998765  334579999


Q ss_pred             ehhhhcc------------CChhHHHHHHHHHHhhccCCcEEEEee
Q 042119          207 FLAALVG------------MSKEEKLTILGHIRKYMKDGGILLVRS  240 (286)
Q Consensus       207 ~~aalvg------------~~~~~k~~vl~~l~~~l~pgg~lv~r~  240 (286)
                      +.....+            ++.++..++++++.+.|||||.+++.+
T Consensus       492 Vsn~vLH~L~syIp~~g~~f~~edl~kiLreI~RVLKPGGrLII~D  537 (677)
T PRK06922        492 VYSSILHELFSYIEYEGKKFNHEVIKKGLQSAYEVLKPGGRIIIRD  537 (677)
T ss_pred             EEchHHHhhhhhcccccccccHHHHHHHHHHHHHHcCCCcEEEEEe
Confidence            8654321            123567899999999999999999976

>PRK13256 thiopurine S-methyltransferase; Reviewed

Probab=99.37  E-value=7.6e-12  Score=112.40  Aligned_cols=137  Identities=8%  Similarity=0.043  Sum_probs=102.9

Q ss_pred             HHHHhcCCCCcccccccCcCccchhhhhHHHHHHHHhcCCCCCCEEEEeccCCChhhHHHHHhhcCCCcEEEEEeCChHH
Q 042119           89 FATFLTKIPQPLNNLSLFPYYGNYVKLSKLEYTILSENGVVQPKKVAFVGSGPMPLTSIIMAKHHLTSTHFDNFDIDEAA  168 (286)
Q Consensus        89 ~A~~l~~~~~p~~~L~~fpy~~ny~~l~~~E~~~l~~~~~~~~~~VL~IG~G~lp~tai~lA~~~~~g~~V~~iDid~~a  168 (286)
                      |-++-.+++.+|+.-...|++..|.       .   +....++.|||+.||| -|..+++||+   .|.+|+|+|+|+.|
T Consensus        12 W~~rw~~~~~~f~~~~pnp~L~~~~-------~---~l~~~~~~rvLvPgCG-kg~D~~~LA~---~G~~V~GvDlS~~A   77 (226)
T PRK13256         12 WLDRWQNDDVGFCQESPNEFLVKHF-------S---KLNINDSSVCLIPMCG-CSIDMLFFLS---KGVKVIGIELSEKA   77 (226)
T ss_pred             HHHHHhcCCCCCccCCCCHHHHHHH-------H---hcCCCCCCeEEEeCCC-ChHHHHHHHh---CCCcEEEEecCHHH
Confidence            3333444577888777778754442       1   1123457899999999 5999999998   89999999999999


Q ss_pred             HHHHHHHH-------H----hcCCCCCCeEEEEccccchhh---cCCCcceeehh-hhccCChhHHHHHHHHHHhhccCC
Q 042119          169 NDVARSIV-------A----SDAEFEGRMKFLTRDIMEVKE---QLGEYDCIFLA-ALVGMSKEEKLTILGHIRKYMKDG  233 (286)
Q Consensus       169 i~~Ar~~~-------~----~~g~l~~~i~f~~~D~~~~~~---~l~~fD~V~~a-alvg~~~~~k~~vl~~l~~~l~pg  233 (286)
                      ++.+.+-.       +    +.- -+.+|++.++|..+++.   ..+.||.||.. +++..+.+.+.+..+++.+.|+||
T Consensus        78 i~~~~~e~~~~~~~~~~~~~~~~-~~~~i~~~~gD~f~l~~~~~~~~~fD~VyDra~~~Alpp~~R~~Y~~~l~~lL~pg  156 (226)
T PRK13256         78 VLSFFSQNTINYEVIHGNDYKLY-KGDDIEIYVADIFNLPKIANNLPVFDIWYDRGAYIALPNDLRTNYAKMMLEVCSNN  156 (226)
T ss_pred             HHHHHHHcCCCcceeccccccee-ccCceEEEEccCcCCCccccccCCcCeeeeehhHhcCCHHHHHHHHHHHHHHhCCC
Confidence            99986621       0    000 12589999999988753   23579999964 456778899999999999999999


Q ss_pred             cEEEEee
Q 042119          234 GILLVRS  240 (286)
Q Consensus       234 g~lv~r~  240 (286)
                      |.+++-+
T Consensus       157 g~llll~  163 (226)
T PRK13256        157 TQILLLV  163 (226)
T ss_pred             cEEEEEE
Confidence            9877754

>COG4106 Tam Trans-aconitate methyltransferase [General function prediction only]

Probab=99.37  E-value=1.8e-12  Score=114.60  Aligned_cols=112  Identities=19%  Similarity=0.275  Sum_probs=91.0

Q ss_pred             HHHHHHHHhcCCCCCCEEEEeccCCChhhHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEccccch
Q 042119          117 KLEYTILSENGVVQPKKVAFVGSGPMPLTSIIMAKHHLTSTHFDNFDIDEAANDVARSIVASDAEFEGRMKFLTRDIMEV  196 (286)
Q Consensus       117 ~~E~~~l~~~~~~~~~~VL~IG~G~lp~tai~lA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~g~l~~~i~f~~~D~~~~  196 (286)
                      +.-.+++.+.....+.+|.|+|||| |-++..|++ ..|+++|+|||-|++|++.|++.   +    .+.+|..+|+.+.
T Consensus        17 RPa~dLla~Vp~~~~~~v~DLGCGp-GnsTelL~~-RwP~A~i~GiDsS~~Mla~Aa~r---l----p~~~f~~aDl~~w   87 (257)
T COG4106          17 RPARDLLARVPLERPRRVVDLGCGP-GNSTELLAR-RWPDAVITGIDSSPAMLAKAAQR---L----PDATFEEADLRTW   87 (257)
T ss_pred             CcHHHHHhhCCccccceeeecCCCC-CHHHHHHHH-hCCCCeEeeccCCHHHHHHHHHh---C----CCCceecccHhhc
Confidence            3345677777889999999999998 566677777 48999999999999999999775   3    3689999999876


Q ss_pred             hhcCCCcceeehhhhccCChhHHHHHHHHHHhhccCCcEEEEe
Q 042119          197 KEQLGEYDCIFLAALVGMSKEEKLTILGHIRKYMKDGGILLVR  239 (286)
Q Consensus       197 ~~~l~~fD~V~~aalvg~~~~~k~~vl~~l~~~l~pgg~lv~r  239 (286)
                      ..+ ..+|++|..+...|- ++-.++|.++...|+|||+|.+.
T Consensus        88 ~p~-~~~dllfaNAvlqWl-pdH~~ll~rL~~~L~Pgg~LAVQ  128 (257)
T COG4106          88 KPE-QPTDLLFANAVLQWL-PDHPELLPRLVSQLAPGGVLAVQ  128 (257)
T ss_pred             CCC-Cccchhhhhhhhhhc-cccHHHHHHHHHhhCCCceEEEE
Confidence            543 479999977655553 45557999999999999999994

>PRK01683 trans-aconitate 2-methyltransferase; Provisional

Probab=99.37  E-value=5.3e-12  Score=114.37  Aligned_cols=107  Identities=21%  Similarity=0.326  Sum_probs=84.0

Q ss_pred             HHhcCCCCCCEEEEeccCCChhhHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEccccchhhcCCC
Q 042119          123 LSENGVVQPKKVAFVGSGPMPLTSIIMAKHHLTSTHFDNFDIDEAANDVARSIVASDAEFEGRMKFLTRDIMEVKEQLGE  202 (286)
Q Consensus       123 l~~~~~~~~~~VL~IG~G~lp~tai~lA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~g~l~~~i~f~~~D~~~~~~~l~~  202 (286)
                      +......++.+|||||||+ |..+..+++ ..++++|+|+|+|+++++.|++..       .+++|+.+|+.+... ...
T Consensus        24 l~~~~~~~~~~vLDiGcG~-G~~~~~la~-~~~~~~v~gvD~s~~~i~~a~~~~-------~~~~~~~~d~~~~~~-~~~   93 (258)
T PRK01683         24 LARVPLENPRYVVDLGCGP-GNSTELLVE-RWPAARITGIDSSPAMLAEARSRL-------PDCQFVEADIASWQP-PQA   93 (258)
T ss_pred             HhhCCCcCCCEEEEEcccC-CHHHHHHHH-HCCCCEEEEEECCHHHHHHHHHhC-------CCCeEEECchhccCC-CCC
Confidence            3344557789999999997 555677777 368899999999999999999862       358999999876543 348


Q ss_pred             cceeehhhhccCChhHHHHHHHHHHhhccCCcEEEEee
Q 042119          203 YDCIFLAALVGMSKEEKLTILGHIRKYMKDGGILLVRS  240 (286)
Q Consensus       203 fD~V~~aalvg~~~~~k~~vl~~l~~~l~pgg~lv~r~  240 (286)
                      ||+|+......+ ..++.++++++.+.|+|||.+++..
T Consensus        94 fD~v~~~~~l~~-~~d~~~~l~~~~~~LkpgG~~~~~~  130 (258)
T PRK01683         94 LDLIFANASLQW-LPDHLELFPRLVSLLAPGGVLAVQM  130 (258)
T ss_pred             ccEEEEccChhh-CCCHHHHHHHHHHhcCCCcEEEEEC
Confidence            999987655433 2466789999999999999998854

>PRK10258 biotin biosynthesis protein BioC; Provisional

Probab=99.36  E-value=5.3e-12  Score=114.04  Aligned_cols=100  Identities=18%  Similarity=0.215  Sum_probs=79.6

Q ss_pred             CCCCEEEEeccCCChhhHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEccccchhhcCCCcceeeh
Q 042119          129 VQPKKVAFVGSGPMPLTSIIMAKHHLTSTHFDNFDIDEAANDVARSIVASDAEFEGRMKFLTRDIMEVKEQLGEYDCIFL  208 (286)
Q Consensus       129 ~~~~~VL~IG~G~lp~tai~lA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~g~l~~~i~f~~~D~~~~~~~l~~fD~V~~  208 (286)
                      .++.+|||+|||++ ..+..+++   .+.+|+++|+|+++++.|++...       ...|+++|+.+++...+.||+|+.
T Consensus        41 ~~~~~vLDiGcG~G-~~~~~l~~---~~~~v~~~D~s~~~l~~a~~~~~-------~~~~~~~d~~~~~~~~~~fD~V~s  109 (251)
T PRK10258         41 RKFTHVLDAGCGPG-WMSRYWRE---RGSQVTALDLSPPMLAQARQKDA-------ADHYLAGDIESLPLATATFDLAWS  109 (251)
T ss_pred             cCCCeEEEeeCCCC-HHHHHHHH---cCCeEEEEECCHHHHHHHHhhCC-------CCCEEEcCcccCcCCCCcEEEEEE
Confidence            46789999999985 45566776   68999999999999999988621       357899999887665567999996


Q ss_pred             hhhccCChhHHHHHHHHHHhhccCCcEEEEee
Q 042119          209 AALVGMSKEEKLTILGHIRKYMKDGGILLVRS  240 (286)
Q Consensus       209 aalvg~~~~~k~~vl~~l~~~l~pgg~lv~r~  240 (286)
                      ...+.+. .+...++.++.+.|+|||.+++..
T Consensus       110 ~~~l~~~-~d~~~~l~~~~~~Lk~gG~l~~~~  140 (251)
T PRK10258        110 NLAVQWC-GNLSTALRELYRVVRPGGVVAFTT  140 (251)
T ss_pred             Cchhhhc-CCHHHHHHHHHHHcCCCeEEEEEe
Confidence            5444332 456689999999999999999875

>TIGR01934 MenG_MenH_UbiE ubiquinone/menaquinone biosynthesis methyltransferases

Probab=99.36  E-value=1.1e-11  Score=108.57  Aligned_cols=106  Identities=19%  Similarity=0.213  Sum_probs=83.3

Q ss_pred             CCCCCEEEEeccCCChhhHHHHHhhcCCC-cEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEccccchhhcCCCccee
Q 042119          128 VVQPKKVAFVGSGPMPLTSIIMAKHHLTS-THFDNFDIDEAANDVARSIVASDAEFEGRMKFLTRDIMEVKEQLGEYDCI  206 (286)
Q Consensus       128 ~~~~~~VL~IG~G~lp~tai~lA~~~~~g-~~V~~iDid~~ai~~Ar~~~~~~g~l~~~i~f~~~D~~~~~~~l~~fD~V  206 (286)
                      ..++.+||++|||++ ..+..+++. .+. .+++++|+++++++.+++... .   ..+++++++|+.+.+...+.||+|
T Consensus        37 ~~~~~~vldiG~G~G-~~~~~~~~~-~~~~~~~~~iD~~~~~~~~~~~~~~-~---~~~i~~~~~d~~~~~~~~~~~D~i  110 (223)
T TIGR01934        37 VFKGQKVLDVACGTG-DLAIELAKS-APDRGKVTGVDFSSEMLEVAKKKSE-L---PLNIEFIQADAEALPFEDNSFDAV  110 (223)
T ss_pred             cCCCCeEEEeCCCCC-hhHHHHHHh-cCCCceEEEEECCHHHHHHHHHHhc-c---CCCceEEecchhcCCCCCCcEEEE
Confidence            357899999999974 555666663 443 699999999999999999865 2   368999999998876554579999


Q ss_pred             ehhhhccCChhHHHHHHHHHHhhccCCcEEEEee
Q 042119          207 FLAALVGMSKEEKLTILGHIRKYMKDGGILLVRS  240 (286)
Q Consensus       207 ~~aalvg~~~~~k~~vl~~l~~~l~pgg~lv~r~  240 (286)
                      +...... +..+...+++.+.+.|+|||.+++.+
T Consensus       111 ~~~~~~~-~~~~~~~~l~~~~~~L~~gG~l~~~~  143 (223)
T TIGR01934       111 TIAFGLR-NVTDIQKALREMYRVLKPGGRLVILE  143 (223)
T ss_pred             EEeeeeC-CcccHHHHHHHHHHHcCCCcEEEEEE
Confidence            8654332 33566789999999999999998864

Note that a number of non-orthologous genes which are members of pfam03737 have been erroneously annotated as MenG methyltransferases.

>TIGR00091 tRNA (guanine-N(7)-)-methyltransferase

Probab=99.35  E-value=6.5e-12  Score=109.84  Aligned_cols=108  Identities=19%  Similarity=0.205  Sum_probs=85.0

Q ss_pred             CCCCEEEEeccCCChhhHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEccccchhhc---CCCcce
Q 042119          129 VQPKKVAFVGSGPMPLTSIIMAKHHLTSTHFDNFDIDEAANDVARSIVASDAEFEGRMKFLTRDIMEVKEQ---LGEYDC  205 (286)
Q Consensus       129 ~~~~~VL~IG~G~lp~tai~lA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~g~l~~~i~f~~~D~~~~~~~---l~~fD~  205 (286)
                      ..+.+|||||||+ |..+..+|+ ..|+++|+|+|+++++++.|++.+...| + .+++++++|+.+++..   .+.+|.
T Consensus        15 ~~~~~ilDiGcG~-G~~~~~la~-~~p~~~v~gvD~~~~~l~~a~~~~~~~~-l-~ni~~i~~d~~~~~~~~~~~~~~d~   90 (194)
T TIGR00091        15 NKAPLHLEIGCGK-GRFLIDMAK-QNPDKNFLGIEIHTPIVLAANNKANKLG-L-KNLHVLCGDANELLDKFFPDGSLSK   90 (194)
T ss_pred             CCCceEEEeCCCc-cHHHHHHHH-hCCCCCEEEEEeeHHHHHHHHHHHHHhC-C-CCEEEEccCHHHHHHhhCCCCceeE
Confidence            3567999999996 666777887 4789999999999999999999999988 4 5899999999876532   236999


Q ss_pred             eehhhhccCChhH-------HHHHHHHHHhhccCCcEEEEee
Q 042119          206 IFLAALVGMSKEE-------KLTILGHIRKYMKDGGILLVRS  240 (286)
Q Consensus       206 V~~aalvg~~~~~-------k~~vl~~l~~~l~pgg~lv~r~  240 (286)
                      |++..-..++...       ..++++.+++.|||||.+.+.+
T Consensus        91 v~~~~pdpw~k~~h~~~r~~~~~~l~~~~r~LkpgG~l~~~t  132 (194)
T TIGR00091        91 VFLNFPDPWPKKRHNKRRITQPHFLKEYANVLKKGGVIHFKT  132 (194)
T ss_pred             EEEECCCcCCCCCccccccCCHHHHHHHHHHhCCCCEEEEEe
Confidence            8865322222111       1469999999999999999876

In E. coli, this protein flanks the DNA repair protein MutY, also called micA.

>TIGR02021 BchM-ChlM magnesium protoporphyrin O-methyltransferase

Probab=99.34  E-value=2.6e-11  Score=107.52  Aligned_cols=104  Identities=24%  Similarity=0.372  Sum_probs=84.3

Q ss_pred             CCCCCEEEEeccCCChhhHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEccccchhhcCCCcceee
Q 042119          128 VVQPKKVAFVGSGPMPLTSIIMAKHHLTSTHFDNFDIDEAANDVARSIVASDAEFEGRMKFLTRDIMEVKEQLGEYDCIF  207 (286)
Q Consensus       128 ~~~~~~VL~IG~G~lp~tai~lA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~g~l~~~i~f~~~D~~~~~~~l~~fD~V~  207 (286)
                      ..++.+|||||||+ |..+..+++   .+.+|+|+|+|+++++.|++.+...+ ..++++|.++|+.+.+   +.||+|+
T Consensus        53 ~~~~~~vLDiGcG~-G~~~~~la~---~~~~v~gvD~s~~~i~~a~~~~~~~~-~~~~i~~~~~d~~~~~---~~fD~ii  124 (219)
T TIGR02021        53 PLKGKRVLDAGCGT-GLLSIELAK---RGAIVKAVDISEQMVQMARNRAQGRD-VAGNVEFEVNDLLSLC---GEFDIVV  124 (219)
T ss_pred             CCCCCEEEEEeCCC-CHHHHHHHH---CCCEEEEEECCHHHHHHHHHHHHhcC-CCCceEEEECChhhCC---CCcCEEE
Confidence            35689999999996 666677777   57899999999999999999988777 5568999999987654   6899998


Q ss_pred             hhhhc-cCChhHHHHHHHHHHhhccCCcEEEEe
Q 042119          208 LAALV-GMSKEEKLTILGHIRKYMKDGGILLVR  239 (286)
Q Consensus       208 ~aalv-g~~~~~k~~vl~~l~~~l~pgg~lv~r  239 (286)
                      ....+ .++.++...++.++.+.+++|+++.+.
T Consensus       125 ~~~~l~~~~~~~~~~~l~~i~~~~~~~~~i~~~  157 (219)
T TIGR02021       125 CMDVLIHYPASDMAKALGHLASLTKERVIFTFA  157 (219)
T ss_pred             EhhHHHhCCHHHHHHHHHHHHHHhCCCEEEEEC
Confidence            65444 445566778999999999888777664

This model represents the S-adenosylmethionine-dependent O-methyltransferase responsible for methylation of magnesium protoporphyrin IX. This step is essentiasl for the biosynthesis of both chlorophyll and bacteriochlorophyll. This model encompasses two closely related clades, from cyanobacteria (and plants) where it is called ChlM and other photosynthetic bacteria where it is known as BchM.

>PRK08317 hypothetical protein; Provisional

Probab=99.34  E-value=1.5e-11  Score=108.37  Aligned_cols=111  Identities=20%  Similarity=0.213  Sum_probs=87.5

Q ss_pred             hcCCCCCCEEEEeccCCChhhHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEccccchhhcCCCcc
Q 042119          125 ENGVVQPKKVAFVGSGPMPLTSIIMAKHHLTSTHFDNFDIDEAANDVARSIVASDAEFEGRMKFLTRDIMEVKEQLGEYD  204 (286)
Q Consensus       125 ~~~~~~~~~VL~IG~G~lp~tai~lA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~g~l~~~i~f~~~D~~~~~~~l~~fD  204 (286)
                      .....++.+||++|||+ |..+..+++...++++++++|+++.+++.|++.....   ..+++|.++|+.+.+...+.||
T Consensus        14 ~~~~~~~~~vLdiG~G~-G~~~~~~a~~~~~~~~v~~~d~~~~~~~~a~~~~~~~---~~~~~~~~~d~~~~~~~~~~~D   89 (241)
T PRK08317         14 LLAVQPGDRVLDVGCGP-GNDARELARRVGPEGRVVGIDRSEAMLALAKERAAGL---GPNVEFVRGDADGLPFPDGSFD   89 (241)
T ss_pred             HcCCCCCCEEEEeCCCC-CHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHhhCC---CCceEEEecccccCCCCCCCce
Confidence            34567889999999997 5666777773336789999999999999999983332   3689999999977665556899


Q ss_pred             eeehhhhccCChhHHHHHHHHHHhhccCCcEEEEee
Q 042119          205 CIFLAALVGMSKEEKLTILGHIRKYMKDGGILLVRS  240 (286)
Q Consensus       205 ~V~~aalvg~~~~~k~~vl~~l~~~l~pgg~lv~r~  240 (286)
                      +|+...... +..+...+++++.+.|+|||.+++..
T Consensus        90 ~v~~~~~~~-~~~~~~~~l~~~~~~L~~gG~l~~~~  124 (241)
T PRK08317         90 AVRSDRVLQ-HLEDPARALAEIARVLRPGGRVVVLD  124 (241)
T ss_pred             EEEEechhh-ccCCHHHHHHHHHHHhcCCcEEEEEe
Confidence            998764432 23467789999999999999998865

>PF08242 Methyltransf_12: Methyltransferase domain; InterPro: IPR013217 Methyl transfer from the ubiquitous donor S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals

Probab=99.34  E-value=4.6e-13  Score=103.85  Aligned_cols=97  Identities=21%  Similarity=0.342  Sum_probs=62.1

Q ss_pred             EEeccCCChhhHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEccccchhhcC--CCcceeehhhhc
Q 042119          135 AFVGSGPMPLTSIIMAKHHLTSTHFDNFDIDEAANDVARSIVASDAEFEGRMKFLTRDIMEVKEQL--GEYDCIFLAALV  212 (286)
Q Consensus       135 L~IG~G~lp~tai~lA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~g~l~~~i~f~~~D~~~~~~~l--~~fD~V~~aalv  212 (286)
                      ||||||++-++...+++  +++.+++++|+|+.+++.|++.+...+.  ...+....+..+.....  +.||+|+....+
T Consensus         1 LdiGcG~G~~~~~l~~~--~~~~~~~~~D~s~~~l~~a~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~fD~V~~~~vl   76 (99)
T PF08242_consen    1 LDIGCGTGRLLRALLEE--LPDARYTGVDISPSMLERARERLAELGN--DNFERLRFDVLDLFDYDPPESFDLVVASNVL   76 (99)
T ss_dssp             -EESTTTS-TTTTHHHH--C-EEEEEEEESSSSTTSTTCCCHHHCT-----EEEEE--SSS---CCC----SEEEEE-TT
T ss_pred             CEeCccChHHHHHHHHh--CCCCEEEEEECCHHHHHHHHHHhhhcCC--cceeEEEeecCChhhcccccccceehhhhhH
Confidence            79999986665555544  6999999999999999999999988773  44555555554443322  389999976554


Q ss_pred             cCChhHHHHHHHHHHhhccCCcEE
Q 042119          213 GMSKEEKLTILGHIRKYMKDGGIL  236 (286)
Q Consensus       213 g~~~~~k~~vl~~l~~~l~pgg~l  236 (286)
                      ++- +++..+++++.+.|+|||.|
T Consensus        77 ~~l-~~~~~~l~~~~~~L~pgG~l   99 (99)
T PF08242_consen   77 HHL-EDIEAVLRNIYRLLKPGGIL   99 (99)
T ss_dssp             S---S-HHHHHHHHTTT-TSS-EE
T ss_pred             hhh-hhHHHHHHHHHHHcCCCCCC
Confidence            433 78889999999999999986

The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] Fatty acid synthase (2.3.1.85 from EC), a biosynthetic enzyme catalysing the formation of long-chain fatty acids Glycine N-methyltransferase (2.1.1.20 from EC) which catalyses the SAM-dependent methylation of glycine to form sarcosine and may play a role in regulating the methylation potential of the cell [] Enniatin synthetase, involved in non-ribosomal biosynthesis of cyclohexadepsipeptidase, enniatin [] Histamine N-methyltransferase (2.1.1.8 from EC), a SAM-dependent histamine-inactivating enzyme [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ].; PDB: 2VZ8_A 2VZ9_A.

>PRK04266 fibrillarin; Provisional

Probab=99.33  E-value=3.3e-11  Score=108.31  Aligned_cols=148  Identities=14%  Similarity=0.170  Sum_probs=96.6

Q ss_pred             hcCCCCCCEEEEeccCCChhhHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEccccchh--hc-CC
Q 042119          125 ENGVVQPKKVAFVGSGPMPLTSIIMAKHHLTSTHFDNFDIDEAANDVARSIVASDAEFEGRMKFLTRDIMEVK--EQ-LG  201 (286)
Q Consensus       125 ~~~~~~~~~VL~IG~G~lp~tai~lA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~g~l~~~i~f~~~D~~~~~--~~-l~  201 (286)
                      ...+.++.+|||+|||+ |..+..+|+. .++.+|+++|++++|++..++.+++.    .++.++.+|+.+..  .+ .+
T Consensus        67 ~l~i~~g~~VlD~G~G~-G~~~~~la~~-v~~g~V~avD~~~~ml~~l~~~a~~~----~nv~~i~~D~~~~~~~~~l~~  140 (226)
T PRK04266         67 NFPIKKGSKVLYLGAAS-GTTVSHVSDI-VEEGVVYAVEFAPRPMRELLEVAEER----KNIIPILADARKPERYAHVVE  140 (226)
T ss_pred             hCCCCCCCEEEEEccCC-CHHHHHHHHh-cCCCeEEEEECCHHHHHHHHHHhhhc----CCcEEEECCCCCcchhhhccc
Confidence            35678999999999997 4556777773 44679999999999999888776643    46899999986521  11 24


Q ss_pred             CcceeehhhhccCChhHHHHHHHHHHhhccCCcEEEEeecC-cc--e---eeecccCCcccc--cCcEEEEEecCcccc-
Q 042119          202 EYDCIFLAALVGMSKEEKLTILGHIRKYMKDGGILLVRSAK-GA--R---AFLYPVVVEHDL--LDFEVLSAVHPNDDV-  272 (286)
Q Consensus       202 ~fD~V~~aalvg~~~~~k~~vl~~l~~~l~pgg~lv~r~~~-g~--r---~~lyp~v~~~~l--~gf~~~~~~~P~~~v-  272 (286)
                      .||+||...-   +..+...+++++.+.|||||.+++.-.+ ..  +   ...|... ...+  .||+...+....+-. 
T Consensus       141 ~~D~i~~d~~---~p~~~~~~L~~~~r~LKpGG~lvI~v~~~~~d~~~~~~~~~~~~-~~~l~~aGF~~i~~~~l~p~~~  216 (226)
T PRK04266        141 KVDVIYQDVA---QPNQAEIAIDNAEFFLKDGGYLLLAIKARSIDVTKDPKEIFKEE-IRKLEEGGFEILEVVDLEPYHK  216 (226)
T ss_pred             cCCEEEECCC---ChhHHHHHHHHHHHhcCCCcEEEEEEecccccCcCCHHHHHHHH-HHHHHHcCCeEEEEEcCCCCcC
Confidence            6999984321   1223345789999999999999984211 00  0   0111100 1122  499998777654332 


Q ss_pred             eeeeEEEeec
Q 042119          273 INSVVLVRNS  282 (286)
Q Consensus       273 insvi~~r~~  282 (286)
                      .+-.+++|++
T Consensus       217 ~h~~~v~~~~  226 (226)
T PRK04266        217 DHAAVVARKK  226 (226)
T ss_pred             CeEEEEEEcC
Confidence            3346666653

>TIGR02072 BioC biotin biosynthesis protein BioC

Probab=99.33  E-value=1.8e-11  Score=108.17  Aligned_cols=103  Identities=17%  Similarity=0.287  Sum_probs=82.6

Q ss_pred             CCCCEEEEeccCCChhhHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEccccchhhcCCCcceeeh
Q 042119          129 VQPKKVAFVGSGPMPLTSIIMAKHHLTSTHFDNFDIDEAANDVARSIVASDAEFEGRMKFLTRDIMEVKEQLGEYDCIFL  208 (286)
Q Consensus       129 ~~~~~VL~IG~G~lp~tai~lA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~g~l~~~i~f~~~D~~~~~~~l~~fD~V~~  208 (286)
                      ..+.+|||||||++ ..+..+++ ..+..+|+++|+++++++.+++..   +   ++++++++|+.+.+...+.||+|+.
T Consensus        33 ~~~~~vLDlG~G~G-~~~~~l~~-~~~~~~~~~~D~~~~~~~~~~~~~---~---~~~~~~~~d~~~~~~~~~~fD~vi~  104 (240)
T TIGR02072        33 FIPASVLDIGCGTG-YLTRALLK-RFPQAEFIALDISAGMLAQAKTKL---S---ENVQFICGDAEKLPLEDSSFDLIVS  104 (240)
T ss_pred             CCCCeEEEECCCcc-HHHHHHHH-hCCCCcEEEEeChHHHHHHHHHhc---C---CCCeEEecchhhCCCCCCceeEEEE
Confidence            45689999999975 45566776 467889999999999999998863   2   4789999999887655567999997


Q ss_pred             hhhccCChhHHHHHHHHHHhhccCCcEEEEee
Q 042119          209 AALVGMSKEEKLTILGHIRKYMKDGGILLVRS  240 (286)
Q Consensus       209 aalvg~~~~~k~~vl~~l~~~l~pgg~lv~r~  240 (286)
                      .....+ ..+..+++.++.+.|+|||.+++..
T Consensus       105 ~~~l~~-~~~~~~~l~~~~~~L~~~G~l~~~~  135 (240)
T TIGR02072       105 NLALQW-CDDLSQALSELARVLKPGGLLAFST  135 (240)
T ss_pred             hhhhhh-ccCHHHHHHHHHHHcCCCcEEEEEe
Confidence            654433 2466789999999999999999875

This enzyme, which is found in biotin biosynthetic gene clusters in proteobacteria, firmicutes, green-sulfur bacteria, fusobacterium and bacteroides, is believed to carry out an enzymatic step prior to the formation of pimeloyl-CoA (although attribution of this annotation is not traceable). The enzyme appears related to methyltransferases by homology.

>PF05175 MTS: Methyltransferase small domain; InterPro: IPR007848 This domain is found in ribosomal RNA small subunit methyltransferase C and in other methyltransferases

Probab=99.32  E-value=1.2e-11  Score=105.91  Aligned_cols=105  Identities=22%  Similarity=0.362  Sum_probs=82.1

Q ss_pred             CCCEEEEeccCCChhhHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEccccchhhcCCCcceeehh
Q 042119          130 QPKKVAFVGSGPMPLTSIIMAKHHLTSTHFDNFDIDEAANDVARSIVASDAEFEGRMKFLTRDIMEVKEQLGEYDCIFLA  209 (286)
Q Consensus       130 ~~~~VL~IG~G~lp~tai~lA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~g~l~~~i~f~~~D~~~~~~~l~~fD~V~~a  209 (286)
                      ++.+|||+|||. |.-++.+++ ..+..+|+++|+++.|++.|++.++..+ +.+ ++++.+|..+... ...||+|+..
T Consensus        31 ~~~~vLDlG~G~-G~i~~~la~-~~~~~~v~~vDi~~~a~~~a~~n~~~n~-~~~-v~~~~~d~~~~~~-~~~fD~Iv~N  105 (170)
T PF05175_consen   31 KGGRVLDLGCGS-GVISLALAK-RGPDAKVTAVDINPDALELAKRNAERNG-LEN-VEVVQSDLFEALP-DGKFDLIVSN  105 (170)
T ss_dssp             TTCEEEEETSTT-SHHHHHHHH-TSTCEEEEEEESBHHHHHHHHHHHHHTT-CTT-EEEEESSTTTTCC-TTCEEEEEE-
T ss_pred             cCCeEEEecCCh-HHHHHHHHH-hCCCCEEEEEcCCHHHHHHHHHHHHhcC-ccc-ccccccccccccc-ccceeEEEEc
Confidence            678999999997 566677777 5788889999999999999999999999 555 9999999866433 3589999865


Q ss_pred             hhc--cC--ChhHHHHHHHHHHhhccCCcEEEEe
Q 042119          210 ALV--GM--SKEEKLTILGHIRKYMKDGGILLVR  239 (286)
Q Consensus       210 alv--g~--~~~~k~~vl~~l~~~l~pgg~lv~r  239 (286)
                      --.  +.  ......+++++..++|+|||.+.+-
T Consensus       106 PP~~~~~~~~~~~~~~~i~~a~~~Lk~~G~l~lv  139 (170)
T PF05175_consen  106 PPFHAGGDDGLDLLRDFIEQARRYLKPGGRLFLV  139 (170)
T ss_dssp             --SBTTSHCHHHHHHHHHHHHHHHEEEEEEEEEE
T ss_pred             cchhcccccchhhHHHHHHHHHHhccCCCEEEEE
Confidence            322  21  1124578999999999999988543

; GO: 0008168 methyltransferase activity; PDB: 1WY7_A 1DUS_A 2OZV_A 2PJD_A 1VQ1_A 1NV9_A 1SG9_C 1NV8_A 3Q87_B 3DMF_A ....

>TIGR03438 probable methyltransferase

Probab=99.32  E-value=4.3e-11  Score=111.66  Aligned_cols=121  Identities=21%  Similarity=0.286  Sum_probs=85.5

Q ss_pred             hHHHHHHHHhcC------CCCCCEEEEeccCCChhhHHHHHhhcCC-CcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEE
Q 042119          116 SKLEYTILSENG------VVQPKKVAFVGSGPMPLTSIIMAKHHLT-STHFDNFDIDEAANDVARSIVASDAEFEGRMKF  188 (286)
Q Consensus       116 ~~~E~~~l~~~~------~~~~~~VL~IG~G~lp~tai~lA~~~~~-g~~V~~iDid~~ai~~Ar~~~~~~g~l~~~i~f  188 (286)
                      .+.|.+.+..+.      +.++.+|+++|||++-.|...+.+  ++ +.+|+++|+|++|++.|++.+.... -..+|.+
T Consensus        43 tr~E~~il~~~~~~ia~~~~~~~~iLELGcGtG~~t~~Ll~~--l~~~~~~~~iDiS~~mL~~a~~~l~~~~-p~~~v~~  119 (301)
T TIGR03438        43 TRTEAAILERHADEIAAATGAGCELVELGSGSSRKTRLLLDA--LRQPARYVPIDISADALKESAAALAADY-PQLEVHG  119 (301)
T ss_pred             HHHHHHHHHHHHHHHHHhhCCCCeEEecCCCcchhHHHHHHh--hccCCeEEEEECCHHHHHHHHHHHHhhC-CCceEEE
Confidence            566655544432      356789999999986555544443  34 7999999999999999999876543 2356889


Q ss_pred             EEccccchhhcCCCc----c-eeehhhhcc-CChhHHHHHHHHHHhhccCCcEEEEe
Q 042119          189 LTRDIMEVKEQLGEY----D-CIFLAALVG-MSKEEKLTILGHIRKYMKDGGILLVR  239 (286)
Q Consensus       189 ~~~D~~~~~~~l~~f----D-~V~~aalvg-~~~~~k~~vl~~l~~~l~pgg~lv~r  239 (286)
                      +++|..+.......+    + ++|..+.++ ++.++..++|+++++.|+|||.+++.
T Consensus       120 i~gD~~~~~~~~~~~~~~~~~~~~~gs~~~~~~~~e~~~~L~~i~~~L~pgG~~lig  176 (301)
T TIGR03438       120 ICADFTQPLALPPEPAAGRRLGFFPGSTIGNFTPEEAVAFLRRIRQLLGPGGGLLIG  176 (301)
T ss_pred             EEEcccchhhhhcccccCCeEEEEecccccCCCHHHHHHHHHHHHHhcCCCCEEEEe
Confidence            999987632222223    2 344444443 46677889999999999999999874

This model represents a distinct set of uncharacterized proteins found in the bacteria. Analysis by PSI-BLAST shows remote sequence homology to methyltransferases

>PRK00517 prmA ribosomal protein L11 methyltransferase; Reviewed

Probab=99.31  E-value=2.9e-11  Score=109.81  Aligned_cols=111  Identities=25%  Similarity=0.307  Sum_probs=82.4

Q ss_pred             hhhhHHHHHHHHhcCCCCCCEEEEeccCCChhhHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEcc
Q 042119          113 VKLSKLEYTILSENGVVQPKKVAFVGSGPMPLTSIIMAKHHLTSTHFDNFDIDEAANDVARSIVASDAEFEGRMKFLTRD  192 (286)
Q Consensus       113 ~~l~~~E~~~l~~~~~~~~~~VL~IG~G~lp~tai~lA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~g~l~~~i~f~~~D  192 (286)
                      ....+.-...+.+. ..++++|||||||+ |..++.+++  ....+|+++|+|+.+++.|+++++..+ +.+++.+..+|
T Consensus       103 h~tt~~~l~~l~~~-~~~~~~VLDiGcGs-G~l~i~~~~--~g~~~v~giDis~~~l~~A~~n~~~~~-~~~~~~~~~~~  177 (250)
T PRK00517        103 HPTTRLCLEALEKL-VLPGKTVLDVGCGS-GILAIAAAK--LGAKKVLAVDIDPQAVEAARENAELNG-VELNVYLPQGD  177 (250)
T ss_pred             CHHHHHHHHHHHhh-cCCCCEEEEeCCcH-HHHHHHHHH--cCCCeEEEEECCHHHHHHHHHHHHHcC-CCceEEEccCC
Confidence            34444444444332 46789999999997 777787776  223359999999999999999999888 66666665444


Q ss_pred             ccchhhcCCCcceeehhhhccCChhHHHHHHHHHHhhccCCcEEEEee
Q 042119          193 IMEVKEQLGEYDCIFLAALVGMSKEEKLTILGHIRKYMKDGGILLVRS  240 (286)
Q Consensus       193 ~~~~~~~l~~fD~V~~aalvg~~~~~k~~vl~~l~~~l~pgg~lv~r~  240 (286)
                      .        .||+|+....    .+....++.++.+.|+|||.+++..
T Consensus       178 ~--------~fD~Vvani~----~~~~~~l~~~~~~~LkpgG~lilsg  213 (250)
T PRK00517        178 L--------KADVIVANIL----ANPLLELAPDLARLLKPGGRLILSG  213 (250)
T ss_pred             C--------CcCEEEEcCc----HHHHHHHHHHHHHhcCCCcEEEEEE
Confidence            2        6999985432    2455678999999999999999864

>TIGR00406 prmA ribosomal protein L11 methyltransferase

Probab=99.30  E-value=4.4e-11  Score=110.97  Aligned_cols=103  Identities=24%  Similarity=0.286  Sum_probs=82.8

Q ss_pred             CCCCCEEEEeccCCChhhHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEccccchhhcCCCcceee
Q 042119          128 VVQPKKVAFVGSGPMPLTSIIMAKHHLTSTHFDNFDIDEAANDVARSIVASDAEFEGRMKFLTRDIMEVKEQLGEYDCIF  207 (286)
Q Consensus       128 ~~~~~~VL~IG~G~lp~tai~lA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~g~l~~~i~f~~~D~~~~~~~l~~fD~V~  207 (286)
                      ..++++|||||||+ |..++.+++  ....+|+++|+|+.+++.|++++...+ +..++.+..+|....  ..+.||+|+
T Consensus       157 ~~~g~~VLDvGcGs-G~lai~aa~--~g~~~V~avDid~~al~~a~~n~~~n~-~~~~~~~~~~~~~~~--~~~~fDlVv  230 (288)
T TIGR00406       157 DLKDKNVIDVGCGS-GILSIAALK--LGAAKVVGIDIDPLAVESARKNAELNQ-VSDRLQVKLIYLEQP--IEGKADVIV  230 (288)
T ss_pred             cCCCCEEEEeCCCh-hHHHHHHHH--cCCCeEEEEECCHHHHHHHHHHHHHcC-CCcceEEEecccccc--cCCCceEEE
Confidence            35779999999997 677777777  344589999999999999999999988 778888888874332  224799998


Q ss_pred             hhhhccCChhHHHHHHHHHHhhccCCcEEEEee
Q 042119          208 LAALVGMSKEEKLTILGHIRKYMKDGGILLVRS  240 (286)
Q Consensus       208 ~aalvg~~~~~k~~vl~~l~~~l~pgg~lv~r~  240 (286)
                      ...+.    ....+++.++.+.|+|||.+++..
T Consensus       231 an~~~----~~l~~ll~~~~~~LkpgG~li~sg  259 (288)
T TIGR00406       231 ANILA----EVIKELYPQFSRLVKPGGWLILSG  259 (288)
T ss_pred             EecCH----HHHHHHHHHHHHHcCCCcEEEEEe
Confidence            65432    455679999999999999999865

Ribosomal protein L11 methyltransferase is an S-adenosyl-L-methionine-dependent methyltransferase required for the modification of ribosomal protein L11. This protein is found in bacteria and (with a probable transit peptide) in Arabidopsis.

>PRK11088 rrmA 23S rRNA methyltransferase A; Provisional

Probab=99.30  E-value=2.3e-11  Score=111.64  Aligned_cols=109  Identities=16%  Similarity=0.182  Sum_probs=80.2

Q ss_pred             hcCCCCCCEEEEeccCCChhhHHHHHhhcCC---CcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEccccchhhcCC
Q 042119          125 ENGVVQPKKVAFVGSGPMPLTSIIMAKHHLT---STHFDNFDIDEAANDVARSIVASDAEFEGRMKFLTRDIMEVKEQLG  201 (286)
Q Consensus       125 ~~~~~~~~~VL~IG~G~lp~tai~lA~~~~~---g~~V~~iDid~~ai~~Ar~~~~~~g~l~~~i~f~~~D~~~~~~~l~  201 (286)
                      +.....+.+|||||||+ |..+..+++. .+   +.+|+|+|+|+++++.|++.   .    .+++|.++|+.+++...+
T Consensus        80 ~~l~~~~~~vLDiGcG~-G~~~~~l~~~-~~~~~~~~v~giD~s~~~l~~A~~~---~----~~~~~~~~d~~~lp~~~~  150 (272)
T PRK11088         80 ERLDEKATALLDIGCGE-GYYTHALADA-LPEITTMQLFGLDISKVAIKYAAKR---Y----PQVTFCVASSHRLPFADQ  150 (272)
T ss_pred             HhcCCCCCeEEEECCcC-CHHHHHHHHh-cccccCCeEEEECCCHHHHHHHHHh---C----CCCeEEEeecccCCCcCC
Confidence            33345668999999997 5555666653 33   35899999999999999874   2    358999999988877667


Q ss_pred             CcceeehhhhccCChhHHHHHHHHHHhhccCCcEEEEeec-----Ccceeeecc
Q 042119          202 EYDCIFLAALVGMSKEEKLTILGHIRKYMKDGGILLVRSA-----KGARAFLYP  250 (286)
Q Consensus       202 ~fD~V~~aalvg~~~~~k~~vl~~l~~~l~pgg~lv~r~~-----~g~r~~lyp  250 (286)
                      .||+|+.. +.    +   ..++++.|.|||||.+++...     ..++..+|.
T Consensus       151 sfD~I~~~-~~----~---~~~~e~~rvLkpgG~li~~~p~~~~l~el~~~~~~  196 (272)
T PRK11088        151 SLDAIIRI-YA----P---CKAEELARVVKPGGIVITVTPGPRHLFELKGLIYD  196 (272)
T ss_pred             ceeEEEEe-cC----C---CCHHHHHhhccCCCEEEEEeCCCcchHHHHHHhcc
Confidence            89999842 21    1   245789999999999998763     235556665

>TIGR03533 L3_gln_methyl protein-(glutamine-N5) methyltransferase, ribosomal protein L3-specific

Probab=99.28  E-value=7.1e-11  Score=109.50  Aligned_cols=109  Identities=20%  Similarity=0.266  Sum_probs=84.8

Q ss_pred             CCCCEEEEeccCCChhhHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEccccchhhcCCCcceeeh
Q 042119          129 VQPKKVAFVGSGPMPLTSIIMAKHHLTSTHFDNFDIDEAANDVARSIVASDAEFEGRMKFLTRDIMEVKEQLGEYDCIFL  208 (286)
Q Consensus       129 ~~~~~VL~IG~G~lp~tai~lA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~g~l~~~i~f~~~D~~~~~~~l~~fD~V~~  208 (286)
                      .++.+|||+|||+ |.-++.+|+ ..++++|+++|+|+++++.|+++++..| +.++++|+++|+.+.. ....||+|+.
T Consensus       120 ~~~~~vLDlG~Gs-G~i~~~la~-~~~~~~v~avDis~~al~~A~~n~~~~~-~~~~i~~~~~D~~~~~-~~~~fD~Iv~  195 (284)
T TIGR03533       120 EPVKRILDLCTGS-GCIAIACAY-AFPEAEVDAVDISPDALAVAEINIERHG-LEDRVTLIQSDLFAAL-PGRKYDLIVS  195 (284)
T ss_pred             CCCCEEEEEeCch-hHHHHHHHH-HCCCCEEEEEECCHHHHHHHHHHHHHcC-CCCcEEEEECchhhcc-CCCCccEEEE
Confidence            4568999999997 666778887 4688999999999999999999999999 6789999999986532 2236999985


Q ss_pred             hh----------h------------ccC--ChhHHHHHHHHHHhhccCCcEEEEeec
Q 042119          209 AA----------L------------VGM--SKEEKLTILGHIRKYMKDGGILLVRSA  241 (286)
Q Consensus       209 aa----------l------------vg~--~~~~k~~vl~~l~~~l~pgg~lv~r~~  241 (286)
                      .-          +            .|.  ..+...+++..+.++|+|||.+++..+
T Consensus       196 NPPy~~~~~~~~l~~~~~~ep~~al~gg~dGl~~~~~il~~a~~~L~~gG~l~~e~g  252 (284)
T TIGR03533       196 NPPYVDAEDMADLPAEYHHEPELALASGEDGLDLVRRILAEAADHLNENGVLVVEVG  252 (284)
T ss_pred             CCCCCCccchhhCCHhhhcCHHHHhcCCCcHHHHHHHHHHHHHHhcCCCCEEEEEEC
Confidence            31          0            000  012346789999999999999998754

Members of this protein family methylate ribosomal protein L3 on a glutamine side chain. This family is related to HemK, a protein-glutamine methyltranferase for peptide chain release factors.

>PRK00312 pcm protein-L-isoaspartate O-methyltransferase; Reviewed

Probab=99.28  E-value=3.8e-11  Score=106.01  Aligned_cols=103  Identities=15%  Similarity=0.148  Sum_probs=80.8

Q ss_pred             cCCCCCCEEEEeccCCChhhHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEccccchhhcCCCcce
Q 042119          126 NGVVQPKKVAFVGSGPMPLTSIIMAKHHLTSTHFDNFDIDEAANDVARSIVASDAEFEGRMKFLTRDIMEVKEQLGEYDC  205 (286)
Q Consensus       126 ~~~~~~~~VL~IG~G~lp~tai~lA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~g~l~~~i~f~~~D~~~~~~~l~~fD~  205 (286)
                      ..+.++.+||+||||+ |..+..+++   ...+|+++|+++++++.|++.+++.| + .++++.++|..+.....+.||+
T Consensus        74 l~~~~~~~VLeiG~Gs-G~~t~~la~---~~~~v~~vd~~~~~~~~a~~~~~~~~-~-~~v~~~~~d~~~~~~~~~~fD~  147 (212)
T PRK00312         74 LELKPGDRVLEIGTGS-GYQAAVLAH---LVRRVFSVERIKTLQWEAKRRLKQLG-L-HNVSVRHGDGWKGWPAYAPFDR  147 (212)
T ss_pred             cCCCCCCEEEEECCCc-cHHHHHHHH---HhCEEEEEeCCHHHHHHHHHHHHHCC-C-CceEEEECCcccCCCcCCCcCE
Confidence            3457889999999997 555667887   23589999999999999999999998 4 4699999998653333457999


Q ss_pred             eehhhhccCChhHHHHHHHHHHhhccCCcEEEEeec
Q 042119          206 IFLAALVGMSKEEKLTILGHIRKYMKDGGILLVRSA  241 (286)
Q Consensus       206 V~~aalvg~~~~~k~~vl~~l~~~l~pgg~lv~r~~  241 (286)
                      |++.+..       ..+.+.+.+.|+|||++++--.
T Consensus       148 I~~~~~~-------~~~~~~l~~~L~~gG~lv~~~~  176 (212)
T PRK00312        148 ILVTAAA-------PEIPRALLEQLKEGGILVAPVG  176 (212)
T ss_pred             EEEccCc-------hhhhHHHHHhcCCCcEEEEEEc
Confidence            9987543       1345678899999999988654

>PRK07580 Mg-protoporphyrin IX methyl transferase; Validated

Probab=99.28  E-value=9.4e-11  Score=103.87  Aligned_cols=105  Identities=19%  Similarity=0.297  Sum_probs=81.5

Q ss_pred             CCCCCCEEEEeccCCChhhHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEccccchhhcCCCccee
Q 042119          127 GVVQPKKVAFVGSGPMPLTSIIMAKHHLTSTHFDNFDIDEAANDVARSIVASDAEFEGRMKFLTRDIMEVKEQLGEYDCI  206 (286)
Q Consensus       127 ~~~~~~~VL~IG~G~lp~tai~lA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~g~l~~~i~f~~~D~~~~~~~l~~fD~V  206 (286)
                      +..++.+|||||||+ |..+..+++   .+.+|+++|+|+.+++.|++.....+ ..++++|.++|..   ...+.||+|
T Consensus        60 ~~~~~~~vLDvGcG~-G~~~~~l~~---~~~~v~~~D~s~~~i~~a~~~~~~~~-~~~~i~~~~~d~~---~~~~~fD~v  131 (230)
T PRK07580         60 GDLTGLRILDAGCGV-GSLSIPLAR---RGAKVVASDISPQMVEEARERAPEAG-LAGNITFEVGDLE---SLLGRFDTV  131 (230)
T ss_pred             CCCCCCEEEEEeCCC-CHHHHHHHH---cCCEEEEEECCHHHHHHHHHHHHhcC-CccCcEEEEcCch---hccCCcCEE
Confidence            346778999999997 556677887   46789999999999999999998888 5678999999942   233679999


Q ss_pred             ehhhhc-cCChhHHHHHHHHHHhhccCCcEEEEe
Q 042119          207 FLAALV-GMSKEEKLTILGHIRKYMKDGGILLVR  239 (286)
Q Consensus       207 ~~aalv-g~~~~~k~~vl~~l~~~l~pgg~lv~r  239 (286)
                      +....+ .++.+....++..+.+.+++|+++.+.
T Consensus       132 ~~~~~l~~~~~~~~~~~l~~l~~~~~~~~~i~~~  165 (230)
T PRK07580        132 VCLDVLIHYPQEDAARMLAHLASLTRGSLIFTFA  165 (230)
T ss_pred             EEcchhhcCCHHHHHHHHHHHHhhcCCeEEEEEC
Confidence            865443 445566678899999887666655543

>smart00138 MeTrc Methyltransferase, chemotaxis proteins

Probab=99.27  E-value=2.5e-11  Score=111.40  Aligned_cols=115  Identities=20%  Similarity=0.330  Sum_probs=85.4

Q ss_pred             CCCCEEEEeccCCChh---hHHHHHhhcCC-----CcEEEEEeCChHHHHHHHHHHH------hc------------C--
Q 042119          129 VQPKKVAFVGSGPMPL---TSIIMAKHHLT-----STHFDNFDIDEAANDVARSIVA------SD------------A--  180 (286)
Q Consensus       129 ~~~~~VL~IG~G~lp~---tai~lA~~~~~-----g~~V~~iDid~~ai~~Ar~~~~------~~------------g--  180 (286)
                      .++.+|+++|||++-.   -|+.+++ ..+     +.+|+|+|+|++|++.|++.+-      ..            +  
T Consensus        98 ~~~~ri~d~GCgtGee~YslA~~l~e-~~~~~~~~~~~I~g~Dis~~~L~~Ar~~~y~~~~~~~~~~~~~~~yf~~~~~~  176 (264)
T smart00138       98 GRRVRIWSAGCSTGEEPYSLAMLLAE-TLPKAREPDVKILATDIDLKALEKARAGIYPERELEDLPKALLARYFSRVEDK  176 (264)
T ss_pred             CCCEEEEeccccCChHHHHHHHHHHH-HhhhcCCCCeEEEEEECCHHHHHHHHcCCCCHHHHhcCCHHHHhhhEEeCCCe
Confidence            4568999999997421   2445555 232     5799999999999999998531      00            0  


Q ss_pred             -----CCCCCeEEEEccccchhhcCCCcceeehhh-hccCChhHHHHHHHHHHhhccCCcEEEEeecCcc
Q 042119          181 -----EFEGRMKFLTRDIMEVKEQLGEYDCIFLAA-LVGMSKEEKLTILGHIRKYMKDGGILLVRSAKGA  244 (286)
Q Consensus       181 -----~l~~~i~f~~~D~~~~~~~l~~fD~V~~aa-lvg~~~~~k~~vl~~l~~~l~pgg~lv~r~~~g~  244 (286)
                           .+.++|+|.++|+.+.+...+.||+|+... ++..+.+.+.++++++++.|+|||.+++-....+
T Consensus       177 ~~v~~~ir~~V~F~~~dl~~~~~~~~~fD~I~crnvl~yf~~~~~~~~l~~l~~~L~pGG~L~lg~~E~~  246 (264)
T smart00138      177 YRVKPELKERVRFAKHNLLAESPPLGDFDLIFCRNVLIYFDEPTQRKLLNRFAEALKPGGYLFLGHSESL  246 (264)
T ss_pred             EEEChHHhCcCEEeeccCCCCCCccCCCCEEEechhHHhCCHHHHHHHHHHHHHHhCCCeEEEEECcccC
Confidence                 022579999999988665556899999643 3455778888999999999999999999765443

Methylates methyl-accepting chemotaxis proteins to form gamma-glutamyl methyl ester residues.

>PRK13943 protein-L-isoaspartate O-methyltransferase; Provisional

Probab=99.27  E-value=7.1e-11  Score=111.40  Aligned_cols=106  Identities=17%  Similarity=0.207  Sum_probs=82.9

Q ss_pred             hcCCCCCCEEEEeccCCChhhHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEccccchhhcCCCcc
Q 042119          125 ENGVVQPKKVAFVGSGPMPLTSIIMAKHHLTSTHFDNFDIDEAANDVARSIVASDAEFEGRMKFLTRDIMEVKEQLGEYD  204 (286)
Q Consensus       125 ~~~~~~~~~VL~IG~G~lp~tai~lA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~g~l~~~i~f~~~D~~~~~~~l~~fD  204 (286)
                      ...++++.+||+||||+ |..++.+|+.....++|+++|+++++++.|++.+++.| . +++.++++|+.+...+.+.||
T Consensus        75 ~L~i~~g~~VLDIG~Gt-G~~a~~LA~~~~~~g~VvgVDis~~~l~~Ar~~l~~~g-~-~nV~~i~gD~~~~~~~~~~fD  151 (322)
T PRK13943         75 WVGLDKGMRVLEIGGGT-GYNAAVMSRVVGEKGLVVSVEYSRKICEIAKRNVRRLG-I-ENVIFVCGDGYYGVPEFAPYD  151 (322)
T ss_pred             hcCCCCCCEEEEEeCCc-cHHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHHHHcC-C-CcEEEEeCChhhcccccCCcc
Confidence            34567889999999996 67777788732223589999999999999999999999 4 689999999877655556799


Q ss_pred             eeehhhhccCChhHHHHHHHHHHhhccCCcEEEEee
Q 042119          205 CIFLAALVGMSKEEKLTILGHIRKYMKDGGILLVRS  240 (286)
Q Consensus       205 ~V~~aalvg~~~~~k~~vl~~l~~~l~pgg~lv~r~  240 (286)
                      +|+++..+.       .+...+.+.|+|||++++-.
T Consensus       152 ~Ii~~~g~~-------~ip~~~~~~LkpgG~Lvv~~  180 (322)
T PRK13943        152 VIFVTVGVD-------EVPETWFTQLKEGGRVIVPI  180 (322)
T ss_pred             EEEECCchH-------HhHHHHHHhcCCCCEEEEEe
Confidence            999875431       23345778999999988854

>KOG1663 consensus O-methyltransferase [Secondary metabolites biosynthesis, transport and catabolism]

Probab=99.27  E-value=2.8e-11  Score=107.86  Aligned_cols=107  Identities=16%  Similarity=0.309  Sum_probs=96.2

Q ss_pred             CCCCEEEEeccCCChhhHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEccccchhhcC------CC
Q 042119          129 VQPKKVAFVGSGPMPLTSIIMAKHHLTSTHFDNFDIDEAANDVARSIVASDAEFEGRMKFLTRDIMEVKEQL------GE  202 (286)
Q Consensus       129 ~~~~~VL~IG~G~lp~tai~lA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~g~l~~~i~f~~~D~~~~~~~l------~~  202 (286)
                      -.++++++||.= .|+|++.+|.+...+++|+++|+|+++.+++.++++..| +.++|+|+++++.+....+      +.
T Consensus        72 ~~ak~~lelGvf-TGySaL~~Alalp~dGrv~a~eid~~~~~~~~~~~k~ag-v~~KI~~i~g~a~esLd~l~~~~~~~t  149 (237)
T KOG1663|consen   72 LNAKRTLELGVF-TGYSALAVALALPEDGRVVAIEIDADAYEIGLELVKLAG-VDHKITFIEGPALESLDELLADGESGT  149 (237)
T ss_pred             hCCceEEEEecc-cCHHHHHHHHhcCCCceEEEEecChHHHHHhHHHHHhcc-ccceeeeeecchhhhHHHHHhcCCCCc
Confidence            468999999997 599999999977789999999999999999999999999 8999999999998755432      46


Q ss_pred             cceeehhhhccCChhHHHHHHHHHHhhccCCcEEEEeec
Q 042119          203 YDCIFLAALVGMSKEEKLTILGHIRKYMKDGGILLVRSA  241 (286)
Q Consensus       203 fD~V~~aalvg~~~~~k~~vl~~l~~~l~pgg~lv~r~~  241 (286)
                      ||+||+++..    .++...++++.+.+|+||+|++.+.
T Consensus       150 fDfaFvDadK----~nY~~y~e~~l~Llr~GGvi~~DNv  184 (237)
T KOG1663|consen  150 FDFAFVDADK----DNYSNYYERLLRLLRVGGVIVVDNV  184 (237)
T ss_pred             eeEEEEccch----HHHHHHHHHHHhhcccccEEEEecc
Confidence            9999999865    7888999999999999999999983

>PRK11705 cyclopropane fatty acyl phospholipid synthase; Provisional

Probab=99.27  E-value=6.1e-11  Score=114.33  Aligned_cols=106  Identities=16%  Similarity=0.231  Sum_probs=82.1

Q ss_pred             HhcCCCCCCEEEEeccCCChhhHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEccccchhhcCCCc
Q 042119          124 SENGVVQPKKVAFVGSGPMPLTSIIMAKHHLTSTHFDNFDIDEAANDVARSIVASDAEFEGRMKFLTRDIMEVKEQLGEY  203 (286)
Q Consensus       124 ~~~~~~~~~~VL~IG~G~lp~tai~lA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~g~l~~~i~f~~~D~~~~~~~l~~f  203 (286)
                      .+.++.++.+|||||||.+ ..++.+|++  .|++|+|+|+|+++++.|++.++  + +  .+++..+|..++   .+.|
T Consensus       161 ~~l~l~~g~rVLDIGcG~G-~~a~~la~~--~g~~V~giDlS~~~l~~A~~~~~--~-l--~v~~~~~D~~~l---~~~f  229 (383)
T PRK11705        161 RKLQLKPGMRVLDIGCGWG-GLARYAAEH--YGVSVVGVTISAEQQKLAQERCA--G-L--PVEIRLQDYRDL---NGQF  229 (383)
T ss_pred             HHhCCCCCCEEEEeCCCcc-HHHHHHHHH--CCCEEEEEeCCHHHHHHHHHHhc--c-C--eEEEEECchhhc---CCCC
Confidence            4456688999999999975 455777773  58999999999999999999874  4 2  488999998654   2579


Q ss_pred             ceeehhhhc-cCChhHHHHHHHHHHhhccCCcEEEEee
Q 042119          204 DCIFLAALV-GMSKEEKLTILGHIRKYMKDGGILLVRS  240 (286)
Q Consensus       204 D~V~~aalv-g~~~~~k~~vl~~l~~~l~pgg~lv~r~  240 (286)
                      |.|+..... .....+...+++++.+.|||||.+++..
T Consensus       230 D~Ivs~~~~ehvg~~~~~~~l~~i~r~LkpGG~lvl~~  267 (383)
T PRK11705        230 DRIVSVGMFEHVGPKNYRTYFEVVRRCLKPDGLFLLHT  267 (383)
T ss_pred             CEEEEeCchhhCChHHHHHHHHHHHHHcCCCcEEEEEE
Confidence            998743322 2233556789999999999999999864

>PRK15068 tRNA mo(5)U34 methyltransferase; Provisional

Probab=99.27  E-value=5.3e-11  Score=112.21  Aligned_cols=107  Identities=16%  Similarity=0.185  Sum_probs=83.4

Q ss_pred             CCCCCEEEEeccCCChhhHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEccccchhhcCCCcceee
Q 042119          128 VVQPKKVAFVGSGPMPLTSIIMAKHHLTSTHFDNFDIDEAANDVARSIVASDAEFEGRMKFLTRDIMEVKEQLGEYDCIF  207 (286)
Q Consensus       128 ~~~~~~VL~IG~G~lp~tai~lA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~g~l~~~i~f~~~D~~~~~~~l~~fD~V~  207 (286)
                      ...+++|||||||. |.-++.+++.  ...+|+|+|+|+.++..++...+..+ ...+++|+.+|+.+++. .+.||+|+
T Consensus       120 ~l~g~~VLDIGCG~-G~~~~~la~~--g~~~V~GiD~S~~~l~q~~a~~~~~~-~~~~i~~~~~d~e~lp~-~~~FD~V~  194 (322)
T PRK15068        120 PLKGRTVLDVGCGN-GYHMWRMLGA--GAKLVVGIDPSQLFLCQFEAVRKLLG-NDQRAHLLPLGIEQLPA-LKAFDTVF  194 (322)
T ss_pred             CCCCCEEEEeccCC-cHHHHHHHHc--CCCEEEEEcCCHHHHHHHHHHHHhcC-CCCCeEEEeCCHHHCCC-cCCcCEEE
Confidence            45789999999996 7777888872  23469999999999987766555554 34689999999988776 56799999


Q ss_pred             hhhhccCChhHHHHHHHHHHhhccCCcEEEEee
Q 042119          208 LAALVGMSKEEKLTILGHIRKYMKDGGILLVRS  240 (286)
Q Consensus       208 ~aalvg~~~~~k~~vl~~l~~~l~pgg~lv~r~  240 (286)
                      ....+. +..+...+++++++.|+|||.+++.+
T Consensus       195 s~~vl~-H~~dp~~~L~~l~~~LkpGG~lvl~~  226 (322)
T PRK15068        195 SMGVLY-HRRSPLDHLKQLKDQLVPGGELVLET  226 (322)
T ss_pred             ECChhh-ccCCHHHHHHHHHHhcCCCcEEEEEE
Confidence            654432 23566789999999999999998864

>PF01135 PCMT: Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT); InterPro: IPR000682 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (2

Probab=99.26  E-value=2.9e-11  Score=107.49  Aligned_cols=112  Identities=19%  Similarity=0.182  Sum_probs=83.0

Q ss_pred             HHHHHhcCCCCCCEEEEeccCCChhhHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEccccchhhc
Q 042119          120 YTILSENGVVQPKKVAFVGSGPMPLTSIIMAKHHLTSTHFDNFDIDEAANDVARSIVASDAEFEGRMKFLTRDIMEVKEQ  199 (286)
Q Consensus       120 ~~~l~~~~~~~~~~VL~IG~G~lp~tai~lA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~g~l~~~i~f~~~D~~~~~~~  199 (286)
                      ...+....++++.+||+||||+ |+.+..+|+...+...|++||++++.++.|++.++++|.  .+|+++++|...-..+
T Consensus        62 a~~l~~L~l~pg~~VLeIGtGs-GY~aAlla~lvg~~g~Vv~vE~~~~l~~~A~~~l~~~~~--~nv~~~~gdg~~g~~~  138 (209)
T PF01135_consen   62 ARMLEALDLKPGDRVLEIGTGS-GYQAALLAHLVGPVGRVVSVERDPELAERARRNLARLGI--DNVEVVVGDGSEGWPE  138 (209)
T ss_dssp             HHHHHHTTC-TT-EEEEES-TT-SHHHHHHHHHHSTTEEEEEEESBHHHHHHHHHHHHHHTT--HSEEEEES-GGGTTGG
T ss_pred             HHHHHHHhcCCCCEEEEecCCC-cHHHHHHHHhcCccceEEEECccHHHHHHHHHHHHHhcc--CceeEEEcchhhcccc
Confidence            3344444679999999999995 888888888444567899999999999999999999994  5899999998764444


Q ss_pred             CCCcceeehhhhccCChhHHHHHHHHHHhhccCCcEEEEeec
Q 042119          200 LGEYDCIFLAALVGMSKEEKLTILGHIRKYMKDGGILLVRSA  241 (286)
Q Consensus       200 l~~fD~V~~aalvg~~~~~k~~vl~~l~~~l~pgg~lv~r~~  241 (286)
                      ...||.|++.+.+.   +    +=..+.+.|++||++++--.
T Consensus       139 ~apfD~I~v~~a~~---~----ip~~l~~qL~~gGrLV~pi~  173 (209)
T PF01135_consen  139 EAPFDRIIVTAAVP---E----IPEALLEQLKPGGRLVAPIG  173 (209)
T ss_dssp             G-SEEEEEESSBBS---S------HHHHHTEEEEEEEEEEES
T ss_pred             CCCcCEEEEeeccc---h----HHHHHHHhcCCCcEEEEEEc
Confidence            46899999876652   2    22346777899999998543

1.1.77 from EC) (PCMT) [] (which is also known as L-isoaspartyl protein carboxyl methyltransferase) is an enzyme that catalyses the transfer of a methyl group from S-adenosylmethionine to the free carboxyl groups of D-aspartyl or L-isoaspartyl residues in a variety of peptides and proteins. The enzyme does not act on normal L-aspartyl residues L-isoaspartyl and D-aspartyl are the products of the spontaneous deamidation and/or isomerisation of normal L-aspartyl and L-asparaginyl residues in proteins. PCMT plays a role in the repair and/or degradation of these damaged proteins; the enzymatic methyl esterification of the abnormal residues can lead to their conversion to normal L-aspartyl residues. The SAM domain is present in most of these proteins.; GO: 0004719 protein-L-isoaspartate (D-aspartate) O-methyltransferase activity, 0006464 protein modification process; PDB: 3LBF_A 1DL5_B 1JG3_B 1JG2_A 1JG1_A 1JG4_A 2YXE_A 2PBF_B 1VBF_C 1R18_A ....

>PF05401 NodS: Nodulation protein S (NodS); InterPro: IPR008715 This entry consists of nodulation S (NodS) proteins

Probab=99.26  E-value=5.8e-11  Score=104.01  Aligned_cols=104  Identities=20%  Similarity=0.243  Sum_probs=75.4

Q ss_pred             CCCCEEEEeccCCChhhHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEccccchhhcCCCcceeeh
Q 042119          129 VQPKKVAFVGSGPMPLTSIIMAKHHLTSTHFDNFDIDEAANDVARSIVASDAEFEGRMKFLTRDIMEVKEQLGEYDCIFL  208 (286)
Q Consensus       129 ~~~~~VL~IG~G~lp~tai~lA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~g~l~~~i~f~~~D~~~~~~~l~~fD~V~~  208 (286)
                      ..-.+++++|||. |.-+..||.   ..-+++++|+++.|++.||+.++..    .+|+|+++|+.+.. +.+.||+|++
T Consensus        42 ~ry~~alEvGCs~-G~lT~~LA~---rCd~LlavDis~~Al~~Ar~Rl~~~----~~V~~~~~dvp~~~-P~~~FDLIV~  112 (201)
T PF05401_consen   42 RRYRRALEVGCSI-GVLTERLAP---RCDRLLAVDISPRALARARERLAGL----PHVEWIQADVPEFW-PEGRFDLIVL  112 (201)
T ss_dssp             SSEEEEEEE--TT-SHHHHHHGG---GEEEEEEEES-HHHHHHHHHHTTT-----SSEEEEES-TTT----SS-EEEEEE
T ss_pred             cccceeEecCCCc-cHHHHHHHH---hhCceEEEeCCHHHHHHHHHhcCCC----CCeEEEECcCCCCC-CCCCeeEEEE
Confidence            4558999999996 555556777   3478999999999999999997643    47999999996643 3368999987


Q ss_pred             hhhc-cC-ChhHHHHHHHHHHhhccCCcEEEEeec
Q 042119          209 AALV-GM-SKEEKLTILGHIRKYMKDGGILLVRSA  241 (286)
Q Consensus       209 aalv-g~-~~~~k~~vl~~l~~~l~pgg~lv~r~~  241 (286)
                      +... -+ +.++...+++.+.+.|+|||.+|+-+.
T Consensus       113 SEVlYYL~~~~~L~~~l~~l~~~L~pgG~LV~g~~  147 (201)
T PF05401_consen  113 SEVLYYLDDAEDLRAALDRLVAALAPGGHLVFGHA  147 (201)
T ss_dssp             ES-GGGSSSHHHHHHHHHHHHHTEEEEEEEEEEEE
T ss_pred             ehHhHcCCCHHHHHHHHHHHHHHhCCCCEEEEEEe
Confidence            7543 22 346778899999999999999999653

The products of the rhizobial nodulation genes are involved in the biosynthesis of lipochitin oligosaccharides (LCOs), which are host-specific signal molecules required for nodule formation. NodS is an S-adenosyl-L-methionine (SAM)-dependent methyltransferase involved in N methylation of LCOs. NodS uses N-deacetylated chitooligosaccharides, the products of the NodBC proteins, as its methyl acceptors [].; GO: 0008757 S-adenosylmethionine-dependent methyltransferase activity, 0009312 oligosaccharide biosynthetic process, 0009877 nodulation; PDB: 3OFK_D 3OFJ_A.

>PLN02490 MPBQ/MSBQ methyltransferase

Probab=99.25  E-value=3.2e-11  Score=114.41  Aligned_cols=104  Identities=16%  Similarity=0.115  Sum_probs=82.6

Q ss_pred             CCCCEEEEeccCCChhhHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEccccchhhcCCCcceeeh
Q 042119          129 VQPKKVAFVGSGPMPLTSIIMAKHHLTSTHFDNFDIDEAANDVARSIVASDAEFEGRMKFLTRDIMEVKEQLGEYDCIFL  208 (286)
Q Consensus       129 ~~~~~VL~IG~G~lp~tai~lA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~g~l~~~i~f~~~D~~~~~~~l~~fD~V~~  208 (286)
                      .++.+|||||||+ |..++.+++ ..++.+|+++|+|+++++.|++....     .+++++++|+.+.+...+.||+|+.
T Consensus       112 ~~~~~VLDLGcGt-G~~~l~La~-~~~~~~VtgVD~S~~mL~~A~~k~~~-----~~i~~i~gD~e~lp~~~~sFDvVIs  184 (340)
T PLN02490        112 DRNLKVVDVGGGT-GFTTLGIVK-HVDAKNVTILDQSPHQLAKAKQKEPL-----KECKIIEGDAEDLPFPTDYADRYVS  184 (340)
T ss_pred             CCCCEEEEEecCC-cHHHHHHHH-HCCCCEEEEEECCHHHHHHHHHhhhc-----cCCeEEeccHHhCCCCCCceeEEEE
Confidence            4678999999997 555667776 35778999999999999999987431     4689999999887665567999987


Q ss_pred             hhhccCChhHHHHHHHHHHhhccCCcEEEEee
Q 042119          209 AALVGMSKEEKLTILGHIRKYMKDGGILLVRS  240 (286)
Q Consensus       209 aalvg~~~~~k~~vl~~l~~~l~pgg~lv~r~  240 (286)
                      ...+.. ..++.++++++.+.|+|||.+++..
T Consensus       185 ~~~L~~-~~d~~~~L~e~~rvLkPGG~LvIi~  215 (340)
T PLN02490        185 AGSIEY-WPDPQRGIKEAYRVLKIGGKACLIG  215 (340)
T ss_pred             cChhhh-CCCHHHHHHHHHHhcCCCcEEEEEE
Confidence            544322 2466789999999999999998754

>TIGR00446 nop2p NOL1/NOP2/sun family putative RNA methylase

Probab=99.24  E-value=8.6e-11  Score=107.71  Aligned_cols=111  Identities=14%  Similarity=0.144  Sum_probs=86.1

Q ss_pred             CCCCCCEEEEeccCCChhhHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEccccchhhcCCCccee
Q 042119          127 GVVQPKKVAFVGSGPMPLTSIIMAKHHLTSTHFDNFDIDEAANDVARSIVASDAEFEGRMKFLTRDIMEVKEQLGEYDCI  206 (286)
Q Consensus       127 ~~~~~~~VL~IG~G~lp~tai~lA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~g~l~~~i~f~~~D~~~~~~~l~~fD~V  206 (286)
                      .+.++.+|||+||||++.|.. +|+....++.|+++|+++.+++.+++++++.| + .+++++++|+.+.....+.||.|
T Consensus        68 ~~~~g~~VLDl~ag~G~kt~~-la~~~~~~g~v~a~D~~~~~l~~~~~n~~~~g-~-~~v~~~~~D~~~~~~~~~~fD~V  144 (264)
T TIGR00446        68 EPDPPERVLDMAAAPGGKTTQ-ISALMKNEGAIVANEFSKSRTKVLIANINRCG-V-LNVAVTNFDGRVFGAAVPKFDAI  144 (264)
T ss_pred             CCCCcCEEEEECCCchHHHHH-HHHHcCCCCEEEEEcCCHHHHHHHHHHHHHcC-C-CcEEEecCCHHHhhhhccCCCEE
Confidence            457889999999999877755 45423345799999999999999999999999 4 57999999997765555579999


Q ss_pred             ehhhh---cc-----------CCh-------hHHHHHHHHHHhhccCCcEEEEee
Q 042119          207 FLAAL---VG-----------MSK-------EEKLTILGHIRKYMKDGGILLVRS  240 (286)
Q Consensus       207 ~~aal---vg-----------~~~-------~~k~~vl~~l~~~l~pgg~lv~r~  240 (286)
                      ++++-   .|           +..       ....++|++..+.+||||+|++.+
T Consensus       145 l~D~Pcsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~lkpgG~lvYst  199 (264)
T TIGR00446       145 LLDAPCSGEGVIRKDPSRKKNWSEEDIQEISALQKELIDSAFDALKPGGVLVYST  199 (264)
T ss_pred             EEcCCCCCCcccccChhhhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEe
Confidence            98641   11           011       112469999999999999999875

>PF05724 TPMT: Thiopurine S-methyltransferase (TPMT); InterPro: IPR008854 This family consists of thiopurine S-methyltransferase proteins from both eukaryotes and prokaryotes

Probab=99.24  E-value=5e-11  Score=106.62  Aligned_cols=132  Identities=17%  Similarity=0.205  Sum_probs=95.5

Q ss_pred             cCCCCcccccccCcCccchhhhhHHHHHHHHhcCCCCCCEEEEeccCCChhhHHHHHhhcCCCcEEEEEeCChHHHHHHH
Q 042119           94 TKIPQPLNNLSLFPYYGNYVKLSKLEYTILSENGVVQPKKVAFVGSGPMPLTSIIMAKHHLTSTHFDNFDIDEAANDVAR  173 (286)
Q Consensus        94 ~~~~~p~~~L~~fpy~~ny~~l~~~E~~~l~~~~~~~~~~VL~IG~G~lp~tai~lA~~~~~g~~V~~iDid~~ai~~Ar  173 (286)
                      .++..||+.-...|.+..|..-          ....++.|||+.||| -|..+++||+   .|.+|+|+|+|+.|++.+.
T Consensus        11 ~~~~~~w~~~~~~p~L~~~~~~----------l~~~~~~rvLvPgCG-~g~D~~~La~---~G~~VvGvDls~~Ai~~~~   76 (218)
T PF05724_consen   11 QEGQTPWDQGEPNPALVEYLDS----------LALKPGGRVLVPGCG-KGYDMLWLAE---QGHDVVGVDLSPTAIEQAF   76 (218)
T ss_dssp             HTT--TT--TTSTHHHHHHHHH----------HTTSTSEEEEETTTT-TSCHHHHHHH---TTEEEEEEES-HHHHHHHH
T ss_pred             hcCCCCCCCCCCCHHHHHHHHh----------cCCCCCCeEEEeCCC-ChHHHHHHHH---CCCeEEEEecCHHHHHHHH
Confidence            3356789887888876655332          134677899999999 5899999999   7999999999999999985


Q ss_pred             HHHHh------cCC----CCCCeEEEEccccchhhcC-CCcceeehh-hhccCChhHHHHHHHHHHhhccCCcEEEEe
Q 042119          174 SIVAS------DAE----FEGRMKFLTRDIMEVKEQL-GEYDCIFLA-ALVGMSKEEKLTILGHIRKYMKDGGILLVR  239 (286)
Q Consensus       174 ~~~~~------~g~----l~~~i~f~~~D~~~~~~~l-~~fD~V~~a-alvg~~~~~k~~vl~~l~~~l~pgg~lv~r  239 (286)
                      +.-..      .+.    -..+|++.+||..++.... +.||+||-. +++.++++.+.+..+++.+.|+|||.+++-
T Consensus        77 ~e~~~~~~~~~~~~~~~~~~~~i~~~~gDfF~l~~~~~g~fD~iyDr~~l~Alpp~~R~~Ya~~l~~ll~p~g~~lLi  154 (218)
T PF05724_consen   77 EENNLEPTVTSVGGFKRYQAGRITIYCGDFFELPPEDVGKFDLIYDRTFLCALPPEMRERYAQQLASLLKPGGRGLLI  154 (218)
T ss_dssp             HHCTTEEECTTCTTEEEETTSSEEEEES-TTTGGGSCHHSEEEEEECSSTTTS-GGGHHHHHHHHHHCEEEEEEEEEE
T ss_pred             HHhccCCCcccccceeeecCCceEEEEcccccCChhhcCCceEEEEecccccCCHHHHHHHHHHHHHHhCCCCcEEEE
Confidence            43221      010    1347899999998876654 479999965 455778899999999999999999994443

Thiopurine S-methyltransferase (TPMT) is a cytosolic enzyme that catalyses S-methylation of aromatic and heterocyclic sulphydryl compounds, including anticancer and immunosuppressive thiopurines [].; GO: 0008119 thiopurine S-methyltransferase activity, 0008152 metabolic process, 0005737 cytoplasm; PDB: 1PJZ_A 2H11_A 2BZG_A 3LCC_A 3BGD_A 2GB4_A 3BGI_B.

>TIGR00452 methyltransferase, putative

Probab=99.24  E-value=8.7e-11  Score=110.43  Aligned_cols=108  Identities=13%  Similarity=0.106  Sum_probs=81.8

Q ss_pred             cCCCCCCEEEEeccCCChhhHHHHHhhcCCC-cEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEccccchhhcCCCcc
Q 042119          126 NGVVQPKKVAFVGSGPMPLTSIIMAKHHLTS-THFDNFDIDEAANDVARSIVASDAEFEGRMKFLTRDIMEVKEQLGEYD  204 (286)
Q Consensus       126 ~~~~~~~~VL~IG~G~lp~tai~lA~~~~~g-~~V~~iDid~~ai~~Ar~~~~~~g~l~~~i~f~~~D~~~~~~~l~~fD  204 (286)
                      .+..++++|||||||+ |+-++.++.   .| ..|+|||+|+.++..++..-+..+ ...++.+..+|+.+++.. ..||
T Consensus       117 l~~~~g~~VLDvGCG~-G~~~~~~~~---~g~~~v~GiDpS~~ml~q~~~~~~~~~-~~~~v~~~~~~ie~lp~~-~~FD  190 (314)
T TIGR00452       117 LSPLKGRTILDVGCGS-GYHMWRMLG---HGAKSLVGIDPTVLFLCQFEAVRKLLD-NDKRAILEPLGIEQLHEL-YAFD  190 (314)
T ss_pred             cCCCCCCEEEEeccCC-cHHHHHHHH---cCCCEEEEEcCCHHHHHHHHHHHHHhc-cCCCeEEEECCHHHCCCC-CCcC
Confidence            3567789999999996 666667766   34 379999999999987655434334 246899999998887653 4799


Q ss_pred             eeehhhhccCChhHHHHHHHHHHhhccCCcEEEEee
Q 042119          205 CIFLAALVGMSKEEKLTILGHIRKYMKDGGILLVRS  240 (286)
Q Consensus       205 ~V~~aalvg~~~~~k~~vl~~l~~~l~pgg~lv~r~  240 (286)
                      +||....+. +..+...+|.++++.|+|||.+++.+
T Consensus       191 ~V~s~gvL~-H~~dp~~~L~el~r~LkpGG~Lvlet  225 (314)
T TIGR00452       191 TVFSMGVLY-HRKSPLEHLKQLKHQLVIKGELVLET  225 (314)
T ss_pred             EEEEcchhh-ccCCHHHHHHHHHHhcCCCCEEEEEE
Confidence            999665432 23566789999999999999999864

Known examples to date are restricted to the proteobacteria.

>PRK00811 spermidine synthase; Provisional

Probab=99.23  E-value=1.1e-10  Score=108.05  Aligned_cols=111  Identities=21%  Similarity=0.325  Sum_probs=83.7

Q ss_pred             CCCCEEEEeccCCChhhHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCC-C--CCCeEEEEccccchhhcC-CCcc
Q 042119          129 VQPKKVAFVGSGPMPLTSIIMAKHHLTSTHFDNFDIDEAANDVARSIVASDAE-F--EGRMKFLTRDIMEVKEQL-GEYD  204 (286)
Q Consensus       129 ~~~~~VL~IG~G~lp~tai~lA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~g~-l--~~~i~f~~~D~~~~~~~l-~~fD  204 (286)
                      ..+++||+||||. |.++..+++ +....+|++||+|+++++.|++.+...+. .  ..|++++.+|+.+..... +.||
T Consensus        75 ~~p~~VL~iG~G~-G~~~~~~l~-~~~~~~V~~VEid~~vv~~a~~~~~~~~~~~~~d~rv~v~~~Da~~~l~~~~~~yD  152 (283)
T PRK00811         75 PNPKRVLIIGGGD-GGTLREVLK-HPSVEKITLVEIDERVVEVCRKYLPEIAGGAYDDPRVELVIGDGIKFVAETENSFD  152 (283)
T ss_pred             CCCCEEEEEecCc-hHHHHHHHc-CCCCCEEEEEeCCHHHHHHHHHHhHHhccccccCCceEEEECchHHHHhhCCCccc
Confidence            5689999999995 666676766 33457999999999999999998865320 1  468999999998765432 4799


Q ss_pred             eeehhhhccCChhH---HHHHHHHHHhhccCCcEEEEeec
Q 042119          205 CIFLAALVGMSKEE---KLTILGHIRKYMKDGGILLVRSA  241 (286)
Q Consensus       205 ~V~~aalvg~~~~~---k~~vl~~l~~~l~pgg~lv~r~~  241 (286)
                      +|+.++.-......   ..++++.+.+.|+|||++++...
T Consensus       153 vIi~D~~dp~~~~~~l~t~ef~~~~~~~L~~gGvlv~~~~  192 (283)
T PRK00811        153 VIIVDSTDPVGPAEGLFTKEFYENCKRALKEDGIFVAQSG  192 (283)
T ss_pred             EEEECCCCCCCchhhhhHHHHHHHHHHhcCCCcEEEEeCC
Confidence            99987532111111   25789999999999999998643

>TIGR03587 Pse_Me-ase pseudaminic acid biosynthesis-associated methylase

Probab=99.22  E-value=1.1e-10  Score=103.33  Aligned_cols=99  Identities=10%  Similarity=0.195  Sum_probs=77.4

Q ss_pred             CCCCEEEEeccCCChhhHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEccccchhhcCCCcceeeh
Q 042119          129 VQPKKVAFVGSGPMPLTSIIMAKHHLTSTHFDNFDIDEAANDVARSIVASDAEFEGRMKFLTRDIMEVKEQLGEYDCIFL  208 (286)
Q Consensus       129 ~~~~~VL~IG~G~lp~tai~lA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~g~l~~~i~f~~~D~~~~~~~l~~fD~V~~  208 (286)
                      .++.+||+||||+ |..+..+++ ..++.+++|||+|+++++.|++..       .++++.++|+.+ +...+.||+|+.
T Consensus        42 ~~~~~VLDiGCG~-G~~~~~L~~-~~~~~~v~giDiS~~~l~~A~~~~-------~~~~~~~~d~~~-~~~~~sfD~V~~  111 (204)
T TIGR03587        42 PKIASILELGANI-GMNLAALKR-LLPFKHIYGVEINEYAVEKAKAYL-------PNINIIQGSLFD-PFKDNFFDLVLT  111 (204)
T ss_pred             CCCCcEEEEecCC-CHHHHHHHH-hCCCCeEEEEECCHHHHHHHHhhC-------CCCcEEEeeccC-CCCCCCEEEEEE
Confidence            5778999999996 677777777 357899999999999999998852       247888999877 555568999996


Q ss_pred             hhhc-cCChhHHHHHHHHHHhhccCCcEEEEe
Q 042119          209 AALV-GMSKEEKLTILGHIRKYMKDGGILLVR  239 (286)
Q Consensus       209 aalv-g~~~~~k~~vl~~l~~~l~pgg~lv~r  239 (286)
                      ...+ +++.+...++++++.+.+  ++.+++-
T Consensus       112 ~~vL~hl~p~~~~~~l~el~r~~--~~~v~i~  141 (204)
T TIGR03587       112 KGVLIHINPDNLPTAYRELYRCS--NRYILIA  141 (204)
T ss_pred             CChhhhCCHHHHHHHHHHHHhhc--CcEEEEE
Confidence            5543 556667889999999987  3455553

Members of this small clade are methyltransferases of the pfam08241 family and are observed within operons for the biosynthesis of pseudaminic acid, a component of exopolysaccharide and flagellin glycosyl modifications. Notable among these genomes is Pseudomonas fluorescens PfO-1. Possibly one of the two hydroxyl groups of pseudaminic acid, at positions 4 and 8 is converted to a methoxy group by this enzyme

>PRK11805 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional

Probab=99.21  E-value=1.3e-10  Score=108.82  Aligned_cols=108  Identities=20%  Similarity=0.292  Sum_probs=84.1

Q ss_pred             CCEEEEeccCCChhhHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEccccchhhcCCCcceeehhh
Q 042119          131 PKKVAFVGSGPMPLTSIIMAKHHLTSTHFDNFDIDEAANDVARSIVASDAEFEGRMKFLTRDIMEVKEQLGEYDCIFLAA  210 (286)
Q Consensus       131 ~~~VL~IG~G~lp~tai~lA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~g~l~~~i~f~~~D~~~~~~~l~~fD~V~~aa  210 (286)
                      +.+|||+|||+ |.-++.+|+ ..++++|+++|+|+++++.|+++++..| +.++++|+++|+.+... .+.||+|+..-
T Consensus       134 ~~~VLDlG~Gs-G~iai~la~-~~p~~~V~avDis~~al~~A~~n~~~~~-l~~~i~~~~~D~~~~l~-~~~fDlIvsNP  209 (307)
T PRK11805        134 VTRILDLCTGS-GCIAIACAY-AFPDAEVDAVDISPDALAVAEINIERHG-LEDRVTLIESDLFAALP-GRRYDLIVSNP  209 (307)
T ss_pred             CCEEEEEechh-hHHHHHHHH-HCCCCEEEEEeCCHHHHHHHHHHHHHhC-CCCcEEEEECchhhhCC-CCCccEEEECC
Confidence            37999999996 666777887 4688999999999999999999999999 67789999999865332 24699998531


Q ss_pred             ----------------------hccC--ChhHHHHHHHHHHhhccCCcEEEEeecC
Q 042119          211 ----------------------LVGM--SKEEKLTILGHIRKYMKDGGILLVRSAK  242 (286)
Q Consensus       211 ----------------------lvg~--~~~~k~~vl~~l~~~l~pgg~lv~r~~~  242 (286)
                                            +.|.  ..+...+++..+.+.|+|||.+++...+
T Consensus       210 Pyi~~~~~~~l~~~~~~eP~~AL~gg~dGl~~~~~i~~~a~~~L~pgG~l~~E~g~  265 (307)
T PRK11805        210 PYVDAEDMADLPAEYRHEPELALAAGDDGLDLVRRILAEAPDYLTEDGVLVVEVGN  265 (307)
T ss_pred             CCCCccchhhcCHhhccCccceeeCCCchHHHHHHHHHHHHHhcCCCCEEEEEECc
Confidence                                  0000  0123467899999999999999996543

>COG2518 Pcm Protein-L-isoaspartate carboxylmethyltransferase [Posttranslational modification, protein turnover, chaperones]

Probab=99.21  E-value=1.5e-10  Score=102.40  Aligned_cols=126  Identities=17%  Similarity=0.198  Sum_probs=93.6

Q ss_pred             cchhhhhHHHHHHHHhcCCCCCCEEEEeccCCChhhHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEE
Q 042119          110 GNYVKLSKLEYTILSENGVVQPKKVAFVGSGPMPLTSIIMAKHHLTSTHFDNFDIDEAANDVARSIVASDAEFEGRMKFL  189 (286)
Q Consensus       110 ~ny~~l~~~E~~~l~~~~~~~~~~VL~IG~G~lp~tai~lA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~g~l~~~i~f~  189 (286)
                      ..|..--.+....+....++++++||+||||. |+.+..||+   ...+|+.||++++-.+.|+++++.+| + .+|.+.
T Consensus        52 gqtis~P~~vA~m~~~L~~~~g~~VLEIGtGs-GY~aAvla~---l~~~V~siEr~~~L~~~A~~~L~~lg-~-~nV~v~  125 (209)
T COG2518          52 GQTISAPHMVARMLQLLELKPGDRVLEIGTGS-GYQAAVLAR---LVGRVVSIERIEELAEQARRNLETLG-Y-ENVTVR  125 (209)
T ss_pred             CceecCcHHHHHHHHHhCCCCCCeEEEECCCc-hHHHHHHHH---HhCeEEEEEEcHHHHHHHHHHHHHcC-C-CceEEE
Confidence            34444444444455555779999999999995 899999999   44599999999999999999999999 4 459999


Q ss_pred             EccccchhhcCCCcceeehhhhccCChhHHHHHHHHHHhhccCCcEEEEeecCcceeee
Q 042119          190 TRDIMEVKEQLGEYDCIFLAALVGMSKEEKLTILGHIRKYMKDGGILLVRSAKGARAFL  248 (286)
Q Consensus       190 ~~D~~~~~~~l~~fD~V~~aalvg~~~~~k~~vl~~l~~~l~pgg~lv~r~~~g~r~~l  248 (286)
                      ++|...=-.....||.|++.+.+.   +...    .+.+.|+|||++++=-+.+..+.+
T Consensus       126 ~gDG~~G~~~~aPyD~I~Vtaaa~---~vP~----~Ll~QL~~gGrlv~PvG~~~~q~l  177 (209)
T COG2518         126 HGDGSKGWPEEAPYDRIIVTAAAP---EVPE----ALLDQLKPGGRLVIPVGSGPAQRL  177 (209)
T ss_pred             ECCcccCCCCCCCcCEEEEeeccC---CCCH----HHHHhcccCCEEEEEEccCCcEEE
Confidence            999965333445799999877652   1222    356677999999986654434433

>PLN02366 spermidine synthase

Probab=99.21  E-value=1.4e-10  Score=108.69  Aligned_cols=110  Identities=21%  Similarity=0.327  Sum_probs=84.5

Q ss_pred             CCCCEEEEeccCCChhhHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhc--CCCCCCeEEEEccccchhhcC--CCcc
Q 042119          129 VQPKKVAFVGSGPMPLTSIIMAKHHLTSTHFDNFDIDEAANDVARSIVASD--AEFEGRMKFLTRDIMEVKEQL--GEYD  204 (286)
Q Consensus       129 ~~~~~VL~IG~G~lp~tai~lA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~--g~l~~~i~f~~~D~~~~~~~l--~~fD  204 (286)
                      ..+++||+||||. |.++..+++ +.+..+|+.+|+|++.++.|++.+...  +.-..|++++++|+.+.....  +.||
T Consensus        90 ~~pkrVLiIGgG~-G~~~rellk-~~~v~~V~~VEiD~~Vi~~ar~~f~~~~~~~~dpRv~vi~~Da~~~l~~~~~~~yD  167 (308)
T PLN02366         90 PNPKKVLVVGGGD-GGVLREIAR-HSSVEQIDICEIDKMVIDVSKKFFPDLAVGFDDPRVNLHIGDGVEFLKNAPEGTYD  167 (308)
T ss_pred             CCCCeEEEEcCCc-cHHHHHHHh-CCCCCeEEEEECCHHHHHHHHHhhhhhccccCCCceEEEEChHHHHHhhccCCCCC
Confidence            5689999999996 667778887 333479999999999999999987653  211369999999997765443  3699


Q ss_pred             eeehhhhccCChhH---HHHHHHHHHhhccCCcEEEEee
Q 042119          205 CIFLAALVGMSKEE---KLTILGHIRKYMKDGGILLVRS  240 (286)
Q Consensus       205 ~V~~aalvg~~~~~---k~~vl~~l~~~l~pgg~lv~r~  240 (286)
                      +|++++.-......   ..++++.+.+.|+|||+++...
T Consensus       168 vIi~D~~dp~~~~~~L~t~ef~~~~~~~L~pgGvlv~q~  206 (308)
T PLN02366        168 AIIVDSSDPVGPAQELFEKPFFESVARALRPGGVVCTQA  206 (308)
T ss_pred             EEEEcCCCCCCchhhhhHHHHHHHHHHhcCCCcEEEECc
Confidence            99988653221111   3579999999999999998754

>PRK14121 tRNA (guanine-N(7)-)-methyltransferase; Provisional

Probab=99.21  E-value=1.6e-10  Score=111.18  Aligned_cols=109  Identities=18%  Similarity=0.181  Sum_probs=87.6

Q ss_pred             CCCCCEEEEeccCCChhhHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEccccchhh--cCCCcce
Q 042119          128 VVQPKKVAFVGSGPMPLTSIIMAKHHLTSTHFDNFDIDEAANDVARSIVASDAEFEGRMKFLTRDIMEVKE--QLGEYDC  205 (286)
Q Consensus       128 ~~~~~~VL~IG~G~lp~tai~lA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~g~l~~~i~f~~~D~~~~~~--~l~~fD~  205 (286)
                      ...+..+||||||. |.-++.+|+ ..|+..|+|+|+++.+++.|.+.+...| + .++.++.+|+..+..  +.+.+|.
T Consensus       120 ~~~~p~vLEIGcGs-G~~ll~lA~-~~P~~~~iGIEI~~~~i~~a~~ka~~~g-L-~NV~~i~~DA~~ll~~~~~~s~D~  195 (390)
T PRK14121        120 KNQEKILIEIGFGS-GRHLLYQAK-NNPNKLFIGIEIHTPSIEQVLKQIELLN-L-KNLLIINYDARLLLELLPSNSVEK  195 (390)
T ss_pred             CCCCCeEEEEcCcc-cHHHHHHHH-hCCCCCEEEEECCHHHHHHHHHHHHHcC-C-CcEEEEECCHHHhhhhCCCCceeE
Confidence            34567999999996 666778887 4789999999999999999999999999 4 579999999976533  2357999


Q ss_pred             eehhhhccCChhHH-----HHHHHHHHhhccCCcEEEEee
Q 042119          206 IFLAALVGMSKEEK-----LTILGHIRKYMKDGGILLVRS  240 (286)
Q Consensus       206 V~~aalvg~~~~~k-----~~vl~~l~~~l~pgg~lv~r~  240 (286)
                      |++..-..|+...-     ..+++.+++.|+|||.+.+++
T Consensus       196 I~lnFPdPW~KkrHRRlv~~~fL~e~~RvLkpGG~l~l~T  235 (390)
T PRK14121        196 IFVHFPVPWDKKPHRRVISEDFLNEALRVLKPGGTLELRT  235 (390)
T ss_pred             EEEeCCCCccccchhhccHHHHHHHHHHHcCCCcEEEEEE
Confidence            99764344433211     479999999999999999986

>PF13489 Methyltransf_23: Methyltransferase domain; PDB: 3JWJ_A 3JWH_B 2AOV_B 2AOT_A 1JQD_B 2AOX_A 1JQE_A 2AOU_B 2AOW_A 3DLI_C

Probab=99.20  E-value=1.4e-10  Score=96.24  Aligned_cols=98  Identities=18%  Similarity=0.238  Sum_probs=74.8

Q ss_pred             CCCCCEEEEeccCCChhhHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEccccchhhcCCCcceee
Q 042119          128 VVQPKKVAFVGSGPMPLTSIIMAKHHLTSTHFDNFDIDEAANDVARSIVASDAEFEGRMKFLTRDIMEVKEQLGEYDCIF  207 (286)
Q Consensus       128 ~~~~~~VL~IG~G~lp~tai~lA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~g~l~~~i~f~~~D~~~~~~~l~~fD~V~  207 (286)
                      ..++++|||||||. |..+..+++   .|.+|+|+|+++.+++.        .    .+.+...+..+.....+.||+|+
T Consensus        20 ~~~~~~vLDiGcG~-G~~~~~l~~---~~~~~~g~D~~~~~~~~--------~----~~~~~~~~~~~~~~~~~~fD~i~   83 (161)
T PF13489_consen   20 LKPGKRVLDIGCGT-GSFLRALAK---RGFEVTGVDISPQMIEK--------R----NVVFDNFDAQDPPFPDGSFDLII   83 (161)
T ss_dssp             TTTTSEEEEESSTT-SHHHHHHHH---TTSEEEEEESSHHHHHH--------T----TSEEEEEECHTHHCHSSSEEEEE
T ss_pred             cCCCCEEEEEcCCC-CHHHHHHHH---hCCEEEEEECCHHHHhh--------h----hhhhhhhhhhhhhccccchhhHh
Confidence            47889999999996 556667777   57799999999999988        1    34455454444444556899999


Q ss_pred             hhhhccCChhHHHHHHHHHHhhccCCcEEEEeecC
Q 042119          208 LAALVGMSKEEKLTILGHIRKYMKDGGILLVRSAK  242 (286)
Q Consensus       208 ~aalvg~~~~~k~~vl~~l~~~l~pgg~lv~r~~~  242 (286)
                      ....+.+ .++...+++++.+.|||||.+++....
T Consensus        84 ~~~~l~~-~~d~~~~l~~l~~~LkpgG~l~~~~~~  117 (161)
T PF13489_consen   84 CNDVLEH-LPDPEEFLKELSRLLKPGGYLVISDPN  117 (161)
T ss_dssp             EESSGGG-SSHHHHHHHHHHHCEEEEEEEEEEEEB
T ss_pred             hHHHHhh-cccHHHHHHHHHHhcCCCCEEEEEEcC
Confidence            7655432 247889999999999999999998743

...

>TIGR00537 hemK_rel_arch HemK-related putative methylase

Probab=99.20  E-value=1.9e-10  Score=98.90  Aligned_cols=103  Identities=17%  Similarity=0.290  Sum_probs=78.7

Q ss_pred             CCCCEEEEeccCCChhhHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEccccchhhcCCCcceeeh
Q 042119          129 VQPKKVAFVGSGPMPLTSIIMAKHHLTSTHFDNFDIDEAANDVARSIVASDAEFEGRMKFLTRDIMEVKEQLGEYDCIFL  208 (286)
Q Consensus       129 ~~~~~VL~IG~G~lp~tai~lA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~g~l~~~i~f~~~D~~~~~~~l~~fD~V~~  208 (286)
                      .++++||++|||+ |.-++.+++   .+.+|+++|+|+++++.|+++++..+ .  +++++++|+.+..  .+.||+|+.
T Consensus        18 ~~~~~vLdlG~G~-G~~~~~l~~---~~~~v~~vD~s~~~~~~a~~~~~~~~-~--~~~~~~~d~~~~~--~~~fD~Vi~   88 (179)
T TIGR00537        18 LKPDDVLEIGAGT-GLVAIRLKG---KGKCILTTDINPFAVKELRENAKLNN-V--GLDVVMTDLFKGV--RGKFDVILF   88 (179)
T ss_pred             cCCCeEEEeCCCh-hHHHHHHHh---cCCEEEEEECCHHHHHHHHHHHHHcC-C--ceEEEEccccccc--CCcccEEEE
Confidence            4668999999997 555666776   34599999999999999999998877 3  6899999986643  347999986


Q ss_pred             hhhc-cCC-------------------hhHHHHHHHHHHhhccCCcEEEEee
Q 042119          209 AALV-GMS-------------------KEEKLTILGHIRKYMKDGGILLVRS  240 (286)
Q Consensus       209 aalv-g~~-------------------~~~k~~vl~~l~~~l~pgg~lv~r~  240 (286)
                      .... ..+                   .....++++++.++|+|||.+++..
T Consensus        89 n~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Lk~gG~~~~~~  140 (179)
T TIGR00537        89 NPPYLPLEDDLRRGDWLDVAIDGGKDGRKVIDRFLDELPEILKEGGRVQLIQ  140 (179)
T ss_pred             CCCCCCCcchhcccchhhhhhhcCCchHHHHHHHHHhHHHhhCCCCEEEEEE
Confidence            4211 000                   1124578999999999999988865

The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. This model represents an archaeal and eukaryotic protein family that lacks an N-terminal domain found in HemK and its eubacterial homologs. It is found in a single copy in the first six completed archaeal and eukaryotic genomes.

>PRK15001 SAM-dependent 23S ribosomal RNA mG1835 methyltransferase; Provisional

Probab=99.20  E-value=2e-10  Score=110.38  Aligned_cols=108  Identities=13%  Similarity=0.185  Sum_probs=83.2

Q ss_pred             CCCCEEEEeccCCChhhHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCC--CCeEEEEccccchhhcCCCccee
Q 042119          129 VQPKKVAFVGSGPMPLTSIIMAKHHLTSTHFDNFDIDEAANDVARSIVASDAEFE--GRMKFLTRDIMEVKEQLGEYDCI  206 (286)
Q Consensus       129 ~~~~~VL~IG~G~lp~tai~lA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~g~l~--~~i~f~~~D~~~~~~~l~~fD~V  206 (286)
                      ..+.+|||+|||+ |.-++.+++ ..|+++|+++|+|+.|++.|++.++..+ .+  .+++|..+|+.+.. ....||+|
T Consensus       227 ~~~~~VLDLGCGt-Gvi~i~la~-~~P~~~V~~vD~S~~Av~~A~~N~~~n~-~~~~~~v~~~~~D~l~~~-~~~~fDlI  302 (378)
T PRK15001        227 NLEGEIVDLGCGN-GVIGLTLLD-KNPQAKVVFVDESPMAVASSRLNVETNM-PEALDRCEFMINNALSGV-EPFRFNAV  302 (378)
T ss_pred             ccCCeEEEEeccc-cHHHHHHHH-hCCCCEEEEEECCHHHHHHHHHHHHHcC-cccCceEEEEEccccccC-CCCCEEEE
Confidence            3346999999997 566677777 4789999999999999999999998776 33  47999999985432 22479999


Q ss_pred             ehhhh--cc--CChhHHHHHHHHHHhhccCCcEEEEee
Q 042119          207 FLAAL--VG--MSKEEKLTILGHIRKYMKDGGILLVRS  240 (286)
Q Consensus       207 ~~aal--vg--~~~~~k~~vl~~l~~~l~pgg~lv~r~  240 (286)
                      +..--  .+  .+.....+++....++|+|||.+.+..
T Consensus       303 lsNPPfh~~~~~~~~ia~~l~~~a~~~LkpGG~L~iV~  340 (378)
T PRK15001        303 LCNPPFHQQHALTDNVAWEMFHHARRCLKINGELYIVA  340 (378)
T ss_pred             EECcCcccCccCCHHHHHHHHHHHHHhcccCCEEEEEE
Confidence            87421  12  233455689999999999999988864

>COG2264 PrmA Ribosomal protein L11 methylase [Translation, ribosomal structure and biogenesis]

Probab=99.19  E-value=2e-10  Score=106.81  Aligned_cols=139  Identities=25%  Similarity=0.284  Sum_probs=95.9

Q ss_pred             HHHHHHHHhcCCCCCCEEEEeccCCChhhHHHHHhhcCCCcE-EEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEccccc
Q 042119          117 KLEYTILSENGVVQPKKVAFVGSGPMPLTSIIMAKHHLTSTH-FDNFDIDEAANDVARSIVASDAEFEGRMKFLTRDIME  195 (286)
Q Consensus       117 ~~E~~~l~~~~~~~~~~VL~IG~G~lp~tai~lA~~~~~g~~-V~~iDid~~ai~~Ar~~~~~~g~l~~~i~f~~~D~~~  195 (286)
                      ++=++++.+.. .++++|||+|||. |.-||..++   .|+. |+|+|+||-|++.|+++++..| +...++....+..+
T Consensus       150 ~lcL~~Le~~~-~~g~~vlDvGcGS-GILaIAa~k---LGA~~v~g~DiDp~AV~aa~eNa~~N~-v~~~~~~~~~~~~~  223 (300)
T COG2264         150 SLCLEALEKLL-KKGKTVLDVGCGS-GILAIAAAK---LGAKKVVGVDIDPQAVEAARENARLNG-VELLVQAKGFLLLE  223 (300)
T ss_pred             HHHHHHHHHhh-cCCCEEEEecCCh-hHHHHHHHH---cCCceEEEecCCHHHHHHHHHHHHHcC-Cchhhhcccccchh
Confidence            33344444443 6899999999995 888888887   5665 9999999999999999999998 55434444444443


Q ss_pred             hhhcCCCcceeehhhhccCChhHHHHHHHHHHhhccCCcEEEEeecCcceeeecccCCcc-cccCcEEEEEecCc
Q 042119          196 VKEQLGEYDCIFLAALVGMSKEEKLTILGHIRKYMKDGGILLVRSAKGARAFLYPVVVEH-DLLDFEVLSAVHPN  269 (286)
Q Consensus       196 ~~~~l~~fD~V~~aalvg~~~~~k~~vl~~l~~~l~pgg~lv~r~~~g~r~~lyp~v~~~-~l~gf~~~~~~~P~  269 (286)
                      .+.. +.||+|+...+.    +.-..+...+.+.++|||.+++..-=.  .- ...|-.. .-.||++..+.++.
T Consensus       224 ~~~~-~~~DvIVANILA----~vl~~La~~~~~~lkpgg~lIlSGIl~--~q-~~~V~~a~~~~gf~v~~~~~~~  290 (300)
T COG2264         224 VPEN-GPFDVIVANILA----EVLVELAPDIKRLLKPGGRLILSGILE--DQ-AESVAEAYEQAGFEVVEVLERE  290 (300)
T ss_pred             hccc-CcccEEEehhhH----HHHHHHHHHHHHHcCCCceEEEEeehH--hH-HHHHHHHHHhCCCeEeEEEecC
Confidence            3332 479999855543    566789999999999999999986100  00 0000011 11578887777764

>cd02440 AdoMet_MTases S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy)

Probab=99.19  E-value=2.4e-10  Score=85.60  Aligned_cols=102  Identities=22%  Similarity=0.295  Sum_probs=80.2

Q ss_pred             EEEEeccCCChhhHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEccccchhh-cCCCcceeehhhh
Q 042119          133 KVAFVGSGPMPLTSIIMAKHHLTSTHFDNFDIDEAANDVARSIVASDAEFEGRMKFLTRDIMEVKE-QLGEYDCIFLAAL  211 (286)
Q Consensus       133 ~VL~IG~G~lp~tai~lA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~g~l~~~i~f~~~D~~~~~~-~l~~fD~V~~aal  211 (286)
                      +|+++|||++ ..+..+++  .++.+++++|+++++++.+++.....+  ..++++..+|..+... ..++||+|+....
T Consensus         1 ~ildig~G~G-~~~~~~~~--~~~~~~~~~d~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~d~i~~~~~   75 (107)
T cd02440           1 RVLDLGCGTG-ALALALAS--GPGARVTGVDISPVALELARKAAAALL--ADNVEVLKGDAEELPPEADESFDVIISDPP   75 (107)
T ss_pred             CeEEEcCCcc-HHHHHHhc--CCCCEEEEEeCCHHHHHHHHHHHhccc--ccceEEEEcChhhhccccCCceEEEEEccc
Confidence            5899999975 45555665  478899999999999999997544333  4789999999987654 4467999997765


Q ss_pred             ccCChhHHHHHHHHHHhhccCCcEEEEe
Q 042119          212 VGMSKEEKLTILGHIRKYMKDGGILLVR  239 (286)
Q Consensus       212 vg~~~~~k~~vl~~l~~~l~pgg~lv~r  239 (286)
                      .....+....+++.+.+.++|||.+++.
T Consensus        76 ~~~~~~~~~~~l~~~~~~l~~~g~~~~~  103 (107)
T cd02440          76 LHHLVEDLARFLEEARRLLKPGGVLVLT  103 (107)
T ss_pred             eeehhhHHHHHHHHHHHHcCCCCEEEEE
Confidence            4321467789999999999999999875

There are at least five structurally distinct families of AdoMet-MTases, class I being the largest and most diverse. Within this class enzymes can be classified by different substrate specificities (small molecules, lipids, nucleic acids, etc.) and different target atoms for methylation (nitrogen, oxygen, carbon, sulfur, etc.).

>PRK14903 16S rRNA methyltransferase B; Provisional

Probab=99.19  E-value=2e-10  Score=112.37  Aligned_cols=111  Identities=19%  Similarity=0.222  Sum_probs=86.6

Q ss_pred             CCCCCCEEEEeccCCChhhHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEccccchhhc-CCCcce
Q 042119          127 GVVQPKKVAFVGSGPMPLTSIIMAKHHLTSTHFDNFDIDEAANDVARSIVASDAEFEGRMKFLTRDIMEVKEQ-LGEYDC  205 (286)
Q Consensus       127 ~~~~~~~VL~IG~G~lp~tai~lA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~g~l~~~i~f~~~D~~~~~~~-l~~fD~  205 (286)
                      .+.++.+|||+||||+|.|.. +|....++++|+++|+++.+++.+++++++.| + ++++++++|+.+++.. .+.||.
T Consensus       234 ~~~~g~~VLD~cagpGgkt~~-la~~~~~~g~V~a~Dis~~rl~~~~~n~~r~g-~-~~v~~~~~Da~~l~~~~~~~fD~  310 (431)
T PRK14903        234 ELEPGLRVLDTCAAPGGKTTA-IAELMKDQGKILAVDISREKIQLVEKHAKRLK-L-SSIEIKIADAERLTEYVQDTFDR  310 (431)
T ss_pred             CCCCCCEEEEeCCCccHHHHH-HHHHcCCCCEEEEEECCHHHHHHHHHHHHHcC-C-CeEEEEECchhhhhhhhhccCCE
Confidence            467889999999999877654 45533357899999999999999999999999 4 4699999999876522 246999


Q ss_pred             eehhhh---ccC---Ch---------------hHHHHHHHHHHhhccCCcEEEEee
Q 042119          206 IFLAAL---VGM---SK---------------EEKLTILGHIRKYMKDGGILLVRS  240 (286)
Q Consensus       206 V~~aal---vg~---~~---------------~~k~~vl~~l~~~l~pgg~lv~r~  240 (286)
                      |++++-   .|.   ++               ....++|.+..+.|||||.+++.+
T Consensus       311 Vl~DaPCsg~G~~~~~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~LkpGG~LvYsT  366 (431)
T PRK14903        311 ILVDAPCTSLGTARNHPEVLRRVNKEDFKKLSEIQLRIVSQAWKLLEKGGILLYST  366 (431)
T ss_pred             EEECCCCCCCccccCChHHHHhCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEE
Confidence            998542   222   11               123578999999999999999975

>PRK14967 putative methyltransferase; Provisional

Probab=99.18  E-value=2.9e-10  Score=101.38  Aligned_cols=110  Identities=15%  Similarity=0.158  Sum_probs=81.6

Q ss_pred             HHhcCCCCCCEEEEeccCCChhhHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEccccchhhcCCC
Q 042119          123 LSENGVVQPKKVAFVGSGPMPLTSIIMAKHHLTSTHFDNFDIDEAANDVARSIVASDAEFEGRMKFLTRDIMEVKEQLGE  202 (286)
Q Consensus       123 l~~~~~~~~~~VL~IG~G~lp~tai~lA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~g~l~~~i~f~~~D~~~~~~~l~~  202 (286)
                      +......++.+|||+|||+ |.-++.+++  ....+|+++|+|+.+++.|+++++..| +  +++++++|..+.. ..+.
T Consensus        29 l~~~~~~~~~~vLDlGcG~-G~~~~~la~--~~~~~v~~vD~s~~~l~~a~~n~~~~~-~--~~~~~~~d~~~~~-~~~~  101 (223)
T PRK14967         29 LAAEGLGPGRRVLDLCTGS-GALAVAAAA--AGAGSVTAVDISRRAVRSARLNALLAG-V--DVDVRRGDWARAV-EFRP  101 (223)
T ss_pred             HHhcccCCCCeEEEecCCH-HHHHHHHHH--cCCCeEEEEECCHHHHHHHHHHHHHhC-C--eeEEEECchhhhc-cCCC
Confidence            3344557788999999997 666777887  233499999999999999999999888 3  6899999986643 2357


Q ss_pred             cceeehhhh-ccCC-------------------hhHHHHHHHHHHhhccCCcEEEEe
Q 042119          203 YDCIFLAAL-VGMS-------------------KEEKLTILGHIRKYMKDGGILLVR  239 (286)
Q Consensus       203 fD~V~~aal-vg~~-------------------~~~k~~vl~~l~~~l~pgg~lv~r  239 (286)
                      ||+|+...- +...                   ...-..+++++.+.|+|||++++-
T Consensus       102 fD~Vi~npPy~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~Lk~gG~l~~~  158 (223)
T PRK14967        102 FDVVVSNPPYVPAPPDAPPSRGPARAWDAGPDGRAVLDRLCDAAPALLAPGGSLLLV  158 (223)
T ss_pred             eeEEEECCCCCCCCcccccccChhHhhhCCCcHHHHHHHHHHHHHHhcCCCcEEEEE
Confidence            999986521 1000                   011345788999999999999873

>PRK14901 16S rRNA methyltransferase B; Provisional

Probab=99.18  E-value=2.3e-10  Score=111.90  Aligned_cols=111  Identities=17%  Similarity=0.157  Sum_probs=85.5

Q ss_pred             CCCCCCEEEEeccCCChhhHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEccccchhh----cCCC
Q 042119          127 GVVQPKKVAFVGSGPMPLTSIIMAKHHLTSTHFDNFDIDEAANDVARSIVASDAEFEGRMKFLTRDIMEVKE----QLGE  202 (286)
Q Consensus       127 ~~~~~~~VL~IG~G~lp~tai~lA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~g~l~~~i~f~~~D~~~~~~----~l~~  202 (286)
                      .+.++.+|||+||||++.|. .+|+.....++|+++|+++.+++.+++++++.| + ++|+++++|+.+.+.    ..+.
T Consensus       249 ~~~~g~~VLDl~ag~G~kt~-~la~~~~~~g~v~a~D~~~~rl~~~~~n~~r~g-~-~~v~~~~~D~~~~~~~~~~~~~~  325 (434)
T PRK14901        249 DPQPGEVILDACAAPGGKTT-HIAELMGDQGEIWAVDRSASRLKKLQENAQRLG-L-KSIKILAADSRNLLELKPQWRGY  325 (434)
T ss_pred             CCCCcCEEEEeCCCCchhHH-HHHHHhCCCceEEEEcCCHHHHHHHHHHHHHcC-C-CeEEEEeCChhhccccccccccc
Confidence            45788999999999977764 455533345799999999999999999999999 4 469999999987652    2247


Q ss_pred             cceeehhhh---ccC---Chh---------------HHHHHHHHHHhhccCCcEEEEee
Q 042119          203 YDCIFLAAL---VGM---SKE---------------EKLTILGHIRKYMKDGGILLVRS  240 (286)
Q Consensus       203 fD~V~~aal---vg~---~~~---------------~k~~vl~~l~~~l~pgg~lv~r~  240 (286)
                      ||.|++++-   .|.   .++               ...+++++..+.|||||+|++.+
T Consensus       326 fD~Vl~DaPCSg~G~~~r~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~lkpgG~lvyst  384 (434)
T PRK14901        326 FDRILLDAPCSGLGTLHRHPDARWRQTPEKIQELAPLQAELLESLAPLLKPGGTLVYAT  384 (434)
T ss_pred             CCEEEEeCCCCcccccccCcchhhhCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEe
Confidence            999998641   111   111               13589999999999999999865

>PRK14902 16S rRNA methyltransferase B; Provisional

Probab=99.18  E-value=2.5e-10  Score=111.92  Aligned_cols=111  Identities=23%  Similarity=0.288  Sum_probs=84.9

Q ss_pred             CCCCCCEEEEeccCCChhhHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEccccchhhcC-CCcce
Q 042119          127 GVVQPKKVAFVGSGPMPLTSIIMAKHHLTSTHFDNFDIDEAANDVARSIVASDAEFEGRMKFLTRDIMEVKEQL-GEYDC  205 (286)
Q Consensus       127 ~~~~~~~VL~IG~G~lp~tai~lA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~g~l~~~i~f~~~D~~~~~~~l-~~fD~  205 (286)
                      .+.++.+|||+||||++.| +.+|+...++++|+++|+++++++.+++++++.| +. +++++++|+.+....+ +.||+
T Consensus       247 ~~~~g~~VLDlgaG~G~~t-~~la~~~~~~~~v~avDi~~~~l~~~~~n~~~~g-~~-~v~~~~~D~~~~~~~~~~~fD~  323 (444)
T PRK14902        247 DPKGGDTVLDACAAPGGKT-THIAELLKNTGKVVALDIHEHKLKLIEENAKRLG-LT-NIETKALDARKVHEKFAEKFDK  323 (444)
T ss_pred             CCCCCCEEEEeCCCCCHHH-HHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcC-CC-eEEEEeCCcccccchhcccCCE
Confidence            4567899999999997665 4566533357899999999999999999999999 54 5999999998764333 47999


Q ss_pred             eehhhh---ccC-----------Chh-------HHHHHHHHHHhhccCCcEEEEee
Q 042119          206 IFLAAL---VGM-----------SKE-------EKLTILGHIRKYMKDGGILLVRS  240 (286)
Q Consensus       206 V~~aal---vg~-----------~~~-------~k~~vl~~l~~~l~pgg~lv~r~  240 (286)
                      |++++-   .|.           +..       ...+++++..+.|||||.+++.+
T Consensus       324 Vl~D~Pcsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~LkpGG~lvyst  379 (444)
T PRK14902        324 ILVDAPCSGLGVIRRKPDIKYNKTKEDIESLQEIQLEILESVAQYLKKGGILVYST  379 (444)
T ss_pred             EEEcCCCCCCeeeccCcchhhcCCHHHHHHHHHHHHHHHHHHHHHcCCCCEEEEEc
Confidence            997642   111           000       12468999999999999999754

>TIGR00563 rsmB ribosomal RNA small subunit methyltransferase RsmB

Probab=99.18  E-value=2.7e-10  Score=111.19  Aligned_cols=111  Identities=16%  Similarity=0.148  Sum_probs=83.9

Q ss_pred             CCCCCCEEEEeccCCChhhHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEccccchhh--cCCCcc
Q 042119          127 GVVQPKKVAFVGSGPMPLTSIIMAKHHLTSTHFDNFDIDEAANDVARSIVASDAEFEGRMKFLTRDIMEVKE--QLGEYD  204 (286)
Q Consensus       127 ~~~~~~~VL~IG~G~lp~tai~lA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~g~l~~~i~f~~~D~~~~~~--~l~~fD  204 (286)
                      .+.++.+|||+||||++.|.. +|+ ..++++|+++|+++++++.+++++++.| +..++.+..+|..+...  ..+.||
T Consensus       235 ~~~~g~~VLDlcag~G~kt~~-la~-~~~~~~v~a~D~~~~~l~~~~~n~~r~g-~~~~v~~~~~d~~~~~~~~~~~~fD  311 (426)
T TIGR00563       235 APQNEETILDACAAPGGKTTH-ILE-LAPQAQVVALDIHEHRLKRVYENLKRLG-LTIKAETKDGDGRGPSQWAENEQFD  311 (426)
T ss_pred             CCCCCCeEEEeCCCccHHHHH-HHH-HcCCCeEEEEeCCHHHHHHHHHHHHHcC-CCeEEEEeccccccccccccccccC
Confidence            567889999999999777654 555 2457899999999999999999999999 55445557788765433  235799


Q ss_pred             eeehhhh---ccC---Chh---------------HHHHHHHHHHhhccCCcEEEEee
Q 042119          205 CIFLAAL---VGM---SKE---------------EKLTILGHIRKYMKDGGILLVRS  240 (286)
Q Consensus       205 ~V~~aal---vg~---~~~---------------~k~~vl~~l~~~l~pgg~lv~r~  240 (286)
                      .|++++-   .|.   .++               ...++|.+..+.|||||.+++.+
T Consensus       312 ~VllDaPcSg~G~~~~~p~~~~~~~~~~~~~l~~lQ~~lL~~a~~~LkpgG~lvyst  368 (426)
T TIGR00563       312 RILLDAPCSATGVIRRHPDIKWLRKPRDIAELAELQSEILDAIWPLLKTGGTLVYAT  368 (426)
T ss_pred             EEEEcCCCCCCcccccCcchhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEe
Confidence            9997642   121   111               13579999999999999999974

The seed alignment is built from bacterial sequences only. Eukaryotic homologs include Nop2, a protein required for processing pre-rRNA, that is likely also a rRNA methyltransferase, although the fine specificity may differ. Cutoff scores are set to avoid treating archaeal and eukaroytic homologs automatically as functionally equivalent, although they may have very similar roles.

>PRK05134 bifunctional 3-demethylubiquinone-9 3-methyltransferase/ 2-octaprenyl-6-hydroxy phenol methylase; Provisional

Probab=99.18  E-value=4.1e-10  Score=100.40  Aligned_cols=105  Identities=19%  Similarity=0.282  Sum_probs=84.5

Q ss_pred             CCCCCEEEEeccCCChhhHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEccccchhhc-CCCccee
Q 042119          128 VVQPKKVAFVGSGPMPLTSIIMAKHHLTSTHFDNFDIDEAANDVARSIVASDAEFEGRMKFLTRDIMEVKEQ-LGEYDCI  206 (286)
Q Consensus       128 ~~~~~~VL~IG~G~lp~tai~lA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~g~l~~~i~f~~~D~~~~~~~-l~~fD~V  206 (286)
                      ..++.+||+||||+ |..+..+++   .+++|+++|+++++++.|++.+...+   .+++++.+|+.+.+.. .+.||+|
T Consensus        46 ~~~~~~vLdiG~G~-G~~~~~l~~---~~~~v~~iD~s~~~~~~a~~~~~~~~---~~~~~~~~~~~~~~~~~~~~fD~I  118 (233)
T PRK05134         46 GLFGKRVLDVGCGG-GILSESMAR---LGADVTGIDASEENIEVARLHALESG---LKIDYRQTTAEELAAEHPGQFDVV  118 (233)
T ss_pred             CCCCCeEEEeCCCC-CHHHHHHHH---cCCeEEEEcCCHHHHHHHHHHHHHcC---CceEEEecCHHHhhhhcCCCccEE
Confidence            45788999999997 556677777   57899999999999999999988777   3689999998776532 2579999


Q ss_pred             ehhhhccCChhHHHHHHHHHHhhccCCcEEEEee
Q 042119          207 FLAALVGMSKEEKLTILGHIRKYMKDGGILLVRS  240 (286)
Q Consensus       207 ~~aalvg~~~~~k~~vl~~l~~~l~pgg~lv~r~  240 (286)
                      +....+.. ..+...+++.+.+.|+|||.+++..
T Consensus       119 i~~~~l~~-~~~~~~~l~~~~~~L~~gG~l~v~~  151 (233)
T PRK05134        119 TCMEMLEH-VPDPASFVRACAKLVKPGGLVFFST  151 (233)
T ss_pred             EEhhHhhc-cCCHHHHHHHHHHHcCCCcEEEEEe
Confidence            87655432 2456689999999999999998864

>TIGR00536 hemK_fam HemK family putative methylases

Probab=99.17  E-value=3.5e-10  Score=104.65  Aligned_cols=106  Identities=22%  Similarity=0.288  Sum_probs=83.1

Q ss_pred             CEEEEeccCCChhhHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEccccchhhcCCCcceeehh--
Q 042119          132 KKVAFVGSGPMPLTSIIMAKHHLTSTHFDNFDIDEAANDVARSIVASDAEFEGRMKFLTRDIMEVKEQLGEYDCIFLA--  209 (286)
Q Consensus       132 ~~VL~IG~G~lp~tai~lA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~g~l~~~i~f~~~D~~~~~~~l~~fD~V~~a--  209 (286)
                      .+|||+|||+ |.-++.+++ ..++++|+++|+|+++++.|+++++..| +.++++|+++|..+... -..||+|+..  
T Consensus       116 ~~vLDlG~Gs-G~i~l~la~-~~~~~~v~avDis~~al~~a~~n~~~~~-~~~~v~~~~~d~~~~~~-~~~fDlIvsNPP  191 (284)
T TIGR00536       116 LHILDLGTGS-GCIALALAY-EFPNAEVIAVDISPDALAVAEENAEKNQ-LEHRVEFIQSNLFEPLA-GQKIDIIVSNPP  191 (284)
T ss_pred             CEEEEEeccH-hHHHHHHHH-HCCCCEEEEEECCHHHHHHHHHHHHHcC-CCCcEEEEECchhccCc-CCCccEEEECCC
Confidence            7999999996 667778887 4678999999999999999999999999 66789999999865321 1269998753  


Q ss_pred             --------------------hhccC--ChhHHHHHHHHHHhhccCCcEEEEeec
Q 042119          210 --------------------ALVGM--SKEEKLTILGHIRKYMKDGGILLVRSA  241 (286)
Q Consensus       210 --------------------alvg~--~~~~k~~vl~~l~~~l~pgg~lv~r~~  241 (286)
                                          ++.|.  .......++++..++|+|||.+++-.+
T Consensus       192 yi~~~~~~~~~~~~~~eP~~AL~gg~dgl~~~~~ii~~a~~~L~~gG~l~~e~g  245 (284)
T TIGR00536       192 YIDEEDLADLPNVVRFEPLLALVGGDDGLNILRQIIELAPDYLKPNGFLVCEIG  245 (284)
T ss_pred             CCCcchhhcCCcccccCcHHHhcCCCcHHHHHHHHHHHHHHhccCCCEEEEEEC
Confidence                                01110  012456789999999999999998764

The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. Both E. coli and H. influenzae have two members rather than one. The members from the Mycoplasmas have an additional C-terminal domain.

>PF06325 PrmA: Ribosomal protein L11 methyltransferase (PrmA); InterPro: IPR010456 This family consists of several Ribosomal protein L11 methyltransferase sequences

Probab=99.17  E-value=1.6e-10  Score=107.70  Aligned_cols=113  Identities=26%  Similarity=0.358  Sum_probs=83.1

Q ss_pred             hhhHHHHHHHHhcCCCCCCEEEEeccCCChhhHHHHHhhcCCCc-EEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEcc
Q 042119          114 KLSKLEYTILSENGVVQPKKVAFVGSGPMPLTSIIMAKHHLTST-HFDNFDIDEAANDVARSIVASDAEFEGRMKFLTRD  192 (286)
Q Consensus       114 ~l~~~E~~~l~~~~~~~~~~VL~IG~G~lp~tai~lA~~~~~g~-~V~~iDid~~ai~~Ar~~~~~~g~l~~~i~f~~~D  192 (286)
                      .-+++=..++.+. ..++++|||||||+ |.-++.-++   .|+ +|+++|+||.|++.|+++++..| +++++.+.  .
T Consensus       146 ~TT~lcl~~l~~~-~~~g~~vLDvG~GS-GILaiaA~k---lGA~~v~a~DiDp~Av~~a~~N~~~N~-~~~~~~v~--~  217 (295)
T PF06325_consen  146 PTTRLCLELLEKY-VKPGKRVLDVGCGS-GILAIAAAK---LGAKKVVAIDIDPLAVEAARENAELNG-VEDRIEVS--L  217 (295)
T ss_dssp             HHHHHHHHHHHHH-SSTTSEEEEES-TT-SHHHHHHHH---TTBSEEEEEESSCHHHHHHHHHHHHTT--TTCEEES--C
T ss_pred             HHHHHHHHHHHHh-ccCCCEEEEeCCcH-HHHHHHHHH---cCCCeEEEecCCHHHHHHHHHHHHHcC-CCeeEEEE--E
Confidence            3345545555554 47789999999996 888888777   455 79999999999999999999999 78887663  2


Q ss_pred             ccchhhcCCCcceeehhhhccCChhHHHHHHHHHHhhccCCcEEEEee
Q 042119          193 IMEVKEQLGEYDCIFLAALVGMSKEEKLTILGHIRKYMKDGGILLVRS  240 (286)
Q Consensus       193 ~~~~~~~l~~fD~V~~aalvg~~~~~k~~vl~~l~~~l~pgg~lv~r~  240 (286)
                      ..+...  ..||+|+...+.    ..-..+...+.++|+|||.+++..
T Consensus       218 ~~~~~~--~~~dlvvANI~~----~vL~~l~~~~~~~l~~~G~lIlSG  259 (295)
T PF06325_consen  218 SEDLVE--GKFDLVVANILA----DVLLELAPDIASLLKPGGYLILSG  259 (295)
T ss_dssp             TSCTCC--S-EEEEEEES-H----HHHHHHHHHCHHHEEEEEEEEEEE
T ss_pred             eccccc--ccCCEEEECCCH----HHHHHHHHHHHHhhCCCCEEEEcc
Confidence            222222  679999844332    566678889999999999999965

Its genetic determinant is prmA, which forms a bifunctional operon with the downstream panF gene []. The role of L11 methylation in ribosome function is, as yet, unknown. Deletion of the prmA gene in Escherichia coli showed no obvious effect [] except for the production of undermethylated forms of L11 []. Methylation is the most common post-transcriptional modification to ribosomal proteins in all organisms. PrmA is the only bacterial enzyme that catalyses the methylation of a ribosomal protein [].; GO: 0008276 protein methyltransferase activity, 0006479 protein methylation, 0005737 cytoplasm; PDB: 3GRZ_B 1F3L_A 2NXJ_B 3CJT_I 3CJQ_G 2NXE_A 2NXC_A 2ZBP_A 3EGV_A 3CJS_A ....

>PRK14904 16S rRNA methyltransferase B; Provisional

Probab=99.16  E-value=4.6e-10  Score=110.13  Aligned_cols=110  Identities=17%  Similarity=0.176  Sum_probs=84.8

Q ss_pred             CCCCCCEEEEeccCCChhhHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEccccchhhcCCCccee
Q 042119          127 GVVQPKKVAFVGSGPMPLTSIIMAKHHLTSTHFDNFDIDEAANDVARSIVASDAEFEGRMKFLTRDIMEVKEQLGEYDCI  206 (286)
Q Consensus       127 ~~~~~~~VL~IG~G~lp~tai~lA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~g~l~~~i~f~~~D~~~~~~~l~~fD~V  206 (286)
                      .+.++++|||+||||++.| +.+|+....+++|+++|+++++++.+++.+++.| + ++|+++++|+.+... ...||.|
T Consensus       247 ~~~~g~~VLDlgaG~G~kt-~~la~~~~~~~~V~avD~s~~~l~~~~~~~~~~g-~-~~v~~~~~Da~~~~~-~~~fD~V  322 (445)
T PRK14904        247 NPQPGSTVLDLCAAPGGKS-TFMAELMQNRGQITAVDRYPQKLEKIRSHASALG-I-TIIETIEGDARSFSP-EEQPDAI  322 (445)
T ss_pred             CCCCCCEEEEECCCCCHHH-HHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHhC-C-CeEEEEeCccccccc-CCCCCEE
Confidence            4567899999999997665 4555533346799999999999999999999999 4 579999999987653 2479999


Q ss_pred             ehhhh---ccC-----------Ch-------hHHHHHHHHHHhhccCCcEEEEee
Q 042119          207 FLAAL---VGM-----------SK-------EEKLTILGHIRKYMKDGGILLVRS  240 (286)
Q Consensus       207 ~~aal---vg~-----------~~-------~~k~~vl~~l~~~l~pgg~lv~r~  240 (286)
                      ++++-   .|+           +.       ....++|.++.+.++|||++++.+
T Consensus       323 l~D~Pcsg~g~~~r~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~lkpgG~lvyst  377 (445)
T PRK14904        323 LLDAPCTGTGVLGRRAELRWKLTPEKLAELVGLQAELLDHAASLLKPGGVLVYAT  377 (445)
T ss_pred             EEcCCCCCcchhhcCcchhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEe
Confidence            97531   111           11       113468999999999999999975

>TIGR03534 RF_mod_PrmC protein-(glutamine-N5) methyltransferase, release factor-specific

Probab=99.16  E-value=4.9e-10  Score=100.44  Aligned_cols=108  Identities=25%  Similarity=0.322  Sum_probs=82.7

Q ss_pred             CCCCEEEEeccCCChhhHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEccccchhhcCCCcceeeh
Q 042119          129 VQPKKVAFVGSGPMPLTSIIMAKHHLTSTHFDNFDIDEAANDVARSIVASDAEFEGRMKFLTRDIMEVKEQLGEYDCIFL  208 (286)
Q Consensus       129 ~~~~~VL~IG~G~lp~tai~lA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~g~l~~~i~f~~~D~~~~~~~l~~fD~V~~  208 (286)
                      ..+.+|||+|||+ |..++.+++ ..++.+|+++|+|+.+++.|++.+...| + ++++++++|+.+. ...+.||+|+.
T Consensus        86 ~~~~~ilDig~G~-G~~~~~l~~-~~~~~~v~~iD~~~~~~~~a~~~~~~~~-~-~~~~~~~~d~~~~-~~~~~fD~Vi~  160 (251)
T TIGR03534        86 KGPLRVLDLGTGS-GAIALALAK-ERPDARVTAVDISPEALAVARKNAARLG-L-DNVTFLQSDWFEP-LPGGKFDLIVS  160 (251)
T ss_pred             cCCCeEEEEeCcH-hHHHHHHHH-HCCCCEEEEEECCHHHHHHHHHHHHHcC-C-CeEEEEECchhcc-CcCCceeEEEE
Confidence            4567999999996 666777777 4678999999999999999999999988 4 4799999998763 23357999985


Q ss_pred             hhh-c------cCChh------------------HHHHHHHHHHhhccCCcEEEEeec
Q 042119          209 AAL-V------GMSKE------------------EKLTILGHIRKYMKDGGILLVRSA  241 (286)
Q Consensus       209 aal-v------g~~~~------------------~k~~vl~~l~~~l~pgg~lv~r~~  241 (286)
                      .-- +      .+..+                  ....+++++.+.|+|||.+++...
T Consensus       161 npPy~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~i~~~~~~L~~gG~~~~~~~  218 (251)
T TIGR03534       161 NPPYIPEADIHLLDPEVRFHEPRLALFGGEDGLDFYRRIIAQAPRLLKPGGWLLLEIG  218 (251)
T ss_pred             CCCCCchhhhhhcChhhhhcCCHHHHcCCCcHHHHHHHHHHHHHHhcccCCEEEEEEC
Confidence            210 0      01111                  124688999999999999998653

Members of this protein family are HemK (PrmC), a protein once thought to be involved in heme biosynthesis but now recognized to be a protein-glutamine methyltransferase that modifies the peptide chain release factors. All members of the seed alignment are encoded next to the release factor 1 gene (prfA) and confirmed by phylogenetic analysis. SIMBAL analysis (manuscript in prep.) shows the motif [LIV]PRx[DE]TE (in Escherichia coli, IPRPDTE) confers specificity for the release factors rather than for ribosomal protein L3.

>TIGR01177 conserved hypothetical protein TIGR01177

Probab=99.16  E-value=4.8e-10  Score=105.82  Aligned_cols=110  Identities=15%  Similarity=0.034  Sum_probs=86.3

Q ss_pred             CCCCCCEEEEeccCCChhhHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEccccchhhcCCCccee
Q 042119          127 GVVQPKKVAFVGSGPMPLTSIIMAKHHLTSTHFDNFDIDEAANDVARSIVASDAEFEGRMKFLTRDIMEVKEQLGEYDCI  206 (286)
Q Consensus       127 ~~~~~~~VL~IG~G~lp~tai~lA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~g~l~~~i~f~~~D~~~~~~~l~~fD~V  206 (286)
                      ...++++|+|+|||++++ ++..+.   .|++|+|+|+|+.+++.|+++++..| +.+ +++.++|+.+++...+.||+|
T Consensus       179 ~~~~g~~vLDp~cGtG~~-lieaa~---~~~~v~g~Di~~~~~~~a~~nl~~~g-~~~-i~~~~~D~~~l~~~~~~~D~I  252 (329)
T TIGR01177       179 RVTEGDRVLDPFCGTGGF-LIEAGL---MGAKVIGCDIDWKMVAGARINLEHYG-IED-FFVKRGDATKLPLSSESVDAI  252 (329)
T ss_pred             CCCCcCEEEECCCCCCHH-HHHHHH---hCCeEEEEcCCHHHHHHHHHHHHHhC-CCC-CeEEecchhcCCcccCCCCEE
Confidence            457889999999998554 455544   68999999999999999999999999 554 999999998876654679999


Q ss_pred             ehhhhc-------cC-ChhHHHHHHHHHHhhccCCcEEEEeecC
Q 042119          207 FLAALV-------GM-SKEEKLTILGHIRKYMKDGGILLVRSAK  242 (286)
Q Consensus       207 ~~aalv-------g~-~~~~k~~vl~~l~~~l~pgg~lv~r~~~  242 (286)
                      +.+.--       +. ......++++++.+.|+|||.+++-..+
T Consensus       253 v~dPPyg~~~~~~~~~~~~l~~~~l~~~~r~Lk~gG~lv~~~~~  296 (329)
T TIGR01177       253 ATDPPYGRSTTAAGDGLESLYERSLEEFHEVLKSEGWIVYAVPT  296 (329)
T ss_pred             EECCCCcCcccccCCchHHHHHHHHHHHHHHccCCcEEEEEEcC
Confidence            875211       11 1123578999999999999998887643

This family is found exclusively in the Archaea.

>PRK14968 putative methyltransferase; Provisional

Probab=99.16  E-value=5.3e-10  Score=95.67  Aligned_cols=106  Identities=21%  Similarity=0.342  Sum_probs=80.9

Q ss_pred             CCCCEEEEeccCCChhhHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCC-eEEEEccccchhhcCCCcceee
Q 042119          129 VQPKKVAFVGSGPMPLTSIIMAKHHLTSTHFDNFDIDEAANDVARSIVASDAEFEGR-MKFLTRDIMEVKEQLGEYDCIF  207 (286)
Q Consensus       129 ~~~~~VL~IG~G~lp~tai~lA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~g~l~~~-i~f~~~D~~~~~~~l~~fD~V~  207 (286)
                      .++++||++|||. |..+..+++   .+.+|+++|+|+++++.+++.++..+ +.++ +.++++|..+...+ ..||+|+
T Consensus        22 ~~~~~vLd~G~G~-G~~~~~l~~---~~~~v~~~D~s~~~~~~a~~~~~~~~-~~~~~~~~~~~d~~~~~~~-~~~d~vi   95 (188)
T PRK14968         22 KKGDRVLEVGTGS-GIVAIVAAK---NGKKVVGVDINPYAVECAKCNAKLNN-IRNNGVEVIRSDLFEPFRG-DKFDVIL   95 (188)
T ss_pred             cCCCEEEEEcccc-CHHHHHHHh---hcceEEEEECCHHHHHHHHHHHHHcC-CCCcceEEEeccccccccc-cCceEEE
Confidence            5778999999996 677888887   38999999999999999999999888 5444 99999998663322 2699997


Q ss_pred             hhhhcc-------------------C-ChhHHHHHHHHHHhhccCCcEEEEee
Q 042119          208 LAALVG-------------------M-SKEEKLTILGHIRKYMKDGGILLVRS  240 (286)
Q Consensus       208 ~aalvg-------------------~-~~~~k~~vl~~l~~~l~pgg~lv~r~  240 (286)
                      ...-..                   . .......+++++.+.|+|||.+++-.
T Consensus        96 ~n~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~Lk~gG~~~~~~  148 (188)
T PRK14968         96 FNPPYLPTEEEEEWDDWLNYALSGGKDGREVIDRFLDEVGRYLKPGGRILLLQ  148 (188)
T ss_pred             ECCCcCCCCchhhhhhhhhhhhccCcChHHHHHHHHHHHHHhcCCCeEEEEEE
Confidence            542110                   0 01224568999999999999877653

>PRK10901 16S rRNA methyltransferase B; Provisional

Probab=99.16  E-value=5.7e-10  Score=108.93  Aligned_cols=109  Identities=18%  Similarity=0.217  Sum_probs=83.5

Q ss_pred             CCCCCCEEEEeccCCChhhHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEccccchhh--cCCCcc
Q 042119          127 GVVQPKKVAFVGSGPMPLTSIIMAKHHLTSTHFDNFDIDEAANDVARSIVASDAEFEGRMKFLTRDIMEVKE--QLGEYD  204 (286)
Q Consensus       127 ~~~~~~~VL~IG~G~lp~tai~lA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~g~l~~~i~f~~~D~~~~~~--~l~~fD  204 (286)
                      .+.++.+|||+||||++.|. .+++ ..++++|+++|+++++++.+++.+++.| +  +++++++|+.+...  ..+.||
T Consensus       241 ~~~~g~~VLDlgaG~G~~t~-~la~-~~~~~~v~a~D~s~~~l~~~~~n~~~~g-~--~~~~~~~D~~~~~~~~~~~~fD  315 (427)
T PRK10901        241 APQNGERVLDACAAPGGKTA-HILE-LAPQAQVVALDIDAQRLERVRENLQRLG-L--KATVIVGDARDPAQWWDGQPFD  315 (427)
T ss_pred             CCCCCCEEEEeCCCCChHHH-HHHH-HcCCCEEEEEeCCHHHHHHHHHHHHHcC-C--CeEEEEcCcccchhhcccCCCC
Confidence            46788999999999977665 4555 2456899999999999999999999999 4  37899999976532  124699


Q ss_pred             eeehhhhc---cC-----------Ch-------hHHHHHHHHHHhhccCCcEEEEee
Q 042119          205 CIFLAALV---GM-----------SK-------EEKLTILGHIRKYMKDGGILLVRS  240 (286)
Q Consensus       205 ~V~~aalv---g~-----------~~-------~~k~~vl~~l~~~l~pgg~lv~r~  240 (286)
                      .|++++--   |.           ..       ....+++++..+.|+|||.+++.+
T Consensus       316 ~Vl~D~Pcs~~G~~~~~p~~~~~~~~~~l~~l~~~q~~iL~~a~~~LkpGG~lvyst  372 (427)
T PRK10901        316 RILLDAPCSATGVIRRHPDIKWLRRPEDIAALAALQSEILDALWPLLKPGGTLLYAT  372 (427)
T ss_pred             EEEECCCCCcccccccCccccccCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEe
Confidence            99965421   10           11       123479999999999999999865

>PRK01581 speE spermidine synthase; Validated

Probab=99.15  E-value=3.2e-10  Score=108.10  Aligned_cols=111  Identities=23%  Similarity=0.325  Sum_probs=83.0

Q ss_pred             CCCCEEEEeccCCChhhHHHHHhhcCCCcEEEEEeCChHHHHHHHHHH-----HhcCCCCCCeEEEEccccchhhcC-CC
Q 042119          129 VQPKKVAFVGSGPMPLTSIIMAKHHLTSTHFDNFDIDEAANDVARSIV-----ASDAEFEGRMKFLTRDIMEVKEQL-GE  202 (286)
Q Consensus       129 ~~~~~VL~IG~G~lp~tai~lA~~~~~g~~V~~iDid~~ai~~Ar~~~-----~~~g~l~~~i~f~~~D~~~~~~~l-~~  202 (286)
                      ..|++||+|||| .|.++..+.+ +.+..+|+++|+|+++++.|++..     .+.+.-..|++++.+|+.+..... +.
T Consensus       149 ~~PkrVLIIGgG-dG~tlrelLk-~~~v~~It~VEIDpeVIelAr~~~~L~~~~~~~~~DpRV~vvi~Da~~fL~~~~~~  226 (374)
T PRK01581        149 IDPKRVLILGGG-DGLALREVLK-YETVLHVDLVDLDGSMINMARNVPELVSLNKSAFFDNRVNVHVCDAKEFLSSPSSL  226 (374)
T ss_pred             CCCCEEEEECCC-HHHHHHHHHh-cCCCCeEEEEeCCHHHHHHHHhccccchhccccCCCCceEEEECcHHHHHHhcCCC
Confidence            678899999999 5777777776 345689999999999999999731     122211479999999998865443 46


Q ss_pred             cceeehhhhccC----ChhHHHHHHHHHHhhccCCcEEEEeec
Q 042119          203 YDCIFLAALVGM----SKEEKLTILGHIRKYMKDGGILLVRSA  241 (286)
Q Consensus       203 fD~V~~aalvg~----~~~~k~~vl~~l~~~l~pgg~lv~r~~  241 (286)
                      ||+|+++..-..    ..--..++++.+++.|+|||++++...
T Consensus       227 YDVIIvDl~DP~~~~~~~LyT~EFy~~~~~~LkPgGV~V~Qs~  269 (374)
T PRK01581        227 YDVIIIDFPDPATELLSTLYTSELFARIATFLTEDGAFVCQSN  269 (374)
T ss_pred             ccEEEEcCCCccccchhhhhHHHHHHHHHHhcCCCcEEEEecC
Confidence            999998853211    111135799999999999999998753

>PF08704 GCD14: tRNA methyltransferase complex GCD14 subunit; InterPro: IPR014816 GCD14 is a subunit of the tRNA methyltransferase complex and is required for 1-methyladenosine modification and maturation of initiator methionyl-tRNA []

Probab=99.15  E-value=2.1e-10  Score=104.39  Aligned_cols=110  Identities=21%  Similarity=0.331  Sum_probs=85.8

Q ss_pred             HHhcCCCCCCEEEEeccCCChhhHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEccccchhh--cC
Q 042119          123 LSENGVVQPKKVAFVGSGPMPLTSIIMAKHHLTSTHFDNFDIDEAANDVARSIVASDAEFEGRMKFLTRDIMEVKE--QL  200 (286)
Q Consensus       123 l~~~~~~~~~~VL~IG~G~lp~tai~lA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~g~l~~~i~f~~~D~~~~~~--~l  200 (286)
                      +...++.+|++|++-|+|.+.+| ..||+...|.++|+.+|+.++..+.|++.++..| +.+++++.+.|+.+..+  ++
T Consensus        33 ~~~l~i~pG~~VlEaGtGSG~lt-~~l~r~v~p~G~v~t~E~~~~~~~~A~~n~~~~g-l~~~v~~~~~Dv~~~g~~~~~  110 (247)
T PF08704_consen   33 LMRLDIRPGSRVLEAGTGSGSLT-HALARAVGPTGHVYTYEFREDRAEKARKNFERHG-LDDNVTVHHRDVCEEGFDEEL  110 (247)
T ss_dssp             HHHTT--TT-EEEEE--TTSHHH-HHHHHHHTTTSEEEEEESSHHHHHHHHHHHHHTT-CCTTEEEEES-GGCG--STT-
T ss_pred             HHHcCCCCCCEEEEecCCcHHHH-HHHHHHhCCCeEEEccccCHHHHHHHHHHHHHcC-CCCCceeEecceecccccccc
Confidence            34557899999999999986665 5677667789999999999999999999999999 78899999999965333  22


Q ss_pred             -CCcceeehhhhccCChhHHHHHHHHHHhhc-cCCcEEEEee
Q 042119          201 -GEYDCIFLAALVGMSKEEKLTILGHIRKYM-KDGGILLVRS  240 (286)
Q Consensus       201 -~~fD~V~~aalvg~~~~~k~~vl~~l~~~l-~pgg~lv~r~  240 (286)
                       ..||.||++-      ++..+++.++.+.| +|||++++=+
T Consensus       111 ~~~~DavfLDl------p~Pw~~i~~~~~~L~~~gG~i~~fs  146 (247)
T PF08704_consen  111 ESDFDAVFLDL------PDPWEAIPHAKRALKKPGGRICCFS  146 (247)
T ss_dssp             TTSEEEEEEES------SSGGGGHHHHHHHE-EEEEEEEEEE
T ss_pred             cCcccEEEEeC------CCHHHHHHHHHHHHhcCCceEEEEC
Confidence             4699999883      46668999999999 9999999854

; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity, 0030488 tRNA methylation; PDB: 2YVL_C 1YB2_A 2B25_B 1O54_A 2PWY_B 1I9G_A 3LGA_B 3LHD_C 3MB5_A.

>PLN02336 phosphoethanolamine N-methyltransferase

Probab=99.14  E-value=4.4e-10  Score=110.66  Aligned_cols=104  Identities=24%  Similarity=0.296  Sum_probs=81.0

Q ss_pred             CCCCEEEEeccCCChhhHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEccccc--hhhcCCCccee
Q 042119          129 VQPKKVAFVGSGPMPLTSIIMAKHHLTSTHFDNFDIDEAANDVARSIVASDAEFEGRMKFLTRDIME--VKEQLGEYDCI  206 (286)
Q Consensus       129 ~~~~~VL~IG~G~lp~tai~lA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~g~l~~~i~f~~~D~~~--~~~~l~~fD~V  206 (286)
                      .++++|||||||+ |..+..+++   .+.+|+|+|+++++++.+++.   .+ ..++++|+++|+.+  .+.+.+.||+|
T Consensus        36 ~~~~~vLDlGcG~-G~~~~~la~---~~~~v~giD~s~~~l~~a~~~---~~-~~~~i~~~~~d~~~~~~~~~~~~fD~I  107 (475)
T PLN02336         36 YEGKSVLELGAGI-GRFTGELAK---KAGQVIALDFIESVIKKNESI---NG-HYKNVKFMCADVTSPDLNISDGSVDLI  107 (475)
T ss_pred             cCCCEEEEeCCCc-CHHHHHHHh---hCCEEEEEeCCHHHHHHHHHH---hc-cCCceEEEEecccccccCCCCCCEEEE
Confidence            4678999999996 666777887   467999999999999988764   23 23689999999864  23333579999


Q ss_pred             ehhhhc-cCChhHHHHHHHHHHhhccCCcEEEEee
Q 042119          207 FLAALV-GMSKEEKLTILGHIRKYMKDGGILLVRS  240 (286)
Q Consensus       207 ~~aalv-g~~~~~k~~vl~~l~~~l~pgg~lv~r~  240 (286)
                      +..... .++.++..++++++.+.|+|||.+++++
T Consensus       108 ~~~~~l~~l~~~~~~~~l~~~~r~Lk~gG~l~~~d  142 (475)
T PLN02336        108 FSNWLLMYLSDKEVENLAERMVKWLKVGGYIFFRE  142 (475)
T ss_pred             ehhhhHHhCCHHHHHHHHHHHHHhcCCCeEEEEEe
Confidence            976443 3344556789999999999999999986

>TIGR01983 UbiG ubiquinone biosynthesis O-methyltransferase

Probab=99.12  E-value=7e-10  Score=98.01  Aligned_cols=104  Identities=18%  Similarity=0.263  Sum_probs=83.5

Q ss_pred             CCCEEEEeccCCChhhHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEccccchhhcC-CCcceeeh
Q 042119          130 QPKKVAFVGSGPMPLTSIIMAKHHLTSTHFDNFDIDEAANDVARSIVASDAEFEGRMKFLTRDIMEVKEQL-GEYDCIFL  208 (286)
Q Consensus       130 ~~~~VL~IG~G~lp~tai~lA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~g~l~~~i~f~~~D~~~~~~~l-~~fD~V~~  208 (286)
                      .+.+||++|||+ |..+..+++   .+.+++++|+++.+++.+++.+...+.  .+++|.++|+.+.+... +.||+|+.
T Consensus        45 ~~~~vLdlG~G~-G~~~~~l~~---~~~~v~~iD~s~~~~~~a~~~~~~~~~--~~~~~~~~d~~~~~~~~~~~~D~i~~  118 (224)
T TIGR01983        45 FGLRVLDVGCGG-GLLSEPLAR---LGANVTGIDASEENIEVAKLHAKKDPL--LKIEYRCTSVEDLAEKGAKSFDVVTC  118 (224)
T ss_pred             CCCeEEEECCCC-CHHHHHHHh---cCCeEEEEeCCHHHHHHHHHHHHHcCC--CceEEEeCCHHHhhcCCCCCccEEEe
Confidence            578999999997 555667776   467899999999999999999887772  36999999998766543 57999987


Q ss_pred             hhhccCChhHHHHHHHHHHhhccCCcEEEEee
Q 042119          209 AALVGMSKEEKLTILGHIRKYMKDGGILLVRS  240 (286)
Q Consensus       209 aalvg~~~~~k~~vl~~l~~~l~pgg~lv~r~  240 (286)
                      ...... ..+...+++.+.+.|+|||.+++..
T Consensus       119 ~~~l~~-~~~~~~~l~~~~~~L~~gG~l~i~~  149 (224)
T TIGR01983       119 MEVLEH-VPDPQAFIRACAQLLKPGGILFFST  149 (224)
T ss_pred             hhHHHh-CCCHHHHHHHHHHhcCCCcEEEEEe
Confidence            654432 2455689999999999999998865

This model represents an O-methyltransferase believed to act at two points in the ubiquinone biosynthetic pathway in bacteria (UbiG) and fungi (COQ3). A separate methylase (MenG/UbiE) catalyzes the single C-methylation step. The most commonly used names for genes in this family do not indicate whether this gene is an O-methyl, or C-methyl transferase.

>PRK05785 hypothetical protein; Provisional

Probab=99.12  E-value=2.7e-10  Score=102.24  Aligned_cols=91  Identities=12%  Similarity=0.099  Sum_probs=72.8

Q ss_pred             CCCEEEEeccCCChhhHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEccccchhhcCCCcceeehh
Q 042119          130 QPKKVAFVGSGPMPLTSIIMAKHHLTSTHFDNFDIDEAANDVARSIVASDAEFEGRMKFLTRDIMEVKEQLGEYDCIFLA  209 (286)
Q Consensus       130 ~~~~VL~IG~G~lp~tai~lA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~g~l~~~i~f~~~D~~~~~~~l~~fD~V~~a  209 (286)
                      ++.+|||||||+ |..+..+++. . +.+|+|+|+|++|++.|++.    .      .++++|+.+++...+.||+|+..
T Consensus        51 ~~~~VLDlGcGt-G~~~~~l~~~-~-~~~v~gvD~S~~Ml~~a~~~----~------~~~~~d~~~lp~~d~sfD~v~~~  117 (226)
T PRK05785         51 RPKKVLDVAAGK-GELSYHFKKV-F-KYYVVALDYAENMLKMNLVA----D------DKVVGSFEALPFRDKSFDVVMSS  117 (226)
T ss_pred             CCCeEEEEcCCC-CHHHHHHHHh-c-CCEEEEECCCHHHHHHHHhc----c------ceEEechhhCCCCCCCEEEEEec
Confidence            478999999997 5566777773 2 78999999999999999863    1      35789998888777789999876


Q ss_pred             hhccCChhHHHHHHHHHHhhccCCc
Q 042119          210 ALVGMSKEEKLTILGHIRKYMKDGG  234 (286)
Q Consensus       210 alvg~~~~~k~~vl~~l~~~l~pgg  234 (286)
                      ..+. ..+++.+++++++|++||+.
T Consensus       118 ~~l~-~~~d~~~~l~e~~RvLkp~~  141 (226)
T PRK05785        118 FALH-ASDNIEKVIAEFTRVSRKQV  141 (226)
T ss_pred             Chhh-ccCCHHHHHHHHHHHhcCce
Confidence            5442 34677889999999999954

>PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed

Probab=99.11  E-value=6.1e-10  Score=111.03  Aligned_cols=107  Identities=18%  Similarity=0.250  Sum_probs=82.9

Q ss_pred             CCCEEEEeccCCChhhHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEccccchhhcCCCcceeehh
Q 042119          130 QPKKVAFVGSGPMPLTSIIMAKHHLTSTHFDNFDIDEAANDVARSIVASDAEFEGRMKFLTRDIMEVKEQLGEYDCIFLA  209 (286)
Q Consensus       130 ~~~~VL~IG~G~lp~tai~lA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~g~l~~~i~f~~~D~~~~~~~l~~fD~V~~a  209 (286)
                      ++.+|||||||+ |..++.+|+ ..++++|+++|+|++|++.|++++...| +.++++++++|..+.. ..+.||+|+..
T Consensus       138 ~~~~VLDlG~Gs-G~iai~la~-~~p~~~v~avDis~~al~~A~~N~~~~~-l~~~v~~~~~D~~~~~-~~~~fDlIvsN  213 (506)
T PRK01544        138 KFLNILELGTGS-GCIAISLLC-ELPNANVIATDISLDAIEVAKSNAIKYE-VTDRIQIIHSNWFENI-EKQKFDFIVSN  213 (506)
T ss_pred             CCCEEEEccCch-hHHHHHHHH-HCCCCeEEEEECCHHHHHHHHHHHHHcC-CccceeeeecchhhhC-cCCCccEEEEC
Confidence            457999999996 666777776 3689999999999999999999999988 7789999999985522 22469999852


Q ss_pred             -----------------------hhccC--ChhHHHHHHHHHHhhccCCcEEEEee
Q 042119          210 -----------------------ALVGM--SKEEKLTILGHIRKYMKDGGILLVRS  240 (286)
Q Consensus       210 -----------------------alvg~--~~~~k~~vl~~l~~~l~pgg~lv~r~  240 (286)
                                             |+.|.  ..+...++++++.++|+|||.+++-.
T Consensus       214 PPYi~~~~~~~l~~~v~~~EP~~AL~gg~dGl~~~~~il~~a~~~L~~gG~l~lEi  269 (506)
T PRK01544        214 PPYISHSEKSEMAIETINYEPSIALFAEEDGLQAYFIIAENAKQFLKPNGKIILEI  269 (506)
T ss_pred             CCCCCchhhhhcCchhhccCcHHHhcCCccHHHHHHHHHHHHHHhccCCCEEEEEE
Confidence                                   11111  11234568889999999999999854

>PLN02585 magnesium protoporphyrin IX methyltransferase

Probab=99.10  E-value=1.6e-09  Score=101.92  Aligned_cols=120  Identities=17%  Similarity=0.204  Sum_probs=81.7

Q ss_pred             chhhhhHHHHHHHHhcCCCCCCEEEEeccCCChhhHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCC---CCCCeE
Q 042119          111 NYVKLSKLEYTILSENGVVQPKKVAFVGSGPMPLTSIIMAKHHLTSTHFDNFDIDEAANDVARSIVASDAE---FEGRMK  187 (286)
Q Consensus       111 ny~~l~~~E~~~l~~~~~~~~~~VL~IG~G~lp~tai~lA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~g~---l~~~i~  187 (286)
                      ++...++.-...+...+..++.+|||||||+ |..++.+++   .|.+|+|+|+|++|++.|++.....+.   ...+++
T Consensus       125 ~~~~~v~~~l~~l~~~~~~~~~~VLDlGcGt-G~~a~~la~---~g~~V~gvD~S~~ml~~A~~~~~~~~~~~~~~~~~~  200 (315)
T PLN02585        125 GHAQTVEKVLLWLAEDGSLAGVTVCDAGCGT-GSLAIPLAL---EGAIVSASDISAAMVAEAERRAKEALAALPPEVLPK  200 (315)
T ss_pred             ChHHHHHHHHHHHHhcCCCCCCEEEEecCCC-CHHHHHHHH---CCCEEEEEECCHHHHHHHHHHHHhcccccccccceE
Confidence            4444444333333332223578999999996 667788888   589999999999999999999876531   124789


Q ss_pred             EEEccccchhhcCCCcceeehhhh-ccCChhHHHHHHHHHHhhccCCcEEEE
Q 042119          188 FLTRDIMEVKEQLGEYDCIFLAAL-VGMSKEEKLTILGHIRKYMKDGGILLV  238 (286)
Q Consensus       188 f~~~D~~~~~~~l~~fD~V~~aal-vg~~~~~k~~vl~~l~~~l~pgg~lv~  238 (286)
                      |.++|+.++   .+.||+|+.... .+++.+....+++.+.+ +.+|++++.
T Consensus       201 f~~~Dl~~l---~~~fD~Vv~~~vL~H~p~~~~~~ll~~l~~-l~~g~liIs  248 (315)
T PLN02585        201 FEANDLESL---SGKYDTVTCLDVLIHYPQDKADGMIAHLAS-LAEKRLIIS  248 (315)
T ss_pred             EEEcchhhc---CCCcCEEEEcCEEEecCHHHHHHHHHHHHh-hcCCEEEEE
Confidence            999997543   257999885433 34444444567777775 466666554

>PTZ00146 fibrillarin; Provisional

Probab=99.09  E-value=1.5e-09  Score=100.78  Aligned_cols=189  Identities=10%  Similarity=0.049  Sum_probs=112.3

Q ss_pred             hHHHHHHhcCCCCccc-ccccCcCccc-hhhhhHHHHHHHHhcCCCCCCEEEEeccCCChhhHHHHHhhcCCCcEEEEEe
Q 042119           86 ELEFATFLTKIPQPLN-NLSLFPYYGN-YVKLSKLEYTILSENGVVQPKKVAFVGSGPMPLTSIIMAKHHLTSTHFDNFD  163 (286)
Q Consensus        86 E~~~A~~l~~~~~p~~-~L~~fpy~~n-y~~l~~~E~~~l~~~~~~~~~~VL~IG~G~lp~tai~lA~~~~~g~~V~~iD  163 (286)
                      |..|.+++...+++-. +=..|.-|+- ..+|+..-+.-+....++++++|||+|||| |.++..+|+..-+..+|+++|
T Consensus        86 ~~vygek~~~~~~~~~~~~~eyR~w~p~rSKlaa~i~~g~~~l~IkpG~~VLDLGaG~-G~~t~~lAdiVG~~G~VyAVD  164 (293)
T PTZ00146         86 ESVYGEKRISVEDAEGGEKIEYRVWNPFRSKLAAAIIGGVANIPIKPGSKVLYLGAAS-GTTVSHVSDLVGPEGVVYAVE  164 (293)
T ss_pred             cccccceEEeeccCCCCCcceeeeeCCcccHHHHHHHCCcceeccCCCCEEEEeCCcC-CHHHHHHHHHhCCCCEEEEEE
Confidence            5666666655432210 0012333322 234444444545455678999999999998 667778887433457999999


Q ss_pred             CChHHHHHHHHHHHhcCCCCCCeEEEEccccchh---hcCCCcceeehhhhccCChhHHHHHHHHHHhhccCCcEEEEee
Q 042119          164 IDEAANDVARSIVASDAEFEGRMKFLTRDIMEVK---EQLGEYDCIFLAALVGMSKEEKLTILGHIRKYMKDGGILLVRS  240 (286)
Q Consensus       164 id~~ai~~Ar~~~~~~g~l~~~i~f~~~D~~~~~---~~l~~fD~V~~aalvg~~~~~k~~vl~~l~~~l~pgg~lv~r~  240 (286)
                      +++.+.+...+.+...    .+|.++.+|+....   .....||+||.+...   ..+...++.++.+.|||||.+++.-
T Consensus       165 ~s~r~~~dLl~~ak~r----~NI~~I~~Da~~p~~y~~~~~~vDvV~~Dva~---pdq~~il~~na~r~LKpGG~~vI~i  237 (293)
T PTZ00146        165 FSHRSGRDLTNMAKKR----PNIVPIIEDARYPQKYRMLVPMVDVIFADVAQ---PDQARIVALNAQYFLKNGGHFIISI  237 (293)
T ss_pred             CcHHHHHHHHHHhhhc----CCCEEEECCccChhhhhcccCCCCEEEEeCCC---cchHHHHHHHHHHhccCCCEEEEEE
Confidence            9988765555544322    46899999986421   123579999987532   2344456678999999999999842


Q ss_pred             cCcceeeecccCC-----cccc--cCcEEEEEecCcc-cceeeeEEEeec
Q 042119          241 AKGARAFLYPVVV-----EHDL--LDFEVLSAVHPND-DVINSVVLVRNS  282 (286)
Q Consensus       241 ~~g~r~~lyp~v~-----~~~l--~gf~~~~~~~P~~-~vinsvi~~r~~  282 (286)
                      -+.-...-.|+-+     .+.+  .||+.+.+++..+ +--.++|+++.+
T Consensus       238 ka~~id~g~~pe~~f~~ev~~L~~~GF~~~e~v~L~Py~~~h~~v~~~~~  287 (293)
T PTZ00146        238 KANCIDSTAKPEVVFASEVQKLKKEGLKPKEQLTLEPFERDHAVVIGVYR  287 (293)
T ss_pred             eccccccCCCHHHHHHHHHHHHHHcCCceEEEEecCCccCCcEEEEEEEc
Confidence            1110011111100     0112  4899887776443 334456666653

>COG4123 Predicted O-methyltransferase [General function prediction only]

Probab=99.09  E-value=8.5e-10  Score=100.17  Aligned_cols=110  Identities=21%  Similarity=0.289  Sum_probs=87.0

Q ss_pred             CCCCCEEEEeccCCChhhHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEccccchhhcCC--Ccce
Q 042119          128 VVQPKKVAFVGSGPMPLTSIIMAKHHLTSTHFDNFDIDEAANDVARSIVASDAEFEGRMKFLTRDIMEVKEQLG--EYDC  205 (286)
Q Consensus       128 ~~~~~~VL~IG~G~lp~tai~lA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~g~l~~~i~f~~~D~~~~~~~l~--~fD~  205 (286)
                      +....+|||+|||. |.-++++|++ .+.++|++||+++++.+.|++.++..+ +++||+++++|+.+......  +||+
T Consensus        42 ~~~~~~IlDlGaG~-G~l~L~la~r-~~~a~I~~VEiq~~~a~~A~~nv~ln~-l~~ri~v~~~Di~~~~~~~~~~~fD~  118 (248)
T COG4123          42 VPKKGRILDLGAGN-GALGLLLAQR-TEKAKIVGVEIQEEAAEMAQRNVALNP-LEERIQVIEADIKEFLKALVFASFDL  118 (248)
T ss_pred             cccCCeEEEecCCc-CHHHHHHhcc-CCCCcEEEEEeCHHHHHHHHHHHHhCc-chhceeEehhhHHHhhhcccccccCE
Confidence            35589999999995 7788889984 566999999999999999999999988 89999999999998776553  5999


Q ss_pred             eehhh-----hcc------------CChhHHHHHHHHHHhhccCCcEEEEee
Q 042119          206 IFLAA-----LVG------------MSKEEKLTILGHIRKYMKDGGILLVRS  240 (286)
Q Consensus       206 V~~aa-----lvg------------~~~~~k~~vl~~l~~~l~pgg~lv~r~  240 (286)
                      |+..-     ...            +..-+-+++++...+.|||||.+.+-.
T Consensus       119 Ii~NPPyf~~~~~~~~~~~~~~Ar~e~~~~le~~i~~a~~~lk~~G~l~~V~  170 (248)
T COG4123         119 IICNPPYFKQGSRLNENPLRAIARHEITLDLEDLIRAAAKLLKPGGRLAFVH  170 (248)
T ss_pred             EEeCCCCCCCccccCcChhhhhhhhhhcCCHHHHHHHHHHHccCCCEEEEEe
Confidence            86431     111            000124568888999999999987753

>PRK09489 rsmC 16S ribosomal RNA m2G1207 methyltransferase; Provisional

Probab=99.09  E-value=1.4e-09  Score=103.48  Aligned_cols=105  Identities=21%  Similarity=0.329  Sum_probs=81.1

Q ss_pred             CCCCEEEEeccCCChhhHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEccccchhhcCCCcceeeh
Q 042119          129 VQPKKVAFVGSGPMPLTSIIMAKHHLTSTHFDNFDIDEAANDVARSIVASDAEFEGRMKFLTRDIMEVKEQLGEYDCIFL  208 (286)
Q Consensus       129 ~~~~~VL~IG~G~lp~tai~lA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~g~l~~~i~f~~~D~~~~~~~l~~fD~V~~  208 (286)
                      ..+.+|||+|||+ |.-++.+++ ..++.+|+++|+|+.|++.|++.++..+ +  ..+++.+|+.+.  ..+.||+|+.
T Consensus       195 ~~~g~VLDlGCG~-G~ls~~la~-~~p~~~v~~vDis~~Al~~A~~nl~~n~-l--~~~~~~~D~~~~--~~~~fDlIvs  267 (342)
T PRK09489        195 HTKGKVLDVGCGA-GVLSAVLAR-HSPKIRLTLSDVSAAALESSRATLAANG-L--EGEVFASNVFSD--IKGRFDMIIS  267 (342)
T ss_pred             cCCCeEEEeccCc-CHHHHHHHH-hCCCCEEEEEECCHHHHHHHHHHHHHcC-C--CCEEEEcccccc--cCCCccEEEE
Confidence            4456899999997 556667776 3688899999999999999999999888 4  357888888542  2257999986


Q ss_pred             hhhc--cC--ChhHHHHHHHHHHhhccCCcEEEEee
Q 042119          209 AALV--GM--SKEEKLTILGHIRKYMKDGGILLVRS  240 (286)
Q Consensus       209 aalv--g~--~~~~k~~vl~~l~~~l~pgg~lv~r~  240 (286)
                      .--.  +.  +.....+++.++.++|+|||.+.+..
T Consensus       268 NPPFH~g~~~~~~~~~~~i~~a~~~LkpgG~L~iVa  303 (342)
T PRK09489        268 NPPFHDGIQTSLDAAQTLIRGAVRHLNSGGELRIVA  303 (342)
T ss_pred             CCCccCCccccHHHHHHHHHHHHHhcCcCCEEEEEE
Confidence            4321  11  23556789999999999999987764

>KOG4300 consensus Predicted methyltransferase [General function prediction only]

Probab=99.09  E-value=3.5e-10  Score=99.58  Aligned_cols=106  Identities=20%  Similarity=0.270  Sum_probs=82.6

Q ss_pred             CCCCEEEEeccCCChhhHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeE-EEEccccchhh-cCCCccee
Q 042119          129 VQPKKVAFVGSGPMPLTSIIMAKHHLTSTHFDNFDIDEAANDVARSIVASDAEFEGRMK-FLTRDIMEVKE-QLGEYDCI  206 (286)
Q Consensus       129 ~~~~~VL~IG~G~lp~tai~lA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~g~l~~~i~-f~~~D~~~~~~-~l~~fD~V  206 (286)
                      ...-.||+|||||++-  .-+-. -.|+.+||++|.+|.|-+.|.+-++....  .++. |++|++.+++. +.++||.|
T Consensus        75 ~~K~~vLEvgcGtG~N--fkfy~-~~p~~svt~lDpn~~mee~~~ks~~E~k~--~~~~~fvva~ge~l~~l~d~s~DtV  149 (252)
T KOG4300|consen   75 SGKGDVLEVGCGTGAN--FKFYP-WKPINSVTCLDPNEKMEEIADKSAAEKKP--LQVERFVVADGENLPQLADGSYDTV  149 (252)
T ss_pred             cCccceEEecccCCCC--ccccc-CCCCceEEEeCCcHHHHHHHHHHHhhccC--cceEEEEeechhcCcccccCCeeeE
Confidence            3445789999998642  11111 13799999999999999999998887652  5676 99999998873 34589998


Q ss_pred             ehhhhccCChhHHHHHHHHHHhhccCCcEEEEee
Q 042119          207 FLAALVGMSKEEKLTILGHIRKYMKDGGILLVRS  240 (286)
Q Consensus       207 ~~aalvg~~~~~k~~vl~~l~~~l~pgg~lv~r~  240 (286)
                      +. .++-++.++..+.|.++.|.|+|||++++-.
T Consensus       150 V~-TlvLCSve~~~k~L~e~~rlLRpgG~iifiE  182 (252)
T KOG4300|consen  150 VC-TLVLCSVEDPVKQLNEVRRLLRPGGRIIFIE  182 (252)
T ss_pred             EE-EEEEeccCCHHHHHHHHHHhcCCCcEEEEEe
Confidence            74 4555566888999999999999999999875

>PRK06202 hypothetical protein; Provisional

Probab=99.07  E-value=7.5e-10  Score=99.05  Aligned_cols=104  Identities=15%  Similarity=0.155  Sum_probs=74.1

Q ss_pred             CCCCEEEEeccCCChhhHHHHHhh---cCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEccccchhhcCCCcce
Q 042119          129 VQPKKVAFVGSGPMPLTSIIMAKH---HLTSTHFDNFDIDEAANDVARSIVASDAEFEGRMKFLTRDIMEVKEQLGEYDC  205 (286)
Q Consensus       129 ~~~~~VL~IG~G~lp~tai~lA~~---~~~g~~V~~iDid~~ai~~Ar~~~~~~g~l~~~i~f~~~D~~~~~~~l~~fD~  205 (286)
                      .++.+|||||||++. .+..|++.   ..++.+|+|+|+++++++.|++....     .++++.++|+.+++...+.||+
T Consensus        59 ~~~~~iLDlGcG~G~-~~~~L~~~~~~~g~~~~v~gvD~s~~~l~~a~~~~~~-----~~~~~~~~~~~~l~~~~~~fD~  132 (232)
T PRK06202         59 DRPLTLLDIGCGGGD-LAIDLARWARRDGLRLEVTAIDPDPRAVAFARANPRR-----PGVTFRQAVSDELVAEGERFDV  132 (232)
T ss_pred             CCCcEEEEeccCCCH-HHHHHHHHHHhCCCCcEEEEEcCCHHHHHHHHhcccc-----CCCeEEEEecccccccCCCccE
Confidence            567899999999754 45566642   23567999999999999999987543     3467777776655554468999


Q ss_pred             eehhhhc-cCChhHHHHHHHHHHhhccCCcEEEEee
Q 042119          206 IFLAALV-GMSKEEKLTILGHIRKYMKDGGILLVRS  240 (286)
Q Consensus       206 V~~aalv-g~~~~~k~~vl~~l~~~l~pgg~lv~r~  240 (286)
                      |+..... ..+.++..+++.++.+.++ | .+++.+
T Consensus       133 V~~~~~lhh~~d~~~~~~l~~~~r~~~-~-~~~i~d  166 (232)
T PRK06202        133 VTSNHFLHHLDDAEVVRLLADSAALAR-R-LVLHND  166 (232)
T ss_pred             EEECCeeecCChHHHHHHHHHHHHhcC-e-eEEEec
Confidence            9876433 3444446689999999987 4 444443

>TIGR03704 PrmC_rel_meth putative protein-(glutamine-N5) methyltransferase, unknown substrate-specific

Probab=99.07  E-value=1.2e-09  Score=99.68  Aligned_cols=135  Identities=21%  Similarity=0.192  Sum_probs=91.2

Q ss_pred             CCCEEEEeccCCChhhHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEccccchhh-cC-CCcceee
Q 042119          130 QPKKVAFVGSGPMPLTSIIMAKHHLTSTHFDNFDIDEAANDVARSIVASDAEFEGRMKFLTRDIMEVKE-QL-GEYDCIF  207 (286)
Q Consensus       130 ~~~~VL~IG~G~lp~tai~lA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~g~l~~~i~f~~~D~~~~~~-~l-~~fD~V~  207 (286)
                      .+.+|+|+|||+ |.-++.+++ ..++.+|+++|+|++|++.|+++++..|     ++|+++|+.+... .+ +.||+|+
T Consensus        86 ~~~~vLDlg~Gs-G~i~l~la~-~~~~~~v~~vDis~~al~~A~~N~~~~~-----~~~~~~D~~~~l~~~~~~~fDlVv  158 (251)
T TIGR03704        86 GTLVVVDLCCGS-GAVGAALAA-ALDGIELHAADIDPAAVRCARRNLADAG-----GTVHEGDLYDALPTALRGRVDILA  158 (251)
T ss_pred             CCCEEEEecCch-HHHHHHHHH-hCCCCEEEEEECCHHHHHHHHHHHHHcC-----CEEEEeechhhcchhcCCCEeEEE
Confidence            356999999997 555666776 3678899999999999999999988766     3789999865332 12 4699998


Q ss_pred             hhhh-c------cCChh------------------HHHHHHHHHHhhccCCcEEEEeecCcceeeecccC-CcccccCcE
Q 042119          208 LAAL-V------GMSKE------------------EKLTILGHIRKYMKDGGILLVRSAKGARAFLYPVV-VEHDLLDFE  261 (286)
Q Consensus       208 ~aal-v------g~~~~------------------~k~~vl~~l~~~l~pgg~lv~r~~~g~r~~lyp~v-~~~~l~gf~  261 (286)
                      ..-- +      .++.+                  -..++++...++|+|||.+++-....  +  .+.+ ..-.-.||+
T Consensus       159 ~NPPy~~~~~~~~~~~e~~~~ep~~al~gg~dgl~~~~~i~~~a~~~L~~gG~l~l~~~~~--~--~~~v~~~l~~~g~~  234 (251)
T TIGR03704       159 ANAPYVPTDAIALMPPEARDHEPRVALDGGADGLDVLRRVAAGAPDWLAPGGHLLVETSER--Q--APLAVEAFARAGLI  234 (251)
T ss_pred             ECCCCCCchhhhcCCHHHHhCCCHHHhcCCCcHHHHHHHHHHHHHHhcCCCCEEEEEECcc--h--HHHHHHHHHHCCCC
Confidence            5421 1      01111                  13478888889999999999875322  1  1110 100114788


Q ss_pred             EEEEecCcccceeeeE
Q 042119          262 VLSAVHPNDDVINSVV  277 (286)
Q Consensus       262 ~~~~~~P~~~vinsvi  277 (286)
                      .....||.-  .-+|+
T Consensus       235 ~~~~~~~~~--~~~~~  248 (251)
T TIGR03704       235 ARVASSEEL--YATVV  248 (251)
T ss_pred             ceeeEcccc--cceee
Confidence            888888875  44444

This protein family is closely related to two different families of protein-(glutamine-N5) methyltransferase. The first is PrmB, which modifies ribosomal protein L3 in some bacteria. The second is PrmC (HemK), which modifies peptide chain release factors 1 and 2 in most bacteria and also in eukaryotes. The glutamine side chain-binding motif NPPY shared by PrmB and PrmC is N[VAT]PY in this family. The protein substrate is unknown.

>KOG1271 consensus Methyltransferases [General function prediction only]

Probab=99.06  E-value=1.2e-09  Score=94.49  Aligned_cols=108  Identities=24%  Similarity=0.398  Sum_probs=83.7

Q ss_pred             CCCEEEEeccCCChhhHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEccccchhhcCCCcceeeh-
Q 042119          130 QPKKVAFVGSGPMPLTSIIMAKHHLTSTHFDNFDIDEAANDVARSIVASDAEFEGRMKFLTRDIMEVKEQLGEYDCIFL-  208 (286)
Q Consensus       130 ~~~~VL~IG~G~lp~tai~lA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~g~l~~~i~f~~~D~~~~~~~l~~fD~V~~-  208 (286)
                      ...|||++|||. |.-...|++..+ ....+|+|.|+.|+++|+.++++.| +++.|+|.+.|+.+-.+..++||+|+- 
T Consensus        67 ~A~~VlDLGtGN-G~~L~~L~~egf-~~~L~GvDYs~~AV~LA~niAe~~~-~~n~I~f~q~DI~~~~~~~~qfdlvlDK  143 (227)
T KOG1271|consen   67 QADRVLDLGTGN-GHLLFQLAKEGF-QSKLTGVDYSEKAVELAQNIAERDG-FSNEIRFQQLDITDPDFLSGQFDLVLDK  143 (227)
T ss_pred             cccceeeccCCc-hHHHHHHHHhcC-CCCccccccCHHHHHHHHHHHHhcC-CCcceeEEEeeccCCcccccceeEEeec
Confidence            334999999996 777788887433 3458999999999999999999999 788899999999875444568999963 


Q ss_pred             ---hh--hccCChhHH-HHHHHHHHhhccCCcEEEEee
Q 042119          209 ---AA--LVGMSKEEK-LTILGHIRKYMKDGGILLVRS  240 (286)
Q Consensus       209 ---aa--lvg~~~~~k-~~vl~~l~~~l~pgg~lv~r~  240 (286)
                         +|  +-++....| .-.+..+.+.|+|||++++.+
T Consensus       144 GT~DAisLs~d~~~~r~~~Y~d~v~~ll~~~gifvItS  181 (227)
T KOG1271|consen  144 GTLDAISLSPDGPVGRLVVYLDSVEKLLSPGGIFVITS  181 (227)
T ss_pred             CceeeeecCCCCcccceeeehhhHhhccCCCcEEEEEe
Confidence               22  223333333 456788899999999999986

>PRK15128 23S rRNA m(5)C1962 methyltransferase; Provisional

Probab=99.06  E-value=1.5e-09  Score=105.05  Aligned_cols=108  Identities=20%  Similarity=0.218  Sum_probs=81.4

Q ss_pred             CCCCEEEEeccCCChhhHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCC-CCeEEEEccccchhhcC----CCc
Q 042119          129 VQPKKVAFVGSGPMPLTSIIMAKHHLTSTHFDNFDIDEAANDVARSIVASDAEFE-GRMKFLTRDIMEVKEQL----GEY  203 (286)
Q Consensus       129 ~~~~~VL~IG~G~lp~tai~lA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~g~l~-~~i~f~~~D~~~~~~~l----~~f  203 (286)
                      .++++||++|||+++++ +..+.  ....+|+++|+|+.+++.|+++++..| +. ++++|+++|+.+....+    ..|
T Consensus       219 ~~g~rVLDlfsgtG~~~-l~aa~--~ga~~V~~VD~s~~al~~a~~N~~~Ng-l~~~~v~~i~~D~~~~l~~~~~~~~~f  294 (396)
T PRK15128        219 VENKRVLNCFSYTGGFA-VSALM--GGCSQVVSVDTSQEALDIARQNVELNK-LDLSKAEFVRDDVFKLLRTYRDRGEKF  294 (396)
T ss_pred             cCCCeEEEeccCCCHHH-HHHHh--CCCCEEEEEECCHHHHHHHHHHHHHcC-CCCCcEEEEEccHHHHHHHHHhcCCCC
Confidence            46799999999987764 44443  234499999999999999999999998 65 58999999998865432    369


Q ss_pred             ceeehhhhc-cCCh-------hHHHHHHHHHHhhccCCcEEEEee
Q 042119          204 DCIFLAALV-GMSK-------EEKLTILGHIRKYMKDGGILLVRS  240 (286)
Q Consensus       204 D~V~~aalv-g~~~-------~~k~~vl~~l~~~l~pgg~lv~r~  240 (286)
                      |+|+++--- .-..       ....+++....+.|+|||.+++-+
T Consensus       295 DlVilDPP~f~~~k~~l~~~~~~y~~l~~~a~~lLk~gG~lv~~s  339 (396)
T PRK15128        295 DVIVMDPPKFVENKSQLMGACRGYKDINMLAIQLLNPGGILLTFS  339 (396)
T ss_pred             CEEEECCCCCCCChHHHHHHHHHHHHHHHHHHHHcCCCeEEEEEe
Confidence            999987321 0011       234556667889999999999865

>PRK09328 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional

Probab=99.05  E-value=1.8e-09  Score=98.43  Aligned_cols=108  Identities=25%  Similarity=0.362  Sum_probs=81.4

Q ss_pred             CCCCCEEEEeccCCChhhHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEccccchhhcCCCcceee
Q 042119          128 VVQPKKVAFVGSGPMPLTSIIMAKHHLTSTHFDNFDIDEAANDVARSIVASDAEFEGRMKFLTRDIMEVKEQLGEYDCIF  207 (286)
Q Consensus       128 ~~~~~~VL~IG~G~lp~tai~lA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~g~l~~~i~f~~~D~~~~~~~l~~fD~V~  207 (286)
                      ..++.+|||+|||+ |..++.+++ ..+..+|+++|+|+.+++.|++.+. .+ ...+++|+++|+.+... .+.||+|+
T Consensus       106 ~~~~~~vLDiG~Gs-G~~~~~la~-~~~~~~v~~iDis~~~l~~a~~n~~-~~-~~~~i~~~~~d~~~~~~-~~~fD~Iv  180 (275)
T PRK09328        106 LKEPLRVLDLGTGS-GAIALALAK-ERPDAEVTAVDISPEALAVARRNAK-HG-LGARVEFLQGDWFEPLP-GGRFDLIV  180 (275)
T ss_pred             ccCCCEEEEEcCcH-HHHHHHHHH-HCCCCEEEEEECCHHHHHHHHHHHH-hC-CCCcEEEEEccccCcCC-CCceeEEE
Confidence            35678999999996 666778887 4678999999999999999999988 33 34789999999854221 24799997


Q ss_pred             hhhh-c------cCC------------------hhHHHHHHHHHHhhccCCcEEEEee
Q 042119          208 LAAL-V------GMS------------------KEEKLTILGHIRKYMKDGGILLVRS  240 (286)
Q Consensus       208 ~aal-v------g~~------------------~~~k~~vl~~l~~~l~pgg~lv~r~  240 (286)
                      ..-- +      .+.                  .+....+++++.+.|+|||.+++..
T Consensus       181 ~npPy~~~~~~~~~~~~v~~~ep~~al~~g~~g~~~~~~~~~~~~~~Lk~gG~l~~e~  238 (275)
T PRK09328        181 SNPPYIPEADIHLLQPEVRDHEPHLALFGGEDGLDFYRRIIEQAPRYLKPGGWLLLEI  238 (275)
T ss_pred             ECCCcCCcchhhhCCchhhhcCCchhhcCCCCHHHHHHHHHHHHHHhcccCCEEEEEE
Confidence            5210 0      000                  1233678889999999999999854

>TIGR00417 speE spermidine synthase

Probab=99.05  E-value=2e-09  Score=99.00  Aligned_cols=111  Identities=20%  Similarity=0.300  Sum_probs=82.2

Q ss_pred             CCCCEEEEeccCCChhhHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCC-C-CCCeEEEEccccchhhcC-CCcce
Q 042119          129 VQPKKVAFVGSGPMPLTSIIMAKHHLTSTHFDNFDIDEAANDVARSIVASDAE-F-EGRMKFLTRDIMEVKEQL-GEYDC  205 (286)
Q Consensus       129 ~~~~~VL~IG~G~lp~tai~lA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~g~-l-~~~i~f~~~D~~~~~~~l-~~fD~  205 (286)
                      ..|++||+||||.+ .++..+++ +.+..+|+++|+|+++++.|++.+...+. + ..+++++.+|+.+..... +.||+
T Consensus        71 ~~p~~VL~iG~G~G-~~~~~ll~-~~~~~~v~~veid~~vi~~a~~~~~~~~~~~~~~~v~i~~~D~~~~l~~~~~~yDv  148 (270)
T TIGR00417        71 PNPKHVLVIGGGDG-GVLREVLK-HKSVEKATLVDIDEKVIELSKKFLPSLAGSYDDPRVDLQIDDGFKFLADTENTFDV  148 (270)
T ss_pred             CCCCEEEEEcCCch-HHHHHHHh-CCCcceEEEEeCCHHHHHHHHHHhHhhcccccCCceEEEECchHHHHHhCCCCccE
Confidence            56779999999964 45555655 34467999999999999999998765420 1 358999999987654432 47999


Q ss_pred             eehhhhccC-ChhH--HHHHHHHHHhhccCCcEEEEeec
Q 042119          206 IFLAALVGM-SKEE--KLTILGHIRKYMKDGGILLVRSA  241 (286)
Q Consensus       206 V~~aalvg~-~~~~--k~~vl~~l~~~l~pgg~lv~r~~  241 (286)
                      |+.+..-.. +...  ..++++.+.+.|+|||++++...
T Consensus       149 Ii~D~~~~~~~~~~l~~~ef~~~~~~~L~pgG~lv~~~~  187 (270)
T TIGR00417       149 IIVDSTDPVGPAETLFTKEFYELLKKALNEDGIFVAQSE  187 (270)
T ss_pred             EEEeCCCCCCcccchhHHHHHHHHHHHhCCCcEEEEcCC
Confidence            998765211 1112  35789999999999999999753

the SpeE subunit of spermidine synthase catalysesthe reaction (putrescine + S-adenosylmethioninamine = spermidine + 5'-methylthioadenosine) and is involved in polyamine biosynthesis and in the biosynthesis of spermidine from arganine. The region between residues 77 and 120 of the seed alignment is thought to be involved in binding to decarboxylated SAM.

>COG2890 HemK Methylase of polypeptide chain release factors [Translation, ribosomal structure and biogenesis]

Probab=99.03  E-value=1.9e-08  Score=93.29  Aligned_cols=104  Identities=27%  Similarity=0.375  Sum_probs=81.3

Q ss_pred             EEEEeccCCChhhHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEccccchhhcCCCcceeehh---
Q 042119          133 KVAFVGSGPMPLTSIIMAKHHLTSTHFDNFDIDEAANDVARSIVASDAEFEGRMKFLTRDIMEVKEQLGEYDCIFLA---  209 (286)
Q Consensus       133 ~VL~IG~G~lp~tai~lA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~g~l~~~i~f~~~D~~~~~~~l~~fD~V~~a---  209 (286)
                      +|+|||||+ |.-|+.+|+ ..+.++|+++|+|++|++.|++++...| + .++.++.+|..+-..  +.||+|+..   
T Consensus       113 ~ilDlGTGS-G~iai~la~-~~~~~~V~a~Dis~~Al~~A~~Na~~~~-l-~~~~~~~~dlf~~~~--~~fDlIVsNPPY  186 (280)
T COG2890         113 RILDLGTGS-GAIAIALAK-EGPDAEVIAVDISPDALALARENAERNG-L-VRVLVVQSDLFEPLR--GKFDLIVSNPPY  186 (280)
T ss_pred             cEEEecCCh-HHHHHHHHh-hCcCCeEEEEECCHHHHHHHHHHHHHcC-C-ccEEEEeeecccccC--CceeEEEeCCCC
Confidence            899999996 777888888 5788999999999999999999999999 5 778888888744222  368887432   


Q ss_pred             -------------------hhccCC--hhHHHHHHHHHHhhccCCcEEEEeecC
Q 042119          210 -------------------ALVGMS--KEEKLTILGHIRKYMKDGGILLVRSAK  242 (286)
Q Consensus       210 -------------------alvg~~--~~~k~~vl~~l~~~l~pgg~lv~r~~~  242 (286)
                                         ++++..  .+-..+++.++.+.|+|||.+++..+.
T Consensus       187 ip~~~~~~~~~~~~~EP~~Al~~g~dGl~~~~~i~~~a~~~l~~~g~l~le~g~  240 (280)
T COG2890         187 IPAEDPELLPEVVRYEPLLALVGGGDGLEVYRRILGEAPDILKPGGVLILEIGL  240 (280)
T ss_pred             CCCcccccChhhhccCHHHHHccCccHHHHHHHHHHhhHHHcCCCcEEEEEECC
Confidence                               122111  234678899999999999999998763

>TIGR00438 rrmJ cell division protein FtsJ

Probab=99.02  E-value=1.5e-09  Score=94.21  Aligned_cols=99  Identities=13%  Similarity=0.170  Sum_probs=71.0

Q ss_pred             CCCCCEEEEeccCCChhhHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEccccchh--------hc
Q 042119          128 VVQPKKVAFVGSGPMPLTSIIMAKHHLTSTHFDNFDIDEAANDVARSIVASDAEFEGRMKFLTRDIMEVK--------EQ  199 (286)
Q Consensus       128 ~~~~~~VL~IG~G~lp~tai~lA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~g~l~~~i~f~~~D~~~~~--------~~  199 (286)
                      +.++.+||++|||+++++.....+ ..+.++|+++|+++.+           + . .+++++++|+.+..        ..
T Consensus        30 i~~g~~VLDiG~GtG~~~~~l~~~-~~~~~~v~~vDis~~~-----------~-~-~~i~~~~~d~~~~~~~~~l~~~~~   95 (188)
T TIGR00438        30 IKPGDTVLDLGAAPGGWSQVAVEQ-VGGKGRVIAVDLQPMK-----------P-I-ENVDFIRGDFTDEEVLNKIRERVG   95 (188)
T ss_pred             cCCCCEEEEecCCCCHHHHHHHHH-hCCCceEEEEeccccc-----------c-C-CCceEEEeeCCChhHHHHHHHHhC
Confidence            478899999999998877665544 3456799999999864           2 1 35889999986532        12


Q ss_pred             CCCcceeehhhh---ccC-C------hhHHHHHHHHHHhhccCCcEEEEee
Q 042119          200 LGEYDCIFLAAL---VGM-S------KEEKLTILGHIRKYMKDGGILLVRS  240 (286)
Q Consensus       200 l~~fD~V~~aal---vg~-~------~~~k~~vl~~l~~~l~pgg~lv~r~  240 (286)
                      .+.||+|+....   .|. .      .+....++..+.+.|+|||++++-.
T Consensus        96 ~~~~D~V~~~~~~~~~g~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lvi~~  146 (188)
T TIGR00438        96 DDKVDVVMSDAAPNISGYWDIDHLRSIDLVELALDIAKEVLKPKGNFVVKV  146 (188)
T ss_pred             CCCccEEEcCCCCCCCCCccccHHHHHHHHHHHHHHHHHHccCCCEEEEEE
Confidence            346999996431   111 1      1223679999999999999999853

>PRK14966 unknown domain/N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase fusion protein; Provisional

Probab=99.01  E-value=3.7e-09  Score=102.56  Aligned_cols=107  Identities=20%  Similarity=0.251  Sum_probs=79.8

Q ss_pred             CCCCEEEEeccCCChhhHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEccccchhhc-CCCcceee
Q 042119          129 VQPKKVAFVGSGPMPLTSIIMAKHHLTSTHFDNFDIDEAANDVARSIVASDAEFEGRMKFLTRDIMEVKEQ-LGEYDCIF  207 (286)
Q Consensus       129 ~~~~~VL~IG~G~lp~tai~lA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~g~l~~~i~f~~~D~~~~~~~-l~~fD~V~  207 (286)
                      .++.+|||+|||+ |.-++.+++ ..++++|+++|+|++|++.|+++++..|   .+++|+++|..+.... .+.||+|+
T Consensus       250 ~~~~rVLDLGcGS-G~IaiaLA~-~~p~a~VtAVDiS~~ALe~AreNa~~~g---~rV~fi~gDl~e~~l~~~~~FDLIV  324 (423)
T PRK14966        250 PENGRVWDLGTGS-GAVAVTVAL-ERPDAFVRASDISPPALETARKNAADLG---ARVEFAHGSWFDTDMPSEGKWDIIV  324 (423)
T ss_pred             CCCCEEEEEeChh-hHHHHHHHH-hCCCCEEEEEECCHHHHHHHHHHHHHcC---CcEEEEEcchhccccccCCCccEEE
Confidence            4567999999997 556677776 3688999999999999999999999877   3899999998653221 24699998


Q ss_pred             hhh----------------------hccC--ChhHHHHHHHHHHhhccCCcEEEEee
Q 042119          208 LAA----------------------LVGM--SKEEKLTILGHIRKYMKDGGILLVRS  240 (286)
Q Consensus       208 ~aa----------------------lvg~--~~~~k~~vl~~l~~~l~pgg~lv~r~  240 (286)
                      ..-                      +.|.  ..+-..++++++.++|+|||.+++-.
T Consensus       325 SNPPYI~~~e~~l~~~~v~~EP~~AL~gG~dGL~~yr~Ii~~a~~~LkpgG~lilEi  381 (423)
T PRK14966        325 SNPPYIENGDKHLLQGDLRFEPQIALTDFSDGLSCIRTLAQGAPDRLAEGGFLLLEH  381 (423)
T ss_pred             ECCCCCCcchhhhcchhhhcCHHHHhhCCCchHHHHHHHHHHHHHhcCCCcEEEEEE
Confidence            632                      1110  00124467788889999999988754

>PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional

Probab=99.01  E-value=2e-09  Score=111.23  Aligned_cols=107  Identities=12%  Similarity=0.206  Sum_probs=83.8

Q ss_pred             CCCCEEEEeccCCChhhHHHHHhhcCCCc-EEEEEeCChHHHHHHHHHHHhcCCCC-CCeEEEEccccchhhcC-CCcce
Q 042119          129 VQPKKVAFVGSGPMPLTSIIMAKHHLTST-HFDNFDIDEAANDVARSIVASDAEFE-GRMKFLTRDIMEVKEQL-GEYDC  205 (286)
Q Consensus       129 ~~~~~VL~IG~G~lp~tai~lA~~~~~g~-~V~~iDid~~ai~~Ar~~~~~~g~l~-~~i~f~~~D~~~~~~~l-~~fD~  205 (286)
                      .++++||++|||+++ .++.+|+   .|+ +|+++|+|+.+++.|+++++..| +. ++++|+++|+.+....+ ..||+
T Consensus       537 ~~g~rVLDlf~gtG~-~sl~aa~---~Ga~~V~~vD~s~~al~~a~~N~~~ng-~~~~~v~~i~~D~~~~l~~~~~~fDl  611 (702)
T PRK11783        537 AKGKDFLNLFAYTGT-ASVHAAL---GGAKSTTTVDMSNTYLEWAERNFALNG-LSGRQHRLIQADCLAWLKEAREQFDL  611 (702)
T ss_pred             cCCCeEEEcCCCCCH-HHHHHHH---CCCCEEEEEeCCHHHHHHHHHHHHHhC-CCccceEEEEccHHHHHHHcCCCcCE
Confidence            457999999999755 5677776   355 69999999999999999999999 65 68999999998765433 47999


Q ss_pred             eehhhh--cc--------CChhHHHHHHHHHHhhccCCcEEEEee
Q 042119          206 IFLAAL--VG--------MSKEEKLTILGHIRKYMKDGGILLVRS  240 (286)
Q Consensus       206 V~~aal--vg--------~~~~~k~~vl~~l~~~l~pgg~lv~r~  240 (286)
                      |+++--  ..        .......+++..+.++|+|||.+++-+
T Consensus       612 IilDPP~f~~~~~~~~~~~~~~~y~~l~~~a~~lL~~gG~l~~~~  656 (702)
T PRK11783        612 IFIDPPTFSNSKRMEDSFDVQRDHVALIKDAKRLLRPGGTLYFSN  656 (702)
T ss_pred             EEECCCCCCCCCccchhhhHHHHHHHHHHHHHHHcCCCCEEEEEe
Confidence            997631  10        012345678999999999999998865

>PRK11188 rrmJ 23S rRNA methyltransferase J; Provisional

Probab=99.01  E-value=3.5e-09  Score=93.94  Aligned_cols=134  Identities=14%  Similarity=0.168  Sum_probs=87.1

Q ss_pred             CCCCCEEEEeccCCChhhHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEccccchh--------hc
Q 042119          128 VVQPKKVAFVGSGPMPLTSIIMAKHHLTSTHFDNFDIDEAANDVARSIVASDAEFEGRMKFLTRDIMEVK--------EQ  199 (286)
Q Consensus       128 ~~~~~~VL~IG~G~lp~tai~lA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~g~l~~~i~f~~~D~~~~~--------~~  199 (286)
                      ..++.+||||||||+..|. .+++...++.+|++||+++ +          .+ . .+++++++|+.+..        ..
T Consensus        49 ~~~~~~VLDlG~GtG~~t~-~l~~~~~~~~~V~aVDi~~-~----------~~-~-~~v~~i~~D~~~~~~~~~i~~~~~  114 (209)
T PRK11188         49 FKPGMTVVDLGAAPGGWSQ-YAVTQIGDKGRVIACDILP-M----------DP-I-VGVDFLQGDFRDELVLKALLERVG  114 (209)
T ss_pred             CCCCCEEEEEcccCCHHHH-HHHHHcCCCceEEEEeccc-c----------cC-C-CCcEEEecCCCChHHHHHHHHHhC
Confidence            4778899999999976654 4555334568999999998 1          22 1 35899999998743        23


Q ss_pred             CCCcceeehhhhc---cCChhH-------HHHHHHHHHhhccCCcEEEEeecCc--ceeeecccCCcccc-cCcEEEEEe
Q 042119          200 LGEYDCIFLAALV---GMSKEE-------KLTILGHIRKYMKDGGILLVRSAKG--ARAFLYPVVVEHDL-LDFEVLSAV  266 (286)
Q Consensus       200 l~~fD~V~~aalv---g~~~~~-------k~~vl~~l~~~l~pgg~lv~r~~~g--~r~~lyp~v~~~~l-~gf~~~~~~  266 (286)
                      .+.||+|+.+...   +.+..+       -..+++.+.+.|+|||.+++....+  ...++      ..+ ..|+...+.
T Consensus       115 ~~~~D~V~S~~~~~~~g~~~~d~~~~~~~~~~~L~~~~~~LkpGG~~vi~~~~~~~~~~~l------~~l~~~f~~v~~~  188 (209)
T PRK11188        115 DSKVQVVMSDMAPNMSGTPAVDIPRAMYLVELALDMCRDVLAPGGSFVVKVFQGEGFDEYL------REIRSLFTKVKVR  188 (209)
T ss_pred             CCCCCEEecCCCCccCCChHHHHHHHHHHHHHHHHHHHHHcCCCCEEEEEEecCcCHHHHH------HHHHhCceEEEEE
Confidence            3579999964311   111001       1468999999999999999965332  11222      123 468888888


Q ss_pred             cCccc---ceeeeEEEee
Q 042119          267 HPNDD---VINSVVLVRN  281 (286)
Q Consensus       267 ~P~~~---vinsvi~~r~  281 (286)
                      .|...   -...+++++.
T Consensus       189 Kp~ssr~~s~e~~~~~~~  206 (209)
T PRK11188        189 KPDSSRARSREVYIVATG  206 (209)
T ss_pred             CCccccccCceeEEEeec
Confidence            88653   2223555554

>PLN02823 spermine synthase

Probab=98.99  E-value=2.9e-09  Score=101.06  Aligned_cols=110  Identities=19%  Similarity=0.257  Sum_probs=82.5

Q ss_pred             CCCCEEEEeccCCChhhHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcC--CCCCCeEEEEccccchhhcC-CCcce
Q 042119          129 VQPKKVAFVGSGPMPLTSIIMAKHHLTSTHFDNFDIDEAANDVARSIVASDA--EFEGRMKFLTRDIMEVKEQL-GEYDC  205 (286)
Q Consensus       129 ~~~~~VL~IG~G~lp~tai~lA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~g--~l~~~i~f~~~D~~~~~~~l-~~fD~  205 (286)
                      ..+++||.||+| .|.++..+.+ +.+..+|+.+|+|++.++.|++.+...+  .-..|++++.+|+.+..... +.||+
T Consensus       102 ~~pk~VLiiGgG-~G~~~re~l~-~~~~~~v~~VEiD~~vv~lar~~~~~~~~~~~dprv~v~~~Da~~~L~~~~~~yDv  179 (336)
T PLN02823        102 PNPKTVFIMGGG-EGSTAREVLR-HKTVEKVVMCDIDQEVVDFCRKHLTVNREAFCDKRLELIINDARAELEKRDEKFDV  179 (336)
T ss_pred             CCCCEEEEECCC-chHHHHHHHh-CCCCCeEEEEECCHHHHHHHHHhcccccccccCCceEEEEChhHHHHhhCCCCccE
Confidence            467899999999 5777776766 3456789999999999999999875321  01379999999998876543 47999


Q ss_pred             eehhhhccCC--hhH---HHHHHH-HHHhhccCCcEEEEee
Q 042119          206 IFLAALVGMS--KEE---KLTILG-HIRKYMKDGGILLVRS  240 (286)
Q Consensus       206 V~~aalvg~~--~~~---k~~vl~-~l~~~l~pgg~lv~r~  240 (286)
                      ||++..-...  ...   -.++++ .+.+.|+|||++++..
T Consensus       180 Ii~D~~dp~~~~~~~~Lyt~eF~~~~~~~~L~p~Gvlv~q~  220 (336)
T PLN02823        180 IIGDLADPVEGGPCYQLYTKSFYERIVKPKLNPGGIFVTQA  220 (336)
T ss_pred             EEecCCCccccCcchhhccHHHHHHHHHHhcCCCcEEEEec
Confidence            9998542110  010   246887 8999999999998864

>PF01564 Spermine_synth: Spermine/spermidine synthase; InterPro: IPR001045 Synonym(s): Spermidine aminopropyltransferase A group of polyamine biosynthetic enzymes involved in the fifth (last) step in the biosynthesis of spermidine from arginine and methionine which includes; spermidine synthase (2

Probab=98.98  E-value=2.1e-09  Score=97.77  Aligned_cols=110  Identities=19%  Similarity=0.275  Sum_probs=82.8

Q ss_pred             CCCCEEEEeccCCChhhHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCC--CCCCeEEEEccccchhhcCC--Ccc
Q 042119          129 VQPKKVAFVGSGPMPLTSIIMAKHHLTSTHFDNFDIDEAANDVARSIVASDAE--FEGRMKFLTRDIMEVKEQLG--EYD  204 (286)
Q Consensus       129 ~~~~~VL~IG~G~lp~tai~lA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~g~--l~~~i~f~~~D~~~~~~~l~--~fD  204 (286)
                      ..+++||.||.|. |.++-.+.+ +.+-.+|+.+|+||+.++.|++.+.....  -..|++++.+|+........  .||
T Consensus        75 ~~p~~VLiiGgG~-G~~~~ell~-~~~~~~i~~VEiD~~Vv~~a~~~f~~~~~~~~d~r~~i~~~Dg~~~l~~~~~~~yD  152 (246)
T PF01564_consen   75 PNPKRVLIIGGGD-GGTARELLK-HPPVESITVVEIDPEVVELARKYFPEFSEGLDDPRVRIIIGDGRKFLKETQEEKYD  152 (246)
T ss_dssp             SST-EEEEEESTT-SHHHHHHTT-STT-SEEEEEES-HHHHHHHHHHTHHHHTTGGSTTEEEEESTHHHHHHTSSST-EE
T ss_pred             CCcCceEEEcCCC-hhhhhhhhh-cCCcceEEEEecChHHHHHHHHhchhhccccCCCceEEEEhhhHHHHHhccCCccc
Confidence            4799999999995 666667766 45568999999999999999998765321  13799999999988766543  599


Q ss_pred             eeehhhhccCChhH---HHHHHHHHHhhccCCcEEEEee
Q 042119          205 CIFLAALVGMSKEE---KLTILGHIRKYMKDGGILLVRS  240 (286)
Q Consensus       205 ~V~~aalvg~~~~~---k~~vl~~l~~~l~pgg~lv~r~  240 (286)
                      +|+++..-......   -.++++.+.+.|+|||++++..
T Consensus       153 vIi~D~~dp~~~~~~l~t~ef~~~~~~~L~~~Gv~v~~~  191 (246)
T PF01564_consen  153 VIIVDLTDPDGPAPNLFTREFYQLCKRRLKPDGVLVLQA  191 (246)
T ss_dssp             EEEEESSSTTSCGGGGSSHHHHHHHHHHEEEEEEEEEEE
T ss_pred             EEEEeCCCCCCCcccccCHHHHHHHHhhcCCCcEEEEEc
Confidence            99988753111112   2589999999999999999986

5.1.16 from EC), spermine synthase (2.5.1.22 from EC) and putrescine N-methyltransferase (2.1.1.53 from EC) []. The Thermotoga maritima spermidine synthase monomer consists of two domains: an N-terminal domain composed of six beta-strands, and a Rossmann-like C- terminal domain []. The larger C-terminal catalytic core domain consists of a seven-stranded beta-sheet flanked by nine alpha helices. This domain resembles a topology observed in a number of nucleotide and dinucleotide-binding enzymes, and in S-adenosyl-L-methionine (AdoMet)- dependent methyltransferase (MTases) [].; GO: 0003824 catalytic activity; PDB: 2E5W_C 2ZSU_E 2O0L_B 2O05_B 2O06_B 2O07_B 3RW9_B 2PWP_A 2HTE_B 3RIE_B ....

>smart00650 rADc Ribosomal RNA adenine dimethylases

Probab=98.96  E-value=1.3e-08  Score=86.83  Aligned_cols=146  Identities=16%  Similarity=0.140  Sum_probs=92.4

Q ss_pred             hcCCCCCCEEEEeccCCChhhHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEccccchhhcCCCcc
Q 042119          125 ENGVVQPKKVAFVGSGPMPLTSIIMAKHHLTSTHFDNFDIDEAANDVARSIVASDAEFEGRMKFLTRDIMEVKEQLGEYD  204 (286)
Q Consensus       125 ~~~~~~~~~VL~IG~G~lp~tai~lA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~g~l~~~i~f~~~D~~~~~~~l~~fD  204 (286)
                      .....++++|||||||++.+ +..+++   .+.+|+++|+|+.+++.+++.+..    .++++++++|+.+.......||
T Consensus         8 ~~~~~~~~~vLEiG~G~G~l-t~~l~~---~~~~v~~vE~~~~~~~~~~~~~~~----~~~v~ii~~D~~~~~~~~~~~d   79 (169)
T smart00650        8 AANLRPGDTVLEIGPGKGAL-TEELLE---RAARVTAIEIDPRLAPRLREKFAA----ADNLTVIHGDALKFDLPKLQPY   79 (169)
T ss_pred             hcCCCCcCEEEEECCCccHH-HHHHHh---cCCeEEEEECCHHHHHHHHHHhcc----CCCEEEEECchhcCCccccCCC
Confidence            34556788999999997554 456666   368999999999999999998754    2589999999988765434599


Q ss_pred             eeehhhhccCChhHHHHHHHHHHhh--ccCCcEEEEeecCcceeeeccc------CCc-----ccc-cCcEEE-EEecCc
Q 042119          205 CIFLAALVGMSKEEKLTILGHIRKY--MKDGGILLVRSAKGARAFLYPV------VVE-----HDL-LDFEVL-SAVHPN  269 (286)
Q Consensus       205 ~V~~aalvg~~~~~k~~vl~~l~~~--l~pgg~lv~r~~~g~r~~lyp~------v~~-----~~l-~gf~~~-~~~~P~  269 (286)
                      .|+..-...    .-.+++..+.+.  ..++|++++...-.-|-.--|-      ...     .+. ..|++- ..++|.
T Consensus        80 ~vi~n~Py~----~~~~~i~~~l~~~~~~~~~~l~~q~e~a~rl~~~~~~~~y~~lsv~~~~~~~~~~~~~v~~~~F~P~  155 (169)
T smart00650       80 KVVGNLPYN----ISTPILFKLLEEPPAFRDAVLMVQKEVARRLAAKPGSKDYGRLSVLLQPYFDVKILFKVPPEAFRPP  155 (169)
T ss_pred             EEEECCCcc----cHHHHHHHHHhcCCCcceEEEEEEHHHhHHhcCCCCCCcccHHHHHHHHHeeEEEEEEEChhhCCCC
Confidence            988543221    112455555543  3478888886421111111110      000     011 122222 456799


Q ss_pred             ccceeeeEEEeec
Q 042119          270 DDVINSVVLVRNS  282 (286)
Q Consensus       270 ~~vinsvi~~r~~  282 (286)
                      ++|--+|+..+++
T Consensus       156 PkV~s~~~~~~~~  168 (169)
T smart00650      156 PKVDSAVVRLERR  168 (169)
T ss_pred             CCceEEEEEEEEC
Confidence            9998888877654

>PRK03612 spermidine synthase; Provisional

Probab=98.95  E-value=3.7e-09  Score=105.75  Aligned_cols=109  Identities=18%  Similarity=0.336  Sum_probs=80.5

Q ss_pred             CCCCEEEEeccCCChhhHHHHHhhcCCC-cEEEEEeCChHHHHHHHHH--HHhcC--CC-CCCeEEEEccccchhhcC-C
Q 042119          129 VQPKKVAFVGSGPMPLTSIIMAKHHLTS-THFDNFDIDEAANDVARSI--VASDA--EF-EGRMKFLTRDIMEVKEQL-G  201 (286)
Q Consensus       129 ~~~~~VL~IG~G~lp~tai~lA~~~~~g-~~V~~iDid~~ai~~Ar~~--~~~~g--~l-~~~i~f~~~D~~~~~~~l-~  201 (286)
                      +++++||+||||. |.++..+++  .++ .+|+++|+|+++++.|++.  +....  .+ .+|++++++|+.+..... +
T Consensus       296 ~~~~rVL~IG~G~-G~~~~~ll~--~~~v~~v~~VEid~~vi~~ar~~~~l~~~~~~~~~dprv~vi~~Da~~~l~~~~~  372 (521)
T PRK03612        296 ARPRRVLVLGGGD-GLALREVLK--YPDVEQVTLVDLDPAMTELARTSPALRALNGGALDDPRVTVVNDDAFNWLRKLAE  372 (521)
T ss_pred             CCCCeEEEEcCCc-cHHHHHHHh--CCCcCeEEEEECCHHHHHHHHhCCcchhhhccccCCCceEEEEChHHHHHHhCCC
Confidence            5789999999995 666667776  255 8999999999999999993  32211  02 268999999998765433 4


Q ss_pred             CcceeehhhhccCChh-H---HHHHHHHHHhhccCCcEEEEee
Q 042119          202 EYDCIFLAALVGMSKE-E---KLTILGHIRKYMKDGGILLVRS  240 (286)
Q Consensus       202 ~fD~V~~aalvg~~~~-~---k~~vl~~l~~~l~pgg~lv~r~  240 (286)
                      .||+|+.+..-..... .   ..++++.+.++|+|||++++..
T Consensus       373 ~fDvIi~D~~~~~~~~~~~L~t~ef~~~~~~~L~pgG~lv~~~  415 (521)
T PRK03612        373 KFDVIIVDLPDPSNPALGKLYSVEFYRLLKRRLAPDGLLVVQS  415 (521)
T ss_pred             CCCEEEEeCCCCCCcchhccchHHHHHHHHHhcCCCeEEEEec
Confidence            7999998753211111 1   2468999999999999999865

>PRK10909 rsmD 16S rRNA m(2)G966-methyltransferase; Provisional

Probab=98.94  E-value=9.9e-09  Score=90.64  Aligned_cols=106  Identities=11%  Similarity=0.123  Sum_probs=78.4

Q ss_pred             CCCCEEEEeccCCChhhHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEccccchhhcC-CCcceee
Q 042119          129 VQPKKVAFVGSGPMPLTSIIMAKHHLTSTHFDNFDIDEAANDVARSIVASDAEFEGRMKFLTRDIMEVKEQL-GEYDCIF  207 (286)
Q Consensus       129 ~~~~~VL~IG~G~lp~tai~lA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~g~l~~~i~f~~~D~~~~~~~l-~~fD~V~  207 (286)
                      ..+.+|||+|||.+.++...+++   ...+|+++|+++++++.++++++..| + ++++++++|+.+..... ..||+||
T Consensus        52 ~~~~~vLDl~~GsG~l~l~~lsr---~a~~V~~vE~~~~a~~~a~~Nl~~~~-~-~~v~~~~~D~~~~l~~~~~~fDlV~  126 (199)
T PRK10909         52 IVDARCLDCFAGSGALGLEALSR---YAAGATLLEMDRAVAQQLIKNLATLK-A-GNARVVNTNALSFLAQPGTPHNVVF  126 (199)
T ss_pred             cCCCEEEEcCCCccHHHHHHHHc---CCCEEEEEECCHHHHHHHHHHHHHhC-C-CcEEEEEchHHHHHhhcCCCceEEE
Confidence            45789999999976555445555   34799999999999999999999999 4 57999999997754322 3599999


Q ss_pred             hhhhccCChhHHHHHHHHHHhh--ccCCcEEEEeec
Q 042119          208 LAALVGMSKEEKLTILGHIRKY--MKDGGILLVRSA  241 (286)
Q Consensus       208 ~aalvg~~~~~k~~vl~~l~~~--l~pgg~lv~r~~  241 (286)
                      ++---  ...-..++++.+.+.  ++|++++++...
T Consensus       127 ~DPPy--~~g~~~~~l~~l~~~~~l~~~~iv~ve~~  160 (199)
T PRK10909        127 VDPPF--RKGLLEETINLLEDNGWLADEALIYVESE  160 (199)
T ss_pred             ECCCC--CCChHHHHHHHHHHCCCcCCCcEEEEEec
Confidence            87421  112244566666653  789998888754

>COG0421 SpeE Spermidine synthase [Amino acid transport and metabolism]

Probab=98.91  E-value=7.7e-09  Score=95.88  Aligned_cols=108  Identities=21%  Similarity=0.318  Sum_probs=86.5

Q ss_pred             CCCCEEEEeccCCChhhHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcC--CCCCCeEEEEccccchhhcCC-Ccce
Q 042119          129 VQPKKVAFVGSGPMPLTSIIMAKHHLTSTHFDNFDIDEAANDVARSIVASDA--EFEGRMKFLTRDIMEVKEQLG-EYDC  205 (286)
Q Consensus       129 ~~~~~VL~IG~G~lp~tai~lA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~g--~l~~~i~f~~~D~~~~~~~l~-~fD~  205 (286)
                      ..+++||.||.|. |.|+-.+.+ +.+-.++|.+||||+.+++||+.+....  ....|++++.+|+.+...... .||+
T Consensus        75 ~~pk~VLiiGgGd-G~tlRevlk-h~~ve~i~~VEID~~Vi~~ar~~l~~~~~~~~dpRv~i~i~Dg~~~v~~~~~~fDv  152 (282)
T COG0421          75 PNPKRVLIIGGGD-GGTLREVLK-HLPVERITMVEIDPAVIELARKYLPEPSGGADDPRVEIIIDDGVEFLRDCEEKFDV  152 (282)
T ss_pred             CCCCeEEEECCCc-cHHHHHHHh-cCCcceEEEEEcCHHHHHHHHHhccCcccccCCCceEEEeccHHHHHHhCCCcCCE
Confidence            4457999999996 556666666 5778999999999999999999976543  123899999999998877665 5999


Q ss_pred             eehhhhccCChhH-----HHHHHHHHHhhccCCcEEEEee
Q 042119          206 IFLAALVGMSKEE-----KLTILGHIRKYMKDGGILLVRS  240 (286)
Q Consensus       206 V~~aalvg~~~~~-----k~~vl~~l~~~l~pgg~lv~r~  240 (286)
                      |++++.=+  ..+     -.++++.+++.|+++|+++..+
T Consensus       153 Ii~D~tdp--~gp~~~Lft~eFy~~~~~~L~~~Gi~v~q~  190 (282)
T COG0421         153 IIVDSTDP--VGPAEALFTEEFYEGCRRALKEDGIFVAQA  190 (282)
T ss_pred             EEEcCCCC--CCcccccCCHHHHHHHHHhcCCCcEEEEec
Confidence            99987522  011     2579999999999999999994

>PF00891 Methyltransf_2: O-methyltransferase; InterPro: IPR001077 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals

Probab=98.91  E-value=1.1e-08  Score=91.95  Aligned_cols=100  Identities=26%  Similarity=0.361  Sum_probs=79.6

Q ss_pred             CCCCCCEEEEeccCCChhhHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEccccchhhcCCCccee
Q 042119          127 GVVQPKKVAFVGSGPMPLTSIIMAKHHLTSTHFDNFDIDEAANDVARSIVASDAEFEGRMKFLTRDIMEVKEQLGEYDCI  206 (286)
Q Consensus       127 ~~~~~~~VL~IG~G~lp~tai~lA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~g~l~~~i~f~~~D~~~~~~~l~~fD~V  206 (286)
                      .....++|+|||+|. |.-++.+++ .+|+.+++.+|. |+.++.+++     .   +||+|+.||..   .++..+|++
T Consensus        97 d~~~~~~vvDvGGG~-G~~~~~l~~-~~P~l~~~v~Dl-p~v~~~~~~-----~---~rv~~~~gd~f---~~~P~~D~~  162 (241)
T PF00891_consen   97 DFSGFKTVVDVGGGS-GHFAIALAR-AYPNLRATVFDL-PEVIEQAKE-----A---DRVEFVPGDFF---DPLPVADVY  162 (241)
T ss_dssp             TTTTSSEEEEET-TT-SHHHHHHHH-HSTTSEEEEEE--HHHHCCHHH-----T---TTEEEEES-TT---TCCSSESEE
T ss_pred             cccCccEEEeccCcc-hHHHHHHHH-HCCCCcceeecc-Hhhhhcccc-----c---cccccccccHH---hhhccccce
Confidence            346778999999997 455566666 489999999999 899999998     2   79999999985   344459999


Q ss_pred             ehhhhc-cCChhHHHHHHHHHHhhccCC--cEEEEee
Q 042119          207 FLAALV-GMSKEEKLTILGHIRKYMKDG--GILLVRS  240 (286)
Q Consensus       207 ~~aalv-g~~~~~k~~vl~~l~~~l~pg--g~lv~r~  240 (286)
                      ++...+ .++.++-.++|+++++.|+||  |+|++-+
T Consensus       163 ~l~~vLh~~~d~~~~~iL~~~~~al~pg~~g~llI~e  199 (241)
T PF00891_consen  163 LLRHVLHDWSDEDCVKILRNAAAALKPGKDGRLLIIE  199 (241)
T ss_dssp             EEESSGGGS-HHHHHHHHHHHHHHSEECTTEEEEEEE
T ss_pred             eeehhhhhcchHHHHHHHHHHHHHhCCCCCCeEEEEe
Confidence            987765 678888899999999999999  9998875

The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This domain includes a range of O-methyltransferases some of which utilise S-adenosyl methionine as substrate []. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. In eukaryotes, DNA methylation has been implicated in the control of several cellular processes, including differentiation, gene regulation, and embryonic development. O-methyltransferases have a common catalytic domain structure, which might be universal among S-adenosyl-L-methionine (AdoMet)-dependent methyltransferases []. Comparative analysis of the predicted amino acid sequences of a number of plant O-methyltransferase cDNA clones show that they share some 32-71% sequence identity, and can be grouped according to the different compounds they utilise as substrates [].; GO: 0008171 O-methyltransferase activity; PDB: 1FPQ_A 1FP1_D 3P9K_B 3P9I_D 3P9C_A 3I53_A 3I5U_A 3I64_A 3I58_A 1ZG3_A ....

>PRK03522 rumB 23S rRNA methyluridine methyltransferase; Reviewed

Probab=98.89  E-value=2.7e-08  Score=93.46  Aligned_cols=100  Identities=14%  Similarity=0.128  Sum_probs=74.6

Q ss_pred             CCCCEEEEeccCCChhhHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEccccchhhcC-CCcceee
Q 042119          129 VQPKKVAFVGSGPMPLTSIIMAKHHLTSTHFDNFDIDEAANDVARSIVASDAEFEGRMKFLTRDIMEVKEQL-GEYDCIF  207 (286)
Q Consensus       129 ~~~~~VL~IG~G~lp~tai~lA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~g~l~~~i~f~~~D~~~~~~~l-~~fD~V~  207 (286)
                      .++.+|||+|||. |.-++.+|+   .+.+|+|+|+++++++.|++.++..| + ++++|+++|+.+..... +.||+|+
T Consensus       172 ~~~~~VLDl~cG~-G~~sl~la~---~~~~V~gvD~s~~av~~A~~n~~~~~-l-~~v~~~~~D~~~~~~~~~~~~D~Vv  245 (315)
T PRK03522        172 LPPRSMWDLFCGV-GGFGLHCAT---PGMQLTGIEISAEAIACAKQSAAELG-L-TNVQFQALDSTQFATAQGEVPDLVL  245 (315)
T ss_pred             cCCCEEEEccCCC-CHHHHHHHh---cCCEEEEEeCCHHHHHHHHHHHHHcC-C-CceEEEEcCHHHHHHhcCCCCeEEE
Confidence            3578999999997 566788888   67899999999999999999999999 5 68999999998765432 4699999


Q ss_pred             hhhhc-cCChhHHHHHHHHHHhhccCCcEEEEe
Q 042119          208 LAALV-GMSKEEKLTILGHIRKYMKDGGILLVR  239 (286)
Q Consensus       208 ~aalv-g~~~~~k~~vl~~l~~~l~pgg~lv~r  239 (286)
                      ++--- |+    ...+++.+.+ ++|++++.+.
T Consensus       246 ~dPPr~G~----~~~~~~~l~~-~~~~~ivyvs  273 (315)
T PRK03522        246 VNPPRRGI----GKELCDYLSQ-MAPRFILYSS  273 (315)
T ss_pred             ECCCCCCc----cHHHHHHHHH-cCCCeEEEEE
Confidence            87321 21    1234444443 5676655543

>COG2813 RsmC 16S RNA G1207 methylase RsmC [Translation, ribosomal structure and biogenesis]

Probab=98.87  E-value=2.4e-08  Score=92.79  Aligned_cols=107  Identities=21%  Similarity=0.305  Sum_probs=80.0

Q ss_pred             CCCCCEEEEeccCCChhhHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEccccchhhcCCCcceee
Q 042119          128 VVQPKKVAFVGSGPMPLTSIIMAKHHLTSTHFDNFDIDEAANDVARSIVASDAEFEGRMKFLTRDIMEVKEQLGEYDCIF  207 (286)
Q Consensus       128 ~~~~~~VL~IG~G~lp~tai~lA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~g~l~~~i~f~~~D~~~~~~~l~~fD~V~  207 (286)
                      ...+.+|||+|||. |.-++.+|+ ..|.+++|-+|+|..|++.||++++..+ ++.. .+..+|+.+-..  ++||+|+
T Consensus       156 ~~~~~~vlDlGCG~-Gvlg~~la~-~~p~~~vtmvDvn~~Av~~ar~Nl~~N~-~~~~-~v~~s~~~~~v~--~kfd~Ii  229 (300)
T COG2813         156 PDLGGKVLDLGCGY-GVLGLVLAK-KSPQAKLTLVDVNARAVESARKNLAANG-VENT-EVWASNLYEPVE--GKFDLII  229 (300)
T ss_pred             ccCCCcEEEeCCCc-cHHHHHHHH-hCCCCeEEEEecCHHHHHHHHHhHHHcC-CCcc-EEEEeccccccc--ccccEEE
Confidence            34556999999996 555677887 4889999999999999999999999988 4443 677788755333  2799998


Q ss_pred             hhhhc--cCCh--hHHHHHHHHHHhhccCCcEEEEee
Q 042119          208 LAALV--GMSK--EEKLTILGHIRKYMKDGGILLVRS  240 (286)
Q Consensus       208 ~aalv--g~~~--~~k~~vl~~l~~~l~pgg~lv~r~  240 (286)
                      ..--+  |...  .--++++..-.++|++||-|-+.-
T Consensus       230 sNPPfh~G~~v~~~~~~~~i~~A~~~L~~gGeL~iVa  266 (300)
T COG2813         230 SNPPFHAGKAVVHSLAQEIIAAAARHLKPGGELWIVA  266 (300)
T ss_pred             eCCCccCCcchhHHHHHHHHHHHHHhhccCCEEEEEE
Confidence            54322  2211  223579999999999999876653

>PF08003 Methyltransf_9: Protein of unknown function (DUF1698); InterPro: IPR010017 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals

Probab=98.87  E-value=1.7e-08  Score=93.83  Aligned_cols=106  Identities=16%  Similarity=0.183  Sum_probs=80.4

Q ss_pred             CCCCCEEEEeccCCChhhHHHHHhhcCCCc-EEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEccccchhhcCCCccee
Q 042119          128 VVQPKKVAFVGSGPMPLTSIIMAKHHLTST-HFDNFDIDEAANDVARSIVASDAEFEGRMKFLTRDIMEVKEQLGEYDCI  206 (286)
Q Consensus       128 ~~~~~~VL~IG~G~lp~tai~lA~~~~~g~-~V~~iDid~~ai~~Ar~~~~~~g~l~~~i~f~~~D~~~~~~~l~~fD~V  206 (286)
                      .-.+++|||||||. |+=+..|++   .|+ .|+|||.++--....+-+-+-.| ...++.+.---+.+++. .+.||+|
T Consensus       113 ~L~gk~VLDIGC~n-GY~~frM~~---~GA~~ViGiDP~~lf~~QF~~i~~~lg-~~~~~~~lplgvE~Lp~-~~~FDtV  186 (315)
T PF08003_consen  113 DLKGKRVLDIGCNN-GYYSFRMLG---RGAKSVIGIDPSPLFYLQFEAIKHFLG-QDPPVFELPLGVEDLPN-LGAFDTV  186 (315)
T ss_pred             CcCCCEEEEecCCC-cHHHHHHhh---cCCCEEEEECCChHHHHHHHHHHHHhC-CCccEEEcCcchhhccc-cCCcCEE
Confidence            46789999999996 677777877   455 69999999988877666656666 33344444334556665 6789999


Q ss_pred             ehhhhccCChhHHHHHHHHHHhhccCCcEEEEee
Q 042119          207 FLAALVGMSKEEKLTILGHIRKYMKDGGILLVRS  240 (286)
Q Consensus       207 ~~aalvg~~~~~k~~vl~~l~~~l~pgg~lv~r~  240 (286)
                      |.... -.+..+....|.+++..|+|||.+++-+
T Consensus       187 F~MGV-LYHrr~Pl~~L~~Lk~~L~~gGeLvLET  219 (315)
T PF08003_consen  187 FSMGV-LYHRRSPLDHLKQLKDSLRPGGELVLET  219 (315)
T ss_pred             EEeee-hhccCCHHHHHHHHHHhhCCCCEEEEEE
Confidence            97644 3455788899999999999999999876

The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This entry represents a set of bacterial AdoMet-dependent tRNA (mo5U34)-methyltransferases. These enzymes catalyse the conversion of 5-hydroxyuridine (ho5U) to 5-methoxyuridine (mo5U) at the wobble position (34) of tRNA []. The 5-methoxyuridine is subsequently converted to uridine-5-oxyacetic acid, a modified nucleoside that is apparently necessary for the efficient decoding of G-ending Pro, Ala, and Val codons in these organisms [].; GO: 0016300 tRNA (uracil) methyltransferase activity, 0002098 tRNA wobble uridine modification

>PRK13168 rumA 23S rRNA m(5)U1939 methyltransferase; Reviewed

Probab=98.87  E-value=2.2e-08  Score=98.27  Aligned_cols=102  Identities=16%  Similarity=0.175  Sum_probs=76.2

Q ss_pred             CCCCCCEEEEeccCCChhhHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEccccchhhc----CCC
Q 042119          127 GVVQPKKVAFVGSGPMPLTSIIMAKHHLTSTHFDNFDIDEAANDVARSIVASDAEFEGRMKFLTRDIMEVKEQ----LGE  202 (286)
Q Consensus       127 ~~~~~~~VL~IG~G~lp~tai~lA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~g~l~~~i~f~~~D~~~~~~~----l~~  202 (286)
                      ...++.+|||+|||+ |.-++.+|+   .+.+|+|+|+|++|++.|+++++..| + ++++|+++|+.+....    .+.
T Consensus       294 ~~~~~~~VLDlgcGt-G~~sl~la~---~~~~V~gvD~s~~al~~A~~n~~~~~-~-~~v~~~~~d~~~~l~~~~~~~~~  367 (443)
T PRK13168        294 DPQPGDRVLDLFCGL-GNFTLPLAR---QAAEVVGVEGVEAMVERARENARRNG-L-DNVTFYHANLEEDFTDQPWALGG  367 (443)
T ss_pred             cCCCCCEEEEEeccC-CHHHHHHHH---hCCEEEEEeCCHHHHHHHHHHHHHcC-C-CceEEEEeChHHhhhhhhhhcCC
Confidence            346778999999997 555677887   45899999999999999999999988 4 5799999999764321    246


Q ss_pred             cceeehhhhccCChhHHHHHHHHHHhhccCCcEEEEe
Q 042119          203 YDCIFLAALVGMSKEEKLTILGHIRKYMKDGGILLVR  239 (286)
Q Consensus       203 fD~V~~aalvg~~~~~k~~vl~~l~~~l~pgg~lv~r  239 (286)
                      ||+|+++---    ....++++.+.+ ++|++++.+.
T Consensus       368 fD~Vi~dPPr----~g~~~~~~~l~~-~~~~~ivyvS  399 (443)
T PRK13168        368 FDKVLLDPPR----AGAAEVMQALAK-LGPKRIVYVS  399 (443)
T ss_pred             CCEEEECcCC----cChHHHHHHHHh-cCCCeEEEEE
Confidence            9999976321    112245666665 5888776665

>PLN02232 ubiquinone biosynthesis methyltransferase

Probab=98.85  E-value=6.9e-09  Score=88.17  Aligned_cols=79  Identities=11%  Similarity=0.182  Sum_probs=63.4

Q ss_pred             EEEeCChHHHHHHHHHHHhc--CCCCCCeEEEEccccchhhcCCCcceeehhhhccCChhHHHHHHHHHHhhccCCcEEE
Q 042119          160 DNFDIDEAANDVARSIVASD--AEFEGRMKFLTRDIMEVKEQLGEYDCIFLAALVGMSKEEKLTILGHIRKYMKDGGILL  237 (286)
Q Consensus       160 ~~iDid~~ai~~Ar~~~~~~--g~l~~~i~f~~~D~~~~~~~l~~fD~V~~aalvg~~~~~k~~vl~~l~~~l~pgg~lv  237 (286)
                      +|+|+|++|++.|++..+..  + ...+++|+++|+.+++.+.+.||+|+....+. ..+++.+++++++++|||||.++
T Consensus         1 ~GvD~S~~ML~~A~~~~~~~~~~-~~~~i~~~~~d~~~lp~~~~~fD~v~~~~~l~-~~~d~~~~l~ei~rvLkpGG~l~   78 (160)
T PLN02232          1 MGLDFSSEQLAVAATRQSLKARS-CYKCIEWIEGDAIDLPFDDCEFDAVTMGYGLR-NVVDRLRAMKEMYRVLKPGSRVS   78 (160)
T ss_pred             CeEcCCHHHHHHHHHhhhccccc-CCCceEEEEechhhCCCCCCCeeEEEecchhh-cCCCHHHHHHHHHHHcCcCeEEE
Confidence            58999999999998776532  2 23589999999999887767899998654332 23678899999999999999998


Q ss_pred             Eee
Q 042119          238 VRS  240 (286)
Q Consensus       238 ~r~  240 (286)
                      +.+
T Consensus        79 i~d   81 (160)
T PLN02232         79 ILD   81 (160)
T ss_pred             EEE
Confidence            764

>TIGR00479 rumA 23S rRNA (uracil-5-)-methyltransferase RumA

Probab=98.84  E-value=3.3e-08  Score=96.46  Aligned_cols=102  Identities=16%  Similarity=0.158  Sum_probs=77.2

Q ss_pred             CCCCCCEEEEeccCCChhhHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEccccchhhc----CCC
Q 042119          127 GVVQPKKVAFVGSGPMPLTSIIMAKHHLTSTHFDNFDIDEAANDVARSIVASDAEFEGRMKFLTRDIMEVKEQ----LGE  202 (286)
Q Consensus       127 ~~~~~~~VL~IG~G~lp~tai~lA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~g~l~~~i~f~~~D~~~~~~~----l~~  202 (286)
                      ...++.+|||+|||+ |..++.+|+   ...+|+++|+|+++++.|+++++..| + ++++|+++|+.+....    -..
T Consensus       289 ~~~~~~~vLDl~cG~-G~~sl~la~---~~~~V~~vE~~~~av~~a~~n~~~~~-~-~nv~~~~~d~~~~l~~~~~~~~~  362 (431)
T TIGR00479       289 ELQGEELVVDAYCGV-GTFTLPLAK---QAKSVVGIEVVPESVEKAQQNAELNG-I-ANVEFLAGTLETVLPKQPWAGQI  362 (431)
T ss_pred             ccCCCCEEEEcCCCc-CHHHHHHHH---hCCEEEEEEcCHHHHHHHHHHHHHhC-C-CceEEEeCCHHHHHHHHHhcCCC
Confidence            346678999999996 666778888   45799999999999999999999988 4 6899999999764332    135


Q ss_pred             cceeehhhh-ccCChhHHHHHHHHHHhhccCCcEEEEe
Q 042119          203 YDCIFLAAL-VGMSKEEKLTILGHIRKYMKDGGILLVR  239 (286)
Q Consensus       203 fD~V~~aal-vg~~~~~k~~vl~~l~~~l~pgg~lv~r  239 (286)
                      ||+|+++-- .|+    ..++++.+.+ ++|++++.+.
T Consensus       363 ~D~vi~dPPr~G~----~~~~l~~l~~-l~~~~ivyvs  395 (431)
T TIGR00479       363 PDVLLLDPPRKGC----AAEVLRTIIE-LKPERIVYVS  395 (431)
T ss_pred             CCEEEECcCCCCC----CHHHHHHHHh-cCCCEEEEEc
Confidence            999997642 122    2456776664 7888766553

This protein family was first proposed to be RNA methyltransferases by homology to the TrmA family. The member from E. coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA.

>TIGR02085 meth_trns_rumB 23S rRNA (uracil-5-)-methyltransferase RumB

Probab=98.79  E-value=8.2e-08  Score=92.37  Aligned_cols=100  Identities=12%  Similarity=0.100  Sum_probs=76.6

Q ss_pred             CCCCEEEEeccCCChhhHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEccccchhhcC-CCcceee
Q 042119          129 VQPKKVAFVGSGPMPLTSIIMAKHHLTSTHFDNFDIDEAANDVARSIVASDAEFEGRMKFLTRDIMEVKEQL-GEYDCIF  207 (286)
Q Consensus       129 ~~~~~VL~IG~G~lp~tai~lA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~g~l~~~i~f~~~D~~~~~~~l-~~fD~V~  207 (286)
                      .++.+|||+|||. |.-++.+|.   .+.+|++||+|+.|++.|+++++..| + ++++|+++|+.+..... ..||+|+
T Consensus       232 ~~~~~vLDL~cG~-G~~~l~la~---~~~~v~~vE~~~~av~~a~~N~~~~~-~-~~~~~~~~d~~~~~~~~~~~~D~vi  305 (374)
T TIGR02085       232 IPVTQMWDLFCGV-GGFGLHCAG---PDTQLTGIEIESEAIACAQQSAQMLG-L-DNLSFAALDSAKFATAQMSAPELVL  305 (374)
T ss_pred             cCCCEEEEccCCc-cHHHHHHhh---cCCeEEEEECCHHHHHHHHHHHHHcC-C-CcEEEEECCHHHHHHhcCCCCCEEE
Confidence            4568999999996 555677776   67899999999999999999999999 4 58999999997755433 4699999


Q ss_pred             hhhhc-cCChhHHHHHHHHHHhhccCCcEEEEe
Q 042119          208 LAALV-GMSKEEKLTILGHIRKYMKDGGILLVR  239 (286)
Q Consensus       208 ~aalv-g~~~~~k~~vl~~l~~~l~pgg~lv~r  239 (286)
                      ++--- |+    ..++++.+.+ ++|++++.+.
T Consensus       306 ~DPPr~G~----~~~~l~~l~~-~~p~~ivyvs  333 (374)
T TIGR02085       306 VNPPRRGI----GKELCDYLSQ-MAPKFILYSS  333 (374)
T ss_pred             ECCCCCCC----cHHHHHHHHh-cCCCeEEEEE
Confidence            87321 22    2356666654 6888776664

This family consists of RNA methyltransferases designated RumB, formerly YbjF. Members act on 23S rRNA U747 and the equivalent position in other proteobacterial species. This family is homologous to the other 23S rRNA methyltransferase RumA and to the tRNA methyltransferase TrmA.

>PLN02672 methionine S-methyltransferase

Probab=98.78  E-value=4.1e-08  Score=104.77  Aligned_cols=109  Identities=24%  Similarity=0.232  Sum_probs=81.1

Q ss_pred             CCEEEEeccCCChhhHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCC--------------CCCCeEEEEccccch
Q 042119          131 PKKVAFVGSGPMPLTSIIMAKHHLTSTHFDNFDIDEAANDVARSIVASDAE--------------FEGRMKFLTRDIMEV  196 (286)
Q Consensus       131 ~~~VL~IG~G~lp~tai~lA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~g~--------------l~~~i~f~~~D~~~~  196 (286)
                      +.+|+|+|||. |.-++.+|+ ..+.++|+++|+|++|++.|+++++..+.              +.++++|+++|..+.
T Consensus       119 ~~~VLDlG~GS-G~Iai~La~-~~~~~~v~avDis~~Al~~A~~Na~~n~l~~~~~~~~~~~~~~l~~rV~f~~sDl~~~  196 (1082)
T PLN02672        119 DKTVAELGCGN-GWISIAIAE-KWLPSKVYGLDINPRAVKVAWINLYLNALDDDGLPVYDGEGKTLLDRVEFYESDLLGY  196 (1082)
T ss_pred             CCEEEEEecch-HHHHHHHHH-HCCCCEEEEEECCHHHHHHHHHHHHHcCcccccccccccccccccccEEEEECchhhh
Confidence            56999999996 777888887 46778999999999999999999987541              235899999999765


Q ss_pred             hhcCC-Ccceeehhh-hc------cCCh------------------------------hHHHHHHHHHHhhccCCcEEEE
Q 042119          197 KEQLG-EYDCIFLAA-LV------GMSK------------------------------EEKLTILGHIRKYMKDGGILLV  238 (286)
Q Consensus       197 ~~~l~-~fD~V~~aa-lv------g~~~------------------------------~~k~~vl~~l~~~l~pgg~lv~  238 (286)
                      ..+.+ .||+|+-.- .|      .|.+                              .-..+++.+..++|+|||.+++
T Consensus       197 ~~~~~~~fDlIVSNPPYI~~~e~~~l~~eV~~~ep~~~~~~~~p~~AL~g~~~g~dGL~~yr~i~~~a~~~L~pgG~l~l  276 (1082)
T PLN02672        197 CRDNNIELDRIVGCIPQILNPNPEAMSKLVTENASEEFLYSLSNYCALQGFVEDQFGLGLIARAVEEGISVIKPMGIMIF  276 (1082)
T ss_pred             ccccCCceEEEEECCCcCCCcchhhcChhhhhccccccccccCccccccCCCCCCcHHHHHHHHHHHHHHhccCCCEEEE
Confidence            43322 599875221 00      1111                              1136788888999999999998


Q ss_pred             eec
Q 042119          239 RSA  241 (286)
Q Consensus       239 r~~  241 (286)
                      --+
T Consensus       277 EiG  279 (1082)
T PLN02672        277 NMG  279 (1082)
T ss_pred             EEC
Confidence            754

>COG2263 Predicted RNA methylase [Translation, ribosomal structure and biogenesis]

Probab=98.77  E-value=9.4e-08  Score=83.28  Aligned_cols=76  Identities=25%  Similarity=0.413  Sum_probs=59.2

Q ss_pred             hcCCCCCCEEEEeccCCChhhHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEccccchhhcCCCcc
Q 042119          125 ENGVVQPKKVAFVGSGPMPLTSIIMAKHHLTSTHFDNFDIDEAANDVARSIVASDAEFEGRMKFLTRDIMEVKEQLGEYD  204 (286)
Q Consensus       125 ~~~~~~~~~VL~IG~G~lp~tai~lA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~g~l~~~i~f~~~D~~~~~~~l~~fD  204 (286)
                      ..+.-.++.|+|+|||+ |.-++-.+-  +.-.+|+|+|+||++++.+++++.+++   .++.|.++|+.++.   ..||
T Consensus        40 ~~g~l~g~~V~DlG~GT-G~La~ga~~--lGa~~V~~vdiD~~a~ei~r~N~~~l~---g~v~f~~~dv~~~~---~~~d  110 (198)
T COG2263          40 LRGDLEGKTVLDLGAGT-GILAIGAAL--LGASRVLAVDIDPEALEIARANAEELL---GDVEFVVADVSDFR---GKFD  110 (198)
T ss_pred             HcCCcCCCEEEEcCCCc-CHHHHHHHh--cCCcEEEEEecCHHHHHHHHHHHHhhC---CceEEEEcchhhcC---Cccc
Confidence            34567889999999997 555554443  334789999999999999999999854   68999999997644   4677


Q ss_pred             eeehh
Q 042119          205 CIFLA  209 (286)
Q Consensus       205 ~V~~a  209 (286)
                      .|++.
T Consensus       111 tvimN  115 (198)
T COG2263         111 TVIMN  115 (198)
T ss_pred             eEEEC
Confidence            77654

>PF13578 Methyltransf_24: Methyltransferase domain; PDB: 3SSO_A 3SSN_C 3SSM_D

Probab=98.72  E-value=7.6e-09  Score=81.31  Aligned_cols=101  Identities=19%  Similarity=0.266  Sum_probs=49.3

Q ss_pred             EEeccCCChhhHHHHHhhcCCCc--EEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEccccchhhcC--CCcceeehhh
Q 042119          135 AFVGSGPMPLTSIIMAKHHLTST--HFDNFDIDEAANDVARSIVASDAEFEGRMKFLTRDIMEVKEQL--GEYDCIFLAA  210 (286)
Q Consensus       135 L~IG~G~lp~tai~lA~~~~~g~--~V~~iDid~~ai~~Ar~~~~~~g~l~~~i~f~~~D~~~~~~~l--~~fD~V~~aa  210 (286)
                      ++||+. .|.|++++++...++.  +++++|..+. .+.+++.+++.+ +.++++++.+|..+....+  ..||++|+++
T Consensus         1 lEiG~~-~G~st~~l~~~~~~~~~~~~~~vD~~~~-~~~~~~~~~~~~-~~~~~~~~~g~s~~~l~~~~~~~~dli~iDg   77 (106)
T PF13578_consen    1 LEIGTY-SGYSTLWLASALRDNGRGKLYSVDPFPG-DEQAQEIIKKAG-LSDRVEFIQGDSPDFLPSLPDGPIDLIFIDG   77 (106)
T ss_dssp             ---------------------------EEEESS-------------GG-G-BTEEEEES-THHHHHHHHH--EEEEEEES
T ss_pred             Cccccc-cccccccccccccccccCCEEEEECCCc-ccccchhhhhcC-CCCeEEEEEcCcHHHHHHcCCCCEEEEEECC
Confidence            589987 6889999988433443  7999999997 556677777778 7789999999998765544  4799999997


Q ss_pred             hccCChhHHHHHHHHHHhhccCCcEEEEee
Q 042119          211 LVGMSKEEKLTILGHIRKYMKDGGILLVRS  240 (286)
Q Consensus       211 lvg~~~~~k~~vl~~l~~~l~pgg~lv~r~  240 (286)
                      -.  ..+.-..-++.+.++|+|||++++.+
T Consensus        78 ~H--~~~~~~~dl~~~~~~l~~ggviv~dD  105 (106)
T PF13578_consen   78 DH--SYEAVLRDLENALPRLAPGGVIVFDD  105 (106)
T ss_dssp             -----HHHHHHHHHHHGGGEEEEEEEEEE-
T ss_pred             CC--CHHHHHHHHHHHHHHcCCCeEEEEeC
Confidence            43  34566778999999999999999875

>KOG2361 consensus Predicted methyltransferase [General function prediction only]

Probab=98.72  E-value=3.8e-08  Score=88.60  Aligned_cols=118  Identities=21%  Similarity=0.286  Sum_probs=82.5

Q ss_pred             hHHHHHHHHhcCCCCCCEEEEeccCCChhhHHHHHhhcCCC--cEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEccc
Q 042119          116 SKLEYTILSENGVVQPKKVAFVGSGPMPLTSIIMAKHHLTS--THFDNFDIDEAANDVARSIVASDAEFEGRMKFLTRDI  193 (286)
Q Consensus       116 ~~~E~~~l~~~~~~~~~~VL~IG~G~lp~tai~lA~~~~~g--~~V~~iDid~~ai~~Ar~~~~~~g~l~~~i~f~~~D~  193 (286)
                      ...|+..|....-+++.+||+||||. |-|..-+-+ ..++  ..|.++|-||.|+++-++......   +++.-.+-|+
T Consensus        57 L~~Efpel~~~~~~~~~~ilEvGCGv-GNtvfPll~-~~~n~~l~v~acDfsp~Ai~~vk~~~~~~e---~~~~afv~Dl  131 (264)
T KOG2361|consen   57 LLREFPELLPVDEKSAETILEVGCGV-GNTVFPLLK-TSPNNRLKVYACDFSPRAIELVKKSSGYDE---SRVEAFVWDL  131 (264)
T ss_pred             HHHhhHHhhCccccChhhheeeccCC-Ccccchhhh-cCCCCCeEEEEcCCChHHHHHHHhccccch---hhhcccceec
Confidence            44566666555555556999999995 777776666 3444  899999999999999998755433   5665555665


Q ss_pred             cchh--h--cCCCccee---ehhhhccCChhHHHHHHHHHHhhccCCcEEEEee
Q 042119          194 MEVK--E--QLGEYDCI---FLAALVGMSKEEKLTILGHIRKYMKDGGILLVRS  240 (286)
Q Consensus       194 ~~~~--~--~l~~fD~V---~~aalvg~~~~~k~~vl~~l~~~l~pgg~lv~r~  240 (286)
                      ..-.  .  ..+++|.+   |+-+.|  +++.-..+++++.+++||||.|++|+
T Consensus       132 t~~~~~~~~~~~svD~it~IFvLSAi--~pek~~~a~~nl~~llKPGG~llfrD  183 (264)
T KOG2361|consen  132 TSPSLKEPPEEGSVDIITLIFVLSAI--HPEKMQSVIKNLRTLLKPGGSLLFRD  183 (264)
T ss_pred             cchhccCCCCcCccceEEEEEEEecc--ChHHHHHHHHHHHHHhCCCcEEEEee
Confidence            4311  1  22468865   332333  34556789999999999999999985

>PRK11933 yebU rRNA (cytosine-C(5)-)-methyltransferase RsmF; Reviewed

Probab=98.72  E-value=1.6e-07  Score=92.83  Aligned_cols=111  Identities=16%  Similarity=0.163  Sum_probs=86.7

Q ss_pred             CCCCCCEEEEeccCCChhhHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEccccchhhcC-CCcce
Q 042119          127 GVVQPKKVAFVGSGPMPLTSIIMAKHHLTSTHFDNFDIDEAANDVARSIVASDAEFEGRMKFLTRDIMEVKEQL-GEYDC  205 (286)
Q Consensus       127 ~~~~~~~VL~IG~G~lp~tai~lA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~g~l~~~i~f~~~D~~~~~~~l-~~fD~  205 (286)
                      .+.++.+|||+++||+|=|+...+. ....+.|+++|+++.+++..+++++++|.  .++.+.+.|+..+...+ ..||.
T Consensus       110 ~~~pg~~VLD~CAAPGgKTt~la~~-l~~~g~lvA~D~~~~R~~~L~~nl~r~G~--~nv~v~~~D~~~~~~~~~~~fD~  186 (470)
T PRK11933        110 DDNAPQRVLDMAAAPGSKTTQIAAL-MNNQGAIVANEYSASRVKVLHANISRCGV--SNVALTHFDGRVFGAALPETFDA  186 (470)
T ss_pred             CCCCCCEEEEeCCCccHHHHHHHHH-cCCCCEEEEEeCCHHHHHHHHHHHHHcCC--CeEEEEeCchhhhhhhchhhcCe
Confidence            5578999999999998887655443 33457999999999999999999999994  67899999987654333 36999


Q ss_pred             eehhhh---ccC---ChhH---------------HHHHHHHHHhhccCCcEEEEee
Q 042119          206 IFLAAL---VGM---SKEE---------------KLTILGHIRKYMKDGGILLVRS  240 (286)
Q Consensus       206 V~~aal---vg~---~~~~---------------k~~vl~~l~~~l~pgg~lv~r~  240 (286)
                      |++++-   -||   +++.               -.++|.+..+.|||||+||+.+
T Consensus       187 ILvDaPCSG~G~~rk~p~~~~~~s~~~v~~l~~lQ~~iL~~A~~~LkpGG~LVYST  242 (470)
T PRK11933        187 ILLDAPCSGEGTVRKDPDALKNWSPESNLEIAATQRELIESAFHALKPGGTLVYST  242 (470)
T ss_pred             EEEcCCCCCCcccccCHHHhhhCCHHHHHHHHHHHHHHHHHHHHHcCCCcEEEEEC
Confidence            998762   233   1111               1579999999999999999964

>PF02390 Methyltransf_4: Putative methyltransferase ; InterPro: IPR003358 This entry represents tRNA (guanine-N-7) methyltransferase (2

Probab=98.72  E-value=6.1e-08  Score=85.28  Aligned_cols=104  Identities=20%  Similarity=0.226  Sum_probs=79.9

Q ss_pred             EEEEeccCCChhhHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEccccchhh---cCCCcceeehh
Q 042119          133 KVAFVGSGPMPLTSIIMAKHHLTSTHFDNFDIDEAANDVARSIVASDAEFEGRMKFLTRDIMEVKE---QLGEYDCIFLA  209 (286)
Q Consensus       133 ~VL~IG~G~lp~tai~lA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~g~l~~~i~f~~~D~~~~~~---~l~~fD~V~~a  209 (286)
                      -+++|||| .|--.+.+|+ ..|+..++|||+....++.|.+.+.+.|+  .++.++++|+..+..   +.+.+|-|++.
T Consensus        20 l~lEIG~G-~G~~l~~~A~-~~Pd~n~iGiE~~~~~v~~a~~~~~~~~l--~Nv~~~~~da~~~l~~~~~~~~v~~i~i~   95 (195)
T PF02390_consen   20 LILEIGCG-KGEFLIELAK-RNPDINFIGIEIRKKRVAKALRKAEKRGL--KNVRFLRGDARELLRRLFPPGSVDRIYIN   95 (195)
T ss_dssp             EEEEET-T-TSHHHHHHHH-HSTTSEEEEEES-HHHHHHHHHHHHHHTT--SSEEEEES-CTTHHHHHSTTTSEEEEEEE
T ss_pred             eEEEecCC-CCHHHHHHHH-HCCCCCEEEEecchHHHHHHHHHHHhhcc--cceEEEEccHHHHHhhcccCCchheEEEe
Confidence            89999999 5777788888 58999999999999999999999999995  799999999988543   22468888765


Q ss_pred             hhccCChhH-------HHHHHHHHHhhccCCcEEEEee
Q 042119          210 ALVGMSKEE-------KLTILGHIRKYMKDGGILLVRS  240 (286)
Q Consensus       210 alvg~~~~~-------k~~vl~~l~~~l~pgg~lv~r~  240 (286)
                      .--.|++..       -.++++.+++.|+|||.|-+++
T Consensus        96 FPDPWpK~rH~krRl~~~~fl~~~~~~L~~gG~l~~~T  133 (195)
T PF02390_consen   96 FPDPWPKKRHHKRRLVNPEFLELLARVLKPGGELYFAT  133 (195)
T ss_dssp             S-----SGGGGGGSTTSHHHHHHHHHHEEEEEEEEEEE
T ss_pred             CCCCCcccchhhhhcCCchHHHHHHHHcCCCCEEEEEe
Confidence            422332211       2468999999999999999987

1.1.33 from EC), which catalyses the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA. Capping of the pre-mRNA 5' end by addition a monomethylated guanosine cap (m(7)G) is an essential and the earliest modification in the biogenesis of mRNA []. The reaction is catalysed by three enzymes: triphosphatase, guanylyltransferase, and tRNA (guanine-N-7) methyltransferase [, ].; GO: 0008176 tRNA (guanine-N7-)-methyltransferase activity, 0006400 tRNA modification; PDB: 3DXZ_A 3DXY_A 3DXX_A 3CKK_A 3P2I_B 3P2K_D 3P2E_A 3MTE_B 3PB3_B 1YZH_B ....

>TIGR00095 RNA methyltransferase, RsmD family

Probab=98.72  E-value=1.6e-07  Score=82.09  Aligned_cols=107  Identities=13%  Similarity=0.025  Sum_probs=78.9

Q ss_pred             CCCCEEEEeccCCChhhHHHHHhhcCCCc-EEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEccccchhhcC---C-Cc
Q 042119          129 VQPKKVAFVGSGPMPLTSIIMAKHHLTST-HFDNFDIDEAANDVARSIVASDAEFEGRMKFLTRDIMEVKEQL---G-EY  203 (286)
Q Consensus       129 ~~~~~VL~IG~G~lp~tai~lA~~~~~g~-~V~~iDid~~ai~~Ar~~~~~~g~l~~~i~f~~~D~~~~~~~l---~-~f  203 (286)
                      ..+.+|||++||++.++ +.+++   .|+ +|++||+|+.+++.++++++..+ +.++++++++|+.+....+   . .|
T Consensus        48 ~~g~~vLDLfaGsG~lg-lea~s---rga~~v~~vE~~~~a~~~~~~N~~~~~-~~~~~~~~~~D~~~~l~~~~~~~~~~  122 (189)
T TIGR00095        48 IQGAHLLDVFAGSGLLG-EEALS---RGAKVAFLEEDDRKANQTLKENLALLK-SGEQAEVVRNSALRALKFLAKKPTFD  122 (189)
T ss_pred             cCCCEEEEecCCCcHHH-HHHHh---CCCCEEEEEeCCHHHHHHHHHHHHHhC-CcccEEEEehhHHHHHHHhhccCCCc
Confidence            35789999999976555 44444   344 89999999999999999999999 6778999999996654322   2 38


Q ss_pred             ceeehhhhccCChhHHHHHHHHHHh--hccCCcEEEEeecC
Q 042119          204 DCIFLAALVGMSKEEKLTILGHIRK--YMKDGGILLVRSAK  242 (286)
Q Consensus       204 D~V~~aalvg~~~~~k~~vl~~l~~--~l~pgg~lv~r~~~  242 (286)
                      |+||++---+.  ....++++.+..  .+++||++++....
T Consensus       123 dvv~~DPPy~~--~~~~~~l~~l~~~~~l~~~~iiv~E~~~  161 (189)
T TIGR00095       123 NVIYLDPPFFN--GALQALLELCENNWILEDTVLIVVEEDR  161 (189)
T ss_pred             eEEEECcCCCC--CcHHHHHHHHHHCCCCCCCeEEEEEecC
Confidence            99988743321  233455665544  68999999998654

This model represents a family of uncharacterized bacterial proteins. Members are present in nearly every complete bacterial genome, always in a single copy. PSI-BLAST analysis shows homology to several families of SAM-dependent methyltransferases, including ribosomal RNA adenine dimethylases.

>PF02527 GidB: rRNA small subunit methyltransferase G; InterPro: IPR003682 This entry represents a rRNA small subunit methyltransferase G

Probab=98.71  E-value=8.8e-08  Score=83.66  Aligned_cols=100  Identities=20%  Similarity=0.216  Sum_probs=82.4

Q ss_pred             CEEEEeccCCChhhHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEccccchhhcCCCcceeehhhh
Q 042119          132 KKVAFVGSGPMPLTSIIMAKHHLTSTHFDNFDIDEAANDVARSIVASDAEFEGRMKFLTRDIMEVKEQLGEYDCIFLAAL  211 (286)
Q Consensus       132 ~~VL~IG~G~lp~tai~lA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~g~l~~~i~f~~~D~~~~~~~l~~fD~V~~aal  211 (286)
                      .+++||||| .|+..+.+|= .+|..+|+-+|.....++.-+..++.+| + ++++++++.+.+ ...-..||+|+.-|+
T Consensus        50 ~~~lDiGSG-aGfPGipLaI-~~p~~~~~LvEs~~KK~~FL~~~~~~L~-L-~nv~v~~~R~E~-~~~~~~fd~v~aRAv  124 (184)
T PF02527_consen   50 KKVLDIGSG-AGFPGIPLAI-ARPDLQVTLVESVGKKVAFLKEVVRELG-L-SNVEVINGRAEE-PEYRESFDVVTARAV  124 (184)
T ss_dssp             SEEEEETST-TTTTHHHHHH-H-TTSEEEEEESSHHHHHHHHHHHHHHT---SSEEEEES-HHH-TTTTT-EEEEEEESS
T ss_pred             ceEEecCCC-CCChhHHHHH-hCCCCcEEEEeCCchHHHHHHHHHHHhC-C-CCEEEEEeeecc-cccCCCccEEEeehh
Confidence            389999999 5999999998 6899999999999999999999999999 4 589999999987 333357999997665


Q ss_pred             ccCChhHHHHHHHHHHhhccCCcEEEEeec
Q 042119          212 VGMSKEEKLTILGHIRKYMKDGGILLVRSA  241 (286)
Q Consensus       212 vg~~~~~k~~vl~~l~~~l~pgg~lv~r~~  241 (286)
                      .     +-..+++-..+.+++||.+++--+
T Consensus       125 ~-----~l~~l~~~~~~~l~~~G~~l~~KG  149 (184)
T PF02527_consen  125 A-----PLDKLLELARPLLKPGGRLLAYKG  149 (184)
T ss_dssp             S-----SHHHHHHHHGGGEEEEEEEEEEES
T ss_pred             c-----CHHHHHHHHHHhcCCCCEEEEEcC
Confidence            3     445788999999999998887643

Previously identified as a glucose-inhibited division protein B that appears to be present and in a single copy in all complete eubacterial genomes so far sequenced. Specifically methylates the N7 position of a guanosine in 16S rRNA [, , ].; GO: 0008649 rRNA methyltransferase activity, 0006364 rRNA processing, 0005737 cytoplasm; PDB: 1XDZ_A 3G88_A 3G8A_B 3G89_B 3G8B_B 1JSX_A.

>PF09445 Methyltransf_15: RNA cap guanine-N2 methyltransferase; InterPro: IPR019012 RNA cap guanine-N2 methyltransferases such as Schizosaccharomyces pombe (Fission yeast) trimethylguanosine synthase (Tgs1) and Giardia lamblia (Giardia intestinalis) Tgs2, catalyse the methylation step(s) for the conversion of the 7-monomethylguanosine (m(7)G) caps of snRNAs and snoRNAs to a 2,2,7-trimethylguanosine (m(2,2,7)G) cap structure [, , ]

Probab=98.70  E-value=4.1e-08  Score=84.07  Aligned_cols=74  Identities=22%  Similarity=0.311  Sum_probs=57.6

Q ss_pred             CEEEEeccCCChhhHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEccccchhhcCC--C-cceeeh
Q 042119          132 KKVAFVGSGPMPLTSIIMAKHHLTSTHFDNFDIDEAANDVARSIVASDAEFEGRMKFLTRDIMEVKEQLG--E-YDCIFL  208 (286)
Q Consensus       132 ~~VL~IG~G~lp~tai~lA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~g~l~~~i~f~~~D~~~~~~~l~--~-fD~V~~  208 (286)
                      +.|+|+-|| .|-.++.+|+   ...+|++||+||..++.|+.+++..| ++++|+|+++|..++...+.  . ||+||+
T Consensus         1 ~~vlD~fcG-~GGNtIqFA~---~~~~Viaidid~~~~~~a~hNa~vYG-v~~~I~~i~gD~~~~~~~~~~~~~~D~vFl   75 (163)
T PF09445_consen    1 TTVLDAFCG-VGGNTIQFAR---TFDRVIAIDIDPERLECAKHNAEVYG-VADNIDFICGDFFELLKRLKSNKIFDVVFL   75 (163)
T ss_dssp             SEEEETT-T-TSHHHHHHHH---TT-EEEEEES-HHHHHHHHHHHHHTT--GGGEEEEES-HHHHGGGB------SEEEE
T ss_pred             CEEEEeccC-cCHHHHHHHH---hCCeEEEEECCHHHHHHHHHHHHHcC-CCCcEEEEeCCHHHHHhhccccccccEEEE
Confidence            368999999 5778899999   57899999999999999999999999 78999999999998766543  2 899997


Q ss_pred             hh
Q 042119          209 AA  210 (286)
Q Consensus       209 aa  210 (286)
                      +-
T Consensus        76 SP   77 (163)
T PF09445_consen   76 SP   77 (163)
T ss_dssp             --
T ss_pred             CC
Confidence            65

Trimethylguanosine synthase is specific for guanine, and N7 methylation must precede N2 methylation. This enzyme is required for pre-mRNA splicing, pre-rRNA processing and small ribosomal subunit synthesis. As such, this enzyme plays a role in transcriptional regulation. ; GO: 0008168 methyltransferase activity, 0001510 RNA methylation, 0009452 RNA capping; PDB: 3EGI_B 3GDH_A.

>TIGR02081 metW methionine biosynthesis protein MetW

Probab=98.68  E-value=1.2e-07  Score=82.72  Aligned_cols=91  Identities=12%  Similarity=0.156  Sum_probs=66.3

Q ss_pred             CCCCEEEEeccCCChhhHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEccccc-hh-hcCCCccee
Q 042119          129 VQPKKVAFVGSGPMPLTSIIMAKHHLTSTHFDNFDIDEAANDVARSIVASDAEFEGRMKFLTRDIME-VK-EQLGEYDCI  206 (286)
Q Consensus       129 ~~~~~VL~IG~G~lp~tai~lA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~g~l~~~i~f~~~D~~~-~~-~~l~~fD~V  206 (286)
                      +++++|||||||++. .+..+++.  .+..++|+|+++++++.|++    .     +++++++|+.+ ++ ...+.||+|
T Consensus        12 ~~~~~iLDiGcG~G~-~~~~l~~~--~~~~~~giD~s~~~i~~a~~----~-----~~~~~~~d~~~~l~~~~~~sfD~V   79 (194)
T TIGR02081        12 PPGSRVLDLGCGDGE-LLALLRDE--KQVRGYGIEIDQDGVLACVA----R-----GVNVIQGDLDEGLEAFPDKSFDYV   79 (194)
T ss_pred             CCCCEEEEeCCCCCH-HHHHHHhc--cCCcEEEEeCCHHHHHHHHH----c-----CCeEEEEEhhhcccccCCCCcCEE
Confidence            567899999999754 45667652  57889999999999998864    2     36889999865 22 233579999


Q ss_pred             ehhhhccCChhHHHHHHHHHHhhccC
Q 042119          207 FLAALVGMSKEEKLTILGHIRKYMKD  232 (286)
Q Consensus       207 ~~aalvg~~~~~k~~vl~~l~~~l~p  232 (286)
                      +....+. +..+..++++++.+.+++
T Consensus        80 i~~~~l~-~~~d~~~~l~e~~r~~~~  104 (194)
T TIGR02081        80 ILSQTLQ-ATRNPEEILDEMLRVGRH  104 (194)
T ss_pred             EEhhHhH-cCcCHHHHHHHHHHhCCe
Confidence            9765442 235677889998877654

This protein is found alongside MetX, of the enzyme that acylates homoserine as a first step toward methionine biosynthesis, in many species. It appears to act in methionine biosynthesis but is not fully characterized.

>PRK00536 speE spermidine synthase; Provisional

Probab=98.68  E-value=1.8e-07  Score=85.86  Aligned_cols=99  Identities=16%  Similarity=0.187  Sum_probs=75.8

Q ss_pred             CCCCEEEEeccCCChhhHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhc--CCCCCCeEEEEccccchhhc-CCCcce
Q 042119          129 VQPKKVAFVGSGPMPLTSIIMAKHHLTSTHFDNFDIDEAANDVARSIVASD--AEFEGRMKFLTRDIMEVKEQ-LGEYDC  205 (286)
Q Consensus       129 ~~~~~VL~IG~G~lp~tai~lA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~--g~l~~~i~f~~~D~~~~~~~-l~~fD~  205 (286)
                      ..|+|||.||+|- |.++.-+.|+  + .+|+-+|||++.++.|++.+-..  +.-..|++++.. .   ... -+.||+
T Consensus        71 ~~pk~VLIiGGGD-Gg~~REvLkh--~-~~v~mVeID~~Vv~~~k~~lP~~~~~~~DpRv~l~~~-~---~~~~~~~fDV  142 (262)
T PRK00536         71 KELKEVLIVDGFD-LELAHQLFKY--D-THVDFVQADEKILDSFISFFPHFHEVKNNKNFTHAKQ-L---LDLDIKKYDL  142 (262)
T ss_pred             CCCCeEEEEcCCc-hHHHHHHHCc--C-CeeEEEECCHHHHHHHHHHCHHHHHhhcCCCEEEeeh-h---hhccCCcCCE
Confidence            6789999999996 6677888872  4 49999999999999999953321  212468888862 2   222 257999


Q ss_pred             eehhhhccCChhHHHHHHHHHHhhccCCcEEEEeec
Q 042119          206 IFLAALVGMSKEEKLTILGHIRKYMKDGGILLVRSA  241 (286)
Q Consensus       206 V~~aalvg~~~~~k~~vl~~l~~~l~pgg~lv~r~~  241 (286)
                      |+++++-     + .++++.+.+.|+|||++++.+.
T Consensus       143 IIvDs~~-----~-~~fy~~~~~~L~~~Gi~v~Qs~  172 (262)
T PRK00536        143 IICLQEP-----D-IHKIDGLKRMLKEDGVFISVAK  172 (262)
T ss_pred             EEEcCCC-----C-hHHHHHHHHhcCCCcEEEECCC
Confidence            9999763     2 3688999999999999999864

>PRK11727 23S rRNA mA1618 methyltransferase; Provisional

Probab=98.64  E-value=1.3e-07  Score=89.34  Aligned_cols=122  Identities=16%  Similarity=0.134  Sum_probs=77.7

Q ss_pred             HhhhHHHHHHhcCCCCcccccccC-cCccchhhhhHHHHHHHH--hcCCCCCCEEEEeccCCChhhHHHHHhhcCCCcEE
Q 042119           83 GLLELEFATFLTKIPQPLNNLSLF-PYYGNYVKLSKLEYTILS--ENGVVQPKKVAFVGSGPMPLTSIIMAKHHLTSTHF  159 (286)
Q Consensus        83 ~~lE~~~A~~l~~~~~p~~~L~~f-py~~ny~~l~~~E~~~l~--~~~~~~~~~VL~IG~G~lp~tai~lA~~~~~g~~V  159 (286)
                      ++|..+|.-..-  +.|-..|-+- |---||..-+...+....  ......+.++||||||++++..++.++  .++++|
T Consensus        66 alL~~~ygl~~w--dip~~~LcPpiP~R~~Yi~~l~dll~~~~~~~~p~~~~~~vLDIGtGag~I~~lLa~~--~~~~~~  141 (321)
T PRK11727         66 ALLAHFYGVAHW--DIPAGYLCPPIPGRADYIHHLADLLAEDNGGVIPRGANVRVLDIGVGANCIYPLIGVH--EYGWRF  141 (321)
T ss_pred             HHHHHhcCCCcc--cCCCCCcCCCCCcHHHHHHHHHHHhcccccccCCCCCCceEEEecCCccHHHHHHHhh--CCCCEE
Confidence            344445443322  3444444432 544566654433222110  011135689999999987676665555  579999


Q ss_pred             EEEeCChHHHHHHHHHHHhc-CCCCCCeEEEE-ccccchhhc----CCCcceeehh
Q 042119          160 DNFDIDEAANDVARSIVASD-AEFEGRMKFLT-RDIMEVKEQ----LGEYDCIFLA  209 (286)
Q Consensus       160 ~~iDid~~ai~~Ar~~~~~~-g~l~~~i~f~~-~D~~~~~~~----l~~fD~V~~a  209 (286)
                      +|+|+|+.+++.|+++++.. + +.++|++.. .|..++...    .+.||+|+..
T Consensus       142 ~atDId~~Al~~A~~Nv~~Np~-l~~~I~~~~~~~~~~i~~~i~~~~~~fDlivcN  196 (321)
T PRK11727        142 VGSDIDPQALASAQAIISANPG-LNGAIRLRLQKDSKAIFKGIIHKNERFDATLCN  196 (321)
T ss_pred             EEEeCCHHHHHHHHHHHHhccC-CcCcEEEEEccchhhhhhcccccCCceEEEEeC
Confidence            99999999999999999998 7 788999964 444443332    2469999743

>PF06080 DUF938: Protein of unknown function (DUF938); InterPro: IPR010342 This family consists of several hypothetical proteins from both prokaryotes and eukaryotes

Probab=98.63  E-value=4e-07  Score=80.56  Aligned_cols=120  Identities=16%  Similarity=0.183  Sum_probs=90.3

Q ss_pred             HHHHHHHhcCCCCCCEEEEeccCCChhhHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEccccchh
Q 042119          118 LEYTILSENGVVQPKKVAFVGSGPMPLTSIIMAKHHLTSTHFDNFDIDEAANDVARSIVASDAEFEGRMKFLTRDIMEVK  197 (286)
Q Consensus       118 ~E~~~l~~~~~~~~~~VL~IG~G~lp~tai~lA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~g~l~~~i~f~~~D~~~~~  197 (286)
                      ...+.|.++....+.+||+||||+ |.=+..+|+ ++|..+..--|.++....--+..++..| +..--.-+.-|+.+-.
T Consensus        13 pIl~vL~~~l~~~~~~vLEiaSGt-GqHa~~FA~-~lP~l~WqPSD~~~~~~~sI~a~~~~~~-~~Nv~~P~~lDv~~~~   89 (204)
T PF06080_consen   13 PILEVLKQYLPDSGTRVLEIASGT-GQHAVYFAQ-ALPHLTWQPSDPDDNLRPSIRAWIAEAG-LPNVRPPLALDVSAPP   89 (204)
T ss_pred             HHHHHHHHHhCccCceEEEEcCCc-cHHHHHHHH-HCCCCEEcCCCCChHHHhhHHHHHHhcC-CcccCCCeEeecCCCC
Confidence            344555555544555799999996 889999999 6999999999999999877777777777 4333334455665543


Q ss_pred             hcCC--------Ccceeehhhhc-cCChhHHHHHHHHHHhhccCCcEEEEee
Q 042119          198 EQLG--------EYDCIFLAALV-GMSKEEKLTILGHIRKYMKDGGILLVRS  240 (286)
Q Consensus       198 ~~l~--------~fD~V~~aalv-g~~~~~k~~vl~~l~~~l~pgg~lv~r~  240 (286)
                      .++.        .||.||.+.++ -|+-+.-..+++...+.|+|||.|++-.
T Consensus        90 w~~~~~~~~~~~~~D~i~~~N~lHI~p~~~~~~lf~~a~~~L~~gG~L~~YG  141 (204)
T PF06080_consen   90 WPWELPAPLSPESFDAIFCINMLHISPWSAVEGLFAGAARLLKPGGLLFLYG  141 (204)
T ss_pred             CccccccccCCCCcceeeehhHHHhcCHHHHHHHHHHHHHhCCCCCEEEEeC
Confidence            4333        79999988765 4566777889999999999999999843

The function of this family is unknown.

>PF02475 Met_10: Met-10+ like-protein; InterPro: IPR003402 This entry represents the Trm5 family

Probab=98.60  E-value=3.1e-07  Score=81.27  Aligned_cols=111  Identities=21%  Similarity=0.252  Sum_probs=77.8

Q ss_pred             HHHHHHHHhcCCCCCCEEEEeccCCChhhHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEccccch
Q 042119          117 KLEYTILSENGVVQPKKVAFVGSGPMPLTSIIMAKHHLTSTHFDNFDIDEAANDVARSIVASDAEFEGRMKFLTRDIMEV  196 (286)
Q Consensus       117 ~~E~~~l~~~~~~~~~~VL~IG~G~lp~tai~lA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~g~l~~~i~f~~~D~~~~  196 (286)
                      ..|..-+.+. ..++..|+|.-||-+ .-++.+|+ +..+..|+++|++|.+++..++.++..+ +.++|..+.+|+.++
T Consensus        89 ~~Er~Ri~~~-v~~~e~VlD~faGIG-~f~l~~ak-~~~~~~V~A~d~Np~a~~~L~~Ni~lNk-v~~~i~~~~~D~~~~  164 (200)
T PF02475_consen   89 STERRRIANL-VKPGEVVLDMFAGIG-PFSLPIAK-HGKAKRVYAVDLNPDAVEYLKENIRLNK-VENRIEVINGDAREF  164 (200)
T ss_dssp             HHHHHHHHTC---TT-EEEETT-TTT-TTHHHHHH-HT-SSEEEEEES-HHHHHHHHHHHHHTT--TTTEEEEES-GGG-
T ss_pred             HHHHHHHHhc-CCcceEEEEccCCcc-HHHHHHhh-hcCccEEEEecCCHHHHHHHHHHHHHcC-CCCeEEEEcCCHHHh
Confidence            3455555443 588999999999954 45577787 4678899999999999999999999999 789999999999988


Q ss_pred             hhcCCCcceeehhhhccCChhHHHHHHHHHHhhccCCcEEE
Q 042119          197 KEQLGEYDCIFLAALVGMSKEEKLTILGHIRKYMKDGGILL  237 (286)
Q Consensus       197 ~~~l~~fD~V~~aalvg~~~~~k~~vl~~l~~~l~pgg~lv  237 (286)
                      .. ...||.|++.-.     +.-.+++....+.+++||++-
T Consensus       165 ~~-~~~~drvim~lp-----~~~~~fl~~~~~~~~~~g~ih  199 (200)
T PF02475_consen  165 LP-EGKFDRVIMNLP-----ESSLEFLDAALSLLKEGGIIH  199 (200)
T ss_dssp             ---TT-EEEEEE--T-----SSGGGGHHHHHHHEEEEEEEE
T ss_pred             cC-ccccCEEEECCh-----HHHHHHHHHHHHHhcCCcEEE
Confidence            76 457999887532     122368999999999999874

Trm5 specifically methylates the N1 position of guanosine-37 in various tRNAs [, , ]. Another members of this family, tRNA wybutosine-synthesizing protein 2 (Tyw2) and its homologues, are S-adenosyl-L-methionine-dependent transferases that act as a component of the wybutosine biosynthesis pathway [, ]. tRNA wybutosine-synthesizing protein 2 was originally thought to be a methyltransferase [].; GO: 0016740 transferase activity; PDB: 3A27_A 2ZZN_B 2YX1_A 2ZZM_A 3AY0_B 3K6R_A 3A26_A 3A25_A.

>COG1092 Predicted SAM-dependent methyltransferases [General function prediction only]

Probab=98.59  E-value=3.7e-07  Score=88.22  Aligned_cols=109  Identities=17%  Similarity=0.202  Sum_probs=86.8

Q ss_pred             CCCEEEEeccCCChhhHHHHHhhcCCCc-EEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEccccchhhcC----CCcc
Q 042119          130 QPKKVAFVGSGPMPLTSIIMAKHHLTST-HFDNFDIDEAANDVARSIVASDAEFEGRMKFLTRDIMEVKEQL----GEYD  204 (286)
Q Consensus       130 ~~~~VL~IG~G~lp~tai~lA~~~~~g~-~V~~iDid~~ai~~Ar~~~~~~g~l~~~i~f~~~D~~~~~~~l----~~fD  204 (286)
                      .|++||++=|=++|+| +..|.   -|| +||+||+|..++++|+++++-.|.-.+++.|+++|+.+.....    ..||
T Consensus       217 ~GkrvLNlFsYTGgfS-v~Aa~---gGA~~vt~VD~S~~al~~a~~N~~LNg~~~~~~~~i~~Dvf~~l~~~~~~g~~fD  292 (393)
T COG1092         217 AGKRVLNLFSYTGGFS-VHAAL---GGASEVTSVDLSKRALEWARENAELNGLDGDRHRFIVGDVFKWLRKAERRGEKFD  292 (393)
T ss_pred             cCCeEEEecccCcHHH-HHHHh---cCCCceEEEeccHHHHHHHHHHHHhcCCCccceeeehhhHHHHHHHHHhcCCccc
Confidence            4999999999876655 55554   788 9999999999999999999999943578999999998876543    2699


Q ss_pred             eeehhh--hc-c--CC---hhHHHHHHHHHHhhccCCcEEEEeecC
Q 042119          205 CIFLAA--LV-G--MS---KEEKLTILGHIRKYMKDGGILLVRSAK  242 (286)
Q Consensus       205 ~V~~aa--lv-g--~~---~~~k~~vl~~l~~~l~pgg~lv~r~~~  242 (286)
                      +|+++-  +. +  +.   ..+..+++....+.|+|||++++-+-+
T Consensus       293 lIilDPPsF~r~k~~~~~~~rdy~~l~~~~~~iL~pgG~l~~~s~~  338 (393)
T COG1092         293 LIILDPPSFARSKKQEFSAQRDYKDLNDLALRLLAPGGTLVTSSCS  338 (393)
T ss_pred             EEEECCcccccCcccchhHHHHHHHHHHHHHHHcCCCCEEEEEecC
Confidence            999873  22 1  11   245678899999999999999998743

>COG0220 Predicted S-adenosylmethionine-dependent methyltransferase [General function prediction only]

Probab=98.57  E-value=4.2e-07  Score=81.87  Aligned_cols=106  Identities=23%  Similarity=0.251  Sum_probs=88.4

Q ss_pred             CEEEEeccCCChhhHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEccccchhhcC---CCcceeeh
Q 042119          132 KKVAFVGSGPMPLTSIIMAKHHLTSTHFDNFDIDEAANDVARSIVASDAEFEGRMKFLTRDIMEVKEQL---GEYDCIFL  208 (286)
Q Consensus       132 ~~VL~IG~G~lp~tai~lA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~g~l~~~i~f~~~D~~~~~~~l---~~fD~V~~  208 (286)
                      .-+++|||| .|-..+.+|+ ..|...++|||+....+..|.+.+.+.|+  ++++++++|+.++...+   ++.|-|++
T Consensus        50 pi~lEIGfG-~G~~l~~~A~-~nP~~nfiGiEi~~~~v~~~l~k~~~~~l--~Nlri~~~DA~~~l~~~~~~~sl~~I~i  125 (227)
T COG0220          50 PIVLEIGFG-MGEFLVEMAK-KNPEKNFLGIEIRVPGVAKALKKIKELGL--KNLRLLCGDAVEVLDYLIPDGSLDKIYI  125 (227)
T ss_pred             cEEEEECCC-CCHHHHHHHH-HCCCCCEEEEEEehHHHHHHHHHHHHcCC--CcEEEEcCCHHHHHHhcCCCCCeeEEEE
Confidence            589999999 6888889998 58999999999999999999999999993  49999999999887644   36788877


Q ss_pred             hhhccCChhH-------HHHHHHHHHhhccCCcEEEEeec
Q 042119          209 AALVGMSKEE-------KLTILGHIRKYMKDGGILLVRSA  241 (286)
Q Consensus       209 aalvg~~~~~-------k~~vl~~l~~~l~pgg~lv~r~~  241 (286)
                      ..--.|++..       ...+++.+++.|+|||.|-+.+-
T Consensus       126 ~FPDPWpKkRH~KRRl~~~~fl~~~a~~Lk~gG~l~~aTD  165 (227)
T COG0220         126 NFPDPWPKKRHHKRRLTQPEFLKLYARKLKPGGVLHFATD  165 (227)
T ss_pred             ECCCCCCCccccccccCCHHHHHHHHHHccCCCEEEEEec
Confidence            6443554432       24689999999999999999873

>PTZ00338 dimethyladenosine transferase-like protein; Provisional

Probab=98.56  E-value=4.7e-07  Score=84.51  Aligned_cols=78  Identities=12%  Similarity=0.218  Sum_probs=62.6

Q ss_pred             hcCCCCCCEEEEeccCCChhhHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEccccchhhcCCCcc
Q 042119          125 ENGVVQPKKVAFVGSGPMPLTSIIMAKHHLTSTHFDNFDIDEAANDVARSIVASDAEFEGRMKFLTRDIMEVKEQLGEYD  204 (286)
Q Consensus       125 ~~~~~~~~~VL~IG~G~lp~tai~lA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~g~l~~~i~f~~~D~~~~~~~l~~fD  204 (286)
                      ...+.++.+|++||||++.+|. .+++   .+.+|+++|+|+.+++.+++.+...| ..++++++++|+.+.  ++..||
T Consensus        31 ~~~~~~~~~VLEIG~G~G~LT~-~Ll~---~~~~V~avEiD~~li~~l~~~~~~~~-~~~~v~ii~~Dal~~--~~~~~d  103 (294)
T PTZ00338         31 KAAIKPTDTVLEIGPGTGNLTE-KLLQ---LAKKVIAIEIDPRMVAELKKRFQNSP-LASKLEVIEGDALKT--EFPYFD  103 (294)
T ss_pred             hcCCCCcCEEEEecCchHHHHH-HHHH---hCCcEEEEECCHHHHHHHHHHHHhcC-CCCcEEEEECCHhhh--cccccC
Confidence            3456788999999999866664 4555   46789999999999999999998877 457899999999764  345799


Q ss_pred             eeehh
Q 042119          205 CIFLA  209 (286)
Q Consensus       205 ~V~~a  209 (286)
                      .|+..
T Consensus       104 ~VvaN  108 (294)
T PTZ00338        104 VCVAN  108 (294)
T ss_pred             EEEec
Confidence            87743

>KOG1269 consensus SAM-dependent methyltransferases [Lipid transport and metabolism; General function prediction only]

Probab=98.55  E-value=1.4e-07  Score=90.30  Aligned_cols=162  Identities=14%  Similarity=0.168  Sum_probs=127.9

Q ss_pred             HHHHHHHHHHHHHHHhHhhhHHHHHHhcCCCCcccccccCcCccchhhhhHHHHHHHHhcCCCCCCEEEEeccCCChhhH
Q 042119           67 VQKMRESLIVLCGRAEGLLELEFATFLTKIPQPLNNLSLFPYYGNYVKLSKLEYTILSENGVVQPKKVAFVGSGPMPLTS  146 (286)
Q Consensus        67 ~~~l~~~l~~l~~~~e~~lE~~~A~~l~~~~~p~~~L~~fpy~~ny~~l~~~E~~~l~~~~~~~~~~VL~IG~G~lp~ta  146 (286)
                      ...+.+.+-++++..+...|..|...++.++-|       ..-.+....++.|--...+.+..++.+++++||| +|-.+
T Consensus        54 ~~~~~e~~~~~y~~~~dl~~~~w~~~~h~~~~~-------e~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~g-~~~~~  125 (364)
T KOG1269|consen   54 TEDLPEQIAKYYNNSTDLYERNWGQSFHFGRIP-------EGNSNEMFWIRHEGIVALRESCFPGSKVLDVGTG-VGGPS  125 (364)
T ss_pred             ccccchHHHHHhcccchhhhhhhccchhccCcc-------chhHHHHHHHhhcchHHHhhcCcccccccccCcC-cCchh
Confidence            335567788888888999999999999876553       2323444444444444445566888899999999 67777


Q ss_pred             HHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEccccchhhcCCCcceeehhhhccCChhHHHHHHHHH
Q 042119          147 IIMAKHHLTSTHFDNFDIDEAANDVARSIVASDAEFEGRMKFLTRDIMEVKEQLGEYDCIFLAALVGMSKEEKLTILGHI  226 (286)
Q Consensus       147 i~lA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~g~l~~~i~f~~~D~~~~~~~l~~fD~V~~aalvg~~~~~k~~vl~~l  226 (286)
                      ..++.  +.+++++|+|.++..+..+.......+ +.++-.|+.+|..+.+++...||.|.+.-. +.+.+....+++++
T Consensus       126 ~~i~~--f~~~~~~Gl~~n~~e~~~~~~~~~~~~-l~~k~~~~~~~~~~~~fedn~fd~v~~ld~-~~~~~~~~~~y~Ei  201 (364)
T KOG1269|consen  126 RYIAV--FKKAGVVGLDNNAYEAFRANELAKKAY-LDNKCNFVVADFGKMPFEDNTFDGVRFLEV-VCHAPDLEKVYAEI  201 (364)
T ss_pred             HHHHH--hccCCccCCCcCHHHHHHHHHHHHHHH-hhhhcceehhhhhcCCCCccccCcEEEEee-cccCCcHHHHHHHH
Confidence            88887  688999999999999999999999888 788889999999998888889999974322 33457888899999


Q ss_pred             HhhccCCcEEEEee
Q 042119          227 RKYMKDGGILLVRS  240 (286)
Q Consensus       227 ~~~l~pgg~lv~r~  240 (286)
                      .++++|||+.++-.
T Consensus       202 ~rv~kpGG~~i~~e  215 (364)
T KOG1269|consen  202 YRVLKPGGLFIVKE  215 (364)
T ss_pred             hcccCCCceEEeHH
Confidence            99999999999853

>PF05185 PRMT5: PRMT5 arginine-N-methyltransferase; InterPro: IPR007857 The human homologue of Saccharomyces cerevisiae Skb1 (Shk1 kinase-binding protein 1) is a protein methyltransferase []

Probab=98.53  E-value=5.8e-07  Score=88.50  Aligned_cols=127  Identities=18%  Similarity=0.239  Sum_probs=85.4

Q ss_pred             cCccchhhhhHHHHHHHHhcCCC----CCCEEEEeccCCChhhHHHHHh--hcCCCcEEEEEeCChHHHHHHHHHHHhcC
Q 042119          107 PYYGNYVKLSKLEYTILSENGVV----QPKKVAFVGSGPMPLTSIIMAK--HHLTSTHFDNFDIDEAANDVARSIVASDA  180 (286)
Q Consensus       107 py~~ny~~l~~~E~~~l~~~~~~----~~~~VL~IG~G~lp~tai~lA~--~~~~g~~V~~iDid~~ai~~Ar~~~~~~g  180 (286)
                      -.|+.|++-+..  .+..+....    .+..|++||||.+|++...+..  +.....+|.+|+.++.|+...++++++.|
T Consensus       161 vKY~~Ye~AI~~--al~D~~~~~~~~~~~~vVldVGAGrGpL~~~al~A~~~~~~a~~VyAVEkn~~A~~~l~~~v~~n~  238 (448)
T PF05185_consen  161 VKYDQYERAIEE--ALKDRVRKNSYSSKDKVVLDVGAGRGPLSMFALQAGARAGGAVKVYAVEKNPNAVVTLQKRVNANG  238 (448)
T ss_dssp             HHHHHHHHHHHH--HHHHHHTTS-SEETT-EEEEES-TTSHHHHHHHHTTHHHCCESEEEEEESSTHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHH--HHHhhhhhccccccceEEEEeCCCccHHHHHHHHHHHHhCCCeEEEEEcCCHhHHHHHHHHHHhcC
Confidence            345667666533  211122211    2578999999999997554432  12235799999999999999999888899


Q ss_pred             CCCCCeEEEEccccchhhcCCCcceeehhhhccC--ChhHHHHHHHHHHhhccCCcEEEE
Q 042119          181 EFEGRMKFLTRDIMEVKEQLGEYDCIFLAALVGM--SKEEKLTILGHIRKYMKDGGILLV  238 (286)
Q Consensus       181 ~l~~~i~f~~~D~~~~~~~l~~fD~V~~aalvg~--~~~~k~~vl~~l~~~l~pgg~lv~  238 (286)
                       ++++|+++.+|+.++..+. ..|+|+-. +.|.  +-|--.++|....|.|||||+++=
T Consensus       239 -w~~~V~vi~~d~r~v~lpe-kvDIIVSE-lLGsfg~nEl~pE~Lda~~rfLkp~Gi~IP  295 (448)
T PF05185_consen  239 -WGDKVTVIHGDMREVELPE-KVDIIVSE-LLGSFGDNELSPECLDAADRFLKPDGIMIP  295 (448)
T ss_dssp             -TTTTEEEEES-TTTSCHSS--EEEEEE----BTTBTTTSHHHHHHHGGGGEEEEEEEES
T ss_pred             -CCCeEEEEeCcccCCCCCC-ceeEEEEe-ccCCccccccCHHHHHHHHhhcCCCCEEeC
Confidence             8999999999998876653 79998632 2221  223444689999999999998764

These proteins seem to play a role in Jak signalling.; GO: 0008168 methyltransferase activity, 0005737 cytoplasm; PDB: 2Y1W_C 2Y1X_D 2V7E_B 2V74_H 3R0Q_G 3B3F_B 3B3J_A 3B3G_A 3UA3_A 3UA4_B ....

>PRK04148 hypothetical protein; Provisional

Probab=98.53  E-value=1.5e-06  Score=72.06  Aligned_cols=93  Identities=14%  Similarity=0.223  Sum_probs=69.3

Q ss_pred             CCCCEEEEeccCCChh-hHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEccccchhhcC-CCccee
Q 042119          129 VQPKKVAFVGSGPMPL-TSIIMAKHHLTSTHFDNFDIDEAANDVARSIVASDAEFEGRMKFLTRDIMEVKEQL-GEYDCI  206 (286)
Q Consensus       129 ~~~~~VL~IG~G~lp~-tai~lA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~g~l~~~i~f~~~D~~~~~~~l-~~fD~V  206 (286)
                      ..+++|++|||| .|. .|..|++   .|..|+++|++|++++.|++.    +     ++++++|+.+-...+ .++|+|
T Consensus        15 ~~~~kileIG~G-fG~~vA~~L~~---~G~~ViaIDi~~~aV~~a~~~----~-----~~~v~dDlf~p~~~~y~~a~li   81 (134)
T PRK04148         15 GKNKKIVELGIG-FYFKVAKKLKE---SGFDVIVIDINEKAVEKAKKL----G-----LNAFVDDLFNPNLEIYKNAKLI   81 (134)
T ss_pred             ccCCEEEEEEec-CCHHHHHHHHH---CCCEEEEEECCHHHHHHHHHh----C-----CeEEECcCCCCCHHHHhcCCEE
Confidence            456899999999 554 7778887   799999999999999988775    3     589999997755554 579999


Q ss_pred             ehhhhccCChhHHHHHHHHHHhhccCCcEEEEee
Q 042119          207 FLAALVGMSKEEKLTILGHIRKYMKDGGILLVRS  240 (286)
Q Consensus       207 ~~aalvg~~~~~k~~vl~~l~~~l~pgg~lv~r~  240 (286)
                      +....    +++-..-+.++++.+  |+-++++.
T Consensus        82 ysirp----p~el~~~~~~la~~~--~~~~~i~~  109 (134)
T PRK04148         82 YSIRP----PRDLQPFILELAKKI--NVPLIIKP  109 (134)
T ss_pred             EEeCC----CHHHHHHHHHHHHHc--CCCEEEEc
Confidence            95432    245555666666654  46666664

>PF03291 Pox_MCEL: mRNA capping enzyme; InterPro: IPR004971 This is a family of viral mRNA capping enzymes

Probab=98.52  E-value=5.3e-07  Score=85.52  Aligned_cols=110  Identities=20%  Similarity=0.223  Sum_probs=71.6

Q ss_pred             CCCEEEEeccCCChhhHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCC--------CCCCeEEEEccccchh--h-
Q 042119          130 QPKKVAFVGSGPMPLTSIIMAKHHLTSTHFDNFDIDEAANDVARSIVASDAE--------FEGRMKFLTRDIMEVK--E-  198 (286)
Q Consensus       130 ~~~~VL~IG~G~lp~tai~lA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~g~--------l~~~i~f~~~D~~~~~--~-  198 (286)
                      ++.+|||+|||-+|-.-=|...   .-..++|+||++++++.|++..+....        ..-...|+++|.....  . 
T Consensus        62 ~~~~VLDl~CGkGGDL~Kw~~~---~i~~~vg~Dis~~si~ea~~Ry~~~~~~~~~~~~~~~f~a~f~~~D~f~~~l~~~  138 (331)
T PF03291_consen   62 PGLTVLDLCCGKGGDLQKWQKA---KIKHYVGIDISEESIEEARERYKQLKKRNNSKQYRFDFIAEFIAADCFSESLREK  138 (331)
T ss_dssp             TT-EEEEET-TTTTTHHHHHHT---T-SEEEEEES-HHHHHHHHHHHHHHHTSTT-HTSEECCEEEEEESTTCCSHHHCT
T ss_pred             CCCeEEEecCCCchhHHHHHhc---CCCEEEEEeCCHHHHHHHHHHHHHhccccccccccccchhheeccccccchhhhh
Confidence            7899999999976655444433   558899999999999999999833210        1124578888875321  1 


Q ss_pred             -cC--CCcceeeh-hhhc-cCChhHHHH-HHHHHHhhccCCcEEEEeecC
Q 042119          199 -QL--GEYDCIFL-AALV-GMSKEEKLT-ILGHIRKYMKDGGILLVRSAK  242 (286)
Q Consensus       199 -~l--~~fD~V~~-aalv-g~~~~~k~~-vl~~l~~~l~pgg~lv~r~~~  242 (286)
                       ..  ..||+|=. .++. ....+.+.+ +|..+.+.|+|||+++....+
T Consensus       139 ~~~~~~~FDvVScQFalHY~Fese~~ar~~l~Nvs~~Lk~GG~FIgT~~d  188 (331)
T PF03291_consen  139 LPPRSRKFDVVSCQFALHYAFESEEKARQFLKNVSSLLKPGGYFIGTTPD  188 (331)
T ss_dssp             SSSTTS-EEEEEEES-GGGGGSSHHHHHHHHHHHHHTEEEEEEEEEEEE-
T ss_pred             ccccCCCcceeehHHHHHHhcCCHHHHHHHHHHHHHhcCCCCEEEEEecC
Confidence             11  37999832 2232 333355555 999999999999999987643

The enzyme catalyses the first two reactions in the mRNA cap formation pathway. It is a heterodimer consisting of a large and small subunit. This entry is the large subunit. ; GO: 0006370 mRNA capping; PDB: 3EPP_A 3BGV_C 2VDW_C 1RI5_A 1RI3_A 1RI1_A 1Z3C_A 1RI2_A 2HV9_A 1RI4_A.

>PF07021 MetW: Methionine biosynthesis protein MetW; InterPro: IPR010743 This family consists of several bacterial and one archaeal methionine biosynthesis MetW proteins

Probab=98.50  E-value=9.5e-07  Score=77.35  Aligned_cols=96  Identities=14%  Similarity=0.140  Sum_probs=68.8

Q ss_pred             CCCCCEEEEeccCCChhhHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEccccchhh--cCCCcce
Q 042119          128 VVQPKKVAFVGSGPMPLTSIIMAKHHLTSTHFDNFDIDEAANDVARSIVASDAEFEGRMKFLTRDIMEVKE--QLGEYDC  205 (286)
Q Consensus       128 ~~~~~~VL~IG~G~lp~tai~lA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~g~l~~~i~f~~~D~~~~~~--~l~~fD~  205 (286)
                      +.+++||||+|||-+-+- ..|.+  ..+++..|+|+|++.+..|.+.    |     ++.+++|+.+-..  +.+.||.
T Consensus        11 I~pgsrVLDLGCGdG~LL-~~L~~--~k~v~g~GvEid~~~v~~cv~r----G-----v~Viq~Dld~gL~~f~d~sFD~   78 (193)
T PF07021_consen   11 IEPGSRVLDLGCGDGELL-AYLKD--EKQVDGYGVEIDPDNVAACVAR----G-----VSVIQGDLDEGLADFPDQSFDY   78 (193)
T ss_pred             cCCCCEEEecCCCchHHH-HHHHH--hcCCeEEEEecCHHHHHHHHHc----C-----CCEEECCHHHhHhhCCCCCccE
Confidence            478999999999975444 33433  3799999999999998777653    4     6789999876443  3357999


Q ss_pred             eehhhhccCChhHHHHHHHHHHhhccCCcEEEEe
Q 042119          206 IFLAALVGMSKEEKLTILGHIRKYMKDGGILLVR  239 (286)
Q Consensus       206 V~~aalvg~~~~~k~~vl~~l~~~l~pgg~lv~r  239 (286)
                      |+++-.+.. .....++|+++.|+   |...++.
T Consensus        79 VIlsqtLQ~-~~~P~~vL~EmlRV---gr~~IVs  108 (193)
T PF07021_consen   79 VILSQTLQA-VRRPDEVLEEMLRV---GRRAIVS  108 (193)
T ss_pred             EehHhHHHh-HhHHHHHHHHHHHh---cCeEEEE
Confidence            998866522 13455789998766   4444443

Biosynthesis of methionine from homoserine in Pseudomonas putida takes place in three steps. The first step is the acylation of homoserine to yield an acyl-L-homoserine. This reaction is catalysed by the products of the metXW genes and is equivalent to the first step in enterobacteria, Gram-positive bacteria and fungi, except that in these microorganisms the reaction is catalysed by a single polypeptide (the product of the metA gene in Escherichia coli and the met5 gene product in Neurospora crassa). In P. putida, as in Gram-positive bacteria and certain fungi, the second and third steps are a direct sulphydrylation that converts the O-acyl-L-homoserine into homocysteine and further methylation to yield methionine. The latter reaction can be mediated by either of the two methionine synthetases present in the cells [].

>PRK05031 tRNA (uracil-5-)-methyltransferase; Validated

Probab=98.50  E-value=5.1e-07  Score=86.56  Aligned_cols=96  Identities=13%  Similarity=0.208  Sum_probs=69.6

Q ss_pred             CCEEEEeccCCChhhHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEccccchhhcC----------
Q 042119          131 PKKVAFVGSGPMPLTSIIMAKHHLTSTHFDNFDIDEAANDVARSIVASDAEFEGRMKFLTRDIMEVKEQL----------  200 (286)
Q Consensus       131 ~~~VL~IG~G~lp~tai~lA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~g~l~~~i~f~~~D~~~~~~~l----------  200 (286)
                      +.+|||++||.+.+ ++.+|+   ...+|++||+|++|++.|+++++..| + ++++|+++|+.+....+          
T Consensus       207 ~~~vLDl~~G~G~~-sl~la~---~~~~v~~vE~~~~ai~~a~~N~~~~~-~-~~v~~~~~d~~~~l~~~~~~~~~~~~~  280 (362)
T PRK05031        207 KGDLLELYCGNGNF-TLALAR---NFRRVLATEISKPSVAAAQYNIAANG-I-DNVQIIRMSAEEFTQAMNGVREFNRLK  280 (362)
T ss_pred             CCeEEEEeccccHH-HHHHHh---hCCEEEEEECCHHHHHHHHHHHHHhC-C-CcEEEEECCHHHHHHHHhhcccccccc
Confidence            36899999997545 568887   34689999999999999999999999 4 58999999998754322          


Q ss_pred             -----C-Ccceeehhhhc-cCChhHHHHHHHHHHhhccCCcEEEEe
Q 042119          201 -----G-EYDCIFLAALV-GMSKEEKLTILGHIRKYMKDGGILLVR  239 (286)
Q Consensus       201 -----~-~fD~V~~aalv-g~~~~~k~~vl~~l~~~l~pgg~lv~r  239 (286)
                           + .||+||++--= |+    ..++++.+.+   |++++.+.
T Consensus       281 ~~~~~~~~~D~v~lDPPR~G~----~~~~l~~l~~---~~~ivyvS  319 (362)
T PRK05031        281 GIDLKSYNFSTIFVDPPRAGL----DDETLKLVQA---YERILYIS  319 (362)
T ss_pred             cccccCCCCCEEEECCCCCCC----cHHHHHHHHc---cCCEEEEE
Confidence                 1 48999988321 21    2345555544   55554443

>PHA03411 putative methyltransferase; Provisional

Probab=98.49  E-value=6.6e-07  Score=82.63  Aligned_cols=101  Identities=10%  Similarity=0.164  Sum_probs=70.1

Q ss_pred             CCCCEEEEeccCCChhhHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEccccchhhcCCCcceeeh
Q 042119          129 VQPKKVAFVGSGPMPLTSIIMAKHHLTSTHFDNFDIDEAANDVARSIVASDAEFEGRMKFLTRDIMEVKEQLGEYDCIFL  208 (286)
Q Consensus       129 ~~~~~VL~IG~G~lp~tai~lA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~g~l~~~i~f~~~D~~~~~~~l~~fD~V~~  208 (286)
                      ..+.+|||+|||.+.++ +.+++ ..++.+|+++|+|+++++.|++.   .    .+++++++|+.+...+ ..||+|+.
T Consensus        63 ~~~grVLDLGcGsGils-l~la~-r~~~~~V~gVDisp~al~~Ar~n---~----~~v~~v~~D~~e~~~~-~kFDlIIs  132 (279)
T PHA03411         63 HCTGKVLDLCAGIGRLS-FCMLH-RCKPEKIVCVELNPEFARIGKRL---L----PEAEWITSDVFEFESN-EKFDVVIS  132 (279)
T ss_pred             ccCCeEEEcCCCCCHHH-HHHHH-hCCCCEEEEEECCHHHHHHHHHh---C----cCCEEEECchhhhccc-CCCcEEEE
Confidence            34679999999975554 44554 24578999999999999999985   2    3689999999875532 47999986


Q ss_pred             hh-hccCChhHH------------------HHHHHHHHhhccCCcEEEEe
Q 042119          209 AA-LVGMSKEEK------------------LTILGHIRKYMKDGGILLVR  239 (286)
Q Consensus       209 aa-lvg~~~~~k------------------~~vl~~l~~~l~pgg~lv~r  239 (286)
                      .- +......+.                  .+.+..+...|+|+|.+.+.
T Consensus       133 NPPF~~l~~~d~~~~~~~~GG~~g~~~l~~~~~l~~v~~~L~p~G~~~~~  182 (279)
T PHA03411        133 NPPFGKINTTDTKDVFEYTGGEFEFKVMTLGQKFADVGYFIVPTGSAGFA  182 (279)
T ss_pred             cCCccccCchhhhhhhhhccCccccccccHHHHHhhhHheecCCceEEEE
Confidence            43 211111111                  24566777888888876554

>COG0357 GidB Predicted S-adenosylmethionine-dependent methyltransferase involved in bacterial cell division [Cell envelope biogenesis, outer membrane]

Probab=98.46  E-value=7.1e-07  Score=79.70  Aligned_cols=99  Identities=17%  Similarity=0.179  Sum_probs=83.0

Q ss_pred             CCEEEEeccCCChhhHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEccccchhhcCCCcceeehhh
Q 042119          131 PKKVAFVGSGPMPLTSIIMAKHHLTSTHFDNFDIDEAANDVARSIVASDAEFEGRMKFLTRDIMEVKEQLGEYDCIFLAA  210 (286)
Q Consensus       131 ~~~VL~IG~G~lp~tai~lA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~g~l~~~i~f~~~D~~~~~~~l~~fD~V~~aa  210 (286)
                      +++++|||||+ |+..+.+|= ..|+.+||-+|.....++.=+++.+.+|+  ++++++++.+.++......||+|..-|
T Consensus        68 ~~~~~DIGSGa-GfPGipLAI-~~p~~~vtLles~~Kk~~FL~~~~~eL~L--~nv~i~~~RaE~~~~~~~~~D~vtsRA  143 (215)
T COG0357          68 AKRVLDIGSGA-GFPGIPLAI-AFPDLKVTLLESLGKKIAFLREVKKELGL--ENVEIVHGRAEEFGQEKKQYDVVTSRA  143 (215)
T ss_pred             CCEEEEeCCCC-CCchhhHHH-hccCCcEEEEccCchHHHHHHHHHHHhCC--CCeEEehhhHhhcccccccCcEEEeeh
Confidence            68999999995 999999985 57999999999999999999999999995  789999999988765432299998666


Q ss_pred             hccCChhHHHHHHHHHHhhccCCcEEEE
Q 042119          211 LVGMSKEEKLTILGHIRKYMKDGGILLV  238 (286)
Q Consensus       211 lvg~~~~~k~~vl~~l~~~l~pgg~lv~  238 (286)
                      +-     +-..+.+-....+++||.++.
T Consensus       144 va-----~L~~l~e~~~pllk~~g~~~~  166 (215)
T COG0357         144 VA-----SLNVLLELCLPLLKVGGGFLA  166 (215)
T ss_pred             cc-----chHHHHHHHHHhcccCCcchh
Confidence            53     444677888899999887653

>PRK04338 N(2),N(2)-dimethylguanosine tRNA methyltransferase; Provisional

Probab=98.45  E-value=1.2e-06  Score=84.59  Aligned_cols=101  Identities=17%  Similarity=0.211  Sum_probs=78.6

Q ss_pred             CCEEEEeccCCChhhHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEccccchhhcCCCcceeehhh
Q 042119          131 PKKVAFVGSGPMPLTSIIMAKHHLTSTHFDNFDIDEAANDVARSIVASDAEFEGRMKFLTRDIMEVKEQLGEYDCIFLAA  210 (286)
Q Consensus       131 ~~~VL~IG~G~lp~tai~lA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~g~l~~~i~f~~~D~~~~~~~l~~fD~V~~aa  210 (286)
                      +.+|||++||. |.-++.+|+. ....+|+++|+++++++.++++++..| + +++++.++|+.++......||+|+++-
T Consensus        58 ~~~vLDl~aGs-G~~~l~~a~~-~~~~~V~a~Din~~Av~~a~~N~~~N~-~-~~~~v~~~Da~~~l~~~~~fD~V~lDP  133 (382)
T PRK04338         58 RESVLDALSAS-GIRGIRYALE-TGVEKVTLNDINPDAVELIKKNLELNG-L-ENEKVFNKDANALLHEERKFDVVDIDP  133 (382)
T ss_pred             CCEEEECCCcc-cHHHHHHHHH-CCCCEEEEEeCCHHHHHHHHHHHHHhC-C-CceEEEhhhHHHHHhhcCCCCEEEECC
Confidence            46999999996 5555667662 334589999999999999999999988 4 467899999977554234699999886


Q ss_pred             hccCChhHHHHHHHHHHhhccCCcEEEEee
Q 042119          211 LVGMSKEEKLTILGHIRKYMKDGGILLVRS  240 (286)
Q Consensus       211 lvg~~~~~k~~vl~~l~~~l~pgg~lv~r~  240 (286)
                      . |.    ...+++...+.+++||++.+..
T Consensus       134 ~-Gs----~~~~l~~al~~~~~~gilyvSA  158 (382)
T PRK04338        134 F-GS----PAPFLDSAIRSVKRGGLLCVTA  158 (382)
T ss_pred             C-CC----cHHHHHHHHHHhcCCCEEEEEe
Confidence            4 42    2458888677789999998864

>PRK14896 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Provisional

Probab=98.45  E-value=1.1e-06  Score=80.22  Aligned_cols=73  Identities=18%  Similarity=0.266  Sum_probs=57.7

Q ss_pred             cCCCCCCEEEEeccCCChhhHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEccccchhhcCCCcce
Q 042119          126 NGVVQPKKVAFVGSGPMPLTSIIMAKHHLTSTHFDNFDIDEAANDVARSIVASDAEFEGRMKFLTRDIMEVKEQLGEYDC  205 (286)
Q Consensus       126 ~~~~~~~~VL~IG~G~lp~tai~lA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~g~l~~~i~f~~~D~~~~~~~l~~fD~  205 (286)
                      ....++++|+|||||++.+ +..+++   .+.+|+++|+|+.+++.+++.+...    ++++++++|+.+++  +..||.
T Consensus        25 ~~~~~~~~VLEIG~G~G~l-t~~L~~---~~~~v~~vEid~~~~~~l~~~~~~~----~~v~ii~~D~~~~~--~~~~d~   94 (258)
T PRK14896         25 AEDTDGDPVLEIGPGKGAL-TDELAK---RAKKVYAIELDPRLAEFLRDDEIAA----GNVEIIEGDALKVD--LPEFNK   94 (258)
T ss_pred             cCCCCcCeEEEEeCccCHH-HHHHHH---hCCEEEEEECCHHHHHHHHHHhccC----CCEEEEEeccccCC--chhceE
Confidence            3557789999999997554 466776   3579999999999999999887542    57999999997754  356888


Q ss_pred             eeh
Q 042119          206 IFL  208 (286)
Q Consensus       206 V~~  208 (286)
                      |+.
T Consensus        95 Vv~   97 (258)
T PRK14896         95 VVS   97 (258)
T ss_pred             EEE
Confidence            764

>PRK10611 chemotaxis methyltransferase CheR; Provisional

Probab=98.44  E-value=7.3e-07  Score=82.98  Aligned_cols=114  Identities=18%  Similarity=0.242  Sum_probs=82.9

Q ss_pred             CCCEEEEeccCCC--hhhHHHHHhhcCC----CcEEEEEeCChHHHHHHHHHH------------------Hhc-----C
Q 042119          130 QPKKVAFVGSGPM--PLTSIIMAKHHLT----STHFDNFDIDEAANDVARSIV------------------ASD-----A  180 (286)
Q Consensus       130 ~~~~VL~IG~G~l--p~tai~lA~~~~~----g~~V~~iDid~~ai~~Ar~~~------------------~~~-----g  180 (286)
                      .+-||.-.||+++  |+|..++.....+    +.+|+|.|||+.+++.|++-+                  .+.     |
T Consensus       115 ~~irIWSAgCStGEEpYSlAmll~e~~~~~~~~~~I~atDIs~~aL~~Ar~G~Y~~~~~r~~p~~~~~ryF~~~~~~~~~  194 (287)
T PRK10611        115 GEYRVWSAAASTGEEPYSIAMTLADTLGTAPGRWKVFASDIDTEVLEKARSGIYRQEELKTLSPQQLQRYFMRGTGPHEG  194 (287)
T ss_pred             CCEEEEEccccCCHHHHHHHHHHHHhhcccCCCcEEEEEECCHHHHHHHHhCCCCHHHHhcCCHHHHHHHcccccCCCCc
Confidence            3479999999864  4444443332221    478999999999999999752                  110     1


Q ss_pred             ------CCCCCeEEEEccccchhhc-CCCcceeehhh-hccCChhHHHHHHHHHHhhccCCcEEEEeecCc
Q 042119          181 ------EFEGRMKFLTRDIMEVKEQ-LGEYDCIFLAA-LVGMSKEEKLTILGHIRKYMKDGGILLVRSAKG  243 (286)
Q Consensus       181 ------~l~~~i~f~~~D~~~~~~~-l~~fD~V~~aa-lvg~~~~~k~~vl~~l~~~l~pgg~lv~r~~~g  243 (286)
                            .+.++|+|...|+.+.+.+ .+.||+|+.-. ++..+.+.+.++++.+++.|+|||.|++-....
T Consensus       195 ~~~v~~~lr~~V~F~~~NL~~~~~~~~~~fD~I~cRNvliyF~~~~~~~vl~~l~~~L~pgG~L~lG~sEs  265 (287)
T PRK10611        195 LVRVRQELANYVDFQQLNLLAKQWAVPGPFDAIFCRNVMIYFDKTTQERILRRFVPLLKPDGLLFAGHSEN  265 (287)
T ss_pred             eEEEChHHHccCEEEcccCCCCCCccCCCcceeeHhhHHhcCCHHHHHHHHHHHHHHhCCCcEEEEeCccc
Confidence                  0347889999999764332 46899999643 446688899999999999999999998865443

>TIGR02143 trmA_only tRNA (uracil-5-)-methyltransferase

Probab=98.44  E-value=1e-06  Score=84.27  Aligned_cols=96  Identities=13%  Similarity=0.164  Sum_probs=69.6

Q ss_pred             CCEEEEeccCCChhhHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEccccchhhc------C---C
Q 042119          131 PKKVAFVGSGPMPLTSIIMAKHHLTSTHFDNFDIDEAANDVARSIVASDAEFEGRMKFLTRDIMEVKEQ------L---G  201 (286)
Q Consensus       131 ~~~VL~IG~G~lp~tai~lA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~g~l~~~i~f~~~D~~~~~~~------l---~  201 (286)
                      +.+|||+|||. |.-++.+|+.   ..+|+++|++++|++.|+++++..| + ++++|+++|+.+....      +   +
T Consensus       198 ~~~vlDl~~G~-G~~sl~la~~---~~~v~~vE~~~~av~~a~~n~~~~~-~-~~v~~~~~d~~~~~~~~~~~~~~~~~~  271 (353)
T TIGR02143       198 KGDLLELYCGN-GNFSLALAQN---FRRVLATEIAKPSVNAAQYNIAANN-I-DNVQIIRMSAEEFTQAMNGVREFRRLK  271 (353)
T ss_pred             CCcEEEEeccc-cHHHHHHHHh---CCEEEEEECCHHHHHHHHHHHHHcC-C-CcEEEEEcCHHHHHHHHhhcccccccc
Confidence            35799999996 5556788882   3599999999999999999999998 4 5799999999875542      1   1


Q ss_pred             -------Ccceeehhhh-ccCChhHHHHHHHHHHhhccCCcEEEEe
Q 042119          202 -------EYDCIFLAAL-VGMSKEEKLTILGHIRKYMKDGGILLVR  239 (286)
Q Consensus       202 -------~fD~V~~aal-vg~~~~~k~~vl~~l~~~l~pgg~lv~r  239 (286)
                             .||+||++-- .|+    ..++++.+.+   |++++.+.
T Consensus       272 ~~~~~~~~~d~v~lDPPR~G~----~~~~l~~l~~---~~~ivYvs  310 (353)
T TIGR02143       272 GIDLKSYNCSTIFVDPPRAGL----DPDTCKLVQA---YERILYIS  310 (353)
T ss_pred             ccccccCCCCEEEECCCCCCC----cHHHHHHHHc---CCcEEEEE
Confidence                   3899998732 122    2245555544   65555553

This family consists exclusively of proteins believed to act as tRNA (uracil-5-)-methyltransferase. All members of far are proteobacterial. The seed alignment was taken directly from pfam05958 in Pfam 12.0, but higher cutoffs are used to select only functionally equivalent proteins. Homologous proteins excluded by the higher cutoff scores of this model include other uracil methyltransferases, such as RumA, active on rRNA.

>PF10294 Methyltransf_16: Putative methyltransferase; InterPro: IPR019410 There are a number of unidentified genes that have a high probability of coding for methyltransferases

Probab=98.43  E-value=1.7e-06  Score=74.61  Aligned_cols=108  Identities=19%  Similarity=0.267  Sum_probs=71.4

Q ss_pred             CCCCEEEEeccCCChhhHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcC-CCCCCeEEEEccccchh----hcCCCc
Q 042119          129 VQPKKVAFVGSGPMPLTSIIMAKHHLTSTHFDNFDIDEAANDVARSIVASDA-EFEGRMKFLTRDIMEVK----EQLGEY  203 (286)
Q Consensus       129 ~~~~~VL~IG~G~lp~tai~lA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~g-~l~~~i~f~~~D~~~~~----~~l~~f  203 (286)
                      ..+++||++||| .|+.++.+|+ ...+.+|+.-|.++ .++..+.+++..+ ....++++..-|-.+..    .+...|
T Consensus        44 ~~~~~VLELGaG-~Gl~gi~~a~-~~~~~~Vv~TD~~~-~l~~l~~Ni~~N~~~~~~~v~v~~L~Wg~~~~~~~~~~~~~  120 (173)
T PF10294_consen   44 FRGKRVLELGAG-TGLPGIAAAK-LFGAARVVLTDYNE-VLELLRRNIELNGSLLDGRVSVRPLDWGDELDSDLLEPHSF  120 (173)
T ss_dssp             TTTSEEEETT-T-TSHHHHHHHH-T-T-SEEEEEE-S--HHHHHHHHHHTT--------EEEE--TTS-HHHHHHS-SSB
T ss_pred             cCCceEEEECCc-cchhHHHHHh-ccCCceEEEeccch-hhHHHHHHHHhccccccccccCcEEEecCcccccccccccC
Confidence            678999999999 5999999998 34688999999999 9999999998754 12467888777653311    122479


Q ss_pred             ceeehhhhccCChhHHHHHHHHHHhhccCCcEEEEee
Q 042119          204 DCIFLAALVGMSKEEKLTILGHIRKYMKDGGILLVRS  240 (286)
Q Consensus       204 D~V~~aalvg~~~~~k~~vl~~l~~~l~pgg~lv~r~  240 (286)
                      |+|+.+=.+ ...+.-..++..+.+.++|++.+++-.
T Consensus       121 D~IlasDv~-Y~~~~~~~L~~tl~~ll~~~~~vl~~~  156 (173)
T PF10294_consen  121 DVILASDVL-YDEELFEPLVRTLKRLLKPNGKVLLAY  156 (173)
T ss_dssp             SEEEEES---S-GGGHHHHHHHHHHHBTT-TTEEEEE
T ss_pred             CEEEEeccc-chHHHHHHHHHHHHHHhCCCCEEEEEe
Confidence            999865443 345677789999999999999876654

They make up approximately 0.6-1.6% of the genes in the yeast, human, mouse, Drosophila melanogaster, Caenorhabditis elegans, Arabidopsis thaliana, and Escherichia coli genomes []. This entry represents putative nicotinamide N-methyltransferases involved in rDNA silencing and in lifespan determination. ; PDB: 3BZB_A.

>KOG2899 consensus Predicted methyltransferase [General function prediction only]

Probab=98.42  E-value=1.1e-06  Score=79.42  Aligned_cols=109  Identities=19%  Similarity=0.316  Sum_probs=74.9

Q ss_pred             CCCCEEEEeccCCChhhHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCC------------------------
Q 042119          129 VQPKKVAFVGSGPMPLTSIIMAKHHLTSTHFDNFDIDEAANDVARSIVASDAEFEG------------------------  184 (286)
Q Consensus       129 ~~~~~VL~IG~G~lp~tai~lA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~g~l~~------------------------  184 (286)
                      -.+..+|||||-. |.-++.+|+ .+..-.|.|+|||+..++.||+.++..-....                        
T Consensus        57 f~~~~~LDIGCNs-G~lt~~iak-~F~~r~iLGvDID~~LI~~Ark~~r~~~~~~~~~~~~~~~~~~~~~~~is~~~~a~  134 (288)
T KOG2899|consen   57 FEPKQALDIGCNS-GFLTLSIAK-DFGPRRILGVDIDPVLIQRARKEIRFPCDHETEVSGKFPASFGVQFGPISQRNEAD  134 (288)
T ss_pred             cCcceeEeccCCc-chhHHHHHH-hhccceeeEeeccHHHHHHHHHhccccccccccccCCCcccccccccccccccccc
Confidence            4678999999985 777889999 46556799999999999999998765321111                        


Q ss_pred             ---------CeEEEEcccc----chh-hcCCCcceeehhhh---c--cCChhHHHHHHHHHHhhccCCcEEEEe
Q 042119          185 ---------RMKFLTRDIM----EVK-EQLGEYDCIFLAAL---V--GMSKEEKLTILGHIRKYMKDGGILLVR  239 (286)
Q Consensus       185 ---------~i~f~~~D~~----~~~-~~l~~fD~V~~aal---v--g~~~~~k~~vl~~l~~~l~pgg~lv~r  239 (286)
                               ++.|...+..    ++. .....||+|+.-+.   |  -|..+--.+++.++.+++.|||+||+-
T Consensus       135 ~a~t~~~p~n~~f~~~n~vle~~dfl~~~~~~fDiIlcLSiTkWIHLNwgD~GL~~ff~kis~ll~pgGiLvvE  208 (288)
T KOG2899|consen  135 RAFTTDFPDNVWFQKENYVLESDDFLDMIQPEFDIILCLSITKWIHLNWGDDGLRRFFRKISSLLHPGGILVVE  208 (288)
T ss_pred             ccccccCCcchhcccccEEEecchhhhhccccccEEEEEEeeeeEecccccHHHHHHHHHHHHhhCcCcEEEEc
Confidence                     1112111110    011 12247999975442   2  234456678999999999999999994

>PF12147 Methyltransf_20: Putative methyltransferase; InterPro: IPR022744 This C-terminal region is found in bacteria and eukaryotes and is approximately 110 amino acids in length

Probab=98.42  E-value=6.2e-06  Score=76.41  Aligned_cols=123  Identities=15%  Similarity=0.189  Sum_probs=91.7

Q ss_pred             hhhhHHHHHHHHhcCCCCCCEEEEeccCCChhhHHHHHhhcCCC--cEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEE
Q 042119          113 VKLSKLEYTILSENGVVQPKKVAFVGSGPMPLTSIIMAKHHLTS--THFDNFDIDEAANDVARSIVASDAEFEGRMKFLT  190 (286)
Q Consensus       113 ~~l~~~E~~~l~~~~~~~~~~VL~IG~G~lp~tai~lA~~~~~g--~~V~~iDid~~ai~~Ar~~~~~~g~l~~~i~f~~  190 (286)
                      ..+++..+..|...  ..+-||++|-||++-+-.=.+++  .+.  .+|.-.|.||..++.++++++..| +++-++|++
T Consensus       120 ~~~i~~ai~~L~~~--g~pvrIlDIAaG~GRYvlDal~~--~~~~~~~i~LrDys~~Nv~~g~~li~~~g-L~~i~~f~~  194 (311)
T PF12147_consen  120 EELIRQAIARLREQ--GRPVRILDIAAGHGRYVLDALEK--HPERPDSILLRDYSPINVEKGRALIAERG-LEDIARFEQ  194 (311)
T ss_pred             HHHHHHHHHHHHhc--CCceEEEEeccCCcHHHHHHHHh--CCCCCceEEEEeCCHHHHHHHHHHHHHcC-CccceEEEe
Confidence            34444444444322  47789999999987665555555  454  799999999999999999999999 787779999


Q ss_pred             ccccchhh--cCC-CcceeehhhhccC--ChhHHHHHHHHHHhhccCCcEEEEee
Q 042119          191 RDIMEVKE--QLG-EYDCIFLAALVGM--SKEEKLTILGHIRKYMKDGGILLVRS  240 (286)
Q Consensus       191 ~D~~~~~~--~l~-~fD~V~~aalvg~--~~~~k~~vl~~l~~~l~pgg~lv~r~  240 (286)
                      +|+.+...  .+. ..|+++++.+.+.  +-+.-.+.+..+.+.+.|||.+|+..
T Consensus       195 ~dAfd~~~l~~l~p~P~l~iVsGL~ElF~Dn~lv~~sl~gl~~al~pgG~lIyTg  249 (311)
T PF12147_consen  195 GDAFDRDSLAALDPAPTLAIVSGLYELFPDNDLVRRSLAGLARALEPGGYLIYTG  249 (311)
T ss_pred             cCCCCHhHhhccCCCCCEEEEecchhhCCcHHHHHHHHHHHHHHhCCCcEEEEcC
Confidence            99977422  222 4799998877633  21223457899999999999999976

It is found in association with PF00561 from PFAM. Many members are annotated as being lysophospholipases, and others as alpha-beta hydrolase fold-containing proteins. This domain belongs to the S-adenosyl-L-methionine-dependent methyltransferases superfamily.

>PF01739 CheR: CheR methyltransferase, SAM binding domain; InterPro: IPR022642 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals

Probab=98.40  E-value=2e-06  Score=75.91  Aligned_cols=117  Identities=17%  Similarity=0.288  Sum_probs=73.2

Q ss_pred             CCCCCCEEEEeccCCC--hhhHHHHHhhc---CC--CcEEEEEeCChHHHHHHHHHH--------------H-hc----C
Q 042119          127 GVVQPKKVAFVGSGPM--PLTSIIMAKHH---LT--STHFDNFDIDEAANDVARSIV--------------A-SD----A  180 (286)
Q Consensus       127 ~~~~~~~VL~IG~G~l--p~tai~lA~~~---~~--g~~V~~iDid~~ai~~Ar~~~--------------~-~~----g  180 (286)
                      ....+-||.-.||+++  |+|..++....   ..  ..+|+|.|+|+.+++.|++-+              + -.    |
T Consensus        28 ~~~~~lrIWSagCStGeE~YSlAmll~e~~~~~~~~~~~I~atDi~~~~L~~Ar~G~Y~~~~~~~~~~~~~~ryf~~~~~  107 (196)
T PF01739_consen   28 RPGRPLRIWSAGCSTGEEPYSLAMLLLELLPGALGWDFRILATDISPSALEKARAGIYPERSLRGLPPAYLRRYFTERDG  107 (196)
T ss_dssp             CS-S-EEEEETT-TTTHHHHHHHHHHHHHH-S-TT-SEEEEEEES-HHHHHHHHHTEEEGGGGTTS-HHHHHHHEEEE-C
T ss_pred             CCCCCeEEEECCCCCChhHHHHHHHHHHHhcccCCCceEEEEEECCHHHHHHHHhCCCCHHHHhhhHHHHHHHhccccCC
Confidence            3356789999999974  34444444321   12  479999999999999998521              0 01    1


Q ss_pred             C-------CCCCeEEEEccccchhhcCCCcceeehhh-hccCChhHHHHHHHHHHhhccCCcEEEEeecCc
Q 042119          181 E-------FEGRMKFLTRDIMEVKEQLGEYDCIFLAA-LVGMSKEEKLTILGHIRKYMKDGGILLVRSAKG  243 (286)
Q Consensus       181 ~-------l~~~i~f~~~D~~~~~~~l~~fD~V~~aa-lvg~~~~~k~~vl~~l~~~l~pgg~lv~r~~~g  243 (286)
                      .       +.++|+|...|+.+.....+.||+||.-. ++-++.+.+.++++.+++.|+|||.|++-.+..
T Consensus       108 ~~~~v~~~lr~~V~F~~~NL~~~~~~~~~fD~I~CRNVlIYF~~~~~~~vl~~l~~~L~pgG~L~lG~sE~  178 (196)
T PF01739_consen  108 GGYRVKPELRKMVRFRRHNLLDPDPPFGRFDLIFCRNVLIYFDPETQQRVLRRLHRSLKPGGYLFLGHSES  178 (196)
T ss_dssp             CCTTE-HHHHTTEEEEE--TT-S------EEEEEE-SSGGGS-HHHHHHHHHHHGGGEEEEEEEEE-TT--
T ss_pred             CceeEChHHcCceEEEecccCCCCcccCCccEEEecCEEEEeCHHHHHHHHHHHHHHcCCCCEEEEecCcc
Confidence            0       24689999999988334456899999654 447788999999999999999999999976543

The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Flagellated bacteria swim towards favourable chemicals and away from deleterious ones. Sensing of chemoeffector gradients involves chemotaxis receptors, transmembrane (TM) proteins that detect stimuli through their periplasmic domains and transduce the signals via their cytoplasmic domains []. Signalling outputs from these receptors are influenced both by the binding of the chemoeffector ligand to their periplasmic domains and by methylation of specific glutamate residues on their cytoplasmic domains. Methylation is catalysed by CheR, an S-adenosylmethionine-dependent methyltransferase [], which reversibly methylates specific glutamate residues within a coiled coil region, to form gamma-glutamyl methyl ester residues [, ]. The structure of the Salmonella typhimurium chemotaxis receptor methyltransferase CheR, bound to S-adenosylhomocysteine, has been determined to a resolution of 2.0 A []. The structure reveals CheR to be a two-domain protein, with a smaller N-terminal helical domain linked via a single polypeptide connection to a larger C-terminal alpha/beta domain. The C-terminal domain has the characteristics of a nucleotide-binding fold, with an insertion of a small anti-parallel beta-sheet subdomain. The S-adenosylhomocysteine-binding site is formed mainly by the large domain, with contributions from residues within the N-terminal domain and the linker region []. CheR proteins are part of the chemotaxis signaling mechanism which methylates the chemotaxis receptor at specific glutamate residues. This entry refers to the C-terminal SAM-binding domain of the CherR-type MCP methyltransferases, which are found in bacteria, archaea and green plants. This entry is found in association with PF03705 from PFAM. ; PDB: 1AF7_A 1BC5_A.

>PF03602 Cons_hypoth95: Conserved hypothetical protein 95; InterPro: IPR004398 This entry contains Ribosomal RNA small subunit methyltransferase D as well as the putative rRNA methyltransferase YlbH

Probab=98.39  E-value=1.5e-06  Score=75.86  Aligned_cols=109  Identities=13%  Similarity=0.217  Sum_probs=80.3

Q ss_pred             CCCCEEEEeccCCChhhHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEccccchhhc----CCCcc
Q 042119          129 VQPKKVAFVGSGPMPLTSIIMAKHHLTSTHFDNFDIDEAANDVARSIVASDAEFEGRMKFLTRDIMEVKEQ----LGEYD  204 (286)
Q Consensus       129 ~~~~~VL~IG~G~lp~tai~lA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~g~l~~~i~f~~~D~~~~~~~----l~~fD  204 (286)
                      -.+.++||+=||++.++...+.+   .-.+|+.||.|+.+++..+++++.++ ..++++.+++|+......    -..||
T Consensus        41 ~~g~~vLDLFaGSGalGlEALSR---GA~~v~fVE~~~~a~~~i~~N~~~l~-~~~~~~v~~~d~~~~l~~~~~~~~~fD  116 (183)
T PF03602_consen   41 LEGARVLDLFAGSGALGLEALSR---GAKSVVFVEKNRKAIKIIKKNLEKLG-LEDKIRVIKGDAFKFLLKLAKKGEKFD  116 (183)
T ss_dssp             HTT-EEEETT-TTSHHHHHHHHT---T-SEEEEEES-HHHHHHHHHHHHHHT--GGGEEEEESSHHHHHHHHHHCTS-EE
T ss_pred             cCCCeEEEcCCccCccHHHHHhc---CCCeEEEEECCHHHHHHHHHHHHHhC-CCcceeeeccCHHHHHHhhcccCCCce
Confidence            46899999988877777666665   45699999999999999999999999 678899999998765432    24799


Q ss_pred             eeehhhhccCChhH-HHHHHHHHH--hhccCCcEEEEeecCc
Q 042119          205 CIFLAALVGMSKEE-KLTILGHIR--KYMKDGGILLVRSAKG  243 (286)
Q Consensus       205 ~V~~aalvg~~~~~-k~~vl~~l~--~~l~pgg~lv~r~~~g  243 (286)
                      +||++---.  ... ..++++.+.  ..|+++|++++.....
T Consensus       117 iIflDPPY~--~~~~~~~~l~~l~~~~~l~~~~~ii~E~~~~  156 (183)
T PF03602_consen  117 IIFLDPPYA--KGLYYEELLELLAENNLLNEDGLIIIEHSKK  156 (183)
T ss_dssp             EEEE--STT--SCHHHHHHHHHHHHTTSEEEEEEEEEEEETT
T ss_pred             EEEECCCcc--cchHHHHHHHHHHHCCCCCCCEEEEEEecCC
Confidence            999985221  233 367888887  7899999999987543

They methylate the guanosine in position 966 of 16S rRNA in the assembled 30S particle [].; GO: 0008168 methyltransferase activity, 0031167 rRNA methylation; PDB: 3P9N_A 2ESR_B 2IFT_A 1WS6_A 2FPO_B 2FHP_A.

>KOG1661 consensus Protein-L-isoaspartate(D-aspartate) O-methyltransferase [Posttranslational modification, protein turnover, chaperones]

Probab=98.37  E-value=3.4e-06  Score=74.72  Aligned_cols=113  Identities=19%  Similarity=0.239  Sum_probs=82.6

Q ss_pred             CCCCCEEEEeccCCChhhHHHHHhh-cCCCcEEEEEeCChHHHHHHHHHHHhcC--------CCCCCeEEEEccccchhh
Q 042119          128 VVQPKKVAFVGSGPMPLTSIIMAKH-HLTSTHFDNFDIDEAANDVARSIVASDA--------EFEGRMKFLTRDIMEVKE  198 (286)
Q Consensus       128 ~~~~~~VL~IG~G~lp~tai~lA~~-~~~g~~V~~iDid~~ai~~Ar~~~~~~g--------~l~~~i~f~~~D~~~~~~  198 (286)
                      ..++-+.|+||||++-+| -++|+- ..+|..++|||.-|+-++.+++.+++.-        .-..+..|++||....-.
T Consensus        80 L~pG~s~LdvGsGSGYLt-~~~~~mvg~~g~~~~GIEh~~eLVe~Sk~nl~k~i~~~e~~~~~~~~~l~ivvGDgr~g~~  158 (237)
T KOG1661|consen   80 LQPGASFLDVGSGSGYLT-ACFARMVGATGGNVHGIEHIPELVEYSKKNLDKDITTSESSSKLKRGELSIVVGDGRKGYA  158 (237)
T ss_pred             hccCcceeecCCCccHHH-HHHHHHhcCCCccccchhhhHHHHHHHHHHHHhhccCchhhhhhccCceEEEeCCccccCC
Confidence            589999999999975555 456642 2356666999999999999999987643        113578999999987766


Q ss_pred             cCCCcceeehhhhccCChhHHHHHHHHHHhhccCCcEEEEee-cCcceeee
Q 042119          199 QLGEYDCIFLAALVGMSKEEKLTILGHIRKYMKDGGILLVRS-AKGARAFL  248 (286)
Q Consensus       199 ~l~~fD~V~~aalvg~~~~~k~~vl~~l~~~l~pgg~lv~r~-~~g~r~~l  248 (286)
                      +-..||.|++-|-+.       ++-+++...|+|||.+++-- ..+..+.+
T Consensus       159 e~a~YDaIhvGAaa~-------~~pq~l~dqL~~gGrllip~~~~~~~q~~  202 (237)
T KOG1661|consen  159 EQAPYDAIHVGAAAS-------ELPQELLDQLKPGGRLLIPVGQDGGTQYL  202 (237)
T ss_pred             ccCCcceEEEccCcc-------ccHHHHHHhhccCCeEEEeecccCceeEE
Confidence            667899999876441       34556777788988877754 44555543

>PRK00274 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Reviewed

Probab=98.36  E-value=1.7e-06  Score=79.61  Aligned_cols=65  Identities=17%  Similarity=0.237  Sum_probs=51.1

Q ss_pred             hcCCCCCCEEEEeccCCChhhHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEccccchhh
Q 042119          125 ENGVVQPKKVAFVGSGPMPLTSIIMAKHHLTSTHFDNFDIDEAANDVARSIVASDAEFEGRMKFLTRDIMEVKE  198 (286)
Q Consensus       125 ~~~~~~~~~VL~IG~G~lp~tai~lA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~g~l~~~i~f~~~D~~~~~~  198 (286)
                      .....++.+|||||||++.+| ..+++   .+.+|+++|+|+++++.+++.+..     ++++++++|+.++..
T Consensus        37 ~l~~~~~~~VLEiG~G~G~lt-~~L~~---~~~~v~avE~d~~~~~~~~~~~~~-----~~v~~i~~D~~~~~~  101 (272)
T PRK00274         37 AAGPQPGDNVLEIGPGLGALT-EPLLE---RAAKVTAVEIDRDLAPILAETFAE-----DNLTIIEGDALKVDL  101 (272)
T ss_pred             hcCCCCcCeEEEeCCCccHHH-HHHHH---hCCcEEEEECCHHHHHHHHHhhcc-----CceEEEEChhhcCCH
Confidence            345678899999999985555 56666   245999999999999999986532     579999999987643

>PF04816 DUF633: Family of unknown function (DUF633) ; InterPro: IPR006901 This is a family of uncharacterised bacterial proteins

Probab=98.35  E-value=5.4e-06  Score=73.63  Aligned_cols=111  Identities=23%  Similarity=0.262  Sum_probs=75.9

Q ss_pred             EEEeccCCChhhHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEccccchhhcCCCcceeehhhhcc
Q 042119          134 VAFVGSGPMPLTSIIMAKHHLTSTHFDNFDIDEAANDVARSIVASDAEFEGRMKFLTRDIMEVKEQLGEYDCIFLAALVG  213 (286)
Q Consensus       134 VL~IG~G~lp~tai~lA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~g~l~~~i~f~~~D~~~~~~~l~~fD~V~~aalvg  213 (286)
                      |+||||-. |+-++.|.++ ..-.++++.|+++.-++.|++.+++.| +.++|++..+|..+...+-...|.|++|.   
T Consensus         1 vaDIGtDH-gyLpi~L~~~-~~~~~~ia~DI~~gpL~~A~~~i~~~~-l~~~i~~rlgdGL~~l~~~e~~d~ivIAG---   74 (205)
T PF04816_consen    1 VADIGTDH-GYLPIYLLKN-GKAPKAIAVDINPGPLEKAKENIAKYG-LEDRIEVRLGDGLEVLKPGEDVDTIVIAG---   74 (205)
T ss_dssp             EEEET-ST-THHHHHHHHT-TSEEEEEEEESSHHHHHHHHHHHHHTT--TTTEEEEE-SGGGG--GGG---EEEEEE---
T ss_pred             Cceeccch-hHHHHHHHhc-CCCCEEEEEeCCHHHHHHHHHHHHHcC-CcccEEEEECCcccccCCCCCCCEEEEec---
Confidence            78999996 7777888872 445689999999999999999999999 89999999999977554433489998873   


Q ss_pred             CChhHHHHHHHHHHhhccCCcEEEEee---cCcceeeecc
Q 042119          214 MSKEEKLTILGHIRKYMKDGGILLVRS---AKGARAFLYP  250 (286)
Q Consensus       214 ~~~~~k~~vl~~l~~~l~pgg~lv~r~---~~g~r~~lyp  250 (286)
                      |--.--.++|+.....++....+|+--   ..-+|.+|+-
T Consensus        75 MGG~lI~~ILe~~~~~~~~~~~lILqP~~~~~~LR~~L~~  114 (205)
T PF04816_consen   75 MGGELIIEILEAGPEKLSSAKRLILQPNTHAYELRRWLYE  114 (205)
T ss_dssp             E-HHHHHHHHHHTGGGGTT--EEEEEESS-HHHHHHHHHH
T ss_pred             CCHHHHHHHHHhhHHHhccCCeEEEeCCCChHHHHHHHHH
Confidence            333556678888877776655666653   2335555543

; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity; PDB: 3LEC_A 3KU1_G 3KR9_A 3GNL_B.

>TIGR00755 ksgA dimethyladenosine transferase

Probab=98.35  E-value=5.5e-06  Score=75.31  Aligned_cols=73  Identities=19%  Similarity=0.334  Sum_probs=55.1

Q ss_pred             HHHhcCCCCCCEEEEeccCCChhhHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEccccchhhcCC
Q 042119          122 ILSENGVVQPKKVAFVGSGPMPLTSIIMAKHHLTSTHFDNFDIDEAANDVARSIVASDAEFEGRMKFLTRDIMEVKEQLG  201 (286)
Q Consensus       122 ~l~~~~~~~~~~VL~IG~G~lp~tai~lA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~g~l~~~i~f~~~D~~~~~~~l~  201 (286)
                      .+......++++|||||||++.+| ..+++   .+.+|+++|+|+++++.+++.+..    ..+++++++|+.+.+.+  
T Consensus        21 i~~~~~~~~~~~VLEiG~G~G~lt-~~L~~---~~~~v~~iE~d~~~~~~l~~~~~~----~~~v~v~~~D~~~~~~~--   90 (253)
T TIGR00755        21 IVEAANVLEGDVVLEIGPGLGALT-EPLLK---RAKKVTAIEIDPRLAEILRKLLSL----YERLEVIEGDALKVDLP--   90 (253)
T ss_pred             HHHhcCCCCcCEEEEeCCCCCHHH-HHHHH---hCCcEEEEECCHHHHHHHHHHhCc----CCcEEEEECchhcCChh--
Confidence            333445678899999999986665 45555   335799999999999999987643    25899999999776543  


Q ss_pred             Ccc
Q 042119          202 EYD  204 (286)
Q Consensus       202 ~fD  204 (286)
                      .||
T Consensus        91 ~~d   93 (253)
T TIGR00755        91 DFP   93 (253)
T ss_pred             HcC
Confidence            466

Alternate name: S-adenosylmethionine--6-N',N'-adenosyl (rRNA) dimethyltransferase

>KOG1541 consensus Predicted protein carboxyl methylase [General function prediction only]

Probab=98.34  E-value=3.7e-06  Score=75.13  Aligned_cols=101  Identities=15%  Similarity=0.261  Sum_probs=71.9

Q ss_pred             CCCCEEEEeccCCChhhHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEccc-cchhhcCCCcceee
Q 042119          129 VQPKKVAFVGSGPMPLTSIIMAKHHLTSTHFDNFDIDEAANDVARSIVASDAEFEGRMKFLTRDI-MEVKEQLGEYDCIF  207 (286)
Q Consensus       129 ~~~~~VL~IG~G~lp~tai~lA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~g~l~~~i~f~~~D~-~~~~~~l~~fD~V~  207 (286)
                      ..+.-|||||||+ |+++-.+..   +|...+|+||||.|++.|.+. .-.|      .++.+|. .-+++..+.||-|+
T Consensus        49 ~~~~~iLDIGCGs-GLSg~vL~~---~Gh~wiGvDiSpsML~~a~~~-e~eg------dlil~DMG~GlpfrpGtFDg~I  117 (270)
T KOG1541|consen   49 PKSGLILDIGCGS-GLSGSVLSD---SGHQWIGVDISPSMLEQAVER-ELEG------DLILCDMGEGLPFRPGTFDGVI  117 (270)
T ss_pred             CCCcEEEEeccCC-Ccchheecc---CCceEEeecCCHHHHHHHHHh-hhhc------CeeeeecCCCCCCCCCccceEE
Confidence            3578999999995 899998887   899999999999999999962 1124      2444443 23555556799775


Q ss_pred             hhhhccC----------ChhHHHHHHHHHHhhccCCcEEEEee
Q 042119          208 LAALVGM----------SKEEKLTILGHIRKYMKDGGILLVRS  240 (286)
Q Consensus       208 ~aalvg~----------~~~~k~~vl~~l~~~l~pgg~lv~r~  240 (286)
                      .-+.|-|          +...-..++..+...|++|++-++..
T Consensus       118 SISAvQWLcnA~~s~~~P~~Rl~~FF~tLy~~l~rg~raV~Qf  160 (270)
T KOG1541|consen  118 SISAVQWLCNADKSLHVPKKRLLRFFGTLYSCLKRGARAVLQF  160 (270)
T ss_pred             EeeeeeeecccCccccChHHHHHHHhhhhhhhhccCceeEEEe
Confidence            3222211          22223567888999999999988864

>PF10672 Methyltrans_SAM: S-adenosylmethionine-dependent methyltransferase; InterPro: IPR019614 Members of this entry are S-adenosylmethionine-dependent methyltransferases from gamma-proteobacterial species

Probab=98.34  E-value=3.5e-06  Score=78.38  Aligned_cols=107  Identities=21%  Similarity=0.288  Sum_probs=78.5

Q ss_pred             CCCCEEEEeccCCChhhHHHHHhhcCCCc-EEEEEeCChHHHHHHHHHHHhcCCCC-CCeEEEEccccchhhc---CCCc
Q 042119          129 VQPKKVAFVGSGPMPLTSIIMAKHHLTST-HFDNFDIDEAANDVARSIVASDAEFE-GRMKFLTRDIMEVKEQ---LGEY  203 (286)
Q Consensus       129 ~~~~~VL~IG~G~lp~tai~lA~~~~~g~-~V~~iDid~~ai~~Ar~~~~~~g~l~-~~i~f~~~D~~~~~~~---l~~f  203 (286)
                      ..+++||++=|=++|+|... |+   .|+ +|++||.|..++++|+++++..| +. ++++|+++|+.+....   -+.|
T Consensus       122 ~~gkrvLnlFsYTGgfsv~A-a~---gGA~~v~~VD~S~~al~~a~~N~~lNg-~~~~~~~~~~~Dvf~~l~~~~~~~~f  196 (286)
T PF10672_consen  122 AKGKRVLNLFSYTGGFSVAA-AA---GGAKEVVSVDSSKRALEWAKENAALNG-LDLDRHRFIQGDVFKFLKRLKKGGRF  196 (286)
T ss_dssp             CTTCEEEEET-TTTHHHHHH-HH---TTESEEEEEES-HHHHHHHHHHHHHTT--CCTCEEEEES-HHHHHHHHHHTT-E
T ss_pred             cCCCceEEecCCCCHHHHHH-HH---CCCCEEEEEeCCHHHHHHHHHHHHHcC-CCccceEEEecCHHHHHHHHhcCCCC
Confidence            46899999999877777543 33   566 79999999999999999999888 54 7899999999875432   2479


Q ss_pred             ceeehhh--hc-cC--ChhHHHHHHHHHHhhccCCcEEEEee
Q 042119          204 DCIFLAA--LV-GM--SKEEKLTILGHIRKYMKDGGILLVRS  240 (286)
Q Consensus       204 D~V~~aa--lv-g~--~~~~k~~vl~~l~~~l~pgg~lv~r~  240 (286)
                      |+|+++-  +. +-  -..++.+++..+.+.++|||.|+.-+
T Consensus       197 D~IIlDPPsF~k~~~~~~~~y~~L~~~a~~ll~~gG~l~~~s  238 (286)
T PF10672_consen  197 DLIILDPPSFAKSKFDLERDYKKLLRRAMKLLKPGGLLLTCS  238 (286)
T ss_dssp             EEEEE--SSEESSTCEHHHHHHHHHHHHHHTEEEEEEEEEEE
T ss_pred             CEEEECCCCCCCCHHHHHHHHHHHHHHHHHhcCCCCEEEEEc
Confidence            9999873  22 11  12456789999999999999988765

The diversity in the roles of methylation is matched by the almost bewildering number of methyltransferase enzymes that catalyse the methylation reaction. Although several classes of methyltransferase enzymes are known, the great majority of methylation reactions are catalysed by the S-adenosylmethionine-dependent methyltransferases. SAM (S-adenosylmethionine, also known as AdoMet) is well known as the methyl donor for the majority of methyltransferases that modify DNA, RNA, histones and other proteins, dictating replicational, transcriptional and translational fidelity, mismatch repair, chromatin modelling, epigenetic modifications and imprinting [].; GO: 0008168 methyltransferase activity; PDB: 2IGT_B 1WXX_A 1WXW_D 2CWW_B 2AS0_B 3V8V_B 3V97_A 3C0K_A 2B78_A 3LDF_A.

>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]

Probab=98.33  E-value=2.8e-07  Score=82.61  Aligned_cols=145  Identities=17%  Similarity=0.203  Sum_probs=96.7

Q ss_pred             hcCCCCCCEEEEeccCCChhhHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEccccchhhcC--CC
Q 042119          125 ENGVVQPKKVAFVGSGPMPLTSIIMAKHHLTSTHFDNFDIDEAANDVARSIVASDAEFEGRMKFLTRDIMEVKEQL--GE  202 (286)
Q Consensus       125 ~~~~~~~~~VL~IG~G~lp~tai~lA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~g~l~~~i~f~~~D~~~~~~~l--~~  202 (286)
                      +....+=+++|++|||+ |++...+-.   .-.+.+|||||..|++.|.+.    |+. +  +..++|+..+..+.  ..
T Consensus       120 ~~~~g~F~~~lDLGCGT-GL~G~~lR~---~a~~ltGvDiS~nMl~kA~eK----g~Y-D--~L~~Aea~~Fl~~~~~er  188 (287)
T COG4976         120 KADLGPFRRMLDLGCGT-GLTGEALRD---MADRLTGVDISENMLAKAHEK----GLY-D--TLYVAEAVLFLEDLTQER  188 (287)
T ss_pred             hccCCccceeeecccCc-CcccHhHHH---HHhhccCCchhHHHHHHHHhc----cch-H--HHHHHHHHHHhhhccCCc
Confidence            34445568999999995 888887765   557899999999999999874    211 1  34456665555423  46


Q ss_pred             cceeehhhhccCChhHHHHHHHHHHhhccCCcEEEEeec----CcceeeecccC---Ccc-------cccCcEEEEEecC
Q 042119          203 YDCIFLAALVGMSKEEKLTILGHIRKYMKDGGILLVRSA----KGARAFLYPVV---VEH-------DLLDFEVLSAVHP  268 (286)
Q Consensus       203 fD~V~~aalvg~~~~~k~~vl~~l~~~l~pgg~lv~r~~----~g~r~~lyp~v---~~~-------~l~gf~~~~~~~P  268 (286)
                      ||+|. ++-|-+....-..++..+...|+|||.+.....    +| +-.+-|..   +.+       +-.||+++...+-
T Consensus       189 ~DLi~-AaDVl~YlG~Le~~~~~aa~~L~~gGlfaFSvE~l~~~~-~f~l~ps~RyAH~~~YVr~~l~~~Gl~~i~~~~t  266 (287)
T COG4976         189 FDLIV-AADVLPYLGALEGLFAGAAGLLAPGGLFAFSVETLPDDG-GFVLGPSQRYAHSESYVRALLAASGLEVIAIEDT  266 (287)
T ss_pred             ccchh-hhhHHHhhcchhhHHHHHHHhcCCCceEEEEecccCCCC-CeecchhhhhccchHHHHHHHHhcCceEEEeecc
Confidence            99986 344444456778899999999999999999862    32 12333321   111       1269998754431


Q ss_pred             ------cccceeeeEEEeec
Q 042119          269 ------NDDVINSVVLVRNS  282 (286)
Q Consensus       269 ------~~~vinsvi~~r~~  282 (286)
                            ..+|---.+++||+
T Consensus       267 tiR~d~g~pv~G~L~iark~  286 (287)
T COG4976         267 TIRRDAGEPVPGILVIARKK  286 (287)
T ss_pred             cchhhcCCCCCCceEEEecC
Confidence                  22344457888885

>PF01170 UPF0020: Putative RNA methylase family UPF0020; InterPro: IPR000241 This domain is probably a methylase

Probab=98.33  E-value=5.2e-06  Score=71.96  Aligned_cols=121  Identities=19%  Similarity=0.179  Sum_probs=76.6

Q ss_pred             HHhcCCCCCCEEEEeccCCChh--hHHHHHhhcCC-----CcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEccccc
Q 042119          123 LSENGVVQPKKVAFVGSGPMPL--TSIIMAKHHLT-----STHFDNFDIDEAANDVARSIVASDAEFEGRMKFLTRDIME  195 (286)
Q Consensus       123 l~~~~~~~~~~VL~IG~G~lp~--tai~lA~~~~~-----g~~V~~iDid~~ai~~Ar~~~~~~g~l~~~i~f~~~D~~~  195 (286)
                      +..++..++..|+|--||.+.+  -+..++....+     ..++.|+|+|+++++.|+++++..| +...|.|..+|+.+
T Consensus        21 l~la~~~~~~~vlDP~CGsGtiliEaa~~~~~~~~~~~~~~~~~~g~Di~~~~v~~a~~N~~~ag-~~~~i~~~~~D~~~   99 (179)
T PF01170_consen   21 LNLAGWRPGDVVLDPFCGSGTILIEAALMGANIPPLNDINELKIIGSDIDPKAVRGARENLKAAG-VEDYIDFIQWDARE   99 (179)
T ss_dssp             HHHTT--TTS-EEETT-TTSHHHHHHHHHHTTTSTTTH-CH--EEEEESSHHHHHHHHHHHHHTT--CGGEEEEE--GGG
T ss_pred             HHHhCCCCCCEEeecCCCCCHHHHHHHHHhhCcccccccccccEEecCCCHHHHHHHHHHHHhcc-cCCceEEEecchhh
Confidence            3344567889999987775332  23333321110     1238999999999999999999999 78899999999999


Q ss_pred             hhhcCCCcceeehhhhccCC-------hhHHHHHHHHHHhhccCCcEEEEeecCcc
Q 042119          196 VKEQLGEYDCIFLAALVGMS-------KEEKLTILGHIRKYMKDGGILLVRSAKGA  244 (286)
Q Consensus       196 ~~~~l~~fD~V~~aalvg~~-------~~~k~~vl~~l~~~l~pgg~lv~r~~~g~  244 (286)
                      ++...+.+|+|+.+---|.-       ..-+.++++++.+++++..++++.....+
T Consensus       100 l~~~~~~~d~IvtnPPyG~r~~~~~~~~~ly~~~~~~~~~~l~~~~v~l~~~~~~~  155 (179)
T PF01170_consen  100 LPLPDGSVDAIVTNPPYGRRLGSKKDLEKLYRQFLRELKRVLKPRAVFLTTSNREL  155 (179)
T ss_dssp             GGGTTSBSCEEEEE--STTSHCHHHHHHHHHHHHHHHHHCHSTTCEEEEEESCCCH
T ss_pred             cccccCCCCEEEECcchhhhccCHHHHHHHHHHHHHHHHHHCCCCEEEEEECCHHH
Confidence            88544579999876432221       12245678888999999666666654443

It is associated with the THUMP domain that also occurs with RNA modification domains [].; PDB: 3LDU_A 3LDG_A 3K0B_A 3V8V_B 3V97_A 3TLJ_A 3TM5_B 3TM4_A 3TMA_A.

>PF07091 FmrO: Ribosomal RNA methyltransferase (FmrO); PDB: 3LCU_A 3LCV_B 3FRH_A 3FRI_A 3B89_A 3FZG_A

Probab=98.32  E-value=2.1e-06  Score=78.00  Aligned_cols=151  Identities=15%  Similarity=0.105  Sum_probs=94.1

Q ss_pred             hhhHHHHHHHHHHhhcCCcccccccCchhHHHHHHHHHHHHHHHhHhhhH--HHHHHhcCCCCcccccccCcCccchhhh
Q 042119           38 SKQVNSIFSRLVKLCTIPSSIDITALPQEVQKMRESLIVLCGRAEGLLEL--EFATFLTKIPQPLNNLSLFPYYGNYVKL  115 (286)
Q Consensus        38 ~~~vn~lf~~Lv~~c~~~~~~~~~~~~~~~~~l~~~l~~l~~~~e~~lE~--~~A~~l~~~~~p~~~L~~fpy~~ny~~l  115 (286)
                      -+.+++...+|-..|---.+     ..+..+++..++++  +.+.+--|.  .|.+.+++...+.     -.+++++..+
T Consensus        28 k~a~k~~k~~LH~i~gay~~-----~~p~~~~ll~~l~~--a~~~~D~e~~~~~~r~lL~~HaST-----~ERl~~Ld~f   95 (251)
T PF07091_consen   28 KEAVKATKRRLHQIFGAYLE-----GRPDYDALLRKLQE--ALDVGDPEAIRAWCRRLLAGHAST-----RERLPNLDEF   95 (251)
T ss_dssp             HHHHHHHHHHHHCCTCCCSS-----S---HHHHHHHHHH--HHCTTHHHHHHHHHHHHHHTSHHH-----HCCGGGHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHhc-----CCCCHHHHHHHHHh--ccCcCCHHHHHHHHHHHHhhccch-----hhhhhhHHHH
Confidence            34578888888777754321     12334455556655  222222222  3334454443332     2556677777


Q ss_pred             hHHHHHHHHhcCCCCCCEEEEeccCCChhhHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEccccc
Q 042119          116 SKLEYTILSENGVVQPKKVAFVGSGPMPLTSIIMAKHHLTSTHFDNFDIDEAANDVARSIVASDAEFEGRMKFLTRDIME  195 (286)
Q Consensus       116 ~~~E~~~l~~~~~~~~~~VL~IG~G~lp~tai~lA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~g~l~~~i~f~~~D~~~  195 (286)
                      ....++     ...++.+|+|||||.-|++..++..  .+++.++|+|||..+++..++.+..+|   -+.++...|...
T Consensus        96 Y~~if~-----~~~~p~sVlDigCGlNPlalp~~~~--~~~a~Y~a~DID~~~ve~l~~~l~~l~---~~~~~~v~Dl~~  165 (251)
T PF07091_consen   96 YDEIFG-----RIPPPDSVLDIGCGLNPLALPWMPE--APGATYIAYDIDSQLVEFLNAFLAVLG---VPHDARVRDLLS  165 (251)
T ss_dssp             HHHHCC-----CS---SEEEEET-TTCHHHHHTTTS--STT-EEEEEESBHHHHHHHHHHHHHTT----CEEEEEE-TTT
T ss_pred             HHHHHh-----cCCCCchhhhhhccCCceehhhccc--CCCcEEEEEeCCHHHHHHHHHHHHhhC---CCcceeEeeeec
Confidence            776654     3366999999999999999999986  589999999999999999999999988   367888888854


Q ss_pred             hhhcCCCcceeehhhh
Q 042119          196 VKEQLGEYDCIFLAAL  211 (286)
Q Consensus       196 ~~~~l~~fD~V~~aal  211 (286)
                      -+.. ...|+.++-=+
T Consensus       166 ~~~~-~~~DlaLllK~  180 (251)
T PF07091_consen  166 DPPK-EPADLALLLKT  180 (251)
T ss_dssp             SHTT-SEESEEEEET-
T ss_pred             cCCC-CCcchhhHHHH
Confidence            3221 24788765443

>COG2521 Predicted archaeal methyltransferase [General function prediction only]

Probab=98.31  E-value=6.7e-07  Score=80.37  Aligned_cols=136  Identities=24%  Similarity=0.259  Sum_probs=94.4

Q ss_pred             CCCCCCEEEEeccCCChhhHHHHHhhcCCCc-EEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEccccchhhcCC--Cc
Q 042119          127 GVVQPKKVAFVGSGPMPLTSIIMAKHHLTST-HFDNFDIDEAANDVARSIVASDAEFEGRMKFLTRDIMEVKEQLG--EY  203 (286)
Q Consensus       127 ~~~~~~~VL~IG~G~lp~tai~lA~~~~~g~-~V~~iDid~~ai~~Ar~~~~~~g~l~~~i~f~~~D~~~~~~~l~--~f  203 (286)
                      .++.+.+|||.-.| +|+||+.-++   .|+ +|..|+.||..+++|.-+==+.++.+..|+++.||+.++..++.  +|
T Consensus       131 ~~~~G~rVLDtC~G-LGYtAi~a~~---rGA~~VitvEkdp~VLeLa~lNPwSr~l~~~~i~iilGD~~e~V~~~~D~sf  206 (287)
T COG2521         131 KVKRGERVLDTCTG-LGYTAIEALE---RGAIHVITVEKDPNVLELAKLNPWSRELFEIAIKIILGDAYEVVKDFDDESF  206 (287)
T ss_pred             ccccCCEeeeeccC-ccHHHHHHHH---cCCcEEEEEeeCCCeEEeeccCCCCccccccccEEecccHHHHHhcCCcccc
Confidence            45679999999888 8999999888   788 99999999999998876532333234578999999999877664  69


Q ss_pred             ceeehhh----hccCChhH-HHHHHHHHHhhccCCcEEEEeecC-ccee-eecccCCcc-cc--cCcEEEEEecCc
Q 042119          204 DCIFLAA----LVGMSKEE-KLTILGHIRKYMKDGGILLVRSAK-GARA-FLYPVVVEH-DL--LDFEVLSAVHPN  269 (286)
Q Consensus       204 D~V~~aa----lvg~~~~~-k~~vl~~l~~~l~pgg~lv~r~~~-g~r~-~lyp~v~~~-~l--~gf~~~~~~~P~  269 (286)
                      |+|+-+-    +.|   +- -.++..+++|.|+|||.+.=-.++ |-|- -+.++-... .|  .||+++....-.
T Consensus       207 DaIiHDPPRfS~Ag---eLYseefY~El~RiLkrgGrlFHYvG~Pg~ryrG~d~~~gVa~RLr~vGF~~v~~~~~~  279 (287)
T COG2521         207 DAIIHDPPRFSLAG---ELYSEEFYRELYRILKRGGRLFHYVGNPGKRYRGLDLPKGVAERLRRVGFEVVKKVREA  279 (287)
T ss_pred             ceEeeCCCccchhh---hHhHHHHHHHHHHHcCcCCcEEEEeCCCCcccccCChhHHHHHHHHhcCceeeeeehhc
Confidence            9987542    112   22 257899999999999987654332 2111 111111111 12  499987666544

>TIGR00478 tly hemolysin TlyA family protein

Probab=98.29  E-value=3.4e-06  Score=76.06  Aligned_cols=90  Identities=18%  Similarity=0.217  Sum_probs=58.3

Q ss_pred             CCCCEEEEeccCCChhhHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCe-EEEEcccc-----chhhcCCC
Q 042119          129 VQPKKVAFVGSGPMPLTSIIMAKHHLTSTHFDNFDIDEAANDVARSIVASDAEFEGRM-KFLTRDIM-----EVKEQLGE  202 (286)
Q Consensus       129 ~~~~~VL~IG~G~lp~tai~lA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~g~l~~~i-~f~~~D~~-----~~~~~l~~  202 (286)
                      ..+++||||||||+++| .++++  ....+|+++|+++.++..  ++ +..    .++ .+...|+.     ++..++..
T Consensus        74 ~~~~~vlDiG~gtG~~t-~~l~~--~ga~~v~avD~~~~~l~~--~l-~~~----~~v~~~~~~ni~~~~~~~~~~d~~~  143 (228)
T TIGR00478        74 VKNKIVLDVGSSTGGFT-DCALQ--KGAKEVYGVDVGYNQLAE--KL-RQD----ERVKVLERTNIRYVTPADIFPDFAT  143 (228)
T ss_pred             CCCCEEEEcccCCCHHH-HHHHH--cCCCEEEEEeCCHHHHHH--HH-hcC----CCeeEeecCCcccCCHhHcCCCcee
Confidence            57789999999997776 45666  134689999999988766  21 111    122 23333333     23334446


Q ss_pred             cceeehhhhccCChhHHHHHHHHHHhhccCCcEEEE
Q 042119          203 YDCIFLAALVGMSKEEKLTILGHIRKYMKDGGILLV  238 (286)
Q Consensus       203 fD~V~~aalvg~~~~~k~~vl~~l~~~l~pgg~lv~  238 (286)
                      ||++|.+..         .++..+.+.|+| |.+++
T Consensus       144 ~DvsfiS~~---------~~l~~i~~~l~~-~~~~~  169 (228)
T TIGR00478       144 FDVSFISLI---------SILPELDLLLNP-NDLTL  169 (228)
T ss_pred             eeEEEeehH---------hHHHHHHHHhCc-CeEEE
Confidence            888886532         268899999999 65544

Hemolysins are exotoxins that attack blood cell membranes and cause cell rupture, often by forming a pore in the membrane. At least two members of this protein family have been characterized indirectly as pore-forming hemolysins, one from the spirochete Serpula (Treponema) hyodysenteriae and one from Mycobacterium tuberculosis. However, homology domains in this protein suggest methyltransferase activity (pfam01728) and RNA-binding activity (pfam01479).

>PRK00050 16S rRNA m(4)C1402 methyltranserfase; Provisional

Probab=98.29  E-value=2.5e-06  Score=79.70  Aligned_cols=81  Identities=20%  Similarity=0.166  Sum_probs=63.7

Q ss_pred             CCCCCCEEEEeccCCChhhHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEccccchhhcC----CC
Q 042119          127 GVVQPKKVAFVGSGPMPLTSIIMAKHHLTSTHFDNFDIDEAANDVARSIVASDAEFEGRMKFLTRDIMEVKEQL----GE  202 (286)
Q Consensus       127 ~~~~~~~VL~IG~G~lp~tai~lA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~g~l~~~i~f~~~D~~~~~~~l----~~  202 (286)
                      .+.++..++|.+||.+|.|...+.. ..++++|+|+|+||+|++.|++.+.. .   ++++++++|..++...+    ..
T Consensus        16 ~~~pg~~vlD~TlG~GGhS~~il~~-~~~~g~VigiD~D~~al~~ak~~L~~-~---~ri~~i~~~f~~l~~~l~~~~~~   90 (296)
T PRK00050         16 AIKPDGIYVDGTFGGGGHSRAILER-LGPKGRLIAIDRDPDAIAAAKDRLKP-F---GRFTLVHGNFSNLKEVLAEGLGK   90 (296)
T ss_pred             CCCCCCEEEEeCcCChHHHHHHHHh-CCCCCEEEEEcCCHHHHHHHHHhhcc-C---CcEEEEeCCHHHHHHHHHcCCCc
Confidence            4577889999999987777655543 23468999999999999999998765 3   68999999998765433    26


Q ss_pred             cceeehhhhc
Q 042119          203 YDCIFLAALV  212 (286)
Q Consensus       203 fD~V~~aalv  212 (286)
                      +|.|+++-.+
T Consensus        91 vDgIl~DLGv  100 (296)
T PRK00050         91 VDGILLDLGV  100 (296)
T ss_pred             cCEEEECCCc
Confidence            9999887655

>PRK09424 pntA NAD(P) transhydrogenase subunit alpha; Provisional

Probab=98.27  E-value=4e-06  Score=83.68  Aligned_cols=102  Identities=26%  Similarity=0.298  Sum_probs=73.7

Q ss_pred             CCCCCEEEEeccCCChhhHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEcccc-----------ch
Q 042119          128 VVQPKKVAFVGSGPMPLTSIIMAKHHLTSTHFDNFDIDEAANDVARSIVASDAEFEGRMKFLTRDIM-----------EV  196 (286)
Q Consensus       128 ~~~~~~VL~IG~G~lp~tai~lA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~g~l~~~i~f~~~D~~-----------~~  196 (286)
                      ..+|.+|+.+|+|+.|+.++..|+.  .|++|+++|.+++..+.+++    +|.     +|.+-|..           +.
T Consensus       162 ~~pg~kVlViGaG~iGL~Ai~~Ak~--lGA~V~a~D~~~~rle~aes----lGA-----~~v~i~~~e~~~~~~gya~~~  230 (509)
T PRK09424        162 KVPPAKVLVIGAGVAGLAAIGAAGS--LGAIVRAFDTRPEVAEQVES----MGA-----EFLELDFEEEGGSGDGYAKVM  230 (509)
T ss_pred             CcCCCEEEEECCcHHHHHHHHHHHH--CCCEEEEEeCCHHHHHHHHH----cCC-----eEEEeccccccccccchhhhc
Confidence            4689999999999999999999994  78999999999999988887    351     22211110           01


Q ss_pred             ------------hhcCCCcceeehhhhccCChhHHHHHHHHHHhhccCCcEEEEeec
Q 042119          197 ------------KEQLGEYDCIFLAALVGMSKEEKLTILGHIRKYMKDGGILLVRSA  241 (286)
Q Consensus       197 ------------~~~l~~fD~V~~aalvg~~~~~k~~vl~~l~~~l~pgg~lv~r~~  241 (286)
                                  ....+++|+|+.++.+...+.+ .-+.++..+.|||||+++.-..
T Consensus       231 s~~~~~~~~~~~~~~~~gaDVVIetag~pg~~aP-~lit~~~v~~mkpGgvIVdvg~  286 (509)
T PRK09424        231 SEEFIKAEMALFAEQAKEVDIIITTALIPGKPAP-KLITAEMVASMKPGSVIVDLAA  286 (509)
T ss_pred             chhHHHHHHHHHHhccCCCCEEEECCCCCcccCc-chHHHHHHHhcCCCCEEEEEcc
Confidence                        1112469999998876221122 2345999999999999988754

>COG0144 Sun tRNA and rRNA cytosine-C5-methylases [Translation, ribosomal structure and biogenesis]

Probab=98.25  E-value=1.6e-05  Score=76.22  Aligned_cols=112  Identities=18%  Similarity=0.195  Sum_probs=85.4

Q ss_pred             CCCCCCEEEEeccCCChhhHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEccccchhhcCC---Cc
Q 042119          127 GVVQPKKVAFVGSGPMPLTSIIMAKHHLTSTHFDNFDIDEAANDVARSIVASDAEFEGRMKFLTRDIMEVKEQLG---EY  203 (286)
Q Consensus       127 ~~~~~~~VL~IG~G~lp~tai~lA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~g~l~~~i~f~~~D~~~~~~~l~---~f  203 (286)
                      .+.++.+|||.-++|+|=|+...+.-...|..|+++|+|+..+..-+++++++| + .++...+.|....+....   .|
T Consensus       153 ~p~pge~VlD~cAAPGGKTthla~~~~~~~~iV~A~D~~~~Rl~~l~~nl~RlG-~-~nv~~~~~d~~~~~~~~~~~~~f  230 (355)
T COG0144         153 DPKPGERVLDLCAAPGGKTTHLAELMENEGAIVVAVDVSPKRLKRLRENLKRLG-V-RNVIVVNKDARRLAELLPGGEKF  230 (355)
T ss_pred             CCCCcCEEEEECCCCCCHHHHHHHhcCCCCceEEEEcCCHHHHHHHHHHHHHcC-C-CceEEEecccccccccccccCcC
Confidence            468999999999999998876554411235778999999999999999999999 4 458888888865544332   39


Q ss_pred             ceeehhhh---ccC---Ch---------------hHHHHHHHHHHhhccCCcEEEEee
Q 042119          204 DCIFLAAL---VGM---SK---------------EEKLTILGHIRKYMKDGGILLVRS  240 (286)
Q Consensus       204 D~V~~aal---vg~---~~---------------~~k~~vl~~l~~~l~pgg~lv~r~  240 (286)
                      |.|++++-   .|+   ++               .--.++|++..+.+||||+|++.+
T Consensus       231 D~iLlDaPCSg~G~irr~Pd~~~~~~~~~i~~l~~lQ~~iL~~a~~~lk~GG~LVYST  288 (355)
T COG0144         231 DRILLDAPCSGTGVIRRDPDVKWRRTPEDIAELAKLQKEILAAALKLLKPGGVLVYST  288 (355)
T ss_pred             cEEEECCCCCCCcccccCccccccCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEc
Confidence            99998761   121   11               113479999999999999999975

>PHA03412 putative methyltransferase; Provisional

Probab=98.24  E-value=7.6e-06  Score=74.11  Aligned_cols=99  Identities=10%  Similarity=0.125  Sum_probs=67.4

Q ss_pred             CCCEEEEeccCCChhhHHHHHhhc--CCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEccccchhhcCCCcceee
Q 042119          130 QPKKVAFVGSGPMPLTSIIMAKHH--LTSTHFDNFDIDEAANDVARSIVASDAEFEGRMKFLTRDIMEVKEQLGEYDCIF  207 (286)
Q Consensus       130 ~~~~VL~IG~G~lp~tai~lA~~~--~~g~~V~~iDid~~ai~~Ar~~~~~~g~l~~~i~f~~~D~~~~~~~l~~fD~V~  207 (286)
                      .+.+|||+|||+ |.-++.++++.  .+..+|+++|+|+.|++.|++++       .++.++++|+.+... .+.||+|+
T Consensus        49 ~~grVLDlG~GS-G~Lalala~~~~~~~~~~V~aVEID~~Al~~Ar~n~-------~~~~~~~~D~~~~~~-~~~FDlII  119 (241)
T PHA03412         49 TSGSVVDLCAGI-GGLSFAMVHMMMYAKPREIVCVELNHTYYKLGKRIV-------PEATWINADALTTEF-DTLFDMAI  119 (241)
T ss_pred             CCCEEEEccChH-HHHHHHHHHhcccCCCcEEEEEECCHHHHHHHHhhc-------cCCEEEEcchhcccc-cCCccEEE
Confidence            367999999996 55566666521  14679999999999999999863       247899999976443 24799996


Q ss_pred             hhhh-c--cC--------ChhHHHHHHHHHHhhccCCcEEEE
Q 042119          208 LAAL-V--GM--------SKEEKLTILGHIRKYMKDGGILLV  238 (286)
Q Consensus       208 ~aal-v--g~--------~~~~k~~vl~~l~~~l~pgg~lv~  238 (286)
                      ..-- .  ..        ....-.++++...+.++||+. |+
T Consensus       120 sNPPY~~~~~~d~~ar~~g~~~~~~li~~A~~Ll~~G~~-IL  160 (241)
T PHA03412        120 SNPPFGKIKTSDFKGKYTGAEFEYKVIERASQIARQGTF-II  160 (241)
T ss_pred             ECCCCCCccccccCCcccccHHHHHHHHHHHHHcCCCEE-Ee
Confidence            4310 0  00        012234588888887776665 44

>KOG3420 consensus Predicted RNA methylase [Translation, ribosomal structure and biogenesis]

Probab=98.23  E-value=1.2e-06  Score=73.49  Aligned_cols=79  Identities=22%  Similarity=0.295  Sum_probs=62.2

Q ss_pred             cCCCCCCEEEEeccCCChhhHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEccccchhhcCCCcce
Q 042119          126 NGVVQPKKVAFVGSGPMPLTSIIMAKHHLTSTHFDNFDIDEAANDVARSIVASDAEFEGRMKFLTRDIMEVKEQLGEYDC  205 (286)
Q Consensus       126 ~~~~~~~~VL~IG~G~lp~tai~lA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~g~l~~~i~f~~~D~~~~~~~l~~fD~  205 (286)
                      ++.-.+++++++|||. |+-++..+-  +..-.|.|+||||+|++.+++++..+-   -++++.++|+.+.....+-||.
T Consensus        44 ygdiEgkkl~DLgcgc-GmLs~a~sm--~~~e~vlGfDIdpeALEIf~rNaeEfE---vqidlLqcdildle~~~g~fDt  117 (185)
T KOG3420|consen   44 YGDIEGKKLKDLGCGC-GMLSIAFSM--PKNESVLGFDIDPEALEIFTRNAEEFE---VQIDLLQCDILDLELKGGIFDT  117 (185)
T ss_pred             hccccCcchhhhcCch-hhhHHHhhc--CCCceEEeeecCHHHHHHHhhchHHhh---hhhheeeeeccchhccCCeEee
Confidence            3446789999999994 665544442  456679999999999999999999876   3679999999887666567998


Q ss_pred             eehhh
Q 042119          206 IFLAA  210 (286)
Q Consensus       206 V~~aa  210 (286)
                      ++..-
T Consensus       118 aviNp  122 (185)
T KOG3420|consen  118 AVINP  122 (185)
T ss_pred             EEecC
Confidence            76553

>KOG2904 consensus Predicted methyltransferase [General function prediction only]

Probab=98.21  E-value=7.5e-06  Score=75.24  Aligned_cols=125  Identities=14%  Similarity=0.190  Sum_probs=82.2

Q ss_pred             cchhhhhHHHHHHHHhcCCCCCCEEEEeccCCChhhHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEE
Q 042119          110 GNYVKLSKLEYTILSENGVVQPKKVAFVGSGPMPLTSIIMAKHHLTSTHFDNFDIDEAANDVARSIVASDAEFEGRMKFL  189 (286)
Q Consensus       110 ~ny~~l~~~E~~~l~~~~~~~~~~VL~IG~G~lp~tai~lA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~g~l~~~i~f~  189 (286)
                      +.|+..+..+.+   +..-..+..+|++|||.+.++.- +++ .++.++|++||.|+.|+.+|.+++.+++ +.+++..+
T Consensus       131 EE~V~~Vid~~~---~~~~~~~~~ildlgtGSGaIsls-ll~-~L~~~~v~AiD~S~~Ai~La~eN~qr~~-l~g~i~v~  204 (328)
T KOG2904|consen  131 EEWVEAVIDALN---NSEHSKHTHILDLGTGSGAISLS-LLH-GLPQCTVTAIDVSKAAIKLAKENAQRLK-LSGRIEVI  204 (328)
T ss_pred             HHHHHHHHHHHh---hhhhcccceEEEecCCccHHHHH-HHh-cCCCceEEEEeccHHHHHHHHHHHHHHh-hcCceEEE
Confidence            344444444444   33335667999999998666544 444 3789999999999999999999999999 78999888


Q ss_pred             ----Eccccchhh-cCCCcceeehh-----------------------hhccCC--hhHHHHHHHHHHhhccCCcEEEEe
Q 042119          190 ----TRDIMEVKE-QLGEYDCIFLA-----------------------ALVGMS--KEEKLTILGHIRKYMKDGGILLVR  239 (286)
Q Consensus       190 ----~~D~~~~~~-~l~~fD~V~~a-----------------------alvg~~--~~~k~~vl~~l~~~l~pgg~lv~r  239 (286)
                          ++|..+-.. .++.+|+++..                       |+.|..  ......++.-.-|.|+|||.+.+.
T Consensus       205 ~~~me~d~~~~~~l~~~~~dllvsNPPYI~~dD~~~l~~eV~~yEp~lALdGg~eG~~~~~~~~~~a~R~Lq~gg~~~le  284 (328)
T KOG2904|consen  205 HNIMESDASDEHPLLEGKIDLLVSNPPYIRKDDNRQLKPEVRLYEPKLALDGGLEGYDNLVHYWLLATRMLQPGGFEQLE  284 (328)
T ss_pred             ecccccccccccccccCceeEEecCCCcccccchhhcCchheecCchhhhccccchhHHHHHHHHhhHhhcccCCeEEEE
Confidence                555543221 22456665311                       122110  122345666677888999888776


Q ss_pred             e
Q 042119          240 S  240 (286)
Q Consensus       240 ~  240 (286)
                      .
T Consensus       285 ~  285 (328)
T KOG2904|consen  285 L  285 (328)
T ss_pred             e
Confidence            4

>PF08123 DOT1: Histone methylation protein DOT1 ; InterPro: IPR013110 The DOT1 domain regulates gene expression by methylating histone H3 []

Probab=98.20  E-value=7.1e-06  Score=72.84  Aligned_cols=113  Identities=16%  Similarity=0.227  Sum_probs=68.4

Q ss_pred             HHHhcCCCCCCEEEEeccCCChhhHHHHHhhcCCCcE-EEEEeCChHHHHHHHHHHH-------hcCCCCCCeEEEEccc
Q 042119          122 ILSENGVVQPKKVAFVGSGPMPLTSIIMAKHHLTSTH-FDNFDIDEAANDVARSIVA-------SDAEFEGRMKFLTRDI  193 (286)
Q Consensus       122 ~l~~~~~~~~~~VL~IG~G~lp~tai~lA~~~~~g~~-V~~iDid~~ai~~Ar~~~~-------~~g~l~~~i~f~~~D~  193 (286)
                      .+...++++++..+||||| .|-..+..|-  ..+++ +.||++.+...+.|++..+       ..|.-..++++..||.
T Consensus        34 il~~~~l~~~dvF~DlGSG-~G~~v~~aal--~~~~~~~~GIEi~~~~~~~a~~~~~~~~~~~~~~g~~~~~v~l~~gdf  110 (205)
T PF08123_consen   34 ILDELNLTPDDVFYDLGSG-VGNVVFQAAL--QTGCKKSVGIEILPELHDLAEELLEELKKRMKHYGKRPGKVELIHGDF  110 (205)
T ss_dssp             HHHHTT--TT-EEEEES-T-TSHHHHHHHH--HH--SEEEEEE-SHHHHHHHHHHHHHHHHHHHHCTB---EEEEECS-T
T ss_pred             HHHHhCCCCCCEEEECCCC-CCHHHHHHHH--HcCCcEEEEEEechHHHHHHHHHHHHHHHHHHHhhcccccceeeccCc
Confidence            3445567889999999999 5766565554  46776 9999999999999886543       3442235789999998


Q ss_pred             cchh---hcCCCcceeehhhhccCChhHHHHHHHHHHhhccCCcEEEEe
Q 042119          194 MEVK---EQLGEYDCIFLAALVGMSKEEKLTILGHIRKYMKDGGILLVR  239 (286)
Q Consensus       194 ~~~~---~~l~~fD~V~~aalvg~~~~~k~~vl~~l~~~l~pgg~lv~r  239 (286)
                      .+..   ..+.+.|+||+..+. .+. +...-|..+...||+|.++|.-
T Consensus       111 l~~~~~~~~~s~AdvVf~Nn~~-F~~-~l~~~L~~~~~~lk~G~~IIs~  157 (205)
T PF08123_consen  111 LDPDFVKDIWSDADVVFVNNTC-FDP-DLNLALAELLLELKPGARIIST  157 (205)
T ss_dssp             TTHHHHHHHGHC-SEEEE--TT-T-H-HHHHHHHHHHTTS-TT-EEEES
T ss_pred             cccHhHhhhhcCCCEEEEeccc-cCH-HHHHHHHHHHhcCCCCCEEEEC
Confidence            6533   124678999988764 333 3444557788899999998863

H3 methylation by DOT1 has been shown to be required for the DNA damage checkpoint in yeast [].; GO: 0018024 histone-lysine N-methyltransferase activity; PDB: 4ER3_A 4ER6_A 4EQZ_A 1NW3_A 3UWP_A 4ER5_A 3QOX_A 3SX0_A 4ER7_A 3SR4_A ....

>KOG2915 consensus tRNA(1-methyladenosine) methyltransferase, subunit GCD14 [Translation, ribosomal structure and biogenesis]

Probab=98.19  E-value=1.3e-05  Score=73.49  Aligned_cols=104  Identities=19%  Similarity=0.239  Sum_probs=87.7

Q ss_pred             CCCCCCEEEEeccCCChhhHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEccccchhhcCC--Ccc
Q 042119          127 GVVQPKKVAFVGSGPMPLTSIIMAKHHLTSTHFDNFDIDEAANDVARSIVASDAEFEGRMKFLTRDIMEVKEQLG--EYD  204 (286)
Q Consensus       127 ~~~~~~~VL~IG~G~lp~tai~lA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~g~l~~~i~f~~~D~~~~~~~l~--~fD  204 (286)
                      .+.+|++|++-|+|.+++| -.+|+...|-+++..+|......+.|++-++..| +++++++.+-|+....+..+  .+|
T Consensus       102 ~i~PGsvV~EsGTGSGSlS-haiaraV~ptGhl~tfefH~~Ra~ka~eeFr~hg-i~~~vt~~hrDVc~~GF~~ks~~aD  179 (314)
T KOG2915|consen  102 EIRPGSVVLESGTGSGSLS-HAIARAVAPTGHLYTFEFHETRAEKALEEFREHG-IGDNVTVTHRDVCGSGFLIKSLKAD  179 (314)
T ss_pred             cCCCCCEEEecCCCcchHH-HHHHHhhCcCcceEEEEecHHHHHHHHHHHHHhC-CCcceEEEEeecccCCccccccccc
Confidence            4689999999999987765 5677767789999999999999999999999999 89999999999977666553  599


Q ss_pred             eeehhhhccCChhHHHHHHHHHHhhccCCcEEEE
Q 042119          205 CIFLAALVGMSKEEKLTILGHIRKYMKDGGILLV  238 (286)
Q Consensus       205 ~V~~aalvg~~~~~k~~vl~~l~~~l~pgg~lv~  238 (286)
                      .||++-      +.....+-+..+.+|.+|.-++
T Consensus       180 aVFLDl------PaPw~AiPha~~~lk~~g~r~c  207 (314)
T KOG2915|consen  180 AVFLDL------PAPWEAIPHAAKILKDEGGRLC  207 (314)
T ss_pred             eEEEcC------CChhhhhhhhHHHhhhcCceEE
Confidence            999884      3556788899999998885444

>COG0742 N6-adenine-specific methylase [DNA replication, recombination, and repair]

Probab=98.18  E-value=2.4e-05  Score=68.35  Aligned_cols=110  Identities=19%  Similarity=0.269  Sum_probs=82.7

Q ss_pred             CCCCEEEEeccCCChhhHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEccccchhhcCC---Ccce
Q 042119          129 VQPKKVAFVGSGPMPLTSIIMAKHHLTSTHFDNFDIDEAANDVARSIVASDAEFEGRMKFLTRDIMEVKEQLG---EYDC  205 (286)
Q Consensus       129 ~~~~~VL~IG~G~lp~tai~lA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~g~l~~~i~f~~~D~~~~~~~l~---~fD~  205 (286)
                      -.+.++||+=+|.+.+....+.+   ...+++.||.|..+....+++++.+| +..+.+++..|+...+..+.   .||+
T Consensus        42 i~g~~~LDlFAGSGaLGlEAlSR---GA~~~~~vE~~~~a~~~l~~N~~~l~-~~~~~~~~~~da~~~L~~~~~~~~FDl  117 (187)
T COG0742          42 IEGARVLDLFAGSGALGLEALSR---GAARVVFVEKDRKAVKILKENLKALG-LEGEARVLRNDALRALKQLGTREPFDL  117 (187)
T ss_pred             cCCCEEEEecCCccHhHHHHHhC---CCceEEEEecCHHHHHHHHHHHHHhC-CccceEEEeecHHHHHHhcCCCCcccE
Confidence            46889999866665666666666   56789999999999999999999999 78899999999986544442   3999


Q ss_pred             eehhhhccCChhHHHHHHHH--HHhhccCCcEEEEeecC
Q 042119          206 IFLAALVGMSKEEKLTILGH--IRKYMKDGGILLVRSAK  242 (286)
Q Consensus       206 V~~aalvg~~~~~k~~vl~~--l~~~l~pgg~lv~r~~~  242 (286)
                      ||++---....-++...+..  -...|+|||.+++....
T Consensus       118 VflDPPy~~~l~~~~~~~~~~~~~~~L~~~~~iv~E~~~  156 (187)
T COG0742         118 VFLDPPYAKGLLDKELALLLLEENGWLKPGALIVVEHDK  156 (187)
T ss_pred             EEeCCCCccchhhHHHHHHHHHhcCCcCCCcEEEEEeCC
Confidence            99885322222333444444  34569999999998754

>COG1041 Predicted DNA modification methylase [DNA replication, recombination, and repair]

Probab=98.18  E-value=2.6e-05  Score=73.98  Aligned_cols=109  Identities=17%  Similarity=0.091  Sum_probs=84.6

Q ss_pred             CCCCCCEEEEeccCCChhhHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEc-cccchhhcCCCcce
Q 042119          127 GVVQPKKVAFVGSGPMPLTSIIMAKHHLTSTHFDNFDIDEAANDVARSIVASDAEFEGRMKFLTR-DIMEVKEQLGEYDC  205 (286)
Q Consensus       127 ~~~~~~~VL~IG~G~lp~tai~lA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~g~l~~~i~f~~~-D~~~~~~~l~~fD~  205 (286)
                      .+++|..|||==||++|+   .+.. .+.|++++|.|+|..|++-|+.+++..|.  ....+..+ |+.+++..-..||.
T Consensus       194 ~v~~G~~vlDPFcGTGgi---LiEa-gl~G~~viG~Did~~mv~gak~Nl~~y~i--~~~~~~~~~Da~~lpl~~~~vda  267 (347)
T COG1041         194 RVKRGELVLDPFCGTGGI---LIEA-GLMGARVIGSDIDERMVRGAKINLEYYGI--EDYPVLKVLDATNLPLRDNSVDA  267 (347)
T ss_pred             ccccCCEeecCcCCccHH---HHhh-hhcCceEeecchHHHHHhhhhhhhhhhCc--CceeEEEecccccCCCCCCccce
Confidence            357889999999998654   3333 36899999999999999999999999993  45666666 99998854345999


Q ss_pred             eehhhhc-------cCC-hhHHHHHHHHHHhhccCCcEEEEeec
Q 042119          206 IFLAALV-------GMS-KEEKLTILGHIRKYMKDGGILLVRSA  241 (286)
Q Consensus       206 V~~aalv-------g~~-~~~k~~vl~~l~~~l~pgg~lv~r~~  241 (286)
                      |..+---       +.. .+-..++|+...++|++||.+++-..
T Consensus       268 IatDPPYGrst~~~~~~l~~Ly~~~le~~~evLk~gG~~vf~~p  311 (347)
T COG1041         268 IATDPPYGRSTKIKGEGLDELYEEALESASEVLKPGGRIVFAAP  311 (347)
T ss_pred             EEecCCCCcccccccccHHHHHHHHHHHHHHHhhcCcEEEEecC
Confidence            9776421       111 24578999999999999999988765

>KOG3010 consensus Methyltransferase [General function prediction only]

Probab=98.14  E-value=5.4e-06  Score=74.82  Aligned_cols=100  Identities=16%  Similarity=0.135  Sum_probs=69.5

Q ss_pred             CEEEEeccCCChhhHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEccccchhhcCCCcceeehhhh
Q 042119          132 KKVAFVGSGPMPLTSIIMAKHHLTSTHFDNFDIDEAANDVARSIVASDAEFEGRMKFLTRDIMEVKEQLGEYDCIFLAAL  211 (286)
Q Consensus       132 ~~VL~IG~G~lp~tai~lA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~g~l~~~i~f~~~D~~~~~~~l~~fD~V~~aal  211 (286)
                      +-++|||||+ |.+++.+|. ++  -+|+++|++++|++.|++...--- .....++...+..++....++.|+|..+-.
T Consensus        35 ~~a~DvG~G~-Gqa~~~iae-~~--k~VIatD~s~~mL~~a~k~~~~~y-~~t~~~ms~~~~v~L~g~e~SVDlI~~Aqa  109 (261)
T KOG3010|consen   35 RLAWDVGTGN-GQAARGIAE-HY--KEVIATDVSEAMLKVAKKHPPVTY-CHTPSTMSSDEMVDLLGGEESVDLITAAQA  109 (261)
T ss_pred             ceEEEeccCC-CcchHHHHH-hh--hhheeecCCHHHHHHhhcCCCccc-ccCCccccccccccccCCCcceeeehhhhh
Confidence            4899999998 599999998 33  679999999999998888532111 112233333333333333457999987755


Q ss_pred             ccCChhHHHHHHHHHHhhccCCc-EEEE
Q 042119          212 VGMSKEEKLTILGHIRKYMKDGG-ILLV  238 (286)
Q Consensus       212 vg~~~~~k~~vl~~l~~~l~pgg-~lv~  238 (286)
                      ++|  =+-.+++..+.|+||+.| ++.+
T Consensus       110 ~HW--Fdle~fy~~~~rvLRk~Gg~iav  135 (261)
T KOG3010|consen  110 VHW--FDLERFYKEAYRVLRKDGGLIAV  135 (261)
T ss_pred             HHh--hchHHHHHHHHHHcCCCCCEEEE
Confidence            555  355579999999999877 5555

>KOG1499 consensus Protein arginine N-methyltransferase PRMT1 and related enzymes [Posttranslational modification, protein turnover, chaperones; Transcription; Signal transduction mechanisms]

Probab=98.12  E-value=1.2e-05  Score=75.98  Aligned_cols=103  Identities=21%  Similarity=0.318  Sum_probs=76.3

Q ss_pred             CCCCEEEEeccCCChhhHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEccccchhhcCCCcceeeh
Q 042119          129 VQPKKVAFVGSGPMPLTSIIMAKHHLTSTHFDNFDIDEAANDVARSIVASDAEFEGRMKFLTRDIMEVKEQLGEYDCIFL  208 (286)
Q Consensus       129 ~~~~~VL~IG~G~lp~tai~lA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~g~l~~~i~f~~~D~~~~~~~l~~fD~V~~  208 (286)
                      -.++.|||||||+ |.-++.-|++  ...+|+++|.|.-+ +.|++++...| +++.|+++.|.+.++.-+....|+++-
T Consensus        59 f~dK~VlDVGcGt-GILS~F~akA--GA~~V~aVe~S~ia-~~a~~iv~~N~-~~~ii~vi~gkvEdi~LP~eKVDiIvS  133 (346)
T KOG1499|consen   59 FKDKTVLDVGCGT-GILSMFAAKA--GARKVYAVEASSIA-DFARKIVKDNG-LEDVITVIKGKVEDIELPVEKVDIIVS  133 (346)
T ss_pred             cCCCEEEEcCCCc-cHHHHHHHHh--CcceEEEEechHHH-HHHHHHHHhcC-ccceEEEeecceEEEecCccceeEEee
Confidence            4689999999995 7778888883  35789999999555 99999999999 899999999999987555668998842


Q ss_pred             ---hhhccCChhHHHHHHHHHHhhccCCcEEE
Q 042119          209 ---AALVGMSKEEKLTILGHIRKYMKDGGILL  237 (286)
Q Consensus       209 ---aalvg~~~~~k~~vl~~l~~~l~pgg~lv  237 (286)
                         ....- ....-..+|-.=-+.|+|||.+.
T Consensus       134 EWMGy~Ll-~EsMldsVl~ARdkwL~~~G~i~  164 (346)
T KOG1499|consen  134 EWMGYFLL-YESMLDSVLYARDKWLKEGGLIY  164 (346)
T ss_pred             hhhhHHHH-HhhhhhhhhhhhhhccCCCceEc
Confidence               22110 00122234444446889999874

>COG1352 CheR Methylase of chemotaxis methyl-accepting proteins [Cell motility and secretion / Signal transduction mechanisms]

Probab=98.12  E-value=2.8e-05  Score=71.78  Aligned_cols=114  Identities=19%  Similarity=0.334  Sum_probs=84.1

Q ss_pred             CCCEEEEeccCCC--hhhHHHHHhhcCC-----CcEEEEEeCChHHHHHHHHHHHh-----cC--------------C--
Q 042119          130 QPKKVAFVGSGPM--PLTSIIMAKHHLT-----STHFDNFDIDEAANDVARSIVAS-----DA--------------E--  181 (286)
Q Consensus       130 ~~~~VL~IG~G~l--p~tai~lA~~~~~-----g~~V~~iDid~~ai~~Ar~~~~~-----~g--------------~--  181 (286)
                      .+-||.-.||+++  |+|..++...+++     ..+|++.|||..+++.|++-+=.     .|              .  
T Consensus        96 ~~irIWSaaCStGEEpYSiAm~l~e~~~~~~~~~~~I~AtDId~~~L~~A~~G~Y~~~~~~~~~~~~~~~ryF~~~~~~~  175 (268)
T COG1352          96 RPIRIWSAACSTGEEPYSLAMLLLEALGKLAGFRVKILATDIDLSVLEKARAGIYPSRELLRGLPPELLRRYFERGGDGS  175 (268)
T ss_pred             CceEEEecCcCCCccHHHHHHHHHHHhccccCCceEEEEEECCHHHHHHHhcCCCChhHhhccCCHHHHhhhEeecCCCc
Confidence            5789999999875  5665444443443     68999999999999999753211     11              0  


Q ss_pred             ------CCCCeEEEEccccchhhcCCCcceeehhh-hccCChhHHHHHHHHHHhhccCCcEEEEeecCc
Q 042119          182 ------FEGRMKFLTRDIMEVKEQLGEYDCIFLAA-LVGMSKEEKLTILGHIRKYMKDGGILLVRSAKG  243 (286)
Q Consensus       182 ------l~~~i~f~~~D~~~~~~~l~~fD~V~~aa-lvg~~~~~k~~vl~~l~~~l~pgg~lv~r~~~g  243 (286)
                            +.+.|.|...|..+-....+.||+||.-. ++-++.+.|.+++..++..|+|||.|++-....
T Consensus       176 y~v~~~ir~~V~F~~~NLl~~~~~~~~fD~IfCRNVLIYFd~~~q~~il~~f~~~L~~gG~LflG~sE~  244 (268)
T COG1352         176 YRVKEELRKMVRFRRHNLLDDSPFLGKFDLIFCRNVLIYFDEETQERILRRFADSLKPGGLLFLGHSET  244 (268)
T ss_pred             EEEChHHhcccEEeecCCCCCccccCCCCEEEEcceEEeeCHHHHHHHHHHHHHHhCCCCEEEEccCcc
Confidence                  12467888888766443445799999754 447899999999999999999999999976443

>PF05958 tRNA_U5-meth_tr: tRNA (Uracil-5-)-methyltransferase; InterPro: IPR010280 This family consists of (uracil-5-)-methyltransferases 2

Probab=98.11  E-value=1e-05  Score=77.35  Aligned_cols=74  Identities=20%  Similarity=0.236  Sum_probs=54.7

Q ss_pred             CCEEEEeccCCChhhHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEccccchhhc-----------
Q 042119          131 PKKVAFVGSGPMPLTSIIMAKHHLTSTHFDNFDIDEAANDVARSIVASDAEFEGRMKFLTRDIMEVKEQ-----------  199 (286)
Q Consensus       131 ~~~VL~IG~G~lp~tai~lA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~g~l~~~i~f~~~D~~~~~~~-----------  199 (286)
                      +.+|+|+=|| .|.-++.+|+   ...+|+|||++++|++.|+++++..|.  ++++|+++++.++...           
T Consensus       197 ~~~vlDlycG-~G~fsl~la~---~~~~V~gvE~~~~av~~A~~Na~~N~i--~n~~f~~~~~~~~~~~~~~~r~~~~~~  270 (352)
T PF05958_consen  197 KGDVLDLYCG-VGTFSLPLAK---KAKKVIGVEIVEEAVEDARENAKLNGI--DNVEFIRGDAEDFAKALAKAREFNRLK  270 (352)
T ss_dssp             TTEEEEES-T-TTCCHHHHHC---CSSEEEEEES-HHHHHHHHHHHHHTT----SEEEEE--SHHCCCHHCCS-GGTTGG
T ss_pred             CCcEEEEeec-CCHHHHHHHh---hCCeEEEeeCCHHHHHHHHHHHHHcCC--CcceEEEeeccchhHHHHhhHHHHhhh
Confidence            3489999999 5777889998   678999999999999999999999994  7899999988665321           


Q ss_pred             ---C--CCcceeehhh
Q 042119          200 ---L--GEYDCIFLAA  210 (286)
Q Consensus       200 ---l--~~fD~V~~aa  210 (286)
                         +  ..+|+|+++-
T Consensus       271 ~~~~~~~~~d~vilDP  286 (352)
T PF05958_consen  271 GIDLKSFKFDAVILDP  286 (352)
T ss_dssp             GS-GGCTTESEEEE--
T ss_pred             hhhhhhcCCCEEEEcC
Confidence               1  1478888873

1.1.35 from EC from bacteria, archaea and eukaryotes. A 5-methyluridine (m(5)U) residue at position 54 is a conserved feature of bacterial and eukaryotic tRNAs. The methylation of U54 is catalysed by the tRNA(m5U54)methyltransferase, which in Saccharomyces cerevisiae is encoded by the nonessential TRM2 gene. It is thought that tRNA modification enzymes might have a role in tRNA maturation not necessarily linked to their known catalytic activity []. This protein family also contains the 23SrRNA methyltransferases, first proposed to be RNA methyltransferases by homology to the TrmA family. The member from Escherichia coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA [].; GO: 0008173 RNA methyltransferase activity, 0006396 RNA processing; PDB: 2VS1_A 2JJQ_A 2BH2_A 1UWV_A 3BT7_B.

>TIGR00308 TRM1 tRNA(guanine-26,N2-N2) methyltransferase

Probab=98.10  E-value=2.3e-05  Score=75.57  Aligned_cols=101  Identities=16%  Similarity=0.179  Sum_probs=80.3

Q ss_pred             CCEEEEeccCCChhhHHHHHhhcCCC-cEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEccccchhhcC-CCcceeeh
Q 042119          131 PKKVAFVGSGPMPLTSIIMAKHHLTS-THFDNFDIDEAANDVARSIVASDAEFEGRMKFLTRDIMEVKEQL-GEYDCIFL  208 (286)
Q Consensus       131 ~~~VL~IG~G~lp~tai~lA~~~~~g-~~V~~iDid~~ai~~Ar~~~~~~g~l~~~i~f~~~D~~~~~~~l-~~fD~V~~  208 (286)
                      +-+|||..||. |.=++..+++ .+| .+|+++|++|++++.++++++..+ + .++++.++|+..+.... ..||+|++
T Consensus        45 ~~~vLD~faGs-G~rgir~a~e-~~ga~~Vv~nD~n~~Av~~i~~N~~~N~-~-~~~~v~~~Da~~~l~~~~~~fDvIdl  120 (374)
T TIGR00308        45 YINIADALSAS-GIRAIRYAHE-IEGVREVFANDINPKAVESIKNNVEYNS-V-ENIEVPNEDAANVLRYRNRKFHVIDI  120 (374)
T ss_pred             CCEEEECCCch-hHHHHHHHhh-CCCCCEEEEEeCCHHHHHHHHHHHHHhC-C-CcEEEEchhHHHHHHHhCCCCCEEEe
Confidence            35899999996 5555666662 234 589999999999999999999888 3 47899999998876543 36999999


Q ss_pred             hhhccCChhHHHHHHHHHHhhccCCcEEEEee
Q 042119          209 AALVGMSKEEKLTILGHIRKYMKDGGILLVRS  240 (286)
Q Consensus       209 aalvg~~~~~k~~vl~~l~~~l~pgg~lv~r~  240 (286)
                      +-. |    ....+++.+.+.+++||.|.+..
T Consensus       121 DPf-G----s~~~fld~al~~~~~~glL~vTa  147 (374)
T TIGR00308       121 DPF-G----TPAPFVDSAIQASAERGLLLVTA  147 (374)
T ss_pred             CCC-C----CcHHHHHHHHHhcccCCEEEEEe
Confidence            874 4    22368899999999999999874

This enzyme is responsible for two methylations of a characteristic guanine of most tRNA molecules. The activity has been demonstrated for eukaryotic and archaeal proteins, which are active when expressed in E. coli, a species that lacks this enzyme. At least one Eubacterium, Aquifex aeolicus, has an ortholog, as do all completed archaeal genomes.

>KOG1975 consensus mRNA cap methyltransferase [RNA processing and modification]

Probab=98.10  E-value=1.9e-05  Score=74.03  Aligned_cols=109  Identities=17%  Similarity=0.175  Sum_probs=75.4

Q ss_pred             CCCCEEEEeccCCChhhHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCC----CeEEEEccccchh------h
Q 042119          129 VQPKKVAFVGSGPMPLTSIIMAKHHLTSTHFDNFDIDEAANDVARSIVASDAEFEG----RMKFLTRDIMEVK------E  198 (286)
Q Consensus       129 ~~~~~VL~IG~G~lp~tai~lA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~g~l~~----~i~f~~~D~~~~~------~  198 (286)
                      ++++.++++|||-+|- ++-.-++  .-.+++|+||.+..++.|++..+......+    ...|++||-....      .
T Consensus       116 ~~~~~~~~LgCGKGGD-LlKw~kA--gI~~~igiDIAevSI~qa~~RYrdm~~r~~~~~f~a~f~~~Dc~~~~l~d~~e~  192 (389)
T KOG1975|consen  116 KRGDDVLDLGCGKGGD-LLKWDKA--GIGEYIGIDIAEVSINQARKRYRDMKNRFKKFIFTAVFIAADCFKERLMDLLEF  192 (389)
T ss_pred             ccccccceeccCCccc-HhHhhhh--cccceEeeehhhccHHHHHHHHHHHHhhhhcccceeEEEEeccchhHHHHhccC
Confidence            6789999999997664 4544442  346799999999999999998876532223    4789999975321      1


Q ss_pred             cCCCcceeehh-hhc-cC-ChhHHHHHHHHHHhhccCCcEEEEee
Q 042119          199 QLGEYDCIFLA-ALV-GM-SKEEKLTILGHIRKYMKDGGILLVRS  240 (286)
Q Consensus       199 ~l~~fD~V~~a-alv-g~-~~~~k~~vl~~l~~~l~pgg~lv~r~  240 (286)
                      +...||+|=.- ++. .+ +.+.-..+|.++.+.|+|||++|-.-
T Consensus       193 ~dp~fDivScQF~~HYaFetee~ar~~l~Nva~~LkpGG~FIgTi  237 (389)
T KOG1975|consen  193 KDPRFDIVSCQFAFHYAFETEESARIALRNVAKCLKPGGVFIGTI  237 (389)
T ss_pred             CCCCcceeeeeeeEeeeeccHHHHHHHHHHHHhhcCCCcEEEEec
Confidence            12249998321 111 12 33444567899999999999999853

>COG2265 TrmA SAM-dependent methyltransferases related to tRNA (uracil-5-)-methyltransferase [Translation, ribosomal structure and biogenesis]

Probab=98.09  E-value=1.6e-05  Score=78.01  Aligned_cols=101  Identities=18%  Similarity=0.226  Sum_probs=79.8

Q ss_pred             CCCCCCEEEEeccCCChhhHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEccccchhhcCC---Cc
Q 042119          127 GVVQPKKVAFVGSGPMPLTSIIMAKHHLTSTHFDNFDIDEAANDVARSIVASDAEFEGRMKFLTRDIMEVKEQLG---EY  203 (286)
Q Consensus       127 ~~~~~~~VL~IG~G~lp~tai~lA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~g~l~~~i~f~~~D~~~~~~~l~---~f  203 (286)
                      ...++++|+|.=|| .|.-++.+|+   ...+|+|+|+++++++.|+++++..|.  ++++|+.+|+.++...+.   .|
T Consensus       290 ~~~~~~~vlDlYCG-vG~f~l~lA~---~~~~V~gvEi~~~aV~~A~~NA~~n~i--~N~~f~~~~ae~~~~~~~~~~~~  363 (432)
T COG2265         290 ELAGGERVLDLYCG-VGTFGLPLAK---RVKKVHGVEISPEAVEAAQENAAANGI--DNVEFIAGDAEEFTPAWWEGYKP  363 (432)
T ss_pred             hhcCCCEEEEeccC-CChhhhhhcc---cCCEEEEEecCHHHHHHHHHHHHHcCC--CcEEEEeCCHHHHhhhccccCCC
Confidence            44677999999999 6777899997   789999999999999999999999994  459999999999887763   68


Q ss_pred             ceeehhhhc-cCChhHHHHHHHHHHhhccCCcEEEE
Q 042119          204 DCIFLAALV-GMSKEEKLTILGHIRKYMKDGGILLV  238 (286)
Q Consensus       204 D~V~~aalv-g~~~~~k~~vl~~l~~~l~pgg~lv~  238 (286)
                      |.|+++--= |++    .++++.+.+. +|..++-+
T Consensus       364 d~VvvDPPR~G~~----~~~lk~l~~~-~p~~IvYV  394 (432)
T COG2265         364 DVVVVDPPRAGAD----REVLKQLAKL-KPKRIVYV  394 (432)
T ss_pred             CEEEECCCCCCCC----HHHHHHHHhc-CCCcEEEE
Confidence            999998432 432    2466667655 55544433

>PF09243 Rsm22: Mitochondrial small ribosomal subunit Rsm22; InterPro: IPR015324 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms

Probab=98.09  E-value=3.9e-05  Score=70.93  Aligned_cols=104  Identities=13%  Similarity=0.238  Sum_probs=69.2

Q ss_pred             CCCCEEEEeccCCChhhHHHHHhhcCC-CcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEccccchhhcCCCcceee
Q 042119          129 VQPKKVAFVGSGPMPLTSIIMAKHHLT-STHFDNFDIDEAANDVARSIVASDAEFEGRMKFLTRDIMEVKEQLGEYDCIF  207 (286)
Q Consensus       129 ~~~~~VL~IG~G~lp~tai~lA~~~~~-g~~V~~iDid~~ai~~Ar~~~~~~g~l~~~i~f~~~D~~~~~~~l~~fD~V~  207 (286)
                      -.|++|||+|||| | |+++-+....+ -.+++++|.|+.+++.|+.+++.... .....+. .+......+....|+|+
T Consensus        32 f~P~~vLD~GsGp-G-ta~wAa~~~~~~~~~~~~vd~s~~~~~l~~~l~~~~~~-~~~~~~~-~~~~~~~~~~~~~DLvi  107 (274)
T PF09243_consen   32 FRPRSVLDFGSGP-G-TALWAAREVWPSLKEYTCVDRSPEMLELAKRLLRAGPN-NRNAEWR-RVLYRDFLPFPPDDLVI  107 (274)
T ss_pred             CCCceEEEecCCh-H-HHHHHHHHHhcCceeeeeecCCHHHHHHHHHHHhcccc-cccchhh-hhhhcccccCCCCcEEE
Confidence            5789999999997 3 55655553333 45799999999999999999886552 2222121 11111112333459998


Q ss_pred             hhhhc-cCChhHHHHHHHHHHhhccCCcEEEE
Q 042119          208 LAALV-GMSKEEKLTILGHIRKYMKDGGILLV  238 (286)
Q Consensus       208 ~aalv-g~~~~~k~~vl~~l~~~l~pgg~lv~  238 (286)
                      .+... .++.+.+.++++.+.+.+++  .||+
T Consensus       108 ~s~~L~EL~~~~r~~lv~~LW~~~~~--~LVl  137 (274)
T PF09243_consen  108 ASYVLNELPSAARAELVRSLWNKTAP--VLVL  137 (274)
T ss_pred             EehhhhcCCchHHHHHHHHHHHhccC--cEEE
Confidence            77654 44447888999999988776  4444

The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. Rsm22 has been identified as a mitochondrial small ribosomal subunit [] and is a methyltransferase. In Schizosaccharomyces pombe (Fission yeast), Rsm22 is tandemly fused to Cox11 (a factor required for copper insertion into cytochrome oxidase) and the two proteins are proteolytically cleaved after import into the mitochondria []. This entry consists of mitochondrial Rsm22 and homologous sequences from bacteria.; GO: 0008168 methyltransferase activity, 0006412 translation

>COG2520 Predicted methyltransferase [General function prediction only]

Probab=98.08  E-value=2.3e-05  Score=74.56  Aligned_cols=102  Identities=25%  Similarity=0.289  Sum_probs=84.8

Q ss_pred             CCCCEEEEeccCCChhhHHHHHhhcCCCcE-EEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEccccchhhcCCCcceee
Q 042119          129 VQPKKVAFVGSGPMPLTSIIMAKHHLTSTH-FDNFDIDEAANDVARSIVASDAEFEGRMKFLTRDIMEVKEQLGEYDCIF  207 (286)
Q Consensus       129 ~~~~~VL~IG~G~lp~tai~lA~~~~~g~~-V~~iDid~~ai~~Ar~~~~~~g~l~~~i~f~~~D~~~~~~~l~~fD~V~  207 (286)
                      ..|.+|+|.=+|-+|+ |+.+|+   .|.. |+++|++|+|++..+++++..+ ++++|..++||+.++...+..||.|+
T Consensus       187 ~~GE~V~DmFAGVGpf-si~~Ak---~g~~~V~A~diNP~A~~~L~eNi~LN~-v~~~v~~i~gD~rev~~~~~~aDrIi  261 (341)
T COG2520         187 KEGETVLDMFAGVGPF-SIPIAK---KGRPKVYAIDINPDAVEYLKENIRLNK-VEGRVEPILGDAREVAPELGVADRII  261 (341)
T ss_pred             cCCCEEEEccCCcccc-hhhhhh---cCCceEEEEecCHHHHHHHHHHHHhcC-ccceeeEEeccHHHhhhccccCCEEE
Confidence            5699999998885555 477887   4444 9999999999999999999999 78889999999999988878899999


Q ss_pred             hhhhccCChhHHHHHHHHHHhhccCCcEEEEee
Q 042119          208 LAALVGMSKEEKLTILGHIRKYMKDGGILLVRS  240 (286)
Q Consensus       208 ~aalvg~~~~~k~~vl~~l~~~l~pgg~lv~r~  240 (286)
                      +-...     .-.+++....+.+++||++-+..
T Consensus       262 m~~p~-----~a~~fl~~A~~~~k~~g~iHyy~  289 (341)
T COG2520         262 MGLPK-----SAHEFLPLALELLKDGGIIHYYE  289 (341)
T ss_pred             eCCCC-----cchhhHHHHHHHhhcCcEEEEEe
Confidence            76432     22358888888999999998865

>COG1063 Tdh Threonine dehydrogenase and related Zn-dependent dehydrogenases [Amino acid transport and metabolism / General function prediction only]

Probab=98.07  E-value=1.7e-05  Score=75.58  Aligned_cols=102  Identities=21%  Similarity=0.201  Sum_probs=73.1

Q ss_pred             CCCCEEEEeccCCChhhHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEc-cccchhhcC---CCcc
Q 042119          129 VQPKKVAFVGSGPMPLTSIIMAKHHLTSTHFDNFDIDEAANDVARSIVASDAEFEGRMKFLTR-DIMEVKEQL---GEYD  204 (286)
Q Consensus       129 ~~~~~VL~IG~G~lp~tai~lA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~g~l~~~i~f~~~-D~~~~~~~l---~~fD  204 (286)
                      .++.+|+.+|+||+|+.++.+|+ .+..++|+.+|++++.+++|++....     +.+..... +.......+   .+||
T Consensus       167 ~~~~~V~V~GaGpIGLla~~~a~-~~Ga~~Viv~d~~~~Rl~~A~~~~g~-----~~~~~~~~~~~~~~~~~~t~g~g~D  240 (350)
T COG1063         167 RPGGTVVVVGAGPIGLLAIALAK-LLGASVVIVVDRSPERLELAKEAGGA-----DVVVNPSEDDAGAEILELTGGRGAD  240 (350)
T ss_pred             CCCCEEEEECCCHHHHHHHHHHH-HcCCceEEEeCCCHHHHHHHHHhCCC-----eEeecCccccHHHHHHHHhCCCCCC
Confidence            44459999999999999999998 46668999999999999999996322     22222222 221111112   2599


Q ss_pred             eeehhhhccCChhHHHHHHHHHHhhccCCcEEEEeecCc
Q 042119          205 CIFLAALVGMSKEEKLTILGHIRKYMKDGGILLVRSAKG  243 (286)
Q Consensus       205 ~V~~aalvg~~~~~k~~vl~~l~~~l~pgg~lv~r~~~g  243 (286)
                      +||.++-.       ...++...+.++|||.+++-...+
T Consensus       241 ~vie~~G~-------~~~~~~ai~~~r~gG~v~~vGv~~  272 (350)
T COG1063         241 VVIEAVGS-------PPALDQALEALRPGGTVVVVGVYG  272 (350)
T ss_pred             EEEECCCC-------HHHHHHHHHHhcCCCEEEEEeccC
Confidence            99987642       237888899999999999987544

>TIGR00561 pntA NAD(P) transhydrogenase, alpha subunit

Probab=98.06  E-value=1.2e-05  Score=80.32  Aligned_cols=99  Identities=27%  Similarity=0.335  Sum_probs=73.0

Q ss_pred             CCCCEEEEeccCCChhhHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEccccc-------------
Q 042119          129 VQPKKVAFVGSGPMPLTSIIMAKHHLTSTHFDNFDIDEAANDVARSIVASDAEFEGRMKFLTRDIME-------------  195 (286)
Q Consensus       129 ~~~~~VL~IG~G~lp~tai~lA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~g~l~~~i~f~~~D~~~-------------  195 (286)
                      .++.+|+.+|+|+.|+.++.+|+.  .|+.|+.+|.+++..+.+++    +|.     +++.-|..+             
T Consensus       162 vp~akVlViGaG~iGl~Aa~~ak~--lGA~V~v~d~~~~rle~a~~----lGa-----~~v~v~~~e~g~~~~gYa~~~s  230 (511)
T TIGR00561       162 VPPAKVLVIGAGVAGLAAIGAANS--LGAIVRAFDTRPEVKEQVQS----MGA-----EFLELDFKEEGGSGDGYAKVMS  230 (511)
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHH--CCCEEEEEeCCHHHHHHHHH----cCC-----eEEeccccccccccccceeecC
Confidence            578999999999999999999984  78999999999998777776    351     222222100             


Q ss_pred             ----------hhhcCCCcceeehhhhccCChhHHHHHHHHHHhhccCCcEEEEe
Q 042119          196 ----------VKEQLGEYDCIFLAALVGMSKEEKLTILGHIRKYMKDGGILLVR  239 (286)
Q Consensus       196 ----------~~~~l~~fD~V~~aalvg~~~~~k~~vl~~l~~~l~pgg~lv~r  239 (286)
                                +.....++|+||.++++...+.++ =+.+++.+.||||++++--
T Consensus       231 ~~~~~~~~~~~~e~~~~~DIVI~TalipG~~aP~-Lit~emv~~MKpGsvIVDl  283 (511)
T TIGR00561       231 EEFIAAEMELFAAQAKEVDIIITTALIPGKPAPK-LITEEMVDSMKAGSVIVDL  283 (511)
T ss_pred             HHHHHHHHHHHHHHhCCCCEEEECcccCCCCCCe-eehHHHHhhCCCCCEEEEe
Confidence                      222346799999998884333333 3788899999999998754

In some species, such as Rhodospirillum rubrum, the alpha chain is replaced by two shorter chains, both with some homology to the full-length alpha chain modeled here. These score below the trusted cutoff.

>PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed

Probab=98.03  E-value=3.4e-05  Score=77.17  Aligned_cols=109  Identities=16%  Similarity=0.114  Sum_probs=85.8

Q ss_pred             CCCCEEEEeccCCChhhHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEccccchhhcC--CCccee
Q 042119          129 VQPKKVAFVGSGPMPLTSIIMAKHHLTSTHFDNFDIDEAANDVARSIVASDAEFEGRMKFLTRDIMEVKEQL--GEYDCI  206 (286)
Q Consensus       129 ~~~~~VL~IG~G~lp~tai~lA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~g~l~~~i~f~~~D~~~~~~~l--~~fD~V  206 (286)
                      ....-+++||||- |-..+.+|+ ..|...++|||+....+..|.+.+.+.|+  .++.++++|+..+...+  +++|-|
T Consensus       346 ~~~p~~lEIG~G~-G~~~~~~A~-~~p~~~~iGiE~~~~~~~~~~~~~~~~~l--~N~~~~~~~~~~~~~~~~~~sv~~i  421 (506)
T PRK01544        346 EKRKVFLEIGFGM-GEHFINQAK-MNPDALFIGVEVYLNGVANVLKLAGEQNI--TNFLLFPNNLDLILNDLPNNSLDGI  421 (506)
T ss_pred             CCCceEEEECCCc-hHHHHHHHH-hCCCCCEEEEEeeHHHHHHHHHHHHHcCC--CeEEEEcCCHHHHHHhcCcccccEE
Confidence            4567899999995 666778888 58999999999999999999999888884  68999999876544433  358988


Q ss_pred             ehhhhccCChhH-------HHHHHHHHHhhccCCcEEEEeec
Q 042119          207 FLAALVGMSKEE-------KLTILGHIRKYMKDGGILLVRSA  241 (286)
Q Consensus       207 ~~aalvg~~~~~-------k~~vl~~l~~~l~pgg~lv~r~~  241 (286)
                      |+..--.|++..       ...+++.+++.|+|||.+-+++-
T Consensus       422 ~i~FPDPWpKkrh~krRl~~~~fl~~~~~~Lk~gG~i~~~TD  463 (506)
T PRK01544        422 YILFPDPWIKNKQKKKRIFNKERLKILQDKLKDNGNLVFASD  463 (506)
T ss_pred             EEECCCCCCCCCCccccccCHHHHHHHHHhcCCCCEEEEEcC
Confidence            876433553321       23688899999999999999874

>COG0686 Ald Alanine dehydrogenase [Amino acid transport and metabolism]

Probab=98.02  E-value=1.6e-05  Score=74.38  Aligned_cols=103  Identities=21%  Similarity=0.262  Sum_probs=88.6

Q ss_pred             CCCCEEEEeccCCChhhHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEccccchhhcCCCcceeeh
Q 042119          129 VQPKKVAFVGSGPMPLTSIIMAKHHLTSTHFDNFDIDEAANDVARSIVASDAEFEGRMKFLTRDIMEVKEQLGEYDCIFL  208 (286)
Q Consensus       129 ~~~~~VL~IG~G~lp~tai~lA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~g~l~~~i~f~~~D~~~~~~~l~~fD~V~~  208 (286)
                      ..+.+|..||.|-.|+-+..+|-  ..|+.|+-+|+|.+.++.-...   .+   .|++..-....++.....+.|+|+-
T Consensus       166 V~~~kv~iiGGGvvgtnaAkiA~--glgA~Vtild~n~~rl~~ldd~---f~---~rv~~~~st~~~iee~v~~aDlvIg  237 (371)
T COG0686         166 VLPAKVVVLGGGVVGTNAAKIAI--GLGADVTILDLNIDRLRQLDDL---FG---GRVHTLYSTPSNIEEAVKKADLVIG  237 (371)
T ss_pred             CCCccEEEECCccccchHHHHHh--ccCCeeEEEecCHHHHhhhhHh---hC---ceeEEEEcCHHHHHHHhhhccEEEE
Confidence            56789999999999999999997  6899999999999998777666   34   5788888888888888889999999


Q ss_pred             hhhccCChhHHHHHHHHHHhhccCCcEEEEee
Q 042119          209 AALVGMSKEEKLTILGHIRKYMKDGGILLVRS  240 (286)
Q Consensus       209 aalvg~~~~~k~~vl~~l~~~l~pgg~lv~r~  240 (286)
                      +.+++..+.+|. +.+++.+.||||++++-..
T Consensus       238 aVLIpgakaPkL-vt~e~vk~MkpGsVivDVA  268 (371)
T COG0686         238 AVLIPGAKAPKL-VTREMVKQMKPGSVIVDVA  268 (371)
T ss_pred             EEEecCCCCcee-hhHHHHHhcCCCcEEEEEE
Confidence            999966666774 8999999999999988654

>PRK09880 L-idonate 5-dehydrogenase; Provisional

Probab=98.02  E-value=2.8e-05  Score=73.05  Aligned_cols=105  Identities=17%  Similarity=0.242  Sum_probs=72.2

Q ss_pred             HHHhcCCCCCCEEEEeccCCChhhHHHHHhhcCCCc-EEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEccccchhhcC
Q 042119          122 ILSENGVVQPKKVAFVGSGPMPLTSIIMAKHHLTST-HFDNFDIDEAANDVARSIVASDAEFEGRMKFLTRDIMEVKEQL  200 (286)
Q Consensus       122 ~l~~~~~~~~~~VL~IG~G~lp~tai~lA~~~~~g~-~V~~iDid~~ai~~Ar~~~~~~g~l~~~i~f~~~D~~~~~~~l  200 (286)
                      ++.+....++++|+.+|+|++|+.++.+|+.  .|+ +|+++|.+++..+.+++    +|. ..-+.....|..+.....
T Consensus       161 al~~~~~~~g~~VlV~G~G~vG~~aiqlak~--~G~~~Vi~~~~~~~~~~~a~~----lGa-~~vi~~~~~~~~~~~~~~  233 (343)
T PRK09880        161 AAHQAGDLQGKRVFVSGVGPIGCLIVAAVKT--LGAAEIVCADVSPRSLSLARE----MGA-DKLVNPQNDDLDHYKAEK  233 (343)
T ss_pred             HHHhcCCCCCCEEEEECCCHHHHHHHHHHHH--cCCcEEEEEeCCHHHHHHHHH----cCC-cEEecCCcccHHHHhccC
Confidence            3444455678999999999999999999994  677 69999999999888876    452 111222222222222222


Q ss_pred             CCcceeehhhhccCChhHHHHHHHHHHhhccCCcEEEEee
Q 042119          201 GEYDCIFLAALVGMSKEEKLTILGHIRKYMKDGGILLVRS  240 (286)
Q Consensus       201 ~~fD~V~~aalvg~~~~~k~~vl~~l~~~l~pgg~lv~r~  240 (286)
                      +.||+||.+.  |.   .  ..++...+.|++||++++-.
T Consensus       234 g~~D~vid~~--G~---~--~~~~~~~~~l~~~G~iv~~G  266 (343)
T PRK09880        234 GYFDVSFEVS--GH---P--SSINTCLEVTRAKGVMVQVG  266 (343)
T ss_pred             CCCCEEEECC--CC---H--HHHHHHHHHhhcCCEEEEEc
Confidence            3599999653  31   1  35677888999999998865

>COG1064 AdhP Zn-dependent alcohol dehydrogenases [General function prediction only]

Probab=98.01  E-value=1.2e-05  Score=76.37  Aligned_cols=104  Identities=20%  Similarity=0.231  Sum_probs=75.9

Q ss_pred             HHHhcCCCCCCEEEEeccCCChhhHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEccccchhhcCC
Q 042119          122 ILSENGVVQPKKVAFVGSGPMPLTSIIMAKHHLTSTHFDNFDIDEAANDVARSIVASDAEFEGRMKFLTRDIMEVKEQLG  201 (286)
Q Consensus       122 ~l~~~~~~~~~~VL~IG~G~lp~tai~lA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~g~l~~~i~f~~~D~~~~~~~l~  201 (286)
                      .|.+...+++++|+.+|.|.+|..++.+|++  .|++|+++|++++-.+.|+++    |   .. .++.+.-.+......
T Consensus       158 alk~~~~~pG~~V~I~G~GGlGh~avQ~Aka--~ga~Via~~~~~~K~e~a~~l----G---Ad-~~i~~~~~~~~~~~~  227 (339)
T COG1064         158 ALKKANVKPGKWVAVVGAGGLGHMAVQYAKA--MGAEVIAITRSEEKLELAKKL----G---AD-HVINSSDSDALEAVK  227 (339)
T ss_pred             ehhhcCCCCCCEEEEECCcHHHHHHHHHHHH--cCCeEEEEeCChHHHHHHHHh----C---Cc-EEEEcCCchhhHHhH
Confidence            4555567899999999999999999999994  679999999999999999885    4   11 222221112222222


Q ss_pred             -CcceeehhhhccCChhHHHHHHHHHHhhccCCcEEEEeecCc
Q 042119          202 -EYDCIFLAALVGMSKEEKLTILGHIRKYMKDGGILLVRSAKG  243 (286)
Q Consensus       202 -~fD~V~~aalvg~~~~~k~~vl~~l~~~l~pgg~lv~r~~~g  243 (286)
                       .||+|+..+       . ..-++...+.|++||++++-...+
T Consensus       228 ~~~d~ii~tv-------~-~~~~~~~l~~l~~~G~~v~vG~~~  262 (339)
T COG1064         228 EIADAIIDTV-------G-PATLEPSLKALRRGGTLVLVGLPG  262 (339)
T ss_pred             hhCcEEEECC-------C-hhhHHHHHHHHhcCCEEEEECCCC
Confidence             399988543       2 346777888999999999987553

>PF01189 Nol1_Nop2_Fmu: NOL1/NOP2/sun family; InterPro: IPR001678 This domain is found in archaeal, bacterial and eukaryotic proteins

Probab=98.00  E-value=6.7e-05  Score=69.68  Aligned_cols=111  Identities=14%  Similarity=0.125  Sum_probs=86.2

Q ss_pred             CCCCCCEEEEeccCCChhhHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEccccchhh-cCC-Ccc
Q 042119          127 GVVQPKKVAFVGSGPMPLTSIIMAKHHLTSTHFDNFDIDEAANDVARSIVASDAEFEGRMKFLTRDIMEVKE-QLG-EYD  204 (286)
Q Consensus       127 ~~~~~~~VL~IG~G~lp~tai~lA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~g~l~~~i~f~~~D~~~~~~-~l~-~fD  204 (286)
                      .+.++.+|||..+||+|=|+ .+|......+.|++.|+++..+..-++.++++|.  ..+...+.|+..... ... .||
T Consensus        82 ~~~~~~~VLD~CAapGgKt~-~la~~~~~~g~i~A~D~~~~Rl~~l~~~~~r~g~--~~v~~~~~D~~~~~~~~~~~~fd  158 (283)
T PF01189_consen   82 DPQPGERVLDMCAAPGGKTT-HLAELMGNKGEIVANDISPKRLKRLKENLKRLGV--FNVIVINADARKLDPKKPESKFD  158 (283)
T ss_dssp             TTTTTSEEEESSCTTSHHHH-HHHHHTTTTSEEEEEESSHHHHHHHHHHHHHTT---SSEEEEESHHHHHHHHHHTTTEE
T ss_pred             cccccccccccccCCCCcee-eeeecccchhHHHHhccCHHHHHHHHHHHHhcCC--ceEEEEeeccccccccccccccc
Confidence            56889999999999998886 4555334468999999999999999999999995  678888899887632 223 599


Q ss_pred             eeehhhh------ccCChh---------------HHHHHHHHHHhhc----cCCcEEEEee
Q 042119          205 CIFLAAL------VGMSKE---------------EKLTILGHIRKYM----KDGGILLVRS  240 (286)
Q Consensus       205 ~V~~aal------vg~~~~---------------~k~~vl~~l~~~l----~pgg~lv~r~  240 (286)
                      .|++++-      +.-+++               -..++|++..+.+    ||||++++.+
T Consensus       159 ~VlvDaPCSg~G~i~r~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~~~~~~k~gG~lvYsT  219 (283)
T PF01189_consen  159 RVLVDAPCSGLGTIRRNPDIKWRRSPEDIEKLAELQREILDNAAKLLNIDFKPGGRLVYST  219 (283)
T ss_dssp             EEEEECSCCCGGGTTTCTTHHHHE-TTHHHHHHHHHHHHHHHHHHCEHHHBEEEEEEEEEE
T ss_pred             hhhcCCCccchhhhhhccchhhcccccccchHHHHHHHHHHHHHHhhcccccCCCeEEEEe
Confidence            9998762      111111               1457899999999    9999999975

In the archaea and bacteria, they are annotated as putative nucleolar protein, Sun (Fmu) family protein or tRNA/rRNA cytosine-C5-methylase. The majority have the S-adenosyl methionine (SAM) binding domain and are related to Escherichia coli Fmu (Sun) protein (16S rRNA m5C 967 methyltransferase) whose structure has been determined []. In the eukaryota, the majority are annotated as being 'hypothetical protein', nucleolar protein or the Nop2/Sun (Fmu) family. Unlike their bacterial homologues, few of the eukaryotic members in this family have a the SAM binding signature. Despite this, Saccharomyces cerevisiae (Baker's yeast) Nop2p is a probable RNA m5C methyltransferase []. It is essential for processing and maturation of 27S pre-rRNA and large ribosomal subunit biogenesis []; localized to the nucleolus and is essential for viability []. Reduced Nop2p expression limits yeast growth and decreases levels of mature 60S ribosomal subunits while altering rRNA processing []. There is substantial identity between Nop2p and Homo sapiens (Human) p120 (NOL1), which is also called the proliferation-associated nucleolar antigen [, ].; PDB: 3M4X_A 2FRX_B 2YXL_A 1IXK_A 1SQG_A 1SQF_A 3M6U_B 3M6V_B 3M6W_A 3M6X_A ....

>KOG0024 consensus Sorbitol dehydrogenase [Secondary metabolites biosynthesis, transport and catabolism]

Probab=97.99  E-value=1.6e-05  Score=74.64  Aligned_cols=117  Identities=20%  Similarity=0.283  Sum_probs=80.6

Q ss_pred             HHHhcCCCCCCEEEEeccCCChhhHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEc-----cccch
Q 042119          122 ILSENGVVQPKKVAFVGSGPMPLTSIIMAKHHLTSTHFDNFDIDEAANDVARSIVASDAEFEGRMKFLTR-----DIMEV  196 (286)
Q Consensus       122 ~l~~~~~~~~~~VL~IG~G~lp~tai~lA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~g~l~~~i~f~~~-----D~~~~  196 (286)
                      +.++.+.+.+++||.+|+||+|+-++..|+ ++--.+|+.+|.++.+++.|++    +|.  +-+.....     +..+.
T Consensus       161 Acr~~~vk~Gs~vLV~GAGPIGl~t~l~Ak-a~GA~~VVi~d~~~~Rle~Ak~----~Ga--~~~~~~~~~~~~~~~~~~  233 (354)
T KOG0024|consen  161 ACRRAGVKKGSKVLVLGAGPIGLLTGLVAK-AMGASDVVITDLVANRLELAKK----FGA--TVTDPSSHKSSPQELAEL  233 (354)
T ss_pred             hhhhcCcccCCeEEEECCcHHHHHHHHHHH-HcCCCcEEEeecCHHHHHHHHH----hCC--eEEeeccccccHHHHHHH
Confidence            445566799999999999999999999999 5666789999999999999999    451  22222211     11111


Q ss_pred             hh-cC--CCcceeehhhhccCChhHHHHHHHHHHhhccCCcEEEEeecCcceeeecccCC
Q 042119          197 KE-QL--GEYDCIFLAALVGMSKEEKLTILGHIRKYMKDGGILLVRSAKGARAFLYPVVV  253 (286)
Q Consensus       197 ~~-~l--~~fD~V~~aalvg~~~~~k~~vl~~l~~~l~pgg~lv~r~~~g~r~~lyp~v~  253 (286)
                      .. .+  ..||++|-++...       ..++.....+++||++++.. +|-...-+|..+
T Consensus       234 v~~~~g~~~~d~~~dCsG~~-------~~~~aai~a~r~gGt~vlvg-~g~~~~~fpi~~  285 (354)
T KOG0024|consen  234 VEKALGKKQPDVTFDCSGAE-------VTIRAAIKATRSGGTVVLVG-MGAEEIQFPIID  285 (354)
T ss_pred             HHhhccccCCCeEEEccCch-------HHHHHHHHHhccCCEEEEec-cCCCccccChhh
Confidence            11 22  2499999887652       24555677889999966654 444455566554

>PF01234 NNMT_PNMT_TEMT: NNMT/PNMT/TEMT family; InterPro: IPR000940 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals

Probab=97.99  E-value=5.6e-05  Score=69.32  Aligned_cols=152  Identities=17%  Similarity=0.251  Sum_probs=87.5

Q ss_pred             CCCCCCEEEEeccCCChhhHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCC------------------------
Q 042119          127 GVVQPKKVAFVGSGPMPLTSIIMAKHHLTSTHFDNFDIDEAANDVARSIVASDAEF------------------------  182 (286)
Q Consensus       127 ~~~~~~~VL~IG~G~lp~tai~lA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~g~l------------------------  182 (286)
                      +..++.+++||||||.-+.++..++   .=-+|+.-|..+...+.-++.+++.|..                        
T Consensus        53 g~~~g~~llDiGsGPtiy~~lsa~~---~f~~I~l~dy~~~N~~el~kWl~~~~a~DWs~~~~~v~~lEg~~~~~~e~e~  129 (256)
T PF01234_consen   53 GGVKGETLLDIGSGPTIYQLLSACE---WFEEIVLSDYSEQNREELEKWLRKEGAFDWSPFWKYVCELEGKREKWEEKEE  129 (256)
T ss_dssp             SSS-EEEEEEES-TT--GGGTTGGG---TEEEEEEEESSHHHHHHHHHHHTT-TS--THHHHHHHHHHTTSSSGHHHHHH
T ss_pred             cCcCCCEEEEeCCCcHHHhhhhHHH---hhcceEEeeccHhhHHHHHHHHCCCCCCCccHHHHHHHhccCCcchhhhHHH
Confidence            3456889999999998777665554   2356999999999888766666554310                        


Q ss_pred             --CCCe-EEEEccccchhh--c---CC-Ccceeehhhh---ccCChhHHHHHHHHHHhhccCCcEEEEeec-------Cc
Q 042119          183 --EGRM-KFLTRDIMEVKE--Q---LG-EYDCIFLAAL---VGMSKEEKLTILGHIRKYMKDGGILLVRSA-------KG  243 (286)
Q Consensus       183 --~~~i-~f~~~D~~~~~~--~---l~-~fD~V~~aal---vg~~~~~k~~vl~~l~~~l~pgg~lv~r~~-------~g  243 (286)
                        ...| .++..|+.....  +   +. .||+|+....   +.-+.+...+.+.++.+.|||||.|++-..       -|
T Consensus       130 ~lR~~Vk~Vv~cDV~~~~pl~~~~~~p~~~D~v~s~fcLE~a~~d~~~y~~al~ni~~lLkpGG~Lil~~~l~~t~Y~vG  209 (256)
T PF01234_consen  130 KLRRAVKQVVPCDVTQPNPLDPPVVLPPKFDCVISSFCLESACKDLDEYRRALRNISSLLKPGGHLILAGVLGSTYYMVG  209 (256)
T ss_dssp             HHHHHEEEEEE--TTSSSTTTTS-SS-SSEEEEEEESSHHHH-SSHHHHHHHHHHHHTTEEEEEEEEEEEESS-SEEEET
T ss_pred             HHHHhhceEEEeeccCCCCCCccccCccchhhhhhhHHHHHHcCCHHHHHHHHHHHHHHcCCCcEEEEEEEcCceeEEEC
Confidence              1123 266677765221  1   22 3999864322   245778999999999999999999999763       23


Q ss_pred             ceeeecccCCccc----c--cCcEEEEEecCccc-ceee--eEEEee
Q 042119          244 ARAFLYPVVVEHD----L--LDFEVLSAVHPNDD-VINS--VVLVRN  281 (286)
Q Consensus       244 ~r~~lyp~v~~~~----l--~gf~~~~~~~P~~~-vins--vi~~r~  281 (286)
                      -+.|.--.++.+.    +  .||++....++..- -+.+  +++|||
T Consensus       210 ~~~F~~l~l~ee~v~~al~~aG~~i~~~~~~~~~~d~~~~~f~~a~K  256 (256)
T PF01234_consen  210 GHKFPCLPLNEEFVREALEEAGFDIEDLEKQSKVSDYEGMFFLVARK  256 (256)
T ss_dssp             TEEEE---B-HHHHHHHHHHTTEEEEEEEG-TTTB---EEEEEEEEE
T ss_pred             CEecccccCCHHHHHHHHHHcCCEEEecccccCcCCCCcEEEEEEeC
Confidence            3332222223221    2  59988766652221 1223  566676

The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Several cytoplasmic vertebrate methyltransferases are evolutionary related [], including nicotinamide N-methyltransferase (2.1.1.1 from EC) (NNMT); phenylethanolamine N-methyltransferase (2.1.1.28 from EC) (PNMT); and thioether S-methyltransferase (2.1.1.96 from EC) (TEMT). NNMT catalyzes the N-methylation of nicotinamide and other pyridines to form pyridinium ions. This activity is important for the biotransformation of many drugs and xenobiotic compounds. PNMT catalyzes the last step in catecholamine biosynthesis, the conversion of noradrenalin to adrenalin; and TEMT catalyzes the methylation of dimethyl sulphide into trimethylsulphonium. These three enzymes use S-adenosyl-L-methionine as the methyl donor. They are proteins of 30 to 32 kDa.; GO: 0008168 methyltransferase activity; PDB: 2IIP_C 3ROD_A 2OBF_A 3HCA_B 2ONY_B 3KR1_A 2OPB_B 3KQP_B 2AN4_B 3KQM_A ....

>COG4262 Predicted spermidine synthase with an N-terminal membrane domain [General function prediction only]

Probab=97.94  E-value=0.00014  Score=69.48  Aligned_cols=111  Identities=12%  Similarity=0.217  Sum_probs=84.1

Q ss_pred             CCCCEEEEeccCCChhhHHHHHhhcCC-CcEEEEEeCChHHHHHHH--HHHHhcCC---CCCCeEEEEccccchhhcCC-
Q 042119          129 VQPKKVAFVGSGPMPLTSIIMAKHHLT-STHFDNFDIDEAANDVAR--SIVASDAE---FEGRMKFLTRDIMEVKEQLG-  201 (286)
Q Consensus       129 ~~~~~VL~IG~G~lp~tai~lA~~~~~-g~~V~~iDid~~ai~~Ar--~~~~~~g~---l~~~i~f~~~D~~~~~~~l~-  201 (286)
                      +..++||.+|+| =|+.+-.+-|  +| -.+||-+|.||++++.|+  ...++.+.   -..|++.+..|+.+....-+ 
T Consensus       288 ~~a~~vLvlGGG-DGLAlRellk--yP~~~qI~lVdLDP~miela~~~~vlr~~N~~sf~dpRv~Vv~dDAf~wlr~a~~  364 (508)
T COG4262         288 RGARSVLVLGGG-DGLALRELLK--YPQVEQITLVDLDPRMIELASHATVLRALNQGSFSDPRVTVVNDDAFQWLRTAAD  364 (508)
T ss_pred             cccceEEEEcCC-chHHHHHHHh--CCCcceEEEEecCHHHHHHhhhhhHhhhhccCCccCCeeEEEeccHHHHHHhhcc
Confidence            456899999999 5999998888  67 579999999999999999  55555431   24699999999988766443 


Q ss_pred             CcceeehhhhccCC----hhHHHHHHHHHHhhccCCcEEEEeecC
Q 042119          202 EYDCIFLAALVGMS----KEEKLTILGHIRKYMKDGGILLVRSAK  242 (286)
Q Consensus       202 ~fD~V~~aalvg~~----~~~k~~vl~~l~~~l~pgg~lv~r~~~  242 (286)
                      .||+|+++--=.-+    .=--.++..-+.++++++|.+++..++
T Consensus       365 ~fD~vIVDl~DP~tps~~rlYS~eFY~ll~~~l~e~Gl~VvQags  409 (508)
T COG4262         365 MFDVVIVDLPDPSTPSIGRLYSVEFYRLLSRHLAETGLMVVQAGS  409 (508)
T ss_pred             cccEEEEeCCCCCCcchhhhhhHHHHHHHHHhcCcCceEEEecCC
Confidence            69999987321100    001356788899999999999997643

>COG3963 Phospholipid N-methyltransferase [Lipid metabolism]

Probab=97.94  E-value=8e-05  Score=64.04  Aligned_cols=109  Identities=12%  Similarity=0.172  Sum_probs=86.1

Q ss_pred             hcCCCCCCEEEEeccCCChhhHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEccccchhhcC----
Q 042119          125 ENGVVQPKKVAFVGSGPMPLTSIIMAKHHLTSTHFDNFDIDEAANDVARSIVASDAEFEGRMKFLTRDIMEVKEQL----  200 (286)
Q Consensus       125 ~~~~~~~~~VL~IG~G~lp~tai~lA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~g~l~~~i~f~~~D~~~~~~~l----  200 (286)
                      ...+.++..||++|-|++.+|-..|++ ..+...++.|+.|++-+..-.+.   .    +.++++.||+.++...+    
T Consensus        43 ~I~pesglpVlElGPGTGV~TkaIL~~-gv~~~~L~~iE~~~dF~~~L~~~---~----p~~~ii~gda~~l~~~l~e~~  114 (194)
T COG3963          43 VIDPESGLPVLELGPGTGVITKAILSR-GVRPESLTAIEYSPDFVCHLNQL---Y----PGVNIINGDAFDLRTTLGEHK  114 (194)
T ss_pred             ccCcccCCeeEEEcCCccHhHHHHHhc-CCCccceEEEEeCHHHHHHHHHh---C----CCccccccchhhHHHHHhhcC
Confidence            456788999999999999999998987 57788999999999988766664   2    34679999998766323    


Q ss_pred             -CCcceeehhhhc-cCChhHHHHHHHHHHhhccCCcEEEEeec
Q 042119          201 -GEYDCIFLAALV-GMSKEEKLTILGHIRKYMKDGGILLVRSA  241 (286)
Q Consensus       201 -~~fD~V~~aalv-g~~~~~k~~vl~~l~~~l~pgg~lv~r~~  241 (286)
                       ..||.|+.+--+ ..+.....++++.+..++.+||.++-=+.
T Consensus       115 gq~~D~viS~lPll~~P~~~~iaile~~~~rl~~gg~lvqftY  157 (194)
T COG3963         115 GQFFDSVISGLPLLNFPMHRRIAILESLLYRLPAGGPLVQFTY  157 (194)
T ss_pred             CCeeeeEEeccccccCcHHHHHHHHHHHHHhcCCCCeEEEEEe
Confidence             249999855322 44667788999999999999999886553

>KOG2730 consensus Methylase [General function prediction only]

Probab=97.93  E-value=8e-06  Score=72.90  Aligned_cols=105  Identities=20%  Similarity=0.273  Sum_probs=77.4

Q ss_pred             CCCEEEEeccCCChhhHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEccccchhhcCC----Ccce
Q 042119          130 QPKKVAFVGSGPMPLTSIIMAKHHLTSTHFDNFDIDEAANDVARSIVASDAEFEGRMKFLTRDIMEVKEQLG----EYDC  205 (286)
Q Consensus       130 ~~~~VL~IG~G~lp~tai~lA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~g~l~~~i~f~~~D~~~~~~~l~----~fD~  205 (286)
                      ....|++.=||. |-.++.+|.   .+..|++||+||.-++.|+.+++.-| ..+||+|++||..++-..++    .+|+
T Consensus        94 ~~~~iidaf~g~-gGntiqfa~---~~~~VisIdiDPikIa~AkhNaeiYG-I~~rItFI~GD~ld~~~~lq~~K~~~~~  168 (263)
T KOG2730|consen   94 NAEVIVDAFCGV-GGNTIQFAL---QGPYVIAIDIDPVKIACARHNAEVYG-VPDRITFICGDFLDLASKLKADKIKYDC  168 (263)
T ss_pred             CcchhhhhhhcC-CchHHHHHH---hCCeEEEEeccHHHHHHHhccceeec-CCceeEEEechHHHHHHHHhhhhheeee
Confidence            567888888884 445567776   78999999999999999999999999 78899999999988655442    2668


Q ss_pred             eehhhhccCChhHHHHHHHHHHhhccCCcEEEEee
Q 042119          206 IFLAALVGMSKEEKLTILGHIRKYMKDGGILLVRS  240 (286)
Q Consensus       206 V~~aalvg~~~~~k~~vl~~l~~~l~pgg~lv~r~  240 (286)
                      ||..---|.+---+.. +-.+..++.|.|.-+.|.
T Consensus       169 vf~sppwggp~y~~~~-~~DL~~~~~p~~~~~fk~  202 (263)
T KOG2730|consen  169 VFLSPPWGGPSYLRAD-VYDLETHLKPMGTKIFKS  202 (263)
T ss_pred             eecCCCCCCcchhhhh-hhhhhhhcchhHHHHHHh
Confidence            8876543333222322 335677777777666665

>COG0116 Predicted N6-adenine-specific DNA methylase [DNA replication, recombination, and repair]

Probab=97.89  E-value=3e-05  Score=74.47  Aligned_cols=82  Identities=15%  Similarity=0.166  Sum_probs=62.6

Q ss_pred             EEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEccccchhhcCCCcceeehhhhccC----C---hhHHHHHHHHHHhhc
Q 042119          158 HFDNFDIDEAANDVARSIVASDAEFEGRMKFLTRDIMEVKEQLGEYDCIFLAALVGM----S---KEEKLTILGHIRKYM  230 (286)
Q Consensus       158 ~V~~iDid~~ai~~Ar~~~~~~g~l~~~i~f~~~D~~~~~~~l~~fD~V~~aalvg~----~---~~~k~~vl~~l~~~l  230 (286)
                      .+.|+|+|+.+++.|+.+++++| +++.|+|.++|+.++..+...+|+|+..---|.    .   ..-+..+.+.+.+.+
T Consensus       256 ~~~G~Did~r~i~~Ak~NA~~AG-v~d~I~f~~~d~~~l~~~~~~~gvvI~NPPYGeRlg~~~~v~~LY~~fg~~lk~~~  334 (381)
T COG0116         256 IIYGSDIDPRHIEGAKANARAAG-VGDLIEFKQADATDLKEPLEEYGVVISNPPYGERLGSEALVAKLYREFGRTLKRLL  334 (381)
T ss_pred             eEEEecCCHHHHHHHHHHHHhcC-CCceEEEEEcchhhCCCCCCcCCEEEeCCCcchhcCChhhHHHHHHHHHHHHHHHh
Confidence            37899999999999999999999 899999999999998877678999986532111    1   113444555666777


Q ss_pred             cCCcEEEEee
Q 042119          231 KDGGILLVRS  240 (286)
Q Consensus       231 ~pgg~lv~r~  240 (286)
                      +--++.|+.+
T Consensus       335 ~~ws~~v~tt  344 (381)
T COG0116         335 AGWSRYVFTT  344 (381)
T ss_pred             cCCceEEEEc
Confidence            7667777765

>PF01728 FtsJ: FtsJ-like methyltransferase; InterPro: IPR002877 RrmJ (FtsJ) is a well conserved heat shock protein present in prokaryotes, archaea, and eukaryotes

Probab=97.89  E-value=4.3e-05  Score=65.64  Aligned_cols=121  Identities=21%  Similarity=0.312  Sum_probs=73.3

Q ss_pred             CCCEEEEeccCCChhhHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEccccchh------hcC---
Q 042119          130 QPKKVAFVGSGPMPLTSIIMAKHHLTSTHFDNFDIDEAANDVARSIVASDAEFEGRMKFLTRDIMEVK------EQL---  200 (286)
Q Consensus       130 ~~~~VL~IG~G~lp~tai~lA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~g~l~~~i~f~~~D~~~~~------~~l---  200 (286)
                      .+.+|+|+||+|+|.|...+.+ ..+.++|+|+|+.+.           ..  -..+.++++|..+..      ..+   
T Consensus        23 ~~~~vlDlG~aPGGws~~~~~~-~~~~~~v~avDl~~~-----------~~--~~~~~~i~~d~~~~~~~~~i~~~~~~~   88 (181)
T PF01728_consen   23 KGFTVLDLGAAPGGWSQVLLQR-GGPAGRVVAVDLGPM-----------DP--LQNVSFIQGDITNPENIKDIRKLLPES   88 (181)
T ss_dssp             TTEEEEEET-TTSHHHHHHHTS-TTTEEEEEEEESSST-----------GS---TTEEBTTGGGEEEEHSHHGGGSHGTT
T ss_pred             cccEEEEcCCcccceeeeeeec-ccccceEEEEecccc-----------cc--ccceeeeecccchhhHHHhhhhhcccc
Confidence            5599999999999999877655 235799999999987           22  145777777776421      111   


Q ss_pred             -CCcceeehhhh--c-cC-------ChhHHHHHHHHHHhhccCCcEEEEeecCcce--eeecccCCcccc-cCcEEEEEe
Q 042119          201 -GEYDCIFLAAL--V-GM-------SKEEKLTILGHIRKYMKDGGILLVRSAKGAR--AFLYPVVVEHDL-LDFEVLSAV  266 (286)
Q Consensus       201 -~~fD~V~~aal--v-g~-------~~~~k~~vl~~l~~~l~pgg~lv~r~~~g~r--~~lyp~v~~~~l-~gf~~~~~~  266 (286)
                       +.||+|+.+..  + |.       ..+--...+.-..+.|+|||.+++.-.++..  .+++      .+ ..|+.+.++
T Consensus        89 ~~~~dlv~~D~~~~~~g~~~~d~~~~~~l~~~~l~~a~~~L~~gG~~v~K~~~~~~~~~~~~------~l~~~F~~v~~~  162 (181)
T PF01728_consen   89 GEKFDLVLSDMAPNVSGDRNIDEFISIRLILSQLLLALELLKPGGTFVIKVFKGPEIEELIY------LLKRCFSKVKIV  162 (181)
T ss_dssp             TCSESEEEE-------SSHHSSHHHHHHHHHHHHHHHHHHHCTTEEEEEEESSSTTSHHHHH------HHHHHHHHEEEE
T ss_pred             ccCcceeccccccCCCCchhhHHHHHHHHHHHHHHHHHhhhcCCCEEEEEeccCccHHHHHH------HHHhCCeEEEEE
Confidence             36999987761  1 11       0122334455556778999999987644311  1111      11 367777777


Q ss_pred             cCcc
Q 042119          267 HPND  270 (286)
Q Consensus       267 ~P~~  270 (286)
                      .|..
T Consensus       163 Kp~~  166 (181)
T PF01728_consen  163 KPPS  166 (181)
T ss_dssp             E-TT
T ss_pred             ECcC
Confidence            7654

RrmJ is responsible for methylating 23 S rRNA at position U2552 in the aminoacyl (A)1-site of the ribosome []. U2552 is one of the five universally conserved A-loop residues and has been shown to be methylated at the ribose 2'-OH group in the majority of organisms investigated so far. This suggests that this modification plays an important role in the A-loop function. RrmJ recognises its methylation target only when the 23 S rRNA is present in 50 S ribosomal subunits. This suggests that the RrmJ-mediated methylation must occur late in the maturation process of the ribosome. This is in contrast to other known 23 S rRNA modifications that occur in earlier maturation steps. The 1.5 A crystal structure of RrmJ in complex with its cofactor S-adenosylmethionine revealed that RrmJ has a methyltransferase fold. The active site of RrmJ appears to be formed by a catalytic triad consisting of two lysine residues and the negatively charged aspartate residue. Another highly conserved glutamate residue that is present in the active site of RrmJ appears to play only a minor role in the methyltransfer reaction in vivo []. ; GO: 0003676 nucleic acid binding, 0008168 methyltransferase activity, 0032259 methylation; PDB: 3GCZ_A 2PLW_A 2NYU_A 2OXT_C 3EMD_A 3ELY_A 3ELW_A 3ELU_A 3ELD_A 3EMB_A ....

>PF04672 Methyltransf_19: S-adenosyl methyltransferase; InterPro: IPR006764 This is a family of uncharacterised proteins

Probab=97.86  E-value=6e-05  Score=69.33  Aligned_cols=107  Identities=21%  Similarity=0.347  Sum_probs=66.2

Q ss_pred             CCEEEEeccCCChhhH--HHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEccccchhhcC------CC
Q 042119          131 PKKVAFVGSGPMPLTS--IIMAKHHLTSTHFDNFDIDEAANDVARSIVASDAEFEGRMKFLTRDIMEVKEQL------GE  202 (286)
Q Consensus       131 ~~~VL~IG~G~lp~ta--i~lA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~g~l~~~i~f~~~D~~~~~~~l------~~  202 (286)
                      =+..|||||| +|..-  =-+|++..|+++|+-+|.||-.++.||.++.....  .+..++.+|+.+...-+      +-
T Consensus        69 IrQFLDlGsG-lPT~~nvHevAq~~~P~aRVVYVD~DPvv~ah~ralL~~~~~--g~t~~v~aD~r~p~~iL~~p~~~~~  145 (267)
T PF04672_consen   69 IRQFLDLGSG-LPTAGNVHEVAQRVAPDARVVYVDNDPVVLAHARALLADNPR--GRTAYVQADLRDPEAILAHPEVRGL  145 (267)
T ss_dssp             --EEEEET---S--SS-HHHHHHHH-TT-EEEEEESSHHHHHCCHHHHTT-TT--SEEEEEE--TT-HHHHHCSHHHHCC
T ss_pred             cceEEEcccC-CCCCCCHhHHHHhhCCCceEEEECCCchHHHHHHhhhcCCCC--ccEEEEeCCCCCHHHHhcCHHHHhc
Confidence            3789999999 88543  23455567999999999999999999999775441  35899999998743211      11


Q ss_pred             cc------eeehhhhccC-ChhHHHHHHHHHHhhccCCcEEEEee
Q 042119          203 YD------CIFLAALVGM-SKEEKLTILGHIRKYMKDGGILLVRS  240 (286)
Q Consensus       203 fD------~V~~aalvg~-~~~~k~~vl~~l~~~l~pgg~lv~r~  240 (286)
                      +|      +.+++.+... +.++...++..++..|.||..|++..
T Consensus       146 lD~~rPVavll~~vLh~v~D~~dp~~iv~~l~d~lapGS~L~ish  190 (267)
T PF04672_consen  146 LDFDRPVAVLLVAVLHFVPDDDDPAGIVARLRDALAPGSYLAISH  190 (267)
T ss_dssp             --TTS--EEEECT-GGGS-CGCTHHHHHHHHHCCS-TT-EEEEEE
T ss_pred             CCCCCCeeeeeeeeeccCCCccCHHHHHHHHHHhCCCCceEEEEe
Confidence            33      3344433322 44677899999999999999999974

; PDB: 3GIW_A 3GO4_A 2QE6_A.

>KOG1500 consensus Protein arginine N-methyltransferase CARM1 [Posttranslational modification, protein turnover, chaperones; Transcription]

Probab=97.86  E-value=0.00012  Score=69.17  Aligned_cols=107  Identities=23%  Similarity=0.317  Sum_probs=78.7

Q ss_pred             hcCCCCCCEEEEeccCCChhhHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEccccchhhcCCCcc
Q 042119          125 ENGVVQPKKVAFVGSGPMPLTSIIMAKHHLTSTHFDNFDIDEAANDVARSIVASDAEFEGRMKFLTRDIMEVKEQLGEYD  204 (286)
Q Consensus       125 ~~~~~~~~~VL~IG~G~lp~tai~lA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~g~l~~~i~f~~~D~~~~~~~l~~fD  204 (286)
                      .+..-.++-|+|||||. |.-+..-|++  ...+|.+++-| +|.+.||++++... +.+||+.+.|-+.++..+ ++.|
T Consensus       172 N~sDF~~kiVlDVGaGS-GILS~FAaqA--GA~~vYAvEAS-~MAqyA~~Lv~~N~-~~~rItVI~GKiEdieLP-Ek~D  245 (517)
T KOG1500|consen  172 NHSDFQDKIVLDVGAGS-GILSFFAAQA--GAKKVYAVEAS-EMAQYARKLVASNN-LADRITVIPGKIEDIELP-EKVD  245 (517)
T ss_pred             cccccCCcEEEEecCCc-cHHHHHHHHh--CcceEEEEehh-HHHHHHHHHHhcCC-ccceEEEccCccccccCc-hhcc
Confidence            33345788999999996 7777766662  44689999998 88999999999887 899999999999876543 4789


Q ss_pred             eeehhhhccC-ChhHHHHHHHHHHhhccCCcEEE
Q 042119          205 CIFLAALVGM-SKEEKLTILGHIRKYMKDGGILL  237 (286)
Q Consensus       205 ~V~~aalvg~-~~~~k~~vl~~l~~~l~pgg~lv  237 (286)
                      +++-.-+=-| --|.-.+-.-+.++.|+|.|...
T Consensus       246 viISEPMG~mL~NERMLEsYl~Ark~l~P~GkMf  279 (517)
T KOG1500|consen  246 VIISEPMGYMLVNERMLESYLHARKWLKPNGKMF  279 (517)
T ss_pred             EEEeccchhhhhhHHHHHHHHHHHhhcCCCCccc
Confidence            9874422111 11333445556789999999753

>COG0500 SmtA SAM-dependent methyltransferases [Secondary metabolites biosynthesis, transport, and catabolism / General function prediction only]

Probab=97.84  E-value=0.00026  Score=54.32  Aligned_cols=102  Identities=16%  Similarity=0.243  Sum_probs=68.1

Q ss_pred             EEEeccCCChhhHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEccccc--hhhcC-CCcceeehhh
Q 042119          134 VAFVGSGPMPLTSIIMAKHHLTSTHFDNFDIDEAANDVARSIVASDAEFEGRMKFLTRDIME--VKEQL-GEYDCIFLAA  210 (286)
Q Consensus       134 VL~IG~G~lp~tai~lA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~g~l~~~i~f~~~D~~~--~~~~l-~~fD~V~~aa  210 (286)
                      ++++|||++ ... .+++....+..++++|+++.+++.++......+ . ..+.+..+|...  .+... ..||++....
T Consensus        52 ~ld~~~g~g-~~~-~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~-~-~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~  127 (257)
T COG0500          52 VLDIGCGTG-RLA-LLARLGGRGAYVVGVDLSPEMLALARARAEGAG-L-GLVDFVVADALGGVLPFEDSASFDLVISLL  127 (257)
T ss_pred             eEEecCCcC-HHH-HHHHhCCCCceEEEEeCCHHHHHHHHhhhhhcC-C-CceEEEEeccccCCCCCCCCCceeEEeeee
Confidence            999999964 433 444411122589999999999999666554422 1 117888888765  33332 2699983332


Q ss_pred             hccCChhHHHHHHHHHHhhccCCcEEEEeec
Q 042119          211 LVGMSKEEKLTILGHIRKYMKDGGILLVRSA  241 (286)
Q Consensus       211 lvg~~~~~k~~vl~~l~~~l~pgg~lv~r~~  241 (286)
                      ...+. . ....+.++.+.++|+|.+++...
T Consensus       128 ~~~~~-~-~~~~~~~~~~~l~~~g~~~~~~~  156 (257)
T COG0500         128 VLHLL-P-PAKALRELLRVLKPGGRLVLSDL  156 (257)
T ss_pred             ehhcC-C-HHHHHHHHHHhcCCCcEEEEEec
Confidence            22211 1 67899999999999999988763

>KOG0820 consensus Ribosomal RNA adenine dimethylase [RNA processing and modification]

Probab=97.80  E-value=0.00011  Score=67.69  Aligned_cols=81  Identities=19%  Similarity=0.256  Sum_probs=67.1

Q ss_pred             HHHHhcCCCCCCEEEEeccCCChhhHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEccccchhhcC
Q 042119          121 TILSENGVVQPKKVAFVGSGPMPLTSIIMAKHHLTSTHFDNFDIDEAANDVARSIVASDAEFEGRMKFLTRDIMEVKEQL  200 (286)
Q Consensus       121 ~~l~~~~~~~~~~VL~IG~G~lp~tai~lA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~g~l~~~i~f~~~D~~~~~~~l  200 (286)
                      +.+.++..++++.||+||-||+-+|--+|-    .|.+|+++++||.+++.-.+.++-.. .+.+.+.+.||...  .++
T Consensus        49 ~I~~ka~~k~tD~VLEvGPGTGnLT~~lLe----~~kkVvA~E~Dprmvael~krv~gtp-~~~kLqV~~gD~lK--~d~  121 (315)
T KOG0820|consen   49 QIVEKADLKPTDVVLEVGPGTGNLTVKLLE----AGKKVVAVEIDPRMVAELEKRVQGTP-KSGKLQVLHGDFLK--TDL  121 (315)
T ss_pred             HHHhccCCCCCCEEEEeCCCCCHHHHHHHH----hcCeEEEEecCcHHHHHHHHHhcCCC-ccceeeEEeccccc--CCC
Confidence            345577889999999999999877766654    58999999999999999999988877 67899999999954  455


Q ss_pred             CCcceeeh
Q 042119          201 GEYDCIFL  208 (286)
Q Consensus       201 ~~fD~V~~  208 (286)
                      ..||.++-
T Consensus       122 P~fd~cVs  129 (315)
T KOG0820|consen  122 PRFDGCVS  129 (315)
T ss_pred             cccceeec
Confidence            67888764

>PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional

Probab=97.78  E-value=0.00015  Score=75.41  Aligned_cols=84  Identities=17%  Similarity=0.235  Sum_probs=59.1

Q ss_pred             cEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEccccchhhcC--CCcceeehhhhccC---ChhHHHHHHHHHHhhc-
Q 042119          157 THFDNFDIDEAANDVARSIVASDAEFEGRMKFLTRDIMEVKEQL--GEYDCIFLAALVGM---SKEEKLTILGHIRKYM-  230 (286)
Q Consensus       157 ~~V~~iDid~~ai~~Ar~~~~~~g~l~~~i~f~~~D~~~~~~~l--~~fD~V~~aalvg~---~~~~k~~vl~~l~~~l-  230 (286)
                      .+++|+|+|+++++.|++++...| +.++|+|.++|+.++....  +.||+|+..---|.   ..++-.++...+.+.+ 
T Consensus       257 ~~i~G~Did~~av~~A~~N~~~~g-~~~~i~~~~~D~~~~~~~~~~~~~d~IvtNPPYg~r~~~~~~l~~lY~~lg~~lk  335 (702)
T PRK11783        257 SKFYGSDIDPRVIQAARKNARRAG-VAELITFEVKDVADLKNPLPKGPTGLVISNPPYGERLGEEPALIALYSQLGRRLK  335 (702)
T ss_pred             ceEEEEECCHHHHHHHHHHHHHcC-CCcceEEEeCChhhcccccccCCCCEEEECCCCcCccCchHHHHHHHHHHHHHHH
Confidence            379999999999999999999999 7889999999998875443  35999876532111   1122233444444444 


Q ss_pred             --cCCcEEEEeec
Q 042119          231 --KDGGILLVRSA  241 (286)
Q Consensus       231 --~pgg~lv~r~~  241 (286)
                        .+|+.+.+-++
T Consensus       336 ~~~~g~~~~llt~  348 (702)
T PRK11783        336 QQFGGWNAALFSS  348 (702)
T ss_pred             HhCCCCeEEEEeC
Confidence              48887766543

>PF05891 Methyltransf_PK: AdoMet dependent proline di-methyltransferase; InterPro: IPR008576 This family consists of several eukaryotic proteins of unknown function that are S-adenosyl-L-methionine-dependent methyltransferase-like

Probab=97.77  E-value=9.9e-05  Score=65.94  Aligned_cols=106  Identities=16%  Similarity=0.263  Sum_probs=74.0

Q ss_pred             CCCEEEEeccCCChhhHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEccccchhhcCCCcceeehh
Q 042119          130 QPKKVAFVGSGPMPLTSIIMAKHHLTSTHFDNFDIDEAANDVARSIVASDAEFEGRMKFLTRDIMEVKEQLGEYDCIFLA  209 (286)
Q Consensus       130 ~~~~VL~IG~G~lp~tai~lA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~g~l~~~i~f~~~D~~~~~~~l~~fD~V~~a  209 (286)
                      ...+.||.|+|-+-.|--+|.+   .=-+|..+|..+.-++.|++.+...+  ....++.+.-..++..+.+.||+||+-
T Consensus        55 ~~~~alDcGAGIGRVTk~lLl~---~f~~VDlVEp~~~Fl~~a~~~l~~~~--~~v~~~~~~gLQ~f~P~~~~YDlIW~Q  129 (218)
T PF05891_consen   55 KFNRALDCGAGIGRVTKGLLLP---VFDEVDLVEPVEKFLEQAKEYLGKDN--PRVGEFYCVGLQDFTPEEGKYDLIWIQ  129 (218)
T ss_dssp             --SEEEEET-TTTHHHHHTCCC---C-SEEEEEES-HHHHHHHHHHTCCGG--CCEEEEEES-GGG----TT-EEEEEEE
T ss_pred             CcceEEecccccchhHHHHHHH---hcCEeEEeccCHHHHHHHHHHhcccC--CCcceEEecCHhhccCCCCcEeEEEeh
Confidence            4579999999955555455555   23689999999999999998755422  234588888887776655689999975


Q ss_pred             hhc-cCChhHHHHHHHHHHhhccCCcEEEEee
Q 042119          210 ALV-GMSKEEKLTILGHIRKYMKDGGILLVRS  240 (286)
Q Consensus       210 alv-g~~~~~k~~vl~~l~~~l~pgg~lv~r~  240 (286)
                      =.+ ..+.++-.++|.+....|+|||+|++.+
T Consensus       130 W~lghLTD~dlv~fL~RCk~~L~~~G~IvvKE  161 (218)
T PF05891_consen  130 WCLGHLTDEDLVAFLKRCKQALKPNGVIVVKE  161 (218)
T ss_dssp             S-GGGS-HHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred             HhhccCCHHHHHHHHHHHHHhCcCCcEEEEEe
Confidence            333 4577889999999999999999999986

; GO: 0008168 methyltransferase activity; PDB: 1XTP_A 2EX4_B.

>COG0030 KsgA Dimethyladenosine transferase (rRNA methylation) [Translation, ribosomal structure and biogenesis]

Probab=97.73  E-value=0.0002  Score=65.78  Aligned_cols=146  Identities=18%  Similarity=0.202  Sum_probs=86.2

Q ss_pred             hcCCCCCCEEEEeccCCChhhHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEccccchhhcC-CCc
Q 042119          125 ENGVVQPKKVAFVGSGPMPLTSIIMAKHHLTSTHFDNFDIDEAANDVARSIVASDAEFEGRMKFLTRDIMEVKEQL-GEY  203 (286)
Q Consensus       125 ~~~~~~~~~VL~IG~G~lp~tai~lA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~g~l~~~i~f~~~D~~~~~~~l-~~f  203 (286)
                      .+.+.+++.|++||+|.+.+|..++ +   .+.+|++|++|+..++.-++...    ..++++.+.+|+..+..+- ..+
T Consensus        25 ~a~~~~~d~VlEIGpG~GaLT~~Ll-~---~~~~v~aiEiD~~l~~~L~~~~~----~~~n~~vi~~DaLk~d~~~l~~~   96 (259)
T COG0030          25 AANISPGDNVLEIGPGLGALTEPLL-E---RAARVTAIEIDRRLAEVLKERFA----PYDNLTVINGDALKFDFPSLAQP   96 (259)
T ss_pred             hcCCCCCCeEEEECCCCCHHHHHHH-h---hcCeEEEEEeCHHHHHHHHHhcc----cccceEEEeCchhcCcchhhcCC
Confidence            4466778999999999888886654 4   57889999999999998888755    2368999999997654431 156


Q ss_pred             ceeehhhhccCChhHHHHHHHHHHhhccC--CcEEEEee-------c-CcceeeecccCCc---ccc-cCcEEE-EEecC
Q 042119          204 DCIFLAALVGMSKEEKLTILGHIRKYMKD--GGILLVRS-------A-KGARAFLYPVVVE---HDL-LDFEVL-SAVHP  268 (286)
Q Consensus       204 D~V~~aalvg~~~~~k~~vl~~l~~~l~p--gg~lv~r~-------~-~g~r~~lyp~v~~---~~l-~gf~~~-~~~~P  268 (286)
                      +.|+. .+ ......  .++.++...=.+  +.++++.-       + .|.+.+-.-.+-.   .+. .-|.+= ..++|
T Consensus        97 ~~vVa-Nl-PY~Iss--pii~kll~~~~~~~~~v~M~QkEva~Rl~A~pgsk~Yg~LsV~~q~~~~v~~~~~Vpp~~F~P  172 (259)
T COG0030          97 YKVVA-NL-PYNISS--PILFKLLEEKFIIQDMVLMVQKEVAERLVAKPGSKDYGRLSVLVQYYADVEIVFDVPPSAFYP  172 (259)
T ss_pred             CEEEE-cC-CCcccH--HHHHHHHhccCccceEEEEeHHHHHHHHhCCCCCcccchhhhhhhheEEEEEEEEEChhhCCC
Confidence            77662 22 111122  244444443222  44555532       1 1211111110000   011 112222 45688


Q ss_pred             cccceeeeEEEeec
Q 042119          269 NDDVINSVVLVRNS  282 (286)
Q Consensus       269 ~~~vinsvi~~r~~  282 (286)
                      -++|--+||..+++
T Consensus       173 ~PkVdSavv~L~~~  186 (259)
T COG0030         173 PPKVDSAVVRLVPK  186 (259)
T ss_pred             CCCccEEEEEEEeC
Confidence            89999888887763

>TIGR03439 methyl_EasF probable methyltransferase domain, EasF family

Probab=97.73  E-value=0.00069  Score=64.09  Aligned_cols=166  Identities=14%  Similarity=0.194  Sum_probs=107.3

Q ss_pred             hhHHHHHHHHhcC------CCCCCEEEEeccCCChhhHHHHHhh--cCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCe
Q 042119          115 LSKLEYTILSENG------VVQPKKVAFVGSGPMPLTSIIMAKH--HLTSTHFDNFDIDEAANDVARSIVASDAEFEGRM  186 (286)
Q Consensus       115 l~~~E~~~l~~~~------~~~~~~VL~IG~G~lp~tai~lA~~--~~~g~~V~~iDid~~ai~~Ar~~~~~~g~l~~~i  186 (286)
                      ..+.|..+|.++.      +.++..++++|||.+-=|.++|..-  .....+.+.+|+|.++++.+.+.+.... + ..+
T Consensus        55 ptr~E~~iL~~~~~~Ia~~i~~~~~lIELGsG~~~Kt~~LL~aL~~~~~~~~Y~plDIS~~~L~~a~~~L~~~~-~-p~l  132 (319)
T TIGR03439        55 LTNDEIEILKKHSSDIAASIPSGSMLVELGSGNLRKVGILLEALERQKKSVDYYALDVSRSELQRTLAELPLGN-F-SHV  132 (319)
T ss_pred             ChHHHHHHHHHHHHHHHHhcCCCCEEEEECCCchHHHHHHHHHHHhcCCCceEEEEECCHHHHHHHHHhhhhcc-C-CCe
Confidence            4566666665543      3567799999999866666666542  1235789999999999999999887222 1 234


Q ss_pred             EE--EEccccchhhc-----C-CCcceeeh-hhhccC-ChhHHHHHHHHHHh-hccCCcEEEEee---------------
Q 042119          187 KF--LTRDIMEVKEQ-----L-GEYDCIFL-AALVGM-SKEEKLTILGHIRK-YMKDGGILLVRS---------------  240 (286)
Q Consensus       187 ~f--~~~D~~~~~~~-----l-~~fD~V~~-aalvg~-~~~~k~~vl~~l~~-~l~pgg~lv~r~---------------  240 (286)
                      ++  ++||-.+...-     . ....++++ -+.+|. +.++...+|..+++ .|+||+.+++--               
T Consensus       133 ~v~~l~gdy~~~l~~l~~~~~~~~~r~~~flGSsiGNf~~~ea~~fL~~~~~~~l~~~d~lLiG~D~~k~~~~l~~AY~d  212 (319)
T TIGR03439       133 RCAGLLGTYDDGLAWLKRPENRSRPTTILWLGSSIGNFSRPEAAAFLAGFLATALSPSDSFLIGLDGCKDPDKVLRAYND  212 (319)
T ss_pred             EEEEEEecHHHHHhhcccccccCCccEEEEeCccccCCCHHHHHHHHHHHHHhhCCCCCEEEEecCCCCCHHHHHHHhcC
Confidence            44  88887653221     1 23566654 456654 67788899999999 999999988831               


Q ss_pred             cCcc-eeeec-------ccCCc--ccccCcEEEEEecCcccceeeeEEEeec
Q 042119          241 AKGA-RAFLY-------PVVVE--HDLLDFEVLSAVHPNDDVINSVVLVRNS  282 (286)
Q Consensus       241 ~~g~-r~~ly-------p~v~~--~~l~gf~~~~~~~P~~~vinsvi~~r~~  282 (286)
                      ..|. ++|+-       ....-  -++..|+-...+.|...-|...+++++.
T Consensus       213 ~~gvTa~FnlN~L~~~Nr~Lg~~~Fd~~~f~h~a~~n~~~~rie~~l~s~~~  264 (319)
T TIGR03439       213 PGGVTRRFVLNGLVHANEILGSEAFREEDWEFLGEWDEELGRHEAFYIPKKD  264 (319)
T ss_pred             CcchhHHHHHHHHHHHHHHhCccccCHHHcEEEEEEcCCCCeEEEEEEeCCc
Confidence            1222 11210       00010  1234688888888887777777777653

This model represents an uncharacterized domain of about 300 amino acids with homology to S-adenosylmethionine-dependent methyltransferases. Proteins with this domain are exclusively fungal. A few, such as EasF from Neotyphodium lolii, are associated with the biosynthesis of ergot alkaloids, a class of fungal secondary metabolites. EasF may, in fact, be the AdoMet:dimethylallyltryptophan N-methyltransferase, the enzyme that follows tryptophan dimethylallyltransferase (DMATS) in ergot alkaloid biosynthesis. Several other members of this family, including mug158 (meiotically up-regulated gene 158 protein) from Schizosaccharomyces pombe, contain an additional uncharacterized domain DUF323 (pfam03781).

>COG4076 Predicted RNA methylase [General function prediction only]

Probab=97.72  E-value=0.00011  Score=64.42  Aligned_cols=140  Identities=15%  Similarity=0.256  Sum_probs=95.2

Q ss_pred             CCEEEEeccCCChhhHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEccccchhhcCCCcceeehh-
Q 042119          131 PKKVAFVGSGPMPLTSIIMAKHHLTSTHFDNFDIDEAANDVARSIVASDAEFEGRMKFLTRDIMEVKEQLGEYDCIFLA-  209 (286)
Q Consensus       131 ~~~VL~IG~G~lp~tai~lA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~g~l~~~i~f~~~D~~~~~~~l~~fD~V~~a-  209 (286)
                      ...+.|+|.|.++++ ..-|+   ..-+|.+|+.||...++|.+++.-.|+  .+++.+++|+.+..+  ...|+|+.. 
T Consensus        33 ~d~~~DLGaGsGiLs-~~Aa~---~A~rViAiE~dPk~a~~a~eN~~v~g~--~n~evv~gDA~~y~f--e~ADvvicEm  104 (252)
T COG4076          33 EDTFADLGAGSGILS-VVAAH---AAERVIAIEKDPKRARLAEENLHVPGD--VNWEVVVGDARDYDF--ENADVVICEM  104 (252)
T ss_pred             hhceeeccCCcchHH-HHHHh---hhceEEEEecCcHHHHHhhhcCCCCCC--cceEEEecccccccc--cccceeHHHH
Confidence            478999999986665 44444   467899999999999999999987785  799999999976444  568988643 


Q ss_pred             ---hhccCChhHHHHHHHHHHhhccCCcEEEEee----cC----cceeeecccCCc-ccccC---cEEEEEecCccccee
Q 042119          210 ---ALVGMSKEEKLTILGHIRKYMKDGGILLVRS----AK----GARAFLYPVVVE-HDLLD---FEVLSAVHPNDDVIN  274 (286)
Q Consensus       210 ---alvg~~~~~k~~vl~~l~~~l~pgg~lv~r~----~~----g~r~~lyp~v~~-~~l~g---f~~~~~~~P~~~vin  274 (286)
                         +++   .+....++..+.+.|+-++.++=..    ++    .++...|..--+ ++...   ++++.-..|.++|.|
T Consensus       105 lDTaLi---~E~qVpV~n~vleFLr~d~tiiPq~v~~~a~pv~~~~~~i~Yde~l~se~~~p~~iye~v~f~k~~PEvy~  181 (252)
T COG4076         105 LDTALI---EEKQVPVINAVLEFLRYDPTIIPQEVRIGANPVRRPPRTIRYDEGLPSEDIEPEVIYEVVRFDKPIPEVYN  181 (252)
T ss_pred             hhHHhh---cccccHHHHHHHHHhhcCCccccHHHhhccCccccCCcccccCCCCCccccCcceeEEEEeccCCCchhhc
Confidence               233   2556679999999999999987532    22    233444443212 23222   444443446777877


Q ss_pred             eeEEEee
Q 042119          275 SVVLVRN  281 (286)
Q Consensus       275 svi~~r~  281 (286)
                      --.=.++
T Consensus       182 ~~lele~  188 (252)
T COG4076         182 KKLELET  188 (252)
T ss_pred             ceeEEec
Confidence            4443333

>PF06962 rRNA_methylase: Putative rRNA methylase; InterPro: IPR010719 This family contains a number of putative rRNA methylases

Probab=97.71  E-value=0.0002  Score=59.86  Aligned_cols=85  Identities=24%  Similarity=0.339  Sum_probs=63.0

Q ss_pred             EEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEccccchhhcCC--Ccceeehhh--hccCC------hhHHHHHHHHHH
Q 042119          158 HFDNFDIDEAANDVARSIVASDAEFEGRMKFLTRDIMEVKEQLG--EYDCIFLAA--LVGMS------KEEKLTILGHIR  227 (286)
Q Consensus       158 ~V~~iDid~~ai~~Ar~~~~~~g~l~~~i~f~~~D~~~~~~~l~--~fD~V~~aa--lvg~~------~~~k~~vl~~l~  227 (286)
                      +|.++||-++|++.+++++++.| +.++++++.....++...+.  .+|+|++.-  +-|.|      .+.-...++...
T Consensus         1 kVyaFDIQ~~Ai~~T~~rL~~~~-~~~~v~li~~sHe~l~~~i~~~~v~~~iFNLGYLPggDk~i~T~~~TTl~Al~~al   79 (140)
T PF06962_consen    1 KVYAFDIQEEAIENTRERLEEAG-LEDRVTLILDSHENLDEYIPEGPVDAAIFNLGYLPGGDKSITTKPETTLKALEAAL   79 (140)
T ss_dssp             EEEEEES-HHHHHHHHHHHHHTT--GSGEEEEES-GGGGGGT--S--EEEEEEEESB-CTS-TTSB--HHHHHHHHHHHH
T ss_pred             CEEEEECHHHHHHHHHHHHHhcC-CCCcEEEEECCHHHHHhhCccCCcCEEEEECCcCCCCCCCCCcCcHHHHHHHHHHH
Confidence            58999999999999999999999 78899999999988777554  489887653  11322      244667899999


Q ss_pred             hhccCCcEEEEeecCc
Q 042119          228 KYMKDGGILLVRSAKG  243 (286)
Q Consensus       228 ~~l~pgg~lv~r~~~g  243 (286)
                      +.|+|||++++.-+.|
T Consensus        80 ~lL~~gG~i~iv~Y~G   95 (140)
T PF06962_consen   80 ELLKPGGIITIVVYPG   95 (140)
T ss_dssp             HHEEEEEEEEEEE--S
T ss_pred             HhhccCCEEEEEEeCC
Confidence            9999999998876443

; PDB: 3EEY_H 3LBY_A 3MTI_A.

>cd00401 AdoHcyase S-adenosyl-L-homocysteine hydrolase (AdoHycase) catalyzes the hydrolysis of S-adenosyl-L-homocysteine (AdoHyc) to form adenosine (Ado) and homocysteine (Hcy)

Probab=97.69  E-value=0.00021  Score=69.86  Aligned_cols=108  Identities=16%  Similarity=0.107  Sum_probs=73.0

Q ss_pred             cchhhhhHHHHHHHHhcC--CCCCCEEEEeccCCChhhHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeE
Q 042119          110 GNYVKLSKLEYTILSENG--VVQPKKVAFVGSGPMPLTSIIMAKHHLTSTHFDNFDIDEAANDVARSIVASDAEFEGRMK  187 (286)
Q Consensus       110 ~ny~~l~~~E~~~l~~~~--~~~~~~VL~IG~G~lp~tai~lA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~g~l~~~i~  187 (286)
                      +|-..+.+--+..+.+..  ..++++|+.+|+|++|......++  ..|++|+.+|+||...+.|++    .| . ..+ 
T Consensus       179 dn~~g~g~s~~~~i~r~t~~~l~GktVvViG~G~IG~~va~~ak--~~Ga~ViV~d~d~~R~~~A~~----~G-~-~~~-  249 (413)
T cd00401         179 DNLYGCRESLIDGIKRATDVMIAGKVAVVAGYGDVGKGCAQSLR--GQGARVIVTEVDPICALQAAM----EG-Y-EVM-  249 (413)
T ss_pred             cccchhchhhHHHHHHhcCCCCCCCEEEEECCCHHHHHHHHHHH--HCCCEEEEEECChhhHHHHHh----cC-C-EEc-
Confidence            433333333344444432  258999999999999999998888  478999999999998877765    56 2 111 


Q ss_pred             EEEccccchhhcCCCcceeehhhhccCChhHHHHHHH-HHHhhccCCcEEEEee
Q 042119          188 FLTRDIMEVKEQLGEYDCIFLAALVGMSKEEKLTILG-HIRKYMKDGGILLVRS  240 (286)
Q Consensus       188 f~~~D~~~~~~~l~~fD~V~~aalvg~~~~~k~~vl~-~l~~~l~pgg~lv~r~  240 (286)
                          +..   ....++|+|+.+..      .+ .++. ...+.|++||+++.-.
T Consensus       250 ----~~~---e~v~~aDVVI~atG------~~-~~i~~~~l~~mk~GgilvnvG  289 (413)
T cd00401         250 ----TME---EAVKEGDIFVTTTG------NK-DIITGEHFEQMKDGAIVCNIG  289 (413)
T ss_pred             ----cHH---HHHcCCCEEEECCC------CH-HHHHHHHHhcCCCCcEEEEeC
Confidence                111   22357899987642      22 2444 4588999999998765

The equilibrium lies far on the side of AdoHyc synthesis, but in nature the removal of Ado and Hyc is sufficiently fast, so that the net reaction is in the direction of hydrolysis. Since AdoHyc is a potent inhibitor of S-adenosyl-L-methionine dependent methyltransferases, AdoHycase plays a critical role in the modulation of the activity of various methyltransferases. The enzyme forms homooligomers of 45-50kDa subunits, each binding one molecule of NAD+.

>KOG3191 consensus Predicted N6-DNA-methyltransferase [Translation, ribosomal structure and biogenesis]

Probab=97.68  E-value=0.00068  Score=59.13  Aligned_cols=106  Identities=14%  Similarity=0.231  Sum_probs=75.1

Q ss_pred             CCCEEEEeccCCChhhHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEccccchhhcCCCcceeehh
Q 042119          130 QPKKVAFVGSGPMPLTSIIMAKHHLTSTHFDNFDIDEAANDVARSIVASDAEFEGRMKFLTRDIMEVKEQLGEYDCIFLA  209 (286)
Q Consensus       130 ~~~~VL~IG~G~lp~tai~lA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~g~l~~~i~f~~~D~~~~~~~l~~fD~V~~a  209 (286)
                      .++-+++||||. |.-+-.|++...+++...+.||+|+|.+..++-++..+   -++..+++|..+-... ++.|++++.
T Consensus        43 ~~~i~lEIG~GS-GvvstfL~~~i~~~~~~latDiNp~A~~~Tl~TA~~n~---~~~~~V~tdl~~~l~~-~~VDvLvfN  117 (209)
T KOG3191|consen   43 NPEICLEIGCGS-GVVSTFLASVIGPQALYLATDINPEALEATLETARCNR---VHIDVVRTDLLSGLRN-ESVDVLVFN  117 (209)
T ss_pred             CceeEEEecCCc-chHHHHHHHhcCCCceEEEecCCHHHHHHHHHHHHhcC---CccceeehhHHhhhcc-CCccEEEEC
Confidence            488999999996 56666677767788999999999999999999988877   3688899998765544 567776433


Q ss_pred             h-hc-----------------cCC--hhHHHHHHHHHHhhccCCcEEEEee
Q 042119          210 A-LV-----------------GMS--KEEKLTILGHIRKYMKDGGILLVRS  240 (286)
Q Consensus       210 a-lv-----------------g~~--~~~k~~vl~~l~~~l~pgg~lv~r~  240 (286)
                      - .|                 |..  .+--.+++.++-..|.|.|++.+-.
T Consensus       118 PPYVpt~~~~i~~~~i~~a~aGG~~Gr~v~d~ll~~v~~iLSp~Gv~Ylv~  168 (209)
T KOG3191|consen  118 PPYVPTSDEEIGDEGIASAWAGGKDGREVTDRLLPQVPDILSPRGVFYLVA  168 (209)
T ss_pred             CCcCcCCcccchhHHHHHHHhcCcchHHHHHHHHhhhhhhcCcCceEEeee
Confidence            1 11                 110  0112345556667778888776643

>COG2384 Predicted SAM-dependent methyltransferase [General function prediction only]

Probab=97.67  E-value=0.00085  Score=60.04  Aligned_cols=104  Identities=20%  Similarity=0.181  Sum_probs=79.4

Q ss_pred             CCCCEEEEeccCCChhhHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEccccchhhcCCCcceeeh
Q 042119          129 VQPKKVAFVGSGPMPLTSIIMAKHHLTSTHFDNFDIDEAANDVARSIVASDAEFEGRMKFLTRDIMEVKEQLGEYDCIFL  208 (286)
Q Consensus       129 ~~~~~VL~IG~G~lp~tai~lA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~g~l~~~i~f~~~D~~~~~~~l~~fD~V~~  208 (286)
                      +.+.+++||||-. ++-.+.+-+ ..+-..+++.|+++..++.|.+.+.+.+ +.++++...+|.......-+++|.|.+
T Consensus        15 ~~~~~iaDIGsDH-AYLp~~Lv~-~~~~~~~va~eV~~gpl~~a~~~v~~~~-l~~~i~vr~~dgl~~l~~~d~~d~ivI   91 (226)
T COG2384          15 KQGARIADIGSDH-AYLPIYLVK-NNPASTAVAGEVVPGPLESAIRNVKKNN-LSERIDVRLGDGLAVLELEDEIDVIVI   91 (226)
T ss_pred             HcCCceeeccCch-hHhHHHHHh-cCCcceEEEeecccCHHHHHHHHHHhcC-CcceEEEeccCCccccCccCCcCEEEE
Confidence            5667799999987 455555555 3577899999999999999999999999 899999999999765554457999988


Q ss_pred             hhhccCChhHHHHHHHHHHhhccCCcEEEE
Q 042119          209 AALVGMSKEEKLTILGHIRKYMKDGGILLV  238 (286)
Q Consensus       209 aalvg~~~~~k~~vl~~l~~~l~pgg~lv~  238 (286)
                      |.+ |  -.--.++|++-...++.=-.+++
T Consensus        92 AGM-G--G~lI~~ILee~~~~l~~~~rlIL  118 (226)
T COG2384          92 AGM-G--GTLIREILEEGKEKLKGVERLIL  118 (226)
T ss_pred             eCC-c--HHHHHHHHHHhhhhhcCcceEEE
Confidence            743 2  23446788888887763334444

>PF02737 3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain; InterPro: IPR006176 3-hydroxyacyl-CoA dehydrogenase (1

Probab=97.65  E-value=0.00022  Score=61.85  Aligned_cols=99  Identities=19%  Similarity=0.223  Sum_probs=68.2

Q ss_pred             EEEEeccCCChhhHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHh-------cCCC--------CCCeEEEEccccchh
Q 042119          133 KVAFVGSGPMPLTSIIMAKHHLTSTHFDNFDIDEAANDVARSIVAS-------DAEF--------EGRMKFLTRDIMEVK  197 (286)
Q Consensus       133 ~VL~IG~G~lp~tai~lA~~~~~g~~V~~iDid~~ai~~Ar~~~~~-------~g~l--------~~~i~f~~~D~~~~~  197 (286)
                      +|..||+|.+|-.-..+..  ..|.+|+-+|.|+++++.+++.+++       .|.+        ..++++. .|..   
T Consensus         1 ~V~ViGaG~mG~~iA~~~a--~~G~~V~l~d~~~~~l~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~i~~~-~dl~---   74 (180)
T PF02737_consen    1 KVAVIGAGTMGRGIAALFA--RAGYEVTLYDRSPEALERARKRIERLLDRLVRKGRLSQEEADAALARISFT-TDLE---   74 (180)
T ss_dssp             EEEEES-SHHHHHHHHHHH--HTTSEEEEE-SSHHHHHHHHHHHHHHHHHHHHTTTTTHHHHHHHHHTEEEE-SSGG---
T ss_pred             CEEEEcCCHHHHHHHHHHH--hCCCcEEEEECChHHHHhhhhHHHHHHhhhhhhccchhhhhhhhhhhcccc-cCHH---
Confidence            6899999998865443333  2699999999999999999988765       1211        2456643 3432   


Q ss_pred             hcCCCcceeehhhhccCChhHHHHHHHHHHhhccCCcEEEEee
Q 042119          198 EQLGEYDCIFLAALVGMSKEEKLTILGHIRKYMKDGGILLVRS  240 (286)
Q Consensus       198 ~~l~~fD~V~~aalvg~~~~~k~~vl~~l~~~l~pgg~lv~r~  240 (286)
                       +..+.|+|+.+.  ..+.+-|.+++.++.+.++|+.+|...+
T Consensus        75 -~~~~adlViEai--~E~l~~K~~~~~~l~~~~~~~~ilasnT  114 (180)
T PF02737_consen   75 -EAVDADLVIEAI--PEDLELKQELFAELDEICPPDTILASNT  114 (180)
T ss_dssp             -GGCTESEEEE-S---SSHHHHHHHHHHHHCCS-TTSEEEE--
T ss_pred             -HHhhhheehhhc--cccHHHHHHHHHHHHHHhCCCceEEecC
Confidence             223789999764  2366899999999999999999988865

1.1.35 from EC) (HCDH) [] is an enzyme involved in fatty acid metabolism, it catalyzes the reduction of 3-hydroxyacyl-CoA to 3-oxoacyl-CoA. Most eukaryotic cells have 2 fatty-acid beta-oxidation systems, one located in mitochondria and the other in peroxisomes. In peroxisomes 3-hydroxyacyl-CoA dehydrogenase forms, with enoyl-CoA hydratase (ECH) and 3,2-trans-enoyl-CoA isomerase (ECI) a multifunctional enzyme where the N-terminal domain bears the hydratase/isomerase activities and the C-terminal domain the dehydrogenase activity. There are two mitochondrial enzymes: one which is monofunctional and the other which is, like its peroxisomal counterpart, multifunctional. In Escherichia coli (gene fadB) and Pseudomonas fragi (gene faoA) HCDH is part of a multifunctional enzyme which also contains an ECH/ECI domain as well as a 3-hydroxybutyryl-CoA epimerase domain []. There are two major regions of similarity in the sequences of proteins of the HCDH family, the first one located in the N-terminal, corresponds to the NAD-binding site, the second one is located in the centre of the sequence. This represents the C-terminal domain which is also found in lambda crystallin. Some proteins include two copies of this domain.; GO: 0003857 3-hydroxyacyl-CoA dehydrogenase activity, 0016491 oxidoreductase activity, 0006631 fatty acid metabolic process, 0055114 oxidation-reduction process; PDB: 3K6J_A 1ZCJ_A 2X58_A 1ZEJ_A 3HDH_B 2WTB_A 1WDL_B 2D3T_B 1WDK_A 1WDM_B ....

>TIGR01444 fkbM_fam methyltransferase, FkbM family

Probab=97.64  E-value=0.0002  Score=58.58  Aligned_cols=59  Identities=17%  Similarity=0.159  Sum_probs=50.5

Q ss_pred             EEEEeccCCChhhHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEccccc
Q 042119          133 KVAFVGSGPMPLTSIIMAKHHLTSTHFDNFDIDEAANDVARSIVASDAEFEGRMKFLTRDIME  195 (286)
Q Consensus       133 ~VL~IG~G~lp~tai~lA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~g~l~~~i~f~~~D~~~  195 (286)
                      .++||||| .|..++++++ ..++++|++||.+|++.+.+++.++..| + .+++++...+.+
T Consensus         1 ~vlDiGa~-~G~~~~~~~~-~~~~~~v~~~E~~~~~~~~l~~~~~~n~-~-~~v~~~~~al~~   59 (143)
T TIGR01444         1 VVIDVGAN-IGDTSLYFAR-KGAEGRVIAFEPLPDAYEILEENVKLNN-L-PNVVLLNAAVGD   59 (143)
T ss_pred             CEEEccCC-ccHHHHHHHH-hCCCCEEEEEecCHHHHHHHHHHHHHcC-C-CcEEEEEeeeeC
Confidence            37999999 5788888888 4777899999999999999999999888 4 469999888754

Members of this family are characterized by two well-conserved short regions separated by a variable in both sequence and length. The first of the two regions is found in a large number of proteins outside this subfamily, a number of which have been characterized as methyltransferases. One member of the present family, FkbM, was shown to be required for a specific methylation in the biosynthesis of the immunosuppressant FK506 in Streptomyces strain MA6548.

>PRK10742 putative methyltransferase; Provisional

Probab=97.64  E-value=0.0003  Score=64.17  Aligned_cols=81  Identities=9%  Similarity=0.218  Sum_probs=67.3

Q ss_pred             CCCCCC--EEEEeccCCChhhHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhc------CC-CCCCeEEEEccccchh
Q 042119          127 GVVQPK--KVAFVGSGPMPLTSIIMAKHHLTSTHFDNFDIDEAANDVARSIVASD------AE-FEGRMKFLTRDIMEVK  197 (286)
Q Consensus       127 ~~~~~~--~VL~IG~G~lp~tai~lA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~------g~-l~~~i~f~~~D~~~~~  197 (286)
                      +++++.  +|||.=+| +|-.++.+|.   .|++|+.+|.+|....+-++.++++      +. +..+|+++++|+.+..
T Consensus        83 glk~g~~p~VLD~TAG-lG~Da~~las---~G~~V~~vEr~p~vaalL~dgL~ra~~~~~~~~~~~~ri~l~~~da~~~L  158 (250)
T PRK10742         83 GIKGDYLPDVVDATAG-LGRDAFVLAS---VGCRVRMLERNPVVAALLDDGLARGYADAEIGGWLQERLQLIHASSLTAL  158 (250)
T ss_pred             CCCCCCCCEEEECCCC-ccHHHHHHHH---cCCEEEEEECCHHHHHHHHHHHHHhhhccccchhhhceEEEEeCcHHHHH
Confidence            557777  99999999 6888999998   6999999999999999999998875      31 2368999999998887


Q ss_pred             hcCC-Ccceeehhhh
Q 042119          198 EQLG-EYDCIFLAAL  211 (286)
Q Consensus       198 ~~l~-~fD~V~~aal  211 (286)
                      .... .||+||++-.
T Consensus       159 ~~~~~~fDVVYlDPM  173 (250)
T PRK10742        159 TDITPRPQVVYLDPM  173 (250)
T ss_pred             hhCCCCCcEEEECCC
Confidence            6543 6999998753

>PRK07066 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=97.62  E-value=0.00038  Score=65.86  Aligned_cols=101  Identities=21%  Similarity=0.211  Sum_probs=70.1

Q ss_pred             CCEEEEeccCCChhhHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHH-------hcCC----CCCCeEEEEccccchhhc
Q 042119          131 PKKVAFVGSGPMPLTSIIMAKHHLTSTHFDNFDIDEAANDVARSIVA-------SDAE----FEGRMKFLTRDIMEVKEQ  199 (286)
Q Consensus       131 ~~~VL~IG~G~lp~tai~lA~~~~~g~~V~~iDid~~ai~~Ar~~~~-------~~g~----l~~~i~f~~~D~~~~~~~  199 (286)
                      -++|.+||+|.+|..-.....  ..|.+|+.+|+++++.+.+++.++       +.|.    ...++++.. |   +...
T Consensus         7 i~~VaVIGaG~MG~giA~~~a--~aG~~V~l~D~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~-~---l~~a   80 (321)
T PRK07066          7 IKTFAAIGSGVIGSGWVARAL--AHGLDVVAWDPAPGAEAALRANVANAWPALERQGLAPGASPARLRFVA-T---IEAC   80 (321)
T ss_pred             CCEEEEECcCHHHHHHHHHHH--hCCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCChhhHHhhceecC-C---HHHH
Confidence            478999999998866433322  379999999999999888776543       1220    113445432 2   2234


Q ss_pred             CCCcceeehhhhccCChhHHHHHHHHHHhhccCCcEEEEe
Q 042119          200 LGEYDCIFLAALVGMSKEEKLTILGHIRKYMKDGGILLVR  239 (286)
Q Consensus       200 l~~fD~V~~aalvg~~~~~k~~vl~~l~~~l~pgg~lv~r  239 (286)
                      ..+.|+|+.+.  ..+.+-|..+++++.+.++|+.+|...
T Consensus        81 v~~aDlViEav--pE~l~vK~~lf~~l~~~~~~~aIlaSn  118 (321)
T PRK07066         81 VADADFIQESA--PEREALKLELHERISRAAKPDAIIASS  118 (321)
T ss_pred             hcCCCEEEECC--cCCHHHHHHHHHHHHHhCCCCeEEEEC
Confidence            46789999764  345678999999999999999855443

>PF07279 DUF1442: Protein of unknown function (DUF1442); InterPro: IPR009902 This family consists of several hypothetical Arabidopsis thaliana proteins of around 225 residues in length

Probab=97.58  E-value=0.0012  Score=58.98  Aligned_cols=107  Identities=17%  Similarity=0.142  Sum_probs=78.6

Q ss_pred             CCCCEEEEeccCCCh-hhHHHHHhh-cCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEccc-cchhhcCCCcce
Q 042119          129 VQPKKVAFVGSGPMP-LTSIIMAKH-HLTSTHFDNFDIDEAANDVARSIVASDAEFEGRMKFLTRDI-MEVKEQLGEYDC  205 (286)
Q Consensus       129 ~~~~~VL~IG~G~lp-~tai~lA~~-~~~g~~V~~iDid~~ai~~Ar~~~~~~g~l~~~i~f~~~D~-~~~~~~l~~fD~  205 (286)
                      ...+.++++.|+..+ -|++-||-+ ..+|+++++|-.+++.....++.+...| +.+.++|+.||. .++...+.+.|+
T Consensus        40 ~nAkliVe~~s~g~~~~ttiaLaaAAr~TgGR~vCIvp~~~~~~~~~~~l~~~~-~~~~vEfvvg~~~e~~~~~~~~iDF  118 (218)
T PF07279_consen   40 WNAKLIVEAWSSGGAISTTIALAAAARQTGGRHVCIVPDEQSLSEYKKALGEAG-LSDVVEFVVGEAPEEVMPGLKGIDF  118 (218)
T ss_pred             ccceEEEEEecCCCchHhHHHHHHHHHhcCCeEEEEcCChhhHHHHHHHHhhcc-ccccceEEecCCHHHHHhhccCCCE
Confidence            455788999765333 245555543 5799999999999999999999998888 778889999985 457778889999


Q ss_pred             eehhhhccCChhHHH-HHHHHHHhhccCCcEEEEeec
Q 042119          206 IFLAALVGMSKEEKL-TILGHIRKYMKDGGILLVRSA  241 (286)
Q Consensus       206 V~~aalvg~~~~~k~-~vl~~l~~~l~pgg~lv~r~~  241 (286)
                      ++++.-.    ++.. ++|+. .+.=+.|++++..++
T Consensus       119 ~vVDc~~----~d~~~~vl~~-~~~~~~GaVVV~~Na  150 (218)
T PF07279_consen  119 VVVDCKR----EDFAARVLRA-AKLSPRGAVVVCYNA  150 (218)
T ss_pred             EEEeCCc----hhHHHHHHHH-hccCCCceEEEEecc
Confidence            9988653    5655 66665 333345666666664

The function of this family is unknown.

>cd08237 ribitol-5-phosphate_DH ribitol-5-phosphate dehydrogenase

Probab=97.56  E-value=0.00039  Score=65.49  Aligned_cols=97  Identities=15%  Similarity=0.251  Sum_probs=67.6

Q ss_pred             CCCCCCEEEEeccCCChhhHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEccccchhhcCCCccee
Q 042119          127 GVVQPKKVAFVGSGPMPLTSIIMAKHHLTSTHFDNFDIDEAANDVARSIVASDAEFEGRMKFLTRDIMEVKEQLGEYDCI  206 (286)
Q Consensus       127 ~~~~~~~VL~IG~G~lp~tai~lA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~g~l~~~i~f~~~D~~~~~~~l~~fD~V  206 (286)
                      ...++++||.+|+|++|+.++.+|++...+++|+++|.+++..+.|++    ++.  .   +.. +  +.... .++|+|
T Consensus       160 ~~~~g~~VlV~G~G~vGl~~~~~a~~~~g~~~vi~~~~~~~k~~~a~~----~~~--~---~~~-~--~~~~~-~g~d~v  226 (341)
T cd08237         160 AHKDRNVIGVWGDGNLGYITALLLKQIYPESKLVVFGKHQEKLDLFSF----ADE--T---YLI-D--DIPED-LAVDHA  226 (341)
T ss_pred             CCCCCCEEEEECCCHHHHHHHHHHHHhcCCCcEEEEeCcHhHHHHHhh----cCc--e---eeh-h--hhhhc-cCCcEE
Confidence            356789999999999999998888732446789999999999888875    341  1   111 1  11222 259999


Q ss_pred             ehhhhccCChhHHHHHHHHHHhhccCCcEEEEee
Q 042119          207 FLAALVGMSKEEKLTILGHIRKYMKDGGILLVRS  240 (286)
Q Consensus       207 ~~aalvg~~~~~k~~vl~~l~~~l~pgg~lv~r~  240 (286)
                      |-+.  |..  .....++...+.|++||++++-.
T Consensus       227 iD~~--G~~--~~~~~~~~~~~~l~~~G~iv~~G  256 (341)
T cd08237         227 FECV--GGR--GSQSAINQIIDYIRPQGTIGLMG  256 (341)
T ss_pred             EECC--CCC--ccHHHHHHHHHhCcCCcEEEEEe
Confidence            9654  311  12246778889999999998764

NAD-linked ribitol-5-phosphate dehydrogenase, a member of the MDR/zinc-dependent alcohol dehydrogenase-like family, oxidizes the phosphate ester of ribitol-5-phosphate to xylulose-5-phosphate of the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (

>PF05971 Methyltransf_10: Protein of unknown function (DUF890); InterPro: IPR010286 This family consists of several conserved hypothetical proteins from both eukaryotes and prokaryotes

Probab=97.53  E-value=0.00026  Score=66.25  Aligned_cols=119  Identities=20%  Similarity=0.236  Sum_probs=63.5

Q ss_pred             hhhHHHHHHhcCCCCcccccccC-cCccchhhhhHHHHHHHHhcCCCCCCEEEEeccCCChhhHHHHHhhcCCCcEEEEE
Q 042119           84 LLELEFATFLTKIPQPLNNLSLF-PYYGNYVKLSKLEYTILSENGVVQPKKVAFVGSGPMPLTSIIMAKHHLTSTHFDNF  162 (286)
Q Consensus        84 ~lE~~~A~~l~~~~~p~~~L~~f-py~~ny~~l~~~E~~~l~~~~~~~~~~VL~IG~G~lp~tai~lA~~~~~g~~V~~i  162 (286)
                      +|-.+|.-..-  +-|-+.|-+- |---||..-+..-+... .......-++||||+|+-..=.++-++  ..|++++|.
T Consensus        58 LLk~dfgl~~w--diP~~~LcP~iP~R~nYi~~i~DlL~~~-~~~~~~~v~glDIGTGAscIYpLLg~~--~~~W~fvaT  132 (299)
T PF05971_consen   58 LLKHDFGLDVW--DIPEGRLCPPIPNRLNYIHWIADLLASS-NPGIPEKVRGLDIGTGASCIYPLLGAK--LYGWSFVAT  132 (299)
T ss_dssp             HHHHHH----------TTS----HHHHHHHHHHHHHHHT---TCGCS---EEEEES-TTTTHHHHHHHH--HH--EEEEE
T ss_pred             HHHHhcCCccc--cCCCCCcCCCCchhHHHHHHHHHHhhcc-ccccccceEeecCCccHHHHHHHHhhh--hcCCeEEEe
Confidence            44444443331  4454444432 43347776665432211 011223579999999997776777776  369999999


Q ss_pred             eCChHHHHHHHHHHHhc-CCCCCCeEEEEcccc-chhhcC----CCcceeeh
Q 042119          163 DIDEAANDVARSIVASD-AEFEGRMKFLTRDIM-EVKEQL----GEYDCIFL  208 (286)
Q Consensus       163 Did~~ai~~Ar~~~~~~-g~l~~~i~f~~~D~~-~~~~~l----~~fD~V~~  208 (286)
                      |||+.+++.|++++++. + |+++|+++...-. .+...+    +.||+.+.
T Consensus       133 dID~~sl~~A~~nv~~N~~-L~~~I~l~~~~~~~~i~~~i~~~~e~~dftmC  183 (299)
T PF05971_consen  133 DIDPKSLESARENVERNPN-LESRIELRKQKNPDNIFDGIIQPNERFDFTMC  183 (299)
T ss_dssp             ES-HHHHHHHHHHHHHT-T--TTTEEEEE--ST-SSTTTSTT--S-EEEEEE
T ss_pred             cCCHHHHHHHHHHHHhccc-cccceEEEEcCCccccchhhhcccceeeEEec
Confidence            99999999999999999 7 8999999866432 222211    35888753

The function of members of this family are unknown but are predicted to be SAM-dependent methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 2H00_A.

>PF05148 Methyltransf_8: Hypothetical methyltransferase; InterPro: IPR007823 This family consists of uncharacterised eukaryotic proteins which are related to S-adenosyl-L-methionine-dependent methyltransferases

Probab=97.52  E-value=0.00021  Score=63.61  Aligned_cols=88  Identities=22%  Similarity=0.289  Sum_probs=54.3

Q ss_pred             CCCCEEEEeccCCChhhHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEccccchhhcCCCcceeeh
Q 042119          129 VQPKKVAFVGSGPMPLTSIIMAKHHLTSTHFDNFDIDEAANDVARSIVASDAEFEGRMKFLTRDIMEVKEQLGEYDCIFL  208 (286)
Q Consensus       129 ~~~~~VL~IG~G~lp~tai~lA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~g~l~~~i~f~~~D~~~~~~~l~~fD~V~~  208 (286)
                      .+...|+|.|||-.     .||+....+.+|+.+|.-+.            .   ++  ...+|..++|-+.+..|+|++
T Consensus        71 ~~~~viaD~GCGdA-----~la~~~~~~~~V~SfDLva~------------n---~~--Vtacdia~vPL~~~svDv~Vf  128 (219)
T PF05148_consen   71 PKSLVIADFGCGDA-----KLAKAVPNKHKVHSFDLVAP------------N---PR--VTACDIANVPLEDESVDVAVF  128 (219)
T ss_dssp             -TTS-EEEES-TT------HHHHH--S---EEEEESS-S------------S---TT--EEES-TTS-S--TT-EEEEEE
T ss_pred             CCCEEEEECCCchH-----HHHHhcccCceEEEeeccCC------------C---CC--EEEecCccCcCCCCceeEEEE
Confidence            44579999999963     24443234578999998631            1   33  566999998888788998876


Q ss_pred             h-hhccCChhHHHHHHHHHHhhccCCcEEEEeec
Q 042119          209 A-ALVGMSKEEKLTILGHIRKYMKDGGILLVRSA  241 (286)
Q Consensus       209 a-alvg~~~~~k~~vl~~l~~~l~pgg~lv~r~~  241 (286)
                      + ++.|   .+...++.+..|.|||||.|.+.+.
T Consensus       129 cLSLMG---Tn~~~fi~EA~RvLK~~G~L~IAEV  159 (219)
T PF05148_consen  129 CLSLMG---TNWPDFIREANRVLKPGGILKIAEV  159 (219)
T ss_dssp             ES---S---S-HHHHHHHHHHHEEEEEEEEEEEE
T ss_pred             EhhhhC---CCcHHHHHHHHheeccCcEEEEEEe
Confidence            5 4556   5788999999999999999999874

; GO: 0008168 methyltransferase activity; PDB: 2ZFU_B.

>cd08230 glucose_DH Glucose dehydrogenase

Probab=97.50  E-value=0.00042  Score=65.38  Aligned_cols=97  Identities=14%  Similarity=0.253  Sum_probs=66.9

Q ss_pred             CCCCCEEEEeccCCChhhHHHHHhhcCCCcEEEEEeC---ChHHHHHHHHHHHhcCCCCCCeEEEEccccchhhcCCCcc
Q 042119          128 VVQPKKVAFVGSGPMPLTSIIMAKHHLTSTHFDNFDI---DEAANDVARSIVASDAEFEGRMKFLTRDIMEVKEQLGEYD  204 (286)
Q Consensus       128 ~~~~~~VL~IG~G~lp~tai~lA~~~~~g~~V~~iDi---d~~ai~~Ar~~~~~~g~l~~~i~f~~~D~~~~~~~l~~fD  204 (286)
                      ..++.+|+.+|+|++|+.++.+|++  .|++|++++.   +++..+.+++    +|.  +.+.....|..+ ......||
T Consensus       170 ~~~g~~vlI~G~G~vG~~a~q~ak~--~G~~vi~~~~~~~~~~~~~~~~~----~Ga--~~v~~~~~~~~~-~~~~~~~d  240 (355)
T cd08230         170 TWNPRRALVLGAGPIGLLAALLLRL--RGFEVYVLNRRDPPDPKADIVEE----LGA--TYVNSSKTPVAE-VKLVGEFD  240 (355)
T ss_pred             cCCCCEEEEECCCHHHHHHHHHHHH--cCCeEEEEecCCCCHHHHHHHHH----cCC--EEecCCccchhh-hhhcCCCC
Confidence            4578999999999999999999994  6889999997   6777666654    562  212221112111 11224699


Q ss_pred             eeehhhhccCChhHHHHHHHHHHhhccCCcEEEEee
Q 042119          205 CIFLAALVGMSKEEKLTILGHIRKYMKDGGILLVRS  240 (286)
Q Consensus       205 ~V~~aalvg~~~~~k~~vl~~l~~~l~pgg~lv~r~  240 (286)
                      +||.+..-     +  ..+....+.|++||.+++-.
T Consensus       241 ~vid~~g~-----~--~~~~~~~~~l~~~G~~v~~G  269 (355)
T cd08230         241 LIIEATGV-----P--PLAFEALPALAPNGVVILFG  269 (355)
T ss_pred             EEEECcCC-----H--HHHHHHHHHccCCcEEEEEe
Confidence            99976431     2  26778889999999998754

Glucose dehydrogenase (GlcDH), a member of the medium chain dehydrogenase/zinc-dependent alcohol dehydrogenase-like family, catalyzes the NADP(+)-dependent oxidation of glucose to gluconate, the first step in the Entner-Doudoroff pathway, an alternative to or substitute for glycolysis or the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossman fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contai

>PRK05808 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=97.49  E-value=0.00088  Score=61.66  Aligned_cols=98  Identities=21%  Similarity=0.294  Sum_probs=67.9

Q ss_pred             CEEEEeccCCChhhHHHHHhhcCCCcEEEEEeCChHHHHHHHHHH-------HhcCCCC--------CCeEEEEccccch
Q 042119          132 KKVAFVGSGPMPLTSIIMAKHHLTSTHFDNFDIDEAANDVARSIV-------ASDAEFE--------GRMKFLTRDIMEV  196 (286)
Q Consensus       132 ~~VL~IG~G~lp~tai~lA~~~~~g~~V~~iDid~~ai~~Ar~~~-------~~~g~l~--------~~i~f~~~D~~~~  196 (286)
                      ++|.+||+|.+|.+......  ..|.+|+.+|++++.++.+++.+       .+.|.+.        .++++ +.|.   
T Consensus         4 ~kI~VIG~G~mG~~ia~~la--~~g~~V~~~d~~~~~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~l~~-~~~~---   77 (282)
T PRK05808          4 QKIGVIGAGTMGNGIAQVCA--VAGYDVVMVDISDAAVDRGLATITKSLDRLVKKGKMTEADKEAALARITG-TTDL---   77 (282)
T ss_pred             cEEEEEccCHHHHHHHHHHH--HCCCceEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEE-eCCH---
Confidence            47999999998877555444  36889999999999998776433       2233111        13443 2332   


Q ss_pred             hhcCCCcceeehhhhccCChhHHHHHHHHHHhhccCCcEEEE
Q 042119          197 KEQLGEYDCIFLAALVGMSKEEKLTILGHIRKYMKDGGILLV  238 (286)
Q Consensus       197 ~~~l~~fD~V~~aalvg~~~~~k~~vl~~l~~~l~pgg~lv~  238 (286)
                       ...++.|+|+.+.-  -+.+-|.+++.++.+.++|+.+|+.
T Consensus        78 -~~~~~aDlVi~av~--e~~~~k~~~~~~l~~~~~~~~il~s  116 (282)
T PRK05808         78 -DDLKDADLVIEAAT--ENMDLKKKIFAQLDEIAKPEAILAT  116 (282)
T ss_pred             -HHhccCCeeeeccc--ccHHHHHHHHHHHHhhCCCCcEEEE
Confidence             23467999998753  2346788999999999999987744

>TIGR02822 adh_fam_2 zinc-binding alcohol dehydrogenase family protein

Probab=97.46  E-value=0.00072  Score=63.46  Aligned_cols=97  Identities=15%  Similarity=0.137  Sum_probs=69.4

Q ss_pred             HHhcCCCCCCEEEEeccCCChhhHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEccccchhhcCCC
Q 042119          123 LSENGVVQPKKVAFVGSGPMPLTSIIMAKHHLTSTHFDNFDIDEAANDVARSIVASDAEFEGRMKFLTRDIMEVKEQLGE  202 (286)
Q Consensus       123 l~~~~~~~~~~VL~IG~G~lp~tai~lA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~g~l~~~i~f~~~D~~~~~~~l~~  202 (286)
                      +.+...+++++||..|+|++|..++.+|+.  .|++|+++|.+++..+.|++    +| ...-++     ..+  ...+.
T Consensus       158 ~~~~~~~~g~~VlV~G~g~iG~~a~~~a~~--~G~~vi~~~~~~~~~~~a~~----~G-a~~vi~-----~~~--~~~~~  223 (329)
T TIGR02822       158 LLRASLPPGGRLGLYGFGGSAHLTAQVALA--QGATVHVMTRGAAARRLALA----LG-AASAGG-----AYD--TPPEP  223 (329)
T ss_pred             HHhcCCCCCCEEEEEcCCHHHHHHHHHHHH--CCCeEEEEeCChHHHHHHHH----hC-Cceecc-----ccc--cCccc
Confidence            334456889999999999999999999994  78999999999998776665    56 221111     111  11135


Q ss_pred             cceeehhhhccCChhHHHHHHHHHHhhccCCcEEEEee
Q 042119          203 YDCIFLAALVGMSKEEKLTILGHIRKYMKDGGILLVRS  240 (286)
Q Consensus       203 fD~V~~aalvg~~~~~k~~vl~~l~~~l~pgg~lv~r~  240 (286)
                      +|+++.+..++       ..+....+.+++||++++-.
T Consensus       224 ~d~~i~~~~~~-------~~~~~~~~~l~~~G~~v~~G  254 (329)
T TIGR02822       224 LDAAILFAPAG-------GLVPPALEALDRGGVLAVAG  254 (329)
T ss_pred             ceEEEECCCcH-------HHHHHHHHhhCCCcEEEEEe
Confidence            89877654431       36778889999999998865

Members of this model form a distinct subset of the larger family of oxidoreductases that includes zinc-binding alcohol dehydrogenases and NADPH:quinone reductases (pfam00107). The gene neighborhood of members of this family is not conserved and it appears that no members are characterized. The sequence of the family includes 6 invariant cysteine residues and one invariant histidine. It appears that no member is characterized.

>PRK07819 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=97.44  E-value=0.0012  Score=61.21  Aligned_cols=100  Identities=17%  Similarity=0.294  Sum_probs=70.3

Q ss_pred             CEEEEeccCCChhhHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHh-------cCCCC--------CCeEEEEccccch
Q 042119          132 KKVAFVGSGPMPLTSIIMAKHHLTSTHFDNFDIDEAANDVARSIVAS-------DAEFE--------GRMKFLTRDIMEV  196 (286)
Q Consensus       132 ~~VL~IG~G~lp~tai~lA~~~~~g~~V~~iDid~~ai~~Ar~~~~~-------~g~l~--------~~i~f~~~D~~~~  196 (286)
                      ++|.+||+|.+|..-.....  ..|.+|+.+|+++++++.+++.+++       .|.+.        .++++ +.|.   
T Consensus         6 ~~V~ViGaG~mG~~iA~~~a--~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~l~~-~~~~---   79 (286)
T PRK07819          6 QRVGVVGAGQMGAGIAEVCA--RAGVDVLVFETTEELATAGRNRIEKSLERAVSRGKLTERERDAALARLRF-TTDL---   79 (286)
T ss_pred             cEEEEEcccHHHHHHHHHHH--hCCCEEEEEECCHHHHHHHHHHHHHHHHHHHhcccCChhhHHHHHhCeEe-eCCH---
Confidence            58999999998866433322  3799999999999999987766432       22110        23333 2332   


Q ss_pred             hhcCCCcceeehhhhccCChhHHHHHHHHHHhhc-cCCcEEEEee
Q 042119          197 KEQLGEYDCIFLAALVGMSKEEKLTILGHIRKYM-KDGGILLVRS  240 (286)
Q Consensus       197 ~~~l~~fD~V~~aalvg~~~~~k~~vl~~l~~~l-~pgg~lv~r~  240 (286)
                       ..+.+.|+|+.+.  .-+.+-|..++..+.+.+ +||.+++..+
T Consensus        80 -~~~~~~d~ViEav--~E~~~~K~~l~~~l~~~~~~~~~il~snT  121 (286)
T PRK07819         80 -GDFADRQLVIEAV--VEDEAVKTEIFAELDKVVTDPDAVLASNT  121 (286)
T ss_pred             -HHhCCCCEEEEec--ccCHHHHHHHHHHHHHhhCCCCcEEEECC
Confidence             2356899999764  346688999999999998 7888887754

>TIGR00518 alaDH alanine dehydrogenase

Probab=97.43  E-value=0.00032  Score=67.55  Aligned_cols=102  Identities=20%  Similarity=0.280  Sum_probs=68.2

Q ss_pred             CCCCEEEEeccCCChhhHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEccccchhhcCCCcceeeh
Q 042119          129 VQPKKVAFVGSGPMPLTSIIMAKHHLTSTHFDNFDIDEAANDVARSIVASDAEFEGRMKFLTRDIMEVKEQLGEYDCIFL  208 (286)
Q Consensus       129 ~~~~~VL~IG~G~lp~tai~lA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~g~l~~~i~f~~~D~~~~~~~l~~fD~V~~  208 (286)
                      -++.+|+.||+|+.|..++..++.  .|++|+.+|.+++..+.+.+.   .|   ..+.....+..++...+.++|+|+.
T Consensus       165 l~~~~VlViGaG~vG~~aa~~a~~--lGa~V~v~d~~~~~~~~l~~~---~g---~~v~~~~~~~~~l~~~l~~aDvVI~  236 (370)
T TIGR00518       165 VEPGDVTIIGGGVVGTNAAKMANG--LGATVTILDINIDRLRQLDAE---FG---GRIHTRYSNAYEIEDAVKRADLLIG  236 (370)
T ss_pred             CCCceEEEEcCCHHHHHHHHHHHH--CCCeEEEEECCHHHHHHHHHh---cC---ceeEeccCCHHHHHHHHccCCEEEE
Confidence            367889999999999999999984  688999999999876554332   33   2232222333334444568999997


Q ss_pred             hhhc-cCChhHHHHHHHHHHhhccCCcEEEEee
Q 042119          209 AALV-GMSKEEKLTILGHIRKYMKDGGILLVRS  240 (286)
Q Consensus       209 aalv-g~~~~~k~~vl~~l~~~l~pgg~lv~r~  240 (286)
                      +..+ +.. .+. -+-++..+.|+||++++--.
T Consensus       237 a~~~~g~~-~p~-lit~~~l~~mk~g~vIvDva  267 (370)
T TIGR00518       237 AVLIPGAK-APK-LVSNSLVAQMKPGAVIVDVA  267 (370)
T ss_pred             ccccCCCC-CCc-CcCHHHHhcCCCCCEEEEEe
Confidence            7644 221 121 13466777899999887644

The family of known L-alanine dehydrogenases includes representatives from the Proteobacteria, Firmicutes, and Cyanobacteria, all with about 50 % identity or better. An outlier to this group in both sequence and gap pattern is the homolog from Helicobacter pylori, an epsilon division Proteobacteria, which must be considered a putative alanine dehydrogenase. Related proteins include saccharopine dehydrogenase and the N-terminal half of the NAD(P) transhydrogenase alpha subunit. All of these related proteins bind NAD and/or NADP.

>PF01861 DUF43: Protein of unknown function DUF43; InterPro: IPR002723 This family of prokaryotic proteins have not been characterised

Probab=97.43  E-value=0.0036  Score=56.80  Aligned_cols=109  Identities=22%  Similarity=0.319  Sum_probs=68.0

Q ss_pred             HHhcCCCCCCEEEEeccCCChhhHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEccccch-hhcC-
Q 042119          123 LSENGVVQPKKVAFVGSGPMPLTSIIMAKHHLTSTHFDNFDIDEAANDVARSIVASDAEFEGRMKFLTRDIMEV-KEQL-  200 (286)
Q Consensus       123 l~~~~~~~~~~VL~IG~G~lp~tai~lA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~g~l~~~i~f~~~D~~~~-~~~l-  200 (286)
                      +.+.+.-.+++||+||-+  =++|+.+|- ..+..+|+.+|||+..++.-++.+++.|.   +|+.+..|+.+- |.++ 
T Consensus        37 ~~~~gdL~gk~il~lGDD--DLtSlA~al-~~~~~~I~VvDiDeRll~fI~~~a~~~gl---~i~~~~~DlR~~LP~~~~  110 (243)
T PF01861_consen   37 MAERGDLEGKRILFLGDD--DLTSLALAL-TGLPKRITVVDIDERLLDFINRVAEEEGL---PIEAVHYDLRDPLPEELR  110 (243)
T ss_dssp             HHHTT-STT-EEEEES-T--T-HHHHHHH-HT--SEEEEE-S-HHHHHHHHHHHHHHT-----EEEE---TTS---TTTS
T ss_pred             HHhcCcccCCEEEEEcCC--cHHHHHHHh-hCCCCeEEEEEcCHHHHHHHHHHHHHcCC---ceEEEEecccccCCHHHh
Confidence            334455678999999997  568888886 46779999999999999999999999994   499999999763 3344 


Q ss_pred             CCcceeehhhhccCChhHHHHHHHHHHhhccCCc-EEEEe
Q 042119          201 GEYDCIFLAALVGMSKEEKLTILGHIRKYMKDGG-ILLVR  239 (286)
Q Consensus       201 ~~fD~V~~aalvg~~~~~k~~vl~~l~~~l~pgg-~lv~r  239 (286)
                      +.||++|.+--  .+.+--.-++.+-...||.-| ...+.
T Consensus       111 ~~fD~f~TDPP--yT~~G~~LFlsRgi~~Lk~~g~~gy~~  148 (243)
T PF01861_consen  111 GKFDVFFTDPP--YTPEGLKLFLSRGIEALKGEGCAGYFG  148 (243)
T ss_dssp             S-BSEEEE-----SSHHHHHHHHHHHHHTB-STT-EEEEE
T ss_pred             cCCCEEEeCCC--CCHHHHHHHHHHHHHHhCCCCceEEEE
Confidence            57999998742  223444457777777777666 44443

All the members are 350-400 amino acids long.; PDB: 2QM3_A.

>PF03721 UDPG_MGDP_dh_N: UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain; InterPro: IPR001732 The UDP-glucose/GDP-mannose dehydrogenases are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate [, ]

Probab=97.42  E-value=0.00034  Score=61.01  Aligned_cols=101  Identities=20%  Similarity=0.346  Sum_probs=62.3

Q ss_pred             CEEEEeccCCChhh-HHHHHhhcCCCcEEEEEeCChHHHHHHH------------HHHHhcCCCCCCeEEEEccccchhh
Q 042119          132 KKVAFVGSGPMPLT-SIIMAKHHLTSTHFDNFDIDEAANDVAR------------SIVASDAEFEGRMKFLTRDIMEVKE  198 (286)
Q Consensus       132 ~~VL~IG~G~lp~t-ai~lA~~~~~g~~V~~iDid~~ai~~Ar------------~~~~~~g~l~~~i~f~~~D~~~~~~  198 (286)
                      ++|..||.|-.|++ |..||+   .|.+|+|+|+|++.++.-+            +++++.. -..+.++. .|..   .
T Consensus         1 M~I~ViGlGyvGl~~A~~lA~---~G~~V~g~D~~~~~v~~l~~g~~p~~E~~l~~ll~~~~-~~~~l~~t-~~~~---~   72 (185)
T PF03721_consen    1 MKIAVIGLGYVGLPLAAALAE---KGHQVIGVDIDEEKVEALNNGELPIYEPGLDELLKENV-SAGRLRAT-TDIE---E   72 (185)
T ss_dssp             -EEEEE--STTHHHHHHHHHH---TTSEEEEE-S-HHHHHHHHTTSSSS-CTTHHHHHHHHH-HTTSEEEE-SEHH---H
T ss_pred             CEEEEECCCcchHHHHHHHHh---CCCEEEEEeCChHHHHHHhhccccccccchhhhhcccc-ccccchhh-hhhh---h
Confidence            58999999999965 556666   8999999999999887765            2333221 12455553 3332   2


Q ss_pred             cCCCcceeehhhhccC------ChhHHHHHHHHHHhhccCCcEEEEee
Q 042119          199 QLGEYDCIFLAALVGM------SKEEKLTILGHIRKYMKDGGILLVRS  240 (286)
Q Consensus       199 ~l~~fD~V~~aalvg~------~~~~k~~vl~~l~~~l~pgg~lv~r~  240 (286)
                      .....|++|++.--..      +...-..+++.+.+.+++|.++++++
T Consensus        73 ai~~adv~~I~VpTP~~~~~~~Dls~v~~a~~~i~~~l~~~~lvV~~S  120 (185)
T PF03721_consen   73 AIKDADVVFICVPTPSDEDGSPDLSYVESAIESIAPVLRPGDLVVIES  120 (185)
T ss_dssp             HHHH-SEEEE----EBETTTSBETHHHHHHHHHHHHHHCSCEEEEESS
T ss_pred             hhhccceEEEecCCCccccCCccHHHHHHHHHHHHHHHhhcceEEEcc
Confidence            2346799988753211      12334678999999999999999998

The enzymes have a wide range of functions. In plants UDP-glucose dehydrogenase, 1.1.1.22 from EC, is an important enzyme in the synthesis of hemicellulose and pectin [], which are the components of newly formed cell walls; while in zebrafish UDP-glucose dehydrogenase is required for cardiac valve formation []. In Xanthomonas campestris, a plant pathogen, UDP-glucose dehydrogenase is required for virulence []. GDP-mannose dehydrogenase, 1.1.1.132 from EC, catalyses the formation of GDP-mannuronic acid, which is the monomeric unit from which the exopolysaccharide alginate is formed. Alginate is secreted by a number of bacteria, which include Pseudomonas aeruginosa and Azotobacter vinelandii. In P. aeruginosa, alginate is believed to play an important role in the bacteria's resistance to antibiotics and the host immune response [], while in A. vinelandii it is essential for the encystment process []. This entry represents the N-terminal NAD(+)-binding domain. Structural studies indicate that this domain forms an alpha-beta structure containing the six-stranded parallel beta sheet characteristic of the dinucleotide binding Rossman fold [, ].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 3OJO_A 3OJL_A 1MV8_B 1MUU_A 1MFZ_C 3GG2_D 1DLJ_A 1DLI_A 3G79_B 2Y0E_D ....

>TIGR03366 HpnZ_proposed putative phosphonate catabolism associated alcohol dehydrogenase

Probab=97.42  E-value=0.00072  Score=61.79  Aligned_cols=102  Identities=15%  Similarity=0.099  Sum_probs=69.2

Q ss_pred             HHhcCCCCCCEEEEeccCCChhhHHHHHhhcCCCcE-EEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEccc-cchhh--
Q 042119          123 LSENGVVQPKKVAFVGSGPMPLTSIIMAKHHLTSTH-FDNFDIDEAANDVARSIVASDAEFEGRMKFLTRDI-MEVKE--  198 (286)
Q Consensus       123 l~~~~~~~~~~VL~IG~G~lp~tai~lA~~~~~g~~-V~~iDid~~ai~~Ar~~~~~~g~l~~~i~f~~~D~-~~~~~--  198 (286)
                      +.+....++++||.+|+|++|+.++.+|+.  .|++ |+++|.+++..+.|++    +| ...-+..  .+. ..+..  
T Consensus       113 l~~~~~~~g~~VlV~G~G~vG~~~~~~ak~--~G~~~Vi~~~~~~~r~~~a~~----~G-a~~~i~~--~~~~~~~~~~~  183 (280)
T TIGR03366       113 LEAAGDLKGRRVLVVGAGMLGLTAAAAAAA--AGAARVVAADPSPDRRELALS----FG-ATALAEP--EVLAERQGGLQ  183 (280)
T ss_pred             HHhccCCCCCEEEEECCCHHHHHHHHHHHH--cCCCEEEEECCCHHHHHHHHH----cC-CcEecCc--hhhHHHHHHHh
Confidence            334455688999999999999999999994  6876 9999999998887766    45 2111111  111 11111  


Q ss_pred             cCCCcceeehhhhccCChhHHHHHHHHHHhhccCCcEEEEee
Q 042119          199 QLGEYDCIFLAALVGMSKEEKLTILGHIRKYMKDGGILLVRS  240 (286)
Q Consensus       199 ~l~~fD~V~~aalvg~~~~~k~~vl~~l~~~l~pgg~lv~r~  240 (286)
                      .-..+|+|+.+.-.     +  ..++...+.++|||+++.-.
T Consensus       184 ~~~g~d~vid~~G~-----~--~~~~~~~~~l~~~G~iv~~G  218 (280)
T TIGR03366       184 NGRGVDVALEFSGA-----T--AAVRACLESLDVGGTAVLAG  218 (280)
T ss_pred             CCCCCCEEEECCCC-----h--HHHHHHHHHhcCCCEEEEec
Confidence            11369999865321     1  36677888999999998765

This clade of zinc-binding alcohol dehydrogenases (members of pfam00107) are repeatedly associated with genes proposed to be involved with the catabolism of phosphonate compounds.

>PRK06035 3-hydroxyacyl-CoA dehydrogenase; Validated

Probab=97.40  E-value=0.00083  Score=62.17  Aligned_cols=98  Identities=19%  Similarity=0.209  Sum_probs=66.6

Q ss_pred             CEEEEeccCCChhhHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhc----------CCC--------CCCeEEEEccc
Q 042119          132 KKVAFVGSGPMPLTSIIMAKHHLTSTHFDNFDIDEAANDVARSIVASD----------AEF--------EGRMKFLTRDI  193 (286)
Q Consensus       132 ~~VL~IG~G~lp~tai~lA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~----------g~l--------~~~i~f~~~D~  193 (286)
                      ++|..||+|.+|.+......  ..|.+|+.+|++++.++.+++.+++.          |..        ..++.+. .|.
T Consensus         4 ~~I~ViGaG~mG~~iA~~la--~~G~~V~l~d~~~~~l~~~~~~i~~~~~~l~~~~~~g~~~~~~~~~~~~~i~~~-~~~   80 (291)
T PRK06035          4 KVIGVVGSGVMGQGIAQVFA--RTGYDVTIVDVSEEILKNAMELIESGPYGLRNLVEKGKMSEDEAKAIMARIRTS-TSY   80 (291)
T ss_pred             cEEEEECccHHHHHHHHHHH--hcCCeEEEEeCCHHHHHHHHHHHHhhhhhHHHHHHcCCCCHHHHHHHHhCcEee-CCH
Confidence            58999999999876444433  36889999999999999887654431          210        0123332 222


Q ss_pred             cchhhcCCCcceeehhhhccCChhHHHHHHHHHHhhccCCcEEEE
Q 042119          194 MEVKEQLGEYDCIFLAALVGMSKEEKLTILGHIRKYMKDGGILLV  238 (286)
Q Consensus       194 ~~~~~~l~~fD~V~~aalvg~~~~~k~~vl~~l~~~l~pgg~lv~  238 (286)
                          ..+.+.|+|+.+..  -+.+.|..+++++.+.++|+.+++.
T Consensus        81 ----~~~~~aDlVieav~--e~~~~k~~~~~~l~~~~~~~~il~S  119 (291)
T PRK06035         81 ----ESLSDADFIVEAVP--EKLDLKRKVFAELERNVSPETIIAS  119 (291)
T ss_pred             ----HHhCCCCEEEEcCc--CcHHHHHHHHHHHHhhCCCCeEEEE
Confidence                23457899998753  2335589999999999998887653

>KOG3178 consensus Hydroxyindole-O-methyltransferase and related SAM-dependent methyltransferases [General function prediction only]

Probab=97.38  E-value=0.0022  Score=60.87  Aligned_cols=160  Identities=14%  Similarity=0.099  Sum_probs=107.3

Q ss_pred             HHHHHHHHHHHHHHhHhhhHHHHHHhcCCCCcccccc---cCcCccchh---hhhHH---HHHHHHh--c-----CCCCC
Q 042119           68 QKMRESLIVLCGRAEGLLELEFATFLTKIPQPLNNLS---LFPYYGNYV---KLSKL---EYTILSE--N-----GVVQP  131 (286)
Q Consensus        68 ~~l~~~l~~l~~~~e~~lE~~~A~~l~~~~~p~~~L~---~fpy~~ny~---~l~~~---E~~~l~~--~-----~~~~~  131 (286)
                      .++.+.+-...++....-..+|.+.+..+.+++..-.   .|.|..-..   ..+..   ....+..  .     +.+.-
T Consensus        99 ~S~a~~~~~~~~~v~~~~w~~l~dai~eg~~~~~~~~G~~l~~~~~~~~~~~~~~~~sm~~l~~~~~~~il~~~~Gf~~v  178 (342)
T KOG3178|consen   99 GSLAPLVLLNTSKVIMNTWQFLKDAILEGGDAFATAHGMMLGGYGGADERFSKDFNGSMSFLSTLVMKKILEVYTGFKGV  178 (342)
T ss_pred             CchhHHHHHhcccchhhhHHHHHHHHHhcccCCccccchhhhhhcccccccHHHHHHHHHHHHHHHHHhhhhhhcccccC
Confidence            3555666677777777888899999988766654433   366664433   22221   1111111  0     11234


Q ss_pred             CEEEEeccCCChhhHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEccccchhhcCCCcceeehhhh
Q 042119          132 KKVAFVGSGPMPLTSIIMAKHHLTSTHFDNFDIDEAANDVARSIVASDAEFEGRMKFLTRDIMEVKEQLGEYDCIFLAAL  211 (286)
Q Consensus       132 ~~VL~IG~G~lp~tai~lA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~g~l~~~i~f~~~D~~~~~~~l~~fD~V~~aal  211 (286)
                      ...+|+|+|. |-++-.+.. .+|.  |.+++.|..-+-.++.... .|     |+.+-||-..  . ...-|+||+.-.
T Consensus       179 ~~avDvGgGi-G~v~k~ll~-~fp~--ik~infdlp~v~~~a~~~~-~g-----V~~v~gdmfq--~-~P~~daI~mkWi  245 (342)
T KOG3178|consen  179 NVAVDVGGGI-GRVLKNLLS-KYPH--IKGINFDLPFVLAAAPYLA-PG-----VEHVAGDMFQ--D-TPKGDAIWMKWI  245 (342)
T ss_pred             ceEEEcCCcH-hHHHHHHHH-hCCC--CceeecCHHHHHhhhhhhc-CC-----cceecccccc--c-CCCcCeEEEEee
Confidence            8999999995 555555544 4665  7777777777777777654 44     7888888743  2 446789987644


Q ss_pred             c-cCChhHHHHHHHHHHhhccCCcEEEEee
Q 042119          212 V-GMSKEEKLTILGHIRKYMKDGGILLVRS  240 (286)
Q Consensus       212 v-g~~~~~k~~vl~~l~~~l~pgg~lv~r~  240 (286)
                      + .|+.++-.++|+++++-++|||.|++.+
T Consensus       246 LhdwtDedcvkiLknC~~sL~~~GkIiv~E  275 (342)
T KOG3178|consen  246 LHDWTDEDCVKILKNCKKSLPPGGKIIVVE  275 (342)
T ss_pred             cccCChHHHHHHHHHHHHhCCCCCEEEEEe
Confidence            3 7788999999999999999999999865

>TIGR00006 S-adenosyl-methyltransferase MraW

Probab=97.36  E-value=0.00098  Score=62.64  Aligned_cols=81  Identities=17%  Similarity=0.149  Sum_probs=63.4

Q ss_pred             CCCCCCEEEEeccCCChhhHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEccccchhhcC-----C
Q 042119          127 GVVQPKKVAFVGSGPMPLTSIIMAKHHLTSTHFDNFDIDEAANDVARSIVASDAEFEGRMKFLTRDIMEVKEQL-----G  201 (286)
Q Consensus       127 ~~~~~~~VL~IG~G~lp~tai~lA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~g~l~~~i~f~~~D~~~~~~~l-----~  201 (286)
                      .+.++..++|-=+|.+|-|...+.+  +++++|+|+|+||+|++.|++.++..+   .|+++++++-.++...+     .
T Consensus        17 ~~~~ggiyVD~TlG~GGHS~~iL~~--l~~g~vigiD~D~~Al~~ak~~L~~~~---~R~~~i~~nF~~l~~~l~~~~~~   91 (305)
T TIGR00006        17 NIKPDGIYIDCTLGFGGHSKAILEQ--LGTGRLIGIDRDPQAIAFAKERLSDFE---GRVVLIHDNFANFFEHLDELLVT   91 (305)
T ss_pred             CcCCCCEEEEeCCCChHHHHHHHHh--CCCCEEEEEcCCHHHHHHHHHHHhhcC---CcEEEEeCCHHHHHHHHHhcCCC
Confidence            4567889999999977777665543  456999999999999999999887654   69999999988765432     4


Q ss_pred             Ccceeehhhhc
Q 042119          202 EYDCIFLAALV  212 (286)
Q Consensus       202 ~fD~V~~aalv  212 (286)
                      .+|.|+++-.|
T Consensus        92 ~vDgIl~DLGv  102 (305)
T TIGR00006        92 KIDGILVDLGV  102 (305)
T ss_pred             cccEEEEeccC
Confidence            58988877544

Genetics paper in 1972 links mra cluster to peptidoglycan biosynthesis in E. coli. Seems to be common in proteobacteria.wn.

>PF13679 Methyltransf_32: Methyltransferase domain

Probab=97.35  E-value=0.0017  Score=53.80  Aligned_cols=78  Identities=19%  Similarity=0.181  Sum_probs=58.8

Q ss_pred             CCCCCEEEEeccCCChhhHHHHHhh---cCCCcEEEEEeCChHHHHHHHHHHHhcCC-CCCCeEEEEccccchhhcCCCc
Q 042119          128 VVQPKKVAFVGSGPMPLTSIIMAKH---HLTSTHFDNFDIDEAANDVARSIVASDAE-FEGRMKFLTRDIMEVKEQLGEY  203 (286)
Q Consensus       128 ~~~~~~VL~IG~G~lp~tai~lA~~---~~~g~~V~~iDid~~ai~~Ar~~~~~~g~-l~~~i~f~~~D~~~~~~~l~~f  203 (286)
                      ..++.+|+|+||| -|+.+..+|..   ..++.+|++||.++..++.|++..++.+. +..++++..++..+... ....
T Consensus        23 ~~~~~~vvD~GsG-~GyLs~~La~~l~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~  100 (141)
T PF13679_consen   23 SKRCITVVDLGSG-KGYLSRALAHLLCNSSPNLRVLGIDCNESLVESAQKRAQKLGSDLEKRLSFIQGDIADESS-SDPP  100 (141)
T ss_pred             cCCCCEEEEeCCC-hhHHHHHHHHHHHhcCCCCeEEEEECCcHHHHHHHHHHHHhcchhhccchhhccchhhhcc-cCCC
Confidence            3678999999999 68888888861   03899999999999999999999998772 23678888887654322 2344


Q ss_pred             ceee
Q 042119          204 DCIF  207 (286)
Q Consensus       204 D~V~  207 (286)
                      ++++
T Consensus       101 ~~~v  104 (141)
T PF13679_consen  101 DILV  104 (141)
T ss_pred             eEEE
Confidence            5544

>PRK11760 putative 23S rRNA C2498 ribose 2'-O-ribose methyltransferase; Provisional

Probab=97.35  E-value=0.00083  Score=63.97  Aligned_cols=87  Identities=14%  Similarity=0.245  Sum_probs=64.3

Q ss_pred             CCCCEEEEeccCCChhhHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEccccchhhcCCCcceeeh
Q 042119          129 VQPKKVAFVGSGPMPLTSIIMAKHHLTSTHFDNFDIDEAANDVARSIVASDAEFEGRMKFLTRDIMEVKEQLGEYDCIFL  208 (286)
Q Consensus       129 ~~~~~VL~IG~G~lp~tai~lA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~g~l~~~i~f~~~D~~~~~~~l~~fD~V~~  208 (286)
                      .++++++||||+|+|.|-. +.+   .|++|++||..+    .+..+ ..    ..+|++..+|........+.+|+|+.
T Consensus       210 ~~g~~vlDLGAsPGGWT~~-L~~---rG~~V~AVD~g~----l~~~L-~~----~~~V~h~~~d~fr~~p~~~~vDwvVc  276 (357)
T PRK11760        210 APGMRAVDLGAAPGGWTYQ-LVR---RGMFVTAVDNGP----MAQSL-MD----TGQVEHLRADGFKFRPPRKNVDWLVC  276 (357)
T ss_pred             CCCCEEEEeCCCCcHHHHH-HHH---cCCEEEEEechh----cCHhh-hC----CCCEEEEeccCcccCCCCCCCCEEEE
Confidence            6899999999999999854 445   578999999664    22332 22    25899999998765443457999997


Q ss_pred             hhhccCChhHHHHHHHHHHhhccCC
Q 042119          209 AALVGMSKEEKLTILGHIRKYMKDG  233 (286)
Q Consensus       209 aalvg~~~~~k~~vl~~l~~~l~pg  233 (286)
                      +..     +...++.+-+.+-+..|
T Consensus       277 Dmv-----e~P~rva~lm~~Wl~~g  296 (357)
T PRK11760        277 DMV-----EKPARVAELMAQWLVNG  296 (357)
T ss_pred             ecc-----cCHHHHHHHHHHHHhcC
Confidence            743     35557888888888766

>PF04989 CmcI: Cephalosporin hydroxylase; InterPro: IPR007072 This entry contains Rhamnosyl O-methyltransferase which catalyses the O-methylation of the hydroxyl group located on C-2 of the first rhamnosyl residue linked to the phenolic group of glycosylated phenolphthiocerol dimycocerosates (PGL) and p-hydroxybenzoic acid derivatives (p-HBAD) []

Probab=97.34  E-value=0.00039  Score=61.72  Aligned_cols=106  Identities=19%  Similarity=0.226  Sum_probs=60.3

Q ss_pred             CCCCEEEEeccCCChhhHHHHHhh--cC-CCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEccccchhh-----cC
Q 042119          129 VQPKKVAFVGSGPMPLTSIIMAKH--HL-TSTHFDNFDIDEAANDVARSIVASDAEFEGRMKFLTRDIMEVKE-----QL  200 (286)
Q Consensus       129 ~~~~~VL~IG~G~lp~tai~lA~~--~~-~g~~V~~iDid~~ai~~Ar~~~~~~g~l~~~i~f~~~D~~~~~~-----~l  200 (286)
                      .+|+.|+++|.- -|-|++++|+-  .+ ..++|+|||||....+.  +..+..+ +.++|+|+.||..+...     .+
T Consensus        31 ~kPd~IIE~Gi~-~GGSli~~A~ml~~~~~~~~VigiDIdir~~~~--~a~e~hp-~~~rI~~i~Gds~d~~~~~~v~~~  106 (206)
T PF04989_consen   31 LKPDLIIETGIA-HGGSLIFWASMLELLGGKGKVIGIDIDIRPHNR--KAIESHP-MSPRITFIQGDSIDPEIVDQVREL  106 (206)
T ss_dssp             H--SEEEEE--T-TSHHHHHHHHHHHHTT---EEEEEES-GTT--S---GGGG-----TTEEEEES-SSSTHHHHTSGSS
T ss_pred             hCCCeEEEEecC-CCchHHHHHHHHHHhCCCceEEEEeCCcchhch--HHHhhcc-ccCceEEEECCCCCHHHHHHHHHh
Confidence            478999999996 57799988863  22 77999999997544322  2233355 67899999999875321     12


Q ss_pred             ---CCcceeehhhhccCChhHHHHHHHHHHhhccCCcEEEEee
Q 042119          201 ---GEYDCIFLAALVGMSKEEKLTILGHIRKYMKDGGILLVRS  240 (286)
Q Consensus       201 ---~~fD~V~~aalvg~~~~~k~~vl~~l~~~l~pgg~lv~r~  240 (286)
                         ....+|+.++...  .+.=.+.|+...+.++||+.+|+-+
T Consensus       107 ~~~~~~vlVilDs~H~--~~hvl~eL~~y~plv~~G~Y~IVeD  147 (206)
T PF04989_consen  107 ASPPHPVLVILDSSHT--HEHVLAELEAYAPLVSPGSYLIVED  147 (206)
T ss_dssp             ----SSEEEEESS------SSHHHHHHHHHHT--TT-EEEETS
T ss_pred             hccCCceEEEECCCcc--HHHHHHHHHHhCccCCCCCEEEEEe
Confidence               2345788877532  2455578888999999999999965

Members of this family are about 220 amino acids long. It also includes the CmcI protein O85726 from SWISSPROT, which is presumed to represent the cephalosporin-7--hydroxylase []. However this has not been experimentally verified.; GO: 0008168 methyltransferase activity, 0008610 lipid biosynthetic process; PDB: 2BR4_B 2BR3_E 2BR5_E 2BM8_J 2BM9_E.

>PF07942 N2227: N2227-like protein; InterPro: IPR012901 This family features sequences that are similar to a region of hypothetical yeast gene product N2227 (P53934 from SWISSPROT)

Probab=97.33  E-value=0.0018  Score=59.83  Aligned_cols=107  Identities=16%  Similarity=0.200  Sum_probs=81.4

Q ss_pred             CCCCEEEEeccCCChhhHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcC---C------------------------
Q 042119          129 VQPKKVAFVGSGPMPLTSIIMAKHHLTSTHFDNFDIDEAANDVARSIVASDA---E------------------------  181 (286)
Q Consensus       129 ~~~~~VL~IG~G~lp~tai~lA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~g---~------------------------  181 (286)
                      ..+.+||.=||| +|.-+.-+|+   .|..+.|.|.|--|+=.++-++..-.   .                        
T Consensus        55 ~~~~~VLVPGsG-LGRLa~Eia~---~G~~~~gnE~S~~Mll~s~fiLn~~~~~~~~~I~Pf~~~~sn~~~~~dqlr~v~  130 (270)
T PF07942_consen   55 RSKIRVLVPGSG-LGRLAWEIAK---LGYAVQGNEFSYFMLLASNFILNHCSQPNQFTIYPFVHSFSNQKSREDQLRPVR  130 (270)
T ss_pred             CCccEEEEcCCC-cchHHHHHhh---ccceEEEEEchHHHHHHHHHHHcccCCCCcEEEecceecccCCCCHHHhCCceE
Confidence            456799999999 7888999998   69999999999999877776655300   0                        


Q ss_pred             -----------CCCCeEEEEccccchhhcC---CCcceeehhhhccCChhHHHHHHHHHHhhccCCcEEEEee
Q 042119          182 -----------FEGRMKFLTRDIMEVKEQL---GEYDCIFLAALVGMSKEEKLTILGHIRKYMKDGGILLVRS  240 (286)
Q Consensus       182 -----------l~~~i~f~~~D~~~~~~~l---~~fD~V~~aalvg~~~~~k~~vl~~l~~~l~pgg~lv~r~  240 (286)
                                 -..++....||-.++-.+.   +.||+|..+.++- ++++-.+.++.|.+.|||||+.|=-.
T Consensus       131 iPDv~p~~~~~~~~~~sm~aGDF~e~y~~~~~~~~~d~VvT~FFID-TA~Ni~~Yi~tI~~lLkpgG~WIN~G  202 (270)
T PF07942_consen  131 IPDVDPSSELPSPSNLSMCAGDFLEVYGPDENKGSFDVVVTCFFID-TAENIIEYIETIEHLLKPGGYWINFG  202 (270)
T ss_pred             eCCcCcccccCCCCceeEecCccEEecCCcccCCcccEEEEEEEee-chHHHHHHHHHHHHHhccCCEEEecC
Confidence                       1245677777776655444   4799998876662 34678899999999999999776544

This is thought to be expressed during meiosis and may be involved in the defence response to stressful conditions [].

>cd08239 THR_DH_like L-threonine dehydrogenase (TDH)-like

Probab=97.32  E-value=0.00074  Score=62.97  Aligned_cols=104  Identities=17%  Similarity=0.182  Sum_probs=70.0

Q ss_pred             HHhcCCCCCCEEEEeccCCChhhHHHHHhhcCCCcE-EEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEccccchhh--c
Q 042119          123 LSENGVVQPKKVAFVGSGPMPLTSIIMAKHHLTSTH-FDNFDIDEAANDVARSIVASDAEFEGRMKFLTRDIMEVKE--Q  199 (286)
Q Consensus       123 l~~~~~~~~~~VL~IG~G~lp~tai~lA~~~~~g~~-V~~iDid~~ai~~Ar~~~~~~g~l~~~i~f~~~D~~~~~~--~  199 (286)
                      +.+..+.++++||.+|+|++|..++.+|++  .|++ |+++|.+++..+.+++    +| ...-+.....+...+..  .
T Consensus       156 l~~~~~~~g~~vlV~G~G~vG~~~~~~ak~--~G~~~vi~~~~~~~~~~~~~~----~g-a~~~i~~~~~~~~~~~~~~~  228 (339)
T cd08239         156 LRRVGVSGRDTVLVVGAGPVGLGALMLARA--LGAEDVIGVDPSPERLELAKA----LG-ADFVINSGQDDVQEIRELTS  228 (339)
T ss_pred             HHhcCCCCCCEEEEECCCHHHHHHHHHHHH--cCCCEEEEECCCHHHHHHHHH----hC-CCEEEcCCcchHHHHHHHhC
Confidence            344566789999999999999999999994  7888 9999999998877765    45 21112221112111111  1


Q ss_pred             CCCcceeehhhhccCChhHHHHHHHHHHhhccCCcEEEEee
Q 042119          200 LGEYDCIFLAALVGMSKEEKLTILGHIRKYMKDGGILLVRS  240 (286)
Q Consensus       200 l~~fD~V~~aalvg~~~~~k~~vl~~l~~~l~pgg~lv~r~  240 (286)
                      -..||+||.+..-      . ..+....+.|+++|.+++-.
T Consensus       229 ~~~~d~vid~~g~------~-~~~~~~~~~l~~~G~~v~~g  262 (339)
T cd08239         229 GAGADVAIECSGN------T-AARRLALEAVRPWGRLVLVG  262 (339)
T ss_pred             CCCCCEEEECCCC------H-HHHHHHHHHhhcCCEEEEEc
Confidence            1369999965421      1 24566778899999998754

MDR/AHD-like proteins, including a protein annotated as a threonine dehydrogenase. L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine via NAD(H)-dependent oxidation. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Zinc-dependent ADHs are medium chain dehydrogenase/reductase type proteins (MDRs) and have a NAD(P)(H)-binding domain in a Rossmann fold of an beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. In addition to alcohol dehydrogenases, this group includes quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc at

>COG3897 Predicted methyltransferase [General function prediction only]

Probab=97.30  E-value=0.00068  Score=59.73  Aligned_cols=104  Identities=20%  Similarity=0.281  Sum_probs=76.4

Q ss_pred             CCCCCEEEEeccCCChhhHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEccccchhhcCCCcceee
Q 042119          128 VVQPKKVAFVGSGPMPLTSIIMAKHHLTSTHFDNFDIDEAANDVARSIVASDAEFEGRMKFLTRDIMEVKEQLGEYDCIF  207 (286)
Q Consensus       128 ~~~~~~VL~IG~G~lp~tai~lA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~g~l~~~i~f~~~D~~~~~~~l~~fD~V~  207 (286)
                      ...++|||+.|+|+ |+-+|.-|+.  -...|+..|++|...+..+-+++..|   -.|.|...|...   +...||+++
T Consensus        77 tVrgkrVLd~gags-gLvaIAaa~a--GA~~v~a~d~~P~~~~ai~lNa~ang---v~i~~~~~d~~g---~~~~~Dl~L  147 (218)
T COG3897          77 TVRGKRVLDLGAGS-GLVAIAAARA--GAAEVVAADIDPWLEQAIRLNAAANG---VSILFTHADLIG---SPPAFDLLL  147 (218)
T ss_pred             ccccceeeeccccc-ChHHHHHHHh--hhHHHHhcCCChHHHHHhhcchhhcc---ceeEEeeccccC---CCcceeEEE
Confidence            36789999999996 8999988872  44679999999999999999999888   379999999844   335799988


Q ss_pred             hhhhccCChhHHHHHHHHHHhhccCCcEEEEeec
Q 042119          208 LAALVGMSKEEKLTILGHIRKYMKDGGILLVRSA  241 (286)
Q Consensus       208 ~aalvg~~~~~k~~vl~~l~~~l~pgg~lv~r~~  241 (286)
                      ..-++ .+...-.+++.-..+....|..+++-+.
T Consensus       148 agDlf-y~~~~a~~l~~~~~~l~~~g~~vlvgdp  180 (218)
T COG3897         148 AGDLF-YNHTEADRLIPWKDRLAEAGAAVLVGDP  180 (218)
T ss_pred             eecee-cCchHHHHHHHHHHHHHhCCCEEEEeCC
Confidence            65444 2223334567755555556666665554

>PRK07530 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=97.30  E-value=0.0019  Score=59.75  Aligned_cols=98  Identities=20%  Similarity=0.270  Sum_probs=67.5

Q ss_pred             CEEEEeccCCChhhHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhc-------CCCC--------CCeEEEEccccch
Q 042119          132 KKVAFVGSGPMPLTSIIMAKHHLTSTHFDNFDIDEAANDVARSIVASD-------AEFE--------GRMKFLTRDIMEV  196 (286)
Q Consensus       132 ~~VL~IG~G~lp~tai~lA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~-------g~l~--------~~i~f~~~D~~~~  196 (286)
                      ++|.+||+|.+|.+......  ..|.+|+.+|++++.++.+.+.+...       |.+.        .++++. .|.   
T Consensus         5 ~kI~vIGaG~mG~~iA~~la--~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~-~~~---   78 (292)
T PRK07530          5 KKVGVIGAGQMGNGIAHVCA--LAGYDVLLNDVSADRLEAGLATINGNLARQVAKGKISEEARAAALARISTA-TDL---   78 (292)
T ss_pred             CEEEEECCcHHHHHHHHHHH--HCCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEee-CCH---
Confidence            68999999998876544333  36889999999999998876543321       3111        234432 232   


Q ss_pred             hhcCCCcceeehhhhccCChhHHHHHHHHHHhhccCCcEEEE
Q 042119          197 KEQLGEYDCIFLAALVGMSKEEKLTILGHIRKYMKDGGILLV  238 (286)
Q Consensus       197 ~~~l~~fD~V~~aalvg~~~~~k~~vl~~l~~~l~pgg~lv~  238 (286)
                       ..+.+.|+|+.+..  .+.+.|..+++.+.+.++|+.+++.
T Consensus        79 -~~~~~aD~Vieavp--e~~~~k~~~~~~l~~~~~~~~ii~s  117 (292)
T PRK07530         79 -EDLADCDLVIEAAT--EDETVKRKIFAQLCPVLKPEAILAT  117 (292)
T ss_pred             -HHhcCCCEEEEcCc--CCHHHHHHHHHHHHhhCCCCcEEEE
Confidence             23467899998742  2345688999999999999987763

>TIGR02987 met_A_Alw26 type II restriction m6 adenine DNA methyltransferase, Alw26I/Eco31I/Esp3I family

Probab=97.30  E-value=0.00078  Score=67.57  Aligned_cols=76  Identities=14%  Similarity=0.138  Sum_probs=52.1

Q ss_pred             CCCEEEEeccCCChhhHHHHHhhcC-------CCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEccccch-----h
Q 042119          130 QPKKVAFVGSGPMPLTSIIMAKHHL-------TSTHFDNFDIDEAANDVARSIVASDAEFEGRMKFLTRDIMEV-----K  197 (286)
Q Consensus       130 ~~~~VL~IG~G~lp~tai~lA~~~~-------~g~~V~~iDid~~ai~~Ar~~~~~~g~l~~~i~f~~~D~~~~-----~  197 (286)
                      .+.+|+|.|||.+++....+.+ ..       ....++|+|+|+.++..|+.++...+.  ..+++.++|....     .
T Consensus        31 ~~~~ilDP~cGsG~fl~~~~~~-~~~~~~~~~~~~~i~g~DId~~a~~~a~~~l~~~~~--~~~~i~~~d~l~~~~~~~~  107 (524)
T TIGR02987        31 TKTKIIDPCCGDGRLIAALLKK-NEEINYFKEVELNIYFADIDKTLLKRAKKLLGEFAL--LEINVINFNSLSYVLLNIE  107 (524)
T ss_pred             cceEEEeCCCCccHHHHHHHHH-HHhcCCcccceeeeeeechhHHHHHHHHHHHhhcCC--CCceeeecccccccccccc
Confidence            4579999999987766544433 11       126799999999999999999887762  2456666664321     1


Q ss_pred             hcCCCcceeeh
Q 042119          198 EQLGEYDCIFL  208 (286)
Q Consensus       198 ~~l~~fD~V~~  208 (286)
                      ...+.||+|+.
T Consensus       108 ~~~~~fD~IIg  118 (524)
T TIGR02987       108 SYLDLFDIVIT  118 (524)
T ss_pred             cccCcccEEEe
Confidence            12247999864

Members of this family are the m6-adenine DNA methyltransferase protein, or domain of a fusion protein that also carries m5 cytosine methyltransferase activity, of type II restriction systems of the Alw26I/Eco31I/Esp3I family. A methyltransferase of this family is alway accompanied by a type II restriction endonuclease from the Alw26I/Eco31I/Esp3I family (TIGR02986) and by an adenine-specific modification methyltransferase. Members of this family are unusual in that regions of similarity to homologs outside this family are circularly permuted.

>cd08281 liver_ADH_like1 Zinc-dependent alcohol dehydrogenases (ADH) and class III ADG (AKA formaldehyde dehydrogenase)

Probab=97.27  E-value=0.00089  Score=63.68  Aligned_cols=102  Identities=23%  Similarity=0.275  Sum_probs=69.4

Q ss_pred             hcCCCCCCEEEEeccCCChhhHHHHHhhcCCCc-EEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEccccchhhcC--C
Q 042119          125 ENGVVQPKKVAFVGSGPMPLTSIIMAKHHLTST-HFDNFDIDEAANDVARSIVASDAEFEGRMKFLTRDIMEVKEQL--G  201 (286)
Q Consensus       125 ~~~~~~~~~VL~IG~G~lp~tai~lA~~~~~g~-~V~~iDid~~ai~~Ar~~~~~~g~l~~~i~f~~~D~~~~~~~l--~  201 (286)
                      ...+.++++||..|+|++|..++.+|+.  .|+ +|+++|.+++..+.+++    +| ...-+.....|..+....+  +
T Consensus       186 ~~~i~~g~~VlV~G~G~vG~~a~~lak~--~G~~~Vi~~~~~~~r~~~a~~----~G-a~~~i~~~~~~~~~~i~~~~~~  258 (371)
T cd08281         186 TAGVRPGQSVAVVGLGGVGLSALLGAVA--AGASQVVAVDLNEDKLALARE----LG-ATATVNAGDPNAVEQVRELTGG  258 (371)
T ss_pred             ccCCCCCCEEEEECCCHHHHHHHHHHHH--cCCCcEEEEcCCHHHHHHHHH----cC-CceEeCCCchhHHHHHHHHhCC
Confidence            3456788999999999999999999994  688 69999999999888765    46 2211222112211111111  2


Q ss_pred             CcceeehhhhccCChhHHHHHHHHHHhhccCCcEEEEee
Q 042119          202 EYDCIFLAALVGMSKEEKLTILGHIRKYMKDGGILLVRS  240 (286)
Q Consensus       202 ~fD~V~~aalvg~~~~~k~~vl~~l~~~l~pgg~lv~r~  240 (286)
                      .+|+||.+.  |.   .  ..++...+.+++||.++.-.
T Consensus       259 g~d~vid~~--G~---~--~~~~~~~~~l~~~G~iv~~G  290 (371)
T cd08281         259 GVDYAFEMA--GS---V--PALETAYEITRRGGTTVTAG  290 (371)
T ss_pred             CCCEEEECC--CC---h--HHHHHHHHHHhcCCEEEEEc
Confidence            699998653  21   1  35667788899999988764

NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. This group contains members identified as zinc dependent alcohol dehydrogenases (ADH), and class III ADG (aka formaldehyde dehydrogenase, FDH). Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. Class III ADH are also know as glutathione-dependent formaldehyde dehyd

>TIGR03201 dearomat_had 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase

Probab=97.25  E-value=0.0012  Score=62.23  Aligned_cols=103  Identities=16%  Similarity=0.198  Sum_probs=68.0

Q ss_pred             HhcCCCCCCEEEEeccCCChhhHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEc---cccchhhcC
Q 042119          124 SENGVVQPKKVAFVGSGPMPLTSIIMAKHHLTSTHFDNFDIDEAANDVARSIVASDAEFEGRMKFLTR---DIMEVKEQL  200 (286)
Q Consensus       124 ~~~~~~~~~~VL~IG~G~lp~tai~lA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~g~l~~~i~f~~~---D~~~~~~~l  200 (286)
                      .+..+.++.+|+..|+|++|..++.+|+.  .|++|+++|.+++..+.+++    +| ...-+.....   |..+....+
T Consensus       160 ~~~~~~~g~~VlV~G~G~vG~~a~~~a~~--~G~~vi~~~~~~~~~~~~~~----~G-a~~~i~~~~~~~~~~~~~~~~~  232 (349)
T TIGR03201       160 VQAGLKKGDLVIVIGAGGVGGYMVQTAKA--MGAAVVAIDIDPEKLEMMKG----FG-ADLTLNPKDKSAREVKKLIKAF  232 (349)
T ss_pred             HhcCCCCCCEEEEECCCHHHHHHHHHHHH--cCCeEEEEcCCHHHHHHHHH----hC-CceEecCccccHHHHHHHHHhh
Confidence            34456789999999999999999999994  68899999999999887765    45 2211222111   111111111


Q ss_pred             ---CCcc----eeehhhhccCChhHHHHHHHHHHhhccCCcEEEEee
Q 042119          201 ---GEYD----CIFLAALVGMSKEEKLTILGHIRKYMKDGGILLVRS  240 (286)
Q Consensus       201 ---~~fD----~V~~aalvg~~~~~k~~vl~~l~~~l~pgg~lv~r~  240 (286)
                         .++|    +||.+.  |.   .  ..++...+.+++||++++-.
T Consensus       233 t~~~g~d~~~d~v~d~~--g~---~--~~~~~~~~~l~~~G~iv~~G  272 (349)
T TIGR03201       233 AKARGLRSTGWKIFECS--GS---K--PGQESALSLLSHGGTLVVVG  272 (349)
T ss_pred             cccCCCCCCcCEEEECC--CC---h--HHHHHHHHHHhcCCeEEEEC
Confidence               2455    676543  21   1  35566778899999998764

Members of this protein family are 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase, an enzyme in the anaerobic metabolism of aromatic enzymes by way of benzoyl-CoA, as seen in Thauera aromatica, Geobacter metallireducens, and Azoarcus sp. The experimentally characterized form from T. aromatica uses only NAD+, not NADP+. Note that Rhodopseudomonas palustris uses a different pathway to perform a similar degradation of benzoyl-CoA to 3-hydroxpimelyl-CoA.

>PRK08293 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=97.24  E-value=0.0024  Score=59.00  Aligned_cols=100  Identities=20%  Similarity=0.242  Sum_probs=68.3

Q ss_pred             CEEEEeccCCChhhHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhc-------CCCC---------CCeEEEEccccc
Q 042119          132 KKVAFVGSGPMPLTSIIMAKHHLTSTHFDNFDIDEAANDVARSIVASD-------AEFE---------GRMKFLTRDIME  195 (286)
Q Consensus       132 ~~VL~IG~G~lp~tai~lA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~-------g~l~---------~~i~f~~~D~~~  195 (286)
                      ++|..||+|.+|.+......  ..|.+|+.+|++++.++.+++.+++.       +.+.         .++++ +.|.  
T Consensus         4 ~kIaViGaG~mG~~iA~~la--~~G~~V~l~d~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~-~~d~--   78 (287)
T PRK08293          4 KNVTVAGAGVLGSQIAFQTA--FHGFDVTIYDISDEALEKAKERIAKLADRYVRDLEATKEAPAEAALNRITL-TTDL--   78 (287)
T ss_pred             cEEEEECCCHHHHHHHHHHH--hcCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhHHHHHcCeEE-eCCH--
Confidence            58999999998866544333  36889999999999999988764321       0010         23443 2333  


Q ss_pred             hhhcCCCcceeehhhhccCChhHHHHHHHHHHhhccCCcEEEEe
Q 042119          196 VKEQLGEYDCIFLAALVGMSKEEKLTILGHIRKYMKDGGILLVR  239 (286)
Q Consensus       196 ~~~~l~~fD~V~~aalvg~~~~~k~~vl~~l~~~l~pgg~lv~r  239 (286)
                       .....+.|+|+.+..  .+.+-|..+++++.+.++++.+|+..
T Consensus        79 -~~a~~~aDlVieavp--e~~~~k~~~~~~l~~~~~~~~ii~sn  119 (287)
T PRK08293         79 -AEAVKDADLVIEAVP--EDPEIKGDFYEELAKVAPEKTIFATN  119 (287)
T ss_pred             -HHHhcCCCEEEEecc--CCHHHHHHHHHHHHhhCCCCCEEEEC
Confidence             223457899998743  23456899999999999888876543

>PF01262 AlaDh_PNT_C: Alanine dehydrogenase/PNT, C-terminal domain; InterPro: IPR007698 Alanine dehydrogenases (1

Probab=97.23  E-value=0.00019  Score=61.33  Aligned_cols=103  Identities=17%  Similarity=0.118  Sum_probs=66.9

Q ss_pred             CCCCEEEEeccCCChhhHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEE-------------------
Q 042119          129 VQPKKVAFVGSGPMPLTSIIMAKHHLTSTHFDNFDIDEAANDVARSIVASDAEFEGRMKFL-------------------  189 (286)
Q Consensus       129 ~~~~~VL~IG~G~lp~tai~lA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~g~l~~~i~f~-------------------  189 (286)
                      .+|.+|+++|.|..|..|..+++.  .|++|+.+|..++..+..+..    +  ...+...                   
T Consensus        18 ~~p~~vvv~G~G~vg~gA~~~~~~--lGa~v~~~d~~~~~~~~~~~~----~--~~~i~~~~~~~~~~~~~~~~~~~~~~   89 (168)
T PF01262_consen   18 VPPAKVVVTGAGRVGQGAAEIAKG--LGAEVVVPDERPERLRQLESL----G--AYFIEVDYEDHLERKDFDKADYYEHP   89 (168)
T ss_dssp             E-T-EEEEESTSHHHHHHHHHHHH--TT-EEEEEESSHHHHHHHHHT----T--TEESEETTTTTTTSB-CCHHHCHHHC
T ss_pred             CCCeEEEEECCCHHHHHHHHHHhH--CCCEEEeccCCHHHHHhhhcc----c--CceEEEcccccccccccchhhhhHHH
Confidence            578999999999999999999995  799999999999887765543    2  1223331                   


Q ss_pred             EccccchhhcCCCcceeehhhhccCChhHHHHHHHHHHhhccCCcEEEEee
Q 042119          190 TRDIMEVKEQLGEYDCIFLAALVGMSKEEKLTILGHIRKYMKDGGILLVRS  240 (286)
Q Consensus       190 ~~D~~~~~~~l~~fD~V~~aalvg~~~~~k~~vl~~l~~~l~pgg~lv~r~  240 (286)
                      ...-..+...+..+|+|+.+.+......++ =+-++..+.|+||.+++--+
T Consensus        90 ~~~~~~f~~~i~~~d~vI~~~~~~~~~~P~-lvt~~~~~~m~~gsvIvDis  139 (168)
T PF01262_consen   90 ESYESNFAEFIAPADIVIGNGLYWGKRAPR-LVTEEMVKSMKPGSVIVDIS  139 (168)
T ss_dssp             CHHHHHHHHHHHH-SEEEEHHHBTTSS----SBEHHHHHTSSTTEEEEETT
T ss_pred             HHhHHHHHHHHhhCcEEeeecccCCCCCCE-EEEhHHhhccCCCceEEEEE
Confidence            111111222335689999877763233333 46778888999888887665

4.1.1 from EC) and pyridine nucleotide transhydrogenase (1.6.1.1 from EC) have been shown to share regions of similarity []. Alanine dehydrogenase catalyzes the NAD-dependent reversible reductive amination of pyruvate into alanine. Pyridine nucleotide transhydrogenase catalyzes the reduction of NADP+ to NADPH with the concomitant oxidation of NADH to NAD+. This enzyme is located in the plasma membrane of prokaryotes and in the inner membrane of the mitochondria of eukaryotes. The transhydrogenation between NADH and NADP is coupled with the translocation of a proton across the membrane. In prokaryotes the enzyme is composed of two different subunits, an alpha chain (gene pntA) and a beta chain (gene pntB), while in eukaryotes it is a single chain protein. The sequence of alanine dehydrogenase from several bacterial species are related with those of the alpha subunit of bacterial pyridine nucleotide transhydrogenase and of the N-terminal half of the eukaryotic enzyme. The two most conserved regions correspond respectively to the N-terminal extremity of these proteins and to a central glycine-rich region which is part of the NAD(H)-binding site. This is a C-terminal domain of alanine dehydrogenases (1.4.1.1 from EC). This domain is also found in the lysine 2-oxoglutarate reductases. ; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1KOL_A 2EEZ_F 1L7E_C 1PTJ_B 1NM5_A 1HZZ_B 1U2G_B 2FSV_A 2FR8_A 1U2D_A ....

>KOG1709 consensus Guanidinoacetate methyltransferase and related proteins [Amino acid transport and metabolism]

Probab=97.17  E-value=0.0031  Score=56.48  Aligned_cols=118  Identities=16%  Similarity=0.197  Sum_probs=84.8

Q ss_pred             CCCCEEEEeccCCChhhHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEccccchhhcC--CCccee
Q 042119          129 VQPKKVAFVGSGPMPLTSIIMAKHHLTSTHFDNFDIDEAANDVARSIVASDAEFEGRMKFLTRDIMEVKEQL--GEYDCI  206 (286)
Q Consensus       129 ~~~~~VL~IG~G~lp~tai~lA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~g~l~~~i~f~~~D~~~~~~~l--~~fD~V  206 (286)
                      +++.|||.||=| +|+..-.+..  .+-.+=+.|+..|+..++-|+..=..   .++|-...|--.++...+  +.||=|
T Consensus       100 tkggrvLnVGFG-MgIidT~iQe--~~p~~H~IiE~hp~V~krmr~~gw~e---k~nViil~g~WeDvl~~L~d~~FDGI  173 (271)
T KOG1709|consen  100 TKGGRVLNVGFG-MGIIDTFIQE--APPDEHWIIEAHPDVLKRMRDWGWRE---KENVIILEGRWEDVLNTLPDKHFDGI  173 (271)
T ss_pred             hCCceEEEeccc-hHHHHHHHhh--cCCcceEEEecCHHHHHHHHhccccc---ccceEEEecchHhhhccccccCccee
Confidence            788999999999 7887777765  34455567899999988777652222   256777777666665544  469999


Q ss_pred             ehhhhccCChhHHHHHHHHHHhhccCCcEEEEeecCcc-eeeecccCC
Q 042119          207 FLAALVGMSKEEKLTILGHIRKYMKDGGILLVRSAKGA-RAFLYPVVV  253 (286)
Q Consensus       207 ~~aalvg~~~~~k~~vl~~l~~~l~pgg~lv~r~~~g~-r~~lyp~v~  253 (286)
                      +.+..-. .-++-..+.+++.+.|||+|++..=+.-|. +.+.|.+.+
T Consensus       174 ~yDTy~e-~yEdl~~~hqh~~rLLkP~gv~SyfNg~~~~~~~~~~vy~  220 (271)
T KOG1709|consen  174 YYDTYSE-LYEDLRHFHQHVVRLLKPEGVFSYFNGLGADNLMFYDVYK  220 (271)
T ss_pred             Eeechhh-HHHHHHHHHHHHhhhcCCCceEEEecCcccchhhhhhhhh
Confidence            9887632 336778899999999999999988765333 335555433

>COG0293 FtsJ 23S rRNA methylase [Translation, ribosomal structure and biogenesis]

Probab=97.12  E-value=0.0067  Score=53.87  Aligned_cols=137  Identities=19%  Similarity=0.176  Sum_probs=90.3

Q ss_pred             hcC-CCCCCEEEEeccCCChhhHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEccccchh------
Q 042119          125 ENG-VVQPKKVAFVGSGPMPLTSIIMAKHHLTSTHFDNFDIDEAANDVARSIVASDAEFEGRMKFLTRDIMEVK------  197 (286)
Q Consensus       125 ~~~-~~~~~~VL~IG~G~lp~tai~lA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~g~l~~~i~f~~~D~~~~~------  197 (286)
                      ++. .+++++|+|+|+-|+|-|- ..++...++..|++||+.|-.             .-..+.|+.+|.++-.      
T Consensus        39 k~~i~~~~~~ViDLGAAPGgWsQ-va~~~~~~~~~ivavDi~p~~-------------~~~~V~~iq~d~~~~~~~~~l~  104 (205)
T COG0293          39 KFKLFKPGMVVVDLGAAPGGWSQ-VAAKKLGAGGKIVAVDILPMK-------------PIPGVIFLQGDITDEDTLEKLL  104 (205)
T ss_pred             hcCeecCCCEEEEcCCCCCcHHH-HHHHHhCCCCcEEEEECcccc-------------cCCCceEEeeeccCccHHHHHH
Confidence            444 3788999999999998874 445545566779999999742             2245899999987532      


Q ss_pred             hcCC--Ccceeehhhh--c-cCC-------hhHHHHHHHHHHhhccCCcEEEEeecCccee--eecccCCcccc-cCcEE
Q 042119          198 EQLG--EYDCIFLAAL--V-GMS-------KEEKLTILGHIRKYMKDGGILLVRSAKGARA--FLYPVVVEHDL-LDFEV  262 (286)
Q Consensus       198 ~~l~--~fD~V~~aal--v-g~~-------~~~k~~vl~~l~~~l~pgg~lv~r~~~g~r~--~lyp~v~~~~l-~gf~~  262 (286)
                      ..++  .+|+|+.+..  + |..       ..-...+++-...+++|||.+++....|--.  +++      .+ ..|+.
T Consensus       105 ~~l~~~~~DvV~sD~ap~~~g~~~~Dh~r~~~L~~~a~~~a~~vL~~~G~fv~K~fqg~~~~~~l~------~~~~~F~~  178 (205)
T COG0293         105 EALGGAPVDVVLSDMAPNTSGNRSVDHARSMYLCELALEFALEVLKPGGSFVAKVFQGEDFEDLLK------ALRRLFRK  178 (205)
T ss_pred             HHcCCCCcceEEecCCCCcCCCccccHHHHHHHHHHHHHHHHHeeCCCCeEEEEEEeCCCHHHHHH------HHHHhhce
Confidence            2333  3699984321  1 221       1224455666777999999999987655211  111      12 47999


Q ss_pred             EEEecCcccceee---eEEEee
Q 042119          263 LSAVHPNDDVINS---VVLVRN  281 (286)
Q Consensus       263 ~~~~~P~~~vins---vi~~r~  281 (286)
                      +....|....-||   +++++.
T Consensus       179 v~~~KP~aSR~~S~E~y~v~~~  200 (205)
T COG0293         179 VKIFKPKASRKRSREIYLVAKG  200 (205)
T ss_pred             eEEecCccccCCCceEEEEEec
Confidence            9999998887776   555554

>PRK09260 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=97.12  E-value=0.0022  Score=59.27  Aligned_cols=100  Identities=17%  Similarity=0.199  Sum_probs=67.4

Q ss_pred             CEEEEeccCCChhhHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHh-------cCCCC--------CCeEEEEccccch
Q 042119          132 KKVAFVGSGPMPLTSIIMAKHHLTSTHFDNFDIDEAANDVARSIVAS-------DAEFE--------GRMKFLTRDIMEV  196 (286)
Q Consensus       132 ~~VL~IG~G~lp~tai~lA~~~~~g~~V~~iDid~~ai~~Ar~~~~~-------~g~l~--------~~i~f~~~D~~~~  196 (286)
                      ++|.+||+|.+|.+......  ..|.+|+.+|++++.++.+++.+..       .|.+.        .++++. .|.   
T Consensus         2 ~~V~VIG~G~mG~~iA~~la--~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~-~~~---   75 (288)
T PRK09260          2 EKLVVVGAGVMGRGIAYVFA--VSGFQTTLVDIKQEQLESAQQEIASIFEQGVARGKLTEAARQAALARLSYS-LDL---   75 (288)
T ss_pred             cEEEEECccHHHHHHHHHHH--hCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEEe-CcH---
Confidence            58999999998876443322  2688999999999999998764322       11000        123322 232   


Q ss_pred             hhcCCCcceeehhhhccCChhHHHHHHHHHHhhccCCcEEEEe
Q 042119          197 KEQLGEYDCIFLAALVGMSKEEKLTILGHIRKYMKDGGILLVR  239 (286)
Q Consensus       197 ~~~l~~fD~V~~aalvg~~~~~k~~vl~~l~~~l~pgg~lv~r  239 (286)
                      .....+.|+|+.+..  -+.+-|..++.++.+.++|+.+++..
T Consensus        76 ~~~~~~aD~Vi~avp--e~~~~k~~~~~~l~~~~~~~~il~~~  116 (288)
T PRK09260         76 KAAVADADLVIEAVP--EKLELKKAVFETADAHAPAECYIATN  116 (288)
T ss_pred             HHhhcCCCEEEEecc--CCHHHHHHHHHHHHhhCCCCcEEEEc
Confidence            233467899997743  34456888999999999998877554

>TIGR03451 mycoS_dep_FDH mycothiol-dependent formaldehyde dehydrogenase

Probab=97.11  E-value=0.0018  Score=61.25  Aligned_cols=100  Identities=19%  Similarity=0.128  Sum_probs=68.0

Q ss_pred             CCCCCCEEEEeccCCChhhHHHHHhhcCCCc-EEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEccccchhhc-C--CC
Q 042119          127 GVVQPKKVAFVGSGPMPLTSIIMAKHHLTST-HFDNFDIDEAANDVARSIVASDAEFEGRMKFLTRDIMEVKEQ-L--GE  202 (286)
Q Consensus       127 ~~~~~~~VL~IG~G~lp~tai~lA~~~~~g~-~V~~iDid~~ai~~Ar~~~~~~g~l~~~i~f~~~D~~~~~~~-l--~~  202 (286)
                      ...++++||..|+|++|..++.+|+.  .|+ +|+++|.+++..+.+++    +| ...-+.....|..+.... .  .+
T Consensus       173 ~~~~g~~VlV~G~g~vG~~a~~~ak~--~G~~~Vi~~~~~~~~~~~~~~----~G-a~~~i~~~~~~~~~~i~~~~~~~g  245 (358)
T TIGR03451       173 GVKRGDSVAVIGCGGVGDAAIAGAAL--AGASKIIAVDIDDRKLEWARE----FG-ATHTVNSSGTDPVEAIRALTGGFG  245 (358)
T ss_pred             CCCCCCEEEEECCCHHHHHHHHHHHH--cCCCeEEEEcCCHHHHHHHHH----cC-CceEEcCCCcCHHHHHHHHhCCCC
Confidence            45788999999999999999999994  688 49999999998888765    56 211122222222111111 1  25


Q ss_pred             cceeehhhhccCChhHHHHHHHHHHhhccCCcEEEEee
Q 042119          203 YDCIFLAALVGMSKEEKLTILGHIRKYMKDGGILLVRS  240 (286)
Q Consensus       203 fD~V~~aalvg~~~~~k~~vl~~l~~~l~pgg~lv~r~  240 (286)
                      +|+|+-+.  |.   +  ..++...+.+++||++++-.
T Consensus       246 ~d~vid~~--g~---~--~~~~~~~~~~~~~G~iv~~G  276 (358)
T TIGR03451       246 ADVVIDAV--GR---P--ETYKQAFYARDLAGTVVLVG  276 (358)
T ss_pred             CCEEEECC--CC---H--HHHHHHHHHhccCCEEEEEC
Confidence            99998543  31   1  35666778899999998764

Members of this protein family are mycothiol-dependent formaldehyde dehydrogenase (EC 1.2.1.66). This protein is found, so far, only in the Actinobacteria (Mycobacterium sp., Streptomyces sp., Corynebacterium sp., and related species), where mycothione replaces glutathione.

>PLN02740 Alcohol dehydrogenase-like

Probab=97.10  E-value=0.0019  Score=61.81  Aligned_cols=101  Identities=18%  Similarity=0.187  Sum_probs=68.0

Q ss_pred             cCCCCCCEEEEeccCCChhhHHHHHhhcCCCc-EEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEE--ccccchhhcC--
Q 042119          126 NGVVQPKKVAFVGSGPMPLTSIIMAKHHLTST-HFDNFDIDEAANDVARSIVASDAEFEGRMKFLT--RDIMEVKEQL--  200 (286)
Q Consensus       126 ~~~~~~~~VL~IG~G~lp~tai~lA~~~~~g~-~V~~iDid~~ai~~Ar~~~~~~g~l~~~i~f~~--~D~~~~~~~l--  200 (286)
                      ....++++||.+|+|++|+.++.+|+.  .|+ +|+++|.+++..+.+++    +| ...-++...  .|..+....+  
T Consensus       194 ~~~~~g~~VlV~G~G~vG~~a~q~ak~--~G~~~Vi~~~~~~~r~~~a~~----~G-a~~~i~~~~~~~~~~~~v~~~~~  266 (381)
T PLN02740        194 ANVQAGSSVAIFGLGAVGLAVAEGARA--RGASKIIGVDINPEKFEKGKE----MG-ITDFINPKDSDKPVHERIREMTG  266 (381)
T ss_pred             cCCCCCCEEEEECCCHHHHHHHHHHHH--CCCCcEEEEcCChHHHHHHHH----cC-CcEEEecccccchHHHHHHHHhC
Confidence            456889999999999999999999994  677 69999999999888866    56 222122211  0111111111  


Q ss_pred             CCcceeehhhhccCChhHHHHHHHHHHhhccCC-cEEEEee
Q 042119          201 GEYDCIFLAALVGMSKEEKLTILGHIRKYMKDG-GILLVRS  240 (286)
Q Consensus       201 ~~fD~V~~aalvg~~~~~k~~vl~~l~~~l~pg-g~lv~r~  240 (286)
                      +++|+|+.+.-.     .  ..+....+.+++| |++++-.
T Consensus       267 ~g~dvvid~~G~-----~--~~~~~a~~~~~~g~G~~v~~G  300 (381)
T PLN02740        267 GGVDYSFECAGN-----V--EVLREAFLSTHDGWGLTVLLG  300 (381)
T ss_pred             CCCCEEEECCCC-----h--HHHHHHHHhhhcCCCEEEEEc
Confidence            269999865431     1  3566666788886 8887755

>PF02384 N6_Mtase: N-6 DNA Methylase; InterPro: IPR003356 This domain is fpound in N-6 adenine-specific DNA methylase (2

Probab=97.09  E-value=0.0034  Score=58.44  Aligned_cols=125  Identities=14%  Similarity=0.165  Sum_probs=75.9

Q ss_pred             hhhhHHHHHHHHhcCCCCCCEEEEeccCCChhhHHHHHh-----hcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeE
Q 042119          113 VKLSKLEYTILSENGVVQPKKVAFVGSGPMPLTSIIMAK-----HHLTSTHFDNFDIDEAANDVARSIVASDAEFEGRMK  187 (286)
Q Consensus       113 ~~l~~~E~~~l~~~~~~~~~~VL~IG~G~lp~tai~lA~-----~~~~g~~V~~iDid~~ai~~Ar~~~~~~g~l~~~i~  187 (286)
                      ..+++.=..++   .+.++.+|+|-.||.+++-.-.+..     ......++.|+|+++.++.+|+-.+.-.|.-.....
T Consensus        32 ~~i~~l~~~~~---~~~~~~~VlDPacGsG~fL~~~~~~i~~~~~~~~~~~i~G~ei~~~~~~la~~nl~l~~~~~~~~~  108 (311)
T PF02384_consen   32 REIVDLMVKLL---NPKKGDSVLDPACGSGGFLVAAMEYIKEKRNKIKEINIYGIEIDPEAVALAKLNLLLHGIDNSNIN  108 (311)
T ss_dssp             HHHHHHHHHHH---TT-TTEEEEETT-TTSHHHHHHHHHHHTCHHHHCCEEEEEEES-HHHHHHHHHHHHHTTHHCBGCE
T ss_pred             HHHHHHHHhhh---hccccceeechhhhHHHHHHHHHHhhcccccccccceeEeecCcHHHHHHHHhhhhhhcccccccc
Confidence            44555444433   5567789999999987765444331     013689999999999999999987654452112356


Q ss_pred             EEEccccchhhc--CCCcceeehhhhccCC--------------------hhHHHHHHHHHHhhccCCcEEEEee
Q 042119          188 FLTRDIMEVKEQ--LGEYDCIFLAALVGMS--------------------KEEKLTILGHIRKYMKDGGILLVRS  240 (286)
Q Consensus       188 f~~~D~~~~~~~--l~~fD~V~~aalvg~~--------------------~~~k~~vl~~l~~~l~pgg~lv~r~  240 (286)
                      +..+|....+..  ...||+|+..--.+..                    ...-..++.++.+.|++||++++--
T Consensus       109 i~~~d~l~~~~~~~~~~~D~ii~NPPf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Fi~~~l~~Lk~~G~~~~Il  183 (311)
T PF02384_consen  109 IIQGDSLENDKFIKNQKFDVIIGNPPFGSKEWKDEELEKDERFKKYFPPKSNAEYAFIEHALSLLKPGGRAAIIL  183 (311)
T ss_dssp             EEES-TTTSHSCTST--EEEEEEE--CTCES-STGGGCTTCCCTTCSSSTTEHHHHHHHHHHHTEEEEEEEEEEE
T ss_pred             ccccccccccccccccccccccCCCCccccccccccccccccccccCCCccchhhhhHHHHHhhcccccceeEEe
Confidence            889998654433  2479998643211111                    0111358899999999999866543

1.1.72 from EC) from Type I and Type IC restriction systems. These enzymes are responsible for the methylation of specific DNA sequences in order to prevent the host from digesting its own genome via its restriction enzymes. These methylases have the same sequence specificity as their corresponding restriction enzymes. The type I restriction and modification system is composed of three polypeptides R, M and S. The M and S subunits together form a methyltransferase that methylates two adenine residues in complementary strands of a bipartite DNA recognition sequence. In the presence of the R subunit, the complex can also act as an endonuclease, binding to the same target sequence but cutting the DNA some distance from this site. Whether the DNA is cut or modified depends on the methylation state of the target sequence. When the target site is unmodified, the DNA is cut. When the target site is hemimethylated, the complex acts as a maintenance methyltransferase, modifying the DNA so that both strands become methylated.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2F8L_A 2Y7C_C 2Y7H_C 2AR0_B 3KHK_A 3LKD_A 2OKC_B.

>KOG2352 consensus Predicted spermine/spermidine synthase [Amino acid transport and metabolism]

Probab=97.02  E-value=0.0031  Score=62.23  Aligned_cols=126  Identities=17%  Similarity=0.231  Sum_probs=85.6

Q ss_pred             cccCcCccchhhhhHHHHHHHHhcCCCCCC-EEEEeccCCChhhHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCC
Q 042119          103 LSLFPYYGNYVKLSKLEYTILSENGVVQPK-KVAFVGSGPMPLTSIIMAKHHLTSTHFDNFDIDEAANDVARSIVASDAE  181 (286)
Q Consensus       103 L~~fpy~~ny~~l~~~E~~~l~~~~~~~~~-~VL~IG~G~lp~tai~lA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~g~  181 (286)
                      ...|-+|..|..+...-...+     .+-. +++.+|||.-.++   .-...-.--.||++|+|+-+++.....-.+.  
T Consensus        25 ~~~~ewY~~~l~l~~~i~~~~-----~p~~~~~l~lGCGNS~l~---e~ly~~G~~dI~~iD~S~V~V~~m~~~~~~~--   94 (482)
T KOG2352|consen   25 SDPFEWYGALLSLSGSIMKYL-----SPSDFKILQLGCGNSELS---EHLYKNGFEDITNIDSSSVVVAAMQVRNAKE--   94 (482)
T ss_pred             CChHHHHHHHHHHHHHHHHhh-----chhhceeEeecCCCCHHH---HHHHhcCCCCceeccccHHHHHHHHhccccC--
Confidence            345666666666654433322     3445 9999999964443   3321112356999999999999887765432  


Q ss_pred             CCCCeEEEEccccchhhcCCCcceeeh----hhhc-c----CChhHHHHHHHHHHhhccCCcEEEEe
Q 042119          182 FEGRMKFLTRDIMEVKEQLGEYDCIFL----AALV-G----MSKEEKLTILGHIRKYMKDGGILLVR  239 (286)
Q Consensus       182 l~~~i~f~~~D~~~~~~~l~~fD~V~~----aalv-g----~~~~~k~~vl~~l~~~l~pgg~lv~r  239 (286)
                       ..-+++.+.|.....++..+||+|+.    +++. +    ++...+...+.+++++++|||+.+.-
T Consensus        95 -~~~~~~~~~d~~~l~fedESFdiVIdkGtlDal~~de~a~~~~~~v~~~~~eVsrvl~~~gk~~sv  160 (482)
T KOG2352|consen   95 -RPEMQMVEMDMDQLVFEDESFDIVIDKGTLDALFEDEDALLNTAHVSNMLDEVSRVLAPGGKYISV  160 (482)
T ss_pred             -CcceEEEEecchhccCCCcceeEEEecCccccccCCchhhhhhHHhhHHHhhHHHHhccCCEEEEE
Confidence             25789999999988888888999863    3332 1    11234667899999999999986554

>PLN02545 3-hydroxybutyryl-CoA dehydrogenase

Probab=97.02  E-value=0.0041  Score=57.61  Aligned_cols=98  Identities=24%  Similarity=0.315  Sum_probs=66.8

Q ss_pred             CEEEEeccCCChhhHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHH-------hcCCCC--------CCeEEEEccccch
Q 042119          132 KKVAFVGSGPMPLTSIIMAKHHLTSTHFDNFDIDEAANDVARSIVA-------SDAEFE--------GRMKFLTRDIMEV  196 (286)
Q Consensus       132 ~~VL~IG~G~lp~tai~lA~~~~~g~~V~~iDid~~ai~~Ar~~~~-------~~g~l~--------~~i~f~~~D~~~~  196 (286)
                      ++|.+||+|.+|..-.....  ..|.+|+.+|.+++.++.+++.++       +.|.+.        .++++. .|.   
T Consensus         5 ~~V~vIG~G~mG~~iA~~l~--~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~-~~~---   78 (295)
T PLN02545          5 KKVGVVGAGQMGSGIAQLAA--AAGMDVWLLDSDPAALSRGLDSISSSLARLVKKGKMSQEEADATLGRIRCT-TNL---   78 (295)
T ss_pred             CEEEEECCCHHHHHHHHHHH--hcCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhceEee-CCH---
Confidence            68999999988865443322  368999999999999987766433       222111        122222 222   


Q ss_pred             hhcCCCcceeehhhhccCChhHHHHHHHHHHhhccCCcEEEE
Q 042119          197 KEQLGEYDCIFLAALVGMSKEEKLTILGHIRKYMKDGGILLV  238 (286)
Q Consensus       197 ~~~l~~fD~V~~aalvg~~~~~k~~vl~~l~~~l~pgg~lv~  238 (286)
                       ....+.|+|+.+..  .+.+.|..++.++.+.++|+.+|+.
T Consensus        79 -~~~~~aD~Vieav~--e~~~~k~~v~~~l~~~~~~~~il~s  117 (295)
T PLN02545         79 -EELRDADFIIEAIV--ESEDLKKKLFSELDRICKPSAILAS  117 (295)
T ss_pred             -HHhCCCCEEEEcCc--cCHHHHHHHHHHHHhhCCCCcEEEE
Confidence             23467899998743  3457899999999999999887763

>TIGR01202 bchC 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase

Probab=97.01  E-value=0.0018  Score=60.18  Aligned_cols=88  Identities=15%  Similarity=0.202  Sum_probs=62.0

Q ss_pred             CCCCEEEEeccCCChhhHHHHHhhcCCCcE-EEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEccccchhhcCCCcceee
Q 042119          129 VQPKKVAFVGSGPMPLTSIIMAKHHLTSTH-FDNFDIDEAANDVARSIVASDAEFEGRMKFLTRDIMEVKEQLGEYDCIF  207 (286)
Q Consensus       129 ~~~~~VL~IG~G~lp~tai~lA~~~~~g~~-V~~iDid~~ai~~Ar~~~~~~g~l~~~i~f~~~D~~~~~~~l~~fD~V~  207 (286)
                      .++++|+.+|+|++|+.++.+|+.  .|++ |..+|.+++.++.|.+.    + .   +     |..+.  .-.+||+||
T Consensus       143 ~~~~~vlV~G~G~vG~~a~q~ak~--~G~~~v~~~~~~~~rl~~a~~~----~-~---i-----~~~~~--~~~g~Dvvi  205 (308)
T TIGR01202       143 VKVLPDLIVGHGTLGRLLARLTKA--AGGSPPAVWETNPRRRDGATGY----E-V---L-----DPEKD--PRRDYRAIY  205 (308)
T ss_pred             cCCCcEEEECCCHHHHHHHHHHHH--cCCceEEEeCCCHHHHHhhhhc----c-c---c-----Chhhc--cCCCCCEEE
Confidence            457899999999999999999994  5776 67789998887666542    2 1   1     11110  113699999


Q ss_pred             hhhhccCChhHHHHHHHHHHhhccCCcEEEEee
Q 042119          208 LAALVGMSKEEKLTILGHIRKYMKDGGILLVRS  240 (286)
Q Consensus       208 ~aalvg~~~~~k~~vl~~l~~~l~pgg~lv~r~  240 (286)
                      .+.-.     +  ..++...+.|++||++++-.
T Consensus       206 d~~G~-----~--~~~~~~~~~l~~~G~iv~~G  231 (308)
T TIGR01202       206 DASGD-----P--SLIDTLVRRLAKGGEIVLAG  231 (308)
T ss_pred             ECCCC-----H--HHHHHHHHhhhcCcEEEEEe
Confidence            66431     2  35677888999999999764

>PRK05476 S-adenosyl-L-homocysteine hydrolase; Provisional

Probab=96.98  E-value=0.0039  Score=61.18  Aligned_cols=109  Identities=19%  Similarity=0.166  Sum_probs=72.9

Q ss_pred             ccchhhhhHHHHHHHHhc-CC-CCCCEEEEeccCCChhhHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCe
Q 042119          109 YGNYVKLSKLEYTILSEN-GV-VQPKKVAFVGSGPMPLTSIIMAKHHLTSTHFDNFDIDEAANDVARSIVASDAEFEGRM  186 (286)
Q Consensus       109 ~~ny~~l~~~E~~~l~~~-~~-~~~~~VL~IG~G~lp~tai~lA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~g~l~~~i  186 (286)
                      |+|-....+--+..+.+. .. ..+++|+.+|+|++|......++  ..|++|+.+|+|+.....|..    .| .    
T Consensus       188 ~dn~~gt~~s~~~ai~rat~~~l~Gk~VlViG~G~IG~~vA~~lr--~~Ga~ViV~d~dp~ra~~A~~----~G-~----  256 (425)
T PRK05476        188 FDNRYGTGESLLDGIKRATNVLIAGKVVVVAGYGDVGKGCAQRLR--GLGARVIVTEVDPICALQAAM----DG-F----  256 (425)
T ss_pred             ccccHHHHhhhHHHHHHhccCCCCCCEEEEECCCHHHHHHHHHHH--hCCCEEEEEcCCchhhHHHHh----cC-C----
Confidence            344444445455555555 33 47899999999999998888887  378999999999976544322    35 1    


Q ss_pred             EEEEccccchhhcCCCcceeehhhhccCChhHHHHHHH-HHHhhccCCcEEEEee
Q 042119          187 KFLTRDIMEVKEQLGEYDCIFLAALVGMSKEEKLTILG-HIRKYMKDGGILLVRS  240 (286)
Q Consensus       187 ~f~~~D~~~~~~~l~~fD~V~~aalvg~~~~~k~~vl~-~l~~~l~pgg~lv~r~  240 (286)
                      ++  .+..+   .+..+|+|+.+.  |    .+ .++. ...+.||+|++++.-.
T Consensus       257 ~v--~~l~e---al~~aDVVI~aT--G----~~-~vI~~~~~~~mK~GailiNvG  299 (425)
T PRK05476        257 RV--MTMEE---AAELGDIFVTAT--G----NK-DVITAEHMEAMKDGAILANIG  299 (425)
T ss_pred             Ee--cCHHH---HHhCCCEEEECC--C----CH-HHHHHHHHhcCCCCCEEEEcC
Confidence            11  23222   235789998653  2    33 3554 6788999999888764

>PRK10309 galactitol-1-phosphate dehydrogenase; Provisional

Probab=96.98  E-value=0.0037  Score=58.58  Aligned_cols=101  Identities=17%  Similarity=0.146  Sum_probs=67.2

Q ss_pred             cCCCCCCEEEEeccCCChhhHHHHHhhcCCCcE-EEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEccccchhhcC--CC
Q 042119          126 NGVVQPKKVAFVGSGPMPLTSIIMAKHHLTSTH-FDNFDIDEAANDVARSIVASDAEFEGRMKFLTRDIMEVKEQL--GE  202 (286)
Q Consensus       126 ~~~~~~~~VL~IG~G~lp~tai~lA~~~~~g~~-V~~iDid~~ai~~Ar~~~~~~g~l~~~i~f~~~D~~~~~~~l--~~  202 (286)
                      ....++++||..|+|++|..++.+|+.  .|++ |+++|.+++..+.+++    +| ...-+.....+..++....  ..
T Consensus       156 ~~~~~g~~vlV~G~g~vG~~~~~~a~~--~G~~~v~~~~~~~~~~~~~~~----~G-a~~~i~~~~~~~~~~~~~~~~~~  228 (347)
T PRK10309        156 AQGCEGKNVIIIGAGTIGLLAIQCAVA--LGAKSVTAIDINSEKLALAKS----LG-AMQTFNSREMSAPQIQSVLRELR  228 (347)
T ss_pred             cCCCCCCEEEEECCCHHHHHHHHHHHH--cCCCeEEEECCCHHHHHHHHH----cC-CceEecCcccCHHHHHHHhcCCC
Confidence            345788999999999999999999994  6886 7999999998887654    45 2111121111211111111  25


Q ss_pred             cc-eeehhhhccCChhHHHHHHHHHHhhccCCcEEEEee
Q 042119          203 YD-CIFLAALVGMSKEEKLTILGHIRKYMKDGGILLVRS  240 (286)
Q Consensus       203 fD-~V~~aalvg~~~~~k~~vl~~l~~~l~pgg~lv~r~  240 (286)
                      +| +||.+.  |    . ...+....+.|++||.+++-.
T Consensus       229 ~d~~v~d~~--G----~-~~~~~~~~~~l~~~G~iv~~G  260 (347)
T PRK10309        229 FDQLILETA--G----V-PQTVELAIEIAGPRAQLALVG  260 (347)
T ss_pred             CCeEEEECC--C----C-HHHHHHHHHHhhcCCEEEEEc
Confidence            78 666443  2    1 136777889999999998865

>TIGR02441 fa_ox_alpha_mit fatty acid oxidation complex, alpha subunit, mitochondrial

Probab=96.97  E-value=0.0049  Score=64.53  Aligned_cols=99  Identities=14%  Similarity=0.121  Sum_probs=73.3

Q ss_pred             CEEEEeccCCChhh-HHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhc-------CCCC--------CCeEEEEccccc
Q 042119          132 KKVAFVGSGPMPLT-SIIMAKHHLTSTHFDNFDIDEAANDVARSIVASD-------AEFE--------GRMKFLTRDIME  195 (286)
Q Consensus       132 ~~VL~IG~G~lp~t-ai~lA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~-------g~l~--------~~i~f~~~D~~~  195 (286)
                      ++|..||+|.+|-. +.++|.   .|.+|+-+|+++++++.+.+.+++.       |.+.        .++++. .|.  
T Consensus       336 ~~v~ViGaG~MG~gIA~~~a~---~G~~V~l~d~~~~~l~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~-~~~--  409 (737)
T TIGR02441       336 KTLAVLGAGLMGAGIAQVSVD---KGLKTVLKDATPAGLDRGQQQVFKGLNKKVKRKKITSLERDSILSNLTPT-LDY--  409 (737)
T ss_pred             cEEEEECCCHhHHHHHHHHHh---CCCcEEEecCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEEe-CCH--
Confidence            68999999999876 334444   7999999999999999987766532       2111        345443 222  


Q ss_pred             hhhcCCCcceeehhhhccCChhHHHHHHHHHHhhccCCcEEEEee
Q 042119          196 VKEQLGEYDCIFLAALVGMSKEEKLTILGHIRKYMKDGGILLVRS  240 (286)
Q Consensus       196 ~~~~l~~fD~V~~aalvg~~~~~k~~vl~~l~~~l~pgg~lv~r~  240 (286)
                        ..+.+.|+|+.+..  .+.+-|.+++.++-++++|+++|...+
T Consensus       410 --~~~~~aDlViEAv~--E~l~~K~~vf~~l~~~~~~~~ilasNT  450 (737)
T TIGR02441       410 --SGFKNADMVIEAVF--EDLSLKHKVIKEVEAVVPPHCIIASNT  450 (737)
T ss_pred             --HHhccCCeehhhcc--ccHHHHHHHHHHHHhhCCCCcEEEEcC
Confidence              24568999997743  356889999999999999999888754

Members represent alpha subunit of mitochondrial multifunctional fatty acid degradation enzyme complex. Subunit activities include: enoyl-CoA hydratase (EC 4.2.1.17) & 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35). Some characterization in human, pig, and rat. The beta subunit has activity: acetyl-CoA C-acyltransferase (EC 2.3.1.16).

>PF05219 DREV: DREV methyltransferase; InterPro: IPR007884 This family contains DREV protein homologues from several eukaryotes

Probab=96.95  E-value=0.0046  Score=56.77  Aligned_cols=94  Identities=20%  Similarity=0.266  Sum_probs=64.4

Q ss_pred             CCCEEEEeccCCChhhHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEccccchhhcCCCcceeehh
Q 042119          130 QPKKVAFVGSGPMPLTSIIMAKHHLTSTHFDNFDIDEAANDVARSIVASDAEFEGRMKFLTRDIMEVKEQLGEYDCIFLA  209 (286)
Q Consensus       130 ~~~~VL~IG~G~lp~tai~lA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~g~l~~~i~f~~~D~~~~~~~l~~fD~V~~a  209 (286)
                      ...++||||+|-++.| ..||. ++  .+|++-|.|+.|    |..+++-|     .+.+  |..+.......||+|-.-
T Consensus        94 ~~~~lLDlGAGdG~VT-~~l~~-~f--~~v~aTE~S~~M----r~rL~~kg-----~~vl--~~~~w~~~~~~fDvIscL  158 (265)
T PF05219_consen   94 KDKSLLDLGAGDGEVT-ERLAP-LF--KEVYATEASPPM----RWRLSKKG-----FTVL--DIDDWQQTDFKFDVISCL  158 (265)
T ss_pred             cCCceEEecCCCcHHH-HHHHh-hc--ceEEeecCCHHH----HHHHHhCC-----CeEE--ehhhhhccCCceEEEeeh
Confidence            5679999999976665 55676 34  559999999999    34455556     2333  333333322479998755


Q ss_pred             hhccCChhHHHHHHHHHHhhccCCcEEEEe
Q 042119          210 ALVGMSKEEKLTILGHIRKYMKDGGILLVR  239 (286)
Q Consensus       210 alvg~~~~~k~~vl~~l~~~l~pgg~lv~r  239 (286)
                      .+.--. .....+|++|++.++|+|++++.
T Consensus       159 NvLDRc-~~P~~LL~~i~~~l~p~G~lilA  187 (265)
T PF05219_consen  159 NVLDRC-DRPLTLLRDIRRALKPNGRLILA  187 (265)
T ss_pred             hhhhcc-CCHHHHHHHHHHHhCCCCEEEEE
Confidence            444111 35568999999999999999885

The function of this protein is unknown []. However, these proteins appear to be related to other methyltransferases.

>PRK06130 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=96.94  E-value=0.0056  Score=57.03  Aligned_cols=98  Identities=16%  Similarity=0.228  Sum_probs=63.7

Q ss_pred             CEEEEeccCCChhhHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHh-cCCC---------CCCeEEEEccccchhhcCC
Q 042119          132 KKVAFVGSGPMPLTSIIMAKHHLTSTHFDNFDIDEAANDVARSIVAS-DAEF---------EGRMKFLTRDIMEVKEQLG  201 (286)
Q Consensus       132 ~~VL~IG~G~lp~tai~lA~~~~~g~~V~~iDid~~ai~~Ar~~~~~-~g~l---------~~~i~f~~~D~~~~~~~l~  201 (286)
                      ++|.+||+|.+|.+......  ..|.+|+.+|.+++.++.+++.+.+ .|.+         ..++++ +.|.   ....+
T Consensus         5 ~~I~vIGaG~mG~~iA~~l~--~~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~-~~~~---~~~~~   78 (311)
T PRK06130          5 QNLAIIGAGTMGSGIAALFA--RKGLQVVLIDVMEGALERARGVIERALGVYAPLGIASAGMGRIRM-EAGL---AAAVS   78 (311)
T ss_pred             cEEEEECCCHHHHHHHHHHH--hCCCeEEEEECCHHHHHHHHHHHHHHHHHhhhcccHHHHhhceEE-eCCH---HHHhc
Confidence            68999999998876444333  3688999999999999988875322 1200         012332 2232   22345


Q ss_pred             CcceeehhhhccCChhHHHHHHHHHHhhccCCcEEE
Q 042119          202 EYDCIFLAALVGMSKEEKLTILGHIRKYMKDGGILL  237 (286)
Q Consensus       202 ~fD~V~~aalvg~~~~~k~~vl~~l~~~l~pgg~lv  237 (286)
                      +.|+|+++.--  +.+.|..++..+.+.++++.+++
T Consensus        79 ~aDlVi~av~~--~~~~~~~v~~~l~~~~~~~~ii~  112 (311)
T PRK06130         79 GADLVIEAVPE--KLELKRDVFARLDGLCDPDTIFA  112 (311)
T ss_pred             cCCEEEEeccC--cHHHHHHHHHHHHHhCCCCcEEE
Confidence            78999987431  22357889999988877766554

>cd08296 CAD_like Cinnamyl alcohol dehydrogenases (CAD)

Probab=96.91  E-value=0.0059  Score=56.88  Aligned_cols=102  Identities=18%  Similarity=0.173  Sum_probs=69.9

Q ss_pred             hcCCCCCCEEEEeccCCChhhHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEccccchhhcCCCcc
Q 042119          125 ENGVVQPKKVAFVGSGPMPLTSIIMAKHHLTSTHFDNFDIDEAANDVARSIVASDAEFEGRMKFLTRDIMEVKEQLGEYD  204 (286)
Q Consensus       125 ~~~~~~~~~VL~IG~G~lp~tai~lA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~g~l~~~i~f~~~D~~~~~~~l~~fD  204 (286)
                      .....++++|+..|+|++|..++.+|++  .|++|+.++.+++..+.+++    +| ...-+.....|..+....++.+|
T Consensus       158 ~~~~~~~~~vlV~g~g~iG~~~~~~a~~--~G~~vi~~~~~~~~~~~~~~----~g-~~~~i~~~~~~~~~~~~~~~~~d  230 (333)
T cd08296         158 NSGAKPGDLVAVQGIGGLGHLAVQYAAK--MGFRTVAISRGSDKADLARK----LG-AHHYIDTSKEDVAEALQELGGAK  230 (333)
T ss_pred             hcCCCCCCEEEEECCcHHHHHHHHHHHH--CCCeEEEEeCChHHHHHHHH----cC-CcEEecCCCccHHHHHHhcCCCC
Confidence            3455788999999999999999999994  78999999999888777754    45 21112222222222122235689


Q ss_pred             eeehhhhccCChhHHHHHHHHHHhhccCCcEEEEee
Q 042119          205 CIFLAALVGMSKEEKLTILGHIRKYMKDGGILLVRS  240 (286)
Q Consensus       205 ~V~~aalvg~~~~~k~~vl~~l~~~l~pgg~lv~r~  240 (286)
                      +|+.+.  |    . ...+....+.++++|.++.-.
T Consensus       231 ~vi~~~--g----~-~~~~~~~~~~l~~~G~~v~~g  259 (333)
T cd08296         231 LILATA--P----N-AKAISALVGGLAPRGKLLILG  259 (333)
T ss_pred             EEEECC--C----c-hHHHHHHHHHcccCCEEEEEe
Confidence            988432  1    1 136778889999999998754

Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catal

>TIGR00936 ahcY adenosylhomocysteinase

Probab=96.91  E-value=0.0049  Score=60.18  Aligned_cols=98  Identities=19%  Similarity=0.162  Sum_probs=66.3

Q ss_pred             HHHHHhc-C-CCCCCEEEEeccCCChhhHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEccccchh
Q 042119          120 YTILSEN-G-VVQPKKVAFVGSGPMPLTSIIMAKHHLTSTHFDNFDIDEAANDVARSIVASDAEFEGRMKFLTRDIMEVK  197 (286)
Q Consensus       120 ~~~l~~~-~-~~~~~~VL~IG~G~lp~tai~lA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~g~l~~~i~f~~~D~~~~~  197 (286)
                      +..+.+. + ...+++|+.+|+|+.|......++  ..|++|+++|.||.....|+    ..| .    .+  .+..+  
T Consensus       182 ~~~i~r~t~~~l~Gk~VvViG~G~IG~~vA~~ak--~~Ga~ViV~d~dp~r~~~A~----~~G-~----~v--~~lee--  246 (406)
T TIGR00936       182 IDGILRATNLLIAGKTVVVAGYGWCGKGIAMRAR--GMGARVIVTEVDPIRALEAA----MDG-F----RV--MTMEE--  246 (406)
T ss_pred             HHHHHHhcCCCCCcCEEEEECCCHHHHHHHHHHh--hCcCEEEEEeCChhhHHHHH----hcC-C----Ee--CCHHH--
Confidence            3444443 2 367899999999999999999888  47999999999997544333    245 1    11  22222  


Q ss_pred             hcCCCcceeehhhhccCChhHHHHHHH-HHHhhccCCcEEEEee
Q 042119          198 EQLGEYDCIFLAALVGMSKEEKLTILG-HIRKYMKDGGILLVRS  240 (286)
Q Consensus       198 ~~l~~fD~V~~aalvg~~~~~k~~vl~-~l~~~l~pgg~lv~r~  240 (286)
                       .+...|+|+.+.  |    .+ .++. +....||+|++++.-.
T Consensus       247 -al~~aDVVItaT--G----~~-~vI~~~~~~~mK~GailiN~G  282 (406)
T TIGR00936       247 -AAKIGDIFITAT--G----NK-DVIRGEHFENMKDGAIVANIG  282 (406)
T ss_pred             -HHhcCCEEEECC--C----CH-HHHHHHHHhcCCCCcEEEEEC
Confidence             235689988642  2    33 3454 4778999999888764

This enzyme hydrolyzes adenosylhomocysteine as part of a cycle for the regeneration of the methyl donor S-adenosylmethionine. Species that lack this enzyme are likely to have adenosylhomocysteine nucleosidase (EC 3.2.2.9), an enzyme which also acts as 5'-methyladenosine nucleosidase (see TIGR01704).

>PF00398 RrnaAD: Ribosomal RNA adenine dimethylase; InterPro: IPR001737 This family of proteins include rRNA adenine dimethylases (e

Probab=96.88  E-value=0.0042  Score=56.81  Aligned_cols=104  Identities=16%  Similarity=0.189  Sum_probs=67.2

Q ss_pred             hcCCCCCCEEEEeccCCChhhHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEccccchhhcC--CC
Q 042119          125 ENGVVQPKKVAFVGSGPMPLTSIIMAKHHLTSTHFDNFDIDEAANDVARSIVASDAEFEGRMKFLTRDIMEVKEQL--GE  202 (286)
Q Consensus       125 ~~~~~~~~~VL~IG~G~lp~tai~lA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~g~l~~~i~f~~~D~~~~~~~l--~~  202 (286)
                      ...+.++..|++||.|++-+|..+ ++   .+.+++++|+|+...+.-++...    ...+++++.+|+.++....  ..
T Consensus        25 ~~~~~~~~~VlEiGpG~G~lT~~L-~~---~~~~v~~vE~d~~~~~~L~~~~~----~~~~~~vi~~D~l~~~~~~~~~~   96 (262)
T PF00398_consen   25 ALDLSEGDTVLEIGPGPGALTREL-LK---RGKRVIAVEIDPDLAKHLKERFA----SNPNVEVINGDFLKWDLYDLLKN   96 (262)
T ss_dssp             HHTCGTTSEEEEESSTTSCCHHHH-HH---HSSEEEEEESSHHHHHHHHHHCT----TCSSEEEEES-TTTSCGGGHCSS
T ss_pred             hcCCCCCCEEEEeCCCCccchhhH-hc---ccCcceeecCcHhHHHHHHHHhh----hcccceeeecchhccccHHhhcC
Confidence            446678999999999987777655 44   34999999999999888887644    2368999999997654432  11


Q ss_pred             cceeehhhhccCChhHHHHHHHHHHhhccCC---cEEEEe
Q 042119          203 YDCIFLAALVGMSKEEKLTILGHIRKYMKDG---GILLVR  239 (286)
Q Consensus       203 fD~V~~aalvg~~~~~k~~vl~~l~~~l~pg---g~lv~r  239 (286)
                      -...+++.+ ...  --..++.++...-+.|   .++++.
T Consensus        97 ~~~~vv~Nl-Py~--is~~il~~ll~~~~~g~~~~~l~vq  133 (262)
T PF00398_consen   97 QPLLVVGNL-PYN--ISSPILRKLLELYRFGRVRMVLMVQ  133 (262)
T ss_dssp             SEEEEEEEE-TGT--GHHHHHHHHHHHGGGCEEEEEEEEE
T ss_pred             CceEEEEEe-ccc--chHHHHHHHhhcccccccceEEEEe
Confidence            223444443 222  2235777776643443   445554

g. KsgA) and the Erythromycin resistance methylases (Erm). The bacterial enzyme KsgA catalyses the transfer of a total of four methyl groups from S-adenosyl-l-methionine (S-AdoMet) to two adjacent adenosine bases in 16S rRNA. This enzyme and the resulting modified adenosine bases appear to be conserved in all species of eubacteria, eukaryotes, and archaea, and in eukaryotic organelles. Bacterial resistance to the aminoglycoside antibiotic kasugamycin involves inactivation of KsgA and resulting loss of the dimethylations, with modest consequences to the overall fitness of the organism. In contrast, the yeast ortholog, Dim1, is essential. In Saccharomyces cerevisiae (Baker's yeast), and presumably in other eukaryotes, the enzyme performs a vital role in pre-rRNA processing in addition to its methylating activity. The best conserved region in these enzymes is located in the N-terminal section and corresponds to a region that is probably involved in S-adenosyl methionine (SAM) binding domain. The crystal structure of KsgA from Escherichia coli has been solved to a resolution of 2.1A. It bears a strong similarity to the crystal structure of ErmC' from Bacillus stearothermophilus and a lesser similarity to the yeast mitochondrial transcription factor, sc-mtTFB []. The Erm family of RNA methyltransferases, which methylate a single adenosine base in 23S rRNA confer resistance to the MLS-B group of antibiotics. Despite their sequence similarity, the two enzyme families have strikingly different levels of regulation that remain to be elucidated. Other orthologs, of this family include the yeast and Homo sapiens (Human) mitochondrial transcription factors (MTF1 and h-mtTFB respectively), which are nuclear encoded []. Human-mtTFB is able to stimulate transcription in vitro independently of its S-adenosylmethionine binding and rRNA methyltransferase activity [].; GO: 0000179 rRNA (adenine-N6,N6-)-dimethyltransferase activity, 0008649 rRNA methyltransferase activity, 0000154 rRNA modification; PDB: 3FTF_A 3R9X_B 3FTE_A 3FTC_A 3FTD_A 3GRY_A 3FYC_A 3GRU_A 3FYD_A 3GRV_A ....

>PF02005 TRM: N2,N2-dimethylguanosine tRNA methyltransferase; InterPro: IPR002905 This enzyme 2

Probab=96.84  E-value=0.0051  Score=59.55  Aligned_cols=105  Identities=21%  Similarity=0.252  Sum_probs=78.3

Q ss_pred             CCCEEEEeccCCChhhHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCC-CeEEEEccccchhh-cCCCcceee
Q 042119          130 QPKKVAFVGSGPMPLTSIIMAKHHLTSTHFDNFDIDEAANDVARSIVASDAEFEG-RMKFLTRDIMEVKE-QLGEYDCIF  207 (286)
Q Consensus       130 ~~~~VL~IG~G~lp~tai~lA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~g~l~~-~i~f~~~D~~~~~~-~l~~fD~V~  207 (286)
                      .+-+|||.=||. |+=++..|+......+|+.-|+|++|++..+++++..| +++ +++..+.|+..+.. .-..||+|=
T Consensus        49 ~~~~~lDalaas-GvR~iRy~~E~~~~~~v~~NDi~~~a~~~i~~N~~~N~-~~~~~~~v~~~DAn~ll~~~~~~fD~ID  126 (377)
T PF02005_consen   49 GPIRVLDALAAS-GVRGIRYAKELAGVDKVTANDISPEAVELIKRNLELNG-LEDERIEVSNMDANVLLYSRQERFDVID  126 (377)
T ss_dssp             S-EEEEETT-TT-SHHHHHHHHH-SSECEEEEEES-HHHHHHHHHHHHHCT--SGCCEEEEES-HHHHHCHSTT-EEEEE
T ss_pred             CCceEEeccccc-cHHHHHHHHHcCCCCEEEEecCCHHHHHHHHHhHhhcc-ccCceEEEehhhHHHHhhhccccCCEEE
Confidence            456999999985 88889999842334689999999999999999999998 677 79999999977663 224799998


Q ss_pred             hhhhccCChhHHHHHHHHHHhhccCCcEEEEeec
Q 042119          208 LAALVGMSKEEKLTILGHIRKYMKDGGILLVRSA  241 (286)
Q Consensus       208 ~aalvg~~~~~k~~vl~~l~~~l~pgg~lv~r~~  241 (286)
                      ++-+ |    ....+++...+.++.||.|.+...
T Consensus       127 lDPf-G----Sp~pfldsA~~~v~~gGll~vTaT  155 (377)
T PF02005_consen  127 LDPF-G----SPAPFLDSALQAVKDGGLLCVTAT  155 (377)
T ss_dssp             E--S-S------HHHHHHHHHHEEEEEEEEEEE-
T ss_pred             eCCC-C----CccHhHHHHHHHhhcCCEEEEecc
Confidence            8866 3    445699999999999999999753

1.1.32 from EC uses S-adenosyl-L-methionine to methylate tRNA: S-AdoMet + tRNA = S-adenosyl-L-homocysteine + tRNA containing N2-methylguanine The TRM1 gene of Saccharomyces cerevisiae is necessary for the N2,N2-dimethylguanosine modification of both mitochondrial and cytoplasmic tRNAs []. The enzyme is found in both eukaryotes and archaea [].; GO: 0003723 RNA binding, 0004809 tRNA (guanine-N2-)-methyltransferase activity, 0008033 tRNA processing; PDB: 2YTZ_B 2DUL_A 2EJU_A 2EJT_A 3AXT_A 3AXS_A.

>KOG2187 consensus tRNA uracil-5-methyltransferase and related tRNA-modifying enzymes [Translation, ribosomal structure and biogenesis]

Probab=96.83  E-value=0.0019  Score=64.12  Aligned_cols=123  Identities=14%  Similarity=0.217  Sum_probs=82.2

Q ss_pred             cCccchhhhhHHHHHHHHh-cCCCCCCEEEEeccCCChhhHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCC
Q 042119          107 PYYGNYVKLSKLEYTILSE-NGVVQPKKVAFVGSGPMPLTSIIMAKHHLTSTHFDNFDIDEAANDVARSIVASDAEFEGR  185 (286)
Q Consensus       107 py~~ny~~l~~~E~~~l~~-~~~~~~~~VL~IG~G~lp~tai~lA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~g~l~~~  185 (286)
                      .+|++--..+..=+..++. ++...++-++|+=||+ |...+.+|+   +-.+|.||+++|++++-|++++...|.  .+
T Consensus       359 AFFQ~Nt~~aevLys~i~e~~~l~~~k~llDv~CGT-G~iglala~---~~~~ViGvEi~~~aV~dA~~nA~~Ngi--sN  432 (534)
T KOG2187|consen  359 AFFQTNTSAAEVLYSTIGEWAGLPADKTLLDVCCGT-GTIGLALAR---GVKRVIGVEISPDAVEDAEKNAQINGI--SN  432 (534)
T ss_pred             hhhccCcHHHHHHHHHHHHHhCCCCCcEEEEEeecC-Cceehhhhc---cccceeeeecChhhcchhhhcchhcCc--cc
Confidence            4444444444333333322 2567889999999995 788889998   678999999999999999999999995  78


Q ss_pred             eEEEEccccchhhcC-CC-c---c-eeehhh-hccCChhHHHHHHHHHHhhccCCcEEEEee
Q 042119          186 MKFLTRDIMEVKEQL-GE-Y---D-CIFLAA-LVGMSKEEKLTILGHIRKYMKDGGILLVRS  240 (286)
Q Consensus       186 i~f~~~D~~~~~~~l-~~-f---D-~V~~aa-lvg~~~~~k~~vl~~l~~~l~pgg~lv~r~  240 (286)
                      .+|++|-++++-..+ +. +   + +++++- -.|++  .  .++..++++-+|- ++++++
T Consensus       433 a~Fi~gqaE~~~~sl~~~~~~~~~~v~iiDPpR~Glh--~--~~ik~l~~~~~~~-rlvyvS  489 (534)
T KOG2187|consen  433 ATFIVGQAEDLFPSLLTPCCDSETLVAIIDPPRKGLH--M--KVIKALRAYKNPR-RLVYVS  489 (534)
T ss_pred             eeeeecchhhccchhcccCCCCCceEEEECCCccccc--H--HHHHHHHhccCcc-ceEEEE
Confidence            999999766654333 22 2   3 344442 23543  2  4777777764454 344444

>PLN03154 putative allyl alcohol dehydrogenase; Provisional

Probab=96.82  E-value=0.0058  Score=57.84  Aligned_cols=101  Identities=15%  Similarity=0.097  Sum_probs=68.9

Q ss_pred             cCCCCCCEEEEecc-CCChhhHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEc-cccchhhcC--C
Q 042119          126 NGVVQPKKVAFVGS-GPMPLTSIIMAKHHLTSTHFDNFDIDEAANDVARSIVASDAEFEGRMKFLTR-DIMEVKEQL--G  201 (286)
Q Consensus       126 ~~~~~~~~VL~IG~-G~lp~tai~lA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~g~l~~~i~f~~~-D~~~~~~~l--~  201 (286)
                      ..+.++++||..|+ |++|..++.+|+.  .|++|++++.+++..+.+++   .+| ...-+..... |..+.....  +
T Consensus       154 ~~~~~g~~VlV~GaaG~vG~~aiqlAk~--~G~~Vi~~~~~~~k~~~~~~---~lG-a~~vi~~~~~~~~~~~i~~~~~~  227 (348)
T PLN03154        154 CSPKKGDSVFVSAASGAVGQLVGQLAKL--HGCYVVGSAGSSQKVDLLKN---KLG-FDEAFNYKEEPDLDAALKRYFPE  227 (348)
T ss_pred             cCCCCCCEEEEecCccHHHHHHHHHHHH--cCCEEEEEcCCHHHHHHHHH---hcC-CCEEEECCCcccHHHHHHHHCCC
Confidence            34678999999998 9999999999994  78999999999988776653   256 2222222211 222211111  3


Q ss_pred             CcceeehhhhccCChhHHHHHHHHHHhhccCCcEEEEee
Q 042119          202 EYDCIFLAALVGMSKEEKLTILGHIRKYMKDGGILLVRS  240 (286)
Q Consensus       202 ~fD~V~~aalvg~~~~~k~~vl~~l~~~l~pgg~lv~r~  240 (286)
                      ++|+||-+.  |    .  ..+....+.+++||++++-.
T Consensus       228 gvD~v~d~v--G----~--~~~~~~~~~l~~~G~iv~~G  258 (348)
T PLN03154        228 GIDIYFDNV--G----G--DMLDAALLNMKIHGRIAVCG  258 (348)
T ss_pred             CcEEEEECC--C----H--HHHHHHHHHhccCCEEEEEC
Confidence            699998543  2    1  36677888999999998754

>KOG3045 consensus Predicted RNA methylase involved in rRNA processing [RNA processing and modification]

Probab=96.82  E-value=0.0035  Score=57.55  Aligned_cols=85  Identities=18%  Similarity=0.293  Sum_probs=64.5

Q ss_pred             CCCCEEEEeccCCChhhHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEccccchhhcCCCcceeeh
Q 042119          129 VQPKKVAFVGSGPMPLTSIIMAKHHLTSTHFDNFDIDEAANDVARSIVASDAEFEGRMKFLTRDIMEVKEQLGEYDCIFL  208 (286)
Q Consensus       129 ~~~~~VL~IG~G~lp~tai~lA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~g~l~~~i~f~~~D~~~~~~~l~~fD~V~~  208 (286)
                      ....-|+|+|||-.     -+|.  .....|+.+|+-+            .+   +  +++..|..++|.+.+..|++++
T Consensus       179 ~~~~vIaD~GCGEa-----kiA~--~~~~kV~SfDL~a------------~~---~--~V~~cDm~~vPl~d~svDvaV~  234 (325)
T KOG3045|consen  179 PKNIVIADFGCGEA-----KIAS--SERHKVHSFDLVA------------VN---E--RVIACDMRNVPLEDESVDVAVF  234 (325)
T ss_pred             cCceEEEecccchh-----hhhh--ccccceeeeeeec------------CC---C--ceeeccccCCcCccCcccEEEe
Confidence            44568999999953     3453  2457799999752            22   3  4567899998888889998766


Q ss_pred             h-hhccCChhHHHHHHHHHHhhccCCcEEEEee
Q 042119          209 A-ALVGMSKEEKLTILGHIRKYMKDGGILLVRS  240 (286)
Q Consensus       209 a-alvg~~~~~k~~vl~~l~~~l~pgg~lv~r~  240 (286)
                      + ++.|   .+-..++.+..|.|+|||.+-+..
T Consensus       235 CLSLMg---tn~~df~kEa~RiLk~gG~l~IAE  264 (325)
T KOG3045|consen  235 CLSLMG---TNLADFIKEANRILKPGGLLYIAE  264 (325)
T ss_pred             eHhhhc---ccHHHHHHHHHHHhccCceEEEEe
Confidence            5 4556   577899999999999999998865

>PRK08306 dipicolinate synthase subunit A; Reviewed

Probab=96.81  E-value=0.005  Score=57.54  Aligned_cols=92  Identities=15%  Similarity=0.135  Sum_probs=64.1

Q ss_pred             CCCCEEEEeccCCChhhHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEccccchhhcCCCcceeeh
Q 042119          129 VQPKKVAFVGSGPMPLTSIIMAKHHLTSTHFDNFDIDEAANDVARSIVASDAEFEGRMKFLTRDIMEVKEQLGEYDCIFL  208 (286)
Q Consensus       129 ~~~~~VL~IG~G~lp~tai~lA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~g~l~~~i~f~~~D~~~~~~~l~~fD~V~~  208 (286)
                      ..+++|+.||.|..|..++..+++  .|++|+.+|.+++..+.++    ..|.     ++.  +..++...+.++|+||.
T Consensus       150 l~g~kvlViG~G~iG~~~a~~L~~--~Ga~V~v~~r~~~~~~~~~----~~G~-----~~~--~~~~l~~~l~~aDiVI~  216 (296)
T PRK08306        150 IHGSNVLVLGFGRTGMTLARTLKA--LGANVTVGARKSAHLARIT----EMGL-----SPF--HLSELAEEVGKIDIIFN  216 (296)
T ss_pred             CCCCEEEEECCcHHHHHHHHHHHH--CCCEEEEEECCHHHHHHHH----HcCC-----eee--cHHHHHHHhCCCCEEEE
Confidence            368999999999999998888874  6899999999988755544    3552     222  12233444568999997


Q ss_pred             hhhccCChhHHHHHHHHHHhhccCCcEEEEee
Q 042119          209 AALVGMSKEEKLTILGHIRKYMKDGGILLVRS  240 (286)
Q Consensus       209 aalvg~~~~~k~~vl~~l~~~l~pgg~lv~r~  240 (286)
                      +.-.       .-+-+.+.+.|+||++++--.
T Consensus       217 t~p~-------~~i~~~~l~~~~~g~vIIDla  241 (296)
T PRK08306        217 TIPA-------LVLTKEVLSKMPPEALIIDLA  241 (296)
T ss_pred             CCCh-------hhhhHHHHHcCCCCcEEEEEc
Confidence            6321       123456677899998877443

>TIGR02825 B4_12hDH leukotriene B4 12-hydroxydehydrogenase/15-oxo-prostaglandin 13-reductase

Probab=96.80  E-value=0.0081  Score=55.70  Aligned_cols=100  Identities=17%  Similarity=0.180  Sum_probs=67.8

Q ss_pred             cCCCCCCEEEEec-cCCChhhHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEc-cccchhhcC--C
Q 042119          126 NGVVQPKKVAFVG-SGPMPLTSIIMAKHHLTSTHFDNFDIDEAANDVARSIVASDAEFEGRMKFLTR-DIMEVKEQL--G  201 (286)
Q Consensus       126 ~~~~~~~~VL~IG-~G~lp~tai~lA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~g~l~~~i~f~~~-D~~~~~~~l--~  201 (286)
                      ....++++||..| +|++|..++.+|++  .|++|++++.+++..+.+++    +| ...-+..... +..+.....  +
T Consensus       134 ~~~~~g~~VLI~ga~g~vG~~aiqlAk~--~G~~Vi~~~~s~~~~~~~~~----lG-a~~vi~~~~~~~~~~~~~~~~~~  206 (325)
T TIGR02825       134 CGVKGGETVMVNAAAGAVGSVVGQIAKL--KGCKVVGAAGSDEKVAYLKK----LG-FDVAFNYKTVKSLEETLKKASPD  206 (325)
T ss_pred             hCCCCCCEEEEeCCccHHHHHHHHHHHH--cCCEEEEEeCCHHHHHHHHH----cC-CCEEEeccccccHHHHHHHhCCC
Confidence            3567889999999 69999999999994  78999999999988777654    56 2211222111 121111111  3


Q ss_pred             CcceeehhhhccCChhHHHHHHHHHHhhccCCcEEEEee
Q 042119          202 EYDCIFLAALVGMSKEEKLTILGHIRKYMKDGGILLVRS  240 (286)
Q Consensus       202 ~fD~V~~aalvg~~~~~k~~vl~~l~~~l~pgg~lv~r~  240 (286)
                      ++|+||.+.  |    .  ..+....+.+++||+++.-.
T Consensus       207 gvdvv~d~~--G----~--~~~~~~~~~l~~~G~iv~~G  237 (325)
T TIGR02825       207 GYDCYFDNV--G----G--EFSNTVIGQMKKFGRIAICG  237 (325)
T ss_pred             CeEEEEECC--C----H--HHHHHHHHHhCcCcEEEEec
Confidence            699998542  2    1  24577889999999998754

Leukotriene B4 12-hydroxydehydrogenase is an NADP-dependent enzyme of arachidonic acid metabolism, responsible for converting leukotriene B4 to the much less active metabolite 12-oxo-leukotriene B4. The BRENDA database lists leukotriene B4 12-hydroxydehydrogenase as one of the synonyms of 2-alkenal reductase (EC 1.3.1.74), while 1.3.1.48 is 15-oxoprostaglandin 13-reductase.

>PLN02494 adenosylhomocysteinase

Probab=96.78  E-value=0.01  Score=58.84  Aligned_cols=147  Identities=14%  Similarity=0.102  Sum_probs=87.2

Q ss_pred             HHHHHHHHHHHHHHHhHhhhHHHHHHh---cCC------CCcccccccCcCccchhhhhHHHHHHHHhcC--CCCCCEEE
Q 042119           67 VQKMRESLIVLCGRAEGLLELEFATFL---TKI------PQPLNNLSLFPYYGNYVKLSKLEYTILSENG--VVQPKKVA  135 (286)
Q Consensus        67 ~~~l~~~l~~l~~~~e~~lE~~~A~~l---~~~------~~p~~~L~~fpy~~ny~~l~~~E~~~l~~~~--~~~~~~VL  135 (286)
                      -.++.+.++=.+-+-+.-.-+.++..-   +..      +.+.+++     |+|-..+-+--++.+.+..  ...+++|+
T Consensus       184 ~~~~~~~i~G~~EeTttGv~Rl~~m~~~g~L~~Pvi~vnds~~K~~-----fDn~yGtgqS~~d~i~r~t~i~LaGKtVv  258 (477)
T PLN02494        184 YHKMKERLVGVSEETTTGVKRLYQMQKNGTLLFPAINVNDSVTKSK-----FDNLYGCRHSLPDGLMRATDVMIAGKVAV  258 (477)
T ss_pred             hhHHHHhhcCCcccccHHHHHHHHHHHCCCCCCCEEEEcChhhhhh-----hhccccccccHHHHHHHhcCCccCCCEEE
Confidence            344555555555555444444444221   111      3444432     3333232222244444442  25789999


Q ss_pred             EeccCCChhhHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEccccchhhcCCCcceeehhhhccCC
Q 042119          136 FVGSGPMPLTSIIMAKHHLTSTHFDNFDIDEAANDVARSIVASDAEFEGRMKFLTRDIMEVKEQLGEYDCIFLAALVGMS  215 (286)
Q Consensus       136 ~IG~G~lp~tai~lA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~g~l~~~i~f~~~D~~~~~~~l~~fD~V~~aalvg~~  215 (286)
                      .+|+|++|......++  ..|++|+.+|+|+.....|..    .| ..    +.  +..+   .+...|+|+.+.     
T Consensus       259 ViGyG~IGr~vA~~ak--a~Ga~VIV~e~dp~r~~eA~~----~G-~~----vv--~leE---al~~ADVVI~tT-----  317 (477)
T PLN02494        259 ICGYGDVGKGCAAAMK--AAGARVIVTEIDPICALQALM----EG-YQ----VL--TLED---VVSEADIFVTTT-----  317 (477)
T ss_pred             EECCCHHHHHHHHHHH--HCCCEEEEEeCCchhhHHHHh----cC-Ce----ec--cHHH---HHhhCCEEEECC-----
Confidence            9999999999988888  368999999999876544433    45 21    11  2222   235689998642     


Q ss_pred             hhHHHHHHHHHHhhccCCcEEEEee
Q 042119          216 KEEKLTILGHIRKYMKDGGILLVRS  240 (286)
Q Consensus       216 ~~~k~~vl~~l~~~l~pgg~lv~r~  240 (286)
                       ..+.-+.....+.||+||+|+--.
T Consensus       318 -Gt~~vI~~e~L~~MK~GAiLiNvG  341 (477)
T PLN02494        318 -GNKDIIMVDHMRKMKNNAIVCNIG  341 (477)
T ss_pred             -CCccchHHHHHhcCCCCCEEEEcC
Confidence             233334477888999999998864

>PRK07502 cyclohexadienyl dehydrogenase; Validated

Probab=96.76  E-value=0.008  Score=56.05  Aligned_cols=93  Identities=18%  Similarity=0.176  Sum_probs=60.8

Q ss_pred             CEEEEeccCCChhhHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEccccchhhcCCCcceeehhhh
Q 042119          132 KKVAFVGSGPMPLTSIIMAKHHLTSTHFDNFDIDEAANDVARSIVASDAEFEGRMKFLTRDIMEVKEQLGEYDCIFLAAL  211 (286)
Q Consensus       132 ~~VL~IG~G~lp~tai~lA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~g~l~~~i~f~~~D~~~~~~~l~~fD~V~~aal  211 (286)
                      ++|..||+|.+|.+.....+......+|+++|.+++..+.+++    .| ....   ...+.   ...+.+.|+|+++.-
T Consensus         7 ~~I~IIG~G~mG~sla~~l~~~g~~~~V~~~dr~~~~~~~a~~----~g-~~~~---~~~~~---~~~~~~aDvViiavp   75 (307)
T PRK07502          7 DRVALIGIGLIGSSLARAIRRLGLAGEIVGADRSAETRARARE----LG-LGDR---VTTSA---AEAVKGADLVILCVP   75 (307)
T ss_pred             cEEEEEeeCHHHHHHHHHHHhcCCCcEEEEEECCHHHHHHHHh----CC-CCce---ecCCH---HHHhcCCCEEEECCC
Confidence            6899999998887654433321112489999999998776653    45 2111   12222   223457899998754


Q ss_pred             ccCChhHHHHHHHHHHhhccCCcEEEEe
Q 042119          212 VGMSKEEKLTILGHIRKYMKDGGILLVR  239 (286)
Q Consensus       212 vg~~~~~k~~vl~~l~~~l~pgg~lv~r  239 (286)
                      .    .....+++.+...++||++++.-
T Consensus        76 ~----~~~~~v~~~l~~~l~~~~iv~dv   99 (307)
T PRK07502         76 V----GASGAVAAEIAPHLKPGAIVTDV   99 (307)
T ss_pred             H----HHHHHHHHHHHhhCCCCCEEEeC
Confidence            3    34567888888889999876553

>COG1062 AdhC Zn-dependent alcohol dehydrogenases, class III [Energy production and conversion]

Probab=96.76  E-value=0.006  Score=57.98  Aligned_cols=101  Identities=19%  Similarity=0.179  Sum_probs=70.8

Q ss_pred             CCCCCCEEEEeccCCChhhHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEc-cccchhhcCC--Cc
Q 042119          127 GVVQPKKVAFVGSGPMPLTSIIMAKHHLTSTHFDNFDIDEAANDVARSIVASDAEFEGRMKFLTR-DIMEVKEQLG--EY  203 (286)
Q Consensus       127 ~~~~~~~VL~IG~G~lp~tai~lA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~g~l~~~i~f~~~-D~~~~~~~l~--~f  203 (286)
                      .+.++++|+.+|+|..|++++.-|+ ...-.+|++||++++..++|+++    | ..+-++-... |+.+...++.  +.
T Consensus       182 ~v~~G~tvaV~GlGgVGlaaI~gA~-~agA~~IiAvD~~~~Kl~~A~~f----G-AT~~vn~~~~~~vv~~i~~~T~gG~  255 (366)
T COG1062         182 KVEPGDTVAVFGLGGVGLAAIQGAK-AAGAGRIIAVDINPEKLELAKKF----G-ATHFVNPKEVDDVVEAIVELTDGGA  255 (366)
T ss_pred             cCCCCCeEEEEeccHhHHHHHHHHH-HcCCceEEEEeCCHHHHHHHHhc----C-CceeecchhhhhHHHHHHHhcCCCC
Confidence            3589999999999999999999998 45567899999999999999984    5 2222221111 4444333332  68


Q ss_pred             ceeehhhhccCChhHHHHHHHHHHhhccCCcEEEEee
Q 042119          204 DCIFLAALVGMSKEEKLTILGHIRKYMKDGGILLVRS  240 (286)
Q Consensus       204 D~V~~aalvg~~~~~k~~vl~~l~~~l~pgg~lv~r~  240 (286)
                      |.+|.+.-      .. ++++.-.....++|..++-.
T Consensus       256 d~~~e~~G------~~-~~~~~al~~~~~~G~~v~iG  285 (366)
T COG1062         256 DYAFECVG------NV-EVMRQALEATHRGGTSVIIG  285 (366)
T ss_pred             CEEEEccC------CH-HHHHHHHHHHhcCCeEEEEe
Confidence            99886542      22 36666666777789887754

>TIGR02818 adh_III_F_hyde S-(hydroxymethyl)glutathione dehydrogenase/class III alcohol dehydrogenase

Probab=96.74  E-value=0.0057  Score=58.20  Aligned_cols=101  Identities=20%  Similarity=0.213  Sum_probs=67.4

Q ss_pred             cCCCCCCEEEEeccCCChhhHHHHHhhcCCCc-EEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEE--ccccchhhcC--
Q 042119          126 NGVVQPKKVAFVGSGPMPLTSIIMAKHHLTST-HFDNFDIDEAANDVARSIVASDAEFEGRMKFLT--RDIMEVKEQL--  200 (286)
Q Consensus       126 ~~~~~~~~VL~IG~G~lp~tai~lA~~~~~g~-~V~~iDid~~ai~~Ar~~~~~~g~l~~~i~f~~--~D~~~~~~~l--  200 (286)
                      ..+.++++||..|+|++|+.++.+|+.  .|+ +|+++|.+++..+.+++    +| ...-+....  .+..+....+  
T Consensus       181 ~~~~~g~~VlV~G~G~iG~~a~q~Ak~--~G~~~Vi~~~~~~~~~~~a~~----~G-a~~~i~~~~~~~~~~~~v~~~~~  253 (368)
T TIGR02818       181 AKVEEGDTVAVFGLGGIGLSVIQGARM--AKASRIIAIDINPAKFELAKK----LG-ATDCVNPNDYDKPIQEVIVEITD  253 (368)
T ss_pred             cCCCCCCEEEEECCCHHHHHHHHHHHH--cCCCeEEEEcCCHHHHHHHHH----hC-CCeEEcccccchhHHHHHHHHhC
Confidence            456789999999999999999999994  677 79999999998888866    45 222222211  1111111111  


Q ss_pred             CCcceeehhhhccCChhHHHHHHHHHHhhccCC-cEEEEee
Q 042119          201 GEYDCIFLAALVGMSKEEKLTILGHIRKYMKDG-GILLVRS  240 (286)
Q Consensus       201 ~~fD~V~~aalvg~~~~~k~~vl~~l~~~l~pg-g~lv~r~  240 (286)
                      +++|+|+.+.-.       ...+....+.+++| |+++.-.
T Consensus       254 ~g~d~vid~~G~-------~~~~~~~~~~~~~~~G~~v~~g  287 (368)
T TIGR02818       254 GGVDYSFECIGN-------VNVMRAALECCHKGWGESIIIG  287 (368)
T ss_pred             CCCCEEEECCCC-------HHHHHHHHHHhhcCCCeEEEEe
Confidence            269999865321       13566677788886 8887654

The members of this protein family show dual function. First, they remove formaldehyde, a toxic metabolite, by acting as S-(hydroxymethyl)glutathione dehydrogenase (1.1.1.284). S-(hydroxymethyl)glutathione can form spontaneously from formaldehyde and glutathione, and so this enzyme previously was designated glutathione-dependent formaldehyde dehydrogenase. These same proteins are also designated alcohol dehydrogenase (EC 1.1.1.1) of class III, for activities that do not require glutathione; they tend to show poor activity for ethanol among their various substrate alcohols.

>PLN02586 probable cinnamyl alcohol dehydrogenase

Probab=96.72  E-value=0.0085  Score=56.96  Aligned_cols=98  Identities=15%  Similarity=0.207  Sum_probs=64.4

Q ss_pred             CCCCCEEEEeccCCChhhHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEccccchhhcCCCcceee
Q 042119          128 VVQPKKVAFVGSGPMPLTSIIMAKHHLTSTHFDNFDIDEAANDVARSIVASDAEFEGRMKFLTRDIMEVKEQLGEYDCIF  207 (286)
Q Consensus       128 ~~~~~~VL~IG~G~lp~tai~lA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~g~l~~~i~f~~~D~~~~~~~l~~fD~V~  207 (286)
                      ..++++||..|+|++|+.++.+|+.  .|++|+++|.+++...   +.++++| . +.+ +...+...+....+.+|+||
T Consensus       181 ~~~g~~VlV~G~G~vG~~avq~Ak~--~Ga~vi~~~~~~~~~~---~~~~~~G-a-~~v-i~~~~~~~~~~~~~~~D~vi  252 (360)
T PLN02586        181 TEPGKHLGVAGLGGLGHVAVKIGKA--FGLKVTVISSSSNKED---EAINRLG-A-DSF-LVSTDPEKMKAAIGTMDYII  252 (360)
T ss_pred             cCCCCEEEEECCCHHHHHHHHHHHH--CCCEEEEEeCCcchhh---hHHHhCC-C-cEE-EcCCCHHHHHhhcCCCCEEE
Confidence            3678999999999999999999994  7899999998876432   2233466 2 111 11111111222223689999


Q ss_pred             hhhhccCChhHHHHHHHHHHhhccCCcEEEEee
Q 042119          208 LAALVGMSKEEKLTILGHIRKYMKDGGILLVRS  240 (286)
Q Consensus       208 ~aalvg~~~~~k~~vl~~l~~~l~pgg~lv~r~  240 (286)
                      .+...     .  ..++...+.+++||+++.-.
T Consensus       253 d~~g~-----~--~~~~~~~~~l~~~G~iv~vG  278 (360)
T PLN02586        253 DTVSA-----V--HALGPLLGLLKVNGKLITLG  278 (360)
T ss_pred             ECCCC-----H--HHHHHHHHHhcCCcEEEEeC
Confidence            55321     1  25677888999999998754

>PRK11730 fadB multifunctional fatty acid oxidation complex subunit alpha; Reviewed

Probab=96.70  E-value=0.0092  Score=62.28  Aligned_cols=100  Identities=17%  Similarity=0.172  Sum_probs=72.5

Q ss_pred             CEEEEeccCCChhhHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHh-------cCCC--------CCCeEEEEccccch
Q 042119          132 KKVAFVGSGPMPLTSIIMAKHHLTSTHFDNFDIDEAANDVARSIVAS-------DAEF--------EGRMKFLTRDIMEV  196 (286)
Q Consensus       132 ~~VL~IG~G~lp~tai~lA~~~~~g~~V~~iDid~~ai~~Ar~~~~~-------~g~l--------~~~i~f~~~D~~~~  196 (286)
                      ++|..||+|.+|-.-..+..  ..|.+|+-+|+++++++.+++.+++       .|.+        -.++++. .|.   
T Consensus       314 ~~v~ViGaG~mG~gIA~~~a--~~G~~V~l~d~~~~~l~~~~~~~~~~l~~~~~~g~~~~~~~~~~~~~i~~~-~~~---  387 (715)
T PRK11730        314 KQAAVLGAGIMGGGIAYQSA--SKGVPVIMKDINQKALDLGMTEAAKLLNKQVERGKIDGAKMAGVLSSIRPT-LDY---  387 (715)
T ss_pred             ceEEEECCchhHHHHHHHHH--hCCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhHHHHHhCeEEe-CCH---
Confidence            68999999998876443332  3799999999999999988766532       1111        1345543 222   


Q ss_pred             hhcCCCcceeehhhhccCChhHHHHHHHHHHhhccCCcEEEEee
Q 042119          197 KEQLGEYDCIFLAALVGMSKEEKLTILGHIRKYMKDGGILLVRS  240 (286)
Q Consensus       197 ~~~l~~fD~V~~aalvg~~~~~k~~vl~~l~~~l~pgg~lv~r~  240 (286)
                       .++.+.|+|+.+.  ..+.+-|.+++.++-+.++|+.+|...+
T Consensus       388 -~~~~~aDlViEav--~E~l~~K~~vf~~l~~~~~~~~ilasNT  428 (715)
T PRK11730        388 -AGFERVDVVVEAV--VENPKVKAAVLAEVEQKVREDTILASNT  428 (715)
T ss_pred             -HHhcCCCEEEecc--cCcHHHHHHHHHHHHhhCCCCcEEEEcC
Confidence             3456899999774  3466899999999999999998887754

>cd08283 FDH_like_1 Glutathione-dependent formaldehyde dehydrogenase related proteins, child 1

Probab=96.69  E-value=0.0076  Score=57.71  Aligned_cols=108  Identities=20%  Similarity=0.202  Sum_probs=72.3

Q ss_pred             CCCCCCEEEEeccCCChhhHHHHHhhcCCCc-EEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEcc-ccc-hhhcC--C
Q 042119          127 GVVQPKKVAFVGSGPMPLTSIIMAKHHLTST-HFDNFDIDEAANDVARSIVASDAEFEGRMKFLTRD-IME-VKEQL--G  201 (286)
Q Consensus       127 ~~~~~~~VL~IG~G~lp~tai~lA~~~~~g~-~V~~iDid~~ai~~Ar~~~~~~g~l~~~i~f~~~D-~~~-~~~~l--~  201 (286)
                      ...++.+||.+|+|++|..++.+|++  .|. +|+++|.+++..+.+++..   + . ..+.+...+ ..+ +....  .
T Consensus       181 ~~~~g~~VlV~g~G~vG~~~~~la~~--~g~~~vi~~~~~~~~~~~~~~~~---~-~-~vi~~~~~~~~~~~l~~~~~~~  253 (386)
T cd08283         181 EVKPGDTVAVWGCGPVGLFAARSAKL--LGAERVIAIDRVPERLEMARSHL---G-A-ETINFEEVDDVVEALRELTGGR  253 (386)
T ss_pred             cCCCCCEEEEECCCHHHHHHHHHHHH--cCCCEEEEEcCCHHHHHHHHHcC---C-c-EEEcCCcchHHHHHHHHHcCCC
Confidence            45678999999999999999999994  566 6999999999998888752   3 1 222222221 111 11111  2


Q ss_pred             Ccceeehhhhcc--------------CChhHHHHHHHHHHhhccCCcEEEEeec
Q 042119          202 EYDCIFLAALVG--------------MSKEEKLTILGHIRKYMKDGGILLVRSA  241 (286)
Q Consensus       202 ~fD~V~~aalvg--------------~~~~~k~~vl~~l~~~l~pgg~lv~r~~  241 (286)
                      .+|+|+-+..-.              .+..++...++.+.+.|+|+|.++.-..
T Consensus       254 ~~D~vld~vg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~G~iv~~g~  307 (386)
T cd08283         254 GPDVCIDAVGMEAHGSPLHKAEQALLKLETDRPDALREAIQAVRKGGTVSIIGV  307 (386)
T ss_pred             CCCEEEECCCCcccccccccccccccccccCchHHHHHHHHHhccCCEEEEEcC
Confidence            599988643100              0112345688999999999999998763

Members identified as glutathione-dependent formaldehyde dehydrogenase(FDH), a member of the zinc-dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like many zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these FDHs form dimers, with 4 zinc ions per dimer. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. T

>KOG1562 consensus Spermidine synthase [Amino acid transport and metabolism]

Probab=96.69  E-value=0.0082  Score=56.05  Aligned_cols=167  Identities=21%  Similarity=0.291  Sum_probs=113.5

Q ss_pred             cCCCCcccccccCcCccchhhhhHHHHHHHHhcCCCCCCEEEEeccCCChhhHHHHHhhcCCCcEEEEEeCChHHHHHHH
Q 042119           94 TKIPQPLNNLSLFPYYGNYVKLSKLEYTILSENGVVQPKKVAFVGSGPMPLTSIIMAKHHLTSTHFDNFDIDEAANDVAR  173 (286)
Q Consensus        94 ~~~~~p~~~L~~fpy~~ny~~l~~~E~~~l~~~~~~~~~~VL~IG~G~lp~tai~lA~~~~~g~~V~~iDid~~ai~~Ar  173 (286)
                      +++-.-+.....|.|-+-|-.+.--        ....|++|+.||.|-+|.--+.. + |..=..++-+|+|...++.++
T Consensus        93 lDgviqlte~de~~Yqemi~~l~l~--------s~~npkkvlVVgggDggvlrevi-k-H~~ve~i~~~eiD~~Vie~sk  162 (337)
T KOG1562|consen   93 LDGVIQLTERDEFAYQEMIAHLALC--------SHPNPKKVLVVGGGDGGVLREVI-K-HKSVENILLCEIDENVIESSK  162 (337)
T ss_pred             eCCeeeCCccccccceeeeeccccc--------cCCCCCeEEEEecCCccceeeee-c-cccccceeeehhhHHHHHHHH
Confidence            3343333455578887766655431        24688999999999888754443 3 334467899999999999999


Q ss_pred             HHHHhc--CCCCCCeEEEEccccchhhcC--CCcceeehhhh--ccCChhH--HHHHHHHHHhhccCCcEEEEeec----
Q 042119          174 SIVASD--AEFEGRMKFLTRDIMEVKEQL--GEYDCIFLAAL--VGMSKEE--KLTILGHIRKYMKDGGILLVRSA----  241 (286)
Q Consensus       174 ~~~~~~--g~l~~~i~f~~~D~~~~~~~l--~~fD~V~~aal--vg~~~~~--k~~vl~~l~~~l~pgg~lv~r~~----  241 (286)
                      +....+  |.-++++.++-||...+....  +.||+|++++-  +| ++..  ...+++.+.+.||+||++++...    
T Consensus       163 ~y~p~la~gy~~~~v~l~iGDG~~fl~~~~~~~~dVii~dssdpvg-pa~~lf~~~~~~~v~~aLk~dgv~~~q~ec~wl  241 (337)
T KOG1562|consen  163 QYLPTLACGYEGKKVKLLIGDGFLFLEDLKENPFDVIITDSSDPVG-PACALFQKPYFGLVLDALKGDGVVCTQGECMWL  241 (337)
T ss_pred             HHhHHHhcccCCCceEEEeccHHHHHHHhccCCceEEEEecCCccc-hHHHHHHHHHHHHHHHhhCCCcEEEEecceehH
Confidence            987653  423579999999998887766  46999998763  32 3333  24688899999999999999641    


Q ss_pred             -----Ccceee--------ecccCCcc----cccCcEEEEEecCccc
Q 042119          242 -----KGARAF--------LYPVVVEH----DLLDFEVLSAVHPNDD  271 (286)
Q Consensus       242 -----~g~r~~--------lyp~v~~~----~l~gf~~~~~~~P~~~  271 (286)
                           +-+|+|        .||.....    ...||..+....|..+
T Consensus       242 ~~~~i~e~r~~~~~~f~~t~ya~ttvPTypsg~igf~l~s~~~~~~~  288 (337)
T KOG1562|consen  242 HLDYIKEGRSFCYVIFDLTAYAITTVPTYPSGRIGFMLCSKLKPDGK  288 (337)
T ss_pred             HHHHHHHHHHhHHHhcCccceeeecCCCCccceEEEEEecccCCCCC
Confidence                 223444        34433321    2248888776666654

>PRK11154 fadJ multifunctional fatty acid oxidation complex subunit alpha; Reviewed

Probab=96.68  E-value=0.01  Score=61.84  Aligned_cols=101  Identities=14%  Similarity=0.057  Sum_probs=73.4

Q ss_pred             CCEEEEeccCCChhhHHH-HHhhcCCCcEEEEEeCChHHHHHHHHHHHhc-------CCC--------CCCeEEEEcccc
Q 042119          131 PKKVAFVGSGPMPLTSII-MAKHHLTSTHFDNFDIDEAANDVARSIVASD-------AEF--------EGRMKFLTRDIM  194 (286)
Q Consensus       131 ~~~VL~IG~G~lp~tai~-lA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~-------g~l--------~~~i~f~~~D~~  194 (286)
                      -++|..||+|.+|-.-.. +|+  ..|..|+.+|.++++++.+++.+++.       |.+        ..++++. .|  
T Consensus       309 i~~v~ViGaG~mG~giA~~~a~--~~G~~V~l~d~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~-~~--  383 (708)
T PRK11154        309 VNKVGVLGGGLMGGGIAYVTAT--KAGLPVRIKDINPQGINHALKYSWDLLDKKVKRRHLKPSERDKQMALISGT-TD--  383 (708)
T ss_pred             ccEEEEECCchhhHHHHHHHHH--HcCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhcEEEe-CC--
Confidence            478999999998865433 342  37999999999999999987765431       211        1345543 12  


Q ss_pred             chhhcCCCcceeehhhhccCChhHHHHHHHHHHhhccCCcEEEEee
Q 042119          195 EVKEQLGEYDCIFLAALVGMSKEEKLTILGHIRKYMKDGGILLVRS  240 (286)
Q Consensus       195 ~~~~~l~~fD~V~~aalvg~~~~~k~~vl~~l~~~l~pgg~lv~r~  240 (286)
                       . ..+.+.|+|+.+..  .+.+-|.+++.++-++++|+.+|...+
T Consensus       384 -~-~~~~~aDlViEav~--E~~~~K~~v~~~le~~~~~~~ilasnT  425 (708)
T PRK11154        384 -Y-RGFKHADVVIEAVF--EDLALKQQMVAEVEQNCAPHTIFASNT  425 (708)
T ss_pred             -h-HHhccCCEEeeccc--ccHHHHHHHHHHHHhhCCCCcEEEECC
Confidence             2 34568999997743  466889999999999999999887754

>TIGR02437 FadB fatty oxidation complex, alpha subunit FadB

Probab=96.68  E-value=0.0079  Score=62.76  Aligned_cols=102  Identities=16%  Similarity=0.154  Sum_probs=73.1

Q ss_pred             CCCEEEEeccCCChhhHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhc-------CCC--------CCCeEEEEcccc
Q 042119          130 QPKKVAFVGSGPMPLTSIIMAKHHLTSTHFDNFDIDEAANDVARSIVASD-------AEF--------EGRMKFLTRDIM  194 (286)
Q Consensus       130 ~~~~VL~IG~G~lp~tai~lA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~-------g~l--------~~~i~f~~~D~~  194 (286)
                      +-++|..||+|.+|-.-.....  ..|.+|+-+|+++++++.+++.+++.       |.+        -.++++. .|  
T Consensus       312 ~i~~v~ViGaG~mG~gIA~~~a--~~G~~V~l~d~~~~~l~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~-~~--  386 (714)
T TIGR02437       312 DVKQAAVLGAGIMGGGIAYQSA--SKGTPIVMKDINQHSLDLGLTEAAKLLNKQVERGRITPAKMAGVLNGITPT-LS--  386 (714)
T ss_pred             ccceEEEECCchHHHHHHHHHH--hCCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhHHHHHhCeEEe-CC--
Confidence            3468999999999865443332  37999999999999999887765421       101        1244442 12  


Q ss_pred             chhhcCCCcceeehhhhccCChhHHHHHHHHHHhhccCCcEEEEee
Q 042119          195 EVKEQLGEYDCIFLAALVGMSKEEKLTILGHIRKYMKDGGILLVRS  240 (286)
Q Consensus       195 ~~~~~l~~fD~V~~aalvg~~~~~k~~vl~~l~~~l~pgg~lv~r~  240 (286)
                       . .++.+.|+|+.+..  .+.+-|.+++.++-+.++|+++|...+
T Consensus       387 -~-~~~~~aDlViEav~--E~l~~K~~vf~~l~~~~~~~~ilasnT  428 (714)
T TIGR02437       387 -Y-AGFDNVDIVVEAVV--ENPKVKAAVLAEVEQHVREDAILASNT  428 (714)
T ss_pred             -H-HHhcCCCEEEEcCc--ccHHHHHHHHHHHHhhCCCCcEEEECC
Confidence             1 24568999997743  456889999999999999999887754

Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Activities include: enoyl-CoA hydratase (EC 4.2.1.17), dodecenoyl-CoA delta-isomerase activity (EC 5.3.3.8), 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadB. This model excludes the FadJ family represented by SP:P77399.

>PLN02178 cinnamyl-alcohol dehydrogenase

Probab=96.66  E-value=0.0091  Score=57.28  Aligned_cols=96  Identities=16%  Similarity=0.154  Sum_probs=64.2

Q ss_pred             CCCCEEEEeccCCChhhHHHHHhhcCCCcEEEEEeCChHH-HHHHHHHHHhcCCCCCCeEEEEccccchhhcCCCcceee
Q 042119          129 VQPKKVAFVGSGPMPLTSIIMAKHHLTSTHFDNFDIDEAA-NDVARSIVASDAEFEGRMKFLTRDIMEVKEQLGEYDCIF  207 (286)
Q Consensus       129 ~~~~~VL~IG~G~lp~tai~lA~~~~~g~~V~~iDid~~a-i~~Ar~~~~~~g~l~~~i~f~~~D~~~~~~~l~~fD~V~  207 (286)
                      .++++|+..|+|++|+.++.+|+.  .|++|+++|.+++. .+.+    +++| ...-+..  .+...+....+.+|+|+
T Consensus       177 ~~g~~VlV~G~G~vG~~avq~Ak~--~Ga~Vi~~~~~~~~~~~~a----~~lG-a~~~i~~--~~~~~v~~~~~~~D~vi  247 (375)
T PLN02178        177 ESGKRLGVNGLGGLGHIAVKIGKA--FGLRVTVISRSSEKEREAI----DRLG-ADSFLVT--TDSQKMKEAVGTMDFII  247 (375)
T ss_pred             CCCCEEEEEcccHHHHHHHHHHHH--cCCeEEEEeCChHHhHHHH----HhCC-CcEEEcC--cCHHHHHHhhCCCcEEE
Confidence            478999999999999999999994  78999999988654 3333    3467 2211111  11112222223689999


Q ss_pred             hhhhccCChhHHHHHHHHHHhhccCCcEEEEee
Q 042119          208 LAALVGMSKEEKLTILGHIRKYMKDGGILLVRS  240 (286)
Q Consensus       208 ~aalvg~~~~~k~~vl~~l~~~l~pgg~lv~r~  240 (286)
                      .+.-.     +  ..+....+.+++||.++.-.
T Consensus       248 d~~G~-----~--~~~~~~~~~l~~~G~iv~vG  273 (375)
T PLN02178        248 DTVSA-----E--HALLPLFSLLKVSGKLVALG  273 (375)
T ss_pred             ECCCc-----H--HHHHHHHHhhcCCCEEEEEc
Confidence            65321     1  35667788899999998764

>PLN02827 Alcohol dehydrogenase-like

Probab=96.66  E-value=0.0068  Score=58.05  Aligned_cols=101  Identities=19%  Similarity=0.189  Sum_probs=67.1

Q ss_pred             cCCCCCCEEEEeccCCChhhHHHHHhhcCCCc-EEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEE--ccccchhhcC--
Q 042119          126 NGVVQPKKVAFVGSGPMPLTSIIMAKHHLTST-HFDNFDIDEAANDVARSIVASDAEFEGRMKFLT--RDIMEVKEQL--  200 (286)
Q Consensus       126 ~~~~~~~~VL~IG~G~lp~tai~lA~~~~~g~-~V~~iDid~~ai~~Ar~~~~~~g~l~~~i~f~~--~D~~~~~~~l--  200 (286)
                      ....++++||..|+|++|+.++.+|+.  .|+ .|+++|.+++..+.|++    +| ...-+....  .+..+....+  
T Consensus       189 ~~~~~g~~VlV~G~G~vG~~~iqlak~--~G~~~vi~~~~~~~~~~~a~~----lG-a~~~i~~~~~~~~~~~~v~~~~~  261 (378)
T PLN02827        189 ADVSKGSSVVIFGLGTVGLSVAQGAKL--RGASQIIGVDINPEKAEKAKT----FG-VTDFINPNDLSEPIQQVIKRMTG  261 (378)
T ss_pred             cCCCCCCEEEEECCCHHHHHHHHHHHH--cCCCeEEEECCCHHHHHHHHH----cC-CcEEEcccccchHHHHHHHHHhC
Confidence            345789999999999999999999994  677 59999999998877755    56 221122211  1221111111  


Q ss_pred             CCcceeehhhhccCChhHHHHHHHHHHhhccCC-cEEEEee
Q 042119          201 GEYDCIFLAALVGMSKEEKLTILGHIRKYMKDG-GILLVRS  240 (286)
Q Consensus       201 ~~fD~V~~aalvg~~~~~k~~vl~~l~~~l~pg-g~lv~r~  240 (286)
                      +++|+|+-+.-.     .  ..+....+.+++| |++++-.
T Consensus       262 ~g~d~vid~~G~-----~--~~~~~~l~~l~~g~G~iv~~G  295 (378)
T PLN02827        262 GGADYSFECVGD-----T--GIATTALQSCSDGWGLTVTLG  295 (378)
T ss_pred             CCCCEEEECCCC-----h--HHHHHHHHhhccCCCEEEEEC
Confidence            269999865421     1  2456677788998 9998754

>PLN02514 cinnamyl-alcohol dehydrogenase

Probab=96.65  E-value=0.014  Score=55.22  Aligned_cols=97  Identities=15%  Similarity=0.166  Sum_probs=65.1

Q ss_pred             CCCCEEEEeccCCChhhHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEccccchhhcCCCcceeeh
Q 042119          129 VQPKKVAFVGSGPMPLTSIIMAKHHLTSTHFDNFDIDEAANDVARSIVASDAEFEGRMKFLTRDIMEVKEQLGEYDCIFL  208 (286)
Q Consensus       129 ~~~~~VL~IG~G~lp~tai~lA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~g~l~~~i~f~~~D~~~~~~~l~~fD~V~~  208 (286)
                      .++++|+..|+|++|..++.+|++  .|++|+.++.+++..+.+.   +++| . +. .+...+...+......+|+||.
T Consensus       179 ~~g~~vlV~G~G~vG~~av~~Ak~--~G~~vi~~~~~~~~~~~~~---~~~G-a-~~-~i~~~~~~~~~~~~~~~D~vid  250 (357)
T PLN02514        179 QSGLRGGILGLGGVGHMGVKIAKA--MGHHVTVISSSDKKREEAL---EHLG-A-DD-YLVSSDAAEMQEAADSLDYIID  250 (357)
T ss_pred             CCCCeEEEEcccHHHHHHHHHHHH--CCCeEEEEeCCHHHHHHHH---HhcC-C-cE-EecCCChHHHHHhcCCCcEEEE
Confidence            578999999999999999999994  6889999999887654443   3366 2 21 1111121112222236899986


Q ss_pred             hhhccCChhHHHHHHHHHHhhccCCcEEEEee
Q 042119          209 AALVGMSKEEKLTILGHIRKYMKDGGILLVRS  240 (286)
Q Consensus       209 aalvg~~~~~k~~vl~~l~~~l~pgg~lv~r~  240 (286)
                      +.  |.     ...+....+.+++||+++.-.
T Consensus       251 ~~--g~-----~~~~~~~~~~l~~~G~iv~~G  275 (357)
T PLN02514        251 TV--PV-----FHPLEPYLSLLKLDGKLILMG  275 (357)
T ss_pred             CC--Cc-----hHHHHHHHHHhccCCEEEEEC
Confidence            53  21     135666778899999998865

>cd08300 alcohol_DH_class_III class III alcohol dehydrogenases

Probab=96.62  E-value=0.0082  Score=56.98  Aligned_cols=101  Identities=20%  Similarity=0.229  Sum_probs=67.9

Q ss_pred             cCCCCCCEEEEeccCCChhhHHHHHhhcCCCc-EEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEc--cccchhhcC--
Q 042119          126 NGVVQPKKVAFVGSGPMPLTSIIMAKHHLTST-HFDNFDIDEAANDVARSIVASDAEFEGRMKFLTR--DIMEVKEQL--  200 (286)
Q Consensus       126 ~~~~~~~~VL~IG~G~lp~tai~lA~~~~~g~-~V~~iDid~~ai~~Ar~~~~~~g~l~~~i~f~~~--D~~~~~~~l--  200 (286)
                      ...+++++||..|+|++|..++.+|+.  .|+ +|+++|.+++..+.+++    +| ...-+.....  |..+....+  
T Consensus       182 ~~~~~g~~VlV~G~G~vG~~a~~~ak~--~G~~~vi~~~~~~~~~~~~~~----lG-a~~~i~~~~~~~~~~~~v~~~~~  254 (368)
T cd08300         182 AKVEPGSTVAVFGLGAVGLAVIQGAKA--AGASRIIGIDINPDKFELAKK----FG-ATDCVNPKDHDKPIQQVLVEMTD  254 (368)
T ss_pred             cCCCCCCEEEEECCCHHHHHHHHHHHH--cCCCeEEEEeCCHHHHHHHHH----cC-CCEEEcccccchHHHHHHHHHhC
Confidence            456789999999999999999999994  688 79999999998887765    56 2211222111  111111111  


Q ss_pred             CCcceeehhhhccCChhHHHHHHHHHHhhccCC-cEEEEee
Q 042119          201 GEYDCIFLAALVGMSKEEKLTILGHIRKYMKDG-GILLVRS  240 (286)
Q Consensus       201 ~~fD~V~~aalvg~~~~~k~~vl~~l~~~l~pg-g~lv~r~  240 (286)
                      +++|+|+.+.  |.     ...+....+.++++ |+++.-.
T Consensus       255 ~g~d~vid~~--g~-----~~~~~~a~~~l~~~~G~~v~~g  288 (368)
T cd08300         255 GGVDYTFECI--GN-----VKVMRAALEACHKGWGTSVIIG  288 (368)
T ss_pred             CCCcEEEECC--CC-----hHHHHHHHHhhccCCCeEEEEc
Confidence            2699998653  21     13566777888887 8888754

Members identified as glutathione-dependent formaldehyde dehydrogenase(FDH), a member of the zinc dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes or ketones. Like many zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these FDHs form dimers, with 4 zinc ions per dimer. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dim

>PF01269 Fibrillarin: Fibrillarin; InterPro: IPR000692 Fibrillarin is a component of a nucleolar small nuclear ribonucleoprotein (SnRNP), functioning in vivo in ribosomal RNA processing [, ]

Probab=96.61  E-value=0.029  Score=50.50  Aligned_cols=118  Identities=14%  Similarity=0.124  Sum_probs=75.8

Q ss_pred             hhhhHHHHHHHHhcCCCCCCEEEEeccCCChhhHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEcc
Q 042119          113 VKLSKLEYTILSENGVVQPKKVAFVGSGPMPLTSIIMAKHHLTSTHFDNFDIDEAANDVARSIVASDAEFEGRMKFLTRD  192 (286)
Q Consensus       113 ~~l~~~E~~~l~~~~~~~~~~VL~IG~G~lp~tai~lA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~g~l~~~i~f~~~D  192 (286)
                      -+|...-+..+....++++++||.+|.. -|.|.-.++.-..+.+.|.+++.+|...+---.++++-    .+|--+-+|
T Consensus        56 SKLaAai~~Gl~~~~ik~gskVLYLGAa-sGTTVSHvSDIvg~~G~VYaVEfs~r~~rdL~~la~~R----~NIiPIl~D  130 (229)
T PF01269_consen   56 SKLAAAILKGLENIPIKPGSKVLYLGAA-SGTTVSHVSDIVGPDGVVYAVEFSPRSMRDLLNLAKKR----PNIIPILED  130 (229)
T ss_dssp             -HHHHHHHTT-S--S--TT-EEEEETTT-TSHHHHHHHHHHTTTSEEEEEESSHHHHHHHHHHHHHS----TTEEEEES-
T ss_pred             hHHHHHHHcCccccCCCCCCEEEEeccc-CCCccchhhhccCCCCcEEEEEecchhHHHHHHHhccC----Cceeeeecc
Confidence            3444444444444567899999999997 48888888775557899999999997755555555543    478888899


Q ss_pred             ccchhhcC----CCcceeehhhhccCChhHHHHHHHHHHhhccCCcEEEEe
Q 042119          193 IMEVKEQL----GEYDCIFLAALVGMSKEEKLTILGHIRKYMKDGGILLVR  239 (286)
Q Consensus       193 ~~~~~~~l----~~fD~V~~aalvg~~~~~k~~vl~~l~~~l~pgg~lv~r  239 (286)
                      +.. |...    ...|+||.+..-   +.+-.-+..+....||+||.+++.
T Consensus       131 Ar~-P~~Y~~lv~~VDvI~~DVaQ---p~Qa~I~~~Na~~fLk~gG~~~i~  177 (229)
T PF01269_consen  131 ARH-PEKYRMLVEMVDVIFQDVAQ---PDQARIAALNARHFLKPGGHLIIS  177 (229)
T ss_dssp             TTS-GGGGTTTS--EEEEEEE-SS---TTHHHHHHHHHHHHEEEEEEEEEE
T ss_pred             CCC-hHHhhcccccccEEEecCCC---hHHHHHHHHHHHhhccCCcEEEEE
Confidence            875 3322    468999976432   133344666777899999988775

It is associated with U3, U8 and U13 small nuclear RNAs in mammals [] and is similar to the yeast NOP1 protein []. Fibrillarin has a well conserved sequence of around 320 amino acids, and contains 3 domains, an N-terminal Gly/Arg-rich region; a central domain resembling other RNA-binding proteins and containing an RNP-2-like consensus sequence; and a C-terminal alpha-helical domain. An evolutionarily related pre-rRNA processing protein, which lacks the Gly/Arg-rich domain, has been found in various archaebacteria.; GO: 0003723 RNA binding, 0008168 methyltransferase activity, 0006364 rRNA processing, 0008033 tRNA processing; PDB: 3PLA_E 3ID6_C 3ID5_B 1NT2_A 3NVK_J 2NNW_B 3NVM_B 3NMU_J 1PRY_A 1G8A_A ....

>KOG3201 consensus Uncharacterized conserved protein [Function unknown]

Probab=96.60  E-value=0.0014  Score=56.21  Aligned_cols=111  Identities=17%  Similarity=0.193  Sum_probs=77.2

Q ss_pred             CCCCEEEEeccCCChhhHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCC--CCeEEEEcccc-chhhcC-CCcc
Q 042119          129 VQPKKVAFVGSGPMPLTSIIMAKHHLTSTHFDNFDIDEAANDVARSIVASDAEFE--GRMKFLTRDIM-EVKEQL-GEYD  204 (286)
Q Consensus       129 ~~~~~VL~IG~G~lp~tai~lA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~g~l~--~~i~f~~~D~~-~~~~~l-~~fD  204 (286)
                      -.+++|+++|+|-.+++.+++|. ..+...|.--|-++++++--++.....- .+  .+.....-+.. +..... ..||
T Consensus        28 ~rg~~ilelgggft~laglmia~-~a~~~~v~ltdgne~svrnv~ki~~~n~-~s~~tsc~vlrw~~~~aqsq~eq~tFD  105 (201)
T KOG3201|consen   28 IRGRRILELGGGFTGLAGLMIAC-KAPDSSVWLTDGNEESVRNVEKIRNSNM-ASSLTSCCVLRWLIWGAQSQQEQHTFD  105 (201)
T ss_pred             HhHHHHHHhcCchhhhhhhheee-ecCCceEEEecCCHHHHHHHHHHHhccc-ccccceehhhHHHHhhhHHHHhhCccc
Confidence            34689999999999999999998 5788999999999999999888765431 11  22211111111 111122 3699


Q ss_pred             eeehhhhccCChhHHHHHHHHHHhhccCCcEEEEeecC
Q 042119          205 CIFLAALVGMSKEEKLTILGHIRKYMKDGGILLVRSAK  242 (286)
Q Consensus       205 ~V~~aalvg~~~~~k~~vl~~l~~~l~pgg~lv~r~~~  242 (286)
                      +|+.+--+-. .+-...+.+.|+++|+|.|.-++-++.
T Consensus       106 iIlaADClFf-dE~h~sLvdtIk~lL~p~g~Al~fsPR  142 (201)
T KOG3201|consen  106 IILAADCLFF-DEHHESLVDTIKSLLRPSGRALLFSPR  142 (201)
T ss_pred             EEEeccchhH-HHHHHHHHHHHHHHhCcccceeEecCc
Confidence            9875432211 366778999999999999987776653

>cd08277 liver_alcohol_DH_like Liver alcohol dehydrogenase

Probab=96.60  E-value=0.0098  Score=56.41  Aligned_cols=100  Identities=22%  Similarity=0.260  Sum_probs=67.3

Q ss_pred             cCCCCCCEEEEeccCCChhhHHHHHhhcCCCc-EEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEc--cccc-hh--hc
Q 042119          126 NGVVQPKKVAFVGSGPMPLTSIIMAKHHLTST-HFDNFDIDEAANDVARSIVASDAEFEGRMKFLTR--DIME-VK--EQ  199 (286)
Q Consensus       126 ~~~~~~~~VL~IG~G~lp~tai~lA~~~~~g~-~V~~iDid~~ai~~Ar~~~~~~g~l~~~i~f~~~--D~~~-~~--~~  199 (286)
                      ....++++|+..|+|++|..++.+|+.  .|+ +|+++|.+++..+.+++    +| ...-+....-  +..+ +.  ..
T Consensus       180 ~~~~~g~~vlV~G~g~vG~~~~~~a~~--~G~~~Vi~~~~~~~~~~~~~~----~g-a~~~i~~~~~~~~~~~~~~~~~~  252 (365)
T cd08277         180 AKVEPGSTVAVFGLGAVGLSAIMGAKI--AGASRIIGVDINEDKFEKAKE----FG-ATDFINPKDSDKPVSEVIREMTG  252 (365)
T ss_pred             cCCCCCCEEEEECCCHHHHHHHHHHHH--cCCCeEEEEeCCHHHHHHHHH----cC-CCcEeccccccchHHHHHHHHhC
Confidence            346789999999999999999999994  677 79999999998888755    45 2111222111  1111 11  12


Q ss_pred             CCCcceeehhhhccCChhHHHHHHHHHHhhccCC-cEEEEee
Q 042119          200 LGEYDCIFLAALVGMSKEEKLTILGHIRKYMKDG-GILLVRS  240 (286)
Q Consensus       200 l~~fD~V~~aalvg~~~~~k~~vl~~l~~~l~pg-g~lv~r~  240 (286)
                       .++|+|+.+.  |.     ...+....+.+++| |.++.-.
T Consensus       253 -~g~d~vid~~--g~-----~~~~~~~~~~l~~~~G~~v~~g  286 (365)
T cd08277         253 -GGVDYSFECT--GN-----ADLMNEALESTKLGWGVSVVVG  286 (365)
T ss_pred             -CCCCEEEECC--CC-----hHHHHHHHHhcccCCCEEEEEc
Confidence             3699998643  21     13667788889886 8887754

NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. There are 7 vertebrate ADH 7 classes, 6 of which have been identified in humans. Class III, glutathione-dependent formaldehyde dehydrogenase, has been identified as the primordial form and exists in diverse species, including plants, micro-organisms, vertebrates, and invertebrates. Class I, typified by liver dehydrogenase, is an evolving form. Gene duplication and functional specialization of ADH into ADH classes and subclasses created numerous forms in vertebrates. For example, the A, B and C (formerly alpha, beta, gamma) human class I subunits have high overall structural similarity, but differ i

>TIGR02279 PaaC-3OHAcCoADH 3-hydroxyacyl-CoA dehydrogenase PaaC

Probab=96.58  E-value=0.0059  Score=61.22  Aligned_cols=100  Identities=17%  Similarity=0.211  Sum_probs=68.9

Q ss_pred             CCCEEEEeccCCChhhHH-HHHhhcCCCcEEEEEeCChHHHHHHHHHHHh-------cCCC--------CCCeEEEEccc
Q 042119          130 QPKKVAFVGSGPMPLTSI-IMAKHHLTSTHFDNFDIDEAANDVARSIVAS-------DAEF--------EGRMKFLTRDI  193 (286)
Q Consensus       130 ~~~~VL~IG~G~lp~tai-~lA~~~~~g~~V~~iDid~~ai~~Ar~~~~~-------~g~l--------~~~i~f~~~D~  193 (286)
                      +-++|.+||+|.+|..-. .+++   .|..|+.+|+++++++.+++.+++       .|.+        -.++++. .|.
T Consensus         4 ~~~kV~VIGaG~MG~gIA~~la~---aG~~V~l~d~~~e~l~~~~~~i~~~l~~~~~~G~~~~~~~~~~~~~i~~~-~~~   79 (503)
T TIGR02279         4 NVVTVAVIGAGAMGAGIAQVAAS---AGHQVLLYDIRAEALARAIAGIEARLNSLVTKGKLTAEECERTLKRLIPV-TDL   79 (503)
T ss_pred             CccEEEEECcCHHHHHHHHHHHh---CCCeEEEEeCCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHhccEEe-CCH
Confidence            457899999999885533 3344   789999999999999988654331       2211        0234442 232


Q ss_pred             cchhhcCCCcceeehhhhccCChhHHHHHHHHHHhhccCCcEEEEe
Q 042119          194 MEVKEQLGEYDCIFLAALVGMSKEEKLTILGHIRKYMKDGGILLVR  239 (286)
Q Consensus       194 ~~~~~~l~~fD~V~~aalvg~~~~~k~~vl~~l~~~l~pgg~lv~r  239 (286)
                          .++.+.|+|+.+..  -+.+-|..++..+.+.++|+.+|...
T Consensus        80 ----~~l~~aDlVIEav~--E~~~vK~~vf~~l~~~~~~~~Ilasn  119 (503)
T TIGR02279        80 ----HALADAGLVIEAIV--ENLEVKKALFAQLEELCPADTIIASN  119 (503)
T ss_pred             ----HHhCCCCEEEEcCc--CcHHHHHHHHHHHHhhCCCCeEEEEC
Confidence                23457899997642  35578999999999998888776654

This 3-hydroxyacyl-CoA dehydrogenase is involved in the degradation of phenylacetic acid, presumably in steps following the opening of the phenyl ring. The sequences included in this model are all found in aparrent operons with other related genes such as paaA, paaB, paaD, paaE, paaF and paaN. Some genomes contain these other genes without an apparent paaC in the same operon - possibly in these cases a different dehydrogenase involved in fatty acid degradation may fill in the needed activity. This enzyme has domains which are members of the pfam02737 and pfam00725 families.

>PRK08268 3-hydroxy-acyl-CoA dehydrogenase; Validated

Probab=96.55  E-value=0.0052  Score=61.66  Aligned_cols=100  Identities=18%  Similarity=0.259  Sum_probs=70.0

Q ss_pred             CCCEEEEeccCCChhh-HHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHh-------cCCC--------CCCeEEEEccc
Q 042119          130 QPKKVAFVGSGPMPLT-SIIMAKHHLTSTHFDNFDIDEAANDVARSIVAS-------DAEF--------EGRMKFLTRDI  193 (286)
Q Consensus       130 ~~~~VL~IG~G~lp~t-ai~lA~~~~~g~~V~~iDid~~ai~~Ar~~~~~-------~g~l--------~~~i~f~~~D~  193 (286)
                      +-++|.+||.|.+|.. +..+|+   .|..|+.+|+++++++.+.+.+++       .|.+        -.++++. .|.
T Consensus         6 ~i~~V~VIGaG~MG~gIA~~la~---aG~~V~l~D~~~e~l~~~~~~i~~~l~~~~~~G~~~~~~~~~~~~~i~~~-~~~   81 (507)
T PRK08268          6 SIATVAVIGAGAMGAGIAQVAAQ---AGHTVLLYDARAGAAAAARDGIAARLAKLVEKGKLTAEQADAALARLRPV-EAL   81 (507)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHh---CCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEEe-CCH
Confidence            3478999999998854 333444   799999999999999998665542       2210        1235543 232


Q ss_pred             cchhhcCCCcceeehhhhccCChhHHHHHHHHHHhhccCCcEEEEe
Q 042119          194 MEVKEQLGEYDCIFLAALVGMSKEEKLTILGHIRKYMKDGGILLVR  239 (286)
Q Consensus       194 ~~~~~~l~~fD~V~~aalvg~~~~~k~~vl~~l~~~l~pgg~lv~r  239 (286)
                          .++.+.|+|+.+.  .-+.+-|..++.++.+.++|+.++...
T Consensus        82 ----~~~~~aDlViEav--~E~~~vK~~vf~~l~~~~~~~ailasn  121 (507)
T PRK08268         82 ----ADLADCDLVVEAI--VERLDVKQALFAQLEAIVSPDCILATN  121 (507)
T ss_pred             ----HHhCCCCEEEEcC--cccHHHHHHHHHHHHhhCCCCcEEEEC
Confidence                2345789999764  345678999999999988888888643

>cd08238 sorbose_phosphate_red L-sorbose-1-phosphate reductase

Probab=96.55  E-value=0.016  Score=56.13  Aligned_cols=104  Identities=17%  Similarity=0.234  Sum_probs=66.8

Q ss_pred             cCCCCCCEEEEec-cCCChhhHHHHHhhcCCCc-EEEEEeCChHHHHHHHHHHHhc----CCCCCCeEEEE----ccccc
Q 042119          126 NGVVQPKKVAFVG-SGPMPLTSIIMAKHHLTST-HFDNFDIDEAANDVARSIVASD----AEFEGRMKFLT----RDIME  195 (286)
Q Consensus       126 ~~~~~~~~VL~IG-~G~lp~tai~lA~~~~~g~-~V~~iDid~~ai~~Ar~~~~~~----g~l~~~i~f~~----~D~~~  195 (286)
                      ..++++++|+.+| +|++|+.++.+|+....|+ +|+++|.+++..+.|+++....    |   ....++.    .|..+
T Consensus       171 ~~~~~g~~VlV~G~~G~vG~~aiq~ak~~G~g~~~Vi~~~~~~~r~~~a~~~~~~~~~~~G---a~~~~i~~~~~~~~~~  247 (410)
T cd08238         171 MGIKPGGNTAILGGAGPMGLMAIDYAIHGPIGPSLLVVTDVNDERLARAQRLFPPEAASRG---IELLYVNPATIDDLHA  247 (410)
T ss_pred             cCCCCCCEEEEEeCCCHHHHHHHHHHHhcccCCceEEEEcCCHHHHHHHHHhccccccccC---ceEEEECCCccccHHH
Confidence            3457789999998 7999999999998421233 7999999999999998863221    3   1111221    12111


Q ss_pred             hhh---cCCCcceeehhhhccCChhHHHHHHHHHHhhccCCcEEEEe
Q 042119          196 VKE---QLGEYDCIFLAALVGMSKEEKLTILGHIRKYMKDGGILLVR  239 (286)
Q Consensus       196 ~~~---~l~~fD~V~~aalvg~~~~~k~~vl~~l~~~l~pgg~lv~r  239 (286)
                      ...   .-.+||+|+.+.-.       ...+....+.++++|.+++-
T Consensus       248 ~v~~~t~g~g~D~vid~~g~-------~~~~~~a~~~l~~~G~~v~~  287 (410)
T cd08238         248 TLMELTGGQGFDDVFVFVPV-------PELVEEADTLLAPDGCLNFF  287 (410)
T ss_pred             HHHHHhCCCCCCEEEEcCCC-------HHHHHHHHHHhccCCeEEEE
Confidence            111   11369998865321       13667788889988876654

L-sorbose-1-phosphate reductase, a member of the MDR family, catalyzes the NADPH-dependent conversion of l-sorbose 1-phosphate to d-glucitol 6-phosphate in the metabolism of L-sorbose to (also converts d-fructose 1-phosphate to d-mannitol 6-phosphate). The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of an beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the found

>cd08285 NADP_ADH NADP(H)-dependent alcohol dehydrogenases

Probab=96.54  E-value=0.01  Score=55.57  Aligned_cols=102  Identities=16%  Similarity=0.203  Sum_probs=69.4

Q ss_pred             hcCCCCCCEEEEeccCCChhhHHHHHhhcCCCc-EEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEccccc-hhhcC--
Q 042119          125 ENGVVQPKKVAFVGSGPMPLTSIIMAKHHLTST-HFDNFDIDEAANDVARSIVASDAEFEGRMKFLTRDIME-VKEQL--  200 (286)
Q Consensus       125 ~~~~~~~~~VL~IG~G~lp~tai~lA~~~~~g~-~V~~iDid~~ai~~Ar~~~~~~g~l~~~i~f~~~D~~~-~~~~l--  200 (286)
                      .....++++||..|+|++|..++.+|+.  .|+ .|+++|.+++..+.+++    +| ...-+.....+..+ +....  
T Consensus       161 ~~~~~~g~~vlI~g~g~iG~~~~~lak~--~G~~~v~~~~~~~~~~~~~~~----~g-~~~~v~~~~~~~~~~i~~~~~~  233 (351)
T cd08285         161 LANIKLGDTVAVFGIGPVGLMAVAGARL--RGAGRIIAVGSRPNRVELAKE----YG-ATDIVDYKNGDVVEQILKLTGG  233 (351)
T ss_pred             ccCCCCCCEEEEECCCHHHHHHHHHHHH--cCCCeEEEEeCCHHHHHHHHH----cC-CceEecCCCCCHHHHHHHHhCC
Confidence            4456788999999999999999999994  577 59999999988877765    56 22222222222111 11111  


Q ss_pred             CCcceeehhhhccCChhHHHHHHHHHHhhccCCcEEEEee
Q 042119          201 GEYDCIFLAALVGMSKEEKLTILGHIRKYMKDGGILLVRS  240 (286)
Q Consensus       201 ~~fD~V~~aalvg~~~~~k~~vl~~l~~~l~pgg~lv~r~  240 (286)
                      ..+|+++.+..      . ...+....+.|+++|+++.-.
T Consensus       234 ~~~d~vld~~g------~-~~~~~~~~~~l~~~G~~v~~g  266 (351)
T cd08285         234 KGVDAVIIAGG------G-QDTFEQALKVLKPGGTISNVN  266 (351)
T ss_pred             CCCcEEEECCC------C-HHHHHHHHHHhhcCCEEEEec
Confidence            35999885432      1 146778899999999998654

This group is predominated by atypical alcohol dehydrogenases; they exist as tetramers and exhibit specificity for NADP(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like other zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), tetrameric ADHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains; however, they do not have and a structural zinc in a lobe of the catalytic domain. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit.

>PRK15182 Vi polysaccharide biosynthesis protein TviB; Provisional

Probab=96.52  E-value=0.026  Score=55.49  Aligned_cols=100  Identities=17%  Similarity=0.238  Sum_probs=64.2

Q ss_pred             CCCCEEEEeccCCChhhHHHHHhhcCCCcEEEEEeCChHHHHHHHHHH-----------HhcCCCCCCeEEEEccccchh
Q 042119          129 VQPKKVAFVGSGPMPLTSIIMAKHHLTSTHFDNFDIDEAANDVARSIV-----------ASDAEFEGRMKFLTRDIMEVK  197 (286)
Q Consensus       129 ~~~~~VL~IG~G~lp~tai~lA~~~~~g~~V~~iDid~~ai~~Ar~~~-----------~~~g~l~~~i~f~~~D~~~~~  197 (286)
                      .++.+|.+||.|-+|+.......   .+.+|+++|+|++.++.-++-.           ...|    +..+. .+.    
T Consensus         4 ~~~mkI~vIGlGyvGlpmA~~la---~~~~V~g~D~~~~~ve~l~~G~~~~~e~~~~~l~~~g----~l~~t-~~~----   71 (425)
T PRK15182          4 IDEVKIAIIGLGYVGLPLAVEFG---KSRQVVGFDVNKKRILELKNGVDVNLETTEEELREAR----YLKFT-SEI----   71 (425)
T ss_pred             CCCCeEEEECcCcchHHHHHHHh---cCCEEEEEeCCHHHHHHHHCcCCCCCCCCHHHHHhhC----CeeEE-eCH----
Confidence            35689999999999886554433   4689999999999988765110           0111    22232 222    


Q ss_pred             hcCCCcceeehhhhcc------CChhHHHHHHHHHHhhccCCcEEEEee
Q 042119          198 EQLGEYDCIFLAALVG------MSKEEKLTILGHIRKYMKDGGILLVRS  240 (286)
Q Consensus       198 ~~l~~fD~V~~aalvg------~~~~~k~~vl~~l~~~l~pgg~lv~r~  240 (286)
                      ......|++|++---.      .+.+.=....+.+.+.+++|.+++.++
T Consensus        72 ~~~~~advvii~Vptp~~~~~~~dl~~v~~a~~~i~~~l~~g~lVI~~S  120 (425)
T PRK15182         72 EKIKECNFYIITVPTPINTYKQPDLTPLIKASETVGTVLNRGDIVVYES  120 (425)
T ss_pred             HHHcCCCEEEEEcCCCCCCCCCcchHHHHHHHHHHHHhcCCCCEEEEec
Confidence            1235789999774321      111233344568889999999999987

>cd08233 butanediol_DH_like (2R,3R)-2,3-butanediol dehydrogenase

Probab=96.52  E-value=0.012  Score=55.13  Aligned_cols=102  Identities=18%  Similarity=0.187  Sum_probs=69.8

Q ss_pred             hcCCCCCCEEEEeccCCChhhHHHHHhhcCCCc-EEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEccccchh-hcC--
Q 042119          125 ENGVVQPKKVAFVGSGPMPLTSIIMAKHHLTST-HFDNFDIDEAANDVARSIVASDAEFEGRMKFLTRDIMEVK-EQL--  200 (286)
Q Consensus       125 ~~~~~~~~~VL~IG~G~lp~tai~lA~~~~~g~-~V~~iDid~~ai~~Ar~~~~~~g~l~~~i~f~~~D~~~~~-~~l--  200 (286)
                      .....++.+|+..|+|++|..++.+|++  .|+ +|++++.+++..+.+++    +| ...-+.....|..+.. ...  
T Consensus       167 ~~~~~~g~~vlI~g~g~vG~~a~q~a~~--~G~~~v~~~~~~~~~~~~~~~----~g-a~~~i~~~~~~~~~~l~~~~~~  239 (351)
T cd08233         167 RSGFKPGDTALVLGAGPIGLLTILALKA--AGASKIIVSEPSEARRELAEE----LG-ATIVLDPTEVDVVAEVRKLTGG  239 (351)
T ss_pred             hcCCCCCCEEEEECCCHHHHHHHHHHHH--cCCCEEEEECCCHHHHHHHHH----hC-CCEEECCCccCHHHHHHHHhCC
Confidence            3456788999999999999999999994  688 89999999998887765    35 2221222222221111 111  


Q ss_pred             CCcceeehhhhccCChhHHHHHHHHHHhhccCCcEEEEee
Q 042119          201 GEYDCIFLAALVGMSKEEKLTILGHIRKYMKDGGILLVRS  240 (286)
Q Consensus       201 ~~fD~V~~aalvg~~~~~k~~vl~~l~~~l~pgg~lv~r~  240 (286)
                      .++|+|+.+..-     .  ..++...+.|++||.++.-.
T Consensus       240 ~~~d~vid~~g~-----~--~~~~~~~~~l~~~G~~v~~g  272 (351)
T cd08233         240 GGVDVSFDCAGV-----Q--ATLDTAIDALRPRGTAVNVA  272 (351)
T ss_pred             CCCCEEEECCCC-----H--HHHHHHHHhccCCCEEEEEc
Confidence            249999865321     1  35678888999999998754

(2R,3R)-2,3-butanediol dehydrogenase, a zinc-dependent medium chain alcohol dehydrogenase, catalyzes the NAD(+)-dependent oxidation of (2R,3R)-2,3-butanediol and meso-butanediol to acetoin. BDH functions as a homodimer. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit.

>TIGR02819 fdhA_non_GSH formaldehyde dehydrogenase, glutathione-independent

Probab=96.52  E-value=0.013  Score=56.60  Aligned_cols=109  Identities=21%  Similarity=0.227  Sum_probs=70.8

Q ss_pred             HhcCCCCCCEEEEeccCCChhhHHHHHhhcCCCcE-EEEEeCChHHHHHHHHHHHhcCCCCCCeEEEE-ccccc-hhh--
Q 042119          124 SENGVVQPKKVAFVGSGPMPLTSIIMAKHHLTSTH-FDNFDIDEAANDVARSIVASDAEFEGRMKFLT-RDIME-VKE--  198 (286)
Q Consensus       124 ~~~~~~~~~~VL~IG~G~lp~tai~lA~~~~~g~~-V~~iDid~~ai~~Ar~~~~~~g~l~~~i~f~~-~D~~~-~~~--  198 (286)
                      .+....++++||..|+|++|+.++.+|+.  .|++ |+..|.+++..+.|++    +| . +.+.... .+..+ +..  
T Consensus       179 ~~~~~~~g~~VlV~G~G~iG~~aiqlAk~--~Ga~~vi~~d~~~~r~~~a~~----~G-a-~~v~~~~~~~~~~~v~~~~  250 (393)
T TIGR02819       179 VTAGVGPGSTVYIAGAGPVGLAAAASAQL--LGAAVVIVGDLNPARLAQARS----FG-C-ETVDLSKDATLPEQIEQIL  250 (393)
T ss_pred             HhcCCCCCCEEEEECCCHHHHHHHHHHHH--cCCceEEEeCCCHHHHHHHHH----cC-C-eEEecCCcccHHHHHHHHc
Confidence            34456789999999999999999999994  6776 5667899888888876    46 2 2121111 12211 111  


Q ss_pred             cCCCcceeehhhhccC-------ChhHHHHHHHHHHhhccCCcEEEEee
Q 042119          199 QLGEYDCIFLAALVGM-------SKEEKLTILGHIRKYMKDGGILLVRS  240 (286)
Q Consensus       199 ~l~~fD~V~~aalvg~-------~~~~k~~vl~~l~~~l~pgg~lv~r~  240 (286)
                      .-..+|+|+.+.-...       ...+....+++..+.+++||++++-.
T Consensus       251 ~~~g~Dvvid~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~i~~~G  299 (393)
T TIGR02819       251 GEPEVDCAVDCVGFEARGHGHDGKKEAPATVLNSLMEVTRVGGAIGIPG  299 (393)
T ss_pred             CCCCCcEEEECCCCccccccccccccchHHHHHHHHHHhhCCCEEEEee
Confidence            1135999986543200       01122357888889999999999865

Members of this family represent a distinct clade within the larger family of zinc-dependent dehydrogenases of medium chain alcohols, a family that also includes the so-called glutathione-dependent formaldehyde dehydrogenase. Members of this protein family have a tightly bound NAD that can act as a true cofactor, rather than a cosubstrate in dehydrogenase reactions, in dismutase reactions for some aldehydes. The name given to this family, however, is formaldehyde dehydrogenase, glutathione-independent.

>KOG1331 consensus Predicted methyltransferase [General function prediction only]

Probab=96.51  E-value=0.0049  Score=57.16  Aligned_cols=96  Identities=15%  Similarity=0.109  Sum_probs=73.2

Q ss_pred             CCCCEEEEeccCCChhhHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEccccchhhcCCCcceeeh
Q 042119          129 VQPKKVAFVGSGPMPLTSIIMAKHHLTSTHFDNFDIDEAANDVARSIVASDAEFEGRMKFLTRDIMEVKEQLGEYDCIFL  208 (286)
Q Consensus       129 ~~~~~VL~IG~G~lp~tai~lA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~g~l~~~i~f~~~D~~~~~~~l~~fD~V~~  208 (286)
                      ..+.-++++|||-+-++.    .  .|...++|.|++..-+.-|++-    |    ......+|+..++.....||..+.
T Consensus        44 ~~gsv~~d~gCGngky~~----~--~p~~~~ig~D~c~~l~~~ak~~----~----~~~~~~ad~l~~p~~~~s~d~~ls  109 (293)
T KOG1331|consen   44 PTGSVGLDVGCGNGKYLG----V--NPLCLIIGCDLCTGLLGGAKRS----G----GDNVCRADALKLPFREESFDAALS  109 (293)
T ss_pred             CCcceeeecccCCcccCc----C--CCcceeeecchhhhhccccccC----C----CceeehhhhhcCCCCCCccccchh
Confidence            348999999999754332    1  3788999999998887776652    3    115677999998887778998876


Q ss_pred             hhhccC--ChhHHHHHHHHHHhhccCCcEEEE
Q 042119          209 AALVGM--SKEEKLTILGHIRKYMKDGGILLV  238 (286)
Q Consensus       209 aalvg~--~~~~k~~vl~~l~~~l~pgg~lv~  238 (286)
                      -+.+++  +...+.++++++.+.++|||..++
T Consensus       110 iavihhlsT~~RR~~~l~e~~r~lrpgg~~lv  141 (293)
T KOG1331|consen  110 IAVIHHLSTRERRERALEELLRVLRPGGNALV  141 (293)
T ss_pred             hhhhhhhhhHHHHHHHHHHHHHHhcCCCceEE
Confidence            655522  557788999999999999997555

>PRK07417 arogenate dehydrogenase; Reviewed

Probab=96.50  E-value=0.015  Score=53.62  Aligned_cols=89  Identities=15%  Similarity=0.104  Sum_probs=59.2

Q ss_pred             CEEEEeccCCChhhHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEccccchhhcCCCcceeehhhh
Q 042119          132 KKVAFVGSGPMPLTSIIMAKHHLTSTHFDNFDIDEAANDVARSIVASDAEFEGRMKFLTRDIMEVKEQLGEYDCIFLAAL  211 (286)
Q Consensus       132 ~~VL~IG~G~lp~tai~lA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~g~l~~~i~f~~~D~~~~~~~l~~fD~V~~aal  211 (286)
                      ++|.+||+|.+|.+.....+  ..|.+|+++|.+++..+.+.+    .| .   +.....+.    ....+.|+|+++.-
T Consensus         1 m~I~IIG~G~mG~sla~~L~--~~g~~V~~~d~~~~~~~~a~~----~g-~---~~~~~~~~----~~~~~aDlVilavp   66 (279)
T PRK07417          1 MKIGIVGLGLIGGSLGLDLR--SLGHTVYGVSRRESTCERAIE----RG-L---VDEASTDL----SLLKDCDLVILALP   66 (279)
T ss_pred             CeEEEEeecHHHHHHHHHHH--HCCCEEEEEECCHHHHHHHHH----CC-C---cccccCCH----hHhcCCCEEEEcCC
Confidence            37999999988865433322  257899999999998877654    35 1   11111221    22457899998854


Q ss_pred             ccCChhHHHHHHHHHHhhccCCcEEEE
Q 042119          212 VGMSKEEKLTILGHIRKYMKDGGILLV  238 (286)
Q Consensus       212 vg~~~~~k~~vl~~l~~~l~pgg~lv~  238 (286)
                      .    ..-.++++++.+.++|+.++..
T Consensus        67 ~----~~~~~~~~~l~~~l~~~~ii~d   89 (279)
T PRK07417         67 I----GLLLPPSEQLIPALPPEAIVTD   89 (279)
T ss_pred             H----HHHHHHHHHHHHhCCCCcEEEe
Confidence            3    3445678889888888866643

>cd08301 alcohol_DH_plants Plant alcohol dehydrogenase

Probab=96.47  E-value=0.015  Score=55.16  Aligned_cols=101  Identities=18%  Similarity=0.202  Sum_probs=66.9

Q ss_pred             cCCCCCCEEEEeccCCChhhHHHHHhhcCCCc-EEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEc--cccchhhc--C
Q 042119          126 NGVVQPKKVAFVGSGPMPLTSIIMAKHHLTST-HFDNFDIDEAANDVARSIVASDAEFEGRMKFLTR--DIMEVKEQ--L  200 (286)
Q Consensus       126 ~~~~~~~~VL~IG~G~lp~tai~lA~~~~~g~-~V~~iDid~~ai~~Ar~~~~~~g~l~~~i~f~~~--D~~~~~~~--l  200 (286)
                      ....++++||..|+|++|..++.+|+.  .|+ +|+++|.+++..+.+++    +| ...-+.....  +..+....  -
T Consensus       183 ~~~~~g~~VlV~G~g~vG~~a~q~ak~--~G~~~vi~~~~~~~~~~~~~~----~G-a~~~i~~~~~~~~~~~~v~~~~~  255 (369)
T cd08301         183 AKVKKGSTVAIFGLGAVGLAVAEGARI--RGASRIIGVDLNPSKFEQAKK----FG-VTEFVNPKDHDKPVQEVIAEMTG  255 (369)
T ss_pred             cCCCCCCEEEEECCCHHHHHHHHHHHH--cCCCeEEEEcCCHHHHHHHHH----cC-CceEEcccccchhHHHHHHHHhC
Confidence            356789999999999999999999994  677 89999999998887755    56 2211222110  11111111  1


Q ss_pred             CCcceeehhhhccCChhHHHHHHHHHHhhccCC-cEEEEee
Q 042119          201 GEYDCIFLAALVGMSKEEKLTILGHIRKYMKDG-GILLVRS  240 (286)
Q Consensus       201 ~~fD~V~~aalvg~~~~~k~~vl~~l~~~l~pg-g~lv~r~  240 (286)
                      +.+|+|+-+.  |.     ...+....+.+++| |++++-.
T Consensus       256 ~~~d~vid~~--G~-----~~~~~~~~~~~~~~~g~~v~~g  289 (369)
T cd08301         256 GGVDYSFECT--GN-----IDAMISAFECVHDGWGVTVLLG  289 (369)
T ss_pred             CCCCEEEECC--CC-----hHHHHHHHHHhhcCCCEEEEEC
Confidence            2689988653  21     13556677788996 8888765

NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. There are 7 vertebrate ADH 7 classes, 6 of which have been identified in humans. Class III, glutathione-dependent formaldehyde dehydrogenase, has been identified as the primordial form and exists in diverse species, including plants, micro-organisms, vertebrates, and invertebrates. Class I, typified by liver dehydrogenase, is an evolving form. Gene duplication and functional specialization of ADH into ADH classes and subclasses created numerous forms in vertebrates. For example, the A, B and C (formerly alpha, beta, gamma) human class I subunits have high overall structural similarity, but differ in the

>PRK15057 UDP-glucose 6-dehydrogenase; Provisional

Probab=96.44  E-value=0.025  Score=54.87  Aligned_cols=98  Identities=13%  Similarity=0.209  Sum_probs=61.9

Q ss_pred             CEEEEeccCCChhhHHHHHhhcCCCcEEEEEeCChHHHHHHHHH------------HHhcCCCCCCeEEEEccccchhhc
Q 042119          132 KKVAFVGSGPMPLTSIIMAKHHLTSTHFDNFDIDEAANDVARSI------------VASDAEFEGRMKFLTRDIMEVKEQ  199 (286)
Q Consensus       132 ~~VL~IG~G~lp~tai~lA~~~~~g~~V~~iDid~~ai~~Ar~~------------~~~~g~l~~~i~f~~~D~~~~~~~  199 (286)
                      ++|.+||.|-+|+....+..   .|.+|+++|+|++.++..++-            +.+.+   .+.++. .|..   ..
T Consensus         1 mkI~VIGlGyvGl~~A~~lA---~G~~VigvD~d~~kv~~l~~g~~~~~e~~l~~~l~~~~---~~l~~t-~~~~---~~   70 (388)
T PRK15057          1 MKITISGTGYVGLSNGLLIA---QNHEVVALDILPSRVAMLNDRISPIVDKEIQQFLQSDK---IHFNAT-LDKN---EA   70 (388)
T ss_pred             CEEEEECCCHHHHHHHHHHH---hCCcEEEEECCHHHHHHHHcCCCCCCCcCHHHHHHhCC---CcEEEe-cchh---hh
Confidence            37999999998876655443   378999999999999988762            11111   122221 1111   12


Q ss_pred             CCCcceeehhhhccC-------ChhHHHHHHHHHHhhccCCcEEEEee
Q 042119          200 LGEYDCIFLAALVGM-------SKEEKLTILGHIRKYMKDGGILLVRS  240 (286)
Q Consensus       200 l~~fD~V~~aalvg~-------~~~~k~~vl~~l~~~l~pgg~lv~r~  240 (286)
                      ..+.|+|+++.--..       +...-..+++.+.+ ++||.+++.++
T Consensus        71 ~~~ad~vii~Vpt~~~~k~~~~dl~~v~~v~~~i~~-~~~g~lVV~~S  117 (388)
T PRK15057         71 YRDADYVIIATPTDYDPKTNYFNTSSVESVIKDVVE-INPYAVMVIKS  117 (388)
T ss_pred             hcCCCEEEEeCCCCCccCCCCcChHHHHHHHHHHHh-cCCCCEEEEee
Confidence            246799987743111       11233456778887 68998888876

>PRK06129 3-hydroxyacyl-CoA dehydrogenase; Validated

Probab=96.41  E-value=0.034  Score=51.92  Aligned_cols=100  Identities=18%  Similarity=0.262  Sum_probs=63.2

Q ss_pred             CEEEEeccCCChhhHH-HHHhhcCCCcEEEEEeCChHHHHHHHHHHH-------hcCCCC--------CCeEEEEccccc
Q 042119          132 KKVAFVGSGPMPLTSI-IMAKHHLTSTHFDNFDIDEAANDVARSIVA-------SDAEFE--------GRMKFLTRDIME  195 (286)
Q Consensus       132 ~~VL~IG~G~lp~tai-~lA~~~~~g~~V~~iDid~~ai~~Ar~~~~-------~~g~l~--------~~i~f~~~D~~~  195 (286)
                      ++|.+||+|.+|.+.. .+++   .|.+|+.+|++++..+.+++.++       ..|.+.        .++++. .|.  
T Consensus         3 ~~V~VIG~G~mG~~iA~~la~---~G~~V~v~d~~~~~~~~~~~~~~~~l~~l~~~g~~~~~~~~~~~~~i~~~-~~~--   76 (308)
T PRK06129          3 GSVAIIGAGLIGRAWAIVFAR---AGHEVRLWDADPAAAAAAPAYIAGRLEDLAAFDLLDGEAPDAVLARIRVT-DSL--   76 (308)
T ss_pred             cEEEEECccHHHHHHHHHHHH---CCCeeEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCchhhHHHHhcCeEEE-CcH--
Confidence            4799999998886533 3444   68899999999999888765322       233110        123332 332  


Q ss_pred             hhhcCCCcceeehhhhccCChhHHHHHHHHHHhhccCCcEEEEeec
Q 042119          196 VKEQLGEYDCIFLAALVGMSKEEKLTILGHIRKYMKDGGILLVRSA  241 (286)
Q Consensus       196 ~~~~l~~fD~V~~aalvg~~~~~k~~vl~~l~~~l~pgg~lv~r~~  241 (286)
                       .....+.|+|+.+..-  +.+-|..++..+.+..+++ .++..+.
T Consensus        77 -~~a~~~ad~Vi~avpe--~~~~k~~~~~~l~~~~~~~-~ii~sst  118 (308)
T PRK06129         77 -ADAVADADYVQESAPE--NLELKRALFAELDALAPPH-AILASST  118 (308)
T ss_pred             -HHhhCCCCEEEECCcC--CHHHHHHHHHHHHHhCCCc-ceEEEeC
Confidence             2234578999977432  2346888888887775554 4555443

>PF02254 TrkA_N: TrkA-N domain; InterPro: IPR003148 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus

Probab=96.40  E-value=0.037  Score=43.52  Aligned_cols=93  Identities=12%  Similarity=0.160  Sum_probs=61.1

Q ss_pred             EEEeccCCChhhHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEccccchhh----cCCCcceeehh
Q 042119          134 VAFVGSGPMPLTSIIMAKHHLTSTHFDNFDIDEAANDVARSIVASDAEFEGRMKFLTRDIMEVKE----QLGEYDCIFLA  209 (286)
Q Consensus       134 VL~IG~G~lp~tai~lA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~g~l~~~i~f~~~D~~~~~~----~l~~fD~V~~a  209 (286)
                      |+.+|+|.+|......-+  ..+..|+.+|.|++.++.+++    .|     +.++.||..+...    .+.++|.|+..
T Consensus         1 vvI~G~g~~~~~i~~~L~--~~~~~vvvid~d~~~~~~~~~----~~-----~~~i~gd~~~~~~l~~a~i~~a~~vv~~   69 (116)
T PF02254_consen    1 VVIIGYGRIGREIAEQLK--EGGIDVVVIDRDPERVEELRE----EG-----VEVIYGDATDPEVLERAGIEKADAVVIL   69 (116)
T ss_dssp             EEEES-SHHHHHHHHHHH--HTTSEEEEEESSHHHHHHHHH----TT-----SEEEES-TTSHHHHHHTTGGCESEEEEE
T ss_pred             eEEEcCCHHHHHHHHHHH--hCCCEEEEEECCcHHHHHHHh----cc-----cccccccchhhhHHhhcCccccCEEEEc
Confidence            678999977665544444  144599999999999777765    33     5799999986432    33468877755


Q ss_pred             hhccCChhHHHHHHHHHHhhccCCcEEEEeec
Q 042119          210 ALVGMSKEEKLTILGHIRKYMKDGGILLVRSA  241 (286)
Q Consensus       210 alvg~~~~~k~~vl~~l~~~l~pgg~lv~r~~  241 (286)
                      .-   + ....-.+....+.+.|...++++..
T Consensus        70 ~~---~-d~~n~~~~~~~r~~~~~~~ii~~~~   97 (116)
T PF02254_consen   70 TD---D-DEENLLIALLARELNPDIRIIARVN   97 (116)
T ss_dssp             SS---S-HHHHHHHHHHHHHHTTTSEEEEEES
T ss_pred             cC---C-HHHHHHHHHHHHHHCCCCeEEEEEC
Confidence            32   1 2333345556677789999998863

The domain is prevalent among prokaryotic K+ channels, and also found in eukaryotic, high-conductance Ca2+-activated K+ channels (BK channels) [, , ]. Largely involved in redox-linked regulation of potassium channels, the N-terminal part of the RCK domain is predicted to be an active dehydrogenase at least in some cases []. Some have a conserved sequence motif (G-x-G-x-x-G-x(n)-[DE]) for NAD+ binding [], but others do not, reflecting the diversity of ligands for RCK domains. The C-terminal part is less conserved, being absent in some channels, such as the kefC antiporter from Escherichia coli. It is predicted to bind unidentified ligands and to regulate sulphate, sodium and other transporters. The X-ray structure of several RCK domains has been solved [, , ]. It reveals an alpha-beta fold similar to dehydrogenase enzymes. The domain forms a homodimer, producing a cleft between two lobes. It has a composite structure, with an N-terminal (RCK-N), and a C-terminal (RCK-C) subdomain. The RCK-N subdomain forms a Rossmann fold with two alpha helices on one side of a six stranded parallel beta sheet and three alpha helices on the other side. The RCK-C subdomain is an all-beta-strand fold. It forms an extention of the dimer interface and further stabilises the RCK homodimer [, , ]. Ca2+ is a ligand that opens the channel in a concentration-dependent manner. Two Ca2+ ions are located at the base of a cleft between two RCK domains, coordinated by the carboxylate groups of two glutamate residues, and by an aspartate residue [, , ]. RCK domains occur in at least five different contexts: As a single domain on the C terminus of some K+ channels (for example, many prokaryotic K+ channels). As two tandem RCK domains on the C terminus of some transporters that form gating rings (for example, eukaryotic BK channels). The gating ring has an arrangement of eight identical RCK domains, one from each of the four pore-forming subunits and four from the intracellular solution. As two domains, one at the N terminus and another at the C terminus of transporter (for example, the prokaryotic trk system potassium uptake protein A). As a soluble protein (not part of a K+ channel) consisting of two tandem RCK domains. As a soluble protein consisting of a single RCK domain. This entry represents the N-terminal subdomain of RCK.; GO: 0006813 potassium ion transport; PDB: 3L4B_E 1LSS_C 3LLV_A 2FY8_D 2AEF_A 1LNQ_E 3RBX_C 3KXD_A 2AEJ_A 3RBZ_A ....

>PRK07531 bifunctional 3-hydroxyacyl-CoA dehydrogenase/thioesterase; Validated

Probab=96.39  E-value=0.026  Score=56.40  Aligned_cols=102  Identities=21%  Similarity=0.245  Sum_probs=63.4

Q ss_pred             CEEEEeccCCChhhH-HHHHhhcCCCcEEEEEeCChHHHHHHHHHHH-------hcCC--C--CCCeEEEEccccchhhc
Q 042119          132 KKVAFVGSGPMPLTS-IIMAKHHLTSTHFDNFDIDEAANDVARSIVA-------SDAE--F--EGRMKFLTRDIMEVKEQ  199 (286)
Q Consensus       132 ~~VL~IG~G~lp~ta-i~lA~~~~~g~~V~~iDid~~ai~~Ar~~~~-------~~g~--l--~~~i~f~~~D~~~~~~~  199 (286)
                      ++|.+||+|.+|..- ..+++   .|.+|+.+|++++..+...+..+       .+..  +  ..++++. .|.   ...
T Consensus         5 ~kIavIG~G~MG~~iA~~la~---~G~~V~v~D~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~g~i~~~-~~~---~ea   77 (495)
T PRK07531          5 MKAACIGGGVIGGGWAARFLL---AGIDVAVFDPHPEAERIIGEVLANAERAYAMLTDAPLPPEGRLTFC-ASL---AEA   77 (495)
T ss_pred             CEEEEECcCHHHHHHHHHHHh---CCCeEEEEeCCHHHHHHHHHHHHHHHHHHhhhccchhhhhhceEee-CCH---HHH
Confidence            589999999888653 23343   68899999999999876543221       1110  0  0124432 222   233


Q ss_pred             CCCcceeehhhhccCChhHHHHHHHHHHhhccCCcEEEEeecCc
Q 042119          200 LGEYDCIFLAALVGMSKEEKLTILGHIRKYMKDGGILLVRSAKG  243 (286)
Q Consensus       200 l~~fD~V~~aalvg~~~~~k~~vl~~l~~~l~pgg~lv~r~~~g  243 (286)
                      ..+.|+|+.+..  -+.+-|..++..+.+.++|+. ++..+..|
T Consensus        78 ~~~aD~Vieavp--e~~~vk~~l~~~l~~~~~~~~-iI~SsTsg  118 (495)
T PRK07531         78 VAGADWIQESVP--ERLDLKRRVLAEIDAAARPDA-LIGSSTSG  118 (495)
T ss_pred             hcCCCEEEEcCc--CCHHHHHHHHHHHHhhCCCCc-EEEEcCCC
Confidence            467899997632  233458889999988877775 44544444

>cd08294 leukotriene_B4_DH_like 13-PGR is a bifunctional enzyme with delta-13 15-prostaglandin reductase and leukotriene B4 12 hydroxydehydrogenase activity

Probab=96.39  E-value=0.017  Score=53.20  Aligned_cols=100  Identities=17%  Similarity=0.152  Sum_probs=68.0

Q ss_pred             cCCCCCCEEEEec-cCCChhhHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEccccchhhcC--CC
Q 042119          126 NGVVQPKKVAFVG-SGPMPLTSIIMAKHHLTSTHFDNFDIDEAANDVARSIVASDAEFEGRMKFLTRDIMEVKEQL--GE  202 (286)
Q Consensus       126 ~~~~~~~~VL~IG-~G~lp~tai~lA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~g~l~~~i~f~~~D~~~~~~~l--~~  202 (286)
                      ....++++||..| +|++|..++.+|+.  .|++|++++.+++..+.+++    +| ...-+.....|..+....+  .+
T Consensus       139 ~~~~~g~~vlI~ga~g~vG~~aiqlA~~--~G~~vi~~~~s~~~~~~l~~----~G-a~~vi~~~~~~~~~~v~~~~~~g  211 (329)
T cd08294         139 CKPKAGETVVVNGAAGAVGSLVGQIAKI--KGCKVIGCAGSDDKVAWLKE----LG-FDAVFNYKTVSLEEALKEAAPDG  211 (329)
T ss_pred             cCCCCCCEEEEecCccHHHHHHHHHHHH--cCCEEEEEeCCHHHHHHHHH----cC-CCEEEeCCCccHHHHHHHHCCCC
Confidence            3457889999999 69999999999994  78999999999988777665    56 2222222222221111111  36


Q ss_pred             cceeehhhhccCChhHHHHHHHHHHhhccCCcEEEEee
Q 042119          203 YDCIFLAALVGMSKEEKLTILGHIRKYMKDGGILLVRS  240 (286)
Q Consensus       203 fD~V~~aalvg~~~~~k~~vl~~l~~~l~pgg~lv~r~  240 (286)
                      +|+|+-.  +|    .  ..++...+.++++|.++.-.
T Consensus       212 vd~vld~--~g----~--~~~~~~~~~l~~~G~iv~~g  241 (329)
T cd08294         212 IDCYFDN--VG----G--EFSSTVLSHMNDFGRVAVCG  241 (329)
T ss_pred             cEEEEEC--CC----H--HHHHHHHHhhccCCEEEEEc
Confidence            9998843  22    2  35678889999999988643

Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto- 13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of ac

>cd08254 hydroxyacyl_CoA_DH 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase, N-benzyl-3-pyrrolidinol dehydrogenase, and other MDR family members

Probab=96.36  E-value=0.02  Score=52.71  Aligned_cols=99  Identities=21%  Similarity=0.250  Sum_probs=67.3

Q ss_pred             CCCCCEEEEeccCCChhhHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEccccc-h-hhcCCCcce
Q 042119          128 VVQPKKVAFVGSGPMPLTSIIMAKHHLTSTHFDNFDIDEAANDVARSIVASDAEFEGRMKFLTRDIME-V-KEQLGEYDC  205 (286)
Q Consensus       128 ~~~~~~VL~IG~G~lp~tai~lA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~g~l~~~i~f~~~D~~~-~-~~~l~~fD~  205 (286)
                      ..++.+||..|+|+.|..++.+|++  .|.+|++++.+++..+.+++    .| ...-+.....+..+ + ...-..+|+
T Consensus       163 ~~~~~~vli~g~g~vG~~~~~la~~--~G~~V~~~~~s~~~~~~~~~----~g-~~~~~~~~~~~~~~~~~~~~~~~~D~  235 (338)
T cd08254         163 VKPGETVLVIGLGGLGLNAVQIAKA--MGAAVIAVDIKEEKLELAKE----LG-ADEVLNSLDDSPKDKKAAGLGGGFDV  235 (338)
T ss_pred             CCCCCEEEEECCcHHHHHHHHHHHH--cCCEEEEEcCCHHHHHHHHH----hC-CCEEEcCCCcCHHHHHHHhcCCCceE
Confidence            5778999999999889999999994  78999999999998877755    45 21111111111111 0 112236999


Q ss_pred             eehhhhccCChhHHHHHHHHHHhhccCCcEEEEee
Q 042119          206 IFLAALVGMSKEEKLTILGHIRKYMKDGGILLVRS  240 (286)
Q Consensus       206 V~~aalvg~~~~~k~~vl~~l~~~l~pgg~lv~r~  240 (286)
                      |+.+...       ...++++.+.|++||.++.-.
T Consensus       236 vid~~g~-------~~~~~~~~~~l~~~G~~v~~g  263 (338)
T cd08254         236 IFDFVGT-------QPTFEDAQKAVKPGGRIVVVG  263 (338)
T ss_pred             EEECCCC-------HHHHHHHHHHhhcCCEEEEEC
Confidence            8854321       246778899999999998764

This group contains enzymes of the zinc-dependent alcohol dehydrogenase family, including members (aka MDR) identified as 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase and N-benzyl-3-pyrrolidinol dehydrogenase. 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase catalyzes the conversion of 6-Hydroxycyclohex-1-enecarbonyl-CoA and NAD+ to 6-Ketoxycyclohex-1-ene-1-carboxyl-CoA,NADH, and H+. This group displays the characteristic catalytic and structural zinc sites of the zinc-dependent alcohol dehydrogenases. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentatio

>cd08293 PTGR2 Prostaglandin reductase

Probab=96.34  E-value=0.022  Score=53.06  Aligned_cols=95  Identities=13%  Similarity=0.184  Sum_probs=63.2

Q ss_pred             CEEEEecc-CCChhhHHHHHhhcCCCc-EEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEccccchhhcC--CCcceee
Q 042119          132 KKVAFVGS-GPMPLTSIIMAKHHLTST-HFDNFDIDEAANDVARSIVASDAEFEGRMKFLTRDIMEVKEQL--GEYDCIF  207 (286)
Q Consensus       132 ~~VL~IG~-G~lp~tai~lA~~~~~g~-~V~~iDid~~ai~~Ar~~~~~~g~l~~~i~f~~~D~~~~~~~l--~~fD~V~  207 (286)
                      ++||..|+ |++|..++.+|++  .|+ +|++++.+++..+.+++.   +| ...-+.....|..+....+  .++|+|+
T Consensus       156 ~~VlI~ga~g~vG~~aiqlAk~--~G~~~Vi~~~~s~~~~~~~~~~---lG-a~~vi~~~~~~~~~~i~~~~~~gvd~vi  229 (345)
T cd08293         156 QTMVVSGAAGACGSLAGQIGRL--LGCSRVVGICGSDEKCQLLKSE---LG-FDAAINYKTDNVAERLRELCPEGVDVYF  229 (345)
T ss_pred             CEEEEECCCcHHHHHHHHHHHH--cCCCEEEEEcCCHHHHHHHHHh---cC-CcEEEECCCCCHHHHHHHHCCCCceEEE
Confidence            89999997 9999999999994  688 899999998877766653   56 2221222212221111111  4699998


Q ss_pred             hhhhccCChhHHHHHHHHHHhhccCCcEEEEee
Q 042119          208 LAALVGMSKEEKLTILGHIRKYMKDGGILLVRS  240 (286)
Q Consensus       208 ~aalvg~~~~~k~~vl~~l~~~l~pgg~lv~r~  240 (286)
                      .+.  |    .  ..+....+.|++||+++.-.
T Consensus       230 d~~--g----~--~~~~~~~~~l~~~G~iv~~G  254 (345)
T cd08293         230 DNV--G----G--EISDTVISQMNENSHIILCG  254 (345)
T ss_pred             ECC--C----c--HHHHHHHHHhccCCEEEEEe
Confidence            542  2    1  13467888999999998643

Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acid

>cd08295 double_bond_reductase_like Arabidopsis alkenal double bond reductase and leukotriene B4 12-hydroxydehydrogenase

Probab=96.34  E-value=0.024  Score=52.90  Aligned_cols=100  Identities=14%  Similarity=0.116  Sum_probs=68.5

Q ss_pred             CCCCCCEEEEecc-CCChhhHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEc-cccchhhcC--CC
Q 042119          127 GVVQPKKVAFVGS-GPMPLTSIIMAKHHLTSTHFDNFDIDEAANDVARSIVASDAEFEGRMKFLTR-DIMEVKEQL--GE  202 (286)
Q Consensus       127 ~~~~~~~VL~IG~-G~lp~tai~lA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~g~l~~~i~f~~~-D~~~~~~~l--~~  202 (286)
                      ...++++||..|+ |++|..++.+|+.  .|++|++++.+++..+.+++.   +| ...-+.+... |..+.....  .+
T Consensus       148 ~~~~g~~VlI~Ga~G~vG~~aiqlAk~--~G~~Vi~~~~~~~~~~~~~~~---lG-a~~vi~~~~~~~~~~~i~~~~~~g  221 (338)
T cd08295         148 KPKKGETVFVSAASGAVGQLVGQLAKL--KGCYVVGSAGSDEKVDLLKNK---LG-FDDAFNYKEEPDLDAALKRYFPNG  221 (338)
T ss_pred             CCCCCCEEEEecCccHHHHHHHHHHHH--cCCEEEEEeCCHHHHHHHHHh---cC-CceeEEcCCcccHHHHHHHhCCCC
Confidence            4678999999997 8899999999994  799999999998887776653   46 2222222111 221111111  46


Q ss_pred             cceeehhhhccCChhHHHHHHHHHHhhccCCcEEEEee
Q 042119          203 YDCIFLAALVGMSKEEKLTILGHIRKYMKDGGILLVRS  240 (286)
Q Consensus       203 fD~V~~aalvg~~~~~k~~vl~~l~~~l~pgg~lv~r~  240 (286)
                      +|+|+-+  +|    .  ..+....+.++++|.++.-.
T Consensus       222 vd~v~d~--~g----~--~~~~~~~~~l~~~G~iv~~G  251 (338)
T cd08295         222 IDIYFDN--VG----G--KMLDAVLLNMNLHGRIAACG  251 (338)
T ss_pred             cEEEEEC--CC----H--HHHHHHHHHhccCcEEEEec
Confidence            9999854  23    2  35678889999999998653

This group includes proteins identified as the Arabidopsis alkenal double bond reductase and leukotriene B4 12-hydroxydehydrogenase. The Arabidopsis enzyme, a member of the medium chain dehydrogenase/reductase family, catalyzes the reduction of 7-8-double bond of phenylpropanal substrates as a plant defense mechanism. Prostaglandins and related eicosanoids (lipid mediators involved in host defense and inflamation) are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. Leukotriene B4 (LTB4) can be metabolized by LTB4 20-hydroxylase in

>PRK10083 putative oxidoreductase; Provisional

Probab=96.33  E-value=0.021  Score=53.05  Aligned_cols=103  Identities=17%  Similarity=0.146  Sum_probs=66.5

Q ss_pred             hcCCCCCCEEEEeccCCChhhHHHHHhhcCCCcE-EEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEccccchhhcCC-C
Q 042119          125 ENGVVQPKKVAFVGSGPMPLTSIIMAKHHLTSTH-FDNFDIDEAANDVARSIVASDAEFEGRMKFLTRDIMEVKEQLG-E  202 (286)
Q Consensus       125 ~~~~~~~~~VL~IG~G~lp~tai~lA~~~~~g~~-V~~iDid~~ai~~Ar~~~~~~g~l~~~i~f~~~D~~~~~~~l~-~  202 (286)
                      .....++++|+..|+|++|..++.+|++ ..|++ |+++|.+++..+.+++    +| ...-+.....+..+.....+ +
T Consensus       155 ~~~~~~g~~vlI~g~g~vG~~~~~~a~~-~~G~~~v~~~~~~~~~~~~~~~----~G-a~~~i~~~~~~~~~~~~~~g~~  228 (339)
T PRK10083        155 RTGPTEQDVALIYGAGPVGLTIVQVLKG-VYNVKAVIVADRIDERLALAKE----SG-ADWVINNAQEPLGEALEEKGIK  228 (339)
T ss_pred             hcCCCCCCEEEEECCCHHHHHHHHHHHH-hCCCCEEEEEcCCHHHHHHHHH----hC-CcEEecCccccHHHHHhcCCCC
Confidence            3456788999999999999999999983 34774 8889999998877765    45 21112222222212111111 3


Q ss_pred             cceeehhhhccCChhHHHHHHHHHHhhccCCcEEEEee
Q 042119          203 YDCIFLAALVGMSKEEKLTILGHIRKYMKDGGILLVRS  240 (286)
Q Consensus       203 fD~V~~aalvg~~~~~k~~vl~~l~~~l~pgg~lv~r~  240 (286)
                      +|+|+-+.  |    . ...+....+.++++|+++.-.
T Consensus       229 ~d~vid~~--g----~-~~~~~~~~~~l~~~G~~v~~g  259 (339)
T PRK10083        229 PTLIIDAA--C----H-PSILEEAVTLASPAARIVLMG  259 (339)
T ss_pred             CCEEEECC--C----C-HHHHHHHHHHhhcCCEEEEEc
Confidence            46777543  2    1 135677888999999998865

>cd05188 MDR Medium chain reductase/dehydrogenase (MDR)/zinc-dependent alcohol dehydrogenase-like family

Probab=96.31  E-value=0.017  Score=50.99  Aligned_cols=99  Identities=17%  Similarity=0.209  Sum_probs=66.1

Q ss_pred             CCCCEEEEeccCCChhhHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEccccc-h-hhcCCCccee
Q 042119          129 VQPKKVAFVGSGPMPLTSIIMAKHHLTSTHFDNFDIDEAANDVARSIVASDAEFEGRMKFLTRDIME-V-KEQLGEYDCI  206 (286)
Q Consensus       129 ~~~~~VL~IG~G~lp~tai~lA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~g~l~~~i~f~~~D~~~-~-~~~l~~fD~V  206 (286)
                      .++++||..|+|++|..++.+++.  .|.+|++++.+++..+.+++    .| ...-+.....+... + ....+.+|+|
T Consensus       133 ~~~~~vli~g~~~~G~~~~~~a~~--~g~~v~~~~~~~~~~~~~~~----~g-~~~~~~~~~~~~~~~~~~~~~~~~d~v  205 (271)
T cd05188         133 KPGDTVLVLGAGGVGLLAAQLAKA--AGARVIVTDRSDEKLELAKE----LG-ADHVIDYKEEDLEEELRLTGGGGADVV  205 (271)
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHH--cCCeEEEEcCCHHHHHHHHH----hC-CceeccCCcCCHHHHHHHhcCCCCCEE
Confidence            678999999999888888888884  78999999999988777654    34 11111111111111 0 1122469999


Q ss_pred             ehhhhccCChhHHHHHHHHHHhhccCCcEEEEeec
Q 042119          207 FLAALVGMSKEEKLTILGHIRKYMKDGGILLVRSA  241 (286)
Q Consensus       207 ~~aalvg~~~~~k~~vl~~l~~~l~pgg~lv~r~~  241 (286)
                      +.+...     .  ..+..+.+.|+++|.++.-..
T Consensus       206 i~~~~~-----~--~~~~~~~~~l~~~G~~v~~~~  233 (271)
T cd05188         206 IDAVGG-----P--ETLAQALRLLRPGGRIVVVGG  233 (271)
T ss_pred             EECCCC-----H--HHHHHHHHhcccCCEEEEEcc
Confidence            865321     1  356778889999999987653

The medium chain reductase/dehydrogenases (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH) , quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydro

>PRK09422 ethanol-active dehydrogenase/acetaldehyde-active reductase; Provisional

Probab=96.26  E-value=0.026  Score=52.26  Aligned_cols=102  Identities=15%  Similarity=0.235  Sum_probs=68.5

Q ss_pred             cCCCCCCEEEEeccCCChhhHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEE-ccc-cchhhcCCCc
Q 042119          126 NGVVQPKKVAFVGSGPMPLTSIIMAKHHLTSTHFDNFDIDEAANDVARSIVASDAEFEGRMKFLT-RDI-MEVKEQLGEY  203 (286)
Q Consensus       126 ~~~~~~~~VL~IG~G~lp~tai~lA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~g~l~~~i~f~~-~D~-~~~~~~l~~f  203 (286)
                      ....++.+||..|+|++|..++.+|++ ..|++|++++.+++..+.+++    +| ...-+.... .+. ..+....+++
T Consensus       158 ~~~~~g~~vlV~g~g~vG~~~~~la~~-~~g~~v~~~~~~~~~~~~~~~----~g-~~~v~~~~~~~~~~~~v~~~~~~~  231 (338)
T PRK09422        158 SGIKPGQWIAIYGAGGLGNLALQYAKN-VFNAKVIAVDINDDKLALAKE----VG-ADLTINSKRVEDVAKIIQEKTGGA  231 (338)
T ss_pred             cCCCCCCEEEEECCcHHHHHHHHHHHH-hCCCeEEEEeCChHHHHHHHH----cC-CcEEecccccccHHHHHHHhcCCC
Confidence            456788999999999999999999983 358999999999998887754    45 211111111 111 1111122358


Q ss_pred             ceeehhhhccCChhHHHHHHHHHHhhccCCcEEEEee
Q 042119          204 DCIFLAALVGMSKEEKLTILGHIRKYMKDGGILLVRS  240 (286)
Q Consensus       204 D~V~~aalvg~~~~~k~~vl~~l~~~l~pgg~lv~r~  240 (286)
                      |.++.+..-       ...++...+.++++|.++.-.
T Consensus       232 d~vi~~~~~-------~~~~~~~~~~l~~~G~~v~~g  261 (338)
T PRK09422        232 HAAVVTAVA-------KAAFNQAVDAVRAGGRVVAVG  261 (338)
T ss_pred             cEEEEeCCC-------HHHHHHHHHhccCCCEEEEEe
Confidence            866655421       146788899999999988753

>PRK11064 wecC UDP-N-acetyl-D-mannosamine dehydrogenase; Provisional

Probab=96.24  E-value=0.036  Score=54.24  Aligned_cols=95  Identities=16%  Similarity=0.226  Sum_probs=62.3

Q ss_pred             CEEEEeccCCChhhHHH-HHhhcCCCcEEEEEeCChHHHHHHHH------------HHH---hcCCCCCCeEEEEccccc
Q 042119          132 KKVAFVGSGPMPLTSII-MAKHHLTSTHFDNFDIDEAANDVARS------------IVA---SDAEFEGRMKFLTRDIME  195 (286)
Q Consensus       132 ~~VL~IG~G~lp~tai~-lA~~~~~g~~V~~iDid~~ai~~Ar~------------~~~---~~g~l~~~i~f~~~D~~~  195 (286)
                      ++|.+||.|-+|.+... |++   .|.+|+++|+|++.++.-++            ++.   +.|    +..+.      
T Consensus         4 ~kI~VIGlG~~G~~~A~~La~---~G~~V~~~D~~~~~v~~l~~g~~~~~e~~l~~~l~~~~~~g----~l~~~------   70 (415)
T PRK11064          4 ETISVIGLGYIGLPTAAAFAS---RQKQVIGVDINQHAVDTINRGEIHIVEPDLDMVVKTAVEGG----YLRAT------   70 (415)
T ss_pred             cEEEEECcchhhHHHHHHHHh---CCCEEEEEeCCHHHHHHHHCCCCCcCCCCHHHHHHHHhhcC----ceeee------
Confidence            68999999988876444 444   68999999999998885221            111   112    12221      


Q ss_pred             hhhcCCCcceeehhhhcc------CChhHHHHHHHHHHhhccCCcEEEEeec
Q 042119          196 VKEQLGEYDCIFLAALVG------MSKEEKLTILGHIRKYMKDGGILLVRSA  241 (286)
Q Consensus       196 ~~~~l~~fD~V~~aalvg------~~~~~k~~vl~~l~~~l~pgg~lv~r~~  241 (286)
                        .+....|+||++.-..      .+...-..+++.+.+.+++|.+++..+.
T Consensus        71 --~~~~~aDvvii~vptp~~~~~~~dl~~v~~~~~~i~~~l~~g~iVI~~ST  120 (415)
T PRK11064         71 --TTPEPADAFLIAVPTPFKGDHEPDLTYVEAAAKSIAPVLKKGDLVILEST  120 (415)
T ss_pred             --cccccCCEEEEEcCCCCCCCCCcChHHHHHHHHHHHHhCCCCCEEEEeCC
Confidence              1123679999775432      1123445677889999999999988873

>PRK00066 ldh L-lactate dehydrogenase; Reviewed

Probab=96.22  E-value=0.049  Score=51.37  Aligned_cols=107  Identities=21%  Similarity=0.253  Sum_probs=69.3

Q ss_pred             CCCCEEEEeccCCChhhHHHHHhhcCCCcEEEEEeCChHH-HHHHHHHHHhcCCCCCCeEEEEccccchhhcCCCcceee
Q 042119          129 VQPKKVAFVGSGPMPLTSIIMAKHHLTSTHFDNFDIDEAA-NDVARSIVASDAEFEGRMKFLTRDIMEVKEQLGEYDCIF  207 (286)
Q Consensus       129 ~~~~~VL~IG~G~lp~tai~lA~~~~~g~~V~~iDid~~a-i~~Ar~~~~~~g~l~~~i~f~~~D~~~~~~~l~~fD~V~  207 (286)
                      +.+.||..||+|..|.+.........-..+++-+|++++. -..+..+-.... +..++.+..+|.    .++.+.|+|+
T Consensus         4 ~~~~ki~iiGaG~vG~~~a~~l~~~~~~~el~L~D~~~~~~~g~~~Dl~~~~~-~~~~~~i~~~~~----~~~~~adivI   78 (315)
T PRK00066          4 KQHNKVVLVGDGAVGSSYAYALVNQGIADELVIIDINKEKAEGDAMDLSHAVP-FTSPTKIYAGDY----SDCKDADLVV   78 (315)
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCCchhHHHHHHHHhhcc-ccCCeEEEeCCH----HHhCCCCEEE
Confidence            5678999999999888877655421222379999998774 477777766665 334566665443    3457899998


Q ss_pred             hhhhc----cCChhH----HHHHHHHHHhhc---cCCcEEEEee
Q 042119          208 LAALV----GMSKEE----KLTILGHIRKYM---KDGGILLVRS  240 (286)
Q Consensus       208 ~aalv----g~~~~~----k~~vl~~l~~~l---~pgg~lv~r~  240 (286)
                      +.+-+    ||+..+    ...++.++...+   .|+|.+++-+
T Consensus        79 itag~~~k~g~~R~dll~~N~~i~~~i~~~i~~~~~~~~vivvs  122 (315)
T PRK00066         79 ITAGAPQKPGETRLDLVEKNLKIFKSIVGEVMASGFDGIFLVAS  122 (315)
T ss_pred             EecCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEcc
Confidence            87755    444333    334445544433   3788877754

>TIGR02440 FadJ fatty oxidation complex, alpha subunit FadJ

Probab=96.21  E-value=0.022  Score=59.32  Aligned_cols=100  Identities=16%  Similarity=0.096  Sum_probs=72.2

Q ss_pred             CEEEEeccCCChhhHHHH-HhhcCCCcEEEEEeCChHHHHHHHHHHHh-------cCCC--------CCCeEEEEccccc
Q 042119          132 KKVAFVGSGPMPLTSIIM-AKHHLTSTHFDNFDIDEAANDVARSIVAS-------DAEF--------EGRMKFLTRDIME  195 (286)
Q Consensus       132 ~~VL~IG~G~lp~tai~l-A~~~~~g~~V~~iDid~~ai~~Ar~~~~~-------~g~l--------~~~i~f~~~D~~~  195 (286)
                      ++|..||+|.+|-.-..+ |.  ..|..|+.+|+|+++++.+++.+.+       .|.+        ..+|++. .|.  
T Consensus       305 ~~v~ViGaG~mG~~iA~~~a~--~~G~~V~l~d~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~-~~~--  379 (699)
T TIGR02440       305 KKVGILGGGLMGGGIASVTAT--KAGIPVRIKDINPQGINNALKYAWKLLDKGVKRRHMTPAERDNQMALITGT-TDY--  379 (699)
T ss_pred             cEEEEECCcHHHHHHHHHHHH--HcCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHcCeEEe-CCh--
Confidence            689999999998764433 32  2689999999999999998766532       1211        1345543 222  


Q ss_pred             hhhcCCCcceeehhhhccCChhHHHHHHHHHHhhccCCcEEEEee
Q 042119          196 VKEQLGEYDCIFLAALVGMSKEEKLTILGHIRKYMKDGGILLVRS  240 (286)
Q Consensus       196 ~~~~l~~fD~V~~aalvg~~~~~k~~vl~~l~~~l~pgg~lv~r~  240 (286)
                        ..+.+.|+|+.+..  .+.+-|.+++.++-+.++|+.+|...+
T Consensus       380 --~~~~~adlViEav~--E~l~~K~~v~~~l~~~~~~~~ilasnT  420 (699)
T TIGR02440       380 --RGFKDVDIVIEAVF--EDLALKHQMVKDIEQECAAHTIFASNT  420 (699)
T ss_pred             --HHhccCCEEEEecc--ccHHHHHHHHHHHHhhCCCCcEEEeCC
Confidence              24578999997643  456899999999999999998887654

Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Plays a minor role in aerobic beta-oxidation of fatty acids. FadJI complex is necessary for anaerobic growth on short-chain acids with nitrate as an electron acceptor. Activities include: enoyl-CoA hydratase (EC 4.2.1.17),3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadJ (aka YfcX). This model excludes the FadB of TIGR02437 equivalog.

>PLN02353 probable UDP-glucose 6-dehydrogenase

Probab=96.20  E-value=0.048  Score=54.37  Aligned_cols=104  Identities=16%  Similarity=0.141  Sum_probs=66.3

Q ss_pred             CEEEEeccCCChhhHH-HHHhhcCCCcEEEEEeCChHHHHHHHHHH---HhcCC-------CCCCeEEEEccccchhhcC
Q 042119          132 KKVAFVGSGPMPLTSI-IMAKHHLTSTHFDNFDIDEAANDVARSIV---ASDAE-------FEGRMKFLTRDIMEVKEQL  200 (286)
Q Consensus       132 ~~VL~IG~G~lp~tai-~lA~~~~~g~~V~~iDid~~ai~~Ar~~~---~~~g~-------l~~~i~f~~~D~~~~~~~l  200 (286)
                      ++|..||+|-+|++.- .||+ ...|.+|+++|+|++.++.-++-.   ...|+       ...+.+|. .|.   ...+
T Consensus         2 m~I~ViG~GyvGl~~A~~lA~-~g~g~~V~gvD~~~~~v~~l~~g~~~~~e~gl~ell~~~~~~~l~~t-~~~---~~~i   76 (473)
T PLN02353          2 VKICCIGAGYVGGPTMAVIAL-KCPDIEVVVVDISVPRIDAWNSDQLPIYEPGLDEVVKQCRGKNLFFS-TDV---EKHV   76 (473)
T ss_pred             CEEEEECCCHHHHHHHHHHHh-cCCCCeEEEEECCHHHHHHHHcCCCccCCCCHHHHHHHhhcCCEEEE-cCH---HHHH
Confidence            5899999999887654 4554 234688999999999988743210   01110       01234342 222   2234


Q ss_pred             CCcceeehhhhcc-----------CChhHHHHHHHHHHhhccCCcEEEEee
Q 042119          201 GEYDCIFLAALVG-----------MSKEEKLTILGHIRKYMKDGGILLVRS  240 (286)
Q Consensus       201 ~~fD~V~~aalvg-----------~~~~~k~~vl~~l~~~l~pgg~lv~r~  240 (286)
                      ...|++|++.-..           .+...-..+.+.|.+++++|.++++++
T Consensus        77 ~~advi~I~V~TP~~~~g~~~~~~~Dls~v~~a~~~i~~~l~~~~lVv~~S  127 (473)
T PLN02353         77 AEADIVFVSVNTPTKTRGLGAGKAADLTYWESAARMIADVSKSDKIVVEKS  127 (473)
T ss_pred             hcCCEEEEEeCCCCCCCCCcCCCCCcHHHHHHHHHHHHhhCCCCcEEEEeC
Confidence            5689998874211           122345678899999999999999887

>cd08232 idonate-5-DH L-idonate 5-dehydrogenase

Probab=96.19  E-value=0.024  Score=52.64  Aligned_cols=100  Identities=19%  Similarity=0.326  Sum_probs=65.7

Q ss_pred             cCCCCCCEEEEeccCCChhhHHHHHhhcCCCc-EEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEccccchhhcCCCcc
Q 042119          126 NGVVQPKKVAFVGSGPMPLTSIIMAKHHLTST-HFDNFDIDEAANDVARSIVASDAEFEGRMKFLTRDIMEVKEQLGEYD  204 (286)
Q Consensus       126 ~~~~~~~~VL~IG~G~lp~tai~lA~~~~~g~-~V~~iDid~~ai~~Ar~~~~~~g~l~~~i~f~~~D~~~~~~~l~~fD  204 (286)
                      ....++.+||..|+|.+|..++.+|++  .|. +|++++.+++..+.+++    .| ...-+.....+..+.......+|
T Consensus       161 ~~~~~~~~VLI~g~g~vG~~~~~lak~--~G~~~v~~~~~s~~~~~~~~~----~g-~~~vi~~~~~~~~~~~~~~~~vd  233 (339)
T cd08232         161 AGDLAGKRVLVTGAGPIGALVVAAARR--AGAAEIVATDLADAPLAVARA----MG-ADETVNLARDPLAAYAADKGDFD  233 (339)
T ss_pred             cCCCCCCEEEEECCCHHHHHHHHHHHH--cCCcEEEEECCCHHHHHHHHH----cC-CCEEEcCCchhhhhhhccCCCcc
Confidence            333478999999999889999999984  687 89999999888776655    35 21111111111112222223599


Q ss_pred             eeehhhhccCChhHHHHHHHHHHhhccCCcEEEEe
Q 042119          205 CIFLAALVGMSKEEKLTILGHIRKYMKDGGILLVR  239 (286)
Q Consensus       205 ~V~~aalvg~~~~~k~~vl~~l~~~l~pgg~lv~r  239 (286)
                      +|+-+...       ...++.+.+.|+++|+++.-
T Consensus       234 ~vld~~g~-------~~~~~~~~~~L~~~G~~v~~  261 (339)
T cd08232         234 VVFEASGA-------PAALASALRVVRPGGTVVQV  261 (339)
T ss_pred             EEEECCCC-------HHHHHHHHHHHhcCCEEEEE
Confidence            99865321       13567888999999998864

L-idonate 5-dehydrogenase (L-ido 5-DH ) catalyzes the conversion of L-lodonate to 5-ketogluconate in the metabolism of L-Idonate to 6-P-gluconate. In E. coli, this GntII pathway is a subsidiary pathway to the canonical GntI system, which also phosphorylates and transports gluconate. L-ido 5-DH is found in an operon with a regulator indR, transporter idnT, 5-keto-D-gluconate 5-reductase, and Gnt kinase. L-ido 5-DH is a zinc-dependent alcohol dehydrogenase-like protein. The alcohol dehydrogenase ADH-like family of proteins is a diverse group of proteins related to the first identified member, class I mammalian ADH. This group is also called the medium chain dehydrogenases/reductase family (MDR) which displays a broad range of activities and are distinguished from the smaller short chain dehydrogenases(~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domai

>PF04445 SAM_MT: Putative SAM-dependent methyltransferase; InterPro: IPR007536 This family of proteins is functionally uncharacterised

Probab=96.17  E-value=0.0088  Score=54.20  Aligned_cols=82  Identities=12%  Similarity=0.263  Sum_probs=50.5

Q ss_pred             CCCCCC--EEEEeccCCChhhHHHHHhhcCCCcEEEEEeCChHHHHHHHHH---HHhcCCC----CCCeEEEEccccchh
Q 042119          127 GVVQPK--KVAFVGSGPMPLTSIIMAKHHLTSTHFDNFDIDEAANDVARSI---VASDAEF----EGRMKFLTRDIMEVK  197 (286)
Q Consensus       127 ~~~~~~--~VL~IG~G~lp~tai~lA~~~~~g~~V~~iDid~~ai~~Ar~~---~~~~g~l----~~~i~f~~~D~~~~~  197 (286)
                      +++++.  +|||.=+| +|-.|+.+|.   .|++|++++.||-...+-+.=   .......    ..||+++++|..+..
T Consensus        70 Glk~~~~~~VLDaTaG-LG~Da~vlA~---~G~~V~~lErspvia~Ll~dGL~r~~~~~~~~~~~~~ri~l~~~d~~~~L  145 (234)
T PF04445_consen   70 GLKPGMRPSVLDATAG-LGRDAFVLAS---LGCKVTGLERSPVIAALLKDGLKRAQQDPELLAEAMRRIQLIHGDALEYL  145 (234)
T ss_dssp             T-BTTB---EEETT-T-TSHHHHHHHH---HT--EEEEE--HHHHHHHHHHHHHHHHSTTTHHHHHHHEEEEES-CCCHC
T ss_pred             CCCCCCCCEEEECCCc-chHHHHHHHc---cCCeEEEEECCHHHHHHHHHHHHHHHhCcHhHHHHHhCCEEEcCCHHHHH
Confidence            455553  99999999 8999999997   589999999999876665543   3332211    248999999998866


Q ss_pred             h-cCCCcceeehhhhc
Q 042119          198 E-QLGEYDCIFLAALV  212 (286)
Q Consensus       198 ~-~l~~fD~V~~aalv  212 (286)
                      . ....||+|+++-+.
T Consensus       146 ~~~~~s~DVVY~DPMF  161 (234)
T PF04445_consen  146 RQPDNSFDVVYFDPMF  161 (234)
T ss_dssp             CCHSS--SEEEE--S-
T ss_pred             hhcCCCCCEEEECCCC
Confidence            5 23579999998543

; PDB: 2PGX_A 2OYR_A 2R6Z_A 2PKW_A.

>COG0287 TyrA Prephenate dehydrogenase [Amino acid transport and metabolism]

Probab=96.17  E-value=0.02  Score=53.20  Aligned_cols=95  Identities=20%  Similarity=0.108  Sum_probs=64.5

Q ss_pred             CCEEEEeccCCChhhHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEccccchhhcCCCcceeehhh
Q 042119          131 PKKVAFVGSGPMPLTSIIMAKHHLTSTHFDNFDIDEAANDVARSIVASDAEFEGRMKFLTRDIMEVKEQLGEYDCIFLAA  210 (286)
Q Consensus       131 ~~~VL~IG~G~lp~tai~lA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~g~l~~~i~f~~~D~~~~~~~l~~fD~V~~aa  210 (286)
                      -.+|..+|.|-+|-+-....+.......|+|.|.+.+..+.|.+    +| +.+.    ..+.. ........|+|+++.
T Consensus         3 ~~~v~IvG~GliG~s~a~~l~~~g~~v~i~g~d~~~~~~~~a~~----lg-v~d~----~~~~~-~~~~~~~aD~Vivav   72 (279)
T COG0287           3 SMKVGIVGLGLMGGSLARALKEAGLVVRIIGRDRSAATLKAALE----LG-VIDE----LTVAG-LAEAAAEADLVIVAV   72 (279)
T ss_pred             CcEEEEECCchHHHHHHHHHHHcCCeEEEEeecCcHHHHHHHhh----cC-cccc----cccch-hhhhcccCCEEEEec
Confidence            36899999999988766555544445566888888777766665    45 2221    11111 122335689999986


Q ss_pred             hccCChhHHHHHHHHHHhhccCCcEEEEe
Q 042119          211 LVGMSKEEKLTILGHIRKYMKDGGILLVR  239 (286)
Q Consensus       211 lvg~~~~~k~~vl~~l~~~l~pgg~lv~r  239 (286)
                      -+    ..-.++++++.+.++||..|+=-
T Consensus        73 Pi----~~~~~~l~~l~~~l~~g~iv~Dv   97 (279)
T COG0287          73 PI----EATEEVLKELAPHLKKGAIVTDV   97 (279)
T ss_pred             cH----HHHHHHHHHhcccCCCCCEEEec
Confidence            55    56678999999999999887653

>COG1250 FadB 3-hydroxyacyl-CoA dehydrogenase [Lipid metabolism]

Probab=96.15  E-value=0.017  Score=54.42  Aligned_cols=106  Identities=20%  Similarity=0.192  Sum_probs=71.6

Q ss_pred             CCEEEEeccCCChhhHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhc-CCCCCCeEEEEccccch---------hhcC
Q 042119          131 PKKVAFVGSGPMPLTSIIMAKHHLTSTHFDNFDIDEAANDVARSIVASD-AEFEGRMKFLTRDIMEV---------KEQL  200 (286)
Q Consensus       131 ~~~VL~IG~G~lp~tai~lA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~-g~l~~~i~f~~~D~~~~---------~~~l  200 (286)
                      -++|..||+|.+|-.-...+.  .-|..|+-+|+++++++.+++.+++. ..+..+-.+-..+....         ..++
T Consensus         3 i~kv~ViGaG~MG~gIA~~~A--~~G~~V~l~D~~~~~~~~~~~~i~~~l~k~~~~g~l~~~~~~~~l~~i~~~~~~~~l   80 (307)
T COG1250           3 IKKVAVIGAGVMGAGIAAVFA--LAGYDVVLKDISPEALERALAYIEKNLEKLVEKGKLTEEEADAALARITPTTDLAAL   80 (307)
T ss_pred             ccEEEEEcccchhHHHHHHHh--hcCCceEEEeCCHHHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHhhccccCchhHh
Confidence            368999999999865444433  36699999999999999998876543 00001100100000000         1145


Q ss_pred             CCcceeehhhhccCChhHHHHHHHHHHhhccCCcEEEEee
Q 042119          201 GEYDCIFLAALVGMSKEEKLTILGHIRKYMKDGGILLVRS  240 (286)
Q Consensus       201 ~~fD~V~~aalvg~~~~~k~~vl~~l~~~l~pgg~lv~r~  240 (286)
                      .+.|+|+.+..  .+.+-|.++++++-++.+|+++|.-.+
T Consensus        81 ~~~DlVIEAv~--E~levK~~vf~~l~~~~~~~aIlASNT  118 (307)
T COG1250          81 KDADLVIEAVV--EDLELKKQVFAELEALAKPDAILASNT  118 (307)
T ss_pred             ccCCEEEEecc--ccHHHHHHHHHHHHhhcCCCcEEeecc
Confidence            67999997754  356889999999999999999988764

>COG0275 Predicted S-adenosylmethionine-dependent methyltransferase involved in cell envelope biogenesis [Cell envelope biogenesis, outer membrane]

Probab=96.14  E-value=0.03  Score=52.53  Aligned_cols=82  Identities=20%  Similarity=0.149  Sum_probs=62.9

Q ss_pred             CCCCCCEEEEeccCCChhhHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEccccchhhcC-----C
Q 042119          127 GVVQPKKVAFVGSGPMPLTSIIMAKHHLTSTHFDNFDIDEAANDVARSIVASDAEFEGRMKFLTRDIMEVKEQL-----G  201 (286)
Q Consensus       127 ~~~~~~~VL~IG~G~lp~tai~lA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~g~l~~~i~f~~~D~~~~~~~l-----~  201 (286)
                      .+.++.-.+|.==|.+|-|-..|.+ ....++++++|.||.|++.|++.+...+   +|+++++++-.++...+     +
T Consensus        20 ~~~~~giyiD~TlG~GGHS~~iL~~-l~~~~~li~~DrD~~Ai~~a~~~l~~~~---~r~~~v~~~F~~l~~~l~~~~i~   95 (314)
T COG0275          20 APKPDGIYIDGTLGAGGHSRAILEK-LPDLGRLIGIDRDPQAIAIAKERLKEFD---GRVTLVHGNFANLAEALKELGIG   95 (314)
T ss_pred             ccCCCcEEEEecCCCcHhHHHHHHh-CCCCCeEEEEcCCHHHHHHHHHHhhccC---CcEEEEeCcHHHHHHHHHhcCCC
Confidence            5577788888777777999888887 3445779999999999999999988766   69999999766554432     3


Q ss_pred             Ccceeehhhhc
Q 042119          202 EYDCIFLAALV  212 (286)
Q Consensus       202 ~fD~V~~aalv  212 (286)
                      .+|-|+++-.|
T Consensus        96 ~vDGiL~DLGV  106 (314)
T COG0275          96 KVDGILLDLGV  106 (314)
T ss_pred             ceeEEEEeccC
Confidence            56766665444

>COG0604 Qor NADPH:quinone reductase and related Zn-dependent oxidoreductases [Energy production and conversion / General function prediction only]

Probab=96.09  E-value=0.031  Score=52.91  Aligned_cols=101  Identities=16%  Similarity=0.184  Sum_probs=70.5

Q ss_pred             cCCCCCCEEEEec-cCCChhhHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEccccchhhcCC---
Q 042119          126 NGVVQPKKVAFVG-SGPMPLTSIIMAKHHLTSTHFDNFDIDEAANDVARSIVASDAEFEGRMKFLTRDIMEVKEQLG---  201 (286)
Q Consensus       126 ~~~~~~~~VL~IG-~G~lp~tai~lA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~g~l~~~i~f~~~D~~~~~~~l~---  201 (286)
                      ...+++++||..| +|..|..++.||++  .|++++++--+++..+++++    +| -..-+++...|..+...++.   
T Consensus       138 ~~l~~g~~VLV~gaaGgVG~~aiQlAk~--~G~~~v~~~~s~~k~~~~~~----lG-Ad~vi~y~~~~~~~~v~~~t~g~  210 (326)
T COG0604         138 AGLKPGETVLVHGAAGGVGSAAIQLAKA--LGATVVAVVSSSEKLELLKE----LG-ADHVINYREEDFVEQVRELTGGK  210 (326)
T ss_pred             cCCCCCCEEEEecCCchHHHHHHHHHHH--cCCcEEEEecCHHHHHHHHh----cC-CCEEEcCCcccHHHHHHHHcCCC
Confidence            3467899999999 88899999999994  66677777777766555544    56 23345566666554443332   


Q ss_pred             CcceeehhhhccCChhHHHHHHHHHHhhccCCcEEEEeec
Q 042119          202 EYDCIFLAALVGMSKEEKLTILGHIRKYMKDGGILLVRSA  241 (286)
Q Consensus       202 ~fD~V~~aalvg~~~~~k~~vl~~l~~~l~pgg~lv~r~~  241 (286)
                      ++|+|+...  |      ...+....+.|++||+++.-..
T Consensus       211 gvDvv~D~v--G------~~~~~~~l~~l~~~G~lv~ig~  242 (326)
T COG0604         211 GVDVVLDTV--G------GDTFAASLAALAPGGRLVSIGA  242 (326)
T ss_pred             CceEEEECC--C------HHHHHHHHHHhccCCEEEEEec
Confidence            599999542  2      1356667888899999988653

>PF00107 ADH_zinc_N: Zinc-binding dehydrogenase; InterPro: IPR013149 Alcohol dehydrogenase (1

Probab=96.09  E-value=0.0037  Score=50.04  Aligned_cols=88  Identities=19%  Similarity=0.225  Sum_probs=59.8

Q ss_pred             ChhhHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEccccchhhcC---CCcceeehhhhccCChhH
Q 042119          142 MPLTSIIMAKHHLTSTHFDNFDIDEAANDVARSIVASDAEFEGRMKFLTRDIMEVKEQL---GEYDCIFLAALVGMSKEE  218 (286)
Q Consensus       142 lp~tai~lA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~g~l~~~i~f~~~D~~~~~~~l---~~fD~V~~aalvg~~~~~  218 (286)
                      +|+.++.+|+.  .|++|+++|.+++..+.+++    +|. ..-+.....|..+...++   .++|+||.+.-.      
T Consensus         2 vG~~a~q~ak~--~G~~vi~~~~~~~k~~~~~~----~Ga-~~~~~~~~~~~~~~i~~~~~~~~~d~vid~~g~------   68 (130)
T PF00107_consen    2 VGLMAIQLAKA--MGAKVIATDRSEEKLELAKE----LGA-DHVIDYSDDDFVEQIRELTGGRGVDVVIDCVGS------   68 (130)
T ss_dssp             HHHHHHHHHHH--TTSEEEEEESSHHHHHHHHH----TTE-SEEEETTTSSHHHHHHHHTTTSSEEEEEESSSS------
T ss_pred             hHHHHHHHHHH--cCCEEEEEECCHHHHHHHHh----hcc-cccccccccccccccccccccccceEEEEecCc------
Confidence            67889999994  66999999999999888776    451 111111112222222122   369999977532      


Q ss_pred             HHHHHHHHHhhccCCcEEEEeecCc
Q 042119          219 KLTILGHIRKYMKDGGILLVRSAKG  243 (286)
Q Consensus       219 k~~vl~~l~~~l~pgg~lv~r~~~g  243 (286)
                       ...++...+.++|||++++-...+
T Consensus        69 -~~~~~~~~~~l~~~G~~v~vg~~~   92 (130)
T PF00107_consen   69 -GDTLQEAIKLLRPGGRIVVVGVYG   92 (130)
T ss_dssp             -HHHHHHHHHHEEEEEEEEEESSTS
T ss_pred             -HHHHHHHHHHhccCCEEEEEEccC
Confidence             258888999999999999987554

1.1.1 from EC) (ADH) catalyzes the reversible oxidation of alcohols to their corresponding acetaldehyde or ketone with the concomitant reduction of NAD: alcohol + NAD = aldehyde or ketone + NADH Currently three structurally and catalytically different types of alcohol dehydrogenases are known: Zinc-containing 'long-chain' alcohol dehydrogenases. Insect-type, or 'short-chain' alcohol dehydrogenases. Iron-containing alcohol dehydrogenases. Zinc-containing ADH's [, ] are dimeric or tetrameric enzymes that bind two atoms of zinc per subunit. One of the zinc atom is essential for catalytic activity while the other is not. Both zinc atoms are coordinated by either cysteine or histidine residues; the catalytic zinc is coordinated by two cysteines and one histidine. Zinc-containing ADH's are found in bacteria, mammals, plants, and in fungi. In many species there is more than one isozyme (for example, humans have at least six isozymes, yeast have three, etc.). A number of other zinc-dependent dehydrogenases are closely related to zinc ADH [] and are included in this family. Sorbitol dehydrogenase (1.1.1.14 from EC) L-threonine 3-dehydrogenase (1.1.1.103 from EC) Glutathione-dependent formaldehyde dehydrogenase (1.1.1.284 from EC) Mannitol dehydrogenase (1.1.1.255 from EC) In addition, this family includes NADP-dependent quinone oxidoreductase (1.6.5.5 from EC), an enzyme found in bacteria (gene qor), in yeast and in mammals where, in some species such as rodents, it has been recruited as an eye lens protein and is known as zeta-crystallin []. The sequence of quinone oxidoreductase is distantly related to that other zinc-containing alcohol dehydrogenases and it lacks the zinc-ligand residues. The torpedo fish and mammalian synaptic vesicle membrane protein vat-1 is related to qor. This entry represents the cofactor-binding domain of these enzymes, which is normally found towards the C terminus. Structural studies indicate that it forms a classical Rossman fold that reversibly binds NAD(H) [, , ].; GO: 0008270 zinc ion binding, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3PI7_A 3COS_D 1VJ1_A 2ZB3_A 1PIW_B 1Q1N_A 1PS0_A 2EER_B 3KRT_A 1ZSY_A ....

>cd08255 2-desacetyl-2-hydroxyethyl_bacteriochlorophyllide_like 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide and other MDR family members

Probab=96.08  E-value=0.046  Score=49.11  Aligned_cols=97  Identities=20%  Similarity=0.176  Sum_probs=67.2

Q ss_pred             cCCCCCCEEEEeccCCChhhHHHHHhhcCCCcE-EEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEccccchhhcCCCcc
Q 042119          126 NGVVQPKKVAFVGSGPMPLTSIIMAKHHLTSTH-FDNFDIDEAANDVARSIVASDAEFEGRMKFLTRDIMEVKEQLGEYD  204 (286)
Q Consensus       126 ~~~~~~~~VL~IG~G~lp~tai~lA~~~~~g~~-V~~iDid~~ai~~Ar~~~~~~g~l~~~i~f~~~D~~~~~~~l~~fD  204 (286)
                      ....++.+|+..|+|++|..++.+|++  .|.+ |++++.+++..+.+++.    | ..+.+.....+   .. .-.++|
T Consensus        93 ~~~~~g~~vlI~g~g~vg~~~i~~a~~--~g~~~vi~~~~~~~~~~~~~~~----g-~~~~~~~~~~~---~~-~~~~~d  161 (277)
T cd08255          93 AEPRLGERVAVVGLGLVGLLAAQLAKA--AGAREVVGVDPDAARRELAEAL----G-PADPVAADTAD---EI-GGRGAD  161 (277)
T ss_pred             cCCCCCCEEEEECCCHHHHHHHHHHHH--cCCCcEEEECCCHHHHHHHHHc----C-CCccccccchh---hh-cCCCCC
Confidence            345788999999999999999999994  6777 99999999988777764    3 11222111111   11 223699


Q ss_pred             eeehhhhccCChhHHHHHHHHHHhhccCCcEEEEee
Q 042119          205 CIFLAALVGMSKEEKLTILGHIRKYMKDGGILLVRS  240 (286)
Q Consensus       205 ~V~~aalvg~~~~~k~~vl~~l~~~l~pgg~lv~r~  240 (286)
                      +|+.+...     .  ..+....+.|+++|.++.-.
T Consensus       162 ~vl~~~~~-----~--~~~~~~~~~l~~~g~~~~~g  190 (277)
T cd08255         162 VVIEASGS-----P--SALETALRLLRDRGRVVLVG  190 (277)
T ss_pred             EEEEccCC-----h--HHHHHHHHHhcCCcEEEEEe
Confidence            98865321     1  36677888999999998654

This subgroup of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family has members identified as 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase and alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MD

>PRK05562 precorrin-2 dehydrogenase; Provisional

Probab=96.05  E-value=0.04  Score=49.64  Aligned_cols=103  Identities=17%  Similarity=0.178  Sum_probs=65.0

Q ss_pred             CCCCEEEEeccCCChhhHH-HHHhhcCCCcEEEEE--eCChHHHHHHHHHHHhcCCCCCCeEEEEccccchhhcCCCcce
Q 042119          129 VQPKKVAFVGSGPMPLTSI-IMAKHHLTSTHFDNF--DIDEAANDVARSIVASDAEFEGRMKFLTRDIMEVKEQLGEYDC  205 (286)
Q Consensus       129 ~~~~~VL~IG~G~lp~tai-~lA~~~~~g~~V~~i--Did~~ai~~Ar~~~~~~g~l~~~i~f~~~D~~~~~~~l~~fD~  205 (286)
                      ..+++||.||+|..+..-+ .|.+   .|++||.|  +++++..+++.     .    .+++++..+..  +.++.++++
T Consensus        23 ~~~~~VLVVGGG~VA~RK~~~Ll~---~gA~VtVVap~i~~el~~l~~-----~----~~i~~~~r~~~--~~dl~g~~L   88 (223)
T PRK05562         23 SNKIKVLIIGGGKAAFIKGKTFLK---KGCYVYILSKKFSKEFLDLKK-----Y----GNLKLIKGNYD--KEFIKDKHL   88 (223)
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHh---CCCEEEEEcCCCCHHHHHHHh-----C----CCEEEEeCCCC--hHHhCCCcE
Confidence            4678999999998766533 3333   68888888  77777655432     2    36899887753  345678999


Q ss_pred             eehhhhccCChhHHHHHHHHHHhhccCCcEEEE-eecCcceeeecccC
Q 042119          206 IFLAALVGMSKEEKLTILGHIRKYMKDGGILLV-RSAKGARAFLYPVV  252 (286)
Q Consensus       206 V~~aalvg~~~~~k~~vl~~l~~~l~pgg~lv~-r~~~g~r~~lyp~v  252 (286)
                      ||.+.-      ++ ++=+.+++..+.-+.++. .+......|..|.+
T Consensus        89 ViaATd------D~-~vN~~I~~~a~~~~~lvn~vd~p~~~dFi~PAi  129 (223)
T PRK05562         89 IVIATD------DE-KLNNKIRKHCDRLYKLYIDCSDYKKGLCIIPYQ  129 (223)
T ss_pred             EEECCC------CH-HHHHHHHHHHHHcCCeEEEcCCcccCeEEeeeE
Confidence            997632      22 344455555555344443 34344566888854

>cd05213 NAD_bind_Glutamyl_tRNA_reduct NADP-binding domain of glutamyl-tRNA reductase

Probab=95.99  E-value=0.036  Score=52.03  Aligned_cols=98  Identities=17%  Similarity=0.082  Sum_probs=57.6

Q ss_pred             CCCCEEEEeccCCChhhHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEccccchhhcCCCcceeeh
Q 042119          129 VQPKKVAFVGSGPMPLTSIIMAKHHLTSTHFDNFDIDEAANDVARSIVASDAEFEGRMKFLTRDIMEVKEQLGEYDCIFL  208 (286)
Q Consensus       129 ~~~~~VL~IG~G~lp~tai~lA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~g~l~~~i~f~~~D~~~~~~~l~~fD~V~~  208 (286)
                      .++++|+.||+|++|.......+. ..+.+|+.+|++++..   +++.++.| .    ....  ..++...+.++|+||.
T Consensus       176 l~~~~V~ViGaG~iG~~~a~~L~~-~g~~~V~v~~r~~~ra---~~la~~~g-~----~~~~--~~~~~~~l~~aDvVi~  244 (311)
T cd05213         176 LKGKKVLVIGAGEMGELAAKHLAA-KGVAEITIANRTYERA---EELAKELG-G----NAVP--LDELLELLNEADVVIS  244 (311)
T ss_pred             ccCCEEEEECcHHHHHHHHHHHHH-cCCCEEEEEeCCHHHH---HHHHHHcC-C----eEEe--HHHHHHHHhcCCEEEE
Confidence            478999999999998876665552 2346899999998653   23333455 1    2222  1223333467899997


Q ss_pred             hhhccCChhHHHHHHHHHHhhccCCcEEEEeec
Q 042119          209 AALVGMSKEEKLTILGHIRKYMKDGGILLVRSA  241 (286)
Q Consensus       209 aalvg~~~~~k~~vl~~l~~~l~pgg~lv~r~~  241 (286)
                      +.-..   .. ...+..+.+....++.+++.-+
T Consensus       245 at~~~---~~-~~~~~~~~~~~~~~~~~viDla  273 (311)
T cd05213         245 ATGAP---HY-AKIVERAMKKRSGKPRLIVDLA  273 (311)
T ss_pred             CCCCC---ch-HHHHHHHHhhCCCCCeEEEEeC
Confidence            75431   12 3444444443333566776543

Glutamyl-tRNA reductase catalyzes the conversion of glutamyl-tRNA to glutamate-1-semialdehyde, initiating the synthesis of tetrapyrrole. Whereas tRNAs are generally associated with peptide bond formation in protein translation, here the tRNA activates glutamate in the initiation of tetrapyrrole biosynthesis in archaea, plants and many bacteria. In the first step, activated glutamate is reduced to glutamate-1-semi-aldehyde via the NADPH dependent glutamyl-tRNA reductase. Glutamyl-tRNA reductase forms a V-shaped dimer. Each monomer has 3 domains: an N-terminal catalytic domain, a classic nucleotide binding domain, and a C-terminal dimerization domain. Although the representative structure 1GPJ lacks a bound NADPH, a theoretical binding pocket has been described. (PMID 11172694). Amino acid dehydrogenase (DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate,

>cd05297 GH4_alpha_glucosidase_galactosidase Glycoside Hydrolases Family 4; Alpha-glucosidases and alpha-galactosidases

Probab=95.99  E-value=0.0063  Score=59.68  Aligned_cols=101  Identities=26%  Similarity=0.366  Sum_probs=61.3

Q ss_pred             EEEEeccCCChhhHHH---HHhh-cCCCcEEEEEeCChHHHHHHHHHHHhc-CCCCCCeEEE-EccccchhhcCCCccee
Q 042119          133 KVAFVGSGPMPLTSII---MAKH-HLTSTHFDNFDIDEAANDVARSIVASD-AEFEGRMKFL-TRDIMEVKEQLGEYDCI  206 (286)
Q Consensus       133 ~VL~IG~G~lp~tai~---lA~~-~~~g~~V~~iDid~~ai~~Ar~~~~~~-g~l~~~i~f~-~~D~~~~~~~l~~fD~V  206 (286)
                      +|..||+|..|.+...   ++.. ...|.+|+-+|++++.++...+.+++. .......++. +.|.   ...+.+.|+|
T Consensus         2 KIaIIGaGs~G~a~a~~~~i~~~~~~~g~eV~L~Did~e~l~~~~~~~~~~~~~~~~~~~I~~ttD~---~eal~~AD~V   78 (423)
T cd05297           2 KIAFIGAGSVVFTKNLVGDLLKTPELSGSTIALMDIDEERLETVEILAKKIVEELGAPLKIEATTDR---REALDGADFV   78 (423)
T ss_pred             eEEEECCChHHhHHHHHHHHhcCCCCCCCEEEEECCCHHHHHHHHHHHHHHHHhcCCCeEEEEeCCH---HHHhcCCCEE
Confidence            7999999998887444   4422 357789999999999888776654432 0011223443 4453   3455688999


Q ss_pred             ehhhhccCC--------hhHHHHHHHHHHhhccCCcEE
Q 042119          207 FLAALVGMS--------KEEKLTILGHIRKYMKDGGIL  236 (286)
Q Consensus       207 ~~aalvg~~--------~~~k~~vl~~l~~~l~pgg~l  236 (286)
                      +.+..++..        .+.|..+++++.+.+.|||.+
T Consensus        79 i~ai~~~~~~~~~~de~i~~K~g~~~~~~~t~g~ggi~  116 (423)
T cd05297          79 INTIQVGGHEYTETDFEIPEKYGYYQTVGDTSGPGGIF  116 (423)
T ss_pred             EEeeEecCccchhhhhhhHHHcCeeeeccCCCcHHHHH
Confidence            988764221        123444555555555555543

linked to 3D####ucture

>cd08242 MDR_like Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family

Probab=95.97  E-value=0.045  Score=50.30  Aligned_cols=96  Identities=18%  Similarity=0.179  Sum_probs=68.2

Q ss_pred             hcCCCCCCEEEEeccCCChhhHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEccccchhhcCCCcc
Q 042119          125 ENGVVQPKKVAFVGSGPMPLTSIIMAKHHLTSTHFDNFDIDEAANDVARSIVASDAEFEGRMKFLTRDIMEVKEQLGEYD  204 (286)
Q Consensus       125 ~~~~~~~~~VL~IG~G~lp~tai~lA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~g~l~~~i~f~~~D~~~~~~~l~~fD  204 (286)
                      .....++.+|+..|+|.+|..++.+|+.  .|.+|++++.+++..+.+++    +| ....+.+     .+. .....+|
T Consensus       150 ~~~~~~g~~vlV~g~g~vg~~~~q~a~~--~G~~vi~~~~~~~~~~~~~~----~g-~~~~~~~-----~~~-~~~~~~d  216 (319)
T cd08242         150 QVPITPGDKVAVLGDGKLGLLIAQVLAL--TGPDVVLVGRHSEKLALARR----LG-VETVLPD-----EAE-SEGGGFD  216 (319)
T ss_pred             hcCCCCCCEEEEECCCHHHHHHHHHHHH--cCCeEEEEcCCHHHHHHHHH----cC-CcEEeCc-----ccc-ccCCCCC
Confidence            4456788999999999999999999984  78999999999998887776    46 2221111     111 1224699


Q ss_pred             eeehhhhccCChhHHHHHHHHHHhhccCCcEEEEee
Q 042119          205 CIFLAALVGMSKEEKLTILGHIRKYMKDGGILLVRS  240 (286)
Q Consensus       205 ~V~~aalvg~~~~~k~~vl~~l~~~l~pgg~lv~r~  240 (286)
                      +|+-+.  |    . ...++...+.++++|.++...
T Consensus       217 ~vid~~--g----~-~~~~~~~~~~l~~~g~~v~~~  245 (319)
T cd08242         217 VVVEAT--G----S-PSGLELALRLVRPRGTVVLKS  245 (319)
T ss_pred             EEEECC--C----C-hHHHHHHHHHhhcCCEEEEEc
Confidence            998643  2    1 235667788899999998743

This group contains members identified as related to zinc-dependent alcohol dehydrogenase and other members of the MDR family, including threonine dehydrogenase. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group includes various activities, including the founding alcohol dehydrogenase (ADH), quinone reducta

>PF01795 Methyltransf_5: MraW methylase family; InterPro: IPR002903 This is a family of S-adenosyl-L-methionine-dependent methyltransferases, which are found primarily, though not exclusively, in bacteria

Probab=95.97  E-value=0.016  Score=54.68  Aligned_cols=80  Identities=16%  Similarity=0.128  Sum_probs=54.8

Q ss_pred             CCCCCCEEEEeccCCChhhHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEccccchhh------cC
Q 042119          127 GVVQPKKVAFVGSGPMPLTSIIMAKHHLTSTHFDNFDIDEAANDVARSIVASDAEFEGRMKFLTRDIMEVKE------QL  200 (286)
Q Consensus       127 ~~~~~~~VL~IG~G~lp~tai~lA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~g~l~~~i~f~~~D~~~~~~------~l  200 (286)
                      .+.++...+|-=-|.+|-|...|.+  +++++++|+|.||+|++.|++.+...+   +|+.|+.++-.++..      .+
T Consensus        17 ~~~~~g~~vD~T~G~GGHS~aiL~~--~~~~~li~~DrD~~a~~~a~~~l~~~~---~r~~~~~~~F~~l~~~l~~~~~~   91 (310)
T PF01795_consen   17 NPKPGGIYVDCTFGGGGHSKAILEK--LPNGRLIGIDRDPEALERAKERLKKFD---DRFIFIHGNFSNLDEYLKELNGI   91 (310)
T ss_dssp             T--TT-EEEETT-TTSHHHHHHHHT---TT-EEEEEES-HHHHHHHHCCTCCCC---TTEEEEES-GGGHHHHHHHTTTT
T ss_pred             CcCCCceEEeecCCcHHHHHHHHHh--CCCCeEEEecCCHHHHHHHHHHHhhcc---ceEEEEeccHHHHHHHHHHccCC
Confidence            3577788899766667999888876  577999999999999999999866544   799999998776543      22


Q ss_pred             CCcceeehhhh
Q 042119          201 GEYDCIFLAAL  211 (286)
Q Consensus       201 ~~fD~V~~aal  211 (286)
                      ..+|-|+++-.
T Consensus        92 ~~~dgiL~DLG  102 (310)
T PF01795_consen   92 NKVDGILFDLG  102 (310)
T ss_dssp             S-EEEEEEE-S
T ss_pred             CccCEEEEccc
Confidence            36777776643

The Escherichia coli protein is essential and has been linked to peptidoglycan biosynthesis [, ].; GO: 0008168 methyltransferase activity; PDB: 1N2X_A 1M6Y_A 1WG8_A 3TKA_A.

>TIGR01470 cysG_Nterm siroheme synthase, N-terminal domain

Probab=95.95  E-value=0.034  Score=49.23  Aligned_cols=105  Identities=13%  Similarity=0.180  Sum_probs=63.8

Q ss_pred             CCCEEEEeccCCChhhHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEccccchhhcCCCcceeehh
Q 042119          130 QPKKVAFVGSGPMPLTSIIMAKHHLTSTHFDNFDIDEAANDVARSIVASDAEFEGRMKFLTRDIMEVKEQLGEYDCIFLA  209 (286)
Q Consensus       130 ~~~~VL~IG~G~lp~tai~lA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~g~l~~~i~f~~~D~~~~~~~l~~fD~V~~a  209 (286)
                      .+++||.||+|..+...+....  ..|++|+.++.+..  +.-+++ ...|    +++++.++..  ..++.++|+|+.+
T Consensus         8 ~gk~vlVvGgG~va~rk~~~Ll--~~ga~VtVvsp~~~--~~l~~l-~~~~----~i~~~~~~~~--~~dl~~~~lVi~a   76 (205)
T TIGR01470         8 EGRAVLVVGGGDVALRKARLLL--KAGAQLRVIAEELE--SELTLL-AEQG----GITWLARCFD--ADILEGAFLVIAA   76 (205)
T ss_pred             CCCeEEEECcCHHHHHHHHHHH--HCCCEEEEEcCCCC--HHHHHH-HHcC----CEEEEeCCCC--HHHhCCcEEEEEC
Confidence            4689999999987776443332  37899999987654  222222 2223    6899988864  3456789999866


Q ss_pred             hhccCChhHHHHHHHHHHhhccCCcEEEEe-ecCcceeeecccC
Q 042119          210 ALVGMSKEEKLTILGHIRKYMKDGGILLVR-SAKGARAFLYPVV  252 (286)
Q Consensus       210 alvg~~~~~k~~vl~~l~~~l~pgg~lv~r-~~~g~r~~lyp~v  252 (286)
                      --.   .+..    ..+....+.-|+++-. +......|..|.+
T Consensus        77 t~d---~~ln----~~i~~~a~~~~ilvn~~d~~e~~~f~~pa~  113 (205)
T TIGR01470        77 TDD---EELN----RRVAHAARARGVPVNVVDDPELCSFIFPSI  113 (205)
T ss_pred             CCC---HHHH----HHHHHHHHHcCCEEEECCCcccCeEEEeeE
Confidence            321   1222    3444444455666643 2333456777743

This model represents a subfamily of CysG N-terminal region-related sequences. All sequences in the seed alignment for this model are N-terminal regions of known or predicted siroheme synthases. The C-terminal region of each is uroporphyrin-III C-methyltransferase (EC 2.1.1.107), which catalyzes the first step committed to the biosynthesis of either siroheme or cobalamin (vitamin B12) rather than protoheme (heme). The region represented by this model completes the process of oxidation and iron insertion to yield siroheme. Siroheme is a cofactor for nitrite and sulfite reductases, so siroheme synthase is CysG of cysteine biosynthesis in some organisms.

>PRK06522 2-dehydropantoate 2-reductase; Reviewed

Probab=95.91  E-value=0.051  Score=49.90  Aligned_cols=94  Identities=16%  Similarity=0.156  Sum_probs=56.9

Q ss_pred             CEEEEeccCCChhhHHH-HHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCC---CCeEEEEccccchhhcCCCcceee
Q 042119          132 KKVAFVGSGPMPLTSII-MAKHHLTSTHFDNFDIDEAANDVARSIVASDAEFE---GRMKFLTRDIMEVKEQLGEYDCIF  207 (286)
Q Consensus       132 ~~VL~IG~G~lp~tai~-lA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~g~l~---~~i~f~~~D~~~~~~~l~~fD~V~  207 (286)
                      ++|+.||+|.+|..... |++   .|.+|+.+|.+++.++..++    .| +.   ...... ....+-..+...+|+|+
T Consensus         1 m~I~IiG~G~~G~~~a~~L~~---~g~~V~~~~r~~~~~~~~~~----~g-~~~~~~~~~~~-~~~~~~~~~~~~~d~vi   71 (304)
T PRK06522          1 MKIAILGAGAIGGLFGAALAQ---AGHDVTLVARRGAHLDALNE----NG-LRLEDGEITVP-VLAADDPAELGPQDLVI   71 (304)
T ss_pred             CEEEEECCCHHHHHHHHHHHh---CCCeEEEEECChHHHHHHHH----cC-CcccCCceeec-ccCCCChhHcCCCCEEE
Confidence            47999999998864333 333   67899999998877654443    24 21   111110 00111112236799999


Q ss_pred             hhhhccCChhHHHHHHHHHHhhccCCcEEEE
Q 042119          208 LAALVGMSKEEKLTILGHIRKYMKDGGILLV  238 (286)
Q Consensus       208 ~aalvg~~~~~k~~vl~~l~~~l~pgg~lv~  238 (286)
                      ++.-.    .+-..+++.+.+.+.++..++.
T Consensus        72 la~k~----~~~~~~~~~l~~~l~~~~~iv~   98 (304)
T PRK06522         72 LAVKA----YQLPAALPSLAPLLGPDTPVLF   98 (304)
T ss_pred             Eeccc----ccHHHHHHHHhhhcCCCCEEEE
Confidence            77321    2445788899988888766654

>KOG2352 consensus Predicted spermine/spermidine synthase [Amino acid transport and metabolism]

Probab=95.91  E-value=0.0091  Score=59.03  Aligned_cols=108  Identities=18%  Similarity=0.164  Sum_probs=79.1

Q ss_pred             CCCCEEEEeccCCChhhHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEccccchhh-------cCC
Q 042119          129 VQPKKVAFVGSGPMPLTSIIMAKHHLTSTHFDNFDIDEAANDVARSIVASDAEFEGRMKFLTRDIMEVKE-------QLG  201 (286)
Q Consensus       129 ~~~~~VL~IG~G~lp~tai~lA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~g~l~~~i~f~~~D~~~~~~-------~l~  201 (286)
                      ..+.++|.||=|.+++.+.....  +|.+++|++++||++++.|++.+.-..  ++|.+.+..|+.+...       +..
T Consensus       294 ~~~~~~lvvg~ggG~l~sfl~~~--~p~~~i~~ve~dP~~l~va~q~f~f~q--~~r~~V~i~dGl~~~~~~~k~~~~~~  369 (482)
T KOG2352|consen  294 DTGGKQLVVGLGGGGLPSFLHMS--LPKFQITAVEIDPEMLEVATQYFGFMQ--SDRNKVHIADGLDFLQRTAKSQQEDI  369 (482)
T ss_pred             cccCcEEEEecCCCccccceeee--cCccceeEEEEChhHhhccHhhhchhh--hhhhhhhHhhchHHHHHHhhcccccc
Confidence            45567888887777777666554  789999999999999999999976544  2467788888865433       223


Q ss_pred             Ccceeehhh----hccCChhH----HHHHHHHHHhhccCCcEEEEee
Q 042119          202 EYDCIFLAA----LVGMSKEE----KLTILGHIRKYMKDGGILLVRS  240 (286)
Q Consensus       202 ~fD~V~~aa----lvg~~~~~----k~~vl~~l~~~l~pgg~lv~r~  240 (286)
                      .||+++++.    ..||..++    -..++..+...+.|.|.+++.-
T Consensus       370 ~~dvl~~dvds~d~~g~~~pp~~fva~~~l~~~k~~l~p~g~f~inl  416 (482)
T KOG2352|consen  370 CPDVLMVDVDSKDSHGMQCPPPAFVAQVALQPVKMILPPRGMFIINL  416 (482)
T ss_pred             CCcEEEEECCCCCcccCcCCchHHHHHHHHHHHhhccCccceEEEEE
Confidence            699998753    12443322    3468889999999999998753

>cd08231 MDR_TM0436_like Hypothetical enzyme TM0436 resembles the zinc-dependent alcohol dehydrogenases (ADH)

Probab=95.91  E-value=0.053  Score=50.96  Aligned_cols=102  Identities=16%  Similarity=0.131  Sum_probs=67.0

Q ss_pred             hcCC-CCCCEEEEeccCCChhhHHHHHhhcCCCc-EEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEcccc----chhh
Q 042119          125 ENGV-VQPKKVAFVGSGPMPLTSIIMAKHHLTST-HFDNFDIDEAANDVARSIVASDAEFEGRMKFLTRDIM----EVKE  198 (286)
Q Consensus       125 ~~~~-~~~~~VL~IG~G~lp~tai~lA~~~~~g~-~V~~iDid~~ai~~Ar~~~~~~g~l~~~i~f~~~D~~----~~~~  198 (286)
                      +... .++.+||..|+|++|..++.+|++  .|+ +|++++.+++..+.++    ++| ...-+.....+..    .+..
T Consensus       171 ~~~~~~~g~~vlI~g~g~vG~~~~~lak~--~G~~~v~~~~~~~~~~~~~~----~~g-~~~vi~~~~~~~~~~~~~i~~  243 (361)
T cd08231         171 RAGPVGAGDTVVVQGAGPLGLYAVAAAKL--AGARRVIVIDGSPERLELAR----EFG-ADATIDIDELPDPQRRAIVRD  243 (361)
T ss_pred             hccCCCCCCEEEEECCCHHHHHHHHHHHH--cCCCeEEEEcCCHHHHHHHH----HcC-CCeEEcCcccccHHHHHHHHH
Confidence            3343 378999999999999999999994  688 9999999988776664    356 2211122111110    1111


Q ss_pred             --cCCCcceeehhhhccCChhHHHHHHHHHHhhccCCcEEEEee
Q 042119          199 --QLGEYDCIFLAALVGMSKEEKLTILGHIRKYMKDGGILLVRS  240 (286)
Q Consensus       199 --~l~~fD~V~~aalvg~~~~~k~~vl~~l~~~l~pgg~lv~r~  240 (286)
                        +-..+|+|+-+..-       ...+....+.|+++|.++.-.
T Consensus       244 ~~~~~~~d~vid~~g~-------~~~~~~~~~~l~~~G~~v~~g  280 (361)
T cd08231         244 ITGGRGADVVIEASGH-------PAAVPEGLELLRRGGTYVLVG  280 (361)
T ss_pred             HhCCCCCcEEEECCCC-------hHHHHHHHHHhccCCEEEEEc
Confidence              12369999855321       135667788999999998754

This group contains the hypothetical TM0436 alcohol dehydrogenase from Thermotoga maritima, proteins annotated as 5-exo-alcohol dehydrogenase, and other members of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. MDR, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quino

>cd08291 ETR_like_1 2-enoyl thioester reductase (ETR) like proteins, child 1

Probab=95.90  E-value=0.024  Score=52.54  Aligned_cols=96  Identities=17%  Similarity=0.111  Sum_probs=61.6

Q ss_pred             CCCEEEEe--ccCCChhhHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEccccchhhc---CCCcc
Q 042119          130 QPKKVAFV--GSGPMPLTSIIMAKHHLTSTHFDNFDIDEAANDVARSIVASDAEFEGRMKFLTRDIMEVKEQ---LGEYD  204 (286)
Q Consensus       130 ~~~~VL~I--G~G~lp~tai~lA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~g~l~~~i~f~~~D~~~~~~~---l~~fD  204 (286)
                      ++.+++.+  |+|++|..++.+|+.  .|++|++++.+++..+.+++    +| ...-+.....|..+....   -.++|
T Consensus       142 ~~~~vlv~~~g~g~vG~~a~q~a~~--~G~~vi~~~~~~~~~~~~~~----~g-~~~~i~~~~~~~~~~v~~~~~~~~~d  214 (324)
T cd08291         142 EGAKAVVHTAAASALGRMLVRLCKA--DGIKVINIVRRKEQVDLLKK----IG-AEYVLNSSDPDFLEDLKELIAKLNAT  214 (324)
T ss_pred             CCCcEEEEccCccHHHHHHHHHHHH--cCCEEEEEeCCHHHHHHHHH----cC-CcEEEECCCccHHHHHHHHhCCCCCc
Confidence            45566664  899999999999994  78999999999988877766    56 221122222222111111   13589


Q ss_pred             eeehhhhccCChhHHHHHHHHHHhhccCCcEEEEee
Q 042119          205 CIFLAALVGMSKEEKLTILGHIRKYMKDGGILLVRS  240 (286)
Q Consensus       205 ~V~~aalvg~~~~~k~~vl~~l~~~l~pgg~lv~r~  240 (286)
                      +|+-+.  |    .  .......+.+++||+++.-.
T Consensus       215 ~vid~~--g----~--~~~~~~~~~l~~~G~~v~~g  242 (324)
T cd08291         215 IFFDAV--G----G--GLTGQILLAMPYGSTLYVYG  242 (324)
T ss_pred             EEEECC--C----c--HHHHHHHHhhCCCCEEEEEE
Confidence            998543  2    1  12345677889999988754

2-enoyl thioester reductase (ETR) like proteins. ETR catalyzes the NADPH-dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the 2-enoyl thioester reductase (ETR) like proteins. ETR catalyzes the NADPH-dependent dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordin

>COG5459 Predicted rRNA methylase [Translation, ribosomal structure and biogenesis]

Probab=95.90  E-value=0.021  Score=54.60  Aligned_cols=109  Identities=15%  Similarity=0.208  Sum_probs=70.1

Q ss_pred             CCCCCEEEEeccCCChhhHHHHHhhcCCCc-EEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEccccchhhcCC---Cc
Q 042119          128 VVQPKKVAFVGSGPMPLTSIIMAKHHLTST-HFDNFDIDEAANDVARSIVASDAEFEGRMKFLTRDIMEVKEQLG---EY  203 (286)
Q Consensus       128 ~~~~~~VL~IG~G~lp~tai~lA~~~~~g~-~V~~iDid~~ai~~Ar~~~~~~g~l~~~i~f~~~D~~~~~~~l~---~f  203 (286)
                      .-.|++|||+|.||+  |.++-+....|.. .++.++-||..-+....+.+..+ . .+-.+..+|+..-..++.   .|
T Consensus       111 dfapqsiLDvG~GPg--tgl~A~n~i~Pdl~sa~ile~sp~lrkV~~tl~~nv~-t-~~td~r~s~vt~dRl~lp~ad~y  186 (484)
T COG5459         111 DFAPQSILDVGAGPG--TGLWALNDIWPDLKSAVILEASPALRKVGDTLAENVS-T-EKTDWRASDVTEDRLSLPAADLY  186 (484)
T ss_pred             CcCcchhhccCCCCc--hhhhhhcccCCCchhhhhhccCHHHHHHHHHHHhhcc-c-ccCCCCCCccchhccCCCcccee
Confidence            357788999999973  4554443244543 46777888888887777766655 2 334555666644333332   57


Q ss_pred             ceeehhh-hccC-ChhHHHHHHHHHHhhccCCcEEEEee
Q 042119          204 DCIFLAA-LVGM-SKEEKLTILGHIRKYMKDGGILLVRS  240 (286)
Q Consensus       204 D~V~~aa-lvg~-~~~~k~~vl~~l~~~l~pgg~lv~r~  240 (286)
                      |++++.. ++.+ ...+-...+++++..++|||.+++-.
T Consensus       187 tl~i~~~eLl~d~~ek~i~~~ie~lw~l~~~gg~lVivE  225 (484)
T COG5459         187 TLAIVLDELLPDGNEKPIQVNIERLWNLLAPGGHLVIVE  225 (484)
T ss_pred             ehhhhhhhhccccCcchHHHHHHHHHHhccCCCeEEEEe
Confidence            8777543 4433 22233558999999999999988854

>TIGR03026 NDP-sugDHase nucleotide sugar dehydrogenase

Probab=95.88  E-value=0.07  Score=51.89  Aligned_cols=100  Identities=21%  Similarity=0.305  Sum_probs=62.5

Q ss_pred             CEEEEeccCCChhhHHH-HHhhcCCCcEEEEEeCChHHHHHHHH------------HHHh-cCCCCCCeEEEEccccchh
Q 042119          132 KKVAFVGSGPMPLTSII-MAKHHLTSTHFDNFDIDEAANDVARS------------IVAS-DAEFEGRMKFLTRDIMEVK  197 (286)
Q Consensus       132 ~~VL~IG~G~lp~tai~-lA~~~~~g~~V~~iDid~~ai~~Ar~------------~~~~-~g~l~~~i~f~~~D~~~~~  197 (286)
                      ++|.+||+|.+|.+... |++   .|.+|+++|++++.++.-++            ++.+ ..  ..++++. .|..   
T Consensus         1 mkI~vIGlG~~G~~lA~~La~---~G~~V~~~d~~~~~v~~l~~g~~~~~e~~l~~~~~~~~~--~g~l~~~-~~~~---   71 (411)
T TIGR03026         1 MKIAVIGLGYVGLPLAALLAD---LGHEVTGVDIDQEKVDKLNKGKSPIYEPGLDELLAKALA--AGRLRAT-TDYE---   71 (411)
T ss_pred             CEEEEECCCchhHHHHHHHHh---cCCeEEEEECCHHHHHHhhcCCCCCCCCCHHHHHHHhhh--cCCeEEE-CCHH---
Confidence            37999999998876443 343   78899999999998765432            1111 00  0234432 2322   


Q ss_pred             hcCCCcceeehhhhccC------ChhHHHHHHHHHHhhccCCcEEEEee
Q 042119          198 EQLGEYDCIFLAALVGM------SKEEKLTILGHIRKYMKDGGILLVRS  240 (286)
Q Consensus       198 ~~l~~fD~V~~aalvg~------~~~~k~~vl~~l~~~l~pgg~lv~r~  240 (286)
                      ....+.|+||++.--..      +...-..+++.+.+.+++|.+++..+
T Consensus        72 ~~~~~advvii~vpt~~~~~~~~d~~~v~~~~~~i~~~l~~g~lvi~~S  120 (411)
T TIGR03026        72 DAIRDADVIIICVPTPLKEDGSPDLSYVESAAETIAKHLRKGATVVLES  120 (411)
T ss_pred             HHHhhCCEEEEEeCCCCCCCCCcChHHHHHHHHHHHHhcCCCCEEEEeC
Confidence            22357899997743211      11234567788888999998888776

All of these enzymes contain three Pfam domains, pfam03721, pfam00984, and pfam03720 for the N-terminal, central, and C-terminal regions respectively.

>COG1889 NOP1 Fibrillarin-like rRNA methylase [Translation, ribosomal structure and biogenesis]

Probab=95.83  E-value=0.12  Score=46.00  Aligned_cols=158  Identities=13%  Similarity=0.188  Sum_probs=100.1

Q ss_pred             hhhhHHHHHHHHhcCCCCCCEEEEeccCCChhhHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEcc
Q 042119          113 VKLSKLEYTILSENGVVQPKKVAFVGSGPMPLTSIIMAKHHLTSTHFDNFDIDEAANDVARSIVASDAEFEGRMKFLTRD  192 (286)
Q Consensus       113 ~~l~~~E~~~l~~~~~~~~~~VL~IG~G~lp~tai~lA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~g~l~~~i~f~~~D  192 (286)
                      .+|+..-...|..+.++++++||.+|.- -|.|.-.++. ..+.+.|.+++.+|....---.++++-    .+|--+-+|
T Consensus        59 SKLaAaIl~Gl~~~pi~~g~~VLYLGAa-sGTTvSHVSD-Iv~~G~iYaVEfs~R~~reLl~~a~~R----~Ni~PIL~D  132 (231)
T COG1889          59 SKLAAAILKGLKNFPIKEGSKVLYLGAA-SGTTVSHVSD-IVGEGRIYAVEFSPRPMRELLDVAEKR----PNIIPILED  132 (231)
T ss_pred             hHHHHHHHcCcccCCcCCCCEEEEeecc-CCCcHhHHHh-ccCCCcEEEEEecchhHHHHHHHHHhC----CCceeeecc
Confidence            4666666667766778999999999996 5888888887 455688999999998876555555543    468888899


Q ss_pred             ccchhhcC----CCcceeehhhhccCChhHHHHHHHHHHhhccCCcEEEEe----ecC---cceeeecccCCcccccCcE
Q 042119          193 IMEVKEQL----GEYDCIFLAALVGMSKEEKLTILGHIRKYMKDGGILLVR----SAK---GARAFLYPVVVEHDLLDFE  261 (286)
Q Consensus       193 ~~~~~~~l----~~fD~V~~aalvg~~~~~k~~vl~~l~~~l~pgg~lv~r----~~~---g~r~~lyp~v~~~~l~gf~  261 (286)
                      +.. |...    ...|+||.+..-   +.+-.=+..+....||+||.+++.    +-+   ..++.+-..++.-.-.+|+
T Consensus       133 A~~-P~~Y~~~Ve~VDviy~DVAQ---p~Qa~I~~~Na~~FLk~~G~~~i~iKArSIdvT~dp~~vf~~ev~kL~~~~f~  208 (231)
T COG1889         133 ARK-PEKYRHLVEKVDVIYQDVAQ---PNQAEILADNAEFFLKKGGYVVIAIKARSIDVTADPEEVFKDEVEKLEEGGFE  208 (231)
T ss_pred             cCC-cHHhhhhcccccEEEEecCC---chHHHHHHHHHHHhcccCCeEEEEEEeecccccCCHHHHHHHHHHHHHhcCce
Confidence            854 3322    368999976432   123333556778899999965553    211   1111111111111115799


Q ss_pred             EEEEec--CcccceeeeEEEee
Q 042119          262 VLSAVH--PNDDVINSVVLVRN  281 (286)
Q Consensus       262 ~~~~~~--P~~~vinsvi~~r~  281 (286)
                      ++.+.+  |.+. -...|+++.
T Consensus       209 i~e~~~LePye~-DH~~i~~~~  229 (231)
T COG1889         209 ILEVVDLEPYEK-DHALIVAKY  229 (231)
T ss_pred             eeEEeccCCccc-ceEEEEEee
Confidence            998877  5443 233455544

>PRK08507 prephenate dehydrogenase; Validated

Probab=95.82  E-value=0.044  Score=50.22  Aligned_cols=88  Identities=22%  Similarity=0.239  Sum_probs=55.3

Q ss_pred             EEEEeccCCChhhHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEccccchhhcCCCcceeehhhhc
Q 042119          133 KVAFVGSGPMPLTSIIMAKHHLTSTHFDNFDIDEAANDVARSIVASDAEFEGRMKFLTRDIMEVKEQLGEYDCIFLAALV  212 (286)
Q Consensus       133 ~VL~IG~G~lp~tai~lA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~g~l~~~i~f~~~D~~~~~~~l~~fD~V~~aalv  212 (286)
                      +|.+||+|.+|.+-..-.+......+|+++|++++..+.+++    .| ..+.    +.+..+    ..+.|+|+++.-.
T Consensus         2 ~I~iIG~G~mG~sla~~l~~~g~~~~v~~~d~~~~~~~~~~~----~g-~~~~----~~~~~~----~~~aD~Vilavp~   68 (275)
T PRK08507          2 KIGIIGLGLMGGSLGLALKEKGLISKVYGYDHNELHLKKALE----LG-LVDE----IVSFEE----LKKCDVIFLAIPV   68 (275)
T ss_pred             EEEEEccCHHHHHHHHHHHhcCCCCEEEEEcCCHHHHHHHHH----CC-CCcc----cCCHHH----HhcCCEEEEeCcH
Confidence            799999998886543322211122489999999998776543    56 2211    123222    2248999987532


Q ss_pred             cCChhHHHHHHHHHHhhccCCcEEEE
Q 042119          213 GMSKEEKLTILGHIRKYMKDGGILLV  238 (286)
Q Consensus       213 g~~~~~k~~vl~~l~~~l~pgg~lv~  238 (286)
                          ..-.+++.++.+ ++||.+|+-
T Consensus        69 ----~~~~~~~~~l~~-l~~~~iv~d   89 (275)
T PRK08507         69 ----DAIIEILPKLLD-IKENTTIID   89 (275)
T ss_pred             ----HHHHHHHHHHhc-cCCCCEEEE
Confidence                455678888888 888876653

>PF02056 Glyco_hydro_4: Family 4 glycosyl hydrolase; InterPro: IPR001088 O-Glycosyl hydrolases 3

Probab=95.81  E-value=0.063  Score=46.93  Aligned_cols=76  Identities=22%  Similarity=0.401  Sum_probs=48.8

Q ss_pred             EEEEeccCCChhhHHHHHh----hcCCCcEEEEEeCChHHHHH----HHHHHHhcCCCCCCeEEEEccccchhhcCCCcc
Q 042119          133 KVAFVGSGPMPLTSIIMAK----HHLTSTHFDNFDIDEAANDV----ARSIVASDAEFEGRMKFLTRDIMEVKEQLGEYD  204 (286)
Q Consensus       133 ~VL~IG~G~lp~tai~lA~----~~~~g~~V~~iDid~~ai~~----Ar~~~~~~g~l~~~i~f~~~D~~~~~~~l~~fD  204 (286)
                      ||.+||.|..-++-..+..    ..+++.+++-+|+|++.++.    |++++++.|   ..+++...  ++....+.+.|
T Consensus         1 KI~iIGaGS~~~~~~l~~~l~~~~~l~~~ei~L~Did~~RL~~~~~~~~~~~~~~~---~~~~v~~t--td~~eAl~gAD   75 (183)
T PF02056_consen    1 KITIIGAGSTYFPLLLLGDLLRTEELSGSEIVLMDIDEERLEIVERLARRMVEEAG---ADLKVEAT--TDRREALEGAD   75 (183)
T ss_dssp             EEEEETTTSCCHHHHHHHHHHCTTTSTEEEEEEE-SCHHHHHHHHHHHHHHHHHCT---TSSEEEEE--SSHHHHHTTES
T ss_pred             CEEEECCchHhhHHHHHHHHhcCccCCCcEEEEEcCCHHHHHHHHHHHHHHHHhcC---CCeEEEEe--CCHHHHhCCCC
Confidence            6899999986665444322    14678899999999998874    555666777   34555432  22344567899


Q ss_pred             eeehhhhcc
Q 042119          205 CIFLAALVG  213 (286)
Q Consensus       205 ~V~~aalvg  213 (286)
                      +|+...-+|
T Consensus        76 fVi~~irvG   84 (183)
T PF02056_consen   76 FVINQIRVG   84 (183)
T ss_dssp             EEEE---TT
T ss_pred             EEEEEeeec
Confidence            999887775

2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 4 GH4 from CAZY comprises enzymes with several known activities; 6-phospho-beta-glucosidase (3.2.1.86 from EC); 6-phospho-alpha-glucosidase (3.2.1.122 from EC); alpha-galactosidase (3.2.1.22 from EC). 6-phospho-alpha-glucosidase requires both NAD(H) and divalent metal (Mn2+, Fe2+, Co2+, or Ni2+) for activity [].; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 1U8X_X 1S6Y_A 3FEF_B 1VJT_A 1UP4_A 1UP6_C 1UP7_E 1OBB_A.

>PLN02256 arogenate dehydrogenase

Probab=95.81  E-value=0.061  Score=50.55  Aligned_cols=102  Identities=16%  Similarity=0.124  Sum_probs=61.5

Q ss_pred             hhhhhHHHHHHHHhcCCCCCCEEEEeccCCChhhHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEc
Q 042119          112 YVKLSKLEYTILSENGVVQPKKVAFVGSGPMPLTSIIMAKHHLTSTHFDNFDIDEAANDVARSIVASDAEFEGRMKFLTR  191 (286)
Q Consensus       112 y~~l~~~E~~~l~~~~~~~~~~VL~IG~G~lp~tai~lA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~g~l~~~i~f~~~  191 (286)
                      |+.-.+.|..      ...+.+|.+||+|.+|.+-....+  ..|.+|+++|.++. .    +.....| .    .+ ..
T Consensus        23 ~~~~~~~~~~------~~~~~kI~IIG~G~mG~slA~~L~--~~G~~V~~~d~~~~-~----~~a~~~g-v----~~-~~   83 (304)
T PLN02256         23 YESRLQEELE------KSRKLKIGIVGFGNFGQFLAKTFV--KQGHTVLATSRSDY-S----DIAAELG-V----SF-FR   83 (304)
T ss_pred             hHhHHhHhhc------cCCCCEEEEEeeCHHHHHHHHHHH--hCCCEEEEEECccH-H----HHHHHcC-C----ee-eC
Confidence            4555555533      246679999999988765333332  25679999999963 2    3333456 2    22 23


Q ss_pred             cccchhhcCCCcceeehhhhccCChhHHHHHHHHH-HhhccCCcEEEE
Q 042119          192 DIMEVKEQLGEYDCIFLAALVGMSKEEKLTILGHI-RKYMKDGGILLV  238 (286)
Q Consensus       192 D~~~~~~~l~~fD~V~~aalvg~~~~~k~~vl~~l-~~~l~pgg~lv~  238 (286)
                      |..++..  .+.|+|+++.-.    ..-.++++++ ...++||.+++-
T Consensus        84 ~~~e~~~--~~aDvVilavp~----~~~~~vl~~l~~~~l~~~~iviD  125 (304)
T PLN02256         84 DPDDFCE--EHPDVVLLCTSI----LSTEAVLRSLPLQRLKRSTLFVD  125 (304)
T ss_pred             CHHHHhh--CCCCEEEEecCH----HHHHHHHHhhhhhccCCCCEEEe
Confidence            4333221  358999987543    3445677787 567888875543

>cd05292 LDH_2 A subgroup of L-lactate dehydrogenases

Probab=95.79  E-value=0.085  Score=49.49  Aligned_cols=101  Identities=23%  Similarity=0.249  Sum_probs=64.2

Q ss_pred             CEEEEeccCCChhhHHHHHhhcCCC--cEEEEEeCChHHHH-HHHHHHHhcCCCCCCeEEEEccccchhhcCCCcceeeh
Q 042119          132 KKVAFVGSGPMPLTSIIMAKHHLTS--THFDNFDIDEAAND-VARSIVASDAEFEGRMKFLTRDIMEVKEQLGEYDCIFL  208 (286)
Q Consensus       132 ~~VL~IG~G~lp~tai~lA~~~~~g--~~V~~iDid~~ai~-~Ar~~~~~~g~l~~~i~f~~~D~~~~~~~l~~fD~V~~  208 (286)
                      ++|..||+|..|.+.......  .|  .+|+.+|++++..+ .|..+..... ......+..+|.    .++.+.|+|++
T Consensus         1 mkI~IIGaG~VG~~~a~~l~~--~g~~~ev~l~D~~~~~~~g~a~dl~~~~~-~~~~~~i~~~d~----~~l~~aDiVii   73 (308)
T cd05292           1 MKVAIVGAGFVGSTTAYALLL--RGLASEIVLVDINKAKAEGEAMDLAHGTP-FVKPVRIYAGDY----ADCKGADVVVI   73 (308)
T ss_pred             CEEEEECCCHHHHHHHHHHHH--cCCCCEEEEEECCchhhhhHHHHHHcccc-ccCCeEEeeCCH----HHhCCCCEEEE
Confidence            379999999988887665442  45  68999999988765 5666655443 223344444543    34678999998


Q ss_pred             hhhcc----CChh--------HHHHHHHHHHhhccCCcEEEEee
Q 042119          209 AALVG----MSKE--------EKLTILGHIRKYMKDGGILLVRS  240 (286)
Q Consensus       209 aalvg----~~~~--------~k~~vl~~l~~~l~pgg~lv~r~  240 (286)
                      ++-..    ++..        .-.++.+.+.+. .|.|.+++.+
T Consensus        74 ta~~~~~~~~~r~dl~~~n~~i~~~~~~~l~~~-~~~giiiv~t  116 (308)
T cd05292          74 TAGANQKPGETRLDLLKRNVAIFKEIIPQILKY-APDAILLVVT  116 (308)
T ss_pred             ccCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHH-CCCeEEEEec
Confidence            87652    2211        122445555553 5778887764

L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed predominantly of bacterial LDHs and a few fungal LDHs. Bacterial LDHs may be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.

>PTZ00075 Adenosylhomocysteinase; Provisional

Probab=95.77  E-value=0.016  Score=57.68  Aligned_cols=89  Identities=17%  Similarity=0.164  Sum_probs=63.0

Q ss_pred             CCCCEEEEeccCCChhhHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEccccchhhcCCCcceeeh
Q 042119          129 VQPKKVAFVGSGPMPLTSIIMAKHHLTSTHFDNFDIDEAANDVARSIVASDAEFEGRMKFLTRDIMEVKEQLGEYDCIFL  208 (286)
Q Consensus       129 ~~~~~VL~IG~G~lp~tai~lA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~g~l~~~i~f~~~D~~~~~~~l~~fD~V~~  208 (286)
                      -.+++|+.||.|.+|......++  ..|++|+.+|+||.....|..    .| .    ++  .+.   ...+...|+|+.
T Consensus       252 LaGKtVgVIG~G~IGr~vA~rL~--a~Ga~ViV~e~dp~~a~~A~~----~G-~----~~--~~l---eell~~ADIVI~  315 (476)
T PTZ00075        252 IAGKTVVVCGYGDVGKGCAQALR--GFGARVVVTEIDPICALQAAM----EG-Y----QV--VTL---EDVVETADIFVT  315 (476)
T ss_pred             cCCCEEEEECCCHHHHHHHHHHH--HCCCEEEEEeCCchhHHHHHh----cC-c----ee--ccH---HHHHhcCCEEEE
Confidence            57899999999999988888877  478999999999876543322    35 1    22  232   223457999987


Q ss_pred             hhhccCChhHHHHHH-HHHHhhccCCcEEEEee
Q 042119          209 AALVGMSKEEKLTIL-GHIRKYMKDGGILLVRS  240 (286)
Q Consensus       209 aalvg~~~~~k~~vl-~~l~~~l~pgg~lv~r~  240 (286)
                      +.  |    .+ .++ .+..+.||||++|+--.
T Consensus       316 at--G----t~-~iI~~e~~~~MKpGAiLINvG  341 (476)
T PTZ00075        316 AT--G----NK-DIITLEHMRRMKNNAIVGNIG  341 (476)
T ss_pred             CC--C----cc-cccCHHHHhccCCCcEEEEcC
Confidence            63  2    22 355 37788899999988753

>PRK12771 putative glutamate synthase (NADPH) small subunit; Provisional

Probab=95.75  E-value=0.023  Score=57.47  Aligned_cols=37  Identities=22%  Similarity=0.343  Sum_probs=31.7

Q ss_pred             CCCCCEEEEeccCCChhhHHHHHhhcCCCcEEEEEeCCh
Q 042119          128 VVQPKKVAFVGSGPMPLTSIIMAKHHLTSTHFDNFDIDE  166 (286)
Q Consensus       128 ~~~~~~VL~IG~G~lp~tai~lA~~~~~g~~V~~iDid~  166 (286)
                      +..+++|+.||+||.|+++...+++  .|.+|+.+|..+
T Consensus       134 ~~~g~~V~VIGaGpaGL~aA~~l~~--~G~~V~v~e~~~  170 (564)
T PRK12771        134 PDTGKRVAVIGGGPAGLSAAYHLRR--MGHAVTIFEAGP  170 (564)
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHHH--CCCeEEEEecCC
Confidence            4678999999999999999988873  689999999643

>PRK03562 glutathione-regulated potassium-efflux system protein KefC; Provisional

Probab=95.75  E-value=0.075  Score=54.67  Aligned_cols=96  Identities=14%  Similarity=0.069  Sum_probs=68.3

Q ss_pred             CCEEEEeccCCChhhHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEccccchh----hcCCCccee
Q 042119          131 PKKVAFVGSGPMPLTSIIMAKHHLTSTHFDNFDIDEAANDVARSIVASDAEFEGRMKFLTRDIMEVK----EQLGEYDCI  206 (286)
Q Consensus       131 ~~~VL~IG~G~lp~tai~lA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~g~l~~~i~f~~~D~~~~~----~~l~~fD~V  206 (286)
                      ..+|+.+|+|..|......-+  ..|..++.+|.|++.++.+++    .|     ...+.||+.+..    ...++.|.|
T Consensus       400 ~~~vII~G~Gr~G~~va~~L~--~~g~~vvvID~d~~~v~~~~~----~g-----~~v~~GDat~~~~L~~agi~~A~~v  468 (621)
T PRK03562        400 QPRVIIAGFGRFGQIVGRLLL--SSGVKMTVLDHDPDHIETLRK----FG-----MKVFYGDATRMDLLESAGAAKAEVL  468 (621)
T ss_pred             cCcEEEEecChHHHHHHHHHH--hCCCCEEEEECCHHHHHHHHh----cC-----CeEEEEeCCCHHHHHhcCCCcCCEE
Confidence            479999999999886544333  267899999999999998876    45     467889998742    234578887


Q ss_pred             ehhhhccCChhHHHHHHHHHHhhccCCcEEEEeec
Q 042119          207 FLAALVGMSKEEKLTILGHIRKYMKDGGILLVRSA  241 (286)
Q Consensus       207 ~~aalvg~~~~~k~~vl~~l~~~l~pgg~lv~r~~  241 (286)
                      +.+.-   + .+....+-...|.+.|+..+++|..
T Consensus       469 vv~~~---d-~~~n~~i~~~ar~~~p~~~iiaRa~  499 (621)
T PRK03562        469 INAID---D-PQTSLQLVELVKEHFPHLQIIARAR  499 (621)
T ss_pred             EEEeC---C-HHHHHHHHHHHHHhCCCCeEEEEEC
Confidence            75431   2 3333444456667789999999863

>TIGR00872 gnd_rel 6-phosphogluconate dehydrogenase (decarboxylating)

Probab=95.75  E-value=0.052  Score=50.51  Aligned_cols=90  Identities=16%  Similarity=0.257  Sum_probs=58.6

Q ss_pred             CEEEEeccCCChhhH-HHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEccccchhhcCCCcceeehhh
Q 042119          132 KKVAFVGSGPMPLTS-IIMAKHHLTSTHFDNFDIDEAANDVARSIVASDAEFEGRMKFLTRDIMEVKEQLGEYDCIFLAA  210 (286)
Q Consensus       132 ~~VL~IG~G~lp~ta-i~lA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~g~l~~~i~f~~~D~~~~~~~l~~fD~V~~aa  210 (286)
                      ++|.+||+|.+|.+. ..|++   .|.+|+++|++++.++..++    .|. . .    ..+..++...+...|+||++.
T Consensus         1 M~Ig~IGlG~mG~~la~~L~~---~g~~V~~~dr~~~~~~~l~~----~g~-~-~----~~s~~~~~~~~~~~dvIi~~v   67 (298)
T TIGR00872         1 MQLGLIGLGRMGANIVRRLAK---RGHDCVGYDHDQDAVKAMKE----DRT-T-G----VANLRELSQRLSAPRVVWVMV   67 (298)
T ss_pred             CEEEEEcchHHHHHHHHHHHH---CCCEEEEEECCHHHHHHHHH----cCC-c-c----cCCHHHHHhhcCCCCEEEEEc
Confidence            379999999888643 23333   68899999999987666554    341 1 1    133334333345679998763


Q ss_pred             hccCChhHHHHHHHHHHhhccCCcEEEE
Q 042119          211 LVGMSKEEKLTILGHIRKYMKDGGILLV  238 (286)
Q Consensus       211 lvg~~~~~k~~vl~~l~~~l~pgg~lv~  238 (286)
                      --    ..-..+++++...+++|.+++-
T Consensus        68 p~----~~~~~v~~~l~~~l~~g~ivid   91 (298)
T TIGR00872        68 PH----GIVDAVLEELAPTLEKGDIVID   91 (298)
T ss_pred             Cc----hHHHHHHHHHHhhCCCCCEEEE
Confidence            21    2345678899999988876654

This family resembles a larger family (gnd) of bacterial and eukaryotic 6-phosphogluconate dehydrogenases but differs from it by a deep split in a UPGMA similarity clustering tree and the lack of a central region of about 140 residues. Among complete genomes, it is found is found in Bacillus subtilis and Mycobacterium tuberculosis, both of which also contain gnd, and in Aquifex aeolicus. The protein from Methylobacillus flagellatus KT has been characterized as a decarboxylating 6-phosphogluconate dehydrogenase as part of an unusual formaldehyde oxidation cycle. In some sequenced organisms members of this family are the sole 6-phosphogluconate dehydrogenase present and are probably active in the pentose phosphate cycle.

>PTZ00082 L-lactate dehydrogenase; Provisional

Probab=95.74  E-value=0.066  Score=50.64  Aligned_cols=102  Identities=19%  Similarity=0.232  Sum_probs=61.8

Q ss_pred             CCEEEEeccCCChhhHHHHHhhcCCC-cEEEEEeCChHHHH-HHHHHHHhcCCCCCCeEEEE-ccccchhhcCCCcceee
Q 042119          131 PKKVAFVGSGPMPLTSIIMAKHHLTS-THFDNFDIDEAAND-VARSIVASDAEFEGRMKFLT-RDIMEVKEQLGEYDCIF  207 (286)
Q Consensus       131 ~~~VL~IG~G~lp~tai~lA~~~~~g-~~V~~iDid~~ai~-~Ar~~~~~~g~l~~~i~f~~-~D~~~~~~~l~~fD~V~  207 (286)
                      .++|..||+|.+|.+....+.  ..| ..++-+|++++... .+..+...........++.. +|.    .++.+.|+|+
T Consensus         6 ~~KI~IIGaG~vG~~ia~~la--~~gl~~i~LvDi~~~~~~~~~ld~~~~~~~~~~~~~I~~~~d~----~~l~~aDiVI   79 (321)
T PTZ00082          6 RRKISLIGSGNIGGVMAYLIV--LKNLGDVVLFDIVKNIPQGKALDISHSNVIAGSNSKVIGTNNY----EDIAGSDVVI   79 (321)
T ss_pred             CCEEEEECCCHHHHHHHHHHH--hCCCCeEEEEeCCCchhhHHHHHHHhhhhccCCCeEEEECCCH----HHhCCCCEEE
Confidence            479999999999887766544  355 47999999998531 12222222221122345553 553    3557899999


Q ss_pred             hhhhcc----C-------------ChhHHHHHHHHHHhhccCCcEEEEe
Q 042119          208 LAALVG----M-------------SKEEKLTILGHIRKYMKDGGILLVR  239 (286)
Q Consensus       208 ~aalvg----~-------------~~~~k~~vl~~l~~~l~pgg~lv~r  239 (286)
                      +.+.++    +             +.+-+.++.+.+.+.. |.|.+++-
T Consensus        80 ~tag~~~~~~~~~~~~~r~~~l~~n~~i~~~i~~~i~~~~-p~a~~iv~  127 (321)
T PTZ00082         80 VTAGLTKRPGKSDKEWNRDDLLPLNAKIMDEVAEGIKKYC-PNAFVIVI  127 (321)
T ss_pred             ECCCCCCCCCCCcCCCCHHHHHHHHHHHHHHHHHHHHHHC-CCeEEEEe
Confidence            866431    1             2233666777777665 66655553

>PF03141 Methyltransf_29: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR004159 Members of this family of hypothetical plant proteins are putative methyltransferases

Probab=95.72  E-value=0.0055  Score=60.79  Aligned_cols=103  Identities=15%  Similarity=0.227  Sum_probs=63.6

Q ss_pred             CCCEEEEeccCCChhhHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEccccchhhcCCCcceeehh
Q 042119          130 QPKKVAFVGSGPMPLTSIIMAKHHLTSTHFDNFDIDEAANDVARSIVASDAEFEGRMKFLTRDIMEVKEQLGEYDCIFLA  209 (286)
Q Consensus       130 ~~~~VL~IG~G~lp~tai~lA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~g~l~~~i~f~~~D~~~~~~~l~~fD~V~~a  209 (286)
                      .=+.+||||||...+.+.++.+. ..-..+.--|-.+..++.|-+.    | +-.-+... + ...++++...||+|..+
T Consensus       117 ~iR~~LDvGcG~aSF~a~l~~r~-V~t~s~a~~d~~~~qvqfaleR----G-vpa~~~~~-~-s~rLPfp~~~fDmvHcs  188 (506)
T PF03141_consen  117 GIRTALDVGCGVASFGAYLLERN-VTTMSFAPNDEHEAQVQFALER----G-VPAMIGVL-G-SQRLPFPSNAFDMVHCS  188 (506)
T ss_pred             ceEEEEeccceeehhHHHHhhCC-ceEEEcccccCCchhhhhhhhc----C-cchhhhhh-c-cccccCCccchhhhhcc
Confidence            34789999999877777666541 1112222235555566666542    3 11111110 1 13467776789999876


Q ss_pred             h-hccCChhHHHHHHHHHHhhccCCcEEEEeec
Q 042119          210 A-LVGMSKEEKLTILGHIRKYMKDGGILLVRSA  241 (286)
Q Consensus       210 a-lvg~~~~~k~~vl~~l~~~l~pgg~lv~r~~  241 (286)
                      . ++.|...+ .-+|-++-|+|+|||.++....
T Consensus       189 rc~i~W~~~~-g~~l~evdRvLRpGGyfv~S~p  220 (506)
T PF03141_consen  189 RCLIPWHPND-GFLLFEVDRVLRPGGYFVLSGP  220 (506)
T ss_pred             cccccchhcc-cceeehhhhhhccCceEEecCC
Confidence            4 45665433 4588899999999999999763

; GO: 0008168 methyltransferase activity

>cd08245 CAD Cinnamyl alcohol dehydrogenases (CAD) and related proteins

Probab=95.65  E-value=0.089  Score=48.53  Aligned_cols=99  Identities=13%  Similarity=0.115  Sum_probs=66.2

Q ss_pred             cCCCCCCEEEEeccCCChhhHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEccccchhhcCCCcce
Q 042119          126 NGVVQPKKVAFVGSGPMPLTSIIMAKHHLTSTHFDNFDIDEAANDVARSIVASDAEFEGRMKFLTRDIMEVKEQLGEYDC  205 (286)
Q Consensus       126 ~~~~~~~~VL~IG~G~lp~tai~lA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~g~l~~~i~f~~~D~~~~~~~l~~fD~  205 (286)
                      ....++.+||..|+|.+|..++.+|++  .|.+|++++.+++..+.+++    .| ...-+.....+...  ...+.+|+
T Consensus       158 ~~~~~~~~vlI~g~g~iG~~~~~~a~~--~G~~v~~~~~~~~~~~~~~~----~g-~~~~~~~~~~~~~~--~~~~~~d~  228 (330)
T cd08245         158 AGPRPGERVAVLGIGGLGHLAVQYARA--MGFETVAITRSPDKRELARK----LG-ADEVVDSGAELDEQ--AAAGGADV  228 (330)
T ss_pred             hCCCCCCEEEEECCCHHHHHHHHHHHH--CCCEEEEEeCCHHHHHHHHH----hC-CcEEeccCCcchHH--hccCCCCE
Confidence            345788999999999999999999984  78999999999988777644    34 11111111111111  11136999


Q ss_pred             eehhhhccCChhHHHHHHHHHHhhccCCcEEEEee
Q 042119          206 IFLAALVGMSKEEKLTILGHIRKYMKDGGILLVRS  240 (286)
Q Consensus       206 V~~aalvg~~~~~k~~vl~~l~~~l~pgg~lv~r~  240 (286)
                      |+.+..      . ...+..+.+.|+++|.++.-.
T Consensus       229 vi~~~~------~-~~~~~~~~~~l~~~G~~i~~~  256 (330)
T cd08245         229 ILVTVV------S-GAAAEAALGGLRRGGRIVLVG  256 (330)
T ss_pred             EEECCC------c-HHHHHHHHHhcccCCEEEEEC
Confidence            885422      1 135677889999999988754

Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an

>cd05285 sorbitol_DH Sorbitol dehydrogenase

Probab=95.65  E-value=0.064  Score=50.05  Aligned_cols=102  Identities=21%  Similarity=0.237  Sum_probs=68.2

Q ss_pred             hcCCCCCCEEEEeccCCChhhHHHHHhhcCCCcE-EEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEcc----ccchhhc
Q 042119          125 ENGVVQPKKVAFVGSGPMPLTSIIMAKHHLTSTH-FDNFDIDEAANDVARSIVASDAEFEGRMKFLTRD----IMEVKEQ  199 (286)
Q Consensus       125 ~~~~~~~~~VL~IG~G~lp~tai~lA~~~~~g~~-V~~iDid~~ai~~Ar~~~~~~g~l~~~i~f~~~D----~~~~~~~  199 (286)
                      .....++.+|+..|+|.+|..++.+|+.  .|++ |+.++.+++..+.+++    +| ...-+....-+    ..++...
T Consensus       157 ~~~~~~g~~vlI~g~g~vG~~a~~lak~--~G~~~v~~~~~~~~~~~~~~~----~g-~~~vi~~~~~~~~~~~~~~~~~  229 (343)
T cd05285         157 RAGVRPGDTVLVFGAGPIGLLTAAVAKA--FGATKVVVTDIDPSRLEFAKE----LG-ATHTVNVRTEDTPESAEKIAEL  229 (343)
T ss_pred             hcCCCCCCEEEEECCCHHHHHHHHHHHH--cCCcEEEEECCCHHHHHHHHH----cC-CcEEeccccccchhHHHHHHHH
Confidence            3456789999999999999999999994  7787 9999999888777755    35 21111211111    1111111


Q ss_pred             C--CCcceeehhhhccCChhHHHHHHHHHHhhccCCcEEEEee
Q 042119          200 L--GEYDCIFLAALVGMSKEEKLTILGHIRKYMKDGGILLVRS  240 (286)
Q Consensus       200 l--~~fD~V~~aalvg~~~~~k~~vl~~l~~~l~pgg~lv~r~  240 (286)
                      .  .+||+|+.+...     .  ..+....+.++++|+++.-.
T Consensus       230 ~~~~~~d~vld~~g~-----~--~~~~~~~~~l~~~G~~v~~g  265 (343)
T cd05285         230 LGGKGPDVVIECTGA-----E--SCIQTAIYATRPGGTVVLVG  265 (343)
T ss_pred             hCCCCCCEEEECCCC-----H--HHHHHHHHHhhcCCEEEEEc
Confidence            2  359999865321     1  26778899999999988653

Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit. Aldose reductase catalyzes the NADP(H)-dependent conversion of glucose to sorbital, and SDH uses NAD(H) in the conversion of sorbitol to fructose. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit.

>cd05293 LDH_1 A subgroup of L-lactate dehydrogenases

Probab=95.64  E-value=0.17  Score=47.79  Aligned_cols=105  Identities=23%  Similarity=0.242  Sum_probs=66.8

Q ss_pred             CCCEEEEeccCCChhhHHHHHhhcCCCcEEEEEeCChH-HHHHHHHHHHhcCCCCCCeEEEE-ccccchhhcCCCcceee
Q 042119          130 QPKKVAFVGSGPMPLTSIIMAKHHLTSTHFDNFDIDEA-ANDVARSIVASDAEFEGRMKFLT-RDIMEVKEQLGEYDCIF  207 (286)
Q Consensus       130 ~~~~VL~IG~G~lp~tai~lA~~~~~g~~V~~iDid~~-ai~~Ar~~~~~~g~l~~~i~f~~-~D~~~~~~~l~~fD~V~  207 (286)
                      +..+|..||+|..|.+............+++-+|++++ +-..+..+-.... +....++.. +|.    .++.+.|+|+
T Consensus         2 ~~~Ki~IiGaG~VG~~~a~~l~~~~~~~el~LiD~~~~~~~g~a~Dl~~~~~-~~~~~~v~~~~dy----~~~~~adivv   76 (312)
T cd05293           2 PRNKVTVVGVGQVGMACAISILAKGLADELVLVDVVEDKLKGEAMDLQHGSA-FLKNPKIEADKDY----SVTANSKVVI   76 (312)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCccHHHHHHHHHHHhhc-cCCCCEEEECCCH----HHhCCCCEEE
Confidence            45699999999999887765543334567999999876 4466666666654 222224443 553    2457899998


Q ss_pred             hhhhc----cCChhH--------HHHHHHHHHhhccCCcEEEEee
Q 042119          208 LAALV----GMSKEE--------KLTILGHIRKYMKDGGILLVRS  240 (286)
Q Consensus       208 ~aalv----g~~~~~--------k~~vl~~l~~~l~pgg~lv~r~  240 (286)
                      +.+-.    ||+..+        -.++.+.+.+. .|.|.+++-+
T Consensus        77 itaG~~~k~g~~R~dll~~N~~i~~~~~~~i~~~-~p~~~vivvs  120 (312)
T cd05293          77 VTAGARQNEGESRLDLVQRNVDIFKGIIPKLVKY-SPNAILLVVS  120 (312)
T ss_pred             ECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHh-CCCcEEEEcc
Confidence            86543    444322        23344555555 6788877754

L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed of eukaryotic LDHs. Vertebrate LDHs are non-allosteric. This is in contrast to some bacterial LDHs that are activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.

>PRK08655 prephenate dehydrogenase; Provisional

Probab=95.62  E-value=0.065  Score=52.80  Aligned_cols=91  Identities=11%  Similarity=0.186  Sum_probs=59.3

Q ss_pred             CEEEEec-cCCChhhHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEccccchhhcCCCcceeehhh
Q 042119          132 KKVAFVG-SGPMPLTSIIMAKHHLTSTHFDNFDIDEAANDVARSIVASDAEFEGRMKFLTRDIMEVKEQLGEYDCIFLAA  210 (286)
Q Consensus       132 ~~VL~IG-~G~lp~tai~lA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~g~l~~~i~f~~~D~~~~~~~l~~fD~V~~aa  210 (286)
                      ++|++|| +|.+|.+.....+  ..|.+|+++|.+++..   .+.....| .    .+ ..|.   .......|+|+++.
T Consensus         1 MkI~IIGG~G~mG~slA~~L~--~~G~~V~v~~r~~~~~---~~~a~~~g-v----~~-~~~~---~e~~~~aDvVIlav   66 (437)
T PRK08655          1 MKISIIGGTGGLGKWFARFLK--EKGFEVIVTGRDPKKG---KEVAKELG-V----EY-ANDN---IDAAKDADIVIISV   66 (437)
T ss_pred             CEEEEEecCCHHHHHHHHHHH--HCCCEEEEEECChHHH---HHHHHHcC-C----ee-ccCH---HHHhccCCEEEEec
Confidence            4799998 7888765544443  2678999999998764   22333445 2    22 2232   22345789999875


Q ss_pred             hccCChhHHHHHHHHHHhhccCCcEEEEee
Q 042119          211 LVGMSKEEKLTILGHIRKYMKDGGILLVRS  240 (286)
Q Consensus       211 lvg~~~~~k~~vl~~l~~~l~pgg~lv~r~  240 (286)
                      -+    ..-..+++.+.+.++||.+++--+
T Consensus        67 p~----~~~~~vl~~l~~~l~~~~iViDvs   92 (437)
T PRK08655         67 PI----NVTEDVIKEVAPHVKEGSLLMDVT   92 (437)
T ss_pred             CH----HHHHHHHHHHHhhCCCCCEEEEcc
Confidence            43    344578899999999988666543

>KOG2940 consensus Predicted methyltransferase [General function prediction only]

Probab=95.62  E-value=0.018  Score=52.26  Aligned_cols=103  Identities=8%  Similarity=0.017  Sum_probs=73.2

Q ss_pred             CCCCEEEEeccCCChhhHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEccccchhhcCCCcceeeh
Q 042119          129 VQPKKVAFVGSGPMPLTSIIMAKHHLTSTHFDNFDIDEAANDVARSIVASDAEFEGRMKFLTRDIMEVKEQLGEYDCIFL  208 (286)
Q Consensus       129 ~~~~~VL~IG~G~lp~tai~lA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~g~l~~~i~f~~~D~~~~~~~l~~fD~V~~  208 (286)
                      +.-..+++|||| +|.-+-.+-.+  .=.+++-.|.|-.|++-|+.. +..   +-.+.+.++|-..+++..+++|+|+.
T Consensus        71 k~fp~a~diGcs-~G~v~rhl~~e--~vekli~~DtS~~M~~s~~~~-qdp---~i~~~~~v~DEE~Ldf~ens~DLiis  143 (325)
T KOG2940|consen   71 KSFPTAFDIGCS-LGAVKRHLRGE--GVEKLIMMDTSYDMIKSCRDA-QDP---SIETSYFVGDEEFLDFKENSVDLIIS  143 (325)
T ss_pred             hhCcceeecccc-hhhhhHHHHhc--chhheeeeecchHHHHHhhcc-CCC---ceEEEEEecchhcccccccchhhhhh
Confidence            344689999999 45544444331  346789999999999998874 222   34678899997777776678999986


Q ss_pred             hhhccCChhHHHHHHHHHHhhccCCcEEEEe
Q 042119          209 AALVGMSKEEKLTILGHIRKYMKDGGILLVR  239 (286)
Q Consensus       209 aalvg~~~~~k~~vl~~l~~~l~pgg~lv~r  239 (286)
                      +--.+|. .+--..+-+++..+||+|.++..
T Consensus       144 SlslHW~-NdLPg~m~~ck~~lKPDg~Fias  173 (325)
T KOG2940|consen  144 SLSLHWT-NDLPGSMIQCKLALKPDGLFIAS  173 (325)
T ss_pred             hhhhhhh-ccCchHHHHHHHhcCCCccchhH
Confidence            5433442 23335777899999999999873

>PRK12921 2-dehydropantoate 2-reductase; Provisional

Probab=95.61  E-value=0.039  Score=50.81  Aligned_cols=94  Identities=13%  Similarity=0.157  Sum_probs=55.1

Q ss_pred             CEEEEeccCCChhhHHH-HHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCC----CCCCeEEEEccc-cchhhcCCCcce
Q 042119          132 KKVAFVGSGPMPLTSII-MAKHHLTSTHFDNFDIDEAANDVARSIVASDAE----FEGRMKFLTRDI-MEVKEQLGEYDC  205 (286)
Q Consensus       132 ~~VL~IG~G~lp~tai~-lA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~g~----l~~~i~f~~~D~-~~~~~~l~~fD~  205 (286)
                      ++|+.||+|.+|..... |++   .|..|+.++. ++.++..++    .|.    ...+..+ .... .+.......+|+
T Consensus         1 mkI~IiG~G~iG~~~a~~L~~---~g~~V~~~~r-~~~~~~~~~----~g~~~~~~~~~~~~-~~~~~~~~~~~~~~~d~   71 (305)
T PRK12921          1 MRIAVVGAGAVGGTFGGRLLE---AGRDVTFLVR-PKRAKALRE----RGLVIRSDHGDAVV-PGPVITDPEELTGPFDL   71 (305)
T ss_pred             CeEEEECCCHHHHHHHHHHHH---CCCceEEEec-HHHHHHHHh----CCeEEEeCCCeEEe-cceeecCHHHccCCCCE
Confidence            47999999998875433 444   5789999999 666554332    331    0001111 0111 111112257999


Q ss_pred             eehhhhccCChhHHHHHHHHHHhhccCCcEEEE
Q 042119          206 IFLAALVGMSKEEKLTILGHIRKYMKDGGILLV  238 (286)
Q Consensus       206 V~~aalvg~~~~~k~~vl~~l~~~l~pgg~lv~  238 (286)
                      ||++.--    ..-..+++.+.+.+.++..++.
T Consensus        72 vilavk~----~~~~~~~~~l~~~~~~~~~ii~  100 (305)
T PRK12921         72 VILAVKA----YQLDAAIPDLKPLVGEDTVIIP  100 (305)
T ss_pred             EEEEecc----cCHHHHHHHHHhhcCCCCEEEE
Confidence            9987421    2345688888888888776553

>PF13241 NAD_binding_7: Putative NAD(P)-binding; PDB: 3DFZ_B 1PJT_A 1PJS_A 1PJQ_A 1KYQ_B

Probab=95.57  E-value=0.072  Score=41.76  Aligned_cols=97  Identities=19%  Similarity=0.305  Sum_probs=56.7

Q ss_pred             CCCCEEEEeccCCChhhHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEccccchhhcCCCcceeeh
Q 042119          129 VQPKKVAFVGSGPMPLTSIIMAKHHLTSTHFDNFDIDEAANDVARSIVASDAEFEGRMKFLTRDIMEVKEQLGEYDCIFL  208 (286)
Q Consensus       129 ~~~~~VL~IG~G~lp~tai~lA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~g~l~~~i~f~~~D~~~~~~~l~~fD~V~~  208 (286)
                      -.+++||.||+|+.+..-+...  ...|++|+.+..+.+..+         +    ++++...+.   ..++.++|+||.
T Consensus         5 l~~~~vlVvGgG~va~~k~~~L--l~~gA~v~vis~~~~~~~---------~----~i~~~~~~~---~~~l~~~~lV~~   66 (103)
T PF13241_consen    5 LKGKRVLVVGGGPVAARKARLL--LEAGAKVTVISPEIEFSE---------G----LIQLIRREF---EEDLDGADLVFA   66 (103)
T ss_dssp             -TT-EEEEEEESHHHHHHHHHH--CCCTBEEEEEESSEHHHH---------T----SCEEEESS----GGGCTTESEEEE
T ss_pred             cCCCEEEEECCCHHHHHHHHHH--HhCCCEEEEECCchhhhh---------h----HHHHHhhhH---HHHHhhheEEEe
Confidence            3578999999997666544443  357899999999971111         3    577775554   356778999996


Q ss_pred             hhhccCChhHHHHHHHHHHhhccCCcEEEEeec-Ccceeeecc
Q 042119          209 AALVGMSKEEKLTILGHIRKYMKDGGILLVRSA-KGARAFLYP  250 (286)
Q Consensus       209 aalvg~~~~~k~~vl~~l~~~l~pgg~lv~r~~-~g~r~~lyp  250 (286)
                      +.-   +.    ++-+.+++..+.-|+++.... .....|..|
T Consensus        67 at~---d~----~~n~~i~~~a~~~~i~vn~~D~p~~~dF~~P  102 (103)
T PF13241_consen   67 ATD---DP----ELNEAIYADARARGILVNVVDDPELCDFIFP  102 (103)
T ss_dssp             -SS----H----HHHHHHHHHHHHTTSEEEETT-CCCCSEE--
T ss_pred             cCC---CH----HHHHHHHHHHhhCCEEEEECCCcCCCeEEcC
Confidence            632   11    233455555555566666543 233346555

>PTZ00142 6-phosphogluconate dehydrogenase; Provisional

Probab=95.56  E-value=0.078  Score=52.82  Aligned_cols=97  Identities=11%  Similarity=0.146  Sum_probs=65.0

Q ss_pred             CEEEEeccCCChhhHHH-HHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEccccchhhcCCCcceeehhh
Q 042119          132 KKVAFVGSGPMPLTSII-MAKHHLTSTHFDNFDIDEAANDVARSIVASDAEFEGRMKFLTRDIMEVKEQLGEYDCIFLAA  210 (286)
Q Consensus       132 ~~VL~IG~G~lp~tai~-lA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~g~l~~~i~f~~~D~~~~~~~l~~fD~V~~aa  210 (286)
                      .+|.+||.|.+|..... |++   .|.+|+++|++++.++...+.....|   ..+. .+.+..++...+...|+||+..
T Consensus         2 ~~IgvIGLG~MG~~lA~nL~~---~G~~V~v~dr~~~~~~~l~~~~~~~g---~~i~-~~~s~~e~v~~l~~~d~Iil~v   74 (470)
T PTZ00142          2 SDIGLIGLAVMGQNLALNIAS---RGFKISVYNRTYEKTEEFVKKAKEGN---TRVK-GYHTLEELVNSLKKPRKVILLI   74 (470)
T ss_pred             CEEEEEeEhHHHHHHHHHHHH---CCCeEEEEeCCHHHHHHHHHhhhhcC---Ccce-ecCCHHHHHhcCCCCCEEEEEe
Confidence            47999999988865322 233   78899999999999887665433334   1222 2345555555555689888763


Q ss_pred             hccCChhHHHHHHHHHHhhccCCcEEEE
Q 042119          211 LVGMSKEEKLTILGHIRKYMKDGGILLV  238 (286)
Q Consensus       211 lvg~~~~~k~~vl~~l~~~l~pgg~lv~  238 (286)
                      .-   .+.=..+++.+.+.|+||.+++-
T Consensus        75 ~~---~~~v~~vi~~l~~~L~~g~iIID   99 (470)
T PTZ00142         75 KA---GEAVDETIDNLLPLLEKGDIIID   99 (470)
T ss_pred             CC---hHHHHHHHHHHHhhCCCCCEEEE
Confidence            32   23445788999999998877655

>PRK15076 alpha-galactosidase; Provisional

Probab=95.51  E-value=0.014  Score=57.49  Aligned_cols=79  Identities=23%  Similarity=0.314  Sum_probs=53.0

Q ss_pred             CEEEEeccCCChhhHHH---HH-hhcCCCcEEEEEeCChHHHHHHHHHHHhc-CCCCCCeEEE-EccccchhhcCCCcce
Q 042119          132 KKVAFVGSGPMPLTSII---MA-KHHLTSTHFDNFDIDEAANDVARSIVASD-AEFEGRMKFL-TRDIMEVKEQLGEYDC  205 (286)
Q Consensus       132 ~~VL~IG~G~lp~tai~---lA-~~~~~g~~V~~iDid~~ai~~Ar~~~~~~-g~l~~~i~f~-~~D~~~~~~~l~~fD~  205 (286)
                      .+|..||+|.+|++...   ++ ...+++.+|+-+|+|++.++.+.++++.. ......+++. +.|.   ..++.+.|+
T Consensus         2 ~KIaIIGaGsvg~~~~~~~~i~~~~~l~~~evvLvDid~er~~~~~~l~~~~~~~~~~~~~i~~ttD~---~eal~dADf   78 (431)
T PRK15076          2 PKITFIGAGSTVFTKNLLGDILSVPALRDAEIALMDIDPERLEESEIVARKLAESLGASAKITATTDR---REALQGADY   78 (431)
T ss_pred             cEEEEECCCHHHhHHHHHHHHhhCccCCCCEEEEECCCHHHHHHHHHHHHHHHHhcCCCeEEEEECCH---HHHhCCCCE
Confidence            48999999987876544   22 11356779999999999988766665432 1011235555 4553   345567899


Q ss_pred             eehhhhcc
Q 042119          206 IFLAALVG  213 (286)
Q Consensus       206 V~~aalvg  213 (286)
                      |+.++-+|
T Consensus        79 Vv~ti~vg   86 (431)
T PRK15076         79 VINAIQVG   86 (431)
T ss_pred             EeEeeeeC
Confidence            99988875

>PRK08229 2-dehydropantoate 2-reductase; Provisional

Probab=95.49  E-value=0.039  Score=51.85  Aligned_cols=95  Identities=6%  Similarity=0.096  Sum_probs=55.5

Q ss_pred             CEEEEeccCCChhhHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCC------CCeEEEEcc--ccchhhcCCCc
Q 042119          132 KKVAFVGSGPMPLTSIIMAKHHLTSTHFDNFDIDEAANDVARSIVASDAEFE------GRMKFLTRD--IMEVKEQLGEY  203 (286)
Q Consensus       132 ~~VL~IG~G~lp~tai~lA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~g~l~------~~i~f~~~D--~~~~~~~l~~f  203 (286)
                      ++|.+||+|.+|..-.....  ..|.+|+.+|.++.. +.    +++.| +.      .+.......  ..+.......+
T Consensus         3 mkI~IiG~G~mG~~~A~~L~--~~G~~V~~~~r~~~~-~~----~~~~g-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   74 (341)
T PRK08229          3 ARICVLGAGSIGCYLGGRLA--AAGADVTLIGRARIG-DE----LRAHG-LTLTDYRGRDVRVPPSAIAFSTDPAALATA   74 (341)
T ss_pred             ceEEEECCCHHHHHHHHHHH--hcCCcEEEEecHHHH-HH----HHhcC-ceeecCCCcceecccceeEeccChhhccCC
Confidence            57999999998865444333  268899999997532 22    23333 11      011100000  00111234579


Q ss_pred             ceeehhhhccCChhHHHHHHHHHHhhccCCcEEEE
Q 042119          204 DCIFLAALVGMSKEEKLTILGHIRKYMKDGGILLV  238 (286)
Q Consensus       204 D~V~~aalvg~~~~~k~~vl~~l~~~l~pgg~lv~  238 (286)
                      |+|+++.-    ..+..++++.+.+.++++.+++.
T Consensus        75 D~vil~vk----~~~~~~~~~~l~~~~~~~~iii~  105 (341)
T PRK08229         75 DLVLVTVK----SAATADAAAALAGHARPGAVVVS  105 (341)
T ss_pred             CEEEEEec----CcchHHHHHHHHhhCCCCCEEEE
Confidence            99997642    24556788999999888876553

>cd08286 FDH_like_ADH2 formaldehyde dehydrogenase (FDH)-like

Probab=95.47  E-value=0.075  Score=49.48  Aligned_cols=100  Identities=23%  Similarity=0.283  Sum_probs=68.1

Q ss_pred             CCCCCCEEEEeccCCChhhHHHHHhhcCCC-cEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEccccc-hhh--cCCC
Q 042119          127 GVVQPKKVAFVGSGPMPLTSIIMAKHHLTS-THFDNFDIDEAANDVARSIVASDAEFEGRMKFLTRDIME-VKE--QLGE  202 (286)
Q Consensus       127 ~~~~~~~VL~IG~G~lp~tai~lA~~~~~g-~~V~~iDid~~ai~~Ar~~~~~~g~l~~~i~f~~~D~~~-~~~--~l~~  202 (286)
                      ...++.+||..|+|++|..++.+|++  .| .+|+++|.+++..+.+++    +| ...-+.....+... +..  ....
T Consensus       163 ~~~~g~~vlI~g~g~~g~~~~~~a~~--~G~~~v~~~~~~~~~~~~~~~----~g-~~~~v~~~~~~~~~~i~~~~~~~~  235 (345)
T cd08286         163 KVKPGDTVAIVGAGPVGLAALLTAQL--YSPSKIIMVDLDDNRLEVAKK----LG-ATHTVNSAKGDAIEQVLELTDGRG  235 (345)
T ss_pred             CCCCCCEEEEECCCHHHHHHHHHHHH--cCCCeEEEEcCCHHHHHHHHH----hC-CCceeccccccHHHHHHHHhCCCC
Confidence            45788999999999999999999994  67 789999999988776664    45 32223333222111 111  1136


Q ss_pred             cceeehhhhccCChhHHHHHHHHHHhhccCCcEEEEee
Q 042119          203 YDCIFLAALVGMSKEEKLTILGHIRKYMKDGGILLVRS  240 (286)
Q Consensus       203 fD~V~~aalvg~~~~~k~~vl~~l~~~l~pgg~lv~r~  240 (286)
                      +|+|+-+.  +    .+ ..++.+.+.++++|.++.-.
T Consensus       236 ~d~vld~~--g----~~-~~~~~~~~~l~~~g~~v~~g  266 (345)
T cd08286         236 VDVVIEAV--G----IP-ATFELCQELVAPGGHIANVG  266 (345)
T ss_pred             CCEEEECC--C----CH-HHHHHHHHhccCCcEEEEec
Confidence            99998543  2    11 25778889999999998654

This group is related to formaldehyde dehydrogenase (FDH), which is a member of the zinc-dependent/medium chain alcohol dehydrogenase family. This family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Another member is identified as a dihydroxyacetone reductase. Like the zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), tetrameric FDHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains and a structural zinc in a lobe of the catalytic domain. Unlike ADH, where NAD(P)(H) acts as a cofactor, NADH in FDH is a tightly bound redox cofactor (similar to nicotinamide proteins). The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (

>COG1189 Predicted rRNA methylase [Translation, ribosomal structure and biogenesis]

Probab=95.45  E-value=0.1  Score=47.35  Aligned_cols=101  Identities=19%  Similarity=0.231  Sum_probs=70.0

Q ss_pred             hcCC-CCCCEEEEeccCCChhhHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEccccchhh-cCC-
Q 042119          125 ENGV-VQPKKVAFVGSGPMPLTSIIMAKHHLTSTHFDNFDIDEAANDVARSIVASDAEFEGRMKFLTRDIMEVKE-QLG-  201 (286)
Q Consensus       125 ~~~~-~~~~~VL~IG~G~lp~tai~lA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~g~l~~~i~f~~~D~~~~~~-~l~-  201 (286)
                      .+.+ .+++.+||||+-++|+|-.++-+   .-.+|.++|..-..+.+.-+.   ..   .-+.+...|+..+.. ++. 
T Consensus        73 ~F~l~~k~kv~LDiGsSTGGFTd~lLq~---gAk~VyavDVG~~Ql~~kLR~---d~---rV~~~E~tN~r~l~~~~~~~  143 (245)
T COG1189          73 EFELDVKGKVVLDIGSSTGGFTDVLLQR---GAKHVYAVDVGYGQLHWKLRN---DP---RVIVLERTNVRYLTPEDFTE  143 (245)
T ss_pred             hcCcCCCCCEEEEecCCCccHHHHHHHc---CCcEEEEEEccCCccCHhHhc---CC---cEEEEecCChhhCCHHHccc
Confidence            4443 78899999999999999887765   557899999998776665443   21   223555556654433 222 


Q ss_pred             Ccceeehh-hhccCChhHHHHHHHHHHhhccCCcEEEEe
Q 042119          202 EYDCIFLA-ALVGMSKEEKLTILGHIRKYMKDGGILLVR  239 (286)
Q Consensus       202 ~fD~V~~a-alvg~~~~~k~~vl~~l~~~l~pgg~lv~r  239 (286)
                      ..|++..+ +++     .-..+|..+...++||+-++..
T Consensus       144 ~~d~~v~DvSFI-----SL~~iLp~l~~l~~~~~~~v~L  177 (245)
T COG1189         144 KPDLIVIDVSFI-----SLKLILPALLLLLKDGGDLVLL  177 (245)
T ss_pred             CCCeEEEEeehh-----hHHHHHHHHHHhcCCCceEEEE
Confidence            46776654 444     3346999999999999988774

>PRK00094 gpsA NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Validated

Probab=95.45  E-value=0.067  Score=49.65  Aligned_cols=98  Identities=14%  Similarity=0.203  Sum_probs=59.2

Q ss_pred             CEEEEeccCCChhhHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHh-c--CC--CCCCeEEEEccccchhhcCCCccee
Q 042119          132 KKVAFVGSGPMPLTSIIMAKHHLTSTHFDNFDIDEAANDVARSIVAS-D--AE--FEGRMKFLTRDIMEVKEQLGEYDCI  206 (286)
Q Consensus       132 ~~VL~IG~G~lp~tai~lA~~~~~g~~V~~iDid~~ai~~Ar~~~~~-~--g~--l~~~i~f~~~D~~~~~~~l~~fD~V  206 (286)
                      ++|.+||+|.+|........  ..|.+|+.+|.+++.++..++.-.. .  +.  +..++++ ..|..   ....+.|+|
T Consensus         2 mkI~iiG~G~mG~~~a~~L~--~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~---~~~~~~D~v   75 (325)
T PRK00094          2 MKIAVLGAGSWGTALAIVLA--RNGHDVTLWARDPEQAAEINADRENPRYLPGIKLPDNLRA-TTDLA---EALADADLI   75 (325)
T ss_pred             CEEEEECCCHHHHHHHHHHH--hCCCEEEEEECCHHHHHHHHHcCcccccCCCCcCCCCeEE-eCCHH---HHHhCCCEE
Confidence            37999999988765433222  2678999999999877655442100 0  00  0012222 22322   223478999


Q ss_pred             ehhhhccCChhHHHHHHHHHHhhccCCcEEEEe
Q 042119          207 FLAALVGMSKEEKLTILGHIRKYMKDGGILLVR  239 (286)
Q Consensus       207 ~~aalvg~~~~~k~~vl~~l~~~l~pgg~lv~r  239 (286)
                      +++.-    ......+++.+.+.++||.+++.-
T Consensus        76 i~~v~----~~~~~~v~~~l~~~~~~~~~vi~~  104 (325)
T PRK00094         76 LVAVP----SQALREVLKQLKPLLPPDAPIVWA  104 (325)
T ss_pred             EEeCC----HHHHHHHHHHHHhhcCCCCEEEEE
Confidence            97643    245677888898888888766544

>cd05279 Zn_ADH1 Liver alcohol dehydrogenase and related zinc-dependent alcohol dehydrogenases

Probab=95.45  E-value=0.063  Score=50.89  Aligned_cols=101  Identities=21%  Similarity=0.227  Sum_probs=67.4

Q ss_pred             cCCCCCCEEEEeccCCChhhHHHHHhhcCCCcE-EEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEc--cccc-hhh-cC
Q 042119          126 NGVVQPKKVAFVGSGPMPLTSIIMAKHHLTSTH-FDNFDIDEAANDVARSIVASDAEFEGRMKFLTR--DIME-VKE-QL  200 (286)
Q Consensus       126 ~~~~~~~~VL~IG~G~lp~tai~lA~~~~~g~~-V~~iDid~~ai~~Ar~~~~~~g~l~~~i~f~~~--D~~~-~~~-~l  200 (286)
                      ..+.++.+||..|+|++|..++.+|+.  .|++ |++++.+++..+.+++    +| ...-+.....  +..+ +.. .-
T Consensus       179 ~~~~~g~~vlI~g~g~vG~~a~~~a~~--~G~~~v~~~~~~~~~~~~~~~----~g-~~~~v~~~~~~~~~~~~l~~~~~  251 (365)
T cd05279         179 AKVTPGSTCAVFGLGGVGLSVIMGCKA--AGASRIIAVDINKDKFEKAKQ----LG-ATECINPRDQDKPIVEVLTEMTD  251 (365)
T ss_pred             cCCCCCCEEEEECCCHHHHHHHHHHHH--cCCCeEEEEeCCHHHHHHHHH----hC-CCeecccccccchHHHHHHHHhC
Confidence            346788999999999999999999994  5774 8999999998777755    45 2222222222  2111 111 01


Q ss_pred             CCcceeehhhhccCChhHHHHHHHHHHhhcc-CCcEEEEee
Q 042119          201 GEYDCIFLAALVGMSKEEKLTILGHIRKYMK-DGGILLVRS  240 (286)
Q Consensus       201 ~~fD~V~~aalvg~~~~~k~~vl~~l~~~l~-pgg~lv~r~  240 (286)
                      +.+|+|+-+.  |    . ...+....+.++ ++|+++.-.
T Consensus       252 ~~~d~vid~~--g----~-~~~~~~~~~~l~~~~G~~v~~g  285 (365)
T cd05279         252 GGVDYAFEVI--G----S-ADTLKQALDATRLGGGTSVVVG  285 (365)
T ss_pred             CCCcEEEECC--C----C-HHHHHHHHHHhccCCCEEEEEe
Confidence            4699998543  2    1 236677888899 999998754

NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. There are 7 vertebrate ADH 7 classes, 6 of which have been identified in humans. Class III, glutathione-dependent formaldehyde dehydrogenase, has been identified as the primordial form and exists in diverse species, including plants, micro-organisms, vertebrates, and invertebrates. Class I, typified by liver dehydrogenase, is an evolving form. Gene duplication and functional specialization of ADH into ADH classes and subclasses created numerous forms in vertebrates. For example, the A, B and C (formerly alpha, beta, gamma) human class I subunits have high overall

>KOG0023 consensus Alcohol dehydrogenase, class V [Secondary metabolites biosynthesis, transport and catabolism]

Probab=95.45  E-value=0.066  Score=50.70  Aligned_cols=106  Identities=17%  Similarity=0.119  Sum_probs=68.3

Q ss_pred             HHHhcCCCCCCEEEEeccCCChhhHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEE-EccccchhhcC
Q 042119          122 ILSENGVVQPKKVAFVGSGPMPLTSIIMAKHHLTSTHFDNFDIDEAANDVARSIVASDAEFEGRMKFL-TRDIMEVKEQL  200 (286)
Q Consensus       122 ~l~~~~~~~~~~VL~IG~G~lp~tai~lA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~g~l~~~i~f~-~~D~~~~~~~l  200 (286)
                      .+.+++..++++|..+|-|.+|--++.+|++  .|.+|++||.+...-+   +.++.+| -+.=+.+. ..|.++...  
T Consensus       173 pLk~~g~~pG~~vgI~GlGGLGh~aVq~AKA--MG~rV~vis~~~~kke---ea~~~LG-Ad~fv~~~~d~d~~~~~~--  244 (360)
T KOG0023|consen  173 PLKRSGLGPGKWVGIVGLGGLGHMAVQYAKA--MGMRVTVISTSSKKKE---EAIKSLG-ADVFVDSTEDPDIMKAIM--  244 (360)
T ss_pred             hhHHcCCCCCcEEEEecCcccchHHHHHHHH--hCcEEEEEeCCchhHH---HHHHhcC-cceeEEecCCHHHHHHHH--
Confidence            4556677899999999999999999999995  8999999999974433   3445577 22222222 233322111  


Q ss_pred             CCcceeehhhhccCChhHHHHHHHHHHhhccCCcEEEEee
Q 042119          201 GEYDCIFLAALVGMSKEEKLTILGHIRKYMKDGGILLVRS  240 (286)
Q Consensus       201 ~~fD~V~~aalvg~~~~~k~~vl~~l~~~l~pgg~lv~r~  240 (286)
                      +..|.+...... .    -...++.+.+.||++|.+++-.
T Consensus       245 ~~~dg~~~~v~~-~----a~~~~~~~~~~lk~~Gt~V~vg  279 (360)
T KOG0023|consen  245 KTTDGGIDTVSN-L----AEHALEPLLGLLKVNGTLVLVG  279 (360)
T ss_pred             HhhcCcceeeee-c----cccchHHHHHHhhcCCEEEEEe
Confidence            234443321110 0    0125667888999999999976

>PLN02702 L-idonate 5-dehydrogenase

Probab=95.43  E-value=0.069  Score=50.40  Aligned_cols=102  Identities=18%  Similarity=0.231  Sum_probs=67.7

Q ss_pred             hcCCCCCCEEEEeccCCChhhHHHHHhhcCCCcE-EEEEeCChHHHHHHHHHHHhcCCCCCCeEEE--Eccccchhh---
Q 042119          125 ENGVVQPKKVAFVGSGPMPLTSIIMAKHHLTSTH-FDNFDIDEAANDVARSIVASDAEFEGRMKFL--TRDIMEVKE---  198 (286)
Q Consensus       125 ~~~~~~~~~VL~IG~G~lp~tai~lA~~~~~g~~-V~~iDid~~ai~~Ar~~~~~~g~l~~~i~f~--~~D~~~~~~---  198 (286)
                      .....++.+|+.+|+|++|..++.+|++  .|+. |+++|.+++..+.+++    +| ....+.+.  ..+..+...   
T Consensus       176 ~~~~~~g~~vlI~g~g~vG~~~~~~a~~--~G~~~v~~~~~~~~~~~~~~~----~g-~~~~~~~~~~~~~~~~~~~~~~  248 (364)
T PLN02702        176 RANIGPETNVLVMGAGPIGLVTMLAARA--FGAPRIVIVDVDDERLSVAKQ----LG-ADEIVLVSTNIEDVESEVEEIQ  248 (364)
T ss_pred             hcCCCCCCEEEEECCCHHHHHHHHHHHH--cCCCEEEEECCCHHHHHHHHH----hC-CCEEEecCcccccHHHHHHHHh
Confidence            3455788999999999999999999994  6764 8999999888777665    45 22222221  112211110   


Q ss_pred             --cCCCcceeehhhhccCChhHHHHHHHHHHhhccCCcEEEEee
Q 042119          199 --QLGEYDCIFLAALVGMSKEEKLTILGHIRKYMKDGGILLVRS  240 (286)
Q Consensus       199 --~l~~fD~V~~aalvg~~~~~k~~vl~~l~~~l~pgg~lv~r~  240 (286)
                        .-..+|+|+.+.  +    . ...+....+.++++|+++.-.
T Consensus       249 ~~~~~~~d~vid~~--g----~-~~~~~~~~~~l~~~G~~v~~g  285 (364)
T PLN02702        249 KAMGGGIDVSFDCV--G----F-NKTMSTALEATRAGGKVCLVG  285 (364)
T ss_pred             hhcCCCCCEEEECC--C----C-HHHHHHHHHHHhcCCEEEEEc
Confidence              113589988643  2    1 136788899999999988754

>cd08298 CAD2 Cinnamyl alcohol dehydrogenases (CAD)

Probab=95.43  E-value=0.094  Score=48.32  Aligned_cols=94  Identities=15%  Similarity=0.195  Sum_probs=66.3

Q ss_pred             cCCCCCCEEEEeccCCChhhHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEccccchhhcCCCcce
Q 042119          126 NGVVQPKKVAFVGSGPMPLTSIIMAKHHLTSTHFDNFDIDEAANDVARSIVASDAEFEGRMKFLTRDIMEVKEQLGEYDC  205 (286)
Q Consensus       126 ~~~~~~~~VL~IG~G~lp~tai~lA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~g~l~~~i~f~~~D~~~~~~~l~~fD~  205 (286)
                      ..+.++.+|+..|+|++|..++.+|++  .|.+|++++.+++..+.+++    .| . +  .++..+  +.  .-+++|+
T Consensus       163 ~~~~~~~~vlV~g~g~vg~~~~~la~~--~g~~v~~~~~~~~~~~~~~~----~g-~-~--~~~~~~--~~--~~~~vD~  228 (329)
T cd08298         163 AGLKPGQRLGLYGFGASAHLALQIARY--QGAEVFAFTRSGEHQELARE----LG-A-D--WAGDSD--DL--PPEPLDA  228 (329)
T ss_pred             hCCCCCCEEEEECCcHHHHHHHHHHHH--CCCeEEEEcCChHHHHHHHH----hC-C-c--EEeccC--cc--CCCcccE
Confidence            345788999999999999999999984  78999999999876666643    56 2 1  111111  11  1136898


Q ss_pred             eehhhhccCChhHHHHHHHHHHhhccCCcEEEEee
Q 042119          206 IFLAALVGMSKEEKLTILGHIRKYMKDGGILLVRS  240 (286)
Q Consensus       206 V~~aalvg~~~~~k~~vl~~l~~~l~pgg~lv~r~  240 (286)
                      ++.....       ...++.+.+.|+++|.++.-.
T Consensus       229 vi~~~~~-------~~~~~~~~~~l~~~G~~v~~g  256 (329)
T cd08298         229 AIIFAPV-------GALVPAALRAVKKGGRVVLAG  256 (329)
T ss_pred             EEEcCCc-------HHHHHHHHHHhhcCCEEEEEc
Confidence            8754321       147888999999999999754

These alcohol dehydrogenases are related to the cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Cinnamyl alcohol dehydrogenases (CAD) reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short cha

>PRK08324 short chain dehydrogenase; Validated

Probab=95.43  E-value=0.35  Score=50.17  Aligned_cols=105  Identities=18%  Similarity=0.229  Sum_probs=65.5

Q ss_pred             CCCEEEEecc-CCChhhHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEccccchhh----------
Q 042119          130 QPKKVAFVGS-GPMPLTSIIMAKHHLTSTHFDNFDIDEAANDVARSIVASDAEFEGRMKFLTRDIMEVKE----------  198 (286)
Q Consensus       130 ~~~~VL~IG~-G~lp~tai~lA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~g~l~~~i~f~~~D~~~~~~----------  198 (286)
                      .+++||..|+ |.+|........  ..|++|+.+|++++..+.+.+.+...    .++.++..|+.+...          
T Consensus       421 ~gk~vLVTGasggIG~~la~~L~--~~Ga~Vvl~~r~~~~~~~~~~~l~~~----~~v~~v~~Dvtd~~~v~~~~~~~~~  494 (681)
T PRK08324        421 AGKVALVTGAAGGIGKATAKRLA--AEGACVVLADLDEEAAEAAAAELGGP----DRALGVACDVTDEAAVQAAFEEAAL  494 (681)
T ss_pred             CCCEEEEecCCCHHHHHHHHHHH--HCcCEEEEEeCCHHHHHHHHHHHhcc----CcEEEEEecCCCHHHHHHHHHHHHH
Confidence            5689999995 555554333222  36899999999998766555443221    368889999865321          


Q ss_pred             cCCCcceeehhhhccCC-------hhH-----------HHHHHHHHHhhccC---CcEEEEee
Q 042119          199 QLGEYDCIFLAALVGMS-------KEE-----------KLTILGHIRKYMKD---GGILLVRS  240 (286)
Q Consensus       199 ~l~~fD~V~~aalvg~~-------~~~-----------k~~vl~~l~~~l~p---gg~lv~r~  240 (286)
                      ..+++|+|+.++.+...       .+.           ...+++.+.+.|++   ||.+++-+
T Consensus       495 ~~g~iDvvI~~AG~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~l~~~~~~g~iV~vs  557 (681)
T PRK08324        495 AFGGVDIVVSNAGIAISGPIEETSDEDWRRSFDVNATGHFLVAREAVRIMKAQGLGGSIVFIA  557 (681)
T ss_pred             HcCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCcEEEEEC
Confidence            23468998866543111       010           23456677777776   67776654

>KOG1122 consensus tRNA and rRNA cytosine-C5-methylase (nucleolar protein NOL1/NOP2) [RNA processing and modification]

Probab=95.42  E-value=0.16  Score=49.66  Aligned_cols=110  Identities=16%  Similarity=0.131  Sum_probs=81.5

Q ss_pred             CCCCCEEEEeccCCChhhHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEccccchhh-cCC-Ccce
Q 042119          128 VVQPKKVAFVGSGPMPLTSIIMAKHHLTSTHFDNFDIDEAANDVARSIVASDAEFEGRMKFLTRDIMEVKE-QLG-EYDC  205 (286)
Q Consensus       128 ~~~~~~VL~IG~G~lp~tai~lA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~g~l~~~i~f~~~D~~~~~~-~l~-~fD~  205 (286)
                      +.++.||||.-+-|+|=|+- +|....-.+.|.+-|.+...+..-+.++.++|.  .+.-....|..+++. ... +||=
T Consensus       239 Pq~gERIlDmcAAPGGKTt~-IAalMkn~G~I~AnD~n~~r~~~l~~n~~rlGv--~ntiv~n~D~~ef~~~~~~~~fDR  315 (460)
T KOG1122|consen  239 PQPGERILDMCAAPGGKTTH-IAALMKNTGVIFANDSNENRLKSLKANLHRLGV--TNTIVSNYDGREFPEKEFPGSFDR  315 (460)
T ss_pred             CCCCCeecchhcCCCchHHH-HHHHHcCCceEEecccchHHHHHHHHHHHHhCC--CceEEEccCcccccccccCcccce
Confidence            58899999999999998854 555333457899999999999999999999994  455566777766542 222 6999


Q ss_pred             eehhhhc-c--C---C------h---------hHHHHHHHHHHhhccCCcEEEEee
Q 042119          206 IFLAALV-G--M---S------K---------EEKLTILGHIRKYMKDGGILLVRS  240 (286)
Q Consensus       206 V~~aalv-g--~---~------~---------~~k~~vl~~l~~~l~pgg~lv~r~  240 (286)
                      |+++|-- |  +   +      .         .--.++|.+....++|||+||+.+
T Consensus       316 VLLDAPCSGtgvi~K~~~vkt~k~~~di~~~~~LQr~LllsAi~lv~~GGvLVYST  371 (460)
T KOG1122|consen  316 VLLDAPCSGTGVISKDQSVKTNKTVKDILRYAHLQRELLLSAIDLVKAGGVLVYST  371 (460)
T ss_pred             eeecCCCCCCcccccccccccchhHHHHHHhHHHHHHHHHHHHhhccCCcEEEEEe
Confidence            9887621 1  1   0      0         012467888888999999999975

>TIGR02354 thiF_fam2 thiamine biosynthesis protein ThiF, family 2

Probab=95.41  E-value=0.14  Score=45.18  Aligned_cols=102  Identities=15%  Similarity=0.161  Sum_probs=62.5

Q ss_pred             CCCEEEEeccCCChhhHH-HHHhhcCCCc-EEEEEeCC---hHHHH---------------HHHHHHHhcCCCCCCeEEE
Q 042119          130 QPKKVAFVGSGPMPLTSI-IMAKHHLTST-HFDNFDID---EAAND---------------VARSIVASDAEFEGRMKFL  189 (286)
Q Consensus       130 ~~~~VL~IG~G~lp~tai-~lA~~~~~g~-~V~~iDid---~~ai~---------------~Ar~~~~~~g~l~~~i~f~  189 (286)
                      ...+|+.||||.+|-... .||+   .|. +++-+|.|   ++.+.               .+++.+++.. -.-+++.+
T Consensus        20 ~~~~V~IvG~GglGs~ia~~La~---~Gvg~i~lvD~D~ve~sNL~Rq~~~~~~iG~~Ka~~~~~~l~~in-p~~~i~~~   95 (200)
T TIGR02354        20 EQATVAICGLGGLGSNVAINLAR---AGIGKLILVDFDVVEPSNLNRQQYKASQVGEPKTEALKENISEIN-PYTEIEAY   95 (200)
T ss_pred             hCCcEEEECcCHHHHHHHHHHHH---cCCCEEEEECCCEEcccccccccCChhhCCCHHHHHHHHHHHHHC-CCCEEEEe
Confidence            468999999997776433 3444   566 79999999   43332               2334444443 12344444


Q ss_pred             Eccccc--hhhcCCCcceeehhhhccCChhHHHHHHHHHHhhccCCcEEEE
Q 042119          190 TRDIME--VKEQLGEYDCIFLAALVGMSKEEKLTILGHIRKYMKDGGILLV  238 (286)
Q Consensus       190 ~~D~~~--~~~~l~~fD~V~~aalvg~~~~~k~~vl~~l~~~l~pgg~lv~  238 (286)
                      ..++.+  +...+.++|+|+.+.   -+.+.|..+++.+.+.+++.-++..
T Consensus        96 ~~~i~~~~~~~~~~~~DlVi~a~---Dn~~~k~~l~~~~~~~~~~~~ii~~  143 (200)
T TIGR02354        96 DEKITEENIDKFFKDADIVCEAF---DNAEAKAMLVNAVLEKYKDKYLIAA  143 (200)
T ss_pred             eeeCCHhHHHHHhcCCCEEEECC---CCHHHHHHHHHHHHHHcCCCcEEEE
Confidence            444432  122346799999762   2346788888999998876444443

Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with one the E. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the divergent clade of putative ThiF proteins such found in Campylobacter.

>PRK03659 glutathione-regulated potassium-efflux system protein KefB; Provisional

Probab=95.37  E-value=0.11  Score=53.17  Aligned_cols=96  Identities=14%  Similarity=0.110  Sum_probs=67.0

Q ss_pred             CCEEEEeccCCChhhHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEccccchh----hcCCCccee
Q 042119          131 PKKVAFVGSGPMPLTSIIMAKHHLTSTHFDNFDIDEAANDVARSIVASDAEFEGRMKFLTRDIMEVK----EQLGEYDCI  206 (286)
Q Consensus       131 ~~~VL~IG~G~lp~tai~lA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~g~l~~~i~f~~~D~~~~~----~~l~~fD~V  206 (286)
                      ..+|+.+|+|..|......-+  ..|.+++.+|.||+.++.+++    .|     ...+.||+.+..    ...++.|.|
T Consensus       400 ~~~vII~G~Gr~G~~va~~L~--~~g~~vvvID~d~~~v~~~~~----~g-----~~v~~GDat~~~~L~~agi~~A~~v  468 (601)
T PRK03659        400 KPQVIIVGFGRFGQVIGRLLM--ANKMRITVLERDISAVNLMRK----YG-----YKVYYGDATQLELLRAAGAEKAEAI  468 (601)
T ss_pred             cCCEEEecCchHHHHHHHHHH--hCCCCEEEEECCHHHHHHHHh----CC-----CeEEEeeCCCHHHHHhcCCccCCEE
Confidence            468999999999886554333  268899999999999998765    45     467889998632    134578877


Q ss_pred             ehhhhccCChhHHHHHHHHHHhhccCCcEEEEeec
Q 042119          207 FLAALVGMSKEEKLTILGHIRKYMKDGGILLVRSA  241 (286)
Q Consensus       207 ~~aalvg~~~~~k~~vl~~l~~~l~pgg~lv~r~~  241 (286)
                      +.+.  + + .+....+-...|.+.|...+++|..
T Consensus       469 v~~~--~-d-~~~n~~i~~~~r~~~p~~~IiaRa~  499 (601)
T PRK03659        469 VITC--N-E-PEDTMKIVELCQQHFPHLHILARAR  499 (601)
T ss_pred             EEEe--C-C-HHHHHHHHHHHHHHCCCCeEEEEeC
Confidence            7542  1 2 2333344445667789999999863

>cd08265 Zn_ADH3 Alcohol dehydrogenases of the MDR family

Probab=95.37  E-value=0.057  Score=51.60  Aligned_cols=101  Identities=21%  Similarity=0.204  Sum_probs=66.9

Q ss_pred             CCCCCCEEEEeccCCChhhHHHHHhhcCCCc-EEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEc---cccc-hhh--c
Q 042119          127 GVVQPKKVAFVGSGPMPLTSIIMAKHHLTST-HFDNFDIDEAANDVARSIVASDAEFEGRMKFLTR---DIME-VKE--Q  199 (286)
Q Consensus       127 ~~~~~~~VL~IG~G~lp~tai~lA~~~~~g~-~V~~iDid~~ai~~Ar~~~~~~g~l~~~i~f~~~---D~~~-~~~--~  199 (286)
                      .+.++.+||..|+|++|..++.+|+.  .|+ +|++++.+++..+.+++    +| ...-+.....   +..+ +..  .
T Consensus       200 ~~~~g~~VlV~g~g~vG~~ai~lA~~--~G~~~vi~~~~~~~~~~~~~~----~g-~~~~v~~~~~~~~~~~~~v~~~~~  272 (384)
T cd08265         200 GFRPGAYVVVYGAGPIGLAAIALAKA--AGASKVIAFEISEERRNLAKE----MG-ADYVFNPTKMRDCLSGEKVMEVTK  272 (384)
T ss_pred             CCCCCCEEEEECCCHHHHHHHHHHHH--cCCCEEEEEcCCHHHHHHHHH----cC-CCEEEcccccccccHHHHHHHhcC
Confidence            45788999999999999999999994  677 79999999886555554    56 3221222111   1111 111  1


Q ss_pred             CCCcceeehhhhccCChhHHHHHHHHHHhhccCCcEEEEee
Q 042119          200 LGEYDCIFLAALVGMSKEEKLTILGHIRKYMKDGGILLVRS  240 (286)
Q Consensus       200 l~~fD~V~~aalvg~~~~~k~~vl~~l~~~l~pgg~lv~r~  240 (286)
                      -.++|+|+-+  .|    .....+.+..+.|+++|+++.-+
T Consensus       273 g~gvDvvld~--~g----~~~~~~~~~~~~l~~~G~~v~~g  307 (384)
T cd08265         273 GWGADIQVEA--AG----APPATIPQMEKSIAINGKIVYIG  307 (384)
T ss_pred             CCCCCEEEEC--CC----CcHHHHHHHHHHHHcCCEEEEEC
Confidence            1359988844  33    22346778888999999998754

This group resembles the zinc-dependent alcohol dehydrogenase and has the catalytic and structural zinc-binding sites characteristic of this group. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanedi

>cd05291 HicDH_like L-2-hydroxyisocapronate dehydrogenases and some bacterial L-lactate dehydrogenases

Probab=95.36  E-value=0.18  Score=47.09  Aligned_cols=102  Identities=21%  Similarity=0.236  Sum_probs=60.9

Q ss_pred             CEEEEeccCCChhhHHHHHhhcCCC--cEEEEEeCChHHH-HHHHHHHHhcCCCCCCeEEEEccccchhhcCCCcceeeh
Q 042119          132 KKVAFVGSGPMPLTSIIMAKHHLTS--THFDNFDIDEAAN-DVARSIVASDAEFEGRMKFLTRDIMEVKEQLGEYDCIFL  208 (286)
Q Consensus       132 ~~VL~IG~G~lp~tai~lA~~~~~g--~~V~~iDid~~ai-~~Ar~~~~~~g~l~~~i~f~~~D~~~~~~~l~~fD~V~~  208 (286)
                      ++|..||+|..|.+......  ..|  .+++.+|++++.. ..+.++-+........+.+..+|.    .++.++|+|++
T Consensus         1 ~kI~IIGaG~vG~~~a~~l~--~~g~~~ei~l~D~~~~~~~~~a~dL~~~~~~~~~~~~i~~~~~----~~l~~aDIVIi   74 (306)
T cd05291           1 RKVVIIGAGHVGSSFAYSLV--NQGIADELVLIDINEEKAEGEALDLEDALAFLPSPVKIKAGDY----SDCKDADIVVI   74 (306)
T ss_pred             CEEEEECCCHHHHHHHHHHH--hcCCCCEEEEEeCCcchhhHhHhhHHHHhhccCCCeEEEcCCH----HHhCCCCEEEE
Confidence            48999999988887766544  244  5899999988753 344444333321123445554443    23568999998


Q ss_pred             hhhc----cCChhH----H----HHHHHHHHhhccCCcEEEEee
Q 042119          209 AALV----GMSKEE----K----LTILGHIRKYMKDGGILLVRS  240 (286)
Q Consensus       209 aalv----g~~~~~----k----~~vl~~l~~~l~pgg~lv~r~  240 (286)
                      ++-+    ||+..+    -    .++.+.+.+ -.|.|++++-+
T Consensus        75 tag~~~~~g~~R~dll~~N~~i~~~~~~~i~~-~~~~~~vivvs  117 (306)
T cd05291          75 TAGAPQKPGETRLDLLEKNAKIMKSIVPKIKA-SGFDGIFLVAS  117 (306)
T ss_pred             ccCCCCCCCCCHHHHHHHHHHHHHHHHHHHHH-hCCCeEEEEec
Confidence            7654    333322    2    234444444 36788777754

L-2-hydroxyisocapronate dehydrogenase (HicDH) catalyzes the conversion of a variety of 2-oxo carboxylic acids with medium-sized aliphatic or aromatic side chains. This subfamily is composed of HicDHs and some bacterial L-lactate dehydrogenases (LDH). LDHs catalyze the last step of glycolysis in which pyruvate is converted to L-lactate. Bacterial LDHs can be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. Members of this subfamily with known structures such as the HicDH of Lactobacillus confusus, the non-allosteric LDH of Lactobacillus pentosus, and the allosteric LDH of Bacillus stearothermophilus, show that they exist as homotetramers. The HicDH-like subfamily is part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine

>cd08278 benzyl_alcohol_DH Benzyl alcohol dehydrogenase

Probab=95.35  E-value=0.083  Score=50.05  Aligned_cols=100  Identities=16%  Similarity=0.200  Sum_probs=67.0

Q ss_pred             CCCCCCEEEEeccCCChhhHHHHHhhcCCCc-EEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEccccc-hhh-cCCCc
Q 042119          127 GVVQPKKVAFVGSGPMPLTSIIMAKHHLTST-HFDNFDIDEAANDVARSIVASDAEFEGRMKFLTRDIME-VKE-QLGEY  203 (286)
Q Consensus       127 ~~~~~~~VL~IG~G~lp~tai~lA~~~~~g~-~V~~iDid~~ai~~Ar~~~~~~g~l~~~i~f~~~D~~~-~~~-~l~~f  203 (286)
                      .+.++++||..|+|++|..++.+|++  .|+ .|+++|.+++..+.+++    .| ...-+.....+..+ +.. .-.++
T Consensus       183 ~~~~g~~vlI~g~g~vG~~~~~la~~--~G~~~v~~~~~~~~k~~~~~~----~g-~~~~i~~~~~~~~~~v~~~~~~~~  255 (365)
T cd08278         183 KPRPGSSIAVFGAGAVGLAAVMAAKI--AGCTTIIAVDIVDSRLELAKE----LG-ATHVINPKEEDLVAAIREITGGGV  255 (365)
T ss_pred             CCCCCCEEEEECCCHHHHHHHHHHHH--cCCCeEEEEeCCHHHHHHHHH----cC-CcEEecCCCcCHHHHHHHHhCCCC
Confidence            45678999999999999999999994  678 69999999988777665    45 21111111111111 111 11369


Q ss_pred             ceeehhhhccCChhHHHHHHHHHHhhccCCcEEEEee
Q 042119          204 DCIFLAALVGMSKEEKLTILGHIRKYMKDGGILLVRS  240 (286)
Q Consensus       204 D~V~~aalvg~~~~~k~~vl~~l~~~l~pgg~lv~r~  240 (286)
                      |+|+-+..-       ...+....+.++++|.++.-.
T Consensus       256 d~vld~~g~-------~~~~~~~~~~l~~~G~~v~~g  285 (365)
T cd08278         256 DYALDTTGV-------PAVIEQAVDALAPRGTLALVG  285 (365)
T ss_pred             cEEEECCCC-------cHHHHHHHHHhccCCEEEEeC
Confidence            999865321       135778899999999988754

Benzyl alcohol dehydrogenase is similar to liver alcohol dehydrogenase, but has some amino acid substitutions near the active site, which may determine the enzyme's specificity of oxidizing aromatic substrates. Also known as aryl-alcohol dehydrogenases, they catalyze the conversion of an aromatic alcohol + NAD+ to an aromatic aldehyde + NADH + H+. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononu

>PTZ00117 malate dehydrogenase; Provisional

Probab=95.33  E-value=0.095  Score=49.47  Aligned_cols=101  Identities=12%  Similarity=0.269  Sum_probs=62.4

Q ss_pred             CCCEEEEeccCCChhhHHHHHhhcCCC-cEEEEEeCChHHHHHHHHH--HHhcCCCCCCeEEEE-ccccchhhcCCCcce
Q 042119          130 QPKKVAFVGSGPMPLTSIIMAKHHLTS-THFDNFDIDEAANDVARSI--VASDAEFEGRMKFLT-RDIMEVKEQLGEYDC  205 (286)
Q Consensus       130 ~~~~VL~IG~G~lp~tai~lA~~~~~g-~~V~~iDid~~ai~~Ar~~--~~~~g~l~~~i~f~~-~D~~~~~~~l~~fD~  205 (286)
                      +..+|..||+|.+|.+...++..  .| +.++-+|++++..+ +..+  ...........++.. +|.   . ++.+.|+
T Consensus         4 ~~~KI~IIGaG~vG~~ia~~l~~--~~~~~l~L~Di~~~~~~-g~~lDl~~~~~~~~~~~~i~~~~d~---~-~l~~ADi   76 (319)
T PTZ00117          4 KRKKISMIGAGQIGSTVALLILQ--KNLGDVVLYDVIKGVPQ-GKALDLKHFSTLVGSNINILGTNNY---E-DIKDSDV   76 (319)
T ss_pred             CCcEEEEECCCHHHHHHHHHHHH--CCCCeEEEEECCCccch-hHHHHHhhhccccCCCeEEEeCCCH---H-HhCCCCE
Confidence            45799999999989887666542  44 68999999987644 3332  111111122344443 342   2 5578899


Q ss_pred             eehhhhccCCh------------hHHHHHHHHHHhhccCCcEEEE
Q 042119          206 IFLAALVGMSK------------EEKLTILGHIRKYMKDGGILLV  238 (286)
Q Consensus       206 V~~aalvg~~~------------~~k~~vl~~l~~~l~pgg~lv~  238 (286)
                      |++++.++...            +-+.++.+.+.+. .|.+.+++
T Consensus        77 VVitag~~~~~g~~r~dll~~n~~i~~~i~~~i~~~-~p~a~viv  120 (319)
T PTZ00117         77 VVITAGVQRKEEMTREDLLTINGKIMKSVAESVKKY-CPNAFVIC  120 (319)
T ss_pred             EEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHH-CCCeEEEE
Confidence            99887553222            3355677777776 57775554

>PRK14106 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=95.27  E-value=0.18  Score=49.28  Aligned_cols=74  Identities=22%  Similarity=0.143  Sum_probs=48.7

Q ss_pred             CCCEEEEeccCCChhhHHHHHhhcCCCcEEEEEeCCh-HHHHHHHHHHHhcCCCCCCeEEEEccccchhhcCCCcceeeh
Q 042119          130 QPKKVAFVGSGPMPLTSIIMAKHHLTSTHFDNFDIDE-AANDVARSIVASDAEFEGRMKFLTRDIMEVKEQLGEYDCIFL  208 (286)
Q Consensus       130 ~~~~VL~IG~G~lp~tai~lA~~~~~g~~V~~iDid~-~ai~~Ar~~~~~~g~l~~~i~f~~~D~~~~~~~l~~fD~V~~  208 (286)
                      .+++|+.+|+|+.|+.......  ..|++|+++|.++ +.++...+.+.+.|     +++..+|..+  ...+++|+|+.
T Consensus         4 ~~k~v~iiG~g~~G~~~A~~l~--~~G~~V~~~d~~~~~~~~~~~~~l~~~~-----~~~~~~~~~~--~~~~~~d~vv~   74 (450)
T PRK14106          4 KGKKVLVVGAGVSGLALAKFLK--KLGAKVILTDEKEEDQLKEALEELGELG-----IELVLGEYPE--EFLEGVDLVVV   74 (450)
T ss_pred             CCCEEEEECCCHHHHHHHHHHH--HCCCEEEEEeCCchHHHHHHHHHHHhcC-----CEEEeCCcch--hHhhcCCEEEE
Confidence            4689999999988775444332  4799999999986 33322222233334     5677788754  23457999988


Q ss_pred             hhhc
Q 042119          209 AALV  212 (286)
Q Consensus       209 aalv  212 (286)
                      +..+
T Consensus        75 ~~g~   78 (450)
T PRK14106         75 SPGV   78 (450)
T ss_pred             CCCC
Confidence            7654

>PHA01634 hypothetical protein

Probab=95.27  E-value=0.085  Score=43.77  Aligned_cols=72  Identities=10%  Similarity=0.131  Sum_probs=51.8

Q ss_pred             CCCCEEEEeccCCChhhHHHHHhhcCCCc-EEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEccccchhhcCCCcceee
Q 042119          129 VQPKKVAFVGSGPMPLTSIIMAKHHLTST-HFDNFDIDEAANDVARSIVASDAEFEGRMKFLTRDIMEVKEQLGEYDCIF  207 (286)
Q Consensus       129 ~~~~~VL~IG~G~lp~tai~lA~~~~~g~-~V~~iDid~~ai~~Ar~~~~~~g~l~~~i~f~~~D~~~~~~~l~~fD~V~  207 (286)
                      ..+++|++||.+ .|-|||+++-   .|| .|++++.+|...+..+++++-... -++..- .+   +.+...+.||+..
T Consensus        27 vk~KtV~dIGA~-iGdSaiYF~l---~GAK~Vva~E~~~kl~k~~een~k~nnI-~DK~v~-~~---eW~~~Y~~~Di~~   97 (156)
T PHA01634         27 VYQRTIQIVGAD-CGSSALYFLL---RGASFVVQYEKEEKLRKKWEEVCAYFNI-CDKAVM-KG---EWNGEYEDVDIFV   97 (156)
T ss_pred             ecCCEEEEecCC-ccchhhHHhh---cCccEEEEeccCHHHHHHHHHHhhhhee-eeceee-cc---cccccCCCcceEE
Confidence            578999999998 8999999986   555 699999999999999998776542 122111 11   2344556788765


Q ss_pred             hh
Q 042119          208 LA  209 (286)
Q Consensus       208 ~a  209 (286)
                      ++
T Consensus        98 iD   99 (156)
T PHA01634         98 MD   99 (156)
T ss_pred             EE
Confidence            44

>PRK01438 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=95.26  E-value=0.07  Score=52.71  Aligned_cols=74  Identities=9%  Similarity=-0.046  Sum_probs=50.3

Q ss_pred             CCCCEEEEeccCCChhhHHHHHhhcCCCcEEEEEeCChH-HHHHHHHHHHhcCCCCCCeEEEEccccchhhcCCCcceee
Q 042119          129 VQPKKVAFVGSGPMPLTSIIMAKHHLTSTHFDNFDIDEA-ANDVARSIVASDAEFEGRMKFLTRDIMEVKEQLGEYDCIF  207 (286)
Q Consensus       129 ~~~~~VL~IG~G~lp~tai~lA~~~~~g~~V~~iDid~~-ai~~Ar~~~~~~g~l~~~i~f~~~D~~~~~~~l~~fD~V~  207 (286)
                      ..+++|+.||+|+.|+++..+..  ..|.+|+++|.++. ......+.+++.|     +++..++..+   ....+|+|+
T Consensus        14 ~~~~~v~viG~G~~G~~~A~~L~--~~G~~V~~~d~~~~~~~~~~~~~l~~~g-----v~~~~~~~~~---~~~~~D~Vv   83 (480)
T PRK01438         14 WQGLRVVVAGLGVSGFAAADALL--ELGARVTVVDDGDDERHRALAAILEALG-----ATVRLGPGPT---LPEDTDLVV   83 (480)
T ss_pred             cCCCEEEEECCCHHHHHHHHHHH--HCCCEEEEEeCCchhhhHHHHHHHHHcC-----CEEEECCCcc---ccCCCCEEE
Confidence            34679999999999998766555  37899999996653 3332233455555     6777766433   224689999


Q ss_pred             hhhhc
Q 042119          208 LAALV  212 (286)
Q Consensus       208 ~aalv  212 (286)
                      .+..+
T Consensus        84 ~s~Gi   88 (480)
T PRK01438         84 TSPGW   88 (480)
T ss_pred             ECCCc
Confidence            87655

>cd05288 PGDH Prostaglandin dehydrogenases

Probab=95.24  E-value=0.13  Score=47.15  Aligned_cols=99  Identities=15%  Similarity=0.158  Sum_probs=65.9

Q ss_pred             CCCCCEEEEec-cCCChhhHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEccccchhhcC--CCcc
Q 042119          128 VVQPKKVAFVG-SGPMPLTSIIMAKHHLTSTHFDNFDIDEAANDVARSIVASDAEFEGRMKFLTRDIMEVKEQL--GEYD  204 (286)
Q Consensus       128 ~~~~~~VL~IG-~G~lp~tai~lA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~g~l~~~i~f~~~D~~~~~~~l--~~fD  204 (286)
                      ..++.+||..| +|++|..++.+|++  .|++|++++.+++..+.+++.   .| ...-+.....+..+....+  .++|
T Consensus       143 ~~~~~~vlI~g~~g~ig~~~~~~a~~--~G~~vi~~~~~~~~~~~~~~~---~g-~~~~~~~~~~~~~~~v~~~~~~~~d  216 (329)
T cd05288         143 PKPGETVVVSAAAGAVGSVVGQIAKL--LGARVVGIAGSDEKCRWLVEE---LG-FDAAINYKTPDLAEALKEAAPDGID  216 (329)
T ss_pred             CCCCCEEEEecCcchHHHHHHHHHHH--cCCEEEEEeCCHHHHHHHHhh---cC-CceEEecCChhHHHHHHHhccCCce
Confidence            46789999999 69999999999994  789999999999877766553   45 2111222111111101111  4699


Q ss_pred             eeehhhhccCChhHHHHHHHHHHhhccCCcEEEEee
Q 042119          205 CIFLAALVGMSKEEKLTILGHIRKYMKDGGILLVRS  240 (286)
Q Consensus       205 ~V~~aalvg~~~~~k~~vl~~l~~~l~pgg~lv~r~  240 (286)
                      +|+-+.  |    .  ..+....+.++++|.++.-.
T Consensus       217 ~vi~~~--g----~--~~~~~~~~~l~~~G~~v~~g  244 (329)
T cd05288         217 VYFDNV--G----G--EILDAALTLLNKGGRIALCG  244 (329)
T ss_pred             EEEEcc--h----H--HHHHHHHHhcCCCceEEEEe
Confidence            988542  2    1  36778888999999988654

Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino

>COG1004 Ugd Predicted UDP-glucose 6-dehydrogenase [Cell envelope biogenesis, outer membrane]

Probab=95.22  E-value=0.19  Score=48.83  Aligned_cols=101  Identities=19%  Similarity=0.352  Sum_probs=70.4

Q ss_pred             CEEEEeccCCChhh-HHHHHhhcCCCcEEEEEeCChHHHHHHH------------HHHHhcCCCCCCeEEEEccccchhh
Q 042119          132 KKVAFVGSGPMPLT-SIIMAKHHLTSTHFDNFDIDEAANDVAR------------SIVASDAEFEGRMKFLTRDIMEVKE  198 (286)
Q Consensus       132 ~~VL~IG~G~lp~t-ai~lA~~~~~g~~V~~iDid~~ai~~Ar------------~~~~~~g~l~~~i~f~~~D~~~~~~  198 (286)
                      +||..||+|=.|++ +.+||+   .|.+|+|+|+|+.-++.-+            +++++.. ...|++|- .|.   ..
T Consensus         1 MkI~viGtGYVGLv~g~~lA~---~GHeVv~vDid~~KV~~ln~g~~PI~EpgLe~ll~~~~-~~gRl~fT-td~---~~   72 (414)
T COG1004           1 MKITVIGTGYVGLVTGACLAE---LGHEVVCVDIDESKVELLNKGISPIYEPGLEELLKENL-ASGRLRFT-TDY---EE   72 (414)
T ss_pred             CceEEECCchHHHHHHHHHHH---cCCeEEEEeCCHHHHHHHhCCCCCCcCccHHHHHHhcc-ccCcEEEE-cCH---HH
Confidence            58999999988875 567777   7899999999999998754            3444333 24567774 333   33


Q ss_pred             cCCCcceeehhhhcc------CChhHHHHHHHHHHhhccCCcEEEEee
Q 042119          199 QLGEYDCIFLAALVG------MSKEEKLTILGHIRKYMKDGGILLVRS  240 (286)
Q Consensus       199 ~l~~fD~V~~aalvg------~~~~~k~~vl~~l~~~l~pgg~lv~r~  240 (286)
                      .+...|++|++.--.      .+..-=..+.+.+.+.++...+++..|
T Consensus        73 a~~~adv~fIavgTP~~~dg~aDl~~V~ava~~i~~~~~~~~vvV~KS  120 (414)
T COG1004          73 AVKDADVVFIAVGTPPDEDGSADLSYVEAVAKDIGEILDGKAVVVIKS  120 (414)
T ss_pred             HHhcCCEEEEEcCCCCCCCCCccHHHHHHHHHHHHhhcCCCeEEEEcC
Confidence            445789999875321      122334567888888988878888876

>cd01339 LDH-like_MDH L-lactate dehydrogenase-like malate dehydrogenase proteins

Probab=95.22  E-value=0.1  Score=48.65  Aligned_cols=97  Identities=19%  Similarity=0.296  Sum_probs=57.2

Q ss_pred             EEEeccCCChhhHHHHHhhcCCCc-EEEEEeCChHHHHHHHHH--HHhcCCCCCCeEEEE-ccccchhhcCCCcceeehh
Q 042119          134 VAFVGSGPMPLTSIIMAKHHLTST-HFDNFDIDEAANDVARSI--VASDAEFEGRMKFLT-RDIMEVKEQLGEYDCIFLA  209 (286)
Q Consensus       134 VL~IG~G~lp~tai~lA~~~~~g~-~V~~iDid~~ai~~Ar~~--~~~~g~l~~~i~f~~-~D~~~~~~~l~~fD~V~~a  209 (286)
                      |..||+|.+|.+......  ..|. +|+.+|++++.. .++..  ...........++.. +|.    .++.+.|+|+++
T Consensus         1 I~IIGaG~vG~~ia~~la--~~~l~eV~L~Di~e~~~-~g~~~dl~~~~~~~~~~~~I~~t~d~----~~l~dADiVIit   73 (300)
T cd01339           1 ISIIGAGNVGATLAQLLA--LKELGDVVLLDIVEGLP-QGKALDISQAAPILGSDTKVTGTNDY----EDIAGSDVVVIT   73 (300)
T ss_pred             CEEECCCHHHHHHHHHHH--hCCCcEEEEEeCCCcHH-HHHHHHHHHhhhhcCCCeEEEEcCCH----HHhCCCCEEEEe
Confidence            568999998887665443  2333 999999998743 33332  221110112344442 442    245788999976


Q ss_pred             hhc------------cCChhHHHHHHHHHHhhccCCcEEEE
Q 042119          210 ALV------------GMSKEEKLTILGHIRKYMKDGGILLV  238 (286)
Q Consensus       210 alv------------g~~~~~k~~vl~~l~~~l~pgg~lv~  238 (286)
                      +.+            ..+.+-+.++++.+.+.. |.+.+++
T Consensus        74 ~g~p~~~~~~r~e~~~~n~~i~~~i~~~i~~~~-p~~~iIv  113 (300)
T cd01339          74 AGIPRKPGMSRDDLLGTNAKIVKEVAENIKKYA-PNAIVIV  113 (300)
T ss_pred             cCCCCCcCCCHHHHHHHHHHHHHHHHHHHHHHC-CCeEEEE
Confidence            532            123345778888888876 5565444

Members of this subfamily have an LDH-like structure and an MDH enzymatic activity. Some members, like MJ0490 from Methanococcus jannaschii, exhibit both MDH and LDH activities. Tetrameric MDHs, including those from phototrophic bacteria, are more similar to LDHs than to other MDHs. LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH-like MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenas

>PRK05708 2-dehydropantoate 2-reductase; Provisional

Probab=95.19  E-value=0.073  Score=49.78  Aligned_cols=95  Identities=9%  Similarity=0.057  Sum_probs=57.2

Q ss_pred             CEEEEeccCCChhh-HHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCC----CCCCeEEEEccccchhhcCCCccee
Q 042119          132 KKVAFVGSGPMPLT-SIIMAKHHLTSTHFDNFDIDEAANDVARSIVASDAE----FEGRMKFLTRDIMEVKEQLGEYDCI  206 (286)
Q Consensus       132 ~~VL~IG~G~lp~t-ai~lA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~g~----l~~~i~f~~~D~~~~~~~l~~fD~V  206 (286)
                      +||+.||+|++|.. +..|++   .|..|+.++.+++.++.-++.   -|+    -.....+... .. .+...+.||+|
T Consensus         3 m~I~IiGaGaiG~~~a~~L~~---~G~~V~lv~r~~~~~~~i~~~---~Gl~i~~~g~~~~~~~~-~~-~~~~~~~~D~v   74 (305)
T PRK05708          3 MTWHILGAGSLGSLWACRLAR---AGLPVRLILRDRQRLAAYQQA---GGLTLVEQGQASLYAIP-AE-TADAAEPIHRL   74 (305)
T ss_pred             ceEEEECCCHHHHHHHHHHHh---CCCCeEEEEechHHHHHHhhc---CCeEEeeCCcceeeccC-CC-CcccccccCEE
Confidence            58999999988753 444555   678999999987655443331   121    0111121111 11 11223579999


Q ss_pred             ehhhhccCChhHHHHHHHHHHhhccCCcEEEE
Q 042119          207 FLAALVGMSKEEKLTILGHIRKYMKDGGILLV  238 (286)
Q Consensus       207 ~~aalvg~~~~~k~~vl~~l~~~l~pgg~lv~  238 (286)
                      +++ ...   -+-.++++.+.+.+.+++.++.
T Consensus        75 iv~-vK~---~~~~~al~~l~~~l~~~t~vv~  102 (305)
T PRK05708         75 LLA-CKA---YDAEPAVASLAHRLAPGAELLL  102 (305)
T ss_pred             EEE-CCH---HhHHHHHHHHHhhCCCCCEEEE
Confidence            986 332   2334688899999999886544

>PF03807 F420_oxidored: NADP oxidoreductase coenzyme F420-dependent; InterPro: IPR004455 The function of F420-dependent NADP reductase is the transfer of electrons from reduced coenzyme F420 into an electron transport chain

Probab=95.16  E-value=0.13  Score=39.04  Aligned_cols=87  Identities=15%  Similarity=0.126  Sum_probs=54.9

Q ss_pred             EEEEeccCCChhhHHHHHhhcCCC---cEEE-EEeCChHHHHHHHHHHHhcCCCCCCeEEEEccccchhhcCCCcceeeh
Q 042119          133 KVAFVGSGPMPLTSIIMAKHHLTS---THFD-NFDIDEAANDVARSIVASDAEFEGRMKFLTRDIMEVKEQLGEYDCIFL  208 (286)
Q Consensus       133 ~VL~IG~G~lp~tai~lA~~~~~g---~~V~-~iDid~~ai~~Ar~~~~~~g~l~~~i~f~~~D~~~~~~~l~~fD~V~~  208 (286)
                      ||.+||+|.+|.....--  ...|   .+|+ +.+.+++..+...+.   .+     +.+...|..+..   +..|+||+
T Consensus         1 kI~iIG~G~mg~al~~~l--~~~g~~~~~v~~~~~r~~~~~~~~~~~---~~-----~~~~~~~~~~~~---~~advvil   67 (96)
T PF03807_consen    1 KIGIIGAGNMGSALARGL--LASGIKPHEVIIVSSRSPEKAAELAKE---YG-----VQATADDNEEAA---QEADVVIL   67 (96)
T ss_dssp             EEEEESTSHHHHHHHHHH--HHTTS-GGEEEEEEESSHHHHHHHHHH---CT-----TEEESEEHHHHH---HHTSEEEE
T ss_pred             CEEEECCCHHHHHHHHHH--HHCCCCceeEEeeccCcHHHHHHHHHh---hc-----cccccCChHHhh---ccCCEEEE
Confidence            689999998765433211  2245   8898 449999887665544   44     344443443433   36799998


Q ss_pred             hhhccCChhHHHHHHHHHHhhccCCcEEE
Q 042119          209 AALVGMSKEEKLTILGHIRKYMKDGGILL  237 (286)
Q Consensus       209 aalvg~~~~~k~~vl~~l~~~l~pgg~lv  237 (286)
                      +.-    +..-.+++..+ +...+|..++
T Consensus        68 av~----p~~~~~v~~~i-~~~~~~~~vi   91 (96)
T PF03807_consen   68 AVK----PQQLPEVLSEI-PHLLKGKLVI   91 (96)
T ss_dssp             -S-----GGGHHHHHHHH-HHHHTTSEEE
T ss_pred             EEC----HHHHHHHHHHH-hhccCCCEEE
Confidence            742    35666788888 6777777665

It catalyses the reduction of F420 with NADP(+) and the reduction of NADP(+) with F420H(2).; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2IZZ_B 2GR9_B 2GRA_B 2GER_C 2AMF_E 2AHR_C 2VQ3_B 2VNS_B 2RCY_D 2YJZ_D ....

>TIGR00692 tdh L-threonine 3-dehydrogenase

Probab=95.15  E-value=0.077  Score=49.43  Aligned_cols=99  Identities=17%  Similarity=0.154  Sum_probs=66.2

Q ss_pred             CCCCCEEEEeccCCChhhHHHHHhhcCCCcE-EEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEccccchhh---cCCCc
Q 042119          128 VVQPKKVAFVGSGPMPLTSIIMAKHHLTSTH-FDNFDIDEAANDVARSIVASDAEFEGRMKFLTRDIMEVKE---QLGEY  203 (286)
Q Consensus       128 ~~~~~~VL~IG~G~lp~tai~lA~~~~~g~~-V~~iDid~~ai~~Ar~~~~~~g~l~~~i~f~~~D~~~~~~---~l~~f  203 (286)
                      ..++.+|+..|+|++|..++.+|+.  .|.+ |++++.+++..+.+++    +| ...-+.....+..+...   .-.+|
T Consensus       159 ~~~g~~vlI~~~g~vg~~a~~la~~--~G~~~v~~~~~~~~~~~~~~~----~g-~~~~v~~~~~~~~~~l~~~~~~~~~  231 (340)
T TIGR00692       159 PISGKSVLVTGAGPIGLMAIAVAKA--SGAYPVIVSDPNEYRLELAKK----MG-ATYVVNPFKEDVVKEVADLTDGEGV  231 (340)
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHHH--cCCcEEEEECCCHHHHHHHHH----hC-CcEEEcccccCHHHHHHHhcCCCCC
Confidence            4678999999999999999999994  6886 8899999888777665    35 21112221222211111   12369


Q ss_pred             ceeehhhhccCChhHHHHHHHHHHhhccCCcEEEEee
Q 042119          204 DCIFLAALVGMSKEEKLTILGHIRKYMKDGGILLVRS  240 (286)
Q Consensus       204 D~V~~aalvg~~~~~k~~vl~~l~~~l~pgg~lv~r~  240 (286)
                      |+|+.+..     ..  ..+..+.+.|+++|.++.-.
T Consensus       232 d~vld~~g-----~~--~~~~~~~~~l~~~g~~v~~g  261 (340)
T TIGR00692       232 DVFLEMSG-----AP--KALEQGLQAVTPGGRVSLLG  261 (340)
T ss_pred             CEEEECCC-----CH--HHHHHHHHhhcCCCEEEEEc
Confidence            99986532     11  35778899999999988765

E. coli His-90 modulates substrate specificity and is believed part of the active site.

>KOG4058 consensus Uncharacterized conserved protein [Function unknown]

Probab=95.14  E-value=0.11  Score=44.26  Aligned_cols=112  Identities=16%  Similarity=0.115  Sum_probs=71.9

Q ss_pred             hhhhHHHHHHHHhcCC-CCCCEEEEeccCCChhhHHHHHhhcCCC-cEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEE
Q 042119          113 VKLSKLEYTILSENGV-VQPKKVAFVGSGPMPLTSIIMAKHHLTS-THFDNFDIDEAANDVARSIVASDAEFEGRMKFLT  190 (286)
Q Consensus       113 ~~l~~~E~~~l~~~~~-~~~~~VL~IG~G~lp~tai~lA~~~~~g-~~V~~iDid~~ai~~Ar~~~~~~g~l~~~i~f~~  190 (286)
                      +.-...+.+-..+... .+..+.+|+|||- |---+.-|+   -| ..-+|++.+|--+.++|-..-+.| .+++.+|..
T Consensus        54 VpAtteQv~nVLSll~~n~~GklvDlGSGD-GRiVlaaar---~g~~~a~GvELNpwLVaysrl~a~R~g-~~k~trf~R  128 (199)
T KOG4058|consen   54 VPATTEQVENVLSLLRGNPKGKLVDLGSGD-GRIVLAAAR---CGLRPAVGVELNPWLVAYSRLHAWRAG-CAKSTRFRR  128 (199)
T ss_pred             cCccHHHHHHHHHHccCCCCCcEEeccCCC-ceeehhhhh---hCCCcCCceeccHHHHHHHHHHHHHHh-cccchhhhh
Confidence            4444333333333333 4557999999995 443333333   34 567899999999999999988899 899999999


Q ss_pred             ccccchhhcCCCcc--eeehhhhccCChhHHHHHHHHHHhhccCCcEEE
Q 042119          191 RDIMEVKEQLGEYD--CIFLAALVGMSKEEKLTILGHIRKYMKDGGILL  237 (286)
Q Consensus       191 ~D~~~~~~~l~~fD--~V~~aalvg~~~~~k~~vl~~l~~~l~pgg~lv  237 (286)
                      -|+  ...++.+|.  +||.+-.+--+.++      .+...|..+..++
T Consensus       129 kdl--wK~dl~dy~~vviFgaes~m~dLe~------KL~~E~p~nt~vv  169 (199)
T KOG4058|consen  129 KDL--WKVDLRDYRNVVIFGAESVMPDLED------KLRTELPANTRVV  169 (199)
T ss_pred             hhh--hhccccccceEEEeehHHHHhhhHH------HHHhhCcCCCeEE
Confidence            998  456666665  34444332112233      3555677777654

>PRK06223 malate dehydrogenase; Reviewed

Probab=95.13  E-value=0.091  Score=48.88  Aligned_cols=101  Identities=22%  Similarity=0.264  Sum_probs=59.4

Q ss_pred             CEEEEeccCCChhhHHHHHhhcCCCcEEEEEeCChHHHHHHHH--HHHhcCCCCCCeEEE-EccccchhhcCCCcceeeh
Q 042119          132 KKVAFVGSGPMPLTSIIMAKHHLTSTHFDNFDIDEAANDVARS--IVASDAEFEGRMKFL-TRDIMEVKEQLGEYDCIFL  208 (286)
Q Consensus       132 ~~VL~IG~G~lp~tai~lA~~~~~g~~V~~iDid~~ai~~Ar~--~~~~~g~l~~~i~f~-~~D~~~~~~~l~~fD~V~~  208 (286)
                      ++|..||+|.+|.+..........+ +|+.+|++++..+ ++.  +...........++. ++|.    .++.+.|+|++
T Consensus         3 ~KI~VIGaG~vG~~ia~~la~~~~~-ev~L~D~~~~~~~-~~~~dl~~~~~~~~~~~~i~~~~d~----~~~~~aDiVii   76 (307)
T PRK06223          3 KKISIIGAGNVGATLAHLLALKELG-DVVLFDIVEGVPQ-GKALDIAEAAPVEGFDTKITGTNDY----EDIAGSDVVVI   76 (307)
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCe-EEEEEECCCchhH-HHHHHHHhhhhhcCCCcEEEeCCCH----HHHCCCCEEEE
Confidence            5899999999888766544421123 9999999998753 322  222211011223443 2342    23567899998


Q ss_pred             hhhcc------------CChhHHHHHHHHHHhhccCCcEEEEe
Q 042119          209 AALVG------------MSKEEKLTILGHIRKYMKDGGILLVR  239 (286)
Q Consensus       209 aalvg------------~~~~~k~~vl~~l~~~l~pgg~lv~r  239 (286)
                      ++-+.            .+.+.+.++++.+.+.. |++.+++-
T Consensus        77 ~~~~p~~~~~~r~~~~~~n~~i~~~i~~~i~~~~-~~~~viv~  118 (307)
T PRK06223         77 TAGVPRKPGMSRDDLLGINAKIMKDVAEGIKKYA-PDAIVIVV  118 (307)
T ss_pred             CCCCCCCcCCCHHHHHHHHHHHHHHHHHHHHHHC-CCeEEEEe
Confidence            75431            12244677777777775 66655554

>PLN02712 arogenate dehydrogenase

Probab=95.13  E-value=0.89  Score=47.34  Aligned_cols=91  Identities=13%  Similarity=0.111  Sum_probs=56.4

Q ss_pred             CCCCEEEEeccCCChhhHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEccccchhhcCCCcceeeh
Q 042119          129 VQPKKVAFVGSGPMPLTSIIMAKHHLTSTHFDNFDIDEAANDVARSIVASDAEFEGRMKFLTRDIMEVKEQLGEYDCIFL  208 (286)
Q Consensus       129 ~~~~~VL~IG~G~lp~tai~lA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~g~l~~~i~f~~~D~~~~~~~l~~fD~V~~  208 (286)
                      ..+.+|.+||.|.+|.+.....+  ..|.+|+++|.++.. +.    +...| .    .+ ..|..++..  ...|+|++
T Consensus       367 ~~~~kIgIIGlG~mG~slA~~L~--~~G~~V~~~dr~~~~-~~----a~~~G-v----~~-~~~~~el~~--~~aDvVIL  431 (667)
T PLN02712        367 GSKLKIAIVGFGNFGQFLAKTMV--KQGHTVLAYSRSDYS-DE----AQKLG-V----SY-FSDADDLCE--EHPEVILL  431 (667)
T ss_pred             CCCCEEEEEecCHHHHHHHHHHH--HCcCEEEEEECChHH-HH----HHHcC-C----eE-eCCHHHHHh--cCCCEEEE
Confidence            36689999999988765433222  257899999999642 22    33456 2    22 234333221  24799998


Q ss_pred             hhhccCChhHHHHHHHHHHh-hccCCcEEEE
Q 042119          209 AALVGMSKEEKLTILGHIRK-YMKDGGILLV  238 (286)
Q Consensus       209 aalvg~~~~~k~~vl~~l~~-~l~pgg~lv~  238 (286)
                      +.-+    ..-..+++++.. .++||.+++=
T Consensus       432 avP~----~~~~~vi~~l~~~~lk~g~ivvD  458 (667)
T PLN02712        432 CTSI----LSTEKVLKSLPFQRLKRSTLFVD  458 (667)
T ss_pred             CCCh----HHHHHHHHHHHHhcCCCCcEEEE
Confidence            8543    344567777765 6788876654

>cd05283 CAD1 Cinnamyl alcohol dehydrogenases (CAD)

Probab=95.11  E-value=0.15  Score=47.48  Aligned_cols=101  Identities=24%  Similarity=0.295  Sum_probs=67.7

Q ss_pred             HHhcCCCCCCEEEEeccCCChhhHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEccccchhhc-CC
Q 042119          123 LSENGVVQPKKVAFVGSGPMPLTSIIMAKHHLTSTHFDNFDIDEAANDVARSIVASDAEFEGRMKFLTRDIMEVKEQ-LG  201 (286)
Q Consensus       123 l~~~~~~~~~~VL~IG~G~lp~tai~lA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~g~l~~~i~f~~~D~~~~~~~-l~  201 (286)
                      +.+..+.++.+|+..|+|++|..++.+|++  .|.+|++++.+++..+.+++    +|.  +.+ +...+ .+.... ..
T Consensus       162 ~~~~~~~~g~~vlV~g~g~vG~~~~~~a~~--~G~~v~~~~~~~~~~~~~~~----~g~--~~v-i~~~~-~~~~~~~~~  231 (337)
T cd05283         162 LKRNGVGPGKRVGVVGIGGLGHLAVKFAKA--LGAEVTAFSRSPSKKEDALK----LGA--DEF-IATKD-PEAMKKAAG  231 (337)
T ss_pred             HHhcCCCCCCEEEEECCcHHHHHHHHHHHH--cCCeEEEEcCCHHHHHHHHH----cCC--cEE-ecCcc-hhhhhhccC
Confidence            334456788999999999999999999984  68999999999988777754    451  211 11111 111111 24


Q ss_pred             CcceeehhhhccCChhHHHHHHHHHHhhccCCcEEEEee
Q 042119          202 EYDCIFLAALVGMSKEEKLTILGHIRKYMKDGGILLVRS  240 (286)
Q Consensus       202 ~fD~V~~aalvg~~~~~k~~vl~~l~~~l~pgg~lv~r~  240 (286)
                      .+|+|+.+.-.     .  ..+....+.++++|.++.-.
T Consensus       232 ~~d~v~~~~g~-----~--~~~~~~~~~l~~~G~~v~~g  263 (337)
T cd05283         232 SLDLIIDTVSA-----S--HDLDPYLSLLKPGGTLVLVG  263 (337)
T ss_pred             CceEEEECCCC-----c--chHHHHHHHhcCCCEEEEEe
Confidence            69999854321     1  24567788889999988754

Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic

>cd08282 PFDH_like Pseudomonas putida aldehyde-dismutating formaldehyde dehydrogenase (PFDH)

Probab=95.11  E-value=0.13  Score=48.97  Aligned_cols=106  Identities=20%  Similarity=0.158  Sum_probs=68.7

Q ss_pred             hcCCCCCCEEEEeccCCChhhHHHHHhhcCCCc-EEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEccccc-hhhcC-C
Q 042119          125 ENGVVQPKKVAFVGSGPMPLTSIIMAKHHLTST-HFDNFDIDEAANDVARSIVASDAEFEGRMKFLTRDIME-VKEQL-G  201 (286)
Q Consensus       125 ~~~~~~~~~VL~IG~G~lp~tai~lA~~~~~g~-~V~~iDid~~ai~~Ar~~~~~~g~l~~~i~f~~~D~~~-~~~~l-~  201 (286)
                      .....++++|+..|+|++|..++.+|++  .|+ +|+++|.+++..+.+++    +| . ..+.+...+..+ +.... .
T Consensus       171 ~~~~~~g~~vlI~g~g~vg~~~~~~a~~--~G~~~vi~~~~~~~~~~~~~~----~g-~-~~v~~~~~~~~~~i~~~~~~  242 (375)
T cd08282         171 LAGVQPGDTVAVFGAGPVGLMAAYSAIL--RGASRVYVVDHVPERLDLAES----IG-A-IPIDFSDGDPVEQILGLEPG  242 (375)
T ss_pred             hcCCCCCCEEEEECCCHHHHHHHHHHHH--cCCCEEEEECCCHHHHHHHHH----cC-C-eEeccCcccHHHHHHHhhCC
Confidence            4456788999999999999999999984  676 79999999888776665    45 1 112121111111 11111 3


Q ss_pred             CcceeehhhhccCCh------hHHHHHHHHHHhhccCCcEEEEee
Q 042119          202 EYDCIFLAALVGMSK------EEKLTILGHIRKYMKDGGILLVRS  240 (286)
Q Consensus       202 ~fD~V~~aalvg~~~------~~k~~vl~~l~~~l~pgg~lv~r~  240 (286)
                      .+|+|+.+.--  ..      ..+...+....+.++++|.++...
T Consensus       243 ~~d~v~d~~g~--~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~g  285 (375)
T cd08282         243 GVDRAVDCVGY--EARDRGGEAQPNLVLNQLIRVTRPGGGIGIVG  285 (375)
T ss_pred             CCCEEEECCCC--cccccccccchHHHHHHHHHHhhcCcEEEEEe
Confidence            68998865321  10      123346788899999999997643

Formaldehyde dehydrogenase (FDH) is a member of the zinc-dependent/medium chain alcohol dehydrogenase family. Unlike typical FDH, Pseudomonas putida aldehyde-dismutating FDH (PFDH) is glutathione-independent. PFDH converts 2 molecules of aldehydes to corresponding carboxylic acid and alcohol. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like the zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these tetrameric FDHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains and a structural zinc in a lobe of the catalytic domain. Unlike ADH, where NAD(P)(H) acts as a cofactor, NADH in FDH is a tightly bound redox cofactor (similar to nicotinamide proteins). The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fo

>PRK09496 trkA potassium transporter peripheral membrane component; Reviewed

Probab=95.10  E-value=0.19  Score=48.93  Aligned_cols=95  Identities=14%  Similarity=0.084  Sum_probs=63.9

Q ss_pred             CEEEEeccCCChhhHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEccccchhh----cCCCcceee
Q 042119          132 KKVAFVGSGPMPLTSIIMAKHHLTSTHFDNFDIDEAANDVARSIVASDAEFEGRMKFLTRDIMEVKE----QLGEYDCIF  207 (286)
Q Consensus       132 ~~VL~IG~G~lp~tai~lA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~g~l~~~i~f~~~D~~~~~~----~l~~fD~V~  207 (286)
                      ++|+.+|+|.+|........  ..|.+|+.+|.|++.++..++   ..|     +.++.||+.+...    ...++|.|+
T Consensus         1 m~viIiG~G~ig~~~a~~L~--~~g~~v~vid~~~~~~~~~~~---~~~-----~~~~~gd~~~~~~l~~~~~~~a~~vi   70 (453)
T PRK09496          1 MKIIIVGAGQVGYTLAENLS--GENNDVTVIDTDEERLRRLQD---RLD-----VRTVVGNGSSPDVLREAGAEDADLLI   70 (453)
T ss_pred             CEEEEECCCHHHHHHHHHHH--hCCCcEEEEECCHHHHHHHHh---hcC-----EEEEEeCCCCHHHHHHcCCCcCCEEE
Confidence            47999999988876555443  368999999999998776654   233     6788899865321    245789887


Q ss_pred             hhhhccCChhHHHHHHHHHHhhccCCcEEEEee
Q 042119          208 LAALVGMSKEEKLTILGHIRKYMKDGGILLVRS  240 (286)
Q Consensus       208 ~aalvg~~~~~k~~vl~~l~~~l~pgg~lv~r~  240 (286)
                      .+.-    .......+....+.+.|.-.++++.
T Consensus        71 ~~~~----~~~~n~~~~~~~r~~~~~~~ii~~~   99 (453)
T PRK09496         71 AVTD----SDETNMVACQIAKSLFGAPTTIARV   99 (453)
T ss_pred             EecC----ChHHHHHHHHHHHHhcCCCeEEEEE
Confidence            6532    1234445556677776777777764

>PRK12480 D-lactate dehydrogenase; Provisional

Probab=95.08  E-value=0.083  Score=50.18  Aligned_cols=89  Identities=19%  Similarity=0.214  Sum_probs=60.1

Q ss_pred             CCCEEEEeccCCChhhHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEccccchhhcCCCcceeehh
Q 042119          130 QPKKVAFVGSGPMPLTSIIMAKHHLTSTHFDNFDIDEAANDVARSIVASDAEFEGRMKFLTRDIMEVKEQLGEYDCIFLA  209 (286)
Q Consensus       130 ~~~~VL~IG~G~lp~tai~lA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~g~l~~~i~f~~~D~~~~~~~l~~fD~V~~a  209 (286)
                      .+++|..||+|.+|.+....++  ..|.+|+++|+++....         +    .+++ +.+   +...+...|+|+++
T Consensus       145 ~g~~VgIIG~G~IG~~vA~~L~--~~G~~V~~~d~~~~~~~---------~----~~~~-~~~---l~ell~~aDiVil~  205 (330)
T PRK12480        145 KNMTVAIIGTGRIGAATAKIYA--GFGATITAYDAYPNKDL---------D----FLTY-KDS---VKEAIKDADIISLH  205 (330)
T ss_pred             CCCEEEEECCCHHHHHHHHHHH--hCCCEEEEEeCChhHhh---------h----hhhc-cCC---HHHHHhcCCEEEEe
Confidence            5789999999999987555555  37899999999975421         1    0111 122   23334578999876


Q ss_pred             hhccCChhHHHHHHHHHHhhccCCcEEEEe
Q 042119          210 ALVGMSKEEKLTILGHIRKYMKDGGILLVR  239 (286)
Q Consensus       210 alvg~~~~~k~~vl~~l~~~l~pgg~lv~r  239 (286)
                      .-  .+.+.+.-+-+.+.+.|+||+++|--
T Consensus       206 lP--~t~~t~~li~~~~l~~mk~gavlIN~  233 (330)
T PRK12480        206 VP--ANKESYHLFDKAMFDHVKKGAILVNA  233 (330)
T ss_pred             CC--CcHHHHHHHhHHHHhcCCCCcEEEEc
Confidence            53  23345666778899999998866653

>PRK12769 putative oxidoreductase Fe-S binding subunit; Reviewed

Probab=95.08  E-value=0.029  Score=57.83  Aligned_cols=74  Identities=23%  Similarity=0.405  Sum_probs=49.8

Q ss_pred             CCCCEEEEeccCCChhhHHHHHhhcCCCcEEEEEeCChH-----------------HHHHHHHHHHhcCCCCCCeEEEEc
Q 042119          129 VQPKKVAFVGSGPMPLTSIIMAKHHLTSTHFDNFDIDEA-----------------ANDVARSIVASDAEFEGRMKFLTR  191 (286)
Q Consensus       129 ~~~~~VL~IG~G~lp~tai~lA~~~~~g~~V~~iDid~~-----------------ai~~Ar~~~~~~g~l~~~i~f~~~  191 (286)
                      ..+++|+.||+||.|+++...+.+  .|.+|+.+|.++.                 .++.-.+.+++.|     ++|..+
T Consensus       325 ~~~~~VaIIGaGpAGLsaA~~L~~--~G~~V~V~E~~~~~GG~l~~gip~~~l~~~~~~~~~~~~~~~G-----v~~~~~  397 (654)
T PRK12769        325 KSDKRVAIIGAGPAGLACADVLAR--NGVAVTVYDRHPEIGGLLTFGIPAFKLDKSLLARRREIFSAMG-----IEFELN  397 (654)
T ss_pred             cCCCEEEEECCCHHHHHHHHHHHH--CCCeEEEEecCCCCCceeeecCCCccCCHHHHHHHHHHHHHCC-----eEEECC
Confidence            357899999999999999887763  7899999997643                 4444455566666     444432


Q ss_pred             -----cccchhhcCCCcceeehhh
Q 042119          192 -----DIMEVKEQLGEYDCIFLAA  210 (286)
Q Consensus       192 -----D~~~~~~~l~~fD~V~~aa  210 (286)
                           |+ .+.....+||.||++.
T Consensus       398 ~~v~~~i-~~~~~~~~~DavilAt  420 (654)
T PRK12769        398 CEVGKDI-SLESLLEDYDAVFVGV  420 (654)
T ss_pred             CEeCCcC-CHHHHHhcCCEEEEeC
Confidence                 21 1111124799999864

>PRK01747 mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltransferase/FAD-dependent cmnm(5)s(2)U34 oxidoreductase; Reviewed

Probab=95.07  E-value=0.073  Score=54.92  Aligned_cols=111  Identities=18%  Similarity=0.225  Sum_probs=72.6

Q ss_pred             CCCCEEEEeccCCChhhHHHHHhhc------CC-----CcEEEEEeCCh--------------HHHHHHHHHHHh-----
Q 042119          129 VQPKKVAFVGSGPMPLTSIIMAKHH------LT-----STHFDNFDIDE--------------AANDVARSIVAS-----  178 (286)
Q Consensus       129 ~~~~~VL~IG~G~lp~tai~lA~~~------~~-----g~~V~~iDid~--------------~ai~~Ar~~~~~-----  178 (286)
                      .+.-+|+++|=| +|+..+...+..      -+     ..+++.+|.+|              +..++++++.+.     
T Consensus        56 ~~~~~i~e~gfG-~G~N~l~~~~~~~~~~~~~~~~~~~~l~~~s~E~~p~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~  134 (662)
T PRK01747         56 RRRFVIAETGFG-TGLNFLATWQAFDQFRQRHPPARLKRLHFISFEKFPLTRADLARAHQHWPELAPLAEQLQAQWPLLL  134 (662)
T ss_pred             CCcEEEEecCcc-hHHHHHHHHHHHHHhhhhCCCCCCceEEEEEEECCCCCHHHHHHHHhhCcccHHHHHHHHHhCCccC
Confidence            344799999999 588666555421      12     35899999865              223334444432     


Q ss_pred             cCC----C-CC--CeEEEEccccchhhcCC-Ccceeehhhhcc-CChhH-HHHHHHHHHhhccCCcEEEEee
Q 042119          179 DAE----F-EG--RMKFLTRDIMEVKEQLG-EYDCIFLAALVG-MSKEE-KLTILGHIRKYMKDGGILLVRS  240 (286)
Q Consensus       179 ~g~----l-~~--~i~f~~~D~~~~~~~l~-~fD~V~~aalvg-~~~~~-k~~vl~~l~~~l~pgg~lv~r~  240 (286)
                      .|.    + +.  ++++..||+.+....+. .||++|++.+-. .+++. -.++|.+|+++++|||+++.-+
T Consensus       135 ~g~~~~~~~~~~~~l~l~~gd~~~~~~~~~~~~d~~~lD~FsP~~np~~W~~~~~~~l~~~~~~~~~~~t~t  206 (662)
T PRK01747        135 PGCHRLLFDDGRVTLDLWFGDANELLPQLDARADAWFLDGFAPAKNPDMWSPNLFNALARLARPGATLATFT  206 (662)
T ss_pred             CCceEEEecCCcEEEEEEecCHHHHHHhccccccEEEeCCCCCccChhhccHHHHHHHHHHhCCCCEEEEee
Confidence            120    0 12  44577899988777664 599999998752 11111 2579999999999999999754

>PRK10669 putative cation:proton antiport protein; Provisional

Probab=95.06  E-value=0.13  Score=52.08  Aligned_cols=95  Identities=11%  Similarity=0.044  Sum_probs=65.2

Q ss_pred             CCEEEEeccCCChhhHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEccccchh----hcCCCccee
Q 042119          131 PKKVAFVGSGPMPLTSIIMAKHHLTSTHFDNFDIDEAANDVARSIVASDAEFEGRMKFLTRDIMEVK----EQLGEYDCI  206 (286)
Q Consensus       131 ~~~VL~IG~G~lp~tai~lA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~g~l~~~i~f~~~D~~~~~----~~l~~fD~V  206 (286)
                      ..+|+.+|+|+.|......-+  ..|..|+.||.|++.++.+++    .|     .+.++||+.+..    ...+++|.|
T Consensus       417 ~~hiiI~G~G~~G~~la~~L~--~~g~~vvvId~d~~~~~~~~~----~g-----~~~i~GD~~~~~~L~~a~i~~a~~v  485 (558)
T PRK10669        417 CNHALLVGYGRVGSLLGEKLL--AAGIPLVVIETSRTRVDELRE----RG-----IRAVLGNAANEEIMQLAHLDCARWL  485 (558)
T ss_pred             CCCEEEECCChHHHHHHHHHH--HCCCCEEEEECCHHHHHHHHH----CC-----CeEEEcCCCCHHHHHhcCccccCEE
Confidence            379999999998876544433  367899999999999888765    34     578899998732    234578877


Q ss_pred             ehhhhccCChhHHHHHHHHHHhhccCCcEEEEee
Q 042119          207 FLAALVGMSKEEKLTILGHIRKYMKDGGILLVRS  240 (286)
Q Consensus       207 ~~aalvg~~~~~k~~vl~~l~~~l~pgg~lv~r~  240 (286)
                      +.+..  -+ .+...+...+ +...|+..++.|.
T Consensus       486 iv~~~--~~-~~~~~iv~~~-~~~~~~~~iiar~  515 (558)
T PRK10669        486 LLTIP--NG-YEAGEIVASA-REKRPDIEIIARA  515 (558)
T ss_pred             EEEcC--Ch-HHHHHHHHHH-HHHCCCCeEEEEE
Confidence            75421  11 2222344444 5568899999885

>cd08299 alcohol_DH_class_I_II_IV class I, II, IV alcohol dehydrogenases

Probab=95.05  E-value=0.13  Score=49.13  Aligned_cols=100  Identities=17%  Similarity=0.192  Sum_probs=64.1

Q ss_pred             cCCCCCCEEEEeccCCChhhHHHHHhhcCCCc-EEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEcc--ccc-hh--hc
Q 042119          126 NGVVQPKKVAFVGSGPMPLTSIIMAKHHLTST-HFDNFDIDEAANDVARSIVASDAEFEGRMKFLTRD--IME-VK--EQ  199 (286)
Q Consensus       126 ~~~~~~~~VL~IG~G~lp~tai~lA~~~~~g~-~V~~iDid~~ai~~Ar~~~~~~g~l~~~i~f~~~D--~~~-~~--~~  199 (286)
                      ....++.+|+..|+|++|..++.+|+.  .|+ +|+.+|.+++..+.+++    +| ...-+.....+  ..+ +.  ..
T Consensus       186 ~~~~~g~~VlV~G~g~vG~~~~~~a~~--~G~~~Vi~~~~~~~~~~~a~~----lG-a~~~i~~~~~~~~~~~~v~~~~~  258 (373)
T cd08299         186 AKVTPGSTCAVFGLGGVGLSAIMGCKA--AGASRIIAVDINKDKFAKAKE----LG-ATECINPQDYKKPIQEVLTEMTD  258 (373)
T ss_pred             cCCCCCCEEEEECCCHHHHHHHHHHHH--cCCCeEEEEcCCHHHHHHHHH----cC-CceEecccccchhHHHHHHHHhC
Confidence            345788999999999999999999994  678 89999999988777744    46 22222222111  111 11  11


Q ss_pred             CCCcceeehhhhccCChhHHHHHHHH-HHhhccCCcEEEEee
Q 042119          200 LGEYDCIFLAALVGMSKEEKLTILGH-IRKYMKDGGILLVRS  240 (286)
Q Consensus       200 l~~fD~V~~aalvg~~~~~k~~vl~~-l~~~l~pgg~lv~r~  240 (286)
                       ..+|+|+-+.  |    .. ..+.. +...+++||+++.-.
T Consensus       259 -~~~d~vld~~--g----~~-~~~~~~~~~~~~~~G~~v~~g  292 (373)
T cd08299         259 -GGVDFSFEVI--G----RL-DTMKAALASCHEGYGVSVIVG  292 (373)
T ss_pred             -CCCeEEEECC--C----Cc-HHHHHHHHhhccCCCEEEEEc
Confidence             3699888643  2    11 23444 444556888888765

NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. This group includes alcohol dehydrogenases corresponding to mammalian classes I, II, IV. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically

>PRK09599 6-phosphogluconate dehydrogenase-like protein; Reviewed

Probab=95.03  E-value=0.16  Score=47.32  Aligned_cols=92  Identities=12%  Similarity=0.178  Sum_probs=57.9

Q ss_pred             CEEEEeccCCChhhH-HHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEccccchhhcCCCcceeehhh
Q 042119          132 KKVAFVGSGPMPLTS-IIMAKHHLTSTHFDNFDIDEAANDVARSIVASDAEFEGRMKFLTRDIMEVKEQLGEYDCIFLAA  210 (286)
Q Consensus       132 ~~VL~IG~G~lp~ta-i~lA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~g~l~~~i~f~~~D~~~~~~~l~~fD~V~~aa  210 (286)
                      ++|.+||+|.+|..- ..|++   .|.+|+.+|++++..+...    ..|.     + ...+..++.......|+|+++.
T Consensus         1 m~Ig~IGlG~MG~~mA~~L~~---~g~~v~v~dr~~~~~~~~~----~~g~-----~-~~~~~~e~~~~~~~~dvvi~~v   67 (301)
T PRK09599          1 MQLGMIGLGRMGGNMARRLLR---GGHEVVGYDRNPEAVEALA----EEGA-----T-GADSLEELVAKLPAPRVVWLMV   67 (301)
T ss_pred             CEEEEEcccHHHHHHHHHHHH---CCCeEEEEECCHHHHHHHH----HCCC-----e-ecCCHHHHHhhcCCCCEEEEEe
Confidence            379999999888643 23333   6889999999998876553    2451     2 1234434333322468888653


Q ss_pred             hccCChhHHHHHHHHHHhhccCCcEEEEe
Q 042119          211 LVGMSKEEKLTILGHIRKYMKDGGILLVR  239 (286)
Q Consensus       211 lvg~~~~~k~~vl~~l~~~l~pgg~lv~r  239 (286)
                      --   .+.-..+++.+...+++|.+++.-
T Consensus        68 ~~---~~~~~~v~~~l~~~l~~g~ivid~   93 (301)
T PRK09599         68 PA---GEITDATIDELAPLLSPGDIVIDG   93 (301)
T ss_pred             cC---CcHHHHHHHHHHhhCCCCCEEEeC
Confidence            21   123345778888889888766654

>cd05278 FDH_like Formaldehyde dehydrogenases

Probab=95.03  E-value=0.1  Score=48.35  Aligned_cols=100  Identities=22%  Similarity=0.305  Sum_probs=65.6

Q ss_pred             CCCCCCEEEEeccCCChhhHHHHHhhcCCCc-EEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEccccc-hhh--cCCC
Q 042119          127 GVVQPKKVAFVGSGPMPLTSIIMAKHHLTST-HFDNFDIDEAANDVARSIVASDAEFEGRMKFLTRDIME-VKE--QLGE  202 (286)
Q Consensus       127 ~~~~~~~VL~IG~G~lp~tai~lA~~~~~g~-~V~~iDid~~ai~~Ar~~~~~~g~l~~~i~f~~~D~~~-~~~--~l~~  202 (286)
                      ...++.+||..|+|++|..++.+|+.  .|. .|++++.+++..+.++++    | ...-+.....+..+ +..  .-.+
T Consensus       164 ~~~~~~~VlI~g~g~vg~~~iqlak~--~g~~~v~~~~~~~~~~~~~~~~----g-~~~vi~~~~~~~~~~i~~~~~~~~  236 (347)
T cd05278         164 GIKPGSTVAVIGAGPVGLCAVAGARL--LGAARIIAVDSNPERLDLAKEA----G-ATDIINPKNGDIVEQILELTGGRG  236 (347)
T ss_pred             CCCCCCEEEEECCCHHHHHHHHHHHH--cCCCEEEEEeCCHHHHHHHHHh----C-CcEEEcCCcchHHHHHHHHcCCCC
Confidence            34678999999999899999999994  574 899999998887776653    4 11112222222111 111  1136


Q ss_pred             cceeehhhhccCChhHHHHHHHHHHhhccCCcEEEEee
Q 042119          203 YDCIFLAALVGMSKEEKLTILGHIRKYMKDGGILLVRS  240 (286)
Q Consensus       203 fD~V~~aalvg~~~~~k~~vl~~l~~~l~pgg~lv~r~  240 (286)
                      +|+++-+.  +    . ...+....+.|+++|+++.-.
T Consensus       237 ~d~vld~~--g----~-~~~~~~~~~~l~~~G~~v~~g  267 (347)
T cd05278         237 VDCVIEAV--G----F-EETFEQAVKVVRPGGTIANVG  267 (347)
T ss_pred             CcEEEEcc--C----C-HHHHHHHHHHhhcCCEEEEEc
Confidence            99988542  2    1 147778889999999988653

Formaldehyde dehydrogenase (FDH) is a member of the zinc-dependent/medium chain alcohol dehydrogenase family. Formaldehyde dehydrogenase (aka ADH3) may be the ancestral form of alcohol dehydrogenase, which evolved to detoxify formaldehyde. This CD contains glutathione dependant FDH, glutathione independent FDH, and related alcohol dehydrogenases. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. Unlike typical FDH, Pseudomonas putida aldehyde-dismutating FDH (PFDH) is glutathione-independent. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typicall

>PLN02688 pyrroline-5-carboxylate reductase

Probab=95.02  E-value=0.13  Score=46.54  Aligned_cols=86  Identities=23%  Similarity=0.310  Sum_probs=55.0

Q ss_pred             CEEEEeccCCChhhHHH-HHhhcCCCc----EEEEE-eCChHHHHHHHHHHHhcCCCCCCeEEEEccccchhhcCCCcce
Q 042119          132 KKVAFVGSGPMPLTSII-MAKHHLTST----HFDNF-DIDEAANDVARSIVASDAEFEGRMKFLTRDIMEVKEQLGEYDC  205 (286)
Q Consensus       132 ~~VL~IG~G~lp~tai~-lA~~~~~g~----~V~~i-Did~~ai~~Ar~~~~~~g~l~~~i~f~~~D~~~~~~~l~~fD~  205 (286)
                      ++|.+||+|.+|.+-.. |.+   .|.    +|+.+ |.+++..+.+    ...|     ++. ..|..+.   ..+.|+
T Consensus         1 ~kI~~IG~G~mG~a~a~~L~~---~g~~~~~~i~v~~~r~~~~~~~~----~~~g-----~~~-~~~~~e~---~~~aDv   64 (266)
T PLN02688          1 FRVGFIGAGKMAEAIARGLVA---SGVVPPSRISTADDSNPARRDVF----QSLG-----VKT-AASNTEV---VKSSDV   64 (266)
T ss_pred             CeEEEECCcHHHHHHHHHHHH---CCCCCcceEEEEeCCCHHHHHHH----HHcC-----CEE-eCChHHH---HhcCCE
Confidence            47999999988754322 222   333    88999 9998875443    2346     222 2333222   246899


Q ss_pred             eehhhhccCChhHHHHHHHHHHhhccCCcEEE
Q 042119          206 IFLAALVGMSKEEKLTILGHIRKYMKDGGILL  237 (286)
Q Consensus       206 V~~aalvg~~~~~k~~vl~~l~~~l~pgg~lv  237 (286)
                      ||++.-    .+...+++..+...++||.+++
T Consensus        65 Vil~v~----~~~~~~vl~~l~~~~~~~~~iI   92 (266)
T PLN02688         65 IILAVK----PQVVKDVLTELRPLLSKDKLLV   92 (266)
T ss_pred             EEEEEC----cHHHHHHHHHHHhhcCCCCEEE
Confidence            998742    3567788888888888887655

>PF02826 2-Hacid_dh_C: D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain; InterPro: IPR006140 A number of NAD-dependent 2-hydroxyacid dehydrogenases which seem to be specific for the D-isomer of their substrate have been shown to be functionally and structurally related

Probab=95.02  E-value=0.047  Score=46.99  Aligned_cols=92  Identities=17%  Similarity=0.205  Sum_probs=59.3

Q ss_pred             CCCCEEEEeccCCChhhHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEccccchhhcCCCcceeeh
Q 042119          129 VQPKKVAFVGSGPMPLTSIIMAKHHLTSTHFDNFDIDEAANDVARSIVASDAEFEGRMKFLTRDIMEVKEQLGEYDCIFL  208 (286)
Q Consensus       129 ~~~~~VL~IG~G~lp~tai~lA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~g~l~~~i~f~~~D~~~~~~~l~~fD~V~~  208 (286)
                      -.+++|..||.|.+|.....+++  ..|.+|+++|.++..-.    .....+     +++  .+..++   +...|+|++
T Consensus        34 l~g~tvgIiG~G~IG~~vA~~l~--~fG~~V~~~d~~~~~~~----~~~~~~-----~~~--~~l~el---l~~aDiv~~   97 (178)
T PF02826_consen   34 LRGKTVGIIGYGRIGRAVARRLK--AFGMRVIGYDRSPKPEE----GADEFG-----VEY--VSLDEL---LAQADIVSL   97 (178)
T ss_dssp             STTSEEEEESTSHHHHHHHHHHH--HTT-EEEEEESSCHHHH----HHHHTT-----EEE--SSHHHH---HHH-SEEEE
T ss_pred             cCCCEEEEEEEcCCcCeEeeeee--cCCceeEEecccCChhh----hccccc-----cee--eehhhh---cchhhhhhh
Confidence            46899999999999988888887  37999999999998755    222233     222  344333   346899887


Q ss_pred             hhhccCChhHHHHHHHHHHhhccCCcEEEE
Q 042119          209 AALVGMSKEEKLTILGHIRKYMKDGGILLV  238 (286)
Q Consensus       209 aalvg~~~~~k~~vl~~l~~~l~pgg~lv~  238 (286)
                      +.-.  +.+.+.-+=++..+.||+|++||-
T Consensus        98 ~~pl--t~~T~~li~~~~l~~mk~ga~lvN  125 (178)
T PF02826_consen   98 HLPL--TPETRGLINAEFLAKMKPGAVLVN  125 (178)
T ss_dssp             -SSS--STTTTTSBSHHHHHTSTTTEEEEE
T ss_pred             hhcc--ccccceeeeeeeeeccccceEEEe
Confidence            6422  222222233456778899887765

All contain a glycine-rich region located in the central section of these enzymes, this region corresponds to the NAD-binding domain. The catalytic domain is described in IPR006139 from INTERPRO ; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0048037 cofactor binding, 0055114 oxidation-reduction process; PDB: 3JTM_A 3NAQ_B 3N7U_J 3KB6_B 3GG9_A 1QP8_B 2CUK_C 2W2L_D 2W2K_A 1WWK_A ....

>PRK13771 putative alcohol dehydrogenase; Provisional

Probab=95.01  E-value=0.23  Score=45.83  Aligned_cols=97  Identities=23%  Similarity=0.326  Sum_probs=66.6

Q ss_pred             cCCCCCCEEEEecc-CCChhhHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEccccchhhcCCCcc
Q 042119          126 NGVVQPKKVAFVGS-GPMPLTSIIMAKHHLTSTHFDNFDIDEAANDVARSIVASDAEFEGRMKFLTRDIMEVKEQLGEYD  204 (286)
Q Consensus       126 ~~~~~~~~VL~IG~-G~lp~tai~lA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~g~l~~~i~f~~~D~~~~~~~l~~fD  204 (286)
                      ....++.+|+..|+ |++|..++.+|++  .|++|++++.+++..+.++++ ...= +..+ .+    ..++. .++.+|
T Consensus       158 ~~~~~~~~vlI~g~~g~~g~~~~~la~~--~g~~vi~~~~~~~~~~~~~~~-~~~~-~~~~-~~----~~~v~-~~~~~d  227 (334)
T PRK13771        158 AGVKKGETVLVTGAGGGVGIHAIQVAKA--LGAKVIAVTSSESKAKIVSKY-ADYV-IVGS-KF----SEEVK-KIGGAD  227 (334)
T ss_pred             cCCCCCCEEEEECCCccHHHHHHHHHHH--cCCEEEEEeCCHHHHHHHHHH-HHHh-cCch-hH----HHHHH-hcCCCc
Confidence            34577899999999 8999999999994  799999999999999888776 2111 1111 11    11111 123689


Q ss_pred             eeehhhhccCChhHHHHHHHHHHhhccCCcEEEEee
Q 042119          205 CIFLAALVGMSKEEKLTILGHIRKYMKDGGILLVRS  240 (286)
Q Consensus       205 ~V~~aalvg~~~~~k~~vl~~l~~~l~pgg~lv~r~  240 (286)
                      +++-+.  +    .  ..+..+.+.++++|.++.-.
T Consensus       228 ~~ld~~--g----~--~~~~~~~~~l~~~G~~v~~g  255 (334)
T PRK13771        228 IVIETV--G----T--PTLEESLRSLNMGGKIIQIG  255 (334)
T ss_pred             EEEEcC--C----h--HHHHHHHHHHhcCCEEEEEe
Confidence            888542  2    1  24667888899999988754

>cd05296 GH4_P_beta_glucosidase Glycoside Hydrolases Family 4; Phospho-beta-glucosidase

Probab=95.01  E-value=0.23  Score=48.76  Aligned_cols=77  Identities=25%  Similarity=0.339  Sum_probs=54.5

Q ss_pred             CEEEEeccCCChhhHHHHHh-----hcCCCcEEEEEeCC-hHHHHH----HHHHHHhcCCCCCCeEEEEccccchhhcCC
Q 042119          132 KKVAFVGSGPMPLTSIIMAK-----HHLTSTHFDNFDID-EAANDV----ARSIVASDAEFEGRMKFLTRDIMEVKEQLG  201 (286)
Q Consensus       132 ~~VL~IG~G~lp~tai~lA~-----~~~~g~~V~~iDid-~~ai~~----Ar~~~~~~g~l~~~i~f~~~D~~~~~~~l~  201 (286)
                      .+|.+||+|.. +|...+..     ..+++.+++-+||| ++.++.    +++++++.|   ..+++...  .+....+.
T Consensus         1 ~KI~iIGaGS~-~tp~li~~l~~~~~~l~~~ei~L~Did~~~rl~~v~~~~~~~~~~~~---~~~~v~~t--~d~~~al~   74 (419)
T cd05296           1 MKLTIIGGGSS-YTPELIEGLIRRYEELPVTELVLVDIDEEEKLEIVGALAKRMVKKAG---LPIKVHLT--TDRREALE   74 (419)
T ss_pred             CEEEEECCchH-hHHHHHHHHHhccccCCCCEEEEecCChHHHHHHHHHHHHHHHHhhC---CCeEEEEe--CCHHHHhC
Confidence            37999999975 77555433     13677999999999 888754    777777777   24565543  23455667


Q ss_pred             CcceeehhhhccC
Q 042119          202 EYDCIFLAALVGM  214 (286)
Q Consensus       202 ~fD~V~~aalvg~  214 (286)
                      +.|+|+....+|.
T Consensus        75 gadfVi~~~~vg~   87 (419)
T cd05296          75 GADFVFTQIRVGG   87 (419)
T ss_pred             CCCEEEEEEeeCC
Confidence            8899998887743

Some bacteria simultaneously translocate and phosphorylate disaccharides via the phosphoenolpyruvate-dependent phosphotransferase system (PEP-PTS). After translocation, these phospho-disaccharides may be hydrolyzed by the GH4 glycoside hydrolases such as the phospho-beta-glucosidases. Other organisms (such as archaea and Thermotoga maritima ) lack the PEP-PTS system, but have several enzymes normally associated with the PEP-PTS operon. The 6-phospho-beta-glucosidase from Thermotoga maritima hydrolylzes cellobiose 6-phosphate (6P) into glucose-6P and glucose, in an NAD+ and Mn2+ dependent fashion. The Escherichia coli 6-phospho-beta-glucosidase (also called celF) hydrolyzes a variety of phospho-beta-glucosides including cellobiose-6P, salicin-6P, arbutin-6P, and gentobiose-6P. Phospho-beta-glucosidases are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein

>PRK02705 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=94.97  E-value=0.21  Score=48.99  Aligned_cols=74  Identities=9%  Similarity=0.098  Sum_probs=48.8

Q ss_pred             EEEEeccCCChhhHHHHHhhcCCCcEEEEEeCChHHH-HHHHHHHHhcCCCCCCeEEEEccccch---hhcCCCcceeeh
Q 042119          133 KVAFVGSGPMPLTSIIMAKHHLTSTHFDNFDIDEAAN-DVARSIVASDAEFEGRMKFLTRDIMEV---KEQLGEYDCIFL  208 (286)
Q Consensus       133 ~VL~IG~G~lp~tai~lA~~~~~g~~V~~iDid~~ai-~~Ar~~~~~~g~l~~~i~f~~~D~~~~---~~~l~~fD~V~~  208 (286)
                      +|++||.|+.|+++..++.  ..|.+|+++|..+..- ......+...|     +++..+.-.+.   ...+.++|+|+.
T Consensus         2 ~v~viG~G~sG~s~a~~l~--~~G~~V~~~D~~~~~~~~~~~~~l~~~g-----i~~~~g~~~~~~~~~~~~~~~d~vv~   74 (459)
T PRK02705          2 IAHVIGLGRSGIAAARLLK--AQGWEVVVSDRNDSPELLERQQELEQEG-----ITVKLGKPLELESFQPWLDQPDLVVV   74 (459)
T ss_pred             eEEEEccCHHHHHHHHHHH--HCCCEEEEECCCCchhhHHHHHHHHHcC-----CEEEECCccchhhhhHHhhcCCEEEE
Confidence            7999999999999887776  4899999999876532 11122344445     56665543221   123457999988


Q ss_pred             hhhcc
Q 042119          209 AALVG  213 (286)
Q Consensus       209 aalvg  213 (286)
                      +.-+.
T Consensus        75 s~gi~   79 (459)
T PRK02705         75 SPGIP   79 (459)
T ss_pred             CCCCC
Confidence            76553

>PRK06545 prephenate dehydrogenase; Validated

Probab=94.92  E-value=0.06  Score=51.50  Aligned_cols=92  Identities=23%  Similarity=0.261  Sum_probs=57.0

Q ss_pred             CEEEEeccCCChhhHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEccccchhhcCCCcceeehhhh
Q 042119          132 KKVAFVGSGPMPLTSIIMAKHHLTSTHFDNFDIDEAANDVARSIVASDAEFEGRMKFLTRDIMEVKEQLGEYDCIFLAAL  211 (286)
Q Consensus       132 ~~VL~IG~G~lp~tai~lA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~g~l~~~i~f~~~D~~~~~~~l~~fD~V~~aal  211 (286)
                      ++|.+||+|.+|.+.....+  ..|..+..+|.|+...+.++.  ...| ..+.   ...|.   .......|+||++.-
T Consensus         1 ~~I~iIG~GliG~siA~~L~--~~G~~v~i~~~~~~~~~~~~a--~~~~-~~~~---~~~~~---~~~~~~aDlVilavP   69 (359)
T PRK06545          1 RTVLIVGLGLIGGSLALAIK--AAGPDVFIIGYDPSAAQLARA--LGFG-VIDE---LAADL---QRAAAEADLIVLAVP   69 (359)
T ss_pred             CeEEEEEeCHHHHHHHHHHH--hcCCCeEEEEeCCCHHHHHHH--hcCC-CCcc---cccCH---HHHhcCCCEEEEeCC
Confidence            47999999999876554444  255677777777766555442  1233 1111   11222   223357899998864


Q ss_pred             ccCChhHHHHHHHHHHh-hccCCcEEEE
Q 042119          212 VGMSKEEKLTILGHIRK-YMKDGGILLV  238 (286)
Q Consensus       212 vg~~~~~k~~vl~~l~~-~l~pgg~lv~  238 (286)
                      .    .....+++++.+ .++||.++..
T Consensus        70 ~----~~~~~vl~~l~~~~l~~~~ivtD   93 (359)
T PRK06545         70 V----DATAALLAELADLELKPGVIVTD   93 (359)
T ss_pred             H----HHHHHHHHHHhhcCCCCCcEEEe
Confidence            3    566788899987 4888865543

>KOG1501 consensus Arginine N-methyltransferase [General function prediction only]

Probab=94.86  E-value=0.071  Score=52.45  Aligned_cols=63  Identities=19%  Similarity=0.325  Sum_probs=51.9

Q ss_pred             CCEEEEeccCCChhhHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEccccchh
Q 042119          131 PKKVAFVGSGPMPLTSIIMAKHHLTSTHFDNFDIDEAANDVARSIVASDAEFEGRMKFLTRDIMEVK  197 (286)
Q Consensus       131 ~~~VL~IG~G~lp~tai~lA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~g~l~~~i~f~~~D~~~~~  197 (286)
                      .-.||+||+|+ |+-+++-+++  .+-.||+++.=..|.+.||++..+.| .+++|+.+.---+++.
T Consensus        67 kv~vLdigtGT-GLLSmMAvra--gaD~vtA~EvfkPM~d~arkI~~kng-~SdkI~vInkrStev~  129 (636)
T KOG1501|consen   67 KVFVLDIGTGT-GLLSMMAVRA--GADSVTACEVFKPMVDLARKIMHKNG-MSDKINVINKRSTEVK  129 (636)
T ss_pred             eEEEEEccCCc-cHHHHHHHHh--cCCeEEeehhhchHHHHHHHHHhcCC-Cccceeeeccccceee
Confidence            34789999996 7777766662  35679999999999999999999999 8999999876655544

>cd08264 Zn_ADH_like2 Alcohol dehydrogenases of the MDR family

Probab=94.84  E-value=0.16  Score=46.70  Aligned_cols=95  Identities=15%  Similarity=0.150  Sum_probs=62.2

Q ss_pred             hcCCCCCCEEEEecc-CCChhhHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEccc-cchhhcCCC
Q 042119          125 ENGVVQPKKVAFVGS-GPMPLTSIIMAKHHLTSTHFDNFDIDEAANDVARSIVASDAEFEGRMKFLTRDI-MEVKEQLGE  202 (286)
Q Consensus       125 ~~~~~~~~~VL~IG~-G~lp~tai~lA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~g~l~~~i~f~~~D~-~~~~~~l~~  202 (286)
                      .....++.+|+.+|+ |++|..++.+|++  .|++|++++.+        +.++.+| ...  .+...+. ..+......
T Consensus       157 ~~~~~~g~~vlI~g~~g~vg~~~~~~a~~--~G~~v~~~~~~--------~~~~~~g-~~~--~~~~~~~~~~l~~~~~~  223 (325)
T cd08264         157 TAGLGPGETVVVFGASGNTGIFAVQLAKM--MGAEVIAVSRK--------DWLKEFG-ADE--VVDYDEVEEKVKEITKM  223 (325)
T ss_pred             hcCCCCCCEEEEECCCchHHHHHHHHHHH--cCCeEEEEeHH--------HHHHHhC-CCe--eecchHHHHHHHHHhCC
Confidence            345678899999997 9999999999994  78999998732        3334466 211  1111111 111111156


Q ss_pred             cceeehhhhccCChhHHHHHHHHHHhhccCCcEEEEee
Q 042119          203 YDCIFLAALVGMSKEEKLTILGHIRKYMKDGGILLVRS  240 (286)
Q Consensus       203 fD~V~~aalvg~~~~~k~~vl~~l~~~l~pgg~lv~r~  240 (286)
                      +|+|+-+.  +    .  ..+....+.|+++|.++.-.
T Consensus       224 ~d~vl~~~--g----~--~~~~~~~~~l~~~g~~v~~g  253 (325)
T cd08264         224 ADVVINSL--G----S--SFWDLSLSVLGRGGRLVTFG  253 (325)
T ss_pred             CCEEEECC--C----H--HHHHHHHHhhccCCEEEEEe
Confidence            89988542  2    2  36778899999999998754

This group resembles the zinc-dependent alcohol dehydrogenases of the medium chain dehydrogenase family. However, this subgroup does not contain the characteristic catalytic zinc site. Also, it contains an atypical structural zinc-binding pattern: DxxCxxCxxxxxxxC. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the clo

>cd08234 threonine_DH_like L-threonine dehydrogenase

Probab=94.82  E-value=0.25  Score=45.53  Aligned_cols=98  Identities=18%  Similarity=0.255  Sum_probs=66.5

Q ss_pred             cCCCCCCEEEEeccCCChhhHHHHHhhcCCCcE-EEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEccccch----hhcC
Q 042119          126 NGVVQPKKVAFVGSGPMPLTSIIMAKHHLTSTH-FDNFDIDEAANDVARSIVASDAEFEGRMKFLTRDIMEV----KEQL  200 (286)
Q Consensus       126 ~~~~~~~~VL~IG~G~lp~tai~lA~~~~~g~~-V~~iDid~~ai~~Ar~~~~~~g~l~~~i~f~~~D~~~~----~~~l  200 (286)
                      ....++.+||.+|+|.+|..++.+|++  .|.+ |+.++.+++..+.+++    .| ..   .++..+-.+.    ....
T Consensus       155 ~~~~~g~~vlI~g~g~vg~~~~~la~~--~G~~~v~~~~~~~~~~~~~~~----~g-~~---~~~~~~~~~~~~~~~~~~  224 (334)
T cd08234         155 LGIKPGDSVLVFGAGPIGLLLAQLLKL--NGASRVTVAEPNEEKLELAKK----LG-AT---ETVDPSREDPEAQKEDNP  224 (334)
T ss_pred             cCCCCCCEEEEECCCHHHHHHHHHHHH--cCCcEEEEECCCHHHHHHHHH----hC-Ce---EEecCCCCCHHHHHHhcC
Confidence            345788999999999889999999984  6777 8999999988777644    45 22   2222211111    1122


Q ss_pred             CCcceeehhhhccCChhHHHHHHHHHHhhccCCcEEEEee
Q 042119          201 GEYDCIFLAALVGMSKEEKLTILGHIRKYMKDGGILLVRS  240 (286)
Q Consensus       201 ~~fD~V~~aalvg~~~~~k~~vl~~l~~~l~pgg~lv~r~  240 (286)
                      ..+|+++-+.  +     ....+....+.|+++|.++.-.
T Consensus       225 ~~vd~v~~~~--~-----~~~~~~~~~~~l~~~G~~v~~g  257 (334)
T cd08234         225 YGFDVVIEAT--G-----VPKTLEQAIEYARRGGTVLVFG  257 (334)
T ss_pred             CCCcEEEECC--C-----ChHHHHHHHHHHhcCCEEEEEe
Confidence            4699998542  1     1246777889999999998754

L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine, via NAD(H)-dependent oxidation. THD is a member of the zinc-requiring, medium chain NAD(H)-dependent alcohol dehydrogenase family (MDR). MDRs have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose.

>cd05298 GH4_GlvA_pagL_like Glycoside Hydrolases Family 4; GlvA- and pagL-like glycosidases

Probab=94.82  E-value=0.14  Score=50.66  Aligned_cols=77  Identities=19%  Similarity=0.328  Sum_probs=54.9

Q ss_pred             CEEEEeccCCChhhHHHHHh---h--cCCCcEEEEEeCChHHHHH----HHHHHHhcCCCCCCeEEEEccccchhhcCCC
Q 042119          132 KKVAFVGSGPMPLTSIIMAK---H--HLTSTHFDNFDIDEAANDV----ARSIVASDAEFEGRMKFLTRDIMEVKEQLGE  202 (286)
Q Consensus       132 ~~VL~IG~G~lp~tai~lA~---~--~~~g~~V~~iDid~~ai~~----Ar~~~~~~g~l~~~i~f~~~D~~~~~~~l~~  202 (286)
                      .||.+||+|.. +|...+-.   .  .+++.+|+-+|||+++++.    |++.+++.|   ..+++...  ++....+.+
T Consensus         1 ~KI~iIGaGS~-~tp~li~~l~~~~~~l~~~ei~L~DId~~rl~~v~~l~~~~~~~~g---~~~~v~~T--tdr~eAl~g   74 (437)
T cd05298           1 FKIVIAGGGST-YTPGIVKSLLDRKEDFPLRELVLYDIDAERQEKVAEAVKILFKENY---PEIKFVYT--TDPEEAFTD   74 (437)
T ss_pred             CeEEEECCcHH-HHHHHHHHHHhCcccCCCCEEEEECCCHHHHHHHHHHHHHHHHhhC---CCeEEEEE--CCHHHHhCC
Confidence            48999999975 77554322   1  3678999999999998887    555566666   24555433  345667788


Q ss_pred             cceeehhhhccC
Q 042119          203 YDCIFLAALVGM  214 (286)
Q Consensus       203 fD~V~~aalvg~  214 (286)
                      .|+|+....||.
T Consensus        75 ADfVi~~irvGg   86 (437)
T cd05298          75 ADFVFAQIRVGG   86 (437)
T ss_pred             CCEEEEEeeeCC
Confidence            999998887864

Bacillus subtilis GlvA and Clostridium acetobutylicum pagL are 6-phospho-alpha-glucosidase, catalyzing the hydrolysis of alpha-glucopyranoside bonds to release glucose from oligosaccharides. The substrate specificities of other members of this subgroup are unknown. Some bacteria simultaneously translocate and phosphorylate disaccharides via the phosphoenolpyruvate-dependent phosphotransferase system (PEP_PTS). After translocation, these phospho-disaccharides may be hydrolyzed by the GH4 glycoside hydrolases, which include 6-phospho-beta-glucosidases, 6-phospho-alpha-glucosidases, alpha-glucosidases/alpha-glucuronidases (only from Thermotoga), and alpha-galactosidases. Members of this subfamily are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductas

>TIGR02853 spore_dpaA dipicolinic acid synthetase, A subunit

Probab=94.82  E-value=0.11  Score=48.45  Aligned_cols=91  Identities=9%  Similarity=0.023  Sum_probs=58.4

Q ss_pred             CCCCEEEEeccCCChhhHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEccccchhhcCCCcceeeh
Q 042119          129 VQPKKVAFVGSGPMPLTSIIMAKHHLTSTHFDNFDIDEAANDVARSIVASDAEFEGRMKFLTRDIMEVKEQLGEYDCIFL  208 (286)
Q Consensus       129 ~~~~~VL~IG~G~lp~tai~lA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~g~l~~~i~f~~~D~~~~~~~l~~fD~V~~  208 (286)
                      -.+++|+.||.|.+|.+....++  ..|++|+.+|.+++..+.+.    ..|.     ...  +..++...+.++|+|+.
T Consensus       149 l~gk~v~IiG~G~iG~avA~~L~--~~G~~V~v~~R~~~~~~~~~----~~g~-----~~~--~~~~l~~~l~~aDiVin  215 (287)
T TIGR02853       149 IHGSNVMVLGFGRTGMTIARTFS--ALGARVFVGARSSADLARIT----EMGL-----IPF--PLNKLEEKVAEIDIVIN  215 (287)
T ss_pred             CCCCEEEEEcChHHHHHHHHHHH--HCCCEEEEEeCCHHHHHHHH----HCCC-----eee--cHHHHHHHhccCCEEEE
Confidence            46799999999998887777666  36899999999987654432    3441     111  12233344568999997


Q ss_pred             hhhccCChhHHHHHHHHHHhhccCCcEEEEe
Q 042119          209 AALVGMSKEEKLTILGHIRKYMKDGGILLVR  239 (286)
Q Consensus       209 aalvg~~~~~k~~vl~~l~~~l~pgg~lv~r  239 (286)
                      +.-.++       +-....+.|+|+++++--
T Consensus       216 t~P~~i-------i~~~~l~~~k~~aliIDl  239 (287)
T TIGR02853       216 TIPALV-------LTADVLSKLPKHAVIIDL  239 (287)
T ss_pred             CCChHH-------hCHHHHhcCCCCeEEEEe
Confidence            642211       113455678887766543

This predicted Rossman fold-containing protein is the A subunit of dipicolinic acid synthetase as found in most, though not all, endospore-forming low-GC Gram-positive bacteria; it is absent in Clostridium. The B subunit is represented by TIGR02852. This protein is also known as SpoVFA.

>PRK06718 precorrin-2 dehydrogenase; Reviewed

Probab=94.80  E-value=0.18  Score=44.59  Aligned_cols=105  Identities=10%  Similarity=0.217  Sum_probs=56.5

Q ss_pred             CCCCEEEEeccCCChhhHH-HHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEccccchhhcCCCcceee
Q 042119          129 VQPKKVAFVGSGPMPLTSI-IMAKHHLTSTHFDNFDIDEAANDVARSIVASDAEFEGRMKFLTRDIMEVKEQLGEYDCIF  207 (286)
Q Consensus       129 ~~~~~VL~IG~G~lp~tai-~lA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~g~l~~~i~f~~~D~~~~~~~l~~fD~V~  207 (286)
                      -.+++||.||+|.++...+ .|.+   .|++|+.|+.+.  .+...+++.. |    ++.+...+..  ..++.++|+|+
T Consensus         8 l~~k~vLVIGgG~va~~ka~~Ll~---~ga~V~VIs~~~--~~~l~~l~~~-~----~i~~~~~~~~--~~~l~~adlVi   75 (202)
T PRK06718          8 LSNKRVVIVGGGKVAGRRAITLLK---YGAHIVVISPEL--TENLVKLVEE-G----KIRWKQKEFE--PSDIVDAFLVI   75 (202)
T ss_pred             cCCCEEEEECCCHHHHHHHHHHHH---CCCeEEEEcCCC--CHHHHHHHhC-C----CEEEEecCCC--hhhcCCceEEE
Confidence            3578999999998876544 3433   679999996542  1222232221 2    4666554332  33567899988


Q ss_pred             hhhhccCChhHHHHHHHHHHhhccCCcEEEEeecCcceeeecccC
Q 042119          208 LAALVGMSKEEKLTILGHIRKYMKDGGILLVRSAKGARAFLYPVV  252 (286)
Q Consensus       208 ~aalvg~~~~~k~~vl~~l~~~l~pgg~lv~r~~~g~r~~lyp~v  252 (286)
                      .+.-   +.+.- ..   +....+.+..+-+-+......|..|.+
T Consensus        76 aaT~---d~elN-~~---i~~~a~~~~lvn~~d~~~~~~f~~Pa~  113 (202)
T PRK06718         76 AATN---DPRVN-EQ---VKEDLPENALFNVITDAESGNVVFPSA  113 (202)
T ss_pred             EcCC---CHHHH-HH---HHHHHHhCCcEEECCCCccCeEEEeeE
Confidence            6532   22222 22   233323444333333333445777754

>cd08236 sugar_DH NAD(P)-dependent sugar dehydrogenases

Probab=94.80  E-value=0.13  Score=47.65  Aligned_cols=100  Identities=22%  Similarity=0.293  Sum_probs=65.7

Q ss_pred             CCCCCCEEEEeccCCChhhHHHHHhhcCCCcE-EEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEccccchhhcC--CCc
Q 042119          127 GVVQPKKVAFVGSGPMPLTSIIMAKHHLTSTH-FDNFDIDEAANDVARSIVASDAEFEGRMKFLTRDIMEVKEQL--GEY  203 (286)
Q Consensus       127 ~~~~~~~VL~IG~G~lp~tai~lA~~~~~g~~-V~~iDid~~ai~~Ar~~~~~~g~l~~~i~f~~~D~~~~~~~l--~~f  203 (286)
                      ...++.+|+..|+|.+|..++.+|++  .|.+ |++++.+++..+..++    .| ...-+........++....  .++
T Consensus       156 ~~~~~~~vlI~g~g~~g~~~~~lA~~--~G~~~v~~~~~~~~~~~~l~~----~g-~~~~~~~~~~~~~~~~~~~~~~~~  228 (343)
T cd08236         156 GITLGDTVVVIGAGTIGLLAIQWLKI--LGAKRVIAVDIDDEKLAVARE----LG-ADDTINPKEEDVEKVRELTEGRGA  228 (343)
T ss_pred             CCCCCCEEEEECCCHHHHHHHHHHHH--cCCCEEEEEcCCHHHHHHHHH----cC-CCEEecCccccHHHHHHHhCCCCC
Confidence            45678899999999999999999984  7887 9999999887665543    45 2211222111111111112  249


Q ss_pred             ceeehhhhccCChhHHHHHHHHHHhhccCCcEEEEee
Q 042119          204 DCIFLAALVGMSKEEKLTILGHIRKYMKDGGILLVRS  240 (286)
Q Consensus       204 D~V~~aalvg~~~~~k~~vl~~l~~~l~pgg~lv~r~  240 (286)
                      |+|+-+.  +    . ...+..+.+.|+++|+++.-.
T Consensus       229 d~vld~~--g----~-~~~~~~~~~~l~~~G~~v~~g  258 (343)
T cd08236         229 DLVIEAA--G----S-PATIEQALALARPGGKVVLVG  258 (343)
T ss_pred             CEEEECC--C----C-HHHHHHHHHHhhcCCEEEEEc
Confidence            9998542  1    1 236678889999999988754

This group contains proteins identified as sorbitol dehydrogenases and other sugar dehydrogenases of the medium-chain dehydrogenase/reductase family (MDR), which includes zinc-dependent alcohol dehydrogenase and related proteins. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Related proteins include threonine dehydrogenase, formaldehyde dehydrogenase, and butanediol dehydrogenase. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast

>PRK12809 putative oxidoreductase Fe-S binding subunit; Reviewed

Probab=94.77  E-value=0.043  Score=56.51  Aligned_cols=75  Identities=23%  Similarity=0.369  Sum_probs=50.0

Q ss_pred             CCCEEEEeccCCChhhHHHHHhhcCCCcEEEEEeCCh-----------------HHHHHHHHHHHhcCCCCCCeEEEEcc
Q 042119          130 QPKKVAFVGSGPMPLTSIIMAKHHLTSTHFDNFDIDE-----------------AANDVARSIVASDAEFEGRMKFLTRD  192 (286)
Q Consensus       130 ~~~~VL~IG~G~lp~tai~lA~~~~~g~~V~~iDid~-----------------~ai~~Ar~~~~~~g~l~~~i~f~~~D  192 (286)
                      .+++|+.||+||.|+++...+++  .|.+|+.+|..+                 +.++.-.+.+...|     ++|..+.
T Consensus       309 ~~kkVaIIG~GpaGl~aA~~L~~--~G~~Vtv~e~~~~~GG~l~~gip~~~l~~~~~~~~~~~~~~~G-----v~~~~~~  381 (639)
T PRK12809        309 RSEKVAVIGAGPAGLGCADILAR--AGVQVDVFDRHPEIGGMLTFGIPPFKLDKTVLSQRREIFTAMG-----IDFHLNC  381 (639)
T ss_pred             CCCEEEEECcCHHHHHHHHHHHH--cCCcEEEEeCCCCCCCeeeccCCcccCCHHHHHHHHHHHHHCC-----eEEEcCC
Confidence            47999999999999998887763  689999999765                 33444455666666     3443322


Q ss_pred             c----cchhhcCCCcceeehhhh
Q 042119          193 I----MEVKEQLGEYDCIFLAAL  211 (286)
Q Consensus       193 ~----~~~~~~l~~fD~V~~aal  211 (286)
                      .    ..+......||.||++.-
T Consensus       382 ~v~~~~~~~~l~~~~DaV~latG  404 (639)
T PRK12809        382 EIGRDITFSDLTSEYDAVFIGVG  404 (639)
T ss_pred             ccCCcCCHHHHHhcCCEEEEeCC
Confidence            1    111111246999998653

>cd08284 FDH_like_2 Glutathione-dependent formaldehyde dehydrogenase related proteins, child 2

Probab=94.73  E-value=0.17  Score=46.98  Aligned_cols=99  Identities=18%  Similarity=0.207  Sum_probs=65.4

Q ss_pred             CCCCCCEEEEeccCCChhhHHHHHhhcCCCc-EEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEcccc-chhh--cCCC
Q 042119          127 GVVQPKKVAFVGSGPMPLTSIIMAKHHLTST-HFDNFDIDEAANDVARSIVASDAEFEGRMKFLTRDIM-EVKE--QLGE  202 (286)
Q Consensus       127 ~~~~~~~VL~IG~G~lp~tai~lA~~~~~g~-~V~~iDid~~ai~~Ar~~~~~~g~l~~~i~f~~~D~~-~~~~--~l~~  202 (286)
                      ...++++||..|+|++|..++.+|+.  .|. +|++++.+++..+.+++    +|.  .-+.....+.. .+..  .-.+
T Consensus       164 ~~~~~~~vlI~g~g~vg~~~~~~a~~--~g~~~v~~~~~~~~~~~~~~~----~g~--~~~~~~~~~~~~~l~~~~~~~~  235 (344)
T cd08284         164 QVRPGDTVAVIGCGPVGLCAVLSAQV--LGAARVFAVDPVPERLERAAA----LGA--EPINFEDAEPVERVREATEGRG  235 (344)
T ss_pred             CCccCCEEEEECCcHHHHHHHHHHHH--cCCceEEEEcCCHHHHHHHHH----hCC--eEEecCCcCHHHHHHHHhCCCC
Confidence            34678999999999999999999994  785 89999998877766555    452  11111111111 1111  1136


Q ss_pred             cceeehhhhccCChhHHHHHHHHHHhhccCCcEEEEee
Q 042119          203 YDCIFLAALVGMSKEEKLTILGHIRKYMKDGGILLVRS  240 (286)
Q Consensus       203 fD~V~~aalvg~~~~~k~~vl~~l~~~l~pgg~lv~r~  240 (286)
                      +|+++-+..      . ...+....+.|+++|.++.-.
T Consensus       236 ~dvvid~~~------~-~~~~~~~~~~l~~~g~~v~~g  266 (344)
T cd08284         236 ADVVLEAVG------G-AAALDLAFDLVRPGGVISSVG  266 (344)
T ss_pred             CCEEEECCC------C-HHHHHHHHHhcccCCEEEEEC
Confidence            999885431      1 236778888999999988654

Glutathione-dependent formaldehyde dehydrogenases (FDHs) are members of the zinc-dependent/medium chain alcohol dehydrogenase family. Formaldehyde dehydrogenase (FDH) is a member of the zinc-dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD to formate and NADH. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. These tetrameric FDHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains and a structural zinc in a lobe of the catalytic domain. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typical

>PF01210 NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus; InterPro: IPR011128 NAD-dependent glycerol-3-phosphate dehydrogenase (GPDH) catalyses the interconversion of dihydroxyacetone phosphate and L-glycerol-3-phosphate

Probab=94.71  E-value=0.098  Score=44.02  Aligned_cols=101  Identities=21%  Similarity=0.287  Sum_probs=62.0

Q ss_pred             EEEEeccCCChhhHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHH---hcCC--CCCCeEEEEccccchhhcCCCcceee
Q 042119          133 KVAFVGSGPMPLTSIIMAKHHLTSTHFDNFDIDEAANDVARSIVA---SDAE--FEGRMKFLTRDIMEVKEQLGEYDCIF  207 (286)
Q Consensus       133 ~VL~IG~G~lp~tai~lA~~~~~g~~V~~iDid~~ai~~Ar~~~~---~~g~--l~~~i~f~~~D~~~~~~~l~~fD~V~  207 (286)
                      +|..||+|.+|.+......  ..|.+|+-+..+++.++.-++.-.   .++.  +..++.+ +.|..+   .+++.|+|+
T Consensus         1 KI~ViGaG~~G~AlA~~la--~~g~~V~l~~~~~~~~~~i~~~~~n~~~~~~~~l~~~i~~-t~dl~~---a~~~ad~Ii   74 (157)
T PF01210_consen    1 KIAVIGAGNWGTALAALLA--DNGHEVTLWGRDEEQIEEINETRQNPKYLPGIKLPENIKA-TTDLEE---ALEDADIII   74 (157)
T ss_dssp             EEEEESSSHHHHHHHHHHH--HCTEEEEEETSCHHHHHHHHHHTSETTTSTTSBEETTEEE-ESSHHH---HHTT-SEEE
T ss_pred             CEEEECcCHHHHHHHHHHH--HcCCEEEEEeccHHHHHHHHHhCCCCCCCCCcccCccccc-ccCHHH---HhCcccEEE
Confidence            6899999998877655554  378999999999976665444211   0110  1235543 455433   335789998


Q ss_pred             hhhhccCChhHHHHHHHHHHhhccCCcEEEEeecCcc
Q 042119          208 LAALVGMSKEEKLTILGHIRKYMKDGGILLVRSAKGA  244 (286)
Q Consensus       208 ~aalvg~~~~~k~~vl~~l~~~l~pgg~lv~r~~~g~  244 (286)
                      ++.-.    ..-..+++++.++++++..++.- .+|+
T Consensus        75 iavPs----~~~~~~~~~l~~~l~~~~~ii~~-~KG~  106 (157)
T PF01210_consen   75 IAVPS----QAHREVLEQLAPYLKKGQIIISA-TKGF  106 (157)
T ss_dssp             E-S-G----GGHHHHHHHHTTTSHTT-EEEET-S-SE
T ss_pred             ecccH----HHHHHHHHHHhhccCCCCEEEEe-cCCc
Confidence            76432    33457999999999877777654 3554

This family represents the N-terminal NAD-binding domain [].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0046168 glycerol-3-phosphate catabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 1YJ8_B 2PLA_A 1WPQ_B 1X0V_A 1X0X_A 1BG6_A 1TXG_B 1N1G_A 1M67_A 1JDJ_A ....

>PRK05442 malate dehydrogenase; Provisional

Probab=94.70  E-value=0.17  Score=48.15  Aligned_cols=107  Identities=14%  Similarity=0.207  Sum_probs=64.8

Q ss_pred             CCCCEEEEecc-CCChhhHHHHH-hhcCCC----cEEEEEeCChH---HHHHHHHHHHhc-CCCCCCeEEEEccccchhh
Q 042119          129 VQPKKVAFVGS-GPMPLTSIIMA-KHHLTS----THFDNFDIDEA---ANDVARSIVASD-AEFEGRMKFLTRDIMEVKE  198 (286)
Q Consensus       129 ~~~~~VL~IG~-G~lp~tai~lA-~~~~~g----~~V~~iDid~~---ai~~Ar~~~~~~-g~l~~~i~f~~~D~~~~~~  198 (286)
                      +.|.+|..||+ |..|.+..+.. ....-+    .+++-+|+.+.   +-..+..+.... . +..++++..+|    ..
T Consensus         2 ~~~~KV~IiGaaG~VG~~~a~~l~~~~~~~~~~~~el~LiDi~~~~~~~~g~a~Dl~~~~~~-~~~~~~i~~~~----y~   76 (326)
T PRK05442          2 KAPVRVAVTGAAGQIGYSLLFRIASGDMLGKDQPVILQLLEIPPALKALEGVVMELDDCAFP-LLAGVVITDDP----NV   76 (326)
T ss_pred             CCCcEEEEECCCcHHHHHHHHHHHhhhhcCCCCccEEEEEecCCcccccceeehhhhhhhhh-hcCCcEEecCh----HH
Confidence            56889999998 99998855432 211111    27999999654   566677766654 3 22345554333    24


Q ss_pred             cCCCcceeehhhhc----cCChhH----HHHHHH----HHHhhccCCcEEEEee
Q 042119          199 QLGEYDCIFLAALV----GMSKEE----KLTILG----HIRKYMKDGGILLVRS  240 (286)
Q Consensus       199 ~l~~fD~V~~aalv----g~~~~~----k~~vl~----~l~~~l~pgg~lv~r~  240 (286)
                      ++.+.|+|++.+-+    |++..+    ..++++    .+.++-+|.|++++-+
T Consensus        77 ~~~daDiVVitaG~~~k~g~tR~dll~~Na~i~~~i~~~i~~~~~~~~iiivvs  130 (326)
T PRK05442         77 AFKDADVALLVGARPRGPGMERKDLLEANGAIFTAQGKALNEVAARDVKVLVVG  130 (326)
T ss_pred             HhCCCCEEEEeCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEEeC
Confidence            56789999887754    443322    223444    4444444688888765

>PRK03369 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=94.69  E-value=0.086  Score=52.53  Aligned_cols=72  Identities=13%  Similarity=0.068  Sum_probs=51.4

Q ss_pred             CCCCEEEEeccCCChhhHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEccccchhhcCCCcceeeh
Q 042119          129 VQPKKVAFVGSGPMPLTSIIMAKHHLTSTHFDNFDIDEAANDVARSIVASDAEFEGRMKFLTRDIMEVKEQLGEYDCIFL  208 (286)
Q Consensus       129 ~~~~~VL~IG~G~lp~tai~lA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~g~l~~~i~f~~~D~~~~~~~l~~fD~V~~  208 (286)
                      ..+++|+.+|.|+.|++++.+.+  ..|++|++.|..++..+.    +++.|     +.+..++.  ....+.++|+|+.
T Consensus        10 ~~~~~v~V~G~G~sG~aa~~~L~--~~G~~v~~~D~~~~~~~~----l~~~g-----~~~~~~~~--~~~~l~~~D~VV~   76 (488)
T PRK03369         10 LPGAPVLVAGAGVTGRAVLAALT--RFGARPTVCDDDPDALRP----HAERG-----VATVSTSD--AVQQIADYALVVT   76 (488)
T ss_pred             cCCCeEEEEcCCHHHHHHHHHHH--HCCCEEEEEcCCHHHHHH----HHhCC-----CEEEcCcc--hHhHhhcCCEEEE
Confidence            46789999999999999998776  388999999987765332    33345     45554433  1233457899998


Q ss_pred             hhhcc
Q 042119          209 AALVG  213 (286)
Q Consensus       209 aalvg  213 (286)
                      +.-+.
T Consensus        77 SpGi~   81 (488)
T PRK03369         77 SPGFR   81 (488)
T ss_pred             CCCCC
Confidence            87663

>cd05290 LDH_3 A subgroup of L-lactate dehydrogenases

Probab=94.66  E-value=0.3  Score=45.99  Aligned_cols=104  Identities=16%  Similarity=0.184  Sum_probs=65.2

Q ss_pred             EEEEeccCCChhhHHHHHhhcCCCcEEEEEeCChH-HHHHHHHHHHhcCCCC-CCeEEEEccccchhhcCCCcceeehhh
Q 042119          133 KVAFVGSGPMPLTSIIMAKHHLTSTHFDNFDIDEA-ANDVARSIVASDAEFE-GRMKFLTRDIMEVKEQLGEYDCIFLAA  210 (286)
Q Consensus       133 ~VL~IG~G~lp~tai~lA~~~~~g~~V~~iDid~~-ai~~Ar~~~~~~g~l~-~~i~f~~~D~~~~~~~l~~fD~V~~aa  210 (286)
                      +|..||+|..|.+.....-......+++-+|++++ +-..|..+........ .++++..+|.    .++.+.|+|++.+
T Consensus         1 Ki~IIGaG~VG~~~a~~l~~~~~~~elvL~Di~~~~a~g~a~DL~~~~~~~~~~~~~i~~~~y----~~~~~aDivvita   76 (307)
T cd05290           1 KLVVIGAGHVGSAVLNYALALGLFSEIVLIDVNEGVAEGEALDFHHATALTYSTNTKIRAGDY----DDCADADIIVITA   76 (307)
T ss_pred             CEEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCcchhhHHHHHHHhhhccCCCCCEEEEECCH----HHhCCCCEEEECC
Confidence            58899999999887443321233457999999866 4566666666544221 3577777663    3556899998877


Q ss_pred             hc----cCCh------hHHHHHHHHHHhhc---cCCcEEEEee
Q 042119          211 LV----GMSK------EEKLTILGHIRKYM---KDGGILLVRS  240 (286)
Q Consensus       211 lv----g~~~------~~k~~vl~~l~~~l---~pgg~lv~r~  240 (286)
                      -+    ||+.      ..-.++++++.+.+   .|+|++++-+
T Consensus        77 G~~~kpg~tr~R~dll~~N~~I~~~i~~~i~~~~p~~i~ivvs  119 (307)
T cd05290          77 GPSIDPGNTDDRLDLAQTNAKIIREIMGNITKVTKEAVIILIT  119 (307)
T ss_pred             CCCCCCCCCchHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEec
Confidence            54    5542      22334555555444   3678877754

L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed of some bacterial LDHs from firmicutes, gammaproteobacteria, and actinobacteria. Vertebrate LDHs are non-allosteric, but some bacterial LDHs are activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenase, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.

>COG4301 Uncharacterized conserved protein [Function unknown]

Probab=94.65  E-value=0.63  Score=42.88  Aligned_cols=111  Identities=15%  Similarity=0.189  Sum_probs=78.8

Q ss_pred             CCCCCEEEEeccCCChhhHHHHHhhc--CCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEccccchhhcCCCcc-
Q 042119          128 VVQPKKVAFVGSGPMPLTSIIMAKHH--LTSTHFDNFDIDEAANDVARSIVASDAEFEGRMKFLTRDIMEVKEQLGEYD-  204 (286)
Q Consensus       128 ~~~~~~VL~IG~G~lp~tai~lA~~~--~~g~~V~~iDid~~ai~~Ar~~~~~~g~l~~~i~f~~~D~~~~~~~l~~fD-  204 (286)
                      +..+....++|||.--=|.+.+-...  ..-.+.+-||+|...++-.-+-+.+.- .+-.|.-++||-......+...- 
T Consensus        76 ~~g~~~lveLGsGns~Ktr~Llda~~~~~~~~ryvpiDv~a~iL~~ta~ai~~~y-~~l~v~~l~~~~~~~La~~~~~~~  154 (321)
T COG4301          76 ITGACTLVELGSGNSTKTRILLDALAHRGSLLRYVPIDVSASILRATATAILREY-PGLEVNALCGDYELALAELPRGGR  154 (321)
T ss_pred             hhCcceEEEecCCccHHHHHHHHHhhhcCCcceeeeecccHHHHHHHHHHHHHhC-CCCeEeehhhhHHHHHhcccCCCe
Confidence            35689999999998766666654311  123789999999998876555444433 24578889999755444443332 


Q ss_pred             --eeehhhhccC-ChhHHHHHHHHHHhhccCCcEEEEe
Q 042119          205 --CIFLAALVGM-SKEEKLTILGHIRKYMKDGGILLVR  239 (286)
Q Consensus       205 --~V~~aalvg~-~~~~k~~vl~~l~~~l~pgg~lv~r  239 (286)
                        ++|.-+.+|. ++++...++.+++..|+||-.+++-
T Consensus       155 Rl~~flGStlGN~tp~e~~~Fl~~l~~a~~pGd~~LlG  192 (321)
T COG4301         155 RLFVFLGSTLGNLTPGECAVFLTQLRGALRPGDYFLLG  192 (321)
T ss_pred             EEEEEecccccCCChHHHHHHHHHHHhcCCCcceEEEe
Confidence              4566666644 7788999999999999999998884

>PRK14806 bifunctional cyclohexadienyl dehydrogenase/ 3-phosphoshikimate 1-carboxyvinyltransferase; Provisional

Probab=94.64  E-value=0.17  Score=52.83  Aligned_cols=90  Identities=17%  Similarity=0.168  Sum_probs=60.5

Q ss_pred             CEEEEeccCCChhhHHHHHhhcCCC--cEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEccccchhhcCCCcceeehh
Q 042119          132 KKVAFVGSGPMPLTSIIMAKHHLTS--THFDNFDIDEAANDVARSIVASDAEFEGRMKFLTRDIMEVKEQLGEYDCIFLA  209 (286)
Q Consensus       132 ~~VL~IG~G~lp~tai~lA~~~~~g--~~V~~iDid~~ai~~Ar~~~~~~g~l~~~i~f~~~D~~~~~~~l~~fD~V~~a  209 (286)
                      ++|.+||+|.+|.+.....++  .|  .+|+++|.+++..+.+++    .| ...  . ...|   ....+...|+||++
T Consensus         4 ~~I~IIG~G~mG~ala~~l~~--~G~~~~V~~~d~~~~~~~~a~~----~g-~~~--~-~~~~---~~~~~~~aDvVila   70 (735)
T PRK14806          4 GRVVVIGLGLIGGSFAKALRE--RGLAREVVAVDRRAKSLELAVS----LG-VID--R-GEED---LAEAVSGADVIVLA   70 (735)
T ss_pred             cEEEEEeeCHHHHHHHHHHHh--cCCCCEEEEEECChhHHHHHHH----CC-CCC--c-ccCC---HHHHhcCCCEEEEC
Confidence            689999999988765555442  34  579999999988776653    45 211  0 1122   22234578999987


Q ss_pred             hhccCChhHHHHHHHHHHhhccCCcEEEE
Q 042119          210 ALVGMSKEEKLTILGHIRKYMKDGGILLV  238 (286)
Q Consensus       210 alvg~~~~~k~~vl~~l~~~l~pgg~lv~  238 (286)
                      .-.    ....++++.+.+.++++.+++.
T Consensus        71 vp~----~~~~~vl~~l~~~~~~~~ii~d   95 (735)
T PRK14806         71 VPV----LAMEKVLADLKPLLSEHAIVTD   95 (735)
T ss_pred             CCH----HHHHHHHHHHHHhcCCCcEEEE
Confidence            532    4567888899998888766553

>TIGR02356 adenyl_thiF thiazole biosynthesis adenylyltransferase ThiF, E

Probab=94.60  E-value=0.41  Score=42.13  Aligned_cols=107  Identities=12%  Similarity=0.131  Sum_probs=56.9

Q ss_pred             CCCEEEEeccCCChhhHH-HHHhhcCCC-cEEEEEeCC-------------------hHHHHHHHHHHHhcCCCCCCeEE
Q 042119          130 QPKKVAFVGSGPMPLTSI-IMAKHHLTS-THFDNFDID-------------------EAANDVARSIVASDAEFEGRMKF  188 (286)
Q Consensus       130 ~~~~VL~IG~G~lp~tai-~lA~~~~~g-~~V~~iDid-------------------~~ai~~Ar~~~~~~g~l~~~i~f  188 (286)
                      ..++|+.||||.+|-... .|++   .| .+++.+|.|                   ..-.+.+.+.+++.. -.-+++.
T Consensus        20 ~~~~VlviG~GglGs~ia~~La~---~Gv~~i~lvD~d~ve~sNL~Rq~l~~~~diG~~Ka~~~~~~l~~~n-p~v~i~~   95 (202)
T TIGR02356        20 LNSHVLIIGAGGLGSPAALYLAG---AGVGTIVIVDDDHVDLSNLQRQILFTEEDVGRPKVEVAAQRLRELN-SDIQVTA   95 (202)
T ss_pred             cCCCEEEECCCHHHHHHHHHHHH---cCCCeEEEecCCEEcccchhhhhccChhhCCChHHHHHHHHHHHhC-CCCEEEE
Confidence            468999999997665433 3333   55 489999988                   233344444555544 1234444


Q ss_pred             EEccccc--hhhcCCCcceeehhhhccCChhHHHHHHHHHHhhccCCcEEEEeecCccee
Q 042119          189 LTRDIME--VKEQLGEYDCIFLAALVGMSKEEKLTILGHIRKYMKDGGILLVRSAKGARA  246 (286)
Q Consensus       189 ~~~D~~~--~~~~l~~fD~V~~aalvg~~~~~k~~vl~~l~~~l~pgg~lv~r~~~g~r~  246 (286)
                      +...+.+  +...+.+||+|+.+.-   +.+.+. .+.+..+..  +-.++.-...|...
T Consensus        96 ~~~~i~~~~~~~~~~~~D~Vi~~~d---~~~~r~-~l~~~~~~~--~ip~i~~~~~g~~G  149 (202)
T TIGR02356        96 LKERVTAENLELLINNVDLVLDCTD---NFATRY-LINDACVAL--GTPLISAAVVGFGG  149 (202)
T ss_pred             ehhcCCHHHHHHHHhCCCEEEECCC---CHHHHH-HHHHHHHHc--CCCEEEEEeccCeE
Confidence            4434322  2234568999986632   123443 344443332  23344444444444

coli subfamily. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with the Escherichia. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the more widely distributed clade of ThiF proteins such found in E. coli.

>PRK06249 2-dehydropantoate 2-reductase; Provisional

Probab=94.60  E-value=0.097  Score=48.94  Aligned_cols=97  Identities=9%  Similarity=0.142  Sum_probs=56.0

Q ss_pred             CCCCEEEEeccCCChhhHHH-HHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCC----CCCCeEEEEccccchhhcCCCc
Q 042119          129 VQPKKVAFVGSGPMPLTSII-MAKHHLTSTHFDNFDIDEAANDVARSIVASDAE----FEGRMKFLTRDIMEVKEQLGEY  203 (286)
Q Consensus       129 ~~~~~VL~IG~G~lp~tai~-lA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~g~----l~~~i~f~~~D~~~~~~~l~~f  203 (286)
                      ...++|+.||+|.+|.+--. |++   .|..|+.+..++.  +.    +...|.    ...+..+....+.+.+.....|
T Consensus         3 ~~~m~I~IiG~GaiG~~lA~~L~~---~g~~V~~~~r~~~--~~----~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~   73 (313)
T PRK06249          3 SETPRIGIIGTGAIGGFYGAMLAR---AGFDVHFLLRSDY--EA----VRENGLQVDSVHGDFHLPPVQAYRSAEDMPPC   73 (313)
T ss_pred             CcCcEEEEECCCHHHHHHHHHHHH---CCCeEEEEEeCCH--HH----HHhCCeEEEeCCCCeeecCceEEcchhhcCCC
Confidence            34579999999988865333 333   6789999999863  21    233341    0011111111111112234579


Q ss_pred             ceeehhhhccCChhHHHHHHHHHHhhccCCcEEEE
Q 042119          204 DCIFLAALVGMSKEEKLTILGHIRKYMKDGGILLV  238 (286)
Q Consensus       204 D~V~~aalvg~~~~~k~~vl~~l~~~l~pgg~lv~  238 (286)
                      |+|+++.= .   .+-.++++.+...++|++.++.
T Consensus        74 D~vilavK-~---~~~~~~~~~l~~~~~~~~~iv~  104 (313)
T PRK06249         74 DWVLVGLK-T---TANALLAPLIPQVAAPDAKVLL  104 (313)
T ss_pred             CEEEEEec-C---CChHhHHHHHhhhcCCCCEEEE
Confidence            99998732 2   1224678888888999887654

>PRK09496 trkA potassium transporter peripheral membrane component; Reviewed

Probab=94.58  E-value=0.36  Score=46.96  Aligned_cols=97  Identities=13%  Similarity=0.101  Sum_probs=62.4

Q ss_pred             CCCCEEEEeccCCChhhHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEccccchh----hcCCCcc
Q 042119          129 VQPKKVAFVGSGPMPLTSIIMAKHHLTSTHFDNFDIDEAANDVARSIVASDAEFEGRMKFLTRDIMEVK----EQLGEYD  204 (286)
Q Consensus       129 ~~~~~VL~IG~G~lp~tai~lA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~g~l~~~i~f~~~D~~~~~----~~l~~fD  204 (286)
                      ...++|+.+|+|.+|.+....-.  ..|..|+.+|.|++.++..++.    +   ..+.++.||+.+..    ....++|
T Consensus       229 ~~~~~iiIiG~G~~g~~l~~~L~--~~~~~v~vid~~~~~~~~~~~~----~---~~~~~i~gd~~~~~~L~~~~~~~a~  299 (453)
T PRK09496        229 KPVKRVMIVGGGNIGYYLAKLLE--KEGYSVKLIERDPERAEELAEE----L---PNTLVLHGDGTDQELLEEEGIDEAD  299 (453)
T ss_pred             CCCCEEEEECCCHHHHHHHHHHH--hCCCeEEEEECCHHHHHHHHHH----C---CCCeEEECCCCCHHHHHhcCCccCC
Confidence            34689999999988776444333  2588999999999988776653    2   24678999987532    1345788


Q ss_pred             eeehhhhccCChhHHHHHHHHHHhhccCCcEEEEe
Q 042119          205 CIFLAALVGMSKEEKLTILGHIRKYMKDGGILLVR  239 (286)
Q Consensus       205 ~V~~aalvg~~~~~k~~vl~~l~~~l~pgg~lv~r  239 (286)
                      .|+...  +-  ....-+...+.+.+.+. .++++
T Consensus       300 ~vi~~~--~~--~~~n~~~~~~~~~~~~~-~ii~~  329 (453)
T PRK09496        300 AFIALT--ND--DEANILSSLLAKRLGAK-KVIAL  329 (453)
T ss_pred             EEEECC--CC--cHHHHHHHHHHHHhCCC-eEEEE
Confidence            887432  11  12223344455666655 45554

>cd08274 MDR9 Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family

Probab=94.54  E-value=0.4  Score=44.46  Aligned_cols=97  Identities=14%  Similarity=0.175  Sum_probs=63.3

Q ss_pred             hcCCCCCCEEEEecc-CCChhhHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEcccc---ch-hhc
Q 042119          125 ENGVVQPKKVAFVGS-GPMPLTSIIMAKHHLTSTHFDNFDIDEAANDVARSIVASDAEFEGRMKFLTRDIM---EV-KEQ  199 (286)
Q Consensus       125 ~~~~~~~~~VL~IG~-G~lp~tai~lA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~g~l~~~i~f~~~D~~---~~-~~~  199 (286)
                      .....++.+||..|+ |++|..++.+|++  .|++|++++.+. ..+.    ++..| . +  .+...+-.   +. ...
T Consensus       172 ~~~~~~g~~vlI~g~~g~ig~~~~~~a~~--~g~~vi~~~~~~-~~~~----~~~~g-~-~--~~~~~~~~~~~~~~~~~  240 (350)
T cd08274         172 RAGVGAGETVLVTGASGGVGSALVQLAKR--RGAIVIAVAGAA-KEEA----VRALG-A-D--TVILRDAPLLADAKALG  240 (350)
T ss_pred             hcCCCCCCEEEEEcCCcHHHHHHHHHHHh--cCCEEEEEeCch-hhHH----HHhcC-C-e--EEEeCCCccHHHHHhhC
Confidence            345678899999998 9999999999994  789999998553 3333    34466 2 2  22211110   10 111


Q ss_pred             CCCcceeehhhhccCChhHHHHHHHHHHhhccCCcEEEEee
Q 042119          200 LGEYDCIFLAALVGMSKEEKLTILGHIRKYMKDGGILLVRS  240 (286)
Q Consensus       200 l~~fD~V~~aalvg~~~~~k~~vl~~l~~~l~pgg~lv~r~  240 (286)
                      -..+|+|+-+.  +    .  ..+....+.|+++|.++.-.
T Consensus       241 ~~~~d~vi~~~--g----~--~~~~~~~~~l~~~G~~v~~g  273 (350)
T cd08274         241 GEPVDVVADVV--G----G--PLFPDLLRLLRPGGRYVTAG  273 (350)
T ss_pred             CCCCcEEEecC--C----H--HHHHHHHHHhccCCEEEEec
Confidence            23699998543  2    1  25778889999999988643

This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcoh

>COG1486 CelF Alpha-galactosidases/6-phospho-beta-glucosidases, family 4 of glycosyl hydrolases [Carbohydrate transport and metabolism]

Probab=94.54  E-value=0.14  Score=50.37  Aligned_cols=79  Identities=20%  Similarity=0.328  Sum_probs=60.0

Q ss_pred             CCEEEEeccCCChhhHHHHHhh----cCCCcEEEEEeCChHHHH----HHHHHHHhcCCCCCCeEEEEccccchhhcCCC
Q 042119          131 PKKVAFVGSGPMPLTSIIMAKH----HLTSTHFDNFDIDEAAND----VARSIVASDAEFEGRMKFLTRDIMEVKEQLGE  202 (286)
Q Consensus       131 ~~~VL~IG~G~lp~tai~lA~~----~~~g~~V~~iDid~~ai~----~Ar~~~~~~g~l~~~i~f~~~D~~~~~~~l~~  202 (286)
                      .-+|.+||+|...++-+.+.--    .+++.++.-+|+|+++.+    .+++++++.|. .  +++....  +....+.+
T Consensus         3 ~~KI~iIGgGSt~tp~~v~g~l~~~e~l~~~el~L~Did~~r~~~i~~~~~~~v~~~g~-~--~kv~~tt--d~~eAl~g   77 (442)
T COG1486           3 KFKIVIIGGGSTYTPKLLLGDLARTEELPVRELALYDIDEERLKIIAILAKKLVEEAGA-P--VKVEATT--DRREALEG   77 (442)
T ss_pred             cceEEEECCCccccHHHHHHHHhcCccCCcceEEEEeCCHHHHHHHHHHHHHHHHhhCC-C--eEEEEec--CHHHHhcC
Confidence            4589999999866555444321    468899999999999999    99999999993 3  6665443  34567788


Q ss_pred             cceeehhhhccC
Q 042119          203 YDCIFLAALVGM  214 (286)
Q Consensus       203 fD~V~~aalvg~  214 (286)
                      .|+|+.+..||.
T Consensus        78 AdfVi~~~rvG~   89 (442)
T COG1486          78 ADFVITQIRVGG   89 (442)
T ss_pred             CCEEEEEEeeCC
Confidence            999998888854

>cd08248 RTN4I1 Human Reticulon 4 Interacting Protein 1

Probab=94.54  E-value=0.16  Score=47.07  Aligned_cols=95  Identities=22%  Similarity=0.263  Sum_probs=60.4

Q ss_pred             CCCEEEEec-cCCChhhHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEccccchhhcCCCcceeeh
Q 042119          130 QPKKVAFVG-SGPMPLTSIIMAKHHLTSTHFDNFDIDEAANDVARSIVASDAEFEGRMKFLTRDIMEVKEQLGEYDCIFL  208 (286)
Q Consensus       130 ~~~~VL~IG-~G~lp~tai~lA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~g~l~~~i~f~~~D~~~~~~~l~~fD~V~~  208 (286)
                      ++.+|+..| +|++|..++.+|++  .|++|+++..+ +.    ++.++..| ...-+.....+..+.......+|+|+.
T Consensus       162 ~g~~vlI~g~~g~ig~~~~~~a~~--~G~~v~~~~~~-~~----~~~~~~~g-~~~~~~~~~~~~~~~l~~~~~vd~vi~  233 (350)
T cd08248         162 AGKRVLILGGSGGVGTFAIQLLKA--WGAHVTTTCST-DA----IPLVKSLG-ADDVIDYNNEDFEEELTERGKFDVILD  233 (350)
T ss_pred             CCCEEEEECCCChHHHHHHHHHHH--CCCeEEEEeCc-ch----HHHHHHhC-CceEEECCChhHHHHHHhcCCCCEEEE
Confidence            489999999 69999999999984  78999888754 33    34445566 321111111111111112346999985


Q ss_pred             hhhccCChhHHHHHHHHHHhhccCCcEEEEee
Q 042119          209 AALVGMSKEEKLTILGHIRKYMKDGGILLVRS  240 (286)
Q Consensus       209 aalvg~~~~~k~~vl~~l~~~l~pgg~lv~r~  240 (286)
                      +.  +    ..  .+....+.++++|+++.-.
T Consensus       234 ~~--g----~~--~~~~~~~~l~~~G~~v~~g  257 (350)
T cd08248         234 TV--G----GD--TEKWALKLLKKGGTYVTLV  257 (350)
T ss_pred             CC--C----hH--HHHHHHHHhccCCEEEEec
Confidence            42  2    11  5677889999999998753

Human Reticulon 4 Interacting Protein 1 is a member of the medium chain dehydrogenase/ reductase (MDR) family. Riticulons are endoplasmic reticulum associated proteins involved in membrane trafficking and neuroendocrine secretion. The MDR/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES.

>PF03446 NAD_binding_2: NAD binding domain of 6-phosphogluconate dehydrogenase; InterPro: IPR006115 6-Phosphogluconate dehydrogenase (1

Probab=94.53  E-value=0.23  Score=41.95  Aligned_cols=90  Identities=18%  Similarity=0.254  Sum_probs=55.1

Q ss_pred             CEEEEeccCCChhhHHHHHhh-cCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEccccchhhcCCCcceeehhh
Q 042119          132 KKVAFVGSGPMPLTSIIMAKH-HLTSTHFDNFDIDEAANDVARSIVASDAEFEGRMKFLTRDIMEVKEQLGEYDCIFLAA  210 (286)
Q Consensus       132 ~~VL~IG~G~lp~tai~lA~~-~~~g~~V~~iDid~~ai~~Ar~~~~~~g~l~~~i~f~~~D~~~~~~~l~~fD~V~~aa  210 (286)
                      ++|.+||.|.+|..   +|++ ...|..|+++|++++..+...+    .|     ++ .+.+..++.   ...|+||.+-
T Consensus         2 ~~Ig~IGlG~mG~~---~a~~L~~~g~~v~~~d~~~~~~~~~~~----~g-----~~-~~~s~~e~~---~~~dvvi~~v   65 (163)
T PF03446_consen    2 MKIGFIGLGNMGSA---MARNLAKAGYEVTVYDRSPEKAEALAE----AG-----AE-VADSPAEAA---EQADVVILCV   65 (163)
T ss_dssp             BEEEEE--SHHHHH---HHHHHHHTTTEEEEEESSHHHHHHHHH----TT-----EE-EESSHHHHH---HHBSEEEE-S
T ss_pred             CEEEEEchHHHHHH---HHHHHHhcCCeEEeeccchhhhhhhHH----hh-----hh-hhhhhhhHh---hcccceEeec
Confidence            48999999987754   3332 2268999999999977655443    23     22 233443433   3469998653


Q ss_pred             hccCChhHHHHHHHH--HHhhccCCcEEEEee
Q 042119          211 LVGMSKEEKLTILGH--IRKYMKDGGILLVRS  240 (286)
Q Consensus       211 lvg~~~~~k~~vl~~--l~~~l~pgg~lv~r~  240 (286)
                      .   +.+.-.+++..  +...+++|.+++--+
T Consensus        66 ~---~~~~v~~v~~~~~i~~~l~~g~iiid~s   94 (163)
T PF03446_consen   66 P---DDDAVEAVLFGENILAGLRPGKIIIDMS   94 (163)
T ss_dssp             S---SHHHHHHHHHCTTHGGGS-TTEEEEE-S
T ss_pred             c---cchhhhhhhhhhHHhhccccceEEEecC
Confidence            2   22444578888  889999998888754

1.1.44 from EC) (6PGD) is an oxidative carboxylase that catalyses the decarboxylating reduction of 6-phosphogluconate into ribulose 5-phosphate in the presence of NADP. This reaction is a component of the hexose mono-phosphate shunt and pentose phosphate pathways (PPP) [, ]. Prokaryotic and eukaryotic 6PGD are proteins of about 470 amino acids whose sequence are highly conserved []. The protein is a homodimer in which the monomers act independently []: each contains a large, mainly alpha-helical domain and a smaller beta-alpha-beta domain, containing a mixed parallel and anti-parallel 6-stranded beta sheet []. NADP is bound in a cleft in the small domain, the substrate binding in an adjacent pocket []. This family represents the NADP binding domain of 6-phosphogluconate dehydrogenase which adopts a Rossman fold. The C-terminal domain is described in IPR006114 from INTERPRO.; GO: 0004616 phosphogluconate dehydrogenase (decarboxylating) activity, 0006098 pentose-phosphate shunt, 0055114 oxidation-reduction process; PDB: 3AX6_D 3PDU_G 3Q3C_A 3OBB_A 4DLL_B 1PGP_A 1PGN_A 2PGD_A 1PGQ_A 1PGO_A ....

>cd08244 MDR_enoyl_red Possible enoyl reductase

Probab=94.52  E-value=0.25  Score=45.09  Aligned_cols=99  Identities=16%  Similarity=0.171  Sum_probs=65.4

Q ss_pred             CCCCCCEEEEec-cCCChhhHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEccccc-hhhcC--CC
Q 042119          127 GVVQPKKVAFVG-SGPMPLTSIIMAKHHLTSTHFDNFDIDEAANDVARSIVASDAEFEGRMKFLTRDIME-VKEQL--GE  202 (286)
Q Consensus       127 ~~~~~~~VL~IG-~G~lp~tai~lA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~g~l~~~i~f~~~D~~~-~~~~l--~~  202 (286)
                      ...++.+|+..| +|++|..++.+|++  .|.+|++++.+++..+.+++    .| ...-+.....+..+ +....  .+
T Consensus       139 ~~~~~~~vlI~g~~~~~g~~~~~la~~--~g~~v~~~~~~~~~~~~~~~----~g-~~~~~~~~~~~~~~~~~~~~~~~~  211 (324)
T cd08244         139 TLTPGDVVLVTAAAGGLGSLLVQLAKA--AGATVVGAAGGPAKTALVRA----LG-ADVAVDYTRPDWPDQVREALGGGG  211 (324)
T ss_pred             CCCCCCEEEEEcCCchHHHHHHHHHHH--CCCEEEEEeCCHHHHHHHHH----cC-CCEEEecCCccHHHHHHHHcCCCC
Confidence            457789999999 68999999999994  78999999999988766643    56 22111111112111 11111  35


Q ss_pred             cceeehhhhccCChhHHHHHHHHHHhhccCCcEEEEee
Q 042119          203 YDCIFLAALVGMSKEEKLTILGHIRKYMKDGGILLVRS  240 (286)
Q Consensus       203 fD~V~~aalvg~~~~~k~~vl~~l~~~l~pgg~lv~r~  240 (286)
                      +|+|+-+.  |    .+  ......+.++++|.++.-.
T Consensus       212 ~d~vl~~~--g----~~--~~~~~~~~l~~~g~~v~~g  241 (324)
T cd08244         212 VTVVLDGV--G----GA--IGRAALALLAPGGRFLTYG  241 (324)
T ss_pred             ceEEEECC--C----hH--hHHHHHHHhccCcEEEEEe
Confidence            99998542  2    22  3477888999999988754

Member identified as possible enoyl reductase of the MDR family. 2-enoyl thioester reductase (ETR) catalyzes the NADPH-dependent dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the alcohol dehydrogenases in this family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydr

>COG1748 LYS9 Saccharopine dehydrogenase and related proteins [Amino acid transport and metabolism]

Probab=94.51  E-value=0.17  Score=49.18  Aligned_cols=71  Identities=17%  Similarity=0.204  Sum_probs=54.3

Q ss_pred             CEEEEeccCCChhhHHHH-HhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEccccchhh---cCCCcceee
Q 042119          132 KKVAFVGSGPMPLTSIIM-AKHHLTSTHFDNFDIDEAANDVARSIVASDAEFEGRMKFLTRDIMEVKE---QLGEYDCIF  207 (286)
Q Consensus       132 ~~VL~IG~G~lp~tai~l-A~~~~~g~~V~~iDid~~ai~~Ar~~~~~~g~l~~~i~f~~~D~~~~~~---~l~~fD~V~  207 (286)
                      ++||.||||..|.+.... |+  -...+|+..|.+++..+.+...   -+   .+++++.-|+.+...   -+.++|+|+
T Consensus         2 ~~ilviGaG~Vg~~va~~la~--~~d~~V~iAdRs~~~~~~i~~~---~~---~~v~~~~vD~~d~~al~~li~~~d~VI   73 (389)
T COG1748           2 MKILVIGAGGVGSVVAHKLAQ--NGDGEVTIADRSKEKCARIAEL---IG---GKVEALQVDAADVDALVALIKDFDLVI   73 (389)
T ss_pred             CcEEEECCchhHHHHHHHHHh--CCCceEEEEeCCHHHHHHHHhh---cc---ccceeEEecccChHHHHHHHhcCCEEE
Confidence            689999999998887776 54  2338999999999888777665   22   378899999887533   346889998


Q ss_pred             hhh
Q 042119          208 LAA  210 (286)
Q Consensus       208 ~aa  210 (286)
                      .++
T Consensus        74 n~~   76 (389)
T COG1748          74 NAA   76 (389)
T ss_pred             EeC
Confidence            664

>PRK12490 6-phosphogluconate dehydrogenase-like protein; Reviewed

Probab=94.50  E-value=0.23  Score=46.20  Aligned_cols=91  Identities=16%  Similarity=0.250  Sum_probs=57.1

Q ss_pred             EEEEeccCCChhhHH-HHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEccccchhhcCCCcceeehhhh
Q 042119          133 KVAFVGSGPMPLTSI-IMAKHHLTSTHFDNFDIDEAANDVARSIVASDAEFEGRMKFLTRDIMEVKEQLGEYDCIFLAAL  211 (286)
Q Consensus       133 ~VL~IG~G~lp~tai-~lA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~g~l~~~i~f~~~D~~~~~~~l~~fD~V~~aal  211 (286)
                      +|.+||+|.+|..-. .+++   .|.+|+++|.+++..+..+    ..|.     + .+.+..++....+..|+|+++.-
T Consensus         2 ~Ig~IGlG~mG~~mA~~L~~---~g~~v~v~dr~~~~~~~~~----~~g~-----~-~~~s~~~~~~~~~~advVi~~vp   68 (299)
T PRK12490          2 KLGLIGLGKMGGNMAERLRE---DGHEVVGYDVNQEAVDVAG----KLGI-----T-ARHSLEELVSKLEAPRTIWVMVP   68 (299)
T ss_pred             EEEEEcccHHHHHHHHHHHh---CCCEEEEEECCHHHHHHHH----HCCC-----e-ecCCHHHHHHhCCCCCEEEEEec
Confidence            799999998876432 2333   6789999999998766543    3451     1 12343333332223688886532


Q ss_pred             ccCChhHHHHHHHHHHhhccCCcEEEEe
Q 042119          212 VGMSKEEKLTILGHIRKYMKDGGILLVR  239 (286)
Q Consensus       212 vg~~~~~k~~vl~~l~~~l~pgg~lv~r  239 (286)
                         +.+.-..+++.+...+++|.+++--
T Consensus        69 ---~~~~~~~v~~~i~~~l~~g~ivid~   93 (299)
T PRK12490         69 ---AGEVTESVIKDLYPLLSPGDIVVDG   93 (299)
T ss_pred             ---CchHHHHHHHHHhccCCCCCEEEEC
Confidence               1124456778888888888877664

>PRK05786 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional

Probab=94.49  E-value=0.55  Score=40.98  Aligned_cols=105  Identities=17%  Similarity=0.216  Sum_probs=62.7

Q ss_pred             CCCEEEEeccCCChhhHHHHHhh-cCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEccccchhh----------
Q 042119          130 QPKKVAFVGSGPMPLTSIIMAKH-HLTSTHFDNFDIDEAANDVARSIVASDAEFEGRMKFLTRDIMEVKE----------  198 (286)
Q Consensus       130 ~~~~VL~IG~G~lp~tai~lA~~-~~~g~~V~~iDid~~ai~~Ar~~~~~~g~l~~~i~f~~~D~~~~~~----------  198 (286)
                      ++++|+..|++ .++.. .+++. ...|.+|++++.+++..+...+.....    .++.++.+|+.+...          
T Consensus         4 ~~~~vlItGa~-g~iG~-~~a~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~----~~~~~~~~Dl~~~~~~~~~~~~~~~   77 (238)
T PRK05786          4 KGKKVAIIGVS-EGLGY-AVAYFALKEGAQVCINSRNENKLKRMKKTLSKY----GNIHYVVGDVSSTESARNVIEKAAK   77 (238)
T ss_pred             CCcEEEEECCC-chHHH-HHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhc----CCeEEEECCCCCHHHHHHHHHHHHH
Confidence            46799999985 33332 23332 237999999999988766554433332    258889999875221          


Q ss_pred             cCCCcceeehhhhccC--ChhH--------------HHHHHHHHHhhccCCcEEEEee
Q 042119          199 QLGEYDCIFLAALVGM--SKEE--------------KLTILGHIRKYMKDGGILLVRS  240 (286)
Q Consensus       199 ~l~~fD~V~~aalvg~--~~~~--------------k~~vl~~l~~~l~pgg~lv~r~  240 (286)
                      ..+..|.++..+....  ...+              ...+++.+.+.|+++|.+++-+
T Consensus        78 ~~~~id~ii~~ag~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~iv~~s  135 (238)
T PRK05786         78 VLNAIDGLVVTVGGYVEDTVEEFSGLEEMLTNHIKIPLYAVNASLRFLKEGSSIVLVS  135 (238)
T ss_pred             HhCCCCEEEEcCCCcCCCchHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCEEEEEe
Confidence            1234687775543210  1111              1234666777778888777765

>PRK12491 pyrroline-5-carboxylate reductase; Reviewed

Probab=94.48  E-value=0.26  Score=45.43  Aligned_cols=91  Identities=19%  Similarity=0.289  Sum_probs=55.0

Q ss_pred             CEEEEeccCCChhhHHH-HHhh-cCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEccccchhhcCCCcceeehh
Q 042119          132 KKVAFVGSGPMPLTSII-MAKH-HLTSTHFDNFDIDEAANDVARSIVASDAEFEGRMKFLTRDIMEVKEQLGEYDCIFLA  209 (286)
Q Consensus       132 ~~VL~IG~G~lp~tai~-lA~~-~~~g~~V~~iDid~~ai~~Ar~~~~~~g~l~~~i~f~~~D~~~~~~~l~~fD~V~~a  209 (286)
                      .+|.|||||.+|.+-.. |.+. +....+|+++|++++..+.+.+   ..|     ++. +.|..+.   ....|+||++
T Consensus         3 ~~IgfIG~G~MG~aia~~L~~~g~~~~~~I~v~~r~~~~~~~l~~---~~g-----~~~-~~~~~e~---~~~aDiIiLa   70 (272)
T PRK12491          3 KQIGFIGCGNMGIAMIGGMINKNIVSPDQIICSDLNVSNLKNASD---KYG-----ITI-TTNNNEV---ANSADILILS   70 (272)
T ss_pred             CeEEEECccHHHHHHHHHHHHCCCCCCceEEEECCCHHHHHHHHH---hcC-----cEE-eCCcHHH---HhhCCEEEEE
Confidence            48999999988765332 1121 1134579999999877554333   345     222 2343332   2467999987


Q ss_pred             hhccCChhHHHHHHHHHHhhccCCcEEEEe
Q 042119          210 ALVGMSKEEKLTILGHIRKYMKDGGILLVR  239 (286)
Q Consensus       210 alvg~~~~~k~~vl~~l~~~l~pgg~lv~r  239 (286)
                      .-    +..-..+++.+...++++. +++.
T Consensus        71 vk----P~~~~~vl~~l~~~~~~~~-lvIS   95 (272)
T PRK12491         71 IK----PDLYSSVINQIKDQIKNDV-IVVT   95 (272)
T ss_pred             eC----hHHHHHHHHHHHHhhcCCc-EEEE
Confidence            43    2556678888888777664 4444

>TIGR01318 gltD_gamma_fam glutamate synthase small subunit family protein, proteobacterial

Probab=94.46  E-value=0.072  Score=52.76  Aligned_cols=36  Identities=25%  Similarity=0.363  Sum_probs=30.7

Q ss_pred             CCCCEEEEeccCCChhhHHHHHhhcCCCcEEEEEeCCh
Q 042119          129 VQPKKVAFVGSGPMPLTSIIMAKHHLTSTHFDNFDIDE  166 (286)
Q Consensus       129 ~~~~~VL~IG~G~lp~tai~lA~~~~~g~~V~~iDid~  166 (286)
                      ..+++|+.||+||.|+++...+++  .|.+|+.+|..+
T Consensus       139 ~~~~~V~IIG~GpaGl~aA~~l~~--~G~~V~i~e~~~  174 (467)
T TIGR01318       139 PTGKRVAVIGAGPAGLACADILAR--AGVQVVVFDRHP  174 (467)
T ss_pred             CCCCeEEEECCCHHHHHHHHHHHH--cCCeEEEEecCC
Confidence            356899999999999999887773  789999999765

This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit and homologs. TIGR01317 describes the small subunit (or equivalent region from longer forms) in eukaryotes, Gram-positive bacteria, and some other lineages, both NADH and NADPH-dependent. TIGR01316 describes a protein of similar length, from Archaea and a number of bacterial lineages, that forms glutamate synthase homotetramers without a large subunit. This model describes both glutatate synthase small subunit and closely related paralogs of unknown function from a number of gamma and alpha subdivision Proteobacteria, including E. coli.

>PRK14618 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional

Probab=94.44  E-value=0.15  Score=47.94  Aligned_cols=94  Identities=14%  Similarity=0.068  Sum_probs=54.7

Q ss_pred             CCCEEEEeccCCChhhHHH-HHhhcCCCcEEEEEeCChHHHHHHHHHHHhc----CC-CCCCeEEEEccccchhhcCCCc
Q 042119          130 QPKKVAFVGSGPMPLTSII-MAKHHLTSTHFDNFDIDEAANDVARSIVASD----AE-FEGRMKFLTRDIMEVKEQLGEY  203 (286)
Q Consensus       130 ~~~~VL~IG~G~lp~tai~-lA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~----g~-l~~~i~f~~~D~~~~~~~l~~f  203 (286)
                      ..++|.+||+|.+|..-.. |++   .|.+|+.+|.+++..+..++.-...    |. +..++. .+.|.   .......
T Consensus         3 ~~m~I~iIG~G~mG~~ia~~L~~---~G~~V~~~~r~~~~~~~i~~~~~~~~~~~g~~~~~~~~-~~~~~---~e~~~~a   75 (328)
T PRK14618          3 HGMRVAVLGAGAWGTALAVLAAS---KGVPVRLWARRPEFAAALAAERENREYLPGVALPAELY-PTADP---EEALAGA   75 (328)
T ss_pred             CCCeEEEECcCHHHHHHHHHHHH---CCCeEEEEeCCHHHHHHHHHhCcccccCCCCcCCCCeE-EeCCH---HHHHcCC
Confidence            3568999999998865433 333   6789999999988766555431100    10 001121 12232   2223578


Q ss_pred             ceeehhhhccCChhHHHHHHHHHHhhccCCcEEEE
Q 042119          204 DCIFLAALVGMSKEEKLTILGHIRKYMKDGGILLV  238 (286)
Q Consensus       204 D~V~~aalvg~~~~~k~~vl~~l~~~l~pgg~lv~  238 (286)
                      |+|+++.-      ..  .++.+.+.++|+..++.
T Consensus        76 D~Vi~~v~------~~--~~~~v~~~l~~~~~vi~  102 (328)
T PRK14618         76 DFAVVAVP------SK--ALRETLAGLPRALGYVS  102 (328)
T ss_pred             CEEEEECc------hH--HHHHHHHhcCcCCEEEE
Confidence            99987632      11  24666677888765553

>cd08261 Zn_ADH7 Alcohol dehydrogenases of the MDR family

Probab=94.44  E-value=0.21  Score=46.26  Aligned_cols=100  Identities=22%  Similarity=0.294  Sum_probs=67.1

Q ss_pred             CCCCCCEEEEeccCCChhhHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEccccc-hhh--cCCCc
Q 042119          127 GVVQPKKVAFVGSGPMPLTSIIMAKHHLTSTHFDNFDIDEAANDVARSIVASDAEFEGRMKFLTRDIME-VKE--QLGEY  203 (286)
Q Consensus       127 ~~~~~~~VL~IG~G~lp~tai~lA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~g~l~~~i~f~~~D~~~-~~~--~l~~f  203 (286)
                      ...++.+||..|+|.+|..++.+|++  .|.+|+++..+++..+..++    .| ...-+.....+..+ +..  ....+
T Consensus       156 ~l~~g~~vLI~g~g~vG~~a~~lA~~--~g~~v~~~~~s~~~~~~~~~----~g-~~~v~~~~~~~~~~~l~~~~~~~~v  228 (337)
T cd08261         156 GVTAGDTVLVVGAGPIGLGVIQVAKA--RGARVIVVDIDDERLEFARE----LG-ADDTINVGDEDVAARLRELTDGEGA  228 (337)
T ss_pred             CCCCCCEEEEECCCHHHHHHHHHHHH--cCCeEEEECCCHHHHHHHHH----hC-CCEEecCcccCHHHHHHHHhCCCCC
Confidence            45778899999999889999999994  78999999999888777654    34 21222222222111 111  11358


Q ss_pred             ceeehhhhccCChhHHHHHHHHHHhhccCCcEEEEee
Q 042119          204 DCIFLAALVGMSKEEKLTILGHIRKYMKDGGILLVRS  240 (286)
Q Consensus       204 D~V~~aalvg~~~~~k~~vl~~l~~~l~pgg~lv~r~  240 (286)
                      |+++.+..      . ...+..+.+.|+++|.++.-.
T Consensus       229 d~vld~~g------~-~~~~~~~~~~l~~~G~~i~~g  258 (337)
T cd08261         229 DVVIDATG------N-PASMEEAVELVAHGGRVVLVG  258 (337)
T ss_pred             CEEEECCC------C-HHHHHHHHHHHhcCCEEEEEc
Confidence            99986532      1 135678889999999988643

This group contains members identified as related to zinc-dependent alcohol dehydrogenase and other members of the MDR family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group includes various activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase,

>cd01338 MDH_choloroplast_like Chloroplast-like malate dehydrogenases

Probab=94.43  E-value=0.17  Score=47.86  Aligned_cols=107  Identities=15%  Similarity=0.184  Sum_probs=64.3

Q ss_pred             CCCEEEEecc-CCChhhHHHHHhhcCCCc-----EEEEEeCChH---HHHHHHHHHHhcCCCCCCeEEEEccccchhhcC
Q 042119          130 QPKKVAFVGS-GPMPLTSIIMAKHHLTST-----HFDNFDIDEA---ANDVARSIVASDAEFEGRMKFLTRDIMEVKEQL  200 (286)
Q Consensus       130 ~~~~VL~IG~-G~lp~tai~lA~~~~~g~-----~V~~iDid~~---ai~~Ar~~~~~~g~l~~~i~f~~~D~~~~~~~l  200 (286)
                      +|.+|..||+ |..|.+..+.......-.     +++-+|+.+.   +...|..+......+..++++..+|    ..++
T Consensus         1 ~p~KV~IiGa~G~VG~~~a~~l~~~~~~~~~~~~el~L~Di~~~~~~a~g~a~Dl~~~~~~~~~~~~i~~~~----~~~~   76 (322)
T cd01338           1 KPVRVAVTGAAGQIGYSLLFRIASGEMFGPDQPVILQLLELPQALKALEGVAMELEDCAFPLLAEIVITDDP----NVAF   76 (322)
T ss_pred             CCeEEEEECCCcHHHHHHHHHHHhccccCCCCceEEEEEecCCcccccceeehhhhhccccccCceEEecCc----HHHh
Confidence            4789999999 998888665433111122     7999999543   5666777666542122345554333    3456


Q ss_pred             CCcceeehhhhc----cCChhH----HHHHHHHHHhhc---c-CCcEEEEee
Q 042119          201 GEYDCIFLAALV----GMSKEE----KLTILGHIRKYM---K-DGGILLVRS  240 (286)
Q Consensus       201 ~~fD~V~~aalv----g~~~~~----k~~vl~~l~~~l---~-pgg~lv~r~  240 (286)
                      .+.|+|++.+-+    |++..+    ..++++.+.+.+   . |.|++++-+
T Consensus        77 ~daDivvitaG~~~k~g~tR~dll~~N~~i~~~i~~~i~~~~~~~~iiivvs  128 (322)
T cd01338          77 KDADWALLVGAKPRGPGMERADLLKANGKIFTAQGKALNDVASRDVKVLVVG  128 (322)
T ss_pred             CCCCEEEEeCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHhhCCCCeEEEEec
Confidence            789999987755    443322    233444444433   4 588887765

MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are bacterial MDHs, and plant MDHs localized to the choloroplasts. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.

>cd05286 QOR2 Quinone oxidoreductase (QOR)

Probab=94.42  E-value=0.23  Score=44.46  Aligned_cols=97  Identities=19%  Similarity=0.171  Sum_probs=64.6

Q ss_pred             CCCCCCEEEEec-cCCChhhHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEc--cccc-hhh--cC
Q 042119          127 GVVQPKKVAFVG-SGPMPLTSIIMAKHHLTSTHFDNFDIDEAANDVARSIVASDAEFEGRMKFLTR--DIME-VKE--QL  200 (286)
Q Consensus       127 ~~~~~~~VL~IG-~G~lp~tai~lA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~g~l~~~i~f~~~--D~~~-~~~--~l  200 (286)
                      ...++.+|+..| +|++|..++.+|+.  .|++|++++.+++..+.+++    .| . +.+ +...  +..+ +..  .-
T Consensus       133 ~~~~g~~vlI~g~~g~~g~~~~~~a~~--~g~~v~~~~~~~~~~~~~~~----~g-~-~~~-~~~~~~~~~~~~~~~~~~  203 (320)
T cd05286         133 PVKPGDTVLVHAAAGGVGLLLTQWAKA--LGATVIGTVSSEEKAELARA----AG-A-DHV-INYRDEDFVERVREITGG  203 (320)
T ss_pred             CCCCCCEEEEEcCCchHHHHHHHHHHH--cCCEEEEEcCCHHHHHHHHH----CC-C-CEE-EeCCchhHHHHHHHHcCC
Confidence            456789999999 68999999999984  78999999999988766643    56 2 211 1111  1111 111  11


Q ss_pred             CCcceeehhhhccCChhHHHHHHHHHHhhccCCcEEEEee
Q 042119          201 GEYDCIFLAALVGMSKEEKLTILGHIRKYMKDGGILLVRS  240 (286)
Q Consensus       201 ~~fD~V~~aalvg~~~~~k~~vl~~l~~~l~pgg~lv~r~  240 (286)
                      ..+|+|+-+.  +    .  ..+....+.|+++|.++.-.
T Consensus       204 ~~~d~vl~~~--~----~--~~~~~~~~~l~~~g~~v~~g  235 (320)
T cd05286         204 RGVDVVYDGV--G----K--DTFEGSLDSLRPRGTLVSFG  235 (320)
T ss_pred             CCeeEEEECC--C----c--HhHHHHHHhhccCcEEEEEe
Confidence            3599988542  2    1  25567788899999988653

Quinone oxidoreductase (QOR) and 2-haloacrylate reductase. QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR actin the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. 2-haloacrylate reductase, a member of this subgroup, catalyzes the NADPH-dependent reduction of a carbon-carbon double bond in organohalogen compounds. Although similar to QOR, Burkholderia 2-haloacrylate reductase does not act on the quinones 1,4-benzoquinone

>cd05197 GH4_glycoside_hydrolases Glycoside Hydrases Family 4

Probab=94.38  E-value=0.18  Score=49.56  Aligned_cols=77  Identities=25%  Similarity=0.390  Sum_probs=55.5

Q ss_pred             CEEEEeccCCChhhHHHHHhh-----cCCCcEEEEEeCChHHHHH----HHHHHHhcCCCCCCeEEEEccccchhhcCCC
Q 042119          132 KKVAFVGSGPMPLTSIIMAKH-----HLTSTHFDNFDIDEAANDV----ARSIVASDAEFEGRMKFLTRDIMEVKEQLGE  202 (286)
Q Consensus       132 ~~VL~IG~G~lp~tai~lA~~-----~~~g~~V~~iDid~~ai~~----Ar~~~~~~g~l~~~i~f~~~D~~~~~~~l~~  202 (286)
                      .||.+||+|.. +|...+..-     .+++.+|+-+|+|+++++.    |++++++.|   ..+++...  ++....+.+
T Consensus         1 ~KI~iIGgGS~-~tp~li~~l~~~~~~l~~~ei~L~Did~~Rl~~v~~l~~~~~~~~g---~~~~v~~t--tD~~~Al~g   74 (425)
T cd05197           1 VKIAIIGGGSS-FTPELVSGLLKTPEELPISEVTLYDIDEERLDIILTIAKRYVEEVG---ADIKFEKT--MDLEDAIID   74 (425)
T ss_pred             CEEEEECCchH-hHHHHHHHHHcChhhCCCCEEEEEcCCHHHHHHHHHHHHHHHHhhC---CCeEEEEe--CCHHHHhCC
Confidence            37999999975 775544321     2678999999999998886    677777777   24555432  334566778


Q ss_pred             cceeehhhhccC
Q 042119          203 YDCIFLAALVGM  214 (286)
Q Consensus       203 fD~V~~aalvg~  214 (286)
                      .|+|+...-+|.
T Consensus        75 ADfVi~~irvGg   86 (425)
T cd05197          75 ADFVINQFRVGG   86 (425)
T ss_pred             CCEEEEeeecCC
Confidence            999998877754

Glycoside hydrolases cleave glycosidic bonds to release smaller sugars from oligo- or polysaccharides. Some bacteria simultaneously translocate and phosphorylate disaccharides via the phosphoenolpyruvate-dependent phosphotransferase system (PEP-PTS). After translocation, these phospho-disaccharides may be hydrolyzed by GH4 glycoside hydrolases. Other organisms (such as archaea and Thermotoga maritima) lack the PEP-PTS system, but have several enzymes normally associated with the PEP-PTS operon. GH4 family members include 6-phospho-beta-glucosidases, 6-phospho-alpha-glucosidases, alpha-glucosidases/alpha-glucuronidases (only from Thermotoga), and alpha-galactosidases. They require two cofactors, NAD+ and a divalent metal (Mn2+, Ni2+, Mg2+), for activity. Some also require reducing conditions. GH4 glycoside hydrolases are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families in

>cd00650 LDH_MDH_like NAD-dependent, lactate dehydrogenase-like, 2-hydroxycarboxylate dehydrogenase family

Probab=94.38  E-value=0.21  Score=45.52  Aligned_cols=104  Identities=21%  Similarity=0.211  Sum_probs=61.4

Q ss_pred             EEEecc-CCChhhHHHHHhhcC--CCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEccccchhhcCCCcceeehhh
Q 042119          134 VAFVGS-GPMPLTSIIMAKHHL--TSTHFDNFDIDEAANDVARSIVASDAEFEGRMKFLTRDIMEVKEQLGEYDCIFLAA  210 (286)
Q Consensus       134 VL~IG~-G~lp~tai~lA~~~~--~g~~V~~iDid~~ai~~Ar~~~~~~g~l~~~i~f~~~D~~~~~~~l~~fD~V~~aa  210 (286)
                      |..||+ |.+|.+.........  ...+++-+|++++.++....-+++.-......++...+  +...++.+.|+|++.+
T Consensus         1 I~IIGagG~vG~~ia~~l~~~~~~~~~el~L~D~~~~~l~~~~~dl~~~~~~~~~~~i~~~~--d~~~~~~~aDiVv~t~   78 (263)
T cd00650           1 IAVIGAGGNVGPALAFGLADGSVLLAIELVLYDIDEEKLKGVAMDLQDAVEPLADIKVSITD--DPYEAFKDADVVIITA   78 (263)
T ss_pred             CEEECCCChHHHHHHHHHHhCCCCcceEEEEEeCCcccchHHHHHHHHhhhhccCcEEEECC--chHHHhCCCCEEEECC
Confidence            468999 877765554332112  23799999999977776666555432111123443222  1234456899999865


Q ss_pred             hc----cC--------ChhHHHHHHHHHHhhccCCcEEEEee
Q 042119          211 LV----GM--------SKEEKLTILGHIRKYMKDGGILLVRS  240 (286)
Q Consensus       211 lv----g~--------~~~~k~~vl~~l~~~l~pgg~lv~r~  240 (286)
                      -+    |+        +.+-+.++.+.+.+.- |+|.+++-+
T Consensus        79 ~~~~~~g~~r~~~~~~n~~i~~~i~~~i~~~~-p~a~~i~~t  119 (263)
T cd00650          79 GVGRKPGMGRLDLLKRNVPIVKEIGDNIEKYS-PDAWIIVVS  119 (263)
T ss_pred             CCCCCcCCCHHHHHHHHHHHHHHHHHHHHHHC-CCeEEEEec
Confidence            33    11        2234667777777664 888877754

Members of this family include ubiquitous enzymes like L-lactate dehydrogenases (LDH), L-2-hydroxyisocaproate dehydrogenases, and some malate dehydrogenases (MDH). LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH/MDH-like proteins are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains

>cd08260 Zn_ADH6 Alcohol dehydrogenases of the MDR family

Probab=94.34  E-value=0.16  Score=47.19  Aligned_cols=100  Identities=18%  Similarity=0.178  Sum_probs=66.9

Q ss_pred             CCCCCCEEEEeccCCChhhHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEE-ccccchhhcC--CCc
Q 042119          127 GVVQPKKVAFVGSGPMPLTSIIMAKHHLTSTHFDNFDIDEAANDVARSIVASDAEFEGRMKFLT-RDIMEVKEQL--GEY  203 (286)
Q Consensus       127 ~~~~~~~VL~IG~G~lp~tai~lA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~g~l~~~i~f~~-~D~~~~~~~l--~~f  203 (286)
                      ...++++|+..|+|++|..++.+|++  .|.+|++++.+++..+.+++    .| ...-+.... .|..+....+  +.+
T Consensus       162 ~~~~~~~vlV~g~g~vg~~~~~~a~~--~G~~vi~~~~~~~~~~~~~~----~g-~~~~i~~~~~~~~~~~~~~~~~~~~  234 (345)
T cd08260         162 RVKPGEWVAVHGCGGVGLSAVMIASA--LGARVIAVDIDDDKLELARE----LG-AVATVNASEVEDVAAAVRDLTGGGA  234 (345)
T ss_pred             CCCCCCEEEEECCCHHHHHHHHHHHH--cCCeEEEEeCCHHHHHHHHH----hC-CCEEEccccchhHHHHHHHHhCCCC
Confidence            45678999999999999999999994  68999999999988776643    56 321122221 1211111111  269


Q ss_pred             ceeehhhhccCChhHHHHHHHHHHhhccCCcEEEEee
Q 042119          204 DCIFLAALVGMSKEEKLTILGHIRKYMKDGGILLVRS  240 (286)
Q Consensus       204 D~V~~aalvg~~~~~k~~vl~~l~~~l~pgg~lv~r~  240 (286)
                      |+|+-.  ++   .  ...+....+.|+++|.++.-.
T Consensus       235 d~vi~~--~g---~--~~~~~~~~~~l~~~g~~i~~g  264 (345)
T cd08260         235 HVSVDA--LG---I--PETCRNSVASLRKRGRHVQVG  264 (345)
T ss_pred             CEEEEc--CC---C--HHHHHHHHHHhhcCCEEEEeC
Confidence            998843  32   1  235667888999999988754

NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. This group has the characteristic catalytic and structural zinc sites of the zinc-dependent alcohol dehydrogenases. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (ty

>KOG4589 consensus Cell division protein FtsJ [Cell cycle control, cell division, chromosome partitioning]

Probab=94.33  E-value=0.48  Score=41.88  Aligned_cols=138  Identities=14%  Similarity=0.196  Sum_probs=77.9

Q ss_pred             CCCCEEEEeccCCChhhHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEc-cccchh------hcC-
Q 042119          129 VQPKKVAFVGSGPMPLTSIIMAKHHLTSTHFDNFDIDEAANDVARSIVASDAEFEGRMKFLTR-DIMEVK------EQL-  200 (286)
Q Consensus       129 ~~~~~VL~IG~G~lp~tai~lA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~g~l~~~i~f~~~-D~~~~~------~~l-  200 (286)
                      .++.+|||+|+.|+..|-....+ ..|.+-|.|||+=+-           .+.  ..++++++ |+.+-.      ..+ 
T Consensus        68 ~p~~~VlD~G~APGsWsQVavqr-~~p~g~v~gVDllh~-----------~p~--~Ga~~i~~~dvtdp~~~~ki~e~lp  133 (232)
T KOG4589|consen   68 RPEDTVLDCGAAPGSWSQVAVQR-VNPNGMVLGVDLLHI-----------EPP--EGATIIQGNDVTDPETYRKIFEALP  133 (232)
T ss_pred             CCCCEEEEccCCCChHHHHHHHh-hCCCceEEEEeeeec-----------cCC--CCcccccccccCCHHHHHHHHHhCC
Confidence            78999999999998776555444 458899999998421           221  23455555 544311      111 


Q ss_pred             -CCcceeehhhh---ccCChhHHHH-------HHHHHHhhccCCcEEEEeecCcceeeecccCCcccc-cCcEEEEEecC
Q 042119          201 -GEYDCIFLAAL---VGMSKEEKLT-------ILGHIRKYMKDGGILLVRSAKGARAFLYPVVVEHDL-LDFEVLSAVHP  268 (286)
Q Consensus       201 -~~fD~V~~aal---vg~~~~~k~~-------vl~~l~~~l~pgg~lv~r~~~g~r~~lyp~v~~~~l-~gf~~~~~~~P  268 (286)
                       ...|+|+-+-.   -|...-+-..       ++.--...++|+|.+++....|--.-.   ++. ++ .-|+.+.++.|
T Consensus       134 ~r~VdvVlSDMapnaTGvr~~Dh~~~i~LC~s~l~~al~~~~p~g~fvcK~w~g~e~~~---l~r-~l~~~f~~Vk~vKP  209 (232)
T KOG4589|consen  134 NRPVDVVLSDMAPNATGVRIRDHYRSIELCDSALLFALTLLIPNGSFVCKLWDGSEEAL---LQR-RLQAVFTNVKKVKP  209 (232)
T ss_pred             CCcccEEEeccCCCCcCcchhhHHHHHHHHHHHHHHhhhhcCCCcEEEEEEecCCchHH---HHH-HHHHHhhhcEeeCC
Confidence             23566653321   1222222222       333334567899999998755521100   011 22 35888888888


Q ss_pred             cccceee---eEEEeecCC
Q 042119          269 NDDVINS---VVLVRNSQG  284 (286)
Q Consensus       269 ~~~vins---vi~~r~~~~  284 (286)
                      ...--+|   +.++|+.+|
T Consensus       210 ~Asr~eS~E~y~v~~~~k~  228 (232)
T KOG4589|consen  210 DASRDESAETYLVCLNFKG  228 (232)
T ss_pred             ccccccccceeeeeeeccC
Confidence            7654443   677776544

>COG1867 TRM1 N2,N2-dimethylguanosine tRNA methyltransferase [Translation, ribosomal structure and biogenesis]

Probab=94.31  E-value=0.23  Score=47.83  Aligned_cols=101  Identities=21%  Similarity=0.259  Sum_probs=78.4

Q ss_pred             CCEEEEeccCCChhhHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEccccchhhcC-CCcceeehh
Q 042119          131 PKKVAFVGSGPMPLTSIIMAKHHLTSTHFDNFDIDEAANDVARSIVASDAEFEGRMKFLTRDIMEVKEQL-GEYDCIFLA  209 (286)
Q Consensus       131 ~~~VL~IG~G~lp~tai~lA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~g~l~~~i~f~~~D~~~~~~~l-~~fD~V~~a  209 (286)
                      +.+|+|-=||+ |.=+|..|.. .+..+|+.=|++|+|+++.+++++... .++ ...+..|+..+.... ..||+|=++
T Consensus        53 ~~~v~Dalsat-GiRgIRya~E-~~~~~v~lNDisp~Avelik~Nv~~N~-~~~-~~v~n~DAN~lm~~~~~~fd~IDiD  128 (380)
T COG1867          53 PKRVLDALSAT-GIRGIRYAVE-TGVVKVVLNDISPKAVELIKENVRLNS-GED-AEVINKDANALLHELHRAFDVIDID  128 (380)
T ss_pred             CeEEeeccccc-chhHhhhhhh-cCccEEEEccCCHHHHHHHHHHHHhcC-ccc-ceeecchHHHHHHhcCCCccEEecC
Confidence            88999999984 8889999984 333389999999999999999999873 234 444448887776653 469998766


Q ss_pred             hhccCChhHHHHHHHHHHhhccCCcEEEEee
Q 042119          210 ALVGMSKEEKLTILGHIRKYMKDGGILLVRS  240 (286)
Q Consensus       210 alvg~~~~~k~~vl~~l~~~l~pgg~lv~r~  240 (286)
                      -+ |    ....+++...+.++.||+|.+.-
T Consensus       129 PF-G----SPaPFlDaA~~s~~~~G~l~vTA  154 (380)
T COG1867         129 PF-G----SPAPFLDAALRSVRRGGLLCVTA  154 (380)
T ss_pred             CC-C----CCchHHHHHHHHhhcCCEEEEEe
Confidence            54 3    34468888999999999998863

>COG0569 TrkA K+ transport systems, NAD-binding component [Inorganic ion transport and metabolism]

Probab=94.31  E-value=0.4  Score=43.00  Aligned_cols=85  Identities=14%  Similarity=0.095  Sum_probs=55.2

Q ss_pred             CEEEEeccCCChhhHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEccccchh--h--cCCCcceee
Q 042119          132 KKVAFVGSGPMPLTSIIMAKHHLTSTHFDNFDIDEAANDVARSIVASDAEFEGRMKFLTRDIMEVK--E--QLGEYDCIF  207 (286)
Q Consensus       132 ~~VL~IG~G~lp~tai~lA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~g~l~~~i~f~~~D~~~~~--~--~l~~fD~V~  207 (286)
                      ++++.||+|.+|.+......  ..|..|+.||.|++.++....-  ..     ....+++|+.+..  .  ....+|+++
T Consensus         1 m~iiIiG~G~vG~~va~~L~--~~g~~Vv~Id~d~~~~~~~~~~--~~-----~~~~v~gd~t~~~~L~~agi~~aD~vv   71 (225)
T COG0569           1 MKIIIIGAGRVGRSVARELS--EEGHNVVLIDRDEERVEEFLAD--EL-----DTHVVIGDATDEDVLEEAGIDDADAVV   71 (225)
T ss_pred             CEEEEECCcHHHHHHHHHHH--hCCCceEEEEcCHHHHHHHhhh--hc-----ceEEEEecCCCHHHHHhcCCCcCCEEE
Confidence            57999999999987554443  3688999999999987763331  12     3577888887632  2  234799988


Q ss_pred             hhhhccCChhHHHHHHHHHHhh
Q 042119          208 LAALVGMSKEEKLTILGHIRKY  229 (286)
Q Consensus       208 ~aalvg~~~~~k~~vl~~l~~~  229 (286)
                      .+..  -+  .-.-++-.++..
T Consensus        72 a~t~--~d--~~N~i~~~la~~   89 (225)
T COG0569          72 AATG--ND--EVNSVLALLALK   89 (225)
T ss_pred             EeeC--CC--HHHHHHHHHHHH
Confidence            5532  22  222355555544

>cd08246 crotonyl_coA_red crotonyl-CoA reductase

Probab=94.27  E-value=0.1  Score=49.88  Aligned_cols=46  Identities=17%  Similarity=0.181  Sum_probs=40.2

Q ss_pred             CCCCCCEEEEecc-CCChhhHHHHHhhcCCCcEEEEEeCChHHHHHHHH
Q 042119          127 GVVQPKKVAFVGS-GPMPLTSIIMAKHHLTSTHFDNFDIDEAANDVARS  174 (286)
Q Consensus       127 ~~~~~~~VL~IG~-G~lp~tai~lA~~~~~g~~V~~iDid~~ai~~Ar~  174 (286)
                      .+.++.+|+..|+ |++|..++.+|++  .|+++++++.+++..+.+++
T Consensus       190 ~~~~g~~vlV~ga~g~iG~a~~~lak~--~G~~vv~~~~s~~~~~~~~~  236 (393)
T cd08246         190 TVKPGDNVLIWGASGGLGSMAIQLARA--AGANPVAVVSSEEKAEYCRA  236 (393)
T ss_pred             cCCCCCEEEEECCCcHHHHHHHHHHHH--cCCeEEEEeCCHHHHHHHHH
Confidence            4577899999997 9999999999994  79999999999998888876

Crotonyl-CoA reductase, a member of the medium chain dehydrogenase/reductase family, catalyzes the NADPH-dependent conversion of crotonyl-CoA to butyryl-CoA, a step in (2S)-methylmalonyl-CoA production for straight-chain fatty acid biosynthesis. Like enoyl reductase, another enzyme in fatty acid synthesis, crotonyl-CoA reductase is a member of the zinc-dependent alcohol dehydrogenase-like medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossma

>PLN02350 phosphogluconate dehydrogenase (decarboxylating)

Probab=94.26  E-value=0.19  Score=50.36  Aligned_cols=99  Identities=9%  Similarity=0.166  Sum_probs=64.5

Q ss_pred             CEEEEeccCCChhh-HHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEccccchhhcCCCcceeehhh
Q 042119          132 KKVAFVGSGPMPLT-SIIMAKHHLTSTHFDNFDIDEAANDVARSIVASDAEFEGRMKFLTRDIMEVKEQLGEYDCIFLAA  210 (286)
Q Consensus       132 ~~VL~IG~G~lp~t-ai~lA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~g~l~~~i~f~~~D~~~~~~~l~~fD~V~~aa  210 (286)
                      .+|-+||.|.||.. +.-|++   .|.+|+++|++++..+...+.....|.  ..+ ..+.++.++...+...|+||++.
T Consensus         7 ~~IG~IGLG~MG~~mA~nL~~---~G~~V~V~NRt~~k~~~l~~~~~~~Ga--~~~-~~a~s~~e~v~~l~~~dvIi~~v   80 (493)
T PLN02350          7 SRIGLAGLAVMGQNLALNIAE---KGFPISVYNRTTSKVDETVERAKKEGN--LPL-YGFKDPEDFVLSIQKPRSVIILV   80 (493)
T ss_pred             CCEEEEeeHHHHHHHHHHHHh---CCCeEEEECCCHHHHHHHHHhhhhcCC--ccc-ccCCCHHHHHhcCCCCCEEEEEC
Confidence            57999999988854 223333   789999999999887654443222251  111 23345556665666689999753


Q ss_pred             hccCChhHHHHHHHHHHhhccCCcEEEEe
Q 042119          211 LVGMSKEEKLTILGHIRKYMKDGGILLVR  239 (286)
Q Consensus       211 lvg~~~~~k~~vl~~l~~~l~pgg~lv~r  239 (286)
                      .-+   +.=..+++.+...|+||.++|--
T Consensus        81 ~~~---~aV~~Vi~gl~~~l~~G~iiID~  106 (493)
T PLN02350         81 KAG---APVDQTIKALSEYMEPGDCIIDG  106 (493)
T ss_pred             CCc---HHHHHHHHHHHhhcCCCCEEEEC
Confidence            211   33346778889999998877653

>cd08287 FDH_like_ADH3 formaldehyde dehydrogenase (FDH)-like

Probab=94.26  E-value=0.21  Score=46.38  Aligned_cols=101  Identities=19%  Similarity=0.193  Sum_probs=66.1

Q ss_pred             cCCCCCCEEEEeccCCChhhHHHHHhhcCCCcE-EEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEccc-cchhh--cCC
Q 042119          126 NGVVQPKKVAFVGSGPMPLTSIIMAKHHLTSTH-FDNFDIDEAANDVARSIVASDAEFEGRMKFLTRDI-MEVKE--QLG  201 (286)
Q Consensus       126 ~~~~~~~~VL~IG~G~lp~tai~lA~~~~~g~~-V~~iDid~~ai~~Ar~~~~~~g~l~~~i~f~~~D~-~~~~~--~l~  201 (286)
                      ....++.+|+..|+|++|..++.+|++  .|.. |++++.+++..+.+++    +| ...-+....-+. .++..  .-.
T Consensus       164 ~~~~~g~~vlI~g~g~vg~~~~~lak~--~G~~~v~~~~~~~~~~~~~~~----~g-a~~v~~~~~~~~~~~i~~~~~~~  236 (345)
T cd08287         164 AGVRPGSTVVVVGDGAVGLCAVLAAKR--LGAERIIAMSRHEDRQALARE----FG-ATDIVAERGEEAVARVRELTGGV  236 (345)
T ss_pred             cCCCCCCEEEEECCCHHHHHHHHHHHH--cCCCEEEEECCCHHHHHHHHH----cC-CceEecCCcccHHHHHHHhcCCC
Confidence            455778999999999999999999994  6774 9999999876655554    55 211122211111 11111  112


Q ss_pred             CcceeehhhhccCChhHHHHHHHHHHhhccCCcEEEEee
Q 042119          202 EYDCIFLAALVGMSKEEKLTILGHIRKYMKDGGILLVRS  240 (286)
Q Consensus       202 ~fD~V~~aalvg~~~~~k~~vl~~l~~~l~pgg~lv~r~  240 (286)
                      ++|+++.+  ++    . ...+....+.++++|.++.-+
T Consensus       237 ~~d~il~~--~g----~-~~~~~~~~~~l~~~g~~v~~g  268 (345)
T cd08287         237 GADAVLEC--VG----T-QESMEQAIAIARPGGRVGYVG  268 (345)
T ss_pred             CCCEEEEC--CC----C-HHHHHHHHHhhccCCEEEEec
Confidence            58988844  22    1 247788899999999998765

This group contains proteins identified as alcohol dehydrogenases and glutathione-dependant formaldehyde dehydrogenases (FDH) of the zinc-dependent/medium chain alcohol dehydrogenase family. The MDR family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. FDH converts formaldehyde and NAD to formate and NADH. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit.

>PLN02712 arogenate dehydrogenase

Probab=94.25  E-value=0.23  Score=51.65  Aligned_cols=90  Identities=14%  Similarity=0.123  Sum_probs=56.2

Q ss_pred             CCCCEEEEeccCCChhhHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEccccchhhcCCCcceeeh
Q 042119          129 VQPKKVAFVGSGPMPLTSIIMAKHHLTSTHFDNFDIDEAANDVARSIVASDAEFEGRMKFLTRDIMEVKEQLGEYDCIFL  208 (286)
Q Consensus       129 ~~~~~VL~IG~G~lp~tai~lA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~g~l~~~i~f~~~D~~~~~~~l~~fD~V~~  208 (286)
                      +.+.+|.+||+|.+|.+.....+  ..|.+|+++|.+... +.    +...|     +.+ ..|..++..  ...|+|++
T Consensus        50 ~~~~kIgIIG~G~mG~slA~~L~--~~G~~V~~~dr~~~~-~~----A~~~G-----v~~-~~d~~e~~~--~~aDvViL  114 (667)
T PLN02712         50 TTQLKIAIIGFGNYGQFLAKTLI--SQGHTVLAHSRSDHS-LA----ARSLG-----VSF-FLDPHDLCE--RHPDVILL  114 (667)
T ss_pred             CCCCEEEEEccCHHHHHHHHHHH--HCCCEEEEEeCCHHH-HH----HHHcC-----CEE-eCCHHHHhh--cCCCEEEE
Confidence            45679999999988765433322  257899999998543 22    33456     222 334332211  35899998


Q ss_pred             hhhccCChhHHHHHHHHHH-hhccCCcEEE
Q 042119          209 AALVGMSKEEKLTILGHIR-KYMKDGGILL  237 (286)
Q Consensus       209 aalvg~~~~~k~~vl~~l~-~~l~pgg~lv  237 (286)
                      +.-+    ..-.++++.+. ..++||.+|+
T Consensus       115 avP~----~~~~~vl~~l~~~~l~~g~iVv  140 (667)
T PLN02712        115 CTSI----ISTENVLKSLPLQRLKRNTLFV  140 (667)
T ss_pred             cCCH----HHHHHHHHhhhhhcCCCCeEEE
Confidence            8543    45567777775 5688887554

>PRK11199 tyrA bifunctional chorismate mutase/prephenate dehydrogenase; Provisional

Probab=94.22  E-value=0.59  Score=45.08  Aligned_cols=77  Identities=13%  Similarity=0.201  Sum_probs=51.7

Q ss_pred             CCCEEEEec-cCCChhhHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEccccchhhcCCCcceeeh
Q 042119          130 QPKKVAFVG-SGPMPLTSIIMAKHHLTSTHFDNFDIDEAANDVARSIVASDAEFEGRMKFLTRDIMEVKEQLGEYDCIFL  208 (286)
Q Consensus       130 ~~~~VL~IG-~G~lp~tai~lA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~g~l~~~i~f~~~D~~~~~~~l~~fD~V~~  208 (286)
                      ...+|..|| .|.+|.+.....+  ..|..|+++|.++.                       .+..   ....+.|+|++
T Consensus        97 ~~~~I~IiGG~GlmG~slA~~l~--~~G~~V~~~d~~~~-----------------------~~~~---~~~~~aDlVil  148 (374)
T PRK11199         97 DLRPVVIVGGKGQLGRLFAKMLT--LSGYQVRILEQDDW-----------------------DRAE---DILADAGMVIV  148 (374)
T ss_pred             ccceEEEEcCCChhhHHHHHHHH--HCCCeEEEeCCCcc-----------------------hhHH---HHHhcCCEEEE
Confidence            447999999 8988876544333  26789999998631                       0111   11246899998


Q ss_pred             hhhccCChhHHHHHHHHHHhhccCCcEEEEe
Q 042119          209 AALVGMSKEEKLTILGHIRKYMKDGGILLVR  239 (286)
Q Consensus       209 aalvg~~~~~k~~vl~~l~~~l~pgg~lv~r  239 (286)
                      +.-+    ....++++.+.+ ++||.+|+--
T Consensus       149 avP~----~~~~~~~~~l~~-l~~~~iv~Dv  174 (374)
T PRK11199        149 SVPI----HLTEEVIARLPP-LPEDCILVDL  174 (374)
T ss_pred             eCcH----HHHHHHHHHHhC-CCCCcEEEEC
Confidence            8654    456778888888 7777766543

>PF05711 TylF: Macrocin-O-methyltransferase (TylF); InterPro: IPR008884 This family consists of bacterial macrocin O-methyltransferase (TylF) proteins

Probab=94.21  E-value=0.14  Score=46.83  Aligned_cols=109  Identities=15%  Similarity=0.126  Sum_probs=66.4

Q ss_pred             CCCCEEEEeccCCChhhHHHHHhh--c--CCCcEEEEEeCC--------------------------hHHHHHHHHHHHh
Q 042119          129 VQPKKVAFVGSGPMPLTSIIMAKH--H--LTSTHFDNFDID--------------------------EAANDVARSIVAS  178 (286)
Q Consensus       129 ~~~~~VL~IG~G~lp~tai~lA~~--~--~~g~~V~~iDid--------------------------~~ai~~Ar~~~~~  178 (286)
                      .-|..|++.|+-- |-|++.++.-  .  .++-+|.++|-=                          ....+..++++++
T Consensus        73 ~vpGdivE~GV~r-Ggs~~~~~~~l~~~~~~~R~i~lfDSFeG~P~~~~~d~~~d~~~~~~~~~~~~~~s~e~V~~n~~~  151 (248)
T PF05711_consen   73 DVPGDIVECGVWR-GGSSILMRAVLEAYGNPDRRIYLFDSFEGFPEPDEEDYPADKGWEFHEYNGYLAVSLEEVRENFAR  151 (248)
T ss_dssp             TS-SEEEEE--TT-SHHHHHHHHHHHCTTTTS--EEEEE-SSSSSS--CCCTCCCCHCTCCGCCHHCTHHHHHHHHCCCC
T ss_pred             CCCeEEEEEeeCC-CHHHHHHHHHHHHhCCCCCEEEEEeCCCCCCCCccccccccchhhhhhcccccccCHHHHHHHHHH
Confidence            5678999999975 5566665431  1  245567777731                          1244555566666


Q ss_pred             cCCCCCCeEEEEccccchhhcC--CCcceeehhhhccCChhHHHHHHHHHHhhccCCcEEEEeec
Q 042119          179 DAEFEGRMKFLTRDIMEVKEQL--GEYDCIFLAALVGMSKEEKLTILGHIRKYMKDGGILLVRSA  241 (286)
Q Consensus       179 ~g~l~~~i~f~~~D~~~~~~~l--~~fD~V~~aalvg~~~~~k~~vl~~l~~~l~pgg~lv~r~~  241 (286)
                      .|.+.++++|+.|+..+-....  ..+-++.++.-+   -++-..+|+.+..+|.|||+|++.+.
T Consensus       152 ~gl~~~~v~~vkG~F~dTLp~~p~~~IAll~lD~Dl---YesT~~aLe~lyprl~~GGiIi~DDY  213 (248)
T PF05711_consen  152 YGLLDDNVRFVKGWFPDTLPDAPIERIALLHLDCDL---YESTKDALEFLYPRLSPGGIIIFDDY  213 (248)
T ss_dssp             TTTSSTTEEEEES-HHHHCCC-TT--EEEEEE---S---HHHHHHHHHHHGGGEEEEEEEEESST
T ss_pred             cCCCcccEEEECCcchhhhccCCCccEEEEEEeccc---hHHHHHHHHHHHhhcCCCeEEEEeCC
Confidence            6755679999999986544322  245556665433   25666899999999999999999874

TylF is responsible for the methylation of macrocin to produce tylosin. Tylosin is a macrolide antibiotic used in veterinary medicine to treat infections caused by Gram-positive bacteria and as an animal growth promoter in the Sus scrofa (Pig) industry. It is produced by several Streptomyces species. As with other macrolides, the antibiotic activity of tylosin is due to the inhibition of protein biosynthesis by a mechanism that involves the binding of tylosin to the ribosome, preventing the formation of the mRNA-aminoacyl-tRNA-ribosome complex [].; PDB: 3TOS_D 2WK1_A.

>cd08279 Zn_ADH_class_III Class III alcohol dehydrogenase

Probab=94.21  E-value=0.19  Score=47.50  Aligned_cols=101  Identities=20%  Similarity=0.171  Sum_probs=66.4

Q ss_pred             cCCCCCCEEEEeccCCChhhHHHHHhhcCCCcE-EEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEccccc-hhhc--CC
Q 042119          126 NGVVQPKKVAFVGSGPMPLTSIIMAKHHLTSTH-FDNFDIDEAANDVARSIVASDAEFEGRMKFLTRDIME-VKEQ--LG  201 (286)
Q Consensus       126 ~~~~~~~~VL~IG~G~lp~tai~lA~~~~~g~~-V~~iDid~~ai~~Ar~~~~~~g~l~~~i~f~~~D~~~-~~~~--l~  201 (286)
                      ..+.++.+||..|+|++|..++.+|++  .|++ |++++.+++..+.+++    +| ...-+.....+..+ +...  -.
T Consensus       178 ~~~~~g~~vLI~g~g~vG~a~i~lak~--~G~~~Vi~~~~~~~~~~~~~~----~g-~~~vv~~~~~~~~~~l~~~~~~~  250 (363)
T cd08279         178 ARVRPGDTVAVIGCGGVGLNAIQGARI--AGASRIIAVDPVPEKLELARR----FG-ATHTVNASEDDAVEAVRDLTDGR  250 (363)
T ss_pred             cCCCCCCEEEEECCCHHHHHHHHHHHH--cCCCcEEEEcCCHHHHHHHHH----hC-CeEEeCCCCccHHHHHHHHcCCC
Confidence            345788999999999999999999994  6786 9999999888776643    45 21111111112111 1111  13


Q ss_pred             CcceeehhhhccCChhHHHHHHHHHHhhccCCcEEEEee
Q 042119          202 EYDCIFLAALVGMSKEEKLTILGHIRKYMKDGGILLVRS  240 (286)
Q Consensus       202 ~fD~V~~aalvg~~~~~k~~vl~~l~~~l~pgg~lv~r~  240 (286)
                      .+|+++-+..      . ...+....+.++++|+++.-.
T Consensus       251 ~vd~vld~~~------~-~~~~~~~~~~l~~~G~~v~~g  282 (363)
T cd08279         251 GADYAFEAVG------R-AATIRQALAMTRKGGTAVVVG  282 (363)
T ss_pred             CCCEEEEcCC------C-hHHHHHHHHHhhcCCeEEEEe
Confidence            5998874431      1 246778899999999988754

Glutathione-dependent formaldehyde dehydrogenases (FDHs, Class III ADH) are members of the zinc-dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. Class III ADH are also known as glutathione-dependent formaldehyde dehydrogenase (FDH), which convert aldehydes to corresponding carboxylic acid and alcohol. ADH is a me

>PRK08217 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional

Probab=94.17  E-value=0.29  Score=42.95  Aligned_cols=77  Identities=9%  Similarity=0.123  Sum_probs=52.1

Q ss_pred             CCCEEEEecc-CCChhhHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEccccchh----------h
Q 042119          130 QPKKVAFVGS-GPMPLTSIIMAKHHLTSTHFDNFDIDEAANDVARSIVASDAEFEGRMKFLTRDIMEVK----------E  198 (286)
Q Consensus       130 ~~~~VL~IG~-G~lp~tai~lA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~g~l~~~i~f~~~D~~~~~----------~  198 (286)
                      ++++++.+|+ |.+|........  ..|++|+.+|.+++..+.+.+.++..|   .++.++..|+.+..          .
T Consensus         4 ~~~~~lItG~~g~iG~~~a~~l~--~~G~~vi~~~r~~~~~~~~~~~~~~~~---~~~~~~~~D~~~~~~~~~~~~~~~~   78 (253)
T PRK08217          4 KDKVIVITGGAQGLGRAMAEYLA--QKGAKLALIDLNQEKLEEAVAECGALG---TEVRGYAANVTDEEDVEATFAQIAE   78 (253)
T ss_pred             CCCEEEEECCCchHHHHHHHHHH--HCCCEEEEEeCCHHHHHHHHHHHHhcC---CceEEEEcCCCCHHHHHHHHHHHHH
Confidence            4679999997 555554433222  268999999999987776666666555   57888899976521          1


Q ss_pred             cCCCcceeehhhh
Q 042119          199 QLGEYDCIFLAAL  211 (286)
Q Consensus       199 ~l~~fD~V~~aal  211 (286)
                      .++.+|+|+..+.
T Consensus        79 ~~~~id~vi~~ag   91 (253)
T PRK08217         79 DFGQLNGLINNAG   91 (253)
T ss_pred             HcCCCCEEEECCC
Confidence            2245798876543

>TIGR01915 npdG NADPH-dependent F420 reductase

Probab=94.17  E-value=0.61  Score=41.27  Aligned_cols=102  Identities=17%  Similarity=0.124  Sum_probs=57.6

Q ss_pred             CEEEEec-cCCChhhHHHHHhhcCCCcEEEEEeCChHHHHHHHH-HHHhcCCCCCCeEEEEccccchhhcCCCcceeehh
Q 042119          132 KKVAFVG-SGPMPLTSIIMAKHHLTSTHFDNFDIDEAANDVARS-IVASDAEFEGRMKFLTRDIMEVKEQLGEYDCIFLA  209 (286)
Q Consensus       132 ~~VL~IG-~G~lp~tai~lA~~~~~g~~V~~iDid~~ai~~Ar~-~~~~~g~l~~~i~f~~~D~~~~~~~l~~fD~V~~a  209 (286)
                      ++|.+|| +|.+|.+......  ..|.+|+.++.+++..+...+ .....+..+-.++....+..   ......|+|+++
T Consensus         1 MkI~IIGG~G~mG~ala~~L~--~~G~~V~v~~r~~~~~~~l~~~~~~~~~~~g~~~~~~~~~~~---ea~~~aDvVila   75 (219)
T TIGR01915         1 MKIAVLGGTGDQGKGLALRLA--KAGNKIIIGSRDLEKAEEAAAKALEELGHGGSDIKVTGADNA---EAAKRADVVILA   75 (219)
T ss_pred             CEEEEEcCCCHHHHHHHHHHH--hCCCEEEEEEcCHHHHHHHHHHHHhhccccCCCceEEEeChH---HHHhcCCEEEEE
Confidence            4799997 8988765433322  267899999999987655443 22222210111223222322   233578999987


Q ss_pred             hhccCChhHHHHHHHHHHhhccCCcEEEEeecCcc
Q 042119          210 ALVGMSKEEKLTILGHIRKYMKDGGILLVRSAKGA  244 (286)
Q Consensus       210 alvg~~~~~k~~vl~~l~~~l~pgg~lv~r~~~g~  244 (286)
                      .--    ..-..+++.+...++ + .+++.-.+|.
T Consensus        76 vp~----~~~~~~l~~l~~~l~-~-~vvI~~~ngi  104 (219)
T TIGR01915        76 VPW----DHVLKTLESLRDELS-G-KLVISPVVPL  104 (219)
T ss_pred             CCH----HHHHHHHHHHHHhcc-C-CEEEEeccCc
Confidence            432    334466677766654 3 5666555553

This model represents a subset of a parent family described by Pfam model pfam03807. Unlike the parent family, members of this family are found only in species with evidence of coenzyme F420. All members of this family are believed to act as NADPH-dependent F420 reductase.

>TIGR01759 MalateDH-SF1 malate dehydrogenase

Probab=94.16  E-value=0.36  Score=45.84  Aligned_cols=108  Identities=19%  Similarity=0.180  Sum_probs=66.1

Q ss_pred             CCCCEEEEecc-CCChhhHHHHHhhcCCCc-----EEEEEeCChH---HHHHHHHHHHhcCCCCCCeEEEEccccchhhc
Q 042119          129 VQPKKVAFVGS-GPMPLTSIIMAKHHLTST-----HFDNFDIDEA---ANDVARSIVASDAEFEGRMKFLTRDIMEVKEQ  199 (286)
Q Consensus       129 ~~~~~VL~IG~-G~lp~tai~lA~~~~~g~-----~V~~iDid~~---ai~~Ar~~~~~~g~l~~~i~f~~~D~~~~~~~  199 (286)
                      +.|-+|..||+ |..|.+..........-.     +++-+|+.+.   +...|..+..........+++..+|    ..+
T Consensus         1 ~~p~KV~IIGa~G~VG~~~a~~l~~~~~~~~~~~~el~L~Di~~~~~~a~g~a~Dl~~~~~~~~~~~~i~~~~----~~~   76 (323)
T TIGR01759         1 KKPVRVAVTGAAGQIGYSLLFRIASGELFGKDQPVVLHLLDIPPAMKALEGVAMELEDCAFPLLAGVVATTDP----EEA   76 (323)
T ss_pred             CCCeEEEEECCCcHHHHHHHHHHHhCCcccCCCccEEEEEecCCcccccchHHHHHhhccccccCCcEEecCh----HHH
Confidence            35789999998 998888655443111112     7999999642   5677777766552122345444333    345


Q ss_pred             CCCcceeehhhhc----cCChhH--------HHHHHHHHHhhccCCcEEEEee
Q 042119          200 LGEYDCIFLAALV----GMSKEE--------KLTILGHIRKYMKDGGILLVRS  240 (286)
Q Consensus       200 l~~fD~V~~aalv----g~~~~~--------k~~vl~~l~~~l~pgg~lv~r~  240 (286)
                      +.+.|+|++.+-+    ||+..+        -.++...+.++-.|.|++++-+
T Consensus        77 ~~daDvVVitAG~~~k~g~tR~dll~~Na~i~~~i~~~i~~~~~~~~iiivvs  129 (323)
T TIGR01759        77 FKDVDAALLVGAFPRKPGMERADLLSKNGKIFKEQGKALNKVAKKDVKVLVVG  129 (323)
T ss_pred             hCCCCEEEEeCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHhhCCCCeEEEEeC
Confidence            6789999887755    444433        2344555555533488888765

This model represents a family of malate dehydrogenases in bacteria and eukaryotes which utilize either NAD or NADP depending on the species and context. MDH interconverts malate and oxaloacetate and is a part of the citric acid cycle as well as the C4 cycle in certain photosynthetic organisms.

>cd08240 6_hydroxyhexanoate_dh_like 6-hydroxyhexanoate dehydrogenase

Probab=94.15  E-value=0.23  Score=46.34  Aligned_cols=98  Identities=18%  Similarity=0.246  Sum_probs=64.4

Q ss_pred             CCCCEEEEeccCCChhhHHHHHhhcCCCc-EEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEcccc-chhhcC-CCcce
Q 042119          129 VQPKKVAFVGSGPMPLTSIIMAKHHLTST-HFDNFDIDEAANDVARSIVASDAEFEGRMKFLTRDIM-EVKEQL-GEYDC  205 (286)
Q Consensus       129 ~~~~~VL~IG~G~lp~tai~lA~~~~~g~-~V~~iDid~~ai~~Ar~~~~~~g~l~~~i~f~~~D~~-~~~~~l-~~fD~  205 (286)
                      .++++|+..|+|++|..++.+|++  .|+ +|+.++.+++..+.+++    .| ...-+.....+.. .+.... +++|+
T Consensus       174 ~~~~~vlI~g~g~vg~~~~~~a~~--~G~~~v~~~~~~~~~~~~~~~----~g-~~~~~~~~~~~~~~~~~~~~~~~~d~  246 (350)
T cd08240         174 VADEPVVIIGAGGLGLMALALLKA--LGPANIIVVDIDEAKLEAAKA----AG-ADVVVNGSDPDAAKRIIKAAGGGVDA  246 (350)
T ss_pred             CCCCEEEEECCcHHHHHHHHHHHH--cCCCeEEEEeCCHHHHHHHHH----hC-CcEEecCCCccHHHHHHHHhCCCCcE
Confidence            467899999999999999999994  688 79999999888777654    45 2111111111110 111111 25899


Q ss_pred             eehhhhccCChhHHHHHHHHHHhhccCCcEEEEee
Q 042119          206 IFLAALVGMSKEEKLTILGHIRKYMKDGGILLVRS  240 (286)
Q Consensus       206 V~~aalvg~~~~~k~~vl~~l~~~l~pgg~lv~r~  240 (286)
                      |+-+.  |   ..  ..+....+.|+++|.++.-+
T Consensus       247 vid~~--g---~~--~~~~~~~~~l~~~g~~v~~g  274 (350)
T cd08240         247 VIDFV--N---NS--ATASLAFDILAKGGKLVLVG  274 (350)
T ss_pred             EEECC--C---CH--HHHHHHHHHhhcCCeEEEEC
Confidence            88442  1   11  36788899999999998654

6-hydroxyhexanoate dehydrogenase, an enzyme of the zinc-dependent alcohol dehydrogenase-like family of medium chain dehydrogenases/reductases catalyzes the conversion of 6-hydroxyhexanoate and NAD(+) to 6-oxohexanoate + NADH and H+. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzy

>PRK12779 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Provisional

Probab=94.11  E-value=0.12  Score=55.77  Aligned_cols=76  Identities=18%  Similarity=0.176  Sum_probs=49.4

Q ss_pred             CCCCEEEEeccCCChhhHHHHHhhcCCCcEEEEEeCCh-----------------HHHHHHHHHHHhcCCCCCCeEEEEc
Q 042119          129 VQPKKVAFVGSGPMPLTSIIMAKHHLTSTHFDNFDIDE-----------------AANDVARSIVASDAEFEGRMKFLTR  191 (286)
Q Consensus       129 ~~~~~VL~IG~G~lp~tai~lA~~~~~g~~V~~iDid~-----------------~ai~~Ar~~~~~~g~l~~~i~f~~~  191 (286)
                      ..+++|+.||+||-|+++.....+  .|..||.+|..+                 +.++.-.+.++..|     ++|.++
T Consensus       304 ~~gkkVaVIGsGPAGLsaA~~Lar--~G~~VtVfE~~~~~GG~l~yGIP~~rlp~~vi~~~i~~l~~~G-----v~f~~n  376 (944)
T PRK12779        304 AVKPPIAVVGSGPSGLINAYLLAV--EGFPVTVFEAFHDLGGVLRYGIPEFRLPNQLIDDVVEKIKLLG-----GRFVKN  376 (944)
T ss_pred             CCCCeEEEECCCHHHHHHHHHHHH--CCCeEEEEeeCCCCCceEEccCCCCcChHHHHHHHHHHHHhhc-----CeEEEe
Confidence            457999999999999998766553  789999998653                 33444445566666     344433


Q ss_pred             ccc--ch-hhcC-C-Ccceeehhhh
Q 042119          192 DIM--EV-KEQL-G-EYDCIFLAAL  211 (286)
Q Consensus       192 D~~--~~-~~~l-~-~fD~V~~aal  211 (286)
                      -..  ++ ..++ . +||.||++.-
T Consensus       377 ~~vG~dit~~~l~~~~yDAV~LAtG  401 (944)
T PRK12779        377 FVVGKTATLEDLKAAGFWKIFVGTG  401 (944)
T ss_pred             EEeccEEeHHHhccccCCEEEEeCC
Confidence            211  11 1122 2 6999998754

>cd08289 MDR_yhfp_like Yhfp putative quinone oxidoreductases

Probab=94.10  E-value=0.23  Score=45.55  Aligned_cols=95  Identities=12%  Similarity=0.116  Sum_probs=63.6

Q ss_pred             CCCEEEEecc-CCChhhHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEccc--cchhh-cCCCcce
Q 042119          130 QPKKVAFVGS-GPMPLTSIIMAKHHLTSTHFDNFDIDEAANDVARSIVASDAEFEGRMKFLTRDI--MEVKE-QLGEYDC  205 (286)
Q Consensus       130 ~~~~VL~IG~-G~lp~tai~lA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~g~l~~~i~f~~~D~--~~~~~-~l~~fD~  205 (286)
                      .+.+|+..|+ |++|..++.+|++  .|++|++++.+++..+.+++    +| . +.+ +...+.  ..+.. .-..+|+
T Consensus       146 ~~~~vlI~g~~g~vg~~~~~~a~~--~g~~v~~~~~~~~~~~~~~~----~g-~-~~v-~~~~~~~~~~~~~~~~~~~d~  216 (326)
T cd08289         146 EQGPVLVTGATGGVGSLAVSILAK--LGYEVVASTGKADAADYLKK----LG-A-KEV-IPREELQEESIKPLEKQRWAG  216 (326)
T ss_pred             CCCEEEEEcCCchHHHHHHHHHHH--CCCeEEEEecCHHHHHHHHH----cC-C-CEE-EcchhHHHHHHHhhccCCcCE
Confidence            4679999998 9999999999994  68999999999987666644    56 2 211 111111  11111 1135899


Q ss_pred             eehhhhccCChhHHHHHHHHHHhhccCCcEEEEeec
Q 042119          206 IFLAALVGMSKEEKLTILGHIRKYMKDGGILLVRSA  241 (286)
Q Consensus       206 V~~aalvg~~~~~k~~vl~~l~~~l~pgg~lv~r~~  241 (286)
                      |+-+.  |    .  ..++...+.|+++|+++.-..
T Consensus       217 vld~~--g----~--~~~~~~~~~l~~~G~~i~~g~  244 (326)
T cd08289         217 AVDPV--G----G--KTLAYLLSTLQYGGSVAVSGL  244 (326)
T ss_pred             EEECC--c----H--HHHHHHHHHhhcCCEEEEEee
Confidence            88442  2    2  256778889999999988753

yhfp putative quinone oxidoreductases (QOR). QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR actin the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH

>KOG0022 consensus Alcohol dehydrogenase, class III [Secondary metabolites biosynthesis, transport and catabolism]

Probab=94.09  E-value=0.1  Score=49.34  Aligned_cols=100  Identities=20%  Similarity=0.189  Sum_probs=66.2

Q ss_pred             CCCCCCEEEEeccCCChhhHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEE--EccccchhhcC--CC
Q 042119          127 GVVQPKKVAFVGSGPMPLTSIIMAKHHLTSTHFDNFDIDEAANDVARSIVASDAEFEGRMKFL--TRDIMEVKEQL--GE  202 (286)
Q Consensus       127 ~~~~~~~VL~IG~G~lp~tai~lA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~g~l~~~i~f~--~~D~~~~~~~l--~~  202 (286)
                      .+.++++|+..|.|..|++.+.-|+ +.-..+++|||++++--++|+++    | ..+=|+-.  +..+.+...++  .+
T Consensus       189 kv~~GstvAVfGLG~VGLav~~Gak-a~GAsrIIgvDiN~~Kf~~ak~f----G-aTe~iNp~d~~~~i~evi~EmTdgG  262 (375)
T KOG0022|consen  189 KVEPGSTVAVFGLGGVGLAVAMGAK-AAGASRIIGVDINPDKFEKAKEF----G-ATEFINPKDLKKPIQEVIIEMTDGG  262 (375)
T ss_pred             ccCCCCEEEEEecchHHHHHHHhHH-hcCcccEEEEecCHHHHHHHHhc----C-cceecChhhccccHHHHHHHHhcCC
Confidence            3578999999999999999999999 45557899999999999999884    5 22111111  11233333333  46


Q ss_pred             cceeehhhhccCChhHHHHHHHHHHhhccCC-cEEEEe
Q 042119          203 YDCIFLAALVGMSKEEKLTILGHIRKYMKDG-GILLVR  239 (286)
Q Consensus       203 fD~V~~aalvg~~~~~k~~vl~~l~~~l~pg-g~lv~r  239 (286)
                      +|.-|.+.-       ..+++.+.....+.| |.-++-
T Consensus       263 vDysfEc~G-------~~~~m~~al~s~h~GwG~sv~i  293 (375)
T KOG0022|consen  263 VDYSFECIG-------NVSTMRAALESCHKGWGKSVVI  293 (375)
T ss_pred             ceEEEEecC-------CHHHHHHHHHHhhcCCCeEEEE
Confidence            888886532       123555555555677 665554

>PRK13243 glyoxylate reductase; Reviewed

Probab=94.09  E-value=0.12  Score=49.20  Aligned_cols=92  Identities=22%  Similarity=0.178  Sum_probs=60.7

Q ss_pred             CCCCEEEEeccCCChhhHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEccccchhhcCCCcceeeh
Q 042119          129 VQPKKVAFVGSGPMPLTSIIMAKHHLTSTHFDNFDIDEAANDVARSIVASDAEFEGRMKFLTRDIMEVKEQLGEYDCIFL  208 (286)
Q Consensus       129 ~~~~~VL~IG~G~lp~tai~lA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~g~l~~~i~f~~~D~~~~~~~l~~fD~V~~  208 (286)
                      -.+++|..||.|.+|......++  ..|.+|.++|.++....     ....|     +.+  .+..   .-+...|+|++
T Consensus       148 L~gktvgIiG~G~IG~~vA~~l~--~~G~~V~~~d~~~~~~~-----~~~~~-----~~~--~~l~---ell~~aDiV~l  210 (333)
T PRK13243        148 VYGKTIGIIGFGRIGQAVARRAK--GFGMRILYYSRTRKPEA-----EKELG-----AEY--RPLE---ELLRESDFVSL  210 (333)
T ss_pred             CCCCEEEEECcCHHHHHHHHHHH--HCCCEEEEECCCCChhh-----HHHcC-----CEe--cCHH---HHHhhCCEEEE
Confidence            35899999999999987666665  36899999999875421     12233     122  2332   33457899997


Q ss_pred             hhhccCChhHHHHHHHHHHhhccCCcEEEEe
Q 042119          209 AALVGMSKEEKLTILGHIRKYMKDGGILLVR  239 (286)
Q Consensus       209 aalvg~~~~~k~~vl~~l~~~l~pgg~lv~r  239 (286)
                      +.-.  +.+.+.-+-++....||||++|+--
T Consensus       211 ~lP~--t~~T~~~i~~~~~~~mk~ga~lIN~  239 (333)
T PRK13243        211 HVPL--TKETYHMINEERLKLMKPTAILVNT  239 (333)
T ss_pred             eCCC--ChHHhhccCHHHHhcCCCCeEEEEC
Confidence            7532  3333433446788899999888764

>PRK11559 garR tartronate semialdehyde reductase; Provisional

Probab=94.07  E-value=0.22  Score=45.93  Aligned_cols=88  Identities=17%  Similarity=0.129  Sum_probs=54.9

Q ss_pred             CEEEEeccCCChhh-HHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEccccchhhcCCCcceeehhh
Q 042119          132 KKVAFVGSGPMPLT-SIIMAKHHLTSTHFDNFDIDEAANDVARSIVASDAEFEGRMKFLTRDIMEVKEQLGEYDCIFLAA  210 (286)
Q Consensus       132 ~~VL~IG~G~lp~t-ai~lA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~g~l~~~i~f~~~D~~~~~~~l~~fD~V~~aa  210 (286)
                      ++|.+||+|.+|.. +..+++   .|.+|+++|.+++..+.+.    ..|     +.+ +.+..+   ...+.|+|+++.
T Consensus         3 ~~IgviG~G~mG~~~a~~l~~---~g~~v~~~d~~~~~~~~~~----~~g-----~~~-~~~~~e---~~~~~d~vi~~v   66 (296)
T PRK11559          3 MKVGFIGLGIMGKPMSKNLLK---AGYSLVVYDRNPEAVAEVI----AAG-----AET-ASTAKA---VAEQCDVIITML   66 (296)
T ss_pred             ceEEEEccCHHHHHHHHHHHH---CCCeEEEEcCCHHHHHHHH----HCC-----Cee-cCCHHH---HHhcCCEEEEeC
Confidence            47999999998865 344444   7889999999998766543    234     111 223322   224689999774


Q ss_pred             hccCChhHHHHHH---HHHHhhccCCcEEEE
Q 042119          211 LVGMSKEEKLTIL---GHIRKYMKDGGILLV  238 (286)
Q Consensus       211 lvg~~~~~k~~vl---~~l~~~l~pgg~lv~  238 (286)
                      ...   ..-..++   +.+.+.+++|.+++-
T Consensus        67 p~~---~~~~~v~~~~~~~~~~~~~g~iiid   94 (296)
T PRK11559         67 PNS---PHVKEVALGENGIIEGAKPGTVVID   94 (296)
T ss_pred             CCH---HHHHHHHcCcchHhhcCCCCcEEEE
Confidence            321   1222333   456778888877764

>cd08241 QOR1 Quinone oxidoreductase (QOR)

Probab=94.06  E-value=0.35  Score=43.51  Aligned_cols=99  Identities=18%  Similarity=0.212  Sum_probs=64.4

Q ss_pred             CCCCCCEEEEecc-CCChhhHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEccccchhh---cCCC
Q 042119          127 GVVQPKKVAFVGS-GPMPLTSIIMAKHHLTSTHFDNFDIDEAANDVARSIVASDAEFEGRMKFLTRDIMEVKE---QLGE  202 (286)
Q Consensus       127 ~~~~~~~VL~IG~-G~lp~tai~lA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~g~l~~~i~f~~~D~~~~~~---~l~~  202 (286)
                      ...++.+|+..|+ |++|..++.+|++  .|++|++++.+++..+.+++    .| ...-+.....+..+...   .-..
T Consensus       136 ~~~~~~~vli~g~~~~~g~~~~~~a~~--~g~~v~~~~~~~~~~~~~~~----~g-~~~~~~~~~~~~~~~i~~~~~~~~  208 (323)
T cd08241         136 RLQPGETVLVLGAAGGVGLAAVQLAKA--LGARVIAAASSEEKLALARA----LG-ADHVIDYRDPDLRERVKALTGGRG  208 (323)
T ss_pred             CCCCCCEEEEEcCCchHHHHHHHHHHH--hCCEEEEEeCCHHHHHHHHH----cC-CceeeecCCccHHHHHHHHcCCCC
Confidence            4567899999998 8899998889984  78999999999988776644    45 21111111112111111   1135


Q ss_pred             cceeehhhhccCChhHHHHHHHHHHhhccCCcEEEEee
Q 042119          203 YDCIFLAALVGMSKEEKLTILGHIRKYMKDGGILLVRS  240 (286)
Q Consensus       203 fD~V~~aalvg~~~~~k~~vl~~l~~~l~pgg~lv~r~  240 (286)
                      +|+++.+.  +    .  ..+....+.++++|.++...
T Consensus       209 ~d~v~~~~--g----~--~~~~~~~~~~~~~g~~v~~~  238 (323)
T cd08241         209 VDVVYDPV--G----G--DVFEASLRSLAWGGRLLVIG  238 (323)
T ss_pred             cEEEEECc--c----H--HHHHHHHHhhccCCEEEEEc
Confidence            89888542  2    1  24556778889999988754

QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR acts in the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic

>cd05289 MDR_like_2 alcohol dehydrogenase and quinone reductase-like medium chain degydrogenases/reductases

Probab=94.04  E-value=0.41  Score=42.80  Aligned_cols=94  Identities=16%  Similarity=0.171  Sum_probs=61.2

Q ss_pred             CCCCCEEEEecc-CCChhhHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEccccchh--hcCCCcc
Q 042119          128 VVQPKKVAFVGS-GPMPLTSIIMAKHHLTSTHFDNFDIDEAANDVARSIVASDAEFEGRMKFLTRDIMEVK--EQLGEYD  204 (286)
Q Consensus       128 ~~~~~~VL~IG~-G~lp~tai~lA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~g~l~~~i~f~~~D~~~~~--~~l~~fD  204 (286)
                      ..++.+|+..|+ |++|..++.+|+.  .|.+|++++.++ ..+.+    +..| ..   .+......+..  ..-..+|
T Consensus       142 ~~~~~~vlv~g~~g~~g~~~~~~a~~--~g~~v~~~~~~~-~~~~~----~~~g-~~---~~~~~~~~~~~~~~~~~~~d  210 (309)
T cd05289         142 LKAGQTVLIHGAAGGVGSFAVQLAKA--RGARVIATASAA-NADFL----RSLG-AD---EVIDYTKGDFERAAAPGGVD  210 (309)
T ss_pred             CCCCCEEEEecCCchHHHHHHHHHHH--cCCEEEEEecch-hHHHH----HHcC-CC---EEEeCCCCchhhccCCCCce
Confidence            577899999996 8999999999984  789999998766 54444    3456 21   12211111111  1123589


Q ss_pred             eeehhhhccCChhHHHHHHHHHHhhccCCcEEEEee
Q 042119          205 CIFLAALVGMSKEEKLTILGHIRKYMKDGGILLVRS  240 (286)
Q Consensus       205 ~V~~aalvg~~~~~k~~vl~~l~~~l~pgg~lv~r~  240 (286)
                      +++-+.  +    .  .......+.++++|.++.-.
T Consensus       211 ~v~~~~--~----~--~~~~~~~~~l~~~g~~v~~g  238 (309)
T cd05289         211 AVLDTV--G----G--ETLARSLALVKPGGRLVSIA  238 (309)
T ss_pred             EEEECC--c----h--HHHHHHHHHHhcCcEEEEEc
Confidence            888542  2    1  15677888999999988653

Members identified as zinc-dependent alcohol dehydrogenases and quinone oxidoreductase. QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR actin the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts et

>PRK12826 3-ketoacyl-(acyl-carrier-protein) reductase; Reviewed

Probab=94.03  E-value=1.2  Score=39.02  Aligned_cols=75  Identities=13%  Similarity=0.178  Sum_probs=48.9

Q ss_pred             CCCEEEEecc-CCChhhHH-HHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEccccchhh---------
Q 042119          130 QPKKVAFVGS-GPMPLTSI-IMAKHHLTSTHFDNFDIDEAANDVARSIVASDAEFEGRMKFLTRDIMEVKE---------  198 (286)
Q Consensus       130 ~~~~VL~IG~-G~lp~tai-~lA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~g~l~~~i~f~~~D~~~~~~---------  198 (286)
                      .+++|+..|+ |.+|.... .|++   .|.+|++++.+++......+.+...+   .++.++.+|..+...         
T Consensus         5 ~~~~ilItGasg~iG~~l~~~l~~---~g~~V~~~~r~~~~~~~~~~~l~~~~---~~~~~~~~Dl~~~~~~~~~~~~~~   78 (251)
T PRK12826          5 EGRVALVTGAARGIGRAIAVRLAA---DGAEVIVVDICGDDAAATAELVEAAG---GKARARQVDVRDRAALKAAVAAGV   78 (251)
T ss_pred             CCCEEEEcCCCCcHHHHHHHHHHH---CCCEEEEEeCCHHHHHHHHHHHHhcC---CeEEEEECCCCCHHHHHHHHHHHH
Confidence            4678999995 43333222 2333   68999999999877666555555544   468999999876321         


Q ss_pred             -cCCCcceeehhh
Q 042119          199 -QLGEYDCIFLAA  210 (286)
Q Consensus       199 -~l~~fD~V~~aa  210 (286)
                       .++.+|+|+..+
T Consensus        79 ~~~~~~d~vi~~a   91 (251)
T PRK12826         79 EDFGRLDILVANA   91 (251)
T ss_pred             HHhCCCCEEEECC
Confidence             223688877554

>PRK06940 short chain dehydrogenase; Provisional

Probab=94.03  E-value=0.71  Score=41.92  Aligned_cols=101  Identities=18%  Similarity=0.175  Sum_probs=60.4

Q ss_pred             CEEEEeccCCChhhHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEccccchhh---------cCCC
Q 042119          132 KKVAFVGSGPMPLTSIIMAKHHLTSTHFDNFDIDEAANDVARSIVASDAEFEGRMKFLTRDIMEVKE---------QLGE  202 (286)
Q Consensus       132 ~~VL~IG~G~lp~tai~lA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~g~l~~~i~f~~~D~~~~~~---------~l~~  202 (286)
                      +.++.-|+|.+|.   .+|++...|++|+.+|.+++.++...+.+...|   .++.++..|+.+...         ..+.
T Consensus         3 k~~lItGa~gIG~---~la~~l~~G~~Vv~~~r~~~~~~~~~~~l~~~~---~~~~~~~~Dv~d~~~i~~~~~~~~~~g~   76 (275)
T PRK06940          3 EVVVVIGAGGIGQ---AIARRVGAGKKVLLADYNEENLEAAAKTLREAG---FDVSTQEVDVSSRESVKALAATAQTLGP   76 (275)
T ss_pred             CEEEEECCChHHH---HHHHHHhCCCEEEEEeCCHHHHHHHHHHHHhcC---CeEEEEEeecCCHHHHHHHHHHHHhcCC
Confidence            4566667653333   344444478999999999887665555444444   478888899876321         1246


Q ss_pred             cceeehhhhccCChhHH-----------HHHHHHHHhhccCCcEEEE
Q 042119          203 YDCIFLAALVGMSKEEK-----------LTILGHIRKYMKDGGILLV  238 (286)
Q Consensus       203 fD~V~~aalvg~~~~~k-----------~~vl~~l~~~l~pgg~lv~  238 (286)
                      .|+++..+.+....++.           ..+++.+.+.|+++|.++.
T Consensus        77 id~li~nAG~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~~~g~iv~  123 (275)
T PRK06940         77 VTGLVHTAGVSPSQASPEAILKVDLYGTALVLEEFGKVIAPGGAGVV  123 (275)
T ss_pred             CCEEEECCCcCCchhhHHHHHHHhhHHHHHHHHHHHHHHhhCCCEEE
Confidence            89888666442221221           2235666777776665444

>COG0078 ArgF Ornithine carbamoyltransferase [Amino acid transport and metabolism]

Probab=94.01  E-value=0.36  Score=45.33  Aligned_cols=86  Identities=20%  Similarity=0.344  Sum_probs=61.3

Q ss_pred             hcCCCCCCEEEEeccCCChhhHHHHHhhcCCCcEEE-----EEeCChHHHHHHHHHHHhcCCCCCCeEEEEccccchhhc
Q 042119          125 ENGVVQPKKVAFVGSGPMPLTSIIMAKHHLTSTHFD-----NFDIDEAANDVARSIVASDAEFEGRMKFLTRDIMEVKEQ  199 (286)
Q Consensus       125 ~~~~~~~~~VL~IG~G~lp~tai~lA~~~~~g~~V~-----~iDid~~ai~~Ar~~~~~~g~l~~~i~f~~~D~~~~~~~  199 (286)
                      .++.-.+.++++||-|.==..+++++. ...|..|+     +++.+++.+++|+++++..|   ..+++. -|.   ...
T Consensus       147 ~~g~l~g~k~a~vGDgNNv~nSl~~~~-a~~G~dv~ia~Pk~~~p~~~~~~~a~~~a~~~g---~~i~~t-~d~---~eA  218 (310)
T COG0078         147 HFGSLKGLKLAYVGDGNNVANSLLLAA-AKLGMDVRIATPKGYEPDPEVVEKAKENAKESG---GKITLT-EDP---EEA  218 (310)
T ss_pred             hcCcccCcEEEEEcCcchHHHHHHHHH-HHhCCeEEEECCCcCCcCHHHHHHHHHHHHhcC---CeEEEe-cCH---HHH
Confidence            445468899999999843333444444 35677765     67999999999999998877   466653 333   445


Q ss_pred             CCCcceeehhhhccCChhH
Q 042119          200 LGEYDCIFLAALVGMSKEE  218 (286)
Q Consensus       200 l~~fD~V~~aalvg~~~~~  218 (286)
                      ..+.|+|+.+..+.|-.+.
T Consensus       219 v~gADvvyTDvWvSMGee~  237 (310)
T COG0078         219 VKGADVVYTDVWVSMGEEA  237 (310)
T ss_pred             hCCCCEEEecCcccCcchh
Confidence            5789999999988775444

>PF01488 Shikimate_DH: Shikimate / quinate 5-dehydrogenase; InterPro: IPR006151 This entry represents a domain found in shikimate and quinate dehydrogenases, as well as glutamyl-tRNA reductases

Probab=94.00  E-value=0.094  Score=43.10  Aligned_cols=79  Identities=15%  Similarity=0.167  Sum_probs=50.8

Q ss_pred             CCCCCEEEEeccCCChhhHHHHHhhcCCCcE-EEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEccccchhhcCCCccee
Q 042119          128 VVQPKKVAFVGSGPMPLTSIIMAKHHLTSTH-FDNFDIDEAANDVARSIVASDAEFEGRMKFLTRDIMEVKEQLGEYDCI  206 (286)
Q Consensus       128 ~~~~~~VL~IG~G~lp~tai~lA~~~~~g~~-V~~iDid~~ai~~Ar~~~~~~g~l~~~i~f~~~D~~~~~~~l~~fD~V  206 (286)
                      .-.+++|+.||+|..+-..+.-..  ..|++ |+.+.++.+   .|+++++..+.  ..+++..-  .++...+..+|+|
T Consensus         9 ~l~~~~vlviGaGg~ar~v~~~L~--~~g~~~i~i~nRt~~---ra~~l~~~~~~--~~~~~~~~--~~~~~~~~~~Div   79 (135)
T PF01488_consen    9 DLKGKRVLVIGAGGAARAVAAALA--ALGAKEITIVNRTPE---RAEALAEEFGG--VNIEAIPL--EDLEEALQEADIV   79 (135)
T ss_dssp             TGTTSEEEEESSSHHHHHHHHHHH--HTTSSEEEEEESSHH---HHHHHHHHHTG--CSEEEEEG--GGHCHHHHTESEE
T ss_pred             CcCCCEEEEECCHHHHHHHHHHHH--HcCCCEEEEEECCHH---HHHHHHHHcCc--cccceeeH--HHHHHHHhhCCeE
Confidence            356899999999955544443333  24655 999999975   45566665542  45666543  3444445689999


Q ss_pred             ehhhhccCC
Q 042119          207 FLAALVGMS  215 (286)
Q Consensus       207 ~~aalvg~~  215 (286)
                      +.+.-++|+
T Consensus        80 I~aT~~~~~   88 (135)
T PF01488_consen   80 INATPSGMP   88 (135)
T ss_dssp             EE-SSTTST
T ss_pred             EEecCCCCc
Confidence            988777765

Shikimate 5-dehydrogenase (1.1.1.25 from EC) catalyses the conversion of shikimate to 5-dehydroshikimate [, ]. This reaction is part of the shikimate pathway which is involved in the biosynthesis of aromatic amino acids []. Quinate 5-dehydrogenase catalyses the conversion of quinate to 5-dehydroquinate. This reaction is part of the quinate pathway where quinic acid is exploited as a source of carbon in prokaryotes and microbial eukaryotes. Both the shikimate and quinate pathways share two common pathway metabolites, 3-dehydroquinate and dehydroshikimate. Glutamyl-tRNA reductase (1.2.1.70 from EC) catalyzes the first step of tetrapyrrole biosynthesis in plants, archaea and most bacteria. The dimeric enzyme has an unusual V-shaped architecture where each monomer consists of three domains linked by a long 'spinal' alpha-helix. The central catalytic domain specifically recognises the glutamate moiety of the substrate []. ; PDB: 2EV9_B 2CY0_B 1WXD_A 2D5C_A 1NVT_B 2EGG_A 3PWZ_A 3DOO_A 3DON_A 3FBT_C ....

>KOG2798 consensus Putative trehalase [Carbohydrate transport and metabolism]

Probab=93.96  E-value=1.2  Score=42.26  Aligned_cols=105  Identities=17%  Similarity=0.235  Sum_probs=64.2

Q ss_pred             CCCCEEEEeccCCChhhHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHH-------------------------------
Q 042119          129 VQPKKVAFVGSGPMPLTSIIMAKHHLTSTHFDNFDIDEAANDVARSIVA-------------------------------  177 (286)
Q Consensus       129 ~~~~~VL~IG~G~lp~tai~lA~~~~~g~~V~~iDid~~ai~~Ar~~~~-------------------------------  177 (286)
                      ..+-+||.=||| +|--+.-||.   .|..+-|=+.|--|+=.+.=.+.                               
T Consensus       149 r~ki~iLvPGaG-lGRLa~dla~---~G~~~qGNEfSy~Mli~S~FiLN~~~~~nq~~IYPfIh~~sn~~~~dDQlrpi~  224 (369)
T KOG2798|consen  149 RTKIRILVPGAG-LGRLAYDLAC---LGFKCQGNEFSYFMLICSSFILNYCKQENQFTIYPFIHQYSNSLSRDDQLRPIS  224 (369)
T ss_pred             ccCceEEecCCC-chhHHHHHHH---hcccccccHHHHHHHHHHHHHHHhhccCCcEEEEeeeecccccccccccccccc
Confidence            346799999999 5777788887   55555444555555443333321                               


Q ss_pred             --------hcCCCCCCeEEEEccccchhhcC---CCcceeehhhhccCChhHHHHHHHHHHhhccCCcEEEEe
Q 042119          178 --------SDAEFEGRMKFLTRDIMEVKEQL---GEYDCIFLAALVGMSKEEKLTILGHIRKYMKDGGILLVR  239 (286)
Q Consensus       178 --------~~g~l~~~i~f~~~D~~~~~~~l---~~fD~V~~aalvg~~~~~k~~vl~~l~~~l~pgg~lv~r  239 (286)
                              ..+ -.+.+..-.||-.++-..-   +.||+|..+-++- ++.+-.+.++.|.+.|+|||+.+=-
T Consensus       225 ~PD~~p~~~~~-~~~~fsicaGDF~evy~~s~~~~~~d~VvTcfFID-Ta~NileYi~tI~~iLk~GGvWiNl  295 (369)
T KOG2798|consen  225 IPDIHPASSNG-NTGSFSICAGDFLEVYGTSSGAGSYDVVVTCFFID-TAHNILEYIDTIYKILKPGGVWINL  295 (369)
T ss_pred             CccccccccCC-CCCCccccccceeEEecCcCCCCccceEEEEEEee-chHHHHHHHHHHHHhccCCcEEEec
Confidence                    111 0112222224444332222   3699998887762 3467788999999999999998754

>PLN02928 oxidoreductase family protein

Probab=93.95  E-value=0.092  Score=50.21  Aligned_cols=105  Identities=14%  Similarity=0.116  Sum_probs=60.0

Q ss_pred             CCCCEEEEeccCCChhhHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEccccchhhcCCCcceeeh
Q 042119          129 VQPKKVAFVGSGPMPLTSIIMAKHHLTSTHFDNFDIDEAANDVARSIVASDAEFEGRMKFLTRDIMEVKEQLGEYDCIFL  208 (286)
Q Consensus       129 ~~~~~VL~IG~G~lp~tai~lA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~g~l~~~i~f~~~D~~~~~~~l~~fD~V~~  208 (286)
                      -.+++|..||.|.+|......++  ..|.+|+++|.+...-....-.+.... . .......+...++..-+...|+|++
T Consensus       157 l~gktvGIiG~G~IG~~vA~~l~--afG~~V~~~dr~~~~~~~~~~~~~~~~-~-~~~~~~~~~~~~L~ell~~aDiVvl  232 (347)
T PLN02928        157 LFGKTVFILGYGAIGIELAKRLR--PFGVKLLATRRSWTSEPEDGLLIPNGD-V-DDLVDEKGGHEDIYEFAGEADIVVL  232 (347)
T ss_pred             CCCCEEEEECCCHHHHHHHHHHh--hCCCEEEEECCCCChhhhhhhcccccc-c-cccccccCcccCHHHHHhhCCEEEE
Confidence            45799999999999987666666  478999999987432111000000000 0 0000001122233444567899987


Q ss_pred             hhhccCChhHHHHHHHHHHhhccCCcEEEEe
Q 042119          209 AALVGMSKEEKLTILGHIRKYMKDGGILLVR  239 (286)
Q Consensus       209 aalvg~~~~~k~~vl~~l~~~l~pgg~lv~r  239 (286)
                      +.-.  +.+.+.-+=++....||||++||=-
T Consensus       233 ~lPl--t~~T~~li~~~~l~~Mk~ga~lINv  261 (347)
T PLN02928        233 CCTL--TKETAGIVNDEFLSSMKKGALLVNI  261 (347)
T ss_pred             CCCC--ChHhhcccCHHHHhcCCCCeEEEEC
Confidence            6432  3344433445778899999877653

>cd08243 quinone_oxidoreductase_like_1 Quinone oxidoreductase (QOR)

Probab=93.91  E-value=0.45  Score=43.05  Aligned_cols=97  Identities=13%  Similarity=0.189  Sum_probs=64.8

Q ss_pred             CCCCCEEEEecc-CCChhhHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEccccchhhcC-CCcce
Q 042119          128 VVQPKKVAFVGS-GPMPLTSIIMAKHHLTSTHFDNFDIDEAANDVARSIVASDAEFEGRMKFLTRDIMEVKEQL-GEYDC  205 (286)
Q Consensus       128 ~~~~~~VL~IG~-G~lp~tai~lA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~g~l~~~i~f~~~D~~~~~~~l-~~fD~  205 (286)
                      ..++.+||..|+ |++|..++.+|++  .|++|++++.+++..+.++    .+| . +.+-....+..+....+ .++|+
T Consensus       140 ~~~g~~vlV~ga~g~~g~~~~~~a~~--~g~~v~~~~~~~~~~~~~~----~~g-~-~~~~~~~~~~~~~i~~~~~~~d~  211 (320)
T cd08243         140 LQPGDTLLIRGGTSSVGLAALKLAKA--LGATVTATTRSPERAALLK----ELG-A-DEVVIDDGAIAEQLRAAPGGFDK  211 (320)
T ss_pred             CCCCCEEEEEcCCChHHHHHHHHHHH--cCCEEEEEeCCHHHHHHHH----hcC-C-cEEEecCccHHHHHHHhCCCceE
Confidence            467899999996 8999999999994  7899999999987755553    356 2 22211111111111112 36999


Q ss_pred             eehhhhccCChhHHHHHHHHHHhhccCCcEEEEee
Q 042119          206 IFLAALVGMSKEEKLTILGHIRKYMKDGGILLVRS  240 (286)
Q Consensus       206 V~~aalvg~~~~~k~~vl~~l~~~l~pgg~lv~r~  240 (286)
                      |+-+.  +    .  ..+....+.++++|+++.-.
T Consensus       212 vl~~~--~----~--~~~~~~~~~l~~~g~~v~~g  238 (320)
T cd08243         212 VLELV--G----T--ATLKDSLRHLRPGGIVCMTG  238 (320)
T ss_pred             EEECC--C----h--HHHHHHHHHhccCCEEEEEc
Confidence            88432  2    2  35777889999999988654

NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit.

>PRK06719 precorrin-2 dehydrogenase; Validated

Probab=93.90  E-value=0.41  Score=40.60  Aligned_cols=102  Identities=13%  Similarity=0.154  Sum_probs=55.0

Q ss_pred             CCCCEEEEeccCCChhhHH-HHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEccccchhhcCCCcceee
Q 042119          129 VQPKKVAFVGSGPMPLTSI-IMAKHHLTSTHFDNFDIDEAANDVARSIVASDAEFEGRMKFLTRDIMEVKEQLGEYDCIF  207 (286)
Q Consensus       129 ~~~~~VL~IG~G~lp~tai-~lA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~g~l~~~i~f~~~D~~~~~~~l~~fD~V~  207 (286)
                      -.+++|+.||+|..+..-+ .|.+   .|++|+.|+  |+..+   ++. .++    .+++......  ..++.++|+|+
T Consensus        11 l~~~~vlVvGGG~va~rka~~Ll~---~ga~V~VIs--p~~~~---~l~-~l~----~i~~~~~~~~--~~dl~~a~lVi   75 (157)
T PRK06719         11 LHNKVVVIIGGGKIAYRKASGLKD---TGAFVTVVS--PEICK---EMK-ELP----YITWKQKTFS--NDDIKDAHLIY   75 (157)
T ss_pred             cCCCEEEEECCCHHHHHHHHHHHh---CCCEEEEEc--CccCH---HHH-hcc----CcEEEecccC--hhcCCCceEEE
Confidence            3579999999998776533 2333   789999995  44322   221 122    3555544432  34567899988


Q ss_pred             hhhhccCChhHHHHHHHHHHhhccCCcEEEEeecCcceeeecccC
Q 042119          208 LAALVGMSKEEKLTILGHIRKYMKDGGILLVRSAKGARAFLYPVV  252 (286)
Q Consensus       208 ~aalvg~~~~~k~~vl~~l~~~l~pgg~lv~r~~~g~r~~lyp~v  252 (286)
                      .+.-   + ......+....+   .++.+-+.+......|..|.+
T Consensus        76 aaT~---d-~e~N~~i~~~a~---~~~~vn~~d~~~~~~f~~pa~  113 (157)
T PRK06719         76 AATN---Q-HAVNMMVKQAAH---DFQWVNVVSDGTESSFHTPGV  113 (157)
T ss_pred             ECCC---C-HHHHHHHHHHHH---HCCcEEECCCCCcCcEEeeeE
Confidence            6521   1 223334344443   344333333223345777743

>COG3288 PntA NAD/NADP transhydrogenase alpha subunit [Energy production and conversion]

Probab=93.87  E-value=0.06  Score=50.68  Aligned_cols=107  Identities=23%  Similarity=0.235  Sum_probs=72.5

Q ss_pred             CCCCCCEEEEeccCCChhhHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEcccc--ch--------
Q 042119          127 GVVQPKKVAFVGSGPMPLTSIIMAKHHLTSTHFDNFDIDEAANDVARSIVASDAEFEGRMKFLTRDIM--EV--------  196 (286)
Q Consensus       127 ~~~~~~~VL~IG~G~lp~tai~lA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~g~l~~~i~f~~~D~~--~~--------  196 (286)
                      +..+|.+++-+|-|-.|+.++..++  ..|+-|+..|.-+..-+.=+..-++...++   .-..++..  +.        
T Consensus       160 gtv~pA~vlv~G~Gvagl~aiata~--~lG~iVt~rdlrm~~Keqv~s~Ga~f~~~~---~ee~~gGYAk~ms~~~~~~q  234 (356)
T COG3288         160 GTVSPAKVLVIGAGVAGLAAIATAV--RLGAIVTARDLRMFKKEQVESLGAKFLAVE---DEESAGGYAKEMSEEFIAKQ  234 (356)
T ss_pred             ccccchhhhhhhHHHHHHHHHHHHh--hcceEEehhhhhhHHhhhhhhccccccccc---ccccCCCccccCCHHHHHHH
Confidence            3478899999999999999999888  589999999998776443332222221111   11112211  11        


Q ss_pred             ----hhcCCCcceeehhhhccCChhHHHHHHHHHHhhccCCcEEEEe
Q 042119          197 ----KEQLGEYDCIFLAALVGMSKEEKLTILGHIRKYMKDGGILLVR  239 (286)
Q Consensus       197 ----~~~l~~fD~V~~aalvg~~~~~k~~vl~~l~~~l~pgg~lv~r  239 (286)
                          .....++|+|+.-+++...+.+| -+-+++..-||||.+++--
T Consensus       235 ~~~~a~~~~~~DivITTAlIPGrpAP~-Lvt~~mv~sMkpGSViVDl  280 (356)
T COG3288         235 AELVAEQAKEVDIVITTALIPGRPAPK-LVTAEMVASMKPGSVIVDL  280 (356)
T ss_pred             HHHHHHHhcCCCEEEEecccCCCCCch-hhHHHHHHhcCCCcEEEEe
Confidence                12345899999999995444566 4889999999999988753

>cd01065 NAD_bind_Shikimate_DH NAD(P) binding domain of Shikimate dehydrogenase

Probab=93.87  E-value=0.38  Score=39.52  Aligned_cols=101  Identities=20%  Similarity=0.207  Sum_probs=53.7

Q ss_pred             CCCCEEEEeccCCChhhHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEccccchhhcCCCcceeeh
Q 042119          129 VQPKKVAFVGSGPMPLTSIIMAKHHLTSTHFDNFDIDEAANDVARSIVASDAEFEGRMKFLTRDIMEVKEQLGEYDCIFL  208 (286)
Q Consensus       129 ~~~~~VL~IG~G~lp~tai~lA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~g~l~~~i~f~~~D~~~~~~~l~~fD~V~~  208 (286)
                      ..+++|+++|+|.+|.+....... ..+..|+.+|.+++..+...+.   .+.  ..+.....|.   .....++|+|+.
T Consensus        17 ~~~~~i~iiG~G~~g~~~a~~l~~-~g~~~v~v~~r~~~~~~~~~~~---~~~--~~~~~~~~~~---~~~~~~~Dvvi~   87 (155)
T cd01065          17 LKGKKVLILGAGGAARAVAYALAE-LGAAKIVIVNRTLEKAKALAER---FGE--LGIAIAYLDL---EELLAEADLIIN   87 (155)
T ss_pred             CCCCEEEEECCcHHHHHHHHHHHH-CCCCEEEEEcCCHHHHHHHHHH---Hhh--cccceeecch---hhccccCCEEEe
Confidence            457899999999766654433321 1247899999998876543333   231  0012222333   222467999997


Q ss_pred             hhhccCChhHHHHHHHHHHhhccCCcEEEEeec
Q 042119          209 AALVGMSKEEKLTILGHIRKYMKDGGILLVRSA  241 (286)
Q Consensus       209 aalvg~~~~~k~~vl~~l~~~l~pgg~lv~r~~  241 (286)
                      +.-.+....+...+ .  ...+++|..++--+.
T Consensus        88 ~~~~~~~~~~~~~~-~--~~~~~~~~~v~D~~~  117 (155)
T cd01065          88 TTPVGMKPGDELPL-P--PSLLKPGGVVYDVVY  117 (155)
T ss_pred             CcCCCCCCCCCCCC-C--HHHcCCCCEEEEcCc
Confidence            75433210000001 0  123577776665543

Shikimate dehydrogenase (DH) is an amino acid DH family member. Shikimate pathway links metabolism of carbohydrates to de novo biosynthesis of aromatic amino acids, quinones and folate. It is essential in plants, bacteria, and fungi but absent in mammals, thus making enzymes involved in this pathway ideal targets for broad spectrum antibiotics and herbicides. Shikimate DH catalyzes the reduction of 3-hydroshikimate to shikimate using the cofactor NADH. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann

>COG2084 MmsB 3-hydroxyisobutyrate dehydrogenase and related beta-hydroxyacid dehydrogenases [Lipid metabolism]

Probab=93.85  E-value=0.2  Score=46.82  Aligned_cols=91  Identities=19%  Similarity=0.240  Sum_probs=59.7

Q ss_pred             CEEEEeccCCChhhHHHHHhh-cCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEccccchhhcCCCcceeehhh
Q 042119          132 KKVAFVGSGPMPLTSIIMAKH-HLTSTHFDNFDIDEAANDVARSIVASDAEFEGRMKFLTRDIMEVKEQLGEYDCIFLAA  210 (286)
Q Consensus       132 ~~VL~IG~G~lp~tai~lA~~-~~~g~~V~~iDid~~ai~~Ar~~~~~~g~l~~~i~f~~~D~~~~~~~l~~fD~V~~aa  210 (286)
                      .+|.|||-|.+|..   ||++ ...|..|+.+|.+++..   .+.+...|.     +.. .+   ......+.|+||.+-
T Consensus         1 ~kIafIGLG~MG~p---mA~~L~~aG~~v~v~~r~~~ka---~~~~~~~Ga-----~~a-~s---~~eaa~~aDvVitmv   65 (286)
T COG2084           1 MKIAFIGLGIMGSP---MAANLLKAGHEVTVYNRTPEKA---AELLAAAGA-----TVA-AS---PAEAAAEADVVITML   65 (286)
T ss_pred             CeEEEEcCchhhHH---HHHHHHHCCCEEEEEeCChhhh---hHHHHHcCC-----ccc-CC---HHHHHHhCCEEEEec
Confidence            48999999998865   4443 23689999999999883   233344562     111 11   112224789998653


Q ss_pred             hccCChhHHHHHH---HHHHhhccCCcEEEEee
Q 042119          211 LVGMSKEEKLTIL---GHIRKYMKDGGILLVRS  240 (286)
Q Consensus       211 lvg~~~~~k~~vl---~~l~~~l~pgg~lv~r~  240 (286)
                      .   +.+.-..++   ..+...++||.++|-.+
T Consensus        66 ~---~~~~V~~V~~g~~g~~~~~~~G~i~IDmS   95 (286)
T COG2084          66 P---DDAAVRAVLFGENGLLEGLKPGAIVIDMS   95 (286)
T ss_pred             C---CHHHHHHHHhCccchhhcCCCCCEEEECC
Confidence            2   235555666   56888999999999865

>PRK07679 pyrroline-5-carboxylate reductase; Reviewed

Probab=93.84  E-value=0.41  Score=43.94  Aligned_cols=93  Identities=14%  Similarity=0.255  Sum_probs=54.2

Q ss_pred             CCEEEEeccCCChhhHHH-HHhh-cCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEccccchhhcCCCcceeeh
Q 042119          131 PKKVAFVGSGPMPLTSII-MAKH-HLTSTHFDNFDIDEAANDVARSIVASDAEFEGRMKFLTRDIMEVKEQLGEYDCIFL  208 (286)
Q Consensus       131 ~~~VL~IG~G~lp~tai~-lA~~-~~~g~~V~~iDid~~ai~~Ar~~~~~~g~l~~~i~f~~~D~~~~~~~l~~fD~V~~  208 (286)
                      .++|.+||+|.+|.+-.. |.+. .....+|+.+|++++.  .++++....|     ++. ..|..+.   ....|+||+
T Consensus         3 ~mkI~~IG~G~mG~aia~~l~~~g~~~~~~v~v~~r~~~~--~~~~l~~~~g-----~~~-~~~~~e~---~~~aDvVil   71 (279)
T PRK07679          3 IQNISFLGAGSIAEAIIGGLLHANVVKGEQITVSNRSNET--RLQELHQKYG-----VKG-THNKKEL---LTDANILFL   71 (279)
T ss_pred             CCEEEEECccHHHHHHHHHHHHCCCCCcceEEEECCCCHH--HHHHHHHhcC-----ceE-eCCHHHH---HhcCCEEEE
Confidence            368999999998854332 2220 0123689999987632  2233333345     222 2333222   246799998


Q ss_pred             hhhccCChhHHHHHHHHHHhhccCCcEEEE
Q 042119          209 AALVGMSKEEKLTILGHIRKYMKDGGILLV  238 (286)
Q Consensus       209 aalvg~~~~~k~~vl~~l~~~l~pgg~lv~  238 (286)
                      +.-    ...-.++++.+...+++|.+++-
T Consensus        72 av~----p~~~~~vl~~l~~~~~~~~liIs   97 (279)
T PRK07679         72 AMK----PKDVAEALIPFKEYIHNNQLIIS   97 (279)
T ss_pred             EeC----HHHHHHHHHHHHhhcCCCCEEEE
Confidence            743    24455678888888877765554

>cd08297 CAD3 Cinnamyl alcohol dehydrogenases (CAD)

Probab=93.83  E-value=0.41  Score=44.37  Aligned_cols=100  Identities=20%  Similarity=0.290  Sum_probs=66.1

Q ss_pred             CCCCCCEEEEeccCC-ChhhHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEccccc-hhh--cCCC
Q 042119          127 GVVQPKKVAFVGSGP-MPLTSIIMAKHHLTSTHFDNFDIDEAANDVARSIVASDAEFEGRMKFLTRDIME-VKE--QLGE  202 (286)
Q Consensus       127 ~~~~~~~VL~IG~G~-lp~tai~lA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~g~l~~~i~f~~~D~~~-~~~--~l~~  202 (286)
                      ...++.+||..|+|+ +|..++.+|++  .|.+|+.++.+++..+.++    .+| ...-+.....|..+ +..  ...+
T Consensus       162 ~~~~~~~vlV~g~~~~vg~~~~~~a~~--~g~~v~~~~~~~~~~~~~~----~~g-~~~v~~~~~~~~~~~~~~~~~~~~  234 (341)
T cd08297         162 GLKPGDWVVISGAGGGLGHLGVQYAKA--MGLRVIAIDVGDEKLELAK----ELG-ADAFVDFKKSDDVEAVKELTGGGG  234 (341)
T ss_pred             CCCCCCEEEEECCCchHHHHHHHHHHH--CCCeEEEEeCCHHHHHHHH----HcC-CcEEEcCCCccHHHHHHHHhcCCC
Confidence            567889999999876 88999999995  7899999999987766553    355 21111221112111 111  1246


Q ss_pred             cceeehhhhccCChhHHHHHHHHHHhhccCCcEEEEee
Q 042119          203 YDCIFLAALVGMSKEEKLTILGHIRKYMKDGGILLVRS  240 (286)
Q Consensus       203 fD~V~~aalvg~~~~~k~~vl~~l~~~l~pgg~lv~r~  240 (286)
                      +|+|+.+..-       ...+....+.|+++|+++.-.
T Consensus       235 vd~vl~~~~~-------~~~~~~~~~~l~~~g~~v~~g  265 (341)
T cd08297         235 AHAVVVTAVS-------AAAYEQALDYLRPGGTLVCVG  265 (341)
T ss_pred             CCEEEEcCCc-------hHHHHHHHHHhhcCCEEEEec
Confidence            9999854321       135677888999999998764

These alcohol dehydrogenases are related to the cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Cinnamyl alcohol dehydrogenases (CAD) reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short cha

>PRK05479 ketol-acid reductoisomerase; Provisional

Probab=93.82  E-value=0.27  Score=46.80  Aligned_cols=91  Identities=18%  Similarity=0.183  Sum_probs=57.3

Q ss_pred             CCCEEEEeccCCChhhHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEccccchhhcCCCcceeehh
Q 042119          130 QPKKVAFVGSGPMPLTSIIMAKHHLTSTHFDNFDIDEAANDVARSIVASDAEFEGRMKFLTRDIMEVKEQLGEYDCIFLA  209 (286)
Q Consensus       130 ~~~~VL~IG~G~lp~tai~lA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~g~l~~~i~f~~~D~~~~~~~l~~fD~V~~a  209 (286)
                      .+++|.+||.|.+|.+...-.+  ..|.+|+..+.++...   .+.+...| .    +  ..|..+   .....|+|+++
T Consensus        16 ~gktIgIIG~GsmG~AlA~~L~--~sG~~Vvv~~r~~~~s---~~~A~~~G-~----~--~~s~~e---aa~~ADVVvLa   80 (330)
T PRK05479         16 KGKKVAIIGYGSQGHAHALNLR--DSGVDVVVGLREGSKS---WKKAEADG-F----E--VLTVAE---AAKWADVIMIL   80 (330)
T ss_pred             CCCEEEEEeeHHHHHHHHHHHH--HCCCEEEEEECCchhh---HHHHHHCC-C----e--eCCHHH---HHhcCCEEEEc
Confidence            4689999999998876544333  2677888877764432   22233456 2    1  224333   33568999976


Q ss_pred             hhccCChhHHHHHH-HHHHhhccCCcEEEEe
Q 042119          210 ALVGMSKEEKLTIL-GHIRKYMKDGGILLVR  239 (286)
Q Consensus       210 alvg~~~~~k~~vl-~~l~~~l~pgg~lv~r  239 (286)
                      .-    ...-..++ +++.+.|+||.+|++-
T Consensus        81 VP----d~~~~~V~~~~I~~~Lk~g~iL~~a  107 (330)
T PRK05479         81 LP----DEVQAEVYEEEIEPNLKEGAALAFA  107 (330)
T ss_pred             CC----HHHHHHHHHHHHHhcCCCCCEEEEC
Confidence            42    12335677 7899999999888444

>cd08292 ETR_like_2 2-enoyl thioester reductase (ETR) like proteins, child 2

Probab=93.81  E-value=0.28  Score=44.84  Aligned_cols=100  Identities=14%  Similarity=0.123  Sum_probs=62.6

Q ss_pred             cCCCCCCEEEEecc-CCChhhHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEccccc-hhh--cCC
Q 042119          126 NGVVQPKKVAFVGS-GPMPLTSIIMAKHHLTSTHFDNFDIDEAANDVARSIVASDAEFEGRMKFLTRDIME-VKE--QLG  201 (286)
Q Consensus       126 ~~~~~~~~VL~IG~-G~lp~tai~lA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~g~l~~~i~f~~~D~~~-~~~--~l~  201 (286)
                      ..+.++.+||..|+ |.+|..++.+|++  .|++++.+.-+++..+..++    .| ...-+....-+..+ +..  .-.
T Consensus       135 ~~~~~g~~vlI~g~~g~ig~~~~~~a~~--~G~~v~~~~~~~~~~~~~~~----~g-~~~~~~~~~~~~~~~i~~~~~~~  207 (324)
T cd08292         135 LGVKPGQWLIQNAAGGAVGKLVAMLAAA--RGINVINLVRRDAGVAELRA----LG-IGPVVSTEQPGWQDKVREAAGGA  207 (324)
T ss_pred             hCCCCCCEEEEcccccHHHHHHHHHHHH--CCCeEEEEecCHHHHHHHHh----cC-CCEEEcCCCchHHHHHHHHhCCC
Confidence            34578899999875 8899999999994  78999888777776544443    46 21111111111111 111  113


Q ss_pred             CcceeehhhhccCChhHHHHHHHHHHhhccCCcEEEEee
Q 042119          202 EYDCIFLAALVGMSKEEKLTILGHIRKYMKDGGILLVRS  240 (286)
Q Consensus       202 ~fD~V~~aalvg~~~~~k~~vl~~l~~~l~pgg~lv~r~  240 (286)
                      ++|+|+-+.  |    .  ..+....+.++++|+++.-.
T Consensus       208 ~~d~v~d~~--g----~--~~~~~~~~~l~~~g~~v~~g  238 (324)
T cd08292         208 PISVALDSV--G----G--KLAGELLSLLGEGGTLVSFG  238 (324)
T ss_pred             CCcEEEECC--C----C--hhHHHHHHhhcCCcEEEEEe
Confidence            699998542  2    1  24567788999999988754

2-enoyl thioester reductase (ETR) like proteins. ETR catalyzes the NADPH-dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the 2-enoyl thioester reductase (ETR) like proteins. ETR catalyzes the NADPH-dependent dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordina

>cd08263 Zn_ADH10 Alcohol dehydrogenases of the MDR family

Probab=93.79  E-value=0.22  Score=47.08  Aligned_cols=98  Identities=18%  Similarity=0.223  Sum_probs=64.8

Q ss_pred             CCCCEEEEeccCCChhhHHHHHhhcCCCcE-EEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEcccc-chhh--cCCCcc
Q 042119          129 VQPKKVAFVGSGPMPLTSIIMAKHHLTSTH-FDNFDIDEAANDVARSIVASDAEFEGRMKFLTRDIM-EVKE--QLGEYD  204 (286)
Q Consensus       129 ~~~~~VL~IG~G~lp~tai~lA~~~~~g~~-V~~iDid~~ai~~Ar~~~~~~g~l~~~i~f~~~D~~-~~~~--~l~~fD  204 (286)
                      .++.+||..|+|++|..++.+|+.  .|++ |++++.+++..+.+++    .| ...-+.....+.. ++..  .-..||
T Consensus       186 ~~g~~VlI~g~g~vG~~~~~lak~--~G~~~vi~~~~s~~~~~~~~~----~g-~~~v~~~~~~~~~~~l~~~~~~~~~d  258 (367)
T cd08263         186 RPGETVAVIGVGGVGSSAIQLAKA--FGASPIIAVDVRDEKLAKAKE----LG-ATHTVNAAKEDAVAAIREITGGRGVD  258 (367)
T ss_pred             CCCCEEEEECCcHHHHHHHHHHHH--cCCCeEEEEeCCHHHHHHHHH----hC-CceEecCCcccHHHHHHHHhCCCCCC
Confidence            678899999999999999999994  6777 9999999888776654    45 2111111111111 1111  123599


Q ss_pred             eeehhhhccCChhHHHHHHHHHHhhccCCcEEEEee
Q 042119          205 CIFLAALVGMSKEEKLTILGHIRKYMKDGGILLVRS  240 (286)
Q Consensus       205 ~V~~aalvg~~~~~k~~vl~~l~~~l~pgg~lv~r~  240 (286)
                      +|+-+  ++    .. ..+....+.|+++|.++.-.
T Consensus       259 ~vld~--vg----~~-~~~~~~~~~l~~~G~~v~~g  287 (367)
T cd08263         259 VVVEA--LG----KP-ETFKLALDVVRDGGRAVVVG  287 (367)
T ss_pred             EEEEe--CC----CH-HHHHHHHHHHhcCCEEEEEc
Confidence            99844  22    11 36677889999999988653

NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subu

>cd08290 ETR 2-enoyl thioester reductase (ETR)

Probab=93.78  E-value=0.19  Score=46.50  Aligned_cols=102  Identities=13%  Similarity=0.068  Sum_probs=60.1

Q ss_pred             CCCCCEEEEecc-CCChhhHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEc---cccchhhcC-C-
Q 042119          128 VVQPKKVAFVGS-GPMPLTSIIMAKHHLTSTHFDNFDIDEAANDVARSIVASDAEFEGRMKFLTR---DIMEVKEQL-G-  201 (286)
Q Consensus       128 ~~~~~~VL~IG~-G~lp~tai~lA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~g~l~~~i~f~~~---D~~~~~~~l-~-  201 (286)
                      ..++++||..|+ |++|..++.+|++  .|++++.+..+++..+..++.+.++| ...-+.....   +..+....+ . 
T Consensus       144 ~~~g~~vlI~g~~g~vg~~~~~~a~~--~g~~v~~~~~~~~~~~~~~~~~~~~g-~~~~~~~~~~~~~~~~~~i~~~~~~  220 (341)
T cd08290         144 LQPGDWVIQNGANSAVGQAVIQLAKL--LGIKTINVVRDRPDLEELKERLKALG-ADHVLTEEELRSLLATELLKSAPGG  220 (341)
T ss_pred             cCCCCEEEEccchhHHHHHHHHHHHH--cCCeEEEEEcCCCcchhHHHHHHhcC-CCEEEeCcccccccHHHHHHHHcCC
Confidence            467899999986 8899999999995  68888777666532222333334466 2211111111   111111111 1 


Q ss_pred             CcceeehhhhccCChhHHHHHHHHHHhhccCCcEEEEee
Q 042119          202 EYDCIFLAALVGMSKEEKLTILGHIRKYMKDGGILLVRS  240 (286)
Q Consensus       202 ~fD~V~~aalvg~~~~~k~~vl~~l~~~l~pgg~lv~r~  240 (286)
                      .+|+|+-+.  |    ..  .+....+.++++|.++.-.
T Consensus       221 ~~d~vld~~--g----~~--~~~~~~~~l~~~G~~v~~g  251 (341)
T cd08290         221 RPKLALNCV--G----GK--SATELARLLSPGGTMVTYG  251 (341)
T ss_pred             CceEEEECc--C----cH--hHHHHHHHhCCCCEEEEEe
Confidence            589988542  2    11  3445778899999988754

2-enoyl thioester reductase (ETR) catalyzes the NADPH-dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the alcohol dehydrogenases in this family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann f

>cd08276 MDR7 Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family

Probab=93.77  E-value=0.26  Score=45.02  Aligned_cols=99  Identities=16%  Similarity=0.159  Sum_probs=66.1

Q ss_pred             CCCCCCEEEEeccCCChhhHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEE-ccccch-hh--cCCC
Q 042119          127 GVVQPKKVAFVGSGPMPLTSIIMAKHHLTSTHFDNFDIDEAANDVARSIVASDAEFEGRMKFLT-RDIMEV-KE--QLGE  202 (286)
Q Consensus       127 ~~~~~~~VL~IG~G~lp~tai~lA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~g~l~~~i~f~~-~D~~~~-~~--~l~~  202 (286)
                      ...++.+|+..|+|++|..++.+|++  .|++|+.++.+++..+.+++    .| ...-+.... .+..+. ..  .-..
T Consensus       157 ~~~~g~~vli~g~g~~g~~~~~~a~~--~G~~v~~~~~~~~~~~~~~~----~g-~~~~~~~~~~~~~~~~~~~~~~~~~  229 (336)
T cd08276         157 PLKPGDTVLVQGTGGVSLFALQFAKA--AGARVIATSSSDEKLERAKA----LG-ADHVINYRTTPDWGEEVLKLTGGRG  229 (336)
T ss_pred             CCCCCCEEEEECCcHHHHHHHHHHHH--cCCEEEEEeCCHHHHHHHHH----cC-CCEEEcCCcccCHHHHHHHHcCCCC
Confidence            35778899999999999999999994  78999999999988877765    35 211111111 111111 11  1136


Q ss_pred             cceeehhhhccCChhHHHHHHHHHHhhccCCcEEEEee
Q 042119          203 YDCIFLAALVGMSKEEKLTILGHIRKYMKDGGILLVRS  240 (286)
Q Consensus       203 fD~V~~aalvg~~~~~k~~vl~~l~~~l~pgg~lv~r~  240 (286)
                      +|+++-+.  +    .  ..+....+.++++|.++.-.
T Consensus       230 ~d~~i~~~--~----~--~~~~~~~~~l~~~G~~v~~g  259 (336)
T cd08276         230 VDHVVEVG--G----P--GTLAQSIKAVAPGGVISLIG  259 (336)
T ss_pred             CcEEEECC--C----h--HHHHHHHHhhcCCCEEEEEc
Confidence            99988542  2    1  35667889999999988654

This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcoh

>PRK12475 thiamine/molybdopterin biosynthesis MoeB-like protein; Provisional

Probab=93.76  E-value=0.55  Score=44.80  Aligned_cols=101  Identities=15%  Similarity=0.147  Sum_probs=58.8

Q ss_pred             CCCEEEEeccCCChhhHH-HHHhhcCCCc-EEEEEeCCh---------------------HHHHHHHHHHHhcCCCCCCe
Q 042119          130 QPKKVAFVGSGPMPLTSI-IMAKHHLTST-HFDNFDIDE---------------------AANDVARSIVASDAEFEGRM  186 (286)
Q Consensus       130 ~~~~VL~IG~G~lp~tai-~lA~~~~~g~-~V~~iDid~---------------------~ai~~Ar~~~~~~g~l~~~i  186 (286)
                      ..++|+.||||.+|-... .||+   .|. +++-+|.|.                     .-++.|++.+++.. -.-+|
T Consensus        23 ~~~~VlIiG~GglGs~va~~La~---aGvg~i~lvD~D~ve~sNL~RQ~l~~~~d~~~g~~Ka~aa~~~l~~in-p~v~i   98 (338)
T PRK12475         23 REKHVLIVGAGALGAANAEALVR---AGIGKLTIADRDYVEWSNLQRQQLYTEEDAKQKKPKAIAAKEHLRKIN-SEVEI   98 (338)
T ss_pred             cCCcEEEECCCHHHHHHHHHHHH---cCCCEEEEEcCCcccccccCccccccHHHccCCccHHHHHHHHHHHHC-CCcEE
Confidence            468999999997765433 3444   564 899999984                     12344555566655 23456


Q ss_pred             EEEEccccc--hhhcCCCcceeehhhhccCChhHHHHHHHHHHhhccCCcEEEEee
Q 042119          187 KFLTRDIME--VKEQLGEYDCIFLAALVGMSKEEKLTILGHIRKYMKDGGILLVRS  240 (286)
Q Consensus       187 ~f~~~D~~~--~~~~l~~fD~V~~aalvg~~~~~k~~vl~~l~~~l~pgg~lv~r~  240 (286)
                      +.+..|+..  +...+++||+|+.+.-   +.+.+ .++..+...  .|-.++.-.
T Consensus        99 ~~~~~~~~~~~~~~~~~~~DlVid~~D---~~~~r-~~in~~~~~--~~ip~i~~~  148 (338)
T PRK12475         99 VPVVTDVTVEELEELVKEVDLIIDATD---NFDTR-LLINDLSQK--YNIPWIYGG  148 (338)
T ss_pred             EEEeccCCHHHHHHHhcCCCEEEEcCC---CHHHH-HHHHHHHHH--cCCCEEEEE
Confidence            666666542  2223467999986642   22343 345555443  233444443

>PF02558 ApbA: Ketopantoate reductase PanE/ApbA; InterPro: IPR013332 ApbA, the ketopantoate reductase enzyme 1

Probab=93.75  E-value=0.091  Score=43.26  Aligned_cols=95  Identities=8%  Similarity=0.130  Sum_probs=54.0

Q ss_pred             EEEeccCCChhhHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCC-C-CCC--eEEEEcccc-chhhcCCCcceeeh
Q 042119          134 VAFVGSGPMPLTSIIMAKHHLTSTHFDNFDIDEAANDVARSIVASDAE-F-EGR--MKFLTRDIM-EVKEQLGEYDCIFL  208 (286)
Q Consensus       134 VL~IG~G~lp~tai~lA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~g~-l-~~~--i~f~~~D~~-~~~~~l~~fD~V~~  208 (286)
                      |+.+|+|.+|..-...-+  ..|.+|+.++..+ ..+.    +++.|. + ...  ..+...... ......+.||+||+
T Consensus         1 I~I~G~GaiG~~~a~~L~--~~g~~V~l~~r~~-~~~~----~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~viv   73 (151)
T PF02558_consen    1 ILIIGAGAIGSLYAARLA--QAGHDVTLVSRSP-RLEA----IKEQGLTITGPDGDETVQPPIVISAPSADAGPYDLVIV   73 (151)
T ss_dssp             EEEESTSHHHHHHHHHHH--HTTCEEEEEESHH-HHHH----HHHHCEEEEETTEEEEEEEEEEESSHGHHHSTESEEEE
T ss_pred             CEEECcCHHHHHHHHHHH--HCCCceEEEEccc-cHHh----hhheeEEEEecccceecccccccCcchhccCCCcEEEE
Confidence            688999977654333222  2799999999998 4443    333341 0 001  111111111 11123357999998


Q ss_pred             hhhccCChhHHHHHHHHHHhhccCCcEEEEe
Q 042119          209 AALVGMSKEEKLTILGHIRKYMKDGGILLVR  239 (286)
Q Consensus       209 aalvg~~~~~k~~vl~~l~~~l~pgg~lv~r  239 (286)
                      +. ..   .+-..+++.+.+.+.|++.+++-
T Consensus        74 ~v-Ka---~~~~~~l~~l~~~~~~~t~iv~~  100 (151)
T PF02558_consen   74 AV-KA---YQLEQALQSLKPYLDPNTTIVSL  100 (151)
T ss_dssp             -S-SG---GGHHHHHHHHCTGEETTEEEEEE
T ss_pred             Ee-cc---cchHHHHHHHhhccCCCcEEEEE
Confidence            73 22   34456999999999999655543

1.1.169 from EC of Salmonella typhimurium is required for the synthesis of thiamine via the alternative pyrimidine biosynthetic pathway []. Precursors to the pyrimidine moiety of thiamine are synthesized de novo by the purine biosynthetic pathway or the alternative pyrimidine biosynthetic (APB) pathway. The ApbA protein catalyzes the NADPH-specific reduction of ketopantoic acid to pantoic acid. This activity had previously been associated with the pantothenate biosynthetic gene panE []. ApbA and PanE are allelic [].; GO: 0008677 2-dehydropantoate 2-reductase activity, 0055114 oxidation-reduction process; PDB: 3EGO_B 3HWR_B 2QYT_A 1YJQ_A 1KS9_A 2OFP_A 1YON_A 3G17_E 3GHY_B 3I83_B ....

>PRK08818 prephenate dehydrogenase; Provisional

Probab=93.73  E-value=0.2  Score=48.48  Aligned_cols=79  Identities=14%  Similarity=0.143  Sum_probs=52.8

Q ss_pred             CCEEEEecc-CCChhhHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEccccchhhcCCCcceeehh
Q 042119          131 PKKVAFVGS-GPMPLTSIIMAKHHLTSTHFDNFDIDEAANDVARSIVASDAEFEGRMKFLTRDIMEVKEQLGEYDCIFLA  209 (286)
Q Consensus       131 ~~~VL~IG~-G~lp~tai~lA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~g~l~~~i~f~~~D~~~~~~~l~~fD~V~~a  209 (286)
                      ..+|..||. |-+|-+-...-++ ..+.+|+|+|.+.            .+            ..+......+.|+|+++
T Consensus         4 ~~~I~IIGl~GliGgslA~alk~-~~~~~V~g~D~~d------------~~------------~~~~~~~v~~aDlVila   58 (370)
T PRK08818          4 QPVVGIVGSAGAYGRWLARFLRT-RMQLEVIGHDPAD------------PG------------SLDPATLLQRADVLIFS   58 (370)
T ss_pred             CCEEEEECCCCHHHHHHHHHHHh-cCCCEEEEEcCCc------------cc------------cCCHHHHhcCCCEEEEe
Confidence            469999999 9888654333332 2488999999840            11            01112234578999998


Q ss_pred             hhccCChhHHHHHHHHHHhh---ccCCcEEEE
Q 042119          210 ALVGMSKEEKLTILGHIRKY---MKDGGILLV  238 (286)
Q Consensus       210 alvg~~~~~k~~vl~~l~~~---l~pgg~lv~  238 (286)
                      .-+    ..-.++++++.+.   ++||.+|.=
T Consensus        59 vPv----~~~~~~l~~l~~~~~~l~~~~iVtD   86 (370)
T PRK08818         59 API----RHTAALIEEYVALAGGRAAGQLWLD   86 (370)
T ss_pred             CCH----HHHHHHHHHHhhhhcCCCCCeEEEE
Confidence            755    5666788888876   788777654

>PRK05396 tdh L-threonine 3-dehydrogenase; Validated

Probab=93.71  E-value=0.21  Score=46.45  Aligned_cols=98  Identities=18%  Similarity=0.274  Sum_probs=65.0

Q ss_pred             CCCCEEEEeccCCChhhHHHHHhhcCCCc-EEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEccccchhh---cCCCcc
Q 042119          129 VQPKKVAFVGSGPMPLTSIIMAKHHLTST-HFDNFDIDEAANDVARSIVASDAEFEGRMKFLTRDIMEVKE---QLGEYD  204 (286)
Q Consensus       129 ~~~~~VL~IG~G~lp~tai~lA~~~~~g~-~V~~iDid~~ai~~Ar~~~~~~g~l~~~i~f~~~D~~~~~~---~l~~fD  204 (286)
                      .++++|+..|+|++|..++.+|++  .|+ +|++++.+++..+.+++    +| ...-+.....+..+...   .-.++|
T Consensus       162 ~~g~~vlV~~~g~vg~~~~~la~~--~G~~~v~~~~~~~~~~~~~~~----lg-~~~~~~~~~~~~~~~~~~~~~~~~~d  234 (341)
T PRK05396        162 LVGEDVLITGAGPIGIMAAAVAKH--VGARHVVITDVNEYRLELARK----MG-ATRAVNVAKEDLRDVMAELGMTEGFD  234 (341)
T ss_pred             CCCCeEEEECCCHHHHHHHHHHHH--cCCCEEEEEcCCHHHHHHHHH----hC-CcEEecCccccHHHHHHHhcCCCCCC
Confidence            578999999999999999999994  677 68888888887766554    45 21111111112211111   113689


Q ss_pred             eeehhhhccCChhHHHHHHHHHHhhccCCcEEEEee
Q 042119          205 CIFLAALVGMSKEEKLTILGHIRKYMKDGGILLVRS  240 (286)
Q Consensus       205 ~V~~aalvg~~~~~k~~vl~~l~~~l~pgg~lv~r~  240 (286)
                      +||-+..     .  ...+..+.+.++++|.++.-.
T Consensus       235 ~v~d~~g-----~--~~~~~~~~~~l~~~G~~v~~g  263 (341)
T PRK05396        235 VGLEMSG-----A--PSAFRQMLDNMNHGGRIAMLG  263 (341)
T ss_pred             EEEECCC-----C--HHHHHHHHHHHhcCCEEEEEe
Confidence            9886432     1  236777888999999988865

>PLN02602 lactate dehydrogenase

Probab=93.69  E-value=0.73  Score=44.22  Aligned_cols=104  Identities=20%  Similarity=0.225  Sum_probs=64.6

Q ss_pred             CEEEEeccCCChhhHHHHHhhcCCCcEEEEEeCChH-HHHHHHHHHHhcCCCCCCeEEEE-ccccchhhcCCCcceeehh
Q 042119          132 KKVAFVGSGPMPLTSIIMAKHHLTSTHFDNFDIDEA-ANDVARSIVASDAEFEGRMKFLT-RDIMEVKEQLGEYDCIFLA  209 (286)
Q Consensus       132 ~~VL~IG~G~lp~tai~lA~~~~~g~~V~~iDid~~-ai~~Ar~~~~~~g~l~~~i~f~~-~D~~~~~~~l~~fD~V~~a  209 (286)
                      .+|..||+|..|.+..+.........++.-+|++++ +-..+..+..... +...+++.. +|.    .++.+.|+|++.
T Consensus        38 ~KI~IIGaG~VG~~~a~~l~~~~l~~el~LiDi~~~~~~g~a~DL~~~~~-~~~~~~i~~~~dy----~~~~daDiVVit  112 (350)
T PLN02602         38 TKVSVVGVGNVGMAIAQTILTQDLADELALVDVNPDKLRGEMLDLQHAAA-FLPRTKILASTDY----AVTAGSDLCIVT  112 (350)
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCCCEEEEEeCCCchhhHHHHHHHhhhh-cCCCCEEEeCCCH----HHhCCCCEEEEC
Confidence            799999999989887765542233457999999885 4466677666654 223355543 342    345789999887


Q ss_pred             hhc----cCChhH----HHHHHHHHHhhc---cCCcEEEEee
Q 042119          210 ALV----GMSKEE----KLTILGHIRKYM---KDGGILLVRS  240 (286)
Q Consensus       210 alv----g~~~~~----k~~vl~~l~~~l---~pgg~lv~r~  240 (286)
                      +-+    ||+..+    -.+++..+.+.+   .|+|.+++-+
T Consensus       113 AG~~~k~g~tR~dll~~N~~I~~~i~~~I~~~~p~~ivivvt  154 (350)
T PLN02602        113 AGARQIPGESRLNLLQRNVALFRKIIPELAKYSPDTILLIVS  154 (350)
T ss_pred             CCCCCCcCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEec
Confidence            654    443322    123333333333   5788777754

>cd00300 LDH_like L-lactate dehydrogenase-like enzymes

Probab=93.67  E-value=0.55  Score=43.87  Aligned_cols=100  Identities=17%  Similarity=0.242  Sum_probs=59.5

Q ss_pred             EEEeccCCChhhHHHHHhhcCCC--cEEEEEeCChH-HHHHHHHHHHhcCCCCCCeEEEE-ccccchhhcCCCcceeehh
Q 042119          134 VAFVGSGPMPLTSIIMAKHHLTS--THFDNFDIDEA-ANDVARSIVASDAEFEGRMKFLT-RDIMEVKEQLGEYDCIFLA  209 (286)
Q Consensus       134 VL~IG~G~lp~tai~lA~~~~~g--~~V~~iDid~~-ai~~Ar~~~~~~g~l~~~i~f~~-~D~~~~~~~l~~fD~V~~a  209 (286)
                      |..||+|..|.+.......  .|  .+++.+|++++ +...+..+-.....+ ...++.. +|    ..++.+.|+|+++
T Consensus         1 i~iiGaG~VG~~~a~~l~~--~~~~~el~l~D~~~~~~~g~~~DL~~~~~~~-~~~~i~~~~~----~~~l~~aDiVIit   73 (300)
T cd00300           1 ITIIGAGNVGAAVAFALIA--KGLASELVLVDVNEEKAKGDALDLSHASAFL-ATGTIVRGGD----YADAADADIVVIT   73 (300)
T ss_pred             CEEECCCHHHHHHHHHHHh--cCCCCEEEEEeCCccHHHHHHHhHHHhcccc-CCCeEEECCC----HHHhCCCCEEEEc
Confidence            4679999888877665442  34  67999999887 445555554444312 2344443 33    2356789999988


Q ss_pred             hhc----cCChhH----HHHHHHHHHhhc---cCCcEEEEee
Q 042119          210 ALV----GMSKEE----KLTILGHIRKYM---KDGGILLVRS  240 (286)
Q Consensus       210 alv----g~~~~~----k~~vl~~l~~~l---~pgg~lv~r~  240 (286)
                      +-+    +|+..+    -..++.++.+.+   .|+|.+++-+
T Consensus        74 ag~p~~~~~~R~~l~~~n~~i~~~~~~~i~~~~p~~~viv~s  115 (300)
T cd00300          74 AGAPRKPGETRLDLINRNAPILRSVITNLKKYGPDAIILVVS  115 (300)
T ss_pred             CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEcc
Confidence            754    333322    233344444333   3888887754

Members of this subfamily are tetrameric NAD-dependent 2-hydroxycarboxylate dehydrogenases including LDHs, L-2-hydroxyisocaproate dehydrogenases (L-HicDH), and LDH-like malate dehydrogenases (MDH). Dehydrogenases catalyze the conversion of carbonyl compounds to alcohols or amino acids. LDHs catalyze the last step of glycolysis in which pyruvate is converted to L-lactate. Vertebrate LDHs are non-allosteric, but some bacterial LDHs are activated by an allosteric effector such as fructose-1,6-bisphosphate. L-HicDH catalyzes the conversion of a variety of 2-oxo carboxylic acids with medium-sized aliphatic or aromatic side chains. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH-like subfamily is part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of prot

>PRK10637 cysG siroheme synthase; Provisional

Probab=93.59  E-value=0.27  Score=48.68  Aligned_cols=103  Identities=11%  Similarity=0.166  Sum_probs=64.1

Q ss_pred             CCCCEEEEeccCCChhh-HHHHHhhcCCCcEEEEE--eCChHHHHHHHHHHHhcCCCCCCeEEEEccccchhhcCCCcce
Q 042119          129 VQPKKVAFVGSGPMPLT-SIIMAKHHLTSTHFDNF--DIDEAANDVARSIVASDAEFEGRMKFLTRDIMEVKEQLGEYDC  205 (286)
Q Consensus       129 ~~~~~VL~IG~G~lp~t-ai~lA~~~~~g~~V~~i--Did~~ai~~Ar~~~~~~g~l~~~i~f~~~D~~~~~~~l~~fD~  205 (286)
                      -.+++||.||+|..+.- +..|.+   .|++|+.|  +++++.-+++     ..    .+++++..+..  ..++.++++
T Consensus        10 l~~~~vlvvGgG~vA~rk~~~ll~---~ga~v~visp~~~~~~~~l~-----~~----~~i~~~~~~~~--~~dl~~~~l   75 (457)
T PRK10637         10 LRDRDCLLVGGGDVAERKARLLLD---AGARLTVNALAFIPQFTAWA-----DA----GMLTLVEGPFD--ESLLDTCWL   75 (457)
T ss_pred             cCCCEEEEECCCHHHHHHHHHHHH---CCCEEEEEcCCCCHHHHHHH-----hC----CCEEEEeCCCC--hHHhCCCEE
Confidence            35799999999976544 222333   68888887  5565543322     22    47899887763  456678999


Q ss_pred             eehhhhccCChhHHHHHHHHHHhhccCCcEEEEeecC-cceeeecccC
Q 042119          206 IFLAALVGMSKEEKLTILGHIRKYMKDGGILLVRSAK-GARAFLYPVV  252 (286)
Q Consensus       206 V~~aalvg~~~~~k~~vl~~l~~~l~pgg~lv~r~~~-g~r~~lyp~v  252 (286)
                      ||.+.      .++ ++=+++.+..+..|+++-...+ ....|..|.+
T Consensus        76 v~~at------~d~-~~n~~i~~~a~~~~~lvN~~d~~~~~~f~~pa~  116 (457)
T PRK10637         76 AIAAT------DDD-AVNQRVSEAAEARRIFCNVVDAPKAASFIMPSI  116 (457)
T ss_pred             EEECC------CCH-HHhHHHHHHHHHcCcEEEECCCcccCeEEEeeE
Confidence            88662      122 3445566666666777655432 3445888854

>COG0493 GltD NADPH-dependent glutamate synthase beta chain and related oxidoreductases [Amino acid transport and metabolism / General function prediction only]

Probab=93.56  E-value=0.16  Score=50.52  Aligned_cols=77  Identities=27%  Similarity=0.401  Sum_probs=54.0

Q ss_pred             CCCCEEEEeccCCChhh-HHHHHhhcCCCcEEEEEeCCh-----------------HHHHHHHHHHHhcCCCCCCeEEEE
Q 042119          129 VQPKKVAFVGSGPMPLT-SIIMAKHHLTSTHFDNFDIDE-----------------AANDVARSIVASDAEFEGRMKFLT  190 (286)
Q Consensus       129 ~~~~~VL~IG~G~lp~t-ai~lA~~~~~g~~V~~iDid~-----------------~ai~~Ar~~~~~~g~l~~~i~f~~  190 (286)
                      ..+++|+.||+||-|++ +..|++   .|..||.+|..+                 +.++...+.+++.| ..=.+....
T Consensus       121 ~tg~~VaviGaGPAGl~~a~~L~~---~G~~Vtv~e~~~~~GGll~yGIP~~kl~k~i~d~~i~~l~~~G-v~~~~~~~v  196 (457)
T COG0493         121 RTGKKVAVIGAGPAGLAAADDLSR---AGHDVTVFERVALDGGLLLYGIPDFKLPKDILDRRLELLERSG-VEFKLNVRV  196 (457)
T ss_pred             CCCCEEEEECCCchHhhhHHHHHh---CCCeEEEeCCcCCCceeEEecCchhhccchHHHHHHHHHHHcC-eEEEEcceE
Confidence            45589999999999999 677777   789999988643                 67778888888887 322233333


Q ss_pred             c-cccchhhcCCCcceeehhh
Q 042119          191 R-DIMEVKEQLGEYDCIFLAA  210 (286)
Q Consensus       191 ~-D~~~~~~~l~~fD~V~~aa  210 (286)
                      | |+. +.+-...||.||++.
T Consensus       197 G~~it-~~~L~~e~Dav~l~~  216 (457)
T COG0493         197 GRDIT-LEELLKEYDAVFLAT  216 (457)
T ss_pred             CCcCC-HHHHHHhhCEEEEec
Confidence            4 432 222235789998764

>cd01487 E1_ThiF_like E1_ThiF_like

Probab=93.55  E-value=0.6  Score=40.15  Aligned_cols=99  Identities=15%  Similarity=0.205  Sum_probs=58.1

Q ss_pred             EEEEeccCCChhh-HHHHHhhcCCCc-EEEEEeCCh------------------HHHHHHHHHHHhcCCCCCCeEEEEcc
Q 042119          133 KVAFVGSGPMPLT-SIIMAKHHLTST-HFDNFDIDE------------------AANDVARSIVASDAEFEGRMKFLTRD  192 (286)
Q Consensus       133 ~VL~IG~G~lp~t-ai~lA~~~~~g~-~V~~iDid~------------------~ai~~Ar~~~~~~g~l~~~i~f~~~D  192 (286)
                      +|+.||||.+|-. +..|++   .|. +++-+|.|.                  ...+.+++.+++.. -.-+++.+...
T Consensus         1 ~VlViG~GglGs~ia~~La~---~Gvg~i~lvD~D~v~~sNl~Rq~~~~~~vg~~Ka~~~~~~l~~ln-p~v~i~~~~~~   76 (174)
T cd01487           1 KVGIAGAGGLGSNIAVLLAR---SGVGNLKLVDFDVVEPSNLNRQQYFLSQIGEPKVEALKENLREIN-PFVKIEAINIK   76 (174)
T ss_pred             CEEEECcCHHHHHHHHHHHH---cCCCeEEEEeCCEEcCcchhcccccHhhCCChHHHHHHHHHHHHC-CCCEEEEEEee
Confidence            6899999977654 344455   555 599999986                  23444555566654 23455555544


Q ss_pred             ccc--hhhcCCCcceeehhhhccCChhHHHHHHHHHHhhccCCcEEEEee
Q 042119          193 IME--VKEQLGEYDCIFLAALVGMSKEEKLTILGHIRKYMKDGGILLVRS  240 (286)
Q Consensus       193 ~~~--~~~~l~~fD~V~~aalvg~~~~~k~~vl~~l~~~l~pgg~lv~r~  240 (286)
                      +.+  ...-+++||+|+.+.-   +.+.|..+.+.+.+.  .+-.++.-.
T Consensus        77 ~~~~~~~~~l~~~DlVi~~~d---~~~~r~~i~~~~~~~--~~ip~i~~~  121 (174)
T cd01487          77 IDENNLEGLFGDCDIVVEAFD---NAETKAMLAESLLGN--KNKPVVCAS  121 (174)
T ss_pred             cChhhHHHHhcCCCEEEECCC---CHHHHHHHHHHHHHH--CCCCEEEEe
Confidence            432  1223568999997621   235665566666655  244455444

Member of superfamily of activating enzymes (E1) of the ubiquitin-like proteins. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown.

>cd08235 iditol_2_DH_like L-iditol 2-dehydrogenase

Probab=93.49  E-value=0.32  Score=45.05  Aligned_cols=101  Identities=20%  Similarity=0.288  Sum_probs=66.5

Q ss_pred             cCCCCCCEEEEeccCCChhhHHHHHhhcCCCcE-EEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEccccc-hhh--cCC
Q 042119          126 NGVVQPKKVAFVGSGPMPLTSIIMAKHHLTSTH-FDNFDIDEAANDVARSIVASDAEFEGRMKFLTRDIME-VKE--QLG  201 (286)
Q Consensus       126 ~~~~~~~~VL~IG~G~lp~tai~lA~~~~~g~~-V~~iDid~~ai~~Ar~~~~~~g~l~~~i~f~~~D~~~-~~~--~l~  201 (286)
                      ....++.+|+..|+|.+|..++.+|++  .|.+ |++++.+++..+.+++    .| ...-+.....+..+ +..  .-.
T Consensus       161 ~~~~~g~~VlV~g~g~vg~~~~~la~~--~g~~~v~~~~~s~~~~~~~~~----~g-~~~~~~~~~~~~~~~i~~~~~~~  233 (343)
T cd08235         161 AGIKPGDTVLVIGAGPIGLLHAMLAKA--SGARKVIVSDLNEFRLEFAKK----LG-ADYTIDAAEEDLVEKVRELTDGR  233 (343)
T ss_pred             cCCCCCCEEEEECCCHHHHHHHHHHHH--cCCcEEEEECCCHHHHHHHHH----hC-CcEEecCCccCHHHHHHHHhCCc
Confidence            345788999999999999999999994  7888 9999999988776643    45 21111111111111 111  112


Q ss_pred             CcceeehhhhccCChhHHHHHHHHHHhhccCCcEEEEee
Q 042119          202 EYDCIFLAALVGMSKEEKLTILGHIRKYMKDGGILLVRS  240 (286)
Q Consensus       202 ~fD~V~~aalvg~~~~~k~~vl~~l~~~l~pgg~lv~r~  240 (286)
                      ++|+|+.+..-       ...+....+.|+++|.++.-.
T Consensus       234 ~vd~vld~~~~-------~~~~~~~~~~l~~~g~~v~~~  265 (343)
T cd08235         234 GADVVIVATGS-------PEAQAQALELVRKGGRILFFG  265 (343)
T ss_pred             CCCEEEECCCC-------hHHHHHHHHHhhcCCEEEEEe
Confidence            58998854321       146777888999999998754

Putative L-iditol 2-dehydrogenase based on annotation of some members in this subgroup. L-iditol 2-dehydrogenase catalyzes the NAD+-dependent conversion of L-iditol to L-sorbose in fructose and mannose metabolism. This enzyme is related to sorbitol dehydrogenase, alcohol dehydrogenase, and other medium chain dehydrogenase/reductases. The zinc-dependent alcohol dehydrogenase (ADH-Zn)-like family of proteins is a diverse group of proteins related to the first identified member, class I mammalian ADH. This group is also called the medium chain dehydrogenases/reductase family (MDR) to highlight its broad range of activities and to distinguish from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal GroES-like catalytic domain. The MDR group contains a host of activities, i

>cd01491 Ube1_repeat1 Ubiquitin activating enzyme (E1), repeat 1

Probab=93.44  E-value=1.7  Score=40.61  Aligned_cols=109  Identities=12%  Similarity=0.134  Sum_probs=64.4

Q ss_pred             CCCEEEEeccCCChhhHH-HHHhhcCCC-cEEEEEeCCh-------------------HHHHHHHHHHHhcCCCCCCeEE
Q 042119          130 QPKKVAFVGSGPMPLTSI-IMAKHHLTS-THFDNFDIDE-------------------AANDVARSIVASDAEFEGRMKF  188 (286)
Q Consensus       130 ~~~~VL~IG~G~lp~tai-~lA~~~~~g-~~V~~iDid~-------------------~ai~~Ar~~~~~~g~l~~~i~f  188 (286)
                      ..++||.+|+|.+|.... .|+.   .| .+++-+|-|.                   ...+.+.+.+++++ -.-+|+.
T Consensus        18 ~~s~VLIvG~gGLG~EiaKnLal---aGVg~itI~D~d~ve~snL~rqf~~~~~dIGk~Kaea~~~~L~eLN-p~V~V~~   93 (286)
T cd01491          18 QKSNVLISGLGGLGVEIAKNLIL---AGVKSVTLHDTKPCSWSDLSSQFYLREEDIGKNRAEASQARLAELN-PYVPVTV   93 (286)
T ss_pred             hcCcEEEEcCCHHHHHHHHHHHH---cCCCeEEEEcCCccchhhcccCccCChHHhCHHHHHHHHHHHHHHC-CCCEEEE
Confidence            468999999997665422 2222   34 4688888663                   34455666667766 2345666


Q ss_pred             EEccccchhhcCCCcceeehhhhccCChhHHHHHHHHHHhhccCCcEEEEeecCcceeeecc
Q 042119          189 LTRDIMEVKEQLGEYDCIFLAALVGMSKEEKLTILGHIRKYMKDGGILLVRSAKGARAFLYP  250 (286)
Q Consensus       189 ~~~D~~~~~~~l~~fD~V~~aalvg~~~~~k~~vl~~l~~~l~pgg~lv~r~~~g~r~~lyp  250 (286)
                      ..++..  ...+.+||+|+.+..   +.+.+ ..+.++.+.  .+-.++.-...|+....|.
T Consensus        94 ~~~~~~--~~~l~~fdvVV~~~~---~~~~~-~~in~~c~~--~~ipfI~a~~~G~~G~vf~  147 (286)
T cd01491          94 STGPLT--TDELLKFQVVVLTDA---SLEDQ-LKINEFCHS--PGIKFISADTRGLFGSIFC  147 (286)
T ss_pred             EeccCC--HHHHhcCCEEEEecC---CHHHH-HHHHHHHHH--cCCEEEEEeccccEEEEEe
Confidence            655532  234468999886532   22333 334444433  4556777777787776555

E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Ubiquitin-E1 is a single-chain protein with a weakly conserved two-fold repeat. This CD represents the first repeat of Ub-E1.

>PRK00141 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=93.38  E-value=0.27  Score=48.81  Aligned_cols=71  Identities=13%  Similarity=0.101  Sum_probs=47.3

Q ss_pred             CCCEEEEeccCCChhhHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEccccchhhcCCCcceeehh
Q 042119          130 QPKKVAFVGSGPMPLTSIIMAKHHLTSTHFDNFDIDEAANDVARSIVASDAEFEGRMKFLTRDIMEVKEQLGEYDCIFLA  209 (286)
Q Consensus       130 ~~~~VL~IG~G~lp~tai~lA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~g~l~~~i~f~~~D~~~~~~~l~~fD~V~~a  209 (286)
                      .+++|+++|+|..|++...+..  ..|++|++.|.++...   .++....|     +++..+...  ...+.++|+|+.+
T Consensus        14 ~~~~v~v~G~G~sG~a~a~~L~--~~G~~V~~~D~~~~~~---~~~l~~~g-----i~~~~~~~~--~~~~~~~d~vV~S   81 (473)
T PRK00141         14 LSGRVLVAGAGVSGRGIAAMLS--ELGCDVVVADDNETAR---HKLIEVTG-----VADISTAEA--SDQLDSFSLVVTS   81 (473)
T ss_pred             cCCeEEEEccCHHHHHHHHHHH--HCCCEEEEECCChHHH---HHHHHhcC-----cEEEeCCCc--hhHhcCCCEEEeC
Confidence            4678999999988887555554  3789999999875432   23334445     556555321  2234579999887


Q ss_pred             hhc
Q 042119          210 ALV  212 (286)
Q Consensus       210 alv  212 (286)
                      ..|
T Consensus        82 pgi   84 (473)
T PRK00141         82 PGW   84 (473)
T ss_pred             CCC
Confidence            766

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	286
3fpe_A	298	Crystal Structure Of Mtnas In Complex With Thermoni		2e-09
3o31_A	296	E81q Mutant Of Mtnas In Complex With A Reaction Int		3e-09
3fpg_A	298	Crystal Structure Of E81q Mutant Of Mtnas Length =		4e-09

>pdb|3FPE|A Chain A, Crystal Structure Of Mtnas In Complex With Thermonicotianamine Length = 298

Iteration: 1
 Score = 60.1 bits (144), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 53/195 (27%), Positives = 95/195 (48%), Gaps = 13/195 (6%)
Query: 85  LELEFATFLTKIPQPLNNLSLFPYYGNYVKLSKLEYTILSENGVVQPKKVAFVGSGPMPL 144
           LE+E A  + +   P   L  F +Y  Y++L K E  +       + ++  F+G GP+PL
Sbjct: 80  LEMEKAQEVIESDSPWETLRSFYFYPRYLELLKNEAAL---GRFRRGERAVFIGGGPLPL 136
Query: 145 TSIIMAKHHLTSTHFDNFDIDEAANDVARSIVASDAEFEGRMKFLTRDIMEVKEQLGEYD 204
           T I+++  H+     +  +I+    +++R ++      +G +  +T D   V + L E+D
Sbjct: 137 TGILLS--HVYGMRVNVVEIEPDIAELSRKVIEGLG-VDG-VNVITGD-ETVIDGL-EFD 190
Query: 205 CIFLAALVGMSKEEKLTILGHIRKYMKDGGILLVRSAKGARAFLYPVVVEHDLLDFEVLS 264
            + +AAL     E K  +  +I +Y+     ++ R+  G RA LY  V + D+  F    
Sbjct: 191 VLMVAALA----EPKRRVFRNIHRYVDTETRIIYRTYTGMRAILYAPVSDDDITGFRRAG 246
Query: 265 AVHPNDDVINSVVLV 279
            V P+  V N+ VLV
Sbjct: 247 VVLPSGKVNNTSVLV 261

>pdb|3O31|A Chain A, E81q Mutant Of Mtnas In Complex With A Reaction Intermediate Length = 296

Iteration: 1
 Score = 58.9 bits (141), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 52/195 (26%), Positives = 95/195 (48%), Gaps = 13/195 (6%)
Query: 85  LELEFATFLTKIPQPLNNLSLFPYYGNYVKLSKLEYTILSENGVVQPKKVAFVGSGPMPL 144
           L++E A  + +   P   L  F +Y  Y++L K E  +       + ++  F+G GP+PL
Sbjct: 79  LQMEKAQEVIESDSPWETLRSFYFYPRYLELLKNEAAL---GRFRRGERAVFIGGGPLPL 135
Query: 145 TSIIMAKHHLTSTHFDNFDIDEAANDVARSIVASDAEFEGRMKFLTRDIMEVKEQLGEYD 204
           T I+++  H+     +  +I+    +++R ++      +G +  +T D   V + L E+D
Sbjct: 136 TGILLS--HVYGMRVNVVEIEPDIAELSRKVIEGLG-VDG-VNVITGD-ETVIDGL-EFD 189
Query: 205 CIFLAALVGMSKEEKLTILGHIRKYMKDGGILLVRSAKGARAFLYPVVVEHDLLDFEVLS 264
            + +AAL     E K  +  +I +Y+     ++ R+  G RA LY  V + D+  F    
Sbjct: 190 VLMVAALA----EPKRRVFRNIHRYVDTETRIIYRTYTGMRAILYAPVSDDDITGFRRAG 245
Query: 265 AVHPNDDVINSVVLV 279
            V P+  V N+ VLV
Sbjct: 246 VVLPSGKVNNTSVLV 260

>pdb|3FPG|A Chain A, Crystal Structure Of E81q Mutant Of Mtnas Length = 298

Iteration: 1
 Score = 58.5 bits (140), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 52/195 (26%), Positives = 95/195 (48%), Gaps = 13/195 (6%)
Query: 85  LELEFATFLTKIPQPLNNLSLFPYYGNYVKLSKLEYTILSENGVVQPKKVAFVGSGPMPL 144
           L++E A  + +   P   L  F +Y  Y++L K E  +       + ++  F+G GP+PL
Sbjct: 80  LQMEKAQEVIESDSPWETLRSFYFYPRYLELLKNEAAL---GRFRRGERAVFIGGGPLPL 136
Query: 145 TSIIMAKHHLTSTHFDNFDIDEAANDVARSIVASDAEFEGRMKFLTRDIMEVKEQLGEYD 204
           T I+++  H+     +  +I+    +++R ++      +G +  +T D   V + L E+D
Sbjct: 137 TGILLS--HVYGMRVNVVEIEPDIAELSRKVIEGLG-VDG-VNVITGD-ETVIDGL-EFD 190
Query: 205 CIFLAALVGMSKEEKLTILGHIRKYMKDGGILLVRSAKGARAFLYPVVVEHDLLDFEVLS 264
            + +AAL     E K  +  +I +Y+     ++ R+  G RA LY  V + D+  F    
Sbjct: 191 VLMVAALA----EPKRRVFRNIHRYVDTETRIIYRTYTGMRAILYAPVSDDDITGFRRAG 246
Query: 265 AVHPNDDVINSVVLV 279
            V P+  V N+ VLV
Sbjct: 247 VVLPSGKVNNTSVLV 261

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	286
3fpf_A	298	Mtnas, putative uncharacterized protein; thermonic	3e-66
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	8e-06
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	1e-04
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	2e-04
3mcz_A	352	O-methyltransferase; adomet_mtases, S-adenosylmeth	4e-05
2r3s_A	335	Uncharacterized protein; methyltransferase domain,	2e-04
3dp7_A	363	SAM-dependent methyltransferase; structural genomi	2e-04
3f4k_A	257	Putative methyltransferase; structural genomics, P	8e-04

>3fpf_A Mtnas, putative uncharacterized protein; thermonicotianamine, nicotianamine, biosynthetic protein; HET: TNA MTA; 1.66A {Methanothermobacter thermautotrophicusorganism_taxid} PDB: 3fpe_A* 3fph_A* 3fpg_A* 3fpj_A* 3o31_A* Length = 298

 Score =  208 bits (529), Expect = 3e-66
 Identities = 57/273 (20%), Positives = 112/273 (41%), Gaps = 20/273 (7%)

Query: 15  AELLIASVMQIHASISKLESLKPSKQVNSIFSRLVKLCTI--PSSIDITALPQ-----EV 67
             +    + +I + +  +         + +   L ++  I   S+ID  +        E+
Sbjct: 3   CYIYWDKIKRIASRLEGMNYHFDEMDTSGVMPLLDEIEEIAHDSTIDFESAKHILDDAEM 62

Query: 68  QKMRESLIVLCGRAEGLLELEFATFLTKIPQPLNNLSLFPYYGNYVKLSKLEYTILSENG 127
                 +          LE+E A  + +   P   L  F +Y  Y++L K E  +     
Sbjct: 63  NHALSLIRKFYVNLGMKLEMEKAQEVIESDSPWETLRSFYFYPRYLELLKNEAALG---R 119

Query: 128 VVQPKKVAFVGSGPMPLTSIIMAKHHLTSTHFDNFDIDEAANDVARSIVASDAEFEGRMK 187
             + ++  F+G GP+PLT I+++  H+     +  +I+    +++R ++         + 
Sbjct: 120 FRRGERAVFIGGGPLPLTGILLS--HVYGMRVNVVEIEPDIAELSRKVIEGLGV--DGVN 175

Query: 188 FLTRDIMEVKEQLGEYDCIFLAALVGMSKEEKLTILGHIRKYMKDGGILLVRSAKGARAF 247
            +T D   +     E+D + +AAL     E K  +  +I +Y+     ++ R+  G RA 
Sbjct: 176 VITGDETVI--DGLEFDVLMVAALA----EPKRRVFRNIHRYVDTETRIIYRTYTGMRAI 229

Query: 248 LYPVVVEHDLLDFEVLSAVHPNDDVINSVVLVR 280
           LY  V + D+  F     V P+  V N+ VLV 
Sbjct: 230 LYAPVSDDDITGFRRAGVVLPSGKVNNTSVLVF 262

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 46.0 bits (108), Expect = 8e-06
 Identities = 44/296 (14%), Positives = 85/296 (28%), Gaps = 75/296 (25%)

Query: 22  VMQIHASISKLESLKPSKQVNSIF-------SRLVKLCTIPSSIDITALPQEVQKMRESL 74
            +++      L  L+P+K V  I        + +              L  +VQ   +  
Sbjct: 137 YLKLR---QALLELRPAKNV-LIDGVLGSGKTWVALD---------VCLSYKVQCKMDFK 183

Query: 75  IV-----LCGRAEGLLELEFATFLTKIPQPLNNLSLFPYYGNYVKLSKLEYTILSENGVV 129
           I       C   E +LE             L  L L+    N+   S     I      +
Sbjct: 184 IFWLNLKNCNSPETVLE------------MLQKL-LYQIDPNWTSRSDHSSNIKLRIHSI 230

Query: 130 QPKKVAFVGSGPMPLTSIIMAKHHL-TSTHFDNFDI---------DEAANDVARSIVASD 179
           Q +    + S P     +++   ++  +  ++ F++          +   D   +   + 
Sbjct: 231 QAELRRLLKSKPYENCLLVLL--NVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTH 288

Query: 180 AEFEGRMKFLTRDIMEVKEQLGEY-DCI-------------FLAALVGMSKEEKLTILGH 225
              +     LT D  EVK  L +Y DC                 +++  S  + L    +
Sbjct: 289 ISLDHHSMTLTPD--EVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDN 346

Query: 226 IRKYMKDGGILLVRSAKGARAFLYPVVVEHDLLDFEVLSAVHPNDDV-INSVVLVR 280
            +    D    L    + +   L P           V           I +++L  
Sbjct: 347 WKHVNCDK---LTTIIESSLNVLEPAEYRKMFDRLSVF-----PPSAHIPTILLSL 394

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 42.5 bits (99), Expect = 1e-04
 Identities = 43/285 (15%), Positives = 82/285 (28%), Gaps = 72/285 (25%)

Query: 15  AELLIASVMQIHASISKLESLKPSKQVNSIFSRLVKLCTIPSSIDITALPQEVQKMRESL 74
            + L A+     +      +L P  +V S+  + +             LP+EV       
Sbjct: 278 TDFLSAATTTHISLDHHSMTLTPD-EVKSLLLKYL-------DCRPQDLPREVLTTNPRR 329

Query: 75  IVLCG--------RAEGLLELEFATFLTKIPQPLNNLSLFPYYGNYVKLSKLEYTILSEN 126
           + +            +    +      T I   LN L    Y   + +LS     +   +
Sbjct: 330 LSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLS-----VFPPS 384

Query: 127 GVVQPKKV------AFVGSGPMPLTSIIMAKHH---LTSTHFDNF-----DID-----EA 167
               P  +        + S  M    +++ K H   L              I      + 
Sbjct: 385 -AHIPTILLSLIWFDVIKSDVM----VVVNKLHKYSLVEKQPKESTISIPSIYLELKVKL 439

Query: 168 ANDVA--RSIVASDAEFEGRMKFLTRDIMEVKEQLGEYDCIFLAA-LVGMSKEEKLTILG 224
            N+ A  RSIV     +     F + D+  +   L +Y    +   L  +   E++T+  
Sbjct: 440 ENEYALHRSIVDH---YNIPKTFDSDDL--IPPYLDQYFYSHIGHHLKNIEHPERMTLFR 494

Query: 225 HI--------RKYMKDGGILLVRSAKGARAFLYPVVVEHDLLDFE 261
            +        +K   D       +A  A   +        L   +
Sbjct: 495 MVFLDFRFLEQKIRHDS------TAWNASGSILN-----TLQQLK 528

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 41.8 bits (97), Expect = 2e-04
 Identities = 39/245 (15%), Positives = 70/245 (28%), Gaps = 91/245 (37%)

Query: 59  DITALPQEVQKMRESLIVLCGRA--------EGLLELEFATFLTKIP----QPLNNLSLF 106
            I      V         L  +         E +L + +   ++ I     QP     ++
Sbjct: 53  HIIMSKDAVSGTLRLFWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMY 112

Query: 107 PYYGN--------YVKLS--------KLEYTILSENGVVQPKKVAFV----GSGPMPLTS 146
               +        + K +        KL    L E   ++P K   +    GSG      
Sbjct: 113 IEQRDRLYNDNQVFAKYNVSRLQPYLKLR-QALLE---LRPAKNVLIDGVLGSG------ 162

Query: 147 IIMAKHHLTSTHFDNFDIDEAANDVARSIVASDAEFEGRMKF----LT-------RDIME 195
               K  +             A DV         + + +M F    L          ++E
Sbjct: 163 ----KTWV-------------ALDVCL-----SYKVQCKMDFKIFWLNLKNCNSPETVLE 200

Query: 196 VKEQL-GEYDCIFLAALVGMSK--------EEKLTILGHIRKYMKDGGILL----VRSAK 242
           + ++L  + D  + +     S         + +L  L   + Y      LL    V++AK
Sbjct: 201 MLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENC---LLVLLNVQNAK 257

Query: 243 GARAF 247
              AF
Sbjct: 258 AWNAF 262

>3mcz_A O-methyltransferase; adomet_mtases, S-adenosylmethionine-dependent methyltransfer structural genomics, PSI-2; HET: MSE; 1.90A {Burkholderia thailandensis} Length = 352

 Score = 43.5 bits (103), Expect = 4e-05
 Identities = 23/105 (21%), Positives = 45/105 (42%), Gaps = 8/105 (7%)

Query: 137 VGSGPMPLTSIIMAKH-HLTSTHFDNFDIDEAANDVARSIVASDAEFEGRMKFLTRDIME 195
           +  G     + ++ +H  LT      +D+     D AR  +    +  GR++F  +++++
Sbjct: 186 LAGGHGTYLAQVLRRHPQLTGQ---IWDLPTTR-DAARKTIH-AHDLGGRVEFFEKNLLD 240

Query: 196 -VKEQLGEYDCIFLAA-LVGMSKEEKLTILGHIRKYMKDGGILLV 238
               + G  D + L   L      E   ++GH    +K GG LL+
Sbjct: 241 ARNFEGGAADVVMLNDCLHYFDAREAREVIGHAAGLVKPGGALLI 285

>2r3s_A Uncharacterized protein; methyltransferase domain, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE; 2.15A {Nostoc punctiforme} Length = 335

 Score = 41.2 bits (97), Expect = 2e-04
 Identities = 12/104 (11%), Positives = 28/104 (26%), Gaps = 8/104 (7%)

Query: 137 VGSGPMPLTSIIMAKH-HLTSTHFDNFDIDEAANDVARSIVASDAEFEGRMKFLTRDIME 195
           + +        +   + +         D      +VA+           R   +      
Sbjct: 172 ISASHGLFGIAVAQHNPNAEIF---GVDWASVL-EVAKENAR-IQGVASRYHTIAGS-AF 225

Query: 196 VKEQLGEYDCIFLAA-LVGMSKEEKLTILGHIRKYMKDGGILLV 238
             +   +YD + L   L          +L  I+  +   G ++V
Sbjct: 226 EVDYGNDYDLVLLPNFLHHFDVATCEQLLRKIKTALAVEGKVIV 269

>3dp7_A SAM-dependent methyltransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research; 2.33A {Bacteroides vulgatus} Length = 363

 Score = 41.2 bits (97), Expect = 2e-04
 Identities = 15/111 (13%), Positives = 44/111 (39%), Gaps = 8/111 (7%)

Query: 131 PKKVAFVGSGPMPLTSIIMAKH-HLTSTHFDNFDIDEAANDVARSIVASDAEFEGRMKFL 189
           PK++  +G       +  +  +  +  T     D+ +   ++ R   A       R+   
Sbjct: 180 PKRLLDIGGNTGKWATQCVQYNKEVEVT---IVDLPQQL-EMMRKQTA-GLSGSERIHGH 234

Query: 190 TRDIMEVKEQLGE-YDCIFLAA-LVGMSKEEKLTILGHIRKYMKDGGILLV 238
             ++++        +D ++++  L   S+EE ++IL  + + +     + +
Sbjct: 235 GANLLDRDVPFPTGFDAVWMSQFLDCFSEEEVISILTRVAQSIGKDSKVYI 285

>3f4k_A Putative methyltransferase; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.30A {Bacteroides thetaiotaomicron} PDB: 3t0i_A* 3svz_A* 3sxj_A* Length = 257

 Score = 39.1 bits (91), Expect = 8e-04
 Identities = 23/126 (18%), Positives = 45/126 (35%), Gaps = 6/126 (4%)

Query: 130 QPKKVAFVGSGPMPLTSIIMAKHHLTSTHFDNFDIDEAANDVARSIVASDAEFEGRMKFL 189
              K+A +G G     ++ +A +          D+     ++     A  A    R+K +
Sbjct: 46  DDAKIADIGCGT-GGQTLFLADY--VKGQITGIDLFPDFIEIFNEN-AVKANCADRVKGI 101

Query: 190 TRDIMEVKEQLGEYDCIFLAALVGMSKEEKLTILGHIRKYMKDGGILLVRSAKGARAFLY 249
           T  +  +  Q  E D I+    +     E+   +    KY+K GG + V  A    +   
Sbjct: 102 TGSMDNLPFQNEELDLIWSEGAIYNIGFERG--MNEWSKYLKKGGFIAVSEASWFTSERP 159

Query: 250 PVVVEH 255
             + + 
Sbjct: 160 AEIEDF 165

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	286
3fpf_A	298	Mtnas, putative uncharacterized protein; thermonic	100.0
4gek_A	261	TRNA (CMO5U34)-methyltransferase; structural genom	99.74
2xvm_A	199	Tellurite resistance protein TEHB; antibiotic resi	99.67
3r3h_A	242	O-methyltransferase, SAM-dependent; structural gen	99.65
3dr5_A	221	Putative O-methyltransferase; Q8NRD3, CGL1119, PF0	99.65
3ocj_A	305	Putative exported protein; structural genomics, PS	99.64
1pjz_A	203	Thiopurine S-methyltransferase; polymorphism, S-ad	99.63
3duw_A	223	OMT, O-methyltransferase, putative; alternating of	99.63
3dh0_A	219	SAM dependent methyltransferase; cystal structure,	99.63
1xdz_A	240	Methyltransferase GIDB; MCSG, protein structure in	99.62
3mti_A	185	RRNA methylase; SAM-dependent, PSI, MCSG, structur	99.62
3e05_A	204	Precorrin-6Y C5,15-methyltransferase (decarboxyla;	99.62
3tfw_A	248	Putative O-methyltransferase; PSI-biology, nysgrc,	99.61
1jsx_A	207	Glucose-inhibited division protein B; methyltransf	99.61
3ntv_A	232	MW1564 protein; rossmann fold, putative methyltran	99.61
3njr_A	204	Precorrin-6Y methylase; methyltransferase, decarbo	99.61
1sui_A	247	Caffeoyl-COA O-methyltransferase; rossmann fold, p	99.6
3p9n_A	189	Possible methyltransferase (methylase); RV2966C, a	99.6
2gb4_A	252	Thiopurine S-methyltransferase; 18204406, thiopuri	99.6
3tr6_A	225	O-methyltransferase; cellular processes; HET: SAH;	99.6
3orh_A	236	Guanidinoacetate N-methyltransferase; structura ge	99.6
3c3y_A	237	Pfomt, O-methyltransferase; plant secondary metabo	99.59
3g89_A	249	Ribosomal RNA small subunit methyltransferase G; 1	99.59
2o57_A	297	Putative sarcosine dimethylglycine methyltransfera	99.59
3jwg_A	219	HEN1, methyltransferase type 12; 1.90A {Clostridiu	99.59
3kkz_A	267	Uncharacterized protein Q5LES9; putative methyltra	99.59
3lcc_A	235	Putative methyl chloride transferase; halide methy	99.59
1nkv_A	256	Hypothetical protein YJHP; structural genomics, PS	99.59
3hm2_A	178	Precorrin-6Y C5,15-methyltransferase; alpha-beta-s	99.58
3f4k_A	257	Putative methyltransferase; structural genomics, P	99.58
3c3p_A	210	Methyltransferase; NP_951602.1, structural genomic	99.58
3u81_A	221	Catechol O-methyltransferase; neurotransmitter deg	99.58
3bus_A	273	REBM, methyltransferase; rebeccamycin synthesis; H	99.58
3dlc_A	219	Putative S-adenosyl-L-methionine-dependent methylt	99.57
3m70_A	286	Tellurite resistance protein TEHB homolog; structu	99.57
3eey_A	197	Putative rRNA methylase; rRNA methylation, S-adeno	99.57
3jwh_A	217	HEN1; methyltransferase; HET: SAH; 2.20A {Anabaena	99.57
3g5t_A	299	Trans-aconitate 3-methyltransferase; structural ge	99.57
1y8c_A	246	S-adenosylmethionine-dependent methyltransferase;	99.57
1kpg_A	287	CFA synthase;, cyclopropane-fatty-acyl-phospholipi	99.56
3cbg_A	232	O-methyltransferase; cyanobacterium; HET: SAH FER	99.56
3hem_A	302	Cyclopropane-fatty-acyl-phospholipid synthase 2; p	99.56
1vl5_A	260	Unknown conserved protein BH2331; putative methylt	99.56
2p8j_A	209	S-adenosylmethionine-dependent methyltransferase;	99.55
3g2m_A	299	PCZA361.24; SAM-dependent methyltransferase, glyco	99.55
1x19_A	359	CRTF-related protein; methyltransferase, bacterioc	99.55
3dtn_A	234	Putative methyltransferase MM_2633; structural gen	99.55
2avd_A	229	Catechol-O-methyltransferase; structural genomics,	99.55
3vc1_A	312	Geranyl diphosphate 2-C-methyltransferase; rossman	99.54
1wzn_A	252	SAM-dependent methyltransferase; structural genomi	99.54
3mb5_A	255	SAM-dependent methyltransferase; RNA methyltransfe	99.53
3lec_A	230	NADB-rossmann superfamily protein; PSI, MCSG, stru	99.53
2fk8_A	318	Methoxy mycolic acid synthase 4; S-adenosylmethion	99.53
2gpy_A	233	O-methyltransferase; structural genomics, PSI, pro	99.53
3e8s_A	227	Putative SAM dependent methyltransferase; NP_74470	99.53
4htf_A	285	S-adenosylmethionine-dependent methyltransferase;	99.53
3mgg_A	276	Methyltransferase; NYSGXRC, PSI-II, protein struct	99.53
2a14_A	263	Indolethylamine N-methyltransferase; SGC,INMT, str	99.52
3dp7_A	363	SAM-dependent methyltransferase; structural genomi	99.52
3kr9_A	225	SAM-dependent methyltransferase; class I rossmann-	99.52
3h2b_A	203	SAM-dependent methyltransferase; alpha-beta protei	99.51
2kw5_A	202	SLR1183 protein; structural genomics, northeast st	99.51
3ofk_A	216	Nodulation protein S; NODS, N-methyltransferase, S	99.51
1zx0_A	236	Guanidinoacetate N-methyltransferase; structural g	99.51
3hnr_A	220	Probable methyltransferase BT9727_4108; structural	99.51
3i53_A	332	O-methyltransferase; CO-complex, rossmann-like fol	99.51
3ujc_A	266	Phosphoethanolamine N-methyltransferase; parasite;	99.51
2hnk_A	239	SAM-dependent O-methyltransferase; modified rossma	99.51
1xxl_A	239	YCGJ protein; structural genomics, protein structu	99.5
2fca_A	213	TRNA (guanine-N(7)-)-methyltransferase; 2.10A {Bac	99.5
1ve3_A	227	Hypothetical protein PH0226; dimer, riken structur	99.5
2r3s_A	335	Uncharacterized protein; methyltransferase domain,	99.5
3pfg_A	263	N-methyltransferase; N,N-dimethyltransferase, SAM	99.5
3g07_A	292	7SK snRNA methylphosphate capping enzyme; structur	99.49
1dus_A	194	MJ0882; hypothetical protein, methanococcus jannas	99.49
3cgg_A	195	SAM-dependent methyltransferase; NP_600671.1, meth	99.49
3sm3_A	235	SAM-dependent methyltransferases; NESG, structural	99.49
3dxy_A	218	TRNA (guanine-N(7)-)-methyltransferase; rossmann f	99.49
1l3i_A	192	Precorrin-6Y methyltransferase/putative decarboxyl	99.48
1yzh_A	214	TRNA (guanine-N(7)-)-methyltransferase; alpha-beta	99.48
3bxo_A	239	N,N-dimethyltransferase; desosamine, sugar, carboh	99.48
1nt2_A	210	Fibrillarin-like PRE-rRNA processing protein; adeM	99.48
4hg2_A	257	Methyltransferase type 11; structural genomics, PS	99.47
1ri5_A	298	MRNA capping enzyme; methyltransferase, M7G, messe	99.47
2pxx_A	215	Uncharacterized protein MGC2408; structural genomi	99.46
2ex4_A	241	Adrenal gland protein AD-003; methyltransferase, s	99.46
3ou2_A	218	SAM-dependent methyltransferase; O-methyltransfera	99.46
2vdw_A	302	Vaccinia virus capping enzyme D1 subunit; nucleoti	99.46
3lbf_A	210	Protein-L-isoaspartate O-methyltransferase; modifi	99.46
3evz_A	230	Methyltransferase; NYSGXRC, NEW YORK SGX research	99.46
3uwp_A	438	Histone-lysine N-methyltransferase, H3 lysine-79;	99.46
2p35_A	259	Trans-aconitate 2-methyltransferase; SAM dependent	99.46
2i62_A	265	Nicotinamide N-methyltransferase; structural genom	99.46
2ift_A	201	Putative methylase HI0767; NESG, Y767_haein, struc	99.46
3g5l_A	253	Putative S-adenosylmethionine dependent methyltran	99.46
2ip2_A	334	Probable phenazine-specific methyltransferase; pyo	99.45
3ggd_A	245	SAM-dependent methyltransferase; YP_325210.1, stru	99.45
3i9f_A	170	Putative type 11 methyltransferase; structural gen	99.45
3gu3_A	284	Methyltransferase; alpha-beta protein, structural	99.45
2yqz_A	263	Hypothetical protein TTHA0223; RNA methyltransfera	99.45
3gnl_A	244	Uncharacterized protein, DUF633, LMOF2365_1472; st	99.45
1tw3_A	360	COMT, carminomycin 4-O-methyltransferase; anthracy	99.44
4df3_A	233	Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase;	99.44
4fsd_A	383	Arsenic methyltransferase; rossmann fold; 1.75A {C	99.44
3thr_A	293	Glycine N-methyltransferase; GNMT, folate, methylt	99.44
3gjy_A	317	Spermidine synthase; APC62791, structural genomics	99.44
4dzr_A	215	Protein-(glutamine-N5) methyltransferase, release	99.44
2fyt_A	340	Protein arginine N-methyltransferase 3; structural	99.43
3r0q_C	376	Probable protein arginine N-methyltransferase 4.2;	99.43
2qe6_A	274	Uncharacterized protein TFU_2867; putative methylt	99.43
3cvo_A	202	Methyltransferase-like protein of unknown functio;	99.43
3ckk_A	235	TRNA (guanine-N(7)-)-methyltransferase; mettl1, S-	99.43
3id6_C	232	Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase;	99.43
3d2l_A	243	SAM-dependent methyltransferase; ZP_00538691.1, st	99.42
2esr_A	177	Methyltransferase; structural genomics, hypothetic	99.42
3grz_A	205	L11 mtase, ribosomal protein L11 methyltransferase	99.42
1xtp_A	254	LMAJ004091AAA; SGPP, structural genomics, PSI, pro	99.42
3gwz_A	369	MMCR; methyltransferase, mitomycin, S-adenosyl met	99.42
3mcz_A	352	O-methyltransferase; adomet_mtases, S-adenosylmeth	99.42
2fhp_A	187	Methylase, putative; alpha-beta-alpha sandwich, st	99.42
3lpm_A	259	Putative methyltransferase; structural genomics, p	99.41
2yxd_A	183	Probable cobalt-precorrin-6Y C(15)-methyltransfer	99.41
3bkx_A	275	SAM-dependent methyltransferase; YP_807781.1, cycl	99.41
3e23_A	211	Uncharacterized protein RPA2492; alpha-beta protei	99.41
2p7i_A	250	Hypothetical protein; putative methyltransferase,	99.41
4a6d_A	353	Hydroxyindole O-methyltransferase; melatonin, circ	99.4
3fzg_A	200	16S rRNA methylase; methyltransferase, plasmid, tr	99.4
2nxc_A	254	L11 mtase, ribosomal protein L11 methyltransferase	99.4
1xj5_A	334	Spermidine synthase 1; structural genomics, protei	99.4
2bm8_A	236	Cephalosporin hydroxylase CMCI; cephamycin biosynt	99.4
3l8d_A	242	Methyltransferase; structural genomics, PSI, nysgr	99.39
3dli_A	240	Methyltransferase; PSI-II, NYSGXRC, structural gen	99.39
2fpo_A	202	Methylase YHHF; structural genomics, putative meth	99.39
1qzz_A	374	RDMB, aclacinomycin-10-hydroxylase; anthracycline,	99.39
1yb2_A	275	Hypothetical protein TA0852; structural genomics,	99.39
1u2z_A	433	Histone-lysine N-methyltransferase, H3 lysine-79 s	99.38
1fbn_A	230	MJ fibrillarin homologue; MJ proteins, ribosomal R	99.38
2pwy_A	258	TRNA (adenine-N(1)-)-methyltransferase; mtase, ado	99.38
2ozv_A	260	Hypothetical protein ATU0636; structural genomics,	99.38
3gdh_A	241	Trimethylguanosine synthase homolog; M7G, CAP, dim	99.38
2pbf_A	227	Protein-L-isoaspartate O-methyltransferase beta-A	99.38
3q7e_A	349	Protein arginine N-methyltransferase 1; HET: SAH;	99.38
2ipx_A	233	RRNA 2'-O-methyltransferase fibrillarin; FBL, stru	99.38
2g72_A	289	Phenylethanolamine N-methyltransferase; HET: SAM F	99.38
1nv8_A	284	HEMK protein; class I adoMet-dependent methyltrans	99.38
3ccf_A	279	Cyclopropane-fatty-acyl-phospholipid synthase; YP_	99.37
2b2c_A	314	Spermidine synthase; beta-alpha, transferase; 2.50	99.37
3bkw_A	243	MLL3908 protein, S-adenosylmethionine dependent me	99.37
1p91_A	269	Ribosomal RNA large subunit methyltransferase A; R	99.37
3mq2_A	218	16S rRNA methyltransferase; methyltranferase, ribo	99.37
1o54_A	277	SAM-dependent O-methyltransferase; TM0748, structu	99.37
3tma_A	354	Methyltransferase; thump domain; 2.05A {Thermus th	99.37
3m33_A	226	Uncharacterized protein; structural genomics, PSI-	99.37
1ws6_A	171	Methyltransferase; structural genomics, riken stru	99.37
1i1n_A	226	Protein-L-isoaspartate O-methyltransferase; S-aden	99.37
2yxe_A	215	Protein-L-isoaspartate O-methyltransferase; rossma	99.37
2frn_A	278	Hypothetical protein PH0793; structural genomics,	99.37
2gs9_A	211	Hypothetical protein TT1324; methyl transferase, s	99.37
3p2e_A	225	16S rRNA methylase; methyltransferase, transferase	99.36
2yvl_A	248	TRMI protein, hypothetical protein; tRNA, methyltr	99.36
1i9g_A	280	Hypothetical protein RV2118C; mtase, adoMet, cryst	99.36
3ege_A	261	Putative methyltransferase from antibiotic biosyn	99.36
1ixk_A	315	Methyltransferase; open beta sheet; 1.90A {Pyrococ	99.36
1mjf_A	281	Spermidine synthase; spermidine synthetase, struct	99.36
3adn_A	294	Spermidine synthase; aminopropyltransferase, polya	99.36
3ajd_A	274	Putative methyltransferase MJ0026; tRNA, M5C, ross	99.35
3iv6_A	261	Putative Zn-dependent alcohol dehydrogenase; alpha	99.35
3bgv_A	313	MRNA CAP guanine-N7 methyltransferase; alternative	99.35
2vdv_E	246	TRNA (guanine-N(7)-)-methyltransferase; S-adenosyl	99.35
1dl5_A	317	Protein-L-isoaspartate O-methyltransferase; isoasp	99.34
1g8a_A	227	Fibrillarin-like PRE-rRNA processing protein; rRNA	99.34
4dcm_A	375	Ribosomal RNA large subunit methyltransferase G; 2	99.33
2o07_A	304	Spermidine synthase; structural genomics, structur	99.33
2i7c_A	283	Spermidine synthase; transferase, structural genom	99.33
3bwc_A	304	Spermidine synthase; SAM, SGPP, structura genomics	99.33
1iy9_A	275	Spermidine synthase; rossmann fold, structural gen	99.33
1uir_A	314	Polyamine aminopropyltransferase; spermidien synth	99.32
2b3t_A	276	Protein methyltransferase HEMK; translation termin	99.32
2igt_A	332	SAM dependent methyltransferase; alpha-beta sandwi	99.32
2pt6_A	321	Spermidine synthase; transferase, structural genom	99.32
2aot_A	292	HMT, histamine N-methyltransferase; classic methyl	99.31
2y1w_A	348	Histone-arginine methyltransferase CARM1; histone	99.31
2avn_A	260	Ubiquinone/menaquinone biosynthesis methyltransfe	99.31
1g6q_1	328	HnRNP arginine N-methyltransferase; SAM-binding do	99.31
1vbf_A	231	231AA long hypothetical protein-L-isoaspartate O-	99.3
1inl_A	296	Spermidine synthase; beta-barrel, rossman fold, st	99.3
3dmg_A	381	Probable ribosomal RNA small subunit methyltransf;	99.3
1o9g_A	250	RRNA methyltransferase; antibiotic resistance, Se-	99.29
3bzb_A	281	Uncharacterized protein; RED ALGA, protein structu	99.29
2b25_A	336	Hypothetical protein; structural genomics, methyl	99.27
3htx_A	950	HEN1; HEN1, small RNA methyltransferase, protein-R	99.27
3a27_A	272	TYW2, uncharacterized protein MJ1557; wybutosine m	99.27
3b3j_A	480	Histone-arginine methyltransferase CARM1; protein	99.26
4hc4_A	376	Protein arginine N-methyltransferase 6; HRMT1L6, S	99.26
1jg1_A	235	PIMT;, protein-L-isoaspartate O-methyltransferase;	99.26
3lst_A	348	CALO1 methyltransferase; calicheamicin, enediyne,	99.26
3sso_A	419	Methyltransferase; macrolide, natural product, ros	99.26
1af7_A	274	Chemotaxis receptor methyltransferase CHER; chemot	99.26
2h00_A	254	Methyltransferase 10 domain containing protein; st	99.25
2qm3_A	373	Predicted methyltransferase; putative methyltransf	99.24
2b78_A	385	Hypothetical protein SMU.776; structure genomics,	99.23
2pjd_A	343	Ribosomal RNA small subunit methyltransferase C; g	99.23
3giw_A	277	Protein of unknown function DUF574; rossmann-fold	99.23
3m4x_A	456	NOL1/NOP2/SUN family protein; mtase domain, PUA do	99.22
1r18_A	227	Protein-L-isoaspartate(D-aspartate)-O-methyltrans;	99.21
2yxl_A	450	PH0851 protein, 450AA long hypothetical FMU protei	99.19
2cmg_A	262	Spermidine synthase; transferase, putrescine amino	99.19
2frx_A	479	Hypothetical protein YEBU; rossmann-type S-adenosy	99.18
1vlm_A	219	SAM-dependent methyltransferase; possible histamin	99.18
4e2x_A	416	TCAB9; kijanose, tetronitrose, tetradeoxy sugar, s	99.18
3m6w_A	464	RRNA methylase; rRNA methyltransferase, 5-methylcy	99.18
2yx1_A	336	Hypothetical protein MJ0883; methyl transferase, t	99.18
1wy7_A	207	Hypothetical protein PH1948; seven-stranded beta s	99.18
3k6r_A	278	Putative transferase PH0793; structural genomics,	99.17
4dmg_A	393	Putative uncharacterized protein TTHA1493; rRNA, m	99.17
2as0_A	396	Hypothetical protein PH1915; RNA methyltransferase	99.17
4azs_A	569	Methyltransferase WBDD; kinase; HET: AMP SAM; 2.15	99.16
1ej0_A	180	FTSJ; methyltransferase, adoMet, adenosyl methioni	99.15
3tm4_A	373	TRNA (guanine N2-)-methyltransferase TRM14; rossma	99.15
1sqg_A	429	SUN protein, FMU protein; rossmann-fold, mixed bet	99.14
3c0k_A	396	UPF0064 protein YCCW; PUA domain, adoMet dependent	99.14
3frh_A	253	16S rRNA methylase; methyltransferase domain, heli	99.13
3cc8_A	230	Putative methyltransferase; structural genomics, j	99.13
3bt7_A	369	TRNA (uracil-5-)-methyltransferase; methyluridine,	99.12
3reo_A	368	(ISO)eugenol O-methyltransferase; directed evoluti	99.12
3p9c_A	364	Caffeic acid O-methyltransferase; S-adenosylmethio	99.11
3v97_A	703	Ribosomal RNA large subunit methyltransferase L; Y	99.1
1zq9_A	285	Probable dimethyladenosine transferase; SGC, struc	99.1
3lcv_B	281	Sisomicin-gentamicin resistance methylase SGM; ant	99.1
2plw_A	201	Ribosomal RNA methyltransferase, putative; malaria	99.1
1wxx_A	382	TT1595, hypothetical protein TTHA1280; thermus the	99.09
1fp1_D	372	Isoliquiritigenin 2'-O-methyltransferase; protein-	99.08
3q87_B	170	N6 adenine specific DNA methylase; SAM-methyltrans	99.08
1fp2_A	352	Isoflavone O-methyltransferase; protein-product co	99.07
2zfu_A	215	Nucleomethylin, cerebral protein 1; nucleolar prot	99.06
2qfm_A	364	Spermine synthase; spermidine aminopropyltransfera	99.06
2jjq_A	425	Uncharacterized RNA methyltransferase pyrab10780;	99.04
3opn_A	232	Putative hemolysin; structural genomics, PSI-2, pr	99.04
3o4f_A	294	Spermidine synthase; aminopropyltransferase, polya	99.03
2dul_A	378	N(2),N(2)-dimethylguanosine tRNA methyltransferas;	99.03
2b9e_A	309	NOL1/NOP2/SUN domain family, member 5 isoform 2; m	99.02
2h1r_A	299	Dimethyladenosine transferase, putative; SGC toron	99.02
2ld4_A	176	Anamorsin; methyltransferase-like fold, alpha/beta	99.01
1ne2_A	200	Hypothetical protein TA1320; structural genomics,	99.01
3axs_A	392	Probable N(2),N(2)-dimethylguanosine tRNA methylt	99.0
3dou_A	191	Ribosomal RNA large subunit methyltransferase J; c	98.99
3hp7_A	291	Hemolysin, putative; structural genomics, APC64019	98.97
2xyq_A	290	Putative 2'-O-methyl transferase; transferase-vira	98.96
2nyu_A	196	Putative ribosomal RNA methyltransferase 2; SAM, s	98.95
2wk1_A	282	NOVP; transferase, O-methyltransferase, novobiocin	98.95
1zg3_A	358	Isoflavanone 4'-O-methyltransferase; rossman fold,	98.95
1uwv_A	433	23S rRNA (uracil-5-)-methyltransferase RUMA; RNA m	98.94
3ll7_A	410	Putative methyltransferase; methytransferase, stru	98.93
1m6y_A	301	S-adenosyl-methyltransferase MRAW; SAM-dependent m	98.88
3gru_A	295	Dimethyladenosine transferase; rossman fold, ribos	98.85
2r6z_A	258	UPF0341 protein in RSP 3' region; alpha-beta prote	98.85
2qy6_A	257	UPF0209 protein YFCK; structural genomics, unknown	98.85
2oxt_A	265	Nucleoside-2'-O-methyltransferase; flavivirus, vir	98.82
2f8l_A	344	Hypothetical protein LMO1582; structural genomics,	98.81
3k0b_A	393	Predicted N6-adenine-specific DNA methylase; methy	98.79
2wa2_A	276	Non-structural protein 5; transferase, S-adenosyl-	98.79
2p41_A	305	Type II methyltransferase; vizier, viral enzymes i	98.76
3ldg_A	384	Putative uncharacterized protein SMU.472; YPSC, me	98.76
3ldu_A	385	Putative methylase; structural genomics, PSI-2, pr	98.73
1qam_A	244	ERMC' methyltransferase; rRNA methyltransferase ER	98.7
3c6k_A	381	Spermine synthase; spermidine aminopropyltransfera	98.7
3tqs_A	255	Ribosomal RNA small subunit methyltransferase A; p	98.69
1yub_A	245	Ermam, rRNA methyltransferase; MLS antibiotics; NM	98.64
2ih2_A	421	Modification methylase TAQI; DNA, DNA methyltransf	98.62
3fut_A	271	Dimethyladenosine transferase; methyltransferase,	98.62
2okc_A	445	Type I restriction enzyme stysji M protein; NP_813	98.56
2oyr_A	258	UPF0341 protein YHIQ; alpha-beta protein, structur	98.52
3ua3_A	745	Protein arginine N-methyltransferase 5; TIM-barrel	98.44
3ftd_A	249	Dimethyladenosine transferase; KSGA, rossmann-like	98.43
3v97_A	703	Ribosomal RNA large subunit methyltransferase L; Y	98.43
4fzv_A	359	Putative methyltransferase NSUN4; mterf fold, meth	98.39
4gqb_A	637	Protein arginine N-methyltransferase 5; TIM barrel	98.38
1qyr_A	252	KSGA, high level kasugamycin resistance protein, S	98.36
3uzu_A	279	Ribosomal RNA small subunit methyltransferase A; s	98.35
2ar0_A	541	M.ecoki, type I restriction enzyme ecoki M protein	98.21
2k4m_A	153	TR8_protein, UPF0146 protein MTH_1000; alpha+beta,	98.2
3s2e_A	340	Zinc-containing alcohol dehydrogenase superfamily;	98.06
1pl8_A	356	Human sorbitol dehydrogenase; NAD, oxidoreductase;	98.0
1wg8_A	285	Predicted S-adenosylmethionine-dependent methyltra	98.0
4ej6_A	370	Putative zinc-binding dehydrogenase; structural ge	97.98
2h6e_A	344	ADH-4, D-arabinose 1-dehydrogenase; rossman fold,	97.97
3fpc_A	352	NADP-dependent alcohol dehydrogenase; oxydoreducta	97.95
3two_A	348	Mannitol dehydrogenase; cinnamyl-alcohol dehydroge	97.94
3m6i_A	363	L-arabinitol 4-dehydrogenase; medium chain dehydro	97.91
1kol_A	398	Formaldehyde dehydrogenase; oxidoreductase; HET: N	97.88
3lkd_A	542	Type I restriction-modification system methyltrans	97.87
1f8f_A	371	Benzyl alcohol dehydrogenase; rossmann fold, oxido	97.87
1uuf_A	369	YAHK, zinc-type alcohol dehydrogenase-like protein	97.85
1rjw_A	339	ADH-HT, alcohol dehydrogenase; oxidoreductase, NAD	97.85
2dph_A	398	Formaldehyde dismutase; dismutation of aldehydes,	97.83
1e3j_A	352	NADP(H)-dependent ketose reductase; oxidoreductase	97.83
4eez_A	348	Alcohol dehydrogenase 1; site-saturation mutagenes	97.8
3khk_A	544	Type I restriction-modification system methylation	97.78
3jv7_A	345	ADH-A; dehydrogenase, nucleotide binding, rossmann	97.76
1vj0_A	380	Alcohol dehydrogenase, zinc-containing; TM0436, st	97.75
2vhw_A	377	Alanine dehydrogenase; NAD, secreted, oxidoreducta	97.72
3uog_A	363	Alcohol dehydrogenase; structural genomics, protei	97.69
2cf5_A	357	Atccad5, CAD, cinnamyl alcohol dehydrogenase; lign	97.68
1piw_A	360	Hypothetical zinc-type alcohol dehydrogenase- like	97.67
1e3i_A	376	Alcohol dehydrogenase, class II; HET: NAD; 2.08A {	97.67
3ip1_A	404	Alcohol dehydrogenase, zinc-containing; structural	97.66
1yqd_A	366	Sinapyl alcohol dehydrogenase; lignin, monolignol,	97.65
3fwz_A	140	Inner membrane protein YBAL; TRKA-N domain, E.coli	97.65
2dpo_A	319	L-gulonate 3-dehydrogenase; structural genomics, N	97.65
3tqh_A	321	Quinone oxidoreductase; HET: NDP; 2.44A {Coxiella	97.64
3goh_A	315	Alcohol dehydrogenase, zinc-containing; NP_718042.	97.64
3uko_A	378	Alcohol dehydrogenase class-3; alcohol dehydrogena	97.64
1p0f_A	373	NADP-dependent alcohol dehydrogenase; ADH topology	97.64
2c0c_A	362	Zinc binding alcohol dehydrogenase, domain contain	97.64
1pqw_A	198	Polyketide synthase; rossmann fold, dimer, structu	97.64
3p2y_A	381	Alanine dehydrogenase/pyridine nucleotide transhy;	97.63
4dio_A	405	NAD(P) transhydrogenase subunit alpha PART 1; stru	97.63
3tos_A	257	CALS11; methyltransferase, calicheamicin, structur	97.61
1cdo_A	374	Alcohol dehydrogenase; oxidoreductase, oxidoreduct	97.61
4a2c_A	346	Galactitol-1-phosphate 5-dehydrogenase; oxidoreduc	97.6
4dvj_A	363	Putative zinc-dependent alcohol dehydrogenase Pro;	97.6
3s1s_A	878	Restriction endonuclease bpusi; PD--(D/E)XK cataly	97.6
2d8a_A	348	PH0655, probable L-threonine 3-dehydrogenase; pyro	97.59
3qwb_A	334	Probable quinone oxidoreductase; rossmann fold, qu	97.58
4auk_A	375	Ribosomal RNA large subunit methyltransferase M; Y	97.56
4b7c_A	336	Probable oxidoreductase; NADP cofactor, rossmann f	97.56
3jyn_A	325	Quinone oxidoreductase; rossmann fold, protein-NAD	97.56
2jhf_A	374	Alcohol dehydrogenase E chain; oxidoreductase, met	97.54
4eye_A	342	Probable oxidoreductase; structural genomics, niai	97.53
1pjc_A	361	Protein (L-alanine dehydrogenase); oxidoreductase,	97.52
2fzw_A	373	Alcohol dehydrogenase class III CHI chain; S-nitro	97.51
3gms_A	340	Putative NADPH:quinone reductase; structural genom	97.5
1f0y_A	302	HCDH, L-3-hydroxyacyl-COA dehydrogenase; abortive	97.49
2b5w_A	357	Glucose dehydrogenase; nucleotide binding motif, o	97.48
1iz0_A	302	Quinone oxidoreductase; APO-enzyme, riken structur	97.48
3c85_A	183	Putative glutathione-regulated potassium-efflux S	97.44
2hcy_A	347	Alcohol dehydrogenase 1; tetramer of asymmetric di	97.43
2eih_A	343	Alcohol dehydrogenase; zinc ION binding protein, s	97.43
4dup_A	353	Quinone oxidoreductase; PSI-biology, structural ge	97.43
3gaz_A	343	Alcohol dehydrogenase superfamily protein; oxidore	97.43
3tka_A	347	Ribosomal RNA small subunit methyltransferase H; H	97.42
3fbg_A	346	Putative arginate lyase; structural genomics, unkn	97.42
2eez_A	369	Alanine dehydrogenase; TTHA0216, structural genomi	97.39
4e12_A	283	Diketoreductase; oxidoreductase, NADH; HET: 1PE; 1	97.38
3nx4_A	324	Putative oxidoreductase; csgid, structural genomic	97.38
2vn8_A	375	Reticulon-4-interacting protein 1; mitochondrion,	97.38
2j3h_A	345	NADP-dependent oxidoreductase P1; double bond redu	97.38
1jvb_A	347	NAD(H)-dependent alcohol dehydrogenase; archaeon,	97.38
1v3u_A	333	Leukotriene B4 12- hydroxydehydrogenase/prostaglan	97.35
3krt_A	456	Crotonyl COA reductase; structural genomics, prote	97.33
1gu7_A	364	Enoyl-[acyl-carrier-protein] reductase [NADPH, B-s	97.32
4a0s_A	447	Octenoyl-COA reductase/carboxylase; oxidoreductase	97.32
3evf_A	277	RNA-directed RNA polymerase NS5; NS5 methyltransfe	97.32
1xa0_A	328	Putative NADPH dependent oxidoreductases; structur	97.31
2g1u_A	155	Hypothetical protein TM1088A; structural genomics,	97.31
2j8z_A	354	Quinone oxidoreductase; medium-chain dehydrogenase	97.28
2dq4_A	343	L-threonine 3-dehydrogenase; NAD-dependent, oxidor	97.27
2zig_A	297	TTHA0409, putative modification methylase; methylt	97.27
1wly_A	333	CAAR, 2-haloacrylate reductase; NADPH-dependent ox	97.27
3ado_A	319	Lambda-crystallin; L-gulonate 3-dehydrogenase, str	97.25
1yb5_A	351	Quinone oxidoreductase; medium-chain dehydrogenase	97.23
1qor_A	327	Quinone oxidoreductase; HET: NAP; 2.20A {Escherich	97.19
1lss_A	140	TRK system potassium uptake protein TRKA homolog;	97.18
1zcj_A	463	Peroxisomal bifunctional enzyme; peroxisomal multi	97.18
3mog_A	483	Probable 3-hydroxybutyryl-COA dehydrogenase; struc	97.18
3k6j_A	460	Protein F01G10.3, confirmed by transcript evidenc;	97.18
1l7d_A	384	Nicotinamide nucleotide transhydrogenase, subunit	97.16
1ldn_A	316	L-lactate dehydrogenase; oxidoreductase(CHOH(D)-NA	97.15
3gcz_A	282	Polyprotein; flavivirus, RNA capping, methyltransf	97.15
3ggo_A	314	Prephenate dehydrogenase; TYRA, HPP, NADH, alpha-b	97.14
1x13_A	401	NAD(P) transhydrogenase subunit alpha; NAD(H)-bind	97.14
2cdc_A	366	Glucose dehydrogenase glucose 1-dehydrogenase, DHG	97.13
2zb4_A	357	Prostaglandin reductase 2; rossmann fold, alternat	97.13
3pi7_A	349	NADH oxidoreductase; groes-like fold, NAD(P)-bindi	97.13
1h2b_A	359	Alcohol dehydrogenase; oxidoreductase, archaea, hy	97.13
1tt7_A	330	YHFP; alcohol dehydrogenase, Zn-dependent, NAD, st	97.13
3llv_A	141	Exopolyphosphatase-related protein; NAD(P)-binding	97.11
1id1_A	153	Putative potassium channel protein; RCK domain, E.	97.09
1zsy_A	357	Mitochondrial 2-enoyl thioester reductase; medium-	97.07
3ce6_A	494	Adenosylhomocysteinase; protein-substrate complex,	97.05
2uyo_A	310	Hypothetical protein ML2640; putative methyltransf	97.03
3gqv_A	371	Enoyl reductase; medium-chain reductase (MDR super	96.95
3l9w_A	413	Glutathione-regulated potassium-efflux system Pro	96.86
2g5c_A	281	Prephenate dehydrogenase; TYRA, oxidoreductase; HE	96.8
3lkz_A	321	Non-structural protein 5; flavivirus, methyltransf	96.8
2v6b_A	304	L-LDH, L-lactate dehydrogenase; oxidoreductase, ra	96.78
2f1k_A	279	Prephenate dehydrogenase; tyrosine synthesis, X-RA	96.77
3gg2_A	450	Sugar dehydrogenase, UDP-glucose/GDP-mannose dehyd	96.76
1zej_A	293	HBD-9, 3-hydroxyacyl-COA dehydrogenase; structural	96.74
2ew2_A	316	2-dehydropantoate 2-reductase, putative; alpha-str	96.72
3l4b_C	218	TRKA K+ channel protien TM1088B; potassium channel	96.69
3zwc_A	742	Peroxisomal bifunctional enzyme; beta oxidation pa	96.68
3pvc_A	689	TRNA 5-methylaminomethyl-2-thiouridine biosynthes	96.66
2y0c_A	478	BCEC, UDP-glucose dehydrogenase; oxidoreductase, c	96.64
1lld_A	319	L-lactate dehydrogenase; oxidoreductase(CHOH (D)-N	96.63
3p8z_A	267	Mtase, non-structural protein 5; methyltransferase	96.62
3vyw_A	308	MNMC2; tRNA wobble uridine, modification enzyme, g	96.62
3c24_A	286	Putative oxidoreductase; YP_511008.1, structural g	96.62
1ez4_A	318	Lactate dehydrogenase; rossmann fold, oxidoreducta	96.59
3g79_A	478	NDP-N-acetyl-D-galactosaminuronic acid dehydrogen;	96.59
4a7p_A	446	UDP-glucose dehydrogenase; oxidoreductase, carbohy	96.59
3d0o_A	317	L-LDH 1, L-lactate dehydrogenase 1; cytoplasm, gly	96.56
2zqz_A	326	L-LDH, L-lactate dehydrogenase; oxidoreductase, ro	96.56
2wtb_A	725	MFP2, fatty acid multifunctional protein (ATMFP2);	96.54
3b1f_A	290	Putative prephenate dehydrogenase; enzyme, 4-hydro	96.53
4e21_A	358	6-phosphogluconate dehydrogenase (decarboxylating;	96.53
1y6j_A	318	L-lactate dehydrogenase; southeast collaboratory f	96.52
2efj_A	384	3,7-dimethylxanthine methyltransferase; SAM-depend	96.52
4a27_A	349	Synaptic vesicle membrane protein VAT-1 homolog-L;	96.5
1mv8_A	436	GMD, GDP-mannose 6-dehydrogenase; rossman fold, do	96.49
1pzg_A	331	LDH, lactate dehydrogenase; apicomplexa, APAD, tet	96.48
2rir_A	300	Dipicolinate synthase, A chain; structural genomic	96.48
1i4w_A	353	Mitochondrial replication protein MTF1; mitochondr	96.47
2xxj_A	310	L-LDH, L-lactate dehydrogenase; oxidoreductase, hy	96.47
3pid_A	432	UDP-glucose 6-dehydrogenase; rossmann fold, oxidor	96.43
2hjr_A	328	Malate dehydrogenase; malaria, structural genomics	96.43
3d4o_A	293	Dipicolinate synthase subunit A; NP_243269.1, stru	96.42
1a5z_A	319	L-lactate dehydrogenase; oxidoreductase, glycolysi	96.37
2aef_A	234	Calcium-gated potassium channel MTHK; rossmann fol	96.37
3pqe_A	326	L-LDH, L-lactate dehydrogenase; FBP, oxidoreductas	96.36
3k96_A	356	Glycerol-3-phosphate dehydrogenase [NAD(P)+]; GPSA	96.35
1t2d_A	322	LDH-P, L-lactate dehydrogenase; ternary complex, o	96.34
3b5i_A	374	S-adenosyl-L-methionine:salicylic acid carboxyl me	96.34
2i6t_A	303	Ubiquitin-conjugating enzyme E2-like isoform A; L-	96.31
1wdk_A	715	Fatty oxidation complex alpha subunit; alpha2BETA2	96.31
4ezb_A	317	Uncharacterized conserved protein; structural geno	96.28
4gwg_A	484	6-phosphogluconate dehydrogenase, decarboxylating;	96.27
3iup_A	379	Putative NADPH:quinone oxidoreductase; YP_296108.1	96.27
2hmt_A	144	YUAA protein; RCK, KTN, KTR, KTRA, ktrab, membrane	96.23
3ojo_A	431	CAP5O; rossmann fold, complex with cofactor NAD an	96.23
3ic5_A	118	Putative saccharopine dehydrogenase; structural ge	96.19
1bg6_A	359	N-(1-D-carboxylethyl)-L-norvaline dehydrogenase; L	96.18
2ewd_A	317	Lactate dehydrogenase,; protein-substrate_cofactor	96.18
3r24_A	344	NSP16, 2'-O-methyl transferase; methyltransferase,	96.14
1g60_A	260	Adenine-specific methyltransferase MBOIIA; structu	96.12
3lk7_A	451	UDP-N-acetylmuramoylalanine--D-glutamate ligase; a	96.1
2px2_A	269	Genome polyprotein [contains: capsid protein C (co	96.07
3tri_A	280	Pyrroline-5-carboxylate reductase; amino acid bios	96.05
2cvz_A	289	Dehydrogenase, 3-hydroxyisobutyrate dehydrogenase;	96.05
3gvp_A	435	Adenosylhomocysteinase 3; protein CO-factor comple	96.04
3ktd_A	341	Prephenate dehydrogenase; structural genomics, joi	96.04
3vtf_A	444	UDP-glucose 6-dehydrogenase; two discrete alpha/be	96.03
2h78_A	302	Hibadh, 3-hydroxyisobutyrate dehydrogenase; APC601	96.03
3eld_A	300	Methyltransferase; flavivirus, RNA capping, guanyl	96.03
1m6e_X	359	S-adenosyl-L-methionnine:salicylic acid carboxyl m	96.02
3g0o_A	303	3-hydroxyisobutyrate dehydrogenase; NAD(P), valine	96.01
2o3j_A	481	UDP-glucose 6-dehydrogenase; structural genomics,	96.01
3n58_A	464	Adenosylhomocysteinase; ssgcid, hydrolase, structu	96.0
4dll_A	320	2-hydroxy-3-oxopropionate reductase; structural ge	95.98
2zyd_A	480	6-phosphogluconate dehydrogenase, decarboxylating;	95.95
1hyh_A	309	L-hicdh, L-2-hydroxyisocaproate dehydrogenase; L-2	95.92
3gt0_A	247	Pyrroline-5-carboxylate reductase; structural geno	95.92
3d1l_A	266	Putative NADP oxidoreductase BF3122; structural ge	95.89
1oju_A	294	MDH, malate dehydrogenase; hyperthermophilic, oxid	95.88
3vku_A	326	L-LDH, L-lactate dehydrogenase; rossmann fold, NAD	95.87
1dlj_A	402	UDP-glucose dehydrogenase; rossmann fold, ternary	95.84
3ps9_A	676	TRNA 5-methylaminomethyl-2-thiouridine biosynthes	95.81
3ldh_A	330	Lactate dehydrogenase; oxidoreductase, CHOH donor,	95.79
3ufb_A	530	Type I restriction-modification system methyltran	95.79
3qha_A	296	Putative oxidoreductase; seattle structural genomi	95.78
1np3_A	338	Ketol-acid reductoisomerase; A DEEP figure-OF-eigh	95.76
1obb_A	480	Maltase, alpha-glucosidase; glycosidase, sulfinic	95.75
1rjd_A	334	PPM1P, carboxy methyl transferase for protein phos	95.74
2q3e_A	467	UDP-glucose 6-dehydrogenase; hexamer, structural g	95.73
1vpd_A	299	Tartronate semialdehyde reductase; structural geno	95.7
3hwr_A	318	2-dehydropantoate 2-reductase; YP_299159.1, PANE/A	95.7
3oig_A	266	Enoyl-[acyl-carrier-protein] reductase [NADH]; fat	95.5
2iz1_A	474	6-phosphogluconate dehydrogenase, decarboxylating;	95.48
2pv7_A	298	T-protein [includes: chorismate mutase (EC 5.4.99	95.41
1pgj_A	478	6PGDH, 6-PGDH, 6-phosphogluconate dehydrogenase; o	95.4
3pef_A	287	6-phosphogluconate dehydrogenase, NAD-binding; gam	95.34
3pxx_A	287	Carveol dehydrogenase; structural genomics, seattl	95.31
3hn2_A	312	2-dehydropantoate 2-reductase; PSI-2, NYSGXRC, str	95.29
1x0v_A	354	GPD-C, GPDH-C, glycerol-3-phosphate dehydrogenase	95.24
2d4a_B	308	Malate dehydrogenase; archaea, hyperthermophIle, o	95.24
1wma_A	276	Carbonyl reductase [NADPH] 1; oxidoreductase; HET:	95.22
1ur5_A	309	Malate dehydrogenase; oxidoreductase, tricarboxyli	95.21
3pdu_A	287	3-hydroxyisobutyrate dehydrogenase family protein;	95.19
1jw9_B	249	Molybdopterin biosynthesis MOEB protein; MOEB: mod	95.16
1guz_A	310	Malate dehydrogenase; oxidoreductase, tricarboxyli	95.16
1smk_A	326	Malate dehydrogenase, glyoxysomal; tricarboxylic c	95.15
3h9u_A	436	Adenosylhomocysteinase; NAD CO-factor complex, str	95.13
1txg_A	335	Glycerol-3-phosphate dehydrogenase [NAD(P)+]; oxid	95.11
3cky_A	301	2-hydroxymethyl glutarate dehydrogenase; rossmann	95.1
1u8x_X	472	Maltose-6'-phosphate glucosidase; structural genom	95.09
2pgd_A	482	6-phosphogluconate dehydrogenase; oxidoreductase (	95.09
2vz8_A	2512	Fatty acid synthase; transferase, phosphopantethei	95.05
3o38_A	266	Short chain dehydrogenase; tuberculosis, ortholog	95.05
3dfz_A	223	SIRC, precorrin-2 dehydrogenase; NAD dehydrogenase	95.04
3qsg_A	312	NAD-binding phosphogluconate dehydrogenase-like P;	95.02
1evy_A	366	Glycerol-3-phosphate dehydrogenase; rossmann fold,	95.0
2izz_A	322	Pyrroline-5-carboxylate reductase 1; amino-acid bi	94.98
2oo3_A	283	Protein involved in catabolism of external DNA; st	94.95
1mld_A	314	Malate dehydrogenase; oxidoreductase(NAD(A)-CHOH(D	94.93
2raf_A	209	Putative dinucleotide-binding oxidoreductase; NP_7	94.92
3i83_A	320	2-dehydropantoate 2-reductase; structural genomics	94.9
2p4q_A	497	6-phosphogluconate dehydrogenase, decarboxylating;	94.88
3qiv_A	253	Short-chain dehydrogenase or 3-oxoacyl-[acyl-CARR	94.87
3gvi_A	324	Malate dehydrogenase; NAD, oxidoreductase, tricarb	94.87
3c7a_A	404	Octopine dehydrogenase; L) stereospecific opine de	94.86

>3fpf_A Mtnas, putative uncharacterized protein; thermonicotianamine, nicotianamine, biosynthetic protein; HET: TNA MTA; 1.66A {Methanothermobacter thermautotrophicusorganism_taxid} PDB: 3fpe_A* 3fph_A* 3fpg_A* 3fpj_A* 3o31_A*

Probab=100.00  E-value=1.6e-52  Score=387.45  Aligned_cols=253  Identities=21%  Similarity=0.333  Sum_probs=231.7

Q ss_pred             HHHHHHHHHHHHhccCCCCCChhhHHHHHHHHHHh---hc----CCcccccccCchhHHHHHHHHHHHHHHHhHhhhHHH
Q 042119           17 LLIASVMQIHASISKLESLKPSKQVNSIFSRLVKL---CT----IPSSIDITALPQEVQKMRESLIVLCGRAEGLLELEF   89 (286)
Q Consensus        17 ~~i~~i~~~~~~i~~l~~l~p~~~vn~lf~~Lv~~---c~----~~~~~~~~~~~~~~~~l~~~l~~l~~~~e~~lE~~~   89 (286)
                      ....+|.++|+.|+++++|+|++.||+||+.|++|   |.    .+...+.+..+++++++++.++++|+++++.+|.+|
T Consensus         5 ~~~~~i~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~v~~~~~~~vl~~~~~~~l~~~~~~~y~~~~~~~E~~w   84 (298)
T 3fpf_A            5 IYWDKIKRIASRLEGMNYHFDEMDTSGVMPLLDEIEEIAHDSTIDFESAKHILDDAEMNHALSLIRKFYVNLGMKLEMEK   84 (298)
T ss_dssp             HHHHHHHHHHHHHGGGTTCGGGCCTTTTHHHHHHHHHHHTCTTSCHHHHHHHHHCGGGHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhcCCCCCccccHHHHHHHHHHHHHhcccCCcCHHHHHHHhcChhHHHHHHHHHHHHHHHHHHHHHHH
Confidence            35789999999999999999999999999966665   44    222344445678999999999999999999999999


Q ss_pred             HHHhcCCCCcccccccCcCccchhhhhHHHHHHHHhcCCCCCCEEEEeccCCChhhHHHHHhhcCCCcEEEEEeCChHHH
Q 042119           90 ATFLTKIPQPLNNLSLFPYYGNYVKLSKLEYTILSENGVVQPKKVAFVGSGPMPLTSIIMAKHHLTSTHFDNFDIDEAAN  169 (286)
Q Consensus        90 A~~l~~~~~p~~~L~~fpy~~ny~~l~~~E~~~l~~~~~~~~~~VL~IG~G~lp~tai~lA~~~~~g~~V~~iDid~~ai  169 (286)
                      |++++++++||++|..||||+||+++++.|+.+   ..++++++||+|||||+|+|++.+|+  .+|++|+|||+|++++
T Consensus        85 a~~l~~~~~p~~~l~~fpy~~~~~~l~~~E~~l---a~l~~g~rVLDIGcG~G~~ta~~lA~--~~ga~V~gIDis~~~l  159 (298)
T 3fpf_A           85 AQEVIESDSPWETLRSFYFYPRYLELLKNEAAL---GRFRRGERAVFIGGGPLPLTGILLSH--VYGMRVNVVEIEPDIA  159 (298)
T ss_dssp             HHHHHHCSSHHHHHHTSTTHHHHHHHHHHHHHH---TTCCTTCEEEEECCCSSCHHHHHHHH--TTCCEEEEEESSHHHH
T ss_pred             HHHHhccCChHHhhccCCCcccHHHHHHHHHHH---cCCCCcCEEEEECCCccHHHHHHHHH--ccCCEEEEEECCHHHH
Confidence            999999999999999999999999999999874   36789999999999999999999998  5899999999999999


Q ss_pred             HHHHHHHHhcCCCCCCeEEEEccccchhhcCCCcceeehhhhccCChhHHHHHHHHHHhhccCCcEEEEeecCcceeeec
Q 042119          170 DVARSIVASDAEFEGRMKFLTRDIMEVKEQLGEYDCIFLAALVGMSKEEKLTILGHIRKYMKDGGILLVRSAKGARAFLY  249 (286)
Q Consensus       170 ~~Ar~~~~~~g~l~~~i~f~~~D~~~~~~~l~~fD~V~~aalvg~~~~~k~~vl~~l~~~l~pgg~lv~r~~~g~r~~ly  249 (286)
                      +.||+++++.| + ++++|+++|+.+++  .+.||+||+++++    ++|.++++++.+.|||||+|++++.+|+|+++|
T Consensus       160 ~~Ar~~~~~~g-l-~~v~~v~gDa~~l~--d~~FDvV~~~a~~----~d~~~~l~el~r~LkPGG~Lvv~~~~~~r~~l~  231 (298)
T 3fpf_A          160 ELSRKVIEGLG-V-DGVNVITGDETVID--GLEFDVLMVAALA----EPKRRVFRNIHRYVDTETRIIYRTYTGMRAILY  231 (298)
T ss_dssp             HHHHHHHHHHT-C-CSEEEEESCGGGGG--GCCCSEEEECTTC----SCHHHHHHHHHHHCCTTCEEEEEECCGGGGGSS
T ss_pred             HHHHHHHHhcC-C-CCeEEEECchhhCC--CCCcCEEEECCCc----cCHHHHHHHHHHHcCCCcEEEEEcCcchhhhcc
Confidence            99999999999 6 89999999998875  3689999988775    689999999999999999999999999999999


Q ss_pred             ccCCcccccCcEEEEEecCcccceeeeEEEeec
Q 042119          250 PVVVEHDLLDFEVLSAVHPNDDVINSVVLVRNS  282 (286)
Q Consensus       250 p~v~~~~l~gf~~~~~~~P~~~vinsvi~~r~~  282 (286)
                      |.+++.++.||+.+.+.||.++|+||||+|||.
T Consensus       232 ~~v~~~~~~gf~~~~~~~p~~~v~N~vv~a~k~  264 (298)
T 3fpf_A          232 APVSDDDITGFRRAGVVLPSGKVNNTSVLVFKC  264 (298)
T ss_dssp             CCCCTGGGTTEEEEEEECCCTTCCCEEEEEEEC
T ss_pred             ccCChhhhhhhhheeEECCCCCcCcEEEEEEcc
Confidence            999999889999999999999999999999994

>4gek_A TRNA (CMO5U34)-methyltransferase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, rossmann fold; HET: GEK; 1.50A {Escherichia coli} PDB: 1im8_A*

Probab=99.74  E-value=1.3e-17  Score=150.81  Aligned_cols=126  Identities=14%  Similarity=0.192  Sum_probs=99.8

Q ss_pred             cCccchhhhhHHHHHHHHhcCCCCCCEEEEeccCCChhhHHHHHhhc-CCCcEEEEEeCChHHHHHHHHHHHhcCCCCCC
Q 042119          107 PYYGNYVKLSKLEYTILSENGVVQPKKVAFVGSGPMPLTSIIMAKHH-LTSTHFDNFDIDEAANDVARSIVASDAEFEGR  185 (286)
Q Consensus       107 py~~ny~~l~~~E~~~l~~~~~~~~~~VL~IG~G~lp~tai~lA~~~-~~g~~V~~iDid~~ai~~Ar~~~~~~g~l~~~  185 (286)
                      |+|++...++..   ++.+ .++++.+|||||||+ |..++.+|++. .+|++|+|||+|++|++.||+.++..| ...+
T Consensus        51 P~Y~~~~~~i~~---l~~~-~~~~~~~vLDlGcGt-G~~~~~la~~~~~~~~~v~gvD~s~~ml~~A~~~~~~~~-~~~~  124 (261)
T 4gek_A           51 PGYSNIISMIGM---LAER-FVQPGTQVYDLGCSL-GAATLSVRRNIHHDNCKIIAIDNSPAMIERCRRHIDAYK-APTP  124 (261)
T ss_dssp             TTHHHHHHHHHH---HHHH-HCCTTCEEEEETCTT-THHHHHHHHTCCSSSCEEEEEESCHHHHHHHHHHHHTSC-CSSC
T ss_pred             CCHHHHHHHHHH---HHHH-hCCCCCEEEEEeCCC-CHHHHHHHHhcCCCCCEEEEEECCHHHHHHHHHHHHhhc-cCce
Confidence            676665554432   2222 357889999999996 66677788742 368999999999999999999999988 6789


Q ss_pred             eEEEEccccchhhcCCCcceeehhhhc-cCChhHHHHHHHHHHhhccCCcEEEEee
Q 042119          186 MKFLTRDIMEVKEQLGEYDCIFLAALV-GMSKEEKLTILGHIRKYMKDGGILLVRS  240 (286)
Q Consensus       186 i~f~~~D~~~~~~~l~~fD~V~~aalv-g~~~~~k~~vl~~l~~~l~pgg~lv~r~  240 (286)
                      |+|+++|+.+++.  ++||+|+..... ..+.+++..+|+++++.|||||++++.+
T Consensus       125 v~~~~~D~~~~~~--~~~d~v~~~~~l~~~~~~~~~~~l~~i~~~LkpGG~lii~e  178 (261)
T 4gek_A          125 VDVIEGDIRDIAI--ENASMVVLNFTLQFLEPSERQALLDKIYQGLNPGGALVLSE  178 (261)
T ss_dssp             EEEEESCTTTCCC--CSEEEEEEESCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred             EEEeecccccccc--cccccceeeeeeeecCchhHhHHHHHHHHHcCCCcEEEEEe
Confidence            9999999987653  579998765433 4466788899999999999999999864

>2xvm_A Tellurite resistance protein TEHB; antibiotic resistance, transferase; HET: SAH; 1.48A {Escherichia coli} PDB: 2xva_A* 4dq0_A* 2i6g_A*

Probab=99.67  E-value=7.9e-16  Score=130.19  Aligned_cols=107  Identities=18%  Similarity=0.273  Sum_probs=88.9

Q ss_pred             CCCCCCEEEEeccCCChhhHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEccccchhhcCCCccee
Q 042119          127 GVVQPKKVAFVGSGPMPLTSIIMAKHHLTSTHFDNFDIDEAANDVARSIVASDAEFEGRMKFLTRDIMEVKEQLGEYDCI  206 (286)
Q Consensus       127 ~~~~~~~VL~IG~G~lp~tai~lA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~g~l~~~i~f~~~D~~~~~~~l~~fD~V  206 (286)
                      ...++.+||+||||+ |..+..+++   .|.+|+++|+|+.+++.|++.+...+ + .+++++++|+.+.+. .+.||+|
T Consensus        29 ~~~~~~~vLdiG~G~-G~~~~~l~~---~~~~v~~vD~s~~~~~~a~~~~~~~~-~-~~~~~~~~d~~~~~~-~~~~D~v  101 (199)
T 2xvm_A           29 KVVKPGKTLDLGCGN-GRNSLYLAA---NGYDVDAWDKNAMSIANVERIKSIEN-L-DNLHTRVVDLNNLTF-DRQYDFI  101 (199)
T ss_dssp             TTSCSCEEEEETCTT-SHHHHHHHH---TTCEEEEEESCHHHHHHHHHHHHHHT-C-TTEEEEECCGGGCCC-CCCEEEE
T ss_pred             hccCCCeEEEEcCCC-CHHHHHHHH---CCCeEEEEECCHHHHHHHHHHHHhCC-C-CCcEEEEcchhhCCC-CCCceEE
Confidence            345778999999996 666788888   38899999999999999999999888 3 579999999988665 4679999


Q ss_pred             ehhhhc-cCChhHHHHHHHHHHhhccCCcEEEEee
Q 042119          207 FLAALV-GMSKEEKLTILGHIRKYMKDGGILLVRS  240 (286)
Q Consensus       207 ~~aalv-g~~~~~k~~vl~~l~~~l~pgg~lv~r~  240 (286)
                      +..... .++.++..++++++.+.|+|||.+++.+
T Consensus       102 ~~~~~l~~~~~~~~~~~l~~~~~~L~~gG~l~~~~  136 (199)
T 2xvm_A          102 LSTVVLMFLEAKTIPGLIANMQRCTKPGGYNLIVA  136 (199)
T ss_dssp             EEESCGGGSCGGGHHHHHHHHHHTEEEEEEEEEEE
T ss_pred             EEcchhhhCCHHHHHHHHHHHHHhcCCCeEEEEEE
Confidence            866443 4455678899999999999999987754

>3r3h_A O-methyltransferase, SAM-dependent; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.65A {Legionella pneumophila subsp}

Probab=99.65  E-value=1.1e-16  Score=142.70  Aligned_cols=107  Identities=18%  Similarity=0.201  Sum_probs=92.5

Q ss_pred             CCCCEEEEeccCCChhhHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEccccchhhcC------CC
Q 042119          129 VQPKKVAFVGSGPMPLTSIIMAKHHLTSTHFDNFDIDEAANDVARSIVASDAEFEGRMKFLTRDIMEVKEQL------GE  202 (286)
Q Consensus       129 ~~~~~VL~IG~G~lp~tai~lA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~g~l~~~i~f~~~D~~~~~~~l------~~  202 (286)
                      .++++||+||||+ |.+++++|+...++++|+++|+|+++++.|++.++..| +.++|+|+++|+.+....+      +.
T Consensus        59 ~~~~~VLDiG~G~-G~~t~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~g-~~~~i~~~~gda~~~l~~~~~~~~~~~  136 (242)
T 3r3h_A           59 TRAKKVLELGTFT-GYSALAMSLALPDDGQVITCDINEGWTKHAHPYWREAK-QEHKIKLRLGPALDTLHSLLNEGGEHQ  136 (242)
T ss_dssp             HTCSEEEEEESCC-SHHHHHHHHTSCTTCEEEEEECCCSSCCCSHHHHHHTT-CTTTEEEEESCHHHHHHHHHHHHCSSC
T ss_pred             cCcCEEEEeeCCc-CHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcC-CCCcEEEEEcCHHHHHHHHhhccCCCC
Confidence            4678999999995 88889999843348999999999999999999999999 7889999999998765543      68


Q ss_pred             cceeehhhhccCChhHHHHHHHHHHhhccCCcEEEEeec
Q 042119          203 YDCIFLAALVGMSKEEKLTILGHIRKYMKDGGILLVRSA  241 (286)
Q Consensus       203 fD~V~~aalvg~~~~~k~~vl~~l~~~l~pgg~lv~r~~  241 (286)
                      ||+||+++..    +....+++.+.+.|+|||++++.+.
T Consensus       137 fD~V~~d~~~----~~~~~~l~~~~~~LkpGG~lv~d~~  171 (242)
T 3r3h_A          137 FDFIFIDADK----TNYLNYYELALKLVTPKGLIAIDNI  171 (242)
T ss_dssp             EEEEEEESCG----GGHHHHHHHHHHHEEEEEEEEEECS
T ss_pred             EeEEEEcCCh----HHhHHHHHHHHHhcCCCeEEEEECC
Confidence            9999987643    6777899999999999999999763

>3dr5_A Putative O-methyltransferase; Q8NRD3, CGL1119, PF01596, CGR117, NESG, structural genomics, PSI-2, protein structure initiative; 2.25A {Corynebacterium glutamicum}

Probab=99.65  E-value=4.1e-16  Score=137.38  Aligned_cols=106  Identities=14%  Similarity=0.271  Sum_probs=91.6

Q ss_pred             CCCEEEEeccCCChhhHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCC-CCeEEEEccccchhhcC--CCccee
Q 042119          130 QPKKVAFVGSGPMPLTSIIMAKHHLTSTHFDNFDIDEAANDVARSIVASDAEFE-GRMKFLTRDIMEVKEQL--GEYDCI  206 (286)
Q Consensus       130 ~~~~VL~IG~G~lp~tai~lA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~g~l~-~~i~f~~~D~~~~~~~l--~~fD~V  206 (286)
                      ++.+||+|||| .|.+++++|++..++++|+++|+|+++++.|++.++..| +. ++++|+++|+.+....+  +.||+|
T Consensus        56 ~~~~vLdiG~G-~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g-~~~~~i~~~~gda~~~l~~~~~~~fD~V  133 (221)
T 3dr5_A           56 GSTGAIAITPA-AGLVGLYILNGLADNTTLTCIDPESEHQRQAKALFREAG-YSPSRVRFLLSRPLDVMSRLANDSYQLV  133 (221)
T ss_dssp             TCCEEEEESTT-HHHHHHHHHHHSCTTSEEEEECSCHHHHHHHHHHHHHTT-CCGGGEEEECSCHHHHGGGSCTTCEEEE
T ss_pred             CCCCEEEEcCC-chHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcC-CCcCcEEEEEcCHHHHHHHhcCCCcCeE
Confidence            34599999999 489999999853458999999999999999999999999 67 79999999998876554  579999


Q ss_pred             ehhhhccCChhHHHHHHHHHHhhccCCcEEEEeec
Q 042119          207 FLAALVGMSKEEKLTILGHIRKYMKDGGILLVRSA  241 (286)
Q Consensus       207 ~~aalvg~~~~~k~~vl~~l~~~l~pgg~lv~r~~  241 (286)
                      |+++..    ....++++.+.+.|+|||++++.+.
T Consensus       134 ~~d~~~----~~~~~~l~~~~~~LkpGG~lv~dn~  164 (221)
T 3dr5_A          134 FGQVSP----MDLKALVDAAWPLLRRGGALVLADA  164 (221)
T ss_dssp             EECCCT----TTHHHHHHHHHHHEEEEEEEEETTT
T ss_pred             EEcCcH----HHHHHHHHHHHHHcCCCcEEEEeCC
Confidence            987643    5667899999999999999999763

>3ocj_A Putative exported protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: PLM; 1.39A {Bordetella parapertussis}

Probab=99.64  E-value=9e-16  Score=140.28  Aligned_cols=111  Identities=18%  Similarity=0.180  Sum_probs=92.3

Q ss_pred             CCCCCCEEEEeccCCChhhHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEccccchhhcCCCccee
Q 042119          127 GVVQPKKVAFVGSGPMPLTSIIMAKHHLTSTHFDNFDIDEAANDVARSIVASDAEFEGRMKFLTRDIMEVKEQLGEYDCI  206 (286)
Q Consensus       127 ~~~~~~~VL~IG~G~lp~tai~lA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~g~l~~~i~f~~~D~~~~~~~l~~fD~V  206 (286)
                      .+.++.+|||||||+ |..++.+|.+..++++|+|+|+|+.+++.|++.+...| +.++++|+++|+.+++.+ +.||+|
T Consensus       115 ~l~~~~~vLDiGcG~-G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~-~~~~v~~~~~d~~~~~~~-~~fD~v  191 (305)
T 3ocj_A          115 HLRPGCVVASVPCGW-MSELLALDYSACPGVQLVGIDYDPEALDGATRLAAGHA-LAGQITLHRQDAWKLDTR-EGYDLL  191 (305)
T ss_dssp             HCCTTCEEEETTCTT-CHHHHTSCCTTCTTCEEEEEESCHHHHHHHHHHHTTST-TGGGEEEEECCGGGCCCC-SCEEEE
T ss_pred             hCCCCCEEEEecCCC-CHHHHHHHHhcCCCCeEEEEECCHHHHHHHHHHHHhcC-CCCceEEEECchhcCCcc-CCeEEE
Confidence            357889999999996 66677775324689999999999999999999999999 678899999999987766 789999


Q ss_pred             ehhhhc-cC-ChhHHHHHHHHHHhhccCCcEEEEee
Q 042119          207 FLAALV-GM-SKEEKLTILGHIRKYMKDGGILLVRS  240 (286)
Q Consensus       207 ~~aalv-g~-~~~~k~~vl~~l~~~l~pgg~lv~r~  240 (286)
                      +..... .. +.+...++++++.+.|+|||++++.+
T Consensus       192 ~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~  227 (305)
T 3ocj_A          192 TSNGLNIYEPDDARVTELYRRFWQALKPGGALVTSF  227 (305)
T ss_dssp             ECCSSGGGCCCHHHHHHHHHHHHHHEEEEEEEEEEC
T ss_pred             EECChhhhcCCHHHHHHHHHHHHHhcCCCeEEEEEe
Confidence            975533 33 34444568999999999999999976

>1pjz_A Thiopurine S-methyltransferase; polymorphism, S-adenosylmethionine, drug metabolism; NMR {Pseudomonas syringae PV} SCOP: c.66.1.36

Probab=99.63  E-value=4.6e-16  Score=134.64  Aligned_cols=108  Identities=13%  Similarity=0.160  Sum_probs=85.3

Q ss_pred             CCCCCCEEEEeccCCChhhHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcC------C----CCCCeEEEEccccch
Q 042119          127 GVVQPKKVAFVGSGPMPLTSIIMAKHHLTSTHFDNFDIDEAANDVARSIVASDA------E----FEGRMKFLTRDIMEV  196 (286)
Q Consensus       127 ~~~~~~~VL~IG~G~lp~tai~lA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~g------~----l~~~i~f~~~D~~~~  196 (286)
                      .+.++.+|||+|||+ |..+..||+   .|.+|+|+|+|++|++.|++..+..+      .    ...+++|+++|+.++
T Consensus        19 ~~~~~~~vLD~GCG~-G~~~~~la~---~g~~V~gvD~S~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~l   94 (203)
T 1pjz_A           19 NVVPGARVLVPLCGK-SQDMSWLSG---QGYHVVGAELSEAAVERYFTERGEQPHITSQGDFKVYAAPGIEIWCGDFFAL   94 (203)
T ss_dssp             CCCTTCEEEETTTCC-SHHHHHHHH---HCCEEEEEEECHHHHHHHHHHHCSCSEEEEETTEEEEECSSSEEEEECCSSS
T ss_pred             ccCCCCEEEEeCCCC-cHhHHHHHH---CCCeEEEEeCCHHHHHHHHHHccCCcccccccccccccCCccEEEECccccC
Confidence            456789999999996 677888998   48899999999999999998754310      0    025899999999887


Q ss_pred             hhcC-CCcceeehh-hhccCChhHHHHHHHHHHhhccCCcEEEE
Q 042119          197 KEQL-GEYDCIFLA-ALVGMSKEEKLTILGHIRKYMKDGGILLV  238 (286)
Q Consensus       197 ~~~l-~~fD~V~~a-alvg~~~~~k~~vl~~l~~~l~pgg~lv~  238 (286)
                      +... +.||+|+.. ++..++.+++.++++++++.|||||++++
T Consensus        95 ~~~~~~~fD~v~~~~~l~~l~~~~~~~~l~~~~r~LkpgG~~~l  138 (203)
T 1pjz_A           95 TARDIGHCAAFYDRAAMIALPADMRERYVQHLEALMPQACSGLL  138 (203)
T ss_dssp             THHHHHSEEEEEEESCGGGSCHHHHHHHHHHHHHHSCSEEEEEE
T ss_pred             CcccCCCEEEEEECcchhhCCHHHHHHHHHHHHHHcCCCcEEEE
Confidence            7653 689999853 23345667788899999999999998333

>3duw_A OMT, O-methyltransferase, putative; alternating of alpha and beta with complex SAH; HET: SAH; 1.20A {Bacillus cereus} PDB: 3dul_A*

Probab=99.63  E-value=1.7e-15  Score=131.54  Aligned_cols=106  Identities=17%  Similarity=0.276  Sum_probs=90.3

Q ss_pred             CCCCEEEEeccCCChhhHHHHHhhcCC-CcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEccccchhhcC-----CC
Q 042119          129 VQPKKVAFVGSGPMPLTSIIMAKHHLT-STHFDNFDIDEAANDVARSIVASDAEFEGRMKFLTRDIMEVKEQL-----GE  202 (286)
Q Consensus       129 ~~~~~VL~IG~G~lp~tai~lA~~~~~-g~~V~~iDid~~ai~~Ar~~~~~~g~l~~~i~f~~~D~~~~~~~l-----~~  202 (286)
                      .++.+||+||||+ |..++.+|++ ++ +++|+++|+|+++++.|++.++..| +.++++++++|+.+....+     +.
T Consensus        57 ~~~~~vLdiG~G~-G~~~~~la~~-~~~~~~v~~vD~~~~~~~~a~~~~~~~~-~~~~v~~~~~d~~~~~~~~~~~~~~~  133 (223)
T 3duw_A           57 QGARNILEIGTLG-GYSTIWLARG-LSSGGRVVTLEASEKHADIARSNIERAN-LNDRVEVRTGLALDSLQQIENEKYEP  133 (223)
T ss_dssp             HTCSEEEEECCTT-SHHHHHHHTT-CCSSCEEEEEESCHHHHHHHHHHHHHTT-CTTTEEEEESCHHHHHHHHHHTTCCC
T ss_pred             hCCCEEEEecCCc-cHHHHHHHHh-CCCCCEEEEEECCHHHHHHHHHHHHHcC-CCCcEEEEEcCHHHHHHHHHhcCCCC
Confidence            4689999999996 7788889983 55 8999999999999999999999999 7788999999997754332     46


Q ss_pred             cceeehhhhccCChhHHHHHHHHHHhhccCCcEEEEeec
Q 042119          203 YDCIFLAALVGMSKEEKLTILGHIRKYMKDGGILLVRSA  241 (286)
Q Consensus       203 fD~V~~aalvg~~~~~k~~vl~~l~~~l~pgg~lv~r~~  241 (286)
                      ||+||+++..    +....+++++.+.|+|||++++.+.
T Consensus       134 fD~v~~d~~~----~~~~~~l~~~~~~L~pgG~lv~~~~  168 (223)
T 3duw_A          134 FDFIFIDADK----QNNPAYFEWALKLSRPGTVIIGDNV  168 (223)
T ss_dssp             CSEEEECSCG----GGHHHHHHHHHHTCCTTCEEEEESC
T ss_pred             cCEEEEcCCc----HHHHHHHHHHHHhcCCCcEEEEeCC
Confidence            9999987543    5667899999999999999999763

>3dh0_A SAM dependent methyltransferase; cystal structure, PSI-2, NYSGXRC, structural genomics, protein structure initiative; HET: SAM; 2.72A {Aquifex aeolicus}

Probab=99.63  E-value=4.1e-15  Score=128.24  Aligned_cols=152  Identities=18%  Similarity=0.095  Sum_probs=109.3

Q ss_pred             hcCCCCCCEEEEeccCCChhhHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEccccchhhcCCCcc
Q 042119          125 ENGVVQPKKVAFVGSGPMPLTSIIMAKHHLTSTHFDNFDIDEAANDVARSIVASDAEFEGRMKFLTRDIMEVKEQLGEYD  204 (286)
Q Consensus       125 ~~~~~~~~~VL~IG~G~lp~tai~lA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~g~l~~~i~f~~~D~~~~~~~l~~fD  204 (286)
                      .....++.+|||||||+ |..+..+++...++.+|+++|+|+++++.|++.+...| + .+++|+++|+.+.+...+.||
T Consensus        32 ~~~~~~~~~vLDiG~G~-G~~~~~l~~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~-~-~~~~~~~~d~~~~~~~~~~fD  108 (219)
T 3dh0_A           32 EFGLKEGMTVLDVGTGA-GFYLPYLSKMVGEKGKVYAIDVQEEMVNYAWEKVNKLG-L-KNVEVLKSEENKIPLPDNTVD  108 (219)
T ss_dssp             HHTCCTTCEEEESSCTT-CTTHHHHHHHHTTTCEEEEEESCHHHHHHHHHHHHHHT-C-TTEEEEECBTTBCSSCSSCEE
T ss_pred             HhCCCCCCEEEEEecCC-CHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHcC-C-CcEEEEecccccCCCCCCCee
Confidence            44567889999999997 55667777743367899999999999999999999988 4 489999999988765556799


Q ss_pred             eeehhhhccCChhHHHHHHHHHHhhccCCcEEEEeecCccee----eecccCCcccc------cCcEEEEEecCccccee
Q 042119          205 CIFLAALVGMSKEEKLTILGHIRKYMKDGGILLVRSAKGARA----FLYPVVVEHDL------LDFEVLSAVHPNDDVIN  274 (286)
Q Consensus       205 ~V~~aalvg~~~~~k~~vl~~l~~~l~pgg~lv~r~~~g~r~----~lyp~v~~~~l------~gf~~~~~~~P~~~vin  274 (286)
                      +|+....+.. .++...+++++.+.|+|||.+++.+......    ........+++      .||+++....-.+  ..
T Consensus       109 ~v~~~~~l~~-~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~~~~~~~~~~--~~  185 (219)
T 3dh0_A          109 FIFMAFTFHE-LSEPLKFLEELKRVAKPFAYLAIIDWKKEERDKGPPPEEVYSEWEVGLILEDAGIRVGRVVEVGK--YC  185 (219)
T ss_dssp             EEEEESCGGG-CSSHHHHHHHHHHHEEEEEEEEEEEECSSCCSSSCCGGGSCCHHHHHHHHHHTTCEEEEEEEETT--TE
T ss_pred             EEEeehhhhh-cCCHHHHHHHHHHHhCCCeEEEEEEecccccccCCchhcccCHHHHHHHHHHCCCEEEEEEeeCC--ce
Confidence            9997654422 2466789999999999999999976321111    11111122221      5999876654332  34


Q ss_pred             eeEEEeec
Q 042119          275 SVVLVRNS  282 (286)
Q Consensus       275 svi~~r~~  282 (286)
                      -.+++||+
T Consensus       186 ~~~~~~k~  193 (219)
T 3dh0_A          186 FGVYAMIV  193 (219)
T ss_dssp             EEEEEECC
T ss_pred             EEEEEEec
Confidence            46777775

>1xdz_A Methyltransferase GIDB; MCSG, protein structure initiative, structural genomics, methyltransferase fold, PSI; 1.60A {Bacillus subtilis} SCOP: c.66.1.20

Probab=99.62  E-value=1.8e-15  Score=133.69  Aligned_cols=145  Identities=14%  Similarity=0.129  Sum_probs=105.0

Q ss_pred             CCCCEEEEeccCCChhhHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEccccchhhc---CCCcce
Q 042119          129 VQPKKVAFVGSGPMPLTSIIMAKHHLTSTHFDNFDIDEAANDVARSIVASDAEFEGRMKFLTRDIMEVKEQ---LGEYDC  205 (286)
Q Consensus       129 ~~~~~VL~IG~G~lp~tai~lA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~g~l~~~i~f~~~D~~~~~~~---l~~fD~  205 (286)
                      .++.+|||||||+ |..++.+|+ ..++++|+++|+|+++++.|++.++..| +. +++|+++|+.+++..   .+.||+
T Consensus        69 ~~~~~vLDiG~G~-G~~~~~la~-~~~~~~v~~vD~s~~~~~~a~~~~~~~~-~~-~v~~~~~d~~~~~~~~~~~~~fD~  144 (240)
T 1xdz_A           69 NQVNTICDVGAGA-GFPSLPIKI-CFPHLHVTIVDSLNKRITFLEKLSEALQ-LE-NTTFCHDRAETFGQRKDVRESYDI  144 (240)
T ss_dssp             GGCCEEEEECSSS-CTTHHHHHH-HCTTCEEEEEESCHHHHHHHHHHHHHHT-CS-SEEEEESCHHHHTTCTTTTTCEEE
T ss_pred             CCCCEEEEecCCC-CHHHHHHHH-hCCCCEEEEEeCCHHHHHHHHHHHHHcC-CC-CEEEEeccHHHhcccccccCCccE
Confidence            4678999999996 777888886 3588999999999999999999999999 44 699999999887643   357999


Q ss_pred             eehhhhccCChhHHHHHHHHHHhhccCCcEEEEeecCcceeeecccCCcccccCcEEEE---EecCcccceeeeEEEeec
Q 042119          206 IFLAALVGMSKEEKLTILGHIRKYMKDGGILLVRSAKGARAFLYPVVVEHDLLDFEVLS---AVHPNDDVINSVVLVRNS  282 (286)
Q Consensus       206 V~~aalvg~~~~~k~~vl~~l~~~l~pgg~lv~r~~~g~r~~lyp~v~~~~l~gf~~~~---~~~P~~~vinsvi~~r~~  282 (286)
                      |+..+.     .+...+++.+.+.|+|||.+++-.+.....-+-.....-.-.||++..   ..+|..+....+++++|+
T Consensus       145 V~~~~~-----~~~~~~l~~~~~~LkpgG~l~~~~g~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~l~~~~k~  219 (240)
T 1xdz_A          145 VTARAV-----ARLSVLSELCLPLVKKNGLFVALKAASAEEELNAGKKAITTLGGELENIHSFKLPIEESDRNIMVIRKI  219 (240)
T ss_dssp             EEEECC-----SCHHHHHHHHGGGEEEEEEEEEEECC-CHHHHHHHHHHHHHTTEEEEEEEEEECTTTCCEEEEEEEEEC
T ss_pred             EEEecc-----CCHHHHHHHHHHhcCCCCEEEEEeCCCchHHHHHHHHHHHHcCCeEeEEEEEecCCCCCceEEEEEEec
Confidence            997653     466789999999999999998864221100000000000114776653   446776666667777774

>3mti_A RRNA methylase; SAM-dependent, PSI, MCSG, structural genomics, midwest cente structural genomics, protein structure initiative; 1.95A {Streptococcus thermophilus} PDB: 3lby_A*

Probab=99.62  E-value=6.2e-15  Score=124.24  Aligned_cols=109  Identities=12%  Similarity=0.085  Sum_probs=87.3

Q ss_pred             CCCCCCEEEEeccCCChhhHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEccccchhhc-CCCcce
Q 042119          127 GVVQPKKVAFVGSGPMPLTSIIMAKHHLTSTHFDNFDIDEAANDVARSIVASDAEFEGRMKFLTRDIMEVKEQ-LGEYDC  205 (286)
Q Consensus       127 ~~~~~~~VL~IG~G~lp~tai~lA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~g~l~~~i~f~~~D~~~~~~~-l~~fD~  205 (286)
                      .+.++.+|||||||+ |..++.+|+   .+.+|+|+|+|+++++.|++.++..| + ++++|+++|..++... .+.||+
T Consensus        19 ~~~~~~~vLDiGcG~-G~~~~~la~---~~~~v~~vD~s~~~l~~a~~~~~~~~-~-~~v~~~~~~~~~l~~~~~~~fD~   92 (185)
T 3mti_A           19 VLDDESIVVDATMGN-GNDTAFLAG---LSKKVYAFDVQEQALGKTSQRLSDLG-I-ENTELILDGHENLDHYVREPIRA   92 (185)
T ss_dssp             TCCTTCEEEESCCTT-SHHHHHHHT---TSSEEEEEESCHHHHHHHHHHHHHHT-C-CCEEEEESCGGGGGGTCCSCEEE
T ss_pred             hCCCCCEEEEEcCCC-CHHHHHHHH---hCCEEEEEECCHHHHHHHHHHHHHcC-C-CcEEEEeCcHHHHHhhccCCcCE
Confidence            457889999999997 677788988   38999999999999999999999999 5 7899999888775432 246999


Q ss_pred             eehhh-hccC-------ChhHHHHHHHHHHhhccCCcEEEEeec
Q 042119          206 IFLAA-LVGM-------SKEEKLTILGHIRKYMKDGGILLVRSA  241 (286)
Q Consensus       206 V~~aa-lvg~-------~~~~k~~vl~~l~~~l~pgg~lv~r~~  241 (286)
                      |++.. .+..       ..+...++++++.+.|||||.+++...
T Consensus        93 v~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~  136 (185)
T 3mti_A           93 AIFNLGYLPSADKSVITKPHTTLEAIEKILDRLEVGGRLAIMIY  136 (185)
T ss_dssp             EEEEEC-----------CHHHHHHHHHHHHHHEEEEEEEEEEEC
T ss_pred             EEEeCCCCCCcchhcccChhhHHHHHHHHHHhcCCCcEEEEEEe
Confidence            98652 2211       335667889999999999999988754

>3e05_A Precorrin-6Y C5,15-methyltransferase (decarboxyla; porphyrin metabolism, S-adenosyl-methionine; 1.80A {Geobacter metallireducens} SCOP: c.66.1.0

Probab=99.62  E-value=5.2e-15  Score=126.97  Aligned_cols=111  Identities=13%  Similarity=0.131  Sum_probs=93.3

Q ss_pred             HHHhcCCCCCCEEEEeccCCChhhHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEccccchhhcCC
Q 042119          122 ILSENGVVQPKKVAFVGSGPMPLTSIIMAKHHLTSTHFDNFDIDEAANDVARSIVASDAEFEGRMKFLTRDIMEVKEQLG  201 (286)
Q Consensus       122 ~l~~~~~~~~~~VL~IG~G~lp~tai~lA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~g~l~~~i~f~~~D~~~~~~~l~  201 (286)
                      .+....+.++.+|||||||+ |..++.+|+ ..++.+|+++|+|+++++.|++.++..| + ++++++++|+.+......
T Consensus        32 ~l~~l~~~~~~~vLDiG~G~-G~~~~~la~-~~~~~~v~~vD~s~~~~~~a~~~~~~~~-~-~~v~~~~~d~~~~~~~~~  107 (204)
T 3e05_A           32 TLSKLRLQDDLVMWDIGAGS-ASVSIEASN-LMPNGRIFALERNPQYLGFIRDNLKKFV-A-RNVTLVEAFAPEGLDDLP  107 (204)
T ss_dssp             HHHHTTCCTTCEEEEETCTT-CHHHHHHHH-HCTTSEEEEEECCHHHHHHHHHHHHHHT-C-TTEEEEECCTTTTCTTSC
T ss_pred             HHHHcCCCCCCEEEEECCCC-CHHHHHHHH-HCCCCEEEEEeCCHHHHHHHHHHHHHhC-C-CcEEEEeCChhhhhhcCC
Confidence            34455678889999999997 667788887 3677999999999999999999999999 4 789999999977665557


Q ss_pred             CcceeehhhhccCChhHHHHHHHHHHhhccCCcEEEEee
Q 042119          202 EYDCIFLAALVGMSKEEKLTILGHIRKYMKDGGILLVRS  240 (286)
Q Consensus       202 ~fD~V~~aalvg~~~~~k~~vl~~l~~~l~pgg~lv~r~  240 (286)
                      .||+|+.....    .+..++++++.+.|+|||++++..
T Consensus       108 ~~D~i~~~~~~----~~~~~~l~~~~~~LkpgG~l~~~~  142 (204)
T 3e05_A          108 DPDRVFIGGSG----GMLEEIIDAVDRRLKSEGVIVLNA  142 (204)
T ss_dssp             CCSEEEESCCT----TCHHHHHHHHHHHCCTTCEEEEEE
T ss_pred             CCCEEEECCCC----cCHHHHHHHHHHhcCCCeEEEEEe
Confidence            89999976543    366689999999999999999974

>3tfw_A Putative O-methyltransferase; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium; 1.88A {Klebsiella pneumoniae subsp}

Probab=99.61  E-value=4.7e-15  Score=132.19  Aligned_cols=106  Identities=21%  Similarity=0.315  Sum_probs=90.9

Q ss_pred             CCCCEEEEeccCCChhhHHHHHhhcCC-CcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEccccchhhcC---CCcc
Q 042119          129 VQPKKVAFVGSGPMPLTSIIMAKHHLT-STHFDNFDIDEAANDVARSIVASDAEFEGRMKFLTRDIMEVKEQL---GEYD  204 (286)
Q Consensus       129 ~~~~~VL~IG~G~lp~tai~lA~~~~~-g~~V~~iDid~~ai~~Ar~~~~~~g~l~~~i~f~~~D~~~~~~~l---~~fD  204 (286)
                      .++++||+||||+ |.+++.+|+. ++ +++|+++|+|+++++.|++.++..| +.++++|+++|+.+....+   +.||
T Consensus        62 ~~~~~VLdiG~G~-G~~~~~la~~-~~~~~~v~~vD~s~~~~~~a~~~~~~~g-~~~~v~~~~~d~~~~l~~~~~~~~fD  138 (248)
T 3tfw_A           62 TQAKRILEIGTLG-GYSTIWMARE-LPADGQLLTLEADAHHAQVARENLQLAG-VDQRVTLREGPALQSLESLGECPAFD  138 (248)
T ss_dssp             HTCSEEEEECCTT-SHHHHHHHTT-SCTTCEEEEEECCHHHHHHHHHHHHHTT-CTTTEEEEESCHHHHHHTCCSCCCCS
T ss_pred             cCCCEEEEecCCc-hHHHHHHHHh-CCCCCEEEEEECCHHHHHHHHHHHHHcC-CCCcEEEEEcCHHHHHHhcCCCCCeE
Confidence            4689999999996 7788899983 55 8999999999999999999999999 7789999999998754433   3799


Q ss_pred             eeehhhhccCChhHHHHHHHHHHhhccCCcEEEEeec
Q 042119          205 CIFLAALVGMSKEEKLTILGHIRKYMKDGGILLVRSA  241 (286)
Q Consensus       205 ~V~~aalvg~~~~~k~~vl~~l~~~l~pgg~lv~r~~  241 (286)
                      +||+++.    .+....+++++.+.|+|||++++.+.
T Consensus       139 ~V~~d~~----~~~~~~~l~~~~~~LkpGG~lv~~~~  171 (248)
T 3tfw_A          139 LIFIDAD----KPNNPHYLRWALRYSRPGTLIIGDNV  171 (248)
T ss_dssp             EEEECSC----GGGHHHHHHHHHHTCCTTCEEEEECC
T ss_pred             EEEECCc----hHHHHHHHHHHHHhcCCCeEEEEeCC
Confidence            9998754    36777899999999999999999763

>1jsx_A Glucose-inhibited division protein B; methyltransferase fold, structural genomics, PSI, protein structure initiative; 2.40A {Escherichia coli} SCOP: c.66.1.20

Probab=99.61  E-value=7.1e-15  Score=125.85  Aligned_cols=138  Identities=15%  Similarity=0.165  Sum_probs=103.5

Q ss_pred             CCCEEEEeccCCChhhHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEccccchhhcCCCcceeehh
Q 042119          130 QPKKVAFVGSGPMPLTSIIMAKHHLTSTHFDNFDIDEAANDVARSIVASDAEFEGRMKFLTRDIMEVKEQLGEYDCIFLA  209 (286)
Q Consensus       130 ~~~~VL~IG~G~lp~tai~lA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~g~l~~~i~f~~~D~~~~~~~l~~fD~V~~a  209 (286)
                      ++.+|||||||+ |..++.+++ ..++.+|+++|+|+++++.|++.+...| +. +++|+++|+.+.+ ..+.||+|+..
T Consensus        65 ~~~~vLDiG~G~-G~~~~~l~~-~~~~~~v~~vD~s~~~~~~a~~~~~~~~-~~-~v~~~~~d~~~~~-~~~~~D~i~~~  139 (207)
T 1jsx_A           65 QGERFIDVGTGP-GLPGIPLSI-VRPEAHFTLLDSLGKRVRFLRQVQHELK-LE-NIEPVQSRVEEFP-SEPPFDGVISR  139 (207)
T ss_dssp             CSSEEEEETCTT-TTTHHHHHH-HCTTSEEEEEESCHHHHHHHHHHHHHTT-CS-SEEEEECCTTTSC-CCSCEEEEECS
T ss_pred             CCCeEEEECCCC-CHHHHHHHH-HCCCCEEEEEeCCHHHHHHHHHHHHHcC-CC-CeEEEecchhhCC-ccCCcCEEEEe
Confidence            478999999996 566677777 4688999999999999999999999998 44 4999999998755 23579999965


Q ss_pred             hhccCChhHHHHHHHHHHhhccCCcEEEEeecCcceeeecccCCcccccCcEEEE---EecCcccceeeeEEEeec
Q 042119          210 ALVGMSKEEKLTILGHIRKYMKDGGILLVRSAKGARAFLYPVVVEHDLLDFEVLS---AVHPNDDVINSVVLVRNS  282 (286)
Q Consensus       210 alvg~~~~~k~~vl~~l~~~l~pgg~lv~r~~~g~r~~lyp~v~~~~l~gf~~~~---~~~P~~~vinsvi~~r~~  282 (286)
                      .+     ++...+++.+.+.|+|||.+++..+.....-    +. .-..||+...   ...|...-..++++.+|+
T Consensus       140 ~~-----~~~~~~l~~~~~~L~~gG~l~~~~~~~~~~~----~~-~~~~g~~~~~~~~~~~~~~~~~~~~~~~~k~  205 (207)
T 1jsx_A          140 AF-----ASLNDMVSWCHHLPGEQGRFYALKGQMPEDE----IA-LLPEEYQVESVVKLQVPALDGERHLVVIKAN  205 (207)
T ss_dssp             CS-----SSHHHHHHHHTTSEEEEEEEEEEESSCCHHH----HH-TSCTTEEEEEEEEEECC--CCEEEEEEEEEC
T ss_pred             cc-----CCHHHHHHHHHHhcCCCcEEEEEeCCCchHH----HH-HHhcCCceeeeeeeccCCCCCceEEEEEEec
Confidence            43     4567899999999999999998753211000    00 0113888764   367877778888888885

>3ntv_A MW1564 protein; rossmann fold, putative methyltransferase, transferase; HET: MSE; 1.55A {Staphylococcus aureus}

Probab=99.61  E-value=2.6e-15  Score=132.33  Aligned_cols=105  Identities=18%  Similarity=0.274  Sum_probs=91.1

Q ss_pred             CCCCEEEEeccCCChhhHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEccccchhh-c-CCCccee
Q 042119          129 VQPKKVAFVGSGPMPLTSIIMAKHHLTSTHFDNFDIDEAANDVARSIVASDAEFEGRMKFLTRDIMEVKE-Q-LGEYDCI  206 (286)
Q Consensus       129 ~~~~~VL~IG~G~lp~tai~lA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~g~l~~~i~f~~~D~~~~~~-~-l~~fD~V  206 (286)
                      .++++|||||||+ |.+++.+|+ ..++.+|+++|+|+++++.|++.++..| +.++++|+++|+.+... . .+.||+|
T Consensus        70 ~~~~~vLDiG~G~-G~~~~~la~-~~~~~~v~~vD~~~~~~~~a~~~~~~~~-~~~~v~~~~~d~~~~~~~~~~~~fD~V  146 (232)
T 3ntv_A           70 NNVKNILEIGTAI-GYSSMQFAS-ISDDIHVTTIERNETMIQYAKQNLATYH-FENQVRIIEGNALEQFENVNDKVYDMI  146 (232)
T ss_dssp             HTCCEEEEECCSS-SHHHHHHHT-TCTTCEEEEEECCHHHHHHHHHHHHHTT-CTTTEEEEESCGGGCHHHHTTSCEEEE
T ss_pred             cCCCEEEEEeCch-hHHHHHHHH-hCCCCEEEEEECCHHHHHHHHHHHHHcC-CCCcEEEEECCHHHHHHhhccCCccEE
Confidence            4688999999995 788899998 5789999999999999999999999999 67799999999987654 3 3579999


Q ss_pred             ehhhhccCChhHHHHHHHHHHhhccCCcEEEEee
Q 042119          207 FLAALVGMSKEEKLTILGHIRKYMKDGGILLVRS  240 (286)
Q Consensus       207 ~~aalvg~~~~~k~~vl~~l~~~l~pgg~lv~r~  240 (286)
                      |+.+..    +....+++.+.+.|+|||++++.+
T Consensus       147 ~~~~~~----~~~~~~l~~~~~~LkpgG~lv~d~  176 (232)
T 3ntv_A          147 FIDAAK----AQSKKFFEIYTPLLKHQGLVITDN  176 (232)
T ss_dssp             EEETTS----SSHHHHHHHHGGGEEEEEEEEEEC
T ss_pred             EEcCcH----HHHHHHHHHHHHhcCCCeEEEEee
Confidence            977543    566789999999999999999965

>3njr_A Precorrin-6Y methylase; methyltransferase, decarboxylase, transferase; HET: SAH PG4; 2.70A {Rhodobacter capsulatus}

Probab=99.61  E-value=1.1e-14  Score=126.36  Aligned_cols=109  Identities=8%  Similarity=0.096  Sum_probs=91.4

Q ss_pred             HHHhcCCCCCCEEEEeccCCChhhHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEccccchhhcCC
Q 042119          122 ILSENGVVQPKKVAFVGSGPMPLTSIIMAKHHLTSTHFDNFDIDEAANDVARSIVASDAEFEGRMKFLTRDIMEVKEQLG  201 (286)
Q Consensus       122 ~l~~~~~~~~~~VL~IG~G~lp~tai~lA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~g~l~~~i~f~~~D~~~~~~~l~  201 (286)
                      .+....+.++.+|||||||+ |..++.+|+   .+.+|+++|+|+++++.|++.++..| +.++++++++|+.+......
T Consensus        47 ~l~~l~~~~~~~vLDlGcG~-G~~~~~la~---~~~~v~~vD~s~~~~~~a~~~~~~~g-~~~~v~~~~~d~~~~~~~~~  121 (204)
T 3njr_A           47 TLAALAPRRGELLWDIGGGS-GSVSVEWCL---AGGRAITIEPRADRIENIQKNIDTYG-LSPRMRAVQGTAPAALADLP  121 (204)
T ss_dssp             HHHHHCCCTTCEEEEETCTT-CHHHHHHHH---TTCEEEEEESCHHHHHHHHHHHHHTT-CTTTEEEEESCTTGGGTTSC
T ss_pred             HHHhcCCCCCCEEEEecCCC-CHHHHHHHH---cCCEEEEEeCCHHHHHHHHHHHHHcC-CCCCEEEEeCchhhhcccCC
Confidence            34455678889999999997 777788888   38999999999999999999999999 56689999999988555556


Q ss_pred             CcceeehhhhccCChhHHHHHHHHHHhhccCCcEEEEeec
Q 042119          202 EYDCIFLAALVGMSKEEKLTILGHIRKYMKDGGILLVRSA  241 (286)
Q Consensus       202 ~fD~V~~aalvg~~~~~k~~vl~~l~~~l~pgg~lv~r~~  241 (286)
                      .||+||.....     +.. +++++.+.|+|||++++...
T Consensus       122 ~~D~v~~~~~~-----~~~-~l~~~~~~LkpgG~lv~~~~  155 (204)
T 3njr_A          122 LPEAVFIGGGG-----SQA-LYDRLWEWLAPGTRIVANAV  155 (204)
T ss_dssp             CCSEEEECSCC-----CHH-HHHHHHHHSCTTCEEEEEEC
T ss_pred             CCCEEEECCcc-----cHH-HHHHHHHhcCCCcEEEEEec
Confidence            89999976522     344 99999999999999999763

>1sui_A Caffeoyl-COA O-methyltransferase; rossmann fold, protein-cofactor-substrate complex; HET: SAH FRE; 2.70A {Medicago sativa} SCOP: c.66.1.1 PDB: 1sus_A*

Probab=99.60  E-value=2.5e-15  Score=134.34  Aligned_cols=105  Identities=16%  Similarity=0.290  Sum_probs=91.1

Q ss_pred             CCCCEEEEeccCCChhhHHHHHhhcCC-CcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEccccchhhc-------C
Q 042119          129 VQPKKVAFVGSGPMPLTSIIMAKHHLT-STHFDNFDIDEAANDVARSIVASDAEFEGRMKFLTRDIMEVKEQ-------L  200 (286)
Q Consensus       129 ~~~~~VL~IG~G~lp~tai~lA~~~~~-g~~V~~iDid~~ai~~Ar~~~~~~g~l~~~i~f~~~D~~~~~~~-------l  200 (286)
                      .++++||+||||+ |.+++++|+. ++ +++|+++|+|+++++.|++.++..| +.++++|+++|+.+....       .
T Consensus        78 ~~~~~VLeiG~G~-G~~~~~la~~-~~~~~~v~~iD~s~~~~~~a~~~~~~~g-~~~~i~~~~gda~~~l~~l~~~~~~~  154 (247)
T 1sui_A           78 INAKNTMEIGVYT-GYSLLATALA-IPEDGKILAMDINKENYELGLPVIKKAG-VDHKIDFREGPALPVLDEMIKDEKNH  154 (247)
T ss_dssp             TTCCEEEEECCGG-GHHHHHHHHH-SCTTCEEEEEESCCHHHHHHHHHHHHTT-CGGGEEEEESCHHHHHHHHHHSGGGT
T ss_pred             hCcCEEEEeCCCc-CHHHHHHHHh-CCCCCEEEEEECCHHHHHHHHHHHHHcC-CCCCeEEEECCHHHHHHHHHhccCCC
Confidence            4678999999995 8899999984 44 8999999999999999999999999 778999999999875432       3


Q ss_pred             CCcceeehhhhccCChhHHHHHHHHHHhhccCCcEEEEee
Q 042119          201 GEYDCIFLAALVGMSKEEKLTILGHIRKYMKDGGILLVRS  240 (286)
Q Consensus       201 ~~fD~V~~aalvg~~~~~k~~vl~~l~~~l~pgg~lv~r~  240 (286)
                      +.||+||+++..    .....+++.+.+.|+|||++++.+
T Consensus       155 ~~fD~V~~d~~~----~~~~~~l~~~~~~LkpGG~lv~d~  190 (247)
T 1sui_A          155 GSYDFIFVDADK----DNYLNYHKRLIDLVKVGGVIGYDN  190 (247)
T ss_dssp             TCBSEEEECSCS----TTHHHHHHHHHHHBCTTCCEEEEC
T ss_pred             CCEEEEEEcCch----HHHHHHHHHHHHhCCCCeEEEEec
Confidence            579999987643    567789999999999999999976

>3p9n_A Possible methyltransferase (methylase); RV2966C, adoMet binding, RNA methylase, RSMD, SAM-fold, RNA methyltransferase; 1.90A {Mycobacterium tuberculosis}

Probab=99.60  E-value=2.2e-14  Score=121.72  Aligned_cols=125  Identities=10%  Similarity=0.102  Sum_probs=95.0

Q ss_pred             hhhhHHHHHHHHhcCCCCCCEEEEeccCCChhhHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEcc
Q 042119          113 VKLSKLEYTILSENGVVQPKKVAFVGSGPMPLTSIIMAKHHLTSTHFDNFDIDEAANDVARSIVASDAEFEGRMKFLTRD  192 (286)
Q Consensus       113 ~~l~~~E~~~l~~~~~~~~~~VL~IG~G~lp~tai~lA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~g~l~~~i~f~~~D  192 (286)
                      ..+.+.=+..+......++.+|||+|||++ ..++.+++  ....+|+++|+|+++++.|++.++..| + ++++|+++|
T Consensus        27 ~~~~~~l~~~l~~~~~~~~~~vLDlgcG~G-~~~~~~~~--~~~~~v~~vD~~~~~~~~a~~~~~~~~-~-~~v~~~~~d  101 (189)
T 3p9n_A           27 DRVRESLFNIVTARRDLTGLAVLDLYAGSG-ALGLEALS--RGAASVLFVESDQRSAAVIARNIEALG-L-SGATLRRGA  101 (189)
T ss_dssp             HHHHHHHHHHHHHHSCCTTCEEEEETCTTC-HHHHHHHH--TTCSEEEEEECCHHHHHHHHHHHHHHT-C-SCEEEEESC
T ss_pred             HHHHHHHHHHHHhccCCCCCEEEEeCCCcC-HHHHHHHH--CCCCeEEEEECCHHHHHHHHHHHHHcC-C-CceEEEEcc
Confidence            333333334443333357899999999975 45555565  255689999999999999999999999 5 789999999


Q ss_pred             ccchhhc--CCCcceeehhhhccCChhHHHHHHHHHHh--hccCCcEEEEeecC
Q 042119          193 IMEVKEQ--LGEYDCIFLAALVGMSKEEKLTILGHIRK--YMKDGGILLVRSAK  242 (286)
Q Consensus       193 ~~~~~~~--l~~fD~V~~aalvg~~~~~k~~vl~~l~~--~l~pgg~lv~r~~~  242 (286)
                      +.+....  .+.||+|+.+...+...++..++++.+.+  .|+|||++++....
T Consensus       102 ~~~~~~~~~~~~fD~i~~~~p~~~~~~~~~~~l~~~~~~~~L~pgG~l~~~~~~  155 (189)
T 3p9n_A          102 VAAVVAAGTTSPVDLVLADPPYNVDSADVDAILAALGTNGWTREGTVAVVERAT  155 (189)
T ss_dssp             HHHHHHHCCSSCCSEEEECCCTTSCHHHHHHHHHHHHHSSSCCTTCEEEEEEET
T ss_pred             HHHHHhhccCCCccEEEECCCCCcchhhHHHHHHHHHhcCccCCCeEEEEEecC
Confidence            9887643  35799999764434334677889999999  99999999997654

>2gb4_A Thiopurine S-methyltransferase; 18204406, thiopurine methyltransferase, structural genomics, PSI, protein structure initiative; HET: SAH; 1.25A {Mus musculus} PDB: 3bgi_A* 3bgd_A* 2bzg_A* 2h11_A*

Probab=99.60  E-value=3.9e-15  Score=133.87  Aligned_cols=107  Identities=16%  Similarity=0.133  Sum_probs=85.6

Q ss_pred             CCCCEEEEeccCCChhhHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHh---------cC------CCCCCeEEEEccc
Q 042119          129 VQPKKVAFVGSGPMPLTSIIMAKHHLTSTHFDNFDIDEAANDVARSIVAS---------DA------EFEGRMKFLTRDI  193 (286)
Q Consensus       129 ~~~~~VL~IG~G~lp~tai~lA~~~~~g~~V~~iDid~~ai~~Ar~~~~~---------~g------~l~~~i~f~~~D~  193 (286)
                      .++.+||++|||+ |..+.+||+   .|.+|+|||+|+.|++.|++....         .+      ....+++|+++|+
T Consensus        67 ~~~~~vLD~GCG~-G~~~~~La~---~G~~V~gvD~S~~~i~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~D~  142 (252)
T 2gb4_A           67 QSGLRVFFPLCGK-AIEMKWFAD---RGHTVVGVEISEIGIREFFAEQNLSYTEEPLAEIAGAKVFKSSSGSISLYCCSI  142 (252)
T ss_dssp             CCSCEEEETTCTT-CTHHHHHHH---TTCEEEEECSCHHHHHHHHHHTTCCEEEEECTTSTTCEEEEETTSSEEEEESCT
T ss_pred             CCCCeEEEeCCCC-cHHHHHHHH---CCCeEEEEECCHHHHHHHHHhcccccccccccccccccccccCCCceEEEECcc
Confidence            5778999999996 777889998   689999999999999999876431         00      0125899999999


Q ss_pred             cchhhcC-CCcceeehhh-hccCChhHHHHHHHHHHhhccCCcEEEEe
Q 042119          194 MEVKEQL-GEYDCIFLAA-LVGMSKEEKLTILGHIRKYMKDGGILLVR  239 (286)
Q Consensus       194 ~~~~~~l-~~fD~V~~aa-lvg~~~~~k~~vl~~l~~~l~pgg~lv~r  239 (286)
                      .+++... +.||+|+... +..++.+++..+++++.+.|||||++++.
T Consensus       143 ~~l~~~~~~~FD~V~~~~~l~~l~~~~~~~~l~~~~~~LkpGG~l~l~  190 (252)
T 2gb4_A          143 FDLPRANIGKFDRIWDRGALVAINPGDHDRYADIILSLLRKEFQYLVA  190 (252)
T ss_dssp             TTGGGGCCCCEEEEEESSSTTTSCGGGHHHHHHHHHHTEEEEEEEEEE
T ss_pred             ccCCcccCCCEEEEEEhhhhhhCCHHHHHHHHHHHHHHcCCCeEEEEE
Confidence            9987653 6899998543 33456677889999999999999998643

>3tr6_A O-methyltransferase; cellular processes; HET: SAH; 2.70A {Coxiella burnetii} SCOP: c.66.1.0

Probab=99.60  E-value=3.5e-15  Score=129.58  Aligned_cols=106  Identities=21%  Similarity=0.307  Sum_probs=90.3

Q ss_pred             CCCCEEEEeccCCChhhHHHHHhhcCC-CcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEccccchhhcC------C
Q 042119          129 VQPKKVAFVGSGPMPLTSIIMAKHHLT-STHFDNFDIDEAANDVARSIVASDAEFEGRMKFLTRDIMEVKEQL------G  201 (286)
Q Consensus       129 ~~~~~VL~IG~G~lp~tai~lA~~~~~-g~~V~~iDid~~ai~~Ar~~~~~~g~l~~~i~f~~~D~~~~~~~l------~  201 (286)
                      .++.+||+||||+ |..++.+|++ ++ +++|+++|+|+++++.|++.++..| +.++++|+++|+.+....+      +
T Consensus        63 ~~~~~vLdiG~G~-G~~~~~la~~-~~~~~~v~~vD~~~~~~~~a~~~~~~~~-~~~~v~~~~~d~~~~~~~~~~~~~~~  139 (225)
T 3tr6_A           63 MQAKKVIDIGTFT-GYSAIAMGLA-LPKDGTLITCDVDEKSTALAKEYWEKAG-LSDKIGLRLSPAKDTLAELIHAGQAW  139 (225)
T ss_dssp             HTCSEEEEECCTT-SHHHHHHHTT-CCTTCEEEEEESCHHHHHHHHHHHHHTT-CTTTEEEEESCHHHHHHHHHTTTCTT
T ss_pred             hCCCEEEEeCCcc-hHHHHHHHHh-CCCCCEEEEEeCCHHHHHHHHHHHHHCC-CCCceEEEeCCHHHHHHHhhhccCCC
Confidence            4678999999996 7788889983 44 8999999999999999999999999 7788999999997754332      5


Q ss_pred             CcceeehhhhccCChhHHHHHHHHHHhhccCCcEEEEeec
Q 042119          202 EYDCIFLAALVGMSKEEKLTILGHIRKYMKDGGILLVRSA  241 (286)
Q Consensus       202 ~fD~V~~aalvg~~~~~k~~vl~~l~~~l~pgg~lv~r~~  241 (286)
                      .||+||+++.    .+....+++.+.+.|+|||++++.+.
T Consensus       140 ~fD~v~~~~~----~~~~~~~l~~~~~~L~pgG~lv~~~~  175 (225)
T 3tr6_A          140 QYDLIYIDAD----KANTDLYYEESLKLLREGGLIAVDNV  175 (225)
T ss_dssp             CEEEEEECSC----GGGHHHHHHHHHHHEEEEEEEEEECS
T ss_pred             CccEEEECCC----HHHHHHHHHHHHHhcCCCcEEEEeCC
Confidence            7999997654    35677899999999999999999763

>3orh_A Guanidinoacetate N-methyltransferase; structura genomics, structural genomics consortium, SGC; HET: SAH; 1.86A {Homo sapiens} PDB: 1xcj_A* 1xcl_A* 1p1c_A* 1p1b_A* 1khh_A*

Probab=99.60  E-value=1.7e-15  Score=134.20  Aligned_cols=110  Identities=16%  Similarity=0.177  Sum_probs=90.1

Q ss_pred             hcCCCCCCEEEEeccCCChhhHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEccccchhhcC--CC
Q 042119          125 ENGVVQPKKVAFVGSGPMPLTSIIMAKHHLTSTHFDNFDIDEAANDVARSIVASDAEFEGRMKFLTRDIMEVKEQL--GE  202 (286)
Q Consensus       125 ~~~~~~~~~VL~IG~G~lp~tai~lA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~g~l~~~i~f~~~D~~~~~~~l--~~  202 (286)
                      +....++.|||+|||| .|.++..+++  ..+.+||+||+||++++.|++..+..+   .+++++.+|+.++...+  ..
T Consensus        55 ~~~~~~G~rVLdiG~G-~G~~~~~~~~--~~~~~v~~id~~~~~~~~a~~~~~~~~---~~~~~~~~~a~~~~~~~~~~~  128 (236)
T 3orh_A           55 AAASSKGGRVLEVGFG-MAIAASKVQE--APIDEHWIIECNDGVFQRLRDWAPRQT---HKVIPLKGLWEDVAPTLPDGH  128 (236)
T ss_dssp             HHHTTTCEEEEEECCT-TSHHHHHHTT--SCEEEEEEEECCHHHHHHHHHHGGGCS---SEEEEEESCHHHHGGGSCTTC
T ss_pred             HhhccCCCeEEEECCC-ccHHHHHHHH--hCCcEEEEEeCCHHHHHHHHHHHhhCC---CceEEEeehHHhhcccccccC
Confidence            3345788999999999 5888999988  356899999999999999999988877   47899999998765444  46


Q ss_pred             cceeehhhhc----cCChhHHHHHHHHHHhhccCCcEEEEee
Q 042119          203 YDCIFLAALV----GMSKEEKLTILGHIRKYMKDGGILLVRS  240 (286)
Q Consensus       203 fD~V~~aalv----g~~~~~k~~vl~~l~~~l~pgg~lv~r~  240 (286)
                      ||.|+++..+    ..+..++..++++++|+|||||++++-+
T Consensus       129 FD~i~~D~~~~~~~~~~~~~~~~~~~e~~rvLkPGG~l~f~~  170 (236)
T 3orh_A          129 FDGILYDTYPLSEETWHTHQFNFIKNHAFRLLKPGGVLTYCN  170 (236)
T ss_dssp             EEEEEECCCCCBGGGTTTHHHHHHHHTHHHHEEEEEEEEECC
T ss_pred             CceEEEeeeecccchhhhcchhhhhhhhhheeCCCCEEEEEe
Confidence            9999865432    3345688899999999999999998865

>3c3y_A Pfomt, O-methyltransferase; plant secondary metabolism; HET: SAH; 1.37A {Mesembryanthemum crystallinum}

Probab=99.59  E-value=3.3e-15  Score=132.47  Aligned_cols=107  Identities=21%  Similarity=0.293  Sum_probs=91.6

Q ss_pred             CCCCEEEEeccCCChhhHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEccccchhhc-------CC
Q 042119          129 VQPKKVAFVGSGPMPLTSIIMAKHHLTSTHFDNFDIDEAANDVARSIVASDAEFEGRMKFLTRDIMEVKEQ-------LG  201 (286)
Q Consensus       129 ~~~~~VL~IG~G~lp~tai~lA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~g~l~~~i~f~~~D~~~~~~~-------l~  201 (286)
                      .++++||+||||+ |.+++++|+...++++|+++|+|+++++.|++.+++.| +.++++++++|+.+....       .+
T Consensus        69 ~~~~~VLeiG~G~-G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~g-~~~~i~~~~gda~~~l~~l~~~~~~~~  146 (237)
T 3c3y_A           69 VNAKKTIEVGVFT-GYSLLLTALSIPDDGKITAIDFDREAYEIGLPFIRKAG-VEHKINFIESDAMLALDNLLQGQESEG  146 (237)
T ss_dssp             TTCCEEEEECCTT-SHHHHHHHHHSCTTCEEEEEESCHHHHHHHHHHHHHTT-CGGGEEEEESCHHHHHHHHHHSTTCTT
T ss_pred             hCCCEEEEeCCCC-CHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcC-CCCcEEEEEcCHHHHHHHHHhccCCCC
Confidence            4678999999995 88899999843338999999999999999999999999 678999999999876432       35


Q ss_pred             CcceeehhhhccCChhHHHHHHHHHHhhccCCcEEEEeec
Q 042119          202 EYDCIFLAALVGMSKEEKLTILGHIRKYMKDGGILLVRSA  241 (286)
Q Consensus       202 ~fD~V~~aalvg~~~~~k~~vl~~l~~~l~pgg~lv~r~~  241 (286)
                      .||+||+++..    +....+++.+.+.|+|||++++.+.
T Consensus       147 ~fD~I~~d~~~----~~~~~~l~~~~~~L~pGG~lv~d~~  182 (237)
T 3c3y_A          147 SYDFGFVDADK----PNYIKYHERLMKLVKVGGIVAYDNT  182 (237)
T ss_dssp             CEEEEEECSCG----GGHHHHHHHHHHHEEEEEEEEEECT
T ss_pred             CcCEEEECCch----HHHHHHHHHHHHhcCCCeEEEEecC
Confidence            79999987543    5778899999999999999999873

>3g89_A Ribosomal RNA small subunit methyltransferase G; 16S rRNA methyltransferase, translation, cytoplasm, rRNA processing; HET: HIC SAM AMP; 1.50A {Thermus thermophilus} PDB: 3g88_A* 3g8a_A* 3g8b_A*

Probab=99.59  E-value=1e-14  Score=130.76  Aligned_cols=140  Identities=9%  Similarity=0.065  Sum_probs=103.8

Q ss_pred             CCCCEEEEeccCCChhhHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEccccchhhc---CCCcce
Q 042119          129 VQPKKVAFVGSGPMPLTSIIMAKHHLTSTHFDNFDIDEAANDVARSIVASDAEFEGRMKFLTRDIMEVKEQ---LGEYDC  205 (286)
Q Consensus       129 ~~~~~VL~IG~G~lp~tai~lA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~g~l~~~i~f~~~D~~~~~~~---l~~fD~  205 (286)
                      .++.+|||||||+ |..++.+|+ ..++++|+++|+|+++++.|+++++..| +. +++|+++|+.++...   .+.||+
T Consensus        79 ~~~~~vLDiG~G~-G~~~i~la~-~~~~~~v~~vD~s~~~~~~a~~~~~~~~-l~-~v~~~~~d~~~~~~~~~~~~~fD~  154 (249)
T 3g89_A           79 QGPLRVLDLGTGA-GFPGLPLKI-VRPELELVLVDATRKKVAFVERAIEVLG-LK-GARALWGRAEVLAREAGHREAYAR  154 (249)
T ss_dssp             CSSCEEEEETCTT-TTTHHHHHH-HCTTCEEEEEESCHHHHHHHHHHHHHHT-CS-SEEEEECCHHHHTTSTTTTTCEEE
T ss_pred             CCCCEEEEEcCCC-CHHHHHHHH-HCCCCEEEEEECCHHHHHHHHHHHHHhC-CC-ceEEEECcHHHhhcccccCCCceE
Confidence            5678999999996 788888998 4789999999999999999999999999 54 599999999887653   257999


Q ss_pred             eehhhhccCChhHHHHHHHHHHhhccCCcEEEEeecCcceeeecccCCcc----cccCcEEEE---EecCcccceeeeEE
Q 042119          206 IFLAALVGMSKEEKLTILGHIRKYMKDGGILLVRSAKGARAFLYPVVVEH----DLLDFEVLS---AVHPNDDVINSVVL  278 (286)
Q Consensus       206 V~~aalvg~~~~~k~~vl~~l~~~l~pgg~lv~r~~~g~r~~lyp~v~~~----~l~gf~~~~---~~~P~~~vinsvi~  278 (286)
                      |+..+.     .+...+++.+.+.|+|||++++-.+...    .+.+...    ...||++..   ...|..+-.-.+++
T Consensus       155 I~s~a~-----~~~~~ll~~~~~~LkpgG~l~~~~g~~~----~~e~~~~~~~l~~~G~~~~~~~~~~~p~~~~~R~l~~  225 (249)
T 3g89_A          155 AVARAV-----APLCVLSELLLPFLEVGGAAVAMKGPRV----EEELAPLPPALERLGGRLGEVLALQLPLSGEARHLVV  225 (249)
T ss_dssp             EEEESS-----CCHHHHHHHHGGGEEEEEEEEEEECSCC----HHHHTTHHHHHHHHTEEEEEEEEEECTTTCCEEEEEE
T ss_pred             EEECCc-----CCHHHHHHHHHHHcCCCeEEEEEeCCCc----HHHHHHHHHHHHHcCCeEEEEEEeeCCCCCCcEEEEE
Confidence            997654     3456899999999999999887543211    0111110    113776543   33576555556777


Q ss_pred             Eee
Q 042119          279 VRN  281 (286)
Q Consensus       279 ~r~  281 (286)
                      .+|
T Consensus       226 ~~k  228 (249)
T 3g89_A          226 LEK  228 (249)
T ss_dssp             EEE
T ss_pred             EEe
Confidence            776

>2o57_A Putative sarcosine dimethylglycine methyltransferase; structural genomics, protein structure initiative, PSI-2; 1.95A {Galdieria sulphuraria} SCOP: c.66.1.18

Probab=99.59  E-value=2e-14  Score=130.07  Aligned_cols=109  Identities=13%  Similarity=0.195  Sum_probs=90.6

Q ss_pred             CCCCCCEEEEeccCCChhhHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEccccchhhcCCCccee
Q 042119          127 GVVQPKKVAFVGSGPMPLTSIIMAKHHLTSTHFDNFDIDEAANDVARSIVASDAEFEGRMKFLTRDIMEVKEQLGEYDCI  206 (286)
Q Consensus       127 ~~~~~~~VL~IG~G~lp~tai~lA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~g~l~~~i~f~~~D~~~~~~~l~~fD~V  206 (286)
                      ...++.+|||||||+ |..+..+++.  .|++|+|+|+|+.+++.|++.++..| +.++++|+++|+.+++...+.||+|
T Consensus        79 ~~~~~~~vLDiGcG~-G~~~~~l~~~--~~~~v~gvD~s~~~~~~a~~~~~~~~-~~~~~~~~~~d~~~~~~~~~~fD~v  154 (297)
T 2o57_A           79 VLQRQAKGLDLGAGY-GGAARFLVRK--FGVSIDCLNIAPVQNKRNEEYNNQAG-LADNITVKYGSFLEIPCEDNSYDFI  154 (297)
T ss_dssp             CCCTTCEEEEETCTT-SHHHHHHHHH--HCCEEEEEESCHHHHHHHHHHHHHHT-CTTTEEEEECCTTSCSSCTTCEEEE
T ss_pred             CCCCCCEEEEeCCCC-CHHHHHHHHH--hCCEEEEEeCCHHHHHHHHHHHHhcC-CCcceEEEEcCcccCCCCCCCEeEE
Confidence            457889999999996 5566677773  37899999999999999999999999 7789999999998877655689999


Q ss_pred             ehhhhccCChhHHHHHHHHHHhhccCCcEEEEee
Q 042119          207 FLAALVGMSKEEKLTILGHIRKYMKDGGILLVRS  240 (286)
Q Consensus       207 ~~aalvg~~~~~k~~vl~~l~~~l~pgg~lv~r~  240 (286)
                      +....+.+ .+++..+++++.+.|||||.+++.+
T Consensus       155 ~~~~~l~~-~~~~~~~l~~~~~~LkpgG~l~~~~  187 (297)
T 2o57_A          155 WSQDAFLH-SPDKLKVFQECARVLKPRGVMAITD  187 (297)
T ss_dssp             EEESCGGG-CSCHHHHHHHHHHHEEEEEEEEEEE
T ss_pred             Eecchhhh-cCCHHHHHHHHHHHcCCCeEEEEEE
Confidence            86543321 2457889999999999999999976

>3jwg_A HEN1, methyltransferase type 12; 1.90A {Clostridium thermocellum} PDB: 3jwi_A

Probab=99.59  E-value=7.9e-15  Score=126.82  Aligned_cols=109  Identities=12%  Similarity=0.227  Sum_probs=87.9

Q ss_pred             CCCCEEEEeccCCChhhHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCC----CeEEEEccccchhhcCCCcc
Q 042119          129 VQPKKVAFVGSGPMPLTSIIMAKHHLTSTHFDNFDIDEAANDVARSIVASDAEFEG----RMKFLTRDIMEVKEQLGEYD  204 (286)
Q Consensus       129 ~~~~~VL~IG~G~lp~tai~lA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~g~l~~----~i~f~~~D~~~~~~~l~~fD  204 (286)
                      .++.+|||||||+ |..+..+++ ..+..+|+|+|+|+++++.|++.+...+ +.+    +++|+++|+...+...+.||
T Consensus        28 ~~~~~vLDiGcG~-G~~~~~l~~-~~~~~~v~gvD~s~~~~~~a~~~~~~~~-~~~~~~~~v~~~~~d~~~~~~~~~~fD  104 (219)
T 3jwg_A           28 VNAKKVIDLGCGE-GNLLSLLLK-DKSFEQITGVDVSYSVLERAKDRLKIDR-LPEMQRKRISLFQSSLVYRDKRFSGYD  104 (219)
T ss_dssp             TTCCEEEEETCTT-CHHHHHHHT-STTCCEEEEEESCHHHHHHHHHHHTGGG-SCHHHHTTEEEEECCSSSCCGGGTTCS
T ss_pred             cCCCEEEEecCCC-CHHHHHHHh-cCCCCEEEEEECCHHHHHHHHHHHHhhc-cccccCcceEEEeCcccccccccCCCC
Confidence            5678999999997 566677777 3556899999999999999999988877 544    89999999976665556899


Q ss_pred             eeehhhhc-cCChhHHHHHHHHHHhhccCCcEEEEee
Q 042119          205 CIFLAALV-GMSKEEKLTILGHIRKYMKDGGILLVRS  240 (286)
Q Consensus       205 ~V~~aalv-g~~~~~k~~vl~~l~~~l~pgg~lv~r~  240 (286)
                      +|+....+ ..+.++..++++++.+.|||||+++...
T Consensus       105 ~V~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~~i~~~  141 (219)
T 3jwg_A          105 AATVIEVIEHLDENRLQAFEKVLFEFTRPQTVIVSTP  141 (219)
T ss_dssp             EEEEESCGGGCCHHHHHHHHHHHHTTTCCSEEEEEEE
T ss_pred             EEEEHHHHHhCCHHHHHHHHHHHHHhhCCCEEEEEcc
Confidence            99865544 4455566789999999999999777653

>3kkz_A Uncharacterized protein Q5LES9; putative methyltransferase, BFR250, NESG, structural genomics, PSI-2; HET: SAM; 1.68A {Bacteroides fragilis nctc 9343} PDB: 3e7p_A 3t7s_A* 3t7r_A* 3t7t_A*

Probab=99.59  E-value=1.1e-14  Score=129.85  Aligned_cols=107  Identities=19%  Similarity=0.246  Sum_probs=91.0

Q ss_pred             CCCCCEEEEeccCCChhhHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEccccchhhcCCCcceee
Q 042119          128 VVQPKKVAFVGSGPMPLTSIIMAKHHLTSTHFDNFDIDEAANDVARSIVASDAEFEGRMKFLTRDIMEVKEQLGEYDCIF  207 (286)
Q Consensus       128 ~~~~~~VL~IG~G~lp~tai~lA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~g~l~~~i~f~~~D~~~~~~~l~~fD~V~  207 (286)
                      ..++.+|||||||+ |..++.+++.  ++++|+|+|+|+.+++.|++.++..| +.++++|+++|+.+++...+.||+|+
T Consensus        44 ~~~~~~vLDiGcG~-G~~~~~la~~--~~~~v~gvD~s~~~~~~a~~~~~~~~-~~~~v~~~~~d~~~~~~~~~~fD~i~  119 (267)
T 3kkz_A           44 LTEKSLIADIGCGT-GGQTMVLAGH--VTGQVTGLDFLSGFIDIFNRNARQSG-LQNRVTGIVGSMDDLPFRNEELDLIW  119 (267)
T ss_dssp             CCTTCEEEEETCTT-CHHHHHHHTT--CSSEEEEEESCHHHHHHHHHHHHHTT-CTTTEEEEECCTTSCCCCTTCEEEEE
T ss_pred             CCCCCEEEEeCCCC-CHHHHHHHhc--cCCEEEEEeCCHHHHHHHHHHHHHcC-CCcCcEEEEcChhhCCCCCCCEEEEE
Confidence            47889999999996 6677888873  77899999999999999999999999 78889999999988765556899999


Q ss_pred             hhhhccCChhHHHHHHHHHHhhccCCcEEEEee
Q 042119          208 LAALVGMSKEEKLTILGHIRKYMKDGGILLVRS  240 (286)
Q Consensus       208 ~aalvg~~~~~k~~vl~~l~~~l~pgg~lv~r~  240 (286)
                      ....+..-  +..++++++.+.|||||.+++.+
T Consensus       120 ~~~~~~~~--~~~~~l~~~~~~LkpgG~l~~~~  150 (267)
T 3kkz_A          120 SEGAIYNI--GFERGLNEWRKYLKKGGYLAVSE  150 (267)
T ss_dssp             ESSCGGGT--CHHHHHHHHGGGEEEEEEEEEEE
T ss_pred             EcCCceec--CHHHHHHHHHHHcCCCCEEEEEE
Confidence            66544222  46789999999999999999875

>3lcc_A Putative methyl chloride transferase; halide methyltransferase; HET: SAH; 1.80A {Arabidopsis thaliana}

Probab=99.59  E-value=8.8e-15  Score=128.04  Aligned_cols=106  Identities=18%  Similarity=0.221  Sum_probs=88.0

Q ss_pred             CCCCEEEEeccCCChhhHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEccccchhhcCCCcceeeh
Q 042119          129 VQPKKVAFVGSGPMPLTSIIMAKHHLTSTHFDNFDIDEAANDVARSIVASDAEFEGRMKFLTRDIMEVKEQLGEYDCIFL  208 (286)
Q Consensus       129 ~~~~~VL~IG~G~lp~tai~lA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~g~l~~~i~f~~~D~~~~~~~l~~fD~V~~  208 (286)
                      .++.+|||||||+ |..+..+++   ++.+|+|+|+|+.+++.|++.+...+ ...+++|+++|+.+.+. ...||+|+.
T Consensus        65 ~~~~~vLDiGcG~-G~~~~~l~~---~~~~v~gvD~s~~~~~~a~~~~~~~~-~~~~v~~~~~d~~~~~~-~~~fD~v~~  138 (235)
T 3lcc_A           65 LPLGRALVPGCGG-GHDVVAMAS---PERFVVGLDISESALAKANETYGSSP-KAEYFSFVKEDVFTWRP-TELFDLIFD  138 (235)
T ss_dssp             SCCEEEEEETCTT-CHHHHHHCB---TTEEEEEECSCHHHHHHHHHHHTTSG-GGGGEEEECCCTTTCCC-SSCEEEEEE
T ss_pred             CCCCCEEEeCCCC-CHHHHHHHh---CCCeEEEEECCHHHHHHHHHHhhccC-CCcceEEEECchhcCCC-CCCeeEEEE
Confidence            3456999999996 666677877   78999999999999999999988766 56789999999988653 347999986


Q ss_pred             hhhc-cCChhHHHHHHHHHHhhccCCcEEEEee
Q 042119          209 AALV-GMSKEEKLTILGHIRKYMKDGGILLVRS  240 (286)
Q Consensus       209 aalv-g~~~~~k~~vl~~l~~~l~pgg~lv~r~  240 (286)
                      .... .++.++...+++++.+.|+|||.+++..
T Consensus       139 ~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~  171 (235)
T 3lcc_A          139 YVFFCAIEPEMRPAWAKSMYELLKPDGELITLM  171 (235)
T ss_dssp             ESSTTTSCGGGHHHHHHHHHHHEEEEEEEEEEE
T ss_pred             ChhhhcCCHHHHHHHHHHHHHHCCCCcEEEEEE
Confidence            5443 4455688899999999999999999865

>1nkv_A Hypothetical protein YJHP; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.90A {Escherichia coli} SCOP: c.66.1.21

Probab=99.59  E-value=5.2e-15  Score=130.54  Aligned_cols=109  Identities=14%  Similarity=0.098  Sum_probs=90.2

Q ss_pred             cCCCCCCEEEEeccCCChhhHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEccccchhhcCCCcce
Q 042119          126 NGVVQPKKVAFVGSGPMPLTSIIMAKHHLTSTHFDNFDIDEAANDVARSIVASDAEFEGRMKFLTRDIMEVKEQLGEYDC  205 (286)
Q Consensus       126 ~~~~~~~~VL~IG~G~lp~tai~lA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~g~l~~~i~f~~~D~~~~~~~l~~fD~  205 (286)
                      ..+.++.+|||||||+ |..+..+|+.  .+++|+|+|+|+++++.|++.++..| +.++++|+++|+.+.+. .+.||+
T Consensus        32 ~~~~~~~~VLDiGcG~-G~~~~~la~~--~~~~v~gvD~s~~~l~~a~~~~~~~~-~~~~v~~~~~d~~~~~~-~~~fD~  106 (256)
T 1nkv_A           32 LRMKPGTRILDLGSGS-GEMLCTWARD--HGITGTGIDMSSLFTAQAKRRAEELG-VSERVHFIHNDAAGYVA-NEKCDV  106 (256)
T ss_dssp             TCCCTTCEEEEETCTT-CHHHHHHHHH--TCCEEEEEESCHHHHHHHHHHHHHTT-CTTTEEEEESCCTTCCC-SSCEEE
T ss_pred             cCCCCCCEEEEECCCC-CHHHHHHHHh--cCCeEEEEeCCHHHHHHHHHHHHhcC-CCcceEEEECChHhCCc-CCCCCE
Confidence            3567889999999997 5667778773  38899999999999999999999999 67799999999988765 467999


Q ss_pred             eehhhhccCChhHHHHHHHHHHhhccCCcEEEEee
Q 042119          206 IFLAALVGMSKEEKLTILGHIRKYMKDGGILLVRS  240 (286)
Q Consensus       206 V~~aalvg~~~~~k~~vl~~l~~~l~pgg~lv~r~  240 (286)
                      |+...... ...+..++++++.+.|||||.+++..
T Consensus       107 V~~~~~~~-~~~~~~~~l~~~~r~LkpgG~l~~~~  140 (256)
T 1nkv_A          107 AACVGATW-IAGGFAGAEELLAQSLKPGGIMLIGE  140 (256)
T ss_dssp             EEEESCGG-GTSSSHHHHHHHTTSEEEEEEEEEEE
T ss_pred             EEECCChH-hcCCHHHHHHHHHHHcCCCeEEEEec
Confidence            98643321 22356789999999999999999975

>3hm2_A Precorrin-6Y C5,15-methyltransferase; alpha-beta-sandwich, structural genomics, PSI-2, protein structure initiative; 2.21A {Corynebacterium diphtheriae}

Probab=99.58  E-value=1.3e-14  Score=120.71  Aligned_cols=108  Identities=16%  Similarity=0.156  Sum_probs=88.2

Q ss_pred             HhcCCCCCCEEEEeccCCChhhHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEccccchhhcC-CC
Q 042119          124 SENGVVQPKKVAFVGSGPMPLTSIIMAKHHLTSTHFDNFDIDEAANDVARSIVASDAEFEGRMKFLTRDIMEVKEQL-GE  202 (286)
Q Consensus       124 ~~~~~~~~~~VL~IG~G~lp~tai~lA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~g~l~~~i~f~~~D~~~~~~~l-~~  202 (286)
                      ....+.++.+|||||||+ |..++.+++ ..++.+|+++|+|+++++.|++.++..| +.+++ ++++|+.+..... +.
T Consensus        19 ~~~~~~~~~~vldiG~G~-G~~~~~l~~-~~~~~~v~~vD~~~~~~~~a~~~~~~~~-~~~~~-~~~~d~~~~~~~~~~~   94 (178)
T 3hm2_A           19 SALAPKPHETLWDIGGGS-GSIAIEWLR-STPQTTAVCFEISEERRERILSNAINLG-VSDRI-AVQQGAPRAFDDVPDN   94 (178)
T ss_dssp             HHHCCCTTEEEEEESTTT-THHHHHHHT-TSSSEEEEEECSCHHHHHHHHHHHHTTT-CTTSE-EEECCTTGGGGGCCSC
T ss_pred             HHhcccCCCeEEEeCCCC-CHHHHHHHH-HCCCCeEEEEeCCHHHHHHHHHHHHHhC-CCCCE-EEecchHhhhhccCCC
Confidence            344567889999999997 677777887 4679999999999999999999999999 66689 8899986544333 68


Q ss_pred             cceeehhhhccCChhHHHHHHHHHHhhccCCcEEEEee
Q 042119          203 YDCIFLAALVGMSKEEKLTILGHIRKYMKDGGILLVRS  240 (286)
Q Consensus       203 fD~V~~aalvg~~~~~k~~vl~~l~~~l~pgg~lv~r~  240 (286)
                      ||+|+.......     .++++++.+.|+|||.+++..
T Consensus        95 ~D~i~~~~~~~~-----~~~l~~~~~~L~~gG~l~~~~  127 (178)
T 3hm2_A           95 PDVIFIGGGLTA-----PGVFAAAWKRLPVGGRLVANA  127 (178)
T ss_dssp             CSEEEECC-TTC-----TTHHHHHHHTCCTTCEEEEEE
T ss_pred             CCEEEECCcccH-----HHHHHHHHHhcCCCCEEEEEe
Confidence            999997655432     579999999999999999865

>3f4k_A Putative methyltransferase; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.30A {Bacteroides thetaiotaomicron} PDB: 3t0i_A* 3svz_A* 3sxj_A*

Probab=99.58  E-value=8.4e-15  Score=129.27  Aligned_cols=107  Identities=18%  Similarity=0.207  Sum_probs=90.2

Q ss_pred             CCCCCEEEEeccCCChhhHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEccccchhhcCCCcceee
Q 042119          128 VVQPKKVAFVGSGPMPLTSIIMAKHHLTSTHFDNFDIDEAANDVARSIVASDAEFEGRMKFLTRDIMEVKEQLGEYDCIF  207 (286)
Q Consensus       128 ~~~~~~VL~IG~G~lp~tai~lA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~g~l~~~i~f~~~D~~~~~~~l~~fD~V~  207 (286)
                      ..++.+|||||||+ |..+..+++. . +.+|+|+|+|+.+++.|++.+...| +.++++|+++|+.+++...+.||+|+
T Consensus        44 ~~~~~~vLDiG~G~-G~~~~~l~~~-~-~~~v~~vD~s~~~~~~a~~~~~~~~-~~~~~~~~~~d~~~~~~~~~~fD~v~  119 (257)
T 3f4k_A           44 LTDDAKIADIGCGT-GGQTLFLADY-V-KGQITGIDLFPDFIEIFNENAVKAN-CADRVKGITGSMDNLPFQNEELDLIW  119 (257)
T ss_dssp             CCTTCEEEEETCTT-SHHHHHHHHH-C-CSEEEEEESCHHHHHHHHHHHHHTT-CTTTEEEEECCTTSCSSCTTCEEEEE
T ss_pred             CCCCCeEEEeCCCC-CHHHHHHHHh-C-CCeEEEEECCHHHHHHHHHHHHHcC-CCCceEEEECChhhCCCCCCCEEEEE
Confidence            46788999999996 6667778873 3 3599999999999999999999999 78889999999988776556899999


Q ss_pred             hhhhccCChhHHHHHHHHHHhhccCCcEEEEee
Q 042119          208 LAALVGMSKEEKLTILGHIRKYMKDGGILLVRS  240 (286)
Q Consensus       208 ~aalvg~~~~~k~~vl~~l~~~l~pgg~lv~r~  240 (286)
                      ....+.+-  +..++++++.+.|+|||++++.+
T Consensus       120 ~~~~l~~~--~~~~~l~~~~~~L~pgG~l~~~~  150 (257)
T 3f4k_A          120 SEGAIYNI--GFERGMNEWSKYLKKGGFIAVSE  150 (257)
T ss_dssp             EESCSCCC--CHHHHHHHHHTTEEEEEEEEEEE
T ss_pred             ecChHhhc--CHHHHHHHHHHHcCCCcEEEEEE
Confidence            76544332  46789999999999999999976

>3c3p_A Methyltransferase; NP_951602.1, structural genomics, joint for structural genomics, JCSG, protein structure initiative transferase; 1.90A {Geobacter sulfurreducens pca}

Probab=99.58  E-value=4.6e-15  Score=128.03  Aligned_cols=106  Identities=19%  Similarity=0.301  Sum_probs=89.3

Q ss_pred             CCCCEEEEeccCCChhhHHHHHhhcCC-CcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEccccchhhcCCCcceee
Q 042119          129 VQPKKVAFVGSGPMPLTSIIMAKHHLT-STHFDNFDIDEAANDVARSIVASDAEFEGRMKFLTRDIMEVKEQLGEYDCIF  207 (286)
Q Consensus       129 ~~~~~VL~IG~G~lp~tai~lA~~~~~-g~~V~~iDid~~ai~~Ar~~~~~~g~l~~~i~f~~~D~~~~~~~l~~fD~V~  207 (286)
                      .++++||+||||+ |.+++.+|+. .+ +++|+++|+|+++++.|++.++..| +.++++|+++|+.+....+.+||+||
T Consensus        55 ~~~~~vLdiG~G~-G~~~~~la~~-~~~~~~v~~vD~~~~~~~~a~~~~~~~~-~~~~v~~~~~d~~~~~~~~~~fD~v~  131 (210)
T 3c3p_A           55 KQPQLVVVPGDGL-GCASWWFARA-ISISSRVVMIDPDRDNVEHARRMLHDNG-LIDRVELQVGDPLGIAAGQRDIDILF  131 (210)
T ss_dssp             HCCSEEEEESCGG-GHHHHHHHTT-SCTTCEEEEEESCHHHHHHHHHHHHHHS-GGGGEEEEESCHHHHHTTCCSEEEEE
T ss_pred             hCCCEEEEEcCCc-cHHHHHHHHh-CCCCCEEEEEECCHHHHHHHHHHHHHCC-CCceEEEEEecHHHHhccCCCCCEEE
Confidence            3678999999995 8888999983 45 8999999999999999999999999 67889999999987543332299999


Q ss_pred             hhhhccCChhHHHHHHHHHHhhccCCcEEEEeec
Q 042119          208 LAALVGMSKEEKLTILGHIRKYMKDGGILLVRSA  241 (286)
Q Consensus       208 ~aalvg~~~~~k~~vl~~l~~~l~pgg~lv~r~~  241 (286)
                      .++..    .....+++.+.+.|+|||++++.+.
T Consensus       132 ~~~~~----~~~~~~l~~~~~~LkpgG~lv~~~~  161 (210)
T 3c3p_A          132 MDCDV----FNGADVLERMNRCLAKNALLIAVNA  161 (210)
T ss_dssp             EETTT----SCHHHHHHHHGGGEEEEEEEEEESS
T ss_pred             EcCCh----hhhHHHHHHHHHhcCCCeEEEEECc
Confidence            87543    5667899999999999999999763

>3u81_A Catechol O-methyltransferase; neurotransmitter degradation, transferase transferase inhibitor complex; HET: SAH; 1.13A {Rattus norvegicus} SCOP: c.66.1.1 PDB: 3nwe_A* 3oe5_A* 3ozr_A* 3oe4_A* 3ozt_A* 3ozs_A* 3r6t_A* 3hvi_A* 1jr4_A* 1vid_A* 1h1d_A* 2cl5_A* 3hvh_A* 3hvj_A* 3hvk_A* 3nw9_A* 3nwb_A* 3s68_A* 2zlb_A 2zth_A* ...

Probab=99.58  E-value=5.8e-15  Score=128.67  Aligned_cols=109  Identities=15%  Similarity=0.243  Sum_probs=88.3

Q ss_pred             CCCCEEEEeccCCChhhHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEccccchhhcC------CC
Q 042119          129 VQPKKVAFVGSGPMPLTSIIMAKHHLTSTHFDNFDIDEAANDVARSIVASDAEFEGRMKFLTRDIMEVKEQL------GE  202 (286)
Q Consensus       129 ~~~~~VL~IG~G~lp~tai~lA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~g~l~~~i~f~~~D~~~~~~~l------~~  202 (286)
                      .++++||+||||+ |.+++.+|+...++++|+++|+|+++++.|++.++..| +.++++|+++|+.+....+      +.
T Consensus        57 ~~~~~vLdiG~G~-G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~-~~~~v~~~~~d~~~~l~~~~~~~~~~~  134 (221)
T 3u81_A           57 YSPSLVLELGAYC-GYSAVRMARLLQPGARLLTMEINPDCAAITQQMLNFAG-LQDKVTILNGASQDLIPQLKKKYDVDT  134 (221)
T ss_dssp             HCCSEEEEECCTT-SHHHHHHHTTSCTTCEEEEEESCHHHHHHHHHHHHHHT-CGGGEEEEESCHHHHGGGTTTTSCCCC
T ss_pred             cCCCEEEEECCCC-CHHHHHHHHhCCCCCEEEEEeCChHHHHHHHHHHHHcC-CCCceEEEECCHHHHHHHHHHhcCCCc
Confidence            4678999999996 78889999843358999999999999999999999999 7788999999997754443      47


Q ss_pred             cceeehhhhccCChhHHHHHHHHHHhhccCCcEEEEeec
Q 042119          203 YDCIFLAALVGMSKEEKLTILGHIRKYMKDGGILLVRSA  241 (286)
Q Consensus       203 fD~V~~aalvg~~~~~k~~vl~~l~~~l~pgg~lv~r~~  241 (286)
                      ||+||+++.... ..+..++++.+ +.|+|||++++.+.
T Consensus       135 fD~V~~d~~~~~-~~~~~~~~~~~-~~LkpgG~lv~~~~  171 (221)
T 3u81_A          135 LDMVFLDHWKDR-YLPDTLLLEKC-GLLRKGTVLLADNV  171 (221)
T ss_dssp             CSEEEECSCGGG-HHHHHHHHHHT-TCCCTTCEEEESCC
T ss_pred             eEEEEEcCCccc-chHHHHHHHhc-cccCCCeEEEEeCC
Confidence            999998764321 13344677777 99999999999763

>3bus_A REBM, methyltransferase; rebeccamycin synthesis; HET: SAH; 2.65A {Lechevalieria aerocolonigenes}

Probab=99.58  E-value=2.3e-14  Score=127.74  Aligned_cols=114  Identities=14%  Similarity=0.249  Sum_probs=93.7

Q ss_pred             HHHhcCCCCCCEEEEeccCCChhhHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEccccchhhcCC
Q 042119          122 ILSENGVVQPKKVAFVGSGPMPLTSIIMAKHHLTSTHFDNFDIDEAANDVARSIVASDAEFEGRMKFLTRDIMEVKEQLG  201 (286)
Q Consensus       122 ~l~~~~~~~~~~VL~IG~G~lp~tai~lA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~g~l~~~i~f~~~D~~~~~~~l~  201 (286)
                      ++......++.+|||||||+ |..+..++++  .+++|+|+|+|+++++.|++.+...| +.++++|+++|+.+++...+
T Consensus        53 l~~~~~~~~~~~vLDiGcG~-G~~~~~l~~~--~~~~v~gvD~s~~~~~~a~~~~~~~~-~~~~~~~~~~d~~~~~~~~~  128 (273)
T 3bus_A           53 MIALLDVRSGDRVLDVGCGI-GKPAVRLATA--RDVRVTGISISRPQVNQANARATAAG-LANRVTFSYADAMDLPFEDA  128 (273)
T ss_dssp             HHHHSCCCTTCEEEEESCTT-SHHHHHHHHH--SCCEEEEEESCHHHHHHHHHHHHHTT-CTTTEEEEECCTTSCCSCTT
T ss_pred             HHHhcCCCCCCEEEEeCCCC-CHHHHHHHHh--cCCEEEEEeCCHHHHHHHHHHHHhcC-CCcceEEEECccccCCCCCC
Confidence            34455667889999999997 5566777773  48999999999999999999999999 67899999999988766556


Q ss_pred             CcceeehhhhccCChhHHHHHHHHHHhhccCCcEEEEee
Q 042119          202 EYDCIFLAALVGMSKEEKLTILGHIRKYMKDGGILLVRS  240 (286)
Q Consensus       202 ~fD~V~~aalvg~~~~~k~~vl~~l~~~l~pgg~lv~r~  240 (286)
                      .||+|+....+. +.+++..+++++.+.|||||.+++.+
T Consensus       129 ~fD~v~~~~~l~-~~~~~~~~l~~~~~~L~pgG~l~i~~  166 (273)
T 3bus_A          129 SFDAVWALESLH-HMPDRGRALREMARVLRPGGTVAIAD  166 (273)
T ss_dssp             CEEEEEEESCTT-TSSCHHHHHHHHHTTEEEEEEEEEEE
T ss_pred             CccEEEEechhh-hCCCHHHHHHHHHHHcCCCeEEEEEE
Confidence            899998654432 22466789999999999999999876

>3dlc_A Putative S-adenosyl-L-methionine-dependent methyltransferase; structural genomics, joint center for structural genomics; HET: MSE SAM; 1.15A {Methanococcus maripaludis}

Probab=99.57  E-value=9.8e-15  Score=124.79  Aligned_cols=108  Identities=22%  Similarity=0.319  Sum_probs=90.0

Q ss_pred             CCCCCCEEEEeccCCChhhHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEccccchhhcCCCccee
Q 042119          127 GVVQPKKVAFVGSGPMPLTSIIMAKHHLTSTHFDNFDIDEAANDVARSIVASDAEFEGRMKFLTRDIMEVKEQLGEYDCI  206 (286)
Q Consensus       127 ~~~~~~~VL~IG~G~lp~tai~lA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~g~l~~~i~f~~~D~~~~~~~l~~fD~V  206 (286)
                      ...++ +|||||||+ |..+..++++  ++.+|+++|+|+++++.|++.+...| +..+++|+++|+.+++...+.||+|
T Consensus        41 ~~~~~-~vLdiG~G~-G~~~~~l~~~--~~~~v~~~D~s~~~~~~a~~~~~~~~-~~~~~~~~~~d~~~~~~~~~~~D~v  115 (219)
T 3dlc_A           41 GITAG-TCIDIGSGP-GALSIALAKQ--SDFSIRALDFSKHMNEIALKNIADAN-LNDRIQIVQGDVHNIPIEDNYADLI  115 (219)
T ss_dssp             CCCEE-EEEEETCTT-SHHHHHHHHH--SEEEEEEEESCHHHHHHHHHHHHHTT-CTTTEEEEECBTTBCSSCTTCEEEE
T ss_pred             CCCCC-EEEEECCCC-CHHHHHHHHc--CCCeEEEEECCHHHHHHHHHHHHhcc-ccCceEEEEcCHHHCCCCcccccEE
Confidence            33444 999999997 6667778773  78999999999999999999999999 6789999999998877655689999


Q ss_pred             ehhhhccCChhHHHHHHHHHHhhccCCcEEEEee
Q 042119          207 FLAALVGMSKEEKLTILGHIRKYMKDGGILLVRS  240 (286)
Q Consensus       207 ~~aalvg~~~~~k~~vl~~l~~~l~pgg~lv~r~  240 (286)
                      +......+ .++..++++++.+.|+|||.+++.+
T Consensus       116 ~~~~~l~~-~~~~~~~l~~~~~~L~pgG~l~~~~  148 (219)
T 3dlc_A          116 VSRGSVFF-WEDVATAFREIYRILKSGGKTYIGG  148 (219)
T ss_dssp             EEESCGGG-CSCHHHHHHHHHHHEEEEEEEEEEE
T ss_pred             EECchHhh-ccCHHHHHHHHHHhCCCCCEEEEEe
Confidence            97654322 2567789999999999999999975

>3m70_A Tellurite resistance protein TEHB homolog; structural genomics, PSI-2, protein ST initiative; 1.95A {Haemophilus influenzae}

Probab=99.57  E-value=4.4e-14  Score=127.22  Aligned_cols=104  Identities=17%  Similarity=0.255  Sum_probs=87.4

Q ss_pred             CCCCEEEEeccCCChhhHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEccccchhhcCCCcceeeh
Q 042119          129 VQPKKVAFVGSGPMPLTSIIMAKHHLTSTHFDNFDIDEAANDVARSIVASDAEFEGRMKFLTRDIMEVKEQLGEYDCIFL  208 (286)
Q Consensus       129 ~~~~~VL~IG~G~lp~tai~lA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~g~l~~~i~f~~~D~~~~~~~l~~fD~V~~  208 (286)
                      .++.+|||||||+ |..+..+++   .|.+|+|+|+|+.+++.|++.+...| +  +++|+++|+.+.+. .+.||+|+.
T Consensus       119 ~~~~~vLD~GcG~-G~~~~~l~~---~g~~v~~vD~s~~~~~~a~~~~~~~~-~--~~~~~~~d~~~~~~-~~~fD~i~~  190 (286)
T 3m70_A          119 ISPCKVLDLGCGQ-GRNSLYLSL---LGYDVTSWDHNENSIAFLNETKEKEN-L--NISTALYDINAANI-QENYDFIVS  190 (286)
T ss_dssp             SCSCEEEEESCTT-CHHHHHHHH---TTCEEEEEESCHHHHHHHHHHHHHTT-C--CEEEEECCGGGCCC-CSCEEEEEE
T ss_pred             cCCCcEEEECCCC-CHHHHHHHH---CCCeEEEEECCHHHHHHHHHHHHHcC-C--ceEEEEeccccccc-cCCccEEEE
Confidence            4789999999996 666778888   48899999999999999999999988 4  89999999987655 457999987


Q ss_pred             hhhc-cCChhHHHHHHHHHHhhccCCcEEEEee
Q 042119          209 AALV-GMSKEEKLTILGHIRKYMKDGGILLVRS  240 (286)
Q Consensus       209 aalv-g~~~~~k~~vl~~l~~~l~pgg~lv~r~  240 (286)
                      .... ..+.+....+++++.+.|+|||.+++..
T Consensus       191 ~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~  223 (286)
T 3m70_A          191 TVVFMFLNRERVPSIIKNMKEHTNVGGYNLIVA  223 (286)
T ss_dssp             CSSGGGSCGGGHHHHHHHHHHTEEEEEEEEEEE
T ss_pred             ccchhhCCHHHHHHHHHHHHHhcCCCcEEEEEE
Confidence            6443 3455677799999999999999977654

>3eey_A Putative rRNA methylase; rRNA methylation, S-adenosyl-methionine, structural genomics structure initiative, PSI; HET: SAM; 2.20A {Clostridium thermocellum atcc 27405}

Probab=99.57  E-value=3.1e-14  Score=121.11  Aligned_cols=113  Identities=13%  Similarity=0.119  Sum_probs=90.2

Q ss_pred             CCCCCCEEEEeccCCChhhHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEccccchhhcC-CCcce
Q 042119          127 GVVQPKKVAFVGSGPMPLTSIIMAKHHLTSTHFDNFDIDEAANDVARSIVASDAEFEGRMKFLTRDIMEVKEQL-GEYDC  205 (286)
Q Consensus       127 ~~~~~~~VL~IG~G~lp~tai~lA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~g~l~~~i~f~~~D~~~~~~~l-~~fD~  205 (286)
                      ...++.+|||+|||+ |..++.++++..++++|+++|+|+++++.|++.++..| +.++++|+++|+.+++... +.||+
T Consensus        19 ~~~~~~~vLDlGcG~-G~~~~~l~~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~-~~~~v~~~~~d~~~~~~~~~~~fD~   96 (197)
T 3eey_A           19 FVKEGDTVVDATCGN-GNDTAFLASLVGENGRVFGFDIQDKAIANTTKKLTDLN-LIDRVTLIKDGHQNMDKYIDCPVKA   96 (197)
T ss_dssp             HCCTTCEEEESCCTT-SHHHHHHHHHHCTTCEEEEECSCHHHHHHHHHHHHHTT-CGGGEEEECSCGGGGGGTCCSCEEE
T ss_pred             cCCCCCEEEEcCCCC-CHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcC-CCCCeEEEECCHHHHhhhccCCceE
Confidence            457789999999997 56667777743366899999999999999999999998 6789999999998876333 57999


Q ss_pred             eehhhhc--------cCChhHHHHHHHHHHhhccCCcEEEEeec
Q 042119          206 IFLAALV--------GMSKEEKLTILGHIRKYMKDGGILLVRSA  241 (286)
Q Consensus       206 V~~aalv--------g~~~~~k~~vl~~l~~~l~pgg~lv~r~~  241 (286)
                      |+.....        ....+...++++++.+.|+|||++++...
T Consensus        97 v~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Lk~gG~l~~~~~  140 (197)
T 3eey_A           97 VMFNLGYLPSGDHSISTRPETTIQALSKAMELLVTGGIITVVIY  140 (197)
T ss_dssp             EEEEESBCTTSCTTCBCCHHHHHHHHHHHHHHEEEEEEEEEEEC
T ss_pred             EEEcCCcccCcccccccCcccHHHHHHHHHHhCcCCCEEEEEEc
Confidence            9865321        11233556799999999999999998763

>3jwh_A HEN1; methyltransferase; HET: SAH; 2.20A {Anabaena variabilis} PDB: 3jwj_A

Probab=99.57  E-value=1.6e-14  Score=124.81  Aligned_cols=109  Identities=9%  Similarity=0.149  Sum_probs=88.1

Q ss_pred             CCCCEEEEeccCCChhhHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCC----CeEEEEccccchhhcCCCcc
Q 042119          129 VQPKKVAFVGSGPMPLTSIIMAKHHLTSTHFDNFDIDEAANDVARSIVASDAEFEG----RMKFLTRDIMEVKEQLGEYD  204 (286)
Q Consensus       129 ~~~~~VL~IG~G~lp~tai~lA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~g~l~~----~i~f~~~D~~~~~~~l~~fD  204 (286)
                      .++.+|||||||+ |..+..+++ ..+..+|+|+|+|+++++.|++.+...| +.+    +++|+++|+...+...+.||
T Consensus        28 ~~~~~vLDiGcG~-G~~~~~l~~-~~~~~~v~gvD~s~~~~~~a~~~~~~~~-~~~~~~~~v~~~~~d~~~~~~~~~~fD  104 (217)
T 3jwh_A           28 SNARRVIDLGCGQ-GNLLKILLK-DSFFEQITGVDVSYRSLEIAQERLDRLR-LPRNQWERLQLIQGALTYQDKRFHGYD  104 (217)
T ss_dssp             TTCCEEEEETCTT-CHHHHHHHH-CTTCSEEEEEESCHHHHHHHHHHHTTCC-CCHHHHTTEEEEECCTTSCCGGGCSCS
T ss_pred             cCCCEEEEeCCCC-CHHHHHHHh-hCCCCEEEEEECCHHHHHHHHHHHHHhc-CCcccCcceEEEeCCcccccccCCCcC
Confidence            5678999999997 556677777 3556899999999999999999998887 554    89999999866555556899


Q ss_pred             eeehhhhc-cCChhHHHHHHHHHHhhccCCcEEEEee
Q 042119          205 CIFLAALV-GMSKEEKLTILGHIRKYMKDGGILLVRS  240 (286)
Q Consensus       205 ~V~~aalv-g~~~~~k~~vl~~l~~~l~pgg~lv~r~  240 (286)
                      +|+....+ .++.++..++++++.+.|||||+++...
T Consensus       105 ~v~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~li~~~  141 (217)
T 3jwh_A          105 AATVIEVIEHLDLSRLGAFERVLFEFAQPKIVIVTTP  141 (217)
T ss_dssp             EEEEESCGGGCCHHHHHHHHHHHHTTTCCSEEEEEEE
T ss_pred             EEeeHHHHHcCCHHHHHHHHHHHHHHcCCCEEEEEcc
Confidence            99965544 4455566899999999999999877754

>3g5t_A Trans-aconitate 3-methyltransferase; structural genomics, protein structure initiative, PSI, center for eukaryotic structural genomics; HET: MSE SAH T8N; 1.12A {Saccharomyces cerevisiae}

Probab=99.57  E-value=1.8e-14  Score=130.96  Aligned_cols=112  Identities=14%  Similarity=0.081  Sum_probs=91.5

Q ss_pred             HHhcCCCCCCEEEEeccCCChhhHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhc-CCCCCCeEEEEccccchhhcC-
Q 042119          123 LSENGVVQPKKVAFVGSGPMPLTSIIMAKHHLTSTHFDNFDIDEAANDVARSIVASD-AEFEGRMKFLTRDIMEVKEQL-  200 (286)
Q Consensus       123 l~~~~~~~~~~VL~IG~G~lp~tai~lA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~-g~l~~~i~f~~~D~~~~~~~l-  200 (286)
                      +......++.+|||||||+ |..+..+++...++.+|+|+|+|+.+++.|++.++.. | ...+++|+++|+.+++... 
T Consensus        29 l~~~~~~~~~~vLDiGcG~-G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~-~~~~v~~~~~d~~~~~~~~~  106 (299)
T 3g5t_A           29 IDEYHDGERKLLVDVGCGP-GTATLQMAQELKPFEQIIGSDLSATMIKTAEVIKEGSPD-TYKNVSFKISSSDDFKFLGA  106 (299)
T ss_dssp             HHHHCCSCCSEEEEETCTT-THHHHHHHHHSSCCSEEEEEESCHHHHHHHHHHHHHCC--CCTTEEEEECCTTCCGGGCT
T ss_pred             HHHHhcCCCCEEEEECCCC-CHHHHHHHHhCCCCCEEEEEeCCHHHHHHHHHHHHhccC-CCCceEEEEcCHHhCCcccc
Confidence            3344456889999999996 6677788862228999999999999999999999987 4 4579999999999877665 


Q ss_pred             -----CCcceeehhhhccCChhHHHHHHHHHHhhccCCcEEEE
Q 042119          201 -----GEYDCIFLAALVGMSKEEKLTILGHIRKYMKDGGILLV  238 (286)
Q Consensus       201 -----~~fD~V~~aalvg~~~~~k~~vl~~l~~~l~pgg~lv~  238 (286)
                           +.||+|+....+++-  +..++++++.+.|+|||.+++
T Consensus       107 ~~~~~~~fD~V~~~~~l~~~--~~~~~l~~~~~~LkpgG~l~i  147 (299)
T 3g5t_A          107 DSVDKQKIDMITAVECAHWF--DFEKFQRSAYANLRKDGTIAI  147 (299)
T ss_dssp             TTTTSSCEEEEEEESCGGGS--CHHHHHHHHHHHEEEEEEEEE
T ss_pred             ccccCCCeeEEeHhhHHHHh--CHHHHHHHHHHhcCCCcEEEE
Confidence                 689999976544333  677899999999999999988

>1y8c_A S-adenosylmethionine-dependent methyltransferase; structural genomics, protein structure initiative, PSI; 2.50A {Clostridium acetobutylicum} SCOP: c.66.1.43

Probab=99.57  E-value=4.6e-14  Score=122.88  Aligned_cols=103  Identities=11%  Similarity=0.149  Sum_probs=85.8

Q ss_pred             CCCCEEEEeccCCChhhHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEccccchhhcCCCcceeeh
Q 042119          129 VQPKKVAFVGSGPMPLTSIIMAKHHLTSTHFDNFDIDEAANDVARSIVASDAEFEGRMKFLTRDIMEVKEQLGEYDCIFL  208 (286)
Q Consensus       129 ~~~~~VL~IG~G~lp~tai~lA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~g~l~~~i~f~~~D~~~~~~~l~~fD~V~~  208 (286)
                      .++.+||+||||+ |..+..+++   .+.+|+++|+|+.+++.|++.....| +  +++|+++|+.+.+.+ +.||+|+.
T Consensus        36 ~~~~~vLdiG~G~-G~~~~~l~~---~~~~~~~~D~s~~~~~~a~~~~~~~~-~--~~~~~~~d~~~~~~~-~~fD~v~~  107 (246)
T 1y8c_A           36 LVFDDYLDLACGT-GNLTENLCP---KFKNTWAVDLSQEMLSEAENKFRSQG-L--KPRLACQDISNLNIN-RKFDLITC  107 (246)
T ss_dssp             CCTTEEEEETCTT-STTHHHHGG---GSSEEEEECSCHHHHHHHHHHHHHTT-C--CCEEECCCGGGCCCS-CCEEEEEE
T ss_pred             CCCCeEEEeCCCC-CHHHHHHHH---CCCcEEEEECCHHHHHHHHHHHhhcC-C--CeEEEecccccCCcc-CCceEEEE
Confidence            4778999999997 556677877   47899999999999999999998877 3  799999999886655 68999997


Q ss_pred             hh-hc-cC-ChhHHHHHHHHHHhhccCCcEEEEe
Q 042119          209 AA-LV-GM-SKEEKLTILGHIRKYMKDGGILLVR  239 (286)
Q Consensus       209 aa-lv-g~-~~~~k~~vl~~l~~~l~pgg~lv~r  239 (286)
                      .. .+ .+ +.++..++++++.+.|+|||.+++.
T Consensus       108 ~~~~l~~~~~~~~~~~~l~~~~~~L~pgG~l~~~  141 (246)
T 1y8c_A          108 CLDSTNYIIDSDDLKKYFKAVSNHLKEGGVFIFD  141 (246)
T ss_dssp             CTTGGGGCCSHHHHHHHHHHHHTTEEEEEEEEEE
T ss_pred             cCccccccCCHHHHHHHHHHHHHhcCCCcEEEEE
Confidence            54 33 33 3367789999999999999999984

>1kpg_A CFA synthase;, cyclopropane-fatty-acyl-phospholipid synthase 1; mixed alpha beta fold, structural genomics, PSI; HET: SAH 16A; 2.00A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 1kp9_A* 1kph_A* 1tpy_A* 1l1e_A*

Probab=99.56  E-value=2.6e-14  Score=128.67  Aligned_cols=111  Identities=13%  Similarity=0.154  Sum_probs=91.1

Q ss_pred             HHhcCCCCCCEEEEeccCCChhhHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEccccchhhcCCC
Q 042119          123 LSENGVVQPKKVAFVGSGPMPLTSIIMAKHHLTSTHFDNFDIDEAANDVARSIVASDAEFEGRMKFLTRDIMEVKEQLGE  202 (286)
Q Consensus       123 l~~~~~~~~~~VL~IG~G~lp~tai~lA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~g~l~~~i~f~~~D~~~~~~~l~~  202 (286)
                      +......++.+|||||||+ |..+..+++.  .|.+|+|+|+|+++++.|++.+...| +.++++++++|+.+++   +.
T Consensus        57 ~~~~~~~~~~~vLDiGcG~-G~~~~~l~~~--~~~~v~gvd~s~~~~~~a~~~~~~~~-~~~~~~~~~~d~~~~~---~~  129 (287)
T 1kpg_A           57 LGKLGLQPGMTLLDVGCGW-GATMMRAVEK--YDVNVVGLTLSKNQANHVQQLVANSE-NLRSKRVLLAGWEQFD---EP  129 (287)
T ss_dssp             HTTTTCCTTCEEEEETCTT-SHHHHHHHHH--HCCEEEEEESCHHHHHHHHHHHHTCC-CCSCEEEEESCGGGCC---CC
T ss_pred             HHHcCCCCcCEEEEECCcc-cHHHHHHHHH--cCCEEEEEECCHHHHHHHHHHHHhcC-CCCCeEEEECChhhCC---CC
Confidence            3344567889999999997 5566777753  46799999999999999999999988 6789999999997654   68


Q ss_pred             cceeehhhhc-cCChhHHHHHHHHHHhhccCCcEEEEee
Q 042119          203 YDCIFLAALV-GMSKEEKLTILGHIRKYMKDGGILLVRS  240 (286)
Q Consensus       203 fD~V~~aalv-g~~~~~k~~vl~~l~~~l~pgg~lv~r~  240 (286)
                      ||+|+....+ .++.++...+++++.+.|||||.+++..
T Consensus       130 fD~v~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~  168 (287)
T 1kpg_A          130 VDRIVSIGAFEHFGHERYDAFFSLAHRLLPADGVMLLHT  168 (287)
T ss_dssp             CSEEEEESCGGGTCTTTHHHHHHHHHHHSCTTCEEEEEE
T ss_pred             eeEEEEeCchhhcChHHHHHHHHHHHHhcCCCCEEEEEE
Confidence            9999865433 3344677889999999999999999975

>3cbg_A O-methyltransferase; cyanobacterium; HET: SAH FER 4FE; 2.00A {Synechocystis SP}

Probab=99.56  E-value=9.1e-15  Score=128.95  Aligned_cols=107  Identities=19%  Similarity=0.231  Sum_probs=90.5

Q ss_pred             CCCCEEEEeccCCChhhHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEccccchhhcC------CC
Q 042119          129 VQPKKVAFVGSGPMPLTSIIMAKHHLTSTHFDNFDIDEAANDVARSIVASDAEFEGRMKFLTRDIMEVKEQL------GE  202 (286)
Q Consensus       129 ~~~~~VL~IG~G~lp~tai~lA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~g~l~~~i~f~~~D~~~~~~~l------~~  202 (286)
                      .++++||+|||| .|.+++.+|+...++++|+++|+|+++++.|++.++..| +.++++|+++|+.+....+      +.
T Consensus        71 ~~~~~vLdiG~G-~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~g-~~~~i~~~~~d~~~~l~~l~~~~~~~~  148 (232)
T 3cbg_A           71 TGAKQVLEIGVF-RGYSALAMALQLPPDGQIIACDQDPNATAIAKKYWQKAG-VAEKISLRLGPALATLEQLTQGKPLPE  148 (232)
T ss_dssp             HTCCEEEEECCT-TSHHHHHHHTTSCTTCEEEEEESCHHHHHHHHHHHHHHT-CGGGEEEEESCHHHHHHHHHTSSSCCC
T ss_pred             cCCCEEEEecCC-CCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcC-CCCcEEEEEcCHHHHHHHHHhcCCCCC
Confidence            467899999999 588999999842237899999999999999999999999 6778999999987643322      57


Q ss_pred             cceeehhhhccCChhHHHHHHHHHHhhccCCcEEEEeec
Q 042119          203 YDCIFLAALVGMSKEEKLTILGHIRKYMKDGGILLVRSA  241 (286)
Q Consensus       203 fD~V~~aalvg~~~~~k~~vl~~l~~~l~pgg~lv~r~~  241 (286)
                      ||+||+++.    .++...+++.+.+.|+|||++++.+.
T Consensus       149 fD~V~~d~~----~~~~~~~l~~~~~~LkpgG~lv~~~~  183 (232)
T 3cbg_A          149 FDLIFIDAD----KRNYPRYYEIGLNLLRRGGLMVIDNV  183 (232)
T ss_dssp             EEEEEECSC----GGGHHHHHHHHHHTEEEEEEEEEECT
T ss_pred             cCEEEECCC----HHHHHHHHHHHHHHcCCCeEEEEeCC
Confidence            999997754    36778899999999999999999863

>3hem_A Cyclopropane-fatty-acyl-phospholipid synthase 2; protein-ligand complex, cytoplasm, lipid synthesis, methyltransferase; HET: D22; 2.39A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 1kpi_A*

Probab=99.56  E-value=4e-14  Score=128.82  Aligned_cols=112  Identities=13%  Similarity=0.052  Sum_probs=91.7

Q ss_pred             HHHhcCCCCCCEEEEeccCCChhhHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEccccchhhcCC
Q 042119          122 ILSENGVVQPKKVAFVGSGPMPLTSIIMAKHHLTSTHFDNFDIDEAANDVARSIVASDAEFEGRMKFLTRDIMEVKEQLG  201 (286)
Q Consensus       122 ~l~~~~~~~~~~VL~IG~G~lp~tai~lA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~g~l~~~i~f~~~D~~~~~~~l~  201 (286)
                      .+....+.++.+|||||||+ |..++.++++  .|++|+|+|+|+++++.|++.+...| +.++++|+++|+.++   .+
T Consensus        64 ~~~~~~~~~~~~vLDiGcG~-G~~~~~la~~--~~~~v~gvD~s~~~~~~a~~~~~~~~-~~~~v~~~~~d~~~~---~~  136 (302)
T 3hem_A           64 ALDKLNLEPGMTLLDIGCGW-GSTMRHAVAE--YDVNVIGLTLSENQYAHDKAMFDEVD-SPRRKEVRIQGWEEF---DE  136 (302)
T ss_dssp             HHHTTCCCTTCEEEEETCTT-SHHHHHHHHH--HCCEEEEEECCHHHHHHHHHHHHHSC-CSSCEEEEECCGGGC---CC
T ss_pred             HHHHcCCCCcCEEEEeeccC-cHHHHHHHHh--CCCEEEEEECCHHHHHHHHHHHHhcC-CCCceEEEECCHHHc---CC
Confidence            34455568889999999997 5566778773  36999999999999999999999999 778999999999775   36


Q ss_pred             Ccceeehhhhc-cC-------ChhHHHHHHHHHHhhccCCcEEEEee
Q 042119          202 EYDCIFLAALV-GM-------SKEEKLTILGHIRKYMKDGGILLVRS  240 (286)
Q Consensus       202 ~fD~V~~aalv-g~-------~~~~k~~vl~~l~~~l~pgg~lv~r~  240 (286)
                      .||+|+....+ .+       ..+....+++++.+.|||||++++.+
T Consensus       137 ~fD~v~~~~~~~~~~d~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~  183 (302)
T 3hem_A          137 PVDRIVSLGAFEHFADGAGDAGFERYDTFFKKFYNLTPDDGRMLLHT  183 (302)
T ss_dssp             CCSEEEEESCGGGTTCCSSCCCTTHHHHHHHHHHHSSCTTCEEEEEE
T ss_pred             CccEEEEcchHHhcCccccccchhHHHHHHHHHHHhcCCCcEEEEEE
Confidence            89999865433 33       22556789999999999999999976

>1vl5_A Unknown conserved protein BH2331; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; HET: MSE; 1.95A {Bacillus halodurans} SCOP: c.66.1.41

Probab=99.56  E-value=1.5e-14  Score=128.46  Aligned_cols=108  Identities=15%  Similarity=0.199  Sum_probs=87.7

Q ss_pred             cCCCCCCEEEEeccCCChhhHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEccccchhhcCCCcce
Q 042119          126 NGVVQPKKVAFVGSGPMPLTSIIMAKHHLTSTHFDNFDIDEAANDVARSIVASDAEFEGRMKFLTRDIMEVKEQLGEYDC  205 (286)
Q Consensus       126 ~~~~~~~~VL~IG~G~lp~tai~lA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~g~l~~~i~f~~~D~~~~~~~l~~fD~  205 (286)
                      ....++.+|||||||+ |..+..+++   .+.+|+++|+|+++++.|++.++..|.  .+++|+++|+.+++...+.||+
T Consensus        33 l~~~~~~~vLDiGcG~-G~~~~~l~~---~~~~v~gvD~s~~~l~~a~~~~~~~~~--~~v~~~~~d~~~l~~~~~~fD~  106 (260)
T 1vl5_A           33 AALKGNEEVLDVATGG-GHVANAFAP---FVKKVVAFDLTEDILKVARAFIEGNGH--QQVEYVQGDAEQMPFTDERFHI  106 (260)
T ss_dssp             HTCCSCCEEEEETCTT-CHHHHHHGG---GSSEEEEEESCHHHHHHHHHHHHHTTC--CSEEEEECCC-CCCSCTTCEEE
T ss_pred             hCCCCCCEEEEEeCCC-CHHHHHHHH---hCCEEEEEeCCHHHHHHHHHHHHhcCC--CceEEEEecHHhCCCCCCCEEE
Confidence            3457889999999996 566677877   346999999999999999999998883  5799999999887765568999


Q ss_pred             eehhhhccCChhHHHHHHHHHHhhccCCcEEEEee
Q 042119          206 IFLAALVGMSKEEKLTILGHIRKYMKDGGILLVRS  240 (286)
Q Consensus       206 V~~aalvg~~~~~k~~vl~~l~~~l~pgg~lv~r~  240 (286)
                      |+....+.+ .++...++.++.+.|||||.+++.+
T Consensus       107 V~~~~~l~~-~~d~~~~l~~~~r~LkpgG~l~~~~  140 (260)
T 1vl5_A          107 VTCRIAAHH-FPNPASFVSEAYRVLKKGGQLLLVD  140 (260)
T ss_dssp             EEEESCGGG-CSCHHHHHHHHHHHEEEEEEEEEEE
T ss_pred             EEEhhhhHh-cCCHHHHHHHHHHHcCCCCEEEEEE
Confidence            996643322 2466789999999999999999864

>2p8j_A S-adenosylmethionine-dependent methyltransferase; NP_349143.1; HET: PGE GOL; 2.00A {Clostridium acetobutylicum}

Probab=99.55  E-value=2e-14  Score=122.85  Aligned_cols=106  Identities=14%  Similarity=0.167  Sum_probs=88.1

Q ss_pred             CCCCEEEEeccCCChhhHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEccccchhhcCCCcceeeh
Q 042119          129 VQPKKVAFVGSGPMPLTSIIMAKHHLTSTHFDNFDIDEAANDVARSIVASDAEFEGRMKFLTRDIMEVKEQLGEYDCIFL  208 (286)
Q Consensus       129 ~~~~~VL~IG~G~lp~tai~lA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~g~l~~~i~f~~~D~~~~~~~l~~fD~V~~  208 (286)
                      .++.+|||||||++..+...+++   +|.+|+++|+|+++++.|++.+...+   .+++++++|+.+.+...+.||+|+.
T Consensus        22 ~~~~~vLDiGcG~G~~~~~~~~~---~~~~v~~vD~s~~~~~~a~~~~~~~~---~~~~~~~~d~~~~~~~~~~fD~v~~   95 (209)
T 2p8j_A           22 NLDKTVLDCGAGGDLPPLSIFVE---DGYKTYGIEISDLQLKKAENFSRENN---FKLNISKGDIRKLPFKDESMSFVYS   95 (209)
T ss_dssp             SSCSEEEEESCCSSSCTHHHHHH---TTCEEEEEECCHHHHHHHHHHHHHHT---CCCCEEECCTTSCCSCTTCEEEEEE
T ss_pred             CCCCEEEEECCCCCHHHHHHHHh---CCCEEEEEECCHHHHHHHHHHHHhcC---CceEEEECchhhCCCCCCceeEEEE
Confidence            56789999999976555666666   78999999999999999999998877   4799999999886655567999986


Q ss_pred             hhhc-cCChhHHHHHHHHHHhhccCCcEEEEee
Q 042119          209 AALV-GMSKEEKLTILGHIRKYMKDGGILLVRS  240 (286)
Q Consensus       209 aalv-g~~~~~k~~vl~~l~~~l~pgg~lv~r~  240 (286)
                      .... +++.++..++++++.+.|+|||.+++..
T Consensus        96 ~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~  128 (209)
T 2p8j_A           96 YGTIFHMRKNDVKEAIDEIKRVLKPGGLACINF  128 (209)
T ss_dssp             CSCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred             cChHHhCCHHHHHHHHHHHHHHcCCCcEEEEEE
Confidence            5332 4455788899999999999999999875

>3g2m_A PCZA361.24; SAM-dependent methyltransferase, glycopeptide antibiotics biosynthesis, structural genomics; 2.00A {Amycolatopsis orientalis} PDB: 3g2o_A* 3g2p_A* 3g2q_A*

Probab=99.55  E-value=1.9e-14  Score=130.78  Aligned_cols=106  Identities=9%  Similarity=0.182  Sum_probs=86.9

Q ss_pred             CCCCEEEEeccCCChhhHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCC--CCeEEEEccccchhhcCCCccee
Q 042119          129 VQPKKVAFVGSGPMPLTSIIMAKHHLTSTHFDNFDIDEAANDVARSIVASDAEFE--GRMKFLTRDIMEVKEQLGEYDCI  206 (286)
Q Consensus       129 ~~~~~VL~IG~G~lp~tai~lA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~g~l~--~~i~f~~~D~~~~~~~l~~fD~V  206 (286)
                      .++.+|||||||+ |..+..+++   .|.+|+|+|+|+.+++.|++.+...| +.  .+++|+++|+.+++. .+.||+|
T Consensus        81 ~~~~~vLDlGcG~-G~~~~~l~~---~~~~v~gvD~s~~~~~~a~~~~~~~~-~~~~~~v~~~~~d~~~~~~-~~~fD~v  154 (299)
T 3g2m_A           81 PVSGPVLELAAGM-GRLTFPFLD---LGWEVTALELSTSVLAAFRKRLAEAP-ADVRDRCTLVQGDMSAFAL-DKRFGTV  154 (299)
T ss_dssp             CCCSCEEEETCTT-TTTHHHHHT---TTCCEEEEESCHHHHHHHHHHHHTSC-HHHHTTEEEEECBTTBCCC-SCCEEEE
T ss_pred             CCCCcEEEEeccC-CHHHHHHHH---cCCeEEEEECCHHHHHHHHHHHhhcc-cccccceEEEeCchhcCCc-CCCcCEE
Confidence            4456999999996 667788887   48899999999999999999998876 33  689999999988665 3579988


Q ss_pred             ehh-hhc-cCChhHHHHHHHHHHhhccCCcEEEEee
Q 042119          207 FLA-ALV-GMSKEEKLTILGHIRKYMKDGGILLVRS  240 (286)
Q Consensus       207 ~~a-alv-g~~~~~k~~vl~~l~~~l~pgg~lv~r~  240 (286)
                      ++. ... ..+.++..++++++.+.|+|||++++..
T Consensus       155 ~~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~  190 (299)
T 3g2m_A          155 VISSGSINELDEADRRGLYASVREHLEPGGKFLLSL  190 (299)
T ss_dssp             EECHHHHTTSCHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred             EECCcccccCCHHHHHHHHHHHHHHcCCCcEEEEEe
Confidence            754 323 3355567899999999999999999965

>1x19_A CRTF-related protein; methyltransferase, bacteriochllochlorophyll, BCHU, SAM, SAH, adenosylmethyonine, S-adenosylhomocysteine, ADO-Met; 2.27A {Chlorobium tepidum} PDB: 1x1a_A* 1x1b_A* 1x1c_A* 1x1d_A*

Probab=99.55  E-value=1.3e-13  Score=128.73  Aligned_cols=112  Identities=22%  Similarity=0.272  Sum_probs=91.4

Q ss_pred             HHhcCCCCCCEEEEeccCCChhhHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEccccchhhcCCC
Q 042119          123 LSENGVVQPKKVAFVGSGPMPLTSIIMAKHHLTSTHFDNFDIDEAANDVARSIVASDAEFEGRMKFLTRDIMEVKEQLGE  202 (286)
Q Consensus       123 l~~~~~~~~~~VL~IG~G~lp~tai~lA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~g~l~~~i~f~~~D~~~~~~~l~~  202 (286)
                      +......++.+|||||||+ |..+..+++ .+|+.+++++|+ +++++.|++.++..| +.++++|+.+|+.+.+  ..+
T Consensus       183 ~~~~~~~~~~~vLDvG~G~-G~~~~~l~~-~~p~~~~~~~D~-~~~~~~a~~~~~~~~-~~~~v~~~~~d~~~~~--~~~  256 (359)
T 1x19_A          183 LEEAKLDGVKKMIDVGGGI-GDISAAMLK-HFPELDSTILNL-PGAIDLVNENAAEKG-VADRMRGIAVDIYKES--YPE  256 (359)
T ss_dssp             HHHCCCTTCCEEEEESCTT-CHHHHHHHH-HCTTCEEEEEEC-GGGHHHHHHHHHHTT-CTTTEEEEECCTTTSC--CCC
T ss_pred             HHhcCCCCCCEEEEECCcc-cHHHHHHHH-HCCCCeEEEEec-HHHHHHHHHHHHhcC-CCCCEEEEeCccccCC--CCC
Confidence            3344557889999999997 556677777 478999999999 999999999999988 6788999999997643  345


Q ss_pred             cceeehhhhc-cCChhHHHHHHHHHHhhccCCcEEEEee
Q 042119          203 YDCIFLAALV-GMSKEEKLTILGHIRKYMKDGGILLVRS  240 (286)
Q Consensus       203 fD~V~~aalv-g~~~~~k~~vl~~l~~~l~pgg~lv~r~  240 (286)
                      +|+|+..... .++.+...++++++.+.|+|||.+++.+
T Consensus       257 ~D~v~~~~vlh~~~d~~~~~~l~~~~~~L~pgG~l~i~e  295 (359)
T 1x19_A          257 ADAVLFCRILYSANEQLSTIMCKKAFDAMRSGGRLLILD  295 (359)
T ss_dssp             CSEEEEESCGGGSCHHHHHHHHHHHHTTCCTTCEEEEEE
T ss_pred             CCEEEEechhccCCHHHHHHHHHHHHHhcCCCCEEEEEe
Confidence            6999876544 4565668899999999999999997765

>3dtn_A Putative methyltransferase MM_2633; structural genomics, unknown function, PSI-2, protein structure initiative; 2.09A {Methanosarcina mazei}

Probab=99.55  E-value=1.8e-14  Score=125.64  Aligned_cols=106  Identities=17%  Similarity=0.321  Sum_probs=87.1

Q ss_pred             CCCCCEEEEeccCCChhhHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEccccchhhcCCCcceee
Q 042119          128 VVQPKKVAFVGSGPMPLTSIIMAKHHLTSTHFDNFDIDEAANDVARSIVASDAEFEGRMKFLTRDIMEVKEQLGEYDCIF  207 (286)
Q Consensus       128 ~~~~~~VL~IG~G~lp~tai~lA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~g~l~~~i~f~~~D~~~~~~~l~~fD~V~  207 (286)
                      ..++.+|||||||+ |..+..+++ ..++.+|+|+|+|+++++.|++.+...+    +++++++|+.+.+.+ +.||+|+
T Consensus        42 ~~~~~~vLDiG~G~-G~~~~~l~~-~~~~~~v~~vD~s~~~~~~a~~~~~~~~----~~~~~~~d~~~~~~~-~~fD~v~  114 (234)
T 3dtn_A           42 DTENPDILDLGAGT-GLLSAFLME-KYPEATFTLVDMSEKMLEIAKNRFRGNL----KVKYIEADYSKYDFE-EKYDMVV  114 (234)
T ss_dssp             SCSSCEEEEETCTT-SHHHHHHHH-HCTTCEEEEEESCHHHHHHHHHHTCSCT----TEEEEESCTTTCCCC-SCEEEEE
T ss_pred             CCCCCeEEEecCCC-CHHHHHHHH-hCCCCeEEEEECCHHHHHHHHHhhccCC----CEEEEeCchhccCCC-CCceEEE
Confidence            36779999999997 555666776 3679999999999999999999865433    799999999887766 7899999


Q ss_pred             hhhhc-cCChhHHHHHHHHHHhhccCCcEEEEee
Q 042119          208 LAALV-GMSKEEKLTILGHIRKYMKDGGILLVRS  240 (286)
Q Consensus       208 ~aalv-g~~~~~k~~vl~~l~~~l~pgg~lv~r~  240 (286)
                      ....+ ..+.+.+.++++++.+.|+|||.+++.+
T Consensus       115 ~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~  148 (234)
T 3dtn_A          115 SALSIHHLEDEDKKELYKRSYSILKESGIFINAD  148 (234)
T ss_dssp             EESCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred             EeCccccCCHHHHHHHHHHHHHhcCCCcEEEEEE
Confidence            76544 4455566689999999999999999865

>2avd_A Catechol-O-methyltransferase; structural genomics, structural genomics consortium, SGC; HET: SAM; 1.70A {Homo sapiens} SCOP: c.66.1.1

Probab=99.55  E-value=1.9e-14  Score=125.20  Aligned_cols=106  Identities=19%  Similarity=0.290  Sum_probs=90.2

Q ss_pred             CCCCEEEEeccCCChhhHHHHHhhcCC-CcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEccccchhhcC------C
Q 042119          129 VQPKKVAFVGSGPMPLTSIIMAKHHLT-STHFDNFDIDEAANDVARSIVASDAEFEGRMKFLTRDIMEVKEQL------G  201 (286)
Q Consensus       129 ~~~~~VL~IG~G~lp~tai~lA~~~~~-g~~V~~iDid~~ai~~Ar~~~~~~g~l~~~i~f~~~D~~~~~~~l------~  201 (286)
                      .++++||+|||| .|.+++.+|+. .+ +++|+++|+|+++++.|++.++..| +.++++|+++|+.+....+      +
T Consensus        68 ~~~~~vLdiG~G-~G~~~~~la~~-~~~~~~v~~vD~~~~~~~~a~~~~~~~g-~~~~i~~~~~d~~~~~~~~~~~~~~~  144 (229)
T 2avd_A           68 IQAKKALDLGTF-TGYSALALALA-LPADGRVVTCEVDAQPPELGRPLWRQAE-AEHKIDLRLKPALETLDELLAAGEAG  144 (229)
T ss_dssp             TTCCEEEEECCT-TSHHHHHHHTT-SCTTCEEEEEESCSHHHHHHHHHHHHTT-CTTTEEEEESCHHHHHHHHHHTTCTT
T ss_pred             cCCCEEEEEcCC-ccHHHHHHHHh-CCCCCEEEEEECCHHHHHHHHHHHHHCC-CCCeEEEEEcCHHHHHHHHHhcCCCC
Confidence            467899999999 58888999983 44 8999999999999999999999999 6789999999997654332      5


Q ss_pred             CcceeehhhhccCChhHHHHHHHHHHhhccCCcEEEEeec
Q 042119          202 EYDCIFLAALVGMSKEEKLTILGHIRKYMKDGGILLVRSA  241 (286)
Q Consensus       202 ~fD~V~~aalvg~~~~~k~~vl~~l~~~l~pgg~lv~r~~  241 (286)
                      .||+||++...    .....+++.+.+.|+|||++++.+.
T Consensus       145 ~~D~v~~d~~~----~~~~~~l~~~~~~L~pgG~lv~~~~  180 (229)
T 2avd_A          145 TFDVAVVDADK----ENCSAYYERCLQLLRPGGILAVLRV  180 (229)
T ss_dssp             CEEEEEECSCS----TTHHHHHHHHHHHEEEEEEEEEECC
T ss_pred             CccEEEECCCH----HHHHHHHHHHHHHcCCCeEEEEECC
Confidence            79999987543    5667899999999999999999763

>3vc1_A Geranyl diphosphate 2-C-methyltransferase; rossmann fold, methyltransferase fold, SAM-dependent methyltransferase; HET: SAH GST GOL; 1.82A {Streptomyces coelicolor} PDB: 3vc2_A* 4f84_A* 4f85_A 4f86_A*

Probab=99.54  E-value=3e-14  Score=130.50  Aligned_cols=107  Identities=7%  Similarity=0.136  Sum_probs=89.6

Q ss_pred             CCCCCEEEEeccCCChhhHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEccccchhhcCCCcceee
Q 042119          128 VVQPKKVAFVGSGPMPLTSIIMAKHHLTSTHFDNFDIDEAANDVARSIVASDAEFEGRMKFLTRDIMEVKEQLGEYDCIF  207 (286)
Q Consensus       128 ~~~~~~VL~IG~G~lp~tai~lA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~g~l~~~i~f~~~D~~~~~~~l~~fD~V~  207 (286)
                      ..++.+|||||||+ |..+..++++  .+++|+|+|+|+++++.|++.++..| +.++++|+++|+.+++...+.||+|+
T Consensus       115 ~~~~~~vLDiGcG~-G~~~~~la~~--~~~~v~gvD~s~~~~~~a~~~~~~~~-~~~~v~~~~~d~~~~~~~~~~fD~V~  190 (312)
T 3vc1_A          115 AGPDDTLVDAGCGR-GGSMVMAHRR--FGSRVEGVTLSAAQADFGNRRARELR-IDDHVRSRVCNMLDTPFDKGAVTASW  190 (312)
T ss_dssp             CCTTCEEEEESCTT-SHHHHHHHHH--HCCEEEEEESCHHHHHHHHHHHHHTT-CTTTEEEEECCTTSCCCCTTCEEEEE
T ss_pred             CCCCCEEEEecCCC-CHHHHHHHHH--cCCEEEEEeCCHHHHHHHHHHHHHcC-CCCceEEEECChhcCCCCCCCEeEEE
Confidence            57789999999997 5566777773  38999999999999999999999999 77899999999988765556899998


Q ss_pred             hhhhccCChhHHHHHHHHHHhhccCCcEEEEee
Q 042119          208 LAALVGMSKEEKLTILGHIRKYMKDGGILLVRS  240 (286)
Q Consensus       208 ~aalvg~~~~~k~~vl~~l~~~l~pgg~lv~r~  240 (286)
                      ....+..-  +..++++++.+.|||||++++.+
T Consensus       191 ~~~~l~~~--~~~~~l~~~~~~LkpgG~l~~~~  221 (312)
T 3vc1_A          191 NNESTMYV--DLHDLFSEHSRFLKVGGRYVTIT  221 (312)
T ss_dssp             EESCGGGS--CHHHHHHHHHHHEEEEEEEEEEE
T ss_pred             ECCchhhC--CHHHHHHHHHHHcCCCcEEEEEE
Confidence            65443221  37789999999999999999875

>1wzn_A SAM-dependent methyltransferase; structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: SAH; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.43

Probab=99.54  E-value=9.2e-14  Score=122.39  Aligned_cols=107  Identities=18%  Similarity=0.373  Sum_probs=87.2

Q ss_pred             hcCCCCCCEEEEeccCCChhhHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEccccchhhcCCCcc
Q 042119          125 ENGVVQPKKVAFVGSGPMPLTSIIMAKHHLTSTHFDNFDIDEAANDVARSIVASDAEFEGRMKFLTRDIMEVKEQLGEYD  204 (286)
Q Consensus       125 ~~~~~~~~~VL~IG~G~lp~tai~lA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~g~l~~~i~f~~~D~~~~~~~l~~fD  204 (286)
                      .....++.+|||||||+ |..++.+++   .|.+|+|+|+|+++++.|++.+...|   .+++|+++|+.+.+.+ +.||
T Consensus        36 ~~~~~~~~~vLDlGcG~-G~~~~~l~~---~~~~v~gvD~s~~~l~~a~~~~~~~~---~~v~~~~~d~~~~~~~-~~fD  107 (252)
T 1wzn_A           36 EDAKREVRRVLDLACGT-GIPTLELAE---RGYEVVGLDLHEEMLRVARRKAKERN---LKIEFLQGDVLEIAFK-NEFD  107 (252)
T ss_dssp             HTCSSCCCEEEEETCTT-CHHHHHHHH---TTCEEEEEESCHHHHHHHHHHHHHTT---CCCEEEESCGGGCCCC-SCEE
T ss_pred             HhcccCCCEEEEeCCCC-CHHHHHHHH---CCCeEEEEECCHHHHHHHHHHHHhcC---CceEEEECChhhcccC-CCcc
Confidence            33446778999999997 556677887   48899999999999999999998877   3799999999876543 5799


Q ss_pred             eeehh--hhccCChhHHHHHHHHHHhhccCCcEEEEe
Q 042119          205 CIFLA--ALVGMSKEEKLTILGHIRKYMKDGGILLVR  239 (286)
Q Consensus       205 ~V~~a--alvg~~~~~k~~vl~~l~~~l~pgg~lv~r  239 (286)
                      +|+..  .....+.++..++++++.+.|+|||.+++.
T Consensus       108 ~v~~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~li~~  144 (252)
T 1wzn_A          108 AVTMFFSTIMYFDEEDLRKLFSKVAEALKPGGVFITD  144 (252)
T ss_dssp             EEEECSSGGGGSCHHHHHHHHHHHHHHEEEEEEEEEE
T ss_pred             EEEEcCCchhcCCHHHHHHHHHHHHHHcCCCeEEEEe
Confidence            99853  233345567889999999999999999875

>3mb5_A SAM-dependent methyltransferase; RNA methyltransferase, M1A, TRMI, intermolecular contacts, R specificity, tetramer, disulfide bond; HET: SAM; 1.60A {Pyrococcus abyssi} PDB: 3lga_A* 3lhd_C*

Probab=99.53  E-value=2.4e-14  Score=126.77  Aligned_cols=149  Identities=17%  Similarity=0.271  Sum_probs=107.9

Q ss_pred             hcCCCCCCEEEEeccCCChhhHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEccccchhhcCCCcc
Q 042119          125 ENGVVQPKKVAFVGSGPMPLTSIIMAKHHLTSTHFDNFDIDEAANDVARSIVASDAEFEGRMKFLTRDIMEVKEQLGEYD  204 (286)
Q Consensus       125 ~~~~~~~~~VL~IG~G~lp~tai~lA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~g~l~~~i~f~~~D~~~~~~~l~~fD  204 (286)
                      ...+.++++|||+|||+ |..++.+++...++.+|+++|+|+++++.|++.++..| +.++++++++|+.+. .....||
T Consensus        88 ~~~~~~~~~vldiG~G~-G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~-~~~~v~~~~~d~~~~-~~~~~~D  164 (255)
T 3mb5_A           88 YAGISPGDFIVEAGVGS-GALTLFLANIVGPEGRVVSYEIREDFAKLAWENIKWAG-FDDRVTIKLKDIYEG-IEEENVD  164 (255)
T ss_dssp             HTTCCTTCEEEEECCTT-SHHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHHT-CTTTEEEECSCGGGC-CCCCSEE
T ss_pred             hhCCCCCCEEEEecCCc-hHHHHHHHHHhCCCeEEEEEecCHHHHHHHHHHHHHcC-CCCceEEEECchhhc-cCCCCcC
Confidence            34567899999999997 56667777743678999999999999999999999999 677899999999764 2334699


Q ss_pred             eeehhhhccCChhHHHHHHHHHHhhccCCcEEEEeecC---------cceeee--cccCCccc--ccCcEEE-EEecCcc
Q 042119          205 CIFLAALVGMSKEEKLTILGHIRKYMKDGGILLVRSAK---------GARAFL--YPVVVEHD--LLDFEVL-SAVHPND  270 (286)
Q Consensus       205 ~V~~aalvg~~~~~k~~vl~~l~~~l~pgg~lv~r~~~---------g~r~~l--yp~v~~~~--l~gf~~~-~~~~P~~  270 (286)
                      +|+.+.      ++...+++++.+.|+|||.+++-...         .++..-  |..++..+  .+.|++. ...||..
T Consensus       165 ~v~~~~------~~~~~~l~~~~~~L~~gG~l~~~~~~~~~~~~~~~~l~~~g~~f~~~~~~e~~~r~~~~~~~~~rp~~  238 (255)
T 3mb5_A          165 HVILDL------PQPERVVEHAAKALKPGGFFVAYTPCSNQVMRLHEKLREFKDYFMKPRTINVLVFDQEVKKECMRPRT  238 (255)
T ss_dssp             EEEECS------SCGGGGHHHHHHHEEEEEEEEEEESSHHHHHHHHHHHHHTGGGBSCCEEECCCCCCEEEETTEEEECS
T ss_pred             EEEECC------CCHHHHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHHcCCCccccEEEEEeeeeeEecCCccCCCc
Confidence            999742      34457999999999999999986521         111111  22222212  2567765 5567776


Q ss_pred             cce-ee--eEEEeec
Q 042119          271 DVI-NS--VVLVRNS  282 (286)
Q Consensus       271 ~vi-ns--vi~~r~~  282 (286)
                      ..+ ++  +++|||.
T Consensus       239 ~~~~htg~l~~ark~  253 (255)
T 3mb5_A          239 TALVHTGYITFARRI  253 (255)
T ss_dssp             CCCCCSCEEEEEEBC
T ss_pred             ccccccEEEEEEEEe
Confidence            533 44  7778873

>3lec_A NADB-rossmann superfamily protein; PSI, MCSG, structural genomics, midwest CENT structural genomics, protein structure initiative; 1.80A {Streptococcus agalactiae}

Probab=99.53  E-value=5.2e-14  Score=125.48  Aligned_cols=108  Identities=12%  Similarity=0.090  Sum_probs=90.8

Q ss_pred             CCCCCEEEEeccCCChhhHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEccccchhhcCCCcceee
Q 042119          128 VVQPKKVAFVGSGPMPLTSIIMAKHHLTSTHFDNFDIDEAANDVARSIVASDAEFEGRMKFLTRDIMEVKEQLGEYDCIF  207 (286)
Q Consensus       128 ~~~~~~VL~IG~G~lp~tai~lA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~g~l~~~i~f~~~D~~~~~~~l~~fD~V~  207 (286)
                      +.++.+|+|||||+ |+-++.+|+ ..+..+|+++|+|+.+++.|+++++..| +.++|++.++|+.+...+...||+|+
T Consensus        19 v~~g~~VlDIGtGs-G~l~i~la~-~~~~~~V~AvDi~~~al~~A~~N~~~~g-l~~~I~~~~gD~l~~~~~~~~~D~Iv   95 (230)
T 3lec_A           19 VPKGARLLDVGSDH-AYLPIFLLQ-MGYCDFAIAGEVVNGPYQSALKNVSEHG-LTSKIDVRLANGLSAFEEADNIDTIT   95 (230)
T ss_dssp             SCTTEEEEEETCST-THHHHHHHH-TTCEEEEEEEESSHHHHHHHHHHHHHTT-CTTTEEEEECSGGGGCCGGGCCCEEE
T ss_pred             CCCCCEEEEECCch-HHHHHHHHH-hCCCCEEEEEECCHHHHHHHHHHHHHcC-CCCcEEEEECchhhccccccccCEEE
Confidence            46789999999997 667788888 3567899999999999999999999999 78899999999987665433699998


Q ss_pred             hhhhccCChhHHHHHHHHHHhhccCCcEEEEeec
Q 042119          208 LAALVGMSKEEKLTILGHIRKYMKDGGILLVRSA  241 (286)
Q Consensus       208 ~aalvg~~~~~k~~vl~~l~~~l~pgg~lv~r~~  241 (286)
                      ++..   -.+--.++++...+.++++|.+++..-
T Consensus        96 iaGm---Gg~lI~~IL~~~~~~l~~~~~lIlqp~  126 (230)
T 3lec_A           96 ICGM---GGRLIADILNNDIDKLQHVKTLVLQPN  126 (230)
T ss_dssp             EEEE---CHHHHHHHHHHTGGGGTTCCEEEEEES
T ss_pred             EeCC---chHHHHHHHHHHHHHhCcCCEEEEECC
Confidence            7633   335567899999999999999999864

>2fk8_A Methoxy mycolic acid synthase 4; S-adenosylmethionine-dependent methyltransferase fold, trans; HET: SAM; 2.00A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 2fk7_A* 3ha3_A* 3ha5_A* 3ha7_A*

Probab=99.53  E-value=7.5e-14  Score=127.72  Aligned_cols=111  Identities=13%  Similarity=0.075  Sum_probs=91.8

Q ss_pred             HHhcCCCCCCEEEEeccCCChhhHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEccccchhhcCCC
Q 042119          123 LSENGVVQPKKVAFVGSGPMPLTSIIMAKHHLTSTHFDNFDIDEAANDVARSIVASDAEFEGRMKFLTRDIMEVKEQLGE  202 (286)
Q Consensus       123 l~~~~~~~~~~VL~IG~G~lp~tai~lA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~g~l~~~i~f~~~D~~~~~~~l~~  202 (286)
                      +......++.+|||||||+ |..+..+++.  .|++|+|+|+|+++++.|++.+...| +.++++|+++|+.+++   +.
T Consensus        83 ~~~~~~~~~~~vLDiGcG~-G~~~~~la~~--~~~~v~gvD~s~~~~~~a~~~~~~~~-~~~~v~~~~~d~~~~~---~~  155 (318)
T 2fk8_A           83 LDKLDLKPGMTLLDIGCGW-GTTMRRAVER--FDVNVIGLTLSKNQHARCEQVLASID-TNRSRQVLLQGWEDFA---EP  155 (318)
T ss_dssp             HTTSCCCTTCEEEEESCTT-SHHHHHHHHH--HCCEEEEEESCHHHHHHHHHHHHTSC-CSSCEEEEESCGGGCC---CC
T ss_pred             HHhcCCCCcCEEEEEcccc-hHHHHHHHHH--CCCEEEEEECCHHHHHHHHHHHHhcC-CCCceEEEECChHHCC---CC
Confidence            3344567889999999997 5666778873  28899999999999999999999999 6788999999997754   68


Q ss_pred             cceeehhhhc-cCChhHHHHHHHHHHhhccCCcEEEEee
Q 042119          203 YDCIFLAALV-GMSKEEKLTILGHIRKYMKDGGILLVRS  240 (286)
Q Consensus       203 fD~V~~aalv-g~~~~~k~~vl~~l~~~l~pgg~lv~r~  240 (286)
                      ||+|+....+ .++.++..++++++.+.|+|||.+++..
T Consensus       156 fD~v~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~  194 (318)
T 2fk8_A          156 VDRIVSIEAFEHFGHENYDDFFKRCFNIMPADGRMTVQS  194 (318)
T ss_dssp             CSEEEEESCGGGTCGGGHHHHHHHHHHHSCTTCEEEEEE
T ss_pred             cCEEEEeChHHhcCHHHHHHHHHHHHHhcCCCcEEEEEE
Confidence            9999865433 3344678899999999999999999876

>2gpy_A O-methyltransferase; structural genomics, PSI, protein structure initiative, NEW research center for structural genomics, nysgxrc; HET: MSE; 1.90A {Bacillus halodurans}

Probab=99.53  E-value=2.9e-14  Score=124.88  Aligned_cols=105  Identities=20%  Similarity=0.353  Sum_probs=89.5

Q ss_pred             CCCCEEEEeccCCChhhHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEccccchhhc---CCCcce
Q 042119          129 VQPKKVAFVGSGPMPLTSIIMAKHHLTSTHFDNFDIDEAANDVARSIVASDAEFEGRMKFLTRDIMEVKEQ---LGEYDC  205 (286)
Q Consensus       129 ~~~~~VL~IG~G~lp~tai~lA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~g~l~~~i~f~~~D~~~~~~~---l~~fD~  205 (286)
                      .++.+||+||||+ |..++.+|+ ..++.+|+++|+|+++++.|++.++..| +.++++++++|+.+....   .+.||+
T Consensus        53 ~~~~~vLdiG~G~-G~~~~~la~-~~~~~~v~~vD~~~~~~~~a~~~~~~~~-~~~~v~~~~~d~~~~~~~~~~~~~fD~  129 (233)
T 2gpy_A           53 AAPARILEIGTAI-GYSAIRMAQ-ALPEATIVSIERDERRYEEAHKHVKALG-LESRIELLFGDALQLGEKLELYPLFDV  129 (233)
T ss_dssp             HCCSEEEEECCTT-SHHHHHHHH-HCTTCEEEEECCCHHHHHHHHHHHHHTT-CTTTEEEECSCGGGSHHHHTTSCCEEE
T ss_pred             cCCCEEEEecCCC-cHHHHHHHH-HCCCCEEEEEECCHHHHHHHHHHHHHcC-CCCcEEEEECCHHHHHHhcccCCCccE
Confidence            4678999999995 777788888 4678999999999999999999999999 677899999999875332   257999


Q ss_pred             eehhhhccCChhHHHHHHHHHHhhccCCcEEEEee
Q 042119          206 IFLAALVGMSKEEKLTILGHIRKYMKDGGILLVRS  240 (286)
Q Consensus       206 V~~aalvg~~~~~k~~vl~~l~~~l~pgg~lv~r~  240 (286)
                      ||++...    +...++++.+.+.|+|||++++.+
T Consensus       130 I~~~~~~----~~~~~~l~~~~~~L~pgG~lv~~~  160 (233)
T 2gpy_A          130 LFIDAAK----GQYRRFFDMYSPMVRPGGLILSDN  160 (233)
T ss_dssp             EEEEGGG----SCHHHHHHHHGGGEEEEEEEEEET
T ss_pred             EEECCCH----HHHHHHHHHHHHHcCCCeEEEEEc
Confidence            9987654    466789999999999999999975

>3e8s_A Putative SAM dependent methyltransferase; NP_744700.1, structural genomics, joint center for structural genom JCSG; HET: SAH; 2.10A {Pseudomonas putida KT2440}

Probab=99.53  E-value=3.6e-14  Score=121.93  Aligned_cols=99  Identities=21%  Similarity=0.303  Sum_probs=80.3

Q ss_pred             CCCCEEEEeccCCChhhHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEccccch---hhcCC-Ccc
Q 042119          129 VQPKKVAFVGSGPMPLTSIIMAKHHLTSTHFDNFDIDEAANDVARSIVASDAEFEGRMKFLTRDIMEV---KEQLG-EYD  204 (286)
Q Consensus       129 ~~~~~VL~IG~G~lp~tai~lA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~g~l~~~i~f~~~D~~~~---~~~l~-~fD  204 (286)
                      .++.+|||||||+ |..+..+++   .|++|+|+|+|+.+++.|++.    +    ++++.++|+.++   +...+ .||
T Consensus        51 ~~~~~vLdiG~G~-G~~~~~l~~---~~~~v~~vD~s~~~~~~a~~~----~----~~~~~~~~~~~~~~~~~~~~~~fD  118 (227)
T 3e8s_A           51 RQPERVLDLGCGE-GWLLRALAD---RGIEAVGVDGDRTLVDAARAA----G----AGEVHLASYAQLAEAKVPVGKDYD  118 (227)
T ss_dssp             TCCSEEEEETCTT-CHHHHHHHT---TTCEEEEEESCHHHHHHHHHT----C----SSCEEECCHHHHHTTCSCCCCCEE
T ss_pred             CCCCEEEEeCCCC-CHHHHHHHH---CCCEEEEEcCCHHHHHHHHHh----c----ccccchhhHHhhcccccccCCCcc
Confidence            5679999999996 666788887   488999999999999999987    3    467899998876   33334 499


Q ss_pred             eeehhhhccCChhHHHHHHHHHHhhccCCcEEEEeec
Q 042119          205 CIFLAALVGMSKEEKLTILGHIRKYMKDGGILLVRSA  241 (286)
Q Consensus       205 ~V~~aalvg~~~~~k~~vl~~l~~~l~pgg~lv~r~~  241 (286)
                      +|+....+.  .++...+++++.+.|+|||.+++...
T Consensus       119 ~v~~~~~l~--~~~~~~~l~~~~~~L~pgG~l~~~~~  153 (227)
T 3e8s_A          119 LICANFALL--HQDIIELLSAMRTLLVPGGALVIQTL  153 (227)
T ss_dssp             EEEEESCCC--SSCCHHHHHHHHHTEEEEEEEEEEEC
T ss_pred             EEEECchhh--hhhHHHHHHHHHHHhCCCeEEEEEec
Confidence            998765443  35667899999999999999999763

>4htf_A S-adenosylmethionine-dependent methyltransferase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: MSE SAM; 1.60A {Escherichia coli}

Probab=99.53  E-value=6.2e-14  Score=126.22  Aligned_cols=107  Identities=20%  Similarity=0.243  Sum_probs=88.8

Q ss_pred             CCCCCEEEEeccCCChhhHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEccccchh-hcCCCccee
Q 042119          128 VVQPKKVAFVGSGPMPLTSIIMAKHHLTSTHFDNFDIDEAANDVARSIVASDAEFEGRMKFLTRDIMEVK-EQLGEYDCI  206 (286)
Q Consensus       128 ~~~~~~VL~IG~G~lp~tai~lA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~g~l~~~i~f~~~D~~~~~-~~l~~fD~V  206 (286)
                      ..++.+|||||||+ |..+..+++   .|.+|+|+|+|+++++.|++.+...| +..+++|+++|+.+++ ...+.||+|
T Consensus        66 ~~~~~~vLDiGcG~-G~~~~~l~~---~~~~v~gvD~s~~~~~~a~~~~~~~~-~~~~v~~~~~d~~~~~~~~~~~fD~v  140 (285)
T 4htf_A           66 GPQKLRVLDAGGGE-GQTAIKMAE---RGHQVILCDLSAQMIDRAKQAAEAKG-VSDNMQFIHCAAQDVASHLETPVDLI  140 (285)
T ss_dssp             CSSCCEEEEETCTT-CHHHHHHHH---TTCEEEEEESCHHHHHHHHHHHHC-C-CGGGEEEEESCGGGTGGGCSSCEEEE
T ss_pred             CCCCCEEEEeCCcc-hHHHHHHHH---CCCEEEEEECCHHHHHHHHHHHHhcC-CCcceEEEEcCHHHhhhhcCCCceEE
Confidence            34578999999996 677788888   48999999999999999999999988 6789999999998877 344679999


Q ss_pred             ehhhhccCChhHHHHHHHHHHhhccCCcEEEEee
Q 042119          207 FLAALVGMSKEEKLTILGHIRKYMKDGGILLVRS  240 (286)
Q Consensus       207 ~~aalvg~~~~~k~~vl~~l~~~l~pgg~lv~r~  240 (286)
                      +....+.+ .++..++++++.+.|||||.+++..
T Consensus       141 ~~~~~l~~-~~~~~~~l~~~~~~LkpgG~l~~~~  173 (285)
T 4htf_A          141 LFHAVLEW-VADPRSVLQTLWSVLRPGGVLSLMF  173 (285)
T ss_dssp             EEESCGGG-CSCHHHHHHHHHHTEEEEEEEEEEE
T ss_pred             EECchhhc-ccCHHHHHHHHHHHcCCCeEEEEEE
Confidence            97654422 2456789999999999999999865

>3mgg_A Methyltransferase; NYSGXRC, PSI-II, protein structure initiative, structural genomics, NEW YORK SGX research center for structural genomics; 1.86A {Methanosarcina mazei}

Probab=99.53  E-value=7.7e-14  Score=124.69  Aligned_cols=109  Identities=22%  Similarity=0.315  Sum_probs=90.6

Q ss_pred             CCCCCEEEEeccCCChhhHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEccccchhhcCCCcceee
Q 042119          128 VVQPKKVAFVGSGPMPLTSIIMAKHHLTSTHFDNFDIDEAANDVARSIVASDAEFEGRMKFLTRDIMEVKEQLGEYDCIF  207 (286)
Q Consensus       128 ~~~~~~VL~IG~G~lp~tai~lA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~g~l~~~i~f~~~D~~~~~~~l~~fD~V~  207 (286)
                      ..++.+|||||||+ |..+..+++ ..++.+|+++|+|+.+++.|++.+...|.  .+++|+++|+.+++.+.+.||+|+
T Consensus        35 ~~~~~~vLDiG~G~-G~~~~~l~~-~~~~~~v~~vD~s~~~~~~a~~~~~~~~~--~~~~~~~~d~~~~~~~~~~fD~v~  110 (276)
T 3mgg_A           35 YPPGAKVLEAGCGI-GAQTVILAK-NNPDAEITSIDISPESLEKARENTEKNGI--KNVKFLQANIFSLPFEDSSFDHIF  110 (276)
T ss_dssp             CCTTCEEEETTCTT-SHHHHHHHH-HCTTSEEEEEESCHHHHHHHHHHHHHTTC--CSEEEEECCGGGCCSCTTCEEEEE
T ss_pred             CCCCCeEEEecCCC-CHHHHHHHH-hCCCCEEEEEECCHHHHHHHHHHHHHcCC--CCcEEEEcccccCCCCCCCeeEEE
Confidence            47889999999997 556677777 37799999999999999999999999883  579999999988776667899999


Q ss_pred             hhhhccCChhHHHHHHHHHHhhccCCcEEEEeec
Q 042119          208 LAALVGMSKEEKLTILGHIRKYMKDGGILLVRSA  241 (286)
Q Consensus       208 ~aalvg~~~~~k~~vl~~l~~~l~pgg~lv~r~~  241 (286)
                      ....... ..+...+++++.+.|+|||.+++...
T Consensus       111 ~~~~l~~-~~~~~~~l~~~~~~L~pgG~l~~~~~  143 (276)
T 3mgg_A          111 VCFVLEH-LQSPEEALKSLKKVLKPGGTITVIEG  143 (276)
T ss_dssp             EESCGGG-CSCHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred             Eechhhh-cCCHHHHHHHHHHHcCCCcEEEEEEc
Confidence            7654322 24556899999999999999999763

>2a14_A Indolethylamine N-methyltransferase; SGC,INMT, structural genomics, structural genomics consortium; HET: SAH; 1.70A {Homo sapiens} SCOP: c.66.1.15

Probab=99.52  E-value=7.2e-14  Score=125.26  Aligned_cols=110  Identities=19%  Similarity=0.261  Sum_probs=80.5

Q ss_pred             CCCCCCEEEEeccCCChhhHHHHHhhcCCCc-EEEEEeCChHHHHHHHHHHHhcCC-C----------------------
Q 042119          127 GVVQPKKVAFVGSGPMPLTSIIMAKHHLTST-HFDNFDIDEAANDVARSIVASDAE-F----------------------  182 (286)
Q Consensus       127 ~~~~~~~VL~IG~G~lp~tai~lA~~~~~g~-~V~~iDid~~ai~~Ar~~~~~~g~-l----------------------  182 (286)
                      +..++.+|||||||+ |..++.+++   .|+ +|+|+|+|+.|++.|++.++..+. +                      
T Consensus        52 ~~~~g~~vLDiGCG~-G~~~~~~~~---~~~~~v~g~D~s~~~l~~a~~~~~~~~~~~d~s~~~~~~~~~~~~~~~~~~~  127 (263)
T 2a14_A           52 GGLQGDTLIDIGSGP-TIYQVLAAC---DSFQDITLSDFTDRNREELEKWLKKEPGAYDWTPAVKFACELEGNSGRWEEK  127 (263)
T ss_dssp             TSCCEEEEEESSCTT-CCGGGTTGG---GTEEEEEEEESCHHHHHHHHHHHHTCTTCCCCHHHHHHHHHHTTCGGGHHHH
T ss_pred             CCCCCceEEEeCCCc-cHHHHHHHH---hhhcceeeccccHHHHHHHHHHHhcCCCcccchHHHHHHHhcCCCCcchhhH
Confidence            557789999999998 444455555   555 699999999999999998765320 0                      


Q ss_pred             ----CCCeE-EEEccccch-hh---cCCCcceeehhhhc---cCChhHHHHHHHHHHhhccCCcEEEEee
Q 042119          183 ----EGRMK-FLTRDIMEV-KE---QLGEYDCIFLAALV---GMSKEEKLTILGHIRKYMKDGGILLVRS  240 (286)
Q Consensus       183 ----~~~i~-f~~~D~~~~-~~---~l~~fD~V~~aalv---g~~~~~k~~vl~~l~~~l~pgg~lv~r~  240 (286)
                          ..+++ ++++|+.+. +.   ..+.||+|+.....   ..+.++..+++.++++.|||||.+++..
T Consensus       128 ~~~~~~~i~~~~~~D~~~~~~~~~~~~~~fD~V~~~~~l~~i~~~~~~~~~~l~~i~r~LKPGG~li~~~  197 (263)
T 2a14_A          128 EEKLRAAVKRVLKCDVHLGNPLAPAVLPLADCVLTLLAMECACCSLDAYRAALCNLASLLKPGGHLVTTV  197 (263)
T ss_dssp             HHHHHHHEEEEEECCTTSSSTTTTCCCCCEEEEEEESCHHHHCSSHHHHHHHHHHHHTTEEEEEEEEEEE
T ss_pred             HHHHHhhhheEEeccccCCCCCCccccCCCCEeeehHHHHHhcCCHHHHHHHHHHHHHHcCCCcEEEEEE
Confidence                01244 899999773 21   23579999864322   2234677889999999999999999986

>3dp7_A SAM-dependent methyltransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research; 2.33A {Bacteroides vulgatus}

Probab=99.52  E-value=7.4e-14  Score=131.14  Aligned_cols=107  Identities=12%  Similarity=0.193  Sum_probs=90.2

Q ss_pred             CCCCEEEEeccCCChhhHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEccccchh--hcCCCccee
Q 042119          129 VQPKKVAFVGSGPMPLTSIIMAKHHLTSTHFDNFDIDEAANDVARSIVASDAEFEGRMKFLTRDIMEVK--EQLGEYDCI  206 (286)
Q Consensus       129 ~~~~~VL~IG~G~lp~tai~lA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~g~l~~~i~f~~~D~~~~~--~~l~~fD~V  206 (286)
                      ..+.+|||||||+ |..++.+++ .+|+.+++++|+ |++++.|++.+...| +.++++|+.+|..+..  .+ ++||+|
T Consensus       178 ~~~~~vlDvG~G~-G~~~~~l~~-~~p~~~~~~~D~-~~~~~~a~~~~~~~~-~~~~v~~~~~d~~~~~~~~p-~~~D~v  252 (363)
T 3dp7_A          178 HHPKRLLDIGGNT-GKWATQCVQ-YNKEVEVTIVDL-PQQLEMMRKQTAGLS-GSERIHGHGANLLDRDVPFP-TGFDAV  252 (363)
T ss_dssp             GCCSEEEEESCTT-CHHHHHHHH-HSTTCEEEEEEC-HHHHHHHHHHHTTCT-TGGGEEEEECCCCSSSCCCC-CCCSEE
T ss_pred             cCCCEEEEeCCCc-CHHHHHHHH-hCCCCEEEEEeC-HHHHHHHHHHHHhcC-cccceEEEEccccccCCCCC-CCcCEE
Confidence            5678999999996 666777877 489999999999 999999999999888 6789999999997631  22 589999


Q ss_pred             ehhhhc-cCChhHHHHHHHHHHhhccCCcEEEEee
Q 042119          207 FLAALV-GMSKEEKLTILGHIRKYMKDGGILLVRS  240 (286)
Q Consensus       207 ~~aalv-g~~~~~k~~vl~~l~~~l~pgg~lv~r~  240 (286)
                      ++...+ .++.++..++++++++.|+|||.|++.+
T Consensus       253 ~~~~vlh~~~~~~~~~~l~~~~~~L~pgG~l~i~e  287 (363)
T 3dp7_A          253 WMSQFLDCFSEEEVISILTRVAQSIGKDSKVYIME  287 (363)
T ss_dssp             EEESCSTTSCHHHHHHHHHHHHHHCCTTCEEEEEE
T ss_pred             EEechhhhCCHHHHHHHHHHHHHhcCCCcEEEEEe
Confidence            976544 4566777899999999999999998865

>3kr9_A SAM-dependent methyltransferase; class I rossmann-like methyltransferase fold; 2.00A {Streptococcus pneumoniae} PDB: 3ku1_A*

Probab=99.52  E-value=1.2e-13  Score=122.77  Aligned_cols=109  Identities=15%  Similarity=0.077  Sum_probs=88.9

Q ss_pred             CCCCCEEEEeccCCChhhHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEccccchhhcCCCcceee
Q 042119          128 VVQPKKVAFVGSGPMPLTSIIMAKHHLTSTHFDNFDIDEAANDVARSIVASDAEFEGRMKFLTRDIMEVKEQLGEYDCIF  207 (286)
Q Consensus       128 ~~~~~~VL~IG~G~lp~tai~lA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~g~l~~~i~f~~~D~~~~~~~l~~fD~V~  207 (286)
                      +.++.+|+|||||+ |.-++.+|+ ..+..+|+++|+|+.+++.|+++++..| +.++|++..+|+.+...+-..||+|+
T Consensus        13 v~~g~~VlDIGtGs-G~l~i~la~-~~~~~~V~avDi~~~al~~A~~N~~~~g-l~~~i~~~~~d~l~~l~~~~~~D~Iv   89 (225)
T 3kr9_A           13 VSQGAILLDVGSDH-AYLPIELVE-RGQIKSAIAGEVVEGPYQSAVKNVEAHG-LKEKIQVRLANGLAAFEETDQVSVIT   89 (225)
T ss_dssp             SCTTEEEEEETCST-THHHHHHHH-TTSEEEEEEEESSHHHHHHHHHHHHHTT-CTTTEEEEECSGGGGCCGGGCCCEEE
T ss_pred             CCCCCEEEEeCCCc-HHHHHHHHH-hCCCCEEEEEECCHHHHHHHHHHHHHcC-CCceEEEEECchhhhcccCcCCCEEE
Confidence            46778999999997 666788888 4677899999999999999999999999 78899999999965332212699998


Q ss_pred             hhhhccCChhHHHHHHHHHHhhccCCcEEEEeecC
Q 042119          208 LAALVGMSKEEKLTILGHIRKYMKDGGILLVRSAK  242 (286)
Q Consensus       208 ~aalvg~~~~~k~~vl~~l~~~l~pgg~lv~r~~~  242 (286)
                      ++.   |..+--.++++...++|+|+|.+++....
T Consensus        90 iaG---~Gg~~i~~Il~~~~~~L~~~~~lVlq~~~  121 (225)
T 3kr9_A           90 IAG---MGGRLIARILEEGLGKLANVERLILQPNN  121 (225)
T ss_dssp             EEE---ECHHHHHHHHHHTGGGCTTCCEEEEEESS
T ss_pred             EcC---CChHHHHHHHHHHHHHhCCCCEEEEECCC
Confidence            763   32344568999999999999999997643

>3h2b_A SAM-dependent methyltransferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAH; 2.00A {Corynebacterium glutamicum atcc 13032}

Probab=99.51  E-value=1.4e-13  Score=117.43  Aligned_cols=99  Identities=18%  Similarity=0.189  Sum_probs=83.4

Q ss_pred             CCEEEEeccCCChhhHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEccccchhhcCCCcceeehhh
Q 042119          131 PKKVAFVGSGPMPLTSIIMAKHHLTSTHFDNFDIDEAANDVARSIVASDAEFEGRMKFLTRDIMEVKEQLGEYDCIFLAA  210 (286)
Q Consensus       131 ~~~VL~IG~G~lp~tai~lA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~g~l~~~i~f~~~D~~~~~~~l~~fD~V~~aa  210 (286)
                      +.+|||||||+ |..+..+++   .|.+|+|+|+|+++++.|++.    .   .+++|+++|+.+++...+.||+|+...
T Consensus        42 ~~~vLDiGcG~-G~~~~~l~~---~~~~v~gvD~s~~~~~~a~~~----~---~~~~~~~~d~~~~~~~~~~fD~v~~~~  110 (203)
T 3h2b_A           42 DGVILDVGSGT-GRWTGHLAS---LGHQIEGLEPATRLVELARQT----H---PSVTFHHGTITDLSDSPKRWAGLLAWY  110 (203)
T ss_dssp             CSCEEEETCTT-CHHHHHHHH---TTCCEEEECCCHHHHHHHHHH----C---TTSEEECCCGGGGGGSCCCEEEEEEES
T ss_pred             CCeEEEecCCC-CHHHHHHHh---cCCeEEEEeCCHHHHHHHHHh----C---CCCeEEeCcccccccCCCCeEEEEehh
Confidence            78999999997 566677887   478999999999999999986    2   479999999998776667899999755


Q ss_pred             hc-cCChhHHHHHHHHHHhhccCCcEEEEee
Q 042119          211 LV-GMSKEEKLTILGHIRKYMKDGGILLVRS  240 (286)
Q Consensus       211 lv-g~~~~~k~~vl~~l~~~l~pgg~lv~r~  240 (286)
                      .+ .++.++...+++++.+.|+|||.+++..
T Consensus       111 ~l~~~~~~~~~~~l~~~~~~L~pgG~l~i~~  141 (203)
T 3h2b_A          111 SLIHMGPGELPDALVALRMAVEDGGGLLMSF  141 (203)
T ss_dssp             SSTTCCTTTHHHHHHHHHHTEEEEEEEEEEE
T ss_pred             hHhcCCHHHHHHHHHHHHHHcCCCcEEEEEE
Confidence            43 4444678899999999999999999976

>2kw5_A SLR1183 protein; structural genomics, northeast structural genomics consortium (NESG), PSI-2, protein structure initiative, unknown function; NMR {Synechocystis} PDB: 3mer_A

Probab=99.51  E-value=1.7e-13  Score=116.69  Aligned_cols=103  Identities=10%  Similarity=0.216  Sum_probs=87.1

Q ss_pred             CCCCEEEEeccCCChhhHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEccccchhhcCCCcceeeh
Q 042119          129 VQPKKVAFVGSGPMPLTSIIMAKHHLTSTHFDNFDIDEAANDVARSIVASDAEFEGRMKFLTRDIMEVKEQLGEYDCIFL  208 (286)
Q Consensus       129 ~~~~~VL~IG~G~lp~tai~lA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~g~l~~~i~f~~~D~~~~~~~l~~fD~V~~  208 (286)
                      .++ +||+||||+ |..+..+++   .|.+|+++|+|+++++.|++.+...| .  +++|+++|+.+.+...+.||+|+.
T Consensus        29 ~~~-~vLdiGcG~-G~~~~~l~~---~~~~v~~vD~s~~~~~~a~~~~~~~~-~--~~~~~~~d~~~~~~~~~~fD~v~~  100 (202)
T 2kw5_A           29 PQG-KILCLAEGE-GRNACFLAS---LGYEVTAVDQSSVGLAKAKQLAQEKG-V--KITTVQSNLADFDIVADAWEGIVS  100 (202)
T ss_dssp             CSS-EEEECCCSC-THHHHHHHT---TTCEEEEECSSHHHHHHHHHHHHHHT-C--CEEEECCBTTTBSCCTTTCSEEEE
T ss_pred             CCC-CEEEECCCC-CHhHHHHHh---CCCeEEEEECCHHHHHHHHHHHHhcC-C--ceEEEEcChhhcCCCcCCccEEEE
Confidence            345 999999997 666788887   47899999999999999999998888 3  799999999877654467999986


Q ss_pred             hhhccCChhHHHHHHHHHHhhccCCcEEEEee
Q 042119          209 AALVGMSKEEKLTILGHIRKYMKDGGILLVRS  240 (286)
Q Consensus       209 aalvg~~~~~k~~vl~~l~~~l~pgg~lv~r~  240 (286)
                      . +..++.++..++++++.+.|+|||.+++..
T Consensus       101 ~-~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~  131 (202)
T 2kw5_A          101 I-FCHLPSSLRQQLYPKVYQGLKPGGVFILEG  131 (202)
T ss_dssp             E-CCCCCHHHHHHHHHHHHTTCCSSEEEEEEE
T ss_pred             E-hhcCCHHHHHHHHHHHHHhcCCCcEEEEEE
Confidence            3 444566788899999999999999999986

>3ofk_A Nodulation protein S; NODS, N-methyltransferase, SAH, SAM, NOD factor, fixation, symbiosis, alpha/beta structure; HET: SAH; 1.85A {Bradyrhizobium SP} PDB: 3ofj_A*

Probab=99.51  E-value=7.9e-14  Score=120.04  Aligned_cols=105  Identities=15%  Similarity=0.155  Sum_probs=84.6

Q ss_pred             CCCCCCEEEEeccCCChhhHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEccccchhhcCCCccee
Q 042119          127 GVVQPKKVAFVGSGPMPLTSIIMAKHHLTSTHFDNFDIDEAANDVARSIVASDAEFEGRMKFLTRDIMEVKEQLGEYDCI  206 (286)
Q Consensus       127 ~~~~~~~VL~IG~G~lp~tai~lA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~g~l~~~i~f~~~D~~~~~~~l~~fD~V  206 (286)
                      ...++.+|||||||+ |..+..+++   .+.+|+|+|+|+++++.|++.+...    .+++|+++|+.+.+ ..+.||+|
T Consensus        48 ~~~~~~~vLDiGcG~-G~~~~~l~~---~~~~v~~vD~s~~~~~~a~~~~~~~----~~~~~~~~d~~~~~-~~~~fD~v  118 (216)
T 3ofk_A           48 SSGAVSNGLEIGCAA-GAFTEKLAP---HCKRLTVIDVMPRAIGRACQRTKRW----SHISWAATDILQFS-TAELFDLI  118 (216)
T ss_dssp             TTSSEEEEEEECCTT-SHHHHHHGG---GEEEEEEEESCHHHHHHHHHHTTTC----SSEEEEECCTTTCC-CSCCEEEE
T ss_pred             ccCCCCcEEEEcCCC-CHHHHHHHH---cCCEEEEEECCHHHHHHHHHhcccC----CCeEEEEcchhhCC-CCCCccEE
Confidence            346778999999997 566677777   4689999999999999999986653    37999999998876 34689999


Q ss_pred             ehhhhc-cCC-hhHHHHHHHHHHhhccCCcEEEEee
Q 042119          207 FLAALV-GMS-KEEKLTILGHIRKYMKDGGILLVRS  240 (286)
Q Consensus       207 ~~aalv-g~~-~~~k~~vl~~l~~~l~pgg~lv~r~  240 (286)
                      +....+ .++ .+...++++++.+.|+|||.+++.+
T Consensus       119 ~~~~~l~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~  154 (216)
T 3ofk_A          119 VVAEVLYYLEDMTQMRTAIDNMVKMLAPGGHLVFGS  154 (216)
T ss_dssp             EEESCGGGSSSHHHHHHHHHHHHHTEEEEEEEEEEE
T ss_pred             EEccHHHhCCCHHHHHHHHHHHHHHcCCCCEEEEEe
Confidence            976443 332 3455689999999999999999965

>1zx0_A Guanidinoacetate N-methyltransferase; structural genomics, structural genomics consortium; HET: SAH; 1.86A {Homo sapiens} PDB: 3orh_A* 1xcj_A* 1xcl_A* 1p1c_A* 1p1b_A* 1khh_A*

Probab=99.51  E-value=4.1e-14  Score=124.34  Aligned_cols=107  Identities=15%  Similarity=0.130  Sum_probs=84.9

Q ss_pred             CCCCCEEEEeccCCChhhHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEccccch--hhcCCCcce
Q 042119          128 VVQPKKVAFVGSGPMPLTSIIMAKHHLTSTHFDNFDIDEAANDVARSIVASDAEFEGRMKFLTRDIMEV--KEQLGEYDC  205 (286)
Q Consensus       128 ~~~~~~VL~IG~G~lp~tai~lA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~g~l~~~i~f~~~D~~~~--~~~l~~fD~  205 (286)
                      +.++.+|||||||+ |..+..+++  ....+|+++|+|+++++.|++..+..|   .+++|+++|+.++  +...+.||+
T Consensus        58 ~~~~~~vLDiGcGt-G~~~~~l~~--~~~~~v~gvD~s~~~l~~a~~~~~~~~---~~v~~~~~d~~~~~~~~~~~~fD~  131 (236)
T 1zx0_A           58 SSKGGRVLEVGFGM-AIAASKVQE--APIDEHWIIECNDGVFQRLRDWAPRQT---HKVIPLKGLWEDVAPTLPDGHFDG  131 (236)
T ss_dssp             TTTCEEEEEECCTT-SHHHHHHHT--SCEEEEEEEECCHHHHHHHHHHGGGCS---SEEEEEESCHHHHGGGSCTTCEEE
T ss_pred             CCCCCeEEEEeccC-CHHHHHHHh--cCCCeEEEEcCCHHHHHHHHHHHHhcC---CCeEEEecCHHHhhcccCCCceEE
Confidence            46788999999996 566677776  344599999999999999999887766   5799999999887  444467999


Q ss_pred             eehhhh---c-cCChhHHHHHHHHHHhhccCCcEEEEee
Q 042119          206 IFLAAL---V-GMSKEEKLTILGHIRKYMKDGGILLVRS  240 (286)
Q Consensus       206 V~~aal---v-g~~~~~k~~vl~~l~~~l~pgg~lv~r~  240 (286)
                      |+.+..   . ....+.+..++++++++|||||++++-+
T Consensus       132 V~~d~~~~~~~~~~~~~~~~~l~~~~r~LkpgG~l~~~~  170 (236)
T 1zx0_A          132 ILYDTYPLSEETWHTHQFNFIKNHAFRLLKPGGVLTYCN  170 (236)
T ss_dssp             EEECCCCCBGGGTTTHHHHHHHHTHHHHEEEEEEEEECC
T ss_pred             EEECCcccchhhhhhhhHHHHHHHHHHhcCCCeEEEEEe
Confidence            986111   1 2234566788999999999999999865

>3hnr_A Probable methyltransferase BT9727_4108; structural genomics, PSI-2, protein structure initiative; 2.80A {Bacillus thuringiensis serovarkonkukian}

Probab=99.51  E-value=6.9e-14  Score=120.55  Aligned_cols=101  Identities=11%  Similarity=0.145  Sum_probs=83.8

Q ss_pred             CCCCEEEEeccCCChhhHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEccccchhhcCCCcceeeh
Q 042119          129 VQPKKVAFVGSGPMPLTSIIMAKHHLTSTHFDNFDIDEAANDVARSIVASDAEFEGRMKFLTRDIMEVKEQLGEYDCIFL  208 (286)
Q Consensus       129 ~~~~~VL~IG~G~lp~tai~lA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~g~l~~~i~f~~~D~~~~~~~l~~fD~V~~  208 (286)
                      .++.+|||||||+ |..+..+++   .+.+|+|+|+|+++++.|++.+.      .+++|+++|+.+++.. +.||+|+.
T Consensus        44 ~~~~~vLDiGcG~-G~~~~~l~~---~~~~v~~vD~s~~~~~~a~~~~~------~~~~~~~~d~~~~~~~-~~fD~v~~  112 (220)
T 3hnr_A           44 KSFGNVLEFGVGT-GNLTNKLLL---AGRTVYGIEPSREMRMIAKEKLP------KEFSITEGDFLSFEVP-TSIDTIVS  112 (220)
T ss_dssp             TCCSEEEEECCTT-SHHHHHHHH---TTCEEEEECSCHHHHHHHHHHSC------TTCCEESCCSSSCCCC-SCCSEEEE
T ss_pred             cCCCeEEEeCCCC-CHHHHHHHh---CCCeEEEEeCCHHHHHHHHHhCC------CceEEEeCChhhcCCC-CCeEEEEE
Confidence            5788999999996 666777887   48999999999999999998733      4789999999887766 78999987


Q ss_pred             hhhc-cCChhHHHHHHHHHHhhccCCcEEEEee
Q 042119          209 AALV-GMSKEEKLTILGHIRKYMKDGGILLVRS  240 (286)
Q Consensus       209 aalv-g~~~~~k~~vl~~l~~~l~pgg~lv~r~  240 (286)
                      ...+ ..+...+..+++++.+.|||||.+++.+
T Consensus       113 ~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~i~~  145 (220)
T 3hnr_A          113 TYAFHHLTDDEKNVAIAKYSQLLNKGGKIVFAD  145 (220)
T ss_dssp             ESCGGGSCHHHHHHHHHHHHHHSCTTCEEEEEE
T ss_pred             CcchhcCChHHHHHHHHHHHHhcCCCCEEEEEe
Confidence            6544 4444555569999999999999999975

>3i53_A O-methyltransferase; CO-complex, rossmann-like fold; HET: SAH; 2.08A {Streptomyces carzinostaticus subsp} PDB: 3i58_A* 3i5u_A* 3i64_A*

Probab=99.51  E-value=3e-13  Score=124.84  Aligned_cols=145  Identities=16%  Similarity=0.116  Sum_probs=106.3

Q ss_pred             CCCCCEEEEeccCCChhhHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEccccchhhcCCCcceee
Q 042119          128 VVQPKKVAFVGSGPMPLTSIIMAKHHLTSTHFDNFDIDEAANDVARSIVASDAEFEGRMKFLTRDIMEVKEQLGEYDCIF  207 (286)
Q Consensus       128 ~~~~~~VL~IG~G~lp~tai~lA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~g~l~~~i~f~~~D~~~~~~~l~~fD~V~  207 (286)
                      ..++.+|+|||||+ |..+..+++ .+|+.+++++|+ |++++.|++.+...| +.++|+|+.+|..+ +.+. +||+|+
T Consensus       167 ~~~~~~vlDvG~G~-G~~~~~l~~-~~p~~~~~~~D~-~~~~~~a~~~~~~~~-~~~~v~~~~~d~~~-~~p~-~~D~v~  240 (332)
T 3i53_A          167 WAALGHVVDVGGGS-GGLLSALLT-AHEDLSGTVLDL-QGPASAAHRRFLDTG-LSGRAQVVVGSFFD-PLPA-GAGGYV  240 (332)
T ss_dssp             CGGGSEEEEETCTT-SHHHHHHHH-HCTTCEEEEEEC-HHHHHHHHHHHHHTT-CTTTEEEEECCTTS-CCCC-SCSEEE
T ss_pred             CCCCCEEEEeCCCh-hHHHHHHHH-HCCCCeEEEecC-HHHHHHHHHhhhhcC-cCcCeEEecCCCCC-CCCC-CCcEEE
Confidence            35678999999997 566677777 478999999999 999999999999988 78899999999863 2222 799999


Q ss_pred             hhhhc-cCChhHHHHHHHHHHhhccCCcEEEEeec---Ccceeee----------cccCCccc---c---cCcEEEEEec
Q 042119          208 LAALV-GMSKEEKLTILGHIRKYMKDGGILLVRSA---KGARAFL----------YPVVVEHD---L---LDFEVLSAVH  267 (286)
Q Consensus       208 ~aalv-g~~~~~k~~vl~~l~~~l~pgg~lv~r~~---~g~r~~l----------yp~v~~~~---l---~gf~~~~~~~  267 (286)
                      ....+ .++.+...++++++++.|+|||.+++.+.   .......          ......++   +   .||+...+. 
T Consensus       241 ~~~vlh~~~~~~~~~~l~~~~~~L~pgG~l~i~e~~~~~~~~~~~~d~~~~~~~~~~~~t~~e~~~ll~~aGf~~~~~~-  319 (332)
T 3i53_A          241 LSAVLHDWDDLSAVAILRRCAEAAGSGGVVLVIEAVAGDEHAGTGMDLRMLTYFGGKERSLAELGELAAQAGLAVRAAH-  319 (332)
T ss_dssp             EESCGGGSCHHHHHHHHHHHHHHHTTTCEEEEEECCCC---CCHHHHHHHHHHHSCCCCCHHHHHHHHHHTTEEEEEEE-
T ss_pred             EehhhccCCHHHHHHHHHHHHHhcCCCCEEEEEeecCCCCCccHHHHHHHHhhCCCCCCCHHHHHHHHHHCCCEEEEEE-
Confidence            76544 56666678999999999999999998753   1100000          00111111   1   599987665 


Q ss_pred             CcccceeeeEEEee
Q 042119          268 PNDDVINSVVLVRN  281 (286)
Q Consensus       268 P~~~vinsvi~~r~  281 (286)
                      |.+.  -++|.+|+
T Consensus       320 ~~~~--~~vie~r~  331 (332)
T 3i53_A          320 PISY--VSIVEMTA  331 (332)
T ss_dssp             ECSS--SEEEEEEE
T ss_pred             ECCC--cEEEEEee
Confidence            4444  78888886

>3ujc_A Phosphoethanolamine N-methyltransferase; parasite; HET: PC; 1.19A {Plasmodium falciparum} PDB: 3uj9_A* 3uj6_A* 3uj7_A* 3uj8_A* 3uja_A 3ujb_A* 4fgz_A* 3ujd_A*

Probab=99.51  E-value=4.9e-14  Score=124.36  Aligned_cols=111  Identities=23%  Similarity=0.334  Sum_probs=90.5

Q ss_pred             HHhcCCCCCCEEEEeccCCChhhHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEccccchhhcCCC
Q 042119          123 LSENGVVQPKKVAFVGSGPMPLTSIIMAKHHLTSTHFDNFDIDEAANDVARSIVASDAEFEGRMKFLTRDIMEVKEQLGE  202 (286)
Q Consensus       123 l~~~~~~~~~~VL~IG~G~lp~tai~lA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~g~l~~~i~f~~~D~~~~~~~l~~  202 (286)
                      +......++.+|||||||+ |..+..++++ + +++|+|+|+|+++++.|++.....    .+++|+++|+.+.+.+.+.
T Consensus        48 ~~~~~~~~~~~vLdiG~G~-G~~~~~l~~~-~-~~~v~~vD~s~~~~~~a~~~~~~~----~~~~~~~~d~~~~~~~~~~  120 (266)
T 3ujc_A           48 LSDIELNENSKVLDIGSGL-GGGCMYINEK-Y-GAHTHGIDICSNIVNMANERVSGN----NKIIFEANDILTKEFPENN  120 (266)
T ss_dssp             TTTCCCCTTCEEEEETCTT-SHHHHHHHHH-H-CCEEEEEESCHHHHHHHHHTCCSC----TTEEEEECCTTTCCCCTTC
T ss_pred             HHhcCCCCCCEEEEECCCC-CHHHHHHHHH-c-CCEEEEEeCCHHHHHHHHHHhhcC----CCeEEEECccccCCCCCCc
Confidence            3344567889999999996 6667778773 2 899999999999999999975432    5899999999887665568


Q ss_pred             cceeehhhhc-cCChhHHHHHHHHHHhhccCCcEEEEee
Q 042119          203 YDCIFLAALV-GMSKEEKLTILGHIRKYMKDGGILLVRS  240 (286)
Q Consensus       203 fD~V~~aalv-g~~~~~k~~vl~~l~~~l~pgg~lv~r~  240 (286)
                      ||+|+....+ .++.++...+++++.+.|+|||.+++.+
T Consensus       121 fD~v~~~~~l~~~~~~~~~~~l~~~~~~L~pgG~l~~~~  159 (266)
T 3ujc_A          121 FDLIYSRDAILALSLENKNKLFQKCYKWLKPTGTLLITD  159 (266)
T ss_dssp             EEEEEEESCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred             EEEEeHHHHHHhcChHHHHHHHHHHHHHcCCCCEEEEEE
Confidence            9999976443 4455788899999999999999999976

>2hnk_A SAM-dependent O-methyltransferase; modified rossman fold; HET: SAH; 2.30A {Leptospira interrogans}

Probab=99.51  E-value=5.4e-14  Score=123.95  Aligned_cols=105  Identities=23%  Similarity=0.289  Sum_probs=88.5

Q ss_pred             CCCCEEEEeccCCChhhHHHHHhhcCC-CcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEccccchhhcC-------
Q 042119          129 VQPKKVAFVGSGPMPLTSIIMAKHHLT-STHFDNFDIDEAANDVARSIVASDAEFEGRMKFLTRDIMEVKEQL-------  200 (286)
Q Consensus       129 ~~~~~VL~IG~G~lp~tai~lA~~~~~-g~~V~~iDid~~ai~~Ar~~~~~~g~l~~~i~f~~~D~~~~~~~l-------  200 (286)
                      .++++||+||||+ |..++.+|+. .+ +++|+++|+|+++++.|++.++..| +.++++|+++|+.+....+       
T Consensus        59 ~~~~~VLdiG~G~-G~~~~~la~~-~~~~~~v~~vD~~~~~~~~a~~~~~~~g-~~~~v~~~~~d~~~~~~~~~~~~~~~  135 (239)
T 2hnk_A           59 SGAKRIIEIGTFT-GYSSLCFASA-LPEDGKILCCDVSEEWTNVARKYWKENG-LENKIFLKLGSALETLQVLIDSKSAP  135 (239)
T ss_dssp             HTCSEEEEECCTT-CHHHHHHHHH-SCTTCEEEEEESCHHHHHHHHHHHHHTT-CGGGEEEEESCHHHHHHHHHHCSSCC
T ss_pred             hCcCEEEEEeCCC-CHHHHHHHHh-CCCCCEEEEEECCHHHHHHHHHHHHHcC-CCCCEEEEECCHHHHHHHHHhhcccc
Confidence            4678999999995 7788888884 44 7999999999999999999999999 6778999999997643321       


Q ss_pred             ----------CCcceeehhhhccCChhHHHHHHHHHHhhccCCcEEEEee
Q 042119          201 ----------GEYDCIFLAALVGMSKEEKLTILGHIRKYMKDGGILLVRS  240 (286)
Q Consensus       201 ----------~~fD~V~~aalvg~~~~~k~~vl~~l~~~l~pgg~lv~r~  240 (286)
                                +.||+||+++..    +....+++.+.+.|+|||++++.+
T Consensus       136 ~~~~~f~~~~~~fD~I~~~~~~----~~~~~~l~~~~~~L~pgG~lv~~~  181 (239)
T 2hnk_A          136 SWASDFAFGPSSIDLFFLDADK----ENYPNYYPLILKLLKPGGLLIADN  181 (239)
T ss_dssp             GGGTTTCCSTTCEEEEEECSCG----GGHHHHHHHHHHHEEEEEEEEEEC
T ss_pred             cccccccCCCCCcCEEEEeCCH----HHHHHHHHHHHHHcCCCeEEEEEc
Confidence                      579999977533    566789999999999999999976

>1xxl_A YCGJ protein; structural genomics, protein structure initiative, PSI, NEW YORK SGX research center for structural genomics, nysgxrc; 2.10A {Bacillus subtilis} SCOP: c.66.1.41 PDB: 2glu_A*

Probab=99.50  E-value=9.5e-14  Score=122.20  Aligned_cols=108  Identities=13%  Similarity=0.140  Sum_probs=89.4

Q ss_pred             cCCCCCCEEEEeccCCChhhHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEccccchhhcCCCcce
Q 042119          126 NGVVQPKKVAFVGSGPMPLTSIIMAKHHLTSTHFDNFDIDEAANDVARSIVASDAEFEGRMKFLTRDIMEVKEQLGEYDC  205 (286)
Q Consensus       126 ~~~~~~~~VL~IG~G~lp~tai~lA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~g~l~~~i~f~~~D~~~~~~~l~~fD~  205 (286)
                      ..+.++.+|||||||+ |..+..+++   .+.+|+++|+|+++++.|++.+...|.  .+++|+++|+.+++...+.||+
T Consensus        17 ~~~~~~~~vLDiGcG~-G~~~~~l~~---~~~~v~~vD~s~~~~~~a~~~~~~~~~--~~v~~~~~d~~~~~~~~~~fD~   90 (239)
T 1xxl_A           17 AECRAEHRVLDIGAGA-GHTALAFSP---YVQECIGVDATKEMVEVASSFAQEKGV--ENVRFQQGTAESLPFPDDSFDI   90 (239)
T ss_dssp             HTCCTTCEEEEESCTT-SHHHHHHGG---GSSEEEEEESCHHHHHHHHHHHHHHTC--CSEEEEECBTTBCCSCTTCEEE
T ss_pred             hCcCCCCEEEEEccCc-CHHHHHHHH---hCCEEEEEECCHHHHHHHHHHHHHcCC--CCeEEEecccccCCCCCCcEEE
Confidence            3568899999999996 666777887   456999999999999999999998883  5899999999887665568999


Q ss_pred             eehhhhccCChhHHHHHHHHHHhhccCCcEEEEee
Q 042119          206 IFLAALVGMSKEEKLTILGHIRKYMKDGGILLVRS  240 (286)
Q Consensus       206 V~~aalvg~~~~~k~~vl~~l~~~l~pgg~lv~r~  240 (286)
                      |+......+ ..+...++.++.+.|+|||.+++.+
T Consensus        91 v~~~~~l~~-~~~~~~~l~~~~~~LkpgG~l~~~~  124 (239)
T 1xxl_A           91 ITCRYAAHH-FSDVRKAVREVARVLKQDGRFLLVD  124 (239)
T ss_dssp             EEEESCGGG-CSCHHHHHHHHHHHEEEEEEEEEEE
T ss_pred             EEECCchhh-ccCHHHHHHHHHHHcCCCcEEEEEE
Confidence            996643321 2466789999999999999999865

>2fca_A TRNA (guanine-N(7)-)-methyltransferase; 2.10A {Bacillus subtilis} SCOP: c.66.1.53

Probab=99.50  E-value=1.6e-13  Score=119.46  Aligned_cols=108  Identities=18%  Similarity=0.155  Sum_probs=85.4

Q ss_pred             CCCCEEEEeccCCChhhHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEccccchhh--cCCCccee
Q 042119          129 VQPKKVAFVGSGPMPLTSIIMAKHHLTSTHFDNFDIDEAANDVARSIVASDAEFEGRMKFLTRDIMEVKE--QLGEYDCI  206 (286)
Q Consensus       129 ~~~~~VL~IG~G~lp~tai~lA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~g~l~~~i~f~~~D~~~~~~--~l~~fD~V  206 (286)
                      .++.+|||||||+ |..++.+|+ ..++.+|+|||+|+++++.|++.++..| + .+++|+++|+.+++.  +.+.||.|
T Consensus        37 ~~~~~vLDiGcG~-G~~~~~la~-~~p~~~v~giD~s~~~l~~a~~~~~~~~-~-~nv~~~~~d~~~l~~~~~~~~~d~v  112 (213)
T 2fca_A           37 NDNPIHIEVGTGK-GQFISGMAK-QNPDINYIGIELFKSVIVTAVQKVKDSE-A-QNVKLLNIDADTLTDVFEPGEVKRV  112 (213)
T ss_dssp             SCCCEEEEECCTT-SHHHHHHHH-HCTTSEEEEECSCHHHHHHHHHHHHHSC-C-SSEEEECCCGGGHHHHCCTTSCCEE
T ss_pred             CCCceEEEEecCC-CHHHHHHHH-HCCCCCEEEEEechHHHHHHHHHHHHcC-C-CCEEEEeCCHHHHHhhcCcCCcCEE
Confidence            4678999999996 666778887 4789999999999999999999999998 4 679999999988653  33579998


Q ss_pred             ehhhhccCChh-------HHHHHHHHHHhhccCCcEEEEee
Q 042119          207 FLAALVGMSKE-------EKLTILGHIRKYMKDGGILLVRS  240 (286)
Q Consensus       207 ~~aalvg~~~~-------~k~~vl~~l~~~l~pgg~lv~r~  240 (286)
                      ++...-.+...       ....+++++.+.|+|||.+++.+
T Consensus       113 ~~~~~~p~~~~~~~~~rl~~~~~l~~~~~~LkpgG~l~~~t  153 (213)
T 2fca_A          113 YLNFSDPWPKKRHEKRRLTYSHFLKKYEEVMGKGGSIHFKT  153 (213)
T ss_dssp             EEESCCCCCSGGGGGGSTTSHHHHHHHHHHHTTSCEEEEEE
T ss_pred             EEECCCCCcCccccccccCcHHHHHHHHHHcCCCCEEEEEe
Confidence            75421111111       02578999999999999999875

>1ve3_A Hypothetical protein PH0226; dimer, riken structural genomics/proteomics initiative, RSGI, structural genomics, unknown function, NPPSFA; HET: SAM; 2.10A {Pyrococcus horikoshii} SCOP: c.66.1.43

Probab=99.50  E-value=3e-13  Score=116.73  Aligned_cols=105  Identities=16%  Similarity=0.197  Sum_probs=85.7

Q ss_pred             CCCCEEEEeccCCChhhHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEccccchhhcCCCcceeeh
Q 042119          129 VQPKKVAFVGSGPMPLTSIIMAKHHLTSTHFDNFDIDEAANDVARSIVASDAEFEGRMKFLTRDIMEVKEQLGEYDCIFL  208 (286)
Q Consensus       129 ~~~~~VL~IG~G~lp~tai~lA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~g~l~~~i~f~~~D~~~~~~~l~~fD~V~~  208 (286)
                      .++.+|||||||++ ..+..+++   .+.+|+++|+|+++++.|++.+...+   .+++++++|+.+.+...+.||+|+.
T Consensus        37 ~~~~~vLDlG~G~G-~~~~~l~~---~~~~v~~vD~s~~~~~~a~~~~~~~~---~~~~~~~~d~~~~~~~~~~~D~v~~  109 (227)
T 1ve3_A           37 KKRGKVLDLACGVG-GFSFLLED---YGFEVVGVDISEDMIRKAREYAKSRE---SNVEFIVGDARKLSFEDKTFDYVIF  109 (227)
T ss_dssp             CSCCEEEEETCTTS-HHHHHHHH---TTCEEEEEESCHHHHHHHHHHHHHTT---CCCEEEECCTTSCCSCTTCEEEEEE
T ss_pred             CCCCeEEEEeccCC-HHHHHHHH---cCCEEEEEECCHHHHHHHHHHHHhcC---CCceEEECchhcCCCCCCcEEEEEE
Confidence            45889999999974 55577777   34599999999999999999988776   5899999999876544457999986


Q ss_pred             hhhc-cCChhHHHHHHHHHHhhccCCcEEEEee
Q 042119          209 AALV-GMSKEEKLTILGHIRKYMKDGGILLVRS  240 (286)
Q Consensus       209 aalv-g~~~~~k~~vl~~l~~~l~pgg~lv~r~  240 (286)
                      .... ..+.++..++++++.+.|+|||.+++..
T Consensus       110 ~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~  142 (227)
T 1ve3_A          110 IDSIVHFEPLELNQVFKEVRRVLKPSGKFIMYF  142 (227)
T ss_dssp             ESCGGGCCHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred             cCchHhCCHHHHHHHHHHHHHHcCCCcEEEEEe
Confidence            5431 3455677889999999999999998865

>2r3s_A Uncharacterized protein; methyltransferase domain, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE; 2.15A {Nostoc punctiforme}

Probab=99.50  E-value=1.4e-13  Score=126.59  Aligned_cols=107  Identities=19%  Similarity=0.268  Sum_probs=88.6

Q ss_pred             CCCCEEEEeccCCChhhHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEccccchhhcCCCcceeeh
Q 042119          129 VQPKKVAFVGSGPMPLTSIIMAKHHLTSTHFDNFDIDEAANDVARSIVASDAEFEGRMKFLTRDIMEVKEQLGEYDCIFL  208 (286)
Q Consensus       129 ~~~~~VL~IG~G~lp~tai~lA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~g~l~~~i~f~~~D~~~~~~~l~~fD~V~~  208 (286)
                      .++.+|||||||+ |..+..+++ .+++.+++++|++ .+++.|++.+...| +.++++|+++|..+.+.+ ++||+|+.
T Consensus       164 ~~~~~vlDvG~G~-G~~~~~l~~-~~p~~~~~~~D~~-~~~~~a~~~~~~~~-~~~~v~~~~~d~~~~~~~-~~~D~v~~  238 (335)
T 2r3s_A          164 IEPLKVLDISASH-GLFGIAVAQ-HNPNAEIFGVDWA-SVLEVAKENARIQG-VASRYHTIAGSAFEVDYG-NDYDLVLL  238 (335)
T ss_dssp             CCCSEEEEETCTT-CHHHHHHHH-HCTTCEEEEEECH-HHHHHHHHHHHHHT-CGGGEEEEESCTTTSCCC-SCEEEEEE
T ss_pred             CCCCEEEEECCCc-CHHHHHHHH-HCCCCeEEEEecH-HHHHHHHHHHHhcC-CCcceEEEecccccCCCC-CCCcEEEE
Confidence            6789999999997 556667777 3689999999999 99999999999988 677899999999764332 35999997


Q ss_pred             hhhc-cCChhHHHHHHHHHHhhccCCcEEEEee
Q 042119          209 AALV-GMSKEEKLTILGHIRKYMKDGGILLVRS  240 (286)
Q Consensus       209 aalv-g~~~~~k~~vl~~l~~~l~pgg~lv~r~  240 (286)
                      .... .++.++..++++++.+.|+|||.+++.+
T Consensus       239 ~~~l~~~~~~~~~~~l~~~~~~L~pgG~l~i~e  271 (335)
T 2r3s_A          239 PNFLHHFDVATCEQLLRKIKTALAVEGKVIVFD  271 (335)
T ss_dssp             ESCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred             cchhccCCHHHHHHHHHHHHHhCCCCcEEEEEe
Confidence            5433 5566777899999999999999888865

>3pfg_A N-methyltransferase; N,N-dimethyltransferase, SAM binding, DTDP-linked sugar BIND transferase; HET: SAM TLO; 1.35A {Streptomyces fradiae} PDB: 3pfh_A* 3px3_A* 3px2_A*

Probab=99.50  E-value=2.8e-13  Score=120.32  Aligned_cols=99  Identities=10%  Similarity=0.113  Sum_probs=80.7

Q ss_pred             CCCCEEEEeccCCChhhHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEccccchhhcCCCcceeeh
Q 042119          129 VQPKKVAFVGSGPMPLTSIIMAKHHLTSTHFDNFDIDEAANDVARSIVASDAEFEGRMKFLTRDIMEVKEQLGEYDCIFL  208 (286)
Q Consensus       129 ~~~~~VL~IG~G~lp~tai~lA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~g~l~~~i~f~~~D~~~~~~~l~~fD~V~~  208 (286)
                      .++.+|||||||+ |..+..+++   .+.+|+|+|+|+++++.|++..       .+++|+++|+.+++. .+.||+|+.
T Consensus        49 ~~~~~vLDiGcG~-G~~~~~l~~---~~~~v~gvD~s~~~~~~a~~~~-------~~~~~~~~d~~~~~~-~~~fD~v~~  116 (263)
T 3pfg_A           49 PKAASLLDVACGT-GMHLRHLAD---SFGTVEGLELSADMLAIARRRN-------PDAVLHHGDMRDFSL-GRRFSAVTC  116 (263)
T ss_dssp             TTCCEEEEETCTT-SHHHHHHTT---TSSEEEEEESCHHHHHHHHHHC-------TTSEEEECCTTTCCC-SCCEEEEEE
T ss_pred             CCCCcEEEeCCcC-CHHHHHHHH---cCCeEEEEECCHHHHHHHHhhC-------CCCEEEECChHHCCc-cCCcCEEEE
Confidence            4678999999996 666677777   4789999999999999999872       268999999988665 457999987


Q ss_pred             hh-hc-cC-ChhHHHHHHHHHHhhccCCcEEEEe
Q 042119          209 AA-LV-GM-SKEEKLTILGHIRKYMKDGGILLVR  239 (286)
Q Consensus       209 aa-lv-g~-~~~~k~~vl~~l~~~l~pgg~lv~r  239 (286)
                      .. .+ .+ +.++...+++++.+.|+|||.+++.
T Consensus       117 ~~~~l~~~~~~~~~~~~l~~~~~~L~pgG~l~i~  150 (263)
T 3pfg_A          117 MFSSIGHLAGQAELDAALERFAAHVLPDGVVVVE  150 (263)
T ss_dssp             CTTGGGGSCHHHHHHHHHHHHHHTEEEEEEEEEC
T ss_pred             cCchhhhcCCHHHHHHHHHHHHHhcCCCcEEEEE
Confidence            64 33 23 2356778999999999999999995

>3g07_A 7SK snRNA methylphosphate capping enzyme; structural genomics consortium (SGC), methyltransferase, phosphoprotein, S-adenosyl-L-methionine; HET: SAM; 2.65A {Homo sapiens}

Probab=99.49  E-value=3.3e-14  Score=129.56  Aligned_cols=108  Identities=20%  Similarity=0.273  Sum_probs=82.9

Q ss_pred             CCCEEEEeccCCChhhHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCC--------------------------
Q 042119          130 QPKKVAFVGSGPMPLTSIIMAKHHLTSTHFDNFDIDEAANDVARSIVASDAEFE--------------------------  183 (286)
Q Consensus       130 ~~~~VL~IG~G~lp~tai~lA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~g~l~--------------------------  183 (286)
                      ++++|||||||+ |..++.+|+ .+++.+|+|+|+|+.+++.|++.++..+ ..                          
T Consensus        46 ~~~~VLDiGCG~-G~~~~~la~-~~~~~~v~gvDis~~~i~~A~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~  122 (292)
T 3g07_A           46 RGRDVLDLGCNV-GHLTLSIAC-KWGPSRMVGLDIDSRLIHSARQNIRHYL-SEELRLPPQTLEGDPGAEGEEGTTTVRK  122 (292)
T ss_dssp             TTSEEEEESCTT-CHHHHHHHH-HTCCSEEEEEESCHHHHHHHHHTC---------------------------------
T ss_pred             CCCcEEEeCCCC-CHHHHHHHH-HcCCCEEEEECCCHHHHHHHHHHHHhhh-hhhccccccccccccccccccccccccc
Confidence            689999999997 666777887 4678999999999999999999877654 22                          


Q ss_pred             -------------------------------CCeEEEEccccchh-----hcCCCcceeehhhhc-c----CChhHHHHH
Q 042119          184 -------------------------------GRMKFLTRDIMEVK-----EQLGEYDCIFLAALV-G----MSKEEKLTI  222 (286)
Q Consensus       184 -------------------------------~~i~f~~~D~~~~~-----~~l~~fD~V~~aalv-g----~~~~~k~~v  222 (286)
                                                     .+|+|.++|..+..     ...+.||+|+..... .    ++.+...++
T Consensus       123 ~~~~p~~~~~~~g~~~~p~~~~~~~~~~~~p~~v~f~~~d~~~~~~~~~~~~~~~fD~I~~~~vl~~ihl~~~~~~~~~~  202 (292)
T 3g07_A          123 RSCFPASLTASRGPIAAPQVPLDGADTSVFPNNVVFVTGNYVLDRDDLVEAQTPEYDVVLCLSLTKWVHLNWGDEGLKRM  202 (292)
T ss_dssp             -------------------CCSSTTCCSSTTTTEEEEECCCCCSSHHHHTTCCCCEEEEEEESCHHHHHHHHHHHHHHHH
T ss_pred             cccccchhhhccCccccccccccccccccccccceEEecccccCccccccccCCCcCEEEEChHHHHhhhcCCHHHHHHH
Confidence                                           58999999987533     234579999865432 1    134577889


Q ss_pred             HHHHHhhccCCcEEEEee
Q 042119          223 LGHIRKYMKDGGILLVRS  240 (286)
Q Consensus       223 l~~l~~~l~pgg~lv~r~  240 (286)
                      ++++.+.|+|||+|++..
T Consensus       203 l~~~~~~LkpGG~lil~~  220 (292)
T 3g07_A          203 FRRIYRHLRPGGILVLEP  220 (292)
T ss_dssp             HHHHHHHEEEEEEEEEEC
T ss_pred             HHHHHHHhCCCcEEEEec
Confidence            999999999999999964

>1dus_A MJ0882; hypothetical protein, methanococcus jannaschii, structural genomics, BSGC structure funded by NIH; 1.80A {Methanocaldococcus jannaschii} SCOP: c.66.1.4

Probab=99.49  E-value=3.2e-13  Score=112.94  Aligned_cols=112  Identities=18%  Similarity=0.225  Sum_probs=90.2

Q ss_pred             hcCCCCCCEEEEeccCCChhhHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCC-CeEEEEccccchhhcCCCc
Q 042119          125 ENGVVQPKKVAFVGSGPMPLTSIIMAKHHLTSTHFDNFDIDEAANDVARSIVASDAEFEG-RMKFLTRDIMEVKEQLGEY  203 (286)
Q Consensus       125 ~~~~~~~~~VL~IG~G~lp~tai~lA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~g~l~~-~i~f~~~D~~~~~~~l~~f  203 (286)
                      .....++.+||+||||+ |..+..+++   .+.+|+++|+|+++++.|++.+...| +.+ +++++++|+.+... .+.|
T Consensus        47 ~~~~~~~~~vLdiG~G~-G~~~~~~~~---~~~~v~~~D~~~~~~~~a~~~~~~~~-~~~~~~~~~~~d~~~~~~-~~~~  120 (194)
T 1dus_A           47 NVVVDKDDDILDLGCGY-GVIGIALAD---EVKSTTMADINRRAIKLAKENIKLNN-LDNYDIRVVHSDLYENVK-DRKY  120 (194)
T ss_dssp             HCCCCTTCEEEEETCTT-SHHHHHHGG---GSSEEEEEESCHHHHHHHHHHHHHTT-CTTSCEEEEECSTTTTCT-TSCE
T ss_pred             HcccCCCCeEEEeCCCC-CHHHHHHHH---cCCeEEEEECCHHHHHHHHHHHHHcC-CCccceEEEECchhcccc-cCCc
Confidence            34556889999999996 666677887   28999999999999999999999888 444 59999999976332 3579


Q ss_pred             ceeehhhhccCChhHHHHHHHHHHhhccCCcEEEEeecC
Q 042119          204 DCIFLAALVGMSKEEKLTILGHIRKYMKDGGILLVRSAK  242 (286)
Q Consensus       204 D~V~~aalvg~~~~~k~~vl~~l~~~l~pgg~lv~r~~~  242 (286)
                      |+|+......+..+....+++++.+.|+|||.+++....
T Consensus       121 D~v~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~~  159 (194)
T 1dus_A          121 NKIITNPPIRAGKEVLHRIIEEGKELLKDNGEIWVVIQT  159 (194)
T ss_dssp             EEEEECCCSTTCHHHHHHHHHHHHHHEEEEEEEEEEEES
T ss_pred             eEEEECCCcccchhHHHHHHHHHHHHcCCCCEEEEEECC
Confidence            999976543333567778999999999999999997643

>3cgg_A SAM-dependent methyltransferase; NP_600671.1, methyltransferase domain, structural genomics; HET: NHE CIT; 2.00A {Corynebacterium glutamicum atcc 13032}

Probab=99.49  E-value=5.1e-13  Score=111.85  Aligned_cols=138  Identities=16%  Similarity=0.165  Sum_probs=100.5

Q ss_pred             CCCCCEEEEeccCCChhhHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEccccchhhcCCCcceee
Q 042119          128 VVQPKKVAFVGSGPMPLTSIIMAKHHLTSTHFDNFDIDEAANDVARSIVASDAEFEGRMKFLTRDIMEVKEQLGEYDCIF  207 (286)
Q Consensus       128 ~~~~~~VL~IG~G~lp~tai~lA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~g~l~~~i~f~~~D~~~~~~~l~~fD~V~  207 (286)
                      +.++.+||+||||+ |..+..+++   .+.+|+++|+|+++++.|++..       .+++++++|+.+.+...+.||+|+
T Consensus        44 ~~~~~~vLdiG~G~-G~~~~~l~~---~~~~v~~~D~~~~~~~~a~~~~-------~~~~~~~~d~~~~~~~~~~~D~i~  112 (195)
T 3cgg_A           44 APRGAKILDAGCGQ-GRIGGYLSK---QGHDVLGTDLDPILIDYAKQDF-------PEARWVVGDLSVDQISETDFDLIV  112 (195)
T ss_dssp             SCTTCEEEEETCTT-THHHHHHHH---TTCEEEEEESCHHHHHHHHHHC-------TTSEEEECCTTTSCCCCCCEEEEE
T ss_pred             ccCCCeEEEECCCC-CHHHHHHHH---CCCcEEEEcCCHHHHHHHHHhC-------CCCcEEEcccccCCCCCCceeEEE
Confidence            56889999999996 666777887   4789999999999999999862       358999999987655445799999


Q ss_pred             hh-hhc-cCChhHHHHHHHHHHhhccCCcEEEEeecCcceeeecccCCccc------ccCcEEEEEecCcc------cce
Q 042119          208 LA-ALV-GMSKEEKLTILGHIRKYMKDGGILLVRSAKGARAFLYPVVVEHD------LLDFEVLSAVHPND------DVI  273 (286)
Q Consensus       208 ~a-alv-g~~~~~k~~vl~~l~~~l~pgg~lv~r~~~g~r~~lyp~v~~~~------l~gf~~~~~~~P~~------~vi  273 (286)
                      .. ... ..+.++...+++++.+.|+|||.+++....+- .     ....+      -.||++........      ..-
T Consensus       113 ~~~~~~~~~~~~~~~~~l~~~~~~l~~~G~l~~~~~~~~-~-----~~~~~~~~~l~~~Gf~~~~~~~~~~~~~~~~~~~  186 (195)
T 3cgg_A          113 SAGNVMGFLAEDGREPALANIHRALGADGRAVIGFGAGR-G-----WVFGDFLEVAERVGLELENAFESWDLKPFVQGSE  186 (195)
T ss_dssp             ECCCCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEETTS-S-----CCHHHHHHHHHHHTEEEEEEESSTTCCBCCTTCS
T ss_pred             ECCcHHhhcChHHHHHHHHHHHHHhCCCCEEEEEeCCCC-C-----cCHHHHHHHHHHcCCEEeeeecccccCcCCCCCc
Confidence            75 332 34556778999999999999999998764321 1     11111      14898876654322      233


Q ss_pred             eeeEEEeec
Q 042119          274 NSVVLVRNS  282 (286)
Q Consensus       274 nsvi~~r~~  282 (286)
                      .-++++||+
T Consensus       187 ~~~~v~~k~  195 (195)
T 3cgg_A          187 FLVAVFTKK  195 (195)
T ss_dssp             EEEEEEEEC
T ss_pred             EEEEEEecC
Confidence            447777774

>3sm3_A SAM-dependent methyltransferases; NESG, structural genomics, PSI-biology, protein structure in northeast structural genomics; 2.20A {Methanosarcina mazei}

Probab=99.49  E-value=1.2e-13  Score=119.53  Aligned_cols=107  Identities=17%  Similarity=0.299  Sum_probs=88.0

Q ss_pred             CCCCEEEEeccCCChhhHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCC----CCCeEEEEccccchhhcCCCcc
Q 042119          129 VQPKKVAFVGSGPMPLTSIIMAKHHLTSTHFDNFDIDEAANDVARSIVASDAEF----EGRMKFLTRDIMEVKEQLGEYD  204 (286)
Q Consensus       129 ~~~~~VL~IG~G~lp~tai~lA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~g~l----~~~i~f~~~D~~~~~~~l~~fD  204 (286)
                      .++.+|||||||+ |..+..+++   .+.+|+++|+|+.+++.|++.+...+ +    ..+++|.++|+.+++...+.||
T Consensus        29 ~~~~~vLdiG~G~-G~~~~~l~~---~~~~v~~vD~s~~~~~~a~~~~~~~~-~~~~~~~~~~~~~~d~~~~~~~~~~~D  103 (235)
T 3sm3_A           29 QEDDEILDIGCGS-GKISLELAS---KGYSVTGIDINSEAIRLAETAARSPG-LNQKTGGKAEFKVENASSLSFHDSSFD  103 (235)
T ss_dssp             CTTCEEEEETCTT-SHHHHHHHH---TTCEEEEEESCHHHHHHHHHHTTCCS-CCSSSSCEEEEEECCTTSCCSCTTCEE
T ss_pred             CCCCeEEEECCCC-CHHHHHHHh---CCCeEEEEECCHHHHHHHHHHHHhcC-CccccCcceEEEEecccccCCCCCcee
Confidence            5789999999997 667778887   48899999999999999999988777 4    3468999999988766556899


Q ss_pred             eeehhhhc-cC-ChhHHHHHHHHHHhhccCCcEEEEee
Q 042119          205 CIFLAALV-GM-SKEEKLTILGHIRKYMKDGGILLVRS  240 (286)
Q Consensus       205 ~V~~aalv-g~-~~~~k~~vl~~l~~~l~pgg~lv~r~  240 (286)
                      +|+....+ .+ +.+...++++++.+.|+|||++++.+
T Consensus       104 ~v~~~~~l~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~  141 (235)
T 3sm3_A          104 FAVMQAFLTSVPDPKERSRIIKEVFRVLKPGAYLYLVE  141 (235)
T ss_dssp             EEEEESCGGGCCCHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred             EEEEcchhhcCCCHHHHHHHHHHHHHHcCCCeEEEEEE
Confidence            99876544 33 34455689999999999999999864

>3dxy_A TRNA (guanine-N(7)-)-methyltransferase; rossmann fold methyltransferase, tRNA modification, S-adenosyl-L-methionine, TR processing; HET: SAM; 1.50A {Escherichia coli} PDB: 3dxx_A* 3dxz_A*

Probab=99.49  E-value=9.6e-14  Score=121.94  Aligned_cols=108  Identities=13%  Similarity=0.187  Sum_probs=85.8

Q ss_pred             CCCCEEEEeccCCChhhHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEccccchhh---cCCCcce
Q 042119          129 VQPKKVAFVGSGPMPLTSIIMAKHHLTSTHFDNFDIDEAANDVARSIVASDAEFEGRMKFLTRDIMEVKE---QLGEYDC  205 (286)
Q Consensus       129 ~~~~~VL~IG~G~lp~tai~lA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~g~l~~~i~f~~~D~~~~~~---~l~~fD~  205 (286)
                      ..+.+|||||||+ |..++.+|+ ..+++.|+|||+|+++++.|++.++..| + .+++|+++|+.++..   +.+.||.
T Consensus        33 ~~~~~vLDiGcG~-G~~~~~lA~-~~p~~~v~giD~s~~~l~~a~~~~~~~~-l-~nv~~~~~Da~~~l~~~~~~~~~d~  108 (218)
T 3dxy_A           33 REAPVTLEIGFGM-GASLVAMAK-DRPEQDFLGIEVHSPGVGACLASAHEEG-L-SNLRVMCHDAVEVLHKMIPDNSLRM  108 (218)
T ss_dssp             SCCCEEEEESCTT-CHHHHHHHH-HCTTSEEEEECSCHHHHHHHHHHHHHTT-C-SSEEEECSCHHHHHHHHSCTTCEEE
T ss_pred             CCCCeEEEEeeeC-hHHHHHHHH-HCCCCeEEEEEecHHHHHHHHHHHHHhC-C-CcEEEEECCHHHHHHHHcCCCChhe
Confidence            3678999999995 777788887 4789999999999999999999999998 4 569999999988532   3457999


Q ss_pred             eehhhhccCCh--hHH-----HHHHHHHHhhccCCcEEEEee
Q 042119          206 IFLAALVGMSK--EEK-----LTILGHIRKYMKDGGILLVRS  240 (286)
Q Consensus       206 V~~aalvg~~~--~~k-----~~vl~~l~~~l~pgg~lv~r~  240 (286)
                      |++...-.++.  ..|     ..+++.+.+.|||||.+++.+
T Consensus       109 v~~~~~~p~~~~~~~~rr~~~~~~l~~~~r~LkpGG~l~i~t  150 (218)
T 3dxy_A          109 VQLFFPDPWHKARHNKRRIVQVPFAELVKSKLQLGGVFHMAT  150 (218)
T ss_dssp             EEEESCCCCCSGGGGGGSSCSHHHHHHHHHHEEEEEEEEEEE
T ss_pred             EEEeCCCCccchhhhhhhhhhHHHHHHHHHHcCCCcEEEEEe
Confidence            98642222221  111     259999999999999999976

>1l3i_A Precorrin-6Y methyltransferase/putative decarboxylase; structural genomics, beta barrel, rossmann fold, tetramer; HET: SAH; 1.95A {Methanothermobacterthermautotrophicus} SCOP: c.66.1.22 PDB: 1kxz_A 1l3b_A 1f38_A 1l3c_A*

Probab=99.48  E-value=2.6e-13  Score=113.34  Aligned_cols=106  Identities=16%  Similarity=0.168  Sum_probs=88.0

Q ss_pred             cCCCCCCEEEEeccCCChhhHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEccccchhhcCCCcce
Q 042119          126 NGVVQPKKVAFVGSGPMPLTSIIMAKHHLTSTHFDNFDIDEAANDVARSIVASDAEFEGRMKFLTRDIMEVKEQLGEYDC  205 (286)
Q Consensus       126 ~~~~~~~~VL~IG~G~lp~tai~lA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~g~l~~~i~f~~~D~~~~~~~l~~fD~  205 (286)
                      ....++.+||++|||+ |..++.+++   .+.+|+++|+|+++++.|++.+...| +.+++++.++|+.+.....+.||+
T Consensus        29 ~~~~~~~~vldiG~G~-G~~~~~l~~---~~~~v~~~D~~~~~~~~a~~~~~~~~-~~~~~~~~~~d~~~~~~~~~~~D~  103 (192)
T 1l3i_A           29 AEPGKNDVAVDVGCGT-GGVTLELAG---RVRRVYAIDRNPEAISTTEMNLQRHG-LGDNVTLMEGDAPEALCKIPDIDI  103 (192)
T ss_dssp             HCCCTTCEEEEESCTT-SHHHHHHHT---TSSEEEEEESCHHHHHHHHHHHHHTT-CCTTEEEEESCHHHHHTTSCCEEE
T ss_pred             cCCCCCCEEEEECCCC-CHHHHHHHH---hcCEEEEEECCHHHHHHHHHHHHHcC-CCcceEEEecCHHHhcccCCCCCE
Confidence            3567889999999997 666777877   33899999999999999999999988 677999999999773333358999


Q ss_pred             eehhhhccCChhHHHHHHHHHHhhccCCcEEEEee
Q 042119          206 IFLAALVGMSKEEKLTILGHIRKYMKDGGILLVRS  240 (286)
Q Consensus       206 V~~aalvg~~~~~k~~vl~~l~~~l~pgg~lv~r~  240 (286)
                      |+.....    +....+++.+.+.|+|||.+++..
T Consensus       104 v~~~~~~----~~~~~~l~~~~~~l~~gG~l~~~~  134 (192)
T 1l3i_A          104 AVVGGSG----GELQEILRIIKDKLKPGGRIIVTA  134 (192)
T ss_dssp             EEESCCT----TCHHHHHHHHHHTEEEEEEEEEEE
T ss_pred             EEECCch----HHHHHHHHHHHHhcCCCcEEEEEe
Confidence            9976433    355789999999999999999865

>1yzh_A TRNA (guanine-N(7)-)-methyltransferase; alpha-beta-alpha sandwich, S-adenosylmeth dependent, structural genomics, PSI; 2.02A {Streptococcus pneumoniae} SCOP: c.66.1.53

Probab=99.48  E-value=3.6e-13  Score=116.54  Aligned_cols=109  Identities=20%  Similarity=0.178  Sum_probs=86.7

Q ss_pred             CCCCEEEEeccCCChhhHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEccccchh--hcCCCccee
Q 042119          129 VQPKKVAFVGSGPMPLTSIIMAKHHLTSTHFDNFDIDEAANDVARSIVASDAEFEGRMKFLTRDIMEVK--EQLGEYDCI  206 (286)
Q Consensus       129 ~~~~~VL~IG~G~lp~tai~lA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~g~l~~~i~f~~~D~~~~~--~~l~~fD~V  206 (286)
                      .++.+|||||||+ |..++.+|+ ..|+.+|+|+|+|+++++.|++.+...| + ++++|+++|+.+++  ...+.||+|
T Consensus        40 ~~~~~vLDiGcG~-G~~~~~la~-~~p~~~v~gvD~s~~~l~~a~~~~~~~~-~-~~v~~~~~d~~~~~~~~~~~~~D~i  115 (214)
T 1yzh_A           40 NDNPIHVEVGSGK-GAFVSGMAK-QNPDINYIGIDIQKSVLSYALDKVLEVG-V-PNIKLLWVDGSDLTDYFEDGEIDRL  115 (214)
T ss_dssp             SCCCEEEEESCTT-SHHHHHHHH-HCTTSEEEEEESCHHHHHHHHHHHHHHC-C-SSEEEEECCSSCGGGTSCTTCCSEE
T ss_pred             CCCCeEEEEccCc-CHHHHHHHH-HCCCCCEEEEEcCHHHHHHHHHHHHHcC-C-CCEEEEeCCHHHHHhhcCCCCCCEE
Confidence            4678999999996 666677887 4688999999999999999999999999 4 78999999998865  233579999


Q ss_pred             ehhhhccCChh-------HHHHHHHHHHhhccCCcEEEEeec
Q 042119          207 FLAALVGMSKE-------EKLTILGHIRKYMKDGGILLVRSA  241 (286)
Q Consensus       207 ~~aalvg~~~~-------~k~~vl~~l~~~l~pgg~lv~r~~  241 (286)
                      +......+...       ....+++.+.+.|+|||.+++.+.
T Consensus       116 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~  157 (214)
T 1yzh_A          116 YLNFSDPWPKKRHEKRRLTYKTFLDTFKRILPENGEIHFKTD  157 (214)
T ss_dssp             EEESCCCCCSGGGGGGSTTSHHHHHHHHHHSCTTCEEEEEES
T ss_pred             EEECCCCccccchhhhccCCHHHHHHHHHHcCCCcEEEEEeC
Confidence            86532222110       115799999999999999999763

>3bxo_A N,N-dimethyltransferase; desosamine, sugar, carbohydrate, antibiotic, SAM, adoMet; HET: SAM UPP; 2.00A {Streptomyces venezuelae}

Probab=99.48  E-value=4.7e-13  Score=116.35  Aligned_cols=100  Identities=12%  Similarity=0.164  Sum_probs=79.3

Q ss_pred             CCCCEEEEeccCCChhhHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEccccchhhcCCCcceee-
Q 042119          129 VQPKKVAFVGSGPMPLTSIIMAKHHLTSTHFDNFDIDEAANDVARSIVASDAEFEGRMKFLTRDIMEVKEQLGEYDCIF-  207 (286)
Q Consensus       129 ~~~~~VL~IG~G~lp~tai~lA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~g~l~~~i~f~~~D~~~~~~~l~~fD~V~-  207 (286)
                      .++.+||+||||+ |..+..+++   .+.+|+++|+|+++++.|++..       .+++++++|+.+.+. .+.||+|+ 
T Consensus        39 ~~~~~vLdiG~G~-G~~~~~l~~---~~~~v~~~D~s~~~~~~a~~~~-------~~~~~~~~d~~~~~~-~~~~D~v~~  106 (239)
T 3bxo_A           39 PEASSLLDVACGT-GTHLEHFTK---EFGDTAGLELSEDMLTHARKRL-------PDATLHQGDMRDFRL-GRKFSAVVS  106 (239)
T ss_dssp             TTCCEEEEETCTT-SHHHHHHHH---HHSEEEEEESCHHHHHHHHHHC-------TTCEEEECCTTTCCC-SSCEEEEEE
T ss_pred             CCCCeEEEecccC-CHHHHHHHH---hCCcEEEEeCCHHHHHHHHHhC-------CCCEEEECCHHHccc-CCCCcEEEE
Confidence            6779999999997 555667777   2459999999999999999862       368999999987654 35799999 


Q ss_pred             hh-hhccC-ChhHHHHHHHHHHhhccCCcEEEEee
Q 042119          208 LA-ALVGM-SKEEKLTILGHIRKYMKDGGILLVRS  240 (286)
Q Consensus       208 ~a-alvg~-~~~~k~~vl~~l~~~l~pgg~lv~r~  240 (286)
                      .. .+..+ +.++..++++++.+.|+|||.+++..
T Consensus       107 ~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~  141 (239)
T 3bxo_A          107 MFSSVGYLKTTEELGAAVASFAEHLEPGGVVVVEP  141 (239)
T ss_dssp             CTTGGGGCCSHHHHHHHHHHHHHTEEEEEEEEECC
T ss_pred             cCchHhhcCCHHHHHHHHHHHHHhcCCCeEEEEEe
Confidence            33 22222 34677899999999999999999964

>1nt2_A Fibrillarin-like PRE-rRNA processing protein; adeMet, binding motif, RNA binding protein; HET: SAM; 2.90A {Archaeoglobus fulgidus} SCOP: c.66.1.3

Probab=99.48  E-value=3.2e-13  Score=117.82  Aligned_cols=105  Identities=11%  Similarity=0.122  Sum_probs=79.2

Q ss_pred             CCCCCCEEEEeccCCChhhHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEccccchh---hcCCCc
Q 042119          127 GVVQPKKVAFVGSGPMPLTSIIMAKHHLTSTHFDNFDIDEAANDVARSIVASDAEFEGRMKFLTRDIMEVK---EQLGEY  203 (286)
Q Consensus       127 ~~~~~~~VL~IG~G~lp~tai~lA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~g~l~~~i~f~~~D~~~~~---~~l~~f  203 (286)
                      .+.++.+|||||||+ |..+..+|+. .++++|+|+|+|+++++.+.+.++..    .++.++++|+.+..   ...+.|
T Consensus        54 ~~~~g~~VLDlGcGt-G~~~~~la~~-~~~~~V~gvD~s~~~l~~~~~~a~~~----~~v~~~~~d~~~~~~~~~~~~~f  127 (210)
T 1nt2_A           54 KLRGDERVLYLGAAS-GTTVSHLADI-VDEGIIYAVEYSAKPFEKLLELVRER----NNIIPLLFDASKPWKYSGIVEKV  127 (210)
T ss_dssp             CCCSSCEEEEETCTT-SHHHHHHHHH-TTTSEEEEECCCHHHHHHHHHHHHHC----SSEEEECSCTTCGGGTTTTCCCE
T ss_pred             CCCCCCEEEEECCcC-CHHHHHHHHH-cCCCEEEEEECCHHHHHHHHHHHhcC----CCeEEEEcCCCCchhhcccccce
Confidence            457889999999997 5566777773 44679999999999988777766643    36899999987641   112579


Q ss_pred             ceeehhhhccCChhHHHHHHHHHHhhccCCcEEEEee
Q 042119          204 DCIFLAALVGMSKEEKLTILGHIRKYMKDGGILLVRS  240 (286)
Q Consensus       204 D~V~~aalvg~~~~~k~~vl~~l~~~l~pgg~lv~r~  240 (286)
                      |+|+....   ...+...+++++.+.|||||.+++..
T Consensus       128 D~V~~~~~---~~~~~~~~l~~~~r~LkpgG~l~i~~  161 (210)
T 1nt2_A          128 DLIYQDIA---QKNQIEILKANAEFFLKEKGEVVIMV  161 (210)
T ss_dssp             EEEEECCC---STTHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred             eEEEEecc---ChhHHHHHHHHHHHHhCCCCEEEEEE
Confidence            99996621   22344456999999999999998874

>4hg2_A Methyltransferase type 11; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: MES; 1.60A {Anaeromyxobacter dehalogenans}

Probab=99.47  E-value=3.6e-14  Score=128.02  Aligned_cols=98  Identities=13%  Similarity=0.091  Sum_probs=80.2

Q ss_pred             CCCCEEEEeccCCChhhHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEccccchhhcCCCcceeeh
Q 042119          129 VQPKKVAFVGSGPMPLTSIIMAKHHLTSTHFDNFDIDEAANDVARSIVASDAEFEGRMKFLTRDIMEVKEQLGEYDCIFL  208 (286)
Q Consensus       129 ~~~~~VL~IG~G~lp~tai~lA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~g~l~~~i~f~~~D~~~~~~~l~~fD~V~~  208 (286)
                      ..+.+|||||||+ |..+..|++   .+.+|+|+|+|++|++.|++.        .+++|+++|+.+++.+.+.||+|+.
T Consensus        38 ~~~~~vLDvGcGt-G~~~~~l~~---~~~~v~gvD~s~~ml~~a~~~--------~~v~~~~~~~e~~~~~~~sfD~v~~  105 (257)
T 4hg2_A           38 PARGDALDCGCGS-GQASLGLAE---FFERVHAVDPGEAQIRQALRH--------PRVTYAVAPAEDTGLPPASVDVAIA  105 (257)
T ss_dssp             SCSSEEEEESCTT-TTTHHHHHT---TCSEEEEEESCHHHHHTCCCC--------TTEEEEECCTTCCCCCSSCEEEEEE
T ss_pred             CCCCCEEEEcCCC-CHHHHHHHH---hCCEEEEEeCcHHhhhhhhhc--------CCceeehhhhhhhcccCCcccEEEE
Confidence            4567999999997 677788887   678999999999999877641        4799999999988777678999987


Q ss_pred             hhhccCChhHHHHHHHHHHhhccCCcEEEEee
Q 042119          209 AALVGMSKEEKLTILGHIRKYMKDGGILLVRS  240 (286)
Q Consensus       209 aalvg~~~~~k~~vl~~l~~~l~pgg~lv~r~  240 (286)
                      +..+++-  +..+++.+++|+|||||+|++-.
T Consensus       106 ~~~~h~~--~~~~~~~e~~rvLkpgG~l~~~~  135 (257)
T 4hg2_A          106 AQAMHWF--DLDRFWAELRRVARPGAVFAAVT  135 (257)
T ss_dssp             CSCCTTC--CHHHHHHHHHHHEEEEEEEEEEE
T ss_pred             eeehhHh--hHHHHHHHHHHHcCCCCEEEEEE
Confidence            6544443  34579999999999999998754

>1ri5_A MRNA capping enzyme; methyltransferase, M7G, messenger RNA CAP, structural genomics, PSI, protein structure initiative; 2.10A {Encephalitozoon cuniculi} SCOP: c.66.1.34 PDB: 1ri2_A* 1ri3_A* 1ri1_A* 1ri4_A 1z3c_A* 2hv9_A*

Probab=99.47  E-value=2.7e-13  Score=121.74  Aligned_cols=109  Identities=16%  Similarity=0.100  Sum_probs=88.7

Q ss_pred             CCCCCEEEEeccCCChhhHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEccccchhh-cCCCccee
Q 042119          128 VVQPKKVAFVGSGPMPLTSIIMAKHHLTSTHFDNFDIDEAANDVARSIVASDAEFEGRMKFLTRDIMEVKE-QLGEYDCI  206 (286)
Q Consensus       128 ~~~~~~VL~IG~G~lp~tai~lA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~g~l~~~i~f~~~D~~~~~~-~l~~fD~V  206 (286)
                      +.++.+|||||||++.++ ..+++.  +..+|+|+|+|+++++.|++.+...| +..+++|+++|+.+.+. ..+.||+|
T Consensus        62 ~~~~~~vLDiGcG~G~~~-~~l~~~--~~~~v~gvD~s~~~~~~a~~~~~~~~-~~~~v~~~~~d~~~~~~~~~~~fD~v  137 (298)
T 1ri5_A           62 TKRGDSVLDLGCGKGGDL-LKYERA--GIGEYYGVDIAEVSINDARVRARNMK-RRFKVFFRAQDSYGRHMDLGKEFDVI  137 (298)
T ss_dssp             CCTTCEEEEETCTTTTTH-HHHHHH--TCSEEEEEESCHHHHHHHHHHHHTSC-CSSEEEEEESCTTTSCCCCSSCEEEE
T ss_pred             CCCCCeEEEECCCCCHHH-HHHHHC--CCCEEEEEECCHHHHHHHHHHHHhcC-CCccEEEEECCccccccCCCCCcCEE
Confidence            467899999999975554 557762  45699999999999999999999888 66789999999987655 34579999


Q ss_pred             ehhhhcc---CChhHHHHHHHHHHhhccCCcEEEEee
Q 042119          207 FLAALVG---MSKEEKLTILGHIRKYMKDGGILLVRS  240 (286)
Q Consensus       207 ~~aalvg---~~~~~k~~vl~~l~~~l~pgg~lv~r~  240 (286)
                      +......   .+.++..++++++.+.|+|||.+++..
T Consensus       138 ~~~~~l~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~  174 (298)
T 1ri5_A          138 SSQFSFHYAFSTSESLDIAQRNIARHLRPGGYFIMTV  174 (298)
T ss_dssp             EEESCGGGGGSSHHHHHHHHHHHHHTEEEEEEEEEEE
T ss_pred             EECchhhhhcCCHHHHHHHHHHHHHhcCCCCEEEEEE
Confidence            8654332   345778899999999999999999875

>2pxx_A Uncharacterized protein MGC2408; structural genomics consortium, SGC, methyltransferase, LOC84291, transferase; HET: SAH; 1.30A {Homo sapiens}

Probab=99.46  E-value=2.4e-13  Score=115.94  Aligned_cols=124  Identities=11%  Similarity=0.266  Sum_probs=91.8

Q ss_pred             cCcCccchhhhhHHHHHHHHhcCCCCCCEEEEeccCCChhhHHHHHhhcCCCc-EEEEEeCChHHHHHHHHHHHhcCCCC
Q 042119          105 LFPYYGNYVKLSKLEYTILSENGVVQPKKVAFVGSGPMPLTSIIMAKHHLTST-HFDNFDIDEAANDVARSIVASDAEFE  183 (286)
Q Consensus       105 ~fpy~~ny~~l~~~E~~~l~~~~~~~~~~VL~IG~G~lp~tai~lA~~~~~g~-~V~~iDid~~ai~~Ar~~~~~~g~l~  183 (286)
                      .|.||..+..+.+.    +.+. ..++.+||+||||+ |..+..+++   .+. +|+++|+|+.+++.|++....    .
T Consensus        22 ~~~~~~~~~~~~~~----l~~~-~~~~~~vLdiGcG~-G~~~~~l~~---~~~~~v~~~D~s~~~~~~a~~~~~~----~   88 (215)
T 2pxx_A           22 PYDWFGDFSSFRAL----LEPE-LRPEDRILVLGCGN-SALSYELFL---GGFPNVTSVDYSSVVVAAMQACYAH----V   88 (215)
T ss_dssp             CCCTTCCHHHHHHH----HGGG-CCTTCCEEEETCTT-CSHHHHHHH---TTCCCEEEEESCHHHHHHHHHHTTT----C
T ss_pred             CcccccCHHHHHHH----HHHh-cCCCCeEEEECCCC-cHHHHHHHH---cCCCcEEEEeCCHHHHHHHHHhccc----C
Confidence            45666666654332    2222 36789999999997 566677777   233 899999999999999998653    2


Q ss_pred             CCeEEEEccccchhhcCCCcceeehhhhc-cC-------------ChhHHHHHHHHHHhhccCCcEEEEeec
Q 042119          184 GRMKFLTRDIMEVKEQLGEYDCIFLAALV-GM-------------SKEEKLTILGHIRKYMKDGGILLVRSA  241 (286)
Q Consensus       184 ~~i~f~~~D~~~~~~~l~~fD~V~~aalv-g~-------------~~~~k~~vl~~l~~~l~pgg~lv~r~~  241 (286)
                      .+++++++|+.+++...+.||+|+..... .+             +.++..++++++.+.|+|||.+++.+.
T Consensus        89 ~~i~~~~~d~~~~~~~~~~fD~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~li~~~~  160 (215)
T 2pxx_A           89 PQLRWETMDVRKLDFPSASFDVVLEKGTLDALLAGERDPWTVSSEGVHTVDQVLSEVSRVLVPGGRFISMTS  160 (215)
T ss_dssp             TTCEEEECCTTSCCSCSSCEEEEEEESHHHHHTTTCSCTTSCCHHHHHHHHHHHHHHHHHEEEEEEEEEEES
T ss_pred             CCcEEEEcchhcCCCCCCcccEEEECcchhhhccccccccccccchhHHHHHHHHHHHHhCcCCCEEEEEeC
Confidence            57999999998865544679999853221 11             134667899999999999999999874

>2ex4_A Adrenal gland protein AD-003; methyltransferase, structural genomics, SGC, structural genomics consortium; HET: SAH; 1.75A {Homo sapiens} SCOP: c.66.1.42

Probab=99.46  E-value=1.6e-13  Score=120.56  Aligned_cols=106  Identities=12%  Similarity=0.215  Sum_probs=85.7

Q ss_pred             CCCEEEEeccCCChhhHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEccccchhhcCCCcceeehh
Q 042119          130 QPKKVAFVGSGPMPLTSIIMAKHHLTSTHFDNFDIDEAANDVARSIVASDAEFEGRMKFLTRDIMEVKEQLGEYDCIFLA  209 (286)
Q Consensus       130 ~~~~VL~IG~G~lp~tai~lA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~g~l~~~i~f~~~D~~~~~~~l~~fD~V~~a  209 (286)
                      ++.+|||||||+ |..+..++++  .+.+|+++|+|+++++.|++.+...|  ..+++|+++|+.+++...+.||+|+..
T Consensus        79 ~~~~vLDiGcG~-G~~~~~l~~~--~~~~v~~vD~s~~~~~~a~~~~~~~~--~~~~~~~~~d~~~~~~~~~~fD~v~~~  153 (241)
T 2ex4_A           79 GTSCALDCGAGI-GRITKRLLLP--LFREVDMVDITEDFLVQAKTYLGEEG--KRVRNYFCCGLQDFTPEPDSYDVIWIQ  153 (241)
T ss_dssp             CCSEEEEETCTT-THHHHHTTTT--TCSEEEEEESCHHHHHHHHHHTGGGG--GGEEEEEECCGGGCCCCSSCEEEEEEE
T ss_pred             CCCEEEEECCCC-CHHHHHHHHh--cCCEEEEEeCCHHHHHHHHHHhhhcC--CceEEEEEcChhhcCCCCCCEEEEEEc
Confidence            589999999996 6666777762  36799999999999999999987764  257999999998776554579999876


Q ss_pred             hhc-cCChhHHHHHHHHHHhhccCCcEEEEee
Q 042119          210 ALV-GMSKEEKLTILGHIRKYMKDGGILLVRS  240 (286)
Q Consensus       210 alv-g~~~~~k~~vl~~l~~~l~pgg~lv~r~  240 (286)
                      ..+ .++.+...++++++.+.|+|||.+++.+
T Consensus       154 ~~l~~~~~~~~~~~l~~~~~~LkpgG~l~i~~  185 (241)
T 2ex4_A          154 WVIGHLTDQHLAEFLRRCKGSLRPNGIIVIKD  185 (241)
T ss_dssp             SCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred             chhhhCCHHHHHHHHHHHHHhcCCCeEEEEEE
Confidence            543 3344446689999999999999999965

>3ou2_A SAM-dependent methyltransferase; O-methyltransferase, SAH; HET: SAH; 1.50A {Streptomyces luridus} PDB: 3ou6_A* 3ou7_A*

Probab=99.46  E-value=2.1e-13  Score=116.83  Aligned_cols=102  Identities=13%  Similarity=0.162  Sum_probs=83.4

Q ss_pred             CCCCCEEEEeccCCChhhHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEccccchhhcCCCcceee
Q 042119          128 VVQPKKVAFVGSGPMPLTSIIMAKHHLTSTHFDNFDIDEAANDVARSIVASDAEFEGRMKFLTRDIMEVKEQLGEYDCIF  207 (286)
Q Consensus       128 ~~~~~~VL~IG~G~lp~tai~lA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~g~l~~~i~f~~~D~~~~~~~l~~fD~V~  207 (286)
                      ..++.+|||||||+ |..+..+++   .+.+|+|+|+|+++++.|++    .|.  .+++|+++|+.+. ...+.||+|+
T Consensus        44 ~~~~~~vLdiG~G~-G~~~~~l~~---~~~~v~~~D~s~~~~~~a~~----~~~--~~~~~~~~d~~~~-~~~~~~D~v~  112 (218)
T 3ou2_A           44 GNIRGDVLELASGT-GYWTRHLSG---LADRVTALDGSAEMIAEAGR----HGL--DNVEFRQQDLFDW-TPDRQWDAVF  112 (218)
T ss_dssp             TTSCSEEEEESCTT-SHHHHHHHH---HSSEEEEEESCHHHHHHHGG----GCC--TTEEEEECCTTSC-CCSSCEEEEE
T ss_pred             CCCCCeEEEECCCC-CHHHHHHHh---cCCeEEEEeCCHHHHHHHHh----cCC--CCeEEEecccccC-CCCCceeEEE
Confidence            35678999999997 666777887   37899999999999999998    452  6899999999876 4446899999


Q ss_pred             hhhhc-cCChhHHHHHHHHHHhhccCCcEEEEee
Q 042119          208 LAALV-GMSKEEKLTILGHIRKYMKDGGILLVRS  240 (286)
Q Consensus       208 ~aalv-g~~~~~k~~vl~~l~~~l~pgg~lv~r~  240 (286)
                      ....+ ..+.+....+++++.+.|+|||.+++.+
T Consensus       113 ~~~~l~~~~~~~~~~~l~~~~~~L~pgG~l~~~~  146 (218)
T 3ou2_A          113 FAHWLAHVPDDRFEAFWESVRSAVAPGGVVEFVD  146 (218)
T ss_dssp             EESCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred             EechhhcCCHHHHHHHHHHHHHHcCCCeEEEEEe
Confidence            76544 4444446899999999999999999875

>2vdw_A Vaccinia virus capping enzyme D1 subunit; nucleotidyltransferase, S-adenosyl-L-methionine, RNA metabolism, mRNA processing, methyltransferase, poxvirus; HET: SAH; 2.70A {Vaccinia virus}

Probab=99.46  E-value=1.8e-13  Score=126.05  Aligned_cols=108  Identities=14%  Similarity=0.157  Sum_probs=80.0

Q ss_pred             CCCEEEEeccCCChhhHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCC-----CeEEEEccc------cchhh
Q 042119          130 QPKKVAFVGSGPMPLTSIIMAKHHLTSTHFDNFDIDEAANDVARSIVASDAEFEG-----RMKFLTRDI------MEVKE  198 (286)
Q Consensus       130 ~~~~VL~IG~G~lp~tai~lA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~g~l~~-----~i~f~~~D~------~~~~~  198 (286)
                      ++.+|||||||+++.+..+++.   .+++|+|+|+|++|++.|++.....+ ...     +++|.++|+      .++..
T Consensus        48 ~~~~VLDlGCG~G~~l~~~~~~---~~~~v~GiD~S~~~l~~A~~~~~~~~-~~~~~~~~~~~f~~~d~~~d~~~~~l~~  123 (302)
T 2vdw_A           48 NKRKVLAIDFGNGADLEKYFYG---EIALLVATDPDADAIARGNERYNKLN-SGIKTKYYKFDYIQETIRSDTFVSSVRE  123 (302)
T ss_dssp             SCCEEEETTCTTTTTHHHHHHT---TCSEEEEEESCHHHHHHHHHHHHHHC-C----CCCEEEEEECCTTSSSHHHHHHT
T ss_pred             CCCeEEEEecCCcHhHHHHHhc---CCCeEEEEECCHHHHHHHHHHHHhcc-ccccccccccchhhhhcccchhhhhhhc
Confidence            4789999999986555544443   56899999999999999999988776 321     278989888      33322


Q ss_pred             --cCCCcceeehhhhcc--CChhHHHHHHHHHHhhccCCcEEEEeec
Q 042119          199 --QLGEYDCIFLAALVG--MSKEEKLTILGHIRKYMKDGGILLVRSA  241 (286)
Q Consensus       199 --~l~~fD~V~~aalvg--~~~~~k~~vl~~l~~~l~pgg~lv~r~~  241 (286)
                        +.+.||+|+....++  ++.+++..+++++++.|||||++++.+.
T Consensus       124 ~~~~~~FD~V~~~~~lhy~~~~~~~~~~l~~~~r~LkpGG~~i~~~~  170 (302)
T 2vdw_A          124 VFYFGKFNIIDWQFAIHYSFHPRHYATVMNNLSELTASGGKVLITTM  170 (302)
T ss_dssp             TCCSSCEEEEEEESCGGGTCSTTTHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred             cccCCCeeEEEECchHHHhCCHHHHHHHHHHHHHHcCCCCEEEEEeC
Confidence              235799997443221  2335667999999999999999998764

>3lbf_A Protein-L-isoaspartate O-methyltransferase; modified rossman-type fold, S-adenosyl-L- methionine; HET: SAH; 1.80A {Escherichia coli}

Probab=99.46  E-value=2.8e-13  Score=116.29  Aligned_cols=105  Identities=15%  Similarity=0.148  Sum_probs=85.5

Q ss_pred             hcCCCCCCEEEEeccCCChhhHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEccccchhhcCCCcc
Q 042119          125 ENGVVQPKKVAFVGSGPMPLTSIIMAKHHLTSTHFDNFDIDEAANDVARSIVASDAEFEGRMKFLTRDIMEVKEQLGEYD  204 (286)
Q Consensus       125 ~~~~~~~~~VL~IG~G~lp~tai~lA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~g~l~~~i~f~~~D~~~~~~~l~~fD  204 (286)
                      .....++.+||+||||+ |..+..+++   .+.+|+++|+|+++++.|++.++..| + .+++|+++|+.+.....+.||
T Consensus        72 ~l~~~~~~~vLdiG~G~-G~~~~~la~---~~~~v~~vD~~~~~~~~a~~~~~~~~-~-~~v~~~~~d~~~~~~~~~~~D  145 (210)
T 3lbf_A           72 LLELTPQSRVLEIGTGS-GYQTAILAH---LVQHVCSVERIKGLQWQARRRLKNLD-L-HNVSTRHGDGWQGWQARAPFD  145 (210)
T ss_dssp             HTTCCTTCEEEEECCTT-SHHHHHHHH---HSSEEEEEESCHHHHHHHHHHHHHTT-C-CSEEEEESCGGGCCGGGCCEE
T ss_pred             hcCCCCCCEEEEEcCCC-CHHHHHHHH---hCCEEEEEecCHHHHHHHHHHHHHcC-C-CceEEEECCcccCCccCCCcc
Confidence            34567899999999996 667788888   37999999999999999999999998 4 489999999987655556899


Q ss_pred             eeehhhhccCChhHHHHHHHHHHhhccCCcEEEEeecC
Q 042119          205 CIFLAALVGMSKEEKLTILGHIRKYMKDGGILLVRSAK  242 (286)
Q Consensus       205 ~V~~aalvg~~~~~k~~vl~~l~~~l~pgg~lv~r~~~  242 (286)
                      +|+.......-       .+.+.+.|+|||++++.-..
T Consensus       146 ~i~~~~~~~~~-------~~~~~~~L~pgG~lv~~~~~  176 (210)
T 3lbf_A          146 AIIVTAAPPEI-------PTALMTQLDEGGILVLPVGE  176 (210)
T ss_dssp             EEEESSBCSSC-------CTHHHHTEEEEEEEEEEECS
T ss_pred             EEEEccchhhh-------hHHHHHhcccCcEEEEEEcC
Confidence            99987544221       12588999999999997654

>3evz_A Methyltransferase; NYSGXRC, NEW YORK SGX research CE structural genomics, protein structure initiative, pyrococc furiosus, PSI-2; 2.20A {Pyrococcus furiosus}

Probab=99.46  E-value=4.4e-13  Score=116.59  Aligned_cols=148  Identities=14%  Similarity=0.167  Sum_probs=98.8

Q ss_pred             cCCCCCCEEEEeccC-CChhhHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEccccchhh-cCCCc
Q 042119          126 NGVVQPKKVAFVGSG-PMPLTSIIMAKHHLTSTHFDNFDIDEAANDVARSIVASDAEFEGRMKFLTRDIMEVKE-QLGEY  203 (286)
Q Consensus       126 ~~~~~~~~VL~IG~G-~lp~tai~lA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~g~l~~~i~f~~~D~~~~~~-~l~~f  203 (286)
                      ....++.+|||+||| + |..++.+|+.  .+.+|+++|+|+++++.|++.+...| +  +++++++|+..... ..+.|
T Consensus        51 ~~~~~~~~vLDlG~G~~-G~~~~~la~~--~~~~v~~vD~s~~~~~~a~~~~~~~~-~--~v~~~~~d~~~~~~~~~~~f  124 (230)
T 3evz_A           51 TFLRGGEVALEIGTGHT-AMMALMAEKF--FNCKVTATEVDEEFFEYARRNIERNN-S--NVRLVKSNGGIIKGVVEGTF  124 (230)
T ss_dssp             TTCCSSCEEEEECCTTT-CHHHHHHHHH--HCCEEEEEECCHHHHHHHHHHHHHTT-C--CCEEEECSSCSSTTTCCSCE
T ss_pred             hhcCCCCEEEEcCCCHH-HHHHHHHHHh--cCCEEEEEECCHHHHHHHHHHHHHhC-C--CcEEEeCCchhhhhcccCce
Confidence            345788999999999 7 5667778873  28999999999999999999999998 4  89999999743322 22579


Q ss_pred             ceeehhhhc-cC-----------------ChhHHHHHHHHHHhhccCCcEEEEeecCcceeeecccC-CcccccCcEEEE
Q 042119          204 DCIFLAALV-GM-----------------SKEEKLTILGHIRKYMKDGGILLVRSAKGARAFLYPVV-VEHDLLDFEVLS  264 (286)
Q Consensus       204 D~V~~aalv-g~-----------------~~~~k~~vl~~l~~~l~pgg~lv~r~~~g~r~~lyp~v-~~~~l~gf~~~~  264 (286)
                      |+|+...-. ..                 ..+...++++++.+.|+|||.+++-..++....  ..+ ..-.-.||++..
T Consensus       125 D~I~~npp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~--~~~~~~l~~~g~~~~~  202 (230)
T 3evz_A          125 DVIFSAPPYYDKPLGRVLTEREAIGGGKYGEEFSVKLLEEAFDHLNPGGKVALYLPDKEKLL--NVIKERGIKLGYSVKD  202 (230)
T ss_dssp             EEEEECCCCC---------------CCSSSCHHHHHHHHHHGGGEEEEEEEEEEEESCHHHH--HHHHHHHHHTTCEEEE
T ss_pred             eEEEECCCCcCCccccccChhhhhccCccchHHHHHHHHHHHHHhCCCeEEEEEecccHhHH--HHHHHHHHHcCCceEE
Confidence            999854211 00                 012236899999999999999998654431000  000 000114887765


Q ss_pred             EecCcccceeeeEEEee
Q 042119          265 AVHPNDDVINSVVLVRN  281 (286)
Q Consensus       265 ~~~P~~~vinsvi~~r~  281 (286)
                      .....+.-+..++...|
T Consensus       203 ~~~~~g~~~~~~l~f~~  219 (230)
T 3evz_A          203 IKFKVGTRWRHSLIFFK  219 (230)
T ss_dssp             EEECCCC-CEEEEEEEC
T ss_pred             EEecCCCeEEEEEEEec
Confidence            44445555554555444

>3uwp_A Histone-lysine N-methyltransferase, H3 lysine-79; epigenetics, tubercidin, structu genomics, structural genomics consortium, SGC; HET: 5ID; 2.05A {Homo sapiens} PDB: 4eqz_A* 3sx0_A* 4er0_A* 4er7_A* 1nw3_A* 4er6_A* 4er5_A* 3qow_A* 3qox_A* 4ek9_A* 4ekg_A* 4eki_A* 4er3_A* 3sr4_A*

Probab=99.46  E-value=9e-13  Score=126.62  Aligned_cols=150  Identities=15%  Similarity=0.160  Sum_probs=102.1

Q ss_pred             hHhhhHHHHHHhcCCCCcccccccCcCcc--chhhhhHHHH-HHHHhcCCCCCCEEEEeccCCChhhHHHHHhhcCCCcE
Q 042119           82 EGLLELEFATFLTKIPQPLNNLSLFPYYG--NYVKLSKLEY-TILSENGVVQPKKVAFVGSGPMPLTSIIMAKHHLTSTH  158 (286)
Q Consensus        82 e~~lE~~~A~~l~~~~~p~~~L~~fpy~~--ny~~l~~~E~-~~l~~~~~~~~~~VL~IG~G~lp~tai~lA~~~~~g~~  158 (286)
                      ...|..-|.+.+.   +| ..|+.+.-|.  .|-.....-+ ..+....+.++.+|||||||. |..++.+|+. .+..+
T Consensus       126 ~~Il~~~Y~r~V~---~~-~~L~~Ye~Fs~~vYGEt~~~~i~~il~~l~l~~gd~VLDLGCGt-G~l~l~lA~~-~g~~k  199 (438)
T 3uwp_A          126 RHILQQVYNHSVT---DP-EKLNNYEPFSPEVYGETSFDLVAQMIDEIKMTDDDLFVDLGSGV-GQVVLQVAAA-TNCKH  199 (438)
T ss_dssp             HHHHHHHHHHHCS---CG-GGSCCCSSSCGGGGGGTHHHHHHHHHHHHCCCTTCEEEEESCTT-SHHHHHHHHH-CCCSE
T ss_pred             HHHHHHHHhhcCC---CH-HHhcCcccCCCcccCCCCHHHHHHHHHhcCCCCCCEEEEeCCCC-CHHHHHHHHH-CCCCE
Confidence            4445555555553   22 3444432221  2333332222 234445678999999999996 6667777763 33335


Q ss_pred             EEEEeCChHHHHHHHHHH-------HhcCCC-CCCeEEEEccccchhhcC--CCcceeehhhhccCChhHHHHHHHHHHh
Q 042119          159 FDNFDIDEAANDVARSIV-------ASDAEF-EGRMKFLTRDIMEVKEQL--GEYDCIFLAALVGMSKEEKLTILGHIRK  228 (286)
Q Consensus       159 V~~iDid~~ai~~Ar~~~-------~~~g~l-~~~i~f~~~D~~~~~~~l--~~fD~V~~aalvg~~~~~k~~vl~~l~~  228 (286)
                      |+|||+++++++.|++.+       +..| + ..+|+|++||+.+.+...  ..||+||..... +. +++.+.|.++.+
T Consensus       200 VvGIDiS~~~lelAr~n~e~frkr~~~~G-l~~~rVefi~GD~~~lp~~d~~~~aDVVf~Nn~~-F~-pdl~~aL~Ei~R  276 (438)
T 3uwp_A          200 HYGVEKADIPAKYAETMDREFRKWMKWYG-KKHAEYTLERGDFLSEEWRERIANTSVIFVNNFA-FG-PEVDHQLKERFA  276 (438)
T ss_dssp             EEEEECCHHHHHHHHHHHHHHHHHHHHHT-BCCCEEEEEECCTTSHHHHHHHHTCSEEEECCTT-CC-HHHHHHHHHHHT
T ss_pred             EEEEeCCHHHHHHHHHHHHHHHHHHHHhC-CCCCCeEEEECcccCCccccccCCccEEEEcccc-cC-chHHHHHHHHHH
Confidence            999999999999999864       3456 4 368999999998876532  479999965432 22 577788999999


Q ss_pred             hccCCcEEEEee
Q 042119          229 YMKDGGILLVRS  240 (286)
Q Consensus       229 ~l~pgg~lv~r~  240 (286)
                      .|||||+|++-.
T Consensus       277 vLKPGGrIVssE  288 (438)
T 3uwp_A          277 NMKEGGRIVSSK  288 (438)
T ss_dssp             TSCTTCEEEESS
T ss_pred             cCCCCcEEEEee
Confidence            999999999864

>2p35_A Trans-aconitate 2-methyltransferase; SAM dependent methyltrans agrobacterium tumefaciens, structural genomics, PSI-2; HET: SAH; 1.95A {Agrobacterium tumefaciens str}

Probab=99.46  E-value=2.4e-13  Score=119.76  Aligned_cols=109  Identities=17%  Similarity=0.255  Sum_probs=87.6

Q ss_pred             HHHHhcCCCCCCEEEEeccCCChhhHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEccccchhhcC
Q 042119          121 TILSENGVVQPKKVAFVGSGPMPLTSIIMAKHHLTSTHFDNFDIDEAANDVARSIVASDAEFEGRMKFLTRDIMEVKEQL  200 (286)
Q Consensus       121 ~~l~~~~~~~~~~VL~IG~G~lp~tai~lA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~g~l~~~i~f~~~D~~~~~~~l  200 (286)
                      .++......++.+|||||||+ |..+..+++ ..++++|+++|+|+++++.|++.    .   .+++|+++|+.+.+ ..
T Consensus        24 ~l~~~~~~~~~~~vLdiG~G~-G~~~~~l~~-~~~~~~v~~~D~s~~~~~~a~~~----~---~~~~~~~~d~~~~~-~~   93 (259)
T 2p35_A           24 DLLAQVPLERVLNGYDLGCGP-GNSTELLTD-RYGVNVITGIDSDDDMLEKAADR----L---PNTNFGKADLATWK-PA   93 (259)
T ss_dssp             HHHTTCCCSCCSSEEEETCTT-THHHHHHHH-HHCTTSEEEEESCHHHHHHHHHH----S---TTSEEEECCTTTCC-CS
T ss_pred             HHHHhcCCCCCCEEEEecCcC-CHHHHHHHH-hCCCCEEEEEECCHHHHHHHHHh----C---CCcEEEECChhhcC-cc
Confidence            345455567889999999996 556667776 35789999999999999999987    2   47999999998876 44


Q ss_pred             CCcceeehhhhccCChhHHHHHHHHHHhhccCCcEEEEee
Q 042119          201 GEYDCIFLAALVGMSKEEKLTILGHIRKYMKDGGILLVRS  240 (286)
Q Consensus       201 ~~fD~V~~aalvg~~~~~k~~vl~~l~~~l~pgg~lv~r~  240 (286)
                      +.||+|+....+.+ .++...+++++.+.|+|||.+++..
T Consensus        94 ~~fD~v~~~~~l~~-~~~~~~~l~~~~~~L~pgG~l~~~~  132 (259)
T 2p35_A           94 QKADLLYANAVFQW-VPDHLAVLSQLMDQLESGGVLAVQM  132 (259)
T ss_dssp             SCEEEEEEESCGGG-STTHHHHHHHHGGGEEEEEEEEEEE
T ss_pred             CCcCEEEEeCchhh-CCCHHHHHHHHHHhcCCCeEEEEEe
Confidence            67999997654432 2467789999999999999999975

>2i62_A Nicotinamide N-methyltransferase; structural genomics, structural genomics consortium, SGC; HET: SAH; 1.80A {Mus musculus} PDB: 2iip_A* 3rod_A*

Probab=99.46  E-value=4.9e-13  Score=118.04  Aligned_cols=111  Identities=18%  Similarity=0.239  Sum_probs=83.2

Q ss_pred             CCCCCCEEEEeccCCChhhHHHHHhhcCCCc-EEEEEeCChHHHHHHHHHHHhcCC------------------------
Q 042119          127 GVVQPKKVAFVGSGPMPLTSIIMAKHHLTST-HFDNFDIDEAANDVARSIVASDAE------------------------  181 (286)
Q Consensus       127 ~~~~~~~VL~IG~G~lp~tai~lA~~~~~g~-~V~~iDid~~ai~~Ar~~~~~~g~------------------------  181 (286)
                      +..++.+|||||||+ |..++.+++   .+. +|+|+|+|+.+++.|++.+...+.                        
T Consensus        53 ~~~~~~~vLDlGcG~-G~~~~~l~~---~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  128 (265)
T 2i62_A           53 GAVKGELLIDIGSGP-TIYQLLSAC---ESFTEIIVSDYTDQNLWELQKWLKKEPGAFDWSPVVTYVCDLEGNRMKGPEK  128 (265)
T ss_dssp             SSCCEEEEEEESCTT-CCGGGTTGG---GTEEEEEEEESCHHHHHHHHHHHTTCTTCCCCHHHHHHHHHHTTTCSCHHHH
T ss_pred             cccCCCEEEEECCCc-cHHHHHHhh---cccCeEEEecCCHHHHHHHHHHHhcCCccccchhhhhhhhcccccccchHHH
Confidence            456788999999997 555566776   444 999999999999999998765430                        


Q ss_pred             ---CCCCe-EEEEccccchhh-cC---CCcceeehhhhcc---CChhHHHHHHHHHHhhccCCcEEEEeec
Q 042119          182 ---FEGRM-KFLTRDIMEVKE-QL---GEYDCIFLAALVG---MSKEEKLTILGHIRKYMKDGGILLVRSA  241 (286)
Q Consensus       182 ---l~~~i-~f~~~D~~~~~~-~l---~~fD~V~~aalvg---~~~~~k~~vl~~l~~~l~pgg~lv~r~~  241 (286)
                         +..++ +++++|+.+... ..   +.||+|+....+.   .+.++...+++++.+.|+|||.+++...
T Consensus       129 ~~~l~~~v~~~~~~d~~~~~~~~~~~~~~fD~v~~~~~l~~~~~~~~~~~~~l~~~~~~LkpgG~li~~~~  199 (265)
T 2i62_A          129 EEKLRRAIKQVLKCDVTQSQPLGGVSLPPADCLLSTLCLDAACPDLPAYRTALRNLGSLLKPGGFLVMVDA  199 (265)
T ss_dssp             HHHHHHHEEEEEECCTTSSSTTTTCCCCCEEEEEEESCHHHHCSSHHHHHHHHHHHHTTEEEEEEEEEEEE
T ss_pred             HHHhhhhheeEEEeeeccCCCCCccccCCccEEEEhhhhhhhcCChHHHHHHHHHHHhhCCCCcEEEEEec
Confidence               00128 999999987543 22   5799998653321   1345788999999999999999999763

>2ift_A Putative methylase HI0767; NESG, Y767_haein, structural genomics, PSI-2, protein structure initiative; 2.30A {Haemophilus influenzae} SCOP: c.66.1.46

Probab=99.46  E-value=2.2e-13  Score=117.56  Aligned_cols=107  Identities=9%  Similarity=0.168  Sum_probs=83.6

Q ss_pred             CCCEEEEeccCCChhhHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCC-CCeEEEEccccchhhc--CCC-cce
Q 042119          130 QPKKVAFVGSGPMPLTSIIMAKHHLTSTHFDNFDIDEAANDVARSIVASDAEFE-GRMKFLTRDIMEVKEQ--LGE-YDC  205 (286)
Q Consensus       130 ~~~~VL~IG~G~lp~tai~lA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~g~l~-~~i~f~~~D~~~~~~~--l~~-fD~  205 (286)
                      ++.+|||+|||++.+ ++.++++  ...+|+++|+|+++++.|++.++..| +. ++++|+++|+.+....  .+. ||+
T Consensus        53 ~~~~vLDlGcGtG~~-~~~~~~~--~~~~v~gvD~s~~~l~~a~~~~~~~~-~~~~~v~~~~~d~~~~~~~~~~~~~fD~  128 (201)
T 2ift_A           53 HQSECLDGFAGSGSL-GFEALSR--QAKKVTFLELDKTVANQLKKNLQTLK-CSSEQAEVINQSSLDFLKQPQNQPHFDV  128 (201)
T ss_dssp             TTCEEEETTCTTCHH-HHHHHHT--TCSEEEEECSCHHHHHHHHHHHHHTT-CCTTTEEEECSCHHHHTTSCCSSCCEEE
T ss_pred             CCCeEEEcCCccCHH-HHHHHHc--cCCEEEEEECCHHHHHHHHHHHHHhC-CCccceEEEECCHHHHHHhhccCCCCCE
Confidence            578999999997555 4554541  33699999999999999999999988 54 6899999999876543  257 999


Q ss_pred             eehhhhccCChhHHHHHHHHH--HhhccCCcEEEEeecC
Q 042119          206 IFLAALVGMSKEEKLTILGHI--RKYMKDGGILLVRSAK  242 (286)
Q Consensus       206 V~~aalvg~~~~~k~~vl~~l--~~~l~pgg~lv~r~~~  242 (286)
                      |+.+....  .....++++.+  .+.|+|||++++....
T Consensus       129 I~~~~~~~--~~~~~~~l~~~~~~~~LkpgG~l~i~~~~  165 (201)
T 2ift_A          129 VFLDPPFH--FNLAEQAISLLCENNWLKPNALIYVETEK  165 (201)
T ss_dssp             EEECCCSS--SCHHHHHHHHHHHTTCEEEEEEEEEEEES
T ss_pred             EEECCCCC--CccHHHHHHHHHhcCccCCCcEEEEEECC
Confidence            99764322  34666788998  6679999999987643

>3g5l_A Putative S-adenosylmethionine dependent methyltransferase; structural genomics, PSI-2, protein structure initiative; 2.35A {Listeria monocytogenes str}

Probab=99.46  E-value=3e-13  Score=119.29  Aligned_cols=103  Identities=14%  Similarity=0.146  Sum_probs=83.7

Q ss_pred             CCCCCEEEEeccCCChhhHHHHHhhcCCCc-EEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEccccchhhcCCCccee
Q 042119          128 VVQPKKVAFVGSGPMPLTSIIMAKHHLTST-HFDNFDIDEAANDVARSIVASDAEFEGRMKFLTRDIMEVKEQLGEYDCI  206 (286)
Q Consensus       128 ~~~~~~VL~IG~G~lp~tai~lA~~~~~g~-~V~~iDid~~ai~~Ar~~~~~~g~l~~~i~f~~~D~~~~~~~l~~fD~V  206 (286)
                      ..++.+|||||||+ |..+..+++   .+. +|+|+|+|+++++.|++...  +   .+++|+++|+.+++...+.||+|
T Consensus        42 ~~~~~~vLD~GcG~-G~~~~~l~~---~~~~~v~~vD~s~~~~~~a~~~~~--~---~~~~~~~~d~~~~~~~~~~fD~v  112 (253)
T 3g5l_A           42 DFNQKTVLDLGCGF-GWHCIYAAE---HGAKKVLGIDLSERMLTEAKRKTT--S---PVVCYEQKAIEDIAIEPDAYNVV  112 (253)
T ss_dssp             CCTTCEEEEETCTT-CHHHHHHHH---TTCSEEEEEESCHHHHHHHHHHCC--C---TTEEEEECCGGGCCCCTTCEEEE
T ss_pred             ccCCCEEEEECCCC-CHHHHHHHH---cCCCEEEEEECCHHHHHHHHHhhc--c---CCeEEEEcchhhCCCCCCCeEEE
Confidence            35789999999997 566677777   344 99999999999999999854  2   68999999998876555689999


Q ss_pred             ehhhhccCChhHHHHHHHHHHhhccCCcEEEEee
Q 042119          207 FLAALVGMSKEEKLTILGHIRKYMKDGGILLVRS  240 (286)
Q Consensus       207 ~~aalvg~~~~~k~~vl~~l~~~l~pgg~lv~r~  240 (286)
                      +....+.. .++..++++++.+.|+|||.+++..
T Consensus       113 ~~~~~l~~-~~~~~~~l~~~~~~LkpgG~l~~~~  145 (253)
T 3g5l_A          113 LSSLALHY-IASFDDICKKVYINLKSSGSFIFSV  145 (253)
T ss_dssp             EEESCGGG-CSCHHHHHHHHHHHEEEEEEEEEEE
T ss_pred             EEchhhhh-hhhHHHHHHHHHHHcCCCcEEEEEe
Confidence            97654322 2567789999999999999999963

>2ip2_A Probable phenazine-specific methyltransferase; pyocyanin, phenazine-1-carboxy PHZM; 1.80A {Pseudomonas aeruginosa}

Probab=99.45  E-value=4.1e-13  Score=123.78  Aligned_cols=107  Identities=20%  Similarity=0.249  Sum_probs=88.3

Q ss_pred             CCCCCCEEEEeccCCChhhHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEccccchhhcCCCccee
Q 042119          127 GVVQPKKVAFVGSGPMPLTSIIMAKHHLTSTHFDNFDIDEAANDVARSIVASDAEFEGRMKFLTRDIMEVKEQLGEYDCI  206 (286)
Q Consensus       127 ~~~~~~~VL~IG~G~lp~tai~lA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~g~l~~~i~f~~~D~~~~~~~l~~fD~V  206 (286)
                      ...+ .+|+|||||+ |..+..+++ .+|+.+++++|+ +.+++.|++.+...| +.++++|+.+|..+ +.+ ++||+|
T Consensus       165 ~~~~-~~vlDvG~G~-G~~~~~l~~-~~p~~~~~~~D~-~~~~~~a~~~~~~~~-~~~~v~~~~~d~~~-~~~-~~~D~v  237 (334)
T 2ip2_A          165 DFRG-RSFVDVGGGS-GELTKAILQ-AEPSARGVMLDR-EGSLGVARDNLSSLL-AGERVSLVGGDMLQ-EVP-SNGDIY  237 (334)
T ss_dssp             CCTT-CEEEEETCTT-CHHHHHHHH-HCTTCEEEEEEC-TTCTHHHHHHTHHHH-HTTSEEEEESCTTT-CCC-SSCSEE
T ss_pred             CCCC-CEEEEeCCCc-hHHHHHHHH-HCCCCEEEEeCc-HHHHHHHHHHHhhcC-CCCcEEEecCCCCC-CCC-CCCCEE
Confidence            3445 8999999997 556667776 378999999999 999999999988888 67899999999876 332 579999


Q ss_pred             ehhhhc-cCChhHHHHHHHHHHhhccCCcEEEEee
Q 042119          207 FLAALV-GMSKEEKLTILGHIRKYMKDGGILLVRS  240 (286)
Q Consensus       207 ~~aalv-g~~~~~k~~vl~~l~~~l~pgg~lv~r~  240 (286)
                      +..... .++.+...++++++++.|+|||.+++.+
T Consensus       238 ~~~~vl~~~~~~~~~~~l~~~~~~L~pgG~l~i~e  272 (334)
T 2ip2_A          238 LLSRIIGDLDEAASLRLLGNCREAMAGDGRVVVIE  272 (334)
T ss_dssp             EEESCGGGCCHHHHHHHHHHHHHHSCTTCEEEEEE
T ss_pred             EEchhccCCCHHHHHHHHHHHHHhcCCCCEEEEEE
Confidence            976544 4666677799999999999999998875

>3ggd_A SAM-dependent methyltransferase; YP_325210.1, structural GEN joint center for structural genomics, JCSG; HET: SAH; 2.11A {Anabaena variabilis atcc 29413}

Probab=99.45  E-value=7.8e-13  Score=116.10  Aligned_cols=104  Identities=9%  Similarity=0.080  Sum_probs=83.0

Q ss_pred             CCCCCEEEEeccCCChhhHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEccccchhhcC-----CC
Q 042119          128 VVQPKKVAFVGSGPMPLTSIIMAKHHLTSTHFDNFDIDEAANDVARSIVASDAEFEGRMKFLTRDIMEVKEQL-----GE  202 (286)
Q Consensus       128 ~~~~~~VL~IG~G~lp~tai~lA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~g~l~~~i~f~~~D~~~~~~~l-----~~  202 (286)
                      ..++.+|||||||+ |..+..+|+   .+.+|+|+|+|+.+++.|++..   +  ..+++|+++|+.+.....     ..
T Consensus        54 ~~~~~~vLD~GcG~-G~~~~~la~---~~~~v~gvD~s~~~~~~a~~~~---~--~~~~~~~~~d~~~~~~~~~~~~~~~  124 (245)
T 3ggd_A           54 FNPELPLIDFACGN-GTQTKFLSQ---FFPRVIGLDVSKSALEIAAKEN---T--AANISYRLLDGLVPEQAAQIHSEIG  124 (245)
T ss_dssp             SCTTSCEEEETCTT-SHHHHHHHH---HSSCEEEEESCHHHHHHHHHHS---C--CTTEEEEECCTTCHHHHHHHHHHHC
T ss_pred             cCCCCeEEEEcCCC-CHHHHHHHH---hCCCEEEEECCHHHHHHHHHhC---c--ccCceEEECcccccccccccccccC
Confidence            46788999999996 667778887   3449999999999999999975   3  248999999998755422     24


Q ss_pred             cceeehhhhc-cCChhHHHHHHHHHHhhccCCcEEEEee
Q 042119          203 YDCIFLAALV-GMSKEEKLTILGHIRKYMKDGGILLVRS  240 (286)
Q Consensus       203 fD~V~~aalv-g~~~~~k~~vl~~l~~~l~pgg~lv~r~  240 (286)
                      ||+|+..... ..+.++..++++++.+.|||||++++.+
T Consensus       125 ~d~v~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~  163 (245)
T 3ggd_A          125 DANIYMRTGFHHIPVEKRELLGQSLRILLGKQGAMYLIE  163 (245)
T ss_dssp             SCEEEEESSSTTSCGGGHHHHHHHHHHHHTTTCEEEEEE
T ss_pred             ccEEEEcchhhcCCHHHHHHHHHHHHHHcCCCCEEEEEe
Confidence            8999876554 3455678899999999999999987764

>3i9f_A Putative type 11 methyltransferase; structural genomics, PSI-2, protein structure initiative; 2.50A {Sulfolobus solfataricus}

Probab=99.45  E-value=7.7e-13  Score=109.65  Aligned_cols=137  Identities=14%  Similarity=0.164  Sum_probs=95.7

Q ss_pred             CCCCCEEEEeccCCChhhHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEccccchhhcCCCcceee
Q 042119          128 VVQPKKVAFVGSGPMPLTSIIMAKHHLTSTHFDNFDIDEAANDVARSIVASDAEFEGRMKFLTRDIMEVKEQLGEYDCIF  207 (286)
Q Consensus       128 ~~~~~~VL~IG~G~lp~tai~lA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~g~l~~~i~f~~~D~~~~~~~l~~fD~V~  207 (286)
                      ..++.+|||||||+ |..+..+++   .+.+|+++|+|+++++.|++.    .   .++++.++|   .+...+.||+|+
T Consensus        15 ~~~~~~vLDiG~G~-G~~~~~l~~---~~~~v~~vD~s~~~~~~a~~~----~---~~v~~~~~d---~~~~~~~~D~v~   80 (170)
T 3i9f_A           15 EGKKGVIVDYGCGN-GFYCKYLLE---FATKLYCIDINVIALKEVKEK----F---DSVITLSDP---KEIPDNSVDFIL   80 (170)
T ss_dssp             SSCCEEEEEETCTT-CTTHHHHHT---TEEEEEEECSCHHHHHHHHHH----C---TTSEEESSG---GGSCTTCEEEEE
T ss_pred             cCCCCeEEEECCCC-CHHHHHHHh---hcCeEEEEeCCHHHHHHHHHh----C---CCcEEEeCC---CCCCCCceEEEE
Confidence            46788999999997 566777877   335999999999999999998    2   579999999   344446799999


Q ss_pred             hhhhccCChhHHHHHHHHHHhhccCCcEEEEeecCcceeeecc----cCCcc----cccCcEEEEEecCcccceeeeEEE
Q 042119          208 LAALVGMSKEEKLTILGHIRKYMKDGGILLVRSAKGARAFLYP----VVVEH----DLLDFEVLSAVHPNDDVINSVVLV  279 (286)
Q Consensus       208 ~aalvg~~~~~k~~vl~~l~~~l~pgg~lv~r~~~g~r~~lyp----~v~~~----~l~gf~~~~~~~P~~~vinsvi~~  279 (286)
                      ...... ..++...+++++.+.|+|||.+++.+...-.....|    .....    -+.||++........  .+-.+++
T Consensus        81 ~~~~l~-~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Gf~~~~~~~~~~--~~~~l~~  157 (170)
T 3i9f_A           81 FANSFH-DMDDKQHVISEVKRILKDDGRVIIIDWRKENTGIGPPLSIRMDEKDYMGWFSNFVVEKRFNPTP--YHFGLVL  157 (170)
T ss_dssp             EESCST-TCSCHHHHHHHHHHHEEEEEEEEEEEECSSCCSSSSCGGGCCCHHHHHHHTTTEEEEEEECSST--TEEEEEE
T ss_pred             Eccchh-cccCHHHHHHHHHHhcCCCCEEEEEEcCccccccCchHhhhcCHHHHHHHHhCcEEEEccCCCC--ceEEEEE
Confidence            765443 225677899999999999999999763211111111    11222    124999887766553  2235555


Q ss_pred             ee
Q 042119          280 RN  281 (286)
Q Consensus       280 r~  281 (286)
                      +|
T Consensus       158 ~~  159 (170)
T 3i9f_A          158 KR  159 (170)
T ss_dssp             EE
T ss_pred             ec
Confidence            55

>3gu3_A Methyltransferase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; HET: SAH; 2.30A {Bacillus cereus} SCOP: c.66.1.49 PDB: 2gh1_A

Probab=99.45  E-value=2.7e-13  Score=122.59  Aligned_cols=108  Identities=19%  Similarity=0.272  Sum_probs=89.1

Q ss_pred             CCCCCEEEEeccCCChhhHHHHHhhcCC-CcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEccccchhhcCCCccee
Q 042119          128 VVQPKKVAFVGSGPMPLTSIIMAKHHLT-STHFDNFDIDEAANDVARSIVASDAEFEGRMKFLTRDIMEVKEQLGEYDCI  206 (286)
Q Consensus       128 ~~~~~~VL~IG~G~lp~tai~lA~~~~~-g~~V~~iDid~~ai~~Ar~~~~~~g~l~~~i~f~~~D~~~~~~~l~~fD~V  206 (286)
                      ..++.+|||||||+ |..++.+++ .++ +++|+|+|+|+.+++.|++.+...+   .+++|+++|+.+.+.+ +.||+|
T Consensus        20 ~~~~~~vLDiGcG~-G~~~~~l~~-~~~~~~~v~gvD~s~~~~~~a~~~~~~~~---~~v~~~~~d~~~~~~~-~~fD~v   93 (284)
T 3gu3_A           20 ITKPVHIVDYGCGY-GYLGLVLMP-LLPEGSKYTGIDSGETLLAEARELFRLLP---YDSEFLEGDATEIELN-DKYDIA   93 (284)
T ss_dssp             CCSCCEEEEETCTT-THHHHHHTT-TSCTTCEEEEEESCHHHHHHHHHHHHSSS---SEEEEEESCTTTCCCS-SCEEEE
T ss_pred             cCCCCeEEEecCCC-CHHHHHHHH-hCCCCCEEEEEECCHHHHHHHHHHHHhcC---CceEEEEcchhhcCcC-CCeeEE
Confidence            46889999999996 667788887 355 6999999999999999999998877   3899999999886653 579999


Q ss_pred             ehhhhccCChhHHHHHHHHHHhhccCCcEEEEeecC
Q 042119          207 FLAALVGMSKEEKLTILGHIRKYMKDGGILLVRSAK  242 (286)
Q Consensus       207 ~~aalvg~~~~~k~~vl~~l~~~l~pgg~lv~r~~~  242 (286)
                      +.....+. .++..++++++.+.|+|||.+++.+..
T Consensus        94 ~~~~~l~~-~~~~~~~l~~~~~~LkpgG~l~~~~~~  128 (284)
T 3gu3_A           94 ICHAFLLH-MTTPETMLQKMIHSVKKGGKIICFEPH  128 (284)
T ss_dssp             EEESCGGG-CSSHHHHHHHHHHTEEEEEEEEEEECC
T ss_pred             EECChhhc-CCCHHHHHHHHHHHcCCCCEEEEEecc
Confidence            97654422 245678999999999999999987654

>2yqz_A Hypothetical protein TTHA0223; RNA methyltransferase, SAM, structural genomics, NPPSFA; HET: SAM; 1.80A {Thermus thermophilus} PDB: 2yr0_A

Probab=99.45  E-value=2.9e-13  Score=119.40  Aligned_cols=105  Identities=14%  Similarity=0.178  Sum_probs=85.0

Q ss_pred             CCCCCCEEEEeccCCChhhHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEccccchhhcCCCccee
Q 042119          127 GVVQPKKVAFVGSGPMPLTSIIMAKHHLTSTHFDNFDIDEAANDVARSIVASDAEFEGRMKFLTRDIMEVKEQLGEYDCI  206 (286)
Q Consensus       127 ~~~~~~~VL~IG~G~lp~tai~lA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~g~l~~~i~f~~~D~~~~~~~l~~fD~V  206 (286)
                      ...++.+|||||||+ |..+..+++   .+.+|+|+|+|+++++.|++.+ ..  ...+++|+++|+.+++...+.||+|
T Consensus        36 ~~~~~~~vLDiG~G~-G~~~~~l~~---~~~~v~~vD~s~~~~~~a~~~~-~~--~~~~~~~~~~d~~~~~~~~~~fD~v  108 (263)
T 2yqz_A           36 PKGEEPVFLELGVGT-GRIALPLIA---RGYRYIALDADAAMLEVFRQKI-AG--VDRKVQVVQADARAIPLPDESVHGV  108 (263)
T ss_dssp             CSSSCCEEEEETCTT-STTHHHHHT---TTCEEEEEESCHHHHHHHHHHT-TT--SCTTEEEEESCTTSCCSCTTCEEEE
T ss_pred             CCCCCCEEEEeCCcC-CHHHHHHHH---CCCEEEEEECCHHHHHHHHHHh-hc--cCCceEEEEcccccCCCCCCCeeEE
Confidence            346789999999997 556677887   4789999999999999999987 22  2378999999998776555679999


Q ss_pred             ehhhhccCChhHHHHHHHHHHhhccCCcEEEEe
Q 042119          207 FLAALVGMSKEEKLTILGHIRKYMKDGGILLVR  239 (286)
Q Consensus       207 ~~aalvg~~~~~k~~vl~~l~~~l~pgg~lv~r  239 (286)
                      +.....++ .++..++++++.+.|+|||.+++.
T Consensus       109 ~~~~~l~~-~~~~~~~l~~~~~~L~pgG~l~~~  140 (263)
T 2yqz_A          109 IVVHLWHL-VPDWPKVLAEAIRVLKPGGALLEG  140 (263)
T ss_dssp             EEESCGGG-CTTHHHHHHHHHHHEEEEEEEEEE
T ss_pred             EECCchhh-cCCHHHHHHHHHHHCCCCcEEEEE
Confidence            97654432 236678999999999999999886

>3gnl_A Uncharacterized protein, DUF633, LMOF2365_1472; structural genomics, PSI-2, protein structure initiative; 1.50A {Listeria monocytogenes str}

Probab=99.45  E-value=5.4e-13  Score=119.90  Aligned_cols=109  Identities=17%  Similarity=0.153  Sum_probs=90.3

Q ss_pred             CCCCCEEEEeccCCChhhHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEccccchhhcCCCcceee
Q 042119          128 VVQPKKVAFVGSGPMPLTSIIMAKHHLTSTHFDNFDIDEAANDVARSIVASDAEFEGRMKFLTRDIMEVKEQLGEYDCIF  207 (286)
Q Consensus       128 ~~~~~~VL~IG~G~lp~tai~lA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~g~l~~~i~f~~~D~~~~~~~l~~fD~V~  207 (286)
                      +.++.+|||||||+ |.-++.+|+ ..+..+|+++|+|+.+++.|+++++..| +.++|++.++|+.+...+...||+|+
T Consensus        19 v~~g~~VlDIGtGs-G~l~i~la~-~~~~~~V~avDi~~~al~~A~~N~~~~g-l~~~I~v~~gD~l~~~~~~~~~D~Iv   95 (244)
T 3gnl_A           19 ITKNERIADIGSDH-AYLPCFAVK-NQTASFAIAGEVVDGPFQSAQKQVRSSG-LTEQIDVRKGNGLAVIEKKDAIDTIV   95 (244)
T ss_dssp             CCSSEEEEEETCST-THHHHHHHH-TTSEEEEEEEESSHHHHHHHHHHHHHTT-CTTTEEEEECSGGGGCCGGGCCCEEE
T ss_pred             CCCCCEEEEECCcc-HHHHHHHHH-hCCCCEEEEEECCHHHHHHHHHHHHHcC-CCceEEEEecchhhccCccccccEEE
Confidence            46779999999997 566788888 3567799999999999999999999999 78899999999987654323599998


Q ss_pred             hhhhccCChhHHHHHHHHHHhhccCCcEEEEeecC
Q 042119          208 LAALVGMSKEEKLTILGHIRKYMKDGGILLVRSAK  242 (286)
Q Consensus       208 ~aalvg~~~~~k~~vl~~l~~~l~pgg~lv~r~~~  242 (286)
                      ++.   |-.+--.++++...+++++++.+|+..-.
T Consensus        96 iag---mGg~lI~~IL~~~~~~L~~~~~lIlq~~~  127 (244)
T 3gnl_A           96 IAG---MGGTLIRTILEEGAAKLAGVTKLILQPNI  127 (244)
T ss_dssp             EEE---ECHHHHHHHHHHTGGGGTTCCEEEEEESS
T ss_pred             EeC---CchHHHHHHHHHHHHHhCCCCEEEEEcCC
Confidence            753   33455678999999999999999998643

>1tw3_A COMT, carminomycin 4-O-methyltransferase; anthracycline, methylate, tailoring enzyme, polyketide, S-adenosyl-L-homocystein; HET: SAH ERT; 2.35A {Streptomyces peucetius} SCOP: a.4.5.29 c.66.1.12 PDB: 1tw2_A*

Probab=99.44  E-value=9.4e-13  Score=122.57  Aligned_cols=153  Identities=14%  Similarity=0.168  Sum_probs=107.5

Q ss_pred             cCCCCCCEEEEeccCCChhhHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEccccchhhcCCCcce
Q 042119          126 NGVVQPKKVAFVGSGPMPLTSIIMAKHHLTSTHFDNFDIDEAANDVARSIVASDAEFEGRMKFLTRDIMEVKEQLGEYDC  205 (286)
Q Consensus       126 ~~~~~~~~VL~IG~G~lp~tai~lA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~g~l~~~i~f~~~D~~~~~~~l~~fD~  205 (286)
                      ....++.+|||||||+ |..+..+++ ..++.+++++|+ +++++.|++.+...| +.++++|+++|+.+. .+ .+||+
T Consensus       179 ~~~~~~~~vLDvG~G~-G~~~~~l~~-~~~~~~~~~~D~-~~~~~~a~~~~~~~~-~~~~v~~~~~d~~~~-~~-~~~D~  252 (360)
T 1tw3_A          179 YDWTNVRHVLDVGGGK-GGFAAAIAR-RAPHVSATVLEM-AGTVDTARSYLKDEG-LSDRVDVVEGDFFEP-LP-RKADA  252 (360)
T ss_dssp             SCCTTCSEEEEETCTT-SHHHHHHHH-HCTTCEEEEEEC-TTHHHHHHHHHHHTT-CTTTEEEEECCTTSC-CS-SCEEE
T ss_pred             CCCccCcEEEEeCCcC-cHHHHHHHH-hCCCCEEEEecC-HHHHHHHHHHHHhcC-CCCceEEEeCCCCCC-CC-CCccE
Confidence            3456789999999997 555677777 468899999999 999999999999988 677999999998651 11 25999


Q ss_pred             eehhhhc-cCChhHHHHHHHHHHhhccCCcEEEEeecC--c--c----eee---------ecccCCcccc------cCcE
Q 042119          206 IFLAALV-GMSKEEKLTILGHIRKYMKDGGILLVRSAK--G--A----RAF---------LYPVVVEHDL------LDFE  261 (286)
Q Consensus       206 V~~aalv-g~~~~~k~~vl~~l~~~l~pgg~lv~r~~~--g--~----r~~---------lyp~v~~~~l------~gf~  261 (286)
                      |+....+ .++.++..++++++.+.|+|||.+++.+..  .  .    ..+         .......+++      .||+
T Consensus       253 v~~~~vl~~~~~~~~~~~l~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~ll~~aGf~  332 (360)
T 1tw3_A          253 IILSFVLLNWPDHDAVRILTRCAEALEPGGRILIHERDDLHENSFNEQFTELDLRMLVFLGGALRTREKWDGLAASAGLV  332 (360)
T ss_dssp             EEEESCGGGSCHHHHHHHHHHHHHTEEEEEEEEEEECCBCGGGCCSHHHHHHHHHHHHHHSCCCCBHHHHHHHHHHTTEE
T ss_pred             EEEcccccCCCHHHHHHHHHHHHHhcCCCcEEEEEEEeccCCCCCcchhhhccHHHhhhcCCcCCCHHHHHHHHHHCCCe
Confidence            9876544 455555578999999999999998886532  1  0    000         0011122221      5999


Q ss_pred             EEEEecCcc---cceeeeEEEeecCC
Q 042119          262 VLSAVHPND---DVINSVVLVRNSQG  284 (286)
Q Consensus       262 ~~~~~~P~~---~vinsvi~~r~~~~  284 (286)
                      +..+....+   ....++|.+||+.|
T Consensus       333 ~~~~~~~~~~~~~~~~~~i~~~~~~~  358 (360)
T 1tw3_A          333 VEEVRQLPSPTIPYDLSLLVLAPAAT  358 (360)
T ss_dssp             EEEEEEEECSSSSCEEEEEEEEEC--
T ss_pred             EEEEEeCCCCcccCccEEEEEEeCCC
Confidence            876554322   23468999999754

>4df3_A Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase; NADP rossmann superfamily, S-adenosyl-L-M (SAM) binding, nucleolus; HET: SAM; 1.73A {Aeropyrum pernix}

Probab=99.44  E-value=3.4e-13  Score=120.47  Aligned_cols=118  Identities=14%  Similarity=0.164  Sum_probs=92.2

Q ss_pred             hhhHHHHHHHHhcCCCCCCEEEEeccCCChhhHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEccc
Q 042119          114 KLSKLEYTILSENGVVQPKKVAFVGSGPMPLTSIIMAKHHLTSTHFDNFDIDEAANDVARSIVASDAEFEGRMKFLTRDI  193 (286)
Q Consensus       114 ~l~~~E~~~l~~~~~~~~~~VL~IG~G~lp~tai~lA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~g~l~~~i~f~~~D~  193 (286)
                      +|+..-...+....+++|++||++|||+ |.++..+|+...++++|+++|+++++++.+++.+++.+    ++..+.+|+
T Consensus        61 klaa~i~~gl~~l~ikpG~~VldlG~G~-G~~~~~la~~VG~~G~V~avD~s~~~~~~l~~~a~~~~----ni~~V~~d~  135 (233)
T 4df3_A           61 KLAAALLKGLIELPVKEGDRILYLGIAS-GTTASHMSDIIGPRGRIYGVEFAPRVMRDLLTVVRDRR----NIFPILGDA  135 (233)
T ss_dssp             HHHHHHHTTCSCCCCCTTCEEEEETCTT-SHHHHHHHHHHCTTCEEEEEECCHHHHHHHHHHSTTCT----TEEEEESCT
T ss_pred             HHHHHHHhchhhcCCCCCCEEEEecCcC-CHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhHhhc----CeeEEEEec
Confidence            4444333444455679999999999996 88888999866789999999999999999999876554    689999998


Q ss_pred             cchhh---cCCCcceeehhhhccCChhHHHHHHHHHHhhccCCcEEEEe
Q 042119          194 MEVKE---QLGEYDCIFLAALVGMSKEEKLTILGHIRKYMKDGGILLVR  239 (286)
Q Consensus       194 ~~~~~---~l~~fD~V~~aalvg~~~~~k~~vl~~l~~~l~pgg~lv~r  239 (286)
                      .+...   ....+|+||.+..   ..+++..++.++.+.|||||.+++.
T Consensus       136 ~~p~~~~~~~~~vDvVf~d~~---~~~~~~~~l~~~~r~LKpGG~lvI~  181 (233)
T 4df3_A          136 RFPEKYRHLVEGVDGLYADVA---QPEQAAIVVRNARFFLRDGGYMLMA  181 (233)
T ss_dssp             TCGGGGTTTCCCEEEEEECCC---CTTHHHHHHHHHHHHEEEEEEEEEE
T ss_pred             cCccccccccceEEEEEEecc---CChhHHHHHHHHHHhccCCCEEEEE
Confidence            76432   2346999985432   2357788999999999999998875

>4fsd_A Arsenic methyltransferase; rossmann fold; 1.75A {Cyanidioschyzon SP} PDB: 4fr0_A* 4fs8_A 3p7e_A 3qnh_A 3qhu_A

Probab=99.44  E-value=2.9e-13  Score=128.01  Aligned_cols=111  Identities=18%  Similarity=0.239  Sum_probs=89.1

Q ss_pred             CCCCCEEEEeccCCChhhHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhc-----C-CCCCCeEEEEccccch-----
Q 042119          128 VVQPKKVAFVGSGPMPLTSIIMAKHHLTSTHFDNFDIDEAANDVARSIVASD-----A-EFEGRMKFLTRDIMEV-----  196 (286)
Q Consensus       128 ~~~~~~VL~IG~G~lp~tai~lA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~-----g-~l~~~i~f~~~D~~~~-----  196 (286)
                      ..++.+|||||||+ |..++.+++...++++|+|+|+|+++++.|++.++..     | ....+++|+++|+.++     
T Consensus        81 ~~~~~~VLDlGcG~-G~~~~~la~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~g~~~~~~v~~~~~d~~~l~~~~~  159 (383)
T 4fsd_A           81 SLEGATVLDLGCGT-GRDVYLASKLVGEHGKVIGVDMLDNQLEVARKYVEYHAEKFFGSPSRSNVRFLKGFIENLATAEP  159 (383)
T ss_dssp             GGTTCEEEEESCTT-SHHHHHHHHHHTTTCEEEEEECCHHHHHHHHHTHHHHHHHHHSSTTCCCEEEEESCTTCGGGCBS
T ss_pred             CCCCCEEEEecCcc-CHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHhhhhcccccCCCceEEEEccHHHhhhccc
Confidence            35789999999996 6677778874347899999999999999999998765     3 1226899999999876     


Q ss_pred             -hhcCCCcceeehhhhccCChhHHHHHHHHHHhhccCCcEEEEee
Q 042119          197 -KEQLGEYDCIFLAALVGMSKEEKLTILGHIRKYMKDGGILLVRS  240 (286)
Q Consensus       197 -~~~l~~fD~V~~aalvg~~~~~k~~vl~~l~~~l~pgg~lv~r~  240 (286)
                       +...+.||+|+....+.+ .+++..+++++.+.|||||.+++.+
T Consensus       160 ~~~~~~~fD~V~~~~~l~~-~~d~~~~l~~~~r~LkpgG~l~i~~  203 (383)
T 4fsd_A          160 EGVPDSSVDIVISNCVCNL-STNKLALFKEIHRVLRDGGELYFSD  203 (383)
T ss_dssp             CCCCTTCEEEEEEESCGGG-CSCHHHHHHHHHHHEEEEEEEEEEE
T ss_pred             CCCCCCCEEEEEEccchhc-CCCHHHHHHHHHHHcCCCCEEEEEE
Confidence             444457999996654432 2467899999999999999999975

>3thr_A Glycine N-methyltransferase; GNMT, folate, methyltransferase binding, liver cytosol, transferase-transferase inhibitor C; HET: C2F TAM; 2.00A {Rattus norvegicus} SCOP: c.66.1.5 PDB: 3ths_A* 1xva_A* 1d2c_A 1kia_A* 1nbh_A* 1bhj_A* 2idj_A 2idk_A* 1d2g_A 1d2h_A* 1nbi_A* 1r8x_A 1r8y_A 1r74_A* 2azt_A*

Probab=99.44  E-value=8e-13  Score=119.04  Aligned_cols=108  Identities=13%  Similarity=0.178  Sum_probs=85.2

Q ss_pred             CCCCEEEEeccCCChhhHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCC--CCCCeEEEEccccchh---hcCCCc
Q 042119          129 VQPKKVAFVGSGPMPLTSIIMAKHHLTSTHFDNFDIDEAANDVARSIVASDAE--FEGRMKFLTRDIMEVK---EQLGEY  203 (286)
Q Consensus       129 ~~~~~VL~IG~G~lp~tai~lA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~g~--l~~~i~f~~~D~~~~~---~~l~~f  203 (286)
                      .++.+|||||||+ |..++.+++   .|.+|+|+|+|+++++.|++.....+.  ...++.+..+|+.+++   ...+.|
T Consensus        56 ~~~~~vLDiGcG~-G~~~~~l~~---~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~f  131 (293)
T 3thr_A           56 HGCHRVLDVACGT-GVDSIMLVE---EGFSVTSVDASDKMLKYALKERWNRRKEPAFDKWVIEEANWLTLDKDVPAGDGF  131 (293)
T ss_dssp             TTCCEEEETTCTT-SHHHHHHHH---TTCEEEEEESCHHHHHHHHHHHHHTTTSHHHHTCEEEECCGGGHHHHSCCTTCE
T ss_pred             cCCCEEEEecCCC-CHHHHHHHH---CCCeEEEEECCHHHHHHHHHhhhhcccccccceeeEeecChhhCccccccCCCe
Confidence            4678999999996 667788888   478999999999999999998755431  0147899999998877   344689


Q ss_pred             ceeehh--hhccCCh-----hHHHHHHHHHHhhccCCcEEEEee
Q 042119          204 DCIFLA--ALVGMSK-----EEKLTILGHIRKYMKDGGILLVRS  240 (286)
Q Consensus       204 D~V~~a--alvg~~~-----~~k~~vl~~l~~~l~pgg~lv~r~  240 (286)
                      |+|+..  .+..+..     ++..++++++.+.|||||.+++..
T Consensus       132 D~V~~~g~~l~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~  175 (293)
T 3thr_A          132 DAVICLGNSFAHLPDSKGDQSEHRLALKNIASMVRPGGLLVIDH  175 (293)
T ss_dssp             EEEEECTTCGGGSCCSSSSSHHHHHHHHHHHHTEEEEEEEEEEE
T ss_pred             EEEEEcChHHhhcCccccCHHHHHHHHHHHHHHcCCCeEEEEEe
Confidence            999864  2323322     458899999999999999999864

>3gjy_A Spermidine synthase; APC62791, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.47A {Corynebacterium glutamicum atcc 13032}

Probab=99.44  E-value=1.2e-13  Score=128.47  Aligned_cols=145  Identities=14%  Similarity=0.218  Sum_probs=100.6

Q ss_pred             CCEEEEeccCCChhhHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEccccchhhcC--CCcceeeh
Q 042119          131 PKKVAFVGSGPMPLTSIIMAKHHLTSTHFDNFDIDEAANDVARSIVASDAEFEGRMKFLTRDIMEVKEQL--GEYDCIFL  208 (286)
Q Consensus       131 ~~~VL~IG~G~lp~tai~lA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~g~l~~~i~f~~~D~~~~~~~l--~~fD~V~~  208 (286)
                      +.+||+||||. |..+..+++ .+++.+|++||+|+++++.||+.+...+  ..+++++++|+.+.....  +.||+|+.
T Consensus        90 ~~rVLdIG~G~-G~la~~la~-~~p~~~v~~VEidp~vi~~Ar~~~~~~~--~~rv~v~~~Da~~~l~~~~~~~fDvIi~  165 (317)
T 3gjy_A           90 KLRITHLGGGA-CTMARYFAD-VYPQSRNTVVELDAELARLSREWFDIPR--APRVKIRVDDARMVAESFTPASRDVIIR  165 (317)
T ss_dssp             GCEEEEESCGG-GHHHHHHHH-HSTTCEEEEEESCHHHHHHHHHHSCCCC--TTTEEEEESCHHHHHHTCCTTCEEEEEE
T ss_pred             CCEEEEEECCc-CHHHHHHHH-HCCCcEEEEEECCHHHHHHHHHhccccC--CCceEEEECcHHHHHhhccCCCCCEEEE
Confidence            34999999995 677777877 4689999999999999999999865332  378999999998876543  47999998


Q ss_pred             hhhccCChhH---HHHHHHHHHhhccCCcEEEEeecCcceeeecccCC--cccc-cCcEEEEEec-C----cccceeeeE
Q 042119          209 AALVGMSKEE---KLTILGHIRKYMKDGGILLVRSAKGARAFLYPVVV--EHDL-LDFEVLSAVH-P----NDDVINSVV  277 (286)
Q Consensus       209 aalvg~~~~~---k~~vl~~l~~~l~pgg~lv~r~~~g~r~~lyp~v~--~~~l-~gf~~~~~~~-P----~~~vinsvi  277 (286)
                      +..-+.....   ..++++.+++.|+|||++++....+..   ++.+.  ...+ .-|..+..++ |    ..+--|.|+
T Consensus       166 D~~~~~~~~~~L~t~efl~~~~r~LkpgGvlv~~~~~~~~---~~~~~~~~~tL~~vF~~v~~~~~~~~~~g~~~gN~Vl  242 (317)
T 3gjy_A          166 DVFAGAITPQNFTTVEFFEHCHRGLAPGGLYVANCGDHSD---LRGAKSELAGMMEVFEHVAVIADPPMLKGRRYGNIIL  242 (317)
T ss_dssp             CCSTTSCCCGGGSBHHHHHHHHHHEEEEEEEEEEEEECTT---CHHHHHHHHHHHHHCSEEEEEECHHHHTTSSCEEEEE
T ss_pred             CCCCccccchhhhHHHHHHHHHHhcCCCcEEEEEecCCcc---hHHHHHHHHHHHHHCCceEEEEecCCCCCCcCceEEE
Confidence            7543221111   257999999999999999988643211   00000  0111 2354443333 2    225669999


Q ss_pred             EEeec
Q 042119          278 LVRNS  282 (286)
Q Consensus       278 ~~r~~  282 (286)
                      +|.+.
T Consensus       243 ~As~~  247 (317)
T 3gjy_A          243 MGSDT  247 (317)
T ss_dssp             EEESS
T ss_pred             EEECC
Confidence            99874

>4dzr_A Protein-(glutamine-N5) methyltransferase, release specific; structural genomics, PSI-biology; 2.55A {Alicyclobacillus acidocaldarius subsp}

Probab=99.44  E-value=5.4e-14  Score=119.80  Aligned_cols=149  Identities=12%  Similarity=0.065  Sum_probs=79.9

Q ss_pred             CCCCEEEEeccCCChhhHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEccccchhhc----CCCcc
Q 042119          129 VQPKKVAFVGSGPMPLTSIIMAKHHLTSTHFDNFDIDEAANDVARSIVASDAEFEGRMKFLTRDIMEVKEQ----LGEYD  204 (286)
Q Consensus       129 ~~~~~VL~IG~G~lp~tai~lA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~g~l~~~i~f~~~D~~~~~~~----l~~fD  204 (286)
                      .++.+|||+|||+ |..++.+++ ..++++|+++|+|+++++.|++.+...| .  +++|+++|+.+...+    .+.||
T Consensus        29 ~~~~~vLDiG~G~-G~~~~~l~~-~~~~~~v~~vD~~~~~~~~a~~~~~~~~-~--~~~~~~~d~~~~~~~~~~~~~~fD  103 (215)
T 4dzr_A           29 PSGTRVIDVGTGS-GCIAVSIAL-ACPGVSVTAVDLSMDALAVARRNAERFG-A--VVDWAAADGIEWLIERAERGRPWH  103 (215)
T ss_dssp             CTTEEEEEEESSB-CHHHHHHHH-HCTTEEEEEEECC----------------------CCHHHHHHHHHHHHHTTCCBS
T ss_pred             CCCCEEEEecCCH-hHHHHHHHH-hCCCCeEEEEECCHHHHHHHHHHHHHhC-C--ceEEEEcchHhhhhhhhhccCccc
Confidence            6789999999996 666677777 4678999999999999999999999888 4  899999999873332    26899


Q ss_pred             eeehhhh------c-cCChhH------------------HHHHHHHHHhhccCCcE-EEEeecCcceeeecccCCccccc
Q 042119          205 CIFLAAL------V-GMSKEE------------------KLTILGHIRKYMKDGGI-LLVRSAKGARAFLYPVVVEHDLL  258 (286)
Q Consensus       205 ~V~~aal------v-g~~~~~------------------k~~vl~~l~~~l~pgg~-lv~r~~~g~r~~lyp~v~~~~l~  258 (286)
                      +|+...-      . .++.+.                  ..++++++.+.|+|||+ +++.....-..-+-.....- -.
T Consensus       104 ~i~~npp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~l~~~-~~  182 (215)
T 4dzr_A          104 AIVSNPPYIPTGEIDQLEPSVRDYEPRLALDGGEDGLQFYRRMAALPPYVLARGRAGVFLEVGHNQADEVARLFAPW-RE  182 (215)
T ss_dssp             EEEECCCCCC------------------------CTTHHHHHHHTCCGGGBCSSSEEEEEECTTSCHHHHHHHTGGG-GG
T ss_pred             EEEECCCCCCCccccccChhhhccCccccccCCCcHHHHHHHHHHHHHHHhcCCCeEEEEEECCccHHHHHHHHHHh-hc
Confidence            9987310      0 111111                  16799999999999999 55543321101000000100 14


Q ss_pred             CcEEEEEecCcccceeeeEEEeecCC
Q 042119          259 DFEVLSAVHPNDDVINSVVLVRNSQG  284 (286)
Q Consensus       259 gf~~~~~~~P~~~vinsvi~~r~~~~  284 (286)
                      ||..+........- ..+++++|+.+
T Consensus       183 gf~~~~~~~~~~~~-~r~~~~~~~~~  207 (215)
T 4dzr_A          183 RGFRVRKVKDLRGI-DRVIAVTREPG  207 (215)
T ss_dssp             GTEECCEEECTTSC-EEEEEEEECC-
T ss_pred             CCceEEEEEecCCC-EEEEEEEEcCC
Confidence            67665444433222 56788887543

>2fyt_A Protein arginine N-methyltransferase 3; structural genomics, structural genomics consortium, SGC; HET: SAH; 2.00A {Homo sapiens} SCOP: c.66.1.6 PDB: 3smq_A* 1f3l_A*

Probab=99.43  E-value=7.3e-13  Score=123.76  Aligned_cols=105  Identities=22%  Similarity=0.250  Sum_probs=84.9

Q ss_pred             CCCCCEEEEeccCCChhhHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEccccchhhcCCCcceee
Q 042119          128 VVQPKKVAFVGSGPMPLTSIIMAKHHLTSTHFDNFDIDEAANDVARSIVASDAEFEGRMKFLTRDIMEVKEQLGEYDCIF  207 (286)
Q Consensus       128 ~~~~~~VL~IG~G~lp~tai~lA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~g~l~~~i~f~~~D~~~~~~~l~~fD~V~  207 (286)
                      ..++++|||||||+ |..++.+|++  ...+|+|+|+|+ +++.|++.++..| +.++++++++|+.+++.+.+.||+|+
T Consensus        62 ~~~~~~VLDiGcGt-G~ls~~la~~--g~~~v~gvD~s~-~~~~a~~~~~~~~-~~~~i~~~~~d~~~~~~~~~~~D~Iv  136 (340)
T 2fyt_A           62 IFKDKVVLDVGCGT-GILSMFAAKA--GAKKVLGVDQSE-ILYQAMDIIRLNK-LEDTITLIKGKIEEVHLPVEKVDVII  136 (340)
T ss_dssp             GTTTCEEEEETCTT-SHHHHHHHHT--TCSEEEEEESST-HHHHHHHHHHHTT-CTTTEEEEESCTTTSCCSCSCEEEEE
T ss_pred             hcCCCEEEEeeccC-cHHHHHHHHc--CCCEEEEEChHH-HHHHHHHHHHHcC-CCCcEEEEEeeHHHhcCCCCcEEEEE
Confidence            46789999999997 5566778872  345999999997 9999999999999 78899999999988765546799998


Q ss_pred             hhhh--ccCChhHHHHHHHHHHhhccCCcEEE
Q 042119          208 LAAL--VGMSKEEKLTILGHIRKYMKDGGILL  237 (286)
Q Consensus       208 ~aal--vg~~~~~k~~vl~~l~~~l~pgg~lv  237 (286)
                      ...+  ..........++..+.+.|||||+++
T Consensus       137 s~~~~~~l~~~~~~~~~l~~~~~~LkpgG~li  168 (340)
T 2fyt_A          137 SEWMGYFLLFESMLDSVLYAKNKYLAKGGSVY  168 (340)
T ss_dssp             ECCCBTTBTTTCHHHHHHHHHHHHEEEEEEEE
T ss_pred             EcCchhhccCHHHHHHHHHHHHhhcCCCcEEE
Confidence            5431  11233456789999999999999998

>3r0q_C Probable protein arginine N-methyltransferase 4.2; arginine methyltransferase, methylation; HET: SAH; 2.61A {Arabidopsis thaliana}

Probab=99.43  E-value=6.7e-13  Score=125.62  Aligned_cols=106  Identities=14%  Similarity=0.227  Sum_probs=87.1

Q ss_pred             CCCCCEEEEeccCCChhhHHHHHhhcCCCc-EEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEccccchhhcCCCccee
Q 042119          128 VVQPKKVAFVGSGPMPLTSIIMAKHHLTST-HFDNFDIDEAANDVARSIVASDAEFEGRMKFLTRDIMEVKEQLGEYDCI  206 (286)
Q Consensus       128 ~~~~~~VL~IG~G~lp~tai~lA~~~~~g~-~V~~iDid~~ai~~Ar~~~~~~g~l~~~i~f~~~D~~~~~~~l~~fD~V  206 (286)
                      ..++++|||||||+ |..++.+|+   .|+ +|+|+|+| ++++.|++.++..| +.++++|+++|+.++..+ +.||+|
T Consensus        61 ~~~~~~VLDlGcGt-G~ls~~la~---~g~~~V~gvD~s-~~~~~a~~~~~~~~-~~~~v~~~~~d~~~~~~~-~~~D~I  133 (376)
T 3r0q_C           61 HFEGKTVLDVGTGS-GILAIWSAQ---AGARKVYAVEAT-KMADHARALVKANN-LDHIVEVIEGSVEDISLP-EKVDVI  133 (376)
T ss_dssp             TTTTCEEEEESCTT-THHHHHHHH---TTCSEEEEEESS-TTHHHHHHHHHHTT-CTTTEEEEESCGGGCCCS-SCEEEE
T ss_pred             cCCCCEEEEeccCc-CHHHHHHHh---cCCCEEEEEccH-HHHHHHHHHHHHcC-CCCeEEEEECchhhcCcC-CcceEE
Confidence            47889999999996 667788888   355 99999999 99999999999999 788999999999887655 689999


Q ss_pred             ehhhhc--cCChhHHHHHHHHHHhhccCCcEEEEee
Q 042119          207 FLAALV--GMSKEEKLTILGHIRKYMKDGGILLVRS  240 (286)
Q Consensus       207 ~~aalv--g~~~~~k~~vl~~l~~~l~pgg~lv~r~  240 (286)
                      +...+.  .........++..+.+.|+|||+++...
T Consensus       134 v~~~~~~~l~~e~~~~~~l~~~~~~LkpgG~li~~~  169 (376)
T 3r0q_C          134 ISEWMGYFLLRESMFDSVISARDRWLKPTGVMYPSH  169 (376)
T ss_dssp             EECCCBTTBTTTCTHHHHHHHHHHHEEEEEEEESSE
T ss_pred             EEcChhhcccchHHHHHHHHHHHhhCCCCeEEEEec
Confidence            864321  1122456789999999999999998753

>2qe6_A Uncharacterized protein TFU_2867; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; HET: NEP SAM; 1.95A {Thermobifida fusca}

Probab=99.43  E-value=8.5e-13  Score=119.77  Aligned_cols=107  Identities=18%  Similarity=0.224  Sum_probs=82.2

Q ss_pred             CCCEEEEeccCC--ChhhHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEccccchh----------
Q 042119          130 QPKKVAFVGSGP--MPLTSIIMAKHHLTSTHFDNFDIDEAANDVARSIVASDAEFEGRMKFLTRDIMEVK----------  197 (286)
Q Consensus       130 ~~~~VL~IG~G~--lp~tai~lA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~g~l~~~i~f~~~D~~~~~----------  197 (286)
                      ...+|||||||+  .|..+..+++ ..++++|+++|+||.+++.|++.+..    ..+++|+++|+.+..          
T Consensus        77 ~~~~vLDlGcG~pt~G~~~~~~~~-~~p~~~v~~vD~sp~~l~~Ar~~~~~----~~~v~~~~~D~~~~~~~~~~~~~~~  151 (274)
T 2qe6_A           77 GISQFLDLGSGLPTVQNTHEVAQS-VNPDARVVYVDIDPMVLTHGRALLAK----DPNTAVFTADVRDPEYILNHPDVRR  151 (274)
T ss_dssp             CCCEEEEETCCSCCSSCHHHHHHH-HCTTCEEEEEESSHHHHHHHHHHHTT----CTTEEEEECCTTCHHHHHHSHHHHH
T ss_pred             CCCEEEEECCCCCCCChHHHHHHH-hCCCCEEEEEECChHHHHHHHHhcCC----CCCeEEEEeeCCCchhhhccchhhc
Confidence            458999999995  0344444444 46899999999999999999998742    258999999997632          


Q ss_pred             -hcCCCcceeehhhhc-cCChhHHHHHHHHHHhhccCCcEEEEeec
Q 042119          198 -EQLGEYDCIFLAALV-GMSKEEKLTILGHIRKYMKDGGILLVRSA  241 (286)
Q Consensus       198 -~~l~~fD~V~~aalv-g~~~~~k~~vl~~l~~~l~pgg~lv~r~~  241 (286)
                       .+++.||+|+....+ .++.++...+++++++.|+|||.|++...
T Consensus       152 ~~d~~~~d~v~~~~vlh~~~d~~~~~~l~~~~~~L~pGG~l~i~~~  197 (274)
T 2qe6_A          152 MIDFSRPAAIMLVGMLHYLSPDVVDRVVGAYRDALAPGSYLFMTSL  197 (274)
T ss_dssp             HCCTTSCCEEEETTTGGGSCTTTHHHHHHHHHHHSCTTCEEEEEEE
T ss_pred             cCCCCCCEEEEEechhhhCCcHHHHHHHHHHHHhCCCCcEEEEEEe
Confidence             233579999866544 34444578999999999999999998763

>3cvo_A Methyltransferase-like protein of unknown functio; rossman fold, structural genomics, joint center for structur genomics, JCSG; HET: MSE PG4; 1.80A {Silicibacter pomeroyi dss-3}

Probab=99.43  E-value=5.7e-13  Score=116.59  Aligned_cols=100  Identities=14%  Similarity=0.164  Sum_probs=83.3

Q ss_pred             CCCCEEEEeccCCChhhHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCC--CCCeEEEEccccch----------
Q 042119          129 VQPKKVAFVGSGPMPLTSIIMAKHHLTSTHFDNFDIDEAANDVARSIVASDAEF--EGRMKFLTRDIMEV----------  196 (286)
Q Consensus       129 ~~~~~VL~IG~G~lp~tai~lA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~g~l--~~~i~f~~~D~~~~----------  196 (286)
                      .++++||+||||   +|++++|+  .++++|++||.|++..+.|++.+++.| +  .++|+++.||+.+.          
T Consensus        29 ~~a~~VLEiGtG---ySTl~lA~--~~~g~VvtvE~d~~~~~~ar~~l~~~g-~~~~~~I~~~~gda~~~~~wg~p~~~~  102 (202)
T 3cvo_A           29 EEAEVILEYGSG---GSTVVAAE--LPGKHVTSVESDRAWARMMKAWLAANP-PAEGTEVNIVWTDIGPTGDWGHPVSDA  102 (202)
T ss_dssp             HHCSEEEEESCS---HHHHHHHT--STTCEEEEEESCHHHHHHHHHHHHHSC-CCTTCEEEEEECCCSSBCGGGCBSSST
T ss_pred             hCCCEEEEECch---HHHHHHHH--cCCCEEEEEeCCHHHHHHHHHHHHHcC-CCCCCceEEEEeCchhhhcccccccch
Confidence            467999999996   69999998  348999999999999999999999999 7  78999999997543          


Q ss_pred             -----hh---------cCCCcceeehhhhccCChhHHHHHHHHHHhhccCCcEEEEee
Q 042119          197 -----KE---------QLGEYDCIFLAALVGMSKEEKLTILGHIRKYMKDGGILLVRS  240 (286)
Q Consensus       197 -----~~---------~l~~fD~V~~aalvg~~~~~k~~vl~~l~~~l~pgg~lv~r~  240 (286)
                           +.         ..+.||+||+++-.    .  ...+....+.|+|||+|++.+
T Consensus       103 ~~~~l~~~~~~i~~~~~~~~fDlIfIDg~k----~--~~~~~~~l~~l~~GG~Iv~DN  154 (202)
T 3cvo_A          103 KWRSYPDYPLAVWRTEGFRHPDVVLVDGRF----R--VGCALATAFSITRPVTLLFDD  154 (202)
T ss_dssp             TGGGTTHHHHGGGGCTTCCCCSEEEECSSS----H--HHHHHHHHHHCSSCEEEEETT
T ss_pred             hhhhHHHHhhhhhccccCCCCCEEEEeCCC----c--hhHHHHHHHhcCCCeEEEEeC
Confidence                 10         12469999999642    2  356777889999999999986

>3ckk_A TRNA (guanine-N(7)-)-methyltransferase; mettl1, S-adenosyl-L-methionine, tRNA Pro structural genomics, structural genomics consortium, SGC; HET: SAM; 1.55A {Homo sapiens}

Probab=99.43  E-value=1.1e-12  Score=116.45  Aligned_cols=109  Identities=15%  Similarity=0.157  Sum_probs=81.5

Q ss_pred             CCCCCEEEEeccCCChhhHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHh------cCCCCCCeEEEEccccc-hh--h
Q 042119          128 VVQPKKVAFVGSGPMPLTSIIMAKHHLTSTHFDNFDIDEAANDVARSIVAS------DAEFEGRMKFLTRDIME-VK--E  198 (286)
Q Consensus       128 ~~~~~~VL~IG~G~lp~tai~lA~~~~~g~~V~~iDid~~ai~~Ar~~~~~------~g~l~~~i~f~~~D~~~-~~--~  198 (286)
                      ..++.+|||||||. |..++.+|+ ..++..|+|||+|+.+++.|++.+++      .+  ..+++|+++|+.+ ++  .
T Consensus        44 ~~~~~~vLDiGcG~-G~~~~~la~-~~p~~~v~GiDis~~~l~~A~~~~~~l~~~~~~~--~~nv~~~~~d~~~~l~~~~  119 (235)
T 3ckk_A           44 AQAQVEFADIGCGY-GGLLVELSP-LFPDTLILGLEIRVKVSDYVQDRIRALRAAPAGG--FQNIACLRSNAMKHLPNFF  119 (235)
T ss_dssp             --CCEEEEEETCTT-CHHHHHHGG-GSTTSEEEEEESCHHHHHHHHHHHHHHHHSTTCC--CTTEEEEECCTTTCHHHHC
T ss_pred             cCCCCeEEEEccCC-cHHHHHHHH-HCCCCeEEEEECCHHHHHHHHHHHHHHHHHHhcC--CCeEEEEECcHHHhhhhhC
Confidence            35678999999996 666778887 47899999999999999999998765      34  2689999999987 44  2


Q ss_pred             cCCCcceeehhhhccCCh--hHH-----HHHHHHHHhhccCCcEEEEee
Q 042119          199 QLGEYDCIFLAALVGMSK--EEK-----LTILGHIRKYMKDGGILLVRS  240 (286)
Q Consensus       199 ~l~~fD~V~~aalvg~~~--~~k-----~~vl~~l~~~l~pgg~lv~r~  240 (286)
                      +.+.||.|++...-.+.+  ..|     ..+++++.+.|+|||.+++.+
T Consensus       120 ~~~~~D~v~~~~~dp~~k~~h~krr~~~~~~l~~~~~~LkpGG~l~~~t  168 (235)
T 3ckk_A          120 YKGQLTKMFFLFPDPHFKRTKHKWRIISPTLLAEYAYVLRVGGLVYTIT  168 (235)
T ss_dssp             CTTCEEEEEEESCC-----------CCCHHHHHHHHHHEEEEEEEEEEE
T ss_pred             CCcCeeEEEEeCCCchhhhhhhhhhhhhHHHHHHHHHHCCCCCEEEEEe
Confidence            345799998542111110  011     369999999999999999875

>3id6_C Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase; C/D guide RNA, 2'-O-methylation, coiled-coil, methyltransfer binding, rRNA processing; HET: SAM; 2.60A {Sulfolobus solfataricus} SCOP: c.66.1.0 PDB: 3id5_B* 3pla_E*

Probab=99.43  E-value=2.8e-12  Score=114.36  Aligned_cols=147  Identities=14%  Similarity=0.149  Sum_probs=95.4

Q ss_pred             cCCCCCCEEEEeccCCChhhHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEccccchhh--c-CCC
Q 042119          126 NGVVQPKKVAFVGSGPMPLTSIIMAKHHLTSTHFDNFDIDEAANDVARSIVASDAEFEGRMKFLTRDIMEVKE--Q-LGE  202 (286)
Q Consensus       126 ~~~~~~~~VL~IG~G~lp~tai~lA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~g~l~~~i~f~~~D~~~~~~--~-l~~  202 (286)
                      ..++++.+|||+||||++ .+..+|+...++++|+++|+++.+++...+.+++.    .++.++++|+.+...  . .+.
T Consensus        72 ~~l~~g~~VLDlG~GtG~-~t~~la~~v~~~G~V~avD~s~~~l~~l~~~a~~r----~nv~~i~~Da~~~~~~~~~~~~  146 (232)
T 3id6_C           72 NPIRKGTKVLYLGAASGT-TISHVSDIIELNGKAYGVEFSPRVVRELLLVAQRR----PNIFPLLADARFPQSYKSVVEN  146 (232)
T ss_dssp             CSCCTTCEEEEETCTTSH-HHHHHHHHHTTTSEEEEEECCHHHHHHHHHHHHHC----TTEEEEECCTTCGGGTTTTCCC
T ss_pred             cCCCCCCEEEEEeecCCH-HHHHHHHHhCCCCEEEEEECcHHHHHHHHHHhhhc----CCeEEEEcccccchhhhccccc
Confidence            346899999999999855 55667764557889999999999976655554442    479999999976432  1 247


Q ss_pred             cceeehhhhccCChhHHHHHH-HHHHhhccCCcEEEEeecCcc-eeeeccc--CCc--ccc--cCcEEEEEec--Ccccc
Q 042119          203 YDCIFLAALVGMSKEEKLTIL-GHIRKYMKDGGILLVRSAKGA-RAFLYPV--VVE--HDL--LDFEVLSAVH--PNDDV  272 (286)
Q Consensus       203 fD~V~~aalvg~~~~~k~~vl-~~l~~~l~pgg~lv~r~~~g~-r~~lyp~--v~~--~~l--~gf~~~~~~~--P~~~v  272 (286)
                      ||+||.+...    ++..+++ ..+.+.|||||.+++.-..+. ..-..|.  ++.  ..+  .||+++.+..  |..+ 
T Consensus       147 ~D~I~~d~a~----~~~~~il~~~~~~~LkpGG~lvisik~~~~d~t~~~~e~~~~~~~~L~~~gf~~~~~~~l~p~~~-  221 (232)
T 3id6_C          147 VDVLYVDIAQ----PDQTDIAIYNAKFFLKVNGDMLLVIKARSIDVTKDPKEIYKTEVEKLENSNFETIQIINLDPYDK-  221 (232)
T ss_dssp             EEEEEECCCC----TTHHHHHHHHHHHHEEEEEEEEEEEC-------CCSSSSTTHHHHHHHHTTEEEEEEEECTTTCS-
T ss_pred             eEEEEecCCC----hhHHHHHHHHHHHhCCCCeEEEEEEccCCcccCCCHHHHHHHHHHHHHHCCCEEEEEeccCCCcC-
Confidence            9999976432    3333444 555669999999998632211 0011121  111  112  4899987665  5544 


Q ss_pred             eeeeEEEeec
Q 042119          273 INSVVLVRNS  282 (286)
Q Consensus       273 insvi~~r~~  282 (286)
                      ....|++|++
T Consensus       222 ~h~~v~~~~~  231 (232)
T 3id6_C          222 DHAIVLSKYK  231 (232)
T ss_dssp             SCEEEEEEEC
T ss_pred             ceEEEEEEeC
Confidence            4568888875

>3d2l_A SAM-dependent methyltransferase; ZP_00538691.1, structural G joint center for structural genomics, JCSG; HET: MSE; 1.90A {Exiguobacterium sibiricum 255-15}

Probab=99.42  E-value=1e-12  Score=114.56  Aligned_cols=102  Identities=19%  Similarity=0.330  Sum_probs=83.9

Q ss_pred             CCCCEEEEeccCCChhhHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEccccchhhcCCCcceeeh
Q 042119          129 VQPKKVAFVGSGPMPLTSIIMAKHHLTSTHFDNFDIDEAANDVARSIVASDAEFEGRMKFLTRDIMEVKEQLGEYDCIFL  208 (286)
Q Consensus       129 ~~~~~VL~IG~G~lp~tai~lA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~g~l~~~i~f~~~D~~~~~~~l~~fD~V~~  208 (286)
                      .++.+||+||||+ |..+..+++   . .+|+++|+|+++++.|++.+...+   .+++++++|+.+.+.+ +.||+|+.
T Consensus        32 ~~~~~vLdiG~G~-G~~~~~l~~---~-~~v~~vD~s~~~~~~a~~~~~~~~---~~~~~~~~d~~~~~~~-~~fD~v~~  102 (243)
T 3d2l_A           32 EPGKRIADIGCGT-GTATLLLAD---H-YEVTGVDLSEEMLEIAQEKAMETN---RHVDFWVQDMRELELP-EPVDAITI  102 (243)
T ss_dssp             CTTCEEEEESCTT-CHHHHHHTT---T-SEEEEEESCHHHHHHHHHHHHHTT---CCCEEEECCGGGCCCS-SCEEEEEE
T ss_pred             CCCCeEEEecCCC-CHHHHHHhh---C-CeEEEEECCHHHHHHHHHhhhhcC---CceEEEEcChhhcCCC-CCcCEEEE
Confidence            4678999999997 566677777   3 899999999999999999988876   4799999999876554 67999986


Q ss_pred             hh--hccC-ChhHHHHHHHHHHhhccCCcEEEEe
Q 042119          209 AA--LVGM-SKEEKLTILGHIRKYMKDGGILLVR  239 (286)
Q Consensus       209 aa--lvg~-~~~~k~~vl~~l~~~l~pgg~lv~r  239 (286)
                      ..  +-.+ +.++..++++++.+.|+|||.+++.
T Consensus       103 ~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~  136 (243)
T 3d2l_A          103 LCDSLNYLQTEADVKQTFDSAARLLTDGGKLLFD  136 (243)
T ss_dssp             CTTGGGGCCSHHHHHHHHHHHHHHEEEEEEEEEE
T ss_pred             eCCchhhcCCHHHHHHHHHHHHHhcCCCeEEEEE
Confidence            43  2222 4567788999999999999999984

>2esr_A Methyltransferase; structural genomics, hypothetical protein, streptococcus PYO PSI, protein structure initiative; HET: GLC; 1.80A {Streptococcus pyogenes} SCOP: c.66.1.46

Probab=99.42  E-value=6e-13  Score=111.19  Aligned_cols=108  Identities=12%  Similarity=0.163  Sum_probs=85.5

Q ss_pred             CCCCCEEEEeccCCChhhHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEccccchhh-cCCCccee
Q 042119          128 VVQPKKVAFVGSGPMPLTSIIMAKHHLTSTHFDNFDIDEAANDVARSIVASDAEFEGRMKFLTRDIMEVKE-QLGEYDCI  206 (286)
Q Consensus       128 ~~~~~~VL~IG~G~lp~tai~lA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~g~l~~~i~f~~~D~~~~~~-~l~~fD~V  206 (286)
                      ..++.+|||+|||+ |..++.++++  +..+|+++|+|+++++.|++.++..| +.++++|+++|+.+... ..+.||+|
T Consensus        29 ~~~~~~vLDlGcG~-G~~~~~l~~~--~~~~v~~vD~~~~~~~~a~~~~~~~~-~~~~~~~~~~d~~~~~~~~~~~fD~i  104 (177)
T 2esr_A           29 YFNGGRVLDLFAGS-GGLAIEAVSR--GMSAAVLVEKNRKAQAIIQDNIIMTK-AENRFTLLKMEAERAIDCLTGRFDLV  104 (177)
T ss_dssp             CCCSCEEEEETCTT-CHHHHHHHHT--TCCEEEEECCCHHHHHHHHHHHHTTT-CGGGEEEECSCHHHHHHHBCSCEEEE
T ss_pred             hcCCCeEEEeCCCC-CHHHHHHHHc--CCCEEEEEECCHHHHHHHHHHHHHcC-CCCceEEEECcHHHhHHhhcCCCCEE
Confidence            35788999999996 5666777772  55799999999999999999999998 67789999999987433 23469999


Q ss_pred             ehhhhccCChhHHHHHHHHHH--hhccCCcEEEEeec
Q 042119          207 FLAALVGMSKEEKLTILGHIR--KYMKDGGILLVRSA  241 (286)
Q Consensus       207 ~~aalvg~~~~~k~~vl~~l~--~~l~pgg~lv~r~~  241 (286)
                      +.....  ......++++.+.  +.|+|||++++...
T Consensus       105 ~~~~~~--~~~~~~~~~~~l~~~~~L~~gG~l~~~~~  139 (177)
T 2esr_A          105 FLDPPY--AKETIVATIEALAAKNLLSEQVMVVCETD  139 (177)
T ss_dssp             EECCSS--HHHHHHHHHHHHHHTTCEEEEEEEEEEEE
T ss_pred             EECCCC--CcchHHHHHHHHHhCCCcCCCcEEEEEEC
Confidence            975321  1245567788887  99999999999764

>3grz_A L11 mtase, ribosomal protein L11 methyltransferase; methylase, SAM-binding domain, PSI-2, nysgxrc; 2.00A {Lactobacillus delbrueckii subsp}

Probab=99.42  E-value=7.2e-13  Score=113.44  Aligned_cols=102  Identities=21%  Similarity=0.309  Sum_probs=84.3

Q ss_pred             CCCCCEEEEeccCCChhhHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEccccchhhcCCCcceee
Q 042119          128 VVQPKKVAFVGSGPMPLTSIIMAKHHLTSTHFDNFDIDEAANDVARSIVASDAEFEGRMKFLTRDIMEVKEQLGEYDCIF  207 (286)
Q Consensus       128 ~~~~~~VL~IG~G~lp~tai~lA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~g~l~~~i~f~~~D~~~~~~~l~~fD~V~  207 (286)
                      ..++.+|||||||+ |..++.+++  .+..+|+++|+|+++++.|++.+...| +.+ +++.++|+.+..  .+.||+|+
T Consensus        58 ~~~~~~vLDiG~G~-G~~~~~l~~--~~~~~v~~vD~s~~~~~~a~~~~~~~~-~~~-v~~~~~d~~~~~--~~~fD~i~  130 (205)
T 3grz_A           58 MVKPLTVADVGTGS-GILAIAAHK--LGAKSVLATDISDESMTAAEENAALNG-IYD-IALQKTSLLADV--DGKFDLIV  130 (205)
T ss_dssp             CSSCCEEEEETCTT-SHHHHHHHH--TTCSEEEEEESCHHHHHHHHHHHHHTT-CCC-CEEEESSTTTTC--CSCEEEEE
T ss_pred             ccCCCEEEEECCCC-CHHHHHHHH--CCCCEEEEEECCHHHHHHHHHHHHHcC-CCc-eEEEeccccccC--CCCceEEE
Confidence            46789999999997 566677887  355699999999999999999999988 444 999999997643  26899998


Q ss_pred             hhhhccCChhHHHHHHHHHHhhccCCcEEEEee
Q 042119          208 LAALVGMSKEEKLTILGHIRKYMKDGGILLVRS  240 (286)
Q Consensus       208 ~aalvg~~~~~k~~vl~~l~~~l~pgg~lv~r~  240 (286)
                      .....    +...++++++.+.|+|||.+++..
T Consensus       131 ~~~~~----~~~~~~l~~~~~~L~~gG~l~~~~  159 (205)
T 3grz_A          131 ANILA----EILLDLIPQLDSHLNEDGQVIFSG  159 (205)
T ss_dssp             EESCH----HHHHHHGGGSGGGEEEEEEEEEEE
T ss_pred             ECCcH----HHHHHHHHHHHHhcCCCCEEEEEe
Confidence            76433    456789999999999999999864

>1xtp_A LMAJ004091AAA; SGPP, structural genomics, PSI, protein structure initiative dependent methyltransferase; HET: SAI; 1.94A {Leishmania major} SCOP: c.66.1.42

Probab=99.42  E-value=1e-12  Score=115.44  Aligned_cols=109  Identities=11%  Similarity=0.091  Sum_probs=86.8

Q ss_pred             hcCCCCCCEEEEeccCCChhhHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEccccchhhcCCCcc
Q 042119          125 ENGVVQPKKVAFVGSGPMPLTSIIMAKHHLTSTHFDNFDIDEAANDVARSIVASDAEFEGRMKFLTRDIMEVKEQLGEYD  204 (286)
Q Consensus       125 ~~~~~~~~~VL~IG~G~lp~tai~lA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~g~l~~~i~f~~~D~~~~~~~l~~fD  204 (286)
                      .....++.+|||||||+ |..+..++++  ...+|+++|+|+.+++.|++.+...    .+++|+++|+.+++...+.||
T Consensus        88 ~l~~~~~~~vLDiG~G~-G~~~~~l~~~--~~~~v~~vD~s~~~~~~a~~~~~~~----~~~~~~~~d~~~~~~~~~~fD  160 (254)
T 1xtp_A           88 SLPGHGTSRALDCGAGI-GRITKNLLTK--LYATTDLLEPVKHMLEEAKRELAGM----PVGKFILASMETATLPPNTYD  160 (254)
T ss_dssp             TSTTCCCSEEEEETCTT-THHHHHTHHH--HCSEEEEEESCHHHHHHHHHHTTTS----SEEEEEESCGGGCCCCSSCEE
T ss_pred             hhcccCCCEEEEECCCc-CHHHHHHHHh--hcCEEEEEeCCHHHHHHHHHHhccC----CceEEEEccHHHCCCCCCCeE
Confidence            34456789999999997 5566677763  2568999999999999999985542    479999999988665556899


Q ss_pred             eeehhhhc-cCChhHHHHHHHHHHhhccCCcEEEEee
Q 042119          205 CIFLAALV-GMSKEEKLTILGHIRKYMKDGGILLVRS  240 (286)
Q Consensus       205 ~V~~aalv-g~~~~~k~~vl~~l~~~l~pgg~lv~r~  240 (286)
                      +|+....+ ..+.++..++++++.+.|+|||.+++..
T Consensus       161 ~v~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~i~~  197 (254)
T 1xtp_A          161 LIVIQWTAIYLTDADFVKFFKHCQQALTPNGYIFFKE  197 (254)
T ss_dssp             EEEEESCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred             EEEEcchhhhCCHHHHHHHHHHHHHhcCCCeEEEEEe
Confidence            99876543 4444677899999999999999999976

>3gwz_A MMCR; methyltransferase, mitomycin, S-adenosyl methionine, transferase; HET: MSE SAH; 1.91A {Streptomyces lavendulae} PDB: 3gxo_A*

Probab=99.42  E-value=1.9e-12  Score=121.77  Aligned_cols=111  Identities=15%  Similarity=0.204  Sum_probs=91.3

Q ss_pred             HhcCCCCCCEEEEeccCCChhhHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEccccchhhcCCCc
Q 042119          124 SENGVVQPKKVAFVGSGPMPLTSIIMAKHHLTSTHFDNFDIDEAANDVARSIVASDAEFEGRMKFLTRDIMEVKEQLGEY  203 (286)
Q Consensus       124 ~~~~~~~~~~VL~IG~G~lp~tai~lA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~g~l~~~i~f~~~D~~~~~~~l~~f  203 (286)
                      ......++.+|+|||||+ |..+..+++ .+|+.+++++|+ |++++.|++.+...| +.++|+|+.+|..+ +.+ .+|
T Consensus       196 ~~~~~~~~~~vlDvG~G~-G~~~~~l~~-~~p~~~~~~~D~-~~~~~~a~~~~~~~~-l~~~v~~~~~d~~~-~~p-~~~  269 (369)
T 3gwz_A          196 AAYDFSGAATAVDIGGGR-GSLMAAVLD-AFPGLRGTLLER-PPVAEEARELLTGRG-LADRCEILPGDFFE-TIP-DGA  269 (369)
T ss_dssp             HHSCCTTCSEEEEETCTT-SHHHHHHHH-HCTTCEEEEEEC-HHHHHHHHHHHHHTT-CTTTEEEEECCTTT-CCC-SSC
T ss_pred             HhCCCccCcEEEEeCCCc-cHHHHHHHH-HCCCCeEEEEcC-HHHHHHHHHhhhhcC-cCCceEEeccCCCC-CCC-CCc
Confidence            344457789999999997 566677777 488999999999 999999999999998 78899999999863 222 279


Q ss_pred             ceeehhhhc-cCChhHHHHHHHHHHhhccCCcEEEEee
Q 042119          204 DCIFLAALV-GMSKEEKLTILGHIRKYMKDGGILLVRS  240 (286)
Q Consensus       204 D~V~~aalv-g~~~~~k~~vl~~l~~~l~pgg~lv~r~  240 (286)
                      |+|++...+ .++.+...++++++++.|+|||.+++.+
T Consensus       270 D~v~~~~vlh~~~d~~~~~~L~~~~~~L~pgG~l~i~e  307 (369)
T 3gwz_A          270 DVYLIKHVLHDWDDDDVVRILRRIATAMKPDSRLLVID  307 (369)
T ss_dssp             SEEEEESCGGGSCHHHHHHHHHHHHTTCCTTCEEEEEE
T ss_pred             eEEEhhhhhccCCHHHHHHHHHHHHHHcCCCCEEEEEE
Confidence            999876544 5566666789999999999999999865

>3mcz_A O-methyltransferase; adomet_mtases, S-adenosylmethionine-dependent methyltransfer structural genomics, PSI-2; HET: MSE; 1.90A {Burkholderia thailandensis}

Probab=99.42  E-value=8.1e-13  Score=122.64  Aligned_cols=115  Identities=21%  Similarity=0.394  Sum_probs=92.8

Q ss_pred             HHHhcCCCC-CCEEEEeccCCChhhHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEccccchhh-c
Q 042119          122 ILSENGVVQ-PKKVAFVGSGPMPLTSIIMAKHHLTSTHFDNFDIDEAANDVARSIVASDAEFEGRMKFLTRDIMEVKE-Q  199 (286)
Q Consensus       122 ~l~~~~~~~-~~~VL~IG~G~lp~tai~lA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~g~l~~~i~f~~~D~~~~~~-~  199 (286)
                      .+......+ +.+|||||||+ |..+..+++ .+|+.+++++|+ |++++.|++.+...| +.++++|+.+|..+.+. .
T Consensus       170 ~l~~~~~~~~~~~vlDvG~G~-G~~~~~l~~-~~p~~~~~~~D~-~~~~~~a~~~~~~~~-~~~~v~~~~~d~~~~~~~~  245 (352)
T 3mcz_A          170 VVSELGVFARARTVIDLAGGH-GTYLAQVLR-RHPQLTGQIWDL-PTTRDAARKTIHAHD-LGGRVEFFEKNLLDARNFE  245 (352)
T ss_dssp             HHHTCGGGTTCCEEEEETCTT-CHHHHHHHH-HCTTCEEEEEEC-GGGHHHHHHHHHHTT-CGGGEEEEECCTTCGGGGT
T ss_pred             HHHhCCCcCCCCEEEEeCCCc-CHHHHHHHH-hCCCCeEEEEEC-HHHHHHHHHHHHhcC-CCCceEEEeCCcccCcccC
Confidence            333444455 89999999997 556667777 478999999999 899999999999988 77899999999977542 2


Q ss_pred             CCCcceeehhhhc-cCChhHHHHHHHHHHhhccCCcEEEEee
Q 042119          200 LGEYDCIFLAALV-GMSKEEKLTILGHIRKYMKDGGILLVRS  240 (286)
Q Consensus       200 l~~fD~V~~aalv-g~~~~~k~~vl~~l~~~l~pgg~lv~r~  240 (286)
                      .++||+|+..... .++.++..++++++++.|+|||.+++.+
T Consensus       246 ~~~~D~v~~~~vlh~~~~~~~~~~l~~~~~~L~pgG~l~i~e  287 (352)
T 3mcz_A          246 GGAADVVMLNDCLHYFDAREAREVIGHAAGLVKPGGALLILT  287 (352)
T ss_dssp             TCCEEEEEEESCGGGSCHHHHHHHHHHHHHTEEEEEEEEEEE
T ss_pred             CCCccEEEEecccccCCHHHHHHHHHHHHHHcCCCCEEEEEE
Confidence            2469999976544 5566667899999999999999998865

>2fhp_A Methylase, putative; alpha-beta-alpha sandwich, structural genomics, PSI, protein structure initiative; HET: MSE; 1.60A {Enterococcus faecalis} SCOP: c.66.1.46

Probab=99.42  E-value=5.1e-13  Score=111.89  Aligned_cols=108  Identities=16%  Similarity=0.122  Sum_probs=83.9

Q ss_pred             CCCCEEEEeccCCChhhHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEccccchhhc----CCCcc
Q 042119          129 VQPKKVAFVGSGPMPLTSIIMAKHHLTSTHFDNFDIDEAANDVARSIVASDAEFEGRMKFLTRDIMEVKEQ----LGEYD  204 (286)
Q Consensus       129 ~~~~~VL~IG~G~lp~tai~lA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~g~l~~~i~f~~~D~~~~~~~----l~~fD  204 (286)
                      .++.+|||+|||+ |..++.+++  .+..+|+++|+|+++++.|++.++..| +.++++|+++|+.+....    .+.||
T Consensus        43 ~~~~~vLD~GcG~-G~~~~~~~~--~~~~~v~~vD~~~~~~~~a~~~~~~~~-~~~~~~~~~~d~~~~~~~~~~~~~~fD  118 (187)
T 2fhp_A           43 FDGGMALDLYSGS-GGLAIEAVS--RGMDKSICIEKNFAALKVIKENIAITK-EPEKFEVRKMDANRALEQFYEEKLQFD  118 (187)
T ss_dssp             CSSCEEEETTCTT-CHHHHHHHH--TTCSEEEEEESCHHHHHHHHHHHHHHT-CGGGEEEEESCHHHHHHHHHHTTCCEE
T ss_pred             cCCCCEEEeCCcc-CHHHHHHHH--cCCCEEEEEECCHHHHHHHHHHHHHhC-CCcceEEEECcHHHHHHHHHhcCCCCC
Confidence            5778999999997 555566666  255799999999999999999999988 677899999999875432    45799


Q ss_pred             eeehhhhccCChhHHHHHHHHH--HhhccCCcEEEEeecC
Q 042119          205 CIFLAALVGMSKEEKLTILGHI--RKYMKDGGILLVRSAK  242 (286)
Q Consensus       205 ~V~~aalvg~~~~~k~~vl~~l--~~~l~pgg~lv~r~~~  242 (286)
                      +|+......  .....+++..+  .+.|+|||.+++....
T Consensus       119 ~i~~~~~~~--~~~~~~~~~~l~~~~~L~~gG~l~~~~~~  156 (187)
T 2fhp_A          119 LVLLDPPYA--KQEIVSQLEKMLERQLLTNEAVIVCETDK  156 (187)
T ss_dssp             EEEECCCGG--GCCHHHHHHHHHHTTCEEEEEEEEEEEET
T ss_pred             EEEECCCCC--chhHHHHHHHHHHhcccCCCCEEEEEeCC
Confidence            999753211  12345677777  8889999999987643

>3lpm_A Putative methyltransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium, nysgxrc; 2.40A {Listeria monocytogenes}

Probab=99.41  E-value=2.1e-12  Score=115.27  Aligned_cols=109  Identities=15%  Similarity=0.199  Sum_probs=85.7

Q ss_pred             CCC-CCCEEEEeccCCChhhHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEccccchhhc--CCCc
Q 042119          127 GVV-QPKKVAFVGSGPMPLTSIIMAKHHLTSTHFDNFDIDEAANDVARSIVASDAEFEGRMKFLTRDIMEVKEQ--LGEY  203 (286)
Q Consensus       127 ~~~-~~~~VL~IG~G~lp~tai~lA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~g~l~~~i~f~~~D~~~~~~~--l~~f  203 (286)
                      ... ++.+|||+|||+ |..++.+|++  ...+|+++|+|+++++.|++++...| +.++++++++|+.+....  .+.|
T Consensus        45 ~~~~~~~~vLDlG~G~-G~~~~~la~~--~~~~v~gvDi~~~~~~~a~~n~~~~~-~~~~v~~~~~D~~~~~~~~~~~~f  120 (259)
T 3lpm_A           45 YLPIRKGKIIDLCSGN-GIIPLLLSTR--TKAKIVGVEIQERLADMAKRSVAYNQ-LEDQIEIIEYDLKKITDLIPKERA  120 (259)
T ss_dssp             CCCSSCCEEEETTCTT-THHHHHHHTT--CCCEEEEECCSHHHHHHHHHHHHHTT-CTTTEEEECSCGGGGGGTSCTTCE
T ss_pred             cCCCCCCEEEEcCCch-hHHHHHHHHh--cCCcEEEEECCHHHHHHHHHHHHHCC-CcccEEEEECcHHHhhhhhccCCc
Confidence            345 789999999997 5666778873  33499999999999999999999999 788999999999887643  3579


Q ss_pred             ceeehhhhc------cC-------------ChhHHHHHHHHHHhhccCCcEEEEe
Q 042119          204 DCIFLAALV------GM-------------SKEEKLTILGHIRKYMKDGGILLVR  239 (286)
Q Consensus       204 D~V~~aalv------g~-------------~~~~k~~vl~~l~~~l~pgg~lv~r  239 (286)
                      |+|+...-.      +.             .......+++.+.+.|+|||++++-
T Consensus       121 D~Ii~npPy~~~~~~~~~~~~~~~~~a~~~~~~~~~~~l~~~~~~LkpgG~l~~~  175 (259)
T 3lpm_A          121 DIVTCNPPYFATPDTSLKNTNEHFRIARHEVMCTLEDTIRVAASLLKQGGKANFV  175 (259)
T ss_dssp             EEEEECCCC-----------------------HHHHHHHHHHHHHEEEEEEEEEE
T ss_pred             cEEEECCCCCCCccccCCCCchHHHhhhccccCCHHHHHHHHHHHccCCcEEEEE
Confidence            999873110      00             0123467999999999999999885

>2yxd_A Probable cobalt-precorrin-6Y C(15)-methyltransfer [decarboxylating]; alpha and beta protein (A/B) class; HET: MES; 2.30A {Methanocaldococcus jannaschii}

Probab=99.41  E-value=2.4e-12  Score=106.86  Aligned_cols=101  Identities=14%  Similarity=0.129  Sum_probs=84.3

Q ss_pred             cCCCCCCEEEEeccCCChhhHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEccccchhhcCCCcce
Q 042119          126 NGVVQPKKVAFVGSGPMPLTSIIMAKHHLTSTHFDNFDIDEAANDVARSIVASDAEFEGRMKFLTRDIMEVKEQLGEYDC  205 (286)
Q Consensus       126 ~~~~~~~~VL~IG~G~lp~tai~lA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~g~l~~~i~f~~~D~~~~~~~l~~fD~  205 (286)
                      ....++.+|||+|||+ |..++.+++   ++.+|+++|+|+++++.|++.++..| + ++++++++|+.+ ..+.+.||+
T Consensus        31 ~~~~~~~~vLdiG~G~-G~~~~~l~~---~~~~v~~vD~~~~~~~~a~~~~~~~~-~-~~~~~~~~d~~~-~~~~~~~D~  103 (183)
T 2yxd_A           31 LNLNKDDVVVDVGCGS-GGMTVEIAK---RCKFVYAIDYLDGAIEVTKQNLAKFN-I-KNCQIIKGRAED-VLDKLEFNK  103 (183)
T ss_dssp             HCCCTTCEEEEESCCC-SHHHHHHHT---TSSEEEEEECSHHHHHHHHHHHHHTT-C-CSEEEEESCHHH-HGGGCCCSE
T ss_pred             cCCCCCCEEEEeCCCC-CHHHHHHHh---cCCeEEEEeCCHHHHHHHHHHHHHcC-C-CcEEEEECCccc-cccCCCCcE
Confidence            3557889999999997 666677877   88999999999999999999999998 4 689999999987 333358999


Q ss_pred             eehhhhccCChhHHHHHHHHHHhhccCCcEEEEee
Q 042119          206 IFLAALVGMSKEEKLTILGHIRKYMKDGGILLVRS  240 (286)
Q Consensus       206 V~~aalvg~~~~~k~~vl~~l~~~l~pgg~lv~r~  240 (286)
                      |+....     ....++++.+.+.  |||.+++..
T Consensus       104 i~~~~~-----~~~~~~l~~~~~~--~gG~l~~~~  131 (183)
T 2yxd_A          104 AFIGGT-----KNIEKIIEILDKK--KINHIVANT  131 (183)
T ss_dssp             EEECSC-----SCHHHHHHHHHHT--TCCEEEEEE
T ss_pred             EEECCc-----ccHHHHHHHHhhC--CCCEEEEEe
Confidence            996643     4566799999988  999999876

>3bkx_A SAM-dependent methyltransferase; YP_807781.1, cyclopropane-fatty-acyl-phospholipid synthase-L protein, methyltransferase domain; 1.85A {Lactobacillus casei}

Probab=99.41  E-value=1.3e-12  Score=116.50  Aligned_cols=116  Identities=15%  Similarity=0.044  Sum_probs=87.5

Q ss_pred             HHHhcCCCCCCEEEEeccCCChhhHHHHHhhcCCCcEEEEEeCChH------HHHHHHHHHHhcCCCCCCeEEEEcc---
Q 042119          122 ILSENGVVQPKKVAFVGSGPMPLTSIIMAKHHLTSTHFDNFDIDEA------ANDVARSIVASDAEFEGRMKFLTRD---  192 (286)
Q Consensus       122 ~l~~~~~~~~~~VL~IG~G~lp~tai~lA~~~~~g~~V~~iDid~~------ai~~Ar~~~~~~g~l~~~i~f~~~D---  192 (286)
                      .+....+.++++|||||||+ |..+..++++..++++|+|+|+|++      +++.|++.+...| +.++++|+++|   
T Consensus        35 l~~~~~~~~~~~vLDiGcG~-G~~~~~l~~~~g~~~~v~gvD~s~~~~~~~~~~~~a~~~~~~~~-~~~~v~~~~~d~~~  112 (275)
T 3bkx_A           35 IAEAWQVKPGEKILEIGCGQ-GDLSAVLADQVGSSGHVTGIDIASPDYGAPLTLGQAWNHLLAGP-LGDRLTVHFNTNLS  112 (275)
T ss_dssp             HHHHHTCCTTCEEEEESCTT-SHHHHHHHHHHCTTCEEEEECSSCTTCCSSSCHHHHHHHHHTST-TGGGEEEECSCCTT
T ss_pred             HHHHcCCCCCCEEEEeCCCC-CHHHHHHHHHhCCCCEEEEEECCccccccHHHHHHHHHHHHhcC-CCCceEEEECChhh
Confidence            44445678899999999997 5666777773235589999999997      9999999999888 67799999998   


Q ss_pred             ccchhhcCCCcceeehhhhccCChhHHHHHHHHHHhhccCCcEEEEee
Q 042119          193 IMEVKEQLGEYDCIFLAALVGMSKEEKLTILGHIRKYMKDGGILLVRS  240 (286)
Q Consensus       193 ~~~~~~~l~~fD~V~~aalvg~~~~~k~~vl~~l~~~l~pgg~lv~r~  240 (286)
                      ..+++...+.||+|+....+.. .++...+++.+.+.++|||.+++.+
T Consensus       113 ~~~~~~~~~~fD~v~~~~~l~~-~~~~~~~~~~~~~l~~~gG~l~~~~  159 (275)
T 3bkx_A          113 DDLGPIADQHFDRVVLAHSLWY-FASANALALLFKNMAAVCDHVDVAE  159 (275)
T ss_dssp             TCCGGGTTCCCSEEEEESCGGG-SSCHHHHHHHHHHHTTTCSEEEEEE
T ss_pred             hccCCCCCCCEEEEEEccchhh-CCCHHHHHHHHHHHhCCCCEEEEEE
Confidence            4444444467999986544321 1334457777777777799999864

>3e23_A Uncharacterized protein RPA2492; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAM; 1.60A {Rhodopseudomonas palustris}

Probab=99.41  E-value=8.5e-13  Score=113.31  Aligned_cols=101  Identities=17%  Similarity=0.221  Sum_probs=83.3

Q ss_pred             CCCCCEEEEeccCCChhhHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEccccchhhcCCCcceee
Q 042119          128 VVQPKKVAFVGSGPMPLTSIIMAKHHLTSTHFDNFDIDEAANDVARSIVASDAEFEGRMKFLTRDIMEVKEQLGEYDCIF  207 (286)
Q Consensus       128 ~~~~~~VL~IG~G~lp~tai~lA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~g~l~~~i~f~~~D~~~~~~~l~~fD~V~  207 (286)
                      ..++.+|||||||+ |..+..+++   .|.+|+|+|+|+++++.|++.+   +     ++++++|+.+++ ..+.||+|+
T Consensus        41 ~~~~~~vLDiGcG~-G~~~~~l~~---~~~~v~~vD~s~~~~~~a~~~~---~-----~~~~~~d~~~~~-~~~~fD~v~  107 (211)
T 3e23_A           41 LPAGAKILELGCGA-GYQAEAMLA---AGFDVDATDGSPELAAEASRRL---G-----RPVRTMLFHQLD-AIDAYDAVW  107 (211)
T ss_dssp             SCTTCEEEESSCTT-SHHHHHHHH---TTCEEEEEESCHHHHHHHHHHH---T-----SCCEECCGGGCC-CCSCEEEEE
T ss_pred             cCCCCcEEEECCCC-CHHHHHHHH---cCCeEEEECCCHHHHHHHHHhc---C-----CceEEeeeccCC-CCCcEEEEE
Confidence            35788999999996 566777887   4889999999999999999985   3     578899998876 446899999


Q ss_pred             hhhhc-cCChhHHHHHHHHHHhhccCCcEEEEeec
Q 042119          208 LAALV-GMSKEEKLTILGHIRKYMKDGGILLVRSA  241 (286)
Q Consensus       208 ~aalv-g~~~~~k~~vl~~l~~~l~pgg~lv~r~~  241 (286)
                      ....+ .++.++...+++++.+.|+|||++++...
T Consensus       108 ~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~  142 (211)
T 3e23_A          108 AHACLLHVPRDELADVLKLIWRALKPGGLFYASYK  142 (211)
T ss_dssp             ECSCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred             ecCchhhcCHHHHHHHHHHHHHhcCCCcEEEEEEc
Confidence            76543 44556888999999999999999999753

>2p7i_A Hypothetical protein; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; 1.74A {Pectobacterium atrosepticum SCRI1043} SCOP: c.66.1.41 PDB: 2p7h_A

Probab=99.41  E-value=6.6e-13  Score=115.39  Aligned_cols=101  Identities=15%  Similarity=0.260  Sum_probs=80.9

Q ss_pred             CCCCEEEEeccCCChhhHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEccccchhhcCCCcceeeh
Q 042119          129 VQPKKVAFVGSGPMPLTSIIMAKHHLTSTHFDNFDIDEAANDVARSIVASDAEFEGRMKFLTRDIMEVKEQLGEYDCIFL  208 (286)
Q Consensus       129 ~~~~~VL~IG~G~lp~tai~lA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~g~l~~~i~f~~~D~~~~~~~l~~fD~V~~  208 (286)
                      .++.+|||||||+ |..+..+++   .+.+|+|+|+|+++++.|++.+   .   .+++|+++|+.+.. ..+.||+|+.
T Consensus        41 ~~~~~vLDiGcG~-G~~~~~l~~---~~~~v~gvD~s~~~~~~a~~~~---~---~~v~~~~~d~~~~~-~~~~fD~v~~  109 (250)
T 2p7i_A           41 FRPGNLLELGSFK-GDFTSRLQE---HFNDITCVEASEEAISHAQGRL---K---DGITYIHSRFEDAQ-LPRRYDNIVL  109 (250)
T ss_dssp             CCSSCEEEESCTT-SHHHHHHTT---TCSCEEEEESCHHHHHHHHHHS---C---SCEEEEESCGGGCC-CSSCEEEEEE
T ss_pred             cCCCcEEEECCCC-CHHHHHHHH---hCCcEEEEeCCHHHHHHHHHhh---h---CCeEEEEccHHHcC-cCCcccEEEE
Confidence            4678999999996 666777877   4669999999999999999873   2   27999999998763 3357999997


Q ss_pred             hhhccCChhHHHHHHHHHH-hhccCCcEEEEeec
Q 042119          209 AALVGMSKEEKLTILGHIR-KYMKDGGILLVRSA  241 (286)
Q Consensus       209 aalvg~~~~~k~~vl~~l~-~~l~pgg~lv~r~~  241 (286)
                      ...+.+ .++..++++++. +.|||||.+++...
T Consensus       110 ~~~l~~-~~~~~~~l~~~~~~~LkpgG~l~i~~~  142 (250)
T 2p7i_A          110 THVLEH-IDDPVALLKRINDDWLAEGGRLFLVCP  142 (250)
T ss_dssp             ESCGGG-CSSHHHHHHHHHHTTEEEEEEEEEEEE
T ss_pred             hhHHHh-hcCHHHHHHHHHHHhcCCCCEEEEEcC
Confidence            654422 245578999999 99999999999763

>4a6d_A Hydroxyindole O-methyltransferase; melatonin, circadian clock; HET: SAM; 2.40A {Homo sapiens} PDB: 4a6e_A*

Probab=99.40  E-value=1.4e-12  Score=122.33  Aligned_cols=147  Identities=19%  Similarity=0.207  Sum_probs=106.0

Q ss_pred             CCCCCCEEEEeccCCChhhHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEccccchhhcCCCccee
Q 042119          127 GVVQPKKVAFVGSGPMPLTSIIMAKHHLTSTHFDNFDIDEAANDVARSIVASDAEFEGRMKFLTRDIMEVKEQLGEYDCI  206 (286)
Q Consensus       127 ~~~~~~~VL~IG~G~lp~tai~lA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~g~l~~~i~f~~~D~~~~~~~l~~fD~V  206 (286)
                      ......+|+|||||+ |..++.+++ .+|+.+++.+|. |++++.|++.+...+  .+||+|+.+|..+  .+..++|+|
T Consensus       176 ~~~~~~~v~DvGgG~-G~~~~~l~~-~~p~~~~~~~dl-p~v~~~a~~~~~~~~--~~rv~~~~gD~~~--~~~~~~D~~  248 (353)
T 4a6d_A          176 DLSVFPLMCDLGGGA-GALAKECMS-LYPGCKITVFDI-PEVVWTAKQHFSFQE--EEQIDFQEGDFFK--DPLPEADLY  248 (353)
T ss_dssp             CGGGCSEEEEETCTT-SHHHHHHHH-HCSSCEEEEEEC-HHHHHHHHHHSCC----CCSEEEEESCTTT--SCCCCCSEE
T ss_pred             CcccCCeEEeeCCCC-CHHHHHHHH-hCCCceeEeccC-HHHHHHHHHhhhhcc--cCceeeecCcccc--CCCCCceEE
Confidence            346778999999996 666777777 589999999998 899999999876544  5899999999854  345679999


Q ss_pred             ehhhhc-cCChhHHHHHHHHHHhhccCCcEEEEeec----Ccc---eeeecc-----cC---C--cc---cc---cCcEE
Q 042119          207 FLAALV-GMSKEEKLTILGHIRKYMKDGGILLVRSA----KGA---RAFLYP-----VV---V--EH---DL---LDFEV  262 (286)
Q Consensus       207 ~~aalv-g~~~~~k~~vl~~l~~~l~pgg~lv~r~~----~g~---r~~lyp-----~v---~--~~---~l---~gf~~  262 (286)
                      ++...+ .|+.++..++|+++++.|+|||+|++.+.    .+-   ...+|.     ..   +  .+   ++   .||+.
T Consensus       249 ~~~~vlh~~~d~~~~~iL~~~~~al~pgg~lli~e~~~~~~~~~~~~~~~~dl~ml~~~~g~ert~~e~~~ll~~AGf~~  328 (353)
T 4a6d_A          249 ILARVLHDWADGKCSHLLERIYHTCKPGGGILVIESLLDEDRRGPLLTQLYSLNMLVQTEGQERTPTHYHMLLSSAGFRD  328 (353)
T ss_dssp             EEESSGGGSCHHHHHHHHHHHHHHCCTTCEEEEEECCCCTTSCCCHHHHHHHHHHHHSSSCCCCCHHHHHHHHHHHTCEE
T ss_pred             EeeeecccCCHHHHHHHHHHHHhhCCCCCEEEEEEeeeCCCCCCCHHHHHHHHHHHHhCCCcCCCHHHHHHHHHHCCCce
Confidence            876544 67777778999999999999999988752    110   001110     00   1  11   12   59987


Q ss_pred             EEEecCcccceeeeEEEeec
Q 042119          263 LSAVHPNDDVINSVVLVRNS  282 (286)
Q Consensus       263 ~~~~~P~~~vinsvi~~r~~  282 (286)
                      +.+ +|.+. ..++|+|||.
T Consensus       329 v~v-~~~~~-~~~~i~ArKg  346 (353)
T 4a6d_A          329 FQF-KKTGA-IYDAILARKG  346 (353)
T ss_dssp             EEE-ECCSS-SCEEEEEECC
T ss_pred             EEE-EEcCC-ceEEEEEEec
Confidence            654 55544 4579999994

>3fzg_A 16S rRNA methylase; methyltransferase, plasmid, transferase; HET: SAM; 2.00A {Escherichia coli}

Probab=99.40  E-value=2e-13  Score=118.63  Aligned_cols=105  Identities=13%  Similarity=0.158  Sum_probs=81.7

Q ss_pred             CCCCEEEEeccCCChhhHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEccccchhhcCCCcceeeh
Q 042119          129 VQPKKVAFVGSGPMPLTSIIMAKHHLTSTHFDNFDIDEAANDVARSIVASDAEFEGRMKFLTRDIMEVKEQLGEYDCIFL  208 (286)
Q Consensus       129 ~~~~~VL~IG~G~lp~tai~lA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~g~l~~~i~f~~~D~~~~~~~l~~fD~V~~  208 (286)
                      .++.+|||+|||. |.+|+.++. ..|+++|+++|+|+.|++.|++.++..| +..+++|  +|..+. ..-+.||+|+.
T Consensus        48 ~~~~~VLDlGCG~-GplAl~l~~-~~p~a~~~A~Di~~~~leiar~~~~~~g-~~~~v~~--~d~~~~-~~~~~~DvVLa  121 (200)
T 3fzg_A           48 KHVSSILDFGCGF-NPLALYQWN-ENEKIIYHAYDIDRAEIAFLSSIIGKLK-TTIKYRF--LNKESD-VYKGTYDVVFL  121 (200)
T ss_dssp             CCCSEEEEETCTT-HHHHHHHHC-SSCCCEEEEECSCHHHHHHHHHHHHHSC-CSSEEEE--ECCHHH-HTTSEEEEEEE
T ss_pred             CCCCeEEEecCCC-CHHHHHHHh-cCCCCEEEEEeCCHHHHHHHHHHHHhcC-CCccEEE--eccccc-CCCCCcChhhH
Confidence            5689999999996 556666766 4789999999999999999999999999 5556766  676543 23346999986


Q ss_pred             hhhccCChhHHHHHHHHHHhhccCCcEEEEee
Q 042119          209 AALVGMSKEEKLTILGHIRKYMKDGGILLVRS  240 (286)
Q Consensus       209 aalvg~~~~~k~~vl~~l~~~l~pgg~lv~r~  240 (286)
                      ..+++.- ++....+..+.+.|+|||++|--.
T Consensus       122 ~k~LHlL-~~~~~al~~v~~~L~pggvfISfp  152 (200)
T 3fzg_A          122 LKMLPVL-KQQDVNILDFLQLFHTQNFVISFP  152 (200)
T ss_dssp             ETCHHHH-HHTTCCHHHHHHTCEEEEEEEEEE
T ss_pred             hhHHHhh-hhhHHHHHHHHHHhCCCCEEEEeC
Confidence            6544222 455567779999999999998865

>2nxc_A L11 mtase, ribosomal protein L11 methyltransferase; transferase S-adenosly-L-methionine dependent methyltransfer posttranslational modification; 1.59A {Thermus thermophilus} SCOP: c.66.1.39 PDB: 1ufk_A 2nxe_A* 2nxj_A 2nxn_A 2zbp_A* 2zbq_A* 2zbr_A* 3cjq_A* 3cjr_A* 3cju_A* 3egv_A* 3cjt_A*

Probab=99.40  E-value=1.7e-12  Score=116.20  Aligned_cols=116  Identities=18%  Similarity=0.237  Sum_probs=90.3

Q ss_pred             hhhhhHHHHHHHHhcCCCCCCEEEEeccCCChhhHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEc
Q 042119          112 YVKLSKLEYTILSENGVVQPKKVAFVGSGPMPLTSIIMAKHHLTSTHFDNFDIDEAANDVARSIVASDAEFEGRMKFLTR  191 (286)
Q Consensus       112 y~~l~~~E~~~l~~~~~~~~~~VL~IG~G~lp~tai~lA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~g~l~~~i~f~~~  191 (286)
                      .....+.-...+.+. ..++.+|||+|||+ |..++.+++   .|.+|+++|+|+.+++.|+++++..| +.  +++.++
T Consensus       103 ~~~tt~~~~~~l~~~-~~~~~~VLDiGcG~-G~l~~~la~---~g~~v~gvDi~~~~v~~a~~n~~~~~-~~--v~~~~~  174 (254)
T 2nxc_A          103 HHETTRLALKALARH-LRPGDKVLDLGTGS-GVLAIAAEK---LGGKALGVDIDPMVLPQAEANAKRNG-VR--PRFLEG  174 (254)
T ss_dssp             CSHHHHHHHHHHHHH-CCTTCEEEEETCTT-SHHHHHHHH---TTCEEEEEESCGGGHHHHHHHHHHTT-CC--CEEEES
T ss_pred             CCHHHHHHHHHHHHh-cCCCCEEEEecCCC-cHHHHHHHH---hCCeEEEEECCHHHHHHHHHHHHHcC-Cc--EEEEEC
Confidence            344444444455444 46789999999997 666778887   46699999999999999999999888 43  999999


Q ss_pred             cccchhhcCCCcceeehhhhccCChhHHHHHHHHHHhhccCCcEEEEee
Q 042119          192 DIMEVKEQLGEYDCIFLAALVGMSKEEKLTILGHIRKYMKDGGILLVRS  240 (286)
Q Consensus       192 D~~~~~~~l~~fD~V~~aalvg~~~~~k~~vl~~l~~~l~pgg~lv~r~  240 (286)
                      |+.+.. ..+.||+|+.....    .....++..+.+.|+|||.+++..
T Consensus       175 d~~~~~-~~~~fD~Vv~n~~~----~~~~~~l~~~~~~LkpgG~lils~  218 (254)
T 2nxc_A          175 SLEAAL-PFGPFDLLVANLYA----ELHAALAPRYREALVPGGRALLTG  218 (254)
T ss_dssp             CHHHHG-GGCCEEEEEEECCH----HHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred             ChhhcC-cCCCCCEEEECCcH----HHHHHHHHHHHHHcCCCCEEEEEe
Confidence            987632 23579999965332    456689999999999999999864

>1xj5_A Spermidine synthase 1; structural genomics, protein structure initiative, CESG, AT1G23820, putrescine aminopropyl transferase, SPDS1; 2.70A {Arabidopsis thaliana} SCOP: c.66.1.17 PDB: 2q41_A

Probab=99.40  E-value=1.3e-12  Score=122.22  Aligned_cols=110  Identities=18%  Similarity=0.380  Sum_probs=86.7

Q ss_pred             CCCCCEEEEeccCCChhhHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhc--CCC-CCCeEEEEccccchhhcC--CC
Q 042119          128 VVQPKKVAFVGSGPMPLTSIIMAKHHLTSTHFDNFDIDEAANDVARSIVASD--AEF-EGRMKFLTRDIMEVKEQL--GE  202 (286)
Q Consensus       128 ~~~~~~VL~IG~G~lp~tai~lA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~--g~l-~~~i~f~~~D~~~~~~~l--~~  202 (286)
                      ...+++||+||||. |..+..+++ +.++.+|+++|+|+++++.|++.+...  | + ..+++++++|+.+.....  +.
T Consensus       118 ~~~~~~VLdIG~G~-G~~a~~la~-~~~~~~V~~VDis~~~l~~Ar~~~~~~~~g-l~~~rv~~~~~D~~~~l~~~~~~~  194 (334)
T 1xj5_A          118 IPNPKKVLVIGGGD-GGVLREVAR-HASIEQIDMCEIDKMVVDVSKQFFPDVAIG-YEDPRVNLVIGDGVAFLKNAAEGS  194 (334)
T ss_dssp             SSCCCEEEEETCSS-SHHHHHHTT-CTTCCEEEEEESCHHHHHHHHHHCHHHHGG-GGSTTEEEEESCHHHHHHTSCTTC
T ss_pred             CCCCCEEEEECCCc-cHHHHHHHH-cCCCCEEEEEECCHHHHHHHHHHHHhhccc-cCCCcEEEEECCHHHHHHhccCCC
Confidence            35779999999995 777788887 456789999999999999999998753  4 3 368999999998764432  47


Q ss_pred             cceeehhhhccCChhH---HHHHHHHHHhhccCCcEEEEee
Q 042119          203 YDCIFLAALVGMSKEE---KLTILGHIRKYMKDGGILLVRS  240 (286)
Q Consensus       203 fD~V~~aalvg~~~~~---k~~vl~~l~~~l~pgg~lv~r~  240 (286)
                      ||+|+.+..-......   ..++++.+.+.|+|||++++..
T Consensus       195 fDlIi~d~~~p~~~~~~l~~~~~l~~~~~~LkpgG~lv~~~  235 (334)
T 1xj5_A          195 YDAVIVDSSDPIGPAKELFEKPFFQSVARALRPGGVVCTQA  235 (334)
T ss_dssp             EEEEEECCCCTTSGGGGGGSHHHHHHHHHHEEEEEEEEEEC
T ss_pred             ccEEEECCCCccCcchhhhHHHHHHHHHHhcCCCcEEEEec
Confidence            9999976542111112   4689999999999999999974

>2bm8_A Cephalosporin hydroxylase CMCI; cephamycin biosynthesis; 2.5A {Streptomyces clavuligerus} SCOP: c.66.1.50 PDB: 2bm9_A* 2br5_A* 2br4_A* 2br3_A*

Probab=99.40  E-value=3.3e-13  Score=119.74  Aligned_cols=100  Identities=9%  Similarity=0.128  Sum_probs=79.7

Q ss_pred             CCCCEEEEeccCCChhhHHHHHhh---cCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEccccch---hhcCC-
Q 042119          129 VQPKKVAFVGSGPMPLTSIIMAKH---HLTSTHFDNFDIDEAANDVARSIVASDAEFEGRMKFLTRDIMEV---KEQLG-  201 (286)
Q Consensus       129 ~~~~~VL~IG~G~lp~tai~lA~~---~~~g~~V~~iDid~~ai~~Ar~~~~~~g~l~~~i~f~~~D~~~~---~~~l~-  201 (286)
                      .++.+|||||||+ |..++.+|+.   ..++++|++||+|+++++.|+      + +.++++|+++|+.+.   +...+ 
T Consensus        80 ~~~~~VLDiG~Gt-G~~t~~la~~~~~~~~~~~V~gvD~s~~~l~~a~------~-~~~~v~~~~gD~~~~~~l~~~~~~  151 (236)
T 2bm8_A           80 LRPRTIVELGVYN-GGSLAWFRDLTKIMGIDCQVIGIDRDLSRCQIPA------S-DMENITLHQGDCSDLTTFEHLREM  151 (236)
T ss_dssp             HCCSEEEEECCTT-SHHHHHHHHHHHHTTCCCEEEEEESCCTTCCCCG------G-GCTTEEEEECCSSCSGGGGGGSSS
T ss_pred             cCCCEEEEEeCCC-CHHHHHHHHhhhhcCCCCEEEEEeCChHHHHHHh------c-cCCceEEEECcchhHHHHHhhccC
Confidence            3578999999996 6777888873   257899999999999999887      2 346899999999874   32223 


Q ss_pred             CcceeehhhhccCChhHHHHHHHHHHh-hccCCcEEEEee
Q 042119          202 EYDCIFLAALVGMSKEEKLTILGHIRK-YMKDGGILLVRS  240 (286)
Q Consensus       202 ~fD~V~~aalvg~~~~~k~~vl~~l~~-~l~pgg~lv~r~  240 (286)
                      .||+|++++..    .+..+++.++.+ .|||||++++.+
T Consensus       152 ~fD~I~~d~~~----~~~~~~l~~~~r~~LkpGG~lv~~d  187 (236)
T 2bm8_A          152 AHPLIFIDNAH----ANTFNIMKWAVDHLLEEGDYFIIED  187 (236)
T ss_dssp             CSSEEEEESSC----SSHHHHHHHHHHHTCCTTCEEEECS
T ss_pred             CCCEEEECCch----HhHHHHHHHHHHhhCCCCCEEEEEe
Confidence            69999976543    255679999997 999999999965

>3l8d_A Methyltransferase; structural genomics, PSI, nysgrc, protein structure initiative, NEW YORK SGX research center for STRU genomics; 1.70A {Bacillus thuringiensis}

Probab=99.39  E-value=8.8e-13  Score=115.01  Aligned_cols=102  Identities=18%  Similarity=0.238  Sum_probs=84.4

Q ss_pred             CCCCEEEEeccCCChhhHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEccccchhhcCCCcceeeh
Q 042119          129 VQPKKVAFVGSGPMPLTSIIMAKHHLTSTHFDNFDIDEAANDVARSIVASDAEFEGRMKFLTRDIMEVKEQLGEYDCIFL  208 (286)
Q Consensus       129 ~~~~~VL~IG~G~lp~tai~lA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~g~l~~~i~f~~~D~~~~~~~l~~fD~V~~  208 (286)
                      .++.+|||||||+ |..+..+++   .|++|+|+|+|+++++.|++..   .  ..+++|+++|+.+++...+.||+|+.
T Consensus        52 ~~~~~vLDiG~G~-G~~~~~l~~---~~~~v~~vD~s~~~~~~a~~~~---~--~~~~~~~~~d~~~~~~~~~~fD~v~~  122 (242)
T 3l8d_A           52 KKEAEVLDVGCGD-GYGTYKLSR---TGYKAVGVDISEVMIQKGKERG---E--GPDLSFIKGDLSSLPFENEQFEAIMA  122 (242)
T ss_dssp             CTTCEEEEETCTT-SHHHHHHHH---TTCEEEEEESCHHHHHHHHTTT---C--BTTEEEEECBTTBCSSCTTCEEEEEE
T ss_pred             CCCCeEEEEcCCC-CHHHHHHHH---cCCeEEEEECCHHHHHHHHhhc---c--cCCceEEEcchhcCCCCCCCccEEEE
Confidence            5788999999996 666778887   4889999999999999999873   2  36899999999887765568999997


Q ss_pred             hhhccCChhHHHHHHHHHHhhccCCcEEEEee
Q 042119          209 AALVGMSKEEKLTILGHIRKYMKDGGILLVRS  240 (286)
Q Consensus       209 aalvg~~~~~k~~vl~~l~~~l~pgg~lv~r~  240 (286)
                      ...+. +.++..++++++.+.|+|||.+++..
T Consensus       123 ~~~l~-~~~~~~~~l~~~~~~L~pgG~l~i~~  153 (242)
T 3l8d_A          123 INSLE-WTEEPLRALNEIKRVLKSDGYACIAI  153 (242)
T ss_dssp             ESCTT-SSSCHHHHHHHHHHHEEEEEEEEEEE
T ss_pred             cChHh-hccCHHHHHHHHHHHhCCCeEEEEEE
Confidence            65443 23566789999999999999999975

>3dli_A Methyltransferase; PSI-II, NYSGXRC, structural genomics, protein structure initiative; 2.46A {Archaeoglobus fulgidus}

Probab=99.39  E-value=3.8e-13  Score=118.06  Aligned_cols=99  Identities=15%  Similarity=0.156  Sum_probs=80.0

Q ss_pred             CCCCEEEEeccCCChhhHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEccccchh--hcCCCccee
Q 042119          129 VQPKKVAFVGSGPMPLTSIIMAKHHLTSTHFDNFDIDEAANDVARSIVASDAEFEGRMKFLTRDIMEVK--EQLGEYDCI  206 (286)
Q Consensus       129 ~~~~~VL~IG~G~lp~tai~lA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~g~l~~~i~f~~~D~~~~~--~~l~~fD~V  206 (286)
                      +++.+|||||||+ |..+..+++   .|++|+|+|+|+++++.|++.          ++++++|+.+..  ...+.||+|
T Consensus        40 ~~~~~vLDiGcG~-G~~~~~l~~---~~~~v~gvD~s~~~~~~a~~~----------~~~~~~d~~~~~~~~~~~~fD~i  105 (240)
T 3dli_A           40 KGCRRVLDIGCGR-GEFLELCKE---EGIESIGVDINEDMIKFCEGK----------FNVVKSDAIEYLKSLPDKYLDGV  105 (240)
T ss_dssp             TTCSCEEEETCTT-THHHHHHHH---HTCCEEEECSCHHHHHHHHTT----------SEEECSCHHHHHHTSCTTCBSEE
T ss_pred             cCCCeEEEEeCCC-CHHHHHHHh---CCCcEEEEECCHHHHHHHHhh----------cceeeccHHHHhhhcCCCCeeEE
Confidence            5779999999997 555677887   478999999999999998875          689999998763  233579999


Q ss_pred             ehhhhc-cCChhHHHHHHHHHHhhccCCcEEEEeec
Q 042119          207 FLAALV-GMSKEEKLTILGHIRKYMKDGGILLVRSA  241 (286)
Q Consensus       207 ~~aalv-g~~~~~k~~vl~~l~~~l~pgg~lv~r~~  241 (286)
                      +....+ .++.++...+++++.+.|||||.+++...
T Consensus       106 ~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~  141 (240)
T 3dli_A          106 MISHFVEHLDPERLFELLSLCYSKMKYSSYIVIESP  141 (240)
T ss_dssp             EEESCGGGSCGGGHHHHHHHHHHHBCTTCCEEEEEE
T ss_pred             EECCchhhCCcHHHHHHHHHHHHHcCCCcEEEEEeC
Confidence            976544 44545668999999999999999999763

>2fpo_A Methylase YHHF; structural genomics, putative methyltransferase, PSI, protei structure initiative; HET: MSE; 2.05A {Escherichia coli} SCOP: c.66.1.46

Probab=99.39  E-value=1.3e-12  Score=112.63  Aligned_cols=105  Identities=10%  Similarity=0.098  Sum_probs=81.4

Q ss_pred             CCCEEEEeccCCChhhHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEccccchhh-cCCCcceeeh
Q 042119          130 QPKKVAFVGSGPMPLTSIIMAKHHLTSTHFDNFDIDEAANDVARSIVASDAEFEGRMKFLTRDIMEVKE-QLGEYDCIFL  208 (286)
Q Consensus       130 ~~~~VL~IG~G~lp~tai~lA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~g~l~~~i~f~~~D~~~~~~-~l~~fD~V~~  208 (286)
                      ++.+|||+|||+ |..++.++++  ...+|+++|+|+++++.|++.++..| + ++++|+++|+.+... ..+.||+|+.
T Consensus        54 ~~~~vLDlgcG~-G~~~~~l~~~--~~~~V~~vD~s~~~l~~a~~~~~~~~-~-~~v~~~~~D~~~~~~~~~~~fD~V~~  128 (202)
T 2fpo_A           54 VDAQCLDCFAGS-GALGLEALSR--YAAGATLIEMDRAVSQQLIKNLATLK-A-GNARVVNSNAMSFLAQKGTPHNIVFV  128 (202)
T ss_dssp             TTCEEEETTCTT-CHHHHHHHHT--TCSEEEEECSCHHHHHHHHHHHHHTT-C-CSEEEECSCHHHHHSSCCCCEEEEEE
T ss_pred             CCCeEEEeCCCc-CHHHHHHHhc--CCCEEEEEECCHHHHHHHHHHHHHcC-C-CcEEEEECCHHHHHhhcCCCCCEEEE
Confidence            578999999997 5555655551  23599999999999999999999998 4 789999999987443 2347999997


Q ss_pred             hhhccCChhHHHHHHHHHHh--hccCCcEEEEeec
Q 042119          209 AALVGMSKEEKLTILGHIRK--YMKDGGILLVRSA  241 (286)
Q Consensus       209 aalvg~~~~~k~~vl~~l~~--~l~pgg~lv~r~~  241 (286)
                      +....  .....++++.+.+  .|+|||++++...
T Consensus       129 ~~p~~--~~~~~~~l~~l~~~~~L~pgG~l~i~~~  161 (202)
T 2fpo_A          129 DPPFR--RGLLEETINLLEDNGWLADEALIYVESE  161 (202)
T ss_dssp             CCSSS--TTTHHHHHHHHHHTTCEEEEEEEEEEEE
T ss_pred             CCCCC--CCcHHHHHHHHHhcCccCCCcEEEEEEC
Confidence            64311  2455678888876  4999999988753

>1qzz_A RDMB, aclacinomycin-10-hydroxylase; anthracycline, methyltransferase, polyketide, tailoring enzymes, structural proteomics in E spine; HET: SAM; 2.10A {Streptomyces purpurascens} SCOP: a.4.5.29 c.66.1.12 PDB: 1r00_A* 1xds_A* 1xdu_A*

Probab=99.39  E-value=2.9e-12  Score=119.67  Aligned_cols=111  Identities=21%  Similarity=0.212  Sum_probs=89.3

Q ss_pred             hcCCCCCCEEEEeccCCChhhHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEccccchhhcCCCcc
Q 042119          125 ENGVVQPKKVAFVGSGPMPLTSIIMAKHHLTSTHFDNFDIDEAANDVARSIVASDAEFEGRMKFLTRDIMEVKEQLGEYD  204 (286)
Q Consensus       125 ~~~~~~~~~VL~IG~G~lp~tai~lA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~g~l~~~i~f~~~D~~~~~~~l~~fD  204 (286)
                      .....++.+|||||||+ |..++.+++ ..++.+++++|+ +++++.|++.+...| +.++++|+++|..+ ..+ ..||
T Consensus       177 ~~~~~~~~~vlDvG~G~-G~~~~~l~~-~~~~~~~~~~D~-~~~~~~a~~~~~~~~-~~~~v~~~~~d~~~-~~~-~~~D  250 (374)
T 1qzz_A          177 AYDWSAVRHVLDVGGGN-GGMLAAIAL-RAPHLRGTLVEL-AGPAERARRRFADAG-LADRVTVAEGDFFK-PLP-VTAD  250 (374)
T ss_dssp             TSCCTTCCEEEEETCTT-SHHHHHHHH-HCTTCEEEEEEC-HHHHHHHHHHHHHTT-CTTTEEEEECCTTS-CCS-CCEE
T ss_pred             hCCCCCCCEEEEECCCc-CHHHHHHHH-HCCCCEEEEEeC-HHHHHHHHHHHHhcC-CCCceEEEeCCCCC-cCC-CCCC
Confidence            33456789999999997 566677777 368899999999 999999999999998 67799999999865 222 2499


Q ss_pred             eeehhhhc-cCChhHHHHHHHHHHhhccCCcEEEEeec
Q 042119          205 CIFLAALV-GMSKEEKLTILGHIRKYMKDGGILLVRSA  241 (286)
Q Consensus       205 ~V~~aalv-g~~~~~k~~vl~~l~~~l~pgg~lv~r~~  241 (286)
                      +|+....+ .++.+...++++++.+.|+|||.+++.+.
T Consensus       251 ~v~~~~vl~~~~~~~~~~~l~~~~~~L~pgG~l~i~e~  288 (374)
T 1qzz_A          251 VVLLSFVLLNWSDEDALTILRGCVRALEPGGRLLVLDR  288 (374)
T ss_dssp             EEEEESCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEC
T ss_pred             EEEEeccccCCCHHHHHHHHHHHHHhcCCCcEEEEEec
Confidence            99876544 45555667899999999999998887654

>1yb2_A Hypothetical protein TA0852; structural genomics, methyltransferase, thermoplasma acidoph midwest center for structural genomics, MCSG; 2.01A {Thermoplasma acidophilum} SCOP: c.66.1.13

Probab=99.39  E-value=8.2e-13  Score=119.10  Aligned_cols=106  Identities=16%  Similarity=0.107  Sum_probs=85.7

Q ss_pred             cCCCCCCEEEEeccCCChhhHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhc-CCCCCCeEEEEccccchhhcCCCcc
Q 042119          126 NGVVQPKKVAFVGSGPMPLTSIIMAKHHLTSTHFDNFDIDEAANDVARSIVASD-AEFEGRMKFLTRDIMEVKEQLGEYD  204 (286)
Q Consensus       126 ~~~~~~~~VL~IG~G~lp~tai~lA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~-g~l~~~i~f~~~D~~~~~~~l~~fD  204 (286)
                      ....++.+|||+|||+ |..++.+++...++.+|+++|+++++++.|++.++.. |.  ++++|+++|+.+ ..+.+.||
T Consensus       106 ~~~~~~~~VLD~G~G~-G~~~~~la~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~g~--~~v~~~~~d~~~-~~~~~~fD  181 (275)
T 1yb2_A          106 CGLRPGMDILEVGVGS-GNMSSYILYALNGKGTLTVVERDEDNLKKAMDNLSEFYDI--GNVRTSRSDIAD-FISDQMYD  181 (275)
T ss_dssp             CCCCTTCEEEEECCTT-SHHHHHHHHHHTTSSEEEEECSCHHHHHHHHHHHHTTSCC--TTEEEECSCTTT-CCCSCCEE
T ss_pred             cCCCCcCEEEEecCCC-CHHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHhcCCC--CcEEEEECchhc-cCcCCCcc
Confidence            3457889999999997 5555677763357899999999999999999999988 73  689999999976 32335799


Q ss_pred             eeehhhhccCChhHHHHHHHHHHhhccCCcEEEEeec
Q 042119          205 CIFLAALVGMSKEEKLTILGHIRKYMKDGGILLVRSA  241 (286)
Q Consensus       205 ~V~~aalvg~~~~~k~~vl~~l~~~l~pgg~lv~r~~  241 (286)
                      +|+.+.      ++..++++++.+.|+|||.+++...
T Consensus       182 ~Vi~~~------~~~~~~l~~~~~~LkpgG~l~i~~~  212 (275)
T 1yb2_A          182 AVIADI------PDPWNHVQKIASMMKPGSVATFYLP  212 (275)
T ss_dssp             EEEECC------SCGGGSHHHHHHTEEEEEEEEEEES
T ss_pred             EEEEcC------cCHHHHHHHHHHHcCCCCEEEEEeC
Confidence            999631      3445799999999999999998763

>1u2z_A Histone-lysine N-methyltransferase, H3 lysine-79 specific; histone methyltransferase, nucleosome; HET: SAH; 2.20A {Saccharomyces cerevisiae} SCOP: c.66.1.31

Probab=99.38  E-value=1.3e-11  Score=119.38  Aligned_cols=113  Identities=13%  Similarity=0.125  Sum_probs=87.3

Q ss_pred             HHhcCCCCCCEEEEeccCCChhhHHHHHhhcCCCcEEEEEeCChHHHHHH-------HHHHHhcCCCC-CCeEEEEcccc
Q 042119          123 LSENGVVQPKKVAFVGSGPMPLTSIIMAKHHLTSTHFDNFDIDEAANDVA-------RSIVASDAEFE-GRMKFLTRDIM  194 (286)
Q Consensus       123 l~~~~~~~~~~VL~IG~G~lp~tai~lA~~~~~g~~V~~iDid~~ai~~A-------r~~~~~~g~l~-~~i~f~~~D~~  194 (286)
                      +....+.++.+|||||||+ |..++.+|+. .+..+|+|||+++++++.|       ++.++..| +. .+++|+++|..
T Consensus       235 l~~l~l~~g~~VLDLGCGs-G~la~~LA~~-~g~~~V~GVDis~~~l~~A~~Ml~~ar~~~~~~G-l~~~nV~~i~gD~~  311 (433)
T 1u2z_A          235 YQQCQLKKGDTFMDLGSGV-GNCVVQAALE-CGCALSFGCEIMDDASDLTILQYEELKKRCKLYG-MRLNNVEFSLKKSF  311 (433)
T ss_dssp             HHHTTCCTTCEEEEESCTT-SHHHHHHHHH-HCCSEEEEEECCHHHHHHHHHHHHHHHHHHHHTT-BCCCCEEEEESSCS
T ss_pred             HHhcCCCCCCEEEEeCCCc-CHHHHHHHHH-CCCCEEEEEeCCHHHHHHHHHhHHHHHHHHHHcC-CCCCceEEEEcCcc
Confidence            3344668899999999996 6677788873 3446899999999999999       88888888 54 78999998765


Q ss_pred             ch----hhcCCCcceeehhhhccCChhHHHHHHHHHHhhccCCcEEEEee
Q 042119          195 EV----KEQLGEYDCIFLAALVGMSKEEKLTILGHIRKYMKDGGILLVRS  240 (286)
Q Consensus       195 ~~----~~~l~~fD~V~~aalvg~~~~~k~~vl~~l~~~l~pgg~lv~r~  240 (286)
                      ..    ....+.||+|++.... +. ++...+|.++.+.|||||++++..
T Consensus       312 ~~~~~~~~~~~~FDvIvvn~~l-~~-~d~~~~L~el~r~LKpGG~lVi~d  359 (433)
T 1u2z_A          312 VDNNRVAELIPQCDVILVNNFL-FD-EDLNKKVEKILQTAKVGCKIISLK  359 (433)
T ss_dssp             TTCHHHHHHGGGCSEEEECCTT-CC-HHHHHHHHHHHTTCCTTCEEEESS
T ss_pred             ccccccccccCCCCEEEEeCcc-cc-ccHHHHHHHHHHhCCCCeEEEEee
Confidence            31    1123579999964332 22 566678999999999999999974

>1fbn_A MJ fibrillarin homologue; MJ proteins, ribosomal RNA processing, snoRNP, structural genomics, BSGC structure funded by NIH; 1.60A {Methanocaldococcus jannaschii} SCOP: c.66.1.3 PDB: 1g8s_A

Probab=99.38  E-value=6.6e-13  Score=116.41  Aligned_cols=105  Identities=11%  Similarity=0.131  Sum_probs=82.1

Q ss_pred             hcCCCCCCEEEEeccCCChhhHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEccccc----hhhcC
Q 042119          125 ENGVVQPKKVAFVGSGPMPLTSIIMAKHHLTSTHFDNFDIDEAANDVARSIVASDAEFEGRMKFLTRDIME----VKEQL  200 (286)
Q Consensus       125 ~~~~~~~~~VL~IG~G~lp~tai~lA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~g~l~~~i~f~~~D~~~----~~~~l  200 (286)
                      .....++.+|||||||+ |..+..+|+. .+..+|+++|+|+++++.|++.++..    .+++++++|+.+    .+.. 
T Consensus        69 ~~~~~~~~~VLDlGcG~-G~~~~~la~~-~~~~~v~gvD~s~~~~~~a~~~~~~~----~~v~~~~~d~~~~~~~~~~~-  141 (230)
T 1fbn_A           69 VMPIKRDSKILYLGASA-GTTPSHVADI-ADKGIVYAIEYAPRIMRELLDACAER----ENIIPILGDANKPQEYANIV-  141 (230)
T ss_dssp             CCCCCTTCEEEEESCCS-SHHHHHHHHH-TTTSEEEEEESCHHHHHHHHHHTTTC----TTEEEEECCTTCGGGGTTTS-
T ss_pred             ccCCCCCCEEEEEcccC-CHHHHHHHHH-cCCcEEEEEECCHHHHHHHHHHhhcC----CCeEEEECCCCCcccccccC-
Confidence            33457889999999997 6777888873 44689999999999999999985543    589999999977    4433 


Q ss_pred             CCcceeehhhhccCChhHHHHHHHHHHhhccCCcEEEEe
Q 042119          201 GEYDCIFLAALVGMSKEEKLTILGHIRKYMKDGGILLVR  239 (286)
Q Consensus       201 ~~fD~V~~aalvg~~~~~k~~vl~~l~~~l~pgg~lv~r  239 (286)
                      ..||+|+.+  +. +......+++++.+.|+|||.+++.
T Consensus       142 ~~~D~v~~~--~~-~~~~~~~~l~~~~~~LkpgG~l~i~  177 (230)
T 1fbn_A          142 EKVDVIYED--VA-QPNQAEILIKNAKWFLKKGGYGMIA  177 (230)
T ss_dssp             CCEEEEEEC--CC-STTHHHHHHHHHHHHEEEEEEEEEE
T ss_pred             ccEEEEEEe--cC-ChhHHHHHHHHHHHhCCCCcEEEEE
Confidence            579999932  21 2233467899999999999999885

>2pwy_A TRNA (adenine-N(1)-)-methyltransferase; mtase, adoMet, TRMI, tRNA-M1A58; HET: SAH; 1.70A {Thermus thermophilus}

Probab=99.38  E-value=1.6e-12  Score=114.68  Aligned_cols=108  Identities=14%  Similarity=0.119  Sum_probs=87.8

Q ss_pred             hcCCCCCCEEEEeccCCChhhHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhc-CCCCCCeEEEEccccchhhcCCCc
Q 042119          125 ENGVVQPKKVAFVGSGPMPLTSIIMAKHHLTSTHFDNFDIDEAANDVARSIVASD-AEFEGRMKFLTRDIMEVKEQLGEY  203 (286)
Q Consensus       125 ~~~~~~~~~VL~IG~G~lp~tai~lA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~-g~l~~~i~f~~~D~~~~~~~l~~f  203 (286)
                      .....++.+||++|||+ |..++.+++...++.+|+++|+++++++.|++.++.. |.  ++++++++|+.+.+.+.+.|
T Consensus        91 ~~~~~~~~~vLdiG~G~-G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~g~--~~v~~~~~d~~~~~~~~~~~  167 (258)
T 2pwy_A           91 LLDLAPGMRVLEAGTGS-GGLTLFLARAVGEKGLVESYEARPHHLAQAERNVRAFWQV--ENVRFHLGKLEEAELEEAAY  167 (258)
T ss_dssp             HTTCCTTCEEEEECCTT-SHHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHHCCC--CCEEEEESCGGGCCCCTTCE
T ss_pred             HcCCCCCCEEEEECCCc-CHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHhcCC--CCEEEEECchhhcCCCCCCc
Confidence            34567889999999997 6666777773356899999999999999999999887 73  68999999998763333579


Q ss_pred             ceeehhhhccCChhHHHHHHHHHHhhccCCcEEEEeec
Q 042119          204 DCIFLAALVGMSKEEKLTILGHIRKYMKDGGILLVRSA  241 (286)
Q Consensus       204 D~V~~aalvg~~~~~k~~vl~~l~~~l~pgg~lv~r~~  241 (286)
                      |+|+.+.      ++...+++++.+.|+|||.+++-..
T Consensus       168 D~v~~~~------~~~~~~l~~~~~~L~~gG~l~~~~~  199 (258)
T 2pwy_A          168 DGVALDL------MEPWKVLEKAALALKPDRFLVAYLP  199 (258)
T ss_dssp             EEEEEES------SCGGGGHHHHHHHEEEEEEEEEEES
T ss_pred             CEEEECC------cCHHHHHHHHHHhCCCCCEEEEEeC
Confidence            9999742      3444799999999999999998763

>2ozv_A Hypothetical protein ATU0636; structural genomics, predicted transferase, predicted O-methyltransferase, PFAM PF05175; HET: MSE; 1.70A {Agrobacterium tumefaciens str}

Probab=99.38  E-value=1.8e-12  Score=116.43  Aligned_cols=110  Identities=16%  Similarity=0.225  Sum_probs=85.9

Q ss_pred             CCCCCEEEEeccCCChhhHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHh---cCCCCCCeEEEEccccchhh------
Q 042119          128 VVQPKKVAFVGSGPMPLTSIIMAKHHLTSTHFDNFDIDEAANDVARSIVAS---DAEFEGRMKFLTRDIMEVKE------  198 (286)
Q Consensus       128 ~~~~~~VL~IG~G~lp~tai~lA~~~~~g~~V~~iDid~~ai~~Ar~~~~~---~g~l~~~i~f~~~D~~~~~~------  198 (286)
                      ..++.+|||+|||+ |..++.+|+ ..++.+|+++|+|+++++.|++++..   .| +.++++++++|+.+...      
T Consensus        34 ~~~~~~VLDlG~G~-G~~~l~la~-~~~~~~v~gvDi~~~~~~~a~~n~~~~~~~~-l~~~v~~~~~D~~~~~~~~~~~~  110 (260)
T 2ozv_A           34 DDRACRIADLGAGA-GAAGMAVAA-RLEKAEVTLYERSQEMAEFARRSLELPDNAA-FSARIEVLEADVTLRAKARVEAG  110 (260)
T ss_dssp             CCSCEEEEECCSSS-SHHHHHHHH-HCTTEEEEEEESSHHHHHHHHHHTTSGGGTT-TGGGEEEEECCTTCCHHHHHHTT
T ss_pred             ccCCCEEEEeCChH-hHHHHHHHH-hCCCCeEEEEECCHHHHHHHHHHHHhhhhCC-CcceEEEEeCCHHHHhhhhhhhc
Confidence            46778999999997 666677887 36789999999999999999999988   88 67789999999987632      


Q ss_pred             -cCCCcceeehhhh-c----------------cCChhHHHHHHHHHHhhccCCcEEEEee
Q 042119          199 -QLGEYDCIFLAAL-V----------------GMSKEEKLTILGHIRKYMKDGGILLVRS  240 (286)
Q Consensus       199 -~l~~fD~V~~aal-v----------------g~~~~~k~~vl~~l~~~l~pgg~lv~r~  240 (286)
                       ..+.||+|+..-- .                .........+++.+.+.|+|||.+++-.
T Consensus       111 ~~~~~fD~Vv~nPPy~~~~~~~~~~~~~~~a~~~~~~~~~~~l~~~~~~LkpgG~l~~~~  170 (260)
T 2ozv_A          111 LPDEHFHHVIMNPPYNDAGDRRTPDALKAEAHAMTEGLFEDWIRTASAIMVSGGQLSLIS  170 (260)
T ss_dssp             CCTTCEEEEEECCCC---------------------CCHHHHHHHHHHHEEEEEEEEEEE
T ss_pred             cCCCCcCEEEECCCCcCCCCCCCcCHHHHHHhhcCcCCHHHHHHHHHHHcCCCCEEEEEE
Confidence             2357999987510 0                0111235679999999999999998754

>3gdh_A Trimethylguanosine synthase homolog; M7G, CAP, dimethyltransferase, usnRNA, snoRNA, telomerase, cytoplasm, methyltransferase, nucleus; HET: MGP SAH; 2.00A {Homo sapiens} PDB: 3egi_A*

Probab=99.38  E-value=8.9e-14  Score=122.03  Aligned_cols=105  Identities=20%  Similarity=0.191  Sum_probs=85.2

Q ss_pred             CCCCEEEEeccCCChhhHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEccccchhhcCCCcceeeh
Q 042119          129 VQPKKVAFVGSGPMPLTSIIMAKHHLTSTHFDNFDIDEAANDVARSIVASDAEFEGRMKFLTRDIMEVKEQLGEYDCIFL  208 (286)
Q Consensus       129 ~~~~~VL~IG~G~lp~tai~lA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~g~l~~~i~f~~~D~~~~~~~l~~fD~V~~  208 (286)
                      .++.+|||+|||+ |..++.+|+   .|.+|+|+|+|+.+++.|++.++..| +.++++|+++|+.+.+. ...||+|+.
T Consensus        77 ~~~~~vLD~gcG~-G~~~~~la~---~~~~v~~vD~s~~~~~~a~~~~~~~~-~~~~~~~~~~d~~~~~~-~~~~D~v~~  150 (241)
T 3gdh_A           77 FKCDVVVDAFCGV-GGNTIQFAL---TGMRVIAIDIDPVKIALARNNAEVYG-IADKIEFICGDFLLLAS-FLKADVVFL  150 (241)
T ss_dssp             SCCSEEEETTCTT-SHHHHHHHH---TTCEEEEEESCHHHHHHHHHHHHHTT-CGGGEEEEESCHHHHGG-GCCCSEEEE
T ss_pred             cCCCEEEECcccc-CHHHHHHHH---cCCEEEEEECCHHHHHHHHHHHHHcC-CCcCeEEEECChHHhcc-cCCCCEEEE
Confidence            3789999999997 566778887   57999999999999999999999999 66789999999988763 358999997


Q ss_pred             hhhccCChhHHHHHHHHHHhhccCCcEEEEee
Q 042119          209 AALVGMSKEEKLTILGHIRKYMKDGGILLVRS  240 (286)
Q Consensus       209 aalvg~~~~~k~~vl~~l~~~l~pgg~lv~r~  240 (286)
                      ....+. .......+.++.+.|+|||.+++..
T Consensus       151 ~~~~~~-~~~~~~~~~~~~~~L~pgG~~i~~~  181 (241)
T 3gdh_A          151 SPPWGG-PDYATAETFDIRTMMSPDGFEIFRL  181 (241)
T ss_dssp             CCCCSS-GGGGGSSSBCTTTSCSSCHHHHHHH
T ss_pred             CCCcCC-cchhhhHHHHHHhhcCCcceeHHHH
Confidence            643322 2333346778999999999988764

>2pbf_A Protein-L-isoaspartate O-methyltransferase beta-A methyltransferase; protein repair, isoaspartyl formation, P. falciparum; HET: SAH; 2.00A {Plasmodium falciparum}

Probab=99.38  E-value=9e-13  Score=114.58  Aligned_cols=106  Identities=16%  Similarity=0.232  Sum_probs=85.0

Q ss_pred             CCCCCCEEEEeccCCChhhHHHHHhhcC----CCcEEEEEeCChHHHHHHHHHHHhcCCC----CCCeEEEEccccchh-
Q 042119          127 GVVQPKKVAFVGSGPMPLTSIIMAKHHL----TSTHFDNFDIDEAANDVARSIVASDAEF----EGRMKFLTRDIMEVK-  197 (286)
Q Consensus       127 ~~~~~~~VL~IG~G~lp~tai~lA~~~~----~g~~V~~iDid~~ai~~Ar~~~~~~g~l----~~~i~f~~~D~~~~~-  197 (286)
                      .+.++.+||+||||+ |..+..+++...    ++++|+++|+|+++++.|++.++..| +    ..+++|+++|+.+.. 
T Consensus        77 ~~~~~~~VLdiG~G~-G~~~~~la~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~-~~~~~~~~v~~~~~d~~~~~~  154 (227)
T 2pbf_A           77 VLKPGSRAIDVGSGS-GYLTVCMAIKMNVLENKNSYVIGLERVKDLVNFSLENIKRDK-PELLKIDNFKIIHKNIYQVNE  154 (227)
T ss_dssp             TSCTTCEEEEESCTT-SHHHHHHHHHTTTTTCTTCEEEEEESCHHHHHHHHHHHHHHC-GGGGSSTTEEEEECCGGGCCH
T ss_pred             hCCCCCEEEEECCCC-CHHHHHHHHHhcccCCCCCEEEEEeCCHHHHHHHHHHHHHcC-ccccccCCEEEEECChHhccc
Confidence            357789999999997 666777887422    45799999999999999999999887 3    368999999997743 


Q ss_pred             ---hcCCCcceeehhhhccCChhHHHHHHHHHHhhccCCcEEEEeec
Q 042119          198 ---EQLGEYDCIFLAALVGMSKEEKLTILGHIRKYMKDGGILLVRSA  241 (286)
Q Consensus       198 ---~~l~~fD~V~~aalvg~~~~~k~~vl~~l~~~l~pgg~lv~r~~  241 (286)
                         ...+.||+|+......       .+++++.+.|+|||++++-..
T Consensus       155 ~~~~~~~~fD~I~~~~~~~-------~~~~~~~~~LkpgG~lv~~~~  194 (227)
T 2pbf_A          155 EEKKELGLFDAIHVGASAS-------ELPEILVDLLAENGKLIIPIE  194 (227)
T ss_dssp             HHHHHHCCEEEEEECSBBS-------SCCHHHHHHEEEEEEEEEEEE
T ss_pred             ccCccCCCcCEEEECCchH-------HHHHHHHHhcCCCcEEEEEEc
Confidence               3345799998776542       256788999999999998764

>3q7e_A Protein arginine N-methyltransferase 1; HET: SAH; 2.20A {Rattus norvegicus} PDB: 1orh_A* 1ori_A* 1or8_A*

Probab=99.38  E-value=1.4e-12  Score=122.10  Aligned_cols=106  Identities=19%  Similarity=0.241  Sum_probs=86.0

Q ss_pred             CCCCEEEEeccCCChhhHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEccccchhhcCCCcceeeh
Q 042119          129 VQPKKVAFVGSGPMPLTSIIMAKHHLTSTHFDNFDIDEAANDVARSIVASDAEFEGRMKFLTRDIMEVKEQLGEYDCIFL  208 (286)
Q Consensus       129 ~~~~~VL~IG~G~lp~tai~lA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~g~l~~~i~f~~~D~~~~~~~l~~fD~V~~  208 (286)
                      .++++|||||||+ |..++.+|++  +..+|+|+|+|+ +++.|++.++..| +.++++|+++|+.+++.+.+.||+|+.
T Consensus        65 ~~~~~VLDvGcG~-G~~~~~la~~--g~~~v~gvD~s~-~l~~a~~~~~~~~-~~~~v~~~~~d~~~~~~~~~~fD~Iis  139 (349)
T 3q7e_A           65 FKDKVVLDVGSGT-GILCMFAAKA--GARKVIGIECSS-ISDYAVKIVKANK-LDHVVTIIKGKVEEVELPVEKVDIIIS  139 (349)
T ss_dssp             HTTCEEEEESCTT-SHHHHHHHHT--TCSEEEEEECST-HHHHHHHHHHHTT-CTTTEEEEESCTTTCCCSSSCEEEEEE
T ss_pred             CCCCEEEEEeccc-hHHHHHHHHC--CCCEEEEECcHH-HHHHHHHHHHHcC-CCCcEEEEECcHHHccCCCCceEEEEE
Confidence            5789999999997 5667788872  445999999995 9999999999999 788899999999887655568999986


Q ss_pred             hhh--ccCChhHHHHHHHHHHhhccCCcEEEEe
Q 042119          209 AAL--VGMSKEEKLTILGHIRKYMKDGGILLVR  239 (286)
Q Consensus       209 aal--vg~~~~~k~~vl~~l~~~l~pgg~lv~r  239 (286)
                      ..+  .....+....++..+.+.|||||+++..
T Consensus       140 ~~~~~~l~~~~~~~~~l~~~~r~LkpgG~li~~  172 (349)
T 3q7e_A          140 EWMGYCLFYESMLNTVLHARDKWLAPDGLIFPD  172 (349)
T ss_dssp             CCCBBTBTBTCCHHHHHHHHHHHEEEEEEEESC
T ss_pred             ccccccccCchhHHHHHHHHHHhCCCCCEEccc
Confidence            431  1123356778999999999999998753

>2ipx_A RRNA 2'-O-methyltransferase fibrillarin; FBL, structural genomics, structural genomics consortium, SGC; HET: MTA; 1.82A {Homo sapiens}

Probab=99.38  E-value=2.1e-12  Score=113.14  Aligned_cols=148  Identities=9%  Similarity=0.117  Sum_probs=99.9

Q ss_pred             hcCCCCCCEEEEeccCCChhhHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEccccch---hhcCC
Q 042119          125 ENGVVQPKKVAFVGSGPMPLTSIIMAKHHLTSTHFDNFDIDEAANDVARSIVASDAEFEGRMKFLTRDIMEV---KEQLG  201 (286)
Q Consensus       125 ~~~~~~~~~VL~IG~G~lp~tai~lA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~g~l~~~i~f~~~D~~~~---~~~l~  201 (286)
                      ...+.++.+|||+|||+ |..+..+|+...++.+|+++|+|+++++.+.+.++..    .+++|+++|+.+.   +...+
T Consensus        72 ~~~~~~~~~vLDlG~G~-G~~~~~la~~~g~~~~v~gvD~s~~~i~~~~~~a~~~----~~v~~~~~d~~~~~~~~~~~~  146 (233)
T 2ipx_A           72 QIHIKPGAKVLYLGAAS-GTTVSHVSDIVGPDGLVYAVEFSHRSGRDLINLAKKR----TNIIPVIEDARHPHKYRMLIA  146 (233)
T ss_dssp             CCCCCTTCEEEEECCTT-SHHHHHHHHHHCTTCEEEEECCCHHHHHHHHHHHHHC----TTEEEECSCTTCGGGGGGGCC
T ss_pred             eecCCCCCEEEEEcccC-CHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHhhcc----CCeEEEEcccCChhhhcccCC
Confidence            34567889999999997 6667778874336789999999999999888887764    4799999999873   22335


Q ss_pred             CcceeehhhhccCChhHHHHHHHHHHhhccCCcEEEEeecCcceeee------cccCCcccc--cCcEEEEEe--cCccc
Q 042119          202 EYDCIFLAALVGMSKEEKLTILGHIRKYMKDGGILLVRSAKGARAFL------YPVVVEHDL--LDFEVLSAV--HPNDD  271 (286)
Q Consensus       202 ~fD~V~~aalvg~~~~~k~~vl~~l~~~l~pgg~lv~r~~~g~r~~l------yp~v~~~~l--~gf~~~~~~--~P~~~  271 (286)
                      .||+|+.+..   .......++.++.+.|+|||.+++........+.      |.. +...+  .||++....  .|...
T Consensus       147 ~~D~V~~~~~---~~~~~~~~~~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~-~~~~l~~~Gf~~~~~~~~~~~~~  222 (233)
T 2ipx_A          147 MVDVIFADVA---QPDQTRIVALNAHTFLRNGGHFVISIKANCIDSTASAEAVFAS-EVKKMQQENMKPQEQLTLEPYER  222 (233)
T ss_dssp             CEEEEEECCC---CTTHHHHHHHHHHHHEEEEEEEEEEEEHHHHCSSSCHHHHHHH-HHHTTGGGTEEEEEEEECTTTSS
T ss_pred             cEEEEEEcCC---CccHHHHHHHHHHHHcCCCeEEEEEEcccccccCCCHHHHHHH-HHHHHHHCCCceEEEEecCCccC
Confidence            7999997533   2234456788999999999999984321100010      110 01122  489887643  34433


Q ss_pred             ceeeeEEEeec
Q 042119          272 VINSVVLVRNS  282 (286)
Q Consensus       272 vinsvi~~r~~  282 (286)
                      - ..+++++++
T Consensus       223 ~-~~~v~~~~~  232 (233)
T 2ipx_A          223 D-HAVVVGVYR  232 (233)
T ss_dssp             S-EEEEEEEEC
T ss_pred             C-cEEEEEEeC
Confidence            2 347777775

>2g72_A Phenylethanolamine N-methyltransferase; HET: SAM F21; 2.00A {Homo sapiens} SCOP: c.66.1.15 PDB: 1yz3_A* 2an4_A* 2an5_A* 2g70_A* 2g71_A* 2an3_A* 2g8n_A* 2ony_A* 3hcb_A* 3hcc_A* 3hcd_A* 3hcf_A* 3kpj_A* 3kpu_A* 3kpv_A* 3kpw_A* 3kpy_A* 3kqm_A* 3kqo_A* 3kqp_A* ...

Probab=99.38  E-value=2.5e-12  Score=116.13  Aligned_cols=109  Identities=17%  Similarity=0.147  Sum_probs=78.3

Q ss_pred             CCCCEEEEeccCCChhhHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCC----------------CCC--------
Q 042119          129 VQPKKVAFVGSGPMPLTSIIMAKHHLTSTHFDNFDIDEAANDVARSIVASDAE----------------FEG--------  184 (286)
Q Consensus       129 ~~~~~VL~IG~G~lp~tai~lA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~g~----------------l~~--------  184 (286)
                      .++.+|||||||++. +++.+++  .++.+|+|+|+|++|++.|++.++..+.                ...        
T Consensus        70 ~~~~~vLDiGcG~G~-~~~l~~~--~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~  146 (289)
T 2g72_A           70 VSGRTLIDIGSGPTV-YQLLSAC--SHFEDITMTDFLEVNRQELGRWLQEEPGAFNWSMYSQHACLIEGKGECWQDKERQ  146 (289)
T ss_dssp             SCCSEEEEETCTTCC-GGGTTGG--GGCSEEEEECSCHHHHHHHHHHHTTCTTCCCCHHHHHHHHHHHCSCCCHHHHHHH
T ss_pred             CCCCeEEEECCCcCh-HHHHhhc--cCCCeEEEeCCCHHHHHHHHHHHhhCcccccchhhhhHHHHhcCcccchhhhHHH
Confidence            477899999999855 5555554  3578999999999999999986543210                001        


Q ss_pred             ----CeEEEEccccc-hhhc---C--CCcceeehhhhccC---ChhHHHHHHHHHHhhccCCcEEEEee
Q 042119          185 ----RMKFLTRDIME-VKEQ---L--GEYDCIFLAALVGM---SKEEKLTILGHIRKYMKDGGILLVRS  240 (286)
Q Consensus       185 ----~i~f~~~D~~~-~~~~---l--~~fD~V~~aalvg~---~~~~k~~vl~~l~~~l~pgg~lv~r~  240 (286)
                          .++++++|+.+ .+..   +  +.||+|+....+.+   +.++..+++.++.+.|||||.+++..
T Consensus       147 ~~~~~~~~~~~D~~~~~~~~~~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~~~r~LkpGG~l~~~~  215 (289)
T 2g72_A          147 LRARVKRVLPIDVHQPQPLGAGSPAPLPADALVSAFCLEAVSPDLASFQRALDHITTLLRPGGHLLLIG  215 (289)
T ss_dssp             HHHHEEEEECCCTTSSSTTCSSCSSCSSEEEEEEESCHHHHCSSHHHHHHHHHHHHTTEEEEEEEEEEE
T ss_pred             HHhhhceEEecccCCCCCccccccCCCCCCEEEehhhhhhhcCCHHHHHHHHHHHHHhcCCCCEEEEEE
Confidence                25788889876 4321   1  34999986543211   14578899999999999999999864

>1nv8_A HEMK protein; class I adoMet-dependent methyltransferase; HET: SAM MEQ; 2.20A {Thermotoga maritima} SCOP: c.66.1.30 PDB: 1nv9_A* 1vq1_A* 1sg9_A*

Probab=99.38  E-value=4.4e-12  Score=115.69  Aligned_cols=106  Identities=20%  Similarity=0.284  Sum_probs=83.6

Q ss_pred             CCCEEEEeccCCChhhHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEccccchhhcCCCc---cee
Q 042119          130 QPKKVAFVGSGPMPLTSIIMAKHHLTSTHFDNFDIDEAANDVARSIVASDAEFEGRMKFLTRDIMEVKEQLGEY---DCI  206 (286)
Q Consensus       130 ~~~~VL~IG~G~lp~tai~lA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~g~l~~~i~f~~~D~~~~~~~l~~f---D~V  206 (286)
                      ++.+|||||||+ |.-++.+|+.  ++++|+++|+|+++++.|+++++..| +.++++|+++|+.+...  +.|   |+|
T Consensus       123 ~~~~vLDlG~Gs-G~~~~~la~~--~~~~v~~vDis~~al~~A~~n~~~~~-l~~~v~~~~~D~~~~~~--~~f~~~D~I  196 (284)
T 1nv8_A          123 GIKTVADIGTGS-GAIGVSVAKF--SDAIVFATDVSSKAVEIARKNAERHG-VSDRFFVRKGEFLEPFK--EKFASIEMI  196 (284)
T ss_dssp             TCCEEEEESCTT-SHHHHHHHHH--SSCEEEEEESCHHHHHHHHHHHHHTT-CTTSEEEEESSTTGGGG--GGTTTCCEE
T ss_pred             CCCEEEEEeCch-hHHHHHHHHC--CCCEEEEEECCHHHHHHHHHHHHHcC-CCCceEEEECcchhhcc--cccCCCCEE
Confidence            568999999996 6667888883  89999999999999999999999999 67789999999977432  368   999


Q ss_pred             ehhh-hcc----------CC-------hhHHHHHHHHHH-hhccCCcEEEEeec
Q 042119          207 FLAA-LVG----------MS-------KEEKLTILGHIR-KYMKDGGILLVRSA  241 (286)
Q Consensus       207 ~~aa-lvg----------~~-------~~~k~~vl~~l~-~~l~pgg~lv~r~~  241 (286)
                      +..- .++          +.       ..+...+++++. +.++|||.+++...
T Consensus       197 vsnPPyi~~~~~l~~~v~~ep~~al~~~~dgl~~~~~i~~~~l~pgG~l~~e~~  250 (284)
T 1nv8_A          197 LSNPPYVKSSAHLPKDVLFEPPEALFGGEDGLDFYREFFGRYDTSGKIVLMEIG  250 (284)
T ss_dssp             EECCCCBCGGGSCTTSCCCSCHHHHBCTTTSCHHHHHHHHHCCCTTCEEEEECC
T ss_pred             EEcCCCCCcccccChhhccCcHHHhcCCCcHHHHHHHHHHhcCCCCCEEEEEEC
Confidence            8641 000          00       012237899999 99999999998643

>3ccf_A Cyclopropane-fatty-acyl-phospholipid synthase; YP_321342.1, putative methyltransferase; 1.90A {Anabaena variabilis atcc 29413}

Probab=99.37  E-value=1.2e-12  Score=117.49  Aligned_cols=101  Identities=16%  Similarity=0.169  Sum_probs=82.7

Q ss_pred             CCCCCCEEEEeccCCChhhHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEccccchhhcCCCccee
Q 042119          127 GVVQPKKVAFVGSGPMPLTSIIMAKHHLTSTHFDNFDIDEAANDVARSIVASDAEFEGRMKFLTRDIMEVKEQLGEYDCI  206 (286)
Q Consensus       127 ~~~~~~~VL~IG~G~lp~tai~lA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~g~l~~~i~f~~~D~~~~~~~l~~fD~V  206 (286)
                      ...++.+|||||||+ |..+..+++   ++++|+|+|+|+++++.|++..       .+++|+++|+.+++. .+.||+|
T Consensus        54 ~~~~~~~vLDiGcG~-G~~~~~l~~---~~~~v~gvD~s~~~~~~a~~~~-------~~~~~~~~d~~~~~~-~~~fD~v  121 (279)
T 3ccf_A           54 NPQPGEFILDLGCGT-GQLTEKIAQ---SGAEVLGTDNAATMIEKARQNY-------PHLHFDVADARNFRV-DKPLDAV  121 (279)
T ss_dssp             CCCTTCEEEEETCTT-SHHHHHHHH---TTCEEEEEESCHHHHHHHHHHC-------TTSCEEECCTTTCCC-SSCEEEE
T ss_pred             CCCCCCEEEEecCCC-CHHHHHHHh---CCCeEEEEECCHHHHHHHHhhC-------CCCEEEECChhhCCc-CCCcCEE
Confidence            456789999999996 666677877   8899999999999999999863       368999999988665 3579999


Q ss_pred             ehhhhccCChhHHHHHHHHHHhhccCCcEEEEee
Q 042119          207 FLAALVGMSKEEKLTILGHIRKYMKDGGILLVRS  240 (286)
Q Consensus       207 ~~aalvg~~~~~k~~vl~~l~~~l~pgg~lv~r~  240 (286)
                      +....+.+ ..+...+++++.+.|+|||.+++..
T Consensus       122 ~~~~~l~~-~~d~~~~l~~~~~~LkpgG~l~~~~  154 (279)
T 3ccf_A          122 FSNAMLHW-VKEPEAAIASIHQALKSGGRFVAEF  154 (279)
T ss_dssp             EEESCGGG-CSCHHHHHHHHHHHEEEEEEEEEEE
T ss_pred             EEcchhhh-CcCHHHHHHHHHHhcCCCcEEEEEe
Confidence            87654432 2456689999999999999999865

>2b2c_A Spermidine synthase; beta-alpha, transferase; 2.50A {Caenorhabditis elegans} SCOP: c.66.1.17

Probab=99.37  E-value=8.5e-13  Score=122.49  Aligned_cols=110  Identities=23%  Similarity=0.329  Sum_probs=83.2

Q ss_pred             CCCCEEEEeccCCChhhHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhc--CCC-CCCeEEEEccccchhh-cCCCcc
Q 042119          129 VQPKKVAFVGSGPMPLTSIIMAKHHLTSTHFDNFDIDEAANDVARSIVASD--AEF-EGRMKFLTRDIMEVKE-QLGEYD  204 (286)
Q Consensus       129 ~~~~~VL~IG~G~lp~tai~lA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~--g~l-~~~i~f~~~D~~~~~~-~l~~fD  204 (286)
                      ..+++||+||||. |..+..+++ +.++.+|+++|+|+++++.|++.+...  | + .++++++++|+.+... ..+.||
T Consensus       107 ~~~~~VLdIG~G~-G~~~~~l~~-~~~~~~v~~vDid~~~i~~Ar~~~~~~~~~-~~~~rv~~~~~D~~~~l~~~~~~fD  183 (314)
T 2b2c_A          107 PDPKRVLIIGGGD-GGILREVLK-HESVEKVTMCEIDEMVIDVAKKFLPGMSCG-FSHPKLDLFCGDGFEFLKNHKNEFD  183 (314)
T ss_dssp             SSCCEEEEESCTT-SHHHHHHTT-CTTCCEEEEECSCHHHHHHHHHHCTTTSGG-GGCTTEEEECSCHHHHHHHCTTCEE
T ss_pred             CCCCEEEEEcCCc-CHHHHHHHH-cCCCCEEEEEECCHHHHHHHHHHHHHhccc-cCCCCEEEEEChHHHHHHhcCCCce
Confidence            4678999999995 677788887 456799999999999999999987654  3 3 4789999999987543 235799


Q ss_pred             eeehhhhccCChhHH---HHHHHHHHhhccCCcEEEEeec
Q 042119          205 CIFLAALVGMSKEEK---LTILGHIRKYMKDGGILLVRSA  241 (286)
Q Consensus       205 ~V~~aalvg~~~~~k---~~vl~~l~~~l~pgg~lv~r~~  241 (286)
                      +|+.+..-.......   .++++.+.+.|+|||++++...
T Consensus       184 ~Ii~d~~~~~~~~~~l~t~~~l~~~~~~LkpgG~lv~~~~  223 (314)
T 2b2c_A          184 VIITDSSDPVGPAESLFGQSYYELLRDALKEDGILSSQGE  223 (314)
T ss_dssp             EEEECCC-------------HHHHHHHHEEEEEEEEEECC
T ss_pred             EEEEcCCCCCCcchhhhHHHHHHHHHhhcCCCeEEEEECC
Confidence            999775421111111   5899999999999999999763

>3bkw_A MLL3908 protein, S-adenosylmethionine dependent methyltransferase; NP_104914.1; HET: MSE; 1.60A {Mesorhizobium loti}

Probab=99.37  E-value=1.2e-12  Score=113.97  Aligned_cols=103  Identities=12%  Similarity=0.162  Sum_probs=81.9

Q ss_pred             CCCCCEEEEeccCCChhhHHHHHhhcCCCc-EEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEccccchhhcCCCccee
Q 042119          128 VVQPKKVAFVGSGPMPLTSIIMAKHHLTST-HFDNFDIDEAANDVARSIVASDAEFEGRMKFLTRDIMEVKEQLGEYDCI  206 (286)
Q Consensus       128 ~~~~~~VL~IG~G~lp~tai~lA~~~~~g~-~V~~iDid~~ai~~Ar~~~~~~g~l~~~i~f~~~D~~~~~~~l~~fD~V  206 (286)
                      ..++.+|||||||+ |..+..+++   .+. +|+++|+|+++++.|++....     .+++++++|+.+.+...+.||+|
T Consensus        41 ~~~~~~vLdiG~G~-G~~~~~l~~---~~~~~v~~vD~s~~~~~~a~~~~~~-----~~~~~~~~d~~~~~~~~~~fD~v  111 (243)
T 3bkw_A           41 EVGGLRIVDLGCGF-GWFCRWAHE---HGASYVLGLDLSEKMLARARAAGPD-----TGITYERADLDKLHLPQDSFDLA  111 (243)
T ss_dssp             CCTTCEEEEETCTT-CHHHHHHHH---TTCSEEEEEESCHHHHHHHHHTSCS-----SSEEEEECCGGGCCCCTTCEEEE
T ss_pred             ccCCCEEEEEcCcC-CHHHHHHHH---CCCCeEEEEcCCHHHHHHHHHhccc-----CCceEEEcChhhccCCCCCceEE
Confidence            45789999999997 556677777   355 999999999999999986321     47999999998866544679999


Q ss_pred             ehhhhccCChhHHHHHHHHHHhhccCCcEEEEee
Q 042119          207 FLAALVGMSKEEKLTILGHIRKYMKDGGILLVRS  240 (286)
Q Consensus       207 ~~aalvg~~~~~k~~vl~~l~~~l~pgg~lv~r~  240 (286)
                      +....+.. .++..++++++.+.|+|||.+++..
T Consensus       112 ~~~~~l~~-~~~~~~~l~~~~~~L~pgG~l~~~~  144 (243)
T 3bkw_A          112 YSSLALHY-VEDVARLFRTVHQALSPGGHFVFST  144 (243)
T ss_dssp             EEESCGGG-CSCHHHHHHHHHHHEEEEEEEEEEE
T ss_pred             EEeccccc-cchHHHHHHHHHHhcCcCcEEEEEe
Confidence            86644322 2466789999999999999999865

>1p91_A Ribosomal RNA large subunit methyltransferase A; RLMA, RRMA, 23S rRNA, NESG, structural genomics, PSI, protein structure initiative; HET: SAM; 2.80A {Escherichia coli} SCOP: c.66.1.33

Probab=99.37  E-value=2e-12  Score=115.16  Aligned_cols=119  Identities=16%  Similarity=0.180  Sum_probs=88.4

Q ss_pred             CCCCEEEEeccCCChhhHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEccccchhhcCCCcceeeh
Q 042119          129 VQPKKVAFVGSGPMPLTSIIMAKHHLTSTHFDNFDIDEAANDVARSIVASDAEFEGRMKFLTRDIMEVKEQLGEYDCIFL  208 (286)
Q Consensus       129 ~~~~~VL~IG~G~lp~tai~lA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~g~l~~~i~f~~~D~~~~~~~l~~fD~V~~  208 (286)
                      .++.+||+||||+ |..+..+++ ..++.+|+++|+|+++++.|++.    +   .+++|.++|+.+++...+.||+|+.
T Consensus        84 ~~~~~vLdiG~G~-G~~~~~l~~-~~~~~~v~~vD~s~~~~~~a~~~----~---~~~~~~~~d~~~~~~~~~~fD~v~~  154 (269)
T 1p91_A           84 DKATAVLDIGCGE-GYYTHAFAD-ALPEITTFGLDVSKVAIKAAAKR----Y---PQVTFCVASSHRLPFSDTSMDAIIR  154 (269)
T ss_dssp             TTCCEEEEETCTT-STTHHHHHH-TCTTSEEEEEESCHHHHHHHHHH----C---TTSEEEECCTTSCSBCTTCEEEEEE
T ss_pred             CCCCEEEEECCCC-CHHHHHHHH-hCCCCeEEEEeCCHHHHHHHHHh----C---CCcEEEEcchhhCCCCCCceeEEEE
Confidence            5788999999998 666677777 35789999999999999999886    2   4689999999877655568999984


Q ss_pred             hhhccCChhHHHHHHHHHHhhccCCcEEEEeecC-----cceeeecccCCcc-----cccCcEEEE
Q 042119          209 AALVGMSKEEKLTILGHIRKYMKDGGILLVRSAK-----GARAFLYPVVVEH-----DLLDFEVLS  264 (286)
Q Consensus       209 aalvg~~~~~k~~vl~~l~~~l~pgg~lv~r~~~-----g~r~~lyp~v~~~-----~l~gf~~~~  264 (286)
                      . .+       ...++++.+.|+|||.+++....     .++..+|+.....     ...||+++.
T Consensus       155 ~-~~-------~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gf~~~~  212 (269)
T 1p91_A          155 I-YA-------PCKAEELARVVKPGGWVITATPGPRHLMELKGLIYNEVHLHAPHAEQLEGFTLQQ  212 (269)
T ss_dssp             E-SC-------CCCHHHHHHHEEEEEEEEEEEECTTTTHHHHTTTCSSCCCCCCCCCCCTTEEEEE
T ss_pred             e-CC-------hhhHHHHHHhcCCCcEEEEEEcCHHHHHHHHHHhhcccccccchhhHhcCCcEEE
Confidence            3 22       13688999999999999987632     2334456543322     125898764

>3mq2_A 16S rRNA methyltransferase; methyltranferase, ribosomal, antibiotic resistance, aminoglycoside, S-adenosyl-L-methionine; HET: SAH; 1.69A {Streptomyces SP}

Probab=99.37  E-value=3.6e-13  Score=116.39  Aligned_cols=109  Identities=15%  Similarity=0.092  Sum_probs=78.7

Q ss_pred             CCCCCCEEEEeccCCChhhHHHHHhhcCCCcEEEEEeCChHHHHHHHH----HHHhcCCCCCCeEEEEccccchhhcCCC
Q 042119          127 GVVQPKKVAFVGSGPMPLTSIIMAKHHLTSTHFDNFDIDEAANDVARS----IVASDAEFEGRMKFLTRDIMEVKEQLGE  202 (286)
Q Consensus       127 ~~~~~~~VL~IG~G~lp~tai~lA~~~~~g~~V~~iDid~~ai~~Ar~----~~~~~g~l~~~i~f~~~D~~~~~~~l~~  202 (286)
                      .+.++.+|||||||+ |..+..+|+ ..|+++|+|+|+|+++++.+.+    .....+ + ++++|+++|+.+++...+.
T Consensus        24 ~~~~~~~vLDiGcG~-G~~~~~la~-~~p~~~v~gvD~s~~~l~~~~~~a~~~~~~~~-~-~~v~~~~~d~~~l~~~~~~   99 (218)
T 3mq2_A           24 RSQYDDVVLDVGTGD-GKHPYKVAR-QNPSRLVVALDADKSRMEKISAKAAAKPAKGG-L-PNLLYLWATAERLPPLSGV   99 (218)
T ss_dssp             HTTSSEEEEEESCTT-CHHHHHHHH-HCTTEEEEEEESCGGGGHHHHHHHTSCGGGTC-C-TTEEEEECCSTTCCSCCCE
T ss_pred             hccCCCEEEEecCCC-CHHHHHHHH-HCCCCEEEEEECCHHHHHHHHHHHHHhhhhcC-C-CceEEEecchhhCCCCCCC
Confidence            357789999999996 666777887 4789999999999998885433    333455 2 5899999999887664444


Q ss_pred             cceeehhhhcc----CChhHHHHHHHHHHhhccCCcEEEEee
Q 042119          203 YDCIFLAALVG----MSKEEKLTILGHIRKYMKDGGILLVRS  240 (286)
Q Consensus       203 fD~V~~aalvg----~~~~~k~~vl~~l~~~l~pgg~lv~r~  240 (286)
                       |.|++....+    ...++..++++++.+.|||||.+++..
T Consensus       100 -d~v~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~  140 (218)
T 3mq2_A          100 -GELHVLMPWGSLLRGVLGSSPEMLRGMAAVCRPGASFLVAL  140 (218)
T ss_dssp             -EEEEEESCCHHHHHHHHTSSSHHHHHHHHTEEEEEEEEEEE
T ss_pred             -CEEEEEccchhhhhhhhccHHHHHHHHHHHcCCCcEEEEEe
Confidence             6665221000    001233689999999999999999854

>1o54_A SAM-dependent O-methyltransferase; TM0748, structural genomi PSI, protein structure initiative, joint center for structu genomics; 1.65A {Thermotoga maritima} SCOP: c.66.1.13

Probab=99.37  E-value=1.3e-12  Score=117.65  Aligned_cols=108  Identities=18%  Similarity=0.198  Sum_probs=88.4

Q ss_pred             hcCCCCCCEEEEeccCCChhhHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEccccchhhcCCCcc
Q 042119          125 ENGVVQPKKVAFVGSGPMPLTSIIMAKHHLTSTHFDNFDIDEAANDVARSIVASDAEFEGRMKFLTRDIMEVKEQLGEYD  204 (286)
Q Consensus       125 ~~~~~~~~~VL~IG~G~lp~tai~lA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~g~l~~~i~f~~~D~~~~~~~l~~fD  204 (286)
                      ...+.++.+|||+|||+ |..++.++++..++.+|+++|+|+++++.|++.++..| +.++++++++|+.+. .+.+.||
T Consensus       107 ~~~~~~~~~VLDiG~G~-G~~~~~la~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~-~~~~v~~~~~d~~~~-~~~~~~D  183 (277)
T 1o54_A          107 MLDVKEGDRIIDTGVGS-GAMCAVLARAVGSSGKVFAYEKREEFAKLAESNLTKWG-LIERVTIKVRDISEG-FDEKDVD  183 (277)
T ss_dssp             HTTCCTTCEEEEECCTT-SHHHHHHHHHTTTTCEEEEECCCHHHHHHHHHHHHHTT-CGGGEEEECCCGGGC-CSCCSEE
T ss_pred             HhCCCCCCEEEEECCcC-CHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHcC-CCCCEEEEECCHHHc-ccCCccC
Confidence            34567889999999997 56667777743568999999999999999999999988 667899999999775 2224799


Q ss_pred             eeehhhhccCChhHHHHHHHHHHhhccCCcEEEEeec
Q 042119          205 CIFLAALVGMSKEEKLTILGHIRKYMKDGGILLVRSA  241 (286)
Q Consensus       205 ~V~~aalvg~~~~~k~~vl~~l~~~l~pgg~lv~r~~  241 (286)
                      +|+.+.      +...++++++.+.|+|||.+++-..
T Consensus       184 ~V~~~~------~~~~~~l~~~~~~L~pgG~l~~~~~  214 (277)
T 1o54_A          184 ALFLDV------PDPWNYIDKCWEALKGGGRFATVCP  214 (277)
T ss_dssp             EEEECC------SCGGGTHHHHHHHEEEEEEEEEEES
T ss_pred             EEEECC------cCHHHHHHHHHHHcCCCCEEEEEeC
Confidence            999742      3445799999999999999998764

>3tma_A Methyltransferase; thump domain; 2.05A {Thermus thermophilus}

Probab=99.37  E-value=5.8e-12  Score=117.67  Aligned_cols=116  Identities=16%  Similarity=0.118  Sum_probs=92.0

Q ss_pred             HhcCCCCCCEEEEeccCCChhhHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEccccchhhcCCCc
Q 042119          124 SENGVVQPKKVAFVGSGPMPLTSIIMAKHHLTSTHFDNFDIDEAANDVARSIVASDAEFEGRMKFLTRDIMEVKEQLGEY  203 (286)
Q Consensus       124 ~~~~~~~~~~VL~IG~G~lp~tai~lA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~g~l~~~i~f~~~D~~~~~~~l~~f  203 (286)
                      ...+..++.+|||+|||+ |.-++.+|....++.+|+|+|+|+.+++.|+++++..| +. +++|.++|+.+++.....|
T Consensus       197 ~~~~~~~~~~vLD~gcGs-G~~~ie~a~~~~~~~~v~g~Di~~~~i~~a~~n~~~~g-~~-~i~~~~~D~~~~~~~~~~~  273 (354)
T 3tma_A          197 RLADARPGMRVLDPFTGS-GTIALEAASTLGPTSPVYAGDLDEKRLGLAREAALASG-LS-WIRFLRADARHLPRFFPEV  273 (354)
T ss_dssp             HHTTCCTTCCEEESSCTT-SHHHHHHHHHHCTTSCEEEEESCHHHHHHHHHHHHHTT-CT-TCEEEECCGGGGGGTCCCC
T ss_pred             HHhCCCCCCEEEeCCCCc-CHHHHHHHHhhCCCceEEEEECCHHHHHHHHHHHHHcC-CC-ceEEEeCChhhCccccCCC
Confidence            344567889999999997 55567777632267999999999999999999999999 56 9999999999987766779


Q ss_pred             ceeehhhhccCC-------hhHHHHHHHHHHhhccCCcEEEEeecC
Q 042119          204 DCIFLAALVGMS-------KEEKLTILGHIRKYMKDGGILLVRSAK  242 (286)
Q Consensus       204 D~V~~aalvg~~-------~~~k~~vl~~l~~~l~pgg~lv~r~~~  242 (286)
                      |+|+..---|..       ...+.++++.+.+.|+|||.+++-+.+
T Consensus       274 D~Ii~npPyg~r~~~~~~~~~~~~~~~~~~~~~LkpgG~l~i~t~~  319 (354)
T 3tma_A          274 DRILANPPHGLRLGRKEGLFHLYWDFLRGALALLPPGGRVALLTLR  319 (354)
T ss_dssp             SEEEECCCSCC----CHHHHHHHHHHHHHHHHTSCTTCEEEEEESC
T ss_pred             CEEEECCCCcCccCCcccHHHHHHHHHHHHHHhcCCCcEEEEEeCC
Confidence            999874321211       123468999999999999999998754

>3m33_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, MCSG, midwest center for structural genomics; 2.19A {Deinococcus radiodurans}

Probab=99.37  E-value=1.2e-12  Score=114.31  Aligned_cols=91  Identities=11%  Similarity=0.132  Sum_probs=75.8

Q ss_pred             CCCCEEEEeccCCChhhHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEcccc-chhhc-CCCccee
Q 042119          129 VQPKKVAFVGSGPMPLTSIIMAKHHLTSTHFDNFDIDEAANDVARSIVASDAEFEGRMKFLTRDIM-EVKEQ-LGEYDCI  206 (286)
Q Consensus       129 ~~~~~VL~IG~G~lp~tai~lA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~g~l~~~i~f~~~D~~-~~~~~-l~~fD~V  206 (286)
                      .++.+|||||||+ |..+..+++   .+++|+++|+|+.+++.|++.    .   .+++|+++|+. .++.. .+.||+|
T Consensus        47 ~~~~~vLDiGcG~-G~~~~~l~~---~~~~v~~vD~s~~~~~~a~~~----~---~~~~~~~~d~~~~~~~~~~~~fD~v  115 (226)
T 3m33_A           47 TPQTRVLEAGCGH-GPDAARFGP---QAARWAAYDFSPELLKLARAN----A---PHADVYEWNGKGELPAGLGAPFGLI  115 (226)
T ss_dssp             CTTCEEEEESCTT-SHHHHHHGG---GSSEEEEEESCHHHHHHHHHH----C---TTSEEEECCSCSSCCTTCCCCEEEE
T ss_pred             CCCCeEEEeCCCC-CHHHHHHHH---cCCEEEEEECCHHHHHHHHHh----C---CCceEEEcchhhccCCcCCCCEEEE
Confidence            6789999999997 667788888   388999999999999999997    2   47999999994 44444 4579999


Q ss_pred             ehhhhccCChhHHHHHHHHHHhhccCCcEEE
Q 042119          207 FLAALVGMSKEEKLTILGHIRKYMKDGGILL  237 (286)
Q Consensus       207 ~~aalvg~~~~~k~~vl~~l~~~l~pgg~lv  237 (286)
                      +..       .+...++.++.+.|||||.++
T Consensus       116 ~~~-------~~~~~~l~~~~~~LkpgG~l~  139 (226)
T 3m33_A          116 VSR-------RGPTSVILRLPELAAPDAHFL  139 (226)
T ss_dssp             EEE-------SCCSGGGGGHHHHEEEEEEEE
T ss_pred             EeC-------CCHHHHHHHHHHHcCCCcEEE
Confidence            865       244578999999999999998

>1ws6_A Methyltransferase; structural genomics, riken structural genomics/proteomics initiative, RSGI; 2.50A {Thermus thermophilus} SCOP: c.66.1.46

Probab=99.37  E-value=6.6e-13  Score=109.42  Aligned_cols=102  Identities=10%  Similarity=0.126  Sum_probs=80.1

Q ss_pred             CCCEEEEeccCCChhhHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEccccchhhc----CCCcce
Q 042119          130 QPKKVAFVGSGPMPLTSIIMAKHHLTSTHFDNFDIDEAANDVARSIVASDAEFEGRMKFLTRDIMEVKEQ----LGEYDC  205 (286)
Q Consensus       130 ~~~~VL~IG~G~lp~tai~lA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~g~l~~~i~f~~~D~~~~~~~----l~~fD~  205 (286)
                      ++.+|||+|||+ |..++.+++   .+.+|+++|+|+++++.|++.+...| +  +++|+++|+.+....    .+.||+
T Consensus        41 ~~~~vLD~GcG~-G~~~~~l~~---~~~~v~~vD~~~~~~~~a~~~~~~~~-~--~~~~~~~d~~~~~~~~~~~~~~~D~  113 (171)
T 1ws6_A           41 RRGRFLDPFAGS-GAVGLEAAS---EGWEAVLVEKDPEAVRLLKENVRRTG-L--GARVVALPVEVFLPEAKAQGERFTV  113 (171)
T ss_dssp             TCCEEEEETCSS-CHHHHHHHH---TTCEEEEECCCHHHHHHHHHHHHHHT-C--CCEEECSCHHHHHHHHHHTTCCEEE
T ss_pred             CCCeEEEeCCCc-CHHHHHHHH---CCCeEEEEeCCHHHHHHHHHHHHHcC-C--ceEEEeccHHHHHHhhhccCCceEE
Confidence            678999999996 666777887   46669999999999999999999988 4  899999999874322    136999


Q ss_pred             eehhhhccCChhHHHHHHHHHH--hhccCCcEEEEeec
Q 042119          206 IFLAALVGMSKEEKLTILGHIR--KYMKDGGILLVRSA  241 (286)
Q Consensus       206 V~~aalvg~~~~~k~~vl~~l~--~~l~pgg~lv~r~~  241 (286)
                      |+.....+   ....++++.+.  +.|+|||.+++...
T Consensus       114 i~~~~~~~---~~~~~~~~~~~~~~~L~~gG~~~~~~~  148 (171)
T 1ws6_A          114 AFMAPPYA---MDLAALFGELLASGLVEAGGLYVLQHP  148 (171)
T ss_dssp             EEECCCTT---SCTTHHHHHHHHHTCEEEEEEEEEEEE
T ss_pred             EEECCCCc---hhHHHHHHHHHhhcccCCCcEEEEEeC
Confidence            99764222   23345666676  99999999998763

>1i1n_A Protein-L-isoaspartate O-methyltransferase; S-adenosyl homocysteine, protein repair; HET: SAH; 1.50A {Homo sapiens} SCOP: c.66.1.7 PDB: 1kr5_A*

Probab=99.37  E-value=1.4e-12  Score=113.34  Aligned_cols=105  Identities=20%  Similarity=0.192  Sum_probs=82.6

Q ss_pred             CCCCCEEEEeccCCChhhHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCC----CCCeEEEEccccchhhcCCCc
Q 042119          128 VVQPKKVAFVGSGPMPLTSIIMAKHHLTSTHFDNFDIDEAANDVARSIVASDAEF----EGRMKFLTRDIMEVKEQLGEY  203 (286)
Q Consensus       128 ~~~~~~VL~IG~G~lp~tai~lA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~g~l----~~~i~f~~~D~~~~~~~l~~f  203 (286)
                      +.++.+||+||||+ |..+..+++...+..+|+++|+|+.+++.|++.+...| +    .++++++++|+.+.....+.|
T Consensus        75 ~~~~~~vLDiG~G~-G~~~~~la~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~-~~~~~~~~v~~~~~d~~~~~~~~~~f  152 (226)
T 1i1n_A           75 LHEGAKALDVGSGS-GILTACFARMVGCTGKVIGIDHIKELVDDSVNNVRKDD-PTLLSSGRVQLVVGDGRMGYAEEAPY  152 (226)
T ss_dssp             SCTTCEEEEETCTT-SHHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHHC-THHHHTSSEEEEESCGGGCCGGGCCE
T ss_pred             CCCCCEEEEEcCCc-CHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhhc-ccccCCCcEEEEECCcccCcccCCCc
Confidence            57889999999997 55556777632355799999999999999999998866 3    368999999997654444579


Q ss_pred             ceeehhhhccCChhHHHHHHHHHHhhccCCcEEEEeec
Q 042119          204 DCIFLAALVGMSKEEKLTILGHIRKYMKDGGILLVRSA  241 (286)
Q Consensus       204 D~V~~aalvg~~~~~k~~vl~~l~~~l~pgg~lv~r~~  241 (286)
                      |+|+......       .+++++.+.|||||++++...
T Consensus       153 D~i~~~~~~~-------~~~~~~~~~LkpgG~lv~~~~  183 (226)
T 1i1n_A          153 DAIHVGAAAP-------VVPQALIDQLKPGGRLILPVG  183 (226)
T ss_dssp             EEEEECSBBS-------SCCHHHHHTEEEEEEEEEEES
T ss_pred             CEEEECCchH-------HHHHHHHHhcCCCcEEEEEEe
Confidence            9998765431       245688999999999999753

>2yxe_A Protein-L-isoaspartate O-methyltransferase; rossman-type fold, alpha/beta/alpha sandwich structure, STRU genomics, NPPSFA; 2.00A {Methanocaldococcus jannaschii}

Probab=99.37  E-value=4.7e-12  Score=108.97  Aligned_cols=109  Identities=18%  Similarity=0.138  Sum_probs=84.3

Q ss_pred             hcCCCCCCEEEEeccCCChhhHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEccccchhhcCCCcc
Q 042119          125 ENGVVQPKKVAFVGSGPMPLTSIIMAKHHLTSTHFDNFDIDEAANDVARSIVASDAEFEGRMKFLTRDIMEVKEQLGEYD  204 (286)
Q Consensus       125 ~~~~~~~~~VL~IG~G~lp~tai~lA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~g~l~~~i~f~~~D~~~~~~~l~~fD  204 (286)
                      .....++.+||+||||+ |..+..+++...++.+|+++|+|+++++.|++.+...| + ++++++++|+.+.....+.||
T Consensus        72 ~~~~~~~~~vLdiG~G~-G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~-~-~~v~~~~~d~~~~~~~~~~fD  148 (215)
T 2yxe_A           72 LLDLKPGMKVLEIGTGC-GYHAAVTAEIVGEDGLVVSIERIPELAEKAERTLRKLG-Y-DNVIVIVGDGTLGYEPLAPYD  148 (215)
T ss_dssp             HTTCCTTCEEEEECCTT-SHHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHHT-C-TTEEEEESCGGGCCGGGCCEE
T ss_pred             hhCCCCCCEEEEECCCc-cHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcC-C-CCeEEEECCcccCCCCCCCee
Confidence            34567889999999996 66677777743345899999999999999999999888 3 569999999865333235799


Q ss_pred             eeehhhhccCChhHHHHHHHHHHhhccCCcEEEEeecCc
Q 042119          205 CIFLAALVGMSKEEKLTILGHIRKYMKDGGILLVRSAKG  243 (286)
Q Consensus       205 ~V~~aalvg~~~~~k~~vl~~l~~~l~pgg~lv~r~~~g  243 (286)
                      +|+.......       +.+++.+.|+|||++++....+
T Consensus       149 ~v~~~~~~~~-------~~~~~~~~L~pgG~lv~~~~~~  180 (215)
T 2yxe_A          149 RIYTTAAGPK-------IPEPLIRQLKDGGKLLMPVGRY  180 (215)
T ss_dssp             EEEESSBBSS-------CCHHHHHTEEEEEEEEEEESSS
T ss_pred             EEEECCchHH-------HHHHHHHHcCCCcEEEEEECCC
Confidence            9997755432       1247899999999999876543

>2frn_A Hypothetical protein PH0793; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; 2.10A {Pyrococcus horikoshii OT3} PDB: 3k6r_A 3a25_A* 3a26_A*

Probab=99.37  E-value=1.2e-12  Score=118.77  Aligned_cols=104  Identities=14%  Similarity=0.053  Sum_probs=84.8

Q ss_pred             CCCCCEEEEeccCCChhhHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEccccchhhcCCCcceee
Q 042119          128 VVQPKKVAFVGSGPMPLTSIIMAKHHLTSTHFDNFDIDEAANDVARSIVASDAEFEGRMKFLTRDIMEVKEQLGEYDCIF  207 (286)
Q Consensus       128 ~~~~~~VL~IG~G~lp~tai~lA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~g~l~~~i~f~~~D~~~~~~~l~~fD~V~  207 (286)
                      .+++++|||+|||++ .-++.+|+. .. .+|+|+|+|+++++.|+++++..| +.++++|+++|+.+... ...||+|+
T Consensus       123 ~~~~~~VLDlgcG~G-~~~~~la~~-~~-~~V~~vD~s~~~~~~a~~n~~~n~-~~~~v~~~~~D~~~~~~-~~~fD~Vi  197 (278)
T 2frn_A          123 AKPDELVVDMFAGIG-HLSLPIAVY-GK-AKVIAIEKDPYTFKFLVENIHLNK-VEDRMSAYNMDNRDFPG-ENIADRIL  197 (278)
T ss_dssp             CCTTCEEEETTCTTT-TTHHHHHHH-TC-CEEEEECCCHHHHHHHHHHHHHTT-CTTTEEEECSCTTTCCC-CSCEEEEE
T ss_pred             CCCCCEEEEecccCC-HHHHHHHHh-CC-CEEEEEECCHHHHHHHHHHHHHcC-CCceEEEEECCHHHhcc-cCCccEEE
Confidence            367899999999975 556777772 22 279999999999999999999999 67789999999988765 35799998


Q ss_pred             hhhhccCChhHHHHHHHHHHhhccCCcEEEEeec
Q 042119          208 LAALVGMSKEEKLTILGHIRKYMKDGGILLVRSA  241 (286)
Q Consensus       208 ~aalvg~~~~~k~~vl~~l~~~l~pgg~lv~r~~  241 (286)
                      +...     ....++++++.+.|+|||.+++.+.
T Consensus       198 ~~~p-----~~~~~~l~~~~~~LkpgG~l~~~~~  226 (278)
T 2frn_A          198 MGYV-----VRTHEFIPKALSIAKDGAIIHYHNT  226 (278)
T ss_dssp             ECCC-----SSGGGGHHHHHHHEEEEEEEEEEEE
T ss_pred             ECCc-----hhHHHHHHHHHHHCCCCeEEEEEEe
Confidence            7532     2335789999999999999998763

>2gs9_A Hypothetical protein TT1324; methyl transferase, structural genomics, NPPSFA, national PR protein structural and functional analyses; HET: SAH; 2.60A {Thermus thermophilus}

Probab=99.37  E-value=2.5e-12  Score=110.25  Aligned_cols=109  Identities=17%  Similarity=0.095  Sum_probs=83.6

Q ss_pred             HHHHHHHHhcCCCCCCEEEEeccCCChhhHHHHHhhcCCCc-EEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEccccc
Q 042119          117 KLEYTILSENGVVQPKKVAFVGSGPMPLTSIIMAKHHLTST-HFDNFDIDEAANDVARSIVASDAEFEGRMKFLTRDIME  195 (286)
Q Consensus       117 ~~E~~~l~~~~~~~~~~VL~IG~G~lp~tai~lA~~~~~g~-~V~~iDid~~ai~~Ar~~~~~~g~l~~~i~f~~~D~~~  195 (286)
                      +.+...+.+... ++.+|||||||++.++ ..+      +. +|+++|+|+++++.|++..       .+++++++|+.+
T Consensus        24 ~~~~~~l~~~~~-~~~~vLdiG~G~G~~~-~~l------~~~~v~~vD~s~~~~~~a~~~~-------~~~~~~~~d~~~   88 (211)
T 2gs9_A           24 AEEERALKGLLP-PGESLLEVGAGTGYWL-RRL------PYPQKVGVEPSEAMLAVGRRRA-------PEATWVRAWGEA   88 (211)
T ss_dssp             HHHHHHHHTTCC-CCSEEEEETCTTCHHH-HHC------CCSEEEEECCCHHHHHHHHHHC-------TTSEEECCCTTS
T ss_pred             HHHHHHHHHhcC-CCCeEEEECCCCCHhH-HhC------CCCeEEEEeCCHHHHHHHHHhC-------CCcEEEEccccc
Confidence            334455655544 8899999999975433 322      56 9999999999999999874       368999999988


Q ss_pred             hhhcCCCcceeehhhhccCChhHHHHHHHHHHhhccCCcEEEEeec
Q 042119          196 VKEQLGEYDCIFLAALVGMSKEEKLTILGHIRKYMKDGGILLVRSA  241 (286)
Q Consensus       196 ~~~~l~~fD~V~~aalvg~~~~~k~~vl~~l~~~l~pgg~lv~r~~  241 (286)
                      ++...+.||+|+....+.+ .++..++++++.+.|||||.+++...
T Consensus        89 ~~~~~~~fD~v~~~~~l~~-~~~~~~~l~~~~~~L~pgG~l~i~~~  133 (211)
T 2gs9_A           89 LPFPGESFDVVLLFTTLEF-VEDVERVLLEARRVLRPGGALVVGVL  133 (211)
T ss_dssp             CCSCSSCEEEEEEESCTTT-CSCHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred             CCCCCCcEEEEEEcChhhh-cCCHHHHHHHHHHHcCCCCEEEEEec
Confidence            7655567999987654422 24667899999999999999999763

>3p2e_A 16S rRNA methylase; methyltransferase, transferase, NPMA; HET: SAH; 1.68A {Escherichia coli} PDB: 3p2i_A 3p2k_A* 3pb3_A* 3mte_A*

Probab=99.36  E-value=7.5e-13  Score=116.75  Aligned_cols=105  Identities=13%  Similarity=0.061  Sum_probs=76.7

Q ss_pred             CCCCCEEEEeccCCChhhHHHHHhhcCCCcEEEEEeCC-hHHHHHH---HHHHHhcCCCCCCeEEEEccccchhhcC-CC
Q 042119          128 VVQPKKVAFVGSGPMPLTSIIMAKHHLTSTHFDNFDID-EAANDVA---RSIVASDAEFEGRMKFLTRDIMEVKEQL-GE  202 (286)
Q Consensus       128 ~~~~~~VL~IG~G~lp~tai~lA~~~~~g~~V~~iDid-~~ai~~A---r~~~~~~g~l~~~i~f~~~D~~~~~~~l-~~  202 (286)
                      ..++.+|||||||+ |..++.+|+ ..++++|+|||+| +.+++.|   ++.+.+.|.  .+++|+++|+.+++... +.
T Consensus        22 ~~~~~~vLDiGCG~-G~~~~~la~-~~~~~~v~GvD~s~~~ml~~A~~A~~~~~~~~~--~~v~~~~~d~~~l~~~~~d~   97 (225)
T 3p2e_A           22 GQFDRVHIDLGTGD-GRNIYKLAI-NDQNTFYIGIDPVKENLFDISKKIIKKPSKGGL--SNVVFVIAAAESLPFELKNI   97 (225)
T ss_dssp             TTCSEEEEEETCTT-SHHHHHHHH-TCTTEEEEEECSCCGGGHHHHHHHTSCGGGTCC--SSEEEECCBTTBCCGGGTTC
T ss_pred             CCCCCEEEEEeccC-cHHHHHHHH-hCCCCEEEEEeCCHHHHHHHHHHHHHHHHHcCC--CCeEEEEcCHHHhhhhccCe
Confidence            36788999999996 666778886 3689999999999 5555555   888877883  57999999998875422 23


Q ss_pred             cceeehhhhccCCh------hHHHHHHHHHHhhccCCcEEEE
Q 042119          203 YDCIFLAALVGMSK------EEKLTILGHIRKYMKDGGILLV  238 (286)
Q Consensus       203 fD~V~~aalvg~~~------~~k~~vl~~l~~~l~pgg~lv~  238 (286)
                      +|.|++..  .++.      .+..+++.++++.|||||.+++
T Consensus        98 v~~i~~~~--~~~~~~~~~~~~~~~~l~~~~r~LkpGG~l~i  137 (225)
T 3p2e_A           98 ADSISILF--PWGTLLEYVIKPNRDILSNVADLAKKEAHFEF  137 (225)
T ss_dssp             EEEEEEES--CCHHHHHHHHTTCHHHHHHHHTTEEEEEEEEE
T ss_pred             EEEEEEeC--CCcHHhhhhhcchHHHHHHHHHhcCCCcEEEE
Confidence            45444321  1100      1124689999999999999998

>2yvl_A TRMI protein, hypothetical protein; tRNA, methyltransferase, S-adenosylmethionine, structural GE NPPSFA; HET: SAM; 2.20A {Aquifex aeolicus}

Probab=99.36  E-value=3.3e-12  Score=111.89  Aligned_cols=106  Identities=15%  Similarity=0.204  Sum_probs=87.5

Q ss_pred             hcCCCCCCEEEEeccCCChhhHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEccccchhhcCCCcc
Q 042119          125 ENGVVQPKKVAFVGSGPMPLTSIIMAKHHLTSTHFDNFDIDEAANDVARSIVASDAEFEGRMKFLTRDIMEVKEQLGEYD  204 (286)
Q Consensus       125 ~~~~~~~~~VL~IG~G~lp~tai~lA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~g~l~~~i~f~~~D~~~~~~~l~~fD  204 (286)
                      .....++++||++|||+ |..++.++++   +.+|+++|+|+++++.|++..+..| +.+++++..+|+.+.......||
T Consensus        86 ~~~~~~~~~vldiG~G~-G~~~~~l~~~---~~~v~~vD~~~~~~~~a~~~~~~~~-~~~~~~~~~~d~~~~~~~~~~~D  160 (248)
T 2yvl_A           86 KLNLNKEKRVLEFGTGS-GALLAVLSEV---AGEVWTFEAVEEFYKTAQKNLKKFN-LGKNVKFFNVDFKDAEVPEGIFH  160 (248)
T ss_dssp             HTTCCTTCEEEEECCTT-SHHHHHHHHH---SSEEEEECSCHHHHHHHHHHHHHTT-CCTTEEEECSCTTTSCCCTTCBS
T ss_pred             hcCCCCCCEEEEeCCCc-cHHHHHHHHh---CCEEEEEecCHHHHHHHHHHHHHcC-CCCcEEEEEcChhhcccCCCccc
Confidence            34557889999999995 7777888882   8899999999999999999999888 67899999999977441234799


Q ss_pred             eeehhhhccCChhHHHHHHHHHHhhccCCcEEEEeec
Q 042119          205 CIFLAALVGMSKEEKLTILGHIRKYMKDGGILLVRSA  241 (286)
Q Consensus       205 ~V~~aalvg~~~~~k~~vl~~l~~~l~pgg~lv~r~~  241 (286)
                      +|+.+.      ++...+++++.+.|+|||.+++-..
T Consensus       161 ~v~~~~------~~~~~~l~~~~~~L~~gG~l~~~~~  191 (248)
T 2yvl_A          161 AAFVDV------REPWHYLEKVHKSLMEGAPVGFLLP  191 (248)
T ss_dssp             EEEECS------SCGGGGHHHHHHHBCTTCEEEEEES
T ss_pred             EEEECC------cCHHHHHHHHHHHcCCCCEEEEEeC
Confidence            999642      2445789999999999999998764

>1i9g_A Hypothetical protein RV2118C; mtase, adoMet, crystal, structural genomics, protein structure initiative; HET: SAM; 1.98A {Mycobacterium tuberculosis} SCOP: c.66.1.13

Probab=99.36  E-value=2.3e-12  Score=115.48  Aligned_cols=110  Identities=15%  Similarity=0.235  Sum_probs=88.1

Q ss_pred             hcCCCCCCEEEEeccCCChhhHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhc-CCCCCCeEEEEccccchhhcCCCc
Q 042119          125 ENGVVQPKKVAFVGSGPMPLTSIIMAKHHLTSTHFDNFDIDEAANDVARSIVASD-AEFEGRMKFLTRDIMEVKEQLGEY  203 (286)
Q Consensus       125 ~~~~~~~~~VL~IG~G~lp~tai~lA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~-g~l~~~i~f~~~D~~~~~~~l~~f  203 (286)
                      ...+.++.+|||+|||+ |..+..+++...++.+|+++|+|+++++.|++.++.. |.+.++++++++|+.+.+.+.+.|
T Consensus        94 ~~~~~~~~~vLdiG~G~-G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~g~~~~~v~~~~~d~~~~~~~~~~~  172 (280)
T 1i9g_A           94 EGDIFPGARVLEAGAGS-GALTLSLLRAVGPAGQVISYEQRADHAEHARRNVSGCYGQPPDNWRLVVSDLADSELPDGSV  172 (280)
T ss_dssp             HTTCCTTCEEEEECCTT-SHHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHHHTSCCTTEEEECSCGGGCCCCTTCE
T ss_pred             HcCCCCCCEEEEEcccc-cHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHhcCCCCCcEEEEECchHhcCCCCCce
Confidence            34567889999999996 5556677764456899999999999999999999887 413478999999998765444579


Q ss_pred             ceeehhhhccCChhHHHHHHHHHHhhccCCcEEEEeec
Q 042119          204 DCIFLAALVGMSKEEKLTILGHIRKYMKDGGILLVRSA  241 (286)
Q Consensus       204 D~V~~aalvg~~~~~k~~vl~~l~~~l~pgg~lv~r~~  241 (286)
                      |+|+.+.      .+..++++++.+.|+|||.+++-..
T Consensus       173 D~v~~~~------~~~~~~l~~~~~~L~pgG~l~~~~~  204 (280)
T 1i9g_A          173 DRAVLDM------LAPWEVLDAVSRLLVAGGVLMVYVA  204 (280)
T ss_dssp             EEEEEES------SCGGGGHHHHHHHEEEEEEEEEEES
T ss_pred             eEEEECC------cCHHHHHHHHHHhCCCCCEEEEEeC
Confidence            9999742      2344799999999999999999753

>3ege_A Putative methyltransferase from antibiotic biosyn pathway; YP_324569.1, putative methyltransferase from antibiotic BIOS pathway; 2.40A {Anabaena variabilis atcc 29413}

Probab=99.36  E-value=1.1e-12  Score=117.09  Aligned_cols=100  Identities=9%  Similarity=0.084  Sum_probs=81.6

Q ss_pred             CCCCCCEEEEeccCCChhhHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEccccchhhcCCCccee
Q 042119          127 GVVQPKKVAFVGSGPMPLTSIIMAKHHLTSTHFDNFDIDEAANDVARSIVASDAEFEGRMKFLTRDIMEVKEQLGEYDCI  206 (286)
Q Consensus       127 ~~~~~~~VL~IG~G~lp~tai~lA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~g~l~~~i~f~~~D~~~~~~~l~~fD~V  206 (286)
                      ...++.+|||||||+ |..+..+++   ++++|+|+|+|+.+++.|++..        +++|+++|+.+++...+.||+|
T Consensus        31 ~~~~~~~vLDiGcG~-G~~~~~l~~---~~~~v~gvD~s~~~~~~a~~~~--------~~~~~~~d~~~~~~~~~~fD~v   98 (261)
T 3ege_A           31 NLPKGSVIADIGAGT-GGYSVALAN---QGLFVYAVEPSIVMRQQAVVHP--------QVEWFTGYAENLALPDKSVDGV   98 (261)
T ss_dssp             CCCTTCEEEEETCTT-SHHHHHHHT---TTCEEEEECSCHHHHHSSCCCT--------TEEEECCCTTSCCSCTTCBSEE
T ss_pred             CCCCCCEEEEEcCcc-cHHHHHHHh---CCCEEEEEeCCHHHHHHHHhcc--------CCEEEECchhhCCCCCCCEeEE
Confidence            457889999999996 667788887   8899999999999988876642        6999999998877655689999


Q ss_pred             ehhhhccCChhHHHHHHHHHHhhccCCcEEEEee
Q 042119          207 FLAALVGMSKEEKLTILGHIRKYMKDGGILLVRS  240 (286)
Q Consensus       207 ~~aalvg~~~~~k~~vl~~l~~~l~pgg~lv~r~  240 (286)
                      +....+++ .++..++++++.+.|| ||.+++-+
T Consensus        99 ~~~~~l~~-~~~~~~~l~~~~~~Lk-gG~~~~~~  130 (261)
T 3ege_A           99 ISILAIHH-FSHLEKSFQEMQRIIR-DGTIVLLT  130 (261)
T ss_dssp             EEESCGGG-CSSHHHHHHHHHHHBC-SSCEEEEE
T ss_pred             EEcchHhh-ccCHHHHHHHHHHHhC-CcEEEEEE
Confidence            97654422 2577789999999999 99776655

>1ixk_A Methyltransferase; open beta sheet; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.38

Probab=99.36  E-value=4.8e-12  Score=116.99  Aligned_cols=111  Identities=22%  Similarity=0.214  Sum_probs=86.2

Q ss_pred             CCCCCCEEEEeccCCChhhHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEccccchhhcCCCccee
Q 042119          127 GVVQPKKVAFVGSGPMPLTSIIMAKHHLTSTHFDNFDIDEAANDVARSIVASDAEFEGRMKFLTRDIMEVKEQLGEYDCI  206 (286)
Q Consensus       127 ~~~~~~~VL~IG~G~lp~tai~lA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~g~l~~~i~f~~~D~~~~~~~l~~fD~V  206 (286)
                      .+.++.+|||+||||++.| +.+|+....+++|+++|+|+.+++.+++++++.| + .+++++++|+.+++...+.||+|
T Consensus       115 ~~~~g~~VLDlg~G~G~~t-~~la~~~~~~~~v~avD~s~~~l~~a~~~~~~~g-~-~~v~~~~~D~~~~~~~~~~fD~I  191 (315)
T 1ixk_A          115 DPKPGEIVADMAAAPGGKT-SYLAQLMRNDGVIYAFDVDENRLRETRLNLSRLG-V-LNVILFHSSSLHIGELNVEFDKI  191 (315)
T ss_dssp             CCCTTCEEEECCSSCSHHH-HHHHHHTTTCSEEEEECSCHHHHHHHHHHHHHHT-C-CSEEEESSCGGGGGGGCCCEEEE
T ss_pred             CCCCCCEEEEeCCCCCHHH-HHHHHHhCCCCEEEEEcCCHHHHHHHHHHHHHhC-C-CeEEEEECChhhcccccccCCEE
Confidence            5678899999999997665 4566532346899999999999999999999999 4 47999999998876544579999


Q ss_pred             ehhhh---ccC---Chh---------------HHHHHHHHHHhhccCCcEEEEee
Q 042119          207 FLAAL---VGM---SKE---------------EKLTILGHIRKYMKDGGILLVRS  240 (286)
Q Consensus       207 ~~aal---vg~---~~~---------------~k~~vl~~l~~~l~pgg~lv~r~  240 (286)
                      ++++-   .|+   +.+               ...++++++.+.|||||++++.+
T Consensus       192 l~d~Pcsg~g~~~~~p~~~~~~~~~~~~~~~~~q~~~L~~~~~~LkpGG~lv~st  246 (315)
T 1ixk_A          192 LLDAPCTGSGTIHKNPERKWNRTMDDIKFCQGLQMRLLEKGLEVLKPGGILVYST  246 (315)
T ss_dssp             EEECCTTSTTTCC--------CCHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred             EEeCCCCCcccccCChhHhhcCCHHHHHHHHHHHHHHHHHHHHhCCCCCEEEEEe
Confidence            97531   111   111               12589999999999999999964

>1mjf_A Spermidine synthase; spermidine synthetase, structural genomics, PSI, protein structure initiative; 1.80A {Pyrococcus furiosus} SCOP: c.66.1.17 PDB: 2e5w_A* 2zsu_A*

Probab=99.36  E-value=1.5e-12  Score=118.46  Aligned_cols=107  Identities=17%  Similarity=0.227  Sum_probs=83.3

Q ss_pred             CCCCEEEEeccCCChhhHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhc--CCC--------CCCeEEEEccccchhh
Q 042119          129 VQPKKVAFVGSGPMPLTSIIMAKHHLTSTHFDNFDIDEAANDVARSIVASD--AEF--------EGRMKFLTRDIMEVKE  198 (286)
Q Consensus       129 ~~~~~VL~IG~G~lp~tai~lA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~--g~l--------~~~i~f~~~D~~~~~~  198 (286)
                      ..+++||+||||+ |..+..+++ + +..+|+++|+|+++++.|++.+ ..  + +        ..+++++++|+.+...
T Consensus        74 ~~~~~VLdiG~G~-G~~~~~l~~-~-~~~~v~~vDid~~~i~~ar~~~-~~~~~-l~~~~~~~~~~~v~~~~~D~~~~l~  148 (281)
T 1mjf_A           74 PKPKRVLVIGGGD-GGTVREVLQ-H-DVDEVIMVEIDEDVIMVSKDLI-KIDNG-LLEAMLNGKHEKAKLTIGDGFEFIK  148 (281)
T ss_dssp             SCCCEEEEEECTT-SHHHHHHTT-S-CCSEEEEEESCHHHHHHHHHHT-CTTTT-HHHHHHTTCCSSEEEEESCHHHHHH
T ss_pred             CCCCeEEEEcCCc-CHHHHHHHh-C-CCCEEEEEECCHHHHHHHHHHH-hhccc-cccccccCCCCcEEEEECchHHHhc
Confidence            4678999999996 677788887 3 6789999999999999999987 44  3 2        4689999999977543


Q ss_pred             cCCCcceeehhhhccCCh-hH--HHHHHHHHHhhccCCcEEEEee
Q 042119          199 QLGEYDCIFLAALVGMSK-EE--KLTILGHIRKYMKDGGILLVRS  240 (286)
Q Consensus       199 ~l~~fD~V~~aalvg~~~-~~--k~~vl~~l~~~l~pgg~lv~r~  240 (286)
                      ..+.||+|+.+..-.... ..  ..++++.+.+.|+|||++++..
T Consensus       149 ~~~~fD~Ii~d~~~~~~~~~~l~~~~~l~~~~~~L~pgG~lv~~~  193 (281)
T 1mjf_A          149 NNRGFDVIIADSTDPVGPAKVLFSEEFYRYVYDALNNPGIYVTQA  193 (281)
T ss_dssp             HCCCEEEEEEECCCCC-----TTSHHHHHHHHHHEEEEEEEEEEE
T ss_pred             ccCCeeEEEECCCCCCCcchhhhHHHHHHHHHHhcCCCcEEEEEc
Confidence            335799999875421111 11  2579999999999999999975

>3ajd_A Putative methyltransferase MJ0026; tRNA, M5C, rossmann fold, structural genomics, riken structu genomics/proteomics initiative; 1.27A {Methanocaldococcus jannaschii} PDB: 3a4t_A

Probab=99.35  E-value=4.1e-12  Score=114.88  Aligned_cols=110  Identities=13%  Similarity=0.100  Sum_probs=86.5

Q ss_pred             CCCCCCEEEEeccCCChhhHHHHHhhcCCC-cEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEccccchhhc----CC
Q 042119          127 GVVQPKKVAFVGSGPMPLTSIIMAKHHLTS-THFDNFDIDEAANDVARSIVASDAEFEGRMKFLTRDIMEVKEQ----LG  201 (286)
Q Consensus       127 ~~~~~~~VL~IG~G~lp~tai~lA~~~~~g-~~V~~iDid~~ai~~Ar~~~~~~g~l~~~i~f~~~D~~~~~~~----l~  201 (286)
                      .+.++.+|||+||||++.|. .+|+ ..++ ++|+++|+|+.+++.+++++++.| + .+++++++|+.++...    .+
T Consensus        80 ~~~~g~~VLDlgaG~G~~t~-~la~-~~~~~~~v~avD~~~~~l~~~~~~~~~~g-~-~~v~~~~~D~~~~~~~~~~~~~  155 (274)
T 3ajd_A           80 NPREDDFILDMCAAPGGKTT-HLAQ-LMKNKGTIVAVEISKTRTKALKSNINRMG-V-LNTIIINADMRKYKDYLLKNEI  155 (274)
T ss_dssp             CCCTTCEEEETTCTTCHHHH-HHHH-HTTTCSEEEEEESCHHHHHHHHHHHHHTT-C-CSEEEEESCHHHHHHHHHHTTC
T ss_pred             CCCCcCEEEEeCCCccHHHH-HHHH-HcCCCCEEEEECCCHHHHHHHHHHHHHhC-C-CcEEEEeCChHhcchhhhhccc
Confidence            45788999999999977664 4555 2455 899999999999999999999999 4 4899999999887652    45


Q ss_pred             Ccceeehhhhc---cCC--------------hhHHHHHHHHHHhhccCCcEEEEee
Q 042119          202 EYDCIFLAALV---GMS--------------KEEKLTILGHIRKYMKDGGILLVRS  240 (286)
Q Consensus       202 ~fD~V~~aalv---g~~--------------~~~k~~vl~~l~~~l~pgg~lv~r~  240 (286)
                      .||.|+.++--   |.-              .+...++++++.+.|||||++++.+
T Consensus       156 ~fD~Vl~d~Pcs~~g~~~~~p~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lv~st  211 (274)
T 3ajd_A          156 FFDKILLDAPCSGNIIKDKNRNVSEEDIKYCSLRQKELIDIGIDLLKKDGELVYST  211 (274)
T ss_dssp             CEEEEEEEECCC------------HHHHTGGGTCHHHHHHHHHHHEEEEEEEEEEE
T ss_pred             cCCEEEEcCCCCCCcccccCCCCCHHHHHHHHHHHHHHHHHHHHhCCCCCEEEEEE
Confidence            79999976311   110              0234689999999999999999965

>3iv6_A Putative Zn-dependent alcohol dehydrogenase; alpha/beta fold, rossmann-fold, structural genomics, PSI-2, structure initiative; HET: SAM; 2.70A {Rhodobacter sphaeroides}

Probab=99.35  E-value=4.5e-12  Score=114.91  Aligned_cols=107  Identities=14%  Similarity=0.195  Sum_probs=78.7

Q ss_pred             hcCCCCCCEEEEeccCCChhhHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEccccchhhc-CCCc
Q 042119          125 ENGVVQPKKVAFVGSGPMPLTSIIMAKHHLTSTHFDNFDIDEAANDVARSIVASDAEFEGRMKFLTRDIMEVKEQ-LGEY  203 (286)
Q Consensus       125 ~~~~~~~~~VL~IG~G~lp~tai~lA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~g~l~~~i~f~~~D~~~~~~~-l~~f  203 (286)
                      .....++.+|||||||+ |..++.+|+   .|++|+++|+|++|++.|++.+....   -.+.+...+.. ...+ .+.|
T Consensus        40 ~l~l~~g~~VLDlGcGt-G~~a~~La~---~g~~V~gvD~S~~ml~~Ar~~~~~~~---v~~~~~~~~~~-~~~~~~~~f  111 (261)
T 3iv6_A           40 LENIVPGSTVAVIGAST-RFLIEKALE---RGASVTVFDFSQRMCDDLAEALADRC---VTIDLLDITAE-IPKELAGHF  111 (261)
T ss_dssp             TTTCCTTCEEEEECTTC-HHHHHHHHH---TTCEEEEEESCHHHHHHHHHHTSSSC---CEEEECCTTSC-CCGGGTTCC
T ss_pred             hcCCCCcCEEEEEeCcc-hHHHHHHHh---cCCEEEEEECCHHHHHHHHHHHHhcc---ceeeeeecccc-cccccCCCc
Confidence            44567889999999996 777888998   68999999999999999999854331   12233222210 0112 2479


Q ss_pred             ceeehhhhc-cCChhHHHHHHHHHHhhccCCcEEEEee
Q 042119          204 DCIFLAALV-GMSKEEKLTILGHIRKYMKDGGILLVRS  240 (286)
Q Consensus       204 D~V~~aalv-g~~~~~k~~vl~~l~~~l~pgg~lv~r~  240 (286)
                      |+|+....+ .+..++...++.++.+.+ |||++++..
T Consensus       112 D~Vv~~~~l~~~~~~~~~~~l~~l~~lL-PGG~l~lS~  148 (261)
T 3iv6_A          112 DFVLNDRLINRFTTEEARRACLGMLSLV-GSGTVRASV  148 (261)
T ss_dssp             SEEEEESCGGGSCHHHHHHHHHHHHHHH-TTSEEEEEE
T ss_pred             cEEEEhhhhHhCCHHHHHHHHHHHHHhC-cCcEEEEEe
Confidence            999976554 346677788999999999 999999864

>3bgv_A MRNA CAP guanine-N7 methyltransferase; alternative splicing, mRNA capping, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: SAH; 2.30A {Homo sapiens} PDB: 3epp_A*

Probab=99.35  E-value=6.6e-12  Score=114.78  Aligned_cols=110  Identities=14%  Similarity=0.053  Sum_probs=83.2

Q ss_pred             CCCCEEEEeccCCChhhHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCC-----CCCCeEEEEccccchh----hc
Q 042119          129 VQPKKVAFVGSGPMPLTSIIMAKHHLTSTHFDNFDIDEAANDVARSIVASDAE-----FEGRMKFLTRDIMEVK----EQ  199 (286)
Q Consensus       129 ~~~~~VL~IG~G~lp~tai~lA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~g~-----l~~~i~f~~~D~~~~~----~~  199 (286)
                      .++.+|||||||++.++ ..+++  .++.+|+++|+|+++++.|++.....+.     ...+++|+++|+.+.+    ..
T Consensus        33 ~~~~~VLDlGcG~G~~~-~~l~~--~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~  109 (313)
T 3bgv_A           33 KRDITVLDLGCGKGGDL-LKWKK--GRINKLVCTDIADVSVKQCQQRYEDMKNRRDSEYIFSAEFITADSSKELLIDKFR  109 (313)
T ss_dssp             --CCEEEEETCTTTTTH-HHHHH--TTCSEEEEEESCHHHHHHHHHHHHHHHSSSCC-CCCEEEEEECCTTTSCSTTTCS
T ss_pred             CCCCEEEEECCCCcHHH-HHHHh--cCCCEEEEEeCCHHHHHHHHHHHHHhhhcccccccceEEEEEecccccchhhhcc
Confidence            47789999999975554 55665  2688999999999999999998876520     1247999999998764    21


Q ss_pred             --CCCcceeehhhhccC---ChhHHHHHHHHHHhhccCCcEEEEeec
Q 042119          200 --LGEYDCIFLAALVGM---SKEEKLTILGHIRKYMKDGGILLVRSA  241 (286)
Q Consensus       200 --l~~fD~V~~aalvg~---~~~~k~~vl~~l~~~l~pgg~lv~r~~  241 (286)
                        .+.||+|+....+++   +.++...++.++.+.|+|||.+++...
T Consensus       110 ~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~~~~~LkpgG~li~~~~  156 (313)
T 3bgv_A          110 DPQMCFDICSCQFVCHYSFESYEQADMMLRNACERLSPGGYFIGTTP  156 (313)
T ss_dssp             STTCCEEEEEEETCGGGGGGSHHHHHHHHHHHHTTEEEEEEEEEEEE
T ss_pred             cCCCCEEEEEEecchhhccCCHHHHHHHHHHHHHHhCCCcEEEEecC
Confidence              237999986544322   445667999999999999999998753

>2vdv_E TRNA (guanine-N(7)-)-methyltransferase; S-adenosyl-L-methionine, phosphorylation, M7G, spout MT, tRNA processing; HET: SAM; 2.30A {Saccharomyces cerevisiae} PDB: 2vdu_E

Probab=99.35  E-value=4.5e-12  Score=112.32  Aligned_cols=108  Identities=15%  Similarity=0.205  Sum_probs=81.3

Q ss_pred             CCCCEEEEeccCCChhhHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhc--------CCCCCCeEEEEccccc-hh--
Q 042119          129 VQPKKVAFVGSGPMPLTSIIMAKHHLTSTHFDNFDIDEAANDVARSIVASD--------AEFEGRMKFLTRDIME-VK--  197 (286)
Q Consensus       129 ~~~~~VL~IG~G~lp~tai~lA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~--------g~l~~~i~f~~~D~~~-~~--  197 (286)
                      .++.+|||||||+ |..++.+|+ ..++.+|+|+|+|+.+++.|++.++..        | + .+++++++|+.+ ++  
T Consensus        48 ~~~~~vLDiGcG~-G~~~~~la~-~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~-~-~nv~~~~~D~~~~l~~~  123 (246)
T 2vdv_E           48 TKKVTIADIGCGF-GGLMIDLSP-AFPEDLILGMEIRVQVTNYVEDRIIALRNNTASKHG-F-QNINVLRGNAMKFLPNF  123 (246)
T ss_dssp             SCCEEEEEETCTT-SHHHHHHHH-HSTTSEEEEEESCHHHHHHHHHHHHHHHHTC-CCST-T-TTEEEEECCTTSCGGGT
T ss_pred             CCCCEEEEEcCCC-CHHHHHHHH-hCCCCCEEEEEcCHHHHHHHHHHHHHHhhccccccC-C-CcEEEEeccHHHHHHHh
Confidence            5778999999997 555677777 367889999999999999999998876        7 3 589999999987 33  


Q ss_pred             hcCCCcceeehhhhccCChhH-------HHHHHHHHHhhccCCcEEEEee
Q 042119          198 EQLGEYDCIFLAALVGMSKEE-------KLTILGHIRKYMKDGGILLVRS  240 (286)
Q Consensus       198 ~~l~~fD~V~~aalvg~~~~~-------k~~vl~~l~~~l~pgg~lv~r~  240 (286)
                      .+...||.|++..--.+.+..       ..+++..+.+.|+|||.+++.+
T Consensus       124 ~~~~~~d~v~~~~p~p~~k~~~~~~r~~~~~~l~~~~~~LkpgG~l~~~t  173 (246)
T 2vdv_E          124 FEKGQLSKMFFCFPDPHFKQRKHKARIITNTLLSEYAYVLKEGGVVYTIT  173 (246)
T ss_dssp             SCTTCEEEEEEESCCCC------CSSCCCHHHHHHHHHHEEEEEEEEEEE
T ss_pred             ccccccCEEEEECCCcccccchhHHhhccHHHHHHHHHHcCCCCEEEEEe
Confidence            233568888743210110000       0379999999999999999864

>1dl5_A Protein-L-isoaspartate O-methyltransferase; isoaspartyl residues, protein repair, deamidation, post-translational modification; HET: SAH; 1.80A {Thermotoga maritima} SCOP: c.66.1.7 d.197.1.1

Probab=99.34  E-value=5.4e-12  Score=116.27  Aligned_cols=106  Identities=17%  Similarity=0.189  Sum_probs=83.7

Q ss_pred             hcCCCCCCEEEEeccCCChhhHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEccccchhhcCCCcc
Q 042119          125 ENGVVQPKKVAFVGSGPMPLTSIIMAKHHLTSTHFDNFDIDEAANDVARSIVASDAEFEGRMKFLTRDIMEVKEQLGEYD  204 (286)
Q Consensus       125 ~~~~~~~~~VL~IG~G~lp~tai~lA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~g~l~~~i~f~~~D~~~~~~~l~~fD  204 (286)
                      ...+.++.+|||||||+ |..++.+|+....+.+|+++|+|+++++.|++.++..| + .+++|+++|+.+.....+.||
T Consensus        70 ~l~~~~~~~VLDiGcG~-G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~g-~-~~v~~~~~d~~~~~~~~~~fD  146 (317)
T 1dl5_A           70 WVGLDKGMRVLEIGGGT-GYNAAVMSRVVGEKGLVVSVEYSRKICEIAKRNVERLG-I-ENVIFVCGDGYYGVPEFSPYD  146 (317)
T ss_dssp             HTTCCTTCEEEEECCTT-SHHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHTT-C-CSEEEEESCGGGCCGGGCCEE
T ss_pred             hcCCCCcCEEEEecCCc-hHHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHHHHcC-C-CCeEEEECChhhccccCCCeE
Confidence            44567889999999997 56667788742225789999999999999999999999 4 459999999987544446899


Q ss_pred             eeehhhhccCChhHHHHHHHHHHhhccCCcEEEEee
Q 042119          205 CIFLAALVGMSKEEKLTILGHIRKYMKDGGILLVRS  240 (286)
Q Consensus       205 ~V~~aalvg~~~~~k~~vl~~l~~~l~pgg~lv~r~  240 (286)
                      +|+.......-       .+.+.+.|||||++++..
T Consensus       147 ~Iv~~~~~~~~-------~~~~~~~LkpgG~lvi~~  175 (317)
T 1dl5_A          147 VIFVTVGVDEV-------PETWFTQLKEGGRVIVPI  175 (317)
T ss_dssp             EEEECSBBSCC-------CHHHHHHEEEEEEEEEEB
T ss_pred             EEEEcCCHHHH-------HHHHHHhcCCCcEEEEEE
Confidence            99977654221       146888999999999965

>1g8a_A Fibrillarin-like PRE-rRNA processing protein; rRNA binding, RNA binding, structural genomics, BSGC structure funded by NIH; 1.40A {Pyrococcus horikoshii} SCOP: c.66.1.3 PDB: 2nnw_B 3nmu_F* 3nvk_I* 3nvm_B 1pry_A

Probab=99.34  E-value=4e-12  Score=110.60  Aligned_cols=107  Identities=14%  Similarity=0.141  Sum_probs=82.3

Q ss_pred             cCCCCCCEEEEeccCCChhhHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEccccchh--hcC-CC
Q 042119          126 NGVVQPKKVAFVGSGPMPLTSIIMAKHHLTSTHFDNFDIDEAANDVARSIVASDAEFEGRMKFLTRDIMEVK--EQL-GE  202 (286)
Q Consensus       126 ~~~~~~~~VL~IG~G~lp~tai~lA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~g~l~~~i~f~~~D~~~~~--~~l-~~  202 (286)
                      ..+.++.+|||+|||+ |..++.+|++..++.+|+++|+|+++++.+++.++..    .+++|+++|+.+..  ..+ +.
T Consensus        69 ~~~~~~~~vLDlG~G~-G~~~~~la~~~~~~~~v~~vD~s~~~~~~~~~~~~~~----~~v~~~~~d~~~~~~~~~~~~~  143 (227)
T 1g8a_A           69 FPIKPGKSVLYLGIAS-GTTASHVSDIVGWEGKIFGIEFSPRVLRELVPIVEER----RNIVPILGDATKPEEYRALVPK  143 (227)
T ss_dssp             CCCCTTCEEEEETTTS-TTHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHSSC----TTEEEEECCTTCGGGGTTTCCC
T ss_pred             cCCCCCCEEEEEeccC-CHHHHHHHHHhCCCeEEEEEECCHHHHHHHHHHHhcc----CCCEEEEccCCCcchhhcccCC
Confidence            3357889999999997 6677888874345689999999999999999987643    57999999997732  122 46


Q ss_pred             cceeehhhhccCChhHHHHHHHHHHhhccCCcEEEEee
Q 042119          203 YDCIFLAALVGMSKEEKLTILGHIRKYMKDGGILLVRS  240 (286)
Q Consensus       203 fD~V~~aalvg~~~~~k~~vl~~l~~~l~pgg~lv~r~  240 (286)
                      ||+|+.+..   .......++.++.+.|+|||.+++..
T Consensus       144 ~D~v~~~~~---~~~~~~~~l~~~~~~LkpgG~l~~~~  178 (227)
T 1g8a_A          144 VDVIFEDVA---QPTQAKILIDNAEVYLKRGGYGMIAV  178 (227)
T ss_dssp             EEEEEECCC---STTHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred             ceEEEECCC---CHhHHHHHHHHHHHhcCCCCEEEEEE
Confidence            999996543   12333455999999999999998863

>4dcm_A Ribosomal RNA large subunit methyltransferase G; 23S rRNA (guanine1835-N2)-methyltransferase; HET: SAM; 2.30A {Escherichia coli}

Probab=99.33  E-value=4.6e-12  Score=120.15  Aligned_cols=112  Identities=13%  Similarity=0.164  Sum_probs=86.2

Q ss_pred             hcCCCCCCEEEEeccCCChhhHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCC--CeEEEEccccchhhcCCC
Q 042119          125 ENGVVQPKKVAFVGSGPMPLTSIIMAKHHLTSTHFDNFDIDEAANDVARSIVASDAEFEG--RMKFLTRDIMEVKEQLGE  202 (286)
Q Consensus       125 ~~~~~~~~~VL~IG~G~lp~tai~lA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~g~l~~--~i~f~~~D~~~~~~~l~~  202 (286)
                      .....++.+|||+|||+ |..++.+++ ..|+.+|+++|+|+.+++.|++++...| +.+  +++|+++|+.+. ...+.
T Consensus       217 ~l~~~~~~~VLDlGcG~-G~~s~~la~-~~p~~~V~gvD~s~~al~~Ar~n~~~ng-l~~~~~v~~~~~D~~~~-~~~~~  292 (375)
T 4dcm_A          217 HLPENLEGEIVDLGCGN-GVIGLTLLD-KNPQAKVVFVDESPMAVASSRLNVETNM-PEALDRCEFMINNALSG-VEPFR  292 (375)
T ss_dssp             TCCCSCCSEEEEETCTT-CHHHHHHHH-HCTTCEEEEEESCHHHHHHHHHHHHHHC-GGGGGGEEEEECSTTTT-CCTTC
T ss_pred             hCcccCCCeEEEEeCcc-hHHHHHHHH-HCCCCEEEEEECcHHHHHHHHHHHHHcC-CCcCceEEEEechhhcc-CCCCC
Confidence            34445668999999996 566677887 4789999999999999999999999988 554  588999999762 23347


Q ss_pred             cceeehhhhcc----CChhHHHHHHHHHHhhccCCcEEEEee
Q 042119          203 YDCIFLAALVG----MSKEEKLTILGHIRKYMKDGGILLVRS  240 (286)
Q Consensus       203 fD~V~~aalvg----~~~~~k~~vl~~l~~~l~pgg~lv~r~  240 (286)
                      ||+|+..-..+    .......++++++.+.|+|||.+++..
T Consensus       293 fD~Ii~nppfh~~~~~~~~~~~~~l~~~~~~LkpgG~l~iv~  334 (375)
T 4dcm_A          293 FNAVLCNPPFHQQHALTDNVAWEMFHHARRCLKINGELYIVA  334 (375)
T ss_dssp             EEEEEECCCC-------CCHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred             eeEEEECCCcccCcccCHHHHHHHHHHHHHhCCCCcEEEEEE
Confidence            99998643221    112344579999999999999998854

>2o07_A Spermidine synthase; structural genomics, structural genomics consortium, SGC, transferase; HET: SPD MTA; 1.89A {Homo sapiens} SCOP: c.66.1.17 PDB: 2o06_A* 2o05_A* 2o0l_A* 3rw9_A*

Probab=99.33  E-value=3.4e-12  Score=117.77  Aligned_cols=109  Identities=19%  Similarity=0.280  Sum_probs=83.7

Q ss_pred             CCCCEEEEeccCCChhhHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHh--cCCC-CCCeEEEEccccchhhc-CCCcc
Q 042119          129 VQPKKVAFVGSGPMPLTSIIMAKHHLTSTHFDNFDIDEAANDVARSIVAS--DAEF-EGRMKFLTRDIMEVKEQ-LGEYD  204 (286)
Q Consensus       129 ~~~~~VL~IG~G~lp~tai~lA~~~~~g~~V~~iDid~~ai~~Ar~~~~~--~g~l-~~~i~f~~~D~~~~~~~-l~~fD  204 (286)
                      ..+++||+||||. |..+..+++ +.+..+|+++|+|+++++.|++.+..  .| + ..+++++++|+.+.... .+.||
T Consensus        94 ~~~~~VLdiG~G~-G~~~~~l~~-~~~~~~v~~vDid~~~i~~ar~~~~~~~~~-~~~~rv~v~~~Da~~~l~~~~~~fD  170 (304)
T 2o07_A           94 PNPRKVLIIGGGD-GGVLREVVK-HPSVESVVQCEIDEDVIQVSKKFLPGMAIG-YSSSKLTLHVGDGFEFMKQNQDAFD  170 (304)
T ss_dssp             SSCCEEEEEECTT-SHHHHHHTT-CTTCCEEEEEESCHHHHHHHHHHCHHHHGG-GGCTTEEEEESCHHHHHHTCSSCEE
T ss_pred             CCCCEEEEECCCc-hHHHHHHHH-cCCCCEEEEEECCHHHHHHHHHHhHHhhcc-cCCCcEEEEECcHHHHHhhCCCCce
Confidence            5679999999996 677788887 35678999999999999999998765  24 3 47899999999875432 35799


Q ss_pred             eeehhhhccCCh---hHHHHHHHHHHhhccCCcEEEEee
Q 042119          205 CIFLAALVGMSK---EEKLTILGHIRKYMKDGGILLVRS  240 (286)
Q Consensus       205 ~V~~aalvg~~~---~~k~~vl~~l~~~l~pgg~lv~r~  240 (286)
                      +|+.+..-....   ....++++++.+.|+|||++++..
T Consensus       171 ~Ii~d~~~~~~~~~~l~~~~~l~~~~~~LkpgG~lv~~~  209 (304)
T 2o07_A          171 VIITDSSDPMGPAESLFKESYYQLMKTALKEDGVLCCQG  209 (304)
T ss_dssp             EEEEECC-----------CHHHHHHHHHEEEEEEEEEEE
T ss_pred             EEEECCCCCCCcchhhhHHHHHHHHHhccCCCeEEEEec
Confidence            999875421111   123578999999999999999976

>2i7c_A Spermidine synthase; transferase, structural genomics consor; HET: AAT 1PG; 1.71A {Plasmodium falciparum} PDB: 2hte_A* 3b7p_A* 3rie_A* 2pwp_A*

Probab=99.33  E-value=3.1e-12  Score=116.57  Aligned_cols=112  Identities=20%  Similarity=0.273  Sum_probs=85.4

Q ss_pred             CCCCCEEEEeccCCChhhHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCC-C-CCCeEEEEccccchhhc-CCCcc
Q 042119          128 VVQPKKVAFVGSGPMPLTSIIMAKHHLTSTHFDNFDIDEAANDVARSIVASDAE-F-EGRMKFLTRDIMEVKEQ-LGEYD  204 (286)
Q Consensus       128 ~~~~~~VL~IG~G~lp~tai~lA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~g~-l-~~~i~f~~~D~~~~~~~-l~~fD  204 (286)
                      ...+++||+||||. |..+..+++ +.++.+|+++|+|+++++.|++.+...+. + ..+++++++|+.+.... .+.||
T Consensus        76 ~~~~~~VLdiG~G~-G~~~~~l~~-~~~~~~v~~vDid~~~i~~a~~~~~~~~~~~~~~~v~~~~~D~~~~l~~~~~~fD  153 (283)
T 2i7c_A           76 SKEPKNVLVVGGGD-GGIIRELCK-YKSVENIDICEIDETVIEVSKIYFKNISCGYEDKRVNVFIEDASKFLENVTNTYD  153 (283)
T ss_dssp             SSSCCEEEEEECTT-SHHHHHHTT-CTTCCEEEEEESCHHHHHHHHHHCTTTSGGGGSTTEEEEESCHHHHHHHCCSCEE
T ss_pred             CCCCCeEEEEeCCc-CHHHHHHHH-cCCCCEEEEEECCHHHHHHHHHHhHHhccccCCCcEEEEECChHHHHHhCCCCce
Confidence            35679999999996 666677777 45678999999999999999998764320 1 36899999999875433 35799


Q ss_pred             eeehhhhccCChhHH---HHHHHHHHhhccCCcEEEEeec
Q 042119          205 CIFLAALVGMSKEEK---LTILGHIRKYMKDGGILLVRSA  241 (286)
Q Consensus       205 ~V~~aalvg~~~~~k---~~vl~~l~~~l~pgg~lv~r~~  241 (286)
                      +|+.+..-.......   .++++.+.+.|+|||++++...
T Consensus       154 ~Ii~d~~~~~~~~~~l~~~~~l~~~~~~L~pgG~lv~~~~  193 (283)
T 2i7c_A          154 VIIVDSSDPIGPAETLFNQNFYEKIYNALKPNGYCVAQCE  193 (283)
T ss_dssp             EEEEECCCTTTGGGGGSSHHHHHHHHHHEEEEEEEEEECC
T ss_pred             EEEEcCCCCCCcchhhhHHHHHHHHHHhcCCCcEEEEECC
Confidence            999865422211222   5899999999999999999753

>3bwc_A Spermidine synthase; SAM, SGPP, structura genomics, PSI, protein structure initiative, structural GEN pathogenic protozoa consortium; HET: MSE SAM; 2.30A {Trypanosoma cruzi} PDB: 3bwb_A*

Probab=99.33  E-value=3.5e-12  Score=117.34  Aligned_cols=111  Identities=17%  Similarity=0.195  Sum_probs=83.7

Q ss_pred             CCCCEEEEeccCCChhhHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhc--CCCCCCeEEEEccccchhhc--CCCcc
Q 042119          129 VQPKKVAFVGSGPMPLTSIIMAKHHLTSTHFDNFDIDEAANDVARSIVASD--AEFEGRMKFLTRDIMEVKEQ--LGEYD  204 (286)
Q Consensus       129 ~~~~~VL~IG~G~lp~tai~lA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~--g~l~~~i~f~~~D~~~~~~~--l~~fD  204 (286)
                      ..+++||+||||. |..+..+++ +.+..+|+++|+|+++++.|++.+...  +....+++++++|+.+....  .+.||
T Consensus        94 ~~~~~VLdiG~G~-G~~~~~l~~-~~~~~~v~~vDid~~~i~~a~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~~~~~fD  171 (304)
T 3bwc_A           94 PKPERVLIIGGGD-GGVLREVLR-HGTVEHCDLVDIDGEVMEQSKQHFPQISRSLADPRATVRVGDGLAFVRQTPDNTYD  171 (304)
T ss_dssp             SSCCEEEEEECTT-SHHHHHHHT-CTTCCEEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEESCHHHHHHSSCTTCEE
T ss_pred             CCCCeEEEEcCCC-CHHHHHHHh-CCCCCEEEEEECCHHHHHHHHHHhHHhhcccCCCcEEEEECcHHHHHHhccCCcee
Confidence            5779999999996 666777777 356789999999999999999987421  11246899999999887653  35799


Q ss_pred             eeehhhhccCChhH-H--HHHHHHHHhhccCCcEEEEeec
Q 042119          205 CIFLAALVGMSKEE-K--LTILGHIRKYMKDGGILLVRSA  241 (286)
Q Consensus       205 ~V~~aalvg~~~~~-k--~~vl~~l~~~l~pgg~lv~r~~  241 (286)
                      +|+.+......... .  .++++++.+.|+|||++++...
T Consensus       172 vIi~d~~~~~~~~~~l~~~~~l~~~~~~LkpgG~lv~~~~  211 (304)
T 3bwc_A          172 VVIIDTTDPAGPASKLFGEAFYKDVLRILKPDGICCNQGE  211 (304)
T ss_dssp             EEEEECC---------CCHHHHHHHHHHEEEEEEEEEEEC
T ss_pred             EEEECCCCccccchhhhHHHHHHHHHHhcCCCcEEEEecC
Confidence            99986543211111 1  5799999999999999999754

>1iy9_A Spermidine synthase; rossmann fold, structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.30A {Bacillus subtilis} SCOP: c.66.1.17

Probab=99.33  E-value=3.4e-12  Score=115.95  Aligned_cols=111  Identities=19%  Similarity=0.243  Sum_probs=84.9

Q ss_pred             CCCCEEEEeccCCChhhHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhc--CCC-CCCeEEEEccccchhhc-CCCcc
Q 042119          129 VQPKKVAFVGSGPMPLTSIIMAKHHLTSTHFDNFDIDEAANDVARSIVASD--AEF-EGRMKFLTRDIMEVKEQ-LGEYD  204 (286)
Q Consensus       129 ~~~~~VL~IG~G~lp~tai~lA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~--g~l-~~~i~f~~~D~~~~~~~-l~~fD  204 (286)
                      ..+++||+||||. |..+..+++ +.+..+|+++|+|+++++.|++.+...  + + .++++++++|+.+.... -+.||
T Consensus        74 ~~~~~VLdiG~G~-G~~~~~l~~-~~~~~~v~~vEid~~~v~~ar~~~~~~~~~-~~~~rv~v~~~D~~~~l~~~~~~fD  150 (275)
T 1iy9_A           74 PNPEHVLVVGGGD-GGVIREILK-HPSVKKATLVDIDGKVIEYSKKFLPSIAGK-LDDPRVDVQVDDGFMHIAKSENQYD  150 (275)
T ss_dssp             SSCCEEEEESCTT-CHHHHHHTT-CTTCSEEEEEESCHHHHHHHHHHCHHHHTT-TTSTTEEEEESCSHHHHHTCCSCEE
T ss_pred             CCCCEEEEECCch-HHHHHHHHh-CCCCceEEEEECCHHHHHHHHHHhHhhccc-cCCCceEEEECcHHHHHhhCCCCee
Confidence            4679999999995 667777777 345689999999999999999987542  3 3 46999999999875433 24799


Q ss_pred             eeehhhhccCChh---HHHHHHHHHHhhccCCcEEEEeecC
Q 042119          205 CIFLAALVGMSKE---EKLTILGHIRKYMKDGGILLVRSAK  242 (286)
Q Consensus       205 ~V~~aalvg~~~~---~k~~vl~~l~~~l~pgg~lv~r~~~  242 (286)
                      +|+.+..-.....   -..++++.+.+.|+|||++++....
T Consensus       151 ~Ii~d~~~~~~~~~~l~~~~~~~~~~~~L~pgG~lv~~~~~  191 (275)
T 1iy9_A          151 VIMVDSTEPVGPAVNLFTKGFYAGIAKALKEDGIFVAQTDN  191 (275)
T ss_dssp             EEEESCSSCCSCCCCCSTTHHHHHHHHHEEEEEEEEEECCC
T ss_pred             EEEECCCCCCCcchhhhHHHHHHHHHHhcCCCcEEEEEcCC
Confidence            9998754311111   0257999999999999999998643

>1uir_A Polyamine aminopropyltransferase; spermidien synthase, spermine synthase, riken STR genomics/proteomics initiative, RSGI; 2.00A {Thermus thermophilus} SCOP: c.66.1.17 PDB: 3anx_A*

Probab=99.32  E-value=3.9e-12  Score=117.62  Aligned_cols=150  Identities=17%  Similarity=0.174  Sum_probs=100.5

Q ss_pred             CCCCEEEEeccCCChhhHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhc--CCC-CCCeEEEEccccchhh-cCCCcc
Q 042119          129 VQPKKVAFVGSGPMPLTSIIMAKHHLTSTHFDNFDIDEAANDVARSIVASD--AEF-EGRMKFLTRDIMEVKE-QLGEYD  204 (286)
Q Consensus       129 ~~~~~VL~IG~G~lp~tai~lA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~--g~l-~~~i~f~~~D~~~~~~-~l~~fD  204 (286)
                      ..+++||+||||. |..+..+++ +.++.+|+++|+|+++++.|++.+...  |.+ ..+++++++|+.+... ..+.||
T Consensus        76 ~~~~~VLdiG~G~-G~~~~~l~~-~~~~~~v~~vDid~~~i~~ar~~~~~~~~~~~~~~~v~~~~~D~~~~l~~~~~~fD  153 (314)
T 1uir_A           76 PEPKRVLIVGGGE-GATLREVLK-HPTVEKAVMVDIDGELVEVAKRHMPEWHQGAFDDPRAVLVIDDARAYLERTEERYD  153 (314)
T ss_dssp             SCCCEEEEEECTT-SHHHHHHTT-STTCCEEEEEESCHHHHHHHHHHCHHHHTTGGGCTTEEEEESCHHHHHHHCCCCEE
T ss_pred             CCCCeEEEEcCCc-CHHHHHHHh-cCCCCEEEEEECCHHHHHHHHHHhHhhccccccCCceEEEEchHHHHHHhcCCCcc
Confidence            5678999999996 667777887 456789999999999999999987652  101 3689999999987533 335799


Q ss_pred             eeehhhhccC---Ch-hH--HHHHHHHHHhhccCCcEEEEeecCcceeeeccc-CCc--ccc-cCcE---EEEEecCccc
Q 042119          205 CIFLAALVGM---SK-EE--KLTILGHIRKYMKDGGILLVRSAKGARAFLYPV-VVE--HDL-LDFE---VLSAVHPNDD  271 (286)
Q Consensus       205 ~V~~aalvg~---~~-~~--k~~vl~~l~~~l~pgg~lv~r~~~g~r~~lyp~-v~~--~~l-~gf~---~~~~~~P~~~  271 (286)
                      +|+.+.....   .. +.  ..++++.+.+.|+|||++++.......  ..+. ...  ..+ .-|.   ......|..+
T Consensus       154 ~Ii~d~~~~~~~~~~~~~l~~~~~l~~~~~~LkpgG~lv~~~~~~~~--~~~~~~~~~~~~l~~~F~~v~~~~~~vP~~~  231 (314)
T 1uir_A          154 VVIIDLTDPVGEDNPARLLYTVEFYRLVKAHLNPGGVMGMQTGMILL--THHRVHPVVHRTVREAFRYVRSYKNHIPGFF  231 (314)
T ss_dssp             EEEEECCCCBSTTCGGGGGSSHHHHHHHHHTEEEEEEEEEEEEEECC-----CHHHHHHHHHHTTCSEEEEEEEEEGGGT
T ss_pred             EEEECCCCcccccCcchhccHHHHHHHHHHhcCCCcEEEEEccCccc--cCHHHHHHHHHHHHHHCCceEEEEEecCCCC
Confidence            9998754322   11 11  368999999999999999997532110  0010 000  011 1232   2334457766


Q ss_pred             ceeeeEEEeec
Q 042119          272 VINSVVLVRNS  282 (286)
Q Consensus       272 vinsvi~~r~~  282 (286)
                      -.|.++++.|+
T Consensus       232 g~~~~~~as~~  242 (314)
T 1uir_A          232 LNFGFLLASDA  242 (314)
T ss_dssp             EEEEEEEEESS
T ss_pred             CeEEEEEEECC
Confidence            56778888774

>2b3t_A Protein methyltransferase HEMK; translation termination, methylation, conformational changes; HET: SAH; 3.10A {Escherichia coli} SCOP: c.66.1.30 PDB: 1t43_A*

Probab=99.32  E-value=7.8e-12  Score=112.57  Aligned_cols=107  Identities=17%  Similarity=0.221  Sum_probs=84.6

Q ss_pred             CCCCEEEEeccCCChhhHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEccccchhhcCCCcceeeh
Q 042119          129 VQPKKVAFVGSGPMPLTSIIMAKHHLTSTHFDNFDIDEAANDVARSIVASDAEFEGRMKFLTRDIMEVKEQLGEYDCIFL  208 (286)
Q Consensus       129 ~~~~~VL~IG~G~lp~tai~lA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~g~l~~~i~f~~~D~~~~~~~l~~fD~V~~  208 (286)
                      .++.+|||||||+ |..++.+++ ..++++|+++|+|+++++.|+++++..| + .+++|+++|+.+... .+.||+|+.
T Consensus       108 ~~~~~vLDlG~Gs-G~~~~~la~-~~~~~~v~~vD~s~~~l~~a~~n~~~~~-~-~~v~~~~~d~~~~~~-~~~fD~Iv~  182 (276)
T 2b3t_A          108 EQPCRILDLGTGT-GAIALALAS-ERPDCEIIAVDRMPDAVSLAQRNAQHLA-I-KNIHILQSDWFSALA-GQQFAMIVS  182 (276)
T ss_dssp             SSCCEEEEETCTT-SHHHHHHHH-HCTTSEEEEECSSHHHHHHHHHHHHHHT-C-CSEEEECCSTTGGGT-TCCEEEEEE
T ss_pred             cCCCEEEEecCCc-cHHHHHHHH-hCCCCEEEEEECCHHHHHHHHHHHHHcC-C-CceEEEEcchhhhcc-cCCccEEEE
Confidence            5678999999997 556677776 3689999999999999999999999999 4 479999999976432 357999986


Q ss_pred             hhh-ccC------------C-----------hhHHHHHHHHHHhhccCCcEEEEee
Q 042119          209 AAL-VGM------------S-----------KEEKLTILGHIRKYMKDGGILLVRS  240 (286)
Q Consensus       209 aal-vg~------------~-----------~~~k~~vl~~l~~~l~pgg~lv~r~  240 (286)
                      ..- ++.            .           .....++++++.+.|+|||.+++..
T Consensus       183 npPy~~~~~~~l~~~v~~~~p~~al~~~~~g~~~~~~~l~~~~~~LkpgG~l~~~~  238 (276)
T 2b3t_A          183 NPPYIDEQDPHLQQGDVRFEPLTALVAADSGMADIVHIIEQSRNALVSGGFLLLEH  238 (276)
T ss_dssp             CCCCBCTTCHHHHSSGGGSSCSTTTBCHHHHTHHHHHHHHHHGGGEEEEEEEEEEC
T ss_pred             CCCCCCccccccChhhhhcCcHHHHcCCCcHHHHHHHHHHHHHHhcCCCCEEEEEE
Confidence            410 100            0           0345789999999999999999864

>2igt_A SAM dependent methyltransferase; alpha-beta sandwich, beta-barrel, structural genomics, PSI-2 structure initiative; HET: MSE SAM GOL; 1.89A {Agrobacterium tumefaciens str} SCOP: c.66.1.51

Probab=99.32  E-value=6.7e-12  Score=117.17  Aligned_cols=107  Identities=18%  Similarity=0.190  Sum_probs=84.5

Q ss_pred             CCCCEEEEeccCCChhhHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCC-CeEEEEccccchhhc----CCCc
Q 042119          129 VQPKKVAFVGSGPMPLTSIIMAKHHLTSTHFDNFDIDEAANDVARSIVASDAEFEG-RMKFLTRDIMEVKEQ----LGEY  203 (286)
Q Consensus       129 ~~~~~VL~IG~G~lp~tai~lA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~g~l~~-~i~f~~~D~~~~~~~----l~~f  203 (286)
                      .++.+|||+|||++ ..++.+|+   .|++|+++|+|+.+++.|+++++..| +.+ +++|+++|+.+....    ...|
T Consensus       152 ~~~~~VLDlgcGtG-~~sl~la~---~ga~V~~VD~s~~al~~a~~n~~~~g-l~~~~v~~i~~D~~~~l~~~~~~~~~f  226 (332)
T 2igt_A          152 DRPLKVLNLFGYTG-VASLVAAA---AGAEVTHVDASKKAIGWAKENQVLAG-LEQAPIRWICEDAMKFIQREERRGSTY  226 (332)
T ss_dssp             SSCCEEEEETCTTC-HHHHHHHH---TTCEEEEECSCHHHHHHHHHHHHHHT-CTTSCEEEECSCHHHHHHHHHHHTCCB
T ss_pred             CCCCcEEEcccccC-HHHHHHHH---cCCEEEEEECCHHHHHHHHHHHHHcC-CCccceEEEECcHHHHHHHHHhcCCCc
Confidence            46789999999975 55677777   57799999999999999999999999 555 599999999886543    3579


Q ss_pred             ceeehhhh-ccC--------ChhHHHHHHHHHHhhccCCcEEEEee
Q 042119          204 DCIFLAAL-VGM--------SKEEKLTILGHIRKYMKDGGILLVRS  240 (286)
Q Consensus       204 D~V~~aal-vg~--------~~~~k~~vl~~l~~~l~pgg~lv~r~  240 (286)
                      |+|+++-- .+.        ..++..++++.+.+.|+|||.+++..
T Consensus       227 D~Ii~dPP~~~~~~~~~~~~~~~~~~~ll~~~~~~LkpgG~lli~~  272 (332)
T 2igt_A          227 DIILTDPPKFGRGTHGEVWQLFDHLPLMLDICREILSPKALGLVLT  272 (332)
T ss_dssp             SEEEECCCSEEECTTCCEEEHHHHHHHHHHHHHHTBCTTCCEEEEE
T ss_pred             eEEEECCccccCCchHHHHHHHHHHHHHHHHHHHhcCcCcEEEEEE
Confidence            99987421 111        12456789999999999999977654

>2pt6_A Spermidine synthase; transferase, structural genomics consor SGC,dcadoMet complex; HET: S4M 1PG; 2.00A {Plasmodium falciparum} PDB: 2pss_A* 2pt9_A*

Probab=99.32  E-value=4.8e-12  Score=117.60  Aligned_cols=111  Identities=20%  Similarity=0.281  Sum_probs=84.9

Q ss_pred             CCCCEEEEeccCCChhhHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhc--CCC-CCCeEEEEccccchhh-cCCCcc
Q 042119          129 VQPKKVAFVGSGPMPLTSIIMAKHHLTSTHFDNFDIDEAANDVARSIVASD--AEF-EGRMKFLTRDIMEVKE-QLGEYD  204 (286)
Q Consensus       129 ~~~~~VL~IG~G~lp~tai~lA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~--g~l-~~~i~f~~~D~~~~~~-~l~~fD  204 (286)
                      ..+++||+||||+ |..+..+++ +.++.+|+++|+|+++++.|++.+...  + + .++++++++|+.+... ..+.||
T Consensus       115 ~~~~~VLdiG~G~-G~~~~~l~~-~~~~~~v~~vDis~~~l~~ar~~~~~~~~~-~~~~~v~~~~~D~~~~l~~~~~~fD  191 (321)
T 2pt6_A          115 KEPKNVLVVGGGD-GGIIRELCK-YKSVENIDICEIDETVIEVSKIYFKNISCG-YEDKRVNVFIEDASKFLENVTNTYD  191 (321)
T ss_dssp             SSCCEEEEEECTT-CHHHHHHTT-CTTCCEEEEEESCHHHHHHHHHHCTTTSGG-GGSTTEEEEESCHHHHHHHCCSCEE
T ss_pred             CCCCEEEEEcCCc-cHHHHHHHH-cCCCCEEEEEECCHHHHHHHHHHHHhhccc-cCCCcEEEEEccHHHHHhhcCCCce
Confidence            4678999999996 666777877 456899999999999999999987652  2 2 3689999999977543 235799


Q ss_pred             eeehhhhccCCh-hH--HHHHHHHHHhhccCCcEEEEeecC
Q 042119          205 CIFLAALVGMSK-EE--KLTILGHIRKYMKDGGILLVRSAK  242 (286)
Q Consensus       205 ~V~~aalvg~~~-~~--k~~vl~~l~~~l~pgg~lv~r~~~  242 (286)
                      +|+.+..-.... ..  ..++++.+.+.|+|||++++....
T Consensus       192 vIi~d~~~p~~~~~~l~~~~~l~~~~~~LkpgG~lv~~~~~  232 (321)
T 2pt6_A          192 VIIVDSSDPIGPAETLFNQNFYEKIYNALKPNGYCVAQCES  232 (321)
T ss_dssp             EEEEECCCSSSGGGGGSSHHHHHHHHHHEEEEEEEEEEECC
T ss_pred             EEEECCcCCCCcchhhhHHHHHHHHHHhcCCCcEEEEEcCC
Confidence            999765321111 11  158999999999999999997543

>2aot_A HMT, histamine N-methyltransferase; classic methyltransferase fold, protein-drug complex; HET: CSO 2PM SAH; 1.90A {Homo sapiens} SCOP: c.66.1.19 PDB: 1jqd_A* 2aou_A* 2aov_A* 2aox_A* 1jqe_A* 2aow_A*

Probab=99.31  E-value=3e-12  Score=116.07  Aligned_cols=108  Identities=12%  Similarity=0.187  Sum_probs=78.2

Q ss_pred             CCCCEEEEeccCCChhhHHHH---HhhcCCCcEE--EEEeCChHHHHHHHHHHHhc-CCCCCCeE--EEEccccchhh--
Q 042119          129 VQPKKVAFVGSGPMPLTSIIM---AKHHLTSTHF--DNFDIDEAANDVARSIVASD-AEFEGRMK--FLTRDIMEVKE--  198 (286)
Q Consensus       129 ~~~~~VL~IG~G~lp~tai~l---A~~~~~g~~V--~~iDid~~ai~~Ar~~~~~~-g~l~~~i~--f~~~D~~~~~~--  198 (286)
                      .++.+|||||||++.+|...+   +. ..++.+|  +++|+|++|++.|++.++.. + + .+++  +..+|+.++..  
T Consensus        51 ~~~~~VLDiG~GtG~~~~~~l~~l~~-~~~~~~v~~~~vD~S~~ml~~a~~~~~~~~~-~-~~v~~~~~~~~~~~~~~~~  127 (292)
T 2aot_A           51 KSEIKILSIGGGAGEIDLQILSKVQA-QYPGVCINNEVVEPSAEQIAKYKELVAKTSN-L-ENVKFAWHKETSSEYQSRM  127 (292)
T ss_dssp             CSEEEEEEETCTTSHHHHHHHHHHHH-HSTTCEEEEEEECSCHHHHHHHHHHHHTCSS-C-TTEEEEEECSCHHHHHHHH
T ss_pred             CCCCeEEEEcCCCCHHHHHHHHHHHh-hCCCceeeEEEEeCCHHHHHHHHHHHHhccC-C-CcceEEEEecchhhhhhhh
Confidence            567899999999865553222   22 2467755  99999999999999998764 4 2 4454  55677765542  


Q ss_pred             ----cCCCcceeehhhhccCChhHHHHHHHHHHhhccCCcEEEEee
Q 042119          199 ----QLGEYDCIFLAALVGMSKEEKLTILGHIRKYMKDGGILLVRS  240 (286)
Q Consensus       199 ----~l~~fD~V~~aalvg~~~~~k~~vl~~l~~~l~pgg~lv~r~  240 (286)
                          ..+.||+|+....++ +.++..+++++++++|||||.+++..
T Consensus       128 ~~~~~~~~fD~V~~~~~l~-~~~d~~~~l~~~~r~LkpgG~l~i~~  172 (292)
T 2aot_A          128 LEKKELQKWDFIHMIQMLY-YVKDIPATLKFFHSLLGTNAKMLIIV  172 (292)
T ss_dssp             HTTTCCCCEEEEEEESCGG-GCSCHHHHHHHHHHTEEEEEEEEEEE
T ss_pred             ccccCCCceeEEEEeeeee-ecCCHHHHHHHHHHHcCCCcEEEEEE
Confidence                245799998664432 23567789999999999999998854

>2y1w_A Histone-arginine methyltransferase CARM1; histone modification; HET: SFG 849; 2.10A {Homo sapiens} PDB: 2y1x_A* 3b3f_A* 3b3g_A 2v74_B* 2v7e_A

Probab=99.31  E-value=8.7e-12  Score=116.63  Aligned_cols=107  Identities=21%  Similarity=0.249  Sum_probs=84.1

Q ss_pred             CCCCCCEEEEeccCCChhhHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEccccchhhcCCCccee
Q 042119          127 GVVQPKKVAFVGSGPMPLTSIIMAKHHLTSTHFDNFDIDEAANDVARSIVASDAEFEGRMKFLTRDIMEVKEQLGEYDCI  206 (286)
Q Consensus       127 ~~~~~~~VL~IG~G~lp~tai~lA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~g~l~~~i~f~~~D~~~~~~~l~~fD~V  206 (286)
                      ...++++|||||||+ |..++.+|+  .+..+|+++|+|+ +++.|++.++..| +.++++++++|+.+++.+ +.||+|
T Consensus        47 ~~~~~~~VLDiGcGt-G~ls~~la~--~g~~~V~~vD~s~-~~~~a~~~~~~~~-l~~~v~~~~~d~~~~~~~-~~~D~I  120 (348)
T 2y1w_A           47 TDFKDKIVLDVGCGS-GILSFFAAQ--AGARKIYAVEAST-MAQHAEVLVKSNN-LTDRIVVIPGKVEEVSLP-EQVDII  120 (348)
T ss_dssp             GGTTTCEEEEETCTT-SHHHHHHHH--TTCSEEEEEECST-HHHHHHHHHHHTT-CTTTEEEEESCTTTCCCS-SCEEEE
T ss_pred             ccCCcCEEEEcCCCc-cHHHHHHHh--CCCCEEEEECCHH-HHHHHHHHHHHcC-CCCcEEEEEcchhhCCCC-CceeEE
Confidence            346789999999997 455677777  2456999999996 8899999999999 788999999999876433 479999


Q ss_pred             ehhhhc-cCChhHHHHHHHHHHhhccCCcEEEEe
Q 042119          207 FLAALV-GMSKEEKLTILGHIRKYMKDGGILLVR  239 (286)
Q Consensus       207 ~~aalv-g~~~~~k~~vl~~l~~~l~pgg~lv~r  239 (286)
                      +..... .+..+...+.+.++.+.|+|||++++.
T Consensus       121 vs~~~~~~~~~~~~~~~l~~~~~~LkpgG~li~~  154 (348)
T 2y1w_A          121 ISEPMGYMLFNERMLESYLHAKKYLKPSGNMFPT  154 (348)
T ss_dssp             EECCCBTTBTTTSHHHHHHHGGGGEEEEEEEESC
T ss_pred             EEeCchhcCChHHHHHHHHHHHhhcCCCeEEEEe
Confidence            865332 223345567888999999999999854

>2avn_A Ubiquinone/menaquinone biosynthesis methyltransfe related protein; ubiquinone/menaquinone biosynthesis methyltransferase-relate protein; HET: SAI; 2.35A {Thermotoga maritima} SCOP: c.66.1.41

Probab=99.31  E-value=5.2e-12  Score=112.38  Aligned_cols=98  Identities=16%  Similarity=0.253  Sum_probs=77.8

Q ss_pred             CCCEEEEeccCCChhhHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEccccchhhcCCCcceeehh
Q 042119          130 QPKKVAFVGSGPMPLTSIIMAKHHLTSTHFDNFDIDEAANDVARSIVASDAEFEGRMKFLTRDIMEVKEQLGEYDCIFLA  209 (286)
Q Consensus       130 ~~~~VL~IG~G~lp~tai~lA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~g~l~~~i~f~~~D~~~~~~~l~~fD~V~~a  209 (286)
                      ++.+|||||||+ |..+..+++   .|.+|+|+|+|+++++.|++...      .  .++++|+.+++...+.||+|+..
T Consensus        54 ~~~~vLDiGcG~-G~~~~~l~~---~~~~v~gvD~s~~~l~~a~~~~~------~--~~~~~d~~~~~~~~~~fD~v~~~  121 (260)
T 2avn_A           54 NPCRVLDLGGGT-GKWSLFLQE---RGFEVVLVDPSKEMLEVAREKGV------K--NVVEAKAEDLPFPSGAFEAVLAL  121 (260)
T ss_dssp             SCCEEEEETCTT-CHHHHHHHT---TTCEEEEEESCHHHHHHHHHHTC------S--CEEECCTTSCCSCTTCEEEEEEC
T ss_pred             CCCeEEEeCCCc-CHHHHHHHH---cCCeEEEEeCCHHHHHHHHhhcC------C--CEEECcHHHCCCCCCCEEEEEEc
Confidence            788999999996 566677877   47899999999999999998732      1  28999998876555679999865


Q ss_pred             h-hccCChhHHHHHHHHHHhhccCCcEEEEee
Q 042119          210 A-LVGMSKEEKLTILGHIRKYMKDGGILLVRS  240 (286)
Q Consensus       210 a-lvg~~~~~k~~vl~~l~~~l~pgg~lv~r~  240 (286)
                      . +..+. ++..++++++.+.|+|||.+++..
T Consensus       122 ~~~~~~~-~~~~~~l~~~~~~LkpgG~l~~~~  152 (260)
T 2avn_A          122 GDVLSYV-ENKDKAFSEIRRVLVPDGLLIATV  152 (260)
T ss_dssp             SSHHHHC-SCHHHHHHHHHHHEEEEEEEEEEE
T ss_pred             chhhhcc-ccHHHHHHHHHHHcCCCeEEEEEe
Confidence            3 22221 347789999999999999999864

>1g6q_1 HnRNP arginine N-methyltransferase; SAM-binding domain, beta-barrel, mixed alpha-beta, hexamer; 2.90A {Saccharomyces cerevisiae} SCOP: c.66.1.6

Probab=99.31  E-value=6.8e-12  Score=116.43  Aligned_cols=105  Identities=22%  Similarity=0.340  Sum_probs=83.6

Q ss_pred             CCCCEEEEeccCCChhhHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEccccchhhcCCCcceeeh
Q 042119          129 VQPKKVAFVGSGPMPLTSIIMAKHHLTSTHFDNFDIDEAANDVARSIVASDAEFEGRMKFLTRDIMEVKEQLGEYDCIFL  208 (286)
Q Consensus       129 ~~~~~VL~IG~G~lp~tai~lA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~g~l~~~i~f~~~D~~~~~~~l~~fD~V~~  208 (286)
                      .++++|||||||+ |..++.+|++  +..+|+++|+| ++++.|++.++..| +.++++++++|+.+++.+.+.||+|+.
T Consensus        37 ~~~~~VLDiGcGt-G~ls~~la~~--g~~~v~~vD~s-~~~~~a~~~~~~~~-~~~~i~~~~~d~~~~~~~~~~~D~Ivs  111 (328)
T 1g6q_1           37 FKDKIVLDVGCGT-GILSMFAAKH--GAKHVIGVDMS-SIIEMAKELVELNG-FSDKITLLRGKLEDVHLPFPKVDIIIS  111 (328)
T ss_dssp             HTTCEEEEETCTT-SHHHHHHHHT--CCSEEEEEESS-THHHHHHHHHHHTT-CTTTEEEEESCTTTSCCSSSCEEEEEE
T ss_pred             cCCCEEEEecCcc-HHHHHHHHHC--CCCEEEEEChH-HHHHHHHHHHHHcC-CCCCEEEEECchhhccCCCCcccEEEE
Confidence            5678999999997 5566778772  34599999999 59999999999999 788999999999887655467999986


Q ss_pred             hhhc--cCChhHHHHHHHHHHhhccCCcEEEE
Q 042119          209 AALV--GMSKEEKLTILGHIRKYMKDGGILLV  238 (286)
Q Consensus       209 aalv--g~~~~~k~~vl~~l~~~l~pgg~lv~  238 (286)
                      ..+.  ....+....++..+.+.|+|||.++.
T Consensus       112 ~~~~~~l~~~~~~~~~l~~~~~~LkpgG~li~  143 (328)
T 1g6q_1          112 EWMGYFLLYESMMDTVLYARDHYLVEGGLIFP  143 (328)
T ss_dssp             CCCBTTBSTTCCHHHHHHHHHHHEEEEEEEES
T ss_pred             eCchhhcccHHHHHHHHHHHHhhcCCCeEEEE
Confidence            4221  11234566799999999999999973

>1vbf_A 231AA long hypothetical protein-L-isoaspartate O- methyltransferase; trimeric coiled coil assembly; 2.80A {Sulfolobus tokodaii} SCOP: c.66.1.7

Probab=99.30  E-value=1e-11  Score=107.92  Aligned_cols=102  Identities=20%  Similarity=0.260  Sum_probs=79.8

Q ss_pred             hcCCCCCCEEEEeccCCChhhHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEccccchhhcCCCcc
Q 042119          125 ENGVVQPKKVAFVGSGPMPLTSIIMAKHHLTSTHFDNFDIDEAANDVARSIVASDAEFEGRMKFLTRDIMEVKEQLGEYD  204 (286)
Q Consensus       125 ~~~~~~~~~VL~IG~G~lp~tai~lA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~g~l~~~i~f~~~D~~~~~~~l~~fD  204 (286)
                      .....++.+||+||||+ |..+..+++   .+.+|+++|+|+++++.|++.+...|    +++++++|+.+.....+.||
T Consensus        65 ~~~~~~~~~vLdiG~G~-G~~~~~l~~---~~~~v~~vD~~~~~~~~a~~~~~~~~----~v~~~~~d~~~~~~~~~~fD  136 (231)
T 1vbf_A           65 ELDLHKGQKVLEIGTGI-GYYTALIAE---IVDKVVSVEINEKMYNYASKLLSYYN----NIKLILGDGTLGYEEEKPYD  136 (231)
T ss_dssp             HTTCCTTCEEEEECCTT-SHHHHHHHH---HSSEEEEEESCHHHHHHHHHHHTTCS----SEEEEESCGGGCCGGGCCEE
T ss_pred             hcCCCCCCEEEEEcCCC-CHHHHHHHH---HcCEEEEEeCCHHHHHHHHHHHhhcC----CeEEEECCcccccccCCCcc
Confidence            34567889999999997 666677877   34899999999999999999876654    79999999977333335799


Q ss_pred             eeehhhhccCChhHHHHHHHHHHhhccCCcEEEEeec
Q 042119          205 CIFLAALVGMSKEEKLTILGHIRKYMKDGGILLVRSA  241 (286)
Q Consensus       205 ~V~~aalvg~~~~~k~~vl~~l~~~l~pgg~lv~r~~  241 (286)
                      +|+.......       +.+++.+.|+|||++++...
T Consensus       137 ~v~~~~~~~~-------~~~~~~~~L~pgG~l~~~~~  166 (231)
T 1vbf_A          137 RVVVWATAPT-------LLCKPYEQLKEGGIMILPIG  166 (231)
T ss_dssp             EEEESSBBSS-------CCHHHHHTEEEEEEEEEEEC
T ss_pred             EEEECCcHHH-------HHHHHHHHcCCCcEEEEEEc
Confidence            9997765421       22468899999999998764

>1inl_A Spermidine synthase; beta-barrel, rossman fold, structural genomics, PSI, protein structure initiative; 1.50A {Thermotoga maritima} SCOP: c.66.1.17 PDB: 1jq3_A*

Probab=99.30  E-value=6.5e-12  Score=115.21  Aligned_cols=110  Identities=18%  Similarity=0.214  Sum_probs=82.6

Q ss_pred             CCCCEEEEeccCCChhhHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHh--cCCC-CCCeEEEEccccchhhc-CCCcc
Q 042119          129 VQPKKVAFVGSGPMPLTSIIMAKHHLTSTHFDNFDIDEAANDVARSIVAS--DAEF-EGRMKFLTRDIMEVKEQ-LGEYD  204 (286)
Q Consensus       129 ~~~~~VL~IG~G~lp~tai~lA~~~~~g~~V~~iDid~~ai~~Ar~~~~~--~g~l-~~~i~f~~~D~~~~~~~-l~~fD  204 (286)
                      ..+++||+||||+ |..+..+++ +.+..+|+++|+|+++++.|++.+..  .+ + .++++++++|+.+.... .+.||
T Consensus        89 ~~~~~VLdiG~G~-G~~~~~l~~-~~~~~~v~~vDid~~~~~~a~~~~~~~~~~-~~~~~v~~~~~D~~~~l~~~~~~fD  165 (296)
T 1inl_A           89 PNPKKVLIIGGGD-GGTLREVLK-HDSVEKAILCEVDGLVIEAARKYLKQTSCG-FDDPRAEIVIANGAEYVRKFKNEFD  165 (296)
T ss_dssp             SSCCEEEEEECTT-CHHHHHHTT-STTCSEEEEEESCHHHHHHHHHHCHHHHGG-GGCTTEEEEESCHHHHGGGCSSCEE
T ss_pred             CCCCEEEEEcCCc-CHHHHHHHh-cCCCCEEEEEECCHHHHHHHHHHhHhhccc-cCCCceEEEECcHHHHHhhCCCCce
Confidence            4578999999996 666777777 35678999999999999999998764  23 2 36899999999775432 34799


Q ss_pred             eeehhhhcc-CChh---HHHHHHHHHHhhccCCcEEEEeec
Q 042119          205 CIFLAALVG-MSKE---EKLTILGHIRKYMKDGGILLVRSA  241 (286)
Q Consensus       205 ~V~~aalvg-~~~~---~k~~vl~~l~~~l~pgg~lv~r~~  241 (286)
                      +|+.+..-. ....   ...++++.+.+.|+|||++++...
T Consensus       166 ~Ii~d~~~~~~~~~~~l~~~~~l~~~~~~LkpgG~lv~~~~  206 (296)
T 1inl_A          166 VIIIDSTDPTAGQGGHLFTEEFYQACYDALKEDGVFSAETE  206 (296)
T ss_dssp             EEEEEC----------CCSHHHHHHHHHHEEEEEEEEEECC
T ss_pred             EEEEcCCCcccCchhhhhHHHHHHHHHHhcCCCcEEEEEcc
Confidence            999764311 0000   125799999999999999999754

>3dmg_A Probable ribosomal RNA small subunit methyltransf; monomethyltranserase, 16S rRNA methyltransferase, N2 G1207 methyltransferase; HET: SAH; 1.55A {Thermus thermophilus} PDB: 3dmf_A* 3dmh_A* 2zul_A* 2zwv_A*

Probab=99.30  E-value=9.1e-12  Score=118.41  Aligned_cols=105  Identities=15%  Similarity=0.209  Sum_probs=86.5

Q ss_pred             CCCCEEEEeccCCChhhHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEccccchhhcCCCcceeeh
Q 042119          129 VQPKKVAFVGSGPMPLTSIIMAKHHLTSTHFDNFDIDEAANDVARSIVASDAEFEGRMKFLTRDIMEVKEQLGEYDCIFL  208 (286)
Q Consensus       129 ~~~~~VL~IG~G~lp~tai~lA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~g~l~~~i~f~~~D~~~~~~~l~~fD~V~~  208 (286)
                      .++.+|||+|||+ |..++.+++   .+++|+++|+|+.+++.|++++...| +  +++|+++|+.+...+.+.||+|+.
T Consensus       232 ~~~~~VLDlGcG~-G~~~~~la~---~g~~V~gvDis~~al~~A~~n~~~~~-~--~v~~~~~D~~~~~~~~~~fD~Ii~  304 (381)
T 3dmg_A          232 VRGRQVLDLGAGY-GALTLPLAR---MGAEVVGVEDDLASVLSLQKGLEANA-L--KAQALHSDVDEALTEEARFDIIVT  304 (381)
T ss_dssp             TTTCEEEEETCTT-STTHHHHHH---TTCEEEEEESBHHHHHHHHHHHHHTT-C--CCEEEECSTTTTSCTTCCEEEEEE
T ss_pred             CCCCEEEEEeeeC-CHHHHHHHH---cCCEEEEEECCHHHHHHHHHHHHHcC-C--CeEEEEcchhhccccCCCeEEEEE
Confidence            4678999999996 666778887   47899999999999999999999988 3  499999999886655468999996


Q ss_pred             hhhcc----CChhHHHHHHHHHHhhccCCcEEEEee
Q 042119          209 AALVG----MSKEEKLTILGHIRKYMKDGGILLVRS  240 (286)
Q Consensus       209 aalvg----~~~~~k~~vl~~l~~~l~pgg~lv~r~  240 (286)
                      .....    ...+...++++++.+.|+|||.+++..
T Consensus       305 npp~~~~~~~~~~~~~~~l~~~~~~LkpGG~l~iv~  340 (381)
T 3dmg_A          305 NPPFHVGGAVILDVAQAFVNVAAARLRPGGVFFLVS  340 (381)
T ss_dssp             CCCCCTTCSSCCHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred             CCchhhcccccHHHHHHHHHHHHHhcCcCcEEEEEE
Confidence            53221    124667789999999999999999865

>1o9g_A RRNA methyltransferase; antibiotic resistance, Se-MAD; 1.5A {Streptomyces viridochromogenes} SCOP: c.66.1.29 PDB: 1o9h_A

Probab=99.29  E-value=3.5e-12  Score=113.02  Aligned_cols=109  Identities=13%  Similarity=0.116  Sum_probs=82.4

Q ss_pred             CCCCEEEEeccCCChhhHHHHHhhc-CCCcEEEEEeCChHHHHHHHHHHHhc---CCCCCC-------------------
Q 042119          129 VQPKKVAFVGSGPMPLTSIIMAKHH-LTSTHFDNFDIDEAANDVARSIVASD---AEFEGR-------------------  185 (286)
Q Consensus       129 ~~~~~VL~IG~G~lp~tai~lA~~~-~~g~~V~~iDid~~ai~~Ar~~~~~~---g~l~~~-------------------  185 (286)
                      .++.+|||+|||+ |..++.+++.. .++.+|+|+|+|+++++.|++.+...   | +..+                   
T Consensus        50 ~~~~~vLD~gcGs-G~~~~~la~~~~~~~~~v~gvDis~~~l~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~  127 (250)
T 1o9g_A           50 DGPVTLWDPCCGS-GYLLTVLGLLHRRSLRQVIASDVDPAPLELAAKNLALLSPAG-LTARELERREQSERFGKPSYLEA  127 (250)
T ss_dssp             CSCEEEEETTCTT-SHHHHHHHHHTGGGEEEEEEEESCHHHHHHHHHHHHTTSHHH-HHHHHHHHHHHHHHHCCHHHHHH
T ss_pred             CCCCeEEECCCCC-CHHHHHHHHHhccCCCeEEEEECCHHHHHHHHHHHHHhhhcc-ccccchhhhhhhhhcccccchhh
Confidence            4678999999997 56667777621 35789999999999999999988766   5 3333                   


Q ss_pred             ------eE-------------EEEccccchhh-----cCCCcceeehhhh-ccCC-------hhHHHHHHHHHHhhccCC
Q 042119          186 ------MK-------------FLTRDIMEVKE-----QLGEYDCIFLAAL-VGMS-------KEEKLTILGHIRKYMKDG  233 (286)
Q Consensus       186 ------i~-------------f~~~D~~~~~~-----~l~~fD~V~~aal-vg~~-------~~~k~~vl~~l~~~l~pg  233 (286)
                            ++             |.++|+.+...     .-..||+|+.... +...       .+....+++++.+.|+||
T Consensus       128 ~~~~~~v~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~fD~Iv~npp~~~~~~~~~~~~~~~~~~~l~~~~~~Lkpg  207 (250)
T 1o9g_A          128 AQAARRLRERLTAEGGALPCAIRTADVFDPRALSAVLAGSAPDVVLTDLPYGERTHWEGQVPGQPVAGLLRSLASALPAH  207 (250)
T ss_dssp             HHHHHHHHHHHHHTTSSCCEEEEECCTTCGGGHHHHHTTCCCSEEEEECCGGGSSSSSSCCCHHHHHHHHHHHHHHSCTT
T ss_pred             hhhhhhhhhhccccccccccceeecccccccccccccCCCCceEEEeCCCeeccccccccccccHHHHHHHHHHHhcCCC
Confidence                  77             99999977432     2237999986421 1111       356678999999999999


Q ss_pred             cEEEEe
Q 042119          234 GILLVR  239 (286)
Q Consensus       234 g~lv~r  239 (286)
                      |++++.
T Consensus       208 G~l~~~  213 (250)
T 1o9g_A          208 AVIAVT  213 (250)
T ss_dssp             CEEEEE
T ss_pred             cEEEEe
Confidence            999984

>3bzb_A Uncharacterized protein; RED ALGA, protein structure initiat center for eukaryotic structural genomics, CESG, structural genomics; 2.79A {Cyanidioschyzon merolae}

Probab=99.29  E-value=2.5e-11  Score=110.11  Aligned_cols=105  Identities=19%  Similarity=0.252  Sum_probs=76.8

Q ss_pred             CCCCEEEEeccCCChhhHHHHHhhcCCCc-EEEEEeC-ChHHHHHHHHHH-----HhcCCCC----CCeEEEEccccc--
Q 042119          129 VQPKKVAFVGSGPMPLTSIIMAKHHLTST-HFDNFDI-DEAANDVARSIV-----ASDAEFE----GRMKFLTRDIME--  195 (286)
Q Consensus       129 ~~~~~VL~IG~G~lp~tai~lA~~~~~g~-~V~~iDi-d~~ai~~Ar~~~-----~~~g~l~----~~i~f~~~D~~~--  195 (286)
                      .++++|||||||+ |..++.+|+   .|+ +|+++|+ |+++++.|++++     +..| +.    +++++...|..+  
T Consensus        78 ~~~~~vLDlG~G~-G~~~~~~a~---~~~~~v~~~D~s~~~~~~~a~~n~~~N~~~~~~-~~~~~~~~v~~~~~~~~~~~  152 (281)
T 3bzb_A           78 IAGKTVCELGAGA-GLVSIVAFL---AGADQVVATDYPDPEILNSLESNIREHTANSCS-SETVKRASPKVVPYRWGDSP  152 (281)
T ss_dssp             TTTCEEEETTCTT-SHHHHHHHH---TTCSEEEEEECSCHHHHHHHHHHHHTTCC-----------CCCEEEECCTTSCT
T ss_pred             cCCCeEEEecccc-cHHHHHHHH---cCCCEEEEEeCCCHHHHHHHHHHHHHhhhhhcc-cccCCCCCeEEEEecCCCcc
Confidence            5778999999996 667788887   345 9999999 899999999999     6666 44    579998666433  


Q ss_pred             --hhh--cCCCcceeehhhhccCChhHHHHHHHHHHhhcc---C--CcEEEEe
Q 042119          196 --VKE--QLGEYDCIFLAALVGMSKEEKLTILGHIRKYMK---D--GGILLVR  239 (286)
Q Consensus       196 --~~~--~l~~fD~V~~aalvg~~~~~k~~vl~~l~~~l~---p--gg~lv~r  239 (286)
                        +..  ..+.||+|+.+..+ .+.+....+++.+.+.|+   |  ||++++-
T Consensus       153 ~~~~~~~~~~~fD~Ii~~dvl-~~~~~~~~ll~~l~~~Lk~~~p~~gG~l~v~  204 (281)
T 3bzb_A          153 DSLQRCTGLQRFQVVLLADLL-SFHQAHDALLRSVKMLLALPANDPTAVALVT  204 (281)
T ss_dssp             HHHHHHHSCSSBSEEEEESCC-SCGGGHHHHHHHHHHHBCCTTTCTTCEEEEE
T ss_pred             HHHHhhccCCCCCEEEEeCcc-cChHHHHHHHHHHHHHhcccCCCCCCEEEEE
Confidence              221  13579999864333 335677889999999999   9  9987664

>2b25_A Hypothetical protein; structural genomics, methyl transferase, SAM, structural GEN consortium, SGC, transferase; HET: SAM; 2.50A {Homo sapiens} SCOP: c.66.1.13

Probab=99.27  E-value=8.1e-12  Score=115.68  Aligned_cols=107  Identities=20%  Similarity=0.275  Sum_probs=81.4

Q ss_pred             CCCCCCEEEEeccCCChhhHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcC------C---CCCCeEEEEccccchh
Q 042119          127 GVVQPKKVAFVGSGPMPLTSIIMAKHHLTSTHFDNFDIDEAANDVARSIVASDA------E---FEGRMKFLTRDIMEVK  197 (286)
Q Consensus       127 ~~~~~~~VL~IG~G~lp~tai~lA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~g------~---l~~~i~f~~~D~~~~~  197 (286)
                      .+.++++|||||||+ |..++.+|+...+..+|+++|+++++++.|+++++..|      .   +.++++|+++|+.+..
T Consensus       102 ~~~~g~~VLDiG~G~-G~~~~~la~~~g~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~ln~~~~~~~~v~~~~~d~~~~~  180 (336)
T 2b25_A          102 DINPGDTVLEAGSGS-GGMSLFLSKAVGSQGRVISFEVRKDHHDLAKKNYKHWRDSWKLSHVEEWPDNVDFIHKDISGAT  180 (336)
T ss_dssp             TCCTTCEEEEECCTT-SHHHHHHHHHHCTTCEEEEEESSHHHHHHHHHHHHHHHHHHTTTCSSCCCCCEEEEESCTTCCC
T ss_pred             CCCCCCEEEEeCCCc-CHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHHhhcccccccccccCCceEEEECChHHcc
Confidence            567899999999997 55667777732456899999999999999999988632      0   2368999999998753


Q ss_pred             hcC--CCcceeehhhhccCChhHHHHHHHHHHhhccCCcEEEEee
Q 042119          198 EQL--GEYDCIFLAALVGMSKEEKLTILGHIRKYMKDGGILLVRS  240 (286)
Q Consensus       198 ~~l--~~fD~V~~aalvg~~~~~k~~vl~~l~~~l~pgg~lv~r~  240 (286)
                      .++  +.||+|+.+..      ....+++++.+.|+|||.+++-.
T Consensus       181 ~~~~~~~fD~V~~~~~------~~~~~l~~~~~~LkpgG~lv~~~  219 (336)
T 2b25_A          181 EDIKSLTFDAVALDML------NPHVTLPVFYPHLKHGGVCAVYV  219 (336)
T ss_dssp             -------EEEEEECSS------STTTTHHHHGGGEEEEEEEEEEE
T ss_pred             cccCCCCeeEEEECCC------CHHHHHHHHHHhcCCCcEEEEEe
Confidence            222  46999997532      22348999999999999999865

>3htx_A HEN1; HEN1, small RNA methyltransferase, protein-RNA complex; HET: SAH; 3.10A {Arabidopsis thaliana}

Probab=99.27  E-value=6e-11  Score=121.97  Aligned_cols=109  Identities=11%  Similarity=0.104  Sum_probs=87.0

Q ss_pred             CCCCEEEEeccCCChhhHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhc------CCCCCCeEEEEccccchhhcCCC
Q 042119          129 VQPKKVAFVGSGPMPLTSIIMAKHHLTSTHFDNFDIDEAANDVARSIVASD------AEFEGRMKFLTRDIMEVKEQLGE  202 (286)
Q Consensus       129 ~~~~~VL~IG~G~lp~tai~lA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~------g~l~~~i~f~~~D~~~~~~~l~~  202 (286)
                      .++.+|||||||+ |..++.+|+...+..+|+|||+|+++++.|++.++..      |.  .+++|+++|+.+++...+.
T Consensus       720 ~~g~rVLDVGCGT-G~lai~LAr~g~p~a~VtGVDIS~emLe~AReRLa~~lnAkr~gl--~nVefiqGDa~dLp~~d~s  796 (950)
T 3htx_A          720 SSASTLVDFGCGS-GSLLDSLLDYPTSLQTIIGVDISPKGLARAAKMLHVKLNKEACNV--KSATLYDGSILEFDSRLHD  796 (950)
T ss_dssp             SCCSEEEEETCSS-SHHHHHHTSSCCCCCEEEEEESCHHHHHHHHHHHHHHTTTTCSSC--SEEEEEESCTTSCCTTSCS
T ss_pred             cCCCEEEEECCCC-CHHHHHHHHhCCCCCeEEEEECCHHHHHHHHHHhhhccchhhcCC--CceEEEECchHhCCcccCC
Confidence            4789999999996 6677888873114489999999999999999977643      42  5899999999988877678


Q ss_pred             cceeehhhhc-cCChhHHHHHHHHHHhhccCCcEEEEeec
Q 042119          203 YDCIFLAALV-GMSKEEKLTILGHIRKYMKDGGILLVRSA  241 (286)
Q Consensus       203 fD~V~~aalv-g~~~~~k~~vl~~l~~~l~pgg~lv~r~~  241 (286)
                      ||+|+....+ .++.+....+++++.+.|||| .+++.+.
T Consensus       797 FDlVV~~eVLeHL~dp~l~~~L~eI~RvLKPG-~LIISTP  835 (950)
T 3htx_A          797 VDIGTCLEVIEHMEEDQACEFGEKVLSLFHPK-LLIVSTP  835 (950)
T ss_dssp             CCEEEEESCGGGSCHHHHHHHHHHHHHTTCCS-EEEEEEC
T ss_pred             eeEEEEeCchhhCChHHHHHHHHHHHHHcCCC-EEEEEec
Confidence            9999876544 445556667999999999999 7777653

>3a27_A TYW2, uncharacterized protein MJ1557; wybutosine modification, transferase; HET: SAM; 2.00A {Methanocaldococcus jannaschii}

Probab=99.27  E-value=1e-11  Score=112.42  Aligned_cols=103  Identities=14%  Similarity=0.105  Sum_probs=84.0

Q ss_pred             CCCCCEEEEeccCCChhhHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEccccchhhcCCCcceee
Q 042119          128 VVQPKKVAFVGSGPMPLTSIIMAKHHLTSTHFDNFDIDEAANDVARSIVASDAEFEGRMKFLTRDIMEVKEQLGEYDCIF  207 (286)
Q Consensus       128 ~~~~~~VL~IG~G~lp~tai~lA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~g~l~~~i~f~~~D~~~~~~~l~~fD~V~  207 (286)
                      ..++++|||+|||++ .-++.+|+. .++++|+++|+++++++.|+++++..| + ++++|+++|+.+. .....||+|+
T Consensus       117 ~~~~~~VLDlgcG~G-~~s~~la~~-~~~~~V~~vD~s~~av~~a~~n~~~n~-l-~~~~~~~~d~~~~-~~~~~~D~Vi  191 (272)
T 3a27_A          117 SNENEVVVDMFAGIG-YFTIPLAKY-SKPKLVYAIEKNPTAYHYLCENIKLNK-L-NNVIPILADNRDV-ELKDVADRVI  191 (272)
T ss_dssp             CCTTCEEEETTCTTT-TTHHHHHHH-TCCSEEEEEECCHHHHHHHHHHHHHTT-C-SSEEEEESCGGGC-CCTTCEEEEE
T ss_pred             cCCCCEEEEecCcCC-HHHHHHHHh-CCCCEEEEEeCCHHHHHHHHHHHHHcC-C-CCEEEEECChHHc-CccCCceEEE
Confidence            578899999999975 556777773 457799999999999999999999998 4 5789999999887 3334799998


Q ss_pred             hhhhccCChhHHHHHHHHHHhhccCCcEEEEee
Q 042119          208 LAALVGMSKEEKLTILGHIRKYMKDGGILLVRS  240 (286)
Q Consensus       208 ~aalvg~~~~~k~~vl~~l~~~l~pgg~lv~r~  240 (286)
                      +...-     ...+++..+.+.|+|||++++..
T Consensus       192 ~d~p~-----~~~~~l~~~~~~LkpgG~l~~s~  219 (272)
T 3a27_A          192 MGYVH-----KTHKFLDKTFEFLKDRGVIHYHE  219 (272)
T ss_dssp             ECCCS-----SGGGGHHHHHHHEEEEEEEEEEE
T ss_pred             ECCcc-----cHHHHHHHHHHHcCCCCEEEEEE
Confidence            76421     34468899999999999998865

>3b3j_A Histone-arginine methyltransferase CARM1; protein arginine methyltransferase 4, APO catalytic domain, regulator, mRNA processing; 2.55A {Rattus norvegicus}

Probab=99.26  E-value=1.2e-11  Score=120.84  Aligned_cols=105  Identities=21%  Similarity=0.258  Sum_probs=83.6

Q ss_pred             CCCCCEEEEeccCCChhhHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEccccchhhcCCCcceee
Q 042119          128 VVQPKKVAFVGSGPMPLTSIIMAKHHLTSTHFDNFDIDEAANDVARSIVASDAEFEGRMKFLTRDIMEVKEQLGEYDCIF  207 (286)
Q Consensus       128 ~~~~~~VL~IG~G~lp~tai~lA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~g~l~~~i~f~~~D~~~~~~~l~~fD~V~  207 (286)
                      ..++++|||||||+ |..++.+|+  .+..+|+++|+|+ +++.|++.++..| +.++++|+.+|+.+++.+ +.||+|+
T Consensus       156 ~~~~~~VLDiGcGt-G~la~~la~--~~~~~V~gvD~s~-~l~~A~~~~~~~g-l~~~v~~~~~d~~~~~~~-~~fD~Iv  229 (480)
T 3b3j_A          156 DFKDKIVLDVGCGS-GILSFFAAQ--AGARKIYAVEAST-MAQHAEVLVKSNN-LTDRIVVIPGKVEEVSLP-EQVDIII  229 (480)
T ss_dssp             GTTTCEEEEESCST-THHHHHHHH--TTCSEEEEEECHH-HHHHHHHHHHHTT-CTTTEEEEESCTTTCCCS-SCEEEEE
T ss_pred             hcCCCEEEEecCcc-cHHHHHHHH--cCCCEEEEEEcHH-HHHHHHHHHHHcC-CCCcEEEEECchhhCccC-CCeEEEE
Confidence            35788999999997 556677777  3667999999998 9999999999999 788999999999775432 4799999


Q ss_pred             hhhhc-cCChhHHHHHHHHHHhhccCCcEEEE
Q 042119          208 LAALV-GMSKEEKLTILGHIRKYMKDGGILLV  238 (286)
Q Consensus       208 ~aalv-g~~~~~k~~vl~~l~~~l~pgg~lv~  238 (286)
                      ..... .+..+...+.+.++.+.|+|||.++.
T Consensus       230 s~~~~~~~~~e~~~~~l~~~~~~LkpgG~li~  261 (480)
T 3b3j_A          230 SEPMGYMLFNERMLESYLHAKKYLKPSGNMFP  261 (480)
T ss_dssp             CCCCHHHHTCHHHHHHHHHGGGGEEEEEEEES
T ss_pred             EeCchHhcCcHHHHHHHHHHHHhcCCCCEEEE
Confidence            64321 11224556788889999999999985

>4hc4_A Protein arginine N-methyltransferase 6; HRMT1L6, S-adenosyl-L-homocysteine, struc genomics, structural genomics consortium, SGC; HET: SAH; 1.97A {Homo sapiens}

Probab=99.26  E-value=1.3e-11  Score=117.31  Aligned_cols=103  Identities=23%  Similarity=0.321  Sum_probs=81.8

Q ss_pred             CCCCEEEEeccCCChhhHHHHHhhcCCC-cEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEccccchhhcCCCcceee
Q 042119          129 VQPKKVAFVGSGPMPLTSIIMAKHHLTS-THFDNFDIDEAANDVARSIVASDAEFEGRMKFLTRDIMEVKEQLGEYDCIF  207 (286)
Q Consensus       129 ~~~~~VL~IG~G~lp~tai~lA~~~~~g-~~V~~iDid~~ai~~Ar~~~~~~g~l~~~i~f~~~D~~~~~~~l~~fD~V~  207 (286)
                      .++++|||||||+ |+-+++.|+   .| .+|++||.|+ +++.|+++++..| ++++|+++.+|+.++..+ ..||+|+
T Consensus        82 ~~~k~VLDvG~Gt-GiLs~~Aa~---aGA~~V~ave~s~-~~~~a~~~~~~n~-~~~~i~~i~~~~~~~~lp-e~~Dviv  154 (376)
T 4hc4_A           82 LRGKTVLDVGAGT-GILSIFCAQ---AGARRVYAVEASA-IWQQAREVVRFNG-LEDRVHVLPGPVETVELP-EQVDAIV  154 (376)
T ss_dssp             HTTCEEEEETCTT-SHHHHHHHH---TTCSEEEEEECST-THHHHHHHHHHTT-CTTTEEEEESCTTTCCCS-SCEEEEE
T ss_pred             cCCCEEEEeCCCc-cHHHHHHHH---hCCCEEEEEeChH-HHHHHHHHHHHcC-CCceEEEEeeeeeeecCC-ccccEEE
Confidence            4689999999996 566777777   45 4799999996 8899999999999 899999999999886544 5799987


Q ss_pred             hh---hhccCChhHHHHHHHHHHhhccCCcEEEEe
Q 042119          208 LA---ALVGMSKEEKLTILGHIRKYMKDGGILLVR  239 (286)
Q Consensus       208 ~a---alvg~~~~~k~~vl~~l~~~l~pgg~lv~r  239 (286)
                      ..   ... .....-..++....+.|+|||+++-.
T Consensus       155 sE~~~~~l-~~e~~l~~~l~a~~r~Lkp~G~~iP~  188 (376)
T 4hc4_A          155 SEWMGYGL-LHESMLSSVLHARTKWLKEGGLLLPA  188 (376)
T ss_dssp             CCCCBTTB-TTTCSHHHHHHHHHHHEEEEEEEESC
T ss_pred             eecccccc-cccchhhhHHHHHHhhCCCCceECCc
Confidence            42   211 12234567888889999999998754

>1jg1_A PIMT;, protein-L-isoaspartate O-methyltransferase; rossmann methyltransferase, protein repair isomerization; HET: SAH; 1.20A {Pyrococcus furiosus} SCOP: c.66.1.7 PDB: 1jg2_A* 1jg3_A* 1jg4_A*

Probab=99.26  E-value=2.2e-11  Score=106.83  Aligned_cols=105  Identities=14%  Similarity=0.162  Sum_probs=80.4

Q ss_pred             cCCCCCCEEEEeccCCChhhHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEccccchhhcCCCcce
Q 042119          126 NGVVQPKKVAFVGSGPMPLTSIIMAKHHLTSTHFDNFDIDEAANDVARSIVASDAEFEGRMKFLTRDIMEVKEQLGEYDC  205 (286)
Q Consensus       126 ~~~~~~~~VL~IG~G~lp~tai~lA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~g~l~~~i~f~~~D~~~~~~~l~~fD~  205 (286)
                      ....++.+||+||||+ |..+..+++. .+ .+|+++|+|+++++.|++.++..| + .++++.++|+..-..+...||+
T Consensus        87 l~~~~~~~vLdiG~G~-G~~~~~la~~-~~-~~v~~vD~~~~~~~~a~~~~~~~~-~-~~v~~~~~d~~~~~~~~~~fD~  161 (235)
T 1jg1_A           87 ANLKPGMNILEVGTGS-GWNAALISEI-VK-TDVYTIERIPELVEFAKRNLERAG-V-KNVHVILGDGSKGFPPKAPYDV  161 (235)
T ss_dssp             HTCCTTCCEEEECCTT-SHHHHHHHHH-HC-SCEEEEESCHHHHHHHHHHHHHTT-C-CSEEEEESCGGGCCGGGCCEEE
T ss_pred             cCCCCCCEEEEEeCCc-CHHHHHHHHH-hC-CEEEEEeCCHHHHHHHHHHHHHcC-C-CCcEEEECCcccCCCCCCCccE
Confidence            3567889999999995 6667778873 33 899999999999999999999998 4 4599999997322222235999


Q ss_pred             eehhhhccCChhHHHHHHHHHHhhccCCcEEEEeecC
Q 042119          206 IFLAALVGMSKEEKLTILGHIRKYMKDGGILLVRSAK  242 (286)
Q Consensus       206 V~~aalvg~~~~~k~~vl~~l~~~l~pgg~lv~r~~~  242 (286)
                      |+.......       +.+.+.+.|+|||++++....
T Consensus       162 Ii~~~~~~~-------~~~~~~~~L~pgG~lvi~~~~  191 (235)
T 1jg1_A          162 IIVTAGAPK-------IPEPLIEQLKIGGKLIIPVGS  191 (235)
T ss_dssp             EEECSBBSS-------CCHHHHHTEEEEEEEEEEECS
T ss_pred             EEECCcHHH-------HHHHHHHhcCCCcEEEEEEec
Confidence            997654421       223688999999999987643

>3lst_A CALO1 methyltransferase; calicheamicin, enediyne, SAH, STRU genomics, PSI-2, protein structure initiative; HET: SAH; 2.40A {Micromonospora echinospora}

Probab=99.26  E-value=1e-11  Score=115.63  Aligned_cols=109  Identities=19%  Similarity=0.206  Sum_probs=83.1

Q ss_pred             HHhcCCCCCCEEEEeccCCChhhHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEccccchhhcCCC
Q 042119          123 LSENGVVQPKKVAFVGSGPMPLTSIIMAKHHLTSTHFDNFDIDEAANDVARSIVASDAEFEGRMKFLTRDIMEVKEQLGE  202 (286)
Q Consensus       123 l~~~~~~~~~~VL~IG~G~lp~tai~lA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~g~l~~~i~f~~~D~~~~~~~l~~  202 (286)
                      +......++.+|||||||+ |..+..+++ .+++.+++++|+ ++++.  ++.++..+ +.++++|+.+|..+ +.  .+
T Consensus       177 ~~~~~~~~~~~vLDvG~G~-G~~~~~l~~-~~p~~~~~~~D~-~~~~~--~~~~~~~~-~~~~v~~~~~d~~~-~~--p~  247 (348)
T 3lst_A          177 ARAGDFPATGTVADVGGGR-GGFLLTVLR-EHPGLQGVLLDR-AEVVA--RHRLDAPD-VAGRWKVVEGDFLR-EV--PH  247 (348)
T ss_dssp             HHHSCCCSSEEEEEETCTT-SHHHHHHHH-HCTTEEEEEEEC-HHHHT--TCCCCCGG-GTTSEEEEECCTTT-CC--CC
T ss_pred             HHhCCccCCceEEEECCcc-CHHHHHHHH-HCCCCEEEEecC-HHHhh--cccccccC-CCCCeEEEecCCCC-CC--CC
Confidence            3344557789999999997 566677777 478999999999 55555  44444456 56899999999852 22  28


Q ss_pred             cceeehhhhc-cCChhHHHHHHHHHHhhccCCcEEEEee
Q 042119          203 YDCIFLAALV-GMSKEEKLTILGHIRKYMKDGGILLVRS  240 (286)
Q Consensus       203 fD~V~~aalv-g~~~~~k~~vl~~l~~~l~pgg~lv~r~  240 (286)
                      ||+|+....+ .++.++..++++++++.|||||++++.+
T Consensus       248 ~D~v~~~~vlh~~~d~~~~~~L~~~~~~LkpgG~l~i~e  286 (348)
T 3lst_A          248 ADVHVLKRILHNWGDEDSVRILTNCRRVMPAHGRVLVID  286 (348)
T ss_dssp             CSEEEEESCGGGSCHHHHHHHHHHHHHTCCTTCEEEEEE
T ss_pred             CcEEEEehhccCCCHHHHHHHHHHHHHhcCCCCEEEEEE
Confidence            9999876544 4565665799999999999999999865

>3sso_A Methyltransferase; macrolide, natural product, rossman fold; HET: SAH; 1.90A {Micromonospora griseorubida} PDB: 3ssn_A* 3ssm_A*

Probab=99.26  E-value=1.2e-11  Score=118.53  Aligned_cols=99  Identities=17%  Similarity=0.188  Sum_probs=78.1

Q ss_pred             CCCCEEEEeccC------CChhhHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEccccchhhc---
Q 042119          129 VQPKKVAFVGSG------PMPLTSIIMAKHHLTSTHFDNFDIDEAANDVARSIVASDAEFEGRMKFLTRDIMEVKEQ---  199 (286)
Q Consensus       129 ~~~~~VL~IG~G------~lp~tai~lA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~g~l~~~i~f~~~D~~~~~~~---  199 (286)
                      .++.+|||||||      +.|. ++.++++.+++++|+|+|+|+++.         ..  ..+++|+++|+.+++..   
T Consensus       215 ~~~~rVLDIGCG~~~~~~TGG~-Sl~la~~~fP~a~V~GVDiSp~m~---------~~--~~rI~fv~GDa~dlpf~~~l  282 (419)
T 3sso_A          215 NQQVRVLEIGVGGYKHPEWGGG-SLRMWKSFFPRGQIYGLDIMDKSH---------VD--ELRIRTIQGDQNDAEFLDRI  282 (419)
T ss_dssp             TSCCEEEEECCSCTTCSSCCCH-HHHHHHHHCTTCEEEEEESSCCGG---------GC--BTTEEEEECCTTCHHHHHHH
T ss_pred             CCCCEEEEEecCCCcCCCCCHH-HHHHHHHhCCCCEEEEEECCHHHh---------hc--CCCcEEEEecccccchhhhh
Confidence            567999999999      5454 455555456899999999999972         12  36899999999886654   


Q ss_pred             ---CCCcceeehhhhccCChhHHHHHHHHHHhhccCCcEEEEeec
Q 042119          200 ---LGEYDCIFLAALVGMSKEEKLTILGHIRKYMKDGGILLVRSA  241 (286)
Q Consensus       200 ---l~~fD~V~~aalvg~~~~~k~~vl~~l~~~l~pgg~lv~r~~  241 (286)
                         .+.||+|+....  +..++..+.|+++.++|||||++++.+.
T Consensus       283 ~~~d~sFDlVisdgs--H~~~d~~~aL~el~rvLKPGGvlVi~Dl  325 (419)
T 3sso_A          283 ARRYGPFDIVIDDGS--HINAHVRTSFAALFPHVRPGGLYVIEDM  325 (419)
T ss_dssp             HHHHCCEEEEEECSC--CCHHHHHHHHHHHGGGEEEEEEEEEECG
T ss_pred             hcccCCccEEEECCc--ccchhHHHHHHHHHHhcCCCeEEEEEec
Confidence               468999996543  2346788999999999999999999763

>1af7_A Chemotaxis receptor methyltransferase CHER; chemotaxis receptor methylation; HET: SAH; 2.00A {Salmonella typhimurium} SCOP: a.58.1.1 c.66.1.8 PDB: 1bc5_A*

Probab=99.26  E-value=1.9e-11  Score=111.41  Aligned_cols=113  Identities=20%  Similarity=0.267  Sum_probs=83.5

Q ss_pred             CCCEEEEeccCCChh---hHHHHHhhcCC----CcEEEEEeCChHHHHHHHHHHHh-----------------------c
Q 042119          130 QPKKVAFVGSGPMPL---TSIIMAKHHLT----STHFDNFDIDEAANDVARSIVAS-----------------------D  179 (286)
Q Consensus       130 ~~~~VL~IG~G~lp~---tai~lA~~~~~----g~~V~~iDid~~ai~~Ar~~~~~-----------------------~  179 (286)
                      ++.+|+++|||++-.   -|+.+++. .+    +.+|+|+|+|++|++.|++.+-.                       .
T Consensus       105 ~~~rIld~GCgTGee~ysiAi~L~e~-~~~~~~~~~I~atDis~~~L~~Ar~~~y~~~~~~~~~~~~~~~~f~~~~~~~~  183 (274)
T 1af7_A          105 GEYRVWSAAASTGEEPYSIAITLADA-LGMAPGRWKVFASDIDTEVLEKARSGIYRLSELKTLSPQQLQRYFMRGTGPHE  183 (274)
T ss_dssp             SCEEEEESCCTTTHHHHHHHHHHHHH-HCSCTTSEEEEEEESCHHHHHHHHHTEEEGGGGTTSCHHHHHHHEEECCTTSC
T ss_pred             CCcEEEEeeccCChhHHHHHHHHHHh-cccCCCCeEEEEEECCHHHHHHHHhcCCchhhhhcCCHHHHHHHhhccccCCC
Confidence            467999999997431   35566662 22    57999999999999999986410                       0


Q ss_pred             C------CCCCCeEEEEccccchhhc-CCCcceeehhh-hccCChhHHHHHHHHHHhhccCCcEEEEeecCc
Q 042119          180 A------EFEGRMKFLTRDIMEVKEQ-LGEYDCIFLAA-LVGMSKEEKLTILGHIRKYMKDGGILLVRSAKG  243 (286)
Q Consensus       180 g------~l~~~i~f~~~D~~~~~~~-l~~fD~V~~aa-lvg~~~~~k~~vl~~l~~~l~pgg~lv~r~~~g  243 (286)
                      |      .+.++|+|.++|+.+.+.+ .+.||+|+... ++..+.+.+.++++++++.|+|||.+++-....
T Consensus       184 ~~~~v~~~lr~~V~F~~~dl~~~~~~~~~~fDlI~crnvliyf~~~~~~~vl~~~~~~L~pgG~L~lg~sE~  255 (274)
T 1af7_A          184 GLVRVRQELANYVEFSSVNLLEKQYNVPGPFDAIFCRNVMIYFDKTTQEDILRRFVPLLKPDGLLFAGHSEN  255 (274)
T ss_dssp             SEEEECHHHHTTEEEEECCTTCSSCCCCCCEEEEEECSSGGGSCHHHHHHHHHHHGGGEEEEEEEEECTTCC
T ss_pred             CceeechhhcccCeEEecccCCCCCCcCCCeeEEEECCchHhCCHHHHHHHHHHHHHHhCCCcEEEEEeccc
Confidence            0      0114799999999874333 35799999654 335677888999999999999999999965443

>2h00_A Methyltransferase 10 domain containing protein; structural genomics, structural genomics consortium, SGC; HET: SAH; 2.00A {Homo sapiens} SCOP: c.66.1.54

Probab=99.25  E-value=6.6e-12  Score=111.19  Aligned_cols=106  Identities=16%  Similarity=0.187  Sum_probs=73.3

Q ss_pred             CCCEEEEeccCCChhhHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEccccc-hhhcC-----CCc
Q 042119          130 QPKKVAFVGSGPMPLTSIIMAKHHLTSTHFDNFDIDEAANDVARSIVASDAEFEGRMKFLTRDIME-VKEQL-----GEY  203 (286)
Q Consensus       130 ~~~~VL~IG~G~lp~tai~lA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~g~l~~~i~f~~~D~~~-~~~~l-----~~f  203 (286)
                      ++.+|||+|||++.+ ++.+|++ .++++|+++|+|+++++.|++.++..| +.++++|+++|+.+ +...+     +.|
T Consensus        65 ~~~~vLDlG~G~G~~-~~~la~~-~~~~~v~gvD~s~~~~~~a~~~~~~~~-~~~~v~~~~~d~~~~~~~~~~~~~~~~f  141 (254)
T 2h00_A           65 TLRRGIDIGTGASCI-YPLLGAT-LNGWYFLATEVDDMCFNYAKKNVEQNN-LSDLIKVVKVPQKTLLMDALKEESEIIY  141 (254)
T ss_dssp             CCCEEEEESCTTTTH-HHHHHHH-HHCCEEEEEESCHHHHHHHHHHHHHTT-CTTTEEEEECCTTCSSTTTSTTCCSCCB
T ss_pred             CCCEEEEeCCChhHH-HHHHHHh-CCCCeEEEEECCHHHHHHHHHHHHHcC-CCccEEEEEcchhhhhhhhhhcccCCcc
Confidence            578999999997554 4556652 468999999999999999999999999 67789999999866 22222     369


Q ss_pred             ceeehhhh-ccCC-------------hhHHHHHHHHHHhhccCCcEEEE
Q 042119          204 DCIFLAAL-VGMS-------------KEEKLTILGHIRKYMKDGGILLV  238 (286)
Q Consensus       204 D~V~~aal-vg~~-------------~~~k~~vl~~l~~~l~pgg~lv~  238 (286)
                      |+|+..-- ....             .+++..++..+.+.|||||.+.+
T Consensus       142 D~i~~npp~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~LkpgG~l~~  190 (254)
T 2h00_A          142 DFCMCNPPFFANQLEAKGVNSRNPRRPPPSSVNTGGITEIMAEGGELEF  190 (254)
T ss_dssp             SEEEECCCCC-------------------------CTTTTHHHHTHHHH
T ss_pred             cEEEECCCCccCcchhcccccccccccCCHHHHhhhHHHHEecCCEEEE
Confidence            99986521 1100             12334567788888899887654

>2qm3_A Predicted methyltransferase; putative methyltransferase, structural genomics, pyrococcus PSI-2, protein structure initiative; HET: MSE; 2.05A {Pyrococcus furiosus dsm 3638}

Probab=99.24  E-value=2e-10  Score=108.30  Aligned_cols=106  Identities=18%  Similarity=0.217  Sum_probs=82.3

Q ss_pred             CCCCCCEEEEeccCCChhhHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEccccc-hhhc-CCCcc
Q 042119          127 GVVQPKKVAFVGSGPMPLTSIIMAKHHLTSTHFDNFDIDEAANDVARSIVASDAEFEGRMKFLTRDIME-VKEQ-LGEYD  204 (286)
Q Consensus       127 ~~~~~~~VL~IG~G~lp~tai~lA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~g~l~~~i~f~~~D~~~-~~~~-l~~fD  204 (286)
                      ...++++||||| |+ |..++.+|+ ..++.+|+++|+|+++++.|+++++..| +. +++|+++|+.+ ++.. .+.||
T Consensus       169 ~~~~~~~VLDlG-G~-G~~~~~la~-~~~~~~v~~vDi~~~~l~~a~~~~~~~g-~~-~v~~~~~D~~~~l~~~~~~~fD  243 (373)
T 2qm3_A          169 GDLENKDIFVLG-DD-DLTSIALML-SGLPKRIAVLDIDERLTKFIEKAANEIG-YE-DIEIFTFDLRKPLPDYALHKFD  243 (373)
T ss_dssp             TCSTTCEEEEES-CT-TCHHHHHHH-HTCCSEEEEECSCHHHHHHHHHHHHHHT-CC-CEEEECCCTTSCCCTTTSSCBS
T ss_pred             CCCCCCEEEEEC-CC-CHHHHHHHH-hCCCCEEEEEECCHHHHHHHHHHHHHcC-CC-CEEEEEChhhhhchhhccCCcc
Confidence            345689999999 96 566777787 3556799999999999999999999999 55 89999999987 4432 24799


Q ss_pred             eeehhhhccCChhHHHHHHHHHHhhccCCcEE-EEe
Q 042119          205 CIFLAALVGMSKEEKLTILGHIRKYMKDGGIL-LVR  239 (286)
Q Consensus       205 ~V~~aalvg~~~~~k~~vl~~l~~~l~pgg~l-v~r  239 (286)
                      +|+++...+  ......+++++.+.|+|||.+ ++.
T Consensus       244 ~Vi~~~p~~--~~~~~~~l~~~~~~LkpgG~~~~~~  277 (373)
T 2qm3_A          244 TFITDPPET--LEAIRAFVGRGIATLKGPRCAGYFG  277 (373)
T ss_dssp             EEEECCCSS--HHHHHHHHHHHHHTBCSTTCEEEEE
T ss_pred             EEEECCCCc--hHHHHHHHHHHHHHcccCCeEEEEE
Confidence            999864221  122468999999999999943 443

>2b78_A Hypothetical protein SMU.776; structure genomics, methyltransferase, caries, structural genomics, unknown function; 2.00A {Streptococcus mutans} SCOP: b.122.1.9 c.66.1.51 PDB: 3ldf_A*

Probab=99.23  E-value=3.6e-11  Score=114.16  Aligned_cols=108  Identities=11%  Similarity=0.141  Sum_probs=84.1

Q ss_pred             CCCCEEEEeccCCChhhHHHHHhhcCCCc-EEEEEeCChHHHHHHHHHHHhcCCCCC-CeEEEEccccchhhcC----CC
Q 042119          129 VQPKKVAFVGSGPMPLTSIIMAKHHLTST-HFDNFDIDEAANDVARSIVASDAEFEG-RMKFLTRDIMEVKEQL----GE  202 (286)
Q Consensus       129 ~~~~~VL~IG~G~lp~tai~lA~~~~~g~-~V~~iDid~~ai~~Ar~~~~~~g~l~~-~i~f~~~D~~~~~~~l----~~  202 (286)
                      .++++|||+|||++ .-++.+|+   .|+ +|+++|+|++|++.|+++++..| +.+ +++|+++|+.+....+    ..
T Consensus       211 ~~~~~VLDl~cGtG-~~sl~la~---~ga~~V~~vD~s~~al~~A~~N~~~n~-~~~~~v~~~~~D~~~~l~~~~~~~~~  285 (385)
T 2b78_A          211 AAGKTVLNLFSYTA-AFSVAAAM---GGAMATTSVDLAKRSRALSLAHFEANH-LDMANHQLVVMDVFDYFKYARRHHLT  285 (385)
T ss_dssp             TBTCEEEEETCTTT-HHHHHHHH---TTBSEEEEEESCTTHHHHHHHHHHHTT-CCCTTEEEEESCHHHHHHHHHHTTCC
T ss_pred             cCCCeEEEEeeccC-HHHHHHHH---CCCCEEEEEECCHHHHHHHHHHHHHcC-CCccceEEEECCHHHHHHHHHHhCCC
Confidence            57889999999974 55577777   355 89999999999999999999999 555 8999999998754322    37


Q ss_pred             cceeehhhh--------ccCChhHHHHHHHHHHhhccCCcEEEEeec
Q 042119          203 YDCIFLAAL--------VGMSKEEKLTILGHIRKYMKDGGILLVRSA  241 (286)
Q Consensus       203 fD~V~~aal--------vg~~~~~k~~vl~~l~~~l~pgg~lv~r~~  241 (286)
                      ||+|+++.-        +........+++..+.+.|+|||++++...
T Consensus       286 fD~Ii~DPP~~~~~~~~~~~~~~~~~~ll~~~~~~L~pgG~l~~~~~  332 (385)
T 2b78_A          286 YDIIIIDPPSFARNKKEVFSVSKDYHKLIRQGLEILSENGLIIASTN  332 (385)
T ss_dssp             EEEEEECCCCC-----CCCCHHHHHHHHHHHHHHTEEEEEEEEEEEC
T ss_pred             ccEEEECCCCCCCChhhHHHHHHHHHHHHHHHHHhcCCCcEEEEEeC
Confidence            999997421        111123455688889999999999988763

>2pjd_A Ribosomal RNA small subunit methyltransferase C; gene duplication, RNA modification, SAM binding; 2.10A {Escherichia coli}

Probab=99.23  E-value=1.5e-11  Score=114.52  Aligned_cols=107  Identities=19%  Similarity=0.274  Sum_probs=85.3

Q ss_pred             CCCCCEEEEeccCCChhhHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEccccchhhcCCCcceee
Q 042119          128 VVQPKKVAFVGSGPMPLTSIIMAKHHLTSTHFDNFDIDEAANDVARSIVASDAEFEGRMKFLTRDIMEVKEQLGEYDCIF  207 (286)
Q Consensus       128 ~~~~~~VL~IG~G~lp~tai~lA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~g~l~~~i~f~~~D~~~~~~~l~~fD~V~  207 (286)
                      ..++.+|||||||+ |..++.+++ ..++.+|+++|+|+.+++.|++.+...| +  +++++.+|+.+..  .+.||+|+
T Consensus       194 ~~~~~~VLDlGcG~-G~~~~~la~-~~~~~~v~~vD~s~~~l~~a~~~~~~~~-~--~~~~~~~d~~~~~--~~~fD~Iv  266 (343)
T 2pjd_A          194 PHTKGKVLDVGCGA-GVLSVAFAR-HSPKIRLTLCDVSAPAVEASRATLAANG-V--EGEVFASNVFSEV--KGRFDMII  266 (343)
T ss_dssp             TTCCSBCCBTTCTT-SHHHHHHHH-HCTTCBCEEEESBHHHHHHHHHHHHHTT-C--CCEEEECSTTTTC--CSCEEEEE
T ss_pred             cCCCCeEEEecCcc-CHHHHHHHH-HCCCCEEEEEECCHHHHHHHHHHHHHhC-C--CCEEEEccccccc--cCCeeEEE
Confidence            45678999999996 556677777 3677899999999999999999999888 3  4788999986643  35799998


Q ss_pred             hhhhccC----ChhHHHHHHHHHHhhccCCcEEEEeec
Q 042119          208 LAALVGM----SKEEKLTILGHIRKYMKDGGILLVRSA  241 (286)
Q Consensus       208 ~aalvg~----~~~~k~~vl~~l~~~l~pgg~lv~r~~  241 (286)
                      .....+.    +.+...++++++.+.|+|||.+++...
T Consensus       267 ~~~~~~~g~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~  304 (343)
T 2pjd_A          267 SNPPFHDGMQTSLDAAQTLIRGAVRHLNSGGELRIVAN  304 (343)
T ss_dssp             ECCCCCSSSHHHHHHHHHHHHHHGGGEEEEEEEEEEEE
T ss_pred             ECCCcccCccCCHHHHHHHHHHHHHhCCCCcEEEEEEc
Confidence            7533221    345678899999999999999988653

>3giw_A Protein of unknown function DUF574; rossmann-fold protein, structural genomics, joint center for structural genomics, JCSG; HET: MSE UNL; 1.45A {Streptomyces avermitilis} PDB: 3go4_A*

Probab=99.23  E-value=2.5e-11  Score=110.82  Aligned_cols=108  Identities=18%  Similarity=0.267  Sum_probs=78.2

Q ss_pred             CCCEEEEeccCC--ChhhHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEccccchhh----c--CC
Q 042119          130 QPKKVAFVGSGP--MPLTSIIMAKHHLTSTHFDNFDIDEAANDVARSIVASDAEFEGRMKFLTRDIMEVKE----Q--LG  201 (286)
Q Consensus       130 ~~~~VL~IG~G~--lp~tai~lA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~g~l~~~i~f~~~D~~~~~~----~--l~  201 (286)
                      ..++|||||||.  .+.+ ..+|++..|+++|+++|.||.|+++||+++...+  ..+++|+++|+.+...    .  -+
T Consensus        78 g~~q~LDLGcG~pT~~~~-~~la~~~~P~arVv~VD~sp~mLa~Ar~~l~~~~--~~~~~~v~aD~~~~~~~l~~~~~~~  154 (277)
T 3giw_A           78 GIRQFLDIGTGIPTSPNL-HEIAQSVAPESRVVYVDNDPIVLTLSQGLLASTP--EGRTAYVEADMLDPASILDAPELRD  154 (277)
T ss_dssp             CCCEEEEESCCSCCSSCH-HHHHHHHCTTCEEEEEECCHHHHHTTHHHHCCCS--SSEEEEEECCTTCHHHHHTCHHHHT
T ss_pred             CCCEEEEeCCCCCcccHH-HHHHHHHCCCCEEEEEeCChHHHHHHHHHhccCC--CCcEEEEEecccChhhhhccccccc
Confidence            457999999994  3344 3344435789999999999999999999876544  2579999999987531    0  12


Q ss_pred             Ccc-----eeehhhhc-cCChhH-HHHHHHHHHhhccCCcEEEEee
Q 042119          202 EYD-----CIFLAALV-GMSKEE-KLTILGHIRKYMKDGGILLVRS  240 (286)
Q Consensus       202 ~fD-----~V~~aalv-g~~~~~-k~~vl~~l~~~l~pgg~lv~r~  240 (286)
                      .||     .|+..+.. ..+.++ ...++.++++.|+|||.|++..
T Consensus       155 ~~D~~~p~av~~~avLH~l~d~~~p~~~l~~l~~~L~PGG~Lvls~  200 (277)
T 3giw_A          155 TLDLTRPVALTVIAIVHFVLDEDDAVGIVRRLLEPLPSGSYLAMSI  200 (277)
T ss_dssp             TCCTTSCCEEEEESCGGGSCGGGCHHHHHHHHHTTSCTTCEEEEEE
T ss_pred             ccCcCCcchHHhhhhHhcCCchhhHHHHHHHHHHhCCCCcEEEEEe
Confidence            354     34444333 334333 4789999999999999999975

>3m4x_A NOL1/NOP2/SUN family protein; mtase domain, PUA domain, RRM motif, transferase; 2.28A {Enterococcus faecium}

Probab=99.22  E-value=4.8e-11  Score=116.07  Aligned_cols=111  Identities=16%  Similarity=0.124  Sum_probs=85.9

Q ss_pred             CCCCCCEEEEeccCCChhhHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEccccchhh-cCCCcce
Q 042119          127 GVVQPKKVAFVGSGPMPLTSIIMAKHHLTSTHFDNFDIDEAANDVARSIVASDAEFEGRMKFLTRDIMEVKE-QLGEYDC  205 (286)
Q Consensus       127 ~~~~~~~VL~IG~G~lp~tai~lA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~g~l~~~i~f~~~D~~~~~~-~l~~fD~  205 (286)
                      .+.++.+|||+||||++.|. .+|+....+++|+++|+|+.+++.+++++++.| + .++.++++|+.++.. ..+.||.
T Consensus       102 ~~~~g~~VLDlcaGpGgkt~-~lA~~~~~~g~V~AvDis~~rl~~~~~n~~r~g-~-~nv~v~~~Da~~l~~~~~~~FD~  178 (456)
T 3m4x_A          102 AAKPGEKVLDLCAAPGGKST-QLAAQMKGKGLLVTNEIFPKRAKILSENIERWG-V-SNAIVTNHAPAELVPHFSGFFDR  178 (456)
T ss_dssp             CCCTTCEEEESSCTTCHHHH-HHHHHHTTCSEEEEECSSHHHHHHHHHHHHHHT-C-SSEEEECCCHHHHHHHHTTCEEE
T ss_pred             CCCCCCEEEEECCCcCHHHH-HHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHcC-C-CceEEEeCCHHHhhhhccccCCE
Confidence            46788999999999977664 555533345899999999999999999999999 4 479999999988763 2357999


Q ss_pred             eehhhh---ccC---ChhH---------------HHHHHHHHHhhccCCcEEEEee
Q 042119          206 IFLAAL---VGM---SKEE---------------KLTILGHIRKYMKDGGILLVRS  240 (286)
Q Consensus       206 V~~aal---vg~---~~~~---------------k~~vl~~l~~~l~pgg~lv~r~  240 (286)
                      |++++-   .|+   +++.               ..++|+++.+.|||||+|++.+
T Consensus       179 Il~DaPCSg~G~~rr~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~LkpGG~LvYsT  234 (456)
T 3m4x_A          179 IVVDAPCSGEGMFRKDPNAIKEWTEESPLYCQKRQQEILSSAIKMLKNKGQLIYST  234 (456)
T ss_dssp             EEEECCCCCGGGTTTCHHHHHHCCTTHHHHHHHHHHHHHHHHHHTEEEEEEEEEEE
T ss_pred             EEECCCCCCccccccCHHHhhhcCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEE
Confidence            998542   111   1111               1278999999999999999854

>1r18_A Protein-L-isoaspartate(D-aspartate)-O-methyltrans; methyltransferase, isomerization, protein repair, S-adenosyl homocysteine; HET: SAH; 2.20A {Drosophila melanogaster} SCOP: c.66.1.7

Probab=99.21  E-value=2.2e-11  Score=106.12  Aligned_cols=104  Identities=14%  Similarity=0.187  Sum_probs=80.4

Q ss_pred             CCCCCEEEEeccCCChhhHHHHHhhcCC------CcEEEEEeCChHHHHHHHHHHHhcCCC----CCCeEEEEccccchh
Q 042119          128 VVQPKKVAFVGSGPMPLTSIIMAKHHLT------STHFDNFDIDEAANDVARSIVASDAEF----EGRMKFLTRDIMEVK  197 (286)
Q Consensus       128 ~~~~~~VL~IG~G~lp~tai~lA~~~~~------g~~V~~iDid~~ai~~Ar~~~~~~g~l----~~~i~f~~~D~~~~~  197 (286)
                      +.++.+||+||||+ |..+..+++. ..      ..+|+++|+++++++.|++.+...| +    ..+++++++|+.+..
T Consensus        82 ~~~~~~VLdiG~G~-G~~~~~la~~-~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~-~~~~~~~~v~~~~~d~~~~~  158 (227)
T 1r18_A           82 LKPGARILDVGSGS-GYLTACFYRY-IKAKGVDADTRIVGIEHQAELVRRSKANLNTDD-RSMLDSGQLLIVEGDGRKGY  158 (227)
T ss_dssp             CCTTCEEEEESCTT-SHHHHHHHHH-HHHSCCCTTCEEEEEESCHHHHHHHHHHHHHHH-HHHHHHTSEEEEESCGGGCC
T ss_pred             CCCCCEEEEECCCc-cHHHHHHHHh-cccccCCccCEEEEEEcCHHHHHHHHHHHHhcC-ccccCCCceEEEECCcccCC
Confidence            57789999999997 5666677763 22      2599999999999999999988765 2    268999999997632


Q ss_pred             hcCCCcceeehhhhccCChhHHHHHHHHHHhhccCCcEEEEeec
Q 042119          198 EQLGEYDCIFLAALVGMSKEEKLTILGHIRKYMKDGGILLVRSA  241 (286)
Q Consensus       198 ~~l~~fD~V~~aalvg~~~~~k~~vl~~l~~~l~pgg~lv~r~~  241 (286)
                      .+.+.||+|+......       .+.+++.+.|||||++++-..
T Consensus       159 ~~~~~fD~I~~~~~~~-------~~~~~~~~~LkpgG~lvi~~~  195 (227)
T 1r18_A          159 PPNAPYNAIHVGAAAP-------DTPTELINQLASGGRLIVPVG  195 (227)
T ss_dssp             GGGCSEEEEEECSCBS-------SCCHHHHHTEEEEEEEEEEES
T ss_pred             CcCCCccEEEECCchH-------HHHHHHHHHhcCCCEEEEEEe
Confidence            2225799998776542       134678999999999998764

>2yxl_A PH0851 protein, 450AA long hypothetical FMU protein; FMU-homolog, methyltransferase, structural genomics, NPPSFA; HET: SFG; 2.55A {Pyrococcus horikoshii}

Probab=99.19  E-value=1.1e-10  Score=113.05  Aligned_cols=110  Identities=21%  Similarity=0.244  Sum_probs=85.2

Q ss_pred             CCCCCCEEEEeccCCChhhHHHHHhhcCCC-cEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEccccchhhcC--CCc
Q 042119          127 GVVQPKKVAFVGSGPMPLTSIIMAKHHLTS-THFDNFDIDEAANDVARSIVASDAEFEGRMKFLTRDIMEVKEQL--GEY  203 (286)
Q Consensus       127 ~~~~~~~VL~IG~G~lp~tai~lA~~~~~g-~~V~~iDid~~ai~~Ar~~~~~~g~l~~~i~f~~~D~~~~~~~l--~~f  203 (286)
                      .+.++.+|||+||||++.|. .+|+ ..++ ++|+++|+|+.+++.+++++++.| + .+++++++|+.+.+..+  +.|
T Consensus       256 ~~~~g~~VLDlgaG~G~~t~-~la~-~~~~~~~v~a~D~s~~~l~~~~~~~~~~g-~-~~v~~~~~D~~~~~~~~~~~~f  331 (450)
T 2yxl_A          256 DPKPGETVVDLAAAPGGKTT-HLAE-LMKNKGKIYAFDVDKMRMKRLKDFVKRMG-I-KIVKPLVKDARKAPEIIGEEVA  331 (450)
T ss_dssp             CCCTTCEEEESSCTTCHHHH-HHHH-HTTTCSEEEEECSCHHHHHHHHHHHHHTT-C-CSEEEECSCTTCCSSSSCSSCE
T ss_pred             CCCCcCEEEEeCCCccHHHH-HHHH-HcCCCCEEEEEcCCHHHHHHHHHHHHHcC-C-CcEEEEEcChhhcchhhccCCC
Confidence            46788999999999977665 4555 2455 899999999999999999999999 4 57999999998765333  469


Q ss_pred             ceeehhh---hccC---ChhH---------------HHHHHHHHHhhccCCcEEEEee
Q 042119          204 DCIFLAA---LVGM---SKEE---------------KLTILGHIRKYMKDGGILLVRS  240 (286)
Q Consensus       204 D~V~~aa---lvg~---~~~~---------------k~~vl~~l~~~l~pgg~lv~r~  240 (286)
                      |+|++++   ..|.   .++.               ..++++++.+.|||||++++.+
T Consensus       332 D~Vl~D~Pcsg~g~~~~~pd~~~~~~~~~~~~l~~~q~~iL~~a~~~LkpGG~lvy~t  389 (450)
T 2yxl_A          332 DKVLLDAPCTSSGTIGKNPELRWRLREDKINEMSQLQRELLESAARLVKPGGRLLYTT  389 (450)
T ss_dssp             EEEEEECCCCCGGGTTTSTTHHHHCCTTSHHHHHHHHHHHHHHHHTTEEEEEEEEEEE
T ss_pred             CEEEEcCCCCCCeeeccChhhhhhCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEe
Confidence            9999742   1111   1111               1578999999999999999865

>2cmg_A Spermidine synthase; transferase, putrescine aminopropyltransferase, spermidine biosynthesis, polyamine biosynthesis, SPEE; 2.0A {Helicobacter pylori} PDB: 2cmh_A

Probab=99.19  E-value=1.7e-11  Score=110.87  Aligned_cols=100  Identities=17%  Similarity=0.149  Sum_probs=79.5

Q ss_pred             CCCCEEEEeccCCChhhHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhc--CCCCCCeEEEEccccchhhcCCCccee
Q 042119          129 VQPKKVAFVGSGPMPLTSIIMAKHHLTSTHFDNFDIDEAANDVARSIVASD--AEFEGRMKFLTRDIMEVKEQLGEYDCI  206 (286)
Q Consensus       129 ~~~~~VL~IG~G~lp~tai~lA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~--g~l~~~i~f~~~D~~~~~~~l~~fD~V  206 (286)
                      ..+++||+||||. |.++..+++ + + .+|+++|+|+++++.|++.+...  +.-.++++++.+|+.+..   +.||+|
T Consensus        71 ~~~~~VL~iG~G~-G~~~~~ll~-~-~-~~v~~veid~~~i~~ar~~~~~~~~~~~~~rv~~~~~D~~~~~---~~fD~I  143 (262)
T 2cmg_A           71 KELKEVLIVDGFD-LELAHQLFK-Y-D-THIDFVQADEKILDSFISFFPHFHEVKNNKNFTHAKQLLDLDI---KKYDLI  143 (262)
T ss_dssp             SCCCEEEEESSCC-HHHHHHHTT-S-S-CEEEEECSCHHHHGGGTTTSTTHHHHHTCTTEEEESSGGGSCC---CCEEEE
T ss_pred             CCCCEEEEEeCCc-CHHHHHHHh-C-C-CEEEEEECCHHHHHHHHHHHHhhccccCCCeEEEEechHHHHH---hhCCEE
Confidence            4678999999995 777777877 3 5 89999999999999999875431  101368999999997754   689999


Q ss_pred             ehhhhccCChhHHHHHHHHHHhhccCCcEEEEeec
Q 042119          207 FLAALVGMSKEEKLTILGHIRKYMKDGGILLVRSA  241 (286)
Q Consensus       207 ~~aalvg~~~~~k~~vl~~l~~~l~pgg~lv~r~~  241 (286)
                      +.++.      +...+++.+.+.|+|||++++...
T Consensus       144 i~d~~------dp~~~~~~~~~~L~pgG~lv~~~~  172 (262)
T 2cmg_A          144 FCLQE------PDIHRIDGLKRMLKEDGVFISVAK  172 (262)
T ss_dssp             EESSC------CCHHHHHHHHTTEEEEEEEEEEEE
T ss_pred             EECCC------ChHHHHHHHHHhcCCCcEEEEEcC
Confidence            98742      222499999999999999999753

>2frx_A Hypothetical protein YEBU; rossmann-type S-adenosylmethionine-dependent methyltransfera domain; 2.90A {Escherichia coli}

Probab=99.18  E-value=6.6e-11  Score=115.71  Aligned_cols=108  Identities=14%  Similarity=0.171  Sum_probs=84.0

Q ss_pred             CCCEEEEeccCCChhhHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEccccchhh-cCCCcceeeh
Q 042119          130 QPKKVAFVGSGPMPLTSIIMAKHHLTSTHFDNFDIDEAANDVARSIVASDAEFEGRMKFLTRDIMEVKE-QLGEYDCIFL  208 (286)
Q Consensus       130 ~~~~VL~IG~G~lp~tai~lA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~g~l~~~i~f~~~D~~~~~~-~l~~fD~V~~  208 (286)
                      ++.+|||+||||++.|. .+|+....+++|+++|+|+.+++.+++++++.| + .+++++++|+.++.. ..+.||.|++
T Consensus       117 ~g~~VLDl~aGpG~kt~-~lA~~~~~~g~V~avDis~~~l~~~~~n~~r~g-~-~nv~~~~~D~~~~~~~~~~~fD~Il~  193 (479)
T 2frx_A          117 APQRVMDVAAAPGSKTT-QISARMNNEGAILANEFSASRVKVLHANISRCG-I-SNVALTHFDGRVFGAAVPEMFDAILL  193 (479)
T ss_dssp             CCSEEEESSCTTSHHHH-HHHHHTTTCSEEEEECSSHHHHHHHHHHHHHHT-C-CSEEEECCCSTTHHHHSTTCEEEEEE
T ss_pred             CCCEEEEeCCCCCHHHH-HHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcC-C-CcEEEEeCCHHHhhhhccccCCEEEE
Confidence            88999999999977665 456532345899999999999999999999999 4 579999999988765 3357999997


Q ss_pred             hhh---ccC---C--------h-------hHHHHHHHHHHhhccCCcEEEEee
Q 042119          209 AAL---VGM---S--------K-------EEKLTILGHIRKYMKDGGILLVRS  240 (286)
Q Consensus       209 aal---vg~---~--------~-------~~k~~vl~~l~~~l~pgg~lv~r~  240 (286)
                      ++-   .|+   +        .       ....++|+++.+.|||||+|++.+
T Consensus       194 D~PcSg~G~~~~~pd~~~~~~~~~~~~l~~~q~~iL~~a~~~LkpGG~LvysT  246 (479)
T 2frx_A          194 DAPCSGEGVVRKDPDALKNWSPESNQEIAATQRELIDSAFHALRPGGTLVYST  246 (479)
T ss_dssp             ECCCCCGGGGGTCTTSSSSCCHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred             CCCcCCcccccCCHHHHhhcCHhHHHHHHHHHHHHHHHHHHhcCCCCEEEEec
Confidence            421   111   1        0       113478999999999999999864

>1vlm_A SAM-dependent methyltransferase; possible histamine methyltransferase, structural genomics, JCSG, protein struc initiative, PSI; 2.20A {Thermotoga maritima} SCOP: c.66.1.41

Probab=99.18  E-value=5.3e-11  Score=103.02  Aligned_cols=102  Identities=14%  Similarity=0.155  Sum_probs=78.2

Q ss_pred             HHHHHHhcCCCCCCEEEEeccCCChhhHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEccccchhh
Q 042119          119 EYTILSENGVVQPKKVAFVGSGPMPLTSIIMAKHHLTSTHFDNFDIDEAANDVARSIVASDAEFEGRMKFLTRDIMEVKE  198 (286)
Q Consensus       119 E~~~l~~~~~~~~~~VL~IG~G~lp~tai~lA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~g~l~~~i~f~~~D~~~~~~  198 (286)
                      +...+.+..  ++.+||+||||+ |..+..+++   .    +++|+|+++++.|++.         +++++++|+.+++.
T Consensus        38 ~~~~l~~~~--~~~~vLDiG~G~-G~~~~~l~~---~----~~vD~s~~~~~~a~~~---------~~~~~~~d~~~~~~   98 (219)
T 1vlm_A           38 ELQAVKCLL--PEGRGVEIGVGT-GRFAVPLKI---K----IGVEPSERMAEIARKR---------GVFVLKGTAENLPL   98 (219)
T ss_dssp             HHHHHHHHC--CSSCEEEETCTT-STTHHHHTC---C----EEEESCHHHHHHHHHT---------TCEEEECBTTBCCS
T ss_pred             HHHHHHHhC--CCCcEEEeCCCC-CHHHHHHHH---H----hccCCCHHHHHHHHhc---------CCEEEEcccccCCC
Confidence            334444444  388999999997 555566765   2    9999999999999886         47899999987665


Q ss_pred             cCCCcceeehhhhccCChhHHHHHHHHHHhhccCCcEEEEee
Q 042119          199 QLGEYDCIFLAALVGMSKEEKLTILGHIRKYMKDGGILLVRS  240 (286)
Q Consensus       199 ~l~~fD~V~~aalvg~~~~~k~~vl~~l~~~l~pgg~lv~r~  240 (286)
                      ..+.||+|+....+.. .++...+++++.+.|+|||.+++..
T Consensus        99 ~~~~fD~v~~~~~l~~-~~~~~~~l~~~~~~L~pgG~l~i~~  139 (219)
T 1vlm_A           99 KDESFDFALMVTTICF-VDDPERALKEAYRILKKGGYLIVGI  139 (219)
T ss_dssp             CTTCEEEEEEESCGGG-SSCHHHHHHHHHHHEEEEEEEEEEE
T ss_pred             CCCCeeEEEEcchHhh-ccCHHHHHHHHHHHcCCCcEEEEEE
Confidence            5457999987654321 2456789999999999999999875

>4e2x_A TCAB9; kijanose, tetronitrose, tetradeoxy sugar, sugar methylation, transferase; HET: SAH TYD; 1.40A {Micromonospora chalcea} PDB: 3ndi_A* 3ndj_A* 4e32_A* 4e33_A* 4e2y_A* 4e31_A* 4e2w_A* 4e2z_A* 4e30_A*

Probab=99.18  E-value=2.4e-11  Score=115.46  Aligned_cols=110  Identities=12%  Similarity=0.145  Sum_probs=81.9

Q ss_pred             HHHhcCCCCCCEEEEeccCCChhhHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCe-EEEEccccchhhcC
Q 042119          122 ILSENGVVQPKKVAFVGSGPMPLTSIIMAKHHLTSTHFDNFDIDEAANDVARSIVASDAEFEGRM-KFLTRDIMEVKEQL  200 (286)
Q Consensus       122 ~l~~~~~~~~~~VL~IG~G~lp~tai~lA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~g~l~~~i-~f~~~D~~~~~~~l  200 (286)
                      .+......++.+|||||||+ |..+..+++   .|.+|+|+|+|+++++.|++.    | +.... .|..+++.+++...
T Consensus        99 l~~~~~~~~~~~VLDiGcG~-G~~~~~l~~---~g~~v~gvD~s~~~~~~a~~~----~-~~~~~~~~~~~~~~~l~~~~  169 (416)
T 4e2x_A           99 FLATELTGPDPFIVEIGCND-GIMLRTIQE---AGVRHLGFEPSSGVAAKAREK----G-IRVRTDFFEKATADDVRRTE  169 (416)
T ss_dssp             HHHTTTCSSSCEEEEETCTT-TTTHHHHHH---TTCEEEEECCCHHHHHHHHTT----T-CCEECSCCSHHHHHHHHHHH
T ss_pred             HHHHhCCCCCCEEEEecCCC-CHHHHHHHH---cCCcEEEECCCHHHHHHHHHc----C-CCcceeeechhhHhhcccCC
Confidence            33444567889999999997 667777887   578999999999999999876    4 22222 24445555555545


Q ss_pred             CCcceeehhhhccCChhHHHHHHHHHHhhccCCcEEEEeec
Q 042119          201 GEYDCIFLAALVGMSKEEKLTILGHIRKYMKDGGILLVRSA  241 (286)
Q Consensus       201 ~~fD~V~~aalvg~~~~~k~~vl~~l~~~l~pgg~lv~r~~  241 (286)
                      +.||+|+....+.+ .++...+++++++.|||||++++...
T Consensus       170 ~~fD~I~~~~vl~h-~~d~~~~l~~~~r~LkpgG~l~i~~~  209 (416)
T 4e2x_A          170 GPANVIYAANTLCH-IPYVQSVLEGVDALLAPDGVFVFEDP  209 (416)
T ss_dssp             CCEEEEEEESCGGG-CTTHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred             CCEEEEEECChHHh-cCCHHHHHHHHHHHcCCCeEEEEEeC
Confidence            68999986654422 25778999999999999999999753

>3m6w_A RRNA methylase; rRNA methyltransferase, 5-methylcytidine, RSMF, adoMet, MULT specific, methyltransferase, transferase; HET: CXM SAM; 1.30A {Thermus thermophilus} PDB: 3m6v_A* 3m6u_A* 3m6x_A*

Probab=99.18  E-value=8.3e-11  Score=114.63  Aligned_cols=110  Identities=15%  Similarity=0.101  Sum_probs=84.9

Q ss_pred             CCCCCCEEEEeccCCChhhHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEccccchhh-cCCCcce
Q 042119          127 GVVQPKKVAFVGSGPMPLTSIIMAKHHLTSTHFDNFDIDEAANDVARSIVASDAEFEGRMKFLTRDIMEVKE-QLGEYDC  205 (286)
Q Consensus       127 ~~~~~~~VL~IG~G~lp~tai~lA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~g~l~~~i~f~~~D~~~~~~-~l~~fD~  205 (286)
                      .+.++.+|||+||||++.| +.+|+....+++|+++|+|+.+++.+++++++.| +.  ++++++|+.++.. ..+.||+
T Consensus        98 ~~~~g~~VLDlgaGpG~kt-~~LA~~~~~~g~V~AvDis~~~l~~a~~n~~r~G-~~--v~~~~~Da~~l~~~~~~~FD~  173 (464)
T 3m6w_A           98 DPKPGERVLDLAAAPGGKT-THLAARMGGKGLLLANEVDGKRVRGLLENVERWG-AP--LAVTQAPPRALAEAFGTYFHR  173 (464)
T ss_dssp             CCCTTCEEEESSCTTCHHH-HHHHHHTTTCSEEEEECSCHHHHHHHHHHHHHHC-CC--CEEECSCHHHHHHHHCSCEEE
T ss_pred             CcCCCCEEEEEcCCcCHHH-HHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcC-Ce--EEEEECCHHHhhhhccccCCE
Confidence            4678899999999997766 4555532344799999999999999999999999 44  9999999988763 3357999


Q ss_pred             eehhhh---ccC---Ch---------------hHHHHHHHHHHhhccCCcEEEEee
Q 042119          206 IFLAAL---VGM---SK---------------EEKLTILGHIRKYMKDGGILLVRS  240 (286)
Q Consensus       206 V~~aal---vg~---~~---------------~~k~~vl~~l~~~l~pgg~lv~r~  240 (286)
                      |++++-   .|+   +.               ....++++++.+.|||||+|++.+
T Consensus       174 Il~D~PcSg~G~~rr~pd~~~~~~~~~~~~l~~~Q~~iL~~a~~~LkpGG~LvysT  229 (464)
T 3m6w_A          174 VLLDAPCSGEGMFRKDREAARHWGPSAPKRMAEVQKALLAQASRLLGPGGVLVYST  229 (464)
T ss_dssp             EEEECCCCCGGGTTTCTTSGGGCCTTHHHHHHHHHHHHHHHHHTTEEEEEEEEEEE
T ss_pred             EEECCCcCCccccccChHHhhhcCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEe
Confidence            996431   111   11               112679999999999999999854

>2yx1_A Hypothetical protein MJ0883; methyl transferase, tRNA modification enzyme, transferase; HET: SFG; 2.20A {Methanocaldococcus jannaschii} PDB: 2zzn_A* 3ay0_A* 2zzm_A*

Probab=99.18  E-value=5.5e-11  Score=110.81  Aligned_cols=98  Identities=15%  Similarity=0.199  Sum_probs=82.1

Q ss_pred             CCCCEEEEeccCCChhhHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEccccchhhcCCCcceeeh
Q 042119          129 VQPKKVAFVGSGPMPLTSIIMAKHHLTSTHFDNFDIDEAANDVARSIVASDAEFEGRMKFLTRDIMEVKEQLGEYDCIFL  208 (286)
Q Consensus       129 ~~~~~VL~IG~G~lp~tai~lA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~g~l~~~i~f~~~D~~~~~~~l~~fD~V~~  208 (286)
                      .++.+|||+|||++++ ++. |+   .+.+|+++|+|+++++.|+++++..| +.++++|+++|+.+..   ..||+|++
T Consensus       194 ~~~~~VLDlg~G~G~~-~l~-a~---~~~~V~~vD~s~~ai~~a~~n~~~n~-l~~~v~~~~~D~~~~~---~~fD~Vi~  264 (336)
T 2yx1_A          194 SLNDVVVDMFAGVGPF-SIA-CK---NAKKIYAIDINPHAIELLKKNIKLNK-LEHKIIPILSDVREVD---VKGNRVIM  264 (336)
T ss_dssp             CTTCEEEETTCTTSHH-HHH-TT---TSSEEEEEESCHHHHHHHHHHHHHTT-CTTTEEEEESCGGGCC---CCEEEEEE
T ss_pred             CCCCEEEEccCccCHH-HHh-cc---CCCEEEEEECCHHHHHHHHHHHHHcC-CCCcEEEEECChHHhc---CCCcEEEE
Confidence            5789999999997555 455 76   57899999999999999999999999 6778999999998765   68999997


Q ss_pred             hhhccCChhHHHHHHHHHHhhccCCcEEEEee
Q 042119          209 AALVGMSKEEKLTILGHIRKYMKDGGILLVRS  240 (286)
Q Consensus       209 aalvg~~~~~k~~vl~~l~~~l~pgg~lv~r~  240 (286)
                      +-.-     ...++++.+.+.++|||.+++.+
T Consensus       265 dpP~-----~~~~~l~~~~~~L~~gG~l~~~~  291 (336)
T 2yx1_A          265 NLPK-----FAHKFIDKALDIVEEGGVIHYYT  291 (336)
T ss_dssp             CCTT-----TGGGGHHHHHHHEEEEEEEEEEE
T ss_pred             CCcH-----hHHHHHHHHHHHcCCCCEEEEEE
Confidence            6221     11278999999999999998875

>1wy7_A Hypothetical protein PH1948; seven-stranded beta sheet, methyltransferase fold, structura genomics, transferase; HET: SAH; 2.20A {Pyrococcus horikoshii} SCOP: c.66.1.32

Probab=99.18  E-value=6.3e-10  Score=94.96  Aligned_cols=104  Identities=17%  Similarity=0.150  Sum_probs=78.2

Q ss_pred             hcCCCCCCEEEEeccCCChhhHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEccccchhhcCCCcc
Q 042119          125 ENGVVQPKKVAFVGSGPMPLTSIIMAKHHLTSTHFDNFDIDEAANDVARSIVASDAEFEGRMKFLTRDIMEVKEQLGEYD  204 (286)
Q Consensus       125 ~~~~~~~~~VL~IG~G~lp~tai~lA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~g~l~~~i~f~~~D~~~~~~~l~~fD  204 (286)
                      .....++.+|||+|||+ |..++.+++.  ...+|+|+|+|+.+++.|++.+...| +  +++++++|+.+++   ..||
T Consensus        44 ~~~~~~~~~vlD~g~G~-G~~~~~l~~~--~~~~v~~vD~~~~~~~~a~~~~~~~~-~--~~~~~~~d~~~~~---~~~D  114 (207)
T 1wy7_A           44 SLGDIEGKVVADLGAGT-GVLSYGALLL--GAKEVICVEVDKEAVDVLIENLGEFK-G--KFKVFIGDVSEFN---SRVD  114 (207)
T ss_dssp             HTTSSTTCEEEEETCTT-CHHHHHHHHT--TCSEEEEEESCHHHHHHHHHHTGGGT-T--SEEEEESCGGGCC---CCCS
T ss_pred             HcCCCCcCEEEEeeCCC-CHHHHHHHHc--CCCEEEEEECCHHHHHHHHHHHHHcC-C--CEEEEECchHHcC---CCCC
Confidence            33456789999999997 5556777772  33489999999999999999998888 4  7999999998753   4799


Q ss_pred             eeehhhhccC-ChhHHHHHHHHHHhhccCCcEEEEe
Q 042119          205 CIFLAALVGM-SKEEKLTILGHIRKYMKDGGILLVR  239 (286)
Q Consensus       205 ~V~~aalvg~-~~~~k~~vl~~l~~~l~pgg~lv~r  239 (286)
                      +|+...-.+. ......++++.+.+.+  |++++..
T Consensus       115 ~v~~~~p~~~~~~~~~~~~l~~~~~~l--~~~~~~~  148 (207)
T 1wy7_A          115 IVIMNPPFGSQRKHADRPFLLKAFEIS--DVVYSIH  148 (207)
T ss_dssp             EEEECCCCSSSSTTTTHHHHHHHHHHC--SEEEEEE
T ss_pred             EEEEcCCCccccCCchHHHHHHHHHhc--CcEEEEE
Confidence            9997642211 1133456889999888  6766655

>3k6r_A Putative transferase PH0793; structural genomics, PSI structure initiative, midwest center for structural genomic unknown function; 2.10A {Pyrococcus horikoshii} PDB: 3a25_A* 3a26_A*

Probab=99.17  E-value=8.7e-11  Score=107.37  Aligned_cols=103  Identities=15%  Similarity=0.094  Sum_probs=84.0

Q ss_pred             CCCCCEEEEeccCCChhhHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEccccchhhcCCCcceee
Q 042119          128 VVQPKKVAFVGSGPMPLTSIIMAKHHLTSTHFDNFDIDEAANDVARSIVASDAEFEGRMKFLTRDIMEVKEQLGEYDCIF  207 (286)
Q Consensus       128 ~~~~~~VL~IG~G~lp~tai~lA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~g~l~~~i~f~~~D~~~~~~~l~~fD~V~  207 (286)
                      .+++++|||+|||.++++ +.+|++  ..++|+++|+||.+++.++++++..| ++++++++++|+.++... ..||.|+
T Consensus       123 ~~~g~~VlD~~aG~G~~~-i~~a~~--g~~~V~avD~np~a~~~~~~N~~~N~-v~~~v~~~~~D~~~~~~~-~~~D~Vi  197 (278)
T 3k6r_A          123 AKPDELVVDMFAGIGHLS-LPIAVY--GKAKVIAIEKDPYTFKFLVENIHLNK-VEDRMSAYNMDNRDFPGE-NIADRIL  197 (278)
T ss_dssp             CCTTCEEEETTCTTTTTT-HHHHHH--TCCEEEEECCCHHHHHHHHHHHHHTT-CTTTEEEECSCTTTCCCC-SCEEEEE
T ss_pred             cCCCCEEEEecCcCcHHH-HHHHHh--cCCeEEEEECCHHHHHHHHHHHHHcC-CCCcEEEEeCcHHHhccc-cCCCEEE
Confidence            478999999999987665 666762  55799999999999999999999999 899999999999886643 4799988


Q ss_pred             hhhhccCChhHHHHHHHHHHhhccCCcEEEEee
Q 042119          208 LAALVGMSKEEKLTILGHIRKYMKDGGILLVRS  240 (286)
Q Consensus       208 ~aalvg~~~~~k~~vl~~l~~~l~pgg~lv~r~  240 (286)
                      +.-.     ....+++....+.++|||.|.+..
T Consensus       198 ~~~p-----~~~~~~l~~a~~~lk~gG~ih~~~  225 (278)
T 3k6r_A          198 MGYV-----VRTHEFIPKALSIAKDGAIIHYHN  225 (278)
T ss_dssp             ECCC-----SSGGGGHHHHHHHEEEEEEEEEEE
T ss_pred             ECCC-----CcHHHHHHHHHHHcCCCCEEEEEe
Confidence            6532     122357888899999999987653

>4dmg_A Putative uncharacterized protein TTHA1493; rRNA, methyltransferase, S-adenosyl-methionine, 23S ribosoma transferase; HET: SAM; 1.70A {Thermus thermophilus}

Probab=99.17  E-value=1.3e-10  Score=111.05  Aligned_cols=107  Identities=15%  Similarity=0.096  Sum_probs=82.6

Q ss_pred             CCCCCEEEEeccCCChhhHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEccccchhhcC-CCccee
Q 042119          128 VVQPKKVAFVGSGPMPLTSIIMAKHHLTSTHFDNFDIDEAANDVARSIVASDAEFEGRMKFLTRDIMEVKEQL-GEYDCI  206 (286)
Q Consensus       128 ~~~~~~VL~IG~G~lp~tai~lA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~g~l~~~i~f~~~D~~~~~~~l-~~fD~V  206 (286)
                      ..++++|||+|||+++ -++.+|+   .|+.|+++|+|+.+++.|+++++..| +..  ++.++|+.+....+ +.||+|
T Consensus       212 ~~~g~~VLDlg~GtG~-~sl~~a~---~ga~V~avDis~~al~~a~~n~~~ng-~~~--~~~~~D~~~~l~~~~~~fD~I  284 (393)
T 4dmg_A          212 VRPGERVLDVYSYVGG-FALRAAR---KGAYALAVDKDLEALGVLDQAALRLG-LRV--DIRHGEALPTLRGLEGPFHHV  284 (393)
T ss_dssp             CCTTCEEEEESCTTTH-HHHHHHH---TTCEEEEEESCHHHHHHHHHHHHHHT-CCC--EEEESCHHHHHHTCCCCEEEE
T ss_pred             hcCCCeEEEcccchhH-HHHHHHH---cCCeEEEEECCHHHHHHHHHHHHHhC-CCC--cEEEccHHHHHHHhcCCCCEE
Confidence            3568999999999755 4577777   57889999999999999999999999 543  57799998865443 359999


Q ss_pred             ehhhhc-cCC-------hhHHHHHHHHHHhhccCCcEEEEeec
Q 042119          207 FLAALV-GMS-------KEEKLTILGHIRKYMKDGGILLVRSA  241 (286)
Q Consensus       207 ~~aalv-g~~-------~~~k~~vl~~l~~~l~pgg~lv~r~~  241 (286)
                      +++.-- ...       .....+++..+.+.|+|||.+++-+-
T Consensus       285 i~dpP~f~~~~~~~~~~~~~~~~ll~~a~~~LkpGG~Lv~~s~  327 (393)
T 4dmg_A          285 LLDPPTLVKRPEELPAMKRHLVDLVREALRLLAEEGFLWLSSC  327 (393)
T ss_dssp             EECCCCCCSSGGGHHHHHHHHHHHHHHHHHTEEEEEEEEEEEC
T ss_pred             EECCCcCCCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEEC
Confidence            975321 000       13456899999999999999997653

>2as0_A Hypothetical protein PH1915; RNA methyltransferase, structural genomics, PSI, protein structure initiative; 1.80A {Pyrococcus horikoshii} SCOP: b.122.1.9 c.66.1.51

Probab=99.17  E-value=1.1e-10  Score=110.78  Aligned_cols=109  Identities=21%  Similarity=0.150  Sum_probs=85.3

Q ss_pred             CCCCEEEEeccCCChhhHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEccccchhhc----CCCcc
Q 042119          129 VQPKKVAFVGSGPMPLTSIIMAKHHLTSTHFDNFDIDEAANDVARSIVASDAEFEGRMKFLTRDIMEVKEQ----LGEYD  204 (286)
Q Consensus       129 ~~~~~VL~IG~G~lp~tai~lA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~g~l~~~i~f~~~D~~~~~~~----l~~fD  204 (286)
                      .++++|||+|||+ |.-++.+|+  ....+|+++|+|+++++.|+++++..| +.++++|+++|+.+....    ...||
T Consensus       216 ~~~~~VLDl~~G~-G~~~~~la~--~g~~~v~~vD~s~~~l~~a~~n~~~n~-~~~~v~~~~~d~~~~~~~~~~~~~~fD  291 (396)
T 2as0_A          216 QPGDRVLDVFTYT-GGFAIHAAI--AGADEVIGIDKSPRAIETAKENAKLNG-VEDRMKFIVGSAFEEMEKLQKKGEKFD  291 (396)
T ss_dssp             CTTCEEEETTCTT-THHHHHHHH--TTCSEEEEEESCHHHHHHHHHHHHHTT-CGGGEEEEESCHHHHHHHHHHTTCCEE
T ss_pred             hCCCeEEEecCCC-CHHHHHHHH--CCCCEEEEEeCCHHHHHHHHHHHHHcC-CCccceEEECCHHHHHHHHHhhCCCCC
Confidence            4789999999997 455677777  223499999999999999999999999 666899999999876543    34799


Q ss_pred             eeehhhhc-cCC-------hhHHHHHHHHHHhhccCCcEEEEeec
Q 042119          205 CIFLAALV-GMS-------KEEKLTILGHIRKYMKDGGILLVRSA  241 (286)
Q Consensus       205 ~V~~aalv-g~~-------~~~k~~vl~~l~~~l~pgg~lv~r~~  241 (286)
                      +|+++.-- +..       .....+++..+.+.|+|||.+++.+-
T Consensus       292 ~Vi~dpP~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lv~~~~  336 (396)
T 2as0_A          292 IVVLDPPAFVQHEKDLKAGLRAYFNVNFAGLNLVKDGGILVTCSC  336 (396)
T ss_dssp             EEEECCCCSCSSGGGHHHHHHHHHHHHHHHHTTEEEEEEEEEEEC
T ss_pred             EEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEEC
Confidence            99975311 111       14456789999999999999888763

>4azs_A Methyltransferase WBDD; kinase; HET: AMP SAM; 2.15A {Escherichia coli} PDB: 4azt_A* 4azv_A* 4azw_A*

Probab=99.16  E-value=3.1e-11  Score=120.05  Aligned_cols=103  Identities=16%  Similarity=0.195  Sum_probs=77.0

Q ss_pred             CCCCEEEEeccCCChhhHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEccccchhhc--CCCccee
Q 042119          129 VQPKKVAFVGSGPMPLTSIIMAKHHLTSTHFDNFDIDEAANDVARSIVASDAEFEGRMKFLTRDIMEVKEQ--LGEYDCI  206 (286)
Q Consensus       129 ~~~~~VL~IG~G~lp~tai~lA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~g~l~~~i~f~~~D~~~~~~~--l~~fD~V  206 (286)
                      ..|.|||||||| +|+-+..||+   .|++|||||+++.+++.|+..+...|.  -+|+|.++|+.++...  .+.||+|
T Consensus        65 ~~~~~vLDvGCG-~G~~~~~la~---~ga~V~giD~~~~~i~~a~~~a~~~~~--~~~~~~~~~~~~~~~~~~~~~fD~v  138 (569)
T 4azs_A           65 GRPLNVLDLGCA-QGFFSLSLAS---KGATIVGIDFQQENINVCRALAEENPD--FAAEFRVGRIEEVIAALEEGEFDLA  138 (569)
T ss_dssp             TSCCEEEEETCT-TSHHHHHHHH---TTCEEEEEESCHHHHHHHHHHHHTSTT--SEEEEEECCHHHHHHHCCTTSCSEE
T ss_pred             CCCCeEEEECCC-CcHHHHHHHh---CCCEEEEECCCHHHHHHHHHHHHhcCC--CceEEEECCHHHHhhhccCCCccEE
Confidence            467899999999 6889999999   799999999999999999999988873  4799999999987543  3579999


Q ss_pred             ehhhhcc-CChhHHHHHHHHHHhhccCCcEEE
Q 042119          207 FLAALVG-MSKEEKLTILGHIRKYMKDGGILL  237 (286)
Q Consensus       207 ~~aalvg-~~~~~k~~vl~~l~~~l~pgg~lv  237 (286)
                      +....+. .+.++...-+..+.+.+++++...
T Consensus       139 ~~~e~~ehv~~~~~~~~~~~~~~tl~~~~~~~  170 (569)
T 4azs_A          139 IGLSVFHHIVHLHGIDEVKRLLSRLADVTQAV  170 (569)
T ss_dssp             EEESCHHHHHHHHCHHHHHHHHHHHHHHSSEE
T ss_pred             EECcchhcCCCHHHHHHHHHHHHHhcccccee
Confidence            7554431 111222223345666667766443

>1ej0_A FTSJ; methyltransferase, adoMet, adenosyl methionine, heat shock proteins, 23S ribosomal RNA; HET: SAM; 1.50A {Escherichia coli} SCOP: c.66.1.2 PDB: 1eiz_A*

Probab=99.15  E-value=8.6e-11  Score=96.13  Aligned_cols=137  Identities=12%  Similarity=0.108  Sum_probs=88.5

Q ss_pred             CCCCCEEEEeccCCChhhHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEccccchh--------hc
Q 042119          128 VVQPKKVAFVGSGPMPLTSIIMAKHHLTSTHFDNFDIDEAANDVARSIVASDAEFEGRMKFLTRDIMEVK--------EQ  199 (286)
Q Consensus       128 ~~~~~~VL~IG~G~lp~tai~lA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~g~l~~~i~f~~~D~~~~~--------~~  199 (286)
                      ..++.+|||+|||+ |..+..+++...++.+|+++|+++ +++.            .+++++++|+.+.+        ..
T Consensus        20 ~~~~~~vLd~G~G~-G~~~~~l~~~~~~~~~v~~~D~~~-~~~~------------~~~~~~~~d~~~~~~~~~~~~~~~   85 (180)
T 1ej0_A           20 FKPGMTVVDLGAAP-GGWSQYVVTQIGGKGRIIACDLLP-MDPI------------VGVDFLQGDFRDELVMKALLERVG   85 (180)
T ss_dssp             CCTTCEEEEESCTT-CHHHHHHHHHHCTTCEEEEEESSC-CCCC------------TTEEEEESCTTSHHHHHHHHHHHT
T ss_pred             CCCCCeEEEeCCCC-CHHHHHHHHHhCCCCeEEEEECcc-cccc------------CcEEEEEcccccchhhhhhhccCC
Confidence            57788999999997 556667777323679999999999 6421            47999999998764        34


Q ss_pred             CCCcceeehhhhccC---ChhH-H------HHHHHHHHhhccCCcEEEEeecCcceeeecccCCcccc-cCcEEEEEecC
Q 042119          200 LGEYDCIFLAALVGM---SKEE-K------LTILGHIRKYMKDGGILLVRSAKGARAFLYPVVVEHDL-LDFEVLSAVHP  268 (286)
Q Consensus       200 l~~fD~V~~aalvg~---~~~~-k------~~vl~~l~~~l~pgg~lv~r~~~g~r~~lyp~v~~~~l-~gf~~~~~~~P  268 (286)
                      .+.||+|+......+   ...+ .      ..+++++.+.|+|||.+++.....-..   ..+ ...+ ..|+.+.+.+|
T Consensus        86 ~~~~D~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~~~~~~---~~~-~~~~~~~~~~~~~~~~  161 (180)
T 1ej0_A           86 DSKVQVVMSDMAPNMSGTPAVDIPRAMYLVELALEMCRDVLAPGGSFVVKVFQGEGF---DEY-LREIRSLFTKVKVRKP  161 (180)
T ss_dssp             TCCEEEEEECCCCCCCSCHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEEESSTTH---HHH-HHHHHHHEEEEEEECC
T ss_pred             CCceeEEEECCCccccCCCccchHHHHHHHHHHHHHHHHHcCCCcEEEEEEecCCcH---HHH-HHHHHHhhhhEEeecC
Confidence            457999997543211   1011 1      589999999999999999865322100   000 0011 24777776666


Q ss_pred             ccc---ceeeeEEEeec
Q 042119          269 NDD---VINSVVLVRNS  282 (286)
Q Consensus       269 ~~~---vinsvi~~r~~  282 (286)
                      ...   .-..++++++.
T Consensus       162 ~~~~~~~~~~~~~~~~~  178 (180)
T 1ej0_A          162 DSSRARSREVYIVATGR  178 (180)
T ss_dssp             TTSCTTCCEEEEEEEEE
T ss_pred             CcccccCceEEEEEccC
Confidence            542   22335666553

>3tm4_A TRNA (guanine N2-)-methyltransferase TRM14; rossmann fold, thump domain, tRNA methyltransferase; HET: SAM; 1.95A {Pyrococcus furiosus} PDB: 3tlj_A* 3tm5_A*

Probab=99.15  E-value=1.9e-10  Score=108.62  Aligned_cols=107  Identities=11%  Similarity=0.065  Sum_probs=81.8

Q ss_pred             CCCCCEEEEeccCCChhhHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEccccchhhcCCCcceee
Q 042119          128 VVQPKKVAFVGSGPMPLTSIIMAKHHLTSTHFDNFDIDEAANDVARSIVASDAEFEGRMKFLTRDIMEVKEQLGEYDCIF  207 (286)
Q Consensus       128 ~~~~~~VL~IG~G~lp~tai~lA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~g~l~~~i~f~~~D~~~~~~~l~~fD~V~  207 (286)
                      ..++.+|||+|||+ |..++.+|+ ..+.++|+|+|+|+.+++.|+++++..| +.++++|.++|+.+++...+.||+|+
T Consensus       215 ~~~~~~vLD~gCGs-G~~~i~~a~-~~~~~~v~g~Dis~~~l~~A~~n~~~~g-l~~~i~~~~~D~~~~~~~~~~fD~Ii  291 (373)
T 3tm4_A          215 ELDGGSVLDPMCGS-GTILIELAL-RRYSGEIIGIEKYRKHLIGAEMNALAAG-VLDKIKFIQGDATQLSQYVDSVDFAI  291 (373)
T ss_dssp             TCCSCCEEETTCTT-CHHHHHHHH-TTCCSCEEEEESCHHHHHHHHHHHHHTT-CGGGCEEEECCGGGGGGTCSCEEEEE
T ss_pred             cCCCCEEEEccCcC-cHHHHHHHH-hCCCCeEEEEeCCHHHHHHHHHHHHHcC-CCCceEEEECChhhCCcccCCcCEEE
Confidence            57889999999997 556677777 2334499999999999999999999999 77899999999999876667899998


Q ss_pred             hhhhccC-------ChhHHHHHHHHHHhhccCCcEEEE
Q 042119          208 LAALVGM-------SKEEKLTILGHIRKYMKDGGILLV  238 (286)
Q Consensus       208 ~aalvg~-------~~~~k~~vl~~l~~~l~pgg~lv~  238 (286)
                      ..---|.       ......++++.+.+.+ +|+.+++
T Consensus       292 ~npPyg~r~~~~~~~~~ly~~~~~~l~r~l-~g~~~~i  328 (373)
T 3tm4_A          292 SNLPYGLKIGKKSMIPDLYMKFFNELAKVL-EKRGVFI  328 (373)
T ss_dssp             EECCCC------CCHHHHHHHHHHHHHHHE-EEEEEEE
T ss_pred             ECCCCCcccCcchhHHHHHHHHHHHHHHHc-CCeEEEE
Confidence            7422111       1123467889999988 3333333

>1sqg_A SUN protein, FMU protein; rossmann-fold, mixed beta sheet, methyltransferase-fold, RNA-binding domain; 1.65A {Escherichia coli} SCOP: a.79.1.3 c.66.1.38 PDB: 1sqf_A

Probab=99.14  E-value=2.4e-10  Score=109.76  Aligned_cols=109  Identities=17%  Similarity=0.153  Sum_probs=84.6

Q ss_pred             CCCCCCEEEEeccCCChhhHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEccccchhh--cCCCcc
Q 042119          127 GVVQPKKVAFVGSGPMPLTSIIMAKHHLTSTHFDNFDIDEAANDVARSIVASDAEFEGRMKFLTRDIMEVKE--QLGEYD  204 (286)
Q Consensus       127 ~~~~~~~VL~IG~G~lp~tai~lA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~g~l~~~i~f~~~D~~~~~~--~l~~fD  204 (286)
                      .+.++.+|||+||||++.|. .+|+ ..++++|+++|+|+.+++.+++.+++.| +  +++++++|+.+...  ..+.||
T Consensus       243 ~~~~g~~VLDlgaG~G~~t~-~la~-~~~~~~v~a~D~~~~~l~~~~~~~~~~g-~--~~~~~~~D~~~~~~~~~~~~fD  317 (429)
T 1sqg_A          243 APQNGEHILDLCAAPGGKTT-HILE-VAPEAQVVAVDIDEQRLSRVYDNLKRLG-M--KATVKQGDGRYPSQWCGEQQFD  317 (429)
T ss_dssp             CCCTTCEEEEESCTTCHHHH-HHHH-HCTTCEEEEEESSTTTHHHHHHHHHHTT-C--CCEEEECCTTCTHHHHTTCCEE
T ss_pred             CCCCcCeEEEECCCchHHHH-HHHH-HcCCCEEEEECCCHHHHHHHHHHHHHcC-C--CeEEEeCchhhchhhcccCCCC
Confidence            45788999999999977665 5555 3566899999999999999999999999 4  58999999987653  224799


Q ss_pred             eeehhh---hcc---CChhH---------------HHHHHHHHHhhccCCcEEEEee
Q 042119          205 CIFLAA---LVG---MSKEE---------------KLTILGHIRKYMKDGGILLVRS  240 (286)
Q Consensus       205 ~V~~aa---lvg---~~~~~---------------k~~vl~~l~~~l~pgg~lv~r~  240 (286)
                      .|++++   ..|   ...+.               ..++++++.+.|||||++++.+
T Consensus       318 ~Vl~D~Pcsg~g~~~~~p~~~~~~~~~~~~~l~~~q~~~L~~a~~~LkpGG~lvyst  374 (429)
T 1sqg_A          318 RILLDAPCSATGVIRRHPDIKWLRRDRDIPELAQLQSEILDAIWPHLKTGGTLVYAT  374 (429)
T ss_dssp             EEEEECCCCCGGGTTTCTTHHHHCCTTHHHHHHHHHHHHHHHHGGGEEEEEEEEEEE
T ss_pred             EEEEeCCCCcccccCCCcchhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEE
Confidence            999743   111   11111               1478999999999999999975

>3c0k_A UPF0064 protein YCCW; PUA domain, adoMet dependent methyltransferase fold; 2.00A {Escherichia coli K12}

Probab=99.14  E-value=1.8e-10  Score=109.43  Aligned_cols=109  Identities=19%  Similarity=0.186  Sum_probs=85.6

Q ss_pred             CCCCEEEEeccCCChhhHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCC-CCCeEEEEccccchhhc----CCCc
Q 042119          129 VQPKKVAFVGSGPMPLTSIIMAKHHLTSTHFDNFDIDEAANDVARSIVASDAEF-EGRMKFLTRDIMEVKEQ----LGEY  203 (286)
Q Consensus       129 ~~~~~VL~IG~G~lp~tai~lA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~g~l-~~~i~f~~~D~~~~~~~----l~~f  203 (286)
                      .++++|||+|||++++ ++.+|+.  ...+|+++|+|+++++.|+++++..| + .++++|+++|+.+....    -..|
T Consensus       219 ~~~~~VLDl~cG~G~~-sl~la~~--g~~~V~~vD~s~~al~~a~~n~~~ng-l~~~~v~~~~~D~~~~~~~~~~~~~~f  294 (396)
T 3c0k_A          219 VENKRVLNCFSYTGGF-AVSALMG--GCSQVVSVDTSQEALDIARQNVELNK-LDLSKAEFVRDDVFKLLRTYRDRGEKF  294 (396)
T ss_dssp             CTTCEEEEESCTTCSH-HHHHHHT--TCSEEEEEESCHHHHHHHHHHHHHTT-CCGGGEEEEESCHHHHHHHHHHTTCCE
T ss_pred             hCCCeEEEeeccCCHH-HHHHHHC--CCCEEEEEECCHHHHHHHHHHHHHcC-CCccceEEEECCHHHHHHHHHhcCCCC
Confidence            5788999999997555 5677771  24599999999999999999999988 6 55899999999886543    2479


Q ss_pred             ceeehhhhc-c-------CChhHHHHHHHHHHhhccCCcEEEEeec
Q 042119          204 DCIFLAALV-G-------MSKEEKLTILGHIRKYMKDGGILLVRSA  241 (286)
Q Consensus       204 D~V~~aalv-g-------~~~~~k~~vl~~l~~~l~pgg~lv~r~~  241 (286)
                      |+|+++.-- +       .......+++..+.+.|+|||++++.+.
T Consensus       295 D~Ii~dpP~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~  340 (396)
T 3c0k_A          295 DVIVMDPPKFVENKSQLMGACRGYKDINMLAIQLLNEGGILLTFSC  340 (396)
T ss_dssp             EEEEECCSSTTTCSSSSSCCCTHHHHHHHHHHHTEEEEEEEEEEEC
T ss_pred             CEEEECCCCCCCChhHHHHHHHHHHHHHHHHHHhcCCCcEEEEEeC
Confidence            999986311 0       0114566899999999999999998763

>3frh_A 16S rRNA methylase; methyltransferase domain, helical N-terminal domain, methyltransferase, plasmid, transferase; HET: SAH; 1.20A {Escherichia coli} PDB: 3fri_A* 3b89_A*

Probab=99.13  E-value=1.8e-10  Score=103.47  Aligned_cols=102  Identities=14%  Similarity=0.168  Sum_probs=78.6

Q ss_pred             CCCCEEEEeccCCChhhHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEccccchhhcCCCcceeeh
Q 042119          129 VQPKKVAFVGSGPMPLTSIIMAKHHLTSTHFDNFDIDEAANDVARSIVASDAEFEGRMKFLTRDIMEVKEQLGEYDCIFL  208 (286)
Q Consensus       129 ~~~~~VL~IG~G~lp~tai~lA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~g~l~~~i~f~~~D~~~~~~~l~~fD~V~~  208 (286)
                      .+|.+|||||||.+|++.-++     ++.+++++|||+.+++.+++.+...|   .+.+|.++|....+.. +.||+|+.
T Consensus       104 ~~p~~VLDlGCG~gpLal~~~-----~~~~y~a~DId~~~i~~ar~~~~~~g---~~~~~~v~D~~~~~~~-~~~DvvLl  174 (253)
T 3frh_A          104 ETPRRVLDIACGLNPLALYER-----GIASVWGCDIHQGLGDVITPFAREKD---WDFTFALQDVLCAPPA-EAGDLALI  174 (253)
T ss_dssp             CCCSEEEEETCTTTHHHHHHT-----TCSEEEEEESBHHHHHHHHHHHHHTT---CEEEEEECCTTTSCCC-CBCSEEEE
T ss_pred             CCCCeEEEecCCccHHHHHhc-----cCCeEEEEeCCHHHHHHHHHHHHhcC---CCceEEEeecccCCCC-CCcchHHH
Confidence            568999999999877764433     78999999999999999999988877   4789999998764433 47999975


Q ss_pred             hhhc-cCChhHHHHHHHHHHhhccCCcEEEEee
Q 042119          209 AALV-GMSKEEKLTILGHIRKYMKDGGILLVRS  240 (286)
Q Consensus       209 aalv-g~~~~~k~~vl~~l~~~l~pgg~lv~r~  240 (286)
                      .-++ .+..++|...+ .+...|++++++|--.
T Consensus       175 lk~lh~LE~q~~~~~~-~ll~aL~~~~vvVsfP  206 (253)
T 3frh_A          175 FKLLPLLEREQAGSAM-ALLQSLNTPRMAVSFP  206 (253)
T ss_dssp             ESCHHHHHHHSTTHHH-HHHHHCBCSEEEEEEE
T ss_pred             HHHHHHhhhhchhhHH-HHHHHhcCCCEEEEcC
Confidence            5222 22334555555 8888999999888754

>3cc8_A Putative methyltransferase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS transferase; 1.64A {Bacillus cereus}

Probab=99.13  E-value=1.1e-10  Score=100.27  Aligned_cols=98  Identities=14%  Similarity=0.288  Sum_probs=76.2

Q ss_pred             CCCCEEEEeccCCChhhHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEccccch--hhcCCCccee
Q 042119          129 VQPKKVAFVGSGPMPLTSIIMAKHHLTSTHFDNFDIDEAANDVARSIVASDAEFEGRMKFLTRDIMEV--KEQLGEYDCI  206 (286)
Q Consensus       129 ~~~~~VL~IG~G~lp~tai~lA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~g~l~~~i~f~~~D~~~~--~~~l~~fD~V  206 (286)
                      .++.+|||||||+ |..+..+++   .|.+|+++|+|+++++.|++..         .+++++|+.+.  +...+.||+|
T Consensus        31 ~~~~~vLdiG~G~-G~~~~~l~~---~~~~~~~~D~~~~~~~~~~~~~---------~~~~~~d~~~~~~~~~~~~fD~v   97 (230)
T 3cc8_A           31 KEWKEVLDIGCSS-GALGAAIKE---NGTRVSGIEAFPEAAEQAKEKL---------DHVVLGDIETMDMPYEEEQFDCV   97 (230)
T ss_dssp             TTCSEEEEETCTT-SHHHHHHHT---TTCEEEEEESSHHHHHHHHTTS---------SEEEESCTTTCCCCSCTTCEEEE
T ss_pred             cCCCcEEEeCCCC-CHHHHHHHh---cCCeEEEEeCCHHHHHHHHHhC---------CcEEEcchhhcCCCCCCCccCEE
Confidence            6789999999996 566677777   2699999999999999888641         27899998763  2233579999


Q ss_pred             ehhhhccCChhHHHHHHHHHHhhccCCcEEEEee
Q 042119          207 FLAALVGMSKEEKLTILGHIRKYMKDGGILLVRS  240 (286)
Q Consensus       207 ~~aalvg~~~~~k~~vl~~l~~~l~pgg~lv~r~  240 (286)
                      +....... ..+..++++++.+.|+|||.+++..
T Consensus        98 ~~~~~l~~-~~~~~~~l~~~~~~L~~gG~l~~~~  130 (230)
T 3cc8_A           98 IFGDVLEH-LFDPWAVIEKVKPYIKQNGVILASI  130 (230)
T ss_dssp             EEESCGGG-SSCHHHHHHHTGGGEEEEEEEEEEE
T ss_pred             EECChhhh-cCCHHHHHHHHHHHcCCCCEEEEEe
Confidence            86544322 2355689999999999999999975

>3bt7_A TRNA (uracil-5-)-methyltransferase; methyluridine, methyltransferase, TRMA, RUMT; HET: 5MU; 2.43A {Escherichia coli}

Probab=99.12  E-value=1.4e-10  Score=109.37  Aligned_cols=99  Identities=12%  Similarity=0.117  Sum_probs=77.0

Q ss_pred             CCCEEEEeccCCChhhHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEccccchhhcC---------
Q 042119          130 QPKKVAFVGSGPMPLTSIIMAKHHLTSTHFDNFDIDEAANDVARSIVASDAEFEGRMKFLTRDIMEVKEQL---------  200 (286)
Q Consensus       130 ~~~~VL~IG~G~lp~tai~lA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~g~l~~~i~f~~~D~~~~~~~l---------  200 (286)
                      .+.+|||+|||++ .-++.+|+   ...+|+++|+|++|++.|+++++..| + ++++|+++|+.+....+         
T Consensus       213 ~~~~vLDl~cG~G-~~~l~la~---~~~~V~gvd~~~~ai~~a~~n~~~ng-~-~~v~~~~~d~~~~~~~~~~~~~~~~l  286 (369)
T 3bt7_A          213 SKGDLLELYCGNG-NFSLALAR---NFDRVLATEIAKPSVAAAQYNIAANH-I-DNVQIIRMAAEEFTQAMNGVREFNRL  286 (369)
T ss_dssp             CCSEEEEESCTTS-HHHHHHGG---GSSEEEEECCCHHHHHHHHHHHHHTT-C-CSEEEECCCSHHHHHHHSSCCCCTTG
T ss_pred             CCCEEEEccCCCC-HHHHHHHh---cCCEEEEEECCHHHHHHHHHHHHHcC-C-CceEEEECCHHHHHHHHhhccccccc
Confidence            3689999999974 55568887   46799999999999999999999999 4 68999999998764322         


Q ss_pred             -------CCcceeehhhhccCChhHHHHHHHHHHhhccCCcEEEEeec
Q 042119          201 -------GEYDCIFLAALVGMSKEEKLTILGHIRKYMKDGGILLVRSA  241 (286)
Q Consensus       201 -------~~fD~V~~aalvg~~~~~k~~vl~~l~~~l~pgg~lv~r~~  241 (286)
                             ..||+|+++-       ++..+...+.+.++|+|.+++-+-
T Consensus       287 ~~~~~~~~~fD~Vv~dP-------Pr~g~~~~~~~~l~~~g~ivyvsc  327 (369)
T 3bt7_A          287 QGIDLKSYQCETIFVDP-------PRSGLDSETEKMVQAYPRILYISC  327 (369)
T ss_dssp             GGSCGGGCCEEEEEECC-------CTTCCCHHHHHHHTTSSEEEEEES
T ss_pred             cccccccCCCCEEEECc-------CccccHHHHHHHHhCCCEEEEEEC
Confidence                   2699998762       222344556667778999888763

>3reo_A (ISO)eugenol O-methyltransferase; directed evolution, saturation mutagenesis, regioselectivity transferase; HET: SAH EUG; 1.90A {Clarkia breweri} PDB: 3tky_A* 1kyz_A* 1kyw_A*

Probab=99.12  E-value=1.4e-10  Score=109.10  Aligned_cols=99  Identities=20%  Similarity=0.270  Sum_probs=79.5

Q ss_pred             CCCCCEEEEeccCCChhhHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEccccchhhcCCCcceee
Q 042119          128 VVQPKKVAFVGSGPMPLTSIIMAKHHLTSTHFDNFDIDEAANDVARSIVASDAEFEGRMKFLTRDIMEVKEQLGEYDCIF  207 (286)
Q Consensus       128 ~~~~~~VL~IG~G~lp~tai~lA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~g~l~~~i~f~~~D~~~~~~~l~~fD~V~  207 (286)
                      ..+..+|||||||+ |..+..+++ .+|+.+++++|+ |++++.|++.        .+++|+.+|..+ +.+ .. |+|+
T Consensus       201 ~~~~~~vlDvG~G~-G~~~~~l~~-~~p~~~~~~~D~-~~~~~~a~~~--------~~v~~~~~d~~~-~~p-~~-D~v~  266 (368)
T 3reo_A          201 FEGLTTIVDVGGGT-GAVASMIVA-KYPSINAINFDL-PHVIQDAPAF--------SGVEHLGGDMFD-GVP-KG-DAIF  266 (368)
T ss_dssp             TTTCSEEEEETCTT-SHHHHHHHH-HCTTCEEEEEEC-HHHHTTCCCC--------TTEEEEECCTTT-CCC-CC-SEEE
T ss_pred             ccCCCEEEEeCCCc-CHHHHHHHH-hCCCCEEEEEeh-HHHHHhhhhc--------CCCEEEecCCCC-CCC-CC-CEEE
Confidence            46678999999996 666777777 479999999999 9998777642        579999999875 333 23 9998


Q ss_pred             hhhhc-cCChhHHHHHHHHHHhhccCCcEEEEee
Q 042119          208 LAALV-GMSKEEKLTILGHIRKYMKDGGILLVRS  240 (286)
Q Consensus       208 ~aalv-g~~~~~k~~vl~~l~~~l~pgg~lv~r~  240 (286)
                      +...+ .++.++..++|+++++.|+|||+|++.+
T Consensus       267 ~~~vlh~~~~~~~~~~l~~~~~~L~pgG~l~i~e  300 (368)
T 3reo_A          267 IKWICHDWSDEHCLKLLKNCYAALPDHGKVIVAE  300 (368)
T ss_dssp             EESCGGGBCHHHHHHHHHHHHHHSCTTCEEEEEE
T ss_pred             EechhhcCCHHHHHHHHHHHHHHcCCCCEEEEEE
Confidence            76544 5676777899999999999999998865

>3p9c_A Caffeic acid O-methyltransferase; S-adenosylmethionine dependent O-methyltransferase; HET: SAH; 1.80A {Lolium perenne} PDB: 3p9i_A* 3p9k_A*

Probab=99.11  E-value=1.9e-10  Score=108.10  Aligned_cols=99  Identities=17%  Similarity=0.195  Sum_probs=79.8

Q ss_pred             CCCCCEEEEeccCCChhhHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEccccchhhcCCCcceee
Q 042119          128 VVQPKKVAFVGSGPMPLTSIIMAKHHLTSTHFDNFDIDEAANDVARSIVASDAEFEGRMKFLTRDIMEVKEQLGEYDCIF  207 (286)
Q Consensus       128 ~~~~~~VL~IG~G~lp~tai~lA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~g~l~~~i~f~~~D~~~~~~~l~~fD~V~  207 (286)
                      ..+..+|||||||+ |..+..+++ .+|+.+++++|+ |++++.|++.        ++++|+.+|..+ +.+ .. |+|+
T Consensus       199 ~~~~~~vlDvG~G~-G~~~~~l~~-~~p~~~~~~~D~-~~~~~~a~~~--------~~v~~~~~D~~~-~~p-~~-D~v~  264 (364)
T 3p9c_A          199 FEGLGTLVDVGGGV-GATVAAIAA-HYPTIKGVNFDL-PHVISEAPQF--------PGVTHVGGDMFK-EVP-SG-DTIL  264 (364)
T ss_dssp             TTTCSEEEEETCTT-SHHHHHHHH-HCTTCEEEEEEC-HHHHTTCCCC--------TTEEEEECCTTT-CCC-CC-SEEE
T ss_pred             ccCCCEEEEeCCCC-CHHHHHHHH-HCCCCeEEEecC-HHHHHhhhhc--------CCeEEEeCCcCC-CCC-CC-CEEE
Confidence            46779999999997 566677776 479999999999 8888776641        589999999876 433 23 9998


Q ss_pred             hhhhc-cCChhHHHHHHHHHHhhccCCcEEEEee
Q 042119          208 LAALV-GMSKEEKLTILGHIRKYMKDGGILLVRS  240 (286)
Q Consensus       208 ~aalv-g~~~~~k~~vl~~l~~~l~pgg~lv~r~  240 (286)
                      +...+ .++.++..++|+++++.|+|||+|++.+
T Consensus       265 ~~~vlh~~~d~~~~~~L~~~~~~L~pgG~l~i~e  298 (364)
T 3p9c_A          265 MKWILHDWSDQHCATLLKNCYDALPAHGKVVLVQ  298 (364)
T ss_dssp             EESCGGGSCHHHHHHHHHHHHHHSCTTCEEEEEE
T ss_pred             ehHHhccCCHHHHHHHHHHHHHHcCCCCEEEEEE
Confidence            76544 5677778899999999999999998865

>3v97_A Ribosomal RNA large subunit methyltransferase L; YCBY, RNA methyltransferase, ribosome RNA, SAH, RLML; HET: SAH OSU; 2.20A {Escherichia coli} PDB: 3v8v_A*

Probab=99.10  E-value=2.9e-10  Score=115.90  Aligned_cols=108  Identities=10%  Similarity=0.202  Sum_probs=85.4

Q ss_pred             CCCCEEEEeccCCChhhHHHHHhhcCCCc-EEEEEeCChHHHHHHHHHHHhcCCCC-CCeEEEEccccchhhcC-CCcce
Q 042119          129 VQPKKVAFVGSGPMPLTSIIMAKHHLTST-HFDNFDIDEAANDVARSIVASDAEFE-GRMKFLTRDIMEVKEQL-GEYDC  205 (286)
Q Consensus       129 ~~~~~VL~IG~G~lp~tai~lA~~~~~g~-~V~~iDid~~ai~~Ar~~~~~~g~l~-~~i~f~~~D~~~~~~~l-~~fD~  205 (286)
                      .++++||++|||++++ ++.+|+   .|+ +|+++|+|+.++++|+++++..| +. ++++|+++|+.+..... +.||+
T Consensus       538 ~~g~~VLDlg~GtG~~-sl~aa~---~ga~~V~aVD~s~~al~~a~~N~~~ng-l~~~~v~~i~~D~~~~l~~~~~~fD~  612 (703)
T 3v97_A          538 SKGKDFLNLFSYTGSA-TVHAGL---GGARSTTTVDMSRTYLEWAERNLRLNG-LTGRAHRLIQADCLAWLREANEQFDL  612 (703)
T ss_dssp             CTTCEEEEESCTTCHH-HHHHHH---TTCSEEEEEESCHHHHHHHHHHHHHTT-CCSTTEEEEESCHHHHHHHCCCCEEE
T ss_pred             cCCCcEEEeeechhHH-HHHHHH---CCCCEEEEEeCCHHHHHHHHHHHHHcC-CCccceEEEecCHHHHHHhcCCCccE
Confidence            4689999999998665 466666   444 69999999999999999999999 65 68999999998854433 47999


Q ss_pred             eehhhhc-c---------CChhHHHHHHHHHHhhccCCcEEEEeec
Q 042119          206 IFLAALV-G---------MSKEEKLTILGHIRKYMKDGGILLVRSA  241 (286)
Q Consensus       206 V~~aalv-g---------~~~~~k~~vl~~l~~~l~pgg~lv~r~~  241 (286)
                      |+++.-- +         .......+++..+.+.|+|||+|++...
T Consensus       613 Ii~DPP~f~~~~~~~~~~~~~~~~~~ll~~a~~~LkpgG~L~~s~~  658 (703)
T 3v97_A          613 IFIDPPTFSNSKRMEDAFDVQRDHLALMKDLKRLLRAGGTIMFSNN  658 (703)
T ss_dssp             EEECCCSBC-------CCBHHHHHHHHHHHHHHHEEEEEEEEEEEC
T ss_pred             EEECCccccCCccchhHHHHHHHHHHHHHHHHHhcCCCcEEEEEEC
Confidence            9975310 0         0124667899999999999999998763

>1zq9_A Probable dimethyladenosine transferase; SGC, structural genomics, structural genomics consortium; HET: SAM; 1.90A {Homo sapiens} SCOP: c.66.1.24

Probab=99.10  E-value=1.8e-10  Score=104.92  Aligned_cols=78  Identities=13%  Similarity=0.200  Sum_probs=63.4

Q ss_pred             hcCCCCCCEEEEeccCCChhhHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEccccchhhcCCCcc
Q 042119          125 ENGVVQPKKVAFVGSGPMPLTSIIMAKHHLTSTHFDNFDIDEAANDVARSIVASDAEFEGRMKFLTRDIMEVKEQLGEYD  204 (286)
Q Consensus       125 ~~~~~~~~~VL~IG~G~lp~tai~lA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~g~l~~~i~f~~~D~~~~~~~l~~fD  204 (286)
                      ...+.++.+|||||||++. .+..+++   .+.+|+++|+|+.+++.+++.+...| +.++++++++|+.+.+  +..||
T Consensus        23 ~~~~~~~~~VLDiG~G~G~-lt~~L~~---~~~~v~~vD~~~~~~~~a~~~~~~~~-~~~~v~~~~~D~~~~~--~~~fD   95 (285)
T 1zq9_A           23 KAALRPTDVVLEVGPGTGN-MTVKLLE---KAKKVVACELDPRLVAELHKRVQGTP-VASKLQVLVGDVLKTD--LPFFD   95 (285)
T ss_dssp             HTCCCTTCEEEEECCTTST-THHHHHH---HSSEEEEEESCHHHHHHHHHHHTTST-TGGGEEEEESCTTTSC--CCCCS
T ss_pred             hcCCCCCCEEEEEcCcccH-HHHHHHh---hCCEEEEEECCHHHHHHHHHHHHhcC-CCCceEEEEcceeccc--chhhc
Confidence            4456788999999999755 4566776   36799999999999999999988777 5568999999997653  45799


Q ss_pred             eeehh
Q 042119          205 CIFLA  209 (286)
Q Consensus       205 ~V~~a  209 (286)
                      +|+..
T Consensus        96 ~vv~n  100 (285)
T 1zq9_A           96 TCVAN  100 (285)
T ss_dssp             EEEEE
T ss_pred             EEEEe
Confidence            98864

>3lcv_B Sisomicin-gentamicin resistance methylase SGM; antibiotic resistance, methyltransferase, transferase; HET: SAM; 2.00A {Micromonospora zionensis} PDB: 3lcu_A*

Probab=99.10  E-value=8.7e-11  Score=106.56  Aligned_cols=105  Identities=13%  Similarity=0.122  Sum_probs=83.3

Q ss_pred             CCCCEEEEeccCCChhhHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEccccchhhcCCCcceeeh
Q 042119          129 VQPKKVAFVGSGPMPLTSIIMAKHHLTSTHFDNFDIDEAANDVARSIVASDAEFEGRMKFLTRDIMEVKEQLGEYDCIFL  208 (286)
Q Consensus       129 ~~~~~VL~IG~G~lp~tai~lA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~g~l~~~i~f~~~D~~~~~~~l~~fD~V~~  208 (286)
                      .++.+|||||||.+|++..++..  .+.++++++|+|+.+++.+++++..+|.   +.++.++|....+ .-+.||+|+.
T Consensus       131 ~~p~~VLDLGCG~GpLAl~~~~~--~p~a~y~a~DId~~~le~a~~~l~~~g~---~~~~~v~D~~~~~-p~~~~DvaL~  204 (281)
T 3lcv_B          131 PRPNTLRDLACGLNPLAAPWMGL--PAETVYIASDIDARLVGFVDEALTRLNV---PHRTNVADLLEDR-LDEPADVTLL  204 (281)
T ss_dssp             CCCSEEEETTCTTGGGCCTTTTC--CTTCEEEEEESBHHHHHHHHHHHHHTTC---CEEEEECCTTTSC-CCSCCSEEEE
T ss_pred             CCCceeeeeccCccHHHHHHHhh--CCCCEEEEEeCCHHHHHHHHHHHHhcCC---CceEEEeeecccC-CCCCcchHHH
Confidence            45889999999988887665543  5899999999999999999999999993   4899999985433 2357999976


Q ss_pred             hhhc-cCChhHHHHHHHHHHhhccCCcEEEEee
Q 042119          209 AALV-GMSKEEKLTILGHIRKYMKDGGILLVRS  240 (286)
Q Consensus       209 aalv-g~~~~~k~~vl~~l~~~l~pgg~lv~r~  240 (286)
                      .-++ .+..+.|...+ .+...|+|||++|--.
T Consensus       205 lkti~~Le~q~kg~g~-~ll~aL~~~~vvVSfp  236 (281)
T 3lcv_B          205 LKTLPCLETQQRGSGW-EVIDIVNSPNIVVTFP  236 (281)
T ss_dssp             TTCHHHHHHHSTTHHH-HHHHHSSCSEEEEEEE
T ss_pred             HHHHHHhhhhhhHHHH-HHHHHhCCCCEEEecc
Confidence            5444 33455666666 8999999999998754

>2plw_A Ribosomal RNA methyltransferase, putative; malaria, SAM, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.70A {Plasmodium falciparum}

Probab=99.10  E-value=4.7e-10  Score=95.15  Aligned_cols=134  Identities=16%  Similarity=0.210  Sum_probs=83.5

Q ss_pred             CCCCCEEEEeccCCChhhHHHHHhhcCC--CcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEccccchh--------
Q 042119          128 VVQPKKVAFVGSGPMPLTSIIMAKHHLT--STHFDNFDIDEAANDVARSIVASDAEFEGRMKFLTRDIMEVK--------  197 (286)
Q Consensus       128 ~~~~~~VL~IG~G~lp~tai~lA~~~~~--g~~V~~iDid~~ai~~Ar~~~~~~g~l~~~i~f~~~D~~~~~--------  197 (286)
                      ..++.+|||||||++.+| ..++++ .+  +++|+|+|+++.+           .  ..+++|+++|+.+..        
T Consensus        20 ~~~~~~vLDlGcG~G~~~-~~l~~~-~~~~~~~v~gvD~s~~~-----------~--~~~v~~~~~d~~~~~~~~~~~~~   84 (201)
T 2plw_A           20 LKKNKIILDIGCYPGSWC-QVILER-TKNYKNKIIGIDKKIMD-----------P--IPNVYFIQGEIGKDNMNNIKNIN   84 (201)
T ss_dssp             CCTTEEEEEESCTTCHHH-HHHHHH-TTTSCEEEEEEESSCCC-----------C--CTTCEEEECCTTTTSSCCC----
T ss_pred             CCCCCEEEEeCCCCCHHH-HHHHHH-cCCCCceEEEEeCCccC-----------C--CCCceEEEccccchhhhhhcccc
Confidence            467889999999986655 556663 45  6999999999832           2  157999999997754        


Q ss_pred             -----------------hcCCCcceeehhhhccC---ChhHH-------HHHHHHHHhhccCCcEEEEeecCcc--eeee
Q 042119          198 -----------------EQLGEYDCIFLAALVGM---SKEEK-------LTILGHIRKYMKDGGILLVRSAKGA--RAFL  248 (286)
Q Consensus       198 -----------------~~l~~fD~V~~aalvg~---~~~~k-------~~vl~~l~~~l~pgg~lv~r~~~g~--r~~l  248 (286)
                                       .+...||+|+......+   +..+.       ..++..+.+.|+|||.+++....+-  ..+.
T Consensus        85 ~i~~~~~~~~~~~~~~~~~~~~fD~v~~~~~~~~~g~~~~d~~~~~~~~~~~l~~~~~~LkpgG~lv~~~~~~~~~~~l~  164 (201)
T 2plw_A           85 YIDNMNNNSVDYKLKEILQDKKIDIILSDAAVPCIGNKIDDHLNSCELTLSITHFMEQYINIGGTYIVKMYLGSQTNNLK  164 (201)
T ss_dssp             -------CHHHHHHHHHHTTCCEEEEEECCCCCCCSCHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEEECSTTHHHHH
T ss_pred             ccccccchhhHHHHHhhcCCCcccEEEeCCCcCCCCCcccCHHHHHHHHHHHHHHHHHHccCCCEEEEEEeCCCCHHHHH
Confidence                             23347999996532211   11121       2488999999999999998643220  0000


Q ss_pred             cccCCcccc-cCcEEEEEecCccccee---eeEEEeec
Q 042119          249 YPVVVEHDL-LDFEVLSAVHPNDDVIN---SVVLVRNS  282 (286)
Q Consensus       249 yp~v~~~~l-~gf~~~~~~~P~~~vin---svi~~r~~  282 (286)
                            ..+ ..|..+....|...-..   -++++++.
T Consensus       165 ------~~l~~~f~~v~~~~~~~~r~~s~e~y~v~~~~  196 (201)
T 2plw_A          165 ------TYLKGMFQLVHTTKPKASRNESREIYLVCKNF  196 (201)
T ss_dssp             ------HHHHTTEEEEEECCCC-----CCEEEEEEEEE
T ss_pred             ------HHHHHHHheEEEECCcccCCcCceEEEEEecC
Confidence                  011 24766666666543222   25666554

>1wxx_A TT1595, hypothetical protein TTHA1280; thermus thermophillus, methyltransferase, adoMet, structural genomics; 1.80A {Thermus thermophilus} SCOP: b.122.1.9 c.66.1.51 PDB: 1wxw_A 2cww_A*

Probab=99.09  E-value=2.3e-10  Score=108.19  Aligned_cols=106  Identities=15%  Similarity=0.100  Sum_probs=84.4

Q ss_pred             CCCEEEEeccCCChhhHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEccccchhhc----CCCcce
Q 042119          130 QPKKVAFVGSGPMPLTSIIMAKHHLTSTHFDNFDIDEAANDVARSIVASDAEFEGRMKFLTRDIMEVKEQ----LGEYDC  205 (286)
Q Consensus       130 ~~~~VL~IG~G~lp~tai~lA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~g~l~~~i~f~~~D~~~~~~~----l~~fD~  205 (286)
                      ++++|||+|||+ |.-++.+|+   .+.+|+++|+|+++++.|+++++..| +. +++|+++|+.+....    -..||+
T Consensus       209 ~~~~VLDlg~G~-G~~~~~la~---~~~~v~~vD~s~~~~~~a~~n~~~n~-~~-~~~~~~~d~~~~~~~~~~~~~~fD~  282 (382)
T 1wxx_A          209 RGERALDVFSYA-GGFALHLAL---GFREVVAVDSSAEALRRAEENARLNG-LG-NVRVLEANAFDLLRRLEKEGERFDL  282 (382)
T ss_dssp             CEEEEEEETCTT-THHHHHHHH---HEEEEEEEESCHHHHHHHHHHHHHTT-CT-TEEEEESCHHHHHHHHHHTTCCEEE
T ss_pred             CCCeEEEeeecc-CHHHHHHHH---hCCEEEEEECCHHHHHHHHHHHHHcC-CC-CceEEECCHHHHHHHHHhcCCCeeE
Confidence            678999999997 555677887   27899999999999999999999999 44 499999999886543    247999


Q ss_pred             eehhhhc-cCC-------hhHHHHHHHHHHhhccCCcEEEEeec
Q 042119          206 IFLAALV-GMS-------KEEKLTILGHIRKYMKDGGILLVRSA  241 (286)
Q Consensus       206 V~~aalv-g~~-------~~~k~~vl~~l~~~l~pgg~lv~r~~  241 (286)
                      |+++.-- +.+       .....+++..+.+.|+|||.+++.+.
T Consensus       283 Ii~dpP~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~  326 (382)
T 1wxx_A          283 VVLDPPAFAKGKKDVERAYRAYKEVNLRAIKLLKEGGILATASC  326 (382)
T ss_dssp             EEECCCCSCCSTTSHHHHHHHHHHHHHHHHHTEEEEEEEEEEEC
T ss_pred             EEECCCCCCCChhHHHHHHHHHHHHHHHHHHhcCCCCEEEEEEC
Confidence            9975311 111       13456799999999999999998763

>1fp1_D Isoliquiritigenin 2'-O-methyltransferase; protein-substrate, protein-product complex; HET: SAH HCC; 1.82A {Medicago sativa} SCOP: a.4.5.29 c.66.1.12 PDB: 1fpq_A*

Probab=99.08  E-value=2e-10  Score=107.78  Aligned_cols=99  Identities=16%  Similarity=0.233  Sum_probs=78.6

Q ss_pred             CCCCCEEEEeccCCChhhHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEccccchhhcCCCcceee
Q 042119          128 VVQPKKVAFVGSGPMPLTSIIMAKHHLTSTHFDNFDIDEAANDVARSIVASDAEFEGRMKFLTRDIMEVKEQLGEYDCIF  207 (286)
Q Consensus       128 ~~~~~~VL~IG~G~lp~tai~lA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~g~l~~~i~f~~~D~~~~~~~l~~fD~V~  207 (286)
                      ..++.+|||||||+ |..+..+++ ..++.+++++|+ |++++.|++.        .+++|+.+|..+ +  +..||+|+
T Consensus       207 ~~~~~~vLDvG~G~-G~~~~~l~~-~~~~~~~~~~D~-~~~~~~a~~~--------~~v~~~~~d~~~-~--~~~~D~v~  272 (372)
T 1fp1_D          207 FEGISTLVDVGGGS-GRNLELIIS-KYPLIKGINFDL-PQVIENAPPL--------SGIEHVGGDMFA-S--VPQGDAMI  272 (372)
T ss_dssp             TTTCSEEEEETCTT-SHHHHHHHH-HCTTCEEEEEEC-HHHHTTCCCC--------TTEEEEECCTTT-C--CCCEEEEE
T ss_pred             cCCCCEEEEeCCCC-cHHHHHHHH-HCCCCeEEEeCh-HHHHHhhhhc--------CCCEEEeCCccc-C--CCCCCEEE
Confidence            46779999999997 556677777 478999999999 9999887652        469999999866 3  33499999


Q ss_pred             hhhhc-cCChhHHHHHHHHHHhhccCCcEEEEee
Q 042119          208 LAALV-GMSKEEKLTILGHIRKYMKDGGILLVRS  240 (286)
Q Consensus       208 ~aalv-g~~~~~k~~vl~~l~~~l~pgg~lv~r~  240 (286)
                      ....+ .++.+...++++++++.|+|||.+++.+
T Consensus       273 ~~~~lh~~~d~~~~~~l~~~~~~L~pgG~l~i~e  306 (372)
T 1fp1_D          273 LKAVCHNWSDEKCIEFLSNCHKALSPNGKVIIVE  306 (372)
T ss_dssp             EESSGGGSCHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred             EecccccCCHHHHHHHHHHHHHhcCCCCEEEEEE
Confidence            76544 4555555699999999999999998874

>3q87_B N6 adenine specific DNA methylase; SAM-methyltransferase, methyltransferase, methylation, trans activator-transferase complex; HET: SAM; 2.00A {Encephalitozoon cuniculi}

Probab=99.08  E-value=1.9e-10  Score=96.42  Aligned_cols=94  Identities=11%  Similarity=0.081  Sum_probs=70.7

Q ss_pred             CCCCEEEEeccCCChhhHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEccccchhhcCCCcceeeh
Q 042119          129 VQPKKVAFVGSGPMPLTSIIMAKHHLTSTHFDNFDIDEAANDVARSIVASDAEFEGRMKFLTRDIMEVKEQLGEYDCIFL  208 (286)
Q Consensus       129 ~~~~~VL~IG~G~lp~tai~lA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~g~l~~~i~f~~~D~~~~~~~l~~fD~V~~  208 (286)
                      .++.+|||||||+ |..++.+++   .+ +|+|+|+|+++++.        .   .+++|+++|+.+. ...+.||+|+.
T Consensus        22 ~~~~~vLD~GcG~-G~~~~~l~~---~~-~v~gvD~s~~~~~~--------~---~~~~~~~~d~~~~-~~~~~fD~i~~   84 (170)
T 3q87_B           22 LEMKIVLDLGTST-GVITEQLRK---RN-TVVSTDLNIRALES--------H---RGGNLVRADLLCS-INQESVDVVVF   84 (170)
T ss_dssp             CCSCEEEEETCTT-CHHHHHHTT---TS-EEEEEESCHHHHHT--------C---SSSCEEECSTTTT-BCGGGCSEEEE
T ss_pred             CCCCeEEEeccCc-cHHHHHHHh---cC-cEEEEECCHHHHhc--------c---cCCeEEECChhhh-cccCCCCEEEE
Confidence            4677999999996 667778887   44 99999999999987        2   4789999999773 32367999986


Q ss_pred             hhhccC-Ch-------hHHHHHHHHHHhhccCCcEEEEee
Q 042119          209 AALVGM-SK-------EEKLTILGHIRKYMKDGGILLVRS  240 (286)
Q Consensus       209 aalvg~-~~-------~~k~~vl~~l~~~l~pgg~lv~r~  240 (286)
                      ...... +.       ++..+++.++.+.+ |||.+++..
T Consensus        85 n~~~~~~~~~~~~~~~~~~~~~~~~~~~~l-pgG~l~~~~  123 (170)
T 3q87_B           85 NPPYVPDTDDPIIGGGYLGREVIDRFVDAV-TVGMLYLLV  123 (170)
T ss_dssp             CCCCBTTCCCTTTBCCGGGCHHHHHHHHHC-CSSEEEEEE
T ss_pred             CCCCccCCccccccCCcchHHHHHHHHhhC-CCCEEEEEE
Confidence            532211 10       12356888999988 999998865

>1fp2_A Isoflavone O-methyltransferase; protein-product complex; HET: SAH HMO; 1.40A {Medicago sativa} SCOP: a.4.5.29 c.66.1.12 PDB: 1fpx_A* 2qyo_A*

Probab=99.07  E-value=2.4e-10  Score=106.32  Aligned_cols=99  Identities=14%  Similarity=0.248  Sum_probs=78.7

Q ss_pred             CCCCCEEEEeccCCChhhHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEccccchhhcCCCcceee
Q 042119          128 VVQPKKVAFVGSGPMPLTSIIMAKHHLTSTHFDNFDIDEAANDVARSIVASDAEFEGRMKFLTRDIMEVKEQLGEYDCIF  207 (286)
Q Consensus       128 ~~~~~~VL~IG~G~lp~tai~lA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~g~l~~~i~f~~~D~~~~~~~l~~fD~V~  207 (286)
                      ..++.+|||||||+ |..+..+++ .+|+.+++++|+ |++++.|++.        .+++|+.+|..+ +  +.+||+|+
T Consensus       186 ~~~~~~vlDvG~G~-G~~~~~l~~-~~p~~~~~~~D~-~~~~~~a~~~--------~~v~~~~~d~~~-~--~p~~D~v~  251 (352)
T 1fp2_A          186 FDGLESIVDVGGGT-GTTAKIICE-TFPKLKCIVFDR-PQVVENLSGS--------NNLTYVGGDMFT-S--IPNADAVL  251 (352)
T ss_dssp             HTTCSEEEEETCTT-SHHHHHHHH-HCTTCEEEEEEC-HHHHTTCCCB--------TTEEEEECCTTT-C--CCCCSEEE
T ss_pred             cccCceEEEeCCCc-cHHHHHHHH-HCCCCeEEEeeC-HHHHhhcccC--------CCcEEEeccccC-C--CCCccEEE
Confidence            45678999999997 566677777 478999999999 9999888751        359999999865 2  33599998


Q ss_pred             hhhhc-cCChhHHHHHHHHHHhhccC---CcEEEEee
Q 042119          208 LAALV-GMSKEEKLTILGHIRKYMKD---GGILLVRS  240 (286)
Q Consensus       208 ~aalv-g~~~~~k~~vl~~l~~~l~p---gg~lv~r~  240 (286)
                      ....+ .++.++..++++++++.|+|   ||++++.+
T Consensus       252 ~~~~lh~~~d~~~~~~l~~~~~~L~p~~~gG~l~i~e  288 (352)
T 1fp2_A          252 LKYILHNWTDKDCLRILKKCKEAVTNDGKRGKVTIID  288 (352)
T ss_dssp             EESCGGGSCHHHHHHHHHHHHHHHSGGGCCCEEEEEE
T ss_pred             eehhhccCCHHHHHHHHHHHHHhCCCCCCCcEEEEEE
Confidence            76544 45555666999999999999   99998865

>2zfu_A Nucleomethylin, cerebral protein 1; nucleolar protein, SAM-binding protein, protein structure, N phosphoprotein, nuclear protein; HET: SAH; 2.00A {Homo sapiens}

Probab=99.06  E-value=3.2e-10  Score=97.41  Aligned_cols=120  Identities=16%  Similarity=0.164  Sum_probs=83.5

Q ss_pred             CCCCEEEEeccCCChhhHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEccccchhhcCCCcceeeh
Q 042119          129 VQPKKVAFVGSGPMPLTSIIMAKHHLTSTHFDNFDIDEAANDVARSIVASDAEFEGRMKFLTRDIMEVKEQLGEYDCIFL  208 (286)
Q Consensus       129 ~~~~~VL~IG~G~lp~tai~lA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~g~l~~~i~f~~~D~~~~~~~l~~fD~V~~  208 (286)
                      .++.+|||||||++. .+..+      +.+|+++|+|+.                 +++++++|+.+++...+.||+|+.
T Consensus        66 ~~~~~vLDiG~G~G~-~~~~l------~~~v~~~D~s~~-----------------~~~~~~~d~~~~~~~~~~fD~v~~  121 (215)
T 2zfu_A           66 PASLVVADFGCGDCR-LASSI------RNPVHCFDLASL-----------------DPRVTVCDMAQVPLEDESVDVAVF  121 (215)
T ss_dssp             CTTSCEEEETCTTCH-HHHHC------CSCEEEEESSCS-----------------STTEEESCTTSCSCCTTCEEEEEE
T ss_pred             CCCCeEEEECCcCCH-HHHHh------hccEEEEeCCCC-----------------CceEEEeccccCCCCCCCEeEEEE
Confidence            567899999999754 33333      378999999988                 357889999886655567999987


Q ss_pred             hhhccCChhHHHHHHHHHHhhccCCcEEEEeecCcceeeecccCCcccc------cCcEEEEEecCcccceeeeEEEeec
Q 042119          209 AALVGMSKEEKLTILGHIRKYMKDGGILLVRSAKGARAFLYPVVVEHDL------LDFEVLSAVHPNDDVINSVVLVRNS  282 (286)
Q Consensus       209 aalvg~~~~~k~~vl~~l~~~l~pgg~lv~r~~~g~r~~lyp~v~~~~l------~gf~~~~~~~P~~~vinsvi~~r~~  282 (286)
                      ...+..  ++...+++++.+.|+|||.+++.+...  .  ++  .+.++      .||++.......+  ...++++||.
T Consensus       122 ~~~l~~--~~~~~~l~~~~~~L~~gG~l~i~~~~~--~--~~--~~~~~~~~l~~~Gf~~~~~~~~~~--~~~~~~~~k~  191 (215)
T 2zfu_A          122 CLSLMG--TNIRDFLEEANRVLKPGGLLKVAEVSS--R--FE--DVRTFLRAVTKLGFKIVSKDLTNS--HFFLFDFQKT  191 (215)
T ss_dssp             ESCCCS--SCHHHHHHHHHHHEEEEEEEEEEECGG--G--CS--CHHHHHHHHHHTTEEEEEEECCST--TCEEEEEEEC
T ss_pred             ehhccc--cCHHHHHHHHHHhCCCCeEEEEEEcCC--C--CC--CHHHHHHHHHHCCCEEEEEecCCC--eEEEEEEEec
Confidence            554432  567789999999999999999976332  0  11  22211      5898876543322  2256777774

>2jjq_A Uncharacterized RNA methyltransferase pyrab10780; metal-binding, tRNA methyltransferase, S-adenosyl-L-methionine, iron, 4Fe-4S, iron-sulfur; HET: SAH; 1.8A {Pyrococcus abyssi} PDB: 2vs1_A*

Probab=99.04  E-value=1.3e-09  Score=104.90  Aligned_cols=99  Identities=23%  Similarity=0.290  Sum_probs=78.1

Q ss_pred             CCCCCEEEEeccCCChhhHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEccccchhhcCCCcceee
Q 042119          128 VVQPKKVAFVGSGPMPLTSIIMAKHHLTSTHFDNFDIDEAANDVARSIVASDAEFEGRMKFLTRDIMEVKEQLGEYDCIF  207 (286)
Q Consensus       128 ~~~~~~VL~IG~G~lp~tai~lA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~g~l~~~i~f~~~D~~~~~~~l~~fD~V~  207 (286)
                      ..++.+|||+|||+ |.-++.+|+   .+.+|+|+|+|++|++.|+++++..| + + ++|+++|+.+....  .||+|+
T Consensus       288 ~~~~~~VLDlgcG~-G~~sl~la~---~~~~V~gvD~s~~ai~~A~~n~~~ng-l-~-v~~~~~d~~~~~~~--~fD~Vv  358 (425)
T 2jjq_A          288 LVEGEKILDMYSGV-GTFGIYLAK---RGFNVKGFDSNEFAIEMARRNVEINN-V-D-AEFEVASDREVSVK--GFDTVI  358 (425)
T ss_dssp             HCCSSEEEEETCTT-THHHHHHHH---TTCEEEEEESCHHHHHHHHHHHHHHT-C-C-EEEEECCTTTCCCT--TCSEEE
T ss_pred             cCCCCEEEEeeccc-hHHHHHHHH---cCCEEEEEECCHHHHHHHHHHHHHcC-C-c-EEEEECChHHcCcc--CCCEEE
Confidence            46788999999996 555677888   47899999999999999999999888 4 3 99999999876543  799999


Q ss_pred             hhhhc-cCChhHHHHHHHHHHhhccCCcEEEEee
Q 042119          208 LAALV-GMSKEEKLTILGHIRKYMKDGGILLVRS  240 (286)
Q Consensus       208 ~aalv-g~~~~~k~~vl~~l~~~l~pgg~lv~r~  240 (286)
                      ++--- |+    ...+++.+. .++|||++.+..
T Consensus       359 ~dPPr~g~----~~~~~~~l~-~l~p~givyvsc  387 (425)
T 2jjq_A          359 VDPPRAGL----HPRLVKRLN-REKPGVIVYVSC  387 (425)
T ss_dssp             ECCCTTCS----CHHHHHHHH-HHCCSEEEEEES
T ss_pred             EcCCccch----HHHHHHHHH-hcCCCcEEEEEC
Confidence            76321 21    124666665 489999988863

>3opn_A Putative hemolysin; structural genomics, PSI-2, protein structure initiative, NE SGX research center for structural genomics, nysgxrc; 2.05A {Lactococcus lactis subsp}

Probab=99.04  E-value=3.7e-11  Score=106.59  Aligned_cols=103  Identities=14%  Similarity=0.093  Sum_probs=65.3

Q ss_pred             HHhcCC-CCCCEEEEeccCCChhhHHHHHhhcCCC-cEEEEEeCChHHHHHHHHHHHhcCCCC--CCeEEEE-ccccchh
Q 042119          123 LSENGV-VQPKKVAFVGSGPMPLTSIIMAKHHLTS-THFDNFDIDEAANDVARSIVASDAEFE--GRMKFLT-RDIMEVK  197 (286)
Q Consensus       123 l~~~~~-~~~~~VL~IG~G~lp~tai~lA~~~~~g-~~V~~iDid~~ai~~Ar~~~~~~g~l~--~~i~f~~-~D~~~~~  197 (286)
                      +..+.+ ..+++|||||||++. .+..+++   .| .+|+|+|+|++|++.|++...+.+ ..  .++++.. +|.....
T Consensus        29 L~~~~~~~~g~~VLDiGcGtG~-~t~~la~---~g~~~V~gvDis~~ml~~a~~~~~~~~-~~~~~~~~~~~~~~~~~~~  103 (232)
T 3opn_A           29 LKEFHLEINGKTCLDIGSSTGG-FTDVMLQ---NGAKLVYALDVGTNQLAWKIRSDERVV-VMEQFNFRNAVLADFEQGR  103 (232)
T ss_dssp             HHHTTCCCTTCEEEEETCTTSH-HHHHHHH---TTCSEEEEECSSCCCCCHHHHTCTTEE-EECSCCGGGCCGGGCCSCC
T ss_pred             HHHcCCCCCCCEEEEEccCCCH-HHHHHHh---cCCCEEEEEcCCHHHHHHHHHhCcccc-ccccceEEEeCHhHcCcCC
Confidence            334444 456799999999754 5567777   35 499999999999999887533221 11  1233333 2211101


Q ss_pred             hcCCCcceeehhhhccCChhHHHHHHHHHHhhccCCcEEEEe
Q 042119          198 EQLGEYDCIFLAALVGMSKEEKLTILGHIRKYMKDGGILLVR  239 (286)
Q Consensus       198 ~~l~~fD~V~~aalvg~~~~~k~~vl~~l~~~l~pgg~lv~r  239 (286)
                      .+...||++|.. +        ..++.++.+.|||||.+++-
T Consensus       104 ~d~~~~D~v~~~-l--------~~~l~~i~rvLkpgG~lv~~  136 (232)
T 3opn_A          104 PSFTSIDVSFIS-L--------DLILPPLYEILEKNGEVAAL  136 (232)
T ss_dssp             CSEEEECCSSSC-G--------GGTHHHHHHHSCTTCEEEEE
T ss_pred             CCEEEEEEEhhh-H--------HHHHHHHHHhccCCCEEEEE
Confidence            122245665533 1        46999999999999998875

>3o4f_A Spermidine synthase; aminopropyltransferase, polyamine synthase, rossmann fold, P biosynthesis, spermidine biosynthesis, transferase; 2.90A {Escherichia coli}

Probab=99.03  E-value=6.8e-10  Score=102.17  Aligned_cols=111  Identities=16%  Similarity=0.296  Sum_probs=85.5

Q ss_pred             CCCCEEEEeccCCChhhHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhc--CCC-CCCeEEEEccccchhhcC-CCcc
Q 042119          129 VQPKKVAFVGSGPMPLTSIIMAKHHLTSTHFDNFDIDEAANDVARSIVASD--AEF-EGRMKFLTRDIMEVKEQL-GEYD  204 (286)
Q Consensus       129 ~~~~~VL~IG~G~lp~tai~lA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~--g~l-~~~i~f~~~D~~~~~~~l-~~fD  204 (286)
                      ..|++||.||.|. |.++-.+.+ +.+..+|+.+||||+.++.|++.+...  |.+ ..|++++.+|+.+....- +.||
T Consensus        82 p~pk~VLIiGgGd-G~~~revlk-~~~v~~v~~VEID~~Vv~~a~~~lp~~~~~~~~dpRv~v~~~Dg~~~l~~~~~~yD  159 (294)
T 3o4f_A           82 GHAKHVLIIGGGD-GAMLREVTR-HKNVESITMVEIDAGVVSFCRQYLPNHNAGSYDDPRFKLVIDDGVNFVNQTSQTFD  159 (294)
T ss_dssp             SCCCEEEEESCTT-SHHHHHHHT-CTTCCEEEEEESCHHHHHHHHHHCHHHHTTGGGCTTEEEEESCTTTTTSCSSCCEE
T ss_pred             CCCCeEEEECCCc-hHHHHHHHH-cCCcceEEEEcCCHHHHHHHHhcCccccccccCCCcEEEEechHHHHHhhccccCC
Confidence            6789999999995 667777777 466789999999999999999987432  211 379999999998876544 3699


Q ss_pred             eeehhhhccCChhH---HHHHHHHHHhhccCCcEEEEeec
Q 042119          205 CIFLAALVGMSKEE---KLTILGHIRKYMKDGGILLVRSA  241 (286)
Q Consensus       205 ~V~~aalvg~~~~~---k~~vl~~l~~~l~pgg~lv~r~~  241 (286)
                      +|+++..=......   -.++++.+.+.|+|||++++..+
T Consensus       160 vIi~D~~dp~~~~~~L~t~eFy~~~~~~L~p~Gv~v~q~~  199 (294)
T 3o4f_A          160 VIISDCTDPIGPGESLFTSAFYEGCKRCLNPGGIFVAQNG  199 (294)
T ss_dssp             EEEESCCCCCCTTCCSSCCHHHHHHHHTEEEEEEEEEEEE
T ss_pred             EEEEeCCCcCCCchhhcCHHHHHHHHHHhCCCCEEEEecC
Confidence            99988652111111   24689999999999999999763

>2dul_A N(2),N(2)-dimethylguanosine tRNA methyltransferas; tRNA modification enzyme, guanine 26, N(2),N(2)-dimethyltran structural genomics; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.58 PDB: 2ejt_A* 2eju_A* 2ytz_A*

Probab=99.03  E-value=4.4e-10  Score=106.73  Aligned_cols=102  Identities=21%  Similarity=0.160  Sum_probs=82.1

Q ss_pred             CCCEEEEeccCCChhhHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhc---------------CCCCCCeEEEEcccc
Q 042119          130 QPKKVAFVGSGPMPLTSIIMAKHHLTSTHFDNFDIDEAANDVARSIVASD---------------AEFEGRMKFLTRDIM  194 (286)
Q Consensus       130 ~~~~VL~IG~G~lp~tai~lA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~---------------g~l~~~i~f~~~D~~  194 (286)
                      ++.+|||+|||++ .-++.+|++ .++.+|+++|+|+++++.++++++..               | +.+ ++++++|+.
T Consensus        47 ~~~~VLDl~aGtG-~~~l~~a~~-~~~~~V~avDi~~~av~~a~~N~~~n~~~~~~~~~~~~~~~g-l~~-i~v~~~Da~  122 (378)
T 2dul_A           47 NPKIVLDALSATG-IRGIRFALE-TPAEEVWLNDISEDAYELMKRNVMLNFDGELRESKGRAILKG-EKT-IVINHDDAN  122 (378)
T ss_dssp             CCSEEEESSCTTS-HHHHHHHHH-SSCSEEEEEESCHHHHHHHHHHHHHHCCSCCEECSSEEEEES-SSE-EEEEESCHH
T ss_pred             CCCEEEECCCchh-HHHHHHHHh-CCCCeEEEEECCHHHHHHHHHHHHHhcccccccccccccccC-CCc-eEEEcCcHH
Confidence            6889999999975 555677763 46678999999999999999999998               7 543 999999998


Q ss_pred             chhhcC-CCcceeehhhhccCChhHHHHHHHHHHhhccCCcEEEEee
Q 042119          195 EVKEQL-GEYDCIFLAALVGMSKEEKLTILGHIRKYMKDGGILLVRS  240 (286)
Q Consensus       195 ~~~~~l-~~fD~V~~aalvg~~~~~k~~vl~~l~~~l~pgg~lv~r~  240 (286)
                      ++.... ..||+|+++.. +    ...++++...+.++|||++.+..
T Consensus       123 ~~~~~~~~~fD~I~lDP~-~----~~~~~l~~a~~~lk~gG~l~vt~  164 (378)
T 2dul_A          123 RLMAERHRYFHFIDLDPF-G----SPMEFLDTALRSAKRRGILGVTA  164 (378)
T ss_dssp             HHHHHSTTCEEEEEECCS-S----CCHHHHHHHHHHEEEEEEEEEEE
T ss_pred             HHHHhccCCCCEEEeCCC-C----CHHHHHHHHHHhcCCCCEEEEEe
Confidence            876544 36999997643 2    22478999999999999887753

>2b9e_A NOL1/NOP2/SUN domain family, member 5 isoform 2; methytransferase, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.65A {Homo sapiens} SCOP: c.66.1.38

Probab=99.02  E-value=2.4e-09  Score=99.07  Aligned_cols=110  Identities=19%  Similarity=0.153  Sum_probs=81.4

Q ss_pred             CCCCCCEEEEeccCCChhhHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEccccchhhcC---CCc
Q 042119          127 GVVQPKKVAFVGSGPMPLTSIIMAKHHLTSTHFDNFDIDEAANDVARSIVASDAEFEGRMKFLTRDIMEVKEQL---GEY  203 (286)
Q Consensus       127 ~~~~~~~VL~IG~G~lp~tai~lA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~g~l~~~i~f~~~D~~~~~~~l---~~f  203 (286)
                      .+.++.+|||+||||++.|.. +|+....+++|+++|+|+.+++.+++++++.| + .+++++++|+.++....   ..|
T Consensus        99 ~~~~g~~VLDlcaG~G~kt~~-la~~~~~~g~V~a~D~~~~~l~~~~~n~~r~g-~-~~v~~~~~D~~~~~~~~~~~~~f  175 (309)
T 2b9e_A           99 DPPPGSHVIDACAAPGNKTSH-LAALLKNQGKIFAFDLDAKRLASMATLLARAG-V-SCCELAEEDFLAVSPSDPRYHEV  175 (309)
T ss_dssp             CCCTTCEEEESSCTTCHHHHH-HHHHHTTCSEEEEEESCHHHHHHHHHHHHHTT-C-CSEEEEECCGGGSCTTCGGGTTE
T ss_pred             CCCCCCEEEEeCCChhHHHHH-HHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcC-C-CeEEEEeCChHhcCccccccCCC
Confidence            467889999999999777654 55523356899999999999999999999999 4 67999999998765432   469


Q ss_pred             ceeehhhh---ccC---ChhH-----------------HHHHHHHHHhhccCCcEEEEee
Q 042119          204 DCIFLAAL---VGM---SKEE-----------------KLTILGHIRKYMKDGGILLVRS  240 (286)
Q Consensus       204 D~V~~aal---vg~---~~~~-----------------k~~vl~~l~~~l~pgg~lv~r~  240 (286)
                      |.|++++-   .|+   .++.                 ..++|++..+.++ ||+|++.+
T Consensus       176 D~Vl~D~PcSg~G~~~r~pd~~~~~~~~~~~~~~l~~~Q~~iL~~a~~~l~-gG~lvYsT  234 (309)
T 2b9e_A          176 HYILLDPSCSGSGMPSRQLEEPGAGTPSPVRLHALAGFQQRALCHALTFPS-LQRLVYST  234 (309)
T ss_dssp             EEEEECCCCCC------------------CCHHHHHHHHHHHHHHHTTCTT-CCEEEEEE
T ss_pred             CEEEEcCCcCCCCCCccCCChhhhccCCHHHHHHHHHHHHHHHHHHHhccC-CCEEEEEC
Confidence            99997531   121   0010                 1257888888776 99999864

>2h1r_A Dimethyladenosine transferase, putative; SGC toronto dimethyladenosine transferase, structural genomics, structural genomics consortium; 1.89A {Plasmodium falciparum}

Probab=99.02  E-value=1.2e-09  Score=100.21  Aligned_cols=76  Identities=11%  Similarity=0.177  Sum_probs=59.2

Q ss_pred             cCCCCCCEEEEeccCCChhhHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEccccchhhcCCCcce
Q 042119          126 NGVVQPKKVAFVGSGPMPLTSIIMAKHHLTSTHFDNFDIDEAANDVARSIVASDAEFEGRMKFLTRDIMEVKEQLGEYDC  205 (286)
Q Consensus       126 ~~~~~~~~VL~IG~G~lp~tai~lA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~g~l~~~i~f~~~D~~~~~~~l~~fD~  205 (286)
                      ..+.++.+|||||||++. .+..+++   .+.+|+|+|+|+.+++.|++.+...| + ++++++++|+.+.+  +..||+
T Consensus        38 ~~~~~~~~VLDiG~G~G~-lt~~La~---~~~~v~~vDi~~~~~~~a~~~~~~~~-~-~~v~~~~~D~~~~~--~~~~D~  109 (299)
T 2h1r_A           38 AKIKSSDIVLEIGCGTGN-LTVKLLP---LAKKVITIDIDSRMISEVKKRCLYEG-Y-NNLEVYEGDAIKTV--FPKFDV  109 (299)
T ss_dssp             HCCCTTCEEEEECCTTST-THHHHTT---TSSEEEEECSCHHHHHHHHHHHHHTT-C-CCEEC----CCSSC--CCCCSE
T ss_pred             cCCCCcCEEEEEcCcCcH-HHHHHHh---cCCEEEEEECCHHHHHHHHHHHHHcC-C-CceEEEECchhhCC--cccCCE
Confidence            356788999999999754 5567777   47899999999999999999998877 3 68999999997754  358999


Q ss_pred             eehh
Q 042119          206 IFLA  209 (286)
Q Consensus       206 V~~a  209 (286)
                      |+..
T Consensus       110 Vv~n  113 (299)
T 2h1r_A          110 CTAN  113 (299)
T ss_dssp             EEEE
T ss_pred             EEEc
Confidence            9864

>2ld4_A Anamorsin; methyltransferase-like fold, alpha/beta fold, iron-sulfur PR biogenesis, apoptosis; NMR {Homo sapiens} PDB: 2yui_A

Probab=99.01  E-value=1.7e-10  Score=96.40  Aligned_cols=92  Identities=16%  Similarity=0.277  Sum_probs=72.3

Q ss_pred             hcCCCCCCEEEEeccCCChhhHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEccccchhh---cCC
Q 042119          125 ENGVVQPKKVAFVGSGPMPLTSIIMAKHHLTSTHFDNFDIDEAANDVARSIVASDAEFEGRMKFLTRDIMEVKE---QLG  201 (286)
Q Consensus       125 ~~~~~~~~~VL~IG~G~lp~tai~lA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~g~l~~~i~f~~~D~~~~~~---~l~  201 (286)
                      ..+.+++.+||+||||.                  +++|+|++|++.|++..   +   .+++|+++|+.+++.   ..+
T Consensus         7 ~~g~~~g~~vL~~~~g~------------------v~vD~s~~ml~~a~~~~---~---~~~~~~~~d~~~~~~~~~~~~   62 (176)
T 2ld4_A            7 DFGISAGQFVAVVWDKS------------------SPVEALKGLVDKLQALT---G---NEGRVSVENIKQLLQSAHKES   62 (176)
T ss_dssp             TTTCCTTSEEEEEECTT------------------SCHHHHHHHHHHHHHHT---T---TTSEEEEEEGGGGGGGCCCSS
T ss_pred             ccCCCCCCEEEEecCCc------------------eeeeCCHHHHHHHHHhc---c---cCcEEEEechhcCccccCCCC
Confidence            44678999999999994                  12799999999999873   2   358999999988776   456


Q ss_pred             CcceeehhhhccCChhHHHHHHHHHHhhccCCcEEEEee
Q 042119          202 EYDCIFLAALVGMSKEEKLTILGHIRKYMKDGGILLVRS  240 (286)
Q Consensus       202 ~fD~V~~aalvg~~~~~k~~vl~~l~~~l~pgg~lv~r~  240 (286)
                      .||+|+.....++-.++..++++++++.|||||.+++..
T Consensus        63 ~fD~V~~~~~l~~~~~~~~~~l~~~~r~LkpgG~l~~~~  101 (176)
T 2ld4_A           63 SFDIILSGLVPGSTTLHSAEILAEIARILRPGGCLFLKE  101 (176)
T ss_dssp             CEEEEEECCSTTCCCCCCHHHHHHHHHHEEEEEEEEEEE
T ss_pred             CEeEEEECChhhhcccCHHHHHHHHHHHCCCCEEEEEEc
Confidence            799999644333221456789999999999999999964

>1ne2_A Hypothetical protein TA1320; structural genomics, conserved hypothetical protein, PSI, protein structure initiative; 1.75A {Thermoplasma acidophilum} SCOP: c.66.1.32

Probab=99.01  E-value=1.9e-09  Score=91.75  Aligned_cols=99  Identities=20%  Similarity=0.283  Sum_probs=72.1

Q ss_pred             CCCCCCEEEEeccCCChhhHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEccccchhhcCCCccee
Q 042119          127 GVVQPKKVAFVGSGPMPLTSIIMAKHHLTSTHFDNFDIDEAANDVARSIVASDAEFEGRMKFLTRDIMEVKEQLGEYDCI  206 (286)
Q Consensus       127 ~~~~~~~VL~IG~G~lp~tai~lA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~g~l~~~i~f~~~D~~~~~~~l~~fD~V  206 (286)
                      ...++.+|||+|||+ |..++.+++  ....+|+|+|+|+++++.|++.+.       +++|+++|+.+++   +.||+|
T Consensus        48 ~~~~~~~vlD~gcG~-G~~~~~l~~--~~~~~v~~vD~~~~~~~~a~~~~~-------~~~~~~~d~~~~~---~~~D~v  114 (200)
T 1ne2_A           48 GNIGGRSVIDAGTGN-GILACGSYL--LGAESVTAFDIDPDAIETAKRNCG-------GVNFMVADVSEIS---GKYDTW  114 (200)
T ss_dssp             TSSBTSEEEEETCTT-CHHHHHHHH--TTBSEEEEEESCHHHHHHHHHHCT-------TSEEEECCGGGCC---CCEEEE
T ss_pred             CCCCCCEEEEEeCCc-cHHHHHHHH--cCCCEEEEEECCHHHHHHHHHhcC-------CCEEEECcHHHCC---CCeeEE
Confidence            456789999999996 556677887  234479999999999999999743       6899999998754   579999


Q ss_pred             ehhhhccC-ChhHHHHHHHHHHhhccCCcEEEEee
Q 042119          207 FLAALVGM-SKEEKLTILGHIRKYMKDGGILLVRS  240 (286)
Q Consensus       207 ~~aalvg~-~~~~k~~vl~~l~~~l~pgg~lv~r~  240 (286)
                      +.....+. ......++++.+.+.+  |+++++.+
T Consensus       115 ~~~~p~~~~~~~~~~~~l~~~~~~~--g~~~~~~~  147 (200)
T 1ne2_A          115 IMNPPFGSVVKHSDRAFIDKAFETS--MWIYSIGN  147 (200)
T ss_dssp             EECCCC-------CHHHHHHHHHHE--EEEEEEEE
T ss_pred             EECCCchhccCchhHHHHHHHHHhc--CcEEEEEc
Confidence            97643211 1122346899999988  66555544

>3axs_A Probable N(2),N(2)-dimethylguanosine tRNA methylt TRM1; structural genomics, riken structural genomics/proteomics in RSGI; HET: SFG; 2.16A {Aquifex aeolicus} PDB: 3axt_A*

Probab=99.00  E-value=5.9e-10  Score=106.47  Aligned_cols=104  Identities=17%  Similarity=0.134  Sum_probs=83.7

Q ss_pred             CCCCEEEEeccCCChhhHHHHHhhcCCC-cEEEEEeCChHHHHHHHHHHHhcCCCCCC-eEEEEccccchhh-cC-CCcc
Q 042119          129 VQPKKVAFVGSGPMPLTSIIMAKHHLTS-THFDNFDIDEAANDVARSIVASDAEFEGR-MKFLTRDIMEVKE-QL-GEYD  204 (286)
Q Consensus       129 ~~~~~VL~IG~G~lp~tai~lA~~~~~g-~~V~~iDid~~ai~~Ar~~~~~~g~l~~~-i~f~~~D~~~~~~-~l-~~fD  204 (286)
                      .++.+|||++||+++++ +.+|++ ..| .+|+++|+|+++++.++++++..| ++++ ++++++|+.++.. .+ +.||
T Consensus        51 ~~g~~VLDlfaGtG~~s-l~aa~~-~~ga~~V~avDi~~~av~~~~~N~~~Ng-l~~~~v~v~~~Da~~~l~~~~~~~fD  127 (392)
T 3axs_A           51 GRPVKVADPLSASGIRA-IRFLLE-TSCVEKAYANDISSKAIEIMKENFKLNN-IPEDRYEIHGMEANFFLRKEWGFGFD  127 (392)
T ss_dssp             CSCEEEEESSCTTSHHH-HHHHHH-CSCEEEEEEECSCHHHHHHHHHHHHHTT-CCGGGEEEECSCHHHHHHSCCSSCEE
T ss_pred             CCCCEEEECCCcccHHH-HHHHHh-CCCCCEEEEEECCHHHHHHHHHHHHHhC-CCCceEEEEeCCHHHHHHHhhCCCCc
Confidence            35789999999986665 555552 345 689999999999999999999999 6766 9999999988765 54 3699


Q ss_pred             eeehhhhccCChhHHHHHHHHHHhhccCCcEEEEee
Q 042119          205 CIFLAALVGMSKEEKLTILGHIRKYMKDGGILLVRS  240 (286)
Q Consensus       205 ~V~~aalvg~~~~~k~~vl~~l~~~l~pgg~lv~r~  240 (286)
                      +|+++.. +.    ..++++...+.++|||+|.+..
T Consensus       128 ~V~lDP~-g~----~~~~l~~a~~~Lk~gGll~~t~  158 (392)
T 3axs_A          128 YVDLDPF-GT----PVPFIESVALSMKRGGILSLTA  158 (392)
T ss_dssp             EEEECCS-SC----CHHHHHHHHHHEEEEEEEEEEE
T ss_pred             EEEECCC-cC----HHHHHHHHHHHhCCCCEEEEEe
Confidence            9998862 21    1358999999999999887754

>3dou_A Ribosomal RNA large subunit methyltransferase J; cell division, structural genomics, protein structure initiative, PSI; HET: SAM; 1.45A {Thermoplasma volcanium} SCOP: c.66.1.0

Probab=98.99  E-value=1.6e-09  Score=93.01  Aligned_cols=133  Identities=17%  Similarity=0.282  Sum_probs=85.4

Q ss_pred             CCCCCEEEEeccCCChhhHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEccccchhhc------C-
Q 042119          128 VVQPKKVAFVGSGPMPLTSIIMAKHHLTSTHFDNFDIDEAANDVARSIVASDAEFEGRMKFLTRDIMEVKEQ------L-  200 (286)
Q Consensus       128 ~~~~~~VL~IG~G~lp~tai~lA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~g~l~~~i~f~~~D~~~~~~~------l-  200 (286)
                      ..++.+|||+||||++.| ..+|+   .+++|+|+|+++.+           .  ..+++|+++|+.+....      + 
T Consensus        23 ~~~g~~VLDlG~G~G~~s-~~la~---~~~~V~gvD~~~~~-----------~--~~~v~~~~~D~~~~~~~~~~~~~~~   85 (191)
T 3dou_A           23 VRKGDAVIEIGSSPGGWT-QVLNS---LARKIISIDLQEME-----------E--IAGVRFIRCDIFKETIFDDIDRALR   85 (191)
T ss_dssp             SCTTCEEEEESCTTCHHH-HHHTT---TCSEEEEEESSCCC-----------C--CTTCEEEECCTTSSSHHHHHHHHHH
T ss_pred             CCCCCEEEEEeecCCHHH-HHHHH---cCCcEEEEeccccc-----------c--CCCeEEEEccccCHHHHHHHHHHhh
Confidence            367899999999997665 56777   38999999999852           2  15799999999764310      1 


Q ss_pred             ----CCcceeehhhhc---cCCh-------hHHHHHHHHHHhhccCCcEEEEeecCcceeeecccCCcccc-cCcEEEEE
Q 042119          201 ----GEYDCIFLAALV---GMSK-------EEKLTILGHIRKYMKDGGILLVRSAKGARAFLYPVVVEHDL-LDFEVLSA  265 (286)
Q Consensus       201 ----~~fD~V~~aalv---g~~~-------~~k~~vl~~l~~~l~pgg~lv~r~~~g~r~~lyp~v~~~~l-~gf~~~~~  265 (286)
                          +.||+|+.+...   |...       +....+++...+.|||||.+++....|-..   +.+- ..+ ..|+.+..
T Consensus        86 ~~~~~~~D~Vlsd~~~~~~g~~~~d~~~~~~l~~~~l~~a~~~LkpGG~lv~k~~~~~~~---~~~~-~~l~~~F~~v~~  161 (191)
T 3dou_A           86 EEGIEKVDDVVSDAMAKVSGIPSRDHAVSYQIGQRVMEIAVRYLRNGGNVLLKQFQGDMT---NDFI-AIWRKNFSSYKI  161 (191)
T ss_dssp             HHTCSSEEEEEECCCCCCCSCHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEEECSTHH---HHHH-HHHGGGEEEEEE
T ss_pred             cccCCcceEEecCCCcCCCCCcccCHHHHHHHHHHHHHHHHHHccCCCEEEEEEcCCCCH---HHHH-HHHHHhcCEEEE
Confidence                379999865311   1111       123568889999999999999876433211   1000 012 35888888


Q ss_pred             ecCcccc-eee--eEEEee
Q 042119          266 VHPNDDV-INS--VVLVRN  281 (286)
Q Consensus       266 ~~P~~~v-ins--vi~~r~  281 (286)
                      ..|...= -++  ++|++.
T Consensus       162 ~kP~asR~~s~E~y~v~~~  180 (191)
T 3dou_A          162 SKPPASRGSSSEIYIMFFG  180 (191)
T ss_dssp             ECC------CCEEEEEEEE
T ss_pred             ECCCCccCCCceEEEEEee
Confidence            8886542 232  666665

>3hp7_A Hemolysin, putative; structural genomics, APC64019, PSI-2, protein STR initiative, midwest center for structural genomics, MCSG; HET: MSE; 1.53A {Streptococcus thermophilus}

Probab=98.97  E-value=6.3e-10  Score=102.28  Aligned_cols=104  Identities=14%  Similarity=0.089  Sum_probs=69.2

Q ss_pred             HHHhcCC-CCCCEEEEeccCCChhhHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeE-EEEccccchhh-
Q 042119          122 ILSENGV-VQPKKVAFVGSGPMPLTSIIMAKHHLTSTHFDNFDIDEAANDVARSIVASDAEFEGRMK-FLTRDIMEVKE-  198 (286)
Q Consensus       122 ~l~~~~~-~~~~~VL~IG~G~lp~tai~lA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~g~l~~~i~-f~~~D~~~~~~-  198 (286)
                      ++..+.+ .++++|||||||++++| .++++  ....+|+|+|++++|++++.+.   .    .++. +...|+..+.. 
T Consensus        76 ~l~~~~~~~~g~~vLDiGcGTG~~t-~~L~~--~ga~~V~aVDvs~~mL~~a~r~---~----~rv~~~~~~ni~~l~~~  145 (291)
T 3hp7_A           76 ALAVFNLSVEDMITIDIGASTGGFT-DVMLQ--NGAKLVYAVDVGTNQLVWKLRQ---D----DRVRSMEQYNFRYAEPV  145 (291)
T ss_dssp             HHHHTTCCCTTCEEEEETCTTSHHH-HHHHH--TTCSEEEEECSSSSCSCHHHHT---C----TTEEEECSCCGGGCCGG
T ss_pred             HHHhcCCCccccEEEecCCCccHHH-HHHHh--CCCCEEEEEECCHHHHHHHHHh---C----cccceecccCceecchh
Confidence            3445555 46789999999997776 45665  1446999999999999986542   1    2332 22344443322 


Q ss_pred             cC--CCcceeehhhhccCChhHHHHHHHHHHhhccCCcEEEEe
Q 042119          199 QL--GEYDCIFLAALVGMSKEEKLTILGHIRKYMKDGGILLVR  239 (286)
Q Consensus       199 ~l--~~fD~V~~aalvg~~~~~k~~vl~~l~~~l~pgg~lv~r  239 (286)
                      ++  ..||+|+.+....    .-..+|.++++.|+|||.+++-
T Consensus       146 ~l~~~~fD~v~~d~sf~----sl~~vL~e~~rvLkpGG~lv~l  184 (291)
T 3hp7_A          146 DFTEGLPSFASIDVSFI----SLNLILPALAKILVDGGQVVAL  184 (291)
T ss_dssp             GCTTCCCSEEEECCSSS----CGGGTHHHHHHHSCTTCEEEEE
T ss_pred             hCCCCCCCEEEEEeeHh----hHHHHHHHHHHHcCcCCEEEEE
Confidence            11  2499887653221    2256999999999999998875

>2xyq_A Putative 2'-O-methyl transferase; transferase-viral protein complex, rossman fold; HET: SAH; 2.00A {Sars coronavirus} PDB: 2xyv_A* 2xyr_A*

Probab=98.96  E-value=2e-09  Score=98.87  Aligned_cols=135  Identities=18%  Similarity=0.198  Sum_probs=83.9

Q ss_pred             CCCCCCEEEEeccCC----ChhhHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEE-EEccccchhhcCC
Q 042119          127 GVVQPKKVAFVGSGP----MPLTSIIMAKHHLTSTHFDNFDIDEAANDVARSIVASDAEFEGRMKF-LTRDIMEVKEQLG  201 (286)
Q Consensus       127 ~~~~~~~VL~IG~G~----lp~tai~lA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~g~l~~~i~f-~~~D~~~~~~~l~  201 (286)
                      .+.++.+|||+|||.    +|-+ ..+++...++++|+|+|+++.           .    .+++| +++|+.+.+.+ +
T Consensus        60 ~l~~g~~VLDLGcGsg~~~GpGs-~~~a~~~~~~~~V~gvDis~~-----------v----~~v~~~i~gD~~~~~~~-~  122 (290)
T 2xyq_A           60 AVPYNMRVIHFGAGSDKGVAPGT-AVLRQWLPTGTLLVDSDLNDF-----------V----SDADSTLIGDCATVHTA-N  122 (290)
T ss_dssp             CCCTTCEEEEESCCCTTSBCHHH-HHHHHHSCTTCEEEEEESSCC-----------B----CSSSEEEESCGGGCCCS-S
T ss_pred             CCCCCCEEEEeCCCCCCCCCcHH-HHHHHHcCCCCEEEEEECCCC-----------C----CCCEEEEECccccCCcc-C
Confidence            457889999999943    2333 445653333799999999998           1    25789 99999875533 5


Q ss_pred             CcceeehhhhccC----------ChhHHHHHHHHHHhhccCCcEEEEeecCcce-eeecccCCcccccCcEEEEEecCcc
Q 042119          202 EYDCIFLAALVGM----------SKEEKLTILGHIRKYMKDGGILLVRSAKGAR-AFLYPVVVEHDLLDFEVLSAVHPND  270 (286)
Q Consensus       202 ~fD~V~~aalvg~----------~~~~k~~vl~~l~~~l~pgg~lv~r~~~g~r-~~lyp~v~~~~l~gf~~~~~~~P~~  270 (286)
                      .||+|+.......          ..+...++++++.+.|||||.+++....+-. .-+....   .-.||..+...++..
T Consensus       123 ~fD~Vvsn~~~~~~g~~~~d~~~~~~l~~~~l~~a~r~LkpGG~~v~~~~~~~~~~~l~~~l---~~~GF~~v~~~asr~  199 (290)
T 2xyq_A          123 KWDLIISDMYDPRTKHVTKENDSKEGFFTYLCGFIKQKLALGGSIAVKITEHSWNADLYKLM---GHFSWWTAFVTNVNA  199 (290)
T ss_dssp             CEEEEEECCCCCC---CCSCCCCCCTHHHHHHHHHHHHEEEEEEEEEEECSSSCCHHHHHHH---TTEEEEEEEEEGGGT
T ss_pred             cccEEEEcCCccccccccccccchHHHHHHHHHHHHHhcCCCcEEEEEEeccCCHHHHHHHH---HHcCCcEEEEEEcCC
Confidence            7999996421110          0122347999999999999999986532211 0000000   113676655555444


Q ss_pred             cceeeeEEEee
Q 042119          271 DVINSVVLVRN  281 (286)
Q Consensus       271 ~vinsvi~~r~  281 (286)
                      +--..++++|.
T Consensus       200 ~s~e~~lv~~~  210 (290)
T 2xyq_A          200 SSSEAFLIGAN  210 (290)
T ss_dssp             TSSCEEEEEEE
T ss_pred             CchheEEecCC
Confidence            44455666665

>2nyu_A Putative ribosomal RNA methyltransferase 2; SAM, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.76A {Homo sapiens}

Probab=98.95  E-value=1.6e-09  Score=91.40  Aligned_cols=99  Identities=17%  Similarity=0.245  Sum_probs=70.4

Q ss_pred             CCCCCEEEEeccCCChhhHHHHHhhcCCC---------cEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEE-Eccccchh
Q 042119          128 VVQPKKVAFVGSGPMPLTSIIMAKHHLTS---------THFDNFDIDEAANDVARSIVASDAEFEGRMKFL-TRDIMEVK  197 (286)
Q Consensus       128 ~~~~~~VL~IG~G~lp~tai~lA~~~~~g---------~~V~~iDid~~ai~~Ar~~~~~~g~l~~~i~f~-~~D~~~~~  197 (286)
                      +.++.+|||||||+ |..++.++++ .+.         ++|+++|+|+.+           + + .+++++ .+|+.+..
T Consensus        20 ~~~~~~vLDlGcG~-G~~~~~la~~-~~~~~~~~~~~~~~v~~vD~s~~~-----------~-~-~~~~~~~~~d~~~~~   84 (196)
T 2nyu_A           20 LRPGLRVLDCGAAP-GAWSQVAVQK-VNAAGTDPSSPVGFVLGVDLLHIF-----------P-L-EGATFLCPADVTDPR   84 (196)
T ss_dssp             CCTTCEEEEETCCS-CHHHHHHHHH-TTTTCCCTTSCCCEEEEECSSCCC-----------C-C-TTCEEECSCCTTSHH
T ss_pred             CCCCCEEEEeCCCC-CHHHHHHHHH-hccccccccCCCceEEEEechhcc-----------c-C-CCCeEEEeccCCCHH
Confidence            46789999999998 5666777773 333         899999999842           2 1 468999 99986643


Q ss_pred             h--------cCCCcceeehhhh---ccCChhHH-------HHHHHHHHhhccCCcEEEEeec
Q 042119          198 E--------QLGEYDCIFLAAL---VGMSKEEK-------LTILGHIRKYMKDGGILLVRSA  241 (286)
Q Consensus       198 ~--------~l~~fD~V~~aal---vg~~~~~k-------~~vl~~l~~~l~pgg~lv~r~~  241 (286)
                      .        +...||+|+....   .+....+.       ..+++++.+.|+|||.+++...
T Consensus        85 ~~~~~~~~~~~~~fD~V~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lv~~~~  146 (196)
T 2nyu_A           85 TSQRILEVLPGRRADVILSDMAPNATGFRDLDHDRLISLCLTLLSVTPDILQPGGTFLCKTW  146 (196)
T ss_dssp             HHHHHHHHSGGGCEEEEEECCCCCCCSCHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEEC
T ss_pred             HHHHHHHhcCCCCCcEEEeCCCCCCCCCcccCHHHHHHHHHHHHHHHHHHhcCCCEEEEEec
Confidence            2        1137999995421   11111222       4789999999999999999764

>2wk1_A NOVP; transferase, O-methyltransferase, novobiocin, TYLF superfamily; HET: SAH; 1.40A {Streptomyces caeruleus}

Probab=98.95  E-value=1.4e-09  Score=99.54  Aligned_cols=108  Identities=12%  Similarity=0.079  Sum_probs=88.7

Q ss_pred             CCCCEEEEeccCCChhhHHHHHhhcC----CCcEEEEEeCCh--------------------------HHHHHHHHHHHh
Q 042119          129 VQPKKVAFVGSGPMPLTSIIMAKHHL----TSTHFDNFDIDE--------------------------AANDVARSIVAS  178 (286)
Q Consensus       129 ~~~~~VL~IG~G~lp~tai~lA~~~~----~g~~V~~iDid~--------------------------~ai~~Ar~~~~~  178 (286)
                      ..+.+|+++|+. .|.|+++||....    ++.+|+++|..+                          ...+.+++++++
T Consensus       105 ~~pg~IlEiGv~-~G~Sai~ma~~l~~~g~~~~kI~~~DtfeG~pe~~~~~~~~d~~~~~~~~~~~~~~~~~~ar~n~~~  183 (282)
T 2wk1_A          105 NVPGDLVETGVW-RGGACILMRGILRAHDVRDRTVWVADSFQGIPDVGEDGYAGDRKMALHRRNSVLAVSEEEVRRNFRN  183 (282)
T ss_dssp             TCCCEEEEECCT-TSHHHHHHHHHHHHTTCCSCCEEEEECSSCSCCCCTTSCHHHHHHCGGGGHHHHCCCHHHHHHHHHH
T ss_pred             CCCCcEEEeecC-chHHHHHHHHHhHhcCCCCCEEEEEECCCCCCcccccccccccccccccccccchhHHHHHHHHHHH
Confidence            568899999998 6999999987321    488999999642                          147789999999


Q ss_pred             cCCC-CCCeEEEEccccchhhcC--CCcceeehhhhccCChhHHHHHHHHHHhhccCCcEEEEeec
Q 042119          179 DAEF-EGRMKFLTRDIMEVKEQL--GEYDCIFLAALVGMSKEEKLTILGHIRKYMKDGGILLVRSA  241 (286)
Q Consensus       179 ~g~l-~~~i~f~~~D~~~~~~~l--~~fD~V~~aalvg~~~~~k~~vl~~l~~~l~pgg~lv~r~~  241 (286)
                      .| + .++|+++.||+.+....+  +.||+||+++-.   -+.....|+.+.++|+|||+|++.+.
T Consensus       184 ~g-l~~~~I~li~Gda~etL~~~~~~~~d~vfIDaD~---y~~~~~~Le~~~p~L~pGGiIv~DD~  245 (282)
T 2wk1_A          184 YD-LLDEQVRFLPGWFKDTLPTAPIDTLAVLRMDGDL---YESTWDTLTNLYPKVSVGGYVIVDDY  245 (282)
T ss_dssp             TT-CCSTTEEEEESCHHHHSTTCCCCCEEEEEECCCS---HHHHHHHHHHHGGGEEEEEEEEESSC
T ss_pred             cC-CCcCceEEEEeCHHHHHhhCCCCCEEEEEEcCCc---cccHHHHHHHHHhhcCCCEEEEEcCC
Confidence            99 6 489999999998866554  369999999743   24556899999999999999999985

>1zg3_A Isoflavanone 4'-O-methyltransferase; rossman fold, plant Pro transferase; HET: 2HI SAH; 2.35A {Medicago truncatula} PDB: 1zga_A* 1zhf_A* 1zgj_A*

Probab=98.95  E-value=1.5e-09  Score=101.14  Aligned_cols=98  Identities=14%  Similarity=0.261  Sum_probs=77.0

Q ss_pred             CCCCEEEEeccCCChhhHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEccccchhhcCCCcceeeh
Q 042119          129 VQPKKVAFVGSGPMPLTSIIMAKHHLTSTHFDNFDIDEAANDVARSIVASDAEFEGRMKFLTRDIMEVKEQLGEYDCIFL  208 (286)
Q Consensus       129 ~~~~~VL~IG~G~lp~tai~lA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~g~l~~~i~f~~~D~~~~~~~l~~fD~V~~  208 (286)
                      .++.+|||||||+ |..+..+++ .+|+.+++++|+ +.+++.|++    .    .+++|+.+|..+ +  +..||+|++
T Consensus       192 ~~~~~vlDvG~G~-G~~~~~l~~-~~p~~~~~~~D~-~~~~~~a~~----~----~~v~~~~~d~~~-~--~~~~D~v~~  257 (358)
T 1zg3_A          192 EGLESLVDVGGGT-GGVTKLIHE-IFPHLKCTVFDQ-PQVVGNLTG----N----ENLNFVGGDMFK-S--IPSADAVLL  257 (358)
T ss_dssp             HTCSEEEEETCTT-SHHHHHHHH-HCTTSEEEEEEC-HHHHSSCCC----C----SSEEEEECCTTT-C--CCCCSEEEE
T ss_pred             cCCCEEEEECCCc-CHHHHHHHH-HCCCCeEEEecc-HHHHhhccc----C----CCcEEEeCccCC-C--CCCceEEEE
Confidence            4678999999997 566677777 478999999999 788877764    1    359999999866 3  346999997


Q ss_pred             hhhc-cCChhHHHHHHHHHHhhccC---CcEEEEee
Q 042119          209 AALV-GMSKEEKLTILGHIRKYMKD---GGILLVRS  240 (286)
Q Consensus       209 aalv-g~~~~~k~~vl~~l~~~l~p---gg~lv~r~  240 (286)
                      .... .++.+...++++++++.|+|   ||++++.+
T Consensus       258 ~~vlh~~~d~~~~~~l~~~~~~L~p~~~gG~l~i~e  293 (358)
T 1zg3_A          258 KWVLHDWNDEQSLKILKNSKEAISHKGKDGKVIIID  293 (358)
T ss_dssp             ESCGGGSCHHHHHHHHHHHHHHTGGGGGGCEEEEEE
T ss_pred             cccccCCCHHHHHHHHHHHHHhCCCCCCCcEEEEEE
Confidence            6544 45555556999999999999   99988864

>1uwv_A 23S rRNA (uracil-5-)-methyltransferase RUMA; RNA modification, iron-sulfur cluster, RNA processing; 1.95A {Escherichia coli} SCOP: b.40.4.12 c.66.1.40 PDB: 2bh2_A*

Probab=98.94  E-value=5.5e-09  Score=100.51  Aligned_cols=101  Identities=14%  Similarity=0.135  Sum_probs=78.1

Q ss_pred             CCCCCCEEEEeccCCChhhHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEccccchhh----cCCC
Q 042119          127 GVVQPKKVAFVGSGPMPLTSIIMAKHHLTSTHFDNFDIDEAANDVARSIVASDAEFEGRMKFLTRDIMEVKE----QLGE  202 (286)
Q Consensus       127 ~~~~~~~VL~IG~G~lp~tai~lA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~g~l~~~i~f~~~D~~~~~~----~l~~  202 (286)
                      ...++.+|||+|||+ |.-++.+|+   .+.+|+|+|+|+++++.|+++++..| + .+++|+++|+.+...    ..+.
T Consensus       283 ~~~~~~~VLDlgcG~-G~~~~~la~---~~~~V~gvD~s~~al~~A~~n~~~~~-~-~~v~f~~~d~~~~l~~~~~~~~~  356 (433)
T 1uwv_A          283 DVQPEDRVLDLFCGM-GNFTLPLAT---QAASVVGVEGVPALVEKGQQNARLNG-L-QNVTFYHENLEEDVTKQPWAKNG  356 (433)
T ss_dssp             TCCTTCEEEEESCTT-TTTHHHHHT---TSSEEEEEESCHHHHHHHHHHHHHTT-C-CSEEEEECCTTSCCSSSGGGTTC
T ss_pred             cCCCCCEEEECCCCC-CHHHHHHHh---hCCEEEEEeCCHHHHHHHHHHHHHcC-C-CceEEEECCHHHHhhhhhhhcCC
Confidence            456788999999995 677788888   37899999999999999999999998 4 489999999987332    2347


Q ss_pred             cceeehhhhc-cCChhHHHHHHHHHHhhccCCcEEEEe
Q 042119          203 YDCIFLAALV-GMSKEEKLTILGHIRKYMKDGGILLVR  239 (286)
Q Consensus       203 fD~V~~aalv-g~~~~~k~~vl~~l~~~l~pgg~lv~r  239 (286)
                      ||+|+++--- |.     .++++.+.+ ++|++++.+.
T Consensus       357 fD~Vv~dPPr~g~-----~~~~~~l~~-~~p~~ivyvs  388 (433)
T 1uwv_A          357 FDKVLLDPARAGA-----AGVMQQIIK-LEPIRIVYVS  388 (433)
T ss_dssp             CSEEEECCCTTCC-----HHHHHHHHH-HCCSEEEEEE
T ss_pred             CCEEEECCCCccH-----HHHHHHHHh-cCCCeEEEEE
Confidence            9999976321 21     146666664 6888877664

>3ll7_A Putative methyltransferase; methytransferase, structural genomics, MCSG, PSI-2, protein initiative; HET: MSE; 1.80A {Porphyromonas gingivalis}

Probab=98.93  E-value=1.7e-09  Score=103.85  Aligned_cols=75  Identities=16%  Similarity=0.104  Sum_probs=64.1

Q ss_pred             CCCCEEEEeccCCChhhHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhc--CCCCCCeEEEEccccchhhcC--CCcc
Q 042119          129 VQPKKVAFVGSGPMPLTSIIMAKHHLTSTHFDNFDIDEAANDVARSIVASD--AEFEGRMKFLTRDIMEVKEQL--GEYD  204 (286)
Q Consensus       129 ~~~~~VL~IG~G~lp~tai~lA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~--g~l~~~i~f~~~D~~~~~~~l--~~fD  204 (286)
                      .++.+|||+|||. |..++.+|+   .+.+|+++|+|+++++.|+++++..  | + ++++|+++|+.+.....  +.||
T Consensus        92 ~~g~~VLDLgcG~-G~~al~LA~---~g~~V~~VD~s~~~l~~Ar~N~~~~~~g-l-~~i~~i~~Da~~~L~~~~~~~fD  165 (410)
T 3ll7_A           92 REGTKVVDLTGGL-GIDFIALMS---KASQGIYIERNDETAVAARHNIPLLLNE-G-KDVNILTGDFKEYLPLIKTFHPD  165 (410)
T ss_dssp             CTTCEEEESSCSS-SHHHHHHHT---TCSEEEEEESCHHHHHHHHHHHHHHSCT-T-CEEEEEESCGGGSHHHHHHHCCS
T ss_pred             CCCCEEEEeCCCc-hHHHHHHHh---cCCEEEEEECCHHHHHHHHHhHHHhccC-C-CcEEEEECcHHHhhhhccCCCce
Confidence            3489999999995 777888988   5789999999999999999999998  8 5 78999999998753322  4799


Q ss_pred             eeehh
Q 042119          205 CIFLA  209 (286)
Q Consensus       205 ~V~~a  209 (286)
                      +||++
T Consensus       166 vV~lD  170 (410)
T 3ll7_A          166 YIYVD  170 (410)
T ss_dssp             EEEEC
T ss_pred             EEEEC
Confidence            99986

>1m6y_A S-adenosyl-methyltransferase MRAW; SAM-dependent methyltransferase fold, protein-cofactor product complex, structural genomics, PSI; HET: SAH; 1.90A {Thermotoga maritima} SCOP: a.60.13.1 c.66.1.23 PDB: 1n2x_A*

Probab=98.88  E-value=6.3e-09  Score=95.93  Aligned_cols=79  Identities=13%  Similarity=0.107  Sum_probs=64.2

Q ss_pred             CCCCCCEEEEeccCCChhhHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEccccchhhc-----CC
Q 042119          127 GVVQPKKVAFVGSGPMPLTSIIMAKHHLTSTHFDNFDIDEAANDVARSIVASDAEFEGRMKFLTRDIMEVKEQ-----LG  201 (286)
Q Consensus       127 ~~~~~~~VL~IG~G~lp~tai~lA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~g~l~~~i~f~~~D~~~~~~~-----l~  201 (286)
                      .+.++.+|||+|||+++.| +.++++ .++++|+|+|+|++|++.|++.++..|   ++++|+++|..+++..     ..
T Consensus        23 ~~~~g~~vLD~g~G~G~~s-~~la~~-~~~~~VigvD~d~~al~~A~~~~~~~g---~~v~~v~~d~~~l~~~l~~~g~~   97 (301)
T 1m6y_A           23 KPEDEKIILDCTVGEGGHS-RAILEH-CPGCRIIGIDVDSEVLRIAEEKLKEFS---DRVSLFKVSYREADFLLKTLGIE   97 (301)
T ss_dssp             CCCTTCEEEETTCTTSHHH-HHHHHH-CTTCEEEEEESCHHHHHHHHHHTGGGT---TTEEEEECCGGGHHHHHHHTTCS
T ss_pred             CCCCCCEEEEEeCCcCHHH-HHHHHH-CCCCEEEEEECCHHHHHHHHHHHHhcC---CcEEEEECCHHHHHHHHHhcCCC
Confidence            5678899999999986665 556652 568999999999999999999988776   5899999999876531     14


Q ss_pred             Ccceeehhh
Q 042119          202 EYDCIFLAA  210 (286)
Q Consensus       202 ~fD~V~~aa  210 (286)
                      .||.|+++.
T Consensus        98 ~~D~Vl~D~  106 (301)
T 1m6y_A           98 KVDGILMDL  106 (301)
T ss_dssp             CEEEEEEEC
T ss_pred             CCCEEEEcC
Confidence            799998764

>3gru_A Dimethyladenosine transferase; rossman fold, ribosomal assem adenosyl-L-methionine, rRNA, methyltransferase, RNA-binding processing; HET: AMP; 1.60A {Methanocaldococcus jannaschii} PDB: 3grr_A* 3grv_A* 3gry_A* 3fyd_A 3fyc_A*

Probab=98.85  E-value=2.1e-08  Score=92.15  Aligned_cols=80  Identities=14%  Similarity=0.177  Sum_probs=63.1

Q ss_pred             HHHhcCCCCCCEEEEeccCCChhhHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEccccchhhcCC
Q 042119          122 ILSENGVVQPKKVAFVGSGPMPLTSIIMAKHHLTSTHFDNFDIDEAANDVARSIVASDAEFEGRMKFLTRDIMEVKEQLG  201 (286)
Q Consensus       122 ~l~~~~~~~~~~VL~IG~G~lp~tai~lA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~g~l~~~i~f~~~D~~~~~~~l~  201 (286)
                      .+....+.++++|||||||++.+ +..+++   .+.+|++||+|+++++.+++.++..    ++++++++|+.++..+..
T Consensus        42 Iv~~l~~~~~~~VLEIG~G~G~l-T~~La~---~~~~V~aVEid~~li~~a~~~~~~~----~~v~vi~gD~l~~~~~~~  113 (295)
T 3gru_A           42 AVESANLTKDDVVLEIGLGKGIL-TEELAK---NAKKVYVIEIDKSLEPYANKLKELY----NNIEIIWGDALKVDLNKL  113 (295)
T ss_dssp             HHHHTTCCTTCEEEEECCTTSHH-HHHHHH---HSSEEEEEESCGGGHHHHHHHHHHC----SSEEEEESCTTTSCGGGS
T ss_pred             HHHhcCCCCcCEEEEECCCchHH-HHHHHh---cCCEEEEEECCHHHHHHHHHHhccC----CCeEEEECchhhCCcccC
Confidence            34445677889999999997554 566776   3789999999999999999998732    479999999987655444


Q ss_pred             Ccceeehh
Q 042119          202 EYDCIFLA  209 (286)
Q Consensus       202 ~fD~V~~a  209 (286)
                      .||.|+..
T Consensus       114 ~fD~Iv~N  121 (295)
T 3gru_A          114 DFNKVVAN  121 (295)
T ss_dssp             CCSEEEEE
T ss_pred             CccEEEEe
Confidence            69998843

>2r6z_A UPF0341 protein in RSP 3' region; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 1.80A {Neisseria gonorrhoeae}

Probab=98.85  E-value=1.5e-09  Score=97.81  Aligned_cols=78  Identities=15%  Similarity=0.121  Sum_probs=65.1

Q ss_pred             CCCCCEEEEeccCCChhhHHHHHhhcCCCcEEEEEeCCh-------HHHHHHHHHHHhcCCCCCCeEEEEccccchhhcC
Q 042119          128 VVQPKKVAFVGSGPMPLTSIIMAKHHLTSTHFDNFDIDE-------AANDVARSIVASDAEFEGRMKFLTRDIMEVKEQL  200 (286)
Q Consensus       128 ~~~~~~VL~IG~G~lp~tai~lA~~~~~g~~V~~iDid~-------~ai~~Ar~~~~~~g~l~~~i~f~~~D~~~~~~~l  200 (286)
                      ..++.+|||+|||. |..++.+|+   .|++|+++|+|+       ++++.|+++++..| +.++|+|+++|+.+....+
T Consensus        81 ~~~~~~VLDlgcG~-G~~a~~lA~---~g~~V~~vD~s~~~~~ll~~~l~~a~~n~~~~~-~~~ri~~~~~d~~~~l~~~  155 (258)
T 2r6z_A           81 HTAHPTVWDATAGL-GRDSFVLAS---LGLTVTAFEQHPAVACLLSDGIRRALLNPETQD-TAARINLHFGNAAEQMPAL  155 (258)
T ss_dssp             GGGCCCEEETTCTT-CHHHHHHHH---TTCCEEEEECCHHHHHHHHHHHHHHHHSHHHHH-HHTTEEEEESCHHHHHHHH
T ss_pred             cCCcCeEEEeeCcc-CHHHHHHHH---hCCEEEEEECChhhhHHHHHHHHHHHhHHHhhC-CccCeEEEECCHHHHHHhh
Confidence            35678999999995 777888998   478999999999       99999999988877 5678999999998864322


Q ss_pred             ----CCcceeehhh
Q 042119          201 ----GEYDCIFLAA  210 (286)
Q Consensus       201 ----~~fD~V~~aa  210 (286)
                          ..||+|+++-
T Consensus       156 ~~~~~~fD~V~~dP  169 (258)
T 2r6z_A          156 VKTQGKPDIVYLDP  169 (258)
T ss_dssp             HHHHCCCSEEEECC
T ss_pred             hccCCCccEEEECC
Confidence                4799999853

>2qy6_A UPF0209 protein YFCK; structural genomics, unknown function, PSI-2, protein struct initiative; 2.00A {Escherichia coli}

Probab=98.85  E-value=7.3e-09  Score=93.45  Aligned_cols=113  Identities=20%  Similarity=0.194  Sum_probs=81.2

Q ss_pred             CCCCEEEEeccCCChhhHHHHHhhc------CCC-----cEEEEEeCCh---H-----------HHHHHHHHHHh-----
Q 042119          129 VQPKKVAFVGSGPMPLTSIIMAKHH------LTS-----THFDNFDIDE---A-----------ANDVARSIVAS-----  178 (286)
Q Consensus       129 ~~~~~VL~IG~G~lp~tai~lA~~~------~~g-----~~V~~iDid~---~-----------ai~~Ar~~~~~-----  178 (286)
                      .++.+||+||+| +|++++.+++..      .|.     .+|+++|.+|   +           ..++|+++++.     
T Consensus        59 ~~~~~ILEiGfG-tG~n~l~~~~~~~~~~~~~p~~~~~~l~~isiE~~p~~~~~l~~a~~~~p~l~~~a~~l~~~w~~~~  137 (257)
T 2qy6_A           59 HPLFVVAESGFG-TGLNFLTLWQAFDQFREAHPQAQLQRLHFISFEKFPLTRADLALAHQHWPELAPWAEQLQAQWPMPL  137 (257)
T ss_dssp             SSEEEEEESCCT-TSHHHHHHHHHHHHHHHHCTTSSCCEEEEEEEESSCCCHHHHHHHHTTCGGGHHHHHHHHHTCCCSC
T ss_pred             CCCCEEEEECCC-hHHHHHHHHHHHHhhhhhCCCCCcceeEEEEEECCcCCHHHHHHHHhcChhHHHHHHHHHHhccccc
Confidence            456799999999 699998877632      453     5999999987   3           44478888775     


Q ss_pred             -------cCCCCCCeEEEEccccchhhcCC-----Ccceeehhhhcc-CChhH-HHHHHHHHHhhccCCcEEEEeecC
Q 042119          179 -------DAEFEGRMKFLTRDIMEVKEQLG-----EYDCIFLAALVG-MSKEE-KLTILGHIRKYMKDGGILLVRSAK  242 (286)
Q Consensus       179 -------~g~l~~~i~f~~~D~~~~~~~l~-----~fD~V~~aalvg-~~~~~-k~~vl~~l~~~l~pgg~lv~r~~~  242 (286)
                             +..-..+++++.||+.+....+.     .||+||++++.. ..++. ..++++.+++.|+|||+++.=++.
T Consensus       138 ~g~~r~~~~~~~~~l~l~~GDa~~~l~~~~~~~~~~~D~iflD~fsp~~~p~lw~~~~l~~l~~~L~pGG~l~tysaa  215 (257)
T 2qy6_A          138 PGCHRLLLDEGRVTLDLWFGDINELISQLDDSLNQKVDAWFLDGFAPAKNPDMWTQNLFNAMARLARPGGTLATFTSA  215 (257)
T ss_dssp             SEEEEEEEC--CEEEEEEESCHHHHGGGSCGGGTTCEEEEEECSSCTTTCGGGCCHHHHHHHHHHEEEEEEEEESCCB
T ss_pred             cchhheeccCCceEEEEEECcHHHHHhhcccccCCeEEEEEECCCCcccChhhcCHHHHHHHHHHcCCCcEEEEEeCC
Confidence                   11001467899999998655542     699999987641 11111 357999999999999999974443

>2oxt_A Nucleoside-2'-O-methyltransferase; flavivirus, viral enzyme, RNA capping, S-adenosyl-L-methionine, viral protein; HET: SAM; 2.90A {Meaban virus}

Probab=98.82  E-value=6.2e-10  Score=100.75  Aligned_cols=106  Identities=14%  Similarity=0.111  Sum_probs=70.8

Q ss_pred             cCCCCCCEEEEeccCCChhhHHHHHhhcCCCcEEEEEeCChHHHHHHHHHH-HhcCCCCCCeEEE--EccccchhhcCCC
Q 042119          126 NGVVQPKKVAFVGSGPMPLTSIIMAKHHLTSTHFDNFDIDEAANDVARSIV-ASDAEFEGRMKFL--TRDIMEVKEQLGE  202 (286)
Q Consensus       126 ~~~~~~~~VL~IG~G~lp~tai~lA~~~~~g~~V~~iDid~~ai~~Ar~~~-~~~g~l~~~i~f~--~~D~~~~~~~l~~  202 (286)
                      ..+.++.+||||||||+++| ..+|+   . .+|+|||+++ ++..+++.. .... .+.++.|+  ++|+.+++  ...
T Consensus        70 ~~~~~g~~VLDlGcGtG~~s-~~la~---~-~~V~gvD~s~-m~~~a~~~~~~~~~-~~~~v~~~~~~~D~~~l~--~~~  140 (265)
T 2oxt_A           70 GYVELTGRVVDLGCGRGGWS-YYAAS---R-PHVMDVRAYT-LGVGGHEVPRITES-YGWNIVKFKSRVDIHTLP--VER  140 (265)
T ss_dssp             TSCCCCEEEEEESCTTSHHH-HHHHT---S-TTEEEEEEEC-CCCSSCCCCCCCCB-TTGGGEEEECSCCTTTSC--CCC
T ss_pred             CCCCCCCEEEEeCcCCCHHH-HHHHH---c-CcEEEEECch-hhhhhhhhhhhhhc-cCCCeEEEecccCHhHCC--CCC
Confidence            34578899999999997765 66777   2 7899999998 432222110 0001 11268999  99998765  357


Q ss_pred             cceeehhhh-c-cCChhH-H--HHHHHHHHhhccCCc--EEEEee
Q 042119          203 YDCIFLAAL-V-GMSKEE-K--LTILGHIRKYMKDGG--ILLVRS  240 (286)
Q Consensus       203 fD~V~~aal-v-g~~~~~-k--~~vl~~l~~~l~pgg--~lv~r~  240 (286)
                      ||+|+.+.. + +...-+ .  ..+|+.+.+.|+|||  .+++..
T Consensus       141 fD~V~sd~~~~~~~~~~d~~~~l~~L~~~~r~LkpGG~~~fv~kv  185 (265)
T 2oxt_A          141 TDVIMCDVGESSPKWSVESERTIKILELLEKWKVKNPSADFVVKV  185 (265)
T ss_dssp             CSEEEECCCCCCSCHHHHHHHHHHHHHHHHHHHHHCTTCEEEEEE
T ss_pred             CcEEEEeCcccCCccchhHHHHHHHHHHHHHHhccCCCeEEEEEe
Confidence            999986532 1 111111 1  248999999999999  999864

>2f8l_A Hypothetical protein LMO1582; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE SAM; 2.20A {Listeria monocytogenes} SCOP: c.66.1.45

Probab=98.81  E-value=8.8e-09  Score=95.72  Aligned_cols=110  Identities=17%  Similarity=0.228  Sum_probs=81.2

Q ss_pred             CCCCCEEEEeccCCChhhHHHHHhhcCC-----CcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEccccchhhcCCC
Q 042119          128 VVQPKKVAFVGSGPMPLTSIIMAKHHLT-----STHFDNFDIDEAANDVARSIVASDAEFEGRMKFLTRDIMEVKEQLGE  202 (286)
Q Consensus       128 ~~~~~~VL~IG~G~lp~tai~lA~~~~~-----g~~V~~iDid~~ai~~Ar~~~~~~g~l~~~i~f~~~D~~~~~~~l~~  202 (286)
                      ..++.+|+|+|||+++++. .++++ .+     +.+|+|+|+|+.+++.|+..+...| +  ++++.++|..+.. ....
T Consensus       128 ~~~~~~VlDp~cGsG~~l~-~~~~~-~~~~~~~~~~v~GiDi~~~~~~~a~~n~~~~g-~--~~~i~~~D~l~~~-~~~~  201 (344)
T 2f8l_A          128 KKKNVSILDPACGTANLLT-TVINQ-LELKGDVDVHASGVDVDDLLISLALVGADLQR-Q--KMTLLHQDGLANL-LVDP  201 (344)
T ss_dssp             TCSEEEEEETTCTTSHHHH-HHHHH-HHTTSSCEEEEEEEESCHHHHHHHHHHHHHHT-C--CCEEEESCTTSCC-CCCC
T ss_pred             CCCCCEEEeCCCCccHHHH-HHHHH-HHHhcCCCceEEEEECCHHHHHHHHHHHHhCC-C--CceEEECCCCCcc-ccCC
Confidence            3467899999999876654 44442 22     2899999999999999999998888 4  6899999986532 2357


Q ss_pred             cceeehhhhccC-ChhH----------------HHHHHHHHHhhccCCcEEEEeecCc
Q 042119          203 YDCIFLAALVGM-SKEE----------------KLTILGHIRKYMKDGGILLVRSAKG  243 (286)
Q Consensus       203 fD~V~~aalvg~-~~~~----------------k~~vl~~l~~~l~pgg~lv~r~~~g  243 (286)
                      ||+|+..--.|. +..+                ...+++++.+.|+|||++++-.+++
T Consensus       202 fD~Ii~NPPfg~~~~~~~~~~~~~~~~~g~~~~~~~~l~~~~~~Lk~gG~~~~v~p~~  259 (344)
T 2f8l_A          202 VDVVISDLPVGYYPDDENAKTFELCREEGHSFAHFLFIEQGMRYTKPGGYLFFLVPDA  259 (344)
T ss_dssp             EEEEEEECCCSEESCHHHHTTSTTCCSSSCEEHHHHHHHHHHHTEEEEEEEEEEEEGG
T ss_pred             ccEEEECCCCCCcCchhhhhhccccCCCCcchHHHHHHHHHHHHhCCCCEEEEEECch
Confidence            999986532111 1111                1258999999999999998887655

>3k0b_A Predicted N6-adenine-specific DNA methylase; methylase,PF01170, putative RNA methylase, PSI,MCSG, structu genomics; 1.50A {Listeria monocytogenes str}

Probab=98.79  E-value=6.5e-08  Score=92.20  Aligned_cols=116  Identities=12%  Similarity=0.068  Sum_probs=81.1

Q ss_pred             HHhcCCCCCCEEEEeccCCChhhHHHHHhh---cCCC----------------------------------cEEEEEeCC
Q 042119          123 LSENGVVQPKKVAFVGSGPMPLTSIIMAKH---HLTS----------------------------------THFDNFDID  165 (286)
Q Consensus       123 l~~~~~~~~~~VL~IG~G~lp~tai~lA~~---~~~g----------------------------------~~V~~iDid  165 (286)
                      +...+..++.+|+|.|||++.+ ++..|..   ..||                                  .+|+|+|+|
T Consensus       194 l~l~~~~~~~~vlDp~CGSGt~-~ieaa~~~~~~apg~~R~f~f~~w~~~~~~~w~~~~~~a~~~~~~~~~~~V~GvDid  272 (393)
T 3k0b_A          194 VLLTSWHPDRPFYDPVCGSGTI-PIEAALIGQNIAPGFNREFVSETWDWMPKQVWADARQEAEDLANYDQPLNIIGGDID  272 (393)
T ss_dssp             HHHSCCCTTSCEEETTCTTSHH-HHHHHHHHTTCCTTTTSCCGGGGCTTSCHHHHHHHHHHHHHHCCTTCCCCEEEEESC
T ss_pred             HHHhCCCCCCeEEEcCCCCCHH-HHHHHHHhcCcCCCccccchhhccccCCHHHHHHHHHHHHHhhcccCCceEEEEECC
Confidence            3445667889999999997544 3444431   1122                                  579999999


Q ss_pred             hHHHHHHHHHHHhcCCCCCCeEEEEccccchhhcCCCcceeehhhhccCCh---hHHHHHHHHHHhhccC--CcEEEEee
Q 042119          166 EAANDVARSIVASDAEFEGRMKFLTRDIMEVKEQLGEYDCIFLAALVGMSK---EEKLTILGHIRKYMKD--GGILLVRS  240 (286)
Q Consensus       166 ~~ai~~Ar~~~~~~g~l~~~i~f~~~D~~~~~~~l~~fD~V~~aalvg~~~---~~k~~vl~~l~~~l~p--gg~lv~r~  240 (286)
                      +.|++.|+++++..| +.++++|+++|+.+++.+ ..||+|+..---|...   ++..+++..+.+.+++  |+.+.+-+
T Consensus       273 ~~al~~Ar~Na~~~g-l~~~I~~~~~D~~~~~~~-~~fD~Iv~NPPYg~rl~~~~~l~~ly~~lg~~lk~~~g~~~~iit  350 (393)
T 3k0b_A          273 ARLIEIAKQNAVEAG-LGDLITFRQLQVADFQTE-DEYGVVVANPPYGERLEDEEAVRQLYREMGIVYKRMPTWSVYVLT  350 (393)
T ss_dssp             HHHHHHHHHHHHHTT-CTTCSEEEECCGGGCCCC-CCSCEEEECCCCCCSHHHHHHHHHHHHHHHHHHHTCTTCEEEEEE
T ss_pred             HHHHHHHHHHHHHcC-CCCceEEEECChHhCCCC-CCCCEEEECCCCccccCCchhHHHHHHHHHHHHhcCCCCEEEEEE
Confidence            999999999999999 778899999999887653 4799998762212111   2334456666666665  77666554


Q ss_pred             c
Q 042119          241 A  241 (286)
Q Consensus       241 ~  241 (286)
                      +
T Consensus       351 ~  351 (393)
T 3k0b_A          351 S  351 (393)
T ss_dssp             C
T ss_pred             C
Confidence            3

>2wa2_A Non-structural protein 5; transferase, S-adenosyl-L- methionine, virion, membrane, flavivirus, N7-methyltransferase, 2'-O-methyltransferase; HET: SAM; 1.80A {Modoc virus} PDB: 2wa1_A*

Probab=98.79  E-value=1.1e-09  Score=99.61  Aligned_cols=105  Identities=14%  Similarity=0.141  Sum_probs=70.5

Q ss_pred             CCCCCCEEEEeccCCChhhHHHHHhhcCCCcEEEEEeCChHHHHHHHHHH-HhcCCCCCCeEEE--EccccchhhcCCCc
Q 042119          127 GVVQPKKVAFVGSGPMPLTSIIMAKHHLTSTHFDNFDIDEAANDVARSIV-ASDAEFEGRMKFL--TRDIMEVKEQLGEY  203 (286)
Q Consensus       127 ~~~~~~~VL~IG~G~lp~tai~lA~~~~~g~~V~~iDid~~ai~~Ar~~~-~~~g~l~~~i~f~--~~D~~~~~~~l~~f  203 (286)
                      ...++.+|||+||||+++| ..+|+   . .+|+|||+++ ++..|++.. .... .+.+++|+  ++|+.+++  .+.|
T Consensus        79 ~~~~g~~VLDlGcGtG~~s-~~la~---~-~~V~gVD~s~-m~~~a~~~~~~~~~-~~~~v~~~~~~~D~~~l~--~~~f  149 (276)
T 2wa2_A           79 GVELKGTVVDLGCGRGSWS-YYAAS---Q-PNVREVKAYT-LGTSGHEKPRLVET-FGWNLITFKSKVDVTKME--PFQA  149 (276)
T ss_dssp             SCCCCEEEEEESCTTCHHH-HHHHT---S-TTEEEEEEEC-CCCTTSCCCCCCCC-TTGGGEEEECSCCGGGCC--CCCC
T ss_pred             CCCCCCEEEEeccCCCHHH-HHHHH---c-CCEEEEECch-hhhhhhhchhhhhh-cCCCeEEEeccCcHhhCC--CCCc
Confidence            4567899999999997765 66777   2 6899999998 533332210 0011 11278999  99998765  3579


Q ss_pred             ceeehhhh-c-cCCh-hHH--HHHHHHHHhhccCCc--EEEEee
Q 042119          204 DCIFLAAL-V-GMSK-EEK--LTILGHIRKYMKDGG--ILLVRS  240 (286)
Q Consensus       204 D~V~~aal-v-g~~~-~~k--~~vl~~l~~~l~pgg--~lv~r~  240 (286)
                      |+|+.+.. + +... ...  .++++.+.+.|+|||  .+++..
T Consensus       150 D~Vvsd~~~~~~~~~~d~~~~l~~L~~~~r~LkpGG~~~~v~~~  193 (276)
T 2wa2_A          150 DTVLCDIGESNPTAAVEASRTLTVLNVISRWLEYNQGCGFCVKV  193 (276)
T ss_dssp             SEEEECCCCCCSCHHHHHHHHHHHHHHHHHHHHHSTTCEEEEEE
T ss_pred             CEEEECCCcCCCchhhhHHHHHHHHHHHHHHhccCCCcEEEEEe
Confidence            99986532 1 1111 111  248999999999999  988854

>2p41_A Type II methyltransferase; vizier, viral enzymes involved in replication, dengue virus methyltransferase, structural genomics; HET: G1G SAH CIT; 1.80A {Dengue virus 2} SCOP: c.66.1.25 PDB: 2p1d_A* 1l9k_A* 2p3o_A* 2p3q_A* 2p40_A* 2p3l_A* 1r6a_A*

Probab=98.76  E-value=3.5e-09  Score=97.66  Aligned_cols=104  Identities=11%  Similarity=0.102  Sum_probs=70.5

Q ss_pred             CCCCCCEEEEeccCCChhhHHHHHhhcCCCcEEEEEeC----ChHHHHHHHHHHHhcCCCCCCeEEEEc-cccchhhcCC
Q 042119          127 GVVQPKKVAFVGSGPMPLTSIIMAKHHLTSTHFDNFDI----DEAANDVARSIVASDAEFEGRMKFLTR-DIMEVKEQLG  201 (286)
Q Consensus       127 ~~~~~~~VL~IG~G~lp~tai~lA~~~~~g~~V~~iDi----d~~ai~~Ar~~~~~~g~l~~~i~f~~~-D~~~~~~~l~  201 (286)
                      ...++.+||||||||++.| ..+|+   . ++|+|+|+    ++.+++..+  .+..|  .++++|+++ |+.+++  ..
T Consensus        79 ~~~~g~~VLDlGcG~G~~s-~~la~---~-~~V~gvD~~~~~~~~~~~~~~--~~~~~--~~~v~~~~~~D~~~l~--~~  147 (305)
T 2p41_A           79 LVTPEGKVVDLGCGRGGWS-YYCGG---L-KNVREVKGLTKGGPGHEEPIP--MSTYG--WNLVRLQSGVDVFFIP--PE  147 (305)
T ss_dssp             SSCCCEEEEEETCTTSHHH-HHHHT---S-TTEEEEEEECCCSTTSCCCCC--CCSTT--GGGEEEECSCCTTTSC--CC
T ss_pred             CCCCCCEEEEEcCCCCHHH-HHHHh---c-CCEEEEeccccCchhHHHHHH--hhhcC--CCCeEEEeccccccCC--cC
Confidence            3467899999999997775 66777   2 58999999    554432111  11222  157999999 987654  35


Q ss_pred             Ccceeehhhhc--cCChhHH---HHHHHHHHhhccCCcEEEEeec
Q 042119          202 EYDCIFLAALV--GMSKEEK---LTILGHIRKYMKDGGILLVRSA  241 (286)
Q Consensus       202 ~fD~V~~aalv--g~~~~~k---~~vl~~l~~~l~pgg~lv~r~~  241 (286)
                      .||+|+.+...  +....+.   ..+|..+.+.|||||.+++...
T Consensus       148 ~fD~V~sd~~~~~g~~~~d~~~~l~~L~~~~~~LkpGG~~v~kv~  192 (305)
T 2p41_A          148 RCDTLLCDIGESSPNPTVEAGRTLRVLNLVENWLSNNTQFCVKVL  192 (305)
T ss_dssp             CCSEEEECCCCCCSSHHHHHHHHHHHHHHHHHHCCTTCEEEEEES
T ss_pred             CCCEEEECCccccCcchhhHHHHHHHHHHHHHHhCCCCEEEEEeC
Confidence            79999865321  2211122   2588999999999999998653

>3ldg_A Putative uncharacterized protein SMU.472; YPSC, methyltransferase, transferase; HET: SAH; 1.96A {Streptococcus mutans}

Probab=98.76  E-value=7.6e-08  Score=91.53  Aligned_cols=116  Identities=11%  Similarity=0.085  Sum_probs=83.6

Q ss_pred             HHhcCCCCCCEEEEeccCCChhhHHHHHhh---cCCC----------------------------------cEEEEEeCC
Q 042119          123 LSENGVVQPKKVAFVGSGPMPLTSIIMAKH---HLTS----------------------------------THFDNFDID  165 (286)
Q Consensus       123 l~~~~~~~~~~VL~IG~G~lp~tai~lA~~---~~~g----------------------------------~~V~~iDid  165 (286)
                      +...+..++..|+|.+||++.+ ++..|..   ..||                                  .+|+|+|+|
T Consensus       187 l~l~~~~~~~~llDp~CGSGt~-lIEAa~~a~~iapg~~R~f~f~~w~~~~~~~w~~~~~~a~~~~~~~~~~~v~GvDid  265 (384)
T 3ldg_A          187 ILLSNWFPDKPFVDPTCGSGTF-CIEAAMIGMNIAPGFNRDFAFEEWPWVDEALVTRVRNEADEQADYDIQLDISGFDFD  265 (384)
T ss_dssp             HHHTTCCTTSCEEETTCTTSHH-HHHHHHHHTTCCTTTTCCCGGGGCTTSCHHHHHHHHHHHHHHCCTTCCCCEEEEESC
T ss_pred             HHHhCCCCCCeEEEeCCcCCHH-HHHHHHHhcCcCCCccccchhhhhccCCHHHHHHHHHHHHHhhhccCCceEEEEECC
Confidence            4445667889999999997544 3444431   1122                                  569999999


Q ss_pred             hHHHHHHHHHHHhcCCCCCCeEEEEccccchhhcCCCcceeehhhhcc---CChhHHHHHHHHHHhhccC--CcEEEEee
Q 042119          166 EAANDVARSIVASDAEFEGRMKFLTRDIMEVKEQLGEYDCIFLAALVG---MSKEEKLTILGHIRKYMKD--GGILLVRS  240 (286)
Q Consensus       166 ~~ai~~Ar~~~~~~g~l~~~i~f~~~D~~~~~~~l~~fD~V~~aalvg---~~~~~k~~vl~~l~~~l~p--gg~lv~r~  240 (286)
                      +.|++.|+++++..| +.++++|+++|+.+++.. ..||+|+..---|   .+.++..+++..+.+.+++  |+.+.+-+
T Consensus       266 ~~al~~Ar~Na~~~g-l~~~I~~~~~D~~~l~~~-~~fD~Iv~NPPYG~rl~~~~~l~~ly~~lg~~lk~~~g~~~~iit  343 (384)
T 3ldg_A          266 GRMVEIARKNAREVG-LEDVVKLKQMRLQDFKTN-KINGVLISNPPYGERLLDDKAVDILYNEMGETFAPLKTWSQFILT  343 (384)
T ss_dssp             HHHHHHHHHHHHHTT-CTTTEEEEECCGGGCCCC-CCSCEEEECCCCTTTTSCHHHHHHHHHHHHHHHTTCTTSEEEEEE
T ss_pred             HHHHHHHHHHHHHcC-CCCceEEEECChHHCCcc-CCcCEEEECCchhhccCCHHHHHHHHHHHHHHHhhCCCcEEEEEE
Confidence            999999999999999 788999999999887654 4799998752211   1234556677777777776  77766654


Q ss_pred             c
Q 042119          241 A  241 (286)
Q Consensus       241 ~  241 (286)
                      +
T Consensus       344 ~  344 (384)
T 3ldg_A          344 N  344 (384)
T ss_dssp             S
T ss_pred             C
Confidence            3

>3ldu_A Putative methylase; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; HET: MSE GTP; 1.70A {Clostridium difficile}

Probab=98.73  E-value=4.4e-08  Score=93.06  Aligned_cols=115  Identities=15%  Similarity=0.135  Sum_probs=81.6

Q ss_pred             HHhcCCCCCCEEEEeccCCChhhHHHHHhhc---CC----------------------------------CcEEEEEeCC
Q 042119          123 LSENGVVQPKKVAFVGSGPMPLTSIIMAKHH---LT----------------------------------STHFDNFDID  165 (286)
Q Consensus       123 l~~~~~~~~~~VL~IG~G~lp~tai~lA~~~---~~----------------------------------g~~V~~iDid  165 (286)
                      +...+..++.+|+|.|||++.+ ++..|...   .|                                  ..+|+|+|+|
T Consensus       188 l~~~~~~~~~~vlDp~CGSGt~-lieaa~~~~~~apg~~R~f~f~~w~~~~~~~w~~~~~~a~~~~~~~~~~~V~GvDid  266 (385)
T 3ldu_A          188 IYLTPWKAGRVLVDPMCGSGTI-LIEAAMIGINMAPGLNREFISEKWRTLDKKIWWDVRKDAFNKIDNESKFKIYGYDID  266 (385)
T ss_dssp             HHTSCCCTTSCEEETTCTTCHH-HHHHHHHHTTCCTTTTSCCGGGGCTTSCHHHHHHHHHHHHHHSCCSCCCCEEEEESC
T ss_pred             HHhhCCCCCCeEEEcCCCCCHH-HHHHHHHHhhhCCCcccccchhhcccCCHHHHHHHHHHHHHHhhccCCceEEEEECC
Confidence            3345567889999999997544 44444421   11                                  2679999999


Q ss_pred             hHHHHHHHHHHHhcCCCCCCeEEEEccccchhhcCCCcceeehhhhccCC---hhHHHHHHHHHHhhccC--CcEEEEee
Q 042119          166 EAANDVARSIVASDAEFEGRMKFLTRDIMEVKEQLGEYDCIFLAALVGMS---KEEKLTILGHIRKYMKD--GGILLVRS  240 (286)
Q Consensus       166 ~~ai~~Ar~~~~~~g~l~~~i~f~~~D~~~~~~~l~~fD~V~~aalvg~~---~~~k~~vl~~l~~~l~p--gg~lv~r~  240 (286)
                      +.+++.|++++...| +.++|+|.++|+.+++.+ ..||+|+..---|..   .++..+++..+.+.+++  |+.+.+-+
T Consensus       267 ~~ai~~Ar~Na~~~g-l~~~i~~~~~D~~~l~~~-~~~D~Iv~NPPyg~rl~~~~~l~~ly~~lg~~lk~~~g~~~~iit  344 (385)
T 3ldu_A          267 EESIDIARENAEIAG-VDEYIEFNVGDATQFKSE-DEFGFIITNPPYGERLEDKDSVKQLYKELGYAFRKLKNWSYYLIT  344 (385)
T ss_dssp             HHHHHHHHHHHHHHT-CGGGEEEEECCGGGCCCS-CBSCEEEECCCCCCSHHHHHHHHHHHHHHHHHHHTSBSCEEEEEE
T ss_pred             HHHHHHHHHHHHHcC-CCCceEEEECChhhcCcC-CCCcEEEECCCCcCccCCHHHHHHHHHHHHHHHhhCCCCEEEEEE
Confidence            999999999999999 777899999999886653 479999874322211   23345567777777766  76655544

>1qam_A ERMC' methyltransferase; rRNA methyltransferase ERMC', cofactor analogs; 2.20A {Bacillus subtilis} SCOP: c.66.1.24 PDB: 1qan_A* 1qao_A* 1qaq_A* 2erc_A

Probab=98.70  E-value=1.1e-07  Score=84.45  Aligned_cols=67  Identities=13%  Similarity=0.263  Sum_probs=53.5

Q ss_pred             hcCCCCCCEEEEeccCCChhhHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEccccchhhc
Q 042119          125 ENGVVQPKKVAFVGSGPMPLTSIIMAKHHLTSTHFDNFDIDEAANDVARSIVASDAEFEGRMKFLTRDIMEVKEQ  199 (286)
Q Consensus       125 ~~~~~~~~~VL~IG~G~lp~tai~lA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~g~l~~~i~f~~~D~~~~~~~  199 (286)
                      ...+.++.+|||||||++.+ +..+++   .+.+|+++|+|+++++.+++.+...    ++++++++|+.+++..
T Consensus        25 ~~~~~~~~~VLDiG~G~G~l-t~~l~~---~~~~v~~vD~~~~~~~~a~~~~~~~----~~v~~~~~D~~~~~~~   91 (244)
T 1qam_A           25 NIRLNEHDNIFEIGSGKGHF-TLELVQ---RCNFVTAIEIDHKLCKTTENKLVDH----DNFQVLNKDILQFKFP   91 (244)
T ss_dssp             TCCCCTTCEEEEECCTTSHH-HHHHHH---HSSEEEEECSCHHHHHHHHHHTTTC----CSEEEECCCGGGCCCC
T ss_pred             hCCCCCCCEEEEEeCCchHH-HHHHHH---cCCeEEEEECCHHHHHHHHHhhccC----CCeEEEEChHHhCCcc
Confidence            44567889999999997554 566676   3589999999999999999986532    5799999999886543

>3c6k_A Spermine synthase; spermidine aminopropyltransferase, SPMSY, structural genomics, structural genomics consortium, SGC, phosphoprotein; HET: SPD MTA; 1.95A {Homo sapiens} PDB: 3c6m_A*

Probab=98.70  E-value=2.9e-08  Score=94.18  Aligned_cols=109  Identities=19%  Similarity=0.174  Sum_probs=80.2

Q ss_pred             CCCCEEEEeccCCChhhHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhc-----CC-CCCCeEEEEccccchhh----
Q 042119          129 VQPKKVAFVGSGPMPLTSIIMAKHHLTSTHFDNFDIDEAANDVARSIVASD-----AE-FEGRMKFLTRDIMEVKE----  198 (286)
Q Consensus       129 ~~~~~VL~IG~G~lp~tai~lA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~-----g~-l~~~i~f~~~D~~~~~~----  198 (286)
                      .++++||.||.|- |.++-.+.+  .+..+|+.+||||+.+++|++.+...     .. -.+|++++.+|+.+...    
T Consensus       204 ~~pkrVLIIGgGd-G~~~revlk--h~~~~V~~VEIDp~VVe~ar~yfp~~~~~~~d~pr~~rv~vii~Da~~fl~~~~~  280 (381)
T 3c6k_A          204 YTGKDVLILGGGD-GGILCEIVK--LKPKMVTMVEIDQMVIDGCKKYMRKTCGDVLDNLKGDCYQVLIEDCIPVLKRYAK  280 (381)
T ss_dssp             CTTCEEEEEECTT-CHHHHHHHT--TCCSEEEEEESCHHHHHHHHHHCCC----CCSSSEETTEEEEESCHHHHHHHHHH
T ss_pred             CCCCeEEEECCCc-HHHHHHHHh--cCCceeEEEccCHHHHHHHHhhchhhhhhhhccccccceeeehHHHHHHHHhhhh
Confidence            4679999999995 666666666  25689999999999999999985321     10 12579999999987654    


Q ss_pred             cCCCcceeehhhhc--------cCCh-hHHHHHHHHHHhhccCCcEEEEee
Q 042119          199 QLGEYDCIFLAALV--------GMSK-EEKLTILGHIRKYMKDGGILLVRS  240 (286)
Q Consensus       199 ~l~~fD~V~~aalv--------g~~~-~~k~~vl~~l~~~l~pgg~lv~r~  240 (286)
                      .-+.||+|+++..-        +... .=..++++.+.+.|+|||+++...
T Consensus       281 ~~~~yDvIIvDl~D~~~s~~p~g~a~~Lft~eFy~~~~~~L~p~GVlv~Q~  331 (381)
T 3c6k_A          281 EGREFDYVINDLTAVPISTSPEEDSTWEFLRLILDLSMKVLKQDGKYFTQG  331 (381)
T ss_dssp             HTCCEEEEEEECCSSCCCCC----CHHHHHHHHHHHHHHTEEEEEEEEEEE
T ss_pred             ccCceeEEEECCCCCcccCcccCcchHHHHHHHHHHHHHhcCCCCEEEEec
Confidence            23479999988531        1010 113578999999999999999875

>3tqs_A Ribosomal RNA small subunit methyltransferase A; protein synthesis; 1.98A {Coxiella burnetii} SCOP: c.66.1.0

Probab=98.69  E-value=5.2e-08  Score=87.67  Aligned_cols=66  Identities=8%  Similarity=0.082  Sum_probs=54.3

Q ss_pred             hcCCCCCCEEEEeccCCChhhHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEccccchhh
Q 042119          125 ENGVVQPKKVAFVGSGPMPLTSIIMAKHHLTSTHFDNFDIDEAANDVARSIVASDAEFEGRMKFLTRDIMEVKE  198 (286)
Q Consensus       125 ~~~~~~~~~VL~IG~G~lp~tai~lA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~g~l~~~i~f~~~D~~~~~~  198 (286)
                      ...+.++.+|||||||++. .+..+++   .+.+|+++|+|+++++.+++.+.. .   ++++++++|+.+++.
T Consensus        24 ~~~~~~~~~VLEIG~G~G~-lt~~La~---~~~~V~avEid~~~~~~~~~~~~~-~---~~v~~i~~D~~~~~~   89 (255)
T 3tqs_A           24 AIHPQKTDTLVEIGPGRGA-LTDYLLT---ECDNLALVEIDRDLVAFLQKKYNQ-Q---KNITIYQNDALQFDF   89 (255)
T ss_dssp             HHCCCTTCEEEEECCTTTT-THHHHTT---TSSEEEEEECCHHHHHHHHHHHTT-C---TTEEEEESCTTTCCG
T ss_pred             hcCCCCcCEEEEEcccccH-HHHHHHH---hCCEEEEEECCHHHHHHHHHHHhh-C---CCcEEEEcchHhCCH
Confidence            4467788999999999755 4566776   468999999999999999998765 2   589999999988654

>1yub_A Ermam, rRNA methyltransferase; MLS antibiotics; NMR {Streptococcus pneumoniae} SCOP: c.66.1.24

Probab=98.64  E-value=1.2e-09  Score=96.72  Aligned_cols=106  Identities=17%  Similarity=0.199  Sum_probs=70.1

Q ss_pred             hcCCCCCCEEEEeccCCChhhHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEccccchhhcC-CCc
Q 042119          125 ENGVVQPKKVAFVGSGPMPLTSIIMAKHHLTSTHFDNFDIDEAANDVARSIVASDAEFEGRMKFLTRDIMEVKEQL-GEY  203 (286)
Q Consensus       125 ~~~~~~~~~VL~IG~G~lp~tai~lA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~g~l~~~i~f~~~D~~~~~~~l-~~f  203 (286)
                      .....++.+|||||||++.+| ..+++   .+.+|+|+|+|+++++.|++.++  +  .++++++++|+.+++... +.|
T Consensus        24 ~~~~~~~~~VLDiG~G~G~~~-~~l~~---~~~~v~~id~~~~~~~~a~~~~~--~--~~~v~~~~~D~~~~~~~~~~~f   95 (245)
T 1yub_A           24 QLNLKETDTVYEIGTGKGHLT-TKLAK---ISKQVTSIELDSHLFNLSSEKLK--L--NTRVTLIHQDILQFQFPNKQRY   95 (245)
T ss_dssp             HCCCCSSEEEEECSCCCSSCS-HHHHH---HSSEEEESSSSCSSSSSSSCTTT--T--CSEEEECCSCCTTTTCCCSSEE
T ss_pred             hcCCCCCCEEEEEeCCCCHHH-HHHHH---hCCeEEEEECCHHHHHHHHHHhc--c--CCceEEEECChhhcCcccCCCc
Confidence            345678899999999986655 56666   35899999999999999988755  2  268999999998866432 357


Q ss_pred             ceeehhhhccCChhHHH----------HHH----HHHHhhccCCcEEEEe
Q 042119          204 DCIFLAALVGMSKEEKL----------TIL----GHIRKYMKDGGILLVR  239 (286)
Q Consensus       204 D~V~~aalvg~~~~~k~----------~vl----~~l~~~l~pgg~lv~r  239 (286)
                       .|+..---....+.-.          .++    +.+.+.|+|||.+.+.
T Consensus        96 -~vv~n~Py~~~~~~~~~~~~~~~~~~~~lm~q~e~a~rll~~~G~l~v~  144 (245)
T 1yub_A           96 -KIVGNIPYHLSTQIIKKVVFESRASDIYLIVEEGFYKRTLDIHRTLGLL  144 (245)
T ss_dssp             -EEEEECCSSSCHHHHHHHHHHCCCEEEEEEEESSHHHHHHCGGGSHHHH
T ss_pred             -EEEEeCCccccHHHHHHHHhCCCCCeEEEEeeHHHHHHHhCCCCchhhh
Confidence             3332100000001111          222    5577888888876554

>2ih2_A Modification methylase TAQI; DNA, DNA methyltransferase, target base partner, 5-methylpyr 2(1H)-ONE, base flipping; HET: 5PY 6MA NEA; 1.61A {Thermus aquaticus} SCOP: c.66.1.27 d.287.1.1 PDB: 2ibs_A* 2ibt_A* 2ih4_A* 2ih5_A* 2jg3_A* 2np6_A* 2np7_A* 1aqj_A* 1aqi_A* 2adm_A* 1g38_A*

Probab=98.62  E-value=5.2e-08  Score=92.01  Aligned_cols=101  Identities=20%  Similarity=0.182  Sum_probs=72.9

Q ss_pred             CCCCEEEEeccCCChhhHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEccccchhhcCCCcceeeh
Q 042119          129 VQPKKVAFVGSGPMPLTSIIMAKHHLTSTHFDNFDIDEAANDVARSIVASDAEFEGRMKFLTRDIMEVKEQLGEYDCIFL  208 (286)
Q Consensus       129 ~~~~~VL~IG~G~lp~tai~lA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~g~l~~~i~f~~~D~~~~~~~l~~fD~V~~  208 (286)
                      .++.+|||+|||++++ ++.++++..++.+|+|+|+|+++++.|           .+++++++|..+... .+.||+|+.
T Consensus        38 ~~~~~vLD~gcGtG~~-~~~~~~~~~~~~~i~gvDi~~~~~~~a-----------~~~~~~~~D~~~~~~-~~~fD~Ii~  104 (421)
T 2ih2_A           38 PRGGRVLEPACAHGPF-LRAFREAHGTAYRFVGVEIDPKALDLP-----------PWAEGILADFLLWEP-GEAFDLILG  104 (421)
T ss_dssp             CTTCEEEEETCTTCHH-HHHHHHHHCSCSEEEEEESCTTTCCCC-----------TTEEEEESCGGGCCC-SSCEEEEEE
T ss_pred             CCCCEEEECCCCChHH-HHHHHHHhCCCCeEEEEECCHHHHHhC-----------CCCcEEeCChhhcCc-cCCCCEEEE
Confidence            4567999999998555 455665322678999999999998776           368999999976543 247999986


Q ss_pred             hhh-c--c--------CChhHH-----------------HHHHHHHHhhccCCcEEEEeecC
Q 042119          209 AAL-V--G--------MSKEEK-----------------LTILGHIRKYMKDGGILLVRSAK  242 (286)
Q Consensus       209 aal-v--g--------~~~~~k-----------------~~vl~~l~~~l~pgg~lv~r~~~  242 (286)
                      .-- .  +        +..+.+                 ..+++++.+.|+|||.+++-...
T Consensus       105 NPPy~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fl~~~~~~Lk~~G~~~~i~p~  166 (421)
T 2ih2_A          105 NPPYGIVGEASKYPIHVFKAVKDLYKKAFSTWKGKYNLYGAFLEKAVRLLKPGGVLVFVVPA  166 (421)
T ss_dssp             CCCCCCBSCTTTCSBCCCHHHHHHHHHHCTTCCTTCCHHHHHHHHHHHHEEEEEEEEEEEEG
T ss_pred             CcCccCcccccccccccCHHHHHHHHHhhhcccCCccHHHHHHHHHHHHhCCCCEEEEEECh
Confidence            310 0  0        112222                 26799999999999998887644

>3fut_A Dimethyladenosine transferase; methyltransferase, dimethyltransferase, dual-specific methyltransferase, 16S rRNA methyltransferase; 1.52A {Thermus thermophilus} PDB: 3fuu_A* 3fuv_A 3fuw_A* 3fux_A*

Probab=98.62  E-value=1.6e-07  Score=85.24  Aligned_cols=75  Identities=12%  Similarity=0.065  Sum_probs=58.0

Q ss_pred             HhcCCCCCCEEEEeccCCChhhHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEccccchhhcC-CC
Q 042119          124 SENGVVQPKKVAFVGSGPMPLTSIIMAKHHLTSTHFDNFDIDEAANDVARSIVASDAEFEGRMKFLTRDIMEVKEQL-GE  202 (286)
Q Consensus       124 ~~~~~~~~~~VL~IG~G~lp~tai~lA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~g~l~~~i~f~~~D~~~~~~~l-~~  202 (286)
                      ...++.++ +|||||||++.+| ..+++   .+.+|+++|+|+++++.+++.+.  +   .+++++++|+.+++.+. ..
T Consensus        41 ~~~~~~~~-~VLEIG~G~G~lt-~~L~~---~~~~V~avEid~~~~~~l~~~~~--~---~~v~vi~~D~l~~~~~~~~~  110 (271)
T 3fut_A           41 EAARPFTG-PVFEVGPGLGALT-RALLE---AGAEVTAIEKDLRLRPVLEETLS--G---LPVRLVFQDALLYPWEEVPQ  110 (271)
T ss_dssp             HHHCCCCS-CEEEECCTTSHHH-HHHHH---TTCCEEEEESCGGGHHHHHHHTT--T---SSEEEEESCGGGSCGGGSCT
T ss_pred             HhcCCCCC-eEEEEeCchHHHH-HHHHH---cCCEEEEEECCHHHHHHHHHhcC--C---CCEEEEECChhhCChhhccC
Confidence            34466778 9999999976555 56676   46899999999999999999754  2   57999999998765432 25


Q ss_pred             cceeeh
Q 042119          203 YDCIFL  208 (286)
Q Consensus       203 fD~V~~  208 (286)
                      ||.|+.
T Consensus       111 ~~~iv~  116 (271)
T 3fut_A          111 GSLLVA  116 (271)
T ss_dssp             TEEEEE
T ss_pred             ccEEEe
Confidence            787663

>2okc_A Type I restriction enzyme stysji M protein; NP_813429.1, N-6 DNA methylase, type I restriction enzyme ST protein; HET: SAM; 2.20A {Bacteroides thetaiotaomicron vpi-5482} SCOP: c.66.1.45

Probab=98.56  E-value=7.1e-08  Score=92.91  Aligned_cols=114  Identities=15%  Similarity=0.112  Sum_probs=81.6

Q ss_pred             CCCCCCEEEEeccCCChhhHHHHHhhc------------CCCcEEEEEeCChHHHHHHHHHHHhcCCCCC-CeEEEEccc
Q 042119          127 GVVQPKKVAFVGSGPMPLTSIIMAKHH------------LTSTHFDNFDIDEAANDVARSIVASDAEFEG-RMKFLTRDI  193 (286)
Q Consensus       127 ~~~~~~~VL~IG~G~lp~tai~lA~~~------------~~g~~V~~iDid~~ai~~Ar~~~~~~g~l~~-~i~f~~~D~  193 (286)
                      .+.++.+|+|.|||++++. +.++++.            ..+.+++|+|+|+.+++.|+..+...| +.. ++++.++|.
T Consensus       168 ~~~~~~~VlDpacGsG~fl-~~~~~~l~~~~~~~~~~~~~~~~~i~G~Ei~~~~~~lA~~nl~l~g-~~~~~~~i~~gD~  245 (445)
T 2okc_A          168 NPQMGETVCDPACGTGGFL-LTAYDYMKGQSASKEKRDFLRDKALHGVDNTPLVVTLASMNLYLHG-IGTDRSPIVCEDS  245 (445)
T ss_dssp             CCCTTCCEEETTCTTCHHH-HHHHHHHHTCC-CCHHHHHHHHTTEEEEESCHHHHHHHHHHHHHTT-CCSSCCSEEECCT
T ss_pred             CCCCCCEEeccCCCcchHH-HHHHHHHHHhcCCHHHHHhhcCeEEEEEeCCHHHHHHHHHHHHHhC-CCcCCCCEeeCCC
Confidence            4567789999999987765 4444421            135789999999999999999988778 442 788999998


Q ss_pred             cchhhcCCCcceeehhhhc-cCChh---------------HHHHHHHHHHhhccCCcEEEEeecCc
Q 042119          194 MEVKEQLGEYDCIFLAALV-GMSKE---------------EKLTILGHIRKYMKDGGILLVRSAKG  243 (286)
Q Consensus       194 ~~~~~~l~~fD~V~~aalv-g~~~~---------------~k~~vl~~l~~~l~pgg~lv~r~~~g  243 (286)
                      ...+.. ..||+|+..--. +....               .-..+++++.+.|+|||++++-.++|
T Consensus       246 l~~~~~-~~fD~Iv~NPPf~~~~~~~~~~~~~~~~~~~~~~~~~fl~~~~~~Lk~gG~~a~V~p~~  310 (445)
T 2okc_A          246 LEKEPS-TLVDVILANPPFGTRPAGSVDINRPDFYVETKNNQLNFLQHMMLMLKTGGRAAVVLPDN  310 (445)
T ss_dssp             TTSCCS-SCEEEEEECCCSSCCCTTCCCCCCTTSSSCCSCHHHHHHHHHHHHEEEEEEEEEEEEHH
T ss_pred             CCCccc-CCcCEEEECCCCCCcccccchhhHhhcCCCCcchHHHHHHHHHHHhccCCEEEEEECCc
Confidence            664432 379999854211 11000               11478999999999999988766443

>2oyr_A UPF0341 protein YHIQ; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAH; 2.00A {Shigella flexneri 2A} SCOP: c.66.1.55 PDB: 2pgx_A 2pkw_A

Probab=98.52  E-value=8.9e-08  Score=86.43  Aligned_cols=81  Identities=9%  Similarity=0.215  Sum_probs=63.0

Q ss_pred             CCCCC--CEEEEeccCCChhhHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCC-------CCCCeEEEEccccchh
Q 042119          127 GVVQP--KKVAFVGSGPMPLTSIIMAKHHLTSTHFDNFDIDEAANDVARSIVASDAE-------FEGRMKFLTRDIMEVK  197 (286)
Q Consensus       127 ~~~~~--~~VL~IG~G~lp~tai~lA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~g~-------l~~~i~f~~~D~~~~~  197 (286)
                      +..++  .+|||+||| .|..++.+|+   .|++|++||+++.+.+++++.++..+.       +.++|+++++|+.+..
T Consensus        83 ~l~~g~~~~VLDl~~G-~G~dal~lA~---~g~~V~~vE~~~~~~~l~~~~l~~a~~~~~~~~~l~~~i~~~~~D~~~~L  158 (258)
T 2oyr_A           83 GIKGDYLPDVVDATAG-LGRDAFVLAS---VGCRVRMLERNPVVAALLDDGLARGYADAEIGGWLQERLQLIHASSLTAL  158 (258)
T ss_dssp             TCBTTBCCCEEETTCT-TCHHHHHHHH---HTCCEEEEECCHHHHHHHHHHHHHHHHCTTTHHHHHHHEEEEESCHHHHS
T ss_pred             cccCCCCCEEEEcCCc-CCHHHHHHHH---cCCEEEEEECCHHHHHHHHHHHHHHHhhHhhhhhhhcCEEEEECCHHHHH
Confidence            34566  899999999 5888899998   478999999999988888877654320       1257999999998865


Q ss_pred             hcC-CCcceeehhhh
Q 042119          198 EQL-GEYDCIFLAAL  211 (286)
Q Consensus       198 ~~l-~~fD~V~~aal  211 (286)
                      ..+ +.||+||++-.
T Consensus       159 ~~~~~~fDvV~lDP~  173 (258)
T 2oyr_A          159 TDITPRPQVVYLDPM  173 (258)
T ss_dssp             TTCSSCCSEEEECCC
T ss_pred             HhCcccCCEEEEcCC
Confidence            543 36999998753

>3ua3_A Protein arginine N-methyltransferase 5; TIM-barrel, rossmann fold, beta-barrel, symmetric arginine dimethylase, SAM binding; HET: SAH; 3.00A {Caenorhabditis elegans} PDB: 3ua4_A

Probab=98.44  E-value=7.6e-07  Score=90.26  Aligned_cols=104  Identities=14%  Similarity=0.224  Sum_probs=76.1

Q ss_pred             CCEEEEeccCCChhhHHHH--HhhcC---------CCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEccccchhhc
Q 042119          131 PKKVAFVGSGPMPLTSIIM--AKHHL---------TSTHFDNFDIDEAANDVARSIVASDAEFEGRMKFLTRDIMEVKEQ  199 (286)
Q Consensus       131 ~~~VL~IG~G~lp~tai~l--A~~~~---------~g~~V~~iDid~~ai~~Ar~~~~~~g~l~~~i~f~~~D~~~~~~~  199 (286)
                      ++.|++||||.+|++...+  ++.+.         ...+|.+||.++.|+...++... .| ++++|+++.+|+.++..+
T Consensus       410 ~~VVldVGaGtGpLs~~al~A~~~a~~~~~~~~~~~~~kVyAVEknp~A~~~l~~~~~-Ng-~~d~VtVI~gd~eev~lp  487 (745)
T 3ua3_A          410 TVVIYLLGGGRGPIGTKILKSEREYNNTFRQGQESLKVKLYIVEKNPNAIVTLKYMNV-RT-WKRRVTIIESDMRSLPGI  487 (745)
T ss_dssp             EEEEEEESCTTCHHHHHHHHHHHHHHHHHSTTSCCCEEEEEEEECCHHHHHHHHHHHH-HT-TTTCSEEEESCGGGHHHH
T ss_pred             CcEEEEECCCCCHHHHHHHHHHHHhCccccccccccccEEEEEeCChHHHHHHHHHHh-cC-CCCeEEEEeCchhhcccc
Confidence            4689999999999984332  22111         23599999999988876666554 77 789999999999988653


Q ss_pred             -----CCCcceeehhhhccC--ChhHHHHHHHHHHhhccCCcEEE
Q 042119          200 -----LGEYDCIFLAALVGM--SKEEKLTILGHIRKYMKDGGILL  237 (286)
Q Consensus       200 -----l~~fD~V~~aalvg~--~~~~k~~vl~~l~~~l~pgg~lv  237 (286)
                           ....|+|+-. +.|.  +-|--.+.|..+.+.|||||+++
T Consensus       488 ~~~~~~ekVDIIVSE-lmGsfl~nEL~pe~Ld~v~r~Lkp~Gi~i  531 (745)
T 3ua3_A          488 AKDRGFEQPDIIVSE-LLGSFGDNELSPECLDGVTGFLKPTTISI  531 (745)
T ss_dssp             HHHTTCCCCSEEEEC-CCBTTBGGGSHHHHHHTTGGGSCTTCEEE
T ss_pred             cccCCCCcccEEEEe-ccccccchhccHHHHHHHHHhCCCCcEEE
Confidence                 4679998733 3332  22444578899999999999875

>3ftd_A Dimethyladenosine transferase; KSGA, rossmann-like fold, RNA methyltransferase, mtase, anti resistance, methyltransferase, RNA-binding; 1.44A {Aquifex aeolicus} PDB: 3ftc_A 3fte_A 3ftf_A* 3r9x_B*

Probab=98.43  E-value=7.5e-07  Score=79.64  Aligned_cols=103  Identities=15%  Similarity=0.198  Sum_probs=67.4

Q ss_pred             HhcCCCCCCEEEEeccCCChhhHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEccccchhhcC-CC
Q 042119          124 SENGVVQPKKVAFVGSGPMPLTSIIMAKHHLTSTHFDNFDIDEAANDVARSIVASDAEFEGRMKFLTRDIMEVKEQL-GE  202 (286)
Q Consensus       124 ~~~~~~~~~~VL~IG~G~lp~tai~lA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~g~l~~~i~f~~~D~~~~~~~l-~~  202 (286)
                      ....+.++.+|||||||+ |..+..++++  +..+|+++|+|+.+++.+++.    +  ..+++++++|+.+++.+. .+
T Consensus        25 ~~~~~~~~~~VLDiG~G~-G~lt~~L~~~--~~~~v~avEid~~~~~~~~~~----~--~~~v~~i~~D~~~~~~~~~~~   95 (249)
T 3ftd_A           25 EELNIEEGNTVVEVGGGT-GNLTKVLLQH--PLKKLYVIELDREMVENLKSI----G--DERLEVINEDASKFPFCSLGK   95 (249)
T ss_dssp             HHTTCCTTCEEEEEESCH-HHHHHHHTTS--CCSEEEEECCCHHHHHHHTTS----C--CTTEEEECSCTTTCCGGGSCS
T ss_pred             HhcCCCCcCEEEEEcCch-HHHHHHHHHc--CCCeEEEEECCHHHHHHHHhc----c--CCCeEEEEcchhhCChhHccC
Confidence            344667889999999996 5556677762  358999999999999999987    2  158999999998765432 11


Q ss_pred             cceeehhhhccCChhHHHHHHHHHHhhc--cCCcEEEEe
Q 042119          203 YDCIFLAALVGMSKEEKLTILGHIRKYM--KDGGILLVR  239 (286)
Q Consensus       203 fD~V~~aalvg~~~~~k~~vl~~l~~~l--~pgg~lv~r  239 (286)
                       ++++++.+ ...  .-..++.++.+..  -+.+++++.
T Consensus        96 -~~~vv~Nl-Py~--i~~~il~~ll~~~~~~~~~~~m~Q  130 (249)
T 3ftd_A           96 -ELKVVGNL-PYN--VASLIIENTVYNKDCVPLAVFMVQ  130 (249)
T ss_dssp             -SEEEEEEC-CTT--THHHHHHHHHHTGGGCSEEEEEEE
T ss_pred             -CcEEEEEC-chh--ccHHHHHHHHhcCCCCceEEEEEe
Confidence             33343433 111  2234555555543  244555554

>3v97_A Ribosomal RNA large subunit methyltransferase L; YCBY, RNA methyltransferase, ribosome RNA, SAH, RLML; HET: SAH OSU; 2.20A {Escherichia coli} PDB: 3v8v_A*

Probab=98.43  E-value=1.2e-06  Score=89.42  Aligned_cols=116  Identities=22%  Similarity=0.210  Sum_probs=79.3

Q ss_pred             HHhcCCCCCCEEEEeccCCChhhHHHHHhhc---C--------------------------------------CCcEEEE
Q 042119          123 LSENGVVQPKKVAFVGSGPMPLTSIIMAKHH---L--------------------------------------TSTHFDN  161 (286)
Q Consensus       123 l~~~~~~~~~~VL~IG~G~lp~tai~lA~~~---~--------------------------------------~g~~V~~  161 (286)
                      +...+..++.+|+|.+||++.+ ++..|...   .                                      +..+|+|
T Consensus       183 l~~~~~~~~~~llDP~CGSGt~-lIeAa~~a~~~apG~~R~~f~fe~w~~~~~~~w~~~~~ea~~~~~~~~~~~~~~i~G  261 (703)
T 3v97_A          183 VMRSGWQPGTPLLDPMCGSGTL-LIEAAMLATDRAPGLHRGRWGFSGWAQHDEAIWQEVKAEAQTRARKGLAEYSSHFYG  261 (703)
T ss_dssp             HHHTTCCTTSCEEETTCTTSHH-HHHHHHHHTTCCTTTTCCCCTTTTBTTCCHHHHHHHHHHHHHHHHHHHHHCCCCEEE
T ss_pred             HHhhCCCCCCeEEecCCCCcHH-HHHHHHHHhhcCCCCCccccchhhcccCCHHHHHHHHHHHHHHhhhccccCCccEEE
Confidence            3344567889999999997554 34443311   1                                      2368999


Q ss_pred             EeCChHHHHHHHHHHHhcCCCCCCeEEEEccccchhhcC--CCcceeehhhhccC---ChhHHHHH---HHHHHhhccCC
Q 042119          162 FDIDEAANDVARSIVASDAEFEGRMKFLTRDIMEVKEQL--GEYDCIFLAALVGM---SKEEKLTI---LGHIRKYMKDG  233 (286)
Q Consensus       162 iDid~~ai~~Ar~~~~~~g~l~~~i~f~~~D~~~~~~~l--~~fD~V~~aalvg~---~~~~k~~v---l~~l~~~l~pg  233 (286)
                      +|+|+.|++.|++++...| +.+.|+|.++|+.++..+.  +.||+|+..---|.   ..+.-..+   +.++.+.+.||
T Consensus       262 ~Did~~av~~A~~N~~~ag-v~~~i~~~~~D~~~~~~~~~~~~~d~Iv~NPPYG~Rlg~~~~l~~ly~~l~~~lk~~~~g  340 (703)
T 3v97_A          262 SDSDARVIQRARTNARLAG-IGELITFEVKDVAQLTNPLPKGPYGTVLSNPPYGERLDSEPALIALHSLLGRIMKNQFGG  340 (703)
T ss_dssp             EESCHHHHHHHHHHHHHTT-CGGGEEEEECCGGGCCCSCTTCCCCEEEECCCCCC---CCHHHHHHHHHHHHHHHHHCTT
T ss_pred             EECCHHHHHHHHHHHHHcC-CCCceEEEECChhhCccccccCCCCEEEeCCCccccccchhHHHHHHHHHHHHHHhhCCC
Confidence            9999999999999999999 7888999999998864433  27999986521121   11222233   44445555689


Q ss_pred             cEEEEee
Q 042119          234 GILLVRS  240 (286)
Q Consensus       234 g~lv~r~  240 (286)
                      |.+.+-+
T Consensus       341 ~~~~ilt  347 (703)
T 3v97_A          341 WNLSLFS  347 (703)
T ss_dssp             CEEEEEE
T ss_pred             CeEEEEe
Confidence            9877743

>4fzv_A Putative methyltransferase NSUN4; mterf fold, methyltransferase fold, rRNA methyltransferase, mitochondria, transferase; HET: MSE SAM; 2.00A {Homo sapiens} PDB: 4fp9_A*

Probab=98.39  E-value=1.2e-06  Score=82.61  Aligned_cols=112  Identities=14%  Similarity=0.098  Sum_probs=86.8

Q ss_pred             CCCCCCEEEEeccCCChhhHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCC----CCCCeEEEEccccchhhcC-C
Q 042119          127 GVVQPKKVAFVGSGPMPLTSIIMAKHHLTSTHFDNFDIDEAANDVARSIVASDAE----FEGRMKFLTRDIMEVKEQL-G  201 (286)
Q Consensus       127 ~~~~~~~VL~IG~G~lp~tai~lA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~g~----l~~~i~f~~~D~~~~~~~l-~  201 (286)
                      .+.++.+|||.-+||+|=|+. +|. ...+..|+++|+|+..++..++++++.|.    ...++.+.+.|+..+.... +
T Consensus       145 ~~~pg~~VLD~CAaPGGKT~~-la~-~~~~~~l~A~D~~~~R~~~l~~~l~r~~~~~~~~~~~v~v~~~D~~~~~~~~~~  222 (359)
T 4fzv_A          145 GLQPGDIVLDLCAAPGGKTLA-LLQ-TGCCRNLAANDLSPSRIARLQKILHSYVPEEIRDGNQVRVTSWDGRKWGELEGD  222 (359)
T ss_dssp             CCCTTEEEEESSCTTCHHHHH-HHH-TTCEEEEEEECSCHHHHHHHHHHHHHHSCTTTTTSSSEEEECCCGGGHHHHSTT
T ss_pred             CCCCCCEEEEecCCccHHHHH-HHH-hcCCCcEEEEcCCHHHHHHHHHHHHHhhhhhhccCCceEEEeCchhhcchhccc
Confidence            678999999999999988865 454 35677899999999999999999998872    1257899999998765433 4


Q ss_pred             Ccceeehhhh-----ccC---C--------h-------hHHHHHHHHHHhhccCCcEEEEee
Q 042119          202 EYDCIFLAAL-----VGM---S--------K-------EEKLTILGHIRKYMKDGGILLVRS  240 (286)
Q Consensus       202 ~fD~V~~aal-----vg~---~--------~-------~~k~~vl~~l~~~l~pgg~lv~r~  240 (286)
                      .||.|++++-     +|.   +        .       .--.++|++..+.+||||+||+.+
T Consensus       223 ~fD~VLlDaPCSg~g~g~~r~~~~~~~~~~~~~~~~l~~lQ~~iL~~a~~~lkpGG~LVYsT  284 (359)
T 4fzv_A          223 TYDRVLVDVPCTTDRHSLHEEENNIFKRSRKKERQILPVLQVQLLAAGLLATKPGGHVVYST  284 (359)
T ss_dssp             CEEEEEEECCCCCHHHHTTCCTTCTTSGGGHHHHHTHHHHHHHHHHHHHHTEEEEEEEEEEE
T ss_pred             cCCEEEECCccCCCCCcccccChhhhhhCCHHHHHHHHHHHHHHHHHHHhcCCCCcEEEEEe
Confidence            7999998752     111   0        0       012468999999999999999975

>4gqb_A Protein arginine N-methyltransferase 5; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens} PDB: 4g56_A*

Probab=98.38  E-value=1.1e-06  Score=88.55  Aligned_cols=102  Identities=14%  Similarity=0.191  Sum_probs=75.6

Q ss_pred             CCCEEEEeccCCChhhHHHHHhh--cCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEccccchhhcCCCcceee
Q 042119          130 QPKKVAFVGSGPMPLTSIIMAKH--HLTSTHFDNFDIDEAANDVARSIVASDAEFEGRMKFLTRDIMEVKEQLGEYDCIF  207 (286)
Q Consensus       130 ~~~~VL~IG~G~lp~tai~lA~~--~~~g~~V~~iDid~~ai~~Ar~~~~~~g~l~~~i~f~~~D~~~~~~~l~~fD~V~  207 (286)
                      .+..|++||||.+|++...+...  .....+|.+||.+| +...|++++++.| ++++|+++.||+.++..+ .+.|+|+
T Consensus       357 ~~~vVldVGaGrGpLv~~al~A~a~~~~~vkVyAVEknp-~A~~a~~~v~~N~-~~dkVtVI~gd~eev~LP-EKVDIIV  433 (637)
T 4gqb_A          357 NVQVLMVLGAGRGPLVNASLRAAKQADRRIKLYAVEKNP-NAVVTLENWQFEE-WGSQVTVVSSDMREWVAP-EKADIIV  433 (637)
T ss_dssp             CEEEEEEESCTTSHHHHHHHHHHHHTTCEEEEEEEESCH-HHHHHHHHHHHHT-TGGGEEEEESCTTTCCCS-SCEEEEE
T ss_pred             CCcEEEEECCCCcHHHHHHHHHHHhcCCCcEEEEEECCH-HHHHHHHHHHhcc-CCCeEEEEeCcceeccCC-cccCEEE
Confidence            44679999999999854444321  12234789999997 5668999999999 899999999999886544 4799986


Q ss_pred             hh---hh-ccCChhHHHHHHHHHHhhccCCcEEE
Q 042119          208 LA---AL-VGMSKEEKLTILGHIRKYMKDGGILL  237 (286)
Q Consensus       208 ~a---al-vg~~~~~k~~vl~~l~~~l~pgg~lv  237 (286)
                      -.   .+ .+   |.-.+++....|.|||||+++
T Consensus       434 SEwMG~fLl~---E~mlevL~Ardr~LKPgGimi  464 (637)
T 4gqb_A          434 SELLGSFADN---ELSPECLDGAQHFLKDDGVSI  464 (637)
T ss_dssp             CCCCBTTBGG---GCHHHHHHHHGGGEEEEEEEE
T ss_pred             EEcCcccccc---cCCHHHHHHHHHhcCCCcEEc
Confidence            32   22 22   222368888999999999874

>1qyr_A KSGA, high level kasugamycin resistance protein, S-adenosylMet; adenosine dimethyltransferase, rRNA modification, transferase, translation; 2.10A {Escherichia coli} SCOP: c.66.1.24 PDB: 4adv_V 3tpz_A

Probab=98.36  E-value=3.7e-07  Score=81.90  Aligned_cols=65  Identities=11%  Similarity=0.119  Sum_probs=50.6

Q ss_pred             hcCCCCCCEEEEeccCCChhhHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEccccchh
Q 042119          125 ENGVVQPKKVAFVGSGPMPLTSIIMAKHHLTSTHFDNFDIDEAANDVARSIVASDAEFEGRMKFLTRDIMEVK  197 (286)
Q Consensus       125 ~~~~~~~~~VL~IG~G~lp~tai~lA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~g~l~~~i~f~~~D~~~~~  197 (286)
                      ...+.++.+|||||||++.+|.  +++  ....+|+++|+|+++++.+++.+...    ++++++++|+.+++
T Consensus        16 ~~~~~~~~~VLEIG~G~G~lt~--l~~--~~~~~v~avEid~~~~~~a~~~~~~~----~~v~~i~~D~~~~~   80 (252)
T 1qyr_A           16 AINPQKGQAMVEIGPGLAALTE--PVG--ERLDQLTVIELDRDLAARLQTHPFLG----PKLTIYQQDAMTFN   80 (252)
T ss_dssp             HHCCCTTCCEEEECCTTTTTHH--HHH--TTCSCEEEECCCHHHHHHHHTCTTTG----GGEEEECSCGGGCC
T ss_pred             hcCCCCcCEEEEECCCCcHHHH--hhh--CCCCeEEEEECCHHHHHHHHHHhccC----CceEEEECchhhCC
Confidence            3356788999999999877776  554  22233999999999999999875432    47999999998754

>3uzu_A Ribosomal RNA small subunit methyltransferase A; ssgcid, seattle structural genomics center for infectio disease; 1.75A {Burkholderia pseudomallei}

Probab=98.35  E-value=7.5e-07  Score=81.10  Aligned_cols=68  Identities=10%  Similarity=0.077  Sum_probs=52.1

Q ss_pred             HhcCCCCCCEEEEeccCCChhhHHHHHhhcCC-CcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEccccchhh
Q 042119          124 SENGVVQPKKVAFVGSGPMPLTSIIMAKHHLT-STHFDNFDIDEAANDVARSIVASDAEFEGRMKFLTRDIMEVKE  198 (286)
Q Consensus       124 ~~~~~~~~~~VL~IG~G~lp~tai~lA~~~~~-g~~V~~iDid~~ai~~Ar~~~~~~g~l~~~i~f~~~D~~~~~~  198 (286)
                      ....+.++.+|||||||++.+| ..++++... +++|+++|+|+++++.+++..   .   .+++++++|+.+++.
T Consensus        36 ~~~~~~~~~~VLEIG~G~G~lt-~~La~~~~~~~~~V~avDid~~~l~~a~~~~---~---~~v~~i~~D~~~~~~  104 (279)
T 3uzu_A           36 AAIRPERGERMVEIGPGLGALT-GPVIARLATPGSPLHAVELDRDLIGRLEQRF---G---ELLELHAGDALTFDF  104 (279)
T ss_dssp             HHHCCCTTCEEEEECCTTSTTH-HHHHHHHCBTTBCEEEEECCHHHHHHHHHHH---G---GGEEEEESCGGGCCG
T ss_pred             HhcCCCCcCEEEEEccccHHHH-HHHHHhCCCcCCeEEEEECCHHHHHHHHHhc---C---CCcEEEECChhcCCh
Confidence            3446678899999999986665 555652222 245999999999999999983   3   479999999987654

>2ar0_A M.ecoki, type I restriction enzyme ecoki M protein; structural genomics, protein structure initiative, nysgxrc; 2.80A {Escherichia coli} SCOP: c.66.1.45 PDB: 2y7c_B 2y7h_B*

Probab=98.21  E-value=3.1e-06  Score=83.72  Aligned_cols=115  Identities=13%  Similarity=0.103  Sum_probs=80.9

Q ss_pred             CCCCCCEEEEeccCCChhhHHHHHhhc---C--------------CCcEEEEEeCChHHHHHHHHHHHhcCCCCC----C
Q 042119          127 GVVQPKKVAFVGSGPMPLTSIIMAKHH---L--------------TSTHFDNFDIDEAANDVARSIVASDAEFEG----R  185 (286)
Q Consensus       127 ~~~~~~~VL~IG~G~lp~tai~lA~~~---~--------------~g~~V~~iDid~~ai~~Ar~~~~~~g~l~~----~  185 (286)
                      .+.++.+|+|.|||++++.... +++.   .              ...+++|+|+|+.+++.|+..+...| ...    +
T Consensus       166 ~p~~~~~VlDPaCGSG~fLi~a-~~~l~~~~~~~~~~~~~~~~~~~~~~i~GiEid~~~~~lA~~nl~l~g-i~~~~~~~  243 (541)
T 2ar0_A          166 KPQPREVVQDPAAGTAGFLIEA-DRYVKSQTNDLDDLDGDTQDFQIHRAFIGLELVPGTRRLALMNCLLHD-IEGNLDHG  243 (541)
T ss_dssp             CCCTTCCEEETTCTTTHHHHHH-HHHHHTTTTTTTTSCHHHHHHHHHTSEEEEESCHHHHHHHHHHHHTTT-CCCBGGGT
T ss_pred             ccCCCCeEecCCcccchHHHHH-HHHHHHhhcccccCCHHHHhhhhcceEEEEcCCHHHHHHHHHHHHHhC-CCcccccc
Confidence            4567789999999988775433 3311   1              12479999999999999999888777 443    2


Q ss_pred             eEEEEccccchh-hcCCCcceeehhhhccCC-------------hhHHHHHHHHHHhhccCCcEEEEeecCc
Q 042119          186 MKFLTRDIMEVK-EQLGEYDCIFLAALVGMS-------------KEEKLTILGHIRKYMKDGGILLVRSAKG  243 (286)
Q Consensus       186 i~f~~~D~~~~~-~~l~~fD~V~~aalvg~~-------------~~~k~~vl~~l~~~l~pgg~lv~r~~~g  243 (286)
                      +++.++|....+ .....||+|+..--.+..             ......+++++.+.|+|||++++-.++|
T Consensus       244 ~~I~~gDtL~~~~~~~~~fD~Vv~NPPf~~~~~~~~~~~~~~~~~~~~~~Fl~~~l~~Lk~gGr~a~V~p~~  315 (541)
T 2ar0_A          244 GAIRLGNTLGSDGENLPKAHIVATNPPFGSAAGTNITRTFVHPTSNKQLCFMQHIIETLHPGGRAAVVVPDN  315 (541)
T ss_dssp             BSEEESCTTSHHHHTSCCEEEEEECCCCTTCSSCCCCSCCSSCCSCHHHHHHHHHHHHEEEEEEEEEEEEHH
T ss_pred             CCeEeCCCcccccccccCCeEEEECCCcccccchhhHhhcCCCCCchHHHHHHHHHHHhCCCCEEEEEecCc
Confidence            889999986643 234579999854211110             0112469999999999999988766544

>2k4m_A TR8_protein, UPF0146 protein MTH_1000; alpha+beta, rossman fold, structural genomics, PSI-2; NMR {Methanothermobacterthermautotrophicus str}

Probab=98.20  E-value=1.8e-06  Score=71.61  Aligned_cols=87  Identities=18%  Similarity=0.228  Sum_probs=64.8

Q ss_pred             CCCCEEEEeccCCChhhHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEccccchhhcC-CCcceee
Q 042119          129 VQPKKVAFVGSGPMPLTSIIMAKHHLTSTHFDNFDIDEAANDVARSIVASDAEFEGRMKFLTRDIMEVKEQL-GEYDCIF  207 (286)
Q Consensus       129 ~~~~~VL~IG~G~lp~tai~lA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~g~l~~~i~f~~~D~~~~~~~l-~~fD~V~  207 (286)
                      ..+.||++||||+++..|..||+.  .|..|+++|++|.+++                 |++.|+.+...++ +.||+|+
T Consensus        34 ~~~~rVlEVG~G~g~~vA~~La~~--~g~~V~atDInp~Av~-----------------~v~dDiF~P~~~~Y~~~DLIY   94 (153)
T 2k4m_A           34 GPGTRVVEVGAGRFLYVSDYIRKH--SKVDLVLTDIKPSHGG-----------------IVRDDITSPRMEIYRGAALIY   94 (153)
T ss_dssp             CSSSEEEEETCTTCCHHHHHHHHH--SCCEEEEECSSCSSTT-----------------EECCCSSSCCHHHHTTEEEEE
T ss_pred             CCCCcEEEEccCCChHHHHHHHHh--CCCeEEEEECCccccc-----------------eEEccCCCCcccccCCcCEEE
Confidence            567899999999876789999963  7899999999998866                 8888886633332 4899998


Q ss_pred             hhhhccCChhHHHHHHHHHHhhccCCcEEEEee
Q 042119          208 LAALVGMSKEEKLTILGHIRKYMKDGGILLVRS  240 (286)
Q Consensus       208 ~aalvg~~~~~k~~vl~~l~~~l~pgg~lv~r~  240 (286)
                      .-.-    +++-...+..+++.+  |+-++++.
T Consensus        95 sirP----P~El~~~i~~lA~~v--~adliI~p  121 (153)
T 2k4m_A           95 SIRP----PAEIHSSLMRVADAV--GARLIIKP  121 (153)
T ss_dssp             EESC----CTTTHHHHHHHHHHH--TCEEEEEC
T ss_pred             EcCC----CHHHHHHHHHHHHHc--CCCEEEEc
Confidence            4332    245556666777664  67788874

>3s2e_A Zinc-containing alcohol dehydrogenase superfamily; FURX, oxidoreductase; HET: NAD; 1.76A {Ralstonia eutropha} PDB: 3s1l_A* 3s2f_A* 3s2g_A* 3s2i_A* 1llu_A* 3meq_A*

Probab=98.06  E-value=5.7e-06  Score=76.20  Aligned_cols=107  Identities=17%  Similarity=0.231  Sum_probs=75.5

Q ss_pred             HHHHHhcCCCCCCEEEEeccCCChhhHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEccccch-hh
Q 042119          120 YTILSENGVVQPKKVAFVGSGPMPLTSIIMAKHHLTSTHFDNFDIDEAANDVARSIVASDAEFEGRMKFLTRDIMEV-KE  198 (286)
Q Consensus       120 ~~~l~~~~~~~~~~VL~IG~G~lp~tai~lA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~g~l~~~i~f~~~D~~~~-~~  198 (286)
                      +.++.+..+.++++||.+|+|++|+.++.+|+.  .|++|+++|.+++..+++++    +|. ..-+.....|..+. ..
T Consensus       156 ~~~l~~~~~~~g~~VlV~GaG~vG~~a~qla~~--~Ga~Vi~~~~~~~~~~~~~~----lGa-~~~i~~~~~~~~~~~~~  228 (340)
T 3s2e_A          156 YKGLKVTDTRPGQWVVISGIGGLGHVAVQYARA--MGLRVAAVDIDDAKLNLARR----LGA-EVAVNARDTDPAAWLQK  228 (340)
T ss_dssp             HHHHHTTTCCTTSEEEEECCSTTHHHHHHHHHH--TTCEEEEEESCHHHHHHHHH----TTC-SEEEETTTSCHHHHHHH
T ss_pred             HHHHHHcCCCCCCEEEEECCCHHHHHHHHHHHH--CCCeEEEEeCCHHHHHHHHH----cCC-CEEEeCCCcCHHHHHHH
Confidence            345556677899999999999999999999994  68999999999999887765    562 21111111122111 11


Q ss_pred             cCCCcceeehhhhccCChhHHHHHHHHHHhhccCCcEEEEee
Q 042119          199 QLGEYDCIFLAALVGMSKEEKLTILGHIRKYMKDGGILLVRS  240 (286)
Q Consensus       199 ~l~~fD~V~~aalvg~~~~~k~~vl~~l~~~l~pgg~lv~r~  240 (286)
                      ..+++|+||.+...       ...++...+.|+|||+++.-.
T Consensus       229 ~~g~~d~vid~~g~-------~~~~~~~~~~l~~~G~iv~~G  263 (340)
T 3s2e_A          229 EIGGAHGVLVTAVS-------PKAFSQAIGMVRRGGTIALNG  263 (340)
T ss_dssp             HHSSEEEEEESSCC-------HHHHHHHHHHEEEEEEEEECS
T ss_pred             hCCCCCEEEEeCCC-------HHHHHHHHHHhccCCEEEEeC
Confidence            11379999876432       146778889999999998864

>1pl8_A Human sorbitol dehydrogenase; NAD, oxidoreductase; HET: NAD; 1.90A {Homo sapiens} SCOP: b.35.1.2 c.2.1.1 PDB: 1pl7_A 1pl6_A* 3qe3_A

Probab=98.00  E-value=9.8e-06  Score=75.22  Aligned_cols=102  Identities=16%  Similarity=0.187  Sum_probs=72.3

Q ss_pred             HHHhcCCCCCCEEEEeccCCChhhHHHHHhhcCCCc-EEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEc-----ccc-
Q 042119          122 ILSENGVVQPKKVAFVGSGPMPLTSIIMAKHHLTST-HFDNFDIDEAANDVARSIVASDAEFEGRMKFLTR-----DIM-  194 (286)
Q Consensus       122 ~l~~~~~~~~~~VL~IG~G~lp~tai~lA~~~~~g~-~V~~iDid~~ai~~Ar~~~~~~g~l~~~i~f~~~-----D~~-  194 (286)
                      ++.+..+.++++||.+|+|++|+.++.+|+.  .|+ +|+++|.+++..+++++    +|.  +. .+...     |.. 
T Consensus       163 al~~~~~~~g~~VlV~GaG~vG~~aiqlak~--~Ga~~Vi~~~~~~~~~~~a~~----lGa--~~-vi~~~~~~~~~~~~  233 (356)
T 1pl8_A          163 ACRRGGVTLGHKVLVCGAGPIGMVTLLVAKA--MGAAQVVVTDLSATRLSKAKE----IGA--DL-VLQISKESPQEIAR  233 (356)
T ss_dssp             HHHHHTCCTTCEEEEECCSHHHHHHHHHHHH--TTCSEEEEEESCHHHHHHHHH----TTC--SE-EEECSSCCHHHHHH
T ss_pred             HHHhcCCCCCCEEEEECCCHHHHHHHHHHHH--cCCCEEEEECCCHHHHHHHHH----hCC--CE-EEcCcccccchHHH
Confidence            3345567899999999999999999999994  688 99999999998887765    562  21 12111     111 


Q ss_pred             chhh--cCCCcceeehhhhccCChhHHHHHHHHHHhhccCCcEEEEee
Q 042119          195 EVKE--QLGEYDCIFLAALVGMSKEEKLTILGHIRKYMKDGGILLVRS  240 (286)
Q Consensus       195 ~~~~--~l~~fD~V~~aalvg~~~~~k~~vl~~l~~~l~pgg~lv~r~  240 (286)
                      .+..  . .+||+||.+.-.       ...++...+.|+|||+++.-.
T Consensus       234 ~i~~~~~-~g~D~vid~~g~-------~~~~~~~~~~l~~~G~iv~~G  273 (356)
T 1pl8_A          234 KVEGQLG-CKPEVTIECTGA-------EASIQAGIYATRSGGTLVLVG  273 (356)
T ss_dssp             HHHHHHT-SCCSEEEECSCC-------HHHHHHHHHHSCTTCEEEECS
T ss_pred             HHHHHhC-CCCCEEEECCCC-------hHHHHHHHHHhcCCCEEEEEe
Confidence            1111  2 479999966431       135677889999999998764

>1wg8_A Predicted S-adenosylmethionine-dependent methyltransferase; S-adenosyl-methyltransferase, MRAW; HET: SAM; 2.00A {Thermus thermophilus} SCOP: a.60.13.1 c.66.1.23

Probab=98.00  E-value=1e-05  Score=73.79  Aligned_cols=76  Identities=13%  Similarity=0.049  Sum_probs=60.1

Q ss_pred             CCCCCCEEEEeccCCChhhHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEccccchhhc-----CC
Q 042119          127 GVVQPKKVAFVGSGPMPLTSIIMAKHHLTSTHFDNFDIDEAANDVARSIVASDAEFEGRMKFLTRDIMEVKEQ-----LG  201 (286)
Q Consensus       127 ~~~~~~~VL~IG~G~lp~tai~lA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~g~l~~~i~f~~~D~~~~~~~-----l~  201 (286)
                      .+.++..++|.+||.+|.|. .+++   .+++|+|+|+||+|++.|++ ++.     ++++|+++|..++...     ++
T Consensus        19 ~~~~gg~~VD~T~G~GGHS~-~il~---~~g~VigiD~Dp~Ai~~A~~-L~~-----~rv~lv~~~f~~l~~~L~~~g~~   88 (285)
T 1wg8_A           19 AVRPGGVYVDATLGGAGHAR-GILE---RGGRVIGLDQDPEAVARAKG-LHL-----PGLTVVQGNFRHLKRHLAALGVE   88 (285)
T ss_dssp             TCCTTCEEEETTCTTSHHHH-HHHH---TTCEEEEEESCHHHHHHHHH-TCC-----TTEEEEESCGGGHHHHHHHTTCS
T ss_pred             CCCCCCEEEEeCCCCcHHHH-HHHH---CCCEEEEEeCCHHHHHHHHh-hcc-----CCEEEEECCcchHHHHHHHcCCC
Confidence            56788999999999877765 4555   27899999999999999998 532     4899999999887432     24


Q ss_pred             Ccceeehhhhc
Q 042119          202 EYDCIFLAALV  212 (286)
Q Consensus       202 ~fD~V~~aalv  212 (286)
                      .||.|+++-.+
T Consensus        89 ~vDgIL~DLGv   99 (285)
T 1wg8_A           89 RVDGILADLGV   99 (285)
T ss_dssp             CEEEEEEECSC
T ss_pred             CcCEEEeCCcc
Confidence            69999876444

>4ej6_A Putative zinc-binding dehydrogenase; structural genomics, nysgrc, PSI-biology, NEW YORK structura genomics research consortium; 1.89A {Sinorhizobium meliloti} PDB: 4ejm_A*

Probab=97.98  E-value=6.3e-06  Score=77.19  Aligned_cols=105  Identities=17%  Similarity=0.220  Sum_probs=75.2

Q ss_pred             HHHhcCCCCCCEEEEeccCCChhhHHHHHhhcCCCc-EEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEccccchhhc-
Q 042119          122 ILSENGVVQPKKVAFVGSGPMPLTSIIMAKHHLTST-HFDNFDIDEAANDVARSIVASDAEFEGRMKFLTRDIMEVKEQ-  199 (286)
Q Consensus       122 ~l~~~~~~~~~~VL~IG~G~lp~tai~lA~~~~~g~-~V~~iDid~~ai~~Ar~~~~~~g~l~~~i~f~~~D~~~~~~~-  199 (286)
                      ++.+..+.++++||.+|+|++|+.++.+|+.  .|+ +|+++|.+++..+++++    +| ...-+.+...|..+.... 
T Consensus       174 ~l~~~~~~~g~~VlV~GaG~vG~~aiqlak~--~Ga~~Vi~~~~~~~~~~~a~~----lG-a~~vi~~~~~~~~~~i~~~  246 (370)
T 4ej6_A          174 GVDLSGIKAGSTVAILGGGVIGLLTVQLARL--AGATTVILSTRQATKRRLAEE----VG-ATATVDPSAGDVVEAIAGP  246 (370)
T ss_dssp             HHHHHTCCTTCEEEEECCSHHHHHHHHHHHH--TTCSEEEEECSCHHHHHHHHH----HT-CSEEECTTSSCHHHHHHST
T ss_pred             HHHhcCCCCCCEEEEECCCHHHHHHHHHHHH--cCCCEEEEECCCHHHHHHHHH----cC-CCEEECCCCcCHHHHHHhh
Confidence            4455677899999999999999999999994  788 99999999999888776    46 221122222333222222 


Q ss_pred             --C--CCcceeehhhhccCChhHHHHHHHHHHhhccCCcEEEEee
Q 042119          200 --L--GEYDCIFLAALVGMSKEEKLTILGHIRKYMKDGGILLVRS  240 (286)
Q Consensus       200 --l--~~fD~V~~aalvg~~~~~k~~vl~~l~~~l~pgg~lv~r~  240 (286)
                        +  ++||+||.+.-.       ...++...+.|++||++++-.
T Consensus       247 ~~~~~gg~Dvvid~~G~-------~~~~~~~~~~l~~~G~vv~~G  284 (370)
T 4ej6_A          247 VGLVPGGVDVVIECAGV-------AETVKQSTRLAKAGGTVVILG  284 (370)
T ss_dssp             TSSSTTCEEEEEECSCC-------HHHHHHHHHHEEEEEEEEECS
T ss_pred             hhccCCCCCEEEECCCC-------HHHHHHHHHHhccCCEEEEEe
Confidence              1  369999965421       146778889999999998864

>2h6e_A ADH-4, D-arabinose 1-dehydrogenase; rossman fold, medium chain alcohol dehydrogenase, oxidoreduc; 1.80A {Sulfolobus solfataricus}

Probab=97.97  E-value=5.9e-06  Score=76.30  Aligned_cols=100  Identities=9%  Similarity=0.043  Sum_probs=70.1

Q ss_pred             CCCCCCEEEEeccCCChhhHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCe-EEEE-ccccchhhcCCCcc
Q 042119          127 GVVQPKKVAFVGSGPMPLTSIIMAKHHLTSTHFDNFDIDEAANDVARSIVASDAEFEGRM-KFLT-RDIMEVKEQLGEYD  204 (286)
Q Consensus       127 ~~~~~~~VL~IG~G~lp~tai~lA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~g~l~~~i-~f~~-~D~~~~~~~l~~fD  204 (286)
                      .+ ++++||.+|+|++|+.++.+|+..++|++|+++|.+++..+++++    +|.  +.+ .+.. .|..+....-.+||
T Consensus       168 ~~-~g~~VlV~GaG~vG~~aiqlak~~~~Ga~Vi~~~~~~~~~~~~~~----lGa--~~vi~~~~~~~~~~~~~~g~g~D  240 (344)
T 2h6e_A          168 KF-AEPVVIVNGIGGLAVYTIQILKALMKNITIVGISRSKKHRDFALE----LGA--DYVSEMKDAESLINKLTDGLGAS  240 (344)
T ss_dssp             TC-SSCEEEEECCSHHHHHHHHHHHHHCTTCEEEEECSCHHHHHHHHH----HTC--SEEECHHHHHHHHHHHHTTCCEE
T ss_pred             CC-CCCEEEEECCCHHHHHHHHHHHHhcCCCEEEEEeCCHHHHHHHHH----hCC--CEEeccccchHHHHHhhcCCCcc
Confidence            66 899999999999999999999953348999999999999888776    462  211 1111 11111111112699


Q ss_pred             eeehhhhccCChhHHHHHHHHHHhhccCCcEEEEee
Q 042119          205 CIFLAALVGMSKEEKLTILGHIRKYMKDGGILLVRS  240 (286)
Q Consensus       205 ~V~~aalvg~~~~~k~~vl~~l~~~l~pgg~lv~r~  240 (286)
                      +||.+.-.       ...++...+.|+|||+++.-.
T Consensus       241 ~vid~~g~-------~~~~~~~~~~l~~~G~iv~~g  269 (344)
T 2h6e_A          241 IAIDLVGT-------EETTYNLGKLLAQEGAIILVG  269 (344)
T ss_dssp             EEEESSCC-------HHHHHHHHHHEEEEEEEEECC
T ss_pred             EEEECCCC-------hHHHHHHHHHhhcCCEEEEeC
Confidence            99966431       136778889999999998754

>3fpc_A NADP-dependent alcohol dehydrogenase; oxydoreductase, bacterial alcohol dehydrogenase, domain exchange, chimera, metal-binding; 1.40A {Thermoanaerobacter brockii} PDB: 2nvb_A* 1ykf_A* 1bxz_A* 3ftn_A 3fsr_A 1y9a_A* 2oui_A* 3fpl_A* 1jqb_A 1kev_A* 1ped_A 2b83_A

Probab=97.95  E-value=4.5e-06  Score=77.34  Aligned_cols=105  Identities=16%  Similarity=0.123  Sum_probs=73.5

Q ss_pred             HHHhcCCCCCCEEEEeccCCChhhHHHHHhhcCCCc-EEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEccccchhhc-
Q 042119          122 ILSENGVVQPKKVAFVGSGPMPLTSIIMAKHHLTST-HFDNFDIDEAANDVARSIVASDAEFEGRMKFLTRDIMEVKEQ-  199 (286)
Q Consensus       122 ~l~~~~~~~~~~VL~IG~G~lp~tai~lA~~~~~g~-~V~~iDid~~ai~~Ar~~~~~~g~l~~~i~f~~~D~~~~~~~-  199 (286)
                      ++.+..++++++||.+|+|++|+.++.+|+  ..|+ +|+++|.+++..+++++    +|. ..-+.....|..+.... 
T Consensus       158 al~~~~~~~g~~VlV~GaG~vG~~a~qla~--~~Ga~~Vi~~~~~~~~~~~~~~----lGa-~~vi~~~~~~~~~~v~~~  230 (352)
T 3fpc_A          158 GAELANIKLGDTVCVIGIGPVGLMSVAGAN--HLGAGRIFAVGSRKHCCDIALE----YGA-TDIINYKNGDIVEQILKA  230 (352)
T ss_dssp             HHHHTTCCTTCCEEEECCSHHHHHHHHHHH--TTTCSSEEEECCCHHHHHHHHH----HTC-CEEECGGGSCHHHHHHHH
T ss_pred             HHHhcCCCCCCEEEEECCCHHHHHHHHHHH--HcCCcEEEEECCCHHHHHHHHH----hCC-ceEEcCCCcCHHHHHHHH
Confidence            445667789999999999999999999999  4788 89999999998888876    462 11111111222111111 


Q ss_pred             C--CCcceeehhhhccCChhHHHHHHHHHHhhccCCcEEEEee
Q 042119          200 L--GEYDCIFLAALVGMSKEEKLTILGHIRKYMKDGGILLVRS  240 (286)
Q Consensus       200 l--~~fD~V~~aalvg~~~~~k~~vl~~l~~~l~pgg~lv~r~  240 (286)
                      .  .+||+||.+.-.     +  ..++...+.|+|||+++.-.
T Consensus       231 t~g~g~D~v~d~~g~-----~--~~~~~~~~~l~~~G~~v~~G  266 (352)
T 3fpc_A          231 TDGKGVDKVVIAGGD-----V--HTFAQAVKMIKPGSDIGNVN  266 (352)
T ss_dssp             TTTCCEEEEEECSSC-----T--THHHHHHHHEEEEEEEEECC
T ss_pred             cCCCCCCEEEECCCC-----h--HHHHHHHHHHhcCCEEEEec
Confidence            1  269999965421     1  36778889999999998865

>3two_A Mannitol dehydrogenase; cinnamyl-alcohol dehydrogenase, NADP(H) oxidoreductase; HET: NDP; 2.18A {Helicobacter pylori}

Probab=97.94  E-value=1.3e-05  Score=73.97  Aligned_cols=100  Identities=21%  Similarity=0.166  Sum_probs=74.8

Q ss_pred             HHHHHhcCCCCCCEEEEeccCCChhhHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEccccchhhc
Q 042119          120 YTILSENGVVQPKKVAFVGSGPMPLTSIIMAKHHLTSTHFDNFDIDEAANDVARSIVASDAEFEGRMKFLTRDIMEVKEQ  199 (286)
Q Consensus       120 ~~~l~~~~~~~~~~VL~IG~G~lp~tai~lA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~g~l~~~i~f~~~D~~~~~~~  199 (286)
                      +.++.+..+.++++||.+|+|++|+.++.+|+.  .|++|+++|.+++..+++++    +|.  +. .+  .|...+.  
T Consensus       166 ~~~l~~~~~~~g~~VlV~GaG~vG~~a~qla~~--~Ga~Vi~~~~~~~~~~~~~~----lGa--~~-v~--~~~~~~~--  232 (348)
T 3two_A          166 YSPLKFSKVTKGTKVGVAGFGGLGSMAVKYAVA--MGAEVSVFARNEHKKQDALS----MGV--KH-FY--TDPKQCK--  232 (348)
T ss_dssp             HHHHHHTTCCTTCEEEEESCSHHHHHHHHHHHH--TTCEEEEECSSSTTHHHHHH----TTC--SE-EE--SSGGGCC--
T ss_pred             HHHHHhcCCCCCCEEEEECCcHHHHHHHHHHHH--CCCeEEEEeCCHHHHHHHHh----cCC--Ce-ec--CCHHHHh--
Confidence            345556677899999999999999999999994  68999999999999887765    662  22 22  4432222  


Q ss_pred             CCCcceeehhhhccCChhHHHHHHHHHHhhccCCcEEEEee
Q 042119          200 LGEYDCIFLAALVGMSKEEKLTILGHIRKYMKDGGILLVRS  240 (286)
Q Consensus       200 l~~fD~V~~aalvg~~~~~k~~vl~~l~~~l~pgg~lv~r~  240 (286)
                       .++|+||.+.-.  .     ..++...+.|+|||+++.-.
T Consensus       233 -~~~D~vid~~g~--~-----~~~~~~~~~l~~~G~iv~~G  265 (348)
T 3two_A          233 -EELDFIISTIPT--H-----YDLKDYLKLLTYNGDLALVG  265 (348)
T ss_dssp             -SCEEEEEECCCS--C-----CCHHHHHTTEEEEEEEEECC
T ss_pred             -cCCCEEEECCCc--H-----HHHHHHHHHHhcCCEEEEEC
Confidence             279999965421  1     25667888999999999875

>3m6i_A L-arabinitol 4-dehydrogenase; medium chain dehydrogenase/reductase, oxidoreductase; HET: NAD; 2.60A {Neurospora crassa}

Probab=97.91  E-value=3.1e-05  Score=71.87  Aligned_cols=104  Identities=23%  Similarity=0.225  Sum_probs=75.2

Q ss_pred             HHHhcCCCCCCEEEEeccCCChhhHHHHHhhcCCCcE-EEEEeCChHHHHHHHHHHHhcCCCCCCeEEEE-----ccccc
Q 042119          122 ILSENGVVQPKKVAFVGSGPMPLTSIIMAKHHLTSTH-FDNFDIDEAANDVARSIVASDAEFEGRMKFLT-----RDIME  195 (286)
Q Consensus       122 ~l~~~~~~~~~~VL~IG~G~lp~tai~lA~~~~~g~~-V~~iDid~~ai~~Ar~~~~~~g~l~~~i~f~~-----~D~~~  195 (286)
                      ++.+..+.++++||.+|+|++|+.++.+|+.  .|++ |+++|.+++..++++++ . .    .-+.+..     .|..+
T Consensus       171 ~l~~~~~~~g~~VlV~GaG~vG~~aiqlak~--~Ga~~Vi~~~~~~~~~~~a~~l-~-~----~~~~~~~~~~~~~~~~~  242 (363)
T 3m6i_A          171 GLQRAGVRLGDPVLICGAGPIGLITMLCAKA--AGACPLVITDIDEGRLKFAKEI-C-P----EVVTHKVERLSAEESAK  242 (363)
T ss_dssp             HHHHHTCCTTCCEEEECCSHHHHHHHHHHHH--TTCCSEEEEESCHHHHHHHHHH-C-T----TCEEEECCSCCHHHHHH
T ss_pred             HHHHcCCCCCCEEEEECCCHHHHHHHHHHHH--cCCCEEEEECCCHHHHHHHHHh-c-h----hcccccccccchHHHHH
Confidence            4455677899999999999999999999994  7887 99999999999999986 2 1    2234331     12211


Q ss_pred             -hhhc--CCCcceeehhhhccCChhHHHHHHHHHHhhccCCcEEEEee
Q 042119          196 -VKEQ--LGEYDCIFLAALVGMSKEEKLTILGHIRKYMKDGGILLVRS  240 (286)
Q Consensus       196 -~~~~--l~~fD~V~~aalvg~~~~~k~~vl~~l~~~l~pgg~lv~r~  240 (286)
                       +...  -.++|+||.+.-.     +  ..++...+.|++||++++-.
T Consensus       243 ~v~~~t~g~g~Dvvid~~g~-----~--~~~~~~~~~l~~~G~iv~~G  283 (363)
T 3m6i_A          243 KIVESFGGIEPAVALECTGV-----E--SSIAAAIWAVKFGGKVFVIG  283 (363)
T ss_dssp             HHHHHTSSCCCSEEEECSCC-----H--HHHHHHHHHSCTTCEEEECC
T ss_pred             HHHHHhCCCCCCEEEECCCC-----h--HHHHHHHHHhcCCCEEEEEc
Confidence             1111  1369999965421     1  36778889999999998864

>1kol_A Formaldehyde dehydrogenase; oxidoreductase; HET: NAD; 1.65A {Pseudomonas putida} SCOP: b.35.1.2 c.2.1.1

Probab=97.88  E-value=8.2e-06  Score=76.81  Aligned_cols=111  Identities=19%  Similarity=0.185  Sum_probs=74.2

Q ss_pred             HHHhcCCCCCCEEEEeccCCChhhHHHHHhhcCCCc-EEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEcc-ccc-hhh
Q 042119          122 ILSENGVVQPKKVAFVGSGPMPLTSIIMAKHHLTST-HFDNFDIDEAANDVARSIVASDAEFEGRMKFLTRD-IME-VKE  198 (286)
Q Consensus       122 ~l~~~~~~~~~~VL~IG~G~lp~tai~lA~~~~~g~-~V~~iDid~~ai~~Ar~~~~~~g~l~~~i~f~~~D-~~~-~~~  198 (286)
                      ++.+..++++++||.+|+|++|+.++.+|+.  .|+ +|+++|.+++..+++++    +| . +-+.+...| ..+ +..
T Consensus       177 al~~~~~~~g~~VlV~GaG~vG~~aiqlAk~--~Ga~~Vi~~~~~~~~~~~a~~----lG-a-~~i~~~~~~~~~~~v~~  248 (398)
T 1kol_A          177 GAVTAGVGPGSTVYVAGAGPVGLAAAASARL--LGAAVVIVGDLNPARLAHAKA----QG-F-EIADLSLDTPLHEQIAA  248 (398)
T ss_dssp             HHHHTTCCTTCEEEEECCSHHHHHHHHHHHH--TTCSEEEEEESCHHHHHHHHH----TT-C-EEEETTSSSCHHHHHHH
T ss_pred             HHHHcCCCCCCEEEEECCcHHHHHHHHHHHH--CCCCeEEEEcCCHHHHHHHHH----cC-C-cEEccCCcchHHHHHHH
Confidence            3445567899999999999999999999994  677 79999999999888865    57 2 212211111 111 111


Q ss_pred             --cCCCcceeehhhhcc--------CChhHHHHHHHHHHhhccCCcEEEEee
Q 042119          199 --QLGEYDCIFLAALVG--------MSKEEKLTILGHIRKYMKDGGILLVRS  240 (286)
Q Consensus       199 --~l~~fD~V~~aalvg--------~~~~~k~~vl~~l~~~l~pgg~lv~r~  240 (286)
                        .-.++|+||.+.-..        +..+.+...++...+.|++||++++-.
T Consensus       249 ~t~g~g~Dvvid~~G~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~G~iv~~G  300 (398)
T 1kol_A          249 LLGEPEVDCAVDAVGFEARGHGHEGAKHEAPATVLNSLMQVTRVAGKIGIPG  300 (398)
T ss_dssp             HHSSSCEEEEEECCCTTCBCSSTTGGGSBCTTHHHHHHHHHEEEEEEEEECS
T ss_pred             HhCCCCCCEEEECCCCcccccccccccccchHHHHHHHHHHHhcCCEEEEec
Confidence              113699999654310        000112346788899999999998754

>3lkd_A Type I restriction-modification system methyltransferase subunit; Q5M500_STRT2, STU0711, NESG, SUR80, structural genomics, PSI-2; 2.25A {Streptococcus thermophilus}

Probab=97.87  E-value=4.2e-05  Score=75.73  Aligned_cols=129  Identities=12%  Similarity=0.105  Sum_probs=86.0

Q ss_pred             hhhhHHHHHHHHhcC-CCCCCEEEEeccCCChhhHHHHHhhc--CCCcEEEEEeCChHHHHHHHHHHHhcCCCC-CCeEE
Q 042119          113 VKLSKLEYTILSENG-VVQPKKVAFVGSGPMPLTSIIMAKHH--LTSTHFDNFDIDEAANDVARSIVASDAEFE-GRMKF  188 (286)
Q Consensus       113 ~~l~~~E~~~l~~~~-~~~~~~VL~IG~G~lp~tai~lA~~~--~~g~~V~~iDid~~ai~~Ar~~~~~~g~l~-~~i~f  188 (286)
                      ..+++.=...+.... +.++.+|+|.+||++++.... +++.  ....+++|+|+++.+.++|+.++.-.| +. +++++
T Consensus       203 ~~Vv~lmv~ll~~~~~~~~~~~VlDPaCGSG~fLi~a-~~~l~~~~~~~i~G~Eid~~~~~lA~~Nl~l~g-i~~~~~~I  280 (542)
T 3lkd_A          203 QPVAKLMTQIAFLGREDKQGFTLYDATMGSGSLLLNA-KRYSRQPQTVVYFGQELNTSTYNLARMNMILHG-VPIENQFL  280 (542)
T ss_dssp             HHHHHHHHHHHHTTCTTCTTCEEEETTCTTSTTGGGH-HHHCSCTTTCEEEEEESCHHHHHHHHHHHHHTT-CCGGGEEE
T ss_pred             HHHHHHHHHHHhcccCCCCCCEEeecccchhHHHHHH-HHHHHhccCceEEEEECcHHHHHHHHHHHHHcC-CCcCccce
Confidence            334544444442211 357789999999998775433 3321  236899999999999999999988778 44 47899


Q ss_pred             EEccccch--hh-cCCCcceeehhhh--ccC------------------Chh--HHHHHHHHHHhhcc-CCcEEEEeecC
Q 042119          189 LTRDIMEV--KE-QLGEYDCIFLAAL--VGM------------------SKE--EKLTILGHIRKYMK-DGGILLVRSAK  242 (286)
Q Consensus       189 ~~~D~~~~--~~-~l~~fD~V~~aal--vg~------------------~~~--~k~~vl~~l~~~l~-pgg~lv~r~~~  242 (286)
                      .++|....  +. ....||+|+..--  ..+                  +..  .-..+++++.+.|+ |||++.+-.++
T Consensus       281 ~~gDtL~~d~p~~~~~~fD~IvaNPPf~~~~~~~~~~~~d~rf~~~G~~~~~s~~~~~Fl~~~l~~Lk~~gGr~a~VlP~  360 (542)
T 3lkd_A          281 HNADTLDEDWPTQEPTNFDGVLMNPPYSAKWSASSGFMDDPRFSPFGKLAPKSKADFAFLLHGYYHLKQDNGVMAIVLPH  360 (542)
T ss_dssp             EESCTTTSCSCCSSCCCBSEEEECCCTTCCCCCCGGGGGSTTTGGGSSCCCTTCCHHHHHHHHHHTBCTTTCEEEEEEET
T ss_pred             EecceecccccccccccccEEEecCCcCCccccchhhhhhhhhhhhhhcCCCchhhHHHHHHHHHHhCCCceeEEEEecc
Confidence            99998654  21 2347999974310  000                  000  01248999999999 99998776655


Q ss_pred             c
Q 042119          243 G  243 (286)
Q Consensus       243 g  243 (286)
                      |
T Consensus       361 g  361 (542)
T 3lkd_A          361 G  361 (542)
T ss_dssp             H
T ss_pred             h
Confidence            4

>1f8f_A Benzyl alcohol dehydrogenase; rossmann fold, oxidoreductase; HET: NAD; 2.20A {Acinetobacter calcoaceticus} SCOP: b.35.1.2 c.2.1.1

Probab=97.87  E-value=1.2e-05  Score=75.07  Aligned_cols=103  Identities=17%  Similarity=0.132  Sum_probs=71.9

Q ss_pred             HhcCCCCCCEEEEeccCCChhhHHHHHhhcCCCc-EEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEccccchhhcC--
Q 042119          124 SENGVVQPKKVAFVGSGPMPLTSIIMAKHHLTST-HFDNFDIDEAANDVARSIVASDAEFEGRMKFLTRDIMEVKEQL--  200 (286)
Q Consensus       124 ~~~~~~~~~~VL~IG~G~lp~tai~lA~~~~~g~-~V~~iDid~~ai~~Ar~~~~~~g~l~~~i~f~~~D~~~~~~~l--  200 (286)
                      .+..++++++||.+|+|++|+.++.+|+.  .|+ +|+++|.+++..+++++    +|. ..-+.....|..+....+  
T Consensus       184 ~~~~~~~g~~VlV~GaG~vG~~a~qlak~--~Ga~~Vi~~~~~~~~~~~a~~----lGa-~~vi~~~~~~~~~~~~~~~~  256 (371)
T 1f8f_A          184 NALKVTPASSFVTWGAGAVGLSALLAAKV--CGASIIIAVDIVESRLELAKQ----LGA-THVINSKTQDPVAAIKEITD  256 (371)
T ss_dssp             TTTCCCTTCEEEEESCSHHHHHHHHHHHH--HTCSEEEEEESCHHHHHHHHH----HTC-SEEEETTTSCHHHHHHHHTT
T ss_pred             hccCCCCCCEEEEECCCHHHHHHHHHHHH--cCCCeEEEECCCHHHHHHHHH----cCC-CEEecCCccCHHHHHHHhcC
Confidence            34567899999999999999999999994  677 79999999999888876    462 111111111221111111  


Q ss_pred             CCcceeehhhhccCChhHHHHHHHHHHhhccCCcEEEEee
Q 042119          201 GEYDCIFLAALVGMSKEEKLTILGHIRKYMKDGGILLVRS  240 (286)
Q Consensus       201 ~~fD~V~~aalvg~~~~~k~~vl~~l~~~l~pgg~lv~r~  240 (286)
                      ++||+||.+.-.       ...++...+.|+|||++++-.
T Consensus       257 gg~D~vid~~g~-------~~~~~~~~~~l~~~G~iv~~G  289 (371)
T 1f8f_A          257 GGVNFALESTGS-------PEILKQGVDALGILGKIAVVG  289 (371)
T ss_dssp             SCEEEEEECSCC-------HHHHHHHHHTEEEEEEEEECC
T ss_pred             CCCcEEEECCCC-------HHHHHHHHHHHhcCCEEEEeC
Confidence            269999965421       146788899999999998864

>1uuf_A YAHK, zinc-type alcohol dehydrogenase-like protein YAHK; oxidoreductase, zinc binding, oxydoreductase, metal-binding; 1.76A {Escherichia coli} SCOP: b.35.1.2 c.2.1.1

Probab=97.85  E-value=9.4e-06  Score=76.02  Aligned_cols=103  Identities=19%  Similarity=0.247  Sum_probs=73.1

Q ss_pred             HHHHhcCCCCCCEEEEeccCCChhhHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEccccchhhcC
Q 042119          121 TILSENGVVQPKKVAFVGSGPMPLTSIIMAKHHLTSTHFDNFDIDEAANDVARSIVASDAEFEGRMKFLTRDIMEVKEQL  200 (286)
Q Consensus       121 ~~l~~~~~~~~~~VL~IG~G~lp~tai~lA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~g~l~~~i~f~~~D~~~~~~~l  200 (286)
                      .++.+..++++++||.+|+|++|+.++.+|+.  .|++|+++|.+++..+.+++    +|.  +.+ +-..+ .+....+
T Consensus       185 ~al~~~~~~~g~~VlV~GaG~vG~~aiqlak~--~Ga~Vi~~~~~~~~~~~a~~----lGa--~~v-i~~~~-~~~~~~~  254 (369)
T 1uuf_A          185 SPLRHWQAGPGKKVGVVGIGGLGHMGIKLAHA--MGAHVVAFTTSEAKREAAKA----LGA--DEV-VNSRN-ADEMAAH  254 (369)
T ss_dssp             HHHHHTTCCTTCEEEEECCSHHHHHHHHHHHH--TTCEEEEEESSGGGHHHHHH----HTC--SEE-EETTC-HHHHHTT
T ss_pred             HHHHhcCCCCCCEEEEECCCHHHHHHHHHHHH--CCCEEEEEeCCHHHHHHHHH----cCC--cEE-ecccc-HHHHHHh
Confidence            34555567899999999999999999999994  68999999999999888876    562  211 21111 1111122


Q ss_pred             -CCcceeehhhhccCChhHHHHHHHHHHhhccCCcEEEEee
Q 042119          201 -GEYDCIFLAALVGMSKEEKLTILGHIRKYMKDGGILLVRS  240 (286)
Q Consensus       201 -~~fD~V~~aalvg~~~~~k~~vl~~l~~~l~pgg~lv~r~  240 (286)
                       .+||+||.+.-.  .     ..++...+.|+|||+++.-.
T Consensus       255 ~~g~Dvvid~~g~--~-----~~~~~~~~~l~~~G~iv~~G  288 (369)
T 1uuf_A          255 LKSFDFILNTVAA--P-----HNLDDFTTLLKRDGTMTLVG  288 (369)
T ss_dssp             TTCEEEEEECCSS--C-----CCHHHHHTTEEEEEEEEECC
T ss_pred             hcCCCEEEECCCC--H-----HHHHHHHHHhccCCEEEEec
Confidence             479999965432  1     24566788999999998754

>1rjw_A ADH-HT, alcohol dehydrogenase; oxidoreductase, NAD, zinc, tetramer; 2.35A {Geobacillus stearothermophilus} SCOP: b.35.1.2 c.2.1.1 PDB: 3pii_A

Probab=97.85  E-value=2e-05  Score=72.57  Aligned_cols=105  Identities=16%  Similarity=0.215  Sum_probs=72.9

Q ss_pred             HHHHhcCCCCCCEEEEeccCCChhhHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCe-EEEEccccchhhc
Q 042119          121 TILSENGVVQPKKVAFVGSGPMPLTSIIMAKHHLTSTHFDNFDIDEAANDVARSIVASDAEFEGRM-KFLTRDIMEVKEQ  199 (286)
Q Consensus       121 ~~l~~~~~~~~~~VL~IG~G~lp~tai~lA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~g~l~~~i-~f~~~D~~~~~~~  199 (286)
                      .++.+..+.++++||.+|+|++|+.++.+|+.  .|++|+++|.+++..+.+++    +|.  +.+ .+...|..+....
T Consensus       155 ~~l~~~~~~~g~~VlV~GaG~vG~~~~~~a~~--~Ga~Vi~~~~~~~~~~~~~~----lGa--~~~~d~~~~~~~~~~~~  226 (339)
T 1rjw_A          155 KALKVTGAKPGEWVAIYGIGGLGHVAVQYAKA--MGLNVVAVDIGDEKLELAKE----LGA--DLVVNPLKEDAAKFMKE  226 (339)
T ss_dssp             HHHHHHTCCTTCEEEEECCSTTHHHHHHHHHH--TTCEEEEECSCHHHHHHHHH----TTC--SEEECTTTSCHHHHHHH
T ss_pred             HHHHhcCCCCCCEEEEECCCHHHHHHHHHHHH--cCCEEEEEeCCHHHHHHHHH----CCC--CEEecCCCccHHHHHHH
Confidence            34445567899999999999999999999994  68999999999999888764    562  211 1100111111111


Q ss_pred             -CCCcceeehhhhccCChhHHHHHHHHHHhhccCCcEEEEee
Q 042119          200 -LGEYDCIFLAALVGMSKEEKLTILGHIRKYMKDGGILLVRS  240 (286)
Q Consensus       200 -l~~fD~V~~aalvg~~~~~k~~vl~~l~~~l~pgg~lv~r~  240 (286)
                       .+++|+||.++..       ...++...+.|++||+++.-.
T Consensus       227 ~~~~~d~vid~~g~-------~~~~~~~~~~l~~~G~~v~~g  261 (339)
T 1rjw_A          227 KVGGVHAAVVTAVS-------KPAFQSAYNSIRRGGACVLVG  261 (339)
T ss_dssp             HHSSEEEEEESSCC-------HHHHHHHHHHEEEEEEEEECC
T ss_pred             HhCCCCEEEECCCC-------HHHHHHHHHHhhcCCEEEEec
Confidence             1479999866431       136778889999999998764

>2dph_A Formaldehyde dismutase; dismutation of aldehydes, oxidoreductase; HET: NAD; 2.27A {Pseudomonas putida}

Probab=97.83  E-value=6.2e-06  Score=77.83  Aligned_cols=109  Identities=16%  Similarity=0.122  Sum_probs=73.5

Q ss_pred             HHHhcCCCCCCEEEEeccCCChhhHHHHHhhcCCCc-EEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEccc-cchhh-
Q 042119          122 ILSENGVVQPKKVAFVGSGPMPLTSIIMAKHHLTST-HFDNFDIDEAANDVARSIVASDAEFEGRMKFLTRDI-MEVKE-  198 (286)
Q Consensus       122 ~l~~~~~~~~~~VL~IG~G~lp~tai~lA~~~~~g~-~V~~iDid~~ai~~Ar~~~~~~g~l~~~i~f~~~D~-~~~~~-  198 (286)
                      ++.+..++++++||.+|+|++|+.++.+|+.  .|+ +|+++|.+++..+++++    +| . +-+.+...|. .+... 
T Consensus       177 al~~~~~~~g~~VlV~GaG~vG~~aiqlak~--~Ga~~Vi~~~~~~~~~~~a~~----lG-a-~~i~~~~~~~~~~~~~~  248 (398)
T 2dph_A          177 GCVSAGVKPGSHVYIAGAGPVGRCAAAGARL--LGAACVIVGDQNPERLKLLSD----AG-F-ETIDLRNSAPLRDQIDQ  248 (398)
T ss_dssp             HHHHTTCCTTCEEEEECCSHHHHHHHHHHHH--HTCSEEEEEESCHHHHHHHHT----TT-C-EEEETTSSSCHHHHHHH
T ss_pred             HHHHcCCCCCCEEEEECCCHHHHHHHHHHHH--cCCCEEEEEcCCHHHHHHHHH----cC-C-cEEcCCCcchHHHHHHH
Confidence            3445567899999999999999999999994  578 99999999999887764    57 2 2222211221 11111 


Q ss_pred             --cCCCcceeehhhhccCCh---------hHHHHHHHHHHhhccCCcEEEEee
Q 042119          199 --QLGEYDCIFLAALVGMSK---------EEKLTILGHIRKYMKDGGILLVRS  240 (286)
Q Consensus       199 --~l~~fD~V~~aalvg~~~---------~~k~~vl~~l~~~l~pgg~lv~r~  240 (286)
                        .-.+||+||.+.-.  ..         .+....++...+.|+|||++++-.
T Consensus       249 ~~~g~g~Dvvid~~g~--~~~~~~~~~~~~~~~~~~~~~~~~l~~gG~iv~~G  299 (398)
T 2dph_A          249 ILGKPEVDCGVDAVGF--EAHGLGDEANTETPNGALNSLFDVVRAGGAIGIPG  299 (398)
T ss_dssp             HHSSSCEEEEEECSCT--TCBCSGGGTTSBCTTHHHHHHHHHEEEEEEEECCS
T ss_pred             HhCCCCCCEEEECCCC--ccccccccccccccHHHHHHHHHHHhcCCEEEEec
Confidence              11269999966431  10         001236788899999999998754

>1e3j_A NADP(H)-dependent ketose reductase; oxidoreductase, fructose reduction; 2.3A {Bemisia argentifolii} SCOP: b.35.1.2 c.2.1.1

Probab=97.83  E-value=5.3e-05  Score=70.07  Aligned_cols=103  Identities=16%  Similarity=0.150  Sum_probs=72.7

Q ss_pred             HHHhcCCCCCCEEEEeccCCChhhHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEc---ccc-chh
Q 042119          122 ILSENGVVQPKKVAFVGSGPMPLTSIIMAKHHLTSTHFDNFDIDEAANDVARSIVASDAEFEGRMKFLTR---DIM-EVK  197 (286)
Q Consensus       122 ~l~~~~~~~~~~VL~IG~G~lp~tai~lA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~g~l~~~i~f~~~---D~~-~~~  197 (286)
                      ++.+..+.++++||.+|+|++|+.++.+|+.  .|++|+++|.+++..+++++    +|.  + ..+...   |.. ++.
T Consensus       160 al~~~~~~~g~~VlV~GaG~vG~~a~qla~~--~Ga~Vi~~~~~~~~~~~~~~----lGa--~-~~~~~~~~~~~~~~i~  230 (352)
T 1e3j_A          160 ACRRAGVQLGTTVLVIGAGPIGLVSVLAAKA--YGAFVVCTARSPRRLEVAKN----CGA--D-VTLVVDPAKEEESSII  230 (352)
T ss_dssp             HHHHHTCCTTCEEEEECCSHHHHHHHHHHHH--TTCEEEEEESCHHHHHHHHH----TTC--S-EEEECCTTTSCHHHHH
T ss_pred             HHHhcCCCCCCEEEEECCCHHHHHHHHHHHH--cCCEEEEEcCCHHHHHHHHH----hCC--C-EEEcCcccccHHHHHH
Confidence            3445567899999999999999999999994  68999999999999888764    562  2 122211   211 111


Q ss_pred             hc-----CCCcceeehhhhccCChhHHHHHHHHHHhhccCCcEEEEee
Q 042119          198 EQ-----LGEYDCIFLAALVGMSKEEKLTILGHIRKYMKDGGILLVRS  240 (286)
Q Consensus       198 ~~-----l~~fD~V~~aalvg~~~~~k~~vl~~l~~~l~pgg~lv~r~  240 (286)
                      ..     -.++|+||.+.-.       ...++...+.|+|||+++.-.
T Consensus       231 ~~~~~~~g~g~D~vid~~g~-------~~~~~~~~~~l~~~G~iv~~G  271 (352)
T 1e3j_A          231 ERIRSAIGDLPNVTIDCSGN-------EKCITIGINITRTGGTLMLVG  271 (352)
T ss_dssp             HHHHHHSSSCCSEEEECSCC-------HHHHHHHHHHSCTTCEEEECS
T ss_pred             HHhccccCCCCCEEEECCCC-------HHHHHHHHHHHhcCCEEEEEe
Confidence            11     1369999966421       135677888999999998764

>4eez_A Alcohol dehydrogenase 1; site-saturation mutagenesis, directed evolution, isobutyraldehyde, biofuel, oxidoreductase; HET: PG4; 1.90A {Lactococcus lactis subsp} PDB: 4eex_A*

Probab=97.80  E-value=3e-05  Score=71.22  Aligned_cols=106  Identities=12%  Similarity=0.120  Sum_probs=74.9

Q ss_pred             HHHhcCCCCCCEEEEeccCCChhhHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEccccchhhcC-
Q 042119          122 ILSENGVVQPKKVAFVGSGPMPLTSIIMAKHHLTSTHFDNFDIDEAANDVARSIVASDAEFEGRMKFLTRDIMEVKEQL-  200 (286)
Q Consensus       122 ~l~~~~~~~~~~VL~IG~G~lp~tai~lA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~g~l~~~i~f~~~D~~~~~~~l-  200 (286)
                      .+...+.+++++||.+|+|++|..++.+|+ ...|++|+++|.+++..+++++    +| ...-+.+...|..+....+ 
T Consensus       155 ~l~~~~~~~g~~VlV~GaG~~g~~a~~~a~-~~~g~~Vi~~~~~~~r~~~~~~----~G-a~~~i~~~~~~~~~~v~~~t  228 (348)
T 4eez_A          155 AIKVSGVKPGDWQVIFGAGGLGNLAIQYAK-NVFGAKVIAVDINQDKLNLAKK----IG-ADVTINSGDVNPVDEIKKIT  228 (348)
T ss_dssp             HHHHHTCCTTCEEEEECCSHHHHHHHHHHH-HTSCCEEEEEESCHHHHHHHHH----TT-CSEEEEC-CCCHHHHHHHHT
T ss_pred             eecccCCCCCCEEEEEcCCCccHHHHHHHH-HhCCCEEEEEECcHHHhhhhhh----cC-CeEEEeCCCCCHHHHhhhhc
Confidence            455567789999999999999999998888 4678999999999998877665    56 2223344334433222221 


Q ss_pred             --CCcceeehhhhccCChhHHHHHHHHHHhhccCCcEEEEee
Q 042119          201 --GEYDCIFLAALVGMSKEEKLTILGHIRKYMKDGGILLVRS  240 (286)
Q Consensus       201 --~~fD~V~~aalvg~~~~~k~~vl~~l~~~l~pgg~lv~r~  240 (286)
                        .++|.++.++.-       ...+....+.+++||++++-.
T Consensus       229 ~g~g~d~~~~~~~~-------~~~~~~~~~~l~~~G~~v~~g  263 (348)
T 4eez_A          229 GGLGVQSAIVCAVA-------RIAFEQAVASLKPMGKMVAVA  263 (348)
T ss_dssp             TSSCEEEEEECCSC-------HHHHHHHHHTEEEEEEEEECC
T ss_pred             CCCCceEEEEeccC-------cchhheeheeecCCceEEEEe
Confidence              257888766432       136777888999999998865

>3khk_A Type I restriction-modification system methylation subunit; structural genomics, PSI-2, protein structure initiative; 2.55A {Methanosarcina mazei}

Probab=97.78  E-value=1.6e-05  Score=78.83  Aligned_cols=110  Identities=9%  Similarity=-0.018  Sum_probs=75.5

Q ss_pred             CEEEEeccCCChhhHHHHHhhc---C-----------CCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEccccchh
Q 042119          132 KKVAFVGSGPMPLTSIIMAKHH---L-----------TSTHFDNFDIDEAANDVARSIVASDAEFEGRMKFLTRDIMEVK  197 (286)
Q Consensus       132 ~~VL~IG~G~lp~tai~lA~~~---~-----------~g~~V~~iDid~~ai~~Ar~~~~~~g~l~~~i~f~~~D~~~~~  197 (286)
                      .+|+|.+||++++.... ++..   .           ...+++|+|+++.++++|+.++.-.| +..++.+.++|....+
T Consensus       246 ~~VlDPaCGSG~fLi~a-~~~l~~~~~~~~~~~~~~~~~~~i~G~Eid~~~~~lA~~Nl~l~g-i~~~i~i~~gDtL~~~  323 (544)
T 3khk_A          246 GRVYDPAMGSGGFFVSS-DKFIEKHANVKHYNASEQKKQISVYGQESNPTTWKLAAMNMVIRG-IDFNFGKKNADSFLDD  323 (544)
T ss_dssp             EEEEESSCTTCHHHHHH-HHHHHHHHHHHTSCHHHHGGGEEEEECCCCHHHHHHHHHHHHHTT-CCCBCCSSSCCTTTSC
T ss_pred             CeEeCcccCcCcHHHHH-HHHHHHhccccccchHHHhhhceEEEEeCCHHHHHHHHHHHHHhC-CCcccceeccchhcCc
Confidence            49999999988765432 2210   0           15789999999999999999988888 5666666899986533


Q ss_pred             hc-CCCcceeehhhhcc---C-----------------------Chh--HHHHHHHHHHhhccCCcEEEEeecCc
Q 042119          198 EQ-LGEYDCIFLAALVG---M-----------------------SKE--EKLTILGHIRKYMKDGGILLVRSAKG  243 (286)
Q Consensus       198 ~~-l~~fD~V~~aalvg---~-----------------------~~~--~k~~vl~~l~~~l~pgg~lv~r~~~g  243 (286)
                      .. ...||+|+..---+   +                       +..  .-..+++++.+.|+|||++.+-.++|
T Consensus       324 ~~~~~~fD~Iv~NPPf~~~~~~~~~~~~d~r~~~g~~~~~~~~~~~~~~~~~~Fl~~~l~~Lk~gGr~aiVlP~g  398 (544)
T 3khk_A          324 QHPDLRADFVMTNPPFNMKDWWHEKLADDPRWTINTNGEKRILTPPTGNANFAWMLHMLYHLAPTGSMALLLANG  398 (544)
T ss_dssp             SCTTCCEEEEEECCCSSCCSCCCGGGTTCGGGEECCC--CEECCCCTTCTHHHHHHHHHHTEEEEEEEEEEEETH
T ss_pred             ccccccccEEEECCCcCCccccchhhhhhhhhhcCcccccccccCCCcchhHHHHHHHHHHhccCceEEEEecch
Confidence            22 24799997531111   1                       000  01258999999999999987765444

>3jv7_A ADH-A; dehydrogenase, nucleotide binding, rossmann-fold, oxidoreduc; HET: NAD; 2.00A {Rhodococcus ruber} PDB: 2xaa_A*

Probab=97.76  E-value=2e-05  Score=72.64  Aligned_cols=108  Identities=13%  Similarity=0.164  Sum_probs=74.9

Q ss_pred             HHHHHhc--CCCCCCEEEEeccCCChhhHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEccccchh
Q 042119          120 YTILSEN--GVVQPKKVAFVGSGPMPLTSIIMAKHHLTSTHFDNFDIDEAANDVARSIVASDAEFEGRMKFLTRDIMEVK  197 (286)
Q Consensus       120 ~~~l~~~--~~~~~~~VL~IG~G~lp~tai~lA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~g~l~~~i~f~~~D~~~~~  197 (286)
                      +.++.+.  .+.++++||.+|+|++|+.++.+|+. ..+++|+++|.+++..+++++    +|. ..-+.. ..|..+..
T Consensus       159 ~~~l~~~~~~~~~g~~vlv~GaG~vG~~a~qla~~-~g~~~Vi~~~~~~~~~~~~~~----lGa-~~~i~~-~~~~~~~v  231 (345)
T 3jv7_A          159 YHAISRVLPLLGPGSTAVVIGVGGLGHVGIQILRA-VSAARVIAVDLDDDRLALARE----VGA-DAAVKS-GAGAADAI  231 (345)
T ss_dssp             HHHHHTTGGGCCTTCEEEEECCSHHHHHHHHHHHH-HCCCEEEEEESCHHHHHHHHH----TTC-SEEEEC-STTHHHHH
T ss_pred             HHHHHHhccCCCCCCEEEEECCCHHHHHHHHHHHH-cCCCEEEEEcCCHHHHHHHHH----cCC-CEEEcC-CCcHHHHH
Confidence            3345453  56889999999999999999999994 448999999999999888765    562 211111 11211111


Q ss_pred             hcC---CCcceeehhhhccCChhHHHHHHHHHHhhccCCcEEEEeec
Q 042119          198 EQL---GEYDCIFLAALVGMSKEEKLTILGHIRKYMKDGGILLVRSA  241 (286)
Q Consensus       198 ~~l---~~fD~V~~aalvg~~~~~k~~vl~~l~~~l~pgg~lv~r~~  241 (286)
                      ..+   .++|+||.+.--       ...++...+.|+|||+++.-..
T Consensus       232 ~~~t~g~g~d~v~d~~G~-------~~~~~~~~~~l~~~G~iv~~G~  271 (345)
T 3jv7_A          232 RELTGGQGATAVFDFVGA-------QSTIDTAQQVVAVDGHISVVGI  271 (345)
T ss_dssp             HHHHGGGCEEEEEESSCC-------HHHHHHHHHHEEEEEEEEECSC
T ss_pred             HHHhCCCCCeEEEECCCC-------HHHHHHHHHHHhcCCEEEEECC
Confidence            111   279999965421       1367888999999999998753

>1vj0_A Alcohol dehydrogenase, zinc-containing; TM0436, structural G JCSG, PSI, protein structure initiative, joint center for S genomics; 2.00A {Thermotoga maritima} SCOP: b.35.1.2 c.2.1.1

Probab=97.75  E-value=2e-05  Score=73.91  Aligned_cols=103  Identities=18%  Similarity=0.184  Sum_probs=72.6

Q ss_pred             HHHhcC-CCCCCEEEEeccCCChhhHHHHHhhcCCC-cEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEc------cc
Q 042119          122 ILSENG-VVQPKKVAFVGSGPMPLTSIIMAKHHLTS-THFDNFDIDEAANDVARSIVASDAEFEGRMKFLTR------DI  193 (286)
Q Consensus       122 ~l~~~~-~~~~~~VL~IG~G~lp~tai~lA~~~~~g-~~V~~iDid~~ai~~Ar~~~~~~g~l~~~i~f~~~------D~  193 (286)
                      ++.+.. +.++++||.+|+|++|+.++.+|+.  .| ++|+++|.+++..+.+++    +|.  +.  ++..      |.
T Consensus       186 al~~~~~~~~g~~VlV~GaG~vG~~aiqlak~--~Ga~~Vi~~~~~~~~~~~~~~----lGa--~~--vi~~~~~~~~~~  255 (380)
T 1vj0_A          186 AFDEYPESFAGKTVVIQGAGPLGLFGVVIARS--LGAENVIVIAGSPNRLKLAEE----IGA--DL--TLNRRETSVEER  255 (380)
T ss_dssp             HHHTCSSCCBTCEEEEECCSHHHHHHHHHHHH--TTBSEEEEEESCHHHHHHHHH----TTC--SE--EEETTTSCHHHH
T ss_pred             HHHhcCCCCCCCEEEEECcCHHHHHHHHHHHH--cCCceEEEEcCCHHHHHHHHH----cCC--cE--EEeccccCcchH
Confidence            444556 7889999999999999999999994  68 599999999999888764    562  21  2221      11


Q ss_pred             cc-hhhcC--CCcceeehhhhccCChhHHHHHHHHHHhhccCCcEEEEeec
Q 042119          194 ME-VKEQL--GEYDCIFLAALVGMSKEEKLTILGHIRKYMKDGGILLVRSA  241 (286)
Q Consensus       194 ~~-~~~~l--~~fD~V~~aalvg~~~~~k~~vl~~l~~~l~pgg~lv~r~~  241 (286)
                      .+ +....  .++|+||.+.-.  .     ..++...+.|+|||+++.-..
T Consensus       256 ~~~v~~~~~g~g~Dvvid~~g~--~-----~~~~~~~~~l~~~G~iv~~G~  299 (380)
T 1vj0_A          256 RKAIMDITHGRGADFILEATGD--S-----RALLEGSELLRRGGFYSVAGV  299 (380)
T ss_dssp             HHHHHHHTTTSCEEEEEECSSC--T-----THHHHHHHHEEEEEEEEECCC
T ss_pred             HHHHHHHhCCCCCcEEEECCCC--H-----HHHHHHHHHHhcCCEEEEEec
Confidence            11 11111  269999966432  1     256778899999999988653

>2vhw_A Alanine dehydrogenase; NAD, secreted, oxidoreductase; HET: NAI; 2.0A {Mycobacterium tuberculosis} PDB: 2vhx_A* 2vhy_A 2vhz_A* 2vhv_A* 2voe_A 2voj_A*

Probab=97.72  E-value=1.8e-05  Score=74.75  Aligned_cols=103  Identities=18%  Similarity=0.215  Sum_probs=70.0

Q ss_pred             CCCCEEEEeccCCChhhHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEccccchhhcCCCcceeeh
Q 042119          129 VQPKKVAFVGSGPMPLTSIIMAKHHLTSTHFDNFDIDEAANDVARSIVASDAEFEGRMKFLTRDIMEVKEQLGEYDCIFL  208 (286)
Q Consensus       129 ~~~~~VL~IG~G~lp~tai~lA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~g~l~~~i~f~~~D~~~~~~~l~~fD~V~~  208 (286)
                      -++++|+.+|+|++|..+..+++.  .|++|+++|++++..+.+++.   .|   ..+.....+..++...+.++|+|+.
T Consensus       166 l~g~~V~ViG~G~iG~~~a~~a~~--~Ga~V~~~d~~~~~l~~~~~~---~g---~~~~~~~~~~~~l~~~l~~aDvVi~  237 (377)
T 2vhw_A          166 VEPADVVVIGAGTAGYNAARIANG--MGATVTVLDINIDKLRQLDAE---FC---GRIHTRYSSAYELEGAVKRADLVIG  237 (377)
T ss_dssp             BCCCEEEEECCSHHHHHHHHHHHH--TTCEEEEEESCHHHHHHHHHH---TT---TSSEEEECCHHHHHHHHHHCSEEEE
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHh--CCCEEEEEeCCHHHHHHHHHh---cC---CeeEeccCCHHHHHHHHcCCCEEEE
Confidence            468999999999999999988884  788999999999988777654   34   2332322222223333346899998


Q ss_pred             hhhccCChhHHHHHHHHHHhhccCCcEEEEee
Q 042119          209 AALVGMSKEEKLTILGHIRKYMKDGGILLVRS  240 (286)
Q Consensus       209 aalvg~~~~~k~~vl~~l~~~l~pgg~lv~r~  240 (286)
                      +..+... +.+.-+.+...+.|+|||+++.-.
T Consensus       238 ~~~~p~~-~t~~li~~~~l~~mk~g~~iV~va  268 (377)
T 2vhw_A          238 AVLVPGA-KAPKLVSNSLVAHMKPGAVLVDIA  268 (377)
T ss_dssp             CCCCTTS-CCCCCBCHHHHTTSCTTCEEEEGG
T ss_pred             CCCcCCC-CCcceecHHHHhcCCCCcEEEEEe
Confidence            6554221 111112456778899999988765

>3uog_A Alcohol dehydrogenase; structural genomics, protein structure initiative, PSI-biolo YORK structural genomics research consortium; 2.20A {Sinorhizobium meliloti 1021}

Probab=97.69  E-value=1.8e-05  Score=73.73  Aligned_cols=99  Identities=20%  Similarity=0.095  Sum_probs=71.4

Q ss_pred             hcCCCCCCEEEEeccCCChhhHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEccccchhh------
Q 042119          125 ENGVVQPKKVAFVGSGPMPLTSIIMAKHHLTSTHFDNFDIDEAANDVARSIVASDAEFEGRMKFLTRDIMEVKE------  198 (286)
Q Consensus       125 ~~~~~~~~~VL~IG~G~lp~tai~lA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~g~l~~~i~f~~~D~~~~~~------  198 (286)
                      ...++++++||.+|+|++|+.++.+|+.  .|++|+++|.+++..+++++    +|.  + ..+. .+..++..      
T Consensus       184 ~~~~~~g~~VlV~G~G~vG~~a~qla~~--~Ga~Vi~~~~~~~~~~~~~~----lGa--~-~vi~-~~~~~~~~~v~~~~  253 (363)
T 3uog_A          184 KGHLRAGDRVVVQGTGGVALFGLQIAKA--TGAEVIVTSSSREKLDRAFA----LGA--D-HGIN-RLEEDWVERVYALT  253 (363)
T ss_dssp             TTCCCTTCEEEEESSBHHHHHHHHHHHH--TTCEEEEEESCHHHHHHHHH----HTC--S-EEEE-TTTSCHHHHHHHHH
T ss_pred             hcCCCCCCEEEEECCCHHHHHHHHHHHH--cCCEEEEEecCchhHHHHHH----cCC--C-EEEc-CCcccHHHHHHHHh
Confidence            4456899999999999999999999994  78999999999999888766    462  2 1122 22111111      


Q ss_pred             cCCCcceeehhhhccCChhHHHHHHHHHHhhccCCcEEEEeec
Q 042119          199 QLGEYDCIFLAALVGMSKEEKLTILGHIRKYMKDGGILLVRSA  241 (286)
Q Consensus       199 ~l~~fD~V~~aalvg~~~~~k~~vl~~l~~~l~pgg~lv~r~~  241 (286)
                      .-.++|+||.++- +       ..++...+.|+|||++++-..
T Consensus       254 ~g~g~D~vid~~g-~-------~~~~~~~~~l~~~G~iv~~G~  288 (363)
T 3uog_A          254 GDRGADHILEIAG-G-------AGLGQSLKAVAPDGRISVIGV  288 (363)
T ss_dssp             TTCCEEEEEEETT-S-------SCHHHHHHHEEEEEEEEEECC
T ss_pred             CCCCceEEEECCC-h-------HHHHHHHHHhhcCCEEEEEec
Confidence            1126999996643 1       246678889999999988753

>2cf5_A Atccad5, CAD, cinnamyl alcohol dehydrogenase; lignin biosynthesis, metal-binding, NADP, oxidoreductase, zinc; 2.0A {Arabidopsis thaliana} PDB: 2cf6_A*

Probab=97.68  E-value=3.4e-05  Score=71.69  Aligned_cols=105  Identities=16%  Similarity=0.164  Sum_probs=72.3

Q ss_pred             HHHHhcCCC-CCCEEEEeccCCChhhHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEccccchhhc
Q 042119          121 TILSENGVV-QPKKVAFVGSGPMPLTSIIMAKHHLTSTHFDNFDIDEAANDVARSIVASDAEFEGRMKFLTRDIMEVKEQ  199 (286)
Q Consensus       121 ~~l~~~~~~-~~~~VL~IG~G~lp~tai~lA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~g~l~~~i~f~~~D~~~~~~~  199 (286)
                      .++.+.... ++++||.+|+|++|+.++.+|+.  .|++|+++|.+++..+.+++   ++|.  +.+ +...|...+...
T Consensus       170 ~~l~~~~~~~~g~~VlV~GaG~vG~~a~qlak~--~Ga~Vi~~~~~~~~~~~~~~---~lGa--~~v-i~~~~~~~~~~~  241 (357)
T 2cf5_A          170 SPLSHFGLKQPGLRGGILGLGGVGHMGVKIAKA--MGHHVTVISSSNKKREEALQ---DLGA--DDY-VIGSDQAKMSEL  241 (357)
T ss_dssp             HHHHHTSTTSTTCEEEEECCSHHHHHHHHHHHH--HTCEEEEEESSTTHHHHHHT---TSCC--SCE-EETTCHHHHHHS
T ss_pred             HHHHhcCCCCCCCEEEEECCCHHHHHHHHHHHH--CCCeEEEEeCChHHHHHHHH---HcCC--cee-eccccHHHHHHh
Confidence            344455667 89999999999999999999994  68999999999988777652   3662  222 222221112222


Q ss_pred             CCCcceeehhhhccCChhHHHHHHHHHHhhccCCcEEEEee
Q 042119          200 LGEYDCIFLAALVGMSKEEKLTILGHIRKYMKDGGILLVRS  240 (286)
Q Consensus       200 l~~fD~V~~aalvg~~~~~k~~vl~~l~~~l~pgg~lv~r~  240 (286)
                      .+++|+||.+.-.  .     ..++...+.|+|||+++.-.
T Consensus       242 ~~g~D~vid~~g~--~-----~~~~~~~~~l~~~G~iv~~G  275 (357)
T 2cf5_A          242 ADSLDYVIDTVPV--H-----HALEPYLSLLKLDGKLILMG  275 (357)
T ss_dssp             TTTEEEEEECCCS--C-----CCSHHHHTTEEEEEEEEECS
T ss_pred             cCCCCEEEECCCC--h-----HHHHHHHHHhccCCEEEEeC
Confidence            2479999965431  1     13456778999999998864

>1piw_A Hypothetical zinc-type alcohol dehydrogenase- like protein in PRE5-FET4 intergenic...; ADH topology, NADP(H)dependent, oxidoreductase; HET: NAP; 3.00A {Saccharomyces cerevisiae} SCOP: b.35.1.2 c.2.1.1 PDB: 1ps0_A* 1q1n_A

Probab=97.67  E-value=9.7e-06  Score=75.38  Aligned_cols=106  Identities=21%  Similarity=0.169  Sum_probs=73.0

Q ss_pred             HHHHhcCCCCCCEEEEeccCCChhhHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEccccchhhcC
Q 042119          121 TILSENGVVQPKKVAFVGSGPMPLTSIIMAKHHLTSTHFDNFDIDEAANDVARSIVASDAEFEGRMKFLTRDIMEVKEQL  200 (286)
Q Consensus       121 ~~l~~~~~~~~~~VL~IG~G~lp~tai~lA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~g~l~~~i~f~~~D~~~~~~~l  200 (286)
                      .++.+..+.++++||.+|+|++|+.++.+|+.  .|++|+++|.+++..+.+++    +|.  +. .+-..+..++...+
T Consensus       170 ~~l~~~~~~~g~~VlV~GaG~vG~~~~qlak~--~Ga~Vi~~~~~~~~~~~~~~----lGa--~~-v~~~~~~~~~~~~~  240 (360)
T 1piw_A          170 SPLVRNGCGPGKKVGIVGLGGIGSMGTLISKA--MGAETYVISRSSRKREDAMK----MGA--DH-YIATLEEGDWGEKY  240 (360)
T ss_dssp             HHHHHTTCSTTCEEEEECCSHHHHHHHHHHHH--HTCEEEEEESSSTTHHHHHH----HTC--SE-EEEGGGTSCHHHHS
T ss_pred             HHHHHcCCCCCCEEEEECCCHHHHHHHHHHHH--CCCEEEEEcCCHHHHHHHHH----cCC--CE-EEcCcCchHHHHHh
Confidence            44555667899999999999999999999994  68999999999999888776    462  21 12111110222222


Q ss_pred             -CCcceeehhhhccCChhHHHHHHHHHHhhccCCcEEEEee
Q 042119          201 -GEYDCIFLAALVGMSKEEKLTILGHIRKYMKDGGILLVRS  240 (286)
Q Consensus       201 -~~fD~V~~aalvg~~~~~k~~vl~~l~~~l~pgg~lv~r~  240 (286)
                       ++||+||.+.-.. +    ...++...+.|+|||+++.-.
T Consensus       241 ~~~~D~vid~~g~~-~----~~~~~~~~~~l~~~G~iv~~g  276 (360)
T 1piw_A          241 FDTFDLIVVCASSL-T----DIDFNIMPKAMKVGGRIVSIS  276 (360)
T ss_dssp             CSCEEEEEECCSCS-T----TCCTTTGGGGEEEEEEEEECC
T ss_pred             hcCCCEEEECCCCC-c----HHHHHHHHHHhcCCCEEEEec
Confidence             4799999654310 0    124556788999999998765

>1e3i_A Alcohol dehydrogenase, class II; HET: NAD; 2.08A {Mus musculus} SCOP: b.35.1.2 c.2.1.1 PDB: 1e3e_A* 1e3l_A* 3cos_A*

Probab=97.67  E-value=4.5e-05  Score=71.17  Aligned_cols=100  Identities=20%  Similarity=0.139  Sum_probs=70.8

Q ss_pred             hcCCCCCCEEEEeccCCChhhHHHHHhhcCCCc-EEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEc----cccchhhc
Q 042119          125 ENGVVQPKKVAFVGSGPMPLTSIIMAKHHLTST-HFDNFDIDEAANDVARSIVASDAEFEGRMKFLTR----DIMEVKEQ  199 (286)
Q Consensus       125 ~~~~~~~~~VL~IG~G~lp~tai~lA~~~~~g~-~V~~iDid~~ai~~Ar~~~~~~g~l~~~i~f~~~----D~~~~~~~  199 (286)
                      ...+.++++||.+|+|++|+.++.+|+.  .|+ +|+++|.+++..+.+++    +|.  +. .+...    |..+....
T Consensus       190 ~~~~~~g~~VlV~GaG~vG~~aiqlak~--~Ga~~Vi~~~~~~~~~~~a~~----lGa--~~-vi~~~~~~~~~~~~v~~  260 (376)
T 1e3i_A          190 TAKVTPGSTCAVFGLGCVGLSAIIGCKI--AGASRIIAIDINGEKFPKAKA----LGA--TD-CLNPRELDKPVQDVITE  260 (376)
T ss_dssp             TSCCCTTCEEEEECCSHHHHHHHHHHHH--TTCSEEEEECSCGGGHHHHHH----TTC--SE-EECGGGCSSCHHHHHHH
T ss_pred             hcCCCCCCEEEEECCCHHHHHHHHHHHH--cCCCeEEEEcCCHHHHHHHHH----hCC--cE-EEccccccchHHHHHHH
Confidence            3456889999999999999999999994  688 89999999999887765    562  21 12111    11111111


Q ss_pred             --CCCcceeehhhhccCChhHHHHHHHHHHhhccCC-cEEEEee
Q 042119          200 --LGEYDCIFLAALVGMSKEEKLTILGHIRKYMKDG-GILLVRS  240 (286)
Q Consensus       200 --l~~fD~V~~aalvg~~~~~k~~vl~~l~~~l~pg-g~lv~r~  240 (286)
                        -+++|+||.+.-.       ...++...+.+++| |++++-.
T Consensus       261 ~~~~g~Dvvid~~G~-------~~~~~~~~~~l~~~~G~iv~~G  297 (376)
T 1e3i_A          261 LTAGGVDYSLDCAGT-------AQTLKAAVDCTVLGWGSCTVVG  297 (376)
T ss_dssp             HHTSCBSEEEESSCC-------HHHHHHHHHTBCTTTCEEEECC
T ss_pred             HhCCCccEEEECCCC-------HHHHHHHHHHhhcCCCEEEEEC
Confidence              1379999965421       13677888999999 9998754

>3ip1_A Alcohol dehydrogenase, zinc-containing; structural genomics, metal-binding, oxidoreductase, PSI-2, protein structure initiative; 2.09A {Thermotoga maritima}

Probab=97.66  E-value=4.2e-05  Score=72.26  Aligned_cols=105  Identities=14%  Similarity=0.136  Sum_probs=67.3

Q ss_pred             CCCCCCEEEEeccCCChhhHHHHHhhcCCCc-EEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEccccchhhcC---CC
Q 042119          127 GVVQPKKVAFVGSGPMPLTSIIMAKHHLTST-HFDNFDIDEAANDVARSIVASDAEFEGRMKFLTRDIMEVKEQL---GE  202 (286)
Q Consensus       127 ~~~~~~~VL~IG~G~lp~tai~lA~~~~~g~-~V~~iDid~~ai~~Ar~~~~~~g~l~~~i~f~~~D~~~~~~~l---~~  202 (286)
                      .+.++++||.+|+|++|+.++.+|+.  .|+ +|+++|.+++..+++++    +|. ..-+.....|..+....+   .+
T Consensus       210 ~~~~g~~VlV~GaG~vG~~aiqlak~--~Ga~~Vi~~~~~~~~~~~~~~----lGa-~~vi~~~~~~~~~~i~~~t~g~g  282 (404)
T 3ip1_A          210 GIRPGDNVVILGGGPIGLAAVAILKH--AGASKVILSEPSEVRRNLAKE----LGA-DHVIDPTKENFVEAVLDYTNGLG  282 (404)
T ss_dssp             CCCTTCEEEEECCSHHHHHHHHHHHH--TTCSEEEEECSCHHHHHHHHH----HTC-SEEECTTTSCHHHHHHHHTTTCC
T ss_pred             CCCCCCEEEEECCCHHHHHHHHHHHH--cCCCEEEEECCCHHHHHHHHH----cCC-CEEEcCCCCCHHHHHHHHhCCCC
Confidence            46889999999999999999999994  688 99999999999988876    462 111111112221111111   26


Q ss_pred             cceeehhhhccCChhHHHHHHHHHHhhccCCcEEEEee
Q 042119          203 YDCIFLAALVGMSKEEKLTILGHIRKYMKDGGILLVRS  240 (286)
Q Consensus       203 fD~V~~aalvg~~~~~k~~vl~~l~~~l~pgg~lv~r~  240 (286)
                      +|+||.+.-.  ....-..+++.+.+.+++||++++-.
T Consensus       283 ~D~vid~~g~--~~~~~~~~~~~l~~~~~~~G~iv~~G  318 (404)
T 3ip1_A          283 AKLFLEATGV--PQLVWPQIEEVIWRARGINATVAIVA  318 (404)
T ss_dssp             CSEEEECSSC--HHHHHHHHHHHHHHCSCCCCEEEECS
T ss_pred             CCEEEECCCC--cHHHHHHHHHHHHhccCCCcEEEEeC
Confidence            9999965421  10111223333334449999999865

>1yqd_A Sinapyl alcohol dehydrogenase; lignin, monolignol, oxidoreductase, zinc-dependent, plant DE biosynthesis, substrate inhibition; HET: NAP; 1.65A {Populus tremuloides} PDB: 1yqx_A*

Probab=97.65  E-value=6.4e-05  Score=70.07  Aligned_cols=105  Identities=17%  Similarity=0.182  Sum_probs=71.8

Q ss_pred             HHHHhcCCC-CCCEEEEeccCCChhhHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEccccchhhc
Q 042119          121 TILSENGVV-QPKKVAFVGSGPMPLTSIIMAKHHLTSTHFDNFDIDEAANDVARSIVASDAEFEGRMKFLTRDIMEVKEQ  199 (286)
Q Consensus       121 ~~l~~~~~~-~~~~VL~IG~G~lp~tai~lA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~g~l~~~i~f~~~D~~~~~~~  199 (286)
                      .++.+.+.. ++++||.+|+|++|..++.+|+.  .|++|+++|.+++..+.+++   ++|.  + ..+...|...+...
T Consensus       177 ~al~~~~~~~~g~~VlV~GaG~vG~~~~q~a~~--~Ga~Vi~~~~~~~~~~~~~~---~lGa--~-~v~~~~~~~~~~~~  248 (366)
T 1yqd_A          177 SPLKYFGLDEPGKHIGIVGLGGLGHVAVKFAKA--FGSKVTVISTSPSKKEEALK---NFGA--D-SFLVSRDQEQMQAA  248 (366)
T ss_dssp             HHHHHTTCCCTTCEEEEECCSHHHHHHHHHHHH--TTCEEEEEESCGGGHHHHHH---TSCC--S-EEEETTCHHHHHHT
T ss_pred             HHHHhcCcCCCCCEEEEECCCHHHHHHHHHHHH--CCCEEEEEeCCHHHHHHHHH---hcCC--c-eEEeccCHHHHHHh
Confidence            345555667 89999999999999999999994  78999999999988777653   3662  2 22222221112222


Q ss_pred             CCCcceeehhhhccCChhHHHHHHHHHHhhccCCcEEEEee
Q 042119          200 LGEYDCIFLAALVGMSKEEKLTILGHIRKYMKDGGILLVRS  240 (286)
Q Consensus       200 l~~fD~V~~aalvg~~~~~k~~vl~~l~~~l~pgg~lv~r~  240 (286)
                      .+++|+||.+.-.  .     ..++...+.|++||+++.-.
T Consensus       249 ~~~~D~vid~~g~--~-----~~~~~~~~~l~~~G~iv~~g  282 (366)
T 1yqd_A          249 AGTLDGIIDTVSA--V-----HPLLPLFGLLKSHGKLILVG  282 (366)
T ss_dssp             TTCEEEEEECCSS--C-----CCSHHHHHHEEEEEEEEECC
T ss_pred             hCCCCEEEECCCc--H-----HHHHHHHHHHhcCCEEEEEc
Confidence            2479999966432  1     12345677889999988764

>3fwz_A Inner membrane protein YBAL; TRKA-N domain, E.coli, structural genomics, PSI-2, Pro structure initiative; HET: MSE AMP; 1.79A {Escherichia coli k-12}

Probab=97.65  E-value=0.00023  Score=57.20  Aligned_cols=95  Identities=8%  Similarity=-0.001  Sum_probs=66.6

Q ss_pred             CCEEEEeccCCChhhHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEccccchh--h--cCCCccee
Q 042119          131 PKKVAFVGSGPMPLTSIIMAKHHLTSTHFDNFDIDEAANDVARSIVASDAEFEGRMKFLTRDIMEVK--E--QLGEYDCI  206 (286)
Q Consensus       131 ~~~VL~IG~G~lp~tai~lA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~g~l~~~i~f~~~D~~~~~--~--~l~~fD~V  206 (286)
                      ..+|+.+|+|.+|.......+.  .|.+|+++|.|++.++.+++    .|     +.++.+|+.+..  .  ...++|+|
T Consensus         7 ~~~viIiG~G~~G~~la~~L~~--~g~~v~vid~~~~~~~~~~~----~g-----~~~i~gd~~~~~~l~~a~i~~ad~v   75 (140)
T 3fwz_A            7 CNHALLVGYGRVGSLLGEKLLA--SDIPLVVIETSRTRVDELRE----RG-----VRAVLGNAANEEIMQLAHLECAKWL   75 (140)
T ss_dssp             CSCEEEECCSHHHHHHHHHHHH--TTCCEEEEESCHHHHHHHHH----TT-----CEEEESCTTSHHHHHHTTGGGCSEE
T ss_pred             CCCEEEECcCHHHHHHHHHHHH--CCCCEEEEECCHHHHHHHHH----cC-----CCEEECCCCCHHHHHhcCcccCCEE
Confidence            4689999999988776555442  68999999999999877654    45     578889986532  1  23468988


Q ss_pred             ehhhhccCChhHHHHHHHHHHhhccCCcEEEEee
Q 042119          207 FLAALVGMSKEEKLTILGHIRKYMKDGGILLVRS  240 (286)
Q Consensus       207 ~~aalvg~~~~~k~~vl~~l~~~l~pgg~lv~r~  240 (286)
                      +++.-  -  ......+-...+.+.|+..++.|.
T Consensus        76 i~~~~--~--~~~n~~~~~~a~~~~~~~~iiar~  105 (140)
T 3fwz_A           76 ILTIP--N--GYEAGEIVASARAKNPDIEIIARA  105 (140)
T ss_dssp             EECCS--C--HHHHHHHHHHHHHHCSSSEEEEEE
T ss_pred             EEECC--C--hHHHHHHHHHHHHHCCCCeEEEEE
Confidence            86532  1  222223445667788999999886

>3tqh_A Quinone oxidoreductase; HET: NDP; 2.44A {Coxiella burnetii}

Probab=97.64  E-value=0.00018  Score=65.53  Aligned_cols=101  Identities=13%  Similarity=0.074  Sum_probs=70.1

Q ss_pred             HHHHhcCCCCCCEEEEec-cCCChhhHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEccccc-hhh
Q 042119          121 TILSENGVVQPKKVAFVG-SGPMPLTSIIMAKHHLTSTHFDNFDIDEAANDVARSIVASDAEFEGRMKFLTRDIME-VKE  198 (286)
Q Consensus       121 ~~l~~~~~~~~~~VL~IG-~G~lp~tai~lA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~g~l~~~i~f~~~D~~~-~~~  198 (286)
                      .++.+..++++++||.+| +|++|+.++.+|+.  .|++|++++ +++..++++    ++|. ..   .+..+-.+ +..
T Consensus       143 ~al~~~~~~~g~~vlV~Ga~G~vG~~a~q~a~~--~Ga~vi~~~-~~~~~~~~~----~lGa-~~---~i~~~~~~~~~~  211 (321)
T 3tqh_A          143 QALNQAEVKQGDVVLIHAGAGGVGHLAIQLAKQ--KGTTVITTA-SKRNHAFLK----ALGA-EQ---CINYHEEDFLLA  211 (321)
T ss_dssp             HHHHHTTCCTTCEEEESSTTSHHHHHHHHHHHH--TTCEEEEEE-CHHHHHHHH----HHTC-SE---EEETTTSCHHHH
T ss_pred             HHHHhcCCCCCCEEEEEcCCcHHHHHHHHHHHH--cCCEEEEEe-ccchHHHHH----HcCC-CE---EEeCCCcchhhh
Confidence            344556779999999997 99999999999994  789999998 455455544    4672 21   22222122 344


Q ss_pred             cCCCcceeehhhhccCChhHHHHHHHHHHhhccCCcEEEEee
Q 042119          199 QLGEYDCIFLAALVGMSKEEKLTILGHIRKYMKDGGILLVRS  240 (286)
Q Consensus       199 ~l~~fD~V~~aalvg~~~~~k~~vl~~l~~~l~pgg~lv~r~  240 (286)
                      ...++|+||.+.-      .  ..++...+.|++||+++.-.
T Consensus       212 ~~~g~D~v~d~~g------~--~~~~~~~~~l~~~G~iv~~g  245 (321)
T 3tqh_A          212 ISTPVDAVIDLVG------G--DVGIQSIDCLKETGCIVSVP  245 (321)
T ss_dssp             CCSCEEEEEESSC------H--HHHHHHGGGEEEEEEEEECC
T ss_pred             hccCCCEEEECCC------c--HHHHHHHHhccCCCEEEEeC
Confidence            4568999996542      1  12377889999999998753

>3goh_A Alcohol dehydrogenase, zinc-containing; NP_718042.1, alcohol dehydrogenase superfamily protein, ALCO dehydrogenase groes-like domain; 1.55A {Shewanella oneidensis}

Probab=97.64  E-value=5.4e-05  Score=68.84  Aligned_cols=96  Identities=16%  Similarity=0.172  Sum_probs=68.3

Q ss_pred             HHHhcCCCCCCEEEEeccCCChhhHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEccccchhhcCC
Q 042119          122 ILSENGVVQPKKVAFVGSGPMPLTSIIMAKHHLTSTHFDNFDIDEAANDVARSIVASDAEFEGRMKFLTRDIMEVKEQLG  201 (286)
Q Consensus       122 ~l~~~~~~~~~~VL~IG~G~lp~tai~lA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~g~l~~~i~f~~~D~~~~~~~l~  201 (286)
                      ++.+..++++++||.+|+|++|+.++.+|+.  .|++|+++| +++..+++++    +|.  +.  ++ -|..++   -.
T Consensus       134 al~~~~~~~g~~VlV~GaG~vG~~a~qlak~--~Ga~Vi~~~-~~~~~~~~~~----lGa--~~--v~-~d~~~v---~~  198 (315)
T 3goh_A          134 AFEKIPLTKQREVLIVGFGAVNNLLTQMLNN--AGYVVDLVS-ASLSQALAAK----RGV--RH--LY-REPSQV---TQ  198 (315)
T ss_dssp             HHTTSCCCSCCEEEEECCSHHHHHHHHHHHH--HTCEEEEEC-SSCCHHHHHH----HTE--EE--EE-SSGGGC---CS
T ss_pred             HHhhcCCCCCCEEEEECCCHHHHHHHHHHHH--cCCEEEEEE-ChhhHHHHHH----cCC--CE--EE-cCHHHh---CC
Confidence            4445567899999999999999999999994  689999999 9998888766    562  11  11 242222   24


Q ss_pred             CcceeehhhhccCChhHHHHHHHHHHhhccCCcEEEEee
Q 042119          202 EYDCIFLAALVGMSKEEKLTILGHIRKYMKDGGILLVRS  240 (286)
Q Consensus       202 ~fD~V~~aalvg~~~~~k~~vl~~l~~~l~pgg~lv~r~  240 (286)
                      +||+||.+.--     +   .+....+.|+|||+++.-.
T Consensus       199 g~Dvv~d~~g~-----~---~~~~~~~~l~~~G~~v~~g  229 (315)
T 3goh_A          199 KYFAIFDAVNS-----Q---NAAALVPSLKANGHIICIQ  229 (315)
T ss_dssp             CEEEEECC---------------TTGGGEEEEEEEEEEC
T ss_pred             CccEEEECCCc-----h---hHHHHHHHhcCCCEEEEEe
Confidence            79999965421     1   2356788999999988763

>3uko_A Alcohol dehydrogenase class-3; alcohol dehydrogenase III, homodimer, reduction of GSNO, NAD binding, oxidoreductase; HET: NAD SO4; 1.40A {Arabidopsis thaliana}

Probab=97.64  E-value=2.8e-05  Score=72.67  Aligned_cols=103  Identities=20%  Similarity=0.209  Sum_probs=71.5

Q ss_pred             HhcCCCCCCEEEEeccCCChhhHHHHHhhcCCCc-EEEEEeCChHHHHHHHHHHHhcCCCCCCeEEE--EccccchhhcC
Q 042119          124 SENGVVQPKKVAFVGSGPMPLTSIIMAKHHLTST-HFDNFDIDEAANDVARSIVASDAEFEGRMKFL--TRDIMEVKEQL  200 (286)
Q Consensus       124 ~~~~~~~~~~VL~IG~G~lp~tai~lA~~~~~g~-~V~~iDid~~ai~~Ar~~~~~~g~l~~~i~f~--~~D~~~~~~~l  200 (286)
                      .+..+.++++||.+|+|++|+.++.+|+.  .|+ +|+++|.+++..++|++    +|. ..-+.+.  ..|..+....+
T Consensus       187 ~~~~~~~g~~VlV~GaG~vG~~a~q~a~~--~Ga~~Vi~~~~~~~~~~~a~~----lGa-~~vi~~~~~~~~~~~~i~~~  259 (378)
T 3uko_A          187 NTAKVEPGSNVAIFGLGTVGLAVAEGAKT--AGASRIIGIDIDSKKYETAKK----FGV-NEFVNPKDHDKPIQEVIVDL  259 (378)
T ss_dssp             TTTCCCTTCCEEEECCSHHHHHHHHHHHH--HTCSCEEEECSCTTHHHHHHT----TTC-CEEECGGGCSSCHHHHHHHH
T ss_pred             hhcCCCCCCEEEEECCCHHHHHHHHHHHH--cCCCeEEEEcCCHHHHHHHHH----cCC-cEEEccccCchhHHHHHHHh
Confidence            34567899999999999999999999994  687 89999999999887764    562 2111111  11111111111


Q ss_pred             --CCcceeehhhhccCChhHHHHHHHHHHhhccCC-cEEEEee
Q 042119          201 --GEYDCIFLAALVGMSKEEKLTILGHIRKYMKDG-GILLVRS  240 (286)
Q Consensus       201 --~~fD~V~~aalvg~~~~~k~~vl~~l~~~l~pg-g~lv~r~  240 (286)
                        ++||+||.+.-.       ...++...+.+++| |++++-.
T Consensus       260 ~~gg~D~vid~~g~-------~~~~~~~~~~l~~g~G~iv~~G  295 (378)
T 3uko_A          260 TDGGVDYSFECIGN-------VSVMRAALECCHKGWGTSVIVG  295 (378)
T ss_dssp             TTSCBSEEEECSCC-------HHHHHHHHHTBCTTTCEEEECS
T ss_pred             cCCCCCEEEECCCC-------HHHHHHHHHHhhccCCEEEEEc
Confidence              379999966431       14677888999997 9988865

>1p0f_A NADP-dependent alcohol dehydrogenase; ADH topology, NADP(H)-dependent, oxidoreductase; HET: NAP; 1.80A {Rana perezi} SCOP: b.35.1.2 c.2.1.1 PDB: 1p0c_A*

Probab=97.64  E-value=4.2e-05  Score=71.30  Aligned_cols=100  Identities=16%  Similarity=0.107  Sum_probs=71.0

Q ss_pred             hcCCCCCCEEEEeccCCChhhHHHHHhhcCCCc-EEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEc----cccchhhc
Q 042119          125 ENGVVQPKKVAFVGSGPMPLTSIIMAKHHLTST-HFDNFDIDEAANDVARSIVASDAEFEGRMKFLTR----DIMEVKEQ  199 (286)
Q Consensus       125 ~~~~~~~~~VL~IG~G~lp~tai~lA~~~~~g~-~V~~iDid~~ai~~Ar~~~~~~g~l~~~i~f~~~----D~~~~~~~  199 (286)
                      ...++++++||.+|+|++|+.++.+|+.  .|+ +|+++|.+++..+++++    +|.  +. .+...    |..+....
T Consensus       186 ~~~~~~g~~VlV~GaG~vG~~aiqlak~--~Ga~~Vi~~~~~~~~~~~a~~----lGa--~~-vi~~~~~~~~~~~~i~~  256 (373)
T 1p0f_A          186 TAKVTPGSTCAVFGLGGVGFSAIVGCKA--AGASRIIGVGTHKDKFPKAIE----LGA--TE-CLNPKDYDKPIYEVICE  256 (373)
T ss_dssp             TTCCCTTCEEEEECCSHHHHHHHHHHHH--HTCSEEEEECSCGGGHHHHHH----TTC--SE-EECGGGCSSCHHHHHHH
T ss_pred             ccCCCCCCEEEEECCCHHHHHHHHHHHH--cCCCeEEEECCCHHHHHHHHH----cCC--cE-EEecccccchHHHHHHH
Confidence            4567889999999999999999999994  577 89999999999888765    562  21 12111    11111111


Q ss_pred             C--CCcceeehhhhccCChhHHHHHHHHHHhhccCC-cEEEEee
Q 042119          200 L--GEYDCIFLAALVGMSKEEKLTILGHIRKYMKDG-GILLVRS  240 (286)
Q Consensus       200 l--~~fD~V~~aalvg~~~~~k~~vl~~l~~~l~pg-g~lv~r~  240 (286)
                      .  ++||+||.+.-.       ...++...+.|++| |+++.-.
T Consensus       257 ~t~gg~Dvvid~~g~-------~~~~~~~~~~l~~~~G~iv~~G  293 (373)
T 1p0f_A          257 KTNGGVDYAVECAGR-------IETMMNALQSTYCGSGVTVVLG  293 (373)
T ss_dssp             HTTSCBSEEEECSCC-------HHHHHHHHHTBCTTTCEEEECC
T ss_pred             HhCCCCCEEEECCCC-------HHHHHHHHHHHhcCCCEEEEEc
Confidence            1  379999965421       13677888999999 9998764

>2c0c_A Zinc binding alcohol dehydrogenase, domain containing 2; oxidoreductase, quinone oxidoreductase, medium-chain dehydrogenase/reductase; HET: NAP; 1.45A {Homo sapiens} PDB: 2x1h_A* 2x7h_A* 2wek_A*

Probab=97.64  E-value=7.1e-05  Score=69.69  Aligned_cols=98  Identities=15%  Similarity=0.158  Sum_probs=70.3

Q ss_pred             cCCCCCCEEEEec-cCCChhhHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEE--ccccchhhc--C
Q 042119          126 NGVVQPKKVAFVG-SGPMPLTSIIMAKHHLTSTHFDNFDIDEAANDVARSIVASDAEFEGRMKFLT--RDIMEVKEQ--L  200 (286)
Q Consensus       126 ~~~~~~~~VL~IG-~G~lp~tai~lA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~g~l~~~i~f~~--~D~~~~~~~--l  200 (286)
                      ..++++++||.+| +|++|..++.+|+.  .|++|+++|.+++..+.+++    +|.  + ..+..  .|..+....  -
T Consensus       159 ~~~~~g~~VlV~Ga~G~iG~~~~q~a~~--~Ga~Vi~~~~~~~~~~~~~~----~Ga--~-~~~~~~~~~~~~~~~~~~~  229 (362)
T 2c0c_A          159 GGLSEGKKVLVTAAAGGTGQFAMQLSKK--AKCHVIGTCSSDEKSAFLKS----LGC--D-RPINYKTEPVGTVLKQEYP  229 (362)
T ss_dssp             TCCCTTCEEEETTTTBTTHHHHHHHHHH--TTCEEEEEESSHHHHHHHHH----TTC--S-EEEETTTSCHHHHHHHHCT
T ss_pred             cCCCCCCEEEEeCCCcHHHHHHHHHHHh--CCCEEEEEECCHHHHHHHHH----cCC--c-EEEecCChhHHHHHHHhcC
Confidence            3568899999999 79999999999994  68999999999998888765    562  2 11211  121111111  1


Q ss_pred             CCcceeehhhhccCChhHHHHHHHHHHhhccCCcEEEEee
Q 042119          201 GEYDCIFLAALVGMSKEEKLTILGHIRKYMKDGGILLVRS  240 (286)
Q Consensus       201 ~~fD~V~~aalvg~~~~~k~~vl~~l~~~l~pgg~lv~r~  240 (286)
                      .++|+||.++  |    .  ..++...+.|++||++++-.
T Consensus       230 ~g~D~vid~~--g----~--~~~~~~~~~l~~~G~iv~~g  261 (362)
T 2c0c_A          230 EGVDVVYESV--G----G--AMFDLAVDALATKGRLIVIG  261 (362)
T ss_dssp             TCEEEEEECS--C----T--HHHHHHHHHEEEEEEEEECC
T ss_pred             CCCCEEEECC--C----H--HHHHHHHHHHhcCCEEEEEe
Confidence            3699999654  3    1  36778899999999998864

>1pqw_A Polyketide synthase; rossmann fold, dimer, structural genomics, PSI, protein STRU initiative; 2.66A {Mycobacterium tuberculosis} SCOP: c.2.1.1

Probab=97.64  E-value=3.5e-05  Score=65.08  Aligned_cols=99  Identities=10%  Similarity=0.106  Sum_probs=67.8

Q ss_pred             cCCCCCCEEEEec-cCCChhhHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEcc--ccc-hhhcC-
Q 042119          126 NGVVQPKKVAFVG-SGPMPLTSIIMAKHHLTSTHFDNFDIDEAANDVARSIVASDAEFEGRMKFLTRD--IME-VKEQL-  200 (286)
Q Consensus       126 ~~~~~~~~VL~IG-~G~lp~tai~lA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~g~l~~~i~f~~~D--~~~-~~~~l-  200 (286)
                      ..+.++++|+.+| +|++|..+..+++.  .|++|+++|.+++..+.+++    .| .  ...+...+  ..+ +.... 
T Consensus        34 ~~~~~g~~vlV~Ga~ggiG~~~~~~~~~--~G~~V~~~~~~~~~~~~~~~----~g-~--~~~~d~~~~~~~~~~~~~~~  104 (198)
T 1pqw_A           34 GRLSPGERVLIHSATGGVGMAAVSIAKM--IGARIYTTAGSDAKREMLSR----LG-V--EYVGDSRSVDFADEILELTD  104 (198)
T ss_dssp             SCCCTTCEEEETTTTSHHHHHHHHHHHH--HTCEEEEEESSHHHHHHHHT----TC-C--SEEEETTCSTHHHHHHHHTT
T ss_pred             hCCCCCCEEEEeeCCChHHHHHHHHHHH--cCCEEEEEeCCHHHHHHHHH----cC-C--CEEeeCCcHHHHHHHHHHhC
Confidence            3567889999999 68889888888874  68999999999988776644    56 2  22221111  111 11111 


Q ss_pred             -CCcceeehhhhccCChhHHHHHHHHHHhhccCCcEEEEeec
Q 042119          201 -GEYDCIFLAALVGMSKEEKLTILGHIRKYMKDGGILLVRSA  241 (286)
Q Consensus       201 -~~fD~V~~aalvg~~~~~k~~vl~~l~~~l~pgg~lv~r~~  241 (286)
                       .++|+|+.++  |   .   ..++...+.|+|||+++.-..
T Consensus       105 ~~~~D~vi~~~--g---~---~~~~~~~~~l~~~G~~v~~g~  138 (198)
T 1pqw_A          105 GYGVDVVLNSL--A---G---EAIQRGVQILAPGGRFIELGK  138 (198)
T ss_dssp             TCCEEEEEECC--C---T---HHHHHHHHTEEEEEEEEECSC
T ss_pred             CCCCeEEEECC--c---h---HHHHHHHHHhccCCEEEEEcC
Confidence             3599999654  3   1   367788999999999988653

>3p2y_A Alanine dehydrogenase/pyridine nucleotide transhy; seattle structural genomics center for infectious disease, S tuberculosis; 1.82A {Mycobacterium smegmatis str}

Probab=97.63  E-value=1.8e-05  Score=75.05  Aligned_cols=100  Identities=17%  Similarity=0.306  Sum_probs=70.8

Q ss_pred             CCCCEEEEeccCCChhhHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEc-----------------
Q 042119          129 VQPKKVAFVGSGPMPLTSIIMAKHHLTSTHFDNFDIDEAANDVARSIVASDAEFEGRMKFLTR-----------------  191 (286)
Q Consensus       129 ~~~~~VL~IG~G~lp~tai~lA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~g~l~~~i~f~~~-----------------  191 (286)
                      .++.+|+.||+|++|..+..+++.  .|++|+++|++++..+.+++    +|.     +|...                 
T Consensus       182 v~~~kV~ViG~G~iG~~aa~~a~~--lGa~V~v~D~~~~~l~~~~~----lGa-----~~~~l~~~~~~~~gya~~~~~~  250 (381)
T 3p2y_A          182 VKPASALVLGVGVAGLQALATAKR--LGAKTTGYDVRPEVAEQVRS----VGA-----QWLDLGIDAAGEGGYARELSEA  250 (381)
T ss_dssp             ECCCEEEEESCSHHHHHHHHHHHH--HTCEEEEECSSGGGHHHHHH----TTC-----EECCCC-------------CHH
T ss_pred             cCCCEEEEECchHHHHHHHHHHHH--CCCEEEEEeCCHHHHHHHHH----cCC-----eEEeccccccccccchhhhhHH
Confidence            478999999999999999999984  68999999999998887766    341     22211                 


Q ss_pred             ----cccchhhcCCCcceeehhhhccCChhHHHHHHHHHHhhccCCcEEEEee
Q 042119          192 ----DIMEVKEQLGEYDCIFLAALVGMSKEEKLTILGHIRKYMKDGGILLVRS  240 (286)
Q Consensus       192 ----D~~~~~~~l~~fD~V~~aalvg~~~~~k~~vl~~l~~~l~pgg~lv~r~  240 (286)
                          +..++...+.++|+|+.+.++.....++ -+-+++.+.||||++|+--.
T Consensus       251 ~~~~~~~~l~e~l~~aDIVI~tv~iPg~~ap~-Lvt~emv~~MkpGsVIVDvA  302 (381)
T 3p2y_A          251 ERAQQQQALEDAITKFDIVITTALVPGRPAPR-LVTAAAATGMQPGSVVVDLA  302 (381)
T ss_dssp             HHHHHHHHHHHHHTTCSEEEECCCCTTSCCCC-CBCHHHHHTSCTTCEEEETT
T ss_pred             HHhhhHHHHHHHHhcCCEEEECCCCCCcccce-eecHHHHhcCCCCcEEEEEe
Confidence                1112333446899999776552211222 14468899999999888765

>4dio_A NAD(P) transhydrogenase subunit alpha PART 1; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.60A {Sinorhizobium meliloti}

Probab=97.63  E-value=2.2e-05  Score=75.02  Aligned_cols=100  Identities=21%  Similarity=0.298  Sum_probs=70.9

Q ss_pred             CCCCEEEEeccCCChhhHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEcc----------------
Q 042119          129 VQPKKVAFVGSGPMPLTSIIMAKHHLTSTHFDNFDIDEAANDVARSIVASDAEFEGRMKFLTRD----------------  192 (286)
Q Consensus       129 ~~~~~VL~IG~G~lp~tai~lA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~g~l~~~i~f~~~D----------------  192 (286)
                      .++.+|+.||+|+.|+.+..+++.  .|++|+++|++++..+.+++    +|.     +|...+                
T Consensus       188 v~~~kV~ViG~G~iG~~aa~~a~~--lGa~V~v~D~~~~~l~~~~~----~G~-----~~~~~~~~~~~d~~~~~~ya~e  256 (405)
T 4dio_A          188 VPAAKIFVMGAGVAGLQAIATARR--LGAVVSATDVRPAAKEQVAS----LGA-----KFIAVEDEEFKAAETAGGYAKE  256 (405)
T ss_dssp             ECCCEEEEECCSHHHHHHHHHHHH--TTCEEEEECSSTTHHHHHHH----TTC-----EECCCCC---------------
T ss_pred             cCCCEEEEECCcHHHHHHHHHHHH--CCCEEEEEcCCHHHHHHHHH----cCC-----ceeecccccccccccccchhhh
Confidence            478999999999999999999984  79999999999998887766    341     121110                


Q ss_pred             ---------ccchhhcCCCcceeehhhhccCChhHHHHHHHHHHhhccCCcEEEEee
Q 042119          193 ---------IMEVKEQLGEYDCIFLAALVGMSKEEKLTILGHIRKYMKDGGILLVRS  240 (286)
Q Consensus       193 ---------~~~~~~~l~~fD~V~~aalvg~~~~~k~~vl~~l~~~l~pgg~lv~r~  240 (286)
                               ...+...+.+.|+|+.+.++.....++ -+-+++.+.||||++|+--+
T Consensus       257 ~s~~~~~~~~~~l~e~l~~aDVVI~tvlipg~~ap~-Lvt~emv~~Mk~GsVIVDvA  312 (405)
T 4dio_A          257 MSGEYQVKQAALVAEHIAKQDIVITTALIPGRPAPR-LVTREMLDSMKPGSVVVDLA  312 (405)
T ss_dssp             --CHHHHHHHHHHHHHHHTCSEEEECCCCSSSCCCC-CBCHHHHTTSCTTCEEEETT
T ss_pred             cchhhhhhhHhHHHHHhcCCCEEEECCcCCCCCCCE-EecHHHHhcCCCCCEEEEEe
Confidence                     112222335799999877663222222 14568899999999988765

>3tos_A CALS11; methyltransferase, calicheamicin, structural genomic protein structure initiative, PSI, natPro; HET: MSE SAH GLU; 1.55A {Micromonospora echinospora} PDB: 4gf5_A*

Probab=97.61  E-value=0.00027  Score=63.58  Aligned_cols=140  Identities=14%  Similarity=0.117  Sum_probs=93.7

Q ss_pred             CcccccccCcCccchhhhhHHHH-HHHHhcCCCCCCEEEEeccCCChhhHHHHHhh------cCCCcEEEEEe-----CC
Q 042119           98 QPLNNLSLFPYYGNYVKLSKLEY-TILSENGVVQPKKVAFVGSGPMPLTSIIMAKH------HLTSTHFDNFD-----ID  165 (286)
Q Consensus        98 ~p~~~L~~fpy~~ny~~l~~~E~-~~l~~~~~~~~~~VL~IG~G~lp~tai~lA~~------~~~g~~V~~iD-----id  165 (286)
                      .|...|..||.|-.-..+++.-. ..+-+....-|..|++.|+- -|-|++.+|+.      ..+.-+|.++|     ..
T Consensus        36 ~~~e~l~~~~~~~~~~~l~~~l~~~~l~~~i~~vpG~ivE~GV~-rG~S~~~~a~~~~~l~~~~~~r~v~~fDTFeG~P~  114 (257)
T 3tos_A           36 PTEELVNNLPLFLRRHQMTDLLSMDALYRQVLDVPGVIMEFGVR-FGRHLGTFAALRGVYEPYNPLRRIVGFDTFTGFPD  114 (257)
T ss_dssp             CGGGGGGCGGGGCCHHHHHHHHHHHHHHHHTTTSCSEEEEECCT-TCHHHHHHHHHHHHHCTTCTTCCEEEEECSSCCCS
T ss_pred             ChHHHHHhHHhhhhHHHHHHHHHHHHHHHHhhCCCCeEEEEecc-cCHHHHHHHHHHHHhcccCCCCEEEEEECCCCCCC
Confidence            44566778887766555554421 12223334667899999998 57788887752      12568999999     43


Q ss_pred             hHH-------------------HHHHHHHH------HhcCCCCCCeEEEEccccchhhcC------CCcceeehhhhccC
Q 042119          166 EAA-------------------NDVARSIV------ASDAEFEGRMKFLTRDIMEVKEQL------GEYDCIFLAALVGM  214 (286)
Q Consensus       166 ~~a-------------------i~~Ar~~~------~~~g~l~~~i~f~~~D~~~~~~~l------~~fD~V~~aalvg~  214 (286)
                      +..                   .+.-++++      ++.|...++|+++.|++.+....+      ..||+|++++-.  
T Consensus       115 ~~~~D~~~~~~~~G~~~~~~~~~~~l~~~l~~~~~~~~~g~~~~~i~li~G~~~dTL~~~l~~~~~~~~dlv~ID~D~--  192 (257)
T 3tos_A          115 VNDVDRVGPTAYQGRFAVPGGYPAYLKEVLDAHECSDFFGHVTQRSVLVEGDVRETVPRYLAENPQTVIALAYFDLDL--  192 (257)
T ss_dssp             CCGGGTTSTTCSTTTTCCCTTHHHHHHHHHHHHHTTSTTTTSCCSEEEEESCHHHHHHHHHHHCTTCCEEEEEECCCC--
T ss_pred             CccccccccccccCcccccchhHHHHHHHHHHHhhhhhcCCCCCcEEEEEecHHHHHHHHHHhCCCCceEEEEEcCcc--
Confidence            211                   11122222      346733589999999998765432      259999999743  


Q ss_pred             ChhHHHHHHHHHHhhccCCcEEEEeec
Q 042119          215 SKEEKLTILGHIRKYMKDGGILLVRSA  241 (286)
Q Consensus       215 ~~~~k~~vl~~l~~~l~pgg~lv~r~~  241 (286)
                       -+.-...++.+.++|+|||++++.+.
T Consensus       193 -Y~~t~~~le~~~p~l~~GGvIv~DD~  218 (257)
T 3tos_A          193 -YEPTKAVLEAIRPYLTKGSIVAFDEL  218 (257)
T ss_dssp             -HHHHHHHHHHHGGGEEEEEEEEESST
T ss_pred             -cchHHHHHHHHHHHhCCCcEEEEcCC
Confidence             25566789999999999999999884

>1cdo_A Alcohol dehydrogenase; oxidoreductase, oxidoreductase (CH-OH(D)-NAD(A)); HET: NAD; 2.05A {Gadus callarias} SCOP: b.35.1.2 c.2.1.1

Probab=97.61  E-value=6.1e-05  Score=70.20  Aligned_cols=100  Identities=13%  Similarity=0.135  Sum_probs=70.9

Q ss_pred             hcCCCCCCEEEEeccCCChhhHHHHHhhcCCCc-EEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEc----cccchhhc
Q 042119          125 ENGVVQPKKVAFVGSGPMPLTSIIMAKHHLTST-HFDNFDIDEAANDVARSIVASDAEFEGRMKFLTR----DIMEVKEQ  199 (286)
Q Consensus       125 ~~~~~~~~~VL~IG~G~lp~tai~lA~~~~~g~-~V~~iDid~~ai~~Ar~~~~~~g~l~~~i~f~~~----D~~~~~~~  199 (286)
                      +..+.++++||.+|+|++|+.++.+|+.  .|+ +|+++|.+++..+.+++    +|.  +. .+...    |..+....
T Consensus       187 ~~~~~~g~~VlV~GaG~vG~~a~qla~~--~Ga~~Vi~~~~~~~~~~~~~~----lGa--~~-vi~~~~~~~~~~~~~~~  257 (374)
T 1cdo_A          187 TAKVEPGSTCAVFGLGAVGLAAVMGCHS--AGAKRIIAVDLNPDKFEKAKV----FGA--TD-FVNPNDHSEPISQVLSK  257 (374)
T ss_dssp             TTCCCTTCEEEEECCSHHHHHHHHHHHH--TTCSEEEEECSCGGGHHHHHH----TTC--CE-EECGGGCSSCHHHHHHH
T ss_pred             ccCCCCCCEEEEECCCHHHHHHHHHHHH--cCCCEEEEEcCCHHHHHHHHH----hCC--ce-EEeccccchhHHHHHHH
Confidence            4457889999999999999999999994  688 89999999999888765    562  21 12111    11111111


Q ss_pred             --CCCcceeehhhhccCChhHHHHHHHHHHhhccCC-cEEEEee
Q 042119          200 --LGEYDCIFLAALVGMSKEEKLTILGHIRKYMKDG-GILLVRS  240 (286)
Q Consensus       200 --l~~fD~V~~aalvg~~~~~k~~vl~~l~~~l~pg-g~lv~r~  240 (286)
                        -+++|+||.+.-.       ...++...+.|+|| |+++.-.
T Consensus       258 ~~~~g~D~vid~~g~-------~~~~~~~~~~l~~~~G~iv~~G  294 (374)
T 1cdo_A          258 MTNGGVDFSLECVGN-------VGVMRNALESCLKGWGVSVLVG  294 (374)
T ss_dssp             HHTSCBSEEEECSCC-------HHHHHHHHHTBCTTTCEEEECS
T ss_pred             HhCCCCCEEEECCCC-------HHHHHHHHHHhhcCCcEEEEEc
Confidence              1369999965421       13677888999999 9998764

>4a2c_A Galactitol-1-phosphate 5-dehydrogenase; oxidoreductase, metal binding-site; 1.87A {Escherichia coli}

Probab=97.60  E-value=8e-05  Score=68.32  Aligned_cols=105  Identities=15%  Similarity=0.081  Sum_probs=73.0

Q ss_pred             HHHhcCCCCCCEEEEeccCCChhhHHHHHhhcCCCc-EEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEccccchh---
Q 042119          122 ILSENGVVQPKKVAFVGSGPMPLTSIIMAKHHLTST-HFDNFDIDEAANDVARSIVASDAEFEGRMKFLTRDIMEVK---  197 (286)
Q Consensus       122 ~l~~~~~~~~~~VL~IG~G~lp~tai~lA~~~~~g~-~V~~iDid~~ai~~Ar~~~~~~g~l~~~i~f~~~D~~~~~---  197 (286)
                      .+.+....++++||..|+|++|..++.+|+.  .|+ .++++|.+++..++|++    +| ...-+.+...|..+..   
T Consensus       152 ~~~~~~~~~g~~VlV~GaG~vG~~aiq~ak~--~G~~~vi~~~~~~~k~~~a~~----lG-a~~~i~~~~~~~~~~~~~~  224 (346)
T 4a2c_A          152 AFHLAQGCENKNVIIIGAGTIGLLAIQCAVA--LGAKSVTAIDISSEKLALAKS----FG-AMQTFNSSEMSAPQMQSVL  224 (346)
T ss_dssp             HHHHTTCCTTSEEEEECCSHHHHHHHHHHHH--TTCSEEEEEESCHHHHHHHHH----TT-CSEEEETTTSCHHHHHHHH
T ss_pred             HHHHhccCCCCEEEEECCCCcchHHHHHHHH--cCCcEEEEEechHHHHHHHHH----cC-CeEEEeCCCCCHHHHHHhh
Confidence            3445567899999999999999999999994  454 57899999999888776    56 2222222222222221   


Q ss_pred             hcCCCcceeehhhhccCChhHHHHHHHHHHhhccCCcEEEEee
Q 042119          198 EQLGEYDCIFLAALVGMSKEEKLTILGHIRKYMKDGGILLVRS  240 (286)
Q Consensus       198 ~~l~~fD~V~~aalvg~~~~~k~~vl~~l~~~l~pgg~lv~r~  240 (286)
                      .+...+|+|+.+.-.       ...++...+.+++||.+++-.
T Consensus       225 ~~~~g~d~v~d~~G~-------~~~~~~~~~~l~~~G~~v~~g  260 (346)
T 4a2c_A          225 RELRFNQLILETAGV-------PQTVELAVEIAGPHAQLALVG  260 (346)
T ss_dssp             GGGCSSEEEEECSCS-------HHHHHHHHHHCCTTCEEEECC
T ss_pred             cccCCcccccccccc-------cchhhhhhheecCCeEEEEEe
Confidence            123468998865432       136777888999999999865

>4dvj_A Putative zinc-dependent alcohol dehydrogenase Pro; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 1.99A {Rhizobium etli}

Probab=97.60  E-value=8.1e-05  Score=69.40  Aligned_cols=95  Identities=12%  Similarity=0.118  Sum_probs=68.0

Q ss_pred             CCCEEEEec-cCCChhhHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEE-ccccchhhcC--CCcce
Q 042119          130 QPKKVAFVG-SGPMPLTSIIMAKHHLTSTHFDNFDIDEAANDVARSIVASDAEFEGRMKFLT-RDIMEVKEQL--GEYDC  205 (286)
Q Consensus       130 ~~~~VL~IG-~G~lp~tai~lA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~g~l~~~i~f~~-~D~~~~~~~l--~~fD~  205 (286)
                      ++++||.+| +|++|+.++.+|+ +..|++|+++|.+++..+++++    +|.  +.+ +-. .|..+....+  +++|+
T Consensus       171 ~g~~VlV~Ga~G~vG~~a~qlak-~~~g~~Vi~~~~~~~~~~~~~~----lGa--d~v-i~~~~~~~~~v~~~~~~g~Dv  242 (363)
T 4dvj_A          171 AAPAILIVGGAGGVGSIAVQIAR-QRTDLTVIATASRPETQEWVKS----LGA--HHV-IDHSKPLAAEVAALGLGAPAF  242 (363)
T ss_dssp             SEEEEEEESTTSHHHHHHHHHHH-HHCCSEEEEECSSHHHHHHHHH----TTC--SEE-ECTTSCHHHHHHTTCSCCEEE
T ss_pred             CCCEEEEECCCCHHHHHHHHHHH-HhcCCEEEEEeCCHHHHHHHHH----cCC--CEE-EeCCCCHHHHHHHhcCCCceE
Confidence            788999999 9999999999998 3468999999999999888765    562  211 111 1221111122  36999


Q ss_pred             eehhhhccCChhHHHHHHHHHHhhccCCcEEEEe
Q 042119          206 IFLAALVGMSKEEKLTILGHIRKYMKDGGILLVR  239 (286)
Q Consensus       206 V~~aalvg~~~~~k~~vl~~l~~~l~pgg~lv~r  239 (286)
                      ||.+...       ...++...+.|+|||++++-
T Consensus       243 vid~~g~-------~~~~~~~~~~l~~~G~iv~~  269 (363)
T 4dvj_A          243 VFSTTHT-------DKHAAEIADLIAPQGRFCLI  269 (363)
T ss_dssp             EEECSCH-------HHHHHHHHHHSCTTCEEEEC
T ss_pred             EEECCCc-------hhhHHHHHHHhcCCCEEEEE
Confidence            9965421       14677888999999999875

>3s1s_A Restriction endonuclease bpusi; PD--(D/E)XK catalytic motif, gamma-N6M-adenosine methyltrans S-adenosyl-methionine binding, hydrolase; HET: SAH; 2.35A {Bacillus pumilus}

Probab=97.60  E-value=0.00013  Score=75.30  Aligned_cols=111  Identities=10%  Similarity=0.098  Sum_probs=71.6

Q ss_pred             CCCCEEEEeccCCChhhHHHHHhhcCC---CcEEEEEeCChHHHHHH--HHHHHh----cCCCCCCeEEEEccccchh-h
Q 042119          129 VQPKKVAFVGSGPMPLTSIIMAKHHLT---STHFDNFDIDEAANDVA--RSIVAS----DAEFEGRMKFLTRDIMEVK-E  198 (286)
Q Consensus       129 ~~~~~VL~IG~G~lp~tai~lA~~~~~---g~~V~~iDid~~ai~~A--r~~~~~----~g~l~~~i~f~~~D~~~~~-~  198 (286)
                      .++.+|+|.|||++++. +.++++ .+   ..+++|+|+|+.+++.|  +..+..    .| . ....+...|..+.. .
T Consensus       320 ~~g~rVLDPaCGSG~FL-IaaA~~-l~ei~~~~IyGvEIDp~Al~LAK~RlNL~lN~LlhG-i-~~~~I~~dD~L~~~~~  395 (878)
T 3s1s_A          320 TEDEVISDPAAGSGNLL-ATVSAG-FNNVMPRQIWANDIETLFLELLSIRLGLLFPQLVSS-N-NAPTITGEDVCSLNPE  395 (878)
T ss_dssp             CTTCEEEETTCTTSHHH-HHHHHT-STTCCGGGEEEECSCGGGHHHHHHHHHTTSTTTCBT-T-BCCEEECCCGGGCCGG
T ss_pred             CCCCEEEECCCCccHHH-HHHHHH-hcccCCCeEEEEECCHHHHHHHHHHHHHHHhhhhcC-C-CcceEEecchhccccc
Confidence            46789999999987665 444542 32   46899999999999999  544333    22 1 22466667765422 1


Q ss_pred             cCCCcceeehhhhc----cCChh------------------------HHHHHHHHHHhhccCCcEEEEeecCc
Q 042119          199 QLGEYDCIFLAALV----GMSKE------------------------EKLTILGHIRKYMKDGGILLVRSAKG  243 (286)
Q Consensus       199 ~l~~fD~V~~aalv----g~~~~------------------------~k~~vl~~l~~~l~pgg~lv~r~~~g  243 (286)
                      ....||+|+..---    .++..                        ....+++++.+.|+|||++.+-.++|
T Consensus       396 ~~~kFDVVIgNPPYg~~~~~~~e~kd~~~r~~~g~p~~p~s~~G~~DLy~aFIe~Al~lLKpGGrLAfIlP~s  468 (878)
T 3s1s_A          396 DFANVSVVVMNPPYVSGVTDPAIKRKFAHKIIQLTGNRPQTLFGQIGVEALFLELVTELVQDGTVISAIMPKQ  468 (878)
T ss_dssp             GGTTEEEEEECCBCCSSCCCHHHHHHHHHHHHHHHSSCCSSCSSSCCHHHHHHHHHHHHSCTTCEEEEEEETH
T ss_pred             ccCCCCEEEECCCccccccchhhhhhHHHHhhhhccccccccccccchHHHHHHHHHHhcCCCcEEEEEEChH
Confidence            33579998743211    11100                        12347889999999999988876544

>2d8a_A PH0655, probable L-threonine 3-dehydrogenase; pyrococcus horikoshii OT3, structural genomics; HET: NAD; 2.05A {Pyrococcus horikoshii} PDB: 2dfv_A* 3gfb_A*

Probab=97.59  E-value=3.6e-05  Score=71.11  Aligned_cols=104  Identities=13%  Similarity=0.130  Sum_probs=71.4

Q ss_pred             HHHhcCCCCCCEEEEeccCCChhhHHHHHhhcCCCc-EEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEccccchhhc-
Q 042119          122 ILSENGVVQPKKVAFVGSGPMPLTSIIMAKHHLTST-HFDNFDIDEAANDVARSIVASDAEFEGRMKFLTRDIMEVKEQ-  199 (286)
Q Consensus       122 ~l~~~~~~~~~~VL~IG~G~lp~tai~lA~~~~~g~-~V~~iDid~~ai~~Ar~~~~~~g~l~~~i~f~~~D~~~~~~~-  199 (286)
                      ++.+..+ ++++||.+|+|++|..++.+|+.  .|+ +|+++|.+++..+.+++    +|. ..-+.....|..+.... 
T Consensus       160 ~l~~~~~-~g~~VlV~GaG~vG~~~~q~a~~--~Ga~~Vi~~~~~~~~~~~~~~----~Ga-~~~~~~~~~~~~~~v~~~  231 (348)
T 2d8a_A          160 TVLAGPI-SGKSVLITGAGPLGLLGIAVAKA--SGAYPVIVSEPSDFRRELAKK----VGA-DYVINPFEEDVVKEVMDI  231 (348)
T ss_dssp             HHTTSCC-TTCCEEEECCSHHHHHHHHHHHH--TTCCSEEEECSCHHHHHHHHH----HTC-SEEECTTTSCHHHHHHHH
T ss_pred             HHHhcCC-CCCEEEEECCCHHHHHHHHHHHH--cCCCEEEEECCCHHHHHHHHH----hCC-CEEECCCCcCHHHHHHHH
Confidence            3445567 89999999999999999999994  688 99999999998888775    452 11111111121111111 


Q ss_pred             --CCCcceeehhhhccCChhHHHHHHHHHHhhccCCcEEEEee
Q 042119          200 --LGEYDCIFLAALVGMSKEEKLTILGHIRKYMKDGGILLVRS  240 (286)
Q Consensus       200 --l~~fD~V~~aalvg~~~~~k~~vl~~l~~~l~pgg~lv~r~  240 (286)
                        -.++|+||.+.-.       ...++...+.|++||+++.-.
T Consensus       232 ~~g~g~D~vid~~g~-------~~~~~~~~~~l~~~G~iv~~g  267 (348)
T 2d8a_A          232 TDGNGVDVFLEFSGA-------PKALEQGLQAVTPAGRVSLLG  267 (348)
T ss_dssp             TTTSCEEEEEECSCC-------HHHHHHHHHHEEEEEEEEECC
T ss_pred             cCCCCCCEEEECCCC-------HHHHHHHHHHHhcCCEEEEEc
Confidence              1269999966431       136778889999999998865

>3qwb_A Probable quinone oxidoreductase; rossmann fold, quinone oxidoreductases, NADPH, cytoplasm and oxidoreductase; HET: NDP; 1.59A {Saccharomyces cerevisiae} PDB: 3qwa_A*

Probab=97.58  E-value=5.4e-05  Score=69.42  Aligned_cols=97  Identities=13%  Similarity=0.068  Sum_probs=69.6

Q ss_pred             CCCCCCEEEEec-cCCChhhHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEE--ccccchhhc---C
Q 042119          127 GVVQPKKVAFVG-SGPMPLTSIIMAKHHLTSTHFDNFDIDEAANDVARSIVASDAEFEGRMKFLT--RDIMEVKEQ---L  200 (286)
Q Consensus       127 ~~~~~~~VL~IG-~G~lp~tai~lA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~g~l~~~i~f~~--~D~~~~~~~---l  200 (286)
                      .+.++++||.+| +|++|..++.+|+.  .|++|+++|.+++..+.+++    +|.   ...+..  .|..+....   -
T Consensus       145 ~~~~g~~vlV~Ga~g~iG~~~~~~a~~--~Ga~Vi~~~~~~~~~~~~~~----~ga---~~~~~~~~~~~~~~~~~~~~~  215 (334)
T 3qwb_A          145 HVKKGDYVLLFAAAGGVGLILNQLLKM--KGAHTIAVASTDEKLKIAKE----YGA---EYLINASKEDILRQVLKFTNG  215 (334)
T ss_dssp             CCCTTCEEEESSTTBHHHHHHHHHHHH--TTCEEEEEESSHHHHHHHHH----TTC---SEEEETTTSCHHHHHHHHTTT
T ss_pred             cCCCCCEEEEECCCCHHHHHHHHHHHH--CCCEEEEEeCCHHHHHHHHH----cCC---cEEEeCCCchHHHHHHHHhCC
Confidence            568899999999 89999999999984  78999999999998887765    462   222221  111111111   1


Q ss_pred             CCcceeehhhhccCChhHHHHHHHHHHhhccCCcEEEEee
Q 042119          201 GEYDCIFLAALVGMSKEEKLTILGHIRKYMKDGGILLVRS  240 (286)
Q Consensus       201 ~~fD~V~~aalvg~~~~~k~~vl~~l~~~l~pgg~lv~r~  240 (286)
                      .++|+||.++-.        ..++...+.|+|||+++.-.
T Consensus       216 ~g~D~vid~~g~--------~~~~~~~~~l~~~G~iv~~G  247 (334)
T 3qwb_A          216 KGVDASFDSVGK--------DTFEISLAALKRKGVFVSFG  247 (334)
T ss_dssp             SCEEEEEECCGG--------GGHHHHHHHEEEEEEEEECC
T ss_pred             CCceEEEECCCh--------HHHHHHHHHhccCCEEEEEc
Confidence            369999966431        35777888999999998864

>4auk_A Ribosomal RNA large subunit methyltransferase M; YGDE; HET: TLA PGE; 1.90A {Escherichia coli} PDB: 4atn_A* 4b17_A*

Probab=97.56  E-value=0.00012  Score=69.11  Aligned_cols=88  Identities=14%  Similarity=0.217  Sum_probs=61.8

Q ss_pred             CCCCCEEEEeccCCChhhHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEccccchhhcCCCcceee
Q 042119          128 VVQPKKVAFVGSGPMPLTSIIMAKHHLTSTHFDNFDIDEAANDVARSIVASDAEFEGRMKFLTRDIMEVKEQLGEYDCIF  207 (286)
Q Consensus       128 ~~~~~~VL~IG~G~lp~tai~lA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~g~l~~~i~f~~~D~~~~~~~l~~fD~V~  207 (286)
                      +.++++|+|+||+|+|.|-. +++   .|++|++||+.+=    +..+ ...    .+|+++.+|+.+....-+.||+|+
T Consensus       209 l~~G~~vlDLGAaPGGWT~~-l~~---rg~~V~aVD~~~l----~~~l-~~~----~~V~~~~~d~~~~~~~~~~~D~vv  275 (375)
T 4auk_A          209 LANGMWAVDLGACPGGWTYQ-LVK---RNMWVYSVDNGPM----AQSL-MDT----GQVTWLREDGFKFRPTRSNISWMV  275 (375)
T ss_dssp             SCTTCEEEEETCTTCHHHHH-HHH---TTCEEEEECSSCC----CHHH-HTT----TCEEEECSCTTTCCCCSSCEEEEE
T ss_pred             CCCCCEEEEeCcCCCHHHHH-HHH---CCCEEEEEEhhhc----Chhh-ccC----CCeEEEeCccccccCCCCCcCEEE
Confidence            47899999999999999865 455   5899999998641    1121 222    479999999977655445799998


Q ss_pred             hhhhccCChhHHHHHHHHHHhhccCC
Q 042119          208 LAALVGMSKEEKLTILGHIRKYMKDG  233 (286)
Q Consensus       208 ~aalvg~~~~~k~~vl~~l~~~l~pg  233 (286)
                      .+..     ++..++++.+.+.+..|
T Consensus       276 sDm~-----~~p~~~~~l~~~wl~~~  296 (375)
T 4auk_A          276 CDMV-----EKPAKVAALMAQWLVNG  296 (375)
T ss_dssp             ECCS-----SCHHHHHHHHHHHHHTT
T ss_pred             EcCC-----CChHHhHHHHHHHHhcc
Confidence            7643     23345666666655554

>4b7c_A Probable oxidoreductase; NADP cofactor, rossmann fold; HET: MES; 2.10A {Pseudomonas aeruginosa PA01} PDB: 4b7x_A*

Probab=97.56  E-value=6.1e-05  Score=69.03  Aligned_cols=101  Identities=10%  Similarity=0.023  Sum_probs=71.1

Q ss_pred             HhcCCCCCCEEEEecc-CCChhhHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEc--cccchhhc-
Q 042119          124 SENGVVQPKKVAFVGS-GPMPLTSIIMAKHHLTSTHFDNFDIDEAANDVARSIVASDAEFEGRMKFLTR--DIMEVKEQ-  199 (286)
Q Consensus       124 ~~~~~~~~~~VL~IG~-G~lp~tai~lA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~g~l~~~i~f~~~--D~~~~~~~-  199 (286)
                      ....+.++++||.+|+ |++|..++.+|+.  .|++|+++|.+++..+.+.   +++| .  ...+...  |..+.... 
T Consensus       143 ~~~~~~~g~~vlI~Ga~g~iG~~~~~~a~~--~Ga~Vi~~~~~~~~~~~~~---~~~g-~--~~~~~~~~~~~~~~~~~~  214 (336)
T 4b7c_A          143 DVGQPKNGETVVISGAAGAVGSVAGQIARL--KGCRVVGIAGGAEKCRFLV---EELG-F--DGAIDYKNEDLAAGLKRE  214 (336)
T ss_dssp             HTTCCCTTCEEEESSTTSHHHHHHHHHHHH--TTCEEEEEESSHHHHHHHH---HTTC-C--SEEEETTTSCHHHHHHHH
T ss_pred             HhcCCCCCCEEEEECCCCHHHHHHHHHHHH--CCCEEEEEeCCHHHHHHHH---HHcC-C--CEEEECCCHHHHHHHHHh
Confidence            4556789999999998 8999999999984  7899999999998877762   2356 2  2222211  11111111 


Q ss_pred             -CCCcceeehhhhccCChhHHHHHHHHHHhhccCCcEEEEee
Q 042119          200 -LGEYDCIFLAALVGMSKEEKLTILGHIRKYMKDGGILLVRS  240 (286)
Q Consensus       200 -l~~fD~V~~aalvg~~~~~k~~vl~~l~~~l~pgg~lv~r~  240 (286)
                       -+++|+||.++-      .  ..++...+.|++||+++.-.
T Consensus       215 ~~~~~d~vi~~~g------~--~~~~~~~~~l~~~G~iv~~G  248 (336)
T 4b7c_A          215 CPKGIDVFFDNVG------G--EILDTVLTRIAFKARIVLCG  248 (336)
T ss_dssp             CTTCEEEEEESSC------H--HHHHHHHTTEEEEEEEEECC
T ss_pred             cCCCceEEEECCC------c--chHHHHHHHHhhCCEEEEEe
Confidence             136999986542      1  36788899999999998854

>3jyn_A Quinone oxidoreductase; rossmann fold, protein-NADPH complex; HET: NDP; 2.01A {Pseudomonas syringae PV} PDB: 3jyl_A*

Probab=97.56  E-value=3.8e-05  Score=70.28  Aligned_cols=98  Identities=9%  Similarity=-0.024  Sum_probs=70.3

Q ss_pred             cCCCCCCEEEEec-cCCChhhHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEc--cccchh-hcC-
Q 042119          126 NGVVQPKKVAFVG-SGPMPLTSIIMAKHHLTSTHFDNFDIDEAANDVARSIVASDAEFEGRMKFLTR--DIMEVK-EQL-  200 (286)
Q Consensus       126 ~~~~~~~~VL~IG-~G~lp~tai~lA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~g~l~~~i~f~~~--D~~~~~-~~l-  200 (286)
                      ..++++++||.+| +|++|..++.+|+.  .|++|+++|.+++..+.+++    +|.   ...+...  |..+.. ... 
T Consensus       136 ~~~~~g~~VlV~Ga~g~iG~~~~~~a~~--~Ga~Vi~~~~~~~~~~~~~~----~Ga---~~~~~~~~~~~~~~~~~~~~  206 (325)
T 3jyn_A          136 YQVKPGEIILFHAAAGGVGSLACQWAKA--LGAKLIGTVSSPEKAAHAKA----LGA---WETIDYSHEDVAKRVLELTD  206 (325)
T ss_dssp             SCCCTTCEEEESSTTSHHHHHHHHHHHH--HTCEEEEEESSHHHHHHHHH----HTC---SEEEETTTSCHHHHHHHHTT
T ss_pred             cCCCCCCEEEEEcCCcHHHHHHHHHHHH--CCCEEEEEeCCHHHHHHHHH----cCC---CEEEeCCCccHHHHHHHHhC
Confidence            3568899999999 89999999999984  78999999999999888875    452   1222211  111111 111 


Q ss_pred             -CCcceeehhhhccCChhHHHHHHHHHHhhccCCcEEEEee
Q 042119          201 -GEYDCIFLAALVGMSKEEKLTILGHIRKYMKDGGILLVRS  240 (286)
Q Consensus       201 -~~fD~V~~aalvg~~~~~k~~vl~~l~~~l~pgg~lv~r~  240 (286)
                       .++|+||.++..        ..++...+.|+|||+++.-.
T Consensus       207 ~~g~Dvvid~~g~--------~~~~~~~~~l~~~G~iv~~g  239 (325)
T 3jyn_A          207 GKKCPVVYDGVGQ--------DTWLTSLDSVAPRGLVVSFG  239 (325)
T ss_dssp             TCCEEEEEESSCG--------GGHHHHHTTEEEEEEEEECC
T ss_pred             CCCceEEEECCCh--------HHHHHHHHHhcCCCEEEEEe
Confidence             369999965431        35677889999999999875

>2jhf_A Alcohol dehydrogenase E chain; oxidoreductase, metal coordination, NAD, zinc, inhibition, acetylation, metal-binding; HET: NAD; 1.0A {Equus caballus} SCOP: b.35.1.2 c.2.1.1 PDB: 1adc_A* 1adf_A* 1adg_A* 1adb_A* 1bto_A* 1heu_A* 1hf3_A* 1hld_A* 1lde_A* 1ldy_A* 1mg0_A* 1n92_A* 1p1r_A* 1ye3_A 1het_A* 2jhg_A* 2ohx_A* 2oxi_A* 3bto_A* 4dwv_A* ...

Probab=97.54  E-value=8.7e-05  Score=69.16  Aligned_cols=100  Identities=19%  Similarity=0.194  Sum_probs=70.5

Q ss_pred             hcCCCCCCEEEEeccCCChhhHHHHHhhcCCCc-EEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEc----cccchhhc
Q 042119          125 ENGVVQPKKVAFVGSGPMPLTSIIMAKHHLTST-HFDNFDIDEAANDVARSIVASDAEFEGRMKFLTR----DIMEVKEQ  199 (286)
Q Consensus       125 ~~~~~~~~~VL~IG~G~lp~tai~lA~~~~~g~-~V~~iDid~~ai~~Ar~~~~~~g~l~~~i~f~~~----D~~~~~~~  199 (286)
                      ...+.++++||.+|+|++|..++.+|+.  .|+ +|+++|.+++..+++++    +|.  +. .+...    |..+....
T Consensus       186 ~~~~~~g~~VlV~GaG~vG~~a~qla~~--~Ga~~Vi~~~~~~~~~~~~~~----lGa--~~-vi~~~~~~~~~~~~~~~  256 (374)
T 2jhf_A          186 VAKVTQGSTCAVFGLGGVGLSVIMGCKA--AGAARIIGVDINKDKFAKAKE----VGA--TE-CVNPQDYKKPIQEVLTE  256 (374)
T ss_dssp             TTCCCTTCEEEEECCSHHHHHHHHHHHH--TTCSEEEEECSCGGGHHHHHH----TTC--SE-EECGGGCSSCHHHHHHH
T ss_pred             ccCCCCCCEEEEECCCHHHHHHHHHHHH--cCCCeEEEEcCCHHHHHHHHH----hCC--ce-EecccccchhHHHHHHH
Confidence            3456889999999999999999999994  688 89999999999888764    562  21 12111    11111111


Q ss_pred             C--CCcceeehhhhccCChhHHHHHHHHHHhhccCC-cEEEEee
Q 042119          200 L--GEYDCIFLAALVGMSKEEKLTILGHIRKYMKDG-GILLVRS  240 (286)
Q Consensus       200 l--~~fD~V~~aalvg~~~~~k~~vl~~l~~~l~pg-g~lv~r~  240 (286)
                      .  +++|+||.+.-.       ...++...+.|++| |++++-.
T Consensus       257 ~~~~g~D~vid~~g~-------~~~~~~~~~~l~~~~G~iv~~G  293 (374)
T 2jhf_A          257 MSNGGVDFSFEVIGR-------LDTMVTALSCCQEAYGVSVIVG  293 (374)
T ss_dssp             HTTSCBSEEEECSCC-------HHHHHHHHHHBCTTTCEEEECS
T ss_pred             HhCCCCcEEEECCCC-------HHHHHHHHHHhhcCCcEEEEec
Confidence            1  369999966421       13577888999999 9998754

>4eye_A Probable oxidoreductase; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.10A {Mycobacterium abscessus}

Probab=97.53  E-value=5.8e-05  Score=69.68  Aligned_cols=100  Identities=14%  Similarity=0.113  Sum_probs=70.4

Q ss_pred             HhcCCCCCCEEEEecc-CCChhhHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCe-EEEEccccchhhc-C
Q 042119          124 SENGVVQPKKVAFVGS-GPMPLTSIIMAKHHLTSTHFDNFDIDEAANDVARSIVASDAEFEGRM-KFLTRDIMEVKEQ-L  200 (286)
Q Consensus       124 ~~~~~~~~~~VL~IG~-G~lp~tai~lA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~g~l~~~i-~f~~~D~~~~~~~-l  200 (286)
                      ....++++++||.+|+ |++|..++.+|+.  .|++|+++|.+++..+.+++    +|.  +.+ ... .|..+.... .
T Consensus       153 ~~~~~~~g~~VlV~Gasg~iG~~~~~~a~~--~Ga~Vi~~~~~~~~~~~~~~----~ga--~~v~~~~-~~~~~~v~~~~  223 (342)
T 4eye_A          153 RRGQLRAGETVLVLGAAGGIGTAAIQIAKG--MGAKVIAVVNRTAATEFVKS----VGA--DIVLPLE-EGWAKAVREAT  223 (342)
T ss_dssp             TTSCCCTTCEEEESSTTSHHHHHHHHHHHH--TTCEEEEEESSGGGHHHHHH----HTC--SEEEESS-TTHHHHHHHHT
T ss_pred             HhcCCCCCCEEEEECCCCHHHHHHHHHHHH--cCCEEEEEeCCHHHHHHHHh----cCC--cEEecCc-hhHHHHHHHHh
Confidence            3455788999999998 9999999999994  78999999999999888776    462  221 111 222111111 1


Q ss_pred             --CCcceeehhhhccCChhHHHHHHHHHHhhccCCcEEEEee
Q 042119          201 --GEYDCIFLAALVGMSKEEKLTILGHIRKYMKDGGILLVRS  240 (286)
Q Consensus       201 --~~fD~V~~aalvg~~~~~k~~vl~~l~~~l~pgg~lv~r~  240 (286)
                        .++|+||.++..        ..++...+.|++||+++.-.
T Consensus       224 ~~~g~Dvvid~~g~--------~~~~~~~~~l~~~G~iv~~G  257 (342)
T 4eye_A          224 GGAGVDMVVDPIGG--------PAFDDAVRTLASEGRLLVVG  257 (342)
T ss_dssp             TTSCEEEEEESCC----------CHHHHHHTEEEEEEEEEC-
T ss_pred             CCCCceEEEECCch--------hHHHHHHHhhcCCCEEEEEE
Confidence              269999966431        25677889999999998864

>1pjc_A Protein (L-alanine dehydrogenase); oxidoreductase, NAD; HET: NAD; 2.00A {Phormidium lapideum} SCOP: c.2.1.4 c.23.12.2 PDB: 1pjb_A* 1say_A

Probab=97.52  E-value=4.7e-05  Score=71.31  Aligned_cols=103  Identities=19%  Similarity=0.302  Sum_probs=69.5

Q ss_pred             CCCEEEEeccCCChhhHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEccccchhhcCCCcceeehh
Q 042119          130 QPKKVAFVGSGPMPLTSIIMAKHHLTSTHFDNFDIDEAANDVARSIVASDAEFEGRMKFLTRDIMEVKEQLGEYDCIFLA  209 (286)
Q Consensus       130 ~~~~VL~IG~G~lp~tai~lA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~g~l~~~i~f~~~D~~~~~~~l~~fD~V~~a  209 (286)
                      ++++|+.+|+|+.|..++.+++.  .|++|+.+|++++..+.+++...      ..+.....+..++...+.++|+|+.+
T Consensus       166 ~~~~VlViGaGgvG~~aa~~a~~--~Ga~V~v~dr~~~r~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~DvVI~~  237 (361)
T 1pjc_A          166 KPGKVVILGGGVVGTEAAKMAVG--LGAQVQIFDINVERLSYLETLFG------SRVELLYSNSAEIETAVAEADLLIGA  237 (361)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHH--TTCEEEEEESCHHHHHHHHHHHG------GGSEEEECCHHHHHHHHHTCSEEEEC
T ss_pred             CCCEEEEECCCHHHHHHHHHHHh--CCCEEEEEeCCHHHHHHHHHhhC------ceeEeeeCCHHHHHHHHcCCCEEEEC
Confidence            45999999999999999998884  68899999999998888776532      22333322222333334579999977


Q ss_pred             hhccCChhHHHHHHHHHHhhccCCcEEEEeec
Q 042119          210 ALVGMSKEEKLTILGHIRKYMKDGGILLVRSA  241 (286)
Q Consensus       210 alvg~~~~~k~~vl~~l~~~l~pgg~lv~r~~  241 (286)
                      ..+++...++ -+.+...+.|+|||+++.-..
T Consensus       238 ~~~~~~~~~~-li~~~~~~~~~~g~~ivdv~~  268 (361)
T 1pjc_A          238 VLVPGRRAPI-LVPASLVEQMRTGSVIVDVAV  268 (361)
T ss_dssp             CCCTTSSCCC-CBCHHHHTTSCTTCEEEETTC
T ss_pred             CCcCCCCCCe-ecCHHHHhhCCCCCEEEEEec
Confidence            6553211111 123456678999998887653

>2fzw_A Alcohol dehydrogenase class III CHI chain; S-nitrosoglutathione reductase, glutathione-dependent formaldehyde dehydrogenase, oxidoreductase; HET: NAD; 1.84A {Homo sapiens} SCOP: b.35.1.2 c.2.1.1 PDB: 3qj5_A* 1mc5_A* 2fze_A* 1m6w_A* 1ma0_A* 1mp0_A* 1teh_A* 1m6h_A*

Probab=97.51  E-value=8.3e-05  Score=69.19  Aligned_cols=100  Identities=18%  Similarity=0.176  Sum_probs=71.0

Q ss_pred             hcCCCCCCEEEEeccCCChhhHHHHHhhcCCCc-EEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEc----cccchhhc
Q 042119          125 ENGVVQPKKVAFVGSGPMPLTSIIMAKHHLTST-HFDNFDIDEAANDVARSIVASDAEFEGRMKFLTR----DIMEVKEQ  199 (286)
Q Consensus       125 ~~~~~~~~~VL~IG~G~lp~tai~lA~~~~~g~-~V~~iDid~~ai~~Ar~~~~~~g~l~~~i~f~~~----D~~~~~~~  199 (286)
                      ...++++++||.+|+|++|+.++.+|+.  .|+ +|+++|.+++..+++++    +|.  +. .+...    |..+....
T Consensus       185 ~~~~~~g~~VlV~GaG~vG~~avqla~~--~Ga~~Vi~~~~~~~~~~~~~~----lGa--~~-vi~~~~~~~~~~~~v~~  255 (373)
T 2fzw_A          185 TAKLEPGSVCAVFGLGGVGLAVIMGCKV--AGASRIIGVDINKDKFARAKE----FGA--TE-CINPQDFSKPIQEVLIE  255 (373)
T ss_dssp             TTCCCTTCEEEEECCSHHHHHHHHHHHH--HTCSEEEEECSCGGGHHHHHH----HTC--SE-EECGGGCSSCHHHHHHH
T ss_pred             hcCCCCCCEEEEECCCHHHHHHHHHHHH--cCCCeEEEEcCCHHHHHHHHH----cCC--ce-EeccccccccHHHHHHH
Confidence            3456889999999999999999999994  688 89999999999888875    462  21 12111    11111111


Q ss_pred             C--CCcceeehhhhccCChhHHHHHHHHHHhhccCC-cEEEEee
Q 042119          200 L--GEYDCIFLAALVGMSKEEKLTILGHIRKYMKDG-GILLVRS  240 (286)
Q Consensus       200 l--~~fD~V~~aalvg~~~~~k~~vl~~l~~~l~pg-g~lv~r~  240 (286)
                      .  +++|+||.+.-.       ...++...+.|+|| |+++.-.
T Consensus       256 ~~~~g~D~vid~~g~-------~~~~~~~~~~l~~~~G~iv~~G  292 (373)
T 2fzw_A          256 MTDGGVDYSFECIGN-------VKVMRAALEACHKGWGVSVVVG  292 (373)
T ss_dssp             HTTSCBSEEEECSCC-------HHHHHHHHHTBCTTTCEEEECS
T ss_pred             HhCCCCCEEEECCCc-------HHHHHHHHHhhccCCcEEEEEe
Confidence            1  369999966421       13677888999999 9998764

>3gms_A Putative NADPH:quinone reductase; structural genomics, putative quinone oxidoreductase, unknown function, PSI-2; 1.76A {Bacillus thuringiensis}

Probab=97.50  E-value=4.3e-05  Score=70.30  Aligned_cols=100  Identities=7%  Similarity=-0.079  Sum_probs=68.5

Q ss_pred             HhcCCCCCCEEEEeccC-CChhhHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEE--ccccch-hhc
Q 042119          124 SENGVVQPKKVAFVGSG-PMPLTSIIMAKHHLTSTHFDNFDIDEAANDVARSIVASDAEFEGRMKFLT--RDIMEV-KEQ  199 (286)
Q Consensus       124 ~~~~~~~~~~VL~IG~G-~lp~tai~lA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~g~l~~~i~f~~--~D~~~~-~~~  199 (286)
                      ....++++++||.+|+| ++|..++.+|+.  .|++|+++|.+++..+.+++    +|.   ...+-.  .|..+. ...
T Consensus       138 ~~~~~~~g~~VlV~Ga~g~iG~~~~~~a~~--~Ga~Vi~~~~~~~~~~~~~~----lga---~~~~~~~~~~~~~~~~~~  208 (340)
T 3gms_A          138 ETLNLQRNDVLLVNACGSAIGHLFAQLSQI--LNFRLIAVTRNNKHTEELLR----LGA---AYVIDTSTAPLYETVMEL  208 (340)
T ss_dssp             TTSCCCTTCEEEESSTTSHHHHHHHHHHHH--HTCEEEEEESSSTTHHHHHH----HTC---SEEEETTTSCHHHHHHHH
T ss_pred             HhcccCCCCEEEEeCCccHHHHHHHHHHHH--cCCEEEEEeCCHHHHHHHHh----CCC---cEEEeCCcccHHHHHHHH
Confidence            34567899999999997 789999999984  68999999999999888876    462   222211  121111 111


Q ss_pred             --CCCcceeehhhhccCChhHHHHHHHHHHhhccCCcEEEEee
Q 042119          200 --LGEYDCIFLAALVGMSKEEKLTILGHIRKYMKDGGILLVRS  240 (286)
Q Consensus       200 --l~~fD~V~~aalvg~~~~~k~~vl~~l~~~l~pgg~lv~r~  240 (286)
                        -.++|+||.++-.     +   ......+.|+|||+++.-.
T Consensus       209 ~~~~g~Dvvid~~g~-----~---~~~~~~~~l~~~G~iv~~G  243 (340)
T 3gms_A          209 TNGIGADAAIDSIGG-----P---DGNELAFSLRPNGHFLTIG  243 (340)
T ss_dssp             TTTSCEEEEEESSCH-----H---HHHHHHHTEEEEEEEEECC
T ss_pred             hCCCCCcEEEECCCC-----h---hHHHHHHHhcCCCEEEEEe
Confidence              1369999966432     1   1233458999999998865

>1f0y_A HCDH, L-3-hydroxyacyl-COA dehydrogenase; abortive ternary complex, oxidoreductase; HET: CAA NAD; 1.80A {Homo sapiens} SCOP: a.100.1.3 c.2.1.6 PDB: 3rqs_A 1lsj_A* 1il0_A* 1lso_A* 1m76_A* 1m75_A* 1f14_A 1f12_A 1f17_A* 3had_A* 2hdh_A* 3hdh_A*

Probab=97.49  E-value=0.00063  Score=61.53  Aligned_cols=99  Identities=16%  Similarity=0.141  Sum_probs=67.8

Q ss_pred             CCEEEEeccCCChhh-HHHHHhhcCCCcEEEEEeCChHHHHHHHHHHH-------hcCCCC-------------CCeEEE
Q 042119          131 PKKVAFVGSGPMPLT-SIIMAKHHLTSTHFDNFDIDEAANDVARSIVA-------SDAEFE-------------GRMKFL  189 (286)
Q Consensus       131 ~~~VL~IG~G~lp~t-ai~lA~~~~~g~~V~~iDid~~ai~~Ar~~~~-------~~g~l~-------------~~i~f~  189 (286)
                      -++|.+||+|.+|.+ +..+++   .|.+|+.+|++++.++.+++.++       +.|.+.             .++++.
T Consensus        15 ~~~I~VIG~G~mG~~iA~~la~---~G~~V~~~d~~~~~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~~~~~~i~~~   91 (302)
T 1f0y_A           15 VKHVTVIGGGLMGAGIAQVAAA---TGHTVVLVDQTEDILAKSKKGIEESLRKVAKKKFAENPKAGDEFVEKTLSTIATS   91 (302)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHH---TTCEEEEECSCHHHHHHHHHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHTEEEE
T ss_pred             CCEEEEECCCHHHHHHHHHHHh---CCCeEEEEECCHHHHHHHHHHHHHHHHHHHHcCCCCccccchhhHHHHHhceEEe
Confidence            368999999998874 444555   68899999999999998766433       233111             134442


Q ss_pred             EccccchhhcCCCcceeehhhhccCChhHHHHHHHHHHhhccCCcEEEE
Q 042119          190 TRDIMEVKEQLGEYDCIFLAALVGMSKEEKLTILGHIRKYMKDGGILLV  238 (286)
Q Consensus       190 ~~D~~~~~~~l~~fD~V~~aalvg~~~~~k~~vl~~l~~~l~pgg~lv~  238 (286)
                       .|.   ...+.+.|+|+.+.-  -+.+.|..+++++.+.++|+.+|+.
T Consensus        92 -~~~---~~~~~~aD~Vi~avp--~~~~~~~~v~~~l~~~~~~~~iv~s  134 (302)
T 1f0y_A           92 -TDA---ASVVHSTDLVVEAIV--ENLKVKNELFKRLDKFAAEHTIFAS  134 (302)
T ss_dssp             -SCH---HHHTTSCSEEEECCC--SCHHHHHHHHHHHTTTSCTTCEEEE
T ss_pred             -cCH---HHhhcCCCEEEEcCc--CcHHHHHHHHHHHHhhCCCCeEEEE
Confidence             333   224567999998742  2334578899999999999886653

>2b5w_A Glucose dehydrogenase; nucleotide binding motif, oxidoreductase; HET: FLC NAP; 1.60A {Haloferax mediterranei} PDB: 2b5v_A* 2vwg_A* 2vwh_A* 2vwp_A* 2vwq_A*

Probab=97.48  E-value=6.5e-05  Score=69.67  Aligned_cols=99  Identities=9%  Similarity=0.075  Sum_probs=68.3

Q ss_pred             CCCCC------CEEEEeccCCChhhH-HHHH-hhcCCCcE-EEEEeCChH---HHHHHHHHHHhcCCCCCCeEEEEcccc
Q 042119          127 GVVQP------KKVAFVGSGPMPLTS-IIMA-KHHLTSTH-FDNFDIDEA---ANDVARSIVASDAEFEGRMKFLTRDIM  194 (286)
Q Consensus       127 ~~~~~------~~VL~IG~G~lp~ta-i~lA-~~~~~g~~-V~~iDid~~---ai~~Ar~~~~~~g~l~~~i~f~~~D~~  194 (286)
                      .+.++      ++||.+|+|++|+.+ +.+| +  ..|++ |+++|.+++   ..+++++    +|.  +.+.+...|..
T Consensus       163 ~~~~g~~~~~~~~VlV~GaG~vG~~a~iqla~k--~~Ga~~Vi~~~~~~~~~~~~~~~~~----lGa--~~v~~~~~~~~  234 (357)
T 2b5w_A          163 YASRSAFDWDPSSAFVLGNGSLGLLTLAMLKVD--DKGYENLYCLGRRDRPDPTIDIIEE----LDA--TYVDSRQTPVE  234 (357)
T ss_dssp             HHTTTTSCCCCCEEEEECCSHHHHHHHHHHHHC--TTCCCEEEEEECCCSSCHHHHHHHH----TTC--EEEETTTSCGG
T ss_pred             CCCCCcccCCCCEEEEECCCHHHHHHHHHHHHH--HcCCcEEEEEeCCcccHHHHHHHHH----cCC--cccCCCccCHH
Confidence            34667      999999999999999 9999 8  36887 999999998   8877764    562  22211111221


Q ss_pred             chhhcCCCcceeehhhhccCChhHHHHHHHHHHhhccCCcEEEEee
Q 042119          195 EVKEQLGEYDCIFLAALVGMSKEEKLTILGHIRKYMKDGGILLVRS  240 (286)
Q Consensus       195 ~~~~~l~~fD~V~~aalvg~~~~~k~~vl~~l~~~l~pgg~lv~r~  240 (286)
                      ++....++||+||.+.-.     .  ..++...+.|+|||+++.-.
T Consensus       235 ~i~~~~gg~Dvvid~~g~-----~--~~~~~~~~~l~~~G~iv~~g  273 (357)
T 2b5w_A          235 DVPDVYEQMDFIYEATGF-----P--KHAIQSVQALAPNGVGALLG  273 (357)
T ss_dssp             GHHHHSCCEEEEEECSCC-----H--HHHHHHHHHEEEEEEEEECC
T ss_pred             HHHHhCCCCCEEEECCCC-----h--HHHHHHHHHHhcCCEEEEEe
Confidence            111111269999965421     1  35778889999999998865

>1iz0_A Quinone oxidoreductase; APO-enzyme, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.30A {Thermus thermophilus} SCOP: b.35.1.2 c.2.1.1 PDB: 1iyz_A 2cf2_D

Probab=97.48  E-value=0.00016  Score=65.27  Aligned_cols=95  Identities=11%  Similarity=0.062  Sum_probs=68.6

Q ss_pred             CCCCCEEEEecc-CCChhhHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEccccchhhcCCCccee
Q 042119          128 VVQPKKVAFVGS-GPMPLTSIIMAKHHLTSTHFDNFDIDEAANDVARSIVASDAEFEGRMKFLTRDIMEVKEQLGEYDCI  206 (286)
Q Consensus       128 ~~~~~~VL~IG~-G~lp~tai~lA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~g~l~~~i~f~~~D~~~~~~~l~~fD~V  206 (286)
                      ++++++||.+|+ |++|..++.+|+.  .|++|+++|.+++..+.+++    +|.  +. .+-..+..++...++++|+|
T Consensus       123 ~~~g~~vlV~Ga~G~vG~~~~~~a~~--~Ga~Vi~~~~~~~~~~~~~~----~ga--~~-~~~~~~~~~~~~~~~~~d~v  193 (302)
T 1iz0_A          123 ARPGEKVLVQAAAGALGTAAVQVARA--MGLRVLAAASRPEKLALPLA----LGA--EE-AATYAEVPERAKAWGGLDLV  193 (302)
T ss_dssp             CCTTCEEEESSTTBHHHHHHHHHHHH--TTCEEEEEESSGGGSHHHHH----TTC--SE-EEEGGGHHHHHHHTTSEEEE
T ss_pred             CCCCCEEEEECCCcHHHHHHHHHHHH--CCCEEEEEeCCHHHHHHHHh----cCC--CE-EEECCcchhHHHHhcCceEE
Confidence            788999999998 9999999999984  68999999999998887755    562  21 12111102223334679999


Q ss_pred             ehhhhccCChhHHHHHHHHHHhhccCCcEEEEee
Q 042119          207 FLAALVGMSKEEKLTILGHIRKYMKDGGILLVRS  240 (286)
Q Consensus       207 ~~aalvg~~~~~k~~vl~~l~~~l~pgg~lv~r~  240 (286)
                      |. +  |.      ..++...+.|++||+++.-.
T Consensus       194 id-~--g~------~~~~~~~~~l~~~G~~v~~g  218 (302)
T 1iz0_A          194 LE-V--RG------KEVEESLGLLAHGGRLVYIG  218 (302)
T ss_dssp             EE-C--SC------TTHHHHHTTEEEEEEEEEC-
T ss_pred             EE-C--CH------HHHHHHHHhhccCCEEEEEe
Confidence            96 3  32      25678889999999988754

>3c85_A Putative glutathione-regulated potassium-efflux S protein KEFB; TRKA domain; HET: AMP; 1.90A {Vibrio parahaemolyticus rimd 2210633}

Probab=97.44  E-value=0.00056  Score=57.00  Aligned_cols=96  Identities=14%  Similarity=0.111  Sum_probs=63.7

Q ss_pred             CCCEEEEeccCCChhhHHHHHhhcCC-CcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEccccch---hh--cCCCc
Q 042119          130 QPKKVAFVGSGPMPLTSIIMAKHHLT-STHFDNFDIDEAANDVARSIVASDAEFEGRMKFLTRDIMEV---KE--QLGEY  203 (286)
Q Consensus       130 ~~~~VL~IG~G~lp~tai~lA~~~~~-g~~V~~iDid~~ai~~Ar~~~~~~g~l~~~i~f~~~D~~~~---~~--~l~~f  203 (286)
                      .+++|+.+|+|.+|.......+.  . |.+|+++|.|++.++.+++    .|     +.++.+|..+.   ..  ...++
T Consensus        38 ~~~~v~IiG~G~~G~~~a~~L~~--~~g~~V~vid~~~~~~~~~~~----~g-----~~~~~gd~~~~~~l~~~~~~~~a  106 (183)
T 3c85_A           38 GHAQVLILGMGRIGTGAYDELRA--RYGKISLGIEIREEAAQQHRS----EG-----RNVISGDATDPDFWERILDTGHV  106 (183)
T ss_dssp             TTCSEEEECCSHHHHHHHHHHHH--HHCSCEEEEESCHHHHHHHHH----TT-----CCEEECCTTCHHHHHTBCSCCCC
T ss_pred             CCCcEEEECCCHHHHHHHHHHHh--ccCCeEEEEECCHHHHHHHHH----CC-----CCEEEcCCCCHHHHHhccCCCCC
Confidence            35799999999888765554442  5 7899999999988766543    45     34667787542   12  25679


Q ss_pred             ceeehhhhccCChhHHHHHHHHHHhhccCCcEEEEee
Q 042119          204 DCIFLAALVGMSKEEKLTILGHIRKYMKDGGILLVRS  240 (286)
Q Consensus       204 D~V~~aalvg~~~~~k~~vl~~l~~~l~pgg~lv~r~  240 (286)
                      |+|+.+.-   + ......+-...+.+.|++.++++.
T Consensus       107 d~vi~~~~---~-~~~~~~~~~~~~~~~~~~~ii~~~  139 (183)
T 3c85_A          107 KLVLLAMP---H-HQGNQTALEQLQRRNYKGQIAAIA  139 (183)
T ss_dssp             CEEEECCS---S-HHHHHHHHHHHHHTTCCSEEEEEE
T ss_pred             CEEEEeCC---C-hHHHHHHHHHHHHHCCCCEEEEEE
Confidence            99986532   1 122223334566778888888875

>2hcy_A Alcohol dehydrogenase 1; tetramer of asymmetric dimers, zinc coordination, intramolec disulfide bonds, oxidoreductase; HET: 8ID; 2.44A {Saccharomyces cerevisiae}

Probab=97.43  E-value=0.00025  Score=65.30  Aligned_cols=104  Identities=15%  Similarity=0.172  Sum_probs=71.9

Q ss_pred             HHHHhcCCCCCCEEEEecc-CCChhhHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEc---cccch
Q 042119          121 TILSENGVVQPKKVAFVGS-GPMPLTSIIMAKHHLTSTHFDNFDIDEAANDVARSIVASDAEFEGRMKFLTR---DIMEV  196 (286)
Q Consensus       121 ~~l~~~~~~~~~~VL~IG~-G~lp~tai~lA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~g~l~~~i~f~~~---D~~~~  196 (286)
                      .++.+..+.++++||.+|+ |++|..++.+|+.  .|++|+++|.+++..+.+++    +|.   ...+-..   |..+.
T Consensus       160 ~~l~~~~~~~g~~vlV~Ga~ggiG~~~~~~a~~--~Ga~V~~~~~~~~~~~~~~~----~g~---~~~~d~~~~~~~~~~  230 (347)
T 2hcy_A          160 KALKSANLMAGHWVAISGAAGGLGSLAVQYAKA--MGYRVLGIDGGEGKEELFRS----IGG---EVFIDFTKEKDIVGA  230 (347)
T ss_dssp             HHHHTTTCCTTCEEEEETTTSHHHHHHHHHHHH--TTCEEEEEECSTTHHHHHHH----TTC---CEEEETTTCSCHHHH
T ss_pred             HHHHhcCCCCCCEEEEECCCchHHHHHHHHHHH--CCCcEEEEcCCHHHHHHHHH----cCC---ceEEecCccHhHHHH
Confidence            4455556788999999999 7889988888884  68999999999998877665    462   2222111   11111


Q ss_pred             hhcC--CCcceeehhhhccCChhHHHHHHHHHHhhccCCcEEEEee
Q 042119          197 KEQL--GEYDCIFLAALVGMSKEEKLTILGHIRKYMKDGGILLVRS  240 (286)
Q Consensus       197 ~~~l--~~fD~V~~aalvg~~~~~k~~vl~~l~~~l~pgg~lv~r~  240 (286)
                      ....  +++|+|+.++..       ...++...+.|++||+++.-.
T Consensus       231 ~~~~~~~~~D~vi~~~g~-------~~~~~~~~~~l~~~G~iv~~g  269 (347)
T 2hcy_A          231 VLKATDGGAHGVINVSVS-------EAAIEASTRYVRANGTTVLVG  269 (347)
T ss_dssp             HHHHHTSCEEEEEECSSC-------HHHHHHHTTSEEEEEEEEECC
T ss_pred             HHHHhCCCCCEEEECCCc-------HHHHHHHHHHHhcCCEEEEEe
Confidence            1111  269999866431       146788899999999998765

>2eih_A Alcohol dehydrogenase; zinc ION binding protein, structural genomics, NPPSFA, natio project on protein structural and functional analyses; 2.30A {Thermus thermophilus}

Probab=97.43  E-value=0.00014  Score=66.96  Aligned_cols=97  Identities=14%  Similarity=0.067  Sum_probs=68.9

Q ss_pred             CCCCCCEEEEecc-CCChhhHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEc--cccc-hhhc--C
Q 042119          127 GVVQPKKVAFVGS-GPMPLTSIIMAKHHLTSTHFDNFDIDEAANDVARSIVASDAEFEGRMKFLTR--DIME-VKEQ--L  200 (286)
Q Consensus       127 ~~~~~~~VL~IG~-G~lp~tai~lA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~g~l~~~i~f~~~--D~~~-~~~~--l  200 (286)
                      .+.++++||.+|+ |++|..++.+|+.  .|++|+++|.+++..+.+++    +|.  + ..+-..  |..+ +...  -
T Consensus       163 ~~~~g~~vlV~Gasg~iG~~~~~~a~~--~G~~Vi~~~~~~~~~~~~~~----~ga--~-~~~d~~~~~~~~~~~~~~~~  233 (343)
T 2eih_A          163 GVRPGDDVLVMAAGSGVSVAAIQIAKL--FGARVIATAGSEDKLRRAKA----LGA--D-ETVNYTHPDWPKEVRRLTGG  233 (343)
T ss_dssp             CCCTTCEEEECSTTSTTHHHHHHHHHH--TTCEEEEEESSHHHHHHHHH----HTC--S-EEEETTSTTHHHHHHHHTTT
T ss_pred             CCCCCCEEEEECCCchHHHHHHHHHHH--CCCEEEEEeCCHHHHHHHHh----cCC--C-EEEcCCcccHHHHHHHHhCC
Confidence            5688999999999 9999999999984  68999999999999888865    462  2 112111  1111 1111  1


Q ss_pred             CCcceeehhhhccCChhHHHHHHHHHHhhccCCcEEEEee
Q 042119          201 GEYDCIFLAALVGMSKEEKLTILGHIRKYMKDGGILLVRS  240 (286)
Q Consensus       201 ~~fD~V~~aalvg~~~~~k~~vl~~l~~~l~pgg~lv~r~  240 (286)
                      .++|+|+.++- +       ..++...+.|++||+++.-.
T Consensus       234 ~~~d~vi~~~g-~-------~~~~~~~~~l~~~G~~v~~g  265 (343)
T 2eih_A          234 KGADKVVDHTG-A-------LYFEGVIKATANGGRIAIAG  265 (343)
T ss_dssp             TCEEEEEESSC-S-------SSHHHHHHHEEEEEEEEESS
T ss_pred             CCceEEEECCC-H-------HHHHHHHHhhccCCEEEEEe
Confidence            36999996643 2       24667888999999998865

>4dup_A Quinone oxidoreductase; PSI-biology, structural genomics, protein structure initiati structural genomics research consortium, nysgrc; 2.45A {Rhizobium etli}

Probab=97.43  E-value=0.00011  Score=68.05  Aligned_cols=101  Identities=12%  Similarity=0.099  Sum_probs=70.2

Q ss_pred             hcCCCCCCEEEEe-ccCCChhhHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEccccchhhc--CC
Q 042119          125 ENGVVQPKKVAFV-GSGPMPLTSIIMAKHHLTSTHFDNFDIDEAANDVARSIVASDAEFEGRMKFLTRDIMEVKEQ--LG  201 (286)
Q Consensus       125 ~~~~~~~~~VL~I-G~G~lp~tai~lA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~g~l~~~i~f~~~D~~~~~~~--l~  201 (286)
                      ...++++++||.+ |+|++|..++.+|+.  .|++|+++|.+++..+.+++    +|. ..-+.....|..+....  -.
T Consensus       162 ~~~~~~g~~VlV~Gg~g~iG~~~~~~a~~--~Ga~Vi~~~~~~~~~~~~~~----lGa-~~~~~~~~~~~~~~~~~~~~~  234 (353)
T 4dup_A          162 MAGLTEGESVLIHGGTSGIGTTAIQLARA--FGAEVYATAGSTGKCEACER----LGA-KRGINYRSEDFAAVIKAETGQ  234 (353)
T ss_dssp             TTCCCTTCEEEESSTTSHHHHHHHHHHHH--TTCEEEEEESSHHHHHHHHH----HTC-SEEEETTTSCHHHHHHHHHSS
T ss_pred             hcCCCCCCEEEEEcCCCHHHHHHHHHHHH--cCCEEEEEeCCHHHHHHHHh----cCC-CEEEeCCchHHHHHHHHHhCC
Confidence            4456899999999 689999999999984  79999999999999888876    452 11111111111111111  23


Q ss_pred             CcceeehhhhccCChhHHHHHHHHHHhhccCCcEEEEee
Q 042119          202 EYDCIFLAALVGMSKEEKLTILGHIRKYMKDGGILLVRS  240 (286)
Q Consensus       202 ~fD~V~~aalvg~~~~~k~~vl~~l~~~l~pgg~lv~r~  240 (286)
                      ++|+||.++-.        ..++...+.|++||+++.-.
T Consensus       235 g~Dvvid~~g~--------~~~~~~~~~l~~~G~iv~~g  265 (353)
T 4dup_A          235 GVDIILDMIGA--------AYFERNIASLAKDGCLSIIA  265 (353)
T ss_dssp             CEEEEEESCCG--------GGHHHHHHTEEEEEEEEECC
T ss_pred             CceEEEECCCH--------HHHHHHHHHhccCCEEEEEE
Confidence            69999966431        15677888999999998865

>3gaz_A Alcohol dehydrogenase superfamily protein; oxidoreductase, PSI-II, alcohol dehydrogenase superf structural genomics; 1.96A {Novosphingobium aromaticivorans}

Probab=97.43  E-value=0.00014  Score=67.12  Aligned_cols=99  Identities=13%  Similarity=0.101  Sum_probs=69.5

Q ss_pred             HhcCCCCCCEEEEec-cCCChhhHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEccccchhh---c
Q 042119          124 SENGVVQPKKVAFVG-SGPMPLTSIIMAKHHLTSTHFDNFDIDEAANDVARSIVASDAEFEGRMKFLTRDIMEVKE---Q  199 (286)
Q Consensus       124 ~~~~~~~~~~VL~IG-~G~lp~tai~lA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~g~l~~~i~f~~~D~~~~~~---~  199 (286)
                      .+..+.++++||.+| +|++|+.++.+|+.  .|++|+++ .+++..+.+++    +| ... +. ...|..+...   .
T Consensus       144 ~~~~~~~g~~VlV~Ga~g~iG~~~~q~a~~--~Ga~Vi~~-~~~~~~~~~~~----lG-a~~-i~-~~~~~~~~~~~~~~  213 (343)
T 3gaz_A          144 DRAQVQDGQTVLIQGGGGGVGHVAIQIALA--RGARVFAT-ARGSDLEYVRD----LG-ATP-ID-ASREPEDYAAEHTA  213 (343)
T ss_dssp             TTTCCCTTCEEEEETTTSHHHHHHHHHHHH--TTCEEEEE-ECHHHHHHHHH----HT-SEE-EE-TTSCHHHHHHHHHT
T ss_pred             HhcCCCCCCEEEEecCCCHHHHHHHHHHHH--CCCEEEEE-eCHHHHHHHHH----cC-CCE-ec-cCCCHHHHHHHHhc
Confidence            345568899999999 79999999999994  78999999 88888777655    56 222 22 1112111111   1


Q ss_pred             CCCcceeehhhhccCChhHHHHHHHHHHhhccCCcEEEEee
Q 042119          200 LGEYDCIFLAALVGMSKEEKLTILGHIRKYMKDGGILLVRS  240 (286)
Q Consensus       200 l~~fD~V~~aalvg~~~~~k~~vl~~l~~~l~pgg~lv~r~  240 (286)
                      -.++|+||.++  |    .  ..++...+.|+|||.++.-.
T Consensus       214 ~~g~D~vid~~--g----~--~~~~~~~~~l~~~G~iv~~g  246 (343)
T 3gaz_A          214 GQGFDLVYDTL--G----G--PVLDASFSAVKRFGHVVSCL  246 (343)
T ss_dssp             TSCEEEEEESS--C----T--HHHHHHHHHEEEEEEEEESC
T ss_pred             CCCceEEEECC--C----c--HHHHHHHHHHhcCCeEEEEc
Confidence            13699999654  3    1  36778888999999998754

>3tka_A Ribosomal RNA small subunit methyltransferase H; HET: SAM CTN PG4; 2.25A {Escherichia coli}

Probab=97.42  E-value=0.00016  Score=67.47  Aligned_cols=77  Identities=18%  Similarity=0.147  Sum_probs=58.8

Q ss_pred             CCCCCCEEEEeccCCChhhHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEccccchhh---c--CC
Q 042119          127 GVVQPKKVAFVGSGPMPLTSIIMAKHHLTSTHFDNFDIDEAANDVARSIVASDAEFEGRMKFLTRDIMEVKE---Q--LG  201 (286)
Q Consensus       127 ~~~~~~~VL~IG~G~lp~tai~lA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~g~l~~~i~f~~~D~~~~~~---~--l~  201 (286)
                      .+.++..++|..+|.+|-|...+.+ ..++++|+|+|+||+|++.|+++    .  .+|++++.++..++..   .  +.
T Consensus        54 ~i~pggiyVD~TlG~GGHS~~iL~~-lg~~GrVig~D~Dp~Al~~A~rL----~--~~Rv~lv~~nF~~l~~~L~~~g~~  126 (347)
T 3tka_A           54 NIRPDGIYIDGTFGRGGHSRLILSQ-LGEEGRLLAIDRDPQAIAVAKTI----D--DPRFSIIHGPFSALGEYVAERDLI  126 (347)
T ss_dssp             CCCTTCEEEESCCTTSHHHHHHHTT-CCTTCEEEEEESCHHHHHHHTTC----C--CTTEEEEESCGGGHHHHHHHTTCT
T ss_pred             CCCCCCEEEEeCcCCCHHHHHHHHh-CCCCCEEEEEECCHHHHHHHHhh----c--CCcEEEEeCCHHHHHHHHHhcCCC
Confidence            5688999999999987777655543 55789999999999999999532    2  3799999999877643   2  22


Q ss_pred             -Ccceeehhh
Q 042119          202 -EYDCIFLAA  210 (286)
Q Consensus       202 -~fD~V~~aa  210 (286)
                       .+|.|+++-
T Consensus       127 ~~vDgILfDL  136 (347)
T 3tka_A          127 GKIDGILLDL  136 (347)
T ss_dssp             TCEEEEEEEC
T ss_pred             CcccEEEECC
Confidence             478876654

>3fbg_A Putative arginate lyase; structural genomics, unknown function, PSI-2, protein structure initiative; 1.60A {Staphylococcus haemolyticus}

Probab=97.42  E-value=0.00018  Score=66.36  Aligned_cols=94  Identities=10%  Similarity=0.088  Sum_probs=67.0

Q ss_pred             CCCEEEEe-ccCCChhhHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEE-ccccchhh--cCCCcce
Q 042119          130 QPKKVAFV-GSGPMPLTSIIMAKHHLTSTHFDNFDIDEAANDVARSIVASDAEFEGRMKFLT-RDIMEVKE--QLGEYDC  205 (286)
Q Consensus       130 ~~~~VL~I-G~G~lp~tai~lA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~g~l~~~i~f~~-~D~~~~~~--~l~~fD~  205 (286)
                      ++++||.+ |+|++|+.++.+|+.  .|++|+++|.+++..+.+++    +|.  +.+ +.. .|..+...  .-.+||+
T Consensus       150 ~g~~VlV~gg~G~vG~~a~qla~~--~Ga~Vi~~~~~~~~~~~~~~----lGa--~~v-i~~~~~~~~~~~~~~~~g~Dv  220 (346)
T 3fbg_A          150 EGKTLLIINGAGGVGSIATQIAKA--YGLRVITTASRNETIEWTKK----MGA--DIV-LNHKESLLNQFKTQGIELVDY  220 (346)
T ss_dssp             TTCEEEEESTTSHHHHHHHHHHHH--TTCEEEEECCSHHHHHHHHH----HTC--SEE-ECTTSCHHHHHHHHTCCCEEE
T ss_pred             CCCEEEEEcCCCHHHHHHHHHHHH--cCCEEEEEeCCHHHHHHHHh----cCC--cEE-EECCccHHHHHHHhCCCCccE
Confidence            78999999 799999999999994  78999999999999888877    452  211 111 11111111  1236999


Q ss_pred             eehhhhccCChhHHHHHHHHHHhhccCCcEEEEe
Q 042119          206 IFLAALVGMSKEEKLTILGHIRKYMKDGGILLVR  239 (286)
Q Consensus       206 V~~aalvg~~~~~k~~vl~~l~~~l~pgg~lv~r  239 (286)
                      ||.+.-       -...++...+.|+|||+++.-
T Consensus       221 v~d~~g-------~~~~~~~~~~~l~~~G~iv~~  247 (346)
T 3fbg_A          221 VFCTFN-------TDMYYDDMIQLVKPRGHIATI  247 (346)
T ss_dssp             EEESSC-------HHHHHHHHHHHEEEEEEEEES
T ss_pred             EEECCC-------chHHHHHHHHHhccCCEEEEE
Confidence            996542       124667888999999999764

>2eez_A Alanine dehydrogenase; TTHA0216, structural genomic NPPSFA, national project on protein structural and function analyses; 2.71A {Thermus thermophilus}

Probab=97.39  E-value=0.00013  Score=68.34  Aligned_cols=103  Identities=18%  Similarity=0.266  Sum_probs=68.3

Q ss_pred             CCCCEEEEeccCCChhhHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEccccchhhcCCCcceeeh
Q 042119          129 VQPKKVAFVGSGPMPLTSIIMAKHHLTSTHFDNFDIDEAANDVARSIVASDAEFEGRMKFLTRDIMEVKEQLGEYDCIFL  208 (286)
Q Consensus       129 ~~~~~VL~IG~G~lp~tai~lA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~g~l~~~i~f~~~D~~~~~~~l~~fD~V~~  208 (286)
                      -++++|+.+|+|++|..+..+++.  .|++|+++|++++..+.+++.   .|   ..+.....+..++...+.++|+|+.
T Consensus       164 l~~~~V~ViGaG~iG~~~a~~l~~--~Ga~V~~~d~~~~~~~~~~~~---~g---~~~~~~~~~~~~l~~~~~~~DvVi~  235 (369)
T 2eez_A          164 VAPASVVILGGGTVGTNAAKIALG--MGAQVTILDVNHKRLQYLDDV---FG---GRVITLTATEANIKKSVQHADLLIG  235 (369)
T ss_dssp             BCCCEEEEECCSHHHHHHHHHHHH--TTCEEEEEESCHHHHHHHHHH---TT---TSEEEEECCHHHHHHHHHHCSEEEE
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHh--CCCEEEEEECCHHHHHHHHHh---cC---ceEEEecCCHHHHHHHHhCCCEEEE
Confidence            356999999999999988888874  789999999999887766543   45   2343333333333333357899987


Q ss_pred             hhhccCChhHHHHHHHHHHhhccCCcEEEEee
Q 042119          209 AALVGMSKEEKLTILGHIRKYMKDGGILLVRS  240 (286)
Q Consensus       209 aalvg~~~~~k~~vl~~l~~~l~pgg~lv~r~  240 (286)
                      ++..... ....-+.+...+.|+|||+++.-+
T Consensus       236 ~~g~~~~-~~~~li~~~~l~~mk~gg~iV~v~  266 (369)
T 2eez_A          236 AVLVPGA-KAPKLVTRDMLSLMKEGAVIVDVA  266 (369)
T ss_dssp             CCC--------CCSCHHHHTTSCTTCEEEECC
T ss_pred             CCCCCcc-ccchhHHHHHHHhhcCCCEEEEEe
Confidence            6544210 111113567788999999988765

>4e12_A Diketoreductase; oxidoreductase, NADH; HET: 1PE; 1.93A {Acinetobacter baylyi} PDB: 4dyd_A* 4e13_A*

Probab=97.38  E-value=0.0005  Score=61.82  Aligned_cols=99  Identities=16%  Similarity=0.241  Sum_probs=69.2

Q ss_pred             CEEEEeccCCChhhHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhc---------CCCC--------CCeEEEEcccc
Q 042119          132 KKVAFVGSGPMPLTSIIMAKHHLTSTHFDNFDIDEAANDVARSIVASD---------AEFE--------GRMKFLTRDIM  194 (286)
Q Consensus       132 ~~VL~IG~G~lp~tai~lA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~---------g~l~--------~~i~f~~~D~~  194 (286)
                      ++|.+||+|.+|........  ..|.+|+.+|++++.++.+++.+.+.         + +.        .++++ +.|. 
T Consensus         5 ~kV~VIGaG~mG~~iA~~la--~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~-~~~~~~~~~~~~i~~-~~~~-   79 (283)
T 4e12_A            5 TNVTVLGTGVLGSQIAFQTA--FHGFAVTAYDINTDALDAAKKRFEGLAAVYEKEVAG-AADGAAQKALGGIRY-SDDL-   79 (283)
T ss_dssp             CEEEEECCSHHHHHHHHHHH--HTTCEEEEECSSHHHHHHHHHHHHHHHHHHHHHSTT-CTTTHHHHHHHHCEE-ESCH-
T ss_pred             CEEEEECCCHHHHHHHHHHH--hCCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHhccc-CCHHHHHHHHcCeEE-eCCH-
Confidence            68999999998876443333  26899999999999999888764321         1 11        12343 2333 


Q ss_pred             chhhcCCCcceeehhhhccCChhHHHHHHHHHHhhccCCcEEEEe
Q 042119          195 EVKEQLGEYDCIFLAALVGMSKEEKLTILGHIRKYMKDGGILLVR  239 (286)
Q Consensus       195 ~~~~~l~~fD~V~~aalvg~~~~~k~~vl~~l~~~l~pgg~lv~r  239 (286)
                        ...+.+.|+|+.+..  .+.+.|..+++++.+.++|+.+++-.
T Consensus        80 --~~~~~~aDlVi~av~--~~~~~~~~v~~~l~~~~~~~~il~s~  120 (283)
T 4e12_A           80 --AQAVKDADLVIEAVP--ESLDLKRDIYTKLGELAPAKTIFATN  120 (283)
T ss_dssp             --HHHTTTCSEEEECCC--SCHHHHHHHHHHHHHHSCTTCEEEEC
T ss_pred             --HHHhccCCEEEEecc--CcHHHHHHHHHHHHhhCCCCcEEEEC
Confidence              223467999998743  34458889999999999999887643

>3nx4_A Putative oxidoreductase; csgid, structural genomics, center for struc genomics of infectious diseases, PSI, protein structure INI; HET: MSE NAP; 1.90A {Salmonella enterica subsp} PDB: 1o89_A 1o8c_A*

Probab=97.38  E-value=0.00011  Score=66.76  Aligned_cols=98  Identities=14%  Similarity=0.224  Sum_probs=68.4

Q ss_pred             hcCCCCCC-EEEEecc-CCChhhHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEccccchhhcC--
Q 042119          125 ENGVVQPK-KVAFVGS-GPMPLTSIIMAKHHLTSTHFDNFDIDEAANDVARSIVASDAEFEGRMKFLTRDIMEVKEQL--  200 (286)
Q Consensus       125 ~~~~~~~~-~VL~IG~-G~lp~tai~lA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~g~l~~~i~f~~~D~~~~~~~l--  200 (286)
                      +.+..+++ +||.+|+ |++|+.++.+|+.  .|++|+++|.+++..+++++    +|.  + -.+-..|... ...+  
T Consensus       140 ~~~~~~~~g~VlV~Ga~G~vG~~aiqla~~--~Ga~Vi~~~~~~~~~~~~~~----lGa--~-~vi~~~~~~~-~~~~~~  209 (324)
T 3nx4_A          140 DAGIRPQDGEVVVTGASGGVGSTAVALLHK--LGYQVAAVSGRESTHGYLKS----LGA--N-RILSRDEFAE-SRPLEK  209 (324)
T ss_dssp             HTTCCGGGCCEEESSTTSHHHHHHHHHHHH--TTCCEEEEESCGGGHHHHHH----HTC--S-EEEEGGGSSC-CCSSCC
T ss_pred             hcccCCCCCeEEEECCCcHHHHHHHHHHHH--cCCEEEEEeCCHHHHHHHHh----cCC--C-EEEecCCHHH-HHhhcC
Confidence            44444422 4999998 9999999999994  78999999999999888876    462  2 1222222111 1111  


Q ss_pred             CCcceeehhhhccCChhHHHHHHHHHHhhccCCcEEEEee
Q 042119          201 GEYDCIFLAALVGMSKEEKLTILGHIRKYMKDGGILLVRS  240 (286)
Q Consensus       201 ~~fD~V~~aalvg~~~~~k~~vl~~l~~~l~pgg~lv~r~  240 (286)
                      +++|+||.+.  |    .  ..++...+.|+|||+++.-.
T Consensus       210 ~~~d~v~d~~--g----~--~~~~~~~~~l~~~G~iv~~G  241 (324)
T 3nx4_A          210 QLWAGAIDTV--G----D--KVLAKVLAQMNYGGCVAACG  241 (324)
T ss_dssp             CCEEEEEESS--C----H--HHHHHHHHTEEEEEEEEECC
T ss_pred             CCccEEEECC--C----c--HHHHHHHHHHhcCCEEEEEe
Confidence            3699988653  2    1  27888999999999998865

>2vn8_A Reticulon-4-interacting protein 1; mitochondrion, transit peptide, receptor inhibitor; HET: NDP CIT; 2.1A {Homo sapiens}

Probab=97.38  E-value=0.00016  Score=67.44  Aligned_cols=99  Identities=15%  Similarity=0.128  Sum_probs=65.8

Q ss_pred             CCCCCEEEEec-cCCChhhHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEccccchhhcCCCccee
Q 042119          128 VVQPKKVAFVG-SGPMPLTSIIMAKHHLTSTHFDNFDIDEAANDVARSIVASDAEFEGRMKFLTRDIMEVKEQLGEYDCI  206 (286)
Q Consensus       128 ~~~~~~VL~IG-~G~lp~tai~lA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~g~l~~~i~f~~~D~~~~~~~l~~fD~V  206 (286)
                      +.++++||..| +|++|..++.+|+.  .|++|++++ +++..+.++    ++|. ..-+.....|..+......++|+|
T Consensus       181 ~~~g~~VlV~Ga~G~vG~~~~qla~~--~Ga~Vi~~~-~~~~~~~~~----~lGa-~~v~~~~~~~~~~~~~~~~g~D~v  252 (375)
T 2vn8_A          181 NCTGKRVLILGASGGVGTFAIQVMKA--WDAHVTAVC-SQDASELVR----KLGA-DDVIDYKSGSVEEQLKSLKPFDFI  252 (375)
T ss_dssp             TCTTCEEEEETTTSHHHHHHHHHHHH--TTCEEEEEE-CGGGHHHHH----HTTC-SEEEETTSSCHHHHHHTSCCBSEE
T ss_pred             cCCCCEEEEECCCCHHHHHHHHHHHh--CCCEEEEEe-ChHHHHHHH----HcCC-CEEEECCchHHHHHHhhcCCCCEE
Confidence            67899999999 79999999999994  689999999 677666554    4672 111111111221112223579999


Q ss_pred             ehhhhccCChhHHHHHHHHHHhhccCCcEEEEee
Q 042119          207 FLAALVGMSKEEKLTILGHIRKYMKDGGILLVRS  240 (286)
Q Consensus       207 ~~aalvg~~~~~k~~vl~~l~~~l~pgg~lv~r~  240 (286)
                      |.++-.     . ...++...+.+++||+++.-.
T Consensus       253 id~~g~-----~-~~~~~~~~~~l~~~G~iv~~g  280 (375)
T 2vn8_A          253 LDNVGG-----S-TETWAPDFLKKWSGATYVTLV  280 (375)
T ss_dssp             EESSCT-----T-HHHHGGGGBCSSSCCEEEESC
T ss_pred             EECCCC-----h-hhhhHHHHHhhcCCcEEEEeC
Confidence            966431     1 124566778899999998754

>2j3h_A NADP-dependent oxidoreductase P1; double bond reductase (AT5G16970), APO form; 2.5A {Arabidopsis thaliana} PDB: 2j3i_A* 2j3j_A* 2j3k_A*

Probab=97.38  E-value=0.00027  Score=64.77  Aligned_cols=100  Identities=13%  Similarity=0.028  Sum_probs=69.9

Q ss_pred             hcCCCCCCEEEEecc-CCChhhHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEc---cccchhhcC
Q 042119          125 ENGVVQPKKVAFVGS-GPMPLTSIIMAKHHLTSTHFDNFDIDEAANDVARSIVASDAEFEGRMKFLTR---DIMEVKEQL  200 (286)
Q Consensus       125 ~~~~~~~~~VL~IG~-G~lp~tai~lA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~g~l~~~i~f~~~---D~~~~~~~l  200 (286)
                      ...+.++++||.+|+ |++|..++.+|+.  .|++|+++|.+++..+.+++   ++|.   ...+-..   |..+.....
T Consensus       150 ~~~~~~g~~vlI~Ga~g~iG~~~~~~a~~--~G~~V~~~~~~~~~~~~~~~---~~g~---~~~~d~~~~~~~~~~~~~~  221 (345)
T 2j3h_A          150 VCSPKEGETVYVSAASGAVGQLVGQLAKM--MGCYVVGSAGSKEKVDLLKT---KFGF---DDAFNYKEESDLTAALKRC  221 (345)
T ss_dssp             TSCCCTTCEEEESSTTSHHHHHHHHHHHH--TTCEEEEEESSHHHHHHHHH---TSCC---SEEEETTSCSCSHHHHHHH
T ss_pred             HhCCCCCCEEEEECCCcHHHHHHHHHHHH--CCCEEEEEeCCHHHHHHHHH---HcCC---ceEEecCCHHHHHHHHHHH
Confidence            346788999999996 9899999999984  78999999999988877763   3562   2222111   111111111


Q ss_pred             --CCcceeehhhhccCChhHHHHHHHHHHhhccCCcEEEEee
Q 042119          201 --GEYDCIFLAALVGMSKEEKLTILGHIRKYMKDGGILLVRS  240 (286)
Q Consensus       201 --~~fD~V~~aalvg~~~~~k~~vl~~l~~~l~pgg~lv~r~  240 (286)
                        +++|+|+.++-      .  ..++...+.|+|||++++-.
T Consensus       222 ~~~~~d~vi~~~g------~--~~~~~~~~~l~~~G~~v~~G  255 (345)
T 2j3h_A          222 FPNGIDIYFENVG------G--KMLDAVLVNMNMHGRIAVCG  255 (345)
T ss_dssp             CTTCEEEEEESSC------H--HHHHHHHTTEEEEEEEEECC
T ss_pred             hCCCCcEEEECCC------H--HHHHHHHHHHhcCCEEEEEc
Confidence              36999986542      1  36788899999999998754

>1jvb_A NAD(H)-dependent alcohol dehydrogenase; archaeon, zinc, oxidoreductase; HET: MSE; 1.85A {Sulfolobus solfataricus} SCOP: b.35.1.2 c.2.1.1 PDB: 1r37_A* 1nto_A 1nvg_A 3i4c_A 2eer_A*

Probab=97.38  E-value=0.0001  Score=67.99  Aligned_cols=105  Identities=13%  Similarity=0.146  Sum_probs=72.5

Q ss_pred             HHHHhcCCCCCCEEEEeccC-CChhhHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEcccc--c-h
Q 042119          121 TILSENGVVQPKKVAFVGSG-PMPLTSIIMAKHHLTSTHFDNFDIDEAANDVARSIVASDAEFEGRMKFLTRDIM--E-V  196 (286)
Q Consensus       121 ~~l~~~~~~~~~~VL~IG~G-~lp~tai~lA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~g~l~~~i~f~~~D~~--~-~  196 (286)
                      .++.+..++++++||.+|+| ++|..++.+|+. ..|++|+++|.+++..+.+++    +|.   ...+...|..  + +
T Consensus       161 ~~l~~~~~~~g~~vlV~Gagg~iG~~~~~~a~~-~~Ga~Vi~~~~~~~~~~~~~~----~g~---~~~~~~~~~~~~~~~  232 (347)
T 1jvb_A          161 RAVRKASLDPTKTLLVVGAGGGLGTMAVQIAKA-VSGATIIGVDVREEAVEAAKR----AGA---DYVINASMQDPLAEI  232 (347)
T ss_dssp             HHHHHTTCCTTCEEEEETTTSHHHHHHHHHHHH-HTCCEEEEEESSHHHHHHHHH----HTC---SEEEETTTSCHHHHH
T ss_pred             HHHHhcCCCCCCEEEEECCCccHHHHHHHHHHH-cCCCeEEEEcCCHHHHHHHHH----hCC---CEEecCCCccHHHHH
Confidence            34455667899999999999 889989999884 228999999999999888765    452   2222222210  0 1


Q ss_pred             hhcC--CCcceeehhhhccCChhHHHHHHHHHHhhccCCcEEEEee
Q 042119          197 KEQL--GEYDCIFLAALVGMSKEEKLTILGHIRKYMKDGGILLVRS  240 (286)
Q Consensus       197 ~~~l--~~fD~V~~aalvg~~~~~k~~vl~~l~~~l~pgg~lv~r~  240 (286)
                      ....  +.+|+||.++-.       ...++...+.|+|||+++.-.
T Consensus       233 ~~~~~~~~~d~vi~~~g~-------~~~~~~~~~~l~~~G~iv~~g  271 (347)
T 1jvb_A          233 RRITESKGVDAVIDLNNS-------EKTLSVYPKALAKQGKYVMVG  271 (347)
T ss_dssp             HHHTTTSCEEEEEESCCC-------HHHHTTGGGGEEEEEEEEECC
T ss_pred             HHHhcCCCceEEEECCCC-------HHHHHHHHHHHhcCCEEEEEC
Confidence            1111  379999966431       136778889999999998864

>1v3u_A Leukotriene B4 12- hydroxydehydrogenase/prostaglandin 15-keto reductase; rossmann fold, riken structural genomics/proteomics initiative, RSGI; 2.00A {Cavia porcellus} SCOP: b.35.1.2 c.2.1.1 PDB: 1v3t_A 1v3v_A* 2dm6_A* 1zsv_A 2y05_A*

Probab=97.35  E-value=0.00016  Score=66.08  Aligned_cols=99  Identities=18%  Similarity=0.170  Sum_probs=68.8

Q ss_pred             hcCCCCCCEEEEecc-CCChhhHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEcc---ccchhhc-
Q 042119          125 ENGVVQPKKVAFVGS-GPMPLTSIIMAKHHLTSTHFDNFDIDEAANDVARSIVASDAEFEGRMKFLTRD---IMEVKEQ-  199 (286)
Q Consensus       125 ~~~~~~~~~VL~IG~-G~lp~tai~lA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~g~l~~~i~f~~~D---~~~~~~~-  199 (286)
                      ...+.++++||..|+ |++|..++.+++.  .|++|+++|.+++..+.+++    +| .  ...+-..|   ..+.... 
T Consensus       140 ~~~~~~g~~vlV~Ga~ggiG~~~~~~~~~--~G~~V~~~~~~~~~~~~~~~----~g-~--~~~~d~~~~~~~~~~~~~~  210 (333)
T 1v3u_A          140 VCGVKGGETVLVSAAAGAVGSVVGQIAKL--KGCKVVGAAGSDEKIAYLKQ----IG-F--DAAFNYKTVNSLEEALKKA  210 (333)
T ss_dssp             TSCCCSSCEEEEESTTBHHHHHHHHHHHH--TTCEEEEEESSHHHHHHHHH----TT-C--SEEEETTSCSCHHHHHHHH
T ss_pred             hhCCCCCCEEEEecCCCcHHHHHHHHHHH--CCCEEEEEeCCHHHHHHHHh----cC-C--cEEEecCCHHHHHHHHHHH
Confidence            346788999999997 8899998888884  78999999999988877743    46 2  22222122   1111111 


Q ss_pred             -CCCcceeehhhhccCChhHHHHHHHHHHhhccCCcEEEEee
Q 042119          200 -LGEYDCIFLAALVGMSKEEKLTILGHIRKYMKDGGILLVRS  240 (286)
Q Consensus       200 -l~~fD~V~~aalvg~~~~~k~~vl~~l~~~l~pgg~lv~r~  240 (286)
                       -+++|+|+.++-      .  ..++...+.|+|||++++-.
T Consensus       211 ~~~~~d~vi~~~g------~--~~~~~~~~~l~~~G~~v~~g  244 (333)
T 1v3u_A          211 SPDGYDCYFDNVG------G--EFLNTVLSQMKDFGKIAICG  244 (333)
T ss_dssp             CTTCEEEEEESSC------H--HHHHHHHTTEEEEEEEEECC
T ss_pred             hCCCCeEEEECCC------h--HHHHHHHHHHhcCCEEEEEe
Confidence             136999986643      1  24778889999999998764

>3krt_A Crotonyl COA reductase; structural genomics, protein structure initiative, NYSGXRC, PSI-2; 2.19A {Streptomyces coelicolor} PDB: 3hzz_A

Probab=97.33  E-value=0.00013  Score=69.99  Aligned_cols=100  Identities=15%  Similarity=0.167  Sum_probs=70.4

Q ss_pred             cCCCCCCEEEEecc-CCChhhHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEccc-----------
Q 042119          126 NGVVQPKKVAFVGS-GPMPLTSIIMAKHHLTSTHFDNFDIDEAANDVARSIVASDAEFEGRMKFLTRDI-----------  193 (286)
Q Consensus       126 ~~~~~~~~VL~IG~-G~lp~tai~lA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~g~l~~~i~f~~~D~-----------  193 (286)
                      ..++++++||.+|+ |++|+.++.+|+.  .|++|++++.+++..+.+++    +|. ..-+.+...|.           
T Consensus       224 ~~~~~g~~VlV~GasG~vG~~avqlak~--~Ga~vi~~~~~~~~~~~~~~----lGa-~~vi~~~~~d~~~~~~~~~~~~  296 (456)
T 3krt_A          224 AGMKQGDNVLIWGASGGLGSYATQFALA--GGANPICVVSSPQKAEICRA----MGA-EAIIDRNAEGYRFWKDENTQDP  296 (456)
T ss_dssp             TCCCTTCEEEETTTTSHHHHHHHHHHHH--TTCEEEEEESSHHHHHHHHH----HTC-CEEEETTTTTCCSEEETTEECH
T ss_pred             cCCCCCCEEEEECCCCHHHHHHHHHHHH--cCCeEEEEECCHHHHHHHHh----hCC-cEEEecCcCcccccccccccch
Confidence            45689999999998 9999999999994  79999999999999888866    462 11111111111           


Q ss_pred             -------cchhh--cCCCcceeehhhhccCChhHHHHHHHHHHhhccCCcEEEEee
Q 042119          194 -------MEVKE--QLGEYDCIFLAALVGMSKEEKLTILGHIRKYMKDGGILLVRS  240 (286)
Q Consensus       194 -------~~~~~--~l~~fD~V~~aalvg~~~~~k~~vl~~l~~~l~pgg~lv~r~  240 (286)
                             ..+..  .-.++|+||.+.  |    .  ..++...+.|+|||+++.-.
T Consensus       297 ~~~~~~~~~i~~~t~g~g~Dvvid~~--G----~--~~~~~~~~~l~~~G~iv~~G  344 (456)
T 3krt_A          297 KEWKRFGKRIRELTGGEDIDIVFEHP--G----R--ETFGASVFVTRKGGTITTCA  344 (456)
T ss_dssp             HHHHHHHHHHHHHHTSCCEEEEEECS--C----H--HHHHHHHHHEEEEEEEEESC
T ss_pred             HHHHHHHHHHHHHhCCCCCcEEEEcC--C----c--hhHHHHHHHhhCCcEEEEEe
Confidence                   11111  113799999654  2    2  46778889999999998854

>1gu7_A Enoyl-[acyl-carrier-protein] reductase [NADPH, B-specific] 1,mitochondrial; oxidoreductase, thioester reduction, fatty acids; 1.70A {Candida tropicalis} SCOP: b.35.1.2 c.2.1.1 PDB: 1guf_A* 1n9g_B* 1n9g_A* 1gyr_A 1h0k_A

Probab=97.32  E-value=0.00016  Score=66.92  Aligned_cols=108  Identities=10%  Similarity=0.017  Sum_probs=68.2

Q ss_pred             HHHhc-CCCCC-CEEEEecc-CCChhhHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEE---ccccc
Q 042119          122 ILSEN-GVVQP-KKVAFVGS-GPMPLTSIIMAKHHLTSTHFDNFDIDEAANDVARSIVASDAEFEGRMKFLT---RDIME  195 (286)
Q Consensus       122 ~l~~~-~~~~~-~~VL~IG~-G~lp~tai~lA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~g~l~~~i~f~~---~D~~~  195 (286)
                      ++.+. .++++ ++||.+|+ |++|+.++.+|+.  .|++|+++..+++..+..++.++++|. ..-+....   .|..+
T Consensus       157 ~l~~~~~~~~g~~~VlV~Ga~G~vG~~aiqlak~--~Ga~vi~~~~~~~~~~~~~~~~~~lGa-~~vi~~~~~~~~~~~~  233 (364)
T 1gu7_A          157 MLTHYVKLTPGKDWFIQNGGTSAVGKYASQIGKL--LNFNSISVIRDRPNLDEVVASLKELGA-TQVITEDQNNSREFGP  233 (364)
T ss_dssp             HHHSSSCCCTTTCEEEESCTTSHHHHHHHHHHHH--HTCEEEEEECCCTTHHHHHHHHHHHTC-SEEEEHHHHHCGGGHH
T ss_pred             HHHHhhccCCCCcEEEECCCCcHHHHHHHHHHHH--CCCEEEEEecCccccHHHHHHHHhcCC-eEEEecCccchHHHHH
Confidence            44443 56788 99999997 9999999999994  689999998776653333344456772 21122111   12211


Q ss_pred             hhh-----cCCCcceeehhhhccCChhHHHHHHHHHHhhccCCcEEEEee
Q 042119          196 VKE-----QLGEYDCIFLAALVGMSKEEKLTILGHIRKYMKDGGILLVRS  240 (286)
Q Consensus       196 ~~~-----~l~~fD~V~~aalvg~~~~~k~~vl~~l~~~l~pgg~lv~r~  240 (286)
                      ...     .-.++|+||.+.-     ..  ... ...+.|++||+++.-.
T Consensus       234 ~i~~~t~~~~~g~Dvvid~~G-----~~--~~~-~~~~~l~~~G~~v~~g  275 (364)
T 1gu7_A          234 TIKEWIKQSGGEAKLALNCVG-----GK--SST-GIARKLNNNGLMLTYG  275 (364)
T ss_dssp             HHHHHHHHHTCCEEEEEESSC-----HH--HHH-HHHHTSCTTCEEEECC
T ss_pred             HHHHHhhccCCCceEEEECCC-----ch--hHH-HHHHHhccCCEEEEec
Confidence            111     1237999996642     11  123 5678999999998754

>4a0s_A Octenoyl-COA reductase/carboxylase; oxidoreductase, transferase, cinnabaramide PKS biosynthesis; HET: CO8 NAP; 1.90A {Streptomyces SP} PDB: 4a10_A

Probab=97.32  E-value=0.0003  Score=67.07  Aligned_cols=100  Identities=16%  Similarity=0.065  Sum_probs=70.1

Q ss_pred             cCCCCCCEEEEecc-CCChhhHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEccc-----------
Q 042119          126 NGVVQPKKVAFVGS-GPMPLTSIIMAKHHLTSTHFDNFDIDEAANDVARSIVASDAEFEGRMKFLTRDI-----------  193 (286)
Q Consensus       126 ~~~~~~~~VL~IG~-G~lp~tai~lA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~g~l~~~i~f~~~D~-----------  193 (286)
                      ..+.++++||..|+ |++|+.++.+|+.  .|++|++++.+++..+.+++    +|. ..-+.....|.           
T Consensus       216 ~~~~~g~~VlV~GasG~iG~~a~qla~~--~Ga~vi~~~~~~~~~~~~~~----lGa-~~~i~~~~~~~~~~~~~~~~~~  288 (447)
T 4a0s_A          216 AQMKQGDIVLIWGASGGLGSYAIQFVKN--GGGIPVAVVSSAQKEAAVRA----LGC-DLVINRAELGITDDIADDPRRV  288 (447)
T ss_dssp             TCCCTTCEEEETTTTSHHHHHHHHHHHH--TTCEEEEEESSHHHHHHHHH----TTC-CCEEEHHHHTCCTTGGGCHHHH
T ss_pred             cCCCCCCEEEEECCCCHHHHHHHHHHHH--cCCEEEEEeCCHHHHHHHHh----cCC-CEEEeccccccccccccccccc
Confidence            56789999999997 9999999999994  79999999999998888754    562 22111111111           


Q ss_pred             --------cchhhc-CCCcceeehhhhccCChhHHHHHHHHHHhhccCCcEEEEee
Q 042119          194 --------MEVKEQ-LGEYDCIFLAALVGMSKEEKLTILGHIRKYMKDGGILLVRS  240 (286)
Q Consensus       194 --------~~~~~~-l~~fD~V~~aalvg~~~~~k~~vl~~l~~~l~pgg~lv~r~  240 (286)
                              ..+... -.++|+||.++-      .  ..++...+.|++||+++.-.
T Consensus       289 ~~~~~~~~~~v~~~~g~g~Dvvid~~G------~--~~~~~~~~~l~~~G~iv~~G  336 (447)
T 4a0s_A          289 VETGRKLAKLVVEKAGREPDIVFEHTG------R--VTFGLSVIVARRGGTVVTCG  336 (447)
T ss_dssp             HHHHHHHHHHHHHHHSSCCSEEEECSC------H--HHHHHHHHHSCTTCEEEESC
T ss_pred             chhhhHHHHHHHHHhCCCceEEEECCC------c--hHHHHHHHHHhcCCEEEEEe
Confidence                    011111 136999996542      1  25678888999999998864

>3evf_A RNA-directed RNA polymerase NS5; NS5 methyltransferase, RNA CAP binding, binding, capsid protein; HET: GTA SAH; 1.45A {Yellow fever virus} SCOP: c.66.1.0 PDB: 3evb_A* 3evc_A* 3evd_A* 3eve_A* 3eva_A*

Probab=97.32  E-value=0.00057  Score=62.01  Aligned_cols=112  Identities=13%  Similarity=0.092  Sum_probs=64.3

Q ss_pred             hcCCCCCCEEEEeccCCChhhHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEccccchhhcCCCcc
Q 042119          125 ENGVVQPKKVAFVGSGPMPLTSIIMAKHHLTSTHFDNFDIDEAANDVARSIVASDAEFEGRMKFLTRDIMEVKEQLGEYD  204 (286)
Q Consensus       125 ~~~~~~~~~VL~IG~G~lp~tai~lA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~g~l~~~i~f~~~D~~~~~~~l~~fD  204 (286)
                      +....++.+|||+||||+|.|-....+  .+-..|+++|+.-+.....+.. ...|   .++.+..+++......-..||
T Consensus        69 k~~l~~~~~VLDLGaAPGGWSQvAa~~--~~~~~v~g~dVGvDl~~~pi~~-~~~g---~~ii~~~~~~dv~~l~~~~~D  142 (277)
T 3evf_A           69 RGYVKLEGRVIDLGCGRGGWCYYAAAQ--KEVSGVKGFTLGRDGHEKPMNV-QSLG---WNIITFKDKTDIHRLEPVKCD  142 (277)
T ss_dssp             TTSSCCCEEEEEETCTTCHHHHHHHTS--TTEEEEEEECCCCTTCCCCCCC-CBTT---GGGEEEECSCCTTTSCCCCCS
T ss_pred             hCCCCCCCEEEEecCCCCHHHHHHHHh--cCCCcceeEEEeccCccccccc-CcCC---CCeEEEeccceehhcCCCCcc
Confidence            345678889999999999988554433  2345788888874321000000 0012   134445555422222224799


Q ss_pred             eeehhhh--ccCChhHH---HHHHHHHHhhccCC-cEEEEeecC
Q 042119          205 CIFLAAL--VGMSKEEK---LTILGHIRKYMKDG-GILLVRSAK  242 (286)
Q Consensus       205 ~V~~aal--vg~~~~~k---~~vl~~l~~~l~pg-g~lv~r~~~  242 (286)
                      +|+.+..  .|...-+-   ..+++.+.+.|+|| |.+++.-..
T Consensus       143 lVlsD~apnsG~~~~D~~rs~~LL~~a~~~LkpG~G~FV~KVf~  186 (277)
T 3evf_A          143 TLLCDIGESSSSSVTEGERTVRVLDTVEKWLACGVDNFCVKVLA  186 (277)
T ss_dssp             EEEECCCCCCSCHHHHHHHHHHHHHHHHHHHTTCCSEEEEEESC
T ss_pred             EEEecCccCcCchHHHHHHHHHHHHHHHHHhCCCCCeEEEEecC
Confidence            9986532  12211111   23567788999999 999997544

>1xa0_A Putative NADPH dependent oxidoreductases; structural genomics, protein structure initiative, MCSG; HET: DTY; 2.80A {Geobacillus stearothermophilus} SCOP: b.35.1.2 c.2.1.1

Probab=97.31  E-value=0.00014  Score=66.30  Aligned_cols=100  Identities=17%  Similarity=0.170  Sum_probs=66.8

Q ss_pred             hcCCCCCC-EEEEecc-CCChhhHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEccccchhhcC--
Q 042119          125 ENGVVQPK-KVAFVGS-GPMPLTSIIMAKHHLTSTHFDNFDIDEAANDVARSIVASDAEFEGRMKFLTRDIMEVKEQL--  200 (286)
Q Consensus       125 ~~~~~~~~-~VL~IG~-G~lp~tai~lA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~g~l~~~i~f~~~D~~~~~~~l--  200 (286)
                      +..+.+++ +||.+|+ |++|..++.+|+.  .|++|+++|.+++..+.+++    +|. ..-+.....| .+....+  
T Consensus       143 ~~~~~~g~~~VlV~Ga~G~vG~~~~q~a~~--~Ga~vi~~~~~~~~~~~~~~----lGa-~~~i~~~~~~-~~~~~~~~~  214 (328)
T 1xa0_A          143 EHGLTPERGPVLVTGATGGVGSLAVSMLAK--RGYTVEASTGKAAEHDYLRV----LGA-KEVLAREDVM-AERIRPLDK  214 (328)
T ss_dssp             HTTCCGGGCCEEESSTTSHHHHHHHHHHHH--TTCCEEEEESCTTCHHHHHH----TTC-SEEEECC----------CCS
T ss_pred             hcCCCCCCceEEEecCCCHHHHHHHHHHHH--CCCEEEEEECCHHHHHHHHH----cCC-cEEEecCCcH-HHHHHHhcC
Confidence            34566665 8999997 9999999999994  68999999999988887765    562 2111111111 1111111  


Q ss_pred             CCcceeehhhhccCChhHHHHHHHHHHhhccCCcEEEEee
Q 042119          201 GEYDCIFLAALVGMSKEEKLTILGHIRKYMKDGGILLVRS  240 (286)
Q Consensus       201 ~~fD~V~~aalvg~~~~~k~~vl~~l~~~l~pgg~lv~r~  240 (286)
                      .++|+||.+.  |.      ..++...+.+++||+++.-.
T Consensus       215 ~~~d~vid~~--g~------~~~~~~~~~l~~~G~~v~~G  246 (328)
T 1xa0_A          215 QRWAAAVDPV--GG------RTLATVLSRMRYGGAVAVSG  246 (328)
T ss_dssp             CCEEEEEECS--TT------TTHHHHHHTEEEEEEEEECS
T ss_pred             CcccEEEECC--cH------HHHHHHHHhhccCCEEEEEe
Confidence            3699998654  21      14667888999999998764

>2g1u_A Hypothetical protein TM1088A; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: AMP; 1.50A {Thermotoga maritima} PDB: 3l4b_A*

Probab=97.31  E-value=0.00042  Score=56.44  Aligned_cols=98  Identities=15%  Similarity=0.114  Sum_probs=63.9

Q ss_pred             CCCCEEEEeccCCChhhHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEccccchh--h--cCCCcc
Q 042119          129 VQPKKVAFVGSGPMPLTSIIMAKHHLTSTHFDNFDIDEAANDVARSIVASDAEFEGRMKFLTRDIMEVK--E--QLGEYD  204 (286)
Q Consensus       129 ~~~~~VL~IG~G~lp~tai~lA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~g~l~~~i~f~~~D~~~~~--~--~l~~fD  204 (286)
                      .++++|+.+|+|++|.......+.  .|.+|+.+|.+++.++.+++   ..|     ..++.+|..+..  .  ...++|
T Consensus        17 ~~~~~v~IiG~G~iG~~la~~L~~--~g~~V~vid~~~~~~~~~~~---~~g-----~~~~~~d~~~~~~l~~~~~~~ad   86 (155)
T 2g1u_A           17 QKSKYIVIFGCGRLGSLIANLASS--SGHSVVVVDKNEYAFHRLNS---EFS-----GFTVVGDAAEFETLKECGMEKAD   86 (155)
T ss_dssp             CCCCEEEEECCSHHHHHHHHHHHH--TTCEEEEEESCGGGGGGSCT---TCC-----SEEEESCTTSHHHHHTTTGGGCS
T ss_pred             cCCCcEEEECCCHHHHHHHHHHHh--CCCeEEEEECCHHHHHHHHh---cCC-----CcEEEecCCCHHHHHHcCcccCC
Confidence            567899999999988776655552  68899999999987544321   223     456677764321  1  134699


Q ss_pred             eeehhhhccCChhHHHHHHHHHHhhccCCcEEEEee
Q 042119          205 CIFLAALVGMSKEEKLTILGHIRKYMKDGGILLVRS  240 (286)
Q Consensus       205 ~V~~aalvg~~~~~k~~vl~~l~~~l~pgg~lv~r~  240 (286)
                      +|+.+.--    ......+..+.+.+.|...++.+.
T Consensus        87 ~Vi~~~~~----~~~~~~~~~~~~~~~~~~~iv~~~  118 (155)
T 2g1u_A           87 MVFAFTND----DSTNFFISMNARYMFNVENVIARV  118 (155)
T ss_dssp             EEEECSSC----HHHHHHHHHHHHHTSCCSEEEEEC
T ss_pred             EEEEEeCC----cHHHHHHHHHHHHHCCCCeEEEEE
Confidence            99876421    233344555666667777777775

>2j8z_A Quinone oxidoreductase; medium-chain dehydrogenase- reductases, QUIN oxidoreductase, oxidative stress response; HET: NAP; 2.50A {Homo sapiens} PDB: 2oby_A*

Probab=97.28  E-value=0.00019  Score=66.42  Aligned_cols=99  Identities=8%  Similarity=-0.065  Sum_probs=68.9

Q ss_pred             hcCCCCCCEEEEec-cCCChhhHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEcc--ccc-hhhcC
Q 042119          125 ENGVVQPKKVAFVG-SGPMPLTSIIMAKHHLTSTHFDNFDIDEAANDVARSIVASDAEFEGRMKFLTRD--IME-VKEQL  200 (286)
Q Consensus       125 ~~~~~~~~~VL~IG-~G~lp~tai~lA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~g~l~~~i~f~~~D--~~~-~~~~l  200 (286)
                      ...+.++++||..| +|++|..++.+|+.  .|++|+++|.+++..+.+++    +|.   ...+-..+  ..+ +....
T Consensus       157 ~~~~~~g~~vlV~Ga~ggiG~~~~~~a~~--~Ga~Vi~~~~~~~~~~~~~~----~g~---~~~~~~~~~~~~~~~~~~~  227 (354)
T 2j8z_A          157 VGNVQAGDYVLIHAGLSGVGTAAIQLTRM--AGAIPLVTAGSQKKLQMAEK----LGA---AAGFNYKKEDFSEATLKFT  227 (354)
T ss_dssp             TSCCCTTCEEEESSTTSHHHHHHHHHHHH--TTCEEEEEESCHHHHHHHHH----HTC---SEEEETTTSCHHHHHHHHT
T ss_pred             hcCCCCCCEEEEECCccHHHHHHHHHHHH--cCCEEEEEeCCHHHHHHHHH----cCC---cEEEecCChHHHHHHHHHh
Confidence            44568899999999 79899999999984  78999999999998888754    452   22221111  111 11111


Q ss_pred             --CCcceeehhhhccCChhHHHHHHHHHHhhccCCcEEEEee
Q 042119          201 --GEYDCIFLAALVGMSKEEKLTILGHIRKYMKDGGILLVRS  240 (286)
Q Consensus       201 --~~fD~V~~aalvg~~~~~k~~vl~~l~~~l~pgg~lv~r~  240 (286)
                        .++|+||.++..        ..++...+.|++||++++-.
T Consensus       228 ~~~~~d~vi~~~G~--------~~~~~~~~~l~~~G~iv~~G  261 (354)
T 2j8z_A          228 KGAGVNLILDCIGG--------SYWEKNVNCLALDGRWVLYG  261 (354)
T ss_dssp             TTSCEEEEEESSCG--------GGHHHHHHHEEEEEEEEECC
T ss_pred             cCCCceEEEECCCc--------hHHHHHHHhccCCCEEEEEe
Confidence              369999966532        14667788999999998864

>2dq4_A L-threonine 3-dehydrogenase; NAD-dependent, oxidoreductase, structural genomics, NPPSFA; HET: MES; 2.50A {Thermus thermophilus} PDB: 2ejv_A*

Probab=97.27  E-value=5.8e-05  Score=69.54  Aligned_cols=103  Identities=18%  Similarity=0.191  Sum_probs=70.9

Q ss_pred             HHH-hcCCCCCCEEEEeccCCChhhHHHHHhhcCCCc-EEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEccccchhhc
Q 042119          122 ILS-ENGVVQPKKVAFVGSGPMPLTSIIMAKHHLTST-HFDNFDIDEAANDVARSIVASDAEFEGRMKFLTRDIMEVKEQ  199 (286)
Q Consensus       122 ~l~-~~~~~~~~~VL~IG~G~lp~tai~lA~~~~~g~-~V~~iDid~~ai~~Ar~~~~~~g~l~~~i~f~~~D~~~~~~~  199 (286)
                      ++. +..+ ++++||.+|+|++|+.++.+|+.  .|+ +|+++|.+++..+.++++ . ..    -+.....|..+....
T Consensus       156 ~l~~~~~~-~g~~VlV~GaG~vG~~~~q~a~~--~Ga~~Vi~~~~~~~~~~~~~~l-a-~~----v~~~~~~~~~~~~~~  226 (343)
T 2dq4_A          156 TVYAGSGV-SGKSVLITGAGPIGLMAAMVVRA--SGAGPILVSDPNPYRLAFARPY-A-DR----LVNPLEEDLLEVVRR  226 (343)
T ss_dssp             HHHSTTCC-TTSCEEEECCSHHHHHHHHHHHH--TTCCSEEEECSCHHHHGGGTTT-C-SE----EECTTTSCHHHHHHH
T ss_pred             HHHHhCCC-CCCEEEEECCCHHHHHHHHHHHH--cCCCEEEEECCCHHHHHHHHHh-H-Hh----ccCcCccCHHHHHHH
Confidence            344 5567 89999999999999999999994  688 999999999998888764 2 11    011101121111111


Q ss_pred             --CCCcceeehhhhccCChhHHHHHHHHHHhhccCCcEEEEee
Q 042119          200 --LGEYDCIFLAALVGMSKEEKLTILGHIRKYMKDGGILLVRS  240 (286)
Q Consensus       200 --l~~fD~V~~aalvg~~~~~k~~vl~~l~~~l~pgg~lv~r~  240 (286)
                        -.++|+||.+.-.       ...++...+.|++||+++.-.
T Consensus       227 ~~~~g~D~vid~~g~-------~~~~~~~~~~l~~~G~iv~~g  262 (343)
T 2dq4_A          227 VTGSGVEVLLEFSGN-------EAAIHQGLMALIPGGEARILG  262 (343)
T ss_dssp             HHSSCEEEEEECSCC-------HHHHHHHHHHEEEEEEEEECC
T ss_pred             hcCCCCCEEEECCCC-------HHHHHHHHHHHhcCCEEEEEe
Confidence              1369999966421       135778889999999998865

>2zig_A TTHA0409, putative modification methylase; methyltransferase, S- adenosylmethionine, structural genomics, NPPSFA; 2.10A {Thermus thermophilus} PDB: 2zie_A* 2zif_A

Probab=97.27  E-value=0.00074  Score=61.27  Aligned_cols=48  Identities=15%  Similarity=0.007  Sum_probs=42.9

Q ss_pred             CCCCEEEEeccCCChhhHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcC
Q 042119          129 VQPKKVAFVGSGPMPLTSIIMAKHHLTSTHFDNFDIDEAANDVARSIVASDA  180 (286)
Q Consensus       129 ~~~~~VL~IG~G~lp~tai~lA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~g  180 (286)
                      .++..|||++||. |.|++..++   .|.+++|+|+++++++.|++.++...
T Consensus       234 ~~~~~vlD~f~Gs-Gt~~~~a~~---~g~~~~g~e~~~~~~~~a~~r~~~~~  281 (297)
T 2zig_A          234 FVGDVVLDPFAGT-GTTLIAAAR---WGRRALGVELVPRYAQLAKERFAREV  281 (297)
T ss_dssp             CTTCEEEETTCTT-THHHHHHHH---TTCEEEEEESCHHHHHHHHHHHHHHS
T ss_pred             CCCCEEEECCCCC-CHHHHHHHH---cCCeEEEEeCCHHHHHHHHHHHHHhc
Confidence            5789999999995 888888777   78999999999999999999998764

>1wly_A CAAR, 2-haloacrylate reductase; NADPH-dependent oxidoreductase, oxidoreductase; 1.30A {Burkholderia SP}

Probab=97.27  E-value=0.00022  Score=65.29  Aligned_cols=99  Identities=17%  Similarity=0.132  Sum_probs=69.2

Q ss_pred             hcCCCCCCEEEEec-cCCChhhHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEc--cccc-hhh--
Q 042119          125 ENGVVQPKKVAFVG-SGPMPLTSIIMAKHHLTSTHFDNFDIDEAANDVARSIVASDAEFEGRMKFLTR--DIME-VKE--  198 (286)
Q Consensus       125 ~~~~~~~~~VL~IG-~G~lp~tai~lA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~g~l~~~i~f~~~--D~~~-~~~--  198 (286)
                      ...+.++++||..| +|++|..++.+++.  .|++|+++|.+++..+.+++    +|.   ...+...  |..+ +..  
T Consensus       140 ~~~~~~g~~vlV~Ga~ggiG~~~~~~a~~--~G~~Vi~~~~~~~~~~~~~~----~g~---~~~~d~~~~~~~~~i~~~~  210 (333)
T 1wly_A          140 THKVKPGDYVLIHAAAGGMGHIMVPWARH--LGATVIGTVSTEEKAETARK----LGC---HHTINYSTQDFAEVVREIT  210 (333)
T ss_dssp             TSCCCTTCEEEETTTTSTTHHHHHHHHHH--TTCEEEEEESSHHHHHHHHH----HTC---SEEEETTTSCHHHHHHHHH
T ss_pred             hhCCCCCCEEEEECCccHHHHHHHHHHHH--CCCEEEEEeCCHHHHHHHHH----cCC---CEEEECCCHHHHHHHHHHh
Confidence            34568899999999 49999999999984  68999999999988888765    452   2222111  1111 111  


Q ss_pred             cCCCcceeehhhhccCChhHHHHHHHHHHhhccCCcEEEEee
Q 042119          199 QLGEYDCIFLAALVGMSKEEKLTILGHIRKYMKDGGILLVRS  240 (286)
Q Consensus       199 ~l~~fD~V~~aalvg~~~~~k~~vl~~l~~~l~pgg~lv~r~  240 (286)
                      .-.++|+||.++  |.      ..++...+.|++||+++.-.
T Consensus       211 ~~~~~d~vi~~~--g~------~~~~~~~~~l~~~G~iv~~g  244 (333)
T 1wly_A          211 GGKGVDVVYDSI--GK------DTLQKSLDCLRPRGMCAAYG  244 (333)
T ss_dssp             TTCCEEEEEECS--CT------TTHHHHHHTEEEEEEEEECC
T ss_pred             CCCCCeEEEECC--cH------HHHHHHHHhhccCCEEEEEe
Confidence            113699999654  31      35678889999999998765

>3ado_A Lambda-crystallin; L-gulonate 3-dehydrogenase, structural genomics, riken struc genomics/proteomics initiative, RSGI, acetylation; 1.70A {Oryctolagus cuniculus} PDB: 3adp_A* 3f3s_A*

Probab=97.25  E-value=0.0017  Score=60.13  Aligned_cols=102  Identities=16%  Similarity=0.150  Sum_probs=72.3

Q ss_pred             CCCEEEEeccCCChhhH-HHHHhhcCCCcEEEEEeCChHHHHHHHHHHHh-------cCCCC---------CCeEEEEcc
Q 042119          130 QPKKVAFVGSGPMPLTS-IIMAKHHLTSTHFDNFDIDEAANDVARSIVAS-------DAEFE---------GRMKFLTRD  192 (286)
Q Consensus       130 ~~~~VL~IG~G~lp~ta-i~lA~~~~~g~~V~~iDid~~ai~~Ar~~~~~-------~g~l~---------~~i~f~~~D  192 (286)
                      ...+|..||+|.+|-.- ..+|.   .|..|+.+|+++++++.+++.+++       .|.+.         .++++. .|
T Consensus         5 ~~~~VaViGaG~MG~giA~~~a~---~G~~V~l~D~~~~~l~~~~~~i~~~l~~~~~~g~~~~~~~~~~~l~~i~~~-~~   80 (319)
T 3ado_A            5 AAGDVLIVGSGLVGRSWAMLFAS---GGFRVKLYDIEPRQITGALENIRKEMKSLQQSGSLKGSLSAEEQLSLISSC-TN   80 (319)
T ss_dssp             --CEEEEECCSHHHHHHHHHHHH---TTCCEEEECSCHHHHHHHHHHHHHHHHHHHHTTCCCSSSCHHHHHHTEEEE-CC
T ss_pred             CCCeEEEECCcHHHHHHHHHHHh---CCCeEEEEECCHHHHHHHHHHHHHHHHHHHHcCCCCCccCHHHHHhhcccc-cc
Confidence            34799999999988653 33343   799999999999999988776643       12111         134432 22


Q ss_pred             ccchhhcCCCcceeehhhhccCChhHHHHHHHHHHhhccCCcEEEEee
Q 042119          193 IMEVKEQLGEYDCIFLAALVGMSKEEKLTILGHIRKYMKDGGILLVRS  240 (286)
Q Consensus       193 ~~~~~~~l~~fD~V~~aalvg~~~~~k~~vl~~l~~~l~pgg~lv~r~  240 (286)
                         +...+.+.|+|+.+.  ..+.+-|.+++.++-++++|+.+|...+
T Consensus        81 ---l~~a~~~ad~ViEav--~E~l~iK~~lf~~l~~~~~~~aIlaSNT  123 (319)
T 3ado_A           81 ---LAEAVEGVVHIQECV--PENLDLKRKIFAQLDSIVDDRVVLSSSS  123 (319)
T ss_dssp             ---HHHHTTTEEEEEECC--CSCHHHHHHHHHHHHTTCCSSSEEEECC
T ss_pred             ---hHhHhccCcEEeecc--ccHHHHHHHHHHHHHHHhhhcceeehhh
Confidence               233466789998663  3456889999999999999999887764

>1yb5_A Quinone oxidoreductase; medium-chain dehydrogenase/reductase, quinon reduction, structural genomics, structural genomics consort; HET: NAP; 1.85A {Homo sapiens} SCOP: b.35.1.2 c.2.1.1

Probab=97.23  E-value=0.00026  Score=65.58  Aligned_cols=99  Identities=16%  Similarity=0.180  Sum_probs=68.8

Q ss_pred             hcCCCCCCEEEEecc-CCChhhHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEcc--ccc-hhh--
Q 042119          125 ENGVVQPKKVAFVGS-GPMPLTSIIMAKHHLTSTHFDNFDIDEAANDVARSIVASDAEFEGRMKFLTRD--IME-VKE--  198 (286)
Q Consensus       125 ~~~~~~~~~VL~IG~-G~lp~tai~lA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~g~l~~~i~f~~~D--~~~-~~~--  198 (286)
                      ...++++++||..|+ |++|..++.+|+.  .|++|+++|.+++..+.+++    +|.   ...+-..+  ..+ +..  
T Consensus       165 ~~~~~~g~~vlV~GasggiG~~~~~~a~~--~Ga~Vi~~~~~~~~~~~~~~----~ga---~~~~d~~~~~~~~~~~~~~  235 (351)
T 1yb5_A          165 SACVKAGESVLVHGASGGVGLAACQIARA--YGLKILGTAGTEEGQKIVLQ----NGA---HEVFNHREVNYIDKIKKYV  235 (351)
T ss_dssp             TSCCCTTCEEEEETCSSHHHHHHHHHHHH--TTCEEEEEESSHHHHHHHHH----TTC---SEEEETTSTTHHHHHHHHH
T ss_pred             hhCCCCcCEEEEECCCChHHHHHHHHHHH--CCCEEEEEeCChhHHHHHHH----cCC---CEEEeCCCchHHHHHHHHc
Confidence            345688999999997 8899999999984  78999999999998886654    562   22121111  111 111  


Q ss_pred             cCCCcceeehhhhccCChhHHHHHHHHHHhhccCCcEEEEee
Q 042119          199 QLGEYDCIFLAALVGMSKEEKLTILGHIRKYMKDGGILLVRS  240 (286)
Q Consensus       199 ~l~~fD~V~~aalvg~~~~~k~~vl~~l~~~l~pgg~lv~r~  240 (286)
                      .-.++|+||.++.      .  ..++...+.++|||+++.-.
T Consensus       236 ~~~~~D~vi~~~G------~--~~~~~~~~~l~~~G~iv~~g  269 (351)
T 1yb5_A          236 GEKGIDIIIEMLA------N--VNLSKDLSLLSHGGRVIVVG  269 (351)
T ss_dssp             CTTCEEEEEESCH------H--HHHHHHHHHEEEEEEEEECC
T ss_pred             CCCCcEEEEECCC------h--HHHHHHHHhccCCCEEEEEe
Confidence            1126999986643      1  24677889999999998764

>1qor_A Quinone oxidoreductase; HET: NAP; 2.20A {Escherichia coli} SCOP: b.35.1.2 c.2.1.1

Probab=97.19  E-value=0.00021  Score=65.13  Aligned_cols=99  Identities=11%  Similarity=0.070  Sum_probs=69.3

Q ss_pred             hcCCCCCCEEEEec-cCCChhhHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEcc--ccc-hhhc-
Q 042119          125 ENGVVQPKKVAFVG-SGPMPLTSIIMAKHHLTSTHFDNFDIDEAANDVARSIVASDAEFEGRMKFLTRD--IME-VKEQ-  199 (286)
Q Consensus       125 ~~~~~~~~~VL~IG-~G~lp~tai~lA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~g~l~~~i~f~~~D--~~~-~~~~-  199 (286)
                      ...+.++++||..| +|++|..++.+++.  .|++|+++|.+++..+.+++    +|.   ...+-..|  ..+ +... 
T Consensus       135 ~~~~~~g~~vlV~Ga~ggiG~~~~~~a~~--~G~~V~~~~~~~~~~~~~~~----~g~---~~~~~~~~~~~~~~~~~~~  205 (327)
T 1qor_A          135 TYEIKPDEQFLFHAAAGGVGLIACQWAKA--LGAKLIGTVGTAQKAQSALK----AGA---WQVINYREEDLVERLKEIT  205 (327)
T ss_dssp             TSCCCTTCEEEESSTTBHHHHHHHHHHHH--HTCEEEEEESSHHHHHHHHH----HTC---SEEEETTTSCHHHHHHHHT
T ss_pred             hhCCCCCCEEEEECCCCHHHHHHHHHHHH--cCCEEEEEeCCHHHHHHHHH----cCC---CEEEECCCccHHHHHHHHh
Confidence            34568899999999 78899999999984  68999999999998888766    452   22221111  111 1111 


Q ss_pred             -CCCcceeehhhhccCChhHHHHHHHHHHhhccCCcEEEEee
Q 042119          200 -LGEYDCIFLAALVGMSKEEKLTILGHIRKYMKDGGILLVRS  240 (286)
Q Consensus       200 -l~~fD~V~~aalvg~~~~~k~~vl~~l~~~l~pgg~lv~r~  240 (286)
                       -.++|+|+.++-        ...++...+.|++||+++.-.
T Consensus       206 ~~~~~D~vi~~~g--------~~~~~~~~~~l~~~G~iv~~g  239 (327)
T 1qor_A          206 GGKKVRVVYDSVG--------RDTWERSLDCLQRRGLMVSFG  239 (327)
T ss_dssp             TTCCEEEEEECSC--------GGGHHHHHHTEEEEEEEEECC
T ss_pred             CCCCceEEEECCc--------hHHHHHHHHHhcCCCEEEEEe
Confidence             126999986642        135678889999999998765

>1lss_A TRK system potassium uptake protein TRKA homolog; KTN domain, NAD, RCK domain, potassium transport, potassium channel, KTRA; HET: NAD; 2.30A {Methanocaldococcus jannaschii} SCOP: c.2.1.9

Probab=97.18  E-value=0.0041  Score=48.56  Aligned_cols=95  Identities=15%  Similarity=0.066  Sum_probs=60.0

Q ss_pred             CCEEEEeccCCChhhHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEccccchh----hcCCCccee
Q 042119          131 PKKVAFVGSGPMPLTSIIMAKHHLTSTHFDNFDIDEAANDVARSIVASDAEFEGRMKFLTRDIMEVK----EQLGEYDCI  206 (286)
Q Consensus       131 ~~~VL~IG~G~lp~tai~lA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~g~l~~~i~f~~~D~~~~~----~~l~~fD~V  206 (286)
                      +++|+.+|+|.+|........  ..|.+|+.+|.+++..+..++   ..|     +.++.+|..+..    ....++|+|
T Consensus         4 ~m~i~IiG~G~iG~~~a~~L~--~~g~~v~~~d~~~~~~~~~~~---~~~-----~~~~~~d~~~~~~l~~~~~~~~d~v   73 (140)
T 1lss_A            4 GMYIIIAGIGRVGYTLAKSLS--EKGHDIVLIDIDKDICKKASA---EID-----ALVINGDCTKIKTLEDAGIEDADMY   73 (140)
T ss_dssp             -CEEEEECCSHHHHHHHHHHH--HTTCEEEEEESCHHHHHHHHH---HCS-----SEEEESCTTSHHHHHHTTTTTCSEE
T ss_pred             CCEEEEECCCHHHHHHHHHHH--hCCCeEEEEECCHHHHHHHHH---hcC-----cEEEEcCCCCHHHHHHcCcccCCEE
Confidence            479999999988766443333  268899999999987654432   234     456778765421    124579999


Q ss_pred             ehhhhccCChhHHHHHHHHHHhhccCCcEEEEee
Q 042119          207 FLAALVGMSKEEKLTILGHIRKYMKDGGILLVRS  240 (286)
Q Consensus       207 ~~aalvg~~~~~k~~vl~~l~~~l~pgg~lv~r~  240 (286)
                      +.+.-.    ......+..+.+.++++ .++++.
T Consensus        74 i~~~~~----~~~~~~~~~~~~~~~~~-~ii~~~  102 (140)
T 1lss_A           74 IAVTGK----EEVNLMSSLLAKSYGIN-KTIARI  102 (140)
T ss_dssp             EECCSC----HHHHHHHHHHHHHTTCC-CEEEEC
T ss_pred             EEeeCC----chHHHHHHHHHHHcCCC-EEEEEe
Confidence            876321    22334555667778886 455543

>1zcj_A Peroxisomal bifunctional enzyme; peroxisomal multifunctional enzyme type 1, L-bifunction enzyme, MFE-1, fatty acid beta oxidation; 1.90A {Rattus norvegicus}

Probab=97.18  E-value=0.0024  Score=61.72  Aligned_cols=98  Identities=18%  Similarity=0.264  Sum_probs=68.2

Q ss_pred             CCEEEEeccCCChhhHH-HHHhhcCCCcEEEEEeCChHHHHHHHHHHHh-------cCCC------CCCeEEEEccccch
Q 042119          131 PKKVAFVGSGPMPLTSI-IMAKHHLTSTHFDNFDIDEAANDVARSIVAS-------DAEF------EGRMKFLTRDIMEV  196 (286)
Q Consensus       131 ~~~VL~IG~G~lp~tai-~lA~~~~~g~~V~~iDid~~ai~~Ar~~~~~-------~g~l------~~~i~f~~~D~~~~  196 (286)
                      -++|.+||+|.+|.... .+++   .|.+|+.+|++++.++.+++.+..       .|.+      ....++ +.|.   
T Consensus        37 ~~kV~VIGaG~MG~~iA~~la~---~G~~V~l~D~~~~~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i-~~~~---  109 (463)
T 1zcj_A           37 VSSVGVLGLGTMGRGIAISFAR---VGISVVAVESDPKQLDAAKKIITFTLEKEASRAHQNGQASAKPKLRF-SSST---  109 (463)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHT---TTCEEEEECSSHHHHHHHHHHHHHHHHHHHHHHHHTTCCCCCCCEEE-ESCG---
T ss_pred             CCEEEEECcCHHHHHHHHHHHh---CCCeEEEEECCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhhh-cCCH---
Confidence            46899999999886533 3343   688999999999999988764321       1100      011233 4453   


Q ss_pred             hhcCCCcceeehhhhccCChhHHHHHHHHHHhhccCCcEEEE
Q 042119          197 KEQLGEYDCIFLAALVGMSKEEKLTILGHIRKYMKDGGILLV  238 (286)
Q Consensus       197 ~~~l~~fD~V~~aalvg~~~~~k~~vl~~l~~~l~pgg~lv~  238 (286)
                       ..+.+.|+|+.+..  .+.+-|..++.++.+.++||.+|+.
T Consensus       110 -~~~~~aDlVIeaVp--e~~~~k~~v~~~l~~~~~~~~ii~s  148 (463)
T 1zcj_A          110 -KELSTVDLVVEAVF--EDMNLKKKVFAELSALCKPGAFLCT  148 (463)
T ss_dssp             -GGGTTCSEEEECCC--SCHHHHHHHHHHHHHHSCTTCEEEE
T ss_pred             -HHHCCCCEEEEcCC--CCHHHHHHHHHHHHhhCCCCeEEEe
Confidence             23467999998753  2445688999999999999988876

>3mog_A Probable 3-hydroxybutyryl-COA dehydrogenase; structural genomics, PSI, protein structure initiative, NYSG oxidoreductase; 2.20A {Escherichia coli}

Probab=97.18  E-value=0.0011  Score=64.48  Aligned_cols=99  Identities=21%  Similarity=0.225  Sum_probs=70.1

Q ss_pred             CCEEEEeccCCChhh-HHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHh-------cCCCC--------CCeEEEEcccc
Q 042119          131 PKKVAFVGSGPMPLT-SIIMAKHHLTSTHFDNFDIDEAANDVARSIVAS-------DAEFE--------GRMKFLTRDIM  194 (286)
Q Consensus       131 ~~~VL~IG~G~lp~t-ai~lA~~~~~g~~V~~iDid~~ai~~Ar~~~~~-------~g~l~--------~~i~f~~~D~~  194 (286)
                      -++|.+||+|.+|.+ +..+++   .|.+|+.+|+++++++.+++.+++       .|.+.        .++++. .|. 
T Consensus         5 ~~kVgVIGaG~MG~~IA~~la~---aG~~V~l~D~~~e~l~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~-~~~-   79 (483)
T 3mog_A            5 VQTVAVIGSGTMGAGIAEVAAS---HGHQVLLYDISAEALTRAIDGIHARLNSRVTRGKLTAETCERTLKRLIPV-TDI-   79 (483)
T ss_dssp             CCCEEEECCSHHHHHHHHHHHH---TTCCEEEECSCHHHHHHHHHHHHHHHHTTTTTTSSCHHHHHHHHHTEEEE-CCG-
T ss_pred             CCEEEEECcCHHHHHHHHHHHH---CCCeEEEEECCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhceeEe-CCH-
Confidence            358999999998876 445555   688999999999999998875432       12100        134442 332 


Q ss_pred             chhhcCCCcceeehhhhccCChhHHHHHHHHHHhhccCCcEEEEe
Q 042119          195 EVKEQLGEYDCIFLAALVGMSKEEKLTILGHIRKYMKDGGILLVR  239 (286)
Q Consensus       195 ~~~~~l~~fD~V~~aalvg~~~~~k~~vl~~l~~~l~pgg~lv~r  239 (286)
                         ..+.+.|+|+.+..  -+.+-|..++.++.+.++||.+|+..
T Consensus        80 ---~~~~~aDlVIeAVp--e~~~vk~~v~~~l~~~~~~~~Ilasn  119 (483)
T 3mog_A           80 ---HALAAADLVIEAAS--ERLEVKKALFAQLAEVCPPQTLLTTN  119 (483)
T ss_dssp             ---GGGGGCSEEEECCC--CCHHHHHHHHHHHHHHSCTTCEEEEC
T ss_pred             ---HHhcCCCEEEEcCC--CcHHHHHHHHHHHHHhhccCcEEEec
Confidence               23457899998743  24457889999999999999988653

>3k6j_A Protein F01G10.3, confirmed by transcript evidenc; rossmann fold, oxidoreductase; 2.20A {Caenorhabditis elegans}

Probab=97.18  E-value=0.0031  Score=61.15  Aligned_cols=100  Identities=17%  Similarity=0.184  Sum_probs=67.4

Q ss_pred             CCCEEEEeccCCChhh-HHHHHhhcCCCcEEEEEeCChHHH-HHHHHHHH---hcCCC--------CCCeEEEEccccch
Q 042119          130 QPKKVAFVGSGPMPLT-SIIMAKHHLTSTHFDNFDIDEAAN-DVARSIVA---SDAEF--------EGRMKFLTRDIMEV  196 (286)
Q Consensus       130 ~~~~VL~IG~G~lp~t-ai~lA~~~~~g~~V~~iDid~~ai-~~Ar~~~~---~~g~l--------~~~i~f~~~D~~~~  196 (286)
                      +-++|.+||+|.+|.+ +..+++   .|.+|+.+|++++.. +..++.++   +.|.+        -.++++. .|.   
T Consensus        53 ~i~kVaVIGaG~MG~~IA~~la~---aG~~V~l~D~~~e~a~~~i~~~l~~~~~~G~l~~~~~~~~~~~i~~t-~dl---  125 (460)
T 3k6j_A           53 DVNSVAIIGGGTMGKAMAICFGL---AGIETFLVVRNEQRCKQELEVMYAREKSFKRLNDKRIEKINANLKIT-SDF---  125 (460)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHH---TTCEEEEECSCHHHHHHHHHHHHHHHHHTTSCCHHHHHHHHTTEEEE-SCG---
T ss_pred             cCCEEEEECCCHHHHHHHHHHHH---CCCeEEEEECcHHHHHHHHHHHHHHHHHcCCCCHHHHHHHhcceEEe-CCH---
Confidence            3479999999998876 444555   689999999999821 11122221   22311        1355553 332   


Q ss_pred             hhcCCCcceeehhhhccCChhHHHHHHHHHHhhccCCcEEEEe
Q 042119          197 KEQLGEYDCIFLAALVGMSKEEKLTILGHIRKYMKDGGILLVR  239 (286)
Q Consensus       197 ~~~l~~fD~V~~aalvg~~~~~k~~vl~~l~~~l~pgg~lv~r  239 (286)
                       ..+.+.|+|+.+..  -+.+-|..++.++.+.++||.+|+..
T Consensus       126 -~al~~aDlVIeAVp--e~~~vk~~v~~~l~~~~~~~aIlasn  165 (460)
T 3k6j_A          126 -HKLSNCDLIVESVI--EDMKLKKELFANLENICKSTCIFGTN  165 (460)
T ss_dssp             -GGCTTCSEEEECCC--SCHHHHHHHHHHHHTTSCTTCEEEEC
T ss_pred             -HHHccCCEEEEcCC--CCHHHHHHHHHHHHhhCCCCCEEEec
Confidence             24678999998753  24467889999999999999988754

>1l7d_A Nicotinamide nucleotide transhydrogenase, subunit alpha 1; transhydrogenase domain I, oxidoreductase; 1.81A {Rhodospirillum rubrum} SCOP: c.2.1.4 c.23.12.2 PDB: 1hzz_A* 1f8g_A 1l7e_A* 1u28_A* 1u2d_A* 1u2g_A* 1xlt_A* 2oo5_A* 2oor_A* 2frd_A* 2fsv_A* 1nm5_A* 2fr8_A* 1ptj_A*

Probab=97.16  E-value=0.0002  Score=67.62  Aligned_cols=99  Identities=22%  Similarity=0.257  Sum_probs=66.4

Q ss_pred             CCCEEEEeccCCChhhHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEE---Ec---------------
Q 042119          130 QPKKVAFVGSGPMPLTSIIMAKHHLTSTHFDNFDIDEAANDVARSIVASDAEFEGRMKFL---TR---------------  191 (286)
Q Consensus       130 ~~~~VL~IG~G~lp~tai~lA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~g~l~~~i~f~---~~---------------  191 (286)
                      ++++|+.+|+|+.|..++.+++.  .|++|+.+|++++..+.+++    +|.     ++.   ..               
T Consensus       171 ~g~~V~ViGaG~iG~~aa~~a~~--~Ga~V~~~d~~~~~~~~~~~----~Ga-----~~~~i~~~~~~~~~~~~~~~~~~  239 (384)
T 1l7d_A          171 PPARVLVFGVGVAGLQAIATAKR--LGAVVMATDVRAATKEQVES----LGG-----KFITVDDEAMKTAETAGGYAKEM  239 (384)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHH--TTCEEEEECSCSTTHHHHHH----TTC-----EECCC------------------
T ss_pred             CCCEEEEECCCHHHHHHHHHHHH--CCCEEEEEeCCHHHHHHHHH----cCC-----eEEeecccccccccccccchhhc
Confidence            68999999999999999999984  68999999999988776654    441     111   10               


Q ss_pred             -------cccchhhcCCCcceeehhhhccCChhHHHHHHHHHHhhccCCcEEEEee
Q 042119          192 -------DIMEVKEQLGEYDCIFLAALVGMSKEEKLTILGHIRKYMKDGGILLVRS  240 (286)
Q Consensus       192 -------D~~~~~~~l~~fD~V~~aalvg~~~~~k~~vl~~l~~~l~pgg~lv~r~  240 (286)
                             +...+...+.++|+|+.+.++.....++ -+.++..+.|+||++++.-.
T Consensus       240 s~~~~~~~~~~l~~~~~~aDvVi~~~~~pg~~~~~-li~~~~l~~mk~g~vivdva  294 (384)
T 1l7d_A          240 GEEFRKKQAEAVLKELVKTDIAITTALIPGKPAPV-LITEEMVTKMKPGSVIIDLA  294 (384)
T ss_dssp             -----CCHHHHHHHHHTTCSEEEECCCCTTSCCCC-CSCHHHHTTSCTTCEEEETT
T ss_pred             CHHHHhhhHHHHHHHhCCCCEEEECCccCCCCCCe-eeCHHHHhcCCCCCEEEEEe
Confidence                   0011222335799999776552111111 12356778899999988765

>1ldn_A L-lactate dehydrogenase; oxidoreductase(CHOH(D)-NAD(A)); HET: FBP NAD; 2.50A {Geobacillus stearothermophilus} SCOP: c.2.1.5 d.162.1.1 PDB: 1ldb_A 2ldb_A*

Probab=97.15  E-value=0.0044  Score=56.81  Aligned_cols=105  Identities=12%  Similarity=0.083  Sum_probs=69.7

Q ss_pred             CCCEEEEeccCCChhhHHHHHhhcCCCcEEEEEeCChHHHH-HHHHHHHhcCCCCCCeEEEEccccchhhcCCCcceeeh
Q 042119          130 QPKKVAFVGSGPMPLTSIIMAKHHLTSTHFDNFDIDEAAND-VARSIVASDAEFEGRMKFLTRDIMEVKEQLGEYDCIFL  208 (286)
Q Consensus       130 ~~~~VL~IG~G~lp~tai~lA~~~~~g~~V~~iDid~~ai~-~Ar~~~~~~g~l~~~i~f~~~D~~~~~~~l~~fD~V~~  208 (286)
                      ...+|..||+|.+|.+............+|+.+|++++..+ .+..+......+..++++..++    ..++.+.|+|++
T Consensus         5 ~~~kI~IIGaG~vG~sla~~l~~~~~~~ev~l~Di~~~~~~~~~~dl~~~~~~~~~~~~i~~~~----~~al~~aDvVii   80 (316)
T 1ldn_A            5 GGARVVVIGAGFVGASYVFALMNQGIADEIVLIDANESKAIGDAMDFNHGKVFAPKPVDIWHGD----YDDCRDADLVVI   80 (316)
T ss_dssp             TSCEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSSHHHHHHHHHHHHHHTTSSSSCCEEEECC----GGGTTTCSEEEE
T ss_pred             CCCEEEEECcCHHHHHHHHHHHhCCCCCEEEEEeCCcchHHHHHhhHHHHhhhcCCCeEEEcCc----HHHhCCCCEEEE
Confidence            45799999999999876655542223458999999998555 3566666544222356666543    234678999998


Q ss_pred             hhhccCC------------hhHHHHHHHHHHhhccCCcEEEEe
Q 042119          209 AALVGMS------------KEEKLTILGHIRKYMKDGGILLVR  239 (286)
Q Consensus       209 aalvg~~------------~~~k~~vl~~l~~~l~pgg~lv~r  239 (286)
                      ++-++..            .+-+.++.+.+.++ .|++.+++-
T Consensus        81 a~~~~~~~g~~r~dl~~~n~~i~~~i~~~i~~~-~p~a~~iv~  122 (316)
T 1ldn_A           81 CAGANQKPGETRLDLVDKNIAIFRSIVESVMAS-GFQGLFLVA  122 (316)
T ss_dssp             CCSCCCCTTTCSGGGHHHHHHHHHHHHHHHHHH-TCCSEEEEC
T ss_pred             cCCCCCCCCCCHHHHHHcChHHHHHHHHHHHHH-CCCCEEEEe
Confidence            8654221            13466677777777 588887774

>3gcz_A Polyprotein; flavivirus, RNA capping, methyltransferase, viral enzyme STR ATP-binding, nucleotide-binding, RNA replication, structura genomics; HET: SAM; 1.70A {Yokose virus}

Probab=97.15  E-value=0.00024  Score=64.66  Aligned_cols=111  Identities=11%  Similarity=0.119  Sum_probs=66.6

Q ss_pred             HhcCCCCCCEEEEeccCCChhhHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCC-eEEEEc-cccchhhcCC
Q 042119          124 SENGVVQPKKVAFVGSGPMPLTSIIMAKHHLTSTHFDNFDIDEAANDVARSIVASDAEFEGR-MKFLTR-DIMEVKEQLG  201 (286)
Q Consensus       124 ~~~~~~~~~~VL~IG~G~lp~tai~lA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~g~l~~~-i~f~~~-D~~~~~~~l~  201 (286)
                      .++.+.++.+|||+||||+|.+-....+  .+-..|+|+|+....-..+... ...|   .+ +.+.+. |+.++  ...
T Consensus        84 eK~~Lk~~~~VLDLGaAPGGWsQvAa~~--~gv~sV~GvdvG~d~~~~pi~~-~~~g---~~ii~~~~~~dv~~l--~~~  155 (282)
T 3gcz_A           84 ERGYVKPTGIVVDLGCGRGGWSYYAASL--KNVKKVMAFTLGVQGHEKPIMR-TTLG---WNLIRFKDKTDVFNM--EVI  155 (282)
T ss_dssp             HTTSCCCCEEEEEETCTTCHHHHHHHTS--TTEEEEEEECCCCTTSCCCCCC-CBTT---GGGEEEECSCCGGGS--CCC
T ss_pred             HhcCCCCCCEEEEeCCCCCHHHHHHHHh--cCCCeeeeEEeccCcccccccc-ccCC---CceEEeeCCcchhhc--CCC
Confidence            3556788899999999999998655544  3455799999986532222110 1122   23 334333 44332  225


Q ss_pred             Ccceeehhhh--ccCChhH---HHHHHHHHHhhccCC--cEEEEeecC
Q 042119          202 EYDCIFLAAL--VGMSKEE---KLTILGHIRKYMKDG--GILLVRSAK  242 (286)
Q Consensus       202 ~fD~V~~aal--vg~~~~~---k~~vl~~l~~~l~pg--g~lv~r~~~  242 (286)
                      .+|+|+.+..  .|...-+   -..+|+-..+.|+||  |.+++.-..
T Consensus       156 ~~DvVLSDmApnsG~~~~D~~rs~~LL~~A~~~Lk~g~~G~Fv~KvF~  203 (282)
T 3gcz_A          156 PGDTLLCDIGESSPSIAVEEQRTLRVLNCAKQWLQEGNYTEFCIKVLC  203 (282)
T ss_dssp             CCSEEEECCCCCCSCHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEESC
T ss_pred             CcCEEEecCccCCCChHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEec
Confidence            7999986532  1221111   123566667899999  999997655

>3ggo_A Prephenate dehydrogenase; TYRA, HPP, NADH, alpha-beta, oxidoreductase; HET: NAI ENO; 2.15A {Aquifex aeolicus} PDB: 3ggg_D* 3ggp_A*

Probab=97.14  E-value=0.0015  Score=59.85  Aligned_cols=92  Identities=16%  Similarity=0.133  Sum_probs=63.6

Q ss_pred             CCEEEEeccCCChhhHH-HHHhhcCCCc--EEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEccccchhhcCCCcceee
Q 042119          131 PKKVAFVGSGPMPLTSI-IMAKHHLTST--HFDNFDIDEAANDVARSIVASDAEFEGRMKFLTRDIMEVKEQLGEYDCIF  207 (286)
Q Consensus       131 ~~~VL~IG~G~lp~tai-~lA~~~~~g~--~V~~iDid~~ai~~Ar~~~~~~g~l~~~i~f~~~D~~~~~~~l~~fD~V~  207 (286)
                      .++|.+||+|.+|.+-. .+++   .|.  +|+++|.+++.++.+++    .| ..+  . ...|..+.  ...+.|+|+
T Consensus        33 ~~kI~IIG~G~mG~slA~~l~~---~G~~~~V~~~dr~~~~~~~a~~----~G-~~~--~-~~~~~~~~--~~~~aDvVi   99 (314)
T 3ggo_A           33 MQNVLIVGVGFMGGSFAKSLRR---SGFKGKIYGYDINPESISKAVD----LG-IID--E-GTTSIAKV--EDFSPDFVM   99 (314)
T ss_dssp             CSEEEEESCSHHHHHHHHHHHH---TTCCSEEEEECSCHHHHHHHHH----TT-SCS--E-EESCTTGG--GGGCCSEEE
T ss_pred             CCEEEEEeeCHHHHHHHHHHHh---CCCCCEEEEEECCHHHHHHHHH----CC-Ccc--h-hcCCHHHH--hhccCCEEE
Confidence            37999999999887643 3333   566  99999999998877654    56 221  1 22343220  235789999


Q ss_pred             hhhhccCChhHHHHHHHHHHhhccCCcEEEEe
Q 042119          208 LAALVGMSKEEKLTILGHIRKYMKDGGILLVR  239 (286)
Q Consensus       208 ~aalvg~~~~~k~~vl~~l~~~l~pgg~lv~r  239 (286)
                      ++.-.    ....++++++.+.++||.+|+--
T Consensus       100 lavp~----~~~~~vl~~l~~~l~~~~iv~d~  127 (314)
T 3ggo_A          100 LSSPV----RTFREIAKKLSYILSEDATVTDQ  127 (314)
T ss_dssp             ECSCG----GGHHHHHHHHHHHSCTTCEEEEC
T ss_pred             EeCCH----HHHHHHHHHHhhccCCCcEEEEC
Confidence            87543    45677999999999999877643

>1x13_A NAD(P) transhydrogenase subunit alpha; NAD(H)-binding domain, rossmann fold, oxidoreductase; 1.90A {Escherichia coli} PDB: 1x14_A* 1x15_A* 2bru_A*

Probab=97.14  E-value=0.00015  Score=69.06  Aligned_cols=99  Identities=27%  Similarity=0.353  Sum_probs=66.3

Q ss_pred             CCCCEEEEeccCCChhhHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEcccc--------------
Q 042119          129 VQPKKVAFVGSGPMPLTSIIMAKHHLTSTHFDNFDIDEAANDVARSIVASDAEFEGRMKFLTRDIM--------------  194 (286)
Q Consensus       129 ~~~~~VL~IG~G~lp~tai~lA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~g~l~~~i~f~~~D~~--------------  194 (286)
                      -++++|+.+|+|+.|..++.+|+.  .|++|+.+|++++..+.+++    +|.     ++...|..              
T Consensus       170 l~g~~V~ViGaG~iG~~aa~~a~~--~Ga~V~v~D~~~~~~~~~~~----lGa-----~~~~~~~~~~~~~~~g~~~~~~  238 (401)
T 1x13_A          170 VPPAKVMVIGAGVAGLAAIGAANS--LGAIVRAFDTRPEVKEQVQS----MGA-----EFLELDFKEEAGSGDGYAKVMS  238 (401)
T ss_dssp             ECCCEEEEECCSHHHHHHHHHHHH--TTCEEEEECSCGGGHHHHHH----TTC-----EECCC--------CCHHHHHHS
T ss_pred             cCCCEEEEECCCHHHHHHHHHHHH--CCCEEEEEcCCHHHHHHHHH----cCC-----EEEEecccccccccccchhhcc
Confidence            368999999999999999999984  68999999999988777643    452     22211110              


Q ss_pred             ---------chhhcCCCcceeehhhhc-cCChhHHHHHHHHHHhhccCCcEEEEee
Q 042119          195 ---------EVKEQLGEYDCIFLAALV-GMSKEEKLTILGHIRKYMKDGGILLVRS  240 (286)
Q Consensus       195 ---------~~~~~l~~fD~V~~aalv-g~~~~~k~~vl~~l~~~l~pgg~lv~r~  240 (286)
                               .+...+.++|+|+.+.++ |.. .++ -+-++..+.|+||++|+.-.
T Consensus       239 ~~~~~~~~~~l~e~~~~aDvVI~~~~~pg~~-ap~-li~~~~l~~mk~g~vIVdva  292 (401)
T 1x13_A          239 DAFIKAEMELFAAQAKEVDIIVTTALIPGKP-APK-LITREMVDSMKAGSVIVDLA  292 (401)
T ss_dssp             HHHHHHHHHHHHHHHHHCSEEEECCCCTTSC-CCC-CBCHHHHHTSCTTCEEEETT
T ss_pred             HHHHHHHHHHHHHHhCCCCEEEECCccCCCC-CCe-eeCHHHHhcCCCCcEEEEEc
Confidence                     122222468999987655 321 111 12246778899999988765

>2cdc_A Glucose dehydrogenase glucose 1-dehydrogenase, DHG-1; reductase, oxidoreductase, MDR family; HET: XYS XYP NAP; 1.50A {Sulfolobus solfataricus} PDB: 2cdb_A* 2cd9_A 2cda_A*

Probab=97.13  E-value=0.00047  Score=64.01  Aligned_cols=92  Identities=17%  Similarity=0.246  Sum_probs=65.3

Q ss_pred             CCEEEEeccCCChhhHHHHHhhcCCCcEEEEEeCCh---HHHHHHHHHHHhcCCCCCCeEEEEccccc-hh-hcCCCcce
Q 042119          131 PKKVAFVGSGPMPLTSIIMAKHHLTSTHFDNFDIDE---AANDVARSIVASDAEFEGRMKFLTRDIME-VK-EQLGEYDC  205 (286)
Q Consensus       131 ~~~VL~IG~G~lp~tai~lA~~~~~g~~V~~iDid~---~ai~~Ar~~~~~~g~l~~~i~f~~~D~~~-~~-~~l~~fD~  205 (286)
                      +++||.+|+|++|..++.+|+.  .|++|+++|.++   +..+.+++    +|.  +.+. .. |..+ +. .. .++|+
T Consensus       181 g~~VlV~GaG~vG~~~~q~a~~--~Ga~Vi~~~~~~~~~~~~~~~~~----~ga--~~v~-~~-~~~~~~~~~~-~~~d~  249 (366)
T 2cdc_A          181 CRKVLVVGTGPIGVLFTLLFRT--YGLEVWMANRREPTEVEQTVIEE----TKT--NYYN-SS-NGYDKLKDSV-GKFDV  249 (366)
T ss_dssp             TCEEEEESCHHHHHHHHHHHHH--HTCEEEEEESSCCCHHHHHHHHH----HTC--EEEE-CT-TCSHHHHHHH-CCEEE
T ss_pred             CCEEEEECCCHHHHHHHHHHHh--CCCEEEEEeCCccchHHHHHHHH----hCC--ceec-hH-HHHHHHHHhC-CCCCE
Confidence            8999999999999999999984  688999999998   77776655    462  2221 11 1111 11 11 46999


Q ss_pred             eehhhhccCChhHHHHHH-HHHHhhccCCcEEEEee
Q 042119          206 IFLAALVGMSKEEKLTIL-GHIRKYMKDGGILLVRS  240 (286)
Q Consensus       206 V~~aalvg~~~~~k~~vl-~~l~~~l~pgg~lv~r~  240 (286)
                      ||.++-.  .     ..+ +...+.|++||+++.-.
T Consensus       250 vid~~g~--~-----~~~~~~~~~~l~~~G~iv~~g  278 (366)
T 2cdc_A          250 IIDATGA--D-----VNILGNVIPLLGRNGVLGLFG  278 (366)
T ss_dssp             EEECCCC--C-----THHHHHHGGGEEEEEEEEECS
T ss_pred             EEECCCC--h-----HHHHHHHHHHHhcCCEEEEEe
Confidence            9966432  1     145 78889999999998865

>2zb4_A Prostaglandin reductase 2; rossmann fold, alternative splicing, cytoplasm, NADP, oxidoreductase; HET: NAP 5OP; 1.63A {Homo sapiens} PDB: 2zb7_A* 2zb8_A* 2w98_A* 2vna_A* 2w4q_A* 1vj1_A 2zb3_A*

Probab=97.13  E-value=0.0004  Score=64.11  Aligned_cols=101  Identities=9%  Similarity=0.020  Sum_probs=69.9

Q ss_pred             HhcCCCCC--CEEEEecc-CCChhhHHHHHhhcCCCc-EEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEcc--ccchh
Q 042119          124 SENGVVQP--KKVAFVGS-GPMPLTSIIMAKHHLTST-HFDNFDIDEAANDVARSIVASDAEFEGRMKFLTRD--IMEVK  197 (286)
Q Consensus       124 ~~~~~~~~--~~VL~IG~-G~lp~tai~lA~~~~~g~-~V~~iDid~~ai~~Ar~~~~~~g~l~~~i~f~~~D--~~~~~  197 (286)
                      ....++++  ++||..|+ |++|..++.+|+.  .|+ +|+++|.+++..+.+++.   +|.   ...+-..+  ..+..
T Consensus       152 ~~~~~~~g~~~~vlI~GasggiG~~~~~~a~~--~Ga~~Vi~~~~~~~~~~~~~~~---~g~---~~~~d~~~~~~~~~~  223 (357)
T 2zb4_A          152 EKGHITAGSNKTMVVSGAAGACGSVAGQIGHF--LGCSRVVGICGTHEKCILLTSE---LGF---DAAINYKKDNVAEQL  223 (357)
T ss_dssp             HHSCCCTTSCCEEEESSTTBHHHHHHHHHHHH--TTCSEEEEEESCHHHHHHHHHT---SCC---SEEEETTTSCHHHHH
T ss_pred             HhcCCCCCCccEEEEECCCcHHHHHHHHHHHH--CCCCeEEEEeCCHHHHHHHHHH---cCC---ceEEecCchHHHHHH
Confidence            34567888  99999998 9999999999984  788 999999999887766542   562   22221111  11111


Q ss_pred             hc-C-CCcceeehhhhccCChhHHHHHHHHHHhhccCCcEEEEee
Q 042119          198 EQ-L-GEYDCIFLAALVGMSKEEKLTILGHIRKYMKDGGILLVRS  240 (286)
Q Consensus       198 ~~-l-~~fD~V~~aalvg~~~~~k~~vl~~l~~~l~pgg~lv~r~  240 (286)
                      .. . +++|+|+.++.      .  ..++...+.|++||+++.-.
T Consensus       224 ~~~~~~~~d~vi~~~G------~--~~~~~~~~~l~~~G~iv~~G  260 (357)
T 2zb4_A          224 RESCPAGVDVYFDNVG------G--NISDTVISQMNENSHIILCG  260 (357)
T ss_dssp             HHHCTTCEEEEEESCC------H--HHHHHHHHTEEEEEEEEECC
T ss_pred             HHhcCCCCCEEEECCC------H--HHHHHHHHHhccCcEEEEEC
Confidence            11 1 26999986642      1  46788899999999998754

>3pi7_A NADH oxidoreductase; groes-like fold, NAD(P)-binding rossmann fold, structural GE joint center for structural genomics, JCSG; HET: MSE; 1.71A {Mesorhizobium loti}

Probab=97.13  E-value=0.00016  Score=66.66  Aligned_cols=97  Identities=9%  Similarity=-0.020  Sum_probs=64.3

Q ss_pred             CCC-CEEEEe-ccCCChhhHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEccccchhhcC---CCc
Q 042119          129 VQP-KKVAFV-GSGPMPLTSIIMAKHHLTSTHFDNFDIDEAANDVARSIVASDAEFEGRMKFLTRDIMEVKEQL---GEY  203 (286)
Q Consensus       129 ~~~-~~VL~I-G~G~lp~tai~lA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~g~l~~~i~f~~~D~~~~~~~l---~~f  203 (286)
                      .++ ++|+.. |+|++|+.++.+|+.  .|++|+++|.+++..+.+++    +|. ..-+.....|..+.....   .++
T Consensus       162 ~~g~~~vli~gg~g~vG~~a~qla~~--~Ga~Vi~~~~~~~~~~~~~~----~Ga-~~~~~~~~~~~~~~v~~~~~~~g~  234 (349)
T 3pi7_A          162 QEGEKAFVMTAGASQLCKLIIGLAKE--EGFRPIVTVRRDEQIALLKD----IGA-AHVLNEKAPDFEATLREVMKAEQP  234 (349)
T ss_dssp             HHCCSEEEESSTTSHHHHHHHHHHHH--HTCEEEEEESCGGGHHHHHH----HTC-SEEEETTSTTHHHHHHHHHHHHCC
T ss_pred             hCCCCEEEEeCCCcHHHHHHHHHHHH--CCCEEEEEeCCHHHHHHHHH----cCC-CEEEECCcHHHHHHHHHHhcCCCC
Confidence            445 566655 999999999999994  68999999999999888875    462 111111111221111111   269


Q ss_pred             ceeehhhhccCChhHHHHHHHHHHhhccCCcEEEEee
Q 042119          204 DCIFLAALVGMSKEEKLTILGHIRKYMKDGGILLVRS  240 (286)
Q Consensus       204 D~V~~aalvg~~~~~k~~vl~~l~~~l~pgg~lv~r~  240 (286)
                      |+||.++..        ..++...+.|++||+++.-.
T Consensus       235 D~vid~~g~--------~~~~~~~~~l~~~G~iv~~G  263 (349)
T 3pi7_A          235 RIFLDAVTG--------PLASAIFNAMPKRARWIIYG  263 (349)
T ss_dssp             CEEEESSCH--------HHHHHHHHHSCTTCEEEECC
T ss_pred             cEEEECCCC--------hhHHHHHhhhcCCCEEEEEe
Confidence            999966431        13467788999999999865

>1h2b_A Alcohol dehydrogenase; oxidoreductase, archaea, hyperthermophIle, zinc; HET: OCA NAJ; 1.62A {Aeropyrum pernix} SCOP: b.35.1.2 c.2.1.1

Probab=97.13  E-value=0.00022  Score=66.13  Aligned_cols=105  Identities=14%  Similarity=0.087  Sum_probs=68.4

Q ss_pred             HHHHh--cCCCCCCEEEEeccCCChhhHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEcc-ccchh
Q 042119          121 TILSE--NGVVQPKKVAFVGSGPMPLTSIIMAKHHLTSTHFDNFDIDEAANDVARSIVASDAEFEGRMKFLTRD-IMEVK  197 (286)
Q Consensus       121 ~~l~~--~~~~~~~~VL~IG~G~lp~tai~lA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~g~l~~~i~f~~~D-~~~~~  197 (286)
                      .++.+  ..++++++||.+|+|++|+.++.+|+. ..|++|+++|.+++..+++++    +|.  +. .+-..+ ..+..
T Consensus       175 ~al~~~~~~~~~g~~VlV~GaG~vG~~avqlak~-~~Ga~Vi~~~~~~~~~~~~~~----lGa--~~-vi~~~~~~~~~v  246 (359)
T 1h2b_A          175 RAVKKAARTLYPGAYVAIVGVGGLGHIAVQLLKV-MTPATVIALDVKEEKLKLAER----LGA--DH-VVDARRDPVKQV  246 (359)
T ss_dssp             HHHHHHHTTCCTTCEEEEECCSHHHHHHHHHHHH-HCCCEEEEEESSHHHHHHHHH----TTC--SE-EEETTSCHHHHH
T ss_pred             HHHHhhccCCCCCCEEEEECCCHHHHHHHHHHHH-cCCCeEEEEeCCHHHHHHHHH----hCC--CE-EEeccchHHHHH
Confidence            34445  567899999999999999999999994 338999999999998888764    562  21 121111 11111


Q ss_pred             hcC--C-CcceeehhhhccCChhHHHHHHHHHHhhccCCcEEEEee
Q 042119          198 EQL--G-EYDCIFLAALVGMSKEEKLTILGHIRKYMKDGGILLVRS  240 (286)
Q Consensus       198 ~~l--~-~fD~V~~aalvg~~~~~k~~vl~~l~~~l~pgg~lv~r~  240 (286)
                      ..+  + ++|+||.+.-.     +....++...+.  +||+++.-.
T Consensus       247 ~~~~~g~g~Dvvid~~G~-----~~~~~~~~~~~~--~~G~~v~~g  285 (359)
T 1h2b_A          247 MELTRGRGVNVAMDFVGS-----QATVDYTPYLLG--RMGRLIIVG  285 (359)
T ss_dssp             HHHTTTCCEEEEEESSCC-----HHHHHHGGGGEE--EEEEEEECC
T ss_pred             HHHhCCCCCcEEEECCCC-----chHHHHHHHhhc--CCCEEEEEe
Confidence            111  2 69999965421     111145555555  899988764

>1tt7_A YHFP; alcohol dehydrogenase, Zn-dependent, NAD, structural genomics, protein structure initiative, PSI; 2.70A {Bacillus subtilis} SCOP: b.35.1.2 c.2.1.1 PDB: 1y9e_A*

Probab=97.13  E-value=0.00018  Score=65.64  Aligned_cols=99  Identities=16%  Similarity=0.200  Sum_probs=68.4

Q ss_pred             hcCCCCCC-EEEEecc-CCChhhHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEccc-cchhhcC-
Q 042119          125 ENGVVQPK-KVAFVGS-GPMPLTSIIMAKHHLTSTHFDNFDIDEAANDVARSIVASDAEFEGRMKFLTRDI-MEVKEQL-  200 (286)
Q Consensus       125 ~~~~~~~~-~VL~IG~-G~lp~tai~lA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~g~l~~~i~f~~~D~-~~~~~~l-  200 (286)
                      +..+.+++ +||.+|+ |++|..++.+|+.  .|++|+++|.+++..+.+++    +|.  +.+ +-..|. .+....+ 
T Consensus       144 ~~~~~~g~~~VlV~Ga~G~vG~~~~q~a~~--~Ga~vi~~~~~~~~~~~~~~----lGa--~~v-~~~~~~~~~~~~~~~  214 (330)
T 1tt7_A          144 QNGLSPEKGSVLVTGATGGVGGIAVSMLNK--RGYDVVASTGNREAADYLKQ----LGA--SEV-ISREDVYDGTLKALS  214 (330)
T ss_dssp             HTTCCGGGCCEEEESTTSHHHHHHHHHHHH--HTCCEEEEESSSSTHHHHHH----HTC--SEE-EEHHHHCSSCCCSSC
T ss_pred             hcCcCCCCceEEEECCCCHHHHHHHHHHHH--CCCEEEEEeCCHHHHHHHHH----cCC--cEE-EECCCchHHHHHHhh
Confidence            34566675 8999997 9999999999994  68999999999988887765    462  211 211111 0111111 


Q ss_pred             -CCcceeehhhhccCChhHHHHHHHHHHhhccCCcEEEEee
Q 042119          201 -GEYDCIFLAALVGMSKEEKLTILGHIRKYMKDGGILLVRS  240 (286)
Q Consensus       201 -~~fD~V~~aalvg~~~~~k~~vl~~l~~~l~pgg~lv~r~  240 (286)
                       ..+|+||.+.  |    .  ..++...+.+++||++++-.
T Consensus       215 ~~~~d~vid~~--g----~--~~~~~~~~~l~~~G~iv~~G  247 (330)
T 1tt7_A          215 KQQWQGAVDPV--G----G--KQLASLLSKIQYGGSVAVSG  247 (330)
T ss_dssp             CCCEEEEEESC--C----T--HHHHHHHTTEEEEEEEEECC
T ss_pred             cCCccEEEECC--c----H--HHHHHHHHhhcCCCEEEEEe
Confidence             3699998654  3    1  25778889999999998764

>3llv_A Exopolyphosphatase-related protein; NAD(P)-binding, rossmann, PSI, M structural genomics; 1.70A {Archaeoglobus fulgidus}

Probab=97.11  E-value=0.0028  Score=50.25  Aligned_cols=95  Identities=8%  Similarity=0.066  Sum_probs=63.4

Q ss_pred             CCEEEEeccCCChhhHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEccccchhh----cCCCccee
Q 042119          131 PKKVAFVGSGPMPLTSIIMAKHHLTSTHFDNFDIDEAANDVARSIVASDAEFEGRMKFLTRDIMEVKE----QLGEYDCI  206 (286)
Q Consensus       131 ~~~VL~IG~G~lp~tai~lA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~g~l~~~i~f~~~D~~~~~~----~l~~fD~V  206 (286)
                      .++|+.+|+|.+|........  ..|.+|+++|.+++.++.+++    .|     +.++.+|+.+...    ...++|+|
T Consensus         6 ~~~v~I~G~G~iG~~la~~L~--~~g~~V~~id~~~~~~~~~~~----~~-----~~~~~gd~~~~~~l~~~~~~~~d~v   74 (141)
T 3llv_A            6 RYEYIVIGSEAAGVGLVRELT--AAGKKVLAVDKSKEKIELLED----EG-----FDAVIADPTDESFYRSLDLEGVSAV   74 (141)
T ss_dssp             CCSEEEECCSHHHHHHHHHHH--HTTCCEEEEESCHHHHHHHHH----TT-----CEEEECCTTCHHHHHHSCCTTCSEE
T ss_pred             CCEEEEECCCHHHHHHHHHHH--HCCCeEEEEECCHHHHHHHHH----CC-----CcEEECCCCCHHHHHhCCcccCCEE
Confidence            468999999988775544433  268999999999998776654    34     5788899876321    23578998


Q ss_pred             ehhhhccCChhHHHHHHHHHHhhccCCcEEEEeec
Q 042119          207 FLAALVGMSKEEKLTILGHIRKYMKDGGILLVRSA  241 (286)
Q Consensus       207 ~~aalvg~~~~~k~~vl~~l~~~l~pgg~lv~r~~  241 (286)
                      +.+.-   +.+.. ..+....+.+. ...++.|..
T Consensus        75 i~~~~---~~~~n-~~~~~~a~~~~-~~~iia~~~  104 (141)
T 3llv_A           75 LITGS---DDEFN-LKILKALRSVS-DVYAIVRVS  104 (141)
T ss_dssp             EECCS---CHHHH-HHHHHHHHHHC-CCCEEEEES
T ss_pred             EEecC---CHHHH-HHHHHHHHHhC-CceEEEEEc
Confidence            86532   22333 34445556666 677777753

>1id1_A Putative potassium channel protein; RCK domain, E.coli potassium channel, BK channel, rossmann fold, membrane protein; 2.40A {Escherichia coli} SCOP: c.2.1.9

Probab=97.09  E-value=0.0031  Score=50.97  Aligned_cols=98  Identities=6%  Similarity=0.014  Sum_probs=65.1

Q ss_pred             CCEEEEeccCCChhhHHHHHhhcCCCcEEEEEeCCh-HHHHHHHHHHHhcCCCCCCeEEEEccccchh----hcCCCcce
Q 042119          131 PKKVAFVGSGPMPLTSIIMAKHHLTSTHFDNFDIDE-AANDVARSIVASDAEFEGRMKFLTRDIMEVK----EQLGEYDC  205 (286)
Q Consensus       131 ~~~VL~IG~G~lp~tai~lA~~~~~g~~V~~iDid~-~ai~~Ar~~~~~~g~l~~~i~f~~~D~~~~~----~~l~~fD~  205 (286)
                      ..+|+.+|+|.+|........  ..|.+|+.+|.++ +..+..++.   ..   ..+.++.||+.+..    ..+.++|+
T Consensus         3 ~~~vlI~G~G~vG~~la~~L~--~~g~~V~vid~~~~~~~~~~~~~---~~---~~~~~i~gd~~~~~~l~~a~i~~ad~   74 (153)
T 1id1_A            3 KDHFIVCGHSILAINTILQLN--QRGQNVTVISNLPEDDIKQLEQR---LG---DNADVIPGDSNDSSVLKKAGIDRCRA   74 (153)
T ss_dssp             CSCEEEECCSHHHHHHHHHHH--HTTCCEEEEECCCHHHHHHHHHH---HC---TTCEEEESCTTSHHHHHHHTTTTCSE
T ss_pred             CCcEEEECCCHHHHHHHHHHH--HCCCCEEEEECCChHHHHHHHHh---hc---CCCeEEEcCCCCHHHHHHcChhhCCE
Confidence            468999999987765444333  2689999999984 544333332   22   34789999987532    13568999


Q ss_pred             eehhhhccCChhHHHHHHHHHHhhccCCcEEEEee
Q 042119          206 IFLAALVGMSKEEKLTILGHIRKYMKDGGILLVRS  240 (286)
Q Consensus       206 V~~aalvg~~~~~k~~vl~~l~~~l~pgg~lv~r~  240 (286)
                      |+.+.-   + ......+....+.+.|...+++|-
T Consensus        75 vi~~~~---~-d~~n~~~~~~a~~~~~~~~ii~~~  105 (153)
T 1id1_A           75 ILALSD---N-DADNAFVVLSAKDMSSDVKTVLAV  105 (153)
T ss_dssp             EEECSS---C-HHHHHHHHHHHHHHTSSSCEEEEC
T ss_pred             EEEecC---C-hHHHHHHHHHHHHHCCCCEEEEEE
Confidence            886532   1 234456667778888888888875

>1zsy_A Mitochondrial 2-enoyl thioester reductase; medium-chain dehydrogenase/reductase, oxidoreductase, 2-ENOY thioester reductase; 1.75A {Homo sapiens} PDB: 2vcy_A

Probab=97.07  E-value=0.00091  Score=61.85  Aligned_cols=101  Identities=9%  Similarity=0.049  Sum_probs=61.2

Q ss_pred             cCCCCCCEEEEecc-CCChhhHHHHHhhcCCCcEEEEE-eCChHHHHHHHHHHHhcCCCCCCeEEEEc-----cccchhh
Q 042119          126 NGVVQPKKVAFVGS-GPMPLTSIIMAKHHLTSTHFDNF-DIDEAANDVARSIVASDAEFEGRMKFLTR-----DIMEVKE  198 (286)
Q Consensus       126 ~~~~~~~~VL~IG~-G~lp~tai~lA~~~~~g~~V~~i-Did~~ai~~Ar~~~~~~g~l~~~i~f~~~-----D~~~~~~  198 (286)
                      ..+.++++||.+|+ |++|+.++.+|+.  .|++++++ +.++.. +.-++.++++|.  +.+ +-..     ++.+...
T Consensus       163 ~~~~~g~~VlV~Ga~G~vG~~aiqlak~--~Ga~vi~~~~~~~~~-~~~~~~~~~lGa--~~v-i~~~~~~~~~~~~~~~  236 (357)
T 1zsy_A          163 EQLQPGDSVIQNASNSGVGQAVIQIAAA--LGLRTINVVRDRPDI-QKLSDRLKSLGA--EHV-ITEEELRRPEMKNFFK  236 (357)
T ss_dssp             SCCCTTCEEEESSTTSHHHHHHHHHHHH--HTCEEEEEECCCSCH-HHHHHHHHHTTC--SEE-EEHHHHHSGGGGGTTS
T ss_pred             hccCCCCEEEEeCCcCHHHHHHHHHHHH--cCCEEEEEecCccch-HHHHHHHHhcCC--cEE-EecCcchHHHHHHHHh
Confidence            35688999999997 9999999999994  68876655 444322 111233455772  221 2111     1111111


Q ss_pred             cCCCcceeehhhhccCChhHHHHHHHHHHhhccCCcEEEEee
Q 042119          199 QLGEYDCIFLAALVGMSKEEKLTILGHIRKYMKDGGILLVRS  240 (286)
Q Consensus       199 ~l~~fD~V~~aalvg~~~~~k~~vl~~l~~~l~pgg~lv~r~  240 (286)
                      ...++|+||.+.  |   .+.   .....+.++|||+++.-.
T Consensus       237 ~~~~~Dvvid~~--g---~~~---~~~~~~~l~~~G~iv~~G  270 (357)
T 1zsy_A          237 DMPQPRLALNCV--G---GKS---STELLRQLARGGTMVTYG  270 (357)
T ss_dssp             SSCCCSEEEESS--C---HHH---HHHHHTTSCTTCEEEECC
T ss_pred             CCCCceEEEECC--C---cHH---HHHHHHhhCCCCEEEEEe
Confidence            112599999654  2   121   235678999999998764

>3ce6_A Adenosylhomocysteinase; protein-substrate complex, dimer of dimers, NAD binding DOMA amino acid insertional region, hydrolase; HET: ADN NAD; 1.60A {Mycobacterium tuberculosis} PDB: 3dhy_A* 2zj0_A* 2ziz_A* 2zj1_A*

Probab=97.05  E-value=0.00044  Score=67.69  Aligned_cols=90  Identities=24%  Similarity=0.211  Sum_probs=64.9

Q ss_pred             CCCCCEEEEeccCCChhhHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEccccchhhcCCCcceee
Q 042119          128 VVQPKKVAFVGSGPMPLTSIIMAKHHLTSTHFDNFDIDEAANDVARSIVASDAEFEGRMKFLTRDIMEVKEQLGEYDCIF  207 (286)
Q Consensus       128 ~~~~~~VL~IG~G~lp~tai~lA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~g~l~~~i~f~~~D~~~~~~~l~~fD~V~  207 (286)
                      ..++++|+.||+|++|......++.  .|++|+++|+++...+.|++    .| .    ++  .+..+   .+.++|+|+
T Consensus       271 ~l~GktV~IiG~G~IG~~~A~~lka--~Ga~Viv~d~~~~~~~~A~~----~G-a----~~--~~l~e---~l~~aDvVi  334 (494)
T 3ce6_A          271 LIGGKKVLICGYGDVGKGCAEAMKG--QGARVSVTEIDPINALQAMM----EG-F----DV--VTVEE---AIGDADIVV  334 (494)
T ss_dssp             CCTTCEEEEECCSHHHHHHHHHHHH--TTCEEEEECSCHHHHHHHHH----TT-C----EE--CCHHH---HGGGCSEEE
T ss_pred             CCCcCEEEEEccCHHHHHHHHHHHH--CCCEEEEEeCCHHHHHHHHH----cC-C----EE--ecHHH---HHhCCCEEE
Confidence            5789999999999999999888884  68999999999988776654    56 2    22  23322   235789999


Q ss_pred             hhhhccCChhHHHHHHH-HHHhhccCCcEEEEee
Q 042119          208 LAALVGMSKEEKLTILG-HIRKYMKDGGILLVRS  240 (286)
Q Consensus       208 ~aalvg~~~~~k~~vl~-~l~~~l~pgg~lv~r~  240 (286)
                      .+.-.      + .++. ...+.|||||+++.-.
T Consensus       335 ~atgt------~-~~i~~~~l~~mk~ggilvnvG  361 (494)
T 3ce6_A          335 TATGN------K-DIIMLEHIKAMKDHAILGNIG  361 (494)
T ss_dssp             ECSSS------S-CSBCHHHHHHSCTTCEEEECS
T ss_pred             ECCCC------H-HHHHHHHHHhcCCCcEEEEeC
Confidence            76421      1 1222 5667799999987754

>2uyo_A Hypothetical protein ML2640; putative methyltransferase, transferas; 1.7A {Mycobacterium leprae} SCOP: c.66.1.57 PDB: 2ckd_A 2uyq_A*

Probab=97.03  E-value=0.0051  Score=56.50  Aligned_cols=107  Identities=14%  Similarity=0.148  Sum_probs=76.9

Q ss_pred             CCCEEEEeccCCChhhHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCC-CCCCeEEEEccccc-hhhcC--CCcc-
Q 042119          130 QPKKVAFVGSGPMPLTSIIMAKHHLTSTHFDNFDIDEAANDVARSIVASDAE-FEGRMKFLTRDIME-VKEQL--GEYD-  204 (286)
Q Consensus       130 ~~~~VL~IG~G~lp~tai~lA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~g~-l~~~i~f~~~D~~~-~~~~l--~~fD-  204 (286)
                      ..+.|+.+||| ++..+..+..  ..+.+|.-|| .|+.+++.++++...|. -..+..++.+|+.+ +...+  ..|| 
T Consensus       102 g~~QvV~LGaG-lDTra~Rl~~--~~~~~v~evD-~P~vi~~k~~lL~~~~~~~~~~~~~v~~Dl~d~~~~~l~~~g~d~  177 (310)
T 2uyo_A          102 GIRQFVILASG-LDSRAYRLDW--PTGTTVYEID-QPKVLAYKSTTLAEHGVTPTADRREVPIDLRQDWPPALRSAGFDP  177 (310)
T ss_dssp             TCCEEEEETCT-TCCHHHHSCC--CTTCEEEEEE-CHHHHHHHHHHHHHTTCCCSSEEEEEECCTTSCHHHHHHHTTCCT
T ss_pred             CCCeEEEeCCC-CCchhhhccC--CCCcEEEEcC-CHHHHHHHHHHHHhcCCCCCCCeEEEecchHhhHHHHHHhccCCC
Confidence            34689999999 7877666542  2468999999 79999999999986542 14678999999875 11111  2344 


Q ss_pred             ---eeehh--hhccCChhHHHHHHHHHHhhccCCcEEEEee
Q 042119          205 ---CIFLA--ALVGMSKEEKLTILGHIRKYMKDGGILLVRS  240 (286)
Q Consensus       205 ---~V~~a--alvg~~~~~k~~vl~~l~~~l~pgg~lv~r~  240 (286)
                         ++|++  .+.-++.+.-..+++.+.....||+.|++..
T Consensus       178 ~~Pt~~i~Egvl~Yl~~~~~~~ll~~l~~~~~~gs~l~~d~  218 (310)
T 2uyo_A          178 SARTAWLAEGLLMYLPATAQDGLFTEIGGLSAVGSRIAVET  218 (310)
T ss_dssp             TSCEEEEECSCGGGSCHHHHHHHHHHHHHTCCTTCEEEEEC
T ss_pred             CCCEEEEEechHhhCCHHHHHHHHHHHHHhCCCCeEEEEEe
Confidence               33333  2335566777889999999999999999874

>3gqv_A Enoyl reductase; medium-chain reductase (MDR superfamily), rossmann fold, NAD binding, oxidoreductase; HET: NAP; 1.74A {Aspergillus terreus} PDB: 3b6z_A* 3b70_A*

Probab=96.95  E-value=0.00095  Score=62.20  Aligned_cols=97  Identities=10%  Similarity=0.063  Sum_probs=65.4

Q ss_pred             CCCCEEEEecc-CCChhhHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEccccchhhcC--CCcce
Q 042119          129 VQPKKVAFVGS-GPMPLTSIIMAKHHLTSTHFDNFDIDEAANDVARSIVASDAEFEGRMKFLTRDIMEVKEQL--GEYDC  205 (286)
Q Consensus       129 ~~~~~VL~IG~-G~lp~tai~lA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~g~l~~~i~f~~~D~~~~~~~l--~~fD~  205 (286)
                      .++++||.+|+ |++|+.++.+|+.  .|++|+++. +++..+++++    +| ...-+.+...|..+....+  +++|+
T Consensus       163 ~~g~~VlV~Ga~G~vG~~a~qla~~--~Ga~Vi~~~-~~~~~~~~~~----lG-a~~vi~~~~~~~~~~v~~~t~g~~d~  234 (371)
T 3gqv_A          163 SKPVYVLVYGGSTATATVTMQMLRL--SGYIPIATC-SPHNFDLAKS----RG-AEEVFDYRAPNLAQTIRTYTKNNLRY  234 (371)
T ss_dssp             SSCCEEEEESTTSHHHHHHHHHHHH--TTCEEEEEE-CGGGHHHHHH----TT-CSEEEETTSTTHHHHHHHHTTTCCCE
T ss_pred             CCCcEEEEECCCcHHHHHHHHHHHH--CCCEEEEEe-CHHHHHHHHH----cC-CcEEEECCCchHHHHHHHHccCCccE
Confidence            78899999999 8899999999994  789999985 8887776654    67 2212222222222211111  35999


Q ss_pred             eehhhhccCChhHHHHHHHHHHhhc-cCCcEEEEee
Q 042119          206 IFLAALVGMSKEEKLTILGHIRKYM-KDGGILLVRS  240 (286)
Q Consensus       206 V~~aalvg~~~~~k~~vl~~l~~~l-~pgg~lv~r~  240 (286)
                      ||.+.--       ...++...+.| ++||+++.-.
T Consensus       235 v~d~~g~-------~~~~~~~~~~l~~~~G~iv~~g  263 (371)
T 3gqv_A          235 ALDCITN-------VESTTFCFAAIGRAGGHYVSLN  263 (371)
T ss_dssp             EEESSCS-------HHHHHHHHHHSCTTCEEEEESS
T ss_pred             EEECCCc-------hHHHHHHHHHhhcCCCEEEEEe
Confidence            9965421       13566777888 6999998754

>3l9w_A Glutathione-regulated potassium-efflux system Pro linker, ancillary protein KEFF; potassium channel regulation, domains, antiport; HET: FMN AMP GSH; 1.75A {Escherichia coli} PDB: 3eyw_A* 3l9x_A*

Probab=96.86  E-value=0.0031  Score=60.12  Aligned_cols=96  Identities=14%  Similarity=0.076  Sum_probs=70.1

Q ss_pred             CCCEEEEeccCCChhhHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEccccchh----hcCCCcce
Q 042119          130 QPKKVAFVGSGPMPLTSIIMAKHHLTSTHFDNFDIDEAANDVARSIVASDAEFEGRMKFLTRDIMEVK----EQLGEYDC  205 (286)
Q Consensus       130 ~~~~VL~IG~G~lp~tai~lA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~g~l~~~i~f~~~D~~~~~----~~l~~fD~  205 (286)
                      ...+|+.+|+|.+|.......+.  .|..|+.||.|++.++.+++    .|     +.++.||+.+..    ..+...|+
T Consensus         3 ~~~~viIiG~Gr~G~~va~~L~~--~g~~vvvId~d~~~v~~~~~----~g-----~~vi~GDat~~~~L~~agi~~A~~   71 (413)
T 3l9w_A            3 HGMRVIIAGFGRFGQITGRLLLS--SGVKMVVLDHDPDHIETLRK----FG-----MKVFYGDATRMDLLESAGAAKAEV   71 (413)
T ss_dssp             -CCSEEEECCSHHHHHHHHHHHH--TTCCEEEEECCHHHHHHHHH----TT-----CCCEESCTTCHHHHHHTTTTTCSE
T ss_pred             CCCeEEEECCCHHHHHHHHHHHH--CCCCEEEEECCHHHHHHHHh----CC-----CeEEEcCCCCHHHHHhcCCCccCE
Confidence            45789999999988776655542  68999999999999988764    45     457889997642    13457898


Q ss_pred             eehhhhccCChhHHHHHHHHHHhhccCCcEEEEee
Q 042119          206 IFLAALVGMSKEEKLTILGHIRKYMKDGGILLVRS  240 (286)
Q Consensus       206 V~~aalvg~~~~~k~~vl~~l~~~l~pgg~lv~r~  240 (286)
                      |+++.-    .......+-...+.+.|+..+++|.
T Consensus        72 viv~~~----~~~~n~~i~~~ar~~~p~~~Iiara  102 (413)
T 3l9w_A           72 LINAID----DPQTNLQLTEMVKEHFPHLQIIARA  102 (413)
T ss_dssp             EEECCS----SHHHHHHHHHHHHHHCTTCEEEEEE
T ss_pred             EEECCC----ChHHHHHHHHHHHHhCCCCeEEEEE
Confidence            886532    1344455667777889999999985

>2g5c_A Prephenate dehydrogenase; TYRA, oxidoreductase; HET: NAD; 1.90A {Aquifex aeolicus} SCOP: a.100.1.12 c.2.1.6

Probab=96.80  E-value=0.0052  Score=54.55  Aligned_cols=91  Identities=15%  Similarity=0.126  Sum_probs=60.7

Q ss_pred             CEEEEeccCCChhhHHHHHhhcCCCc--EEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEccccchhhcCC-Ccceeeh
Q 042119          132 KKVAFVGSGPMPLTSIIMAKHHLTST--HFDNFDIDEAANDVARSIVASDAEFEGRMKFLTRDIMEVKEQLG-EYDCIFL  208 (286)
Q Consensus       132 ~~VL~IG~G~lp~tai~lA~~~~~g~--~V~~iDid~~ai~~Ar~~~~~~g~l~~~i~f~~~D~~~~~~~l~-~fD~V~~  208 (286)
                      ++|.+||+|.+|.+.......  .|.  +|+++|.+++..+.++    ..| ...  . ...|..+   ... +.|+|++
T Consensus         2 ~~I~iIG~G~mG~~~a~~l~~--~g~~~~V~~~d~~~~~~~~~~----~~g-~~~--~-~~~~~~~---~~~~~aDvVil   68 (281)
T 2g5c_A            2 QNVLIVGVGFMGGSFAKSLRR--SGFKGKIYGYDINPESISKAV----DLG-IID--E-GTTSIAK---VEDFSPDFVML   68 (281)
T ss_dssp             CEEEEESCSHHHHHHHHHHHH--TTCCSEEEEECSCHHHHHHHH----HTT-SCS--E-EESCGGG---GGGTCCSEEEE
T ss_pred             cEEEEEecCHHHHHHHHHHHh--cCCCcEEEEEeCCHHHHHHHH----HCC-Ccc--c-ccCCHHH---HhcCCCCEEEE
Confidence            489999999988765443332  455  8999999999877654    356 221  1 1233322   335 7899998


Q ss_pred             hhhccCChhHHHHHHHHHHhhccCCcEEEEe
Q 042119          209 AALVGMSKEEKLTILGHIRKYMKDGGILLVR  239 (286)
Q Consensus       209 aalvg~~~~~k~~vl~~l~~~l~pgg~lv~r  239 (286)
                      +.-.    ..-.++++.+.+.++||.+++.-
T Consensus        69 avp~----~~~~~v~~~l~~~l~~~~iv~~~   95 (281)
T 2g5c_A           69 SSPV----RTFREIAKKLSYILSEDATVTDQ   95 (281)
T ss_dssp             CSCH----HHHHHHHHHHHHHSCTTCEEEEC
T ss_pred             cCCH----HHHHHHHHHHHhhCCCCcEEEEC
Confidence            7432    34457888888899999876653

>3lkz_A Non-structural protein 5; flavivirus, methyltransferase, inhibitor, P nucleotide-binding, RNA replication, viral protein; HET: SFG; 2.00A {West nile virus}

Probab=96.80  E-value=0.0048  Score=56.58  Aligned_cols=109  Identities=11%  Similarity=0.155  Sum_probs=70.3

Q ss_pred             HhcCCCCCCEEEEeccCCChhhHHHHHhhcCCCc-EEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEc-cccchhhcCC
Q 042119          124 SENGVVQPKKVAFVGSGPMPLTSIIMAKHHLTST-HFDNFDIDEAANDVARSIVASDAEFEGRMKFLTR-DIMEVKEQLG  201 (286)
Q Consensus       124 ~~~~~~~~~~VL~IG~G~lp~tai~lA~~~~~g~-~V~~iDid~~ai~~Ar~~~~~~g~l~~~i~f~~~-D~~~~~~~l~  201 (286)
                      .+..+.++.+|+|+||+|+|.|-.+..+   .|+ .|.|+|+-..--+.= .+++.+| . .-|.|..+ |+..++.  .
T Consensus        88 ~~~~l~~~~~VlDLGaapGGwsq~~~~~---~gv~~V~avdvG~~~he~P-~~~~ql~-w-~lV~~~~~~Dv~~l~~--~  159 (321)
T 3lkz_A           88 ERRFLEPVGKVIDLGCGRGGWCYYMATQ---KRVQEVRGYTKGGPGHEEP-QLVQSYG-W-NIVTMKSGVDVFYRPS--E  159 (321)
T ss_dssp             HTTSCCCCEEEEEETCTTCHHHHHHTTC---TTEEEEEEECCCSTTSCCC-CCCCBTT-G-GGEEEECSCCTTSSCC--C
T ss_pred             HhcCCCCCCEEEEeCCCCCcHHHHHHhh---cCCCEEEEEEcCCCCccCc-chhhhcC-C-cceEEEeccCHhhCCC--C
Confidence            3556788899999999999998655544   454 599999985511000 0012333 1 34888888 8866554  4


Q ss_pred             Ccceeehhhhc--cCChhHH---HHHHHHHHhhccCC-cEEEEee
Q 042119          202 EYDCIFLAALV--GMSKEEK---LTILGHIRKYMKDG-GILLVRS  240 (286)
Q Consensus       202 ~fD~V~~aalv--g~~~~~k---~~vl~~l~~~l~pg-g~lv~r~  240 (286)
                      .+|.|+.+..=  +-+.-+.   .++|+-+.+.|++| |-+++.-
T Consensus       160 ~~D~ivcDigeSs~~~~ve~~Rtl~vLel~~~wL~~~~~~f~~KV  204 (321)
T 3lkz_A          160 CCDTLLCDIGESSSSAEVEEHRTIRVLEMVEDWLHRGPREFCVKV  204 (321)
T ss_dssp             CCSEEEECCCCCCSCHHHHHHHHHHHHHHHHHHHTTCCCEEEEEE
T ss_pred             CCCEEEEECccCCCChhhhhhHHHHHHHHHHHHhccCCCcEEEEE
Confidence            69999866431  1111122   34777778899998 8888854

>2v6b_A L-LDH, L-lactate dehydrogenase; oxidoreductase, radioresistance, NAD, cytoplasm, mesophilic, glycolysis; 2.50A {Deinococcus radiodurans}

Probab=96.78  E-value=0.0056  Score=55.75  Aligned_cols=100  Identities=18%  Similarity=0.202  Sum_probs=62.3

Q ss_pred             CEEEEeccCCChhhHHHHHhhcCCCc--EEEEEeCChHHHHH-HHHHHHhcCCCCCCeEEEEccccchhhcCCCcceeeh
Q 042119          132 KKVAFVGSGPMPLTSIIMAKHHLTST--HFDNFDIDEAANDV-ARSIVASDAEFEGRMKFLTRDIMEVKEQLGEYDCIFL  208 (286)
Q Consensus       132 ~~VL~IG~G~lp~tai~lA~~~~~g~--~V~~iDid~~ai~~-Ar~~~~~~g~l~~~i~f~~~D~~~~~~~l~~fD~V~~  208 (286)
                      ++|..||+|.+|.+.......  .|.  +|+.+|++++.++- +.++..... +...+++...|.    .++.+.|+|++
T Consensus         1 mkI~VIGaG~vG~~la~~la~--~g~~~eV~L~D~~~~~~~~~~~~l~~~~~-~~~~~~i~~~~~----~a~~~aDvVIi   73 (304)
T 2v6b_A            1 MKVGVVGTGFVGSTAAFALVL--RGSCSELVLVDRDEDRAQAEAEDIAHAAP-VSHGTRVWHGGH----SELADAQVVIL   73 (304)
T ss_dssp             CEEEEECCSHHHHHHHHHHHH--TTCCSEEEEECSSHHHHHHHHHHHTTSCC-TTSCCEEEEECG----GGGTTCSEEEE
T ss_pred             CEEEEECCCHHHHHHHHHHHh--CCCCCEEEEEeCCHHHHHHHHHhhhhhhh-hcCCeEEEECCH----HHhCCCCEEEE
Confidence            489999999998876554442  455  89999999986653 333322222 123445544342    34568999998


Q ss_pred             hhhccC------------ChhHHHHHHHHHHhhccCCcEEEEe
Q 042119          209 AALVGM------------SKEEKLTILGHIRKYMKDGGILLVR  239 (286)
Q Consensus       209 aalvg~------------~~~~k~~vl~~l~~~l~pgg~lv~r  239 (286)
                      ++-+..            +.+-+.++.+.+.+. .|++.+++-
T Consensus        74 ~~~~~~~~g~~r~dl~~~n~~i~~~i~~~i~~~-~p~~~vi~~  115 (304)
T 2v6b_A           74 TAGANQKPGESRLDLLEKNADIFRELVPQITRA-APDAVLLVT  115 (304)
T ss_dssp             CC------------CHHHHHHHHHHHHHHHHHH-CSSSEEEEC
T ss_pred             cCCCCCCCCCcHHHHHHhHHHHHHHHHHHHHHh-CCCeEEEEe
Confidence            864311            112346777788877 699988763

>2f1k_A Prephenate dehydrogenase; tyrosine synthesis, X-RA crystallography structure, oxidoreductase; HET: OMT NAP; 1.55A {Synechocystis SP} SCOP: a.100.1.12 c.2.1.6

Probab=96.77  E-value=0.0071  Score=53.53  Aligned_cols=89  Identities=13%  Similarity=0.081  Sum_probs=60.2

Q ss_pred             CEEEEeccCCChhhHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEccccchhhcCCCcceeehhhh
Q 042119          132 KKVAFVGSGPMPLTSIIMAKHHLTSTHFDNFDIDEAANDVARSIVASDAEFEGRMKFLTRDIMEVKEQLGEYDCIFLAAL  211 (286)
Q Consensus       132 ~~VL~IG~G~lp~tai~lA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~g~l~~~i~f~~~D~~~~~~~l~~fD~V~~aal  211 (286)
                      ++|.+||+|.+|.+......  ..|.+|+++|.+++..+.++    +.| ...  + ...|..+   . .+.|+|+++.-
T Consensus         1 m~i~iiG~G~~G~~~a~~l~--~~g~~V~~~~~~~~~~~~~~----~~g-~~~--~-~~~~~~~---~-~~~D~vi~av~   66 (279)
T 2f1k_A            1 MKIGVVGLGLIGASLAGDLR--RRGHYLIGVSRQQSTCEKAV----ERQ-LVD--E-AGQDLSL---L-QTAKIIFLCTP   66 (279)
T ss_dssp             CEEEEECCSHHHHHHHHHHH--HTTCEEEEECSCHHHHHHHH----HTT-SCS--E-EESCGGG---G-TTCSEEEECSC
T ss_pred             CEEEEEcCcHHHHHHHHHHH--HCCCEEEEEECCHHHHHHHH----hCC-CCc--c-ccCCHHH---h-CCCCEEEEECC
Confidence            47999999988865433222  15779999999998876653    346 221  2 2334333   2 57899998743


Q ss_pred             ccCChhHHHHHHHHHHhhccCCcEEEE
Q 042119          212 VGMSKEEKLTILGHIRKYMKDGGILLV  238 (286)
Q Consensus       212 vg~~~~~k~~vl~~l~~~l~pgg~lv~  238 (286)
                          ......+++.+.+.++||.+++-
T Consensus        67 ----~~~~~~~~~~l~~~~~~~~~vv~   89 (279)
T 2f1k_A           67 ----IQLILPTLEKLIPHLSPTAIVTD   89 (279)
T ss_dssp             ----HHHHHHHHHHHGGGSCTTCEEEE
T ss_pred             ----HHHHHHHHHHHHhhCCCCCEEEE
Confidence                24556788899999999887654

>3gg2_A Sugar dehydrogenase, UDP-glucose/GDP-mannose dehydrogenase family; structural genomics, oxidoreductase, PSI-2; HET: UGA; 1.70A {Porphyromonas gingivalis}

Probab=96.76  E-value=0.004  Score=60.04  Aligned_cols=101  Identities=24%  Similarity=0.267  Sum_probs=66.6

Q ss_pred             CEEEEeccCCChhhHH-HHHhhcCCCcEEEEEeCChHHHHHHHHH------------HHhcCCCCCCeEEEEccccchhh
Q 042119          132 KKVAFVGSGPMPLTSI-IMAKHHLTSTHFDNFDIDEAANDVARSI------------VASDAEFEGRMKFLTRDIMEVKE  198 (286)
Q Consensus       132 ~~VL~IG~G~lp~tai-~lA~~~~~g~~V~~iDid~~ai~~Ar~~------------~~~~g~l~~~i~f~~~D~~~~~~  198 (286)
                      ++|.+||+|.+|.... .|++   .|.+|+++|++++.++..++-            +++.- -..++++. .|..+   
T Consensus         3 mkI~VIG~G~vG~~lA~~La~---~G~~V~~~D~~~~~v~~l~~g~~~i~e~gl~~~l~~~~-~~~~l~~t-~d~~e---   74 (450)
T 3gg2_A            3 LDIAVVGIGYVGLVSATCFAE---LGANVRCIDTDRNKIEQLNSGTIPIYEPGLEKMIARNV-KAGRLRFG-TEIEQ---   74 (450)
T ss_dssp             CEEEEECCSHHHHHHHHHHHH---TTCEEEEECSCHHHHHHHHHTCSCCCSTTHHHHHHHHH-HTTSEEEE-SCHHH---
T ss_pred             CEEEEECcCHHHHHHHHHHHh---cCCEEEEEECCHHHHHHHHcCCCcccCCCHHHHHHhhc-ccCcEEEE-CCHHH---
Confidence            6899999998887643 4454   689999999999988776551            11000 01345542 34332   


Q ss_pred             cCCCcceeehhhhccC------ChhHHHHHHHHHHhhccCCcEEEEee
Q 042119          199 QLGEYDCIFLAALVGM------SKEEKLTILGHIRKYMKDGGILLVRS  240 (286)
Q Consensus       199 ~l~~fD~V~~aalvg~------~~~~k~~vl~~l~~~l~pgg~lv~r~  240 (286)
                      ...+.|+||++.--..      +...-..+++.+.+.+++|.+++..+
T Consensus        75 a~~~aDvViiaVptp~~~~~~~dl~~v~~v~~~i~~~l~~g~iVV~~S  122 (450)
T 3gg2_A           75 AVPEADIIFIAVGTPAGEDGSADMSYVLDAARSIGRAMSRYILIVTKS  122 (450)
T ss_dssp             HGGGCSEEEECCCCCBCTTSSBCCHHHHHHHHHHHHHCCSCEEEEECS
T ss_pred             HHhcCCEEEEEcCCCcccCCCcChHHHHHHHHHHHhhCCCCCEEEEee
Confidence            2346899997742210      11256788999999999999888876

>1zej_A HBD-9, 3-hydroxyacyl-COA dehydrogenase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI; HET: PE8; 2.00A {Archaeoglobus fulgidus}

Probab=96.74  E-value=0.0022  Score=58.55  Aligned_cols=97  Identities=19%  Similarity=0.280  Sum_probs=65.1

Q ss_pred             CCCCEEEEeccCCChhhHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEccccchhhcCCCcceeeh
Q 042119          129 VQPKKVAFVGSGPMPLTSIIMAKHHLTSTHFDNFDIDEAANDVARSIVASDAEFEGRMKFLTRDIMEVKEQLGEYDCIFL  208 (286)
Q Consensus       129 ~~~~~VL~IG~G~lp~tai~lA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~g~l~~~i~f~~~D~~~~~~~l~~fD~V~~  208 (286)
                      ...++|.+||+|.+|-+ +...- . .|..|+.+|+++++++.+.+.+...  .-.++++. .|..    +..+.|+|+.
T Consensus        10 ~~~~~V~vIG~G~MG~~-iA~~l-a-aG~~V~v~d~~~~~~~~~~~~l~~~--~~~~i~~~-~~~~----~~~~aDlVie   79 (293)
T 1zej_A           10 HHHMKVFVIGAGLMGRG-IAIAI-A-SKHEVVLQDVSEKALEAAREQIPEE--LLSKIEFT-TTLE----KVKDCDIVME   79 (293)
T ss_dssp             --CCEEEEECCSHHHHH-HHHHH-H-TTSEEEEECSCHHHHHHHHHHSCGG--GGGGEEEE-SSCT----TGGGCSEEEE
T ss_pred             cCCCeEEEEeeCHHHHH-HHHHH-H-cCCEEEEEECCHHHHHHHHHHHHHH--HhCCeEEe-CCHH----HHcCCCEEEE
Confidence            45689999999988764 22222 3 5889999999999999888762111  01245543 3332    2457899997


Q ss_pred             hhhccCChhHHHHHHHHHHhhccCCcEEEEe
Q 042119          209 AALVGMSKEEKLTILGHIRKYMKDGGILLVR  239 (286)
Q Consensus       209 aalvg~~~~~k~~vl~~l~~~l~pgg~lv~r  239 (286)
                      +..  -+.+-|..++.++.+.  ||.+++..
T Consensus        80 avp--e~~~vk~~l~~~l~~~--~~~Ilasn  106 (293)
T 1zej_A           80 AVF--EDLNTKVEVLREVERL--TNAPLCSN  106 (293)
T ss_dssp             CCC--SCHHHHHHHHHHHHTT--CCSCEEEC
T ss_pred             cCc--CCHHHHHHHHHHHhcC--CCCEEEEE
Confidence            753  2456688898888766  88888654

>2ew2_A 2-dehydropantoate 2-reductase, putative; alpha-structure, alpha-beta structure, structural genomics, protein structure initiative; HET: MSE; 2.00A {Enterococcus faecalis}

Probab=96.72  E-value=0.011  Score=52.74  Aligned_cols=94  Identities=17%  Similarity=0.149  Sum_probs=59.4

Q ss_pred             CEEEEeccCCChhhHHH-HHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEE---------EEccccchhhcCC
Q 042119          132 KKVAFVGSGPMPLTSII-MAKHHLTSTHFDNFDIDEAANDVARSIVASDAEFEGRMKF---------LTRDIMEVKEQLG  201 (286)
Q Consensus       132 ~~VL~IG~G~lp~tai~-lA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~g~l~~~i~f---------~~~D~~~~~~~l~  201 (286)
                      ++|++||+|.+|..... |++   .|.+|+.+|++++.++..++.    | +  .+..         ...+..+....+.
T Consensus         4 m~i~iiG~G~~G~~~a~~l~~---~g~~V~~~~r~~~~~~~~~~~----g-~--~~~~~~~~~~~~~~~~~~~~~~~~~~   73 (316)
T 2ew2_A            4 MKIAIAGAGAMGSRLGIMLHQ---GGNDVTLIDQWPAHIEAIRKN----G-L--IADFNGEEVVANLPIFSPEEIDHQNE   73 (316)
T ss_dssp             CEEEEECCSHHHHHHHHHHHH---TTCEEEEECSCHHHHHHHHHH----C-E--EEEETTEEEEECCCEECGGGCCTTSC
T ss_pred             CeEEEECcCHHHHHHHHHHHh---CCCcEEEEECCHHHHHHHHhC----C-E--EEEeCCCeeEecceeecchhhcccCC
Confidence            58999999988765333 333   678999999999877655432    4 1  1110         0001111122223


Q ss_pred             CcceeehhhhccCChhHHHHHHHHHHhhccCCcEEEEe
Q 042119          202 EYDCIFLAALVGMSKEEKLTILGHIRKYMKDGGILLVR  239 (286)
Q Consensus       202 ~fD~V~~aalvg~~~~~k~~vl~~l~~~l~pgg~lv~r  239 (286)
                      ++|+|+++.-    ...-.++++.+.+.++||..++.-
T Consensus        74 ~~d~vi~~v~----~~~~~~v~~~l~~~l~~~~~iv~~  107 (316)
T 2ew2_A           74 QVDLIIALTK----AQQLDAMFKAIQPMITEKTYVLCL  107 (316)
T ss_dssp             CCSEEEECSC----HHHHHHHHHHHGGGCCTTCEEEEC
T ss_pred             CCCEEEEEec----cccHHHHHHHHHHhcCCCCEEEEe
Confidence            7999998743    234567888999999888876654

>3l4b_C TRKA K+ channel protien TM1088B; potassium channel, ring-gating complex, structural GEN PSI-2-2, protein structure initiative; HET: AMP; 3.45A {Thermotoga maritima}

Probab=96.69  E-value=0.008  Score=51.40  Aligned_cols=95  Identities=7%  Similarity=-0.031  Sum_probs=64.9

Q ss_pred             CEEEEeccCCChhhHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEccccchh----hcCCCcceee
Q 042119          132 KKVAFVGSGPMPLTSIIMAKHHLTSTHFDNFDIDEAANDVARSIVASDAEFEGRMKFLTRDIMEVK----EQLGEYDCIF  207 (286)
Q Consensus       132 ~~VL~IG~G~lp~tai~lA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~g~l~~~i~f~~~D~~~~~----~~l~~fD~V~  207 (286)
                      ++|+.+|+|.+|........  ..|..|+.+|.|++.++...+   ..|     +.++.+|+.+..    ....++|+|+
T Consensus         1 M~iiIiG~G~~G~~la~~L~--~~g~~v~vid~~~~~~~~l~~---~~~-----~~~i~gd~~~~~~l~~a~i~~ad~vi   70 (218)
T 3l4b_C            1 MKVIIIGGETTAYYLARSML--SRKYGVVIINKDRELCEEFAK---KLK-----ATIIHGDGSHKEILRDAEVSKNDVVV   70 (218)
T ss_dssp             CCEEEECCHHHHHHHHHHHH--HTTCCEEEEESCHHHHHHHHH---HSS-----SEEEESCTTSHHHHHHHTCCTTCEEE
T ss_pred             CEEEEECCCHHHHHHHHHHH--hCCCeEEEEECCHHHHHHHHH---HcC-----CeEEEcCCCCHHHHHhcCcccCCEEE
Confidence            47999999987766444333  268999999999998765332   234     578999987632    1356799988


Q ss_pred             hhhhccCChhHHHHHHHHHHhhccCCcEEEEee
Q 042119          208 LAALVGMSKEEKLTILGHIRKYMKDGGILLVRS  240 (286)
Q Consensus       208 ~aalvg~~~~~k~~vl~~l~~~l~pgg~lv~r~  240 (286)
                      .+.-   + ......+..+.+.+.|...++.|.
T Consensus        71 ~~~~---~-d~~n~~~~~~a~~~~~~~~iia~~   99 (218)
T 3l4b_C           71 ILTP---R-DEVNLFIAQLVMKDFGVKRVVSLV   99 (218)
T ss_dssp             ECCS---C-HHHHHHHHHHHHHTSCCCEEEECC
T ss_pred             EecC---C-cHHHHHHHHHHHHHcCCCeEEEEE
Confidence            6532   1 233445666777777888888874

>3zwc_A Peroxisomal bifunctional enzyme; beta oxidation pathway, oxidoreductase, lipid metabolism, LY isomerase, peroxisome, fatty acid metabolism; HET: NAD HSC; 2.30A {Rattus norvegicus} PDB: 3zw9_A* 3zw8_A* 3zwa_A* 3zwb_A* 2x58_A*

Probab=96.68  E-value=0.0077  Score=61.66  Aligned_cols=100  Identities=17%  Similarity=0.235  Sum_probs=72.3

Q ss_pred             CEEEEeccCCChhhHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhc-----------CC--CCCCeEEEEccccchhh
Q 042119          132 KKVAFVGSGPMPLTSIIMAKHHLTSTHFDNFDIDEAANDVARSIVASD-----------AE--FEGRMKFLTRDIMEVKE  198 (286)
Q Consensus       132 ~~VL~IG~G~lp~tai~lA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~-----------g~--l~~~i~f~~~D~~~~~~  198 (286)
                      ++|..||+|.+|-.-...+  +..|..|+-+|+++++++.+++.+++.           +.  ...++++. .|    ..
T Consensus       317 ~~v~ViGaG~MG~gIA~~~--a~aG~~V~l~D~~~~~l~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~-~~----~~  389 (742)
T 3zwc_A          317 SSVGVLGLGTMGRGIAISF--ARVGISVVAVESDPKQLDAAKKIITFTLEKEASRAHQNGQASAKPKLRFS-SS----TK  389 (742)
T ss_dssp             CEEEEECCSHHHHHHHHHH--HTTTCEEEEECSSHHHHHHHHHHHHHHHHHHHHHHHTTTCCCCCCCEEEE-SC----GG
T ss_pred             cEEEEEcccHHHHHHHHHH--HhCCCchhcccchHhhhhhHHHHHHHHHHHHHHhccccchhhhhhhhccc-Cc----HH
Confidence            6999999998875433322  248999999999999999998876431           10  11233332 22    23


Q ss_pred             cCCCcceeehhhhccCChhHHHHHHHHHHhhccCCcEEEEee
Q 042119          199 QLGEYDCIFLAALVGMSKEEKLTILGHIRKYMKDGGILLVRS  240 (286)
Q Consensus       199 ~l~~fD~V~~aalvg~~~~~k~~vl~~l~~~l~pgg~lv~r~  240 (286)
                      ++.+.|+|+.+..  .+.+-|.+++.++-++++|+.+|...+
T Consensus       390 ~l~~aDlVIEAV~--E~l~iK~~vf~~le~~~~~~aIlASNT  429 (742)
T 3zwc_A          390 ELSTVDLVVEAVF--EDMNLKKKVFAELSALCKPGAFLCTNT  429 (742)
T ss_dssp             GGGSCSEEEECCC--SCHHHHHHHHHHHHHHSCTTCEEEECC
T ss_pred             HHhhCCEEEEecc--ccHHHHHHHHHHHhhcCCCCceEEecC
Confidence            4567899997643  466899999999999999999888764

>3pvc_A TRNA 5-methylaminomethyl-2-thiouridine biosynthes bifunctional protein MNMC; structural genomics, PSI-biology; HET: FAD; 2.31A {Yersinia pestis} PDB: 3sgl_A*

Probab=96.66  E-value=0.0015  Score=65.74  Aligned_cols=129  Identities=19%  Similarity=0.228  Sum_probs=83.0

Q ss_pred             cCccchhhhhHHHHHHHHhcC--------CCCCCEEEEeccCCChhhHHHHHhhc---------CC--CcEEEEEeCCh-
Q 042119          107 PYYGNYVKLSKLEYTILSENG--------VVQPKKVAFVGSGPMPLTSIIMAKHH---------LT--STHFDNFDIDE-  166 (286)
Q Consensus       107 py~~ny~~l~~~E~~~l~~~~--------~~~~~~VL~IG~G~lp~tai~lA~~~---------~~--g~~V~~iDid~-  166 (286)
                      .||.+.-.+.+.++--+...+        ..++-+|+++|-| +|+..+.+.+..         .+  ..+++.++..| 
T Consensus        27 ~y~s~~~~~~e~~~~f~~~~~l~~~~~~~~~~~~~i~e~gfG-~G~n~l~~~~~~~~~~~~~p~~~~~~l~~~s~E~~p~  105 (689)
T 3pvc_A           27 IYFSNEDGLEETHHVFLKGNGFPARFASHPQQSCIFAETGFG-TGLNFLTLWRDFALFRQQSPNATLRRLHYISFEKYPL  105 (689)
T ss_dssp             --CCSTTSHHHHHHHTTTTTTTTHHHHHCCSSEEEEEEECCT-TSHHHHHHHHHHHHHHHHCTTSSCCEEEEEEEESSCC
T ss_pred             cccCCcCHHHhhHhhccccCCHHHHHhhCCCCceEEEEecCc-hHHHHHHHHHHHHHhhhhCCCCCCceEEEEEeeCCCC
Confidence            666666666544443221111        2355799999999 689888776631         01  26799999955 


Q ss_pred             --HHHHH-----------HHHHHHhcCC---------CC---CCeEEEEccccchhhcC-----CCcceeehhhhccCCh
Q 042119          167 --AANDV-----------ARSIVASDAE---------FE---GRMKFLTRDIMEVKEQL-----GEYDCIFLAALVGMSK  216 (286)
Q Consensus       167 --~ai~~-----------Ar~~~~~~g~---------l~---~~i~f~~~D~~~~~~~l-----~~fD~V~~aalvg~~~  216 (286)
                        +-+..           ++++++....         +.   -++++..||+.+....+     ..||++|++.+-    
T Consensus       106 ~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~r~~~~~~~~~l~l~~gd~~~~l~~~~~~~~~~~da~flD~f~----  181 (689)
T 3pvc_A          106 HVADLASAHARWPELASFAEQLRAQWPLPLAGCHRILLADGAITLDLWFGDVNTLLPTLDDSLNNQVDAWFLDGFA----  181 (689)
T ss_dssp             CHHHHHHHHTTCGGGHHHHHHHHHTCCCCCSEEEEEEETTTTEEEEEEESCHHHHGGGCCGGGTTCEEEEEECSSC----
T ss_pred             CHHHHHHHHHhCcchhHHHHHHHHhCcccCCCceEEEecCCcEEEEEEccCHHHHHhhcccccCCceeEEEECCCC----
Confidence              33332           2344443320         11   26788999998877665     469999999875    


Q ss_pred             hHH------HHHHHHHHhhccCCcEEEEee
Q 042119          217 EEK------LTILGHIRKYMKDGGILLVRS  240 (286)
Q Consensus       217 ~~k------~~vl~~l~~~l~pgg~lv~r~  240 (286)
                      +.|      .+++..+.+.++|||++...+
T Consensus       182 p~~np~~w~~~~~~~l~~~~~~g~~~~t~~  211 (689)
T 3pvc_A          182 PAKNPDMWNEQLFNAMARMTRPGGTFSTFT  211 (689)
T ss_dssp             C--CCTTCSHHHHHHHHHHEEEEEEEEESC
T ss_pred             CCCChhhhhHHHHHHHHHHhCCCCEEEecc
Confidence            455      789999999999999988754

>2y0c_A BCEC, UDP-glucose dehydrogenase; oxidoreductase, carbohydrate synthesis, exopolysaccharide, C fibrosis; HET: UGA; 1.75A {Burkholderia cepacia} PDB: 2y0d_A* 2y0e_A*

Probab=96.64  E-value=0.0037  Score=60.69  Aligned_cols=104  Identities=21%  Similarity=0.313  Sum_probs=69.0

Q ss_pred             CCCCEEEEeccCCChhh-HHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHh---cCCC---------CCCeEEEEccccc
Q 042119          129 VQPKKVAFVGSGPMPLT-SIIMAKHHLTSTHFDNFDIDEAANDVARSIVAS---DAEF---------EGRMKFLTRDIME  195 (286)
Q Consensus       129 ~~~~~VL~IG~G~lp~t-ai~lA~~~~~g~~V~~iDid~~ai~~Ar~~~~~---~g~l---------~~~i~f~~~D~~~  195 (286)
                      ....+|.+||+|.+|.. +..||+   .|.+|+++|+|++.++..++-...   .| +         ..++++ +.|..+
T Consensus         6 ~~~~~I~VIG~G~vG~~lA~~la~---~G~~V~~~d~~~~~v~~l~~~~~~i~e~g-l~~~l~~~~~~~~l~~-ttd~~~   80 (478)
T 2y0c_A            6 HGSMNLTIIGSGSVGLVTGACLAD---IGHDVFCLDVDQAKIDILNNGGVPIHEPG-LKEVIARNRSAGRLRF-STDIEA   80 (478)
T ss_dssp             -CCCEEEEECCSHHHHHHHHHHHH---TTCEEEEECSCHHHHHHHHTTCCSSCCTT-HHHHHHHHHHTTCEEE-ECCHHH
T ss_pred             CCCceEEEECcCHHHHHHHHHHHh---CCCEEEEEECCHHHHHHHHCCCCCcCCCC-HHHHHHHhcccCCEEE-ECCHHH
Confidence            34689999999988875 456666   688999999999988876652100   01 0         124554 234322


Q ss_pred             hhhcCCCcceeehhhhcc------CChhHHHHHHHHHHhhccCCcEEEEee
Q 042119          196 VKEQLGEYDCIFLAALVG------MSKEEKLTILGHIRKYMKDGGILLVRS  240 (286)
Q Consensus       196 ~~~~l~~fD~V~~aalvg------~~~~~k~~vl~~l~~~l~pgg~lv~r~  240 (286)
                         .....|+||++.--.      .+......+++.+.+.++||.+++..+
T Consensus        81 ---a~~~aDvviiaVptp~~~~~~~dl~~v~~v~~~i~~~l~~~~iVV~~S  128 (478)
T 2y0c_A           81 ---AVAHGDVQFIAVGTPPDEDGSADLQYVLAAARNIGRYMTGFKVIVDKS  128 (478)
T ss_dssp             ---HHHHCSEEEECCCCCBCTTSSBCCHHHHHHHHHHHHHCCSCEEEEECS
T ss_pred             ---HhhcCCEEEEEeCCCcccCCCccHHHHHHHHHHHHHhcCCCCEEEEeC
Confidence               234679999774210      022567789999999999999887765

>1lld_A L-lactate dehydrogenase; oxidoreductase(CHOH (D)-NAD (A)); HET: NAD; 2.00A {Bifidobacterium longum subsp} SCOP: c.2.1.5 d.162.1.1 PDB: 1lth_T*

Probab=96.63  E-value=0.015  Score=52.60  Aligned_cols=103  Identities=19%  Similarity=0.209  Sum_probs=60.3

Q ss_pred             CCCCEEEEeccCCChhhHHHHHhhcCCCc--EEEEEeCChHHHH-HHHHHHHhcCCCCCCeEEEEc-cccchhhcCCCcc
Q 042119          129 VQPKKVAFVGSGPMPLTSIIMAKHHLTST--HFDNFDIDEAAND-VARSIVASDAEFEGRMKFLTR-DIMEVKEQLGEYD  204 (286)
Q Consensus       129 ~~~~~VL~IG~G~lp~tai~lA~~~~~g~--~V~~iDid~~ai~-~Ar~~~~~~g~l~~~i~f~~~-D~~~~~~~l~~fD  204 (286)
                      +.+++|+.||+|.+|.+......  ..|.  +|+.+|++++.++ .+.++.+... +....++... |.    ..+.++|
T Consensus         5 ~~~mkI~IiGaG~vG~~~a~~l~--~~g~~~~V~l~d~~~~~~~~~~~~~~~~~~-~~~~~~v~~~~~~----~~~~~aD   77 (319)
T 1lld_A            5 VKPTKLAVIGAGAVGSTLAFAAA--QRGIAREIVLEDIAKERVEAEVLDMQHGSS-FYPTVSIDGSDDP----EICRDAD   77 (319)
T ss_dssp             --CCEEEEECCSHHHHHHHHHHH--HTTCCSEEEEECSSHHHHHHHHHHHHHTGG-GSTTCEEEEESCG----GGGTTCS
T ss_pred             CCCCEEEEECCCHHHHHHHHHHH--hCCCCCEEEEEeCChhHHHHHHHHHHhhhh-hcCCeEEEeCCCH----HHhCCCC
Confidence            34579999999998876544332  1455  8999999987765 2333222222 1123444433 32    2346799


Q ss_pred             eeehhhhc----cCCh--------hHHHHHHHHHHhhccCCcEEEEe
Q 042119          205 CIFLAALV----GMSK--------EEKLTILGHIRKYMKDGGILLVR  239 (286)
Q Consensus       205 ~V~~aalv----g~~~--------~~k~~vl~~l~~~l~pgg~lv~r  239 (286)
                      +|+++.-.    |++.        +...++++.+.+. .|++.++.-
T Consensus        78 ~Vii~v~~~~~~g~~r~~~~~~n~~~~~~~~~~i~~~-~~~~~vi~~  123 (319)
T 1lld_A           78 MVVITAGPRQKPGQSRLELVGATVNILKAIMPNLVKV-APNAIYMLI  123 (319)
T ss_dssp             EEEECCCCCCCTTCCHHHHHHHHHHHHHHHHHHHHHH-CTTSEEEEC
T ss_pred             EEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHh-CCCceEEEe
Confidence            99987632    1111        1233677777775 788877653

>3p8z_A Mtase, non-structural protein 5; methyltransferase, RNA, ER, transferase-transferase inhibito; HET: 36A SAH; 1.70A {Dengue virus 3} SCOP: c.66.1.25 PDB: 3p97_A* 2xbm_A* 3evg_A*

Probab=96.62  E-value=0.016  Score=51.58  Aligned_cols=109  Identities=11%  Similarity=0.161  Sum_probs=70.5

Q ss_pred             HhcCCCCCCEEEEeccCCChhhHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEc-cccchhhcCCC
Q 042119          124 SENGVVQPKKVAFVGSGPMPLTSIIMAKHHLTSTHFDNFDIDEAANDVARSIVASDAEFEGRMKFLTR-DIMEVKEQLGE  202 (286)
Q Consensus       124 ~~~~~~~~~~VL~IG~G~lp~tai~lA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~g~l~~~i~f~~~-D~~~~~~~l~~  202 (286)
                      .++.+.++.+|+|+||+|+|.|-.+..+  ....+|.++|+-+.--+.= .+++..|-  ..|+|..+ |+..++.  ..
T Consensus        72 ek~~l~~g~~VvDLGaapGGWSq~~a~~--~g~~~V~avdvG~~ghe~P-~~~~s~gw--n~v~fk~gvDv~~~~~--~~  144 (267)
T 3p8z_A           72 ERNMVIPEGRVIDLGCGRGGWSYYCAGL--KKVTEVRGYTKGGPGHEEP-VPMSTYGW--NIVKLMSGKDVFYLPP--EK  144 (267)
T ss_dssp             HTTSSCCCEEEEEESCTTSHHHHHHHTS--TTEEEEEEECCCSTTSCCC-CCCCCTTT--TSEEEECSCCGGGCCC--CC
T ss_pred             HhcCCCCCCEEEEcCCCCCcHHHHHHHh--cCCCEEEEEecCCCCccCc-chhhhcCc--CceEEEeccceeecCC--cc
Confidence            4556788999999999999998655544  2334699999975432100 01233442  67999999 9865444  56


Q ss_pred             cceeehhhhc--cCChhHH---HHHHHHHHhhccCCcEEEEee
Q 042119          203 YDCIFLAALV--GMSKEEK---LTILGHIRKYMKDGGILLVRS  240 (286)
Q Consensus       203 fD~V~~aalv--g~~~~~k---~~vl~~l~~~l~pgg~lv~r~  240 (286)
                      ||.|+.+..=  +-+.-+.   .++|+-+.+.|++ |-+++.-
T Consensus       145 ~DtllcDIgeSs~~~~vE~~RtlrvLela~~wL~~-~~fc~KV  186 (267)
T 3p8z_A          145 CDTLLCDIGESSPSPTVEESRTIRVLKMVEPWLKN-NQFCIKV  186 (267)
T ss_dssp             CSEEEECCCCCCSCHHHHHHHHHHHHHHHGGGCSS-CEEEEEE
T ss_pred             ccEEEEecCCCCCChhhhhhHHHHHHHHHHHhccc-CCEEEEE
Confidence            9999866321  1111122   3477777889998 6666653

>3vyw_A MNMC2; tRNA wobble uridine, modification enzyme, genetic CODE, 5- methylaminomethyl-2-thiouridine, methyltransferase; HET: SAM; 2.49A {Aquifex aeolicus} PDB: 2e58_A*

Probab=96.62  E-value=0.0035  Score=57.71  Aligned_cols=114  Identities=16%  Similarity=0.207  Sum_probs=72.0

Q ss_pred             CCCCEEEEeccCCChhhHHHHHh---hcCCCc--EEEEEeCCh---------HHHHHHHHHHHhcCCC-CC--CeEEEEc
Q 042119          129 VQPKKVAFVGSGPMPLTSIIMAK---HHLTST--HFDNFDIDE---------AANDVARSIVASDAEF-EG--RMKFLTR  191 (286)
Q Consensus       129 ~~~~~VL~IG~G~lp~tai~lA~---~~~~g~--~V~~iDid~---------~ai~~Ar~~~~~~g~l-~~--~i~f~~~  191 (286)
                      .+.-+||++|-| .|+.++...+   +..+..  +++.+|.+|         ..-+..+.+....+.. ..  ..++..|
T Consensus        95 ~~~~~IlE~GFG-TGLNfl~t~~~~~~~~~~~~L~~iS~Ek~pl~~~~~~~~~~~~l~~~l~~~~p~~~~~~v~L~l~~G  173 (308)
T 3vyw_A           95 RKVIRILDVGFG-LGYNLAVALKHLWEVNPKLRVEIISFEKELLKEFPILPEPYREIHEFLLERVPEYEGERLSLKVLLG  173 (308)
T ss_dssp             CSEEEEEEECCT-TSHHHHHHHHHHHHHCTTCEEEEEEEESSCCSCCCCCCTTSHHHHHHHHHHCSEEECSSEEEEEEES
T ss_pred             CCCcEEEEeCCC-ccHHHHHHHHHHHHhCCCcceEEEeecHHHHHhhHhchHhHHHHHHHHHHhCccccCCcEEEEEEec
Confidence            344689999999 5886543221   123554  456666532         1234455555443200 12  3467889


Q ss_pred             cccchhhcCC--CcceeehhhhccC-ChhH-HHHHHHHHHhhccCCcEEEEeecCc
Q 042119          192 DIMEVKEQLG--EYDCIFLAALVGM-SKEE-KLTILGHIRKYMKDGGILLVRSAKG  243 (286)
Q Consensus       192 D~~~~~~~l~--~fD~V~~aalvg~-~~~~-k~~vl~~l~~~l~pgg~lv~r~~~g  243 (286)
                      |+.+....+.  .||++|++++-.- .++. -.++++.|++.++|||+++.=++.|
T Consensus       174 Da~~~l~~l~~~~~Da~flDgFsP~kNPeLWs~e~f~~l~~~~~pgg~laTYtaag  229 (308)
T 3vyw_A          174 DARKRIKEVENFKADAVFHDAFSPYKNPELWTLDFLSLIKERIDEKGYWVSYSSSL  229 (308)
T ss_dssp             CHHHHGGGCCSCCEEEEEECCSCTTTSGGGGSHHHHHHHHTTEEEEEEEEESCCCH
T ss_pred             hHHHHHhhhcccceeEEEeCCCCcccCcccCCHHHHHHHHHHhCCCcEEEEEeCcH
Confidence            9988776664  5899999987411 1111 1579999999999999999866554

>3c24_A Putative oxidoreductase; YP_511008.1, structural genomics, center for structural genomics, JCSG, protein structure INI PSI-2; HET: MSE; 1.62A {Jannaschia SP}

Probab=96.62  E-value=0.0062  Score=54.41  Aligned_cols=86  Identities=21%  Similarity=0.278  Sum_probs=59.3

Q ss_pred             CEEEEecc-CCChhhHHH-HHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEccccchhhcCCCcceeehh
Q 042119          132 KKVAFVGS-GPMPLTSII-MAKHHLTSTHFDNFDIDEAANDVARSIVASDAEFEGRMKFLTRDIMEVKEQLGEYDCIFLA  209 (286)
Q Consensus       132 ~~VL~IG~-G~lp~tai~-lA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~g~l~~~i~f~~~D~~~~~~~l~~fD~V~~a  209 (286)
                      ++|.+||+ |.+|..... |++   .|.+|+++|++++..+..++    .| .  +.    .+.   .....+.|+|+++
T Consensus        12 m~I~iIG~tG~mG~~la~~l~~---~g~~V~~~~r~~~~~~~~~~----~g-~--~~----~~~---~~~~~~aDvVi~a   74 (286)
T 3c24_A           12 KTVAILGAGGKMGARITRKIHD---SAHHLAAIEIAPEGRDRLQG----MG-I--PL----TDG---DGWIDEADVVVLA   74 (286)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHH---SSSEEEEECCSHHHHHHHHH----TT-C--CC----CCS---SGGGGTCSEEEEC
T ss_pred             CEEEEECCCCHHHHHHHHHHHh---CCCEEEEEECCHHHHHHHHh----cC-C--Cc----CCH---HHHhcCCCEEEEc
Confidence            58999999 988765433 333   67899999999988776554    45 2  11    132   2233578999987


Q ss_pred             hhccCChhHHHHHHHHHHhhccCCcEEEE
Q 042119          210 ALVGMSKEEKLTILGHIRKYMKDGGILLV  238 (286)
Q Consensus       210 alvg~~~~~k~~vl~~l~~~l~pgg~lv~  238 (286)
                      .-.    ..-.++++.+.+.++||.+++-
T Consensus        75 v~~----~~~~~v~~~l~~~l~~~~ivv~   99 (286)
T 3c24_A           75 LPD----NIIEKVAEDIVPRVRPGTIVLI   99 (286)
T ss_dssp             SCH----HHHHHHHHHHGGGSCTTCEEEE
T ss_pred             CCc----hHHHHHHHHHHHhCCCCCEEEE
Confidence            432    3456788888888888887665

>1ez4_A Lactate dehydrogenase; rossmann fold, oxidoreductase; HET: NAD; 2.30A {Lactobacillus pentosus} SCOP: c.2.1.5 d.162.1.1

Probab=96.59  E-value=0.01  Score=54.63  Aligned_cols=106  Identities=21%  Similarity=0.244  Sum_probs=66.9

Q ss_pred             CCCEEEEeccCCChhhHHHHHhhcCCCcEEEEEeCChHHHH-HHHHHHHhcCCCCCCeEEEEccccchhhcCCCcceeeh
Q 042119          130 QPKKVAFVGSGPMPLTSIIMAKHHLTSTHFDNFDIDEAAND-VARSIVASDAEFEGRMKFLTRDIMEVKEQLGEYDCIFL  208 (286)
Q Consensus       130 ~~~~VL~IG~G~lp~tai~lA~~~~~g~~V~~iDid~~ai~-~Ar~~~~~~g~l~~~i~f~~~D~~~~~~~l~~fD~V~~  208 (286)
                      +..+|..||+|..|.+............+++-+|++++.++ .+..+.+... +..++++..++    ..++.+.|+|++
T Consensus         4 ~~~KI~IiGaG~vG~~~a~~l~~~~~~~el~L~Di~~~~~~g~~~dl~~~~~-~~~~~~v~~~~----~~a~~~aDvVii   78 (318)
T 1ez4_A            4 NHQKVVLVGDGAVGSSYAFAMAQQGIAEEFVIVDVVKDRTKGDALDLEDAQA-FTAPKKIYSGE----YSDCKDADLVVI   78 (318)
T ss_dssp             TBCEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSSHHHHHHHHHHHHGGGG-GSCCCEEEECC----GGGGTTCSEEEE
T ss_pred             CCCEEEEECCCHHHHHHHHHHHcCCCCCEEEEEeCCchHHHHHHHHHHHHHH-hcCCeEEEECC----HHHhCCCCEEEE
Confidence            45799999999999887665543222358999999998777 3666655543 33567776533    234578999998


Q ss_pred             hhhccCCh----h----HHHHHHHHHHhhc---cCCcEEEEee
Q 042119          209 AALVGMSK----E----EKLTILGHIRKYM---KDGGILLVRS  240 (286)
Q Consensus       209 aalvg~~~----~----~k~~vl~~l~~~l---~pgg~lv~r~  240 (286)
                      ++.+....    .    .-..++..+.+.+   .|+|.+++-+
T Consensus        79 ~ag~~~~~g~~R~dl~~~n~~i~~~i~~~i~~~~p~a~iiv~t  121 (318)
T 1ez4_A           79 TAGAPQKPGESRLDLVNKNLNILSSIVKPVVDSGFDGIFLVAA  121 (318)
T ss_dssp             CCCC----------CHHHHHHHHHHHHHHHHHTTCCSEEEECS
T ss_pred             CCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEeC
Confidence            87542111    0    0113444444432   7999988853

>3g79_A NDP-N-acetyl-D-galactosaminuronic acid dehydrogen; structural genomics, protein structure initiative; 2.40A {Methanosarcina mazei GO1}

Probab=96.59  E-value=0.0071  Score=58.86  Aligned_cols=104  Identities=16%  Similarity=0.289  Sum_probs=67.4

Q ss_pred             CCCCEEEEeccCCChhhH-HHHHhhcCCCc-EEEEEeCChH----HHHHHHH--------------HHHhcCCCCCCeEE
Q 042119          129 VQPKKVAFVGSGPMPLTS-IIMAKHHLTST-HFDNFDIDEA----ANDVARS--------------IVASDAEFEGRMKF  188 (286)
Q Consensus       129 ~~~~~VL~IG~G~lp~ta-i~lA~~~~~g~-~V~~iDid~~----ai~~Ar~--------------~~~~~g~l~~~i~f  188 (286)
                      .+-++|.+||.|.+|... ..||+  .+|. +|+++|++++    .++.-++              ++++.- ...++++
T Consensus        16 ~~~mkIaVIGlG~mG~~lA~~la~--~~G~~~V~~~D~~~~~~~~kv~~l~~g~~~i~~~e~gl~~l~~~~~-~~g~l~~   92 (478)
T 3g79_A           16 GPIKKIGVLGMGYVGIPAAVLFAD--APCFEKVLGFQRNSKSSGYKIEMLNRGESPLKGEEPGLEELIGKVV-KAGKFEC   92 (478)
T ss_dssp             CSCCEEEEECCSTTHHHHHHHHHH--STTCCEEEEECCCCTTTTTHHHHHTTTCCCSSCCGGGHHHHHHHHH-HTTCEEE
T ss_pred             CCCCEEEEECcCHHHHHHHHHHHH--hCCCCeEEEEECChhHhHHHHHHHHhcCCCccccCCCHHHHHHhhc-ccCCeEE
Confidence            345799999999999864 45665  1388 9999999999    6655443              111100 0135655


Q ss_pred             EEccccchhhcCCCcceeehhhhcc--------CChhHHHHHHHHHHhhccCCcEEEEee
Q 042119          189 LTRDIMEVKEQLGEYDCIFLAALVG--------MSKEEKLTILGHIRKYMKDGGILLVRS  240 (286)
Q Consensus       189 ~~~D~~~~~~~l~~fD~V~~aalvg--------~~~~~k~~vl~~l~~~l~pgg~lv~r~  240 (286)
                      . .| .+   ...+.|+||++.--.        .+.+.-..+.+.+.+.++||.+++..+
T Consensus        93 t-td-~e---a~~~aDvViiaVptp~~~~~~~~~dl~~v~~~~~~i~~~l~~g~iVV~~S  147 (478)
T 3g79_A           93 T-PD-FS---RISELDAVTLAIQTPFANPKDLEPDFSALIDGIRNVGKYLKPGMLVVLES  147 (478)
T ss_dssp             E-SC-GG---GGGGCSEEEECCCCCCCSSCCSSCCCHHHHHHHHHHHHHCCTTCEEEECS
T ss_pred             e-Cc-HH---HHhcCCEEEEecCCchhccCCccccHHHHHHHHHHHHhhcCCCcEEEEeC
Confidence            3 34 22   334689999874321        122234567889999999999888876

>4a7p_A UDP-glucose dehydrogenase; oxidoreductase, carbohydrate synthesis, exopolysaccharide; HET: NAD; 3.40A {Sphingomonas elodea}

Probab=96.59  E-value=0.0029  Score=61.09  Aligned_cols=103  Identities=19%  Similarity=0.302  Sum_probs=68.3

Q ss_pred             CCCEEEEeccCCChhh-HHHHHhhcCCCcEEEEEeCChHHHHHHHHH------------HHhcCCCCCCeEEEEccccch
Q 042119          130 QPKKVAFVGSGPMPLT-SIIMAKHHLTSTHFDNFDIDEAANDVARSI------------VASDAEFEGRMKFLTRDIMEV  196 (286)
Q Consensus       130 ~~~~VL~IG~G~lp~t-ai~lA~~~~~g~~V~~iDid~~ai~~Ar~~------------~~~~g~l~~~i~f~~~D~~~~  196 (286)
                      ..-||.+||.|-+|+. |..||+   .|.+|+++|+|++.++.-++-            +++.- ...++++ +.|..+ 
T Consensus         7 ~~~~~~vIGlG~vG~~~A~~La~---~G~~V~~~D~~~~kv~~l~~g~~~~~epgl~~~~~~~~-~~g~l~~-ttd~~e-   80 (446)
T 4a7p_A            7 GSVRIAMIGTGYVGLVSGACFSD---FGHEVVCVDKDARKIELLHQNVMPIYEPGLDALVASNV-KAGRLSF-TTDLAE-   80 (446)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHH---TTCEEEEECSCSTTHHHHTTTCCSSCCTTHHHHHHHHH-HTTCEEE-ESCHHH-
T ss_pred             CceEEEEEcCCHHHHHHHHHHHH---CCCEEEEEeCCHHHHHHHhcCCCCccCCCHHHHHHhhc-ccCCEEE-ECCHHH-
Confidence            3469999999988876 455666   689999999999987765541            11100 0134555 344322 


Q ss_pred             hhcCCCcceeehhhhccC-------ChhHHHHHHHHHHhhccCCcEEEEee
Q 042119          197 KEQLGEYDCIFLAALVGM-------SKEEKLTILGHIRKYMKDGGILLVRS  240 (286)
Q Consensus       197 ~~~l~~fD~V~~aalvg~-------~~~~k~~vl~~l~~~l~pgg~lv~r~  240 (286)
                        ...+.|+||++.-...       +...-..+++.+.+.+++|.+++..+
T Consensus        81 --a~~~aDvvii~Vptp~~~~~~~~Dl~~v~~v~~~i~~~l~~g~iVV~~S  129 (446)
T 4a7p_A           81 --GVKDADAVFIAVGTPSRRGDGHADLSYVFAAAREIAENLTKPSVIVTKS  129 (446)
T ss_dssp             --HHTTCSEEEECCCCCBCTTTCCBCTHHHHHHHHHHHHSCCSCCEEEECS
T ss_pred             --HHhcCCEEEEEcCCCCccccCCccHHHHHHHHHHHHHhcCCCCEEEEeC
Confidence              3357899998732211       11135678899999999999998876

>3d0o_A L-LDH 1, L-lactate dehydrogenase 1; cytoplasm, glycolysis, NAD, oxidoreductase, phosphoprotein; 1.80A {Staphylococcus aureus} PDB: 3d4p_A* 3h3j_A*

Probab=96.56  E-value=0.019  Score=52.60  Aligned_cols=106  Identities=14%  Similarity=0.174  Sum_probs=65.7

Q ss_pred             CCCEEEEeccCCChhhHHHHHhhcCCCcEEEEEeCChHHHHH-HHHHHHhcCCCCCCeEEEEccccchhhcCCCcceeeh
Q 042119          130 QPKKVAFVGSGPMPLTSIIMAKHHLTSTHFDNFDIDEAANDV-ARSIVASDAEFEGRMKFLTRDIMEVKEQLGEYDCIFL  208 (286)
Q Consensus       130 ~~~~VL~IG~G~lp~tai~lA~~~~~g~~V~~iDid~~ai~~-Ar~~~~~~g~l~~~i~f~~~D~~~~~~~l~~fD~V~~  208 (286)
                      .+.+|..||+|..|.+............+++.+|++++.++- +..+......+..++++..++    ..++.+.|+|++
T Consensus         5 ~~~KI~IIGaG~vG~~la~~l~~~~~~~ei~L~Di~~~~~~g~~~dl~~~~~~~~~~~~v~~~~----~~a~~~aDvVvi   80 (317)
T 3d0o_A            5 KGNKVVLIGNGAVGSSYAFSLVNQSIVDELVIIDLDTEKVRGDVMDLKHATPYSPTTVRVKAGE----YSDCHDADLVVI   80 (317)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHHHCSCSEEEEECSCHHHHHHHHHHHHHHGGGSSSCCEEEECC----GGGGTTCSEEEE
T ss_pred             CCCEEEEECCCHHHHHHHHHHHhCCCCCEEEEEeCChhHhhhhhhhHHhhhhhcCCCeEEEeCC----HHHhCCCCEEEE
Confidence            457999999999888766544421223589999999987663 555444333122466666533    234578999998


Q ss_pred             hhhccC----Ch--------hHHHHHHHHHHhhccCCcEEEEee
Q 042119          209 AALVGM----SK--------EEKLTILGHIRKYMKDGGILLVRS  240 (286)
Q Consensus       209 aalvg~----~~--------~~k~~vl~~l~~~l~pgg~lv~r~  240 (286)
                      ++.++.    +.        +.-.++.+.+.+. .|++.+++-+
T Consensus        81 ~ag~~~~~g~~r~dl~~~n~~i~~~i~~~i~~~-~p~a~viv~t  123 (317)
T 3d0o_A           81 CAGAAQKPGETRLDLVSKNLKIFKSIVGEVMAS-KFDGIFLVAT  123 (317)
T ss_dssp             CCCCCCCTTCCHHHHHHHHHHHHHHHHHHHHHT-TCCSEEEECS
T ss_pred             CCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHHh-CCCcEEEEec
Confidence            875422    11        1112344444445 8999988853

>2zqz_A L-LDH, L-lactate dehydrogenase; oxidoreductase, rossmann fold, cytoplasm, glycolysis, NAD, phosphoprotein; 2.50A {Lactobacillus casei} PDB: 2zqy_A 3vkv_A* 1llc_A*

Probab=96.56  E-value=0.009  Score=55.17  Aligned_cols=108  Identities=19%  Similarity=0.172  Sum_probs=67.5

Q ss_pred             CCCCCEEEEeccCCChhhHHHHHhhcCCCcEEEEEeCChHHHHH-HHHHHHhcCCCCCCeEEEEccccchhhcCCCccee
Q 042119          128 VVQPKKVAFVGSGPMPLTSIIMAKHHLTSTHFDNFDIDEAANDV-ARSIVASDAEFEGRMKFLTRDIMEVKEQLGEYDCI  206 (286)
Q Consensus       128 ~~~~~~VL~IG~G~lp~tai~lA~~~~~g~~V~~iDid~~ai~~-Ar~~~~~~g~l~~~i~f~~~D~~~~~~~l~~fD~V  206 (286)
                      .++..||..||+|..|.+...+........+++-+|++++.++- +..+.+... +..++++..++    ..++.+.|+|
T Consensus         6 ~~~~~KI~IiGaG~vG~~la~~l~~~~~~~el~L~Di~~~~~~g~~~dl~~~~~-~~~~~~i~~~~----~~a~~~aDvV   80 (326)
T 2zqz_A            6 DKDHQKVILVGDGAVGSSYAYAMVLQGIAQEIGIVDIFKDKTKGDAIDLSNALP-FTSPKKIYSAE----YSDAKDADLV   80 (326)
T ss_dssp             CCCCCEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSCHHHHHHHHHHHHTTGG-GSCCCEEEECC----GGGGGGCSEE
T ss_pred             cCCCCEEEEECCCHHHHHHHHHHHcCCCCCEEEEEeCCchHhHHHHHHHHHHHH-hcCCeEEEECC----HHHhCCCCEE
Confidence            35668999999999998876655422223589999999987754 555555443 33567776543    2345678999


Q ss_pred             ehhhhcc----CChhHH----HHHHHHHHhhc---cCCcEEEEee
Q 042119          207 FLAALVG----MSKEEK----LTILGHIRKYM---KDGGILLVRS  240 (286)
Q Consensus       207 ~~aalvg----~~~~~k----~~vl~~l~~~l---~pgg~lv~r~  240 (286)
                      ++.+.+.    |+..+.    ..++..+.+.+   .|+|.+++-+
T Consensus        81 ii~ag~~~k~g~~R~dl~~~n~~i~~~i~~~i~~~~p~a~iiv~t  125 (326)
T 2zqz_A           81 VITAGAPQKPGETRLDLVNKNLKILKSIVDPIVDSGFNGIFLVAA  125 (326)
T ss_dssp             EECCCCC-----CHHHHHHHHHHHHHHHHHHHHHHTCCSEEEECS
T ss_pred             EEcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEeC
Confidence            9887542    211111    13444444332   7999988853

>2wtb_A MFP2, fatty acid multifunctional protein (ATMFP2); oxidoreductase, peroxisomes, beta-oxidation, fatty acid oxidation; 2.50A {Arabidopsis thaliana}

Probab=96.54  E-value=0.0074  Score=61.60  Aligned_cols=98  Identities=20%  Similarity=0.189  Sum_probs=67.7

Q ss_pred             CEEEEeccCCChhhHH-HHHhhcCCCcEEEEEeCChHHHHHHHHHHHhc-------CC--------CCCCeEEEEccccc
Q 042119          132 KKVAFVGSGPMPLTSI-IMAKHHLTSTHFDNFDIDEAANDVARSIVASD-------AE--------FEGRMKFLTRDIME  195 (286)
Q Consensus       132 ~~VL~IG~G~lp~tai-~lA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~-------g~--------l~~~i~f~~~D~~~  195 (286)
                      ++|.+||+|.+|.+-. .+++   .|.+|+.+|++++.++.+++.++..       |.        ...++++. .|.  
T Consensus       313 ~kV~VIGaG~MG~~iA~~la~---aG~~V~l~D~~~~~~~~~~~~i~~~l~~~~~~G~~~~~~~~~~~~~i~~~-~d~--  386 (725)
T 2wtb_A          313 KKVAIIGGGLMGSGIATALIL---SNYPVILKEVNEKFLEAGIGRVKANLQSRVRKGSMSQEKFEKTMSLLKGS-LDY--  386 (725)
T ss_dssp             CCEEEECCSHHHHHHHHHHHT---TTCCEEEECSSHHHHHHHHHHHHHHHHHTTC----CTTHHHHTTTSEEEE-SSS--
T ss_pred             cEEEEEcCCHhhHHHHHHHHh---CCCEEEEEECCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHhcceEEe-CCH--
Confidence            5799999999886533 3444   6889999999999998876543221       10        01245543 333  


Q ss_pred             hhhcCCCcceeehhhhccCChhHHHHHHHHHHhhccCCcEEEEe
Q 042119          196 VKEQLGEYDCIFLAALVGMSKEEKLTILGHIRKYMKDGGILLVR  239 (286)
Q Consensus       196 ~~~~l~~fD~V~~aalvg~~~~~k~~vl~~l~~~l~pgg~lv~r  239 (286)
                        ..+.+.|+|+.+..  .+.+-|..++.++.+.++||.+++..
T Consensus       387 --~~~~~aDlVIeaVp--e~~~vk~~v~~~l~~~~~~~~Ilasn  426 (725)
T 2wtb_A          387 --ESFRDVDMVIEAVI--ENISLKQQIFADLEKYCPQHCILASN  426 (725)
T ss_dssp             --GGGTTCSEEEECCC--SCHHHHHHHHHHHHHHSCTTCEEEEC
T ss_pred             --HHHCCCCEEEEcCc--CCHHHHHHHHHHHHhhCCCCcEEEeC
Confidence              24567899998743  24456889999999999999877554

>3b1f_A Putative prephenate dehydrogenase; enzyme, 4-hydroxyphenylpyruvate, oxidative decarboxylation pathway, tyrosine biosynthesis, oxidoreduct; HET: NAD; 2.10A {Streptococcus mutans} PDB: 3dzb_A

Probab=96.53  E-value=0.0067  Score=54.08  Aligned_cols=92  Identities=14%  Similarity=0.205  Sum_probs=60.5

Q ss_pred             CCEEEEeccCCChhhHHH-HHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEccccchhhcCCCcceeehh
Q 042119          131 PKKVAFVGSGPMPLTSII-MAKHHLTSTHFDNFDIDEAANDVARSIVASDAEFEGRMKFLTRDIMEVKEQLGEYDCIFLA  209 (286)
Q Consensus       131 ~~~VL~IG~G~lp~tai~-lA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~g~l~~~i~f~~~D~~~~~~~l~~fD~V~~a  209 (286)
                      .++|.+||+|.+|.+... +++ ...+.+|+++|++++..+.+++    .| ...   ..+.|..+   ...+.|+|+++
T Consensus         6 ~~~I~iIG~G~mG~~~a~~l~~-~g~~~~V~~~d~~~~~~~~~~~----~g-~~~---~~~~~~~~---~~~~aDvVila   73 (290)
T 3b1f_A            6 EKTIYIAGLGLIGASLALGIKR-DHPHYKIVGYNRSDRSRDIALE----RG-IVD---EATADFKV---FAALADVIILA   73 (290)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHH-HCTTSEEEEECSSHHHHHHHHH----TT-SCS---EEESCTTT---TGGGCSEEEEC
T ss_pred             cceEEEEeeCHHHHHHHHHHHh-CCCCcEEEEEcCCHHHHHHHHH----cC-Ccc---cccCCHHH---hhcCCCEEEEc
Confidence            368999999988876433 333 2337899999999988776543    46 211   12233322   23468999987


Q ss_pred             hhccCChhHHHHHHHHHHhh-ccCCcEEEE
Q 042119          210 ALVGMSKEEKLTILGHIRKY-MKDGGILLV  238 (286)
Q Consensus       210 alvg~~~~~k~~vl~~l~~~-l~pgg~lv~  238 (286)
                      .-.    ..-.++++.+.+. ++||.+++.
T Consensus        74 vp~----~~~~~v~~~l~~~~l~~~~ivi~   99 (290)
T 3b1f_A           74 VPI----KKTIDFIKILADLDLKEDVIITD   99 (290)
T ss_dssp             SCH----HHHHHHHHHHHTSCCCTTCEEEC
T ss_pred             CCH----HHHHHHHHHHHhcCCCCCCEEEE
Confidence            432    3336788888888 888887764

>4e21_A 6-phosphogluconate dehydrogenase (decarboxylating; structural genomics, PSI-biology, NEW YORK structural genomi research consortium; 2.30A {Geobacter metallireducens}

Probab=96.53  E-value=0.0045  Score=57.90  Aligned_cols=94  Identities=15%  Similarity=0.181  Sum_probs=63.8

Q ss_pred             CCCEEEEeccCCChhhH-HHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEccccchhhcCCCcceeeh
Q 042119          130 QPKKVAFVGSGPMPLTS-IIMAKHHLTSTHFDNFDIDEAANDVARSIVASDAEFEGRMKFLTRDIMEVKEQLGEYDCIFL  208 (286)
Q Consensus       130 ~~~~VL~IG~G~lp~ta-i~lA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~g~l~~~i~f~~~D~~~~~~~l~~fD~V~~  208 (286)
                      ..++|.+||+|.+|... ..|++   .|.+|+++|++++.++...+    .|.     . .+.|..++.......|+||+
T Consensus        21 ~~mkIgiIGlG~mG~~~A~~L~~---~G~~V~v~dr~~~~~~~l~~----~g~-----~-~~~s~~e~~~~a~~~DvVi~   87 (358)
T 4e21_A           21 QSMQIGMIGLGRMGADMVRRLRK---GGHECVVYDLNVNAVQALER----EGI-----A-GARSIEEFCAKLVKPRVVWL   87 (358)
T ss_dssp             -CCEEEEECCSHHHHHHHHHHHH---TTCEEEEECSCHHHHHHHHT----TTC-----B-CCSSHHHHHHHSCSSCEEEE
T ss_pred             cCCEEEEECchHHHHHHHHHHHh---CCCEEEEEeCCHHHHHHHHH----CCC-----E-EeCCHHHHHhcCCCCCEEEE
Confidence            35799999999888753 33444   68999999999988765443    351     1 12444444444445699997


Q ss_pred             hhhccCChhHHHHHHHHHHhhccCCcEEEEee
Q 042119          209 AALVGMSKEEKLTILGHIRKYMKDGGILLVRS  240 (286)
Q Consensus       209 aalvg~~~~~k~~vl~~l~~~l~pgg~lv~r~  240 (286)
                      +.--    ..-..+++.+.+.++||.+|+--+
T Consensus        88 ~vp~----~~v~~vl~~l~~~l~~g~iiId~s  115 (358)
T 4e21_A           88 MVPA----AVVDSMLQRMTPLLAANDIVIDGG  115 (358)
T ss_dssp             CSCG----GGHHHHHHHHGGGCCTTCEEEECS
T ss_pred             eCCH----HHHHHHHHHHHhhCCCCCEEEeCC
Confidence            6432    245578899999999988877643

>1y6j_A L-lactate dehydrogenase; southeast collaboratory for structural genomics, secsg, protein struc initiative, PSI, oxidoreductase; 3.01A {Clostridium thermocellum} SCOP: c.2.1.5 d.162.1.1

Probab=96.52  E-value=0.0046  Score=56.83  Aligned_cols=106  Identities=22%  Similarity=0.267  Sum_probs=62.5

Q ss_pred             CCCCEEEEeccCCChhhHHHHHhhcCCCcEEEEEeCChHHHHH-HHHHHHhcCCCCCCeEEEEccccchhhcCCCcceee
Q 042119          129 VQPKKVAFVGSGPMPLTSIIMAKHHLTSTHFDNFDIDEAANDV-ARSIVASDAEFEGRMKFLTRDIMEVKEQLGEYDCIF  207 (286)
Q Consensus       129 ~~~~~VL~IG~G~lp~tai~lA~~~~~g~~V~~iDid~~ai~~-Ar~~~~~~g~l~~~i~f~~~D~~~~~~~l~~fD~V~  207 (286)
                      +.+.+|..||+|..|.+............+|+.+|++++.++- +..+.+... +..++++..+|    ..++.+.|+|+
T Consensus         5 ~~~~KI~IiGaG~vG~~~a~~l~~~~~~~ev~L~Di~~~~~~g~~~dl~~~~~-~~~~~~i~~~~----~~a~~~aDvVi   79 (318)
T 1y6j_A            5 KSRSKVAIIGAGFVGASAAFTMALRQTANELVLIDVFKEKAIGEAMDINHGLP-FMGQMSLYAGD----YSDVKDCDVIV   79 (318)
T ss_dssp             --CCCEEEECCSHHHHHHHHHHHHTTCSSEEEEECCC---CCHHHHHHTTSCC-CTTCEEEC--C----GGGGTTCSEEE
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHhCCCCCEEEEEeCChHHHHHHHHHHHHhHH-hcCCeEEEECC----HHHhCCCCEEE
Confidence            3468999999999998876655422223489999999876652 444433332 23466666433    23467899999


Q ss_pred             hhhhcc----CChhH--------HHHHHHHHHhhccCCcEEEEee
Q 042119          208 LAALVG----MSKEE--------KLTILGHIRKYMKDGGILLVRS  240 (286)
Q Consensus       208 ~aalvg----~~~~~--------k~~vl~~l~~~l~pgg~lv~r~  240 (286)
                      +++-+.    ++..+        -.++.+.+.+. .|++.+++-+
T Consensus        80 i~~g~p~k~g~~r~dl~~~n~~i~~~i~~~i~~~-~p~a~viv~t  123 (318)
T 1y6j_A           80 VTAGANRKPGETRLDLAKKNVMIAKEVTQNIMKY-YNHGVILVVS  123 (318)
T ss_dssp             ECCCC------CHHHHHHHHHHHHHHHHHHHHHH-CCSCEEEECS
T ss_pred             EcCCCCCCCCcCHHHHHHhhHHHHHHHHHHHHHh-CCCcEEEEec
Confidence            877542    11111        13555666665 6999988853

>2efj_A 3,7-dimethylxanthine methyltransferase; SAM-dependant methyltransferase, SAH, theobromine; HET: SAH 37T; 2.00A {Coffea canephora} PDB: 2eg5_A*

Probab=96.52  E-value=0.012  Score=55.79  Aligned_cols=106  Identities=9%  Similarity=-0.084  Sum_probs=69.8

Q ss_pred             CCEEEEeccCCChhhHHHHHh-------------h--cCCCcEEEEEeCC-----------hHHHHHHHHHHHhcCCCCC
Q 042119          131 PKKVAFVGSGPMPLTSIIMAK-------------H--HLTSTHFDNFDID-----------EAANDVARSIVASDAEFEG  184 (286)
Q Consensus       131 ~~~VL~IG~G~lp~tai~lA~-------------~--~~~g~~V~~iDid-----------~~ai~~Ar~~~~~~g~l~~  184 (286)
                      +.+|+|+|||.+|.|...+..             .  ..|..+|..-|+-           |...+..++   ..| -..
T Consensus        53 ~~~IaDlGCssG~NT~~~v~~ii~~i~~~~~~~~~~~~~pe~~v~~nDLp~NDFN~lF~~L~~~~~~~~~---~~g-~~~  128 (384)
T 2efj_A           53 CFKVGDLGCASGPNTFSTVRDIVQSIDKVGQEKKNELERPTIQIFLNDLFQNDFNSVFKLLPSFYRNLEK---ENG-RKI  128 (384)
T ss_dssp             EEEEEEETCCSSHHHHHHHHHHHHHHTCC----------CEEEEEEECCTTSCHHHHHHHHHHHHHHHHH---HTC-CCT
T ss_pred             ceEEEecCCCCCchHHHHHHHHHHHHHHHhhhcccCCCCCceEEEecCCCccchHHHHhhhhhhHhhhhh---hcc-CCC
Confidence            689999999998887766654             0  1367889999988           655544322   234 123


Q ss_pred             CeEEEEccccch---hhcCCCcceeehhhhccCC-hh-------------------------------------HHHHHH
Q 042119          185 RMKFLTRDIMEV---KEQLGEYDCIFLAALVGMS-KE-------------------------------------EKLTIL  223 (286)
Q Consensus       185 ~i~f~~~D~~~~---~~~l~~fD~V~~aalvg~~-~~-------------------------------------~k~~vl  223 (286)
                      +--|+.|....+   +.+-+.||+||-.+.++|- ..                                     +-..+|
T Consensus       129 ~~~f~~gvpgSFy~rlfp~~S~d~v~Ss~aLHWls~~p~~l~~~~s~~~nkg~i~i~~~sp~~v~~ay~~Qf~~D~~~FL  208 (384)
T 2efj_A          129 GSCLIGAMPGSFYSRLFPEESMHFLHSCYCLHWLSQVPSGLVTELGISVNKGCIYSSKASRPPIQKAYLDQFTKDFTTFL  208 (384)
T ss_dssp             TSEEEEECCSCTTSCCSCTTCEEEEEEESCTTBCSSSCCC------CCCCTTCSSSCTTSCHHHHHHHHHHHHHHHHHHH
T ss_pred             CceEEEecchhhhhccCCCCceEEEEecceeeecCCCchhhhccccccccCCceEecCCCCHHHHHHHHHHHHHHHHHHH
Confidence            457888877653   3344689999876555551 11                                     011237


Q ss_pred             HHHHhhccCCcEEEEee
Q 042119          224 GHIRKYMKDGGILLVRS  240 (286)
Q Consensus       224 ~~l~~~l~pgg~lv~r~  240 (286)
                      +..++.|+|||++++..
T Consensus       209 ~~Ra~eL~pGG~mvl~~  225 (384)
T 2efj_A          209 RIHSEELISRGRMLLTF  225 (384)
T ss_dssp             HHHHHHEEEEEEEEEEE
T ss_pred             HHHHHHhccCCeEEEEE
Confidence            77799999999999875

>4a27_A Synaptic vesicle membrane protein VAT-1 homolog-L; oxidoreductase; 2.10A {Homo sapiens}

Probab=96.50  E-value=0.0011  Score=60.97  Aligned_cols=99  Identities=8%  Similarity=0.049  Sum_probs=60.7

Q ss_pred             hcCCCCCCEEEEecc-CCChhhHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEccccchhhc--CC
Q 042119          125 ENGVVQPKKVAFVGS-GPMPLTSIIMAKHHLTSTHFDNFDIDEAANDVARSIVASDAEFEGRMKFLTRDIMEVKEQ--LG  201 (286)
Q Consensus       125 ~~~~~~~~~VL~IG~-G~lp~tai~lA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~g~l~~~i~f~~~D~~~~~~~--l~  201 (286)
                      ...++++++||..|+ |++|..++.+|+ ...+.+|++++ +++..+.++     +| ...-+. ...|..+....  -+
T Consensus       137 ~~~~~~g~~VlV~Ga~G~vG~~a~qla~-~~g~~~V~~~~-~~~~~~~~~-----~g-a~~~~~-~~~~~~~~~~~~~~~  207 (349)
T 4a27_A          137 VANLREGMSVLVHSAGGGVGQAVAQLCS-TVPNVTVFGTA-STFKHEAIK-----DS-VTHLFD-RNADYVQEVKRISAE  207 (349)
T ss_dssp             TSCCCTTCEEEESSTTSHHHHHHHHHHT-TSTTCEEEEEE-CGGGHHHHG-----GG-SSEEEE-TTSCHHHHHHHHCTT
T ss_pred             hcCCCCCCEEEEEcCCcHHHHHHHHHHH-HcCCcEEEEeC-CHHHHHHHH-----cC-CcEEEc-CCccHHHHHHHhcCC
Confidence            345689999999998 999999999998 34468999998 555444443     56 221111 11122111111  13


Q ss_pred             CcceeehhhhccCChhHHHHHHHHHHhhccCCcEEEEee
Q 042119          202 EYDCIFLAALVGMSKEEKLTILGHIRKYMKDGGILLVRS  240 (286)
Q Consensus       202 ~fD~V~~aalvg~~~~~k~~vl~~l~~~l~pgg~lv~r~  240 (286)
                      ++|+||.+.  |.   +   .++...+.|++||++++-.
T Consensus       208 g~Dvv~d~~--g~---~---~~~~~~~~l~~~G~~v~~G  238 (349)
T 4a27_A          208 GVDIVLDCL--CG---D---NTGKGLSLLKPLGTYILYG  238 (349)
T ss_dssp             CEEEEEEEC--C-------------CTTEEEEEEEEEEC
T ss_pred             CceEEEECC--Cc---h---hHHHHHHHhhcCCEEEEEC
Confidence            699999654  21   1   2367889999999998764

>1mv8_A GMD, GDP-mannose 6-dehydrogenase; rossman fold, domain-swapped dimer, enzyme complex with COFA product, oxidoreductase; HET: SUC NAD GDX; 1.55A {Pseudomonas aeruginosa} SCOP: a.100.1.4 c.2.1.6 c.26.3.1 PDB: 1mfz_A* 1muu_A*

Probab=96.49  E-value=0.009  Score=57.00  Aligned_cols=101  Identities=15%  Similarity=0.150  Sum_probs=63.4

Q ss_pred             CEEEEeccCCChhhH-HHHHhhcCCCcEEEEEeCChHHHHHHHHH------------HHhcCCCCCCeEEEEccccchhh
Q 042119          132 KKVAFVGSGPMPLTS-IIMAKHHLTSTHFDNFDIDEAANDVARSI------------VASDAEFEGRMKFLTRDIMEVKE  198 (286)
Q Consensus       132 ~~VL~IG~G~lp~ta-i~lA~~~~~g~~V~~iDid~~ai~~Ar~~------------~~~~g~l~~~i~f~~~D~~~~~~  198 (286)
                      ++|.+||+|.+|... ..|++   .|.+|+++|++++.++..++-            +.+.- -..++++ +.|..+   
T Consensus         1 mkI~VIG~G~vG~~~A~~la~---~G~~V~~~d~~~~~~~~l~~~~~~i~e~~l~~~~~~~~-~~g~l~~-t~~~~~---   72 (436)
T 1mv8_A            1 MRISIFGLGYVGAVCAGCLSA---RGHEVIGVDVSSTKIDLINQGKSPIVEPGLEALLQQGR-QTGRLSG-TTDFKK---   72 (436)
T ss_dssp             CEEEEECCSTTHHHHHHHHHH---TTCEEEEECSCHHHHHHHHTTCCSSCCTTHHHHHHHHH-HTTCEEE-ESCHHH---
T ss_pred             CEEEEECCCHHHHHHHHHHHH---CCCEEEEEECCHHHHHHHhCCCCCcCCCCHHHHHHhhc-ccCceEE-eCCHHH---
Confidence            479999999998864 44555   688999999999988765541            11100 0124544 334322   


Q ss_pred             cCCCcceeehhhhccCC------hhHHHHHHHHHHhhccC---CcEEEEee
Q 042119          199 QLGEYDCIFLAALVGMS------KEEKLTILGHIRKYMKD---GGILLVRS  240 (286)
Q Consensus       199 ~l~~fD~V~~aalvg~~------~~~k~~vl~~l~~~l~p---gg~lv~r~  240 (286)
                      .+...|+||++.--..+      ...-..+++.+.+.+++   |.+++..+
T Consensus        73 ~~~~aDvviiaVptp~~~~~~~dl~~v~~v~~~i~~~l~~~~~~~iVV~~S  123 (436)
T 1mv8_A           73 AVLDSDVSFICVGTPSKKNGDLDLGYIETVCREIGFAIREKSERHTVVVRS  123 (436)
T ss_dssp             HHHTCSEEEECCCCCBCTTSSBCCHHHHHHHHHHHHHHTTCCSCCEEEECS
T ss_pred             HhccCCEEEEEcCCCcccCCCcchHHHHHHHHHHHHHhcccCCCcEEEEeC
Confidence            23468999987522110      00145688999999999   77777654

>1pzg_A LDH, lactate dehydrogenase; apicomplexa, APAD, tetramer, rossmann fold, oxidoreductase; HET: CME A3D; 1.60A {Toxoplasma gondii} SCOP: c.2.1.5 d.162.1.1 PDB: 1pzf_A* 1pze_A* 1pzh_A* 3om9_A* 1sov_A 1sow_A* 3czm_A*

Probab=96.48  E-value=0.01  Score=54.84  Aligned_cols=104  Identities=19%  Similarity=0.194  Sum_probs=67.2

Q ss_pred             CCCCEEEEeccCCChhhHHHHHhhcCCCc-EEEEEeCChHHHHHH-HHHHH---hcCCCCCCeEEEEccccchhhcCCCc
Q 042119          129 VQPKKVAFVGSGPMPLTSIIMAKHHLTST-HFDNFDIDEAANDVA-RSIVA---SDAEFEGRMKFLTRDIMEVKEQLGEY  203 (286)
Q Consensus       129 ~~~~~VL~IG~G~lp~tai~lA~~~~~g~-~V~~iDid~~ai~~A-r~~~~---~~g~l~~~i~f~~~D~~~~~~~l~~f  203 (286)
                      +.+.+|..||+|..|.+...+...  .|. .|+.+|++++.++.. ..+.+   .++ ...++++ +.|..   ..+.+.
T Consensus         7 ~~~~kI~VIGaG~vG~~lA~~la~--~g~~~V~L~D~~~~~~~~~~~~l~~~~~~~~-~~~~i~~-t~d~~---ea~~~a   79 (331)
T 1pzg_A            7 QRRKKVAMIGSGMIGGTMGYLCAL--RELADVVLYDVVKGMPEGKALDLSHVTSVVD-TNVSVRA-EYSYE---AALTGA   79 (331)
T ss_dssp             SCCCEEEEECCSHHHHHHHHHHHH--HTCCEEEEECSSSSHHHHHHHHHHHHHHHTT-CCCCEEE-ECSHH---HHHTTC
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHh--CCCCeEEEEECChhHHHHHHHHHHhhhhccC-CCCEEEE-eCCHH---HHhCCC
Confidence            445799999999998875544432  444 799999999887763 32222   233 2345554 25542   245678


Q ss_pred             ceeehhhhc----cC-----C--------hhHHHHHHHHHHhhccCCcEEEEee
Q 042119          204 DCIFLAALV----GM-----S--------KEEKLTILGHIRKYMKDGGILLVRS  240 (286)
Q Consensus       204 D~V~~aalv----g~-----~--------~~~k~~vl~~l~~~l~pgg~lv~r~  240 (286)
                      |+|++++.+    |+     .        .+.+.++.+.+.+.. |++.+++-+
T Consensus        80 DiVi~a~g~p~~~g~~~~~~~r~dl~~~n~~i~~~i~~~i~~~~-p~a~vi~~t  132 (331)
T 1pzg_A           80 DCVIVTAGLTKVPGKPDSEWSRNDLLPFNSKIIREIGQNIKKYC-PKTFIIVVT  132 (331)
T ss_dssp             SEEEECCSCSSCTTCCGGGCCGGGGHHHHHHHHHHHHHHHHHHC-TTCEEEECC
T ss_pred             CEEEEccCCCCCCCcccCCCCHHHHHHHHHHHHHHHHHHHHHHC-CCcEEEEEc
Confidence            999988643    22     1        123778888888884 899887643

>2rir_A Dipicolinate synthase, A chain; structural genomics, APC1343, PSI-2, structure initiative; HET: MSE NAP; 2.79A {Bacillus subtilis}

Probab=96.48  E-value=0.0075  Score=54.56  Aligned_cols=92  Identities=13%  Similarity=0.057  Sum_probs=61.9

Q ss_pred             CCCCEEEEeccCCChhhHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEccccchhhcCCCcceeeh
Q 042119          129 VQPKKVAFVGSGPMPLTSIIMAKHHLTSTHFDNFDIDEAANDVARSIVASDAEFEGRMKFLTRDIMEVKEQLGEYDCIFL  208 (286)
Q Consensus       129 ~~~~~VL~IG~G~lp~tai~lA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~g~l~~~i~f~~~D~~~~~~~l~~fD~V~~  208 (286)
                      -.+++|+.||+|.+|......++.  .|++|+++|.+++..+.+.    ..|     ++...  ..++...+.++|+|+.
T Consensus       155 l~g~~v~IiG~G~iG~~~a~~l~~--~G~~V~~~d~~~~~~~~~~----~~g-----~~~~~--~~~l~~~l~~aDvVi~  221 (300)
T 2rir_A          155 IHGSQVAVLGLGRTGMTIARTFAA--LGANVKVGARSSAHLARIT----EMG-----LVPFH--TDELKEHVKDIDICIN  221 (300)
T ss_dssp             STTSEEEEECCSHHHHHHHHHHHH--TTCEEEEEESSHHHHHHHH----HTT-----CEEEE--GGGHHHHSTTCSEEEE
T ss_pred             CCCCEEEEEcccHHHHHHHHHHHH--CCCEEEEEECCHHHHHHHH----HCC-----CeEEc--hhhHHHHhhCCCEEEE
Confidence            468999999999999888777763  6889999999987654433    245     12221  1233444568999998


Q ss_pred             hhhccCChhHHHHHHHHHHhhccCCcEEEEee
Q 042119          209 AALVGMSKEEKLTILGHIRKYMKDGGILLVRS  240 (286)
Q Consensus       209 aalvg~~~~~k~~vl~~l~~~l~pgg~lv~r~  240 (286)
                      +.-.++-  .+     ...+.|+||++++--.
T Consensus       222 ~~p~~~i--~~-----~~~~~mk~g~~lin~a  246 (300)
T 2rir_A          222 TIPSMIL--NQ-----TVLSSMTPKTLILDLA  246 (300)
T ss_dssp             CCSSCCB--CH-----HHHTTSCTTCEEEECS
T ss_pred             CCChhhh--CH-----HHHHhCCCCCEEEEEe
Confidence            7543321  11     2457899998876654

>1i4w_A Mitochondrial replication protein MTF1; mitochondrial transcription factor, transcription initiation; 2.60A {Saccharomyces cerevisiae} SCOP: c.66.1.24

Probab=96.47  E-value=0.0067  Score=56.85  Aligned_cols=61  Identities=13%  Similarity=0.132  Sum_probs=49.3

Q ss_pred             CCCEEEEeccCCChhhHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEccccchh
Q 042119          130 QPKKVAFVGSGPMPLTSIIMAKHHLTSTHFDNFDIDEAANDVARSIVASDAEFEGRMKFLTRDIMEVK  197 (286)
Q Consensus       130 ~~~~VL~IG~G~lp~tai~lA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~g~l~~~i~f~~~D~~~~~  197 (286)
                      ++..|++||.|++.+|..++.+  ....+|++||+|+..+..-++..   .  .++++++.+|+.++.
T Consensus        58 ~~~~VlEIGPG~G~LT~~Ll~~--~~~~~vvavE~D~~l~~~L~~~~---~--~~~l~ii~~D~l~~~  118 (353)
T 1i4w_A           58 EELKVLDLYPGVGIQSAIFYNK--YCPRQYSLLEKRSSLYKFLNAKF---E--GSPLQILKRDPYDWS  118 (353)
T ss_dssp             TTCEEEEESCTTCHHHHHHHHH--HCCSEEEEECCCHHHHHHHHHHT---T--TSSCEEECSCTTCHH
T ss_pred             CCCEEEEECCCCCHHHHHHHhh--CCCCEEEEEecCHHHHHHHHHhc---c--CCCEEEEECCccchh
Confidence            4689999999999998887754  23578999999999988887765   2  158999999997654

>2xxj_A L-LDH, L-lactate dehydrogenase; oxidoreductase, hyperthermophIle; HET: NAD; 1.964A {Thermus thermophilus} PDB: 2xxb_A* 3zzn_A* 2v7p_A* 2e37_A* 2v6m_A* 2xxe_A 4a73_A

Probab=96.47  E-value=0.017  Score=52.78  Aligned_cols=103  Identities=19%  Similarity=0.219  Sum_probs=66.5

Q ss_pred             CEEEEeccCCChhhHHHHHhhcCCCcEEEEEeCChHHHHH-HHHHHHhcCCCCCCeEEEEccccchhhcCCCcceeehhh
Q 042119          132 KKVAFVGSGPMPLTSIIMAKHHLTSTHFDNFDIDEAANDV-ARSIVASDAEFEGRMKFLTRDIMEVKEQLGEYDCIFLAA  210 (286)
Q Consensus       132 ~~VL~IG~G~lp~tai~lA~~~~~g~~V~~iDid~~ai~~-Ar~~~~~~g~l~~~i~f~~~D~~~~~~~l~~fD~V~~aa  210 (286)
                      +||..||+|..|.+............+++-+|++++.++- +.++.+... +..++++..+|    ..++.+.|+|++++
T Consensus         1 ~KI~IiGaG~vG~~~a~~l~~~~~~~el~L~Di~~~k~~g~a~dl~~~~~-~~~~~~v~~~~----~~a~~~aD~Vii~a   75 (310)
T 2xxj_A            1 MKVGIVGSGMVGSATAYALALLGVAREVVLVDLDRKLAQAHAEDILHATP-FAHPVWVWAGS----YGDLEGARAVVLAA   75 (310)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCCSEEEEECSSHHHHHHHHHHHHTTGG-GSCCCEEEECC----GGGGTTEEEEEECC
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCCCEEEEEeCChhHHHHHHHHHHHhHh-hcCCeEEEECC----HHHhCCCCEEEECC
Confidence            4899999999998876655532334689999999987763 666655443 23566776544    23467899999877


Q ss_pred             hc----cCChhH----HHHHHH----HHHhhccCCcEEEEee
Q 042119          211 LV----GMSKEE----KLTILG----HIRKYMKDGGILLVRS  240 (286)
Q Consensus       211 lv----g~~~~~----k~~vl~----~l~~~l~pgg~lv~r~  240 (286)
                      .+    |++..+    -..++.    .+.+. .|+|.+++-+
T Consensus        76 g~~~~~g~~r~dl~~~n~~i~~~i~~~i~~~-~p~a~iiv~t  116 (310)
T 2xxj_A           76 GVAQRPGETRLQLLDRNAQVFAQVVPRVLEA-APEAVLLVAT  116 (310)
T ss_dssp             CCCCCTTCCHHHHHHHHHHHHHHHHHHHHHH-CTTCEEEECS
T ss_pred             CCCCCCCcCHHHHHHhhHHHHHHHHHHHHHH-CCCcEEEEec
Confidence            54    222111    023344    44444 7999988853

>3pid_A UDP-glucose 6-dehydrogenase; rossmann fold, oxidoreductase; 1.40A {Klebsiella pneumoniae} PDB: 3pln_A* 3pjg_A* 3phl_A* 3plr_A*

Probab=96.43  E-value=0.008  Score=57.79  Aligned_cols=100  Identities=13%  Similarity=0.236  Sum_probs=65.6

Q ss_pred             CCCEEEEeccCCChhhHHHHHhhcCCCcEEEEEeCChHHHHHHHHH------------HHhcCCCCCCeEEEEccccchh
Q 042119          130 QPKKVAFVGSGPMPLTSIIMAKHHLTSTHFDNFDIDEAANDVARSI------------VASDAEFEGRMKFLTRDIMEVK  197 (286)
Q Consensus       130 ~~~~VL~IG~G~lp~tai~lA~~~~~g~~V~~iDid~~ai~~Ar~~------------~~~~g~l~~~i~f~~~D~~~~~  197 (286)
                      .-++|.+||+|.+|.+......  . |.+|+++|++++.++..++-            +.+ +  ..++++. .|..   
T Consensus        35 ~~mkIaVIGlG~mG~~lA~~La--~-G~~V~~~D~~~~~v~~l~~g~~~i~e~~l~~ll~~-~--~~~l~~t-td~~---  104 (432)
T 3pid_A           35 EFMKITISGTGYVGLSNGVLIA--Q-NHEVVALDIVQAKVDMLNQKISPIVDKEIQEYLAE-K--PLNFRAT-TDKH---  104 (432)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHH--T-TSEEEEECSCHHHHHHHHTTCCSSCCHHHHHHHHH-S--CCCEEEE-SCHH---
T ss_pred             CCCEEEEECcCHHHHHHHHHHH--c-CCeEEEEecCHHHhhHHhccCCccccccHHHHHhh-c--cCCeEEE-cCHH---
Confidence            3469999999999887554443  3 89999999999998876651            111 1  1245542 3432   


Q ss_pred             hcCCCcceeehhhhccCC-------hhHHHHHHHHHHhhccCCcEEEEee
Q 042119          198 EQLGEYDCIFLAALVGMS-------KEEKLTILGHIRKYMKDGGILLVRS  240 (286)
Q Consensus       198 ~~l~~fD~V~~aalvg~~-------~~~k~~vl~~l~~~l~pgg~lv~r~  240 (286)
                      ..+.+.|+||++.--..+       ...=..+++.+.+ ++||.+++..+
T Consensus       105 ea~~~aDvViiaVPt~~~~~~~~~Dl~~V~~v~~~i~~-l~~g~iVV~~S  153 (432)
T 3pid_A          105 DAYRNADYVIIATPTDYDPKTNYFNTSTVEAVIRDVTE-INPNAVMIIKS  153 (432)
T ss_dssp             HHHTTCSEEEECCCCEEETTTTEEECHHHHHHHHHHHH-HCTTSEEEECS
T ss_pred             HHHhCCCEEEEeCCCccccccccccHHHHHHHHHHHHh-cCCCcEEEEeC
Confidence            233578999987321110       1123567788999 99999998865

>2hjr_A Malate dehydrogenase; malaria, structural genomics, structural genomics consortium, SGC, oxidoreductase; HET: CIT APR; 2.20A {Cryptosporidium parvum}

Probab=96.43  E-value=0.019  Score=52.93  Aligned_cols=101  Identities=17%  Similarity=0.205  Sum_probs=65.3

Q ss_pred             CCEEEEeccCCChhhHHHHHhhcCCCc-EEEEEeCChHHHHHHH-HHHH---hcCCCCCCeEEEEccccchhhcCCCcce
Q 042119          131 PKKVAFVGSGPMPLTSIIMAKHHLTST-HFDNFDIDEAANDVAR-SIVA---SDAEFEGRMKFLTRDIMEVKEQLGEYDC  205 (286)
Q Consensus       131 ~~~VL~IG~G~lp~tai~lA~~~~~g~-~V~~iDid~~ai~~Ar-~~~~---~~g~l~~~i~f~~~D~~~~~~~l~~fD~  205 (286)
                      +.+|..||+|.+|.+...+...  .|. .|+.+|++++.++... .+-+   ..+ ...++++. .|.    ..+.+.|+
T Consensus        14 ~~kI~ViGaG~vG~~iA~~la~--~g~~~V~L~Di~~~~l~~~~~~l~~~~~~~~-~~~~i~~t-~d~----~al~~aD~   85 (328)
T 2hjr_A           14 RKKISIIGAGQIGSTIALLLGQ--KDLGDVYMFDIIEGVPQGKALDLNHCMALIG-SPAKIFGE-NNY----EYLQNSDV   85 (328)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHH--TTCCEEEEECSSTTHHHHHHHHHHHHHHHHT-CCCCEEEE-SCG----GGGTTCSE
T ss_pred             CCEEEEECCCHHHHHHHHHHHh--CCCCeEEEEECCHHHHHHHHHHHHhHhhccC-CCCEEEEC-CCH----HHHCCCCE
Confidence            4699999999998875544432  455 7999999998887532 2222   222 12455542 443    34568899


Q ss_pred             eehhhhc----cC--------ChhHHHHHHHHHHhhccCCcEEEEee
Q 042119          206 IFLAALV----GM--------SKEEKLTILGHIRKYMKDGGILLVRS  240 (286)
Q Consensus       206 V~~aalv----g~--------~~~~k~~vl~~l~~~l~pgg~lv~r~  240 (286)
                      |++++-+    |+        +.+-+.++++.+.+.. |++.+++-+
T Consensus        86 VI~avg~p~k~g~tr~dl~~~n~~i~~~i~~~i~~~~-p~a~viv~t  131 (328)
T 2hjr_A           86 VIITAGVPRKPNMTRSDLLTVNAKIVGSVAENVGKYC-PNAFVICIT  131 (328)
T ss_dssp             EEECCSCCCCTTCCSGGGHHHHHHHHHHHHHHHHHHC-TTCEEEECC
T ss_pred             EEEcCCCCCCCCCchhhHHhhhHHHHHHHHHHHHHHC-CCeEEEEec
Confidence            9988632    21        1234777888888875 899877643

>3d4o_A Dipicolinate synthase subunit A; NP_243269.1, structural GEN joint center for structural genomics, JCSG, protein structu initiative, PSI-2; HET: MSE TAR; 2.10A {Bacillus halodurans}

Probab=96.42  E-value=0.011  Score=53.36  Aligned_cols=92  Identities=10%  Similarity=0.044  Sum_probs=61.6

Q ss_pred             CCCCEEEEeccCCChhhHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEccccchhhcCCCcceeeh
Q 042119          129 VQPKKVAFVGSGPMPLTSIIMAKHHLTSTHFDNFDIDEAANDVARSIVASDAEFEGRMKFLTRDIMEVKEQLGEYDCIFL  208 (286)
Q Consensus       129 ~~~~~VL~IG~G~lp~tai~lA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~g~l~~~i~f~~~D~~~~~~~l~~fD~V~~  208 (286)
                      -.+++|+.||+|.+|......++.  .|++|+++|.+++..+.+.    ..|     +++..  ..++...+.++|+|+.
T Consensus       153 l~g~~v~IiG~G~iG~~~a~~l~~--~G~~V~~~dr~~~~~~~~~----~~g-----~~~~~--~~~l~~~l~~aDvVi~  219 (293)
T 3d4o_A          153 IHGANVAVLGLGRVGMSVARKFAA--LGAKVKVGARESDLLARIA----EMG-----MEPFH--ISKAAQELRDVDVCIN  219 (293)
T ss_dssp             STTCEEEEECCSHHHHHHHHHHHH--TTCEEEEEESSHHHHHHHH----HTT-----SEEEE--GGGHHHHTTTCSEEEE
T ss_pred             CCCCEEEEEeeCHHHHHHHHHHHh--CCCEEEEEECCHHHHHHHH----HCC-----CeecC--hhhHHHHhcCCCEEEE
Confidence            568999999999999888777763  6889999999997654432    355     22221  1233344568999998


Q ss_pred             hhhccCChhHHHHHHHHHHhhccCCcEEEEee
Q 042119          209 AALVGMSKEEKLTILGHIRKYMKDGGILLVRS  240 (286)
Q Consensus       209 aalvg~~~~~k~~vl~~l~~~l~pgg~lv~r~  240 (286)
                      +.-.++-  .+     ...+.|+||++++--.
T Consensus       220 ~~p~~~i--~~-----~~l~~mk~~~~lin~a  244 (293)
T 3d4o_A          220 TIPALVV--TA-----NVLAEMPSHTFVIDLA  244 (293)
T ss_dssp             CCSSCCB--CH-----HHHHHSCTTCEEEECS
T ss_pred             CCChHHh--CH-----HHHHhcCCCCEEEEec
Confidence            7543321  12     2345789998877544

>1a5z_A L-lactate dehydrogenase; oxidoreductase, glycolysis, hyperthermophiles, thermotoga MA protein stability; HET: FBP NAD; 2.10A {Thermotoga maritima} SCOP: c.2.1.5 d.162.1.1

Probab=96.37  E-value=0.02  Score=52.32  Aligned_cols=100  Identities=19%  Similarity=0.235  Sum_probs=61.2

Q ss_pred             CEEEEeccCCChhhHHHHHhhcCCCc--EEEEEeCChHHHHHHHHHHH-hcCCCCCCeEEEEccccchhhcCCCcceeeh
Q 042119          132 KKVAFVGSGPMPLTSIIMAKHHLTST--HFDNFDIDEAANDVARSIVA-SDAEFEGRMKFLTRDIMEVKEQLGEYDCIFL  208 (286)
Q Consensus       132 ~~VL~IG~G~lp~tai~lA~~~~~g~--~V~~iDid~~ai~~Ar~~~~-~~g~l~~~i~f~~~D~~~~~~~l~~fD~V~~  208 (286)
                      ++|..||+|.+|.+.......  .|.  +|+.+|++++.++.....+. ... +....++...|.    ..+.+.|+|++
T Consensus         1 mkI~VIGaG~~G~~la~~l~~--~g~~~~V~l~D~~~~~~~~~~~~l~~~~~-~~~~~~i~~~d~----~~~~~aDvVii   73 (319)
T 1a5z_A            1 MKIGIVGLGRVGSSTAFALLM--KGFAREMVLIDVDKKRAEGDALDLIHGTP-FTRRANIYAGDY----ADLKGSDVVIV   73 (319)
T ss_dssp             CEEEEECCSHHHHHHHHHHHH--HTCCSEEEEECSSHHHHHHHHHHHHHHGG-GSCCCEEEECCG----GGGTTCSEEEE
T ss_pred             CEEEEECCCHHHHHHHHHHHh--CCCCCeEEEEeCChHHHHHHHHHHHhhhh-hcCCcEEEeCCH----HHhCCCCEEEE
Confidence            479999999988765443321  445  89999999987776433222 221 112334443442    23567999998


Q ss_pred             hhhccCC----h--------hHHHHHHHHHHhhccCCcEEEEe
Q 042119          209 AALVGMS----K--------EEKLTILGHIRKYMKDGGILLVR  239 (286)
Q Consensus       209 aalvg~~----~--------~~k~~vl~~l~~~l~pgg~lv~r  239 (286)
                      +.-.+..    .        +-+.++++.+.+. .|++.+++-
T Consensus        74 av~~~~~~g~~r~dl~~~n~~i~~~i~~~i~~~-~~~~~ii~~  115 (319)
T 1a5z_A           74 AAGVPQKPGETRLQLLGRNARVMKEIARNVSKY-APDSIVIVV  115 (319)
T ss_dssp             CCCCCCCSSCCHHHHHHHHHHHHHHHHHHHHHH-CTTCEEEEC
T ss_pred             ccCCCCCCCCCHHHHHHHHHHHHHHHHHHHHhh-CCCeEEEEe
Confidence            7654221    1        1245677777777 588877664

>2aef_A Calcium-gated potassium channel MTHK; rossmann fold, helix-turn-helix, Ca2+ binding, flexible interface; 1.70A {Methanothermobacterthermautotrophicus} PDB: 2aej_A 2aem_A 3rbx_A 2ogu_A 2fy8_A 3kxd_A

Probab=96.37  E-value=0.014  Score=50.38  Aligned_cols=95  Identities=11%  Similarity=0.114  Sum_probs=62.3

Q ss_pred             CCCCEEEEeccCCChhhHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEccccchh----hcCCCcc
Q 042119          129 VQPKKVAFVGSGPMPLTSIIMAKHHLTSTHFDNFDIDEAANDVARSIVASDAEFEGRMKFLTRDIMEVK----EQLGEYD  204 (286)
Q Consensus       129 ~~~~~VL~IG~G~lp~tai~lA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~g~l~~~i~f~~~D~~~~~----~~l~~fD  204 (286)
                      ...++|+.+|+|.+|........  ..|. |+.+|.|++.++.++     .|     +.++.+|+.+..    ..+.++|
T Consensus         7 ~~~~~viI~G~G~~G~~la~~L~--~~g~-v~vid~~~~~~~~~~-----~~-----~~~i~gd~~~~~~l~~a~i~~ad   73 (234)
T 2aef_A            7 AKSRHVVICGWSESTLECLRELR--GSEV-FVLAEDENVRKKVLR-----SG-----ANFVHGDPTRVSDLEKANVRGAR   73 (234)
T ss_dssp             ---CEEEEESCCHHHHHHHHHST--TSEE-EEEESCGGGHHHHHH-----TT-----CEEEESCTTCHHHHHHTTCTTCS
T ss_pred             CCCCEEEEECCChHHHHHHHHHH--hCCe-EEEEECCHHHHHHHh-----cC-----CeEEEcCCCCHHHHHhcCcchhc
Confidence            34579999999976654333222  2467 999999999876543     33     688999987532    1356799


Q ss_pred             eeehhhhccCChhHHHHHHHHHHhhccCCcEEEEee
Q 042119          205 CIFLAALVGMSKEEKLTILGHIRKYMKDGGILLVRS  240 (286)
Q Consensus       205 ~V~~aalvg~~~~~k~~vl~~l~~~l~pgg~lv~r~  240 (286)
                      .|+.+.-   + ......+....+.+.|+..+++|.
T Consensus        74 ~vi~~~~---~-d~~n~~~~~~a~~~~~~~~iia~~  105 (234)
T 2aef_A           74 AVIVDLE---S-DSETIHCILGIRKIDESVRIIAEA  105 (234)
T ss_dssp             EEEECCS---C-HHHHHHHHHHHHHHCSSSEEEEEC
T ss_pred             EEEEcCC---C-cHHHHHHHHHHHHHCCCCeEEEEE
Confidence            9886532   1 233345556677789988888874

>3pqe_A L-LDH, L-lactate dehydrogenase; FBP, oxidoreductase; 2.20A {Bacillus subtilis} PDB: 3pqf_A* 3pqd_A*

Probab=96.36  E-value=0.03  Score=51.77  Aligned_cols=108  Identities=19%  Similarity=0.166  Sum_probs=65.8

Q ss_pred             CCCCEEEEeccCCChhhHHHHHhhcCCCcEEEEEeCChHHHH-HHHHHHHhcCCCCCCeEEEEccccchhhcCCCcceee
Q 042119          129 VQPKKVAFVGSGPMPLTSIIMAKHHLTSTHFDNFDIDEAAND-VARSIVASDAEFEGRMKFLTRDIMEVKEQLGEYDCIF  207 (286)
Q Consensus       129 ~~~~~VL~IG~G~lp~tai~lA~~~~~g~~V~~iDid~~ai~-~Ar~~~~~~g~l~~~i~f~~~D~~~~~~~l~~fD~V~  207 (286)
                      +++.+|..||+|.+|.+............+++.+|++++.++ .+..+-.....+..++++..+|.    .++.+.|+|+
T Consensus         3 ~~~~kI~ViGaG~vG~~~a~~l~~~~~~~~l~l~D~~~~k~~g~a~DL~~~~~~~~~~v~i~~~~~----~a~~~aDvVv   78 (326)
T 3pqe_A            3 KHVNKVALIGAGFVGSSYAFALINQGITDELVVIDVNKEKAMGDVMDLNHGKAFAPQPVKTSYGTY----EDCKDADIVC   78 (326)
T ss_dssp             CSCCEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSCHHHHHHHHHHHHHTGGGSSSCCEEEEECG----GGGTTCSEEE
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHhCCCCceEEEEecchHHHHHHHHHHHhccccccCCeEEEeCcH----HHhCCCCEEE
Confidence            457899999999988876654332122248999999988655 35555554442224567666653    2456789999


Q ss_pred             hhhhc----cCChhH----HHHHHHHHHhhc---cCCcEEEEee
Q 042119          208 LAALV----GMSKEE----KLTILGHIRKYM---KDGGILLVRS  240 (286)
Q Consensus       208 ~aalv----g~~~~~----k~~vl~~l~~~l---~pgg~lv~r~  240 (286)
                      +++-+    ||+..+    -..++..+.+.+   .|++.+++-+
T Consensus        79 i~ag~p~kpG~~R~dL~~~N~~Iv~~i~~~I~~~~p~a~vlvvt  122 (326)
T 3pqe_A           79 ICAGANQKPGETRLELVEKNLKIFKGIVSEVMASGFDGIFLVAT  122 (326)
T ss_dssp             ECCSCCCCTTCCHHHHHHHHHHHHHHHHHHHHHTTCCSEEEECS
T ss_pred             EecccCCCCCccHHHHHHHHHHHHHHHHHHHHHhcCCeEEEEcC
Confidence            87643    343222    113334333332   6888887754

>3k96_A Glycerol-3-phosphate dehydrogenase [NAD(P)+]; GPSA, IDP01976, oxidoreductase, phospholipid biosynthesis; HET: EPE; 2.10A {Coxiella burnetii}

Probab=96.35  E-value=0.0097  Score=55.53  Aligned_cols=99  Identities=10%  Similarity=0.143  Sum_probs=64.3

Q ss_pred             CCCEEEEeccCCChhhH-HHHHhhcCCCcEEEEEeCChHHHHHHHHHHHh---cCC--CCCCeEEEEccccchhhcCCCc
Q 042119          130 QPKKVAFVGSGPMPLTS-IIMAKHHLTSTHFDNFDIDEAANDVARSIVAS---DAE--FEGRMKFLTRDIMEVKEQLGEY  203 (286)
Q Consensus       130 ~~~~VL~IG~G~lp~ta-i~lA~~~~~g~~V~~iDid~~ai~~Ar~~~~~---~g~--l~~~i~f~~~D~~~~~~~l~~f  203 (286)
                      ..++|.+||+|.+|.+. ..|++   .|.+|+.+|++++.++..++.-..   ++.  +..++++ +.|..+   ...+.
T Consensus        28 ~~mkI~VIGaG~mG~alA~~La~---~G~~V~l~~r~~~~~~~i~~~~~~~~~l~g~~l~~~i~~-t~d~~e---a~~~a  100 (356)
T 3k96_A           28 FKHPIAILGAGSWGTALALVLAR---KGQKVRLWSYESDHVDEMQAEGVNNRYLPNYPFPETLKA-YCDLKA---SLEGV  100 (356)
T ss_dssp             CCSCEEEECCSHHHHHHHHHHHT---TTCCEEEECSCHHHHHHHHHHSSBTTTBTTCCCCTTEEE-ESCHHH---HHTTC
T ss_pred             cCCeEEEECccHHHHHHHHHHHH---CCCeEEEEeCCHHHHHHHHHcCCCcccCCCCccCCCeEE-ECCHHH---HHhcC
Confidence            35799999999988653 33444   678999999999887665543100   110  1123443 234322   33578


Q ss_pred             ceeehhhhccCChhHHHHHHHHHHhhccCCcEEEEe
Q 042119          204 DCIFLAALVGMSKEEKLTILGHIRKYMKDGGILLVR  239 (286)
Q Consensus       204 D~V~~aalvg~~~~~k~~vl~~l~~~l~pgg~lv~r  239 (286)
                      |+|+++.    +.....++++.+.+.++|+.+++.-
T Consensus       101 DvVilaV----p~~~~~~vl~~i~~~l~~~~ivvs~  132 (356)
T 3k96_A          101 TDILIVV----PSFAFHEVITRMKPLIDAKTRIAWG  132 (356)
T ss_dssp             CEEEECC----CHHHHHHHHHHHGGGCCTTCEEEEC
T ss_pred             CEEEECC----CHHHHHHHHHHHHHhcCCCCEEEEE
Confidence            9999763    2356778999999999988876543

>1t2d_A LDH-P, L-lactate dehydrogenase; ternary complex, oxidoreductase; HET: NAD; 1.10A {Plasmodium falciparum} SCOP: c.2.1.5 d.162.1.1 PDB: 1t25_A* 1t26_A* 1t2c_A* 1t24_A* 2x8l_A 2ydn_A* 2a94_A* 1u4s_A* 1u5a_A* 1u5c_A* 1u4o_A* 1t2e_A* 1xiv_A* 1ceq_A 1ldg_A* 1cet_A* 1oc4_A* 2a92_A* 2aa3_A*

Probab=96.34  E-value=0.024  Score=52.10  Aligned_cols=102  Identities=19%  Similarity=0.193  Sum_probs=66.2

Q ss_pred             CCCEEEEeccCCChhhHHHHHhhcCCCc-EEEEEeCChHHHHHHHHHHHh----cCCCCCCeEEEEccccchhhcCCCcc
Q 042119          130 QPKKVAFVGSGPMPLTSIIMAKHHLTST-HFDNFDIDEAANDVARSIVAS----DAEFEGRMKFLTRDIMEVKEQLGEYD  204 (286)
Q Consensus       130 ~~~~VL~IG~G~lp~tai~lA~~~~~g~-~V~~iDid~~ai~~Ar~~~~~----~g~l~~~i~f~~~D~~~~~~~l~~fD  204 (286)
                      +..+|..||+|.+|.+...+...  .|. .|+.+|++++.++.....+..    .+ ...++++. .|.    .++.+.|
T Consensus         3 ~~~kI~VIGaG~vG~~ia~~la~--~g~~~v~L~Di~~~~l~~~~~~l~~~~~~~~-~~~~i~~t-~d~----~al~~aD   74 (322)
T 1t2d_A            3 PKAKIVLVGSGMIGGVMATLIVQ--KNLGDVVLFDIVKNMPHGKALDTSHTNVMAY-SNCKVSGS-NTY----DDLAGAD   74 (322)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHH--TTCCEEEEECSSSSHHHHHHHHHHTHHHHHT-CCCCEEEE-CCG----GGGTTCS
T ss_pred             CCCEEEEECCCHHHHHHHHHHHh--CCCCeEEEEeCCHHHHHHHHHHHHhhhhhcC-CCcEEEEC-CCH----HHhCCCC
Confidence            45699999999999875554442  444 799999999887754333332    23 22344432 443    3456889


Q ss_pred             eeehhhhc----cCC-------------hhHHHHHHHHHHhhccCCcEEEEee
Q 042119          205 CIFLAALV----GMS-------------KEEKLTILGHIRKYMKDGGILLVRS  240 (286)
Q Consensus       205 ~V~~aalv----g~~-------------~~~k~~vl~~l~~~l~pgg~lv~r~  240 (286)
                      +|++++-+    |+.             .+-+.++.+.+.+.. |++.+++-+
T Consensus        75 ~Vi~a~g~p~k~g~~~qe~~r~dl~~~n~~i~~~i~~~i~~~~-p~a~iiv~t  126 (322)
T 1t2d_A           75 VVIVTAGFTKAPGKSDKEWNRDDLLPLNNKIMIEIGGHIKKNC-PNAFIIVVT  126 (322)
T ss_dssp             EEEECCSCSSCTTCCSTTCCGGGGHHHHHHHHHHHHHHHHHHC-TTSEEEECS
T ss_pred             EEEEeCCCCCCCCCCcccccHHHHHHHHHHHHHHHHHHHHHHC-CCeEEEEec
Confidence            99988633    222             134777888888885 999887643

>3b5i_A S-adenosyl-L-methionine:salicylic acid carboxyl methyltransferase-like protein; sabath family, indole-3-acetic acid, S-AD methionine; HET: SAH; 2.75A {Arabidopsis thaliana}

Probab=96.34  E-value=0.014  Score=55.06  Aligned_cols=109  Identities=13%  Similarity=-0.001  Sum_probs=63.3

Q ss_pred             CCEEEEeccCCChhhHHHHHh-------h------cCCCcEEEEEeCChHH-HHHHHHHHHhcCC----------CCCCe
Q 042119          131 PKKVAFVGSGPMPLTSIIMAK-------H------HLTSTHFDNFDIDEAA-NDVARSIVASDAE----------FEGRM  186 (286)
Q Consensus       131 ~~~VL~IG~G~lp~tai~lA~-------~------~~~g~~V~~iDid~~a-i~~Ar~~~~~~g~----------l~~~i  186 (286)
                      +.+|+|+|||.+|.|...+..       +      ..|..+|..-|+-..- +.+-+.+ .....          ...+-
T Consensus        53 ~~~IaDlGCssG~Nt~~~v~~ii~~i~~~~~~~~~~~pe~~v~~nDLp~NDFn~lF~~L-~~~~~~~~~~~~~~~~~~~~  131 (374)
T 3b5i_A           53 PFTAVDLGCSSGANTVHIIDFIVKHISKRFDAAGIDPPEFTAFFSDLPSNDFNTLFQLL-PPLVSNTCMEECLAADGNRS  131 (374)
T ss_dssp             CEEEEEETCCSSHHHHHHHHHHHHHHHHHHHHTTCCCCCEEEEEEECTTSCHHHHHHHS-CCBCCCC--CCC---CCCBC
T ss_pred             ceEEEecCCCCChhHHHHHHHHHHHHHHHHhhcCCCCCceeEEecCCCccchHHHHhhh-hhhhhhcchhhhccccCCCc
Confidence            589999999998877665221       0      0256777777765533 2222221 11000          00112


Q ss_pred             EEEEccccc---hhhcCCCcceeehhhhccCCh-------------------------------------hHHHHHHHHH
Q 042119          187 KFLTRDIME---VKEQLGEYDCIFLAALVGMSK-------------------------------------EEKLTILGHI  226 (286)
Q Consensus       187 ~f~~~D~~~---~~~~l~~fD~V~~aalvg~~~-------------------------------------~~k~~vl~~l  226 (286)
                      .|..|....   ...+-+.||+|+-+..++|-.                                     .+-..+|+..
T Consensus       132 ~f~~gvpgSFy~rlfP~~S~d~v~Ss~aLHWls~~p~~l~~~~~~~~nkg~i~~~~~~~~v~~ay~~Qf~~D~~~fL~~r  211 (374)
T 3b5i_A          132 YFVAGVPGSFYRRLFPARTIDFFHSAFSLHWLSQVPESVTDRRSAAYNRGRVFIHGAGEKTTTAYKRQFQADLAEFLRAR  211 (374)
T ss_dssp             SEEEEEESCTTSCCSCTTCEEEEEEESCTTBCSSCCGGGGCTTSTTCCTTTSSSSSCCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             eEEEecChhhhcccCCCcceEEEEecceeeeeccCchhhhccccccccCCceEeCCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence            355555443   223346799998665444511                                     1334578999


Q ss_pred             HhhccCCcEEEEee
Q 042119          227 RKYMKDGGILLVRS  240 (286)
Q Consensus       227 ~~~l~pgg~lv~r~  240 (286)
                      ++.|+|||++++..
T Consensus       212 a~eL~pGG~mvl~~  225 (374)
T 3b5i_A          212 AAEVKRGGAMFLVC  225 (374)
T ss_dssp             HHHEEEEEEEEEEE
T ss_pred             HHHhCCCCEEEEEE
Confidence            99999999998864

>2i6t_A Ubiquitin-conjugating enzyme E2-like isoform A; L-lactate dehydrogenase, oxidoreductase, ubiquitin-protein L unknown function; 2.10A {Homo sapiens} PDB: 3dl2_A

Probab=96.31  E-value=0.011  Score=54.09  Aligned_cols=101  Identities=11%  Similarity=0.225  Sum_probs=62.5

Q ss_pred             CCCCEEEEeccCCChhh-HHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEccccchhhcCCCcceee
Q 042119          129 VQPKKVAFVGSGPMPLT-SIIMAKHHLTSTHFDNFDIDEAANDVARSIVASDAEFEGRMKFLTRDIMEVKEQLGEYDCIF  207 (286)
Q Consensus       129 ~~~~~VL~IG~G~lp~t-ai~lA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~g~l~~~i~f~~~D~~~~~~~l~~fD~V~  207 (286)
                      .+..+|..||+|.+|.+ +..++.. ....+|+-+|+++++...+.++.....   .+++. ++|.    .++.+.|+|+
T Consensus        12 ~~~~kV~ViGaG~vG~~~a~~l~~~-g~~~ev~L~Di~~~~~g~a~dl~~~~~---~~i~~-t~d~----~~l~~aD~Vi   82 (303)
T 2i6t_A           12 KTVNKITVVGGGELGIACTLAISAK-GIADRLVLLDLSEGTKGATMDLEIFNL---PNVEI-SKDL----SASAHSKVVI   82 (303)
T ss_dssp             --CCEEEEECCSHHHHHHHHHHHHH-TCCSEEEEECCC-----CHHHHHHHTC---TTEEE-ESCG----GGGTTCSEEE
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHhc-CCCCEEEEEcCCcchHHHHHHHhhhcC---CCeEE-eCCH----HHHCCCCEEE
Confidence            45589999999976643 3334441 233489999999987777777775322   47766 3553    4567899999


Q ss_pred             hhhhcc---C--------ChhHHHHHHHHHHhhccCCcEEEEe
Q 042119          208 LAALVG---M--------SKEEKLTILGHIRKYMKDGGILLVR  239 (286)
Q Consensus       208 ~aalvg---~--------~~~~k~~vl~~l~~~l~pgg~lv~r  239 (286)
                      +++-++   |        +.+-+.++++.+.++. |++.+++-
T Consensus        83 ~aag~~~pG~tR~dl~~~n~~i~~~i~~~i~~~~-p~a~iiv~  124 (303)
T 2i6t_A           83 FTVNSLGSSQSYLDVVQSNVDMFRALVPALGHYS-QHSVLLVA  124 (303)
T ss_dssp             ECCCC----CCHHHHHHHHHHHHHHHHHHHHHHT-TTCEEEEC
T ss_pred             EcCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhC-CCeEEEEc
Confidence            886331   1        1234677888888875 99987664

>1wdk_A Fatty oxidation complex alpha subunit; alpha2BETA2 heterotetrameric complex, lyase, oxidoreductase/transferase complex, lyase; HET: ACO NAD N8E; 2.50A {Pseudomonas fragi} SCOP: a.100.1.3 a.100.1.3 c.2.1.6 c.14.1.3 PDB: 1wdl_A* 1wdm_A* 2d3t_A*

Probab=96.31  E-value=0.0071  Score=61.60  Aligned_cols=101  Identities=18%  Similarity=0.201  Sum_probs=68.4

Q ss_pred             CCCCEEEEeccCCChhh-HHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHh-------cCCCC--------CCeEEEEcc
Q 042119          129 VQPKKVAFVGSGPMPLT-SIIMAKHHLTSTHFDNFDIDEAANDVARSIVAS-------DAEFE--------GRMKFLTRD  192 (286)
Q Consensus       129 ~~~~~VL~IG~G~lp~t-ai~lA~~~~~g~~V~~iDid~~ai~~Ar~~~~~-------~g~l~--------~~i~f~~~D  192 (286)
                      .+-++|.+||+|.+|.. +..+++   .|.+|+.+|++++.++.+++.++.       .|.+.        .++++. .|
T Consensus       312 ~~i~kV~VIGaG~MG~~iA~~la~---aG~~V~l~D~~~~~~~~~~~~i~~~l~~~~~~G~~~~~~~~~~~~~i~~~-~d  387 (715)
T 1wdk_A          312 KDVKQAAVLGAGIMGGGIAYQSAS---KGTPILMKDINEHGIEQGLAEAAKLLVGRVDKGRMTPAKMAEVLNGIRPT-LS  387 (715)
T ss_dssp             CCCSSEEEECCHHHHHHHHHHHHH---TTCCEEEECSSHHHHHHHHHHHHHHHHHHHTTTSSCHHHHHHHHHHEEEE-SS
T ss_pred             ccCCEEEEECCChhhHHHHHHHHh---CCCEEEEEECCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHhcCeEEE-CC
Confidence            34568999999998865 334454   688999999999999887554321       22110        124432 33


Q ss_pred             ccchhhcCCCcceeehhhhccCChhHHHHHHHHHHhhccCCcEEEEe
Q 042119          193 IMEVKEQLGEYDCIFLAALVGMSKEEKLTILGHIRKYMKDGGILLVR  239 (286)
Q Consensus       193 ~~~~~~~l~~fD~V~~aalvg~~~~~k~~vl~~l~~~l~pgg~lv~r  239 (286)
                      .    ..+.+.|+|+.+..  .+.+-|..++.++.+.++|+.+|+..
T Consensus       388 ~----~~~~~aDlVIeaV~--e~~~vk~~v~~~l~~~~~~~~Ilasn  428 (715)
T 1wdk_A          388 Y----GDFGNVDLVVEAVV--ENPKVKQAVLAEVENHVREDAILASN  428 (715)
T ss_dssp             S----TTGGGCSEEEECCC--SCHHHHHHHHHHHHTTSCTTCEEEEC
T ss_pred             H----HHHCCCCEEEEcCC--CCHHHHHHHHHHHHhhCCCCeEEEeC
Confidence            2    23457899998743  23456889999999999999877643

>4ezb_A Uncharacterized conserved protein; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium; 2.10A {Sinorhizobium meliloti}

Probab=96.28  E-value=0.0093  Score=54.52  Aligned_cols=92  Identities=10%  Similarity=0.134  Sum_probs=58.7

Q ss_pred             CCEEEEeccCCChhhHHH-HHhhcCCC-cEEEEEeCChHHHHHHH---HHHHhcCCCCCCeEEEEc-cccchhhcCCCcc
Q 042119          131 PKKVAFVGSGPMPLTSII-MAKHHLTS-THFDNFDIDEAANDVAR---SIVASDAEFEGRMKFLTR-DIMEVKEQLGEYD  204 (286)
Q Consensus       131 ~~~VL~IG~G~lp~tai~-lA~~~~~g-~~V~~iDid~~ai~~Ar---~~~~~~g~l~~~i~f~~~-D~~~~~~~l~~fD  204 (286)
                      .++|.+||+|.+|..... |++   .| .+|+++|++++..+.++   +.+...|     +   .. +..+.   ..+.|
T Consensus        24 ~m~IgvIG~G~mG~~lA~~L~~---~G~~~V~~~dr~~~~~~~~~~~~~~~~~~g-----~---~~~s~~e~---~~~aD   89 (317)
T 4ezb_A           24 MTTIAFIGFGEAAQSIAGGLGG---RNAARLAAYDLRFNDPAASGALRARAAELG-----V---EPLDDVAG---IACAD   89 (317)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHT---TTCSEEEEECGGGGCTTTHHHHHHHHHHTT-----C---EEESSGGG---GGGCS
T ss_pred             CCeEEEECccHHHHHHHHHHHH---cCCCeEEEEeCCCccccchHHHHHHHHHCC-----C---CCCCHHHH---HhcCC
Confidence            468999999988865433 333   67 89999999984222222   2223345     2   33 43332   34679


Q ss_pred             eeehhhhccCChhHHHHHHHHHHhhccCCcEEEEee
Q 042119          205 CIFLAALVGMSKEEKLTILGHIRKYMKDGGILLVRS  240 (286)
Q Consensus       205 ~V~~aalvg~~~~~k~~vl~~l~~~l~pgg~lv~r~  240 (286)
                      +||++.--    ..-.+.++.+.+.++||.+++-.+
T Consensus        90 vVi~avp~----~~~~~~~~~i~~~l~~~~ivv~~s  121 (317)
T 4ezb_A           90 VVLSLVVG----AATKAVAASAAPHLSDEAVFIDLN  121 (317)
T ss_dssp             EEEECCCG----GGHHHHHHHHGGGCCTTCEEEECC
T ss_pred             EEEEecCC----HHHHHHHHHHHhhcCCCCEEEECC
Confidence            99976432    333456789999999998887654

>4gwg_A 6-phosphogluconate dehydrogenase, decarboxylating; 6-phosphoglyconate dehydrogenase, NADP, oxido; HET: MES; 1.39A {Homo sapiens} PDB: 4gwk_A* 2jkv_A* 2pgd_A 1pgo_A* 1pgp_A* 1pgq_A* 1pgn_A

Probab=96.27  E-value=0.0063  Score=59.31  Aligned_cols=99  Identities=13%  Similarity=0.128  Sum_probs=66.2

Q ss_pred             CCEEEEeccCCChhhH-HHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEccccchhhcCCCcceeehh
Q 042119          131 PKKVAFVGSGPMPLTS-IIMAKHHLTSTHFDNFDIDEAANDVARSIVASDAEFEGRMKFLTRDIMEVKEQLGEYDCIFLA  209 (286)
Q Consensus       131 ~~~VL~IG~G~lp~ta-i~lA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~g~l~~~i~f~~~D~~~~~~~l~~fD~V~~a  209 (286)
                      .++|.+||.|.+|... ..|++   .|.+|+++|++++.++...+.    +..+.++.. +.+..++...+...|+||++
T Consensus         4 ~~kIgiIGlG~MG~~lA~~L~~---~G~~V~v~dr~~~~~~~l~~~----g~~g~~i~~-~~s~~e~v~~l~~aDvVil~   75 (484)
T 4gwg_A            4 QADIALIGLAVMGQNLILNMND---HGFVVCAFNRTVSKVDDFLAN----EAKGTKVVG-AQSLKEMVSKLKKPRRIILL   75 (484)
T ss_dssp             CBSEEEECCSHHHHHHHHHHHH---TTCCEEEECSSTHHHHHHHHT----TTTTSSCEE-CSSHHHHHHTBCSSCEEEEC
T ss_pred             CCEEEEEChhHHHHHHHHHHHH---CCCEEEEEeCCHHHHHHHHhc----ccCCCceec-cCCHHHHHhhccCCCEEEEe
Confidence            3689999999988763 33444   688999999999887654442    211123322 34555555555578999976


Q ss_pred             hhccCChhHHHHHHHHHHhhccCCcEEEEee
Q 042119          210 ALVGMSKEEKLTILGHIRKYMKDGGILLVRS  240 (286)
Q Consensus       210 alvg~~~~~k~~vl~~l~~~l~pgg~lv~r~  240 (286)
                      .-.+   +.-..+++.+.+.|+||.+|+--+
T Consensus        76 Vp~~---~~v~~vl~~l~~~L~~g~iIId~s  103 (484)
T 4gwg_A           76 VKAG---QAVDDFIEKLVPLLDTGDIIIDGG  103 (484)
T ss_dssp             SCSS---HHHHHHHHHHGGGCCTTCEEEECS
T ss_pred             cCCh---HHHHHHHHHHHHhcCCCCEEEEcC
Confidence            4321   234568899999999998777643

>3iup_A Putative NADPH:quinone oxidoreductase; YP_296108.1, structur genomics, joint center for structural genomics, JCSG, prote structure initiative; HET: MSE NDP; 1.70A {Ralstonia eutropha}

Probab=96.27  E-value=0.0011  Score=62.00  Aligned_cols=75  Identities=7%  Similarity=-0.009  Sum_probs=52.3

Q ss_pred             CCCCEEEEe--ccCCChhhHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEccccchhhcC---CCc
Q 042119          129 VQPKKVAFV--GSGPMPLTSIIMAKHHLTSTHFDNFDIDEAANDVARSIVASDAEFEGRMKFLTRDIMEVKEQL---GEY  203 (286)
Q Consensus       129 ~~~~~VL~I--G~G~lp~tai~lA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~g~l~~~i~f~~~D~~~~~~~l---~~f  203 (286)
                      .++++||.+  |+|++|+.++.+|+.  .|++|+++|.+++..+++++    +| ...-+.....|..+.....   .++
T Consensus       169 ~~g~~vlV~gag~G~vG~~a~q~a~~--~Ga~Vi~~~~~~~~~~~~~~----lG-a~~~~~~~~~~~~~~v~~~t~~~g~  241 (379)
T 3iup_A          169 LEGHSALVHTAAASNLGQMLNQICLK--DGIKLVNIVRKQEQADLLKA----QG-AVHVCNAASPTFMQDLTEALVSTGA  241 (379)
T ss_dssp             HTTCSCEEESSTTSHHHHHHHHHHHH--HTCCEEEEESSHHHHHHHHH----TT-CSCEEETTSTTHHHHHHHHHHHHCC
T ss_pred             cCCCEEEEECCCCCHHHHHHHHHHHH--CCCEEEEEECCHHHHHHHHh----CC-CcEEEeCCChHHHHHHHHHhcCCCc
Confidence            678999999  899999999999994  68999999999999888875    67 2222222222221111111   269


Q ss_pred             ceeehhh
Q 042119          204 DCIFLAA  210 (286)
Q Consensus       204 D~V~~aa  210 (286)
                      |+||.+.
T Consensus       242 d~v~d~~  248 (379)
T 3iup_A          242 TIAFDAT  248 (379)
T ss_dssp             CEEEESC
T ss_pred             eEEEECC
Confidence            9999654

>2hmt_A YUAA protein; RCK, KTN, KTR, KTRA, ktrab, membrane protein, ION transporter, symporter, transport protein; HET: NAI; 2.20A {Bacillus subtilis} SCOP: c.2.1.9 PDB: 2hms_A* 2hmu_A* 2hmv_A* 2hmw_A* 1lsu_A*

Probab=96.23  E-value=0.0071  Score=47.26  Aligned_cols=95  Identities=15%  Similarity=0.139  Sum_probs=59.2

Q ss_pred             CCEEEEeccCCChhhHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEccccchh--hc--CCCccee
Q 042119          131 PKKVAFVGSGPMPLTSIIMAKHHLTSTHFDNFDIDEAANDVARSIVASDAEFEGRMKFLTRDIMEVK--EQ--LGEYDCI  206 (286)
Q Consensus       131 ~~~VL~IG~G~lp~tai~lA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~g~l~~~i~f~~~D~~~~~--~~--l~~fD~V  206 (286)
                      .++|+.+|+|.+|.........  .|.+|+.+|.+++..+.++    ..|     ..++.+|..+..  ..  ..++|+|
T Consensus         6 ~~~v~I~G~G~iG~~~a~~l~~--~g~~v~~~d~~~~~~~~~~----~~~-----~~~~~~d~~~~~~l~~~~~~~~d~v   74 (144)
T 2hmt_A            6 NKQFAVIGLGRFGGSIVKELHR--MGHEVLAVDINEEKVNAYA----SYA-----THAVIANATEENELLSLGIRNFEYV   74 (144)
T ss_dssp             CCSEEEECCSHHHHHHHHHHHH--TTCCCEEEESCHHHHHTTT----TTC-----SEEEECCTTCHHHHHTTTGGGCSEE
T ss_pred             CCcEEEECCCHHHHHHHHHHHH--CCCEEEEEeCCHHHHHHHH----HhC-----CEEEEeCCCCHHHHHhcCCCCCCEE
Confidence            4689999999888765554442  6789999999987654332    123     356778875421  11  3468998


Q ss_pred             ehhhhccCChhHHHHHHHHHHhhccCCcEEEEee
Q 042119          207 FLAALVGMSKEEKLTILGHIRKYMKDGGILLVRS  240 (286)
Q Consensus       207 ~~aalvg~~~~~k~~vl~~l~~~l~pgg~lv~r~  240 (286)
                      +.+.-  .+. .....+....+.+.++ .++.+.
T Consensus        75 i~~~~--~~~-~~~~~~~~~~~~~~~~-~ii~~~  104 (144)
T 2hmt_A           75 IVAIG--ANI-QASTLTTLLLKELDIP-NIWVKA  104 (144)
T ss_dssp             EECCC--SCH-HHHHHHHHHHHHTTCS-EEEEEC
T ss_pred             EECCC--Cch-HHHHHHHHHHHHcCCC-eEEEEe
Confidence            86542  221 2223445556667776 666654

>3ojo_A CAP5O; rossmann fold, complex with cofactor NAD and EU(PDC)3, oxidi conformation, oxidoreductase; HET: NAD PDC; 2.50A {Staphylococcus aureus} PDB: 3ojl_A*

Probab=96.23  E-value=0.02  Score=54.91  Aligned_cols=100  Identities=22%  Similarity=0.293  Sum_probs=65.6

Q ss_pred             CCCCEEEEeccCCChhh-HHHHHhhcCCCcEEEEEeCChHHHHHHHH------------HHHhcCCCCCCeEEEEccccc
Q 042119          129 VQPKKVAFVGSGPMPLT-SIIMAKHHLTSTHFDNFDIDEAANDVARS------------IVASDAEFEGRMKFLTRDIME  195 (286)
Q Consensus       129 ~~~~~VL~IG~G~lp~t-ai~lA~~~~~g~~V~~iDid~~ai~~Ar~------------~~~~~g~l~~~i~f~~~D~~~  195 (286)
                      ..+++.-.||.|-+|+. +..||+   .|.+|+++|+|++.++.-++            ++++.- ...+++|. .|   
T Consensus         9 ~~~~~~~ViGlGyvGlp~A~~La~---~G~~V~~~D~~~~kv~~L~~g~~pi~epgl~~ll~~~~-~~g~l~~t-td---   80 (431)
T 3ojo_A            9 HHGSKLTVVGLGYIGLPTSIMFAK---HGVDVLGVDINQQTIDKLQNGQISIEEPGLQEVYEEVL-SSGKLKVS-TT---   80 (431)
T ss_dssp             ---CEEEEECCSTTHHHHHHHHHH---TTCEEEEECSCHHHHHHHHTTCCSSCCTTHHHHHHHHH-HTTCEEEE-SS---
T ss_pred             ccCCccEEEeeCHHHHHHHHHHHH---CCCEEEEEECCHHHHHHHHCCCCCcCCCCHHHHHHhhc-ccCceEEe-Cc---
Confidence            56899999999999986 455666   78999999999999887654            222110 01345553 23   


Q ss_pred             hhhcCCCcceeehhhhccC--------ChhHHHHHHHHHHhhccCCcEEEEee
Q 042119          196 VKEQLGEYDCIFLAALVGM--------SKEEKLTILGHIRKYMKDGGILLVRS  240 (286)
Q Consensus       196 ~~~~l~~fD~V~~aalvg~--------~~~~k~~vl~~l~~~l~pgg~lv~r~  240 (286)
                          ..+.|+||++---..        +...=....+.+.+.|+||.+++..+
T Consensus        81 ----~~~aDvvii~VpTp~~~~~~~~~Dl~~V~~~~~~i~~~l~~g~iVV~~S  129 (431)
T 3ojo_A           81 ----PEASDVFIIAVPTPNNDDQYRSCDISLVMRALDSILPFLKKGNTIIVES  129 (431)
T ss_dssp             ----CCCCSEEEECCCCCBCSSSSCBBCCHHHHHHHHHHGGGCCTTEEEEECS
T ss_pred             ----hhhCCEEEEEeCCCccccccCCccHHHHHHHHHHHHHhCCCCCEEEEec
Confidence                236899987642211        11123456788999999999888876

>3ic5_A Putative saccharopine dehydrogenase; structural genomics, APC63807.2, N-terminal domain, saccharo dehydrogenase, PSI-2; HET: MSE; 2.08A {Ruegeria pomeroyi}

Probab=96.19  E-value=0.027  Score=42.31  Aligned_cols=70  Identities=23%  Similarity=0.207  Sum_probs=49.4

Q ss_pred             CCCEEEEeccCCChhhHHHHHhhcCCC-cEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEccccch---hhcCCCcce
Q 042119          130 QPKKVAFVGSGPMPLTSIIMAKHHLTS-THFDNFDIDEAANDVARSIVASDAEFEGRMKFLTRDIMEV---KEQLGEYDC  205 (286)
Q Consensus       130 ~~~~VL~IG~G~lp~tai~lA~~~~~g-~~V~~iDid~~ai~~Ar~~~~~~g~l~~~i~f~~~D~~~~---~~~l~~fD~  205 (286)
                      ..++|+.+|+|.+|.........  .| .+|+.+|++++..+...    ..     .+.+...|..+.   ...+.++|+
T Consensus         4 ~~~~v~I~G~G~iG~~~~~~l~~--~g~~~v~~~~r~~~~~~~~~----~~-----~~~~~~~d~~~~~~~~~~~~~~d~   72 (118)
T 3ic5_A            4 MRWNICVVGAGKIGQMIAALLKT--SSNYSVTVADHDLAALAVLN----RM-----GVATKQVDAKDEAGLAKALGGFDA   72 (118)
T ss_dssp             TCEEEEEECCSHHHHHHHHHHHH--CSSEEEEEEESCHHHHHHHH----TT-----TCEEEECCTTCHHHHHHHTTTCSE
T ss_pred             CcCeEEEECCCHHHHHHHHHHHh--CCCceEEEEeCCHHHHHHHH----hC-----CCcEEEecCCCHHHHHHHHcCCCE
Confidence            35799999999887765544432  56 89999999998766554    22     467777887642   233468999


Q ss_pred             eehhh
Q 042119          206 IFLAA  210 (286)
Q Consensus       206 V~~aa  210 (286)
                      |+.++
T Consensus        73 vi~~~   77 (118)
T 3ic5_A           73 VISAA   77 (118)
T ss_dssp             EEECS
T ss_pred             EEECC
Confidence            99765

>1bg6_A N-(1-D-carboxylethyl)-L-norvaline dehydrogenase; L) stereospecific opine dehydrogenase, oxidoreductase; 1.80A {Arthrobacter SP} SCOP: a.100.1.5 c.2.1.6

Probab=96.18  E-value=0.018  Score=52.43  Aligned_cols=96  Identities=20%  Similarity=0.242  Sum_probs=60.7

Q ss_pred             CCEEEEeccCCChhhHH-HHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCC-C-CC------CeEEEEccccchhhcCC
Q 042119          131 PKKVAFVGSGPMPLTSI-IMAKHHLTSTHFDNFDIDEAANDVARSIVASDAE-F-EG------RMKFLTRDIMEVKEQLG  201 (286)
Q Consensus       131 ~~~VL~IG~G~lp~tai-~lA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~g~-l-~~------~i~f~~~D~~~~~~~l~  201 (286)
                      .++|+.||+|.+|.... .|++   .|.+|+.+|.+++.++..++.   .|. + +.      ++.....|..+   ...
T Consensus         4 ~mki~iiG~G~~G~~~a~~L~~---~g~~V~~~~r~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~---~~~   74 (359)
T 1bg6_A            4 SKTYAVLGLGNGGHAFAAYLAL---KGQSVLAWDIDAQRIKEIQDR---GAIIAEGPGLAGTAHPDLLTSDIGL---AVK   74 (359)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHH---TTCEEEEECSCHHHHHHHHHH---TSEEEESSSCCEEECCSEEESCHHH---HHT
T ss_pred             cCeEEEECCCHHHHHHHHHHHh---CCCEEEEEeCCHHHHHHHHhc---CCeEEeccccccccccceecCCHHH---HHh
Confidence            36999999998875433 3444   678999999999887655443   120 0 00      01012223222   235


Q ss_pred             CcceeehhhhccCChhHHHHHHHHHHhhccCCcEEEEe
Q 042119          202 EYDCIFLAALVGMSKEEKLTILGHIRKYMKDGGILLVR  239 (286)
Q Consensus       202 ~fD~V~~aalvg~~~~~k~~vl~~l~~~l~pgg~lv~r  239 (286)
                      .+|+|+++.-.    ..-.++++.+.+.+++|..++.-
T Consensus        75 ~~D~vi~~v~~----~~~~~~~~~l~~~l~~~~~vv~~  108 (359)
T 1bg6_A           75 DADVILIVVPA----IHHASIAANIASYISEGQLIILN  108 (359)
T ss_dssp             TCSEEEECSCG----GGHHHHHHHHGGGCCTTCEEEES
T ss_pred             cCCEEEEeCCc----hHHHHHHHHHHHhCCCCCEEEEc
Confidence            79999987432    23357889999999999877665

>2ewd_A Lactate dehydrogenase,; protein-substrate_cofactor analog complex, oxidoreductase; HET: A3D; 2.00A {Cryptosporidium parvum} PDB: 2frm_A 2fn7_A* 2fnz_A* 2fm3_A

Probab=96.18  E-value=0.023  Score=51.78  Aligned_cols=102  Identities=16%  Similarity=0.189  Sum_probs=64.0

Q ss_pred             CCCEEEEeccCCChhhHHHHHhhcCCCc-EEEEEeCChHHHHHH-HHHHHh---cCCCCCCeEEEEccccchhhcCCCcc
Q 042119          130 QPKKVAFVGSGPMPLTSIIMAKHHLTST-HFDNFDIDEAANDVA-RSIVAS---DAEFEGRMKFLTRDIMEVKEQLGEYD  204 (286)
Q Consensus       130 ~~~~VL~IG~G~lp~tai~lA~~~~~g~-~V~~iDid~~ai~~A-r~~~~~---~g~l~~~i~f~~~D~~~~~~~l~~fD  204 (286)
                      .+.+|..||+|.+|.+.......  .|. +|+.+|++++.++.. ..+...   .+ ...+++.. .|.    ..+.+.|
T Consensus         3 ~~~kI~VIGaG~~G~~ia~~la~--~g~~~V~l~D~~~~~~~~~~~~l~~~~~~~~-~~~~i~~t-~d~----~a~~~aD   74 (317)
T 2ewd_A            3 ERRKIAVIGSGQIGGNIAYIVGK--DNLADVVLFDIAEGIPQGKALDITHSMVMFG-STSKVIGT-DDY----ADISGSD   74 (317)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHH--HTCCEEEEECSSSSHHHHHHHHHHHHHHHHT-CCCCEEEE-SCG----GGGTTCS
T ss_pred             CCCEEEEECCCHHHHHHHHHHHh--CCCceEEEEeCCchHHHHHHHHHHhhhhhcC-CCcEEEEC-CCH----HHhCCCC
Confidence            45799999999988764443331  455 899999999877752 222221   22 12345432 343    3456789


Q ss_pred             eeehhhhc----cC--------ChhHHHHHHHHHHhhccCCcEEEEee
Q 042119          205 CIFLAALV----GM--------SKEEKLTILGHIRKYMKDGGILLVRS  240 (286)
Q Consensus       205 ~V~~aalv----g~--------~~~~k~~vl~~l~~~l~pgg~lv~r~  240 (286)
                      +|+++.-+    |+        +.+.+.++++.+.++ .|++.+++-+
T Consensus        75 iVi~avg~p~~~g~~r~d~~~~~~~i~~~i~~~i~~~-~~~~iii~~s  121 (317)
T 2ewd_A           75 VVIITASIPGRPKDDRSELLFGNARILDSVAEGVKKY-CPNAFVICIT  121 (317)
T ss_dssp             EEEECCCCSSCCSSCGGGGHHHHHHHHHHHHHHHHHH-CTTSEEEECC
T ss_pred             EEEEeCCCCCCCCCcHHHHHHhhHHHHHHHHHHHHHH-CCCcEEEEeC
Confidence            99988632    11        124477888888887 5788776643

>3r24_A NSP16, 2'-O-methyl transferase; methyltransferase, zinc-finger, transferase, viral protein; HET: SAM; 2.00A {Sars coronavirus}

Probab=96.14  E-value=0.03  Score=51.40  Aligned_cols=99  Identities=20%  Similarity=0.261  Sum_probs=65.2

Q ss_pred             CCCCCEEEEecc----CCChhhHHHHHhhcCC-CcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEccccchhhcCCC
Q 042119          128 VVQPKKVAFVGS----GPMPLTSIIMAKHHLT-STHFDNFDIDEAANDVARSIVASDAEFEGRMKFLTRDIMEVKEQLGE  202 (286)
Q Consensus       128 ~~~~~~VL~IG~----G~lp~tai~lA~~~~~-g~~V~~iDid~~ai~~Ar~~~~~~g~l~~~i~f~~~D~~~~~~~l~~  202 (286)
                      +..+++||++|+    |.-|-| ..+.+. .+ |+.|+++|+.|-..         .    .. .+++||..++.. -+.
T Consensus       107 vp~gmrVLDLGA~s~kg~APGS-~VLr~~-~p~g~~VVavDL~~~~s---------d----a~-~~IqGD~~~~~~-~~k  169 (344)
T 3r24_A          107 VPYNMRVIHFGAGSDKGVAPGT-AVLRQW-LPTGTLLVDSDLNDFVS---------D----AD-STLIGDCATVHT-ANK  169 (344)
T ss_dssp             CCTTCEEEEESCCCTTSBCHHH-HHHHHH-SCTTCEEEEEESSCCBC---------S----SS-EEEESCGGGEEE-SSC
T ss_pred             ecCCCEEEeCCCCCCCCCCCcH-HHHHHh-CCCCcEEEEeeCccccc---------C----CC-eEEEcccccccc-CCC
Confidence            478899999996    334555 455553 56 47999999986321         1    12 569999765443 257


Q ss_pred             cceeehhh---hccCChh-------HHHHHHHHHHhhccCCcEEEEeecCc
Q 042119          203 YDCIFLAA---LVGMSKE-------EKLTILGHIRKYMKDGGILLVRSAKG  243 (286)
Q Consensus       203 fD~V~~aa---lvg~~~~-------~k~~vl~~l~~~l~pgg~lv~r~~~g  243 (286)
                      ||+|+-+.   +-|....       -=+.+++-..++|+|||.+++.-..|
T Consensus       170 ~DLVISDMAPNtTG~~D~d~~Rs~~L~ElALdfA~~~LkpGGsFvVKVFQG  220 (344)
T 3r24_A          170 WDLIISDMYDPRTKHVTKENDSKEGFFTYLCGFIKQKLALGGSIAVKITEH  220 (344)
T ss_dssp             EEEEEECCCCTTSCSSCSCCCCCCTHHHHHHHHHHHHEEEEEEEEEEECSS
T ss_pred             CCEEEecCCCCcCCccccchhHHHHHHHHHHHHHHHhCcCCCEEEEEEecC
Confidence            99998543   2233111       13445666777999999999987554

>1g60_A Adenine-specific methyltransferase MBOIIA; structural genomics, DNA methylation, S- adenosylmethionine, PSI, protein structure initiative; HET: SAM; 1.74A {Moraxella bovis} SCOP: c.66.1.11

Probab=96.12  E-value=0.0098  Score=52.69  Aligned_cols=48  Identities=17%  Similarity=0.088  Sum_probs=41.1

Q ss_pred             CCCCEEEEeccCCChhhHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcC
Q 042119          129 VQPKKVAFVGSGPMPLTSIIMAKHHLTSTHFDNFDIDEAANDVARSIVASDA  180 (286)
Q Consensus       129 ~~~~~VL~IG~G~lp~tai~lA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~g  180 (286)
                      .++..|||..||. |.|++..++   .|.+++|+|+++.+++.|++.++..+
T Consensus       211 ~~~~~vlD~f~Gs-Gtt~~~a~~---~gr~~ig~e~~~~~~~~~~~r~~~~~  258 (260)
T 1g60_A          211 NPNDLVLDCFMGS-GTTAIVAKK---LGRNFIGCDMNAEYVNQANFVLNQLE  258 (260)
T ss_dssp             CTTCEEEESSCTT-CHHHHHHHH---TTCEEEEEESCHHHHHHHHHHHHC--
T ss_pred             CCCCEEEECCCCC-CHHHHHHHH---cCCeEEEEeCCHHHHHHHHHHHHhcc
Confidence            6789999999995 778777666   78999999999999999999988765

>3lk7_A UDP-N-acetylmuramoylalanine--D-glutamate ligase; agalacitae, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: MSE; 1.50A {Streptococcus agalactiae}

Probab=96.10  E-value=0.03  Score=53.52  Aligned_cols=75  Identities=12%  Similarity=0.057  Sum_probs=50.8

Q ss_pred             CCCEEEEeccCCChhhHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEccccchhhcCCC-cceeeh
Q 042119          130 QPKKVAFVGSGPMPLTSIIMAKHHLTSTHFDNFDIDEAANDVARSIVASDAEFEGRMKFLTRDIMEVKEQLGE-YDCIFL  208 (286)
Q Consensus       130 ~~~~VL~IG~G~lp~tai~lA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~g~l~~~i~f~~~D~~~~~~~l~~-fD~V~~  208 (286)
                      .+++|++||-|..|+++..+..+  .|.+|++.|..+.......+.+++.|     +++..+...+  ..+.+ +|+|+.
T Consensus         8 ~~k~v~viG~G~sG~s~A~~l~~--~G~~V~~~D~~~~~~~~~~~~L~~~g-----i~~~~g~~~~--~~~~~~~d~vv~   78 (451)
T 3lk7_A            8 ENKKVLVLGLARSGEAAARLLAK--LGAIVTVNDGKPFDENPTAQSLLEEG-----IKVVCGSHPL--ELLDEDFCYMIK   78 (451)
T ss_dssp             TTCEEEEECCTTTHHHHHHHHHH--TTCEEEEEESSCGGGCHHHHHHHHTT-----CEEEESCCCG--GGGGSCEEEEEE
T ss_pred             CCCEEEEEeeCHHHHHHHHHHHh--CCCEEEEEeCCcccCChHHHHHHhCC-----CEEEECCChH--HhhcCCCCEEEE
Confidence            57899999999999987766653  89999999996532111223455566     5677665422  12234 999998


Q ss_pred             hhhcc
Q 042119          209 AALVG  213 (286)
Q Consensus       209 aalvg  213 (286)
                      +..+.
T Consensus        79 spgi~   83 (451)
T 3lk7_A           79 NPGIP   83 (451)
T ss_dssp             CTTSC
T ss_pred             CCcCC
Confidence            76663

>2px2_A Genome polyprotein [contains: capsid protein C (core protein); envelope protein M...; methyltransferase, SAH; HET: SAH; 2.00A {Murray valley encephalitis virus} PDB: 2px4_A* 2px5_A* 2pxa_A* 2pxc_A* 2px8_A* 2oy0_A*

Probab=96.07  E-value=0.017  Score=51.96  Aligned_cols=136  Identities=11%  Similarity=0.096  Sum_probs=76.7

Q ss_pred             hcCCCCCCEEEEeccCCChhhHHHHHhhcCCC-cEEEEEeCChHHHHHHHHHHHhcCCCC---CCe---EEEEc-cccch
Q 042119          125 ENGVVQPKKVAFVGSGPMPLTSIIMAKHHLTS-THFDNFDIDEAANDVARSIVASDAEFE---GRM---KFLTR-DIMEV  196 (286)
Q Consensus       125 ~~~~~~~~~VL~IG~G~lp~tai~lA~~~~~g-~~V~~iDid~~ai~~Ar~~~~~~g~l~---~~i---~f~~~-D~~~~  196 (286)
                      +..++++.+|+|+||+|+|-|-. .++  ..+ ..|.|.++..+-        ...+ ..   ..+   +|..+ |+.++
T Consensus        68 K~likpg~~VVDLGaAPGGWSQv-Aa~--~~~vg~V~G~vig~D~--------~~~P-~~~~~~Gv~~i~~~~G~Df~~~  135 (269)
T 2px2_A           68 RRFVQPIGKVVDLGCGRGGWSYY-AAT--MKNVQEVRGYTKGGPG--------HEEP-MLMQSYGWNIVTMKSGVDVFYK  135 (269)
T ss_dssp             TTSCCCCEEEEEETCTTSHHHHH-HTT--STTEEEEEEECCCSTT--------SCCC-CCCCSTTGGGEEEECSCCGGGS
T ss_pred             cCCCCCCCEEEEcCCCCCHHHHH-Hhh--hcCCCCceeEEEcccc--------ccCC-CcccCCCceEEEeeccCCccCC
Confidence            44568999999999999998744 333  222 233444443320        0011 11   233   55557 98763


Q ss_pred             hhcCCCcceeehhhh--ccCChhHH---HHHHHHHHhhccCCc-EEEEeecCccee-e---------------ecccCCc
Q 042119          197 KEQLGEYDCIFLAAL--VGMSKEEK---LTILGHIRKYMKDGG-ILLVRSAKGARA-F---------------LYPVVVE  254 (286)
Q Consensus       197 ~~~l~~fD~V~~aal--vg~~~~~k---~~vl~~l~~~l~pgg-~lv~r~~~g~r~-~---------------lyp~v~~  254 (286)
                      .  -..+|+|+.+..  -|...-+-   ..+|+-..+.|+||| -+++.--+|... |               .-|+...
T Consensus       136 ~--~~~~DvVLSDMAPnSG~~~vD~~Rs~~aL~~A~~~Lk~gG~~FvvKVFqg~~~~~~~~l~~lk~~F~~vkvk~paSR  213 (269)
T 2px2_A          136 P--SEISDTLLCDIGESSPSAEIEEQRTLRILEMVSDWLSRGPKEFCIKILCPYMPKVIEKLESLQRRFGGGLVRVPLSR  213 (269)
T ss_dssp             C--CCCCSEEEECCCCCCSCHHHHHHHHHHHHHHHHHHHTTCCSEEEEEESCTTSHHHHHHHHHHHHHHCCEEECCTTSC
T ss_pred             C--CCCCCEEEeCCCCCCCccHHHHHHHHHHHHHHHHHhhcCCcEEEEEECCCCchHHHHHHHHHHHHcCCEEEECCCCC
Confidence            2  236999996542  12211121   135666778999999 898875444111 1               1222111


Q ss_pred             ccccCcEEEEEecCcccceeee
Q 042119          255 HDLLDFEVLSAVHPNDDVINSV  276 (286)
Q Consensus       255 ~~l~gf~~~~~~~P~~~vinsv  276 (286)
                      +  ...|++.+....+.++|+|
T Consensus       214 ~--~S~E~YlVa~~~~n~~~~v  233 (269)
T 2px2_A          214 N--SNHEMYWVSGASGNIVHAV  233 (269)
T ss_dssp             T--TCCCEEEETTCCSCHHHHH
T ss_pred             C--CCccEEEEecccCcHHHHH
Confidence            1  2467777777777777776

>3tri_A Pyrroline-5-carboxylate reductase; amino acid biosynthesis, oxidoreductase; HET: NAP; 2.50A {Coxiella burnetii}

Probab=96.05  E-value=0.012  Score=52.75  Aligned_cols=93  Identities=13%  Similarity=0.175  Sum_probs=61.4

Q ss_pred             CCEEEEeccCCChhhHHH-HHhhcCCCc---EEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEccccchhhcCCCccee
Q 042119          131 PKKVAFVGSGPMPLTSII-MAKHHLTST---HFDNFDIDEAANDVARSIVASDAEFEGRMKFLTRDIMEVKEQLGEYDCI  206 (286)
Q Consensus       131 ~~~VL~IG~G~lp~tai~-lA~~~~~g~---~V~~iDid~~ai~~Ar~~~~~~g~l~~~i~f~~~D~~~~~~~l~~fD~V  206 (286)
                      .++|.+||+|.+|.+-.. +++   .|.   +|+.+|++++..+..++   ..|     +++ +.|..+   ...+.|+|
T Consensus         3 ~~~I~iIG~G~mG~aia~~l~~---~g~~~~~V~v~dr~~~~~~~l~~---~~g-----i~~-~~~~~~---~~~~aDvV   67 (280)
T 3tri_A            3 TSNITFIGGGNMARNIVVGLIA---NGYDPNRICVTNRSLDKLDFFKE---KCG-----VHT-TQDNRQ---GALNADVV   67 (280)
T ss_dssp             CSCEEEESCSHHHHHHHHHHHH---TTCCGGGEEEECSSSHHHHHHHH---TTC-----CEE-ESCHHH---HHSSCSEE
T ss_pred             CCEEEEEcccHHHHHHHHHHHH---CCCCCCeEEEEeCCHHHHHHHHH---HcC-----CEE-eCChHH---HHhcCCeE
Confidence            368999999988865333 333   344   89999999987665544   245     233 234322   33578999


Q ss_pred             ehhhhccCChhHHHHHHHHHHhh-ccCCcEEEEeecCc
Q 042119          207 FLAALVGMSKEEKLTILGHIRKY-MKDGGILLVRSAKG  243 (286)
Q Consensus       207 ~~aalvg~~~~~k~~vl~~l~~~-l~pgg~lv~r~~~g  243 (286)
                      +++.    +.....++++++.+. ++++.+++ ....|
T Consensus        68 ilav----~p~~~~~vl~~l~~~~l~~~~iii-S~~ag  100 (280)
T 3tri_A           68 VLAV----KPHQIKMVCEELKDILSETKILVI-SLAVG  100 (280)
T ss_dssp             EECS----CGGGHHHHHHHHHHHHHTTTCEEE-ECCTT
T ss_pred             EEEe----CHHHHHHHHHHHHhhccCCCeEEE-EecCC
Confidence            9875    236778899999998 87775554 33344

>2cvz_A Dehydrogenase, 3-hydroxyisobutyrate dehydrogenase; valine catabolism, NADP+, structural GEN riken structural genomics/proteomics initiative; HET: NDP; 1.80A {Thermus thermophilus} SCOP: a.100.1.1 c.2.1.6 PDB: 1wp4_A*

Probab=96.05  E-value=0.015  Score=51.51  Aligned_cols=88  Identities=16%  Similarity=0.106  Sum_probs=57.9

Q ss_pred             CEEEEeccCCChhhHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEccccchhhcCCCcceeehhhh
Q 042119          132 KKVAFVGSGPMPLTSIIMAKHHLTSTHFDNFDIDEAANDVARSIVASDAEFEGRMKFLTRDIMEVKEQLGEYDCIFLAAL  211 (286)
Q Consensus       132 ~~VL~IG~G~lp~tai~lA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~g~l~~~i~f~~~D~~~~~~~l~~fD~V~~aal  211 (286)
                      ++|.+||+|.+|........  . |.+|+.+|++++..+..++.    |.   .  ..  +..+   ...++|+|+++.-
T Consensus         2 ~~i~iiG~G~~G~~~a~~l~--~-g~~V~~~~~~~~~~~~~~~~----g~---~--~~--~~~~---~~~~~D~vi~~v~   64 (289)
T 2cvz_A            2 EKVAFIGLGAMGYPMAGHLA--R-RFPTLVWNRTFEKALRHQEE----FG---S--EA--VPLE---RVAEARVIFTCLP   64 (289)
T ss_dssp             CCEEEECCSTTHHHHHHHHH--T-TSCEEEECSSTHHHHHHHHH----HC---C--EE--CCGG---GGGGCSEEEECCS
T ss_pred             CeEEEEcccHHHHHHHHHHh--C-CCeEEEEeCCHHHHHHHHHC----CC---c--cc--CHHH---HHhCCCEEEEeCC
Confidence            47999999999876443333  4 78999999999887665442    52   1  11  1212   2346899997643


Q ss_pred             ccCChhHHHHHHHHHHhhccCCcEEEEe
Q 042119          212 VGMSKEEKLTILGHIRKYMKDGGILLVR  239 (286)
Q Consensus       212 vg~~~~~k~~vl~~l~~~l~pgg~lv~r  239 (286)
                      -   ...-..+++.+.+.+++|..++.-
T Consensus        65 ~---~~~~~~v~~~l~~~l~~~~~vv~~   89 (289)
T 2cvz_A           65 T---TREVYEVAEALYPYLREGTYWVDA   89 (289)
T ss_dssp             S---HHHHHHHHHHHTTTCCTTEEEEEC
T ss_pred             C---hHHHHHHHHHHHhhCCCCCEEEEC
Confidence            1   122445778888889998877754

>3gvp_A Adenosylhomocysteinase 3; protein CO-factor complex, hydrolase, NAD, one-carbon metabolism, phosphoprotein; HET: NAD; 2.25A {Homo sapiens} PDB: 3mtg_A*

Probab=96.04  E-value=0.0067  Score=58.31  Aligned_cols=111  Identities=16%  Similarity=0.134  Sum_probs=71.3

Q ss_pred             ccchhhhhHHHHHHHHhcC--CCCCCEEEEeccCCChhhHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCe
Q 042119          109 YGNYVKLSKLEYTILSENG--VVQPKKVAFVGSGPMPLTSIIMAKHHLTSTHFDNFDIDEAANDVARSIVASDAEFEGRM  186 (286)
Q Consensus       109 ~~ny~~l~~~E~~~l~~~~--~~~~~~VL~IG~G~lp~tai~lA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~g~l~~~i  186 (286)
                      |+|...+.+--...+.+..  .-.+++|+.+|.|++|......++.  .|++|+++|++|.....|.    ..| .    
T Consensus       196 fDn~yGt~~s~~~gi~rat~~~L~GktV~ViG~G~IGk~vA~~Lra--~Ga~Viv~D~dp~ra~~A~----~~G-~----  264 (435)
T 3gvp_A          196 FDNLYCCRESILDGLKRTTDMMFGGKQVVVCGYGEVGKGCCAALKA--MGSIVYVTEIDPICALQAC----MDG-F----  264 (435)
T ss_dssp             HHTHHHHHHHHHHHHHHHHCCCCTTCEEEEECCSHHHHHHHHHHHH--TTCEEEEECSCHHHHHHHH----HTT-C----
T ss_pred             hhhhhhhHHHHHHHHHHhhCceecCCEEEEEeeCHHHHHHHHHHHH--CCCEEEEEeCChhhhHHHH----HcC-C----
Confidence            3554444444444554442  3578999999999999998888884  6999999999997544433    345 1    


Q ss_pred             EEEEccccchhhcCCCcceeehhhhccCChhHHHHHH-HHHHhhccCCcEEEEeecCc
Q 042119          187 KFLTRDIMEVKEQLGEYDCIFLAALVGMSKEEKLTIL-GHIRKYMKDGGILLVRSAKG  243 (286)
Q Consensus       187 ~f~~~D~~~~~~~l~~fD~V~~aalvg~~~~~k~~vl-~~l~~~l~pgg~lv~r~~~g  243 (286)
                      +  ..+   +...+...|+|+.+.-      .+ .++ .+..+.||||++|+-- ++|
T Consensus       265 ~--v~~---Leeal~~ADIVi~atg------t~-~lI~~e~l~~MK~gailINv-grg  309 (435)
T 3gvp_A          265 R--LVK---LNEVIRQVDIVITCTG------NK-NVVTREHLDRMKNSCIVCNM-GHS  309 (435)
T ss_dssp             E--ECC---HHHHTTTCSEEEECSS------CS-CSBCHHHHHHSCTTEEEEEC-SST
T ss_pred             E--ecc---HHHHHhcCCEEEECCC------Cc-ccCCHHHHHhcCCCcEEEEe-cCC
Confidence            2  223   3344567899988521      11 122 2566788999876654 444

>3ktd_A Prephenate dehydrogenase; structural genomics, joint center F structural genomics, JCSG, protein structure initiative; 2.60A {Corynebacterium glutamicum atcc 13032}

Probab=96.04  E-value=0.0082  Score=55.87  Aligned_cols=91  Identities=12%  Similarity=0.133  Sum_probs=60.5

Q ss_pred             CCEEEEeccCCChhhHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEccccchhhc-CCCcceeehh
Q 042119          131 PKKVAFVGSGPMPLTSIIMAKHHLTSTHFDNFDIDEAANDVARSIVASDAEFEGRMKFLTRDIMEVKEQ-LGEYDCIFLA  209 (286)
Q Consensus       131 ~~~VL~IG~G~lp~tai~lA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~g~l~~~i~f~~~D~~~~~~~-l~~fD~V~~a  209 (286)
                      .++|.+||+|.+|.+-....+  ..|.+|+++|.+++..+.+++    .| .  .  . +.|..+.... ..+.|+|+++
T Consensus         8 ~~kIgIIG~G~mG~slA~~L~--~~G~~V~~~dr~~~~~~~a~~----~G-~--~--~-~~~~~e~~~~a~~~aDlVila   75 (341)
T 3ktd_A            8 SRPVCILGLGLIGGSLLRDLH--AANHSVFGYNRSRSGAKSAVD----EG-F--D--V-SADLEATLQRAAAEDALIVLA   75 (341)
T ss_dssp             SSCEEEECCSHHHHHHHHHHH--HTTCCEEEECSCHHHHHHHHH----TT-C--C--E-ESCHHHHHHHHHHTTCEEEEC
T ss_pred             CCEEEEEeecHHHHHHHHHHH--HCCCEEEEEeCCHHHHHHHHH----cC-C--e--e-eCCHHHHHHhcccCCCEEEEe
Confidence            468999999998876433333  257899999999998877654    56 2  1  1 3444332221 1247999987


Q ss_pred             hhccCChhHHHHHHHHHHhhccCCcEEEE
Q 042119          210 ALVGMSKEEKLTILGHIRKYMKDGGILLV  238 (286)
Q Consensus       210 alvg~~~~~k~~vl~~l~~~l~pgg~lv~  238 (286)
                      .-.    .....+++++... +||.+|+-
T Consensus        76 vP~----~~~~~vl~~l~~~-~~~~iv~D   99 (341)
T 3ktd_A           76 VPM----TAIDSLLDAVHTH-APNNGFTD   99 (341)
T ss_dssp             SCH----HHHHHHHHHHHHH-CTTCCEEE
T ss_pred             CCH----HHHHHHHHHHHcc-CCCCEEEE
Confidence            533    4566788888875 88866543

>3vtf_A UDP-glucose 6-dehydrogenase; two discrete alpha/beta domains, oxidoreducta; HET: UPG; 2.00A {Pyrobaculum islandicum}

Probab=96.03  E-value=0.0099  Score=57.35  Aligned_cols=101  Identities=14%  Similarity=0.211  Sum_probs=64.6

Q ss_pred             CEEEEeccCCChh-hHHHHHhhcCCCcEEEEEeCChHHHHHHHH------------HHHhcCCCCCCeEEEEccccchhh
Q 042119          132 KKVAFVGSGPMPL-TSIIMAKHHLTSTHFDNFDIDEAANDVARS------------IVASDAEFEGRMKFLTRDIMEVKE  198 (286)
Q Consensus       132 ~~VL~IG~G~lp~-tai~lA~~~~~g~~V~~iDid~~ai~~Ar~------------~~~~~g~l~~~i~f~~~D~~~~~~  198 (286)
                      .+|..||.|=.|+ ++.+||+   .|.+|+|+|+|++.++.-++            ++++.- -+.+.+|. .|..   .
T Consensus        22 ~~IaViGlGYVGLp~A~~~A~---~G~~V~g~Did~~kV~~ln~G~~pi~Epgl~ell~~~~-~~g~l~~t-t~~~---~   93 (444)
T 3vtf_A           22 ASLSVLGLGYVGVVHAVGFAL---LGHRVVGYDVNPSIVERLRAGRPHIYEPGLEEALGRAL-SSGRLSFA-ESAE---E   93 (444)
T ss_dssp             CEEEEECCSHHHHHHHHHHHH---HTCEEEEECSCHHHHHHHHTTCCSSCCTTHHHHHHHHH-HTTCEEEC-SSHH---H
T ss_pred             CEEEEEccCHHHHHHHHHHHh---CCCcEEEEECCHHHHHHHHCCCCCCCCCCHHHHHHHHH-HcCCeeEE-cCHH---H
Confidence            5899999998887 4567776   68999999999999876532            222210 12356663 3332   2


Q ss_pred             cCCCcceeehhhhcc------CChhHHHHHHHHHHhhccC---CcEEEEee
Q 042119          199 QLGEYDCIFLAALVG------MSKEEKLTILGHIRKYMKD---GGILLVRS  240 (286)
Q Consensus       199 ~l~~fD~V~~aalvg------~~~~~k~~vl~~l~~~l~p---gg~lv~r~  240 (286)
                      .+...|++|++.-..      .+...-..+.+.+.+.|++   |.+++++|
T Consensus        94 ai~~ad~~~I~VpTP~~~d~~~Dl~~v~~a~~~I~~~l~~~~~g~lVV~eS  144 (444)
T 3vtf_A           94 AVAATDATFIAVGTPPAPDGSADLRYVEAAARAVGRGIRAKGRWHLVVVKS  144 (444)
T ss_dssp             HHHTSSEEEECCCCCBCTTSSBCCHHHHHHHHHHHHHHHHHCSCCEEEECS
T ss_pred             HHhcCCceEEEecCCCCCCCCCCcHHHHHHHHHHHHHHhhcCCCeEEEEeC
Confidence            234678888764211      1122345677888888875   55777776

>3eld_A Methyltransferase; flavivirus, RNA capping, guanylyltransfer viral enzyme structure; HET: SFG; 1.90A {Wesselsbron virus} PDB: 3elu_A* 3elw_A* 3ely_A* 3emb_A* 3emd_A*

Probab=96.03  E-value=0.0087  Score=54.76  Aligned_cols=121  Identities=10%  Similarity=0.100  Sum_probs=67.0

Q ss_pred             chhhhhHHHHHHHHhcCCCCCCEEEEeccCCChhhHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEE
Q 042119          111 NYVKLSKLEYTILSENGVVQPKKVAFVGSGPMPLTSIIMAKHHLTSTHFDNFDIDEAANDVARSIVASDAEFEGRMKFLT  190 (286)
Q Consensus       111 ny~~l~~~E~~~l~~~~~~~~~~VL~IG~G~lp~tai~lA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~g~l~~~i~f~~  190 (286)
                      -+.+|.+..    .+....++++|+|+||+|+|.|-..+.+  .+-..|+|+|+........+. +...+.  +-+.+.+
T Consensus        66 aa~KL~ei~----ek~l~~~g~~vlDLGaaPGgWsqva~~~--~gv~sV~Gvdlg~~~~~~P~~-~~~~~~--~iv~~~~  136 (300)
T 3eld_A           66 GAAKIRWLH----ERGYLRITGRVLDLGCGRGGWSYYAAAQ--KEVMSVKGYTLGIEGHEKPIH-MQTLGW--NIVKFKD  136 (300)
T ss_dssp             THHHHHHHH----HHTSCCCCEEEEEETCTTCHHHHHHHTS--TTEEEEEEECCCCTTSCCCCC-CCBTTG--GGEEEEC
T ss_pred             HHHHHHHHH----HhCCCCCCCEEEEcCCCCCHHHHHHHHh--cCCceeeeEEecccccccccc-ccccCC--ceEEeec
Confidence            344555543    2223478899999999999998665543  244579999997532100000 001110  2233332


Q ss_pred             c-cccchhhcCCCcceeehhhh--ccCChhH---HHHHHHHHHhhccCC-cEEEEeecC
Q 042119          191 R-DIMEVKEQLGEYDCIFLAAL--VGMSKEE---KLTILGHIRKYMKDG-GILLVRSAK  242 (286)
Q Consensus       191 ~-D~~~~~~~l~~fD~V~~aal--vg~~~~~---k~~vl~~l~~~l~pg-g~lv~r~~~  242 (286)
                      + |+..+.  -..||+|+.+..  .|...-+   -..+|+-..+.|+|| |.+++.-..
T Consensus       137 ~~di~~l~--~~~~DlVlsD~APnsG~~~~D~~rs~~LL~~A~~~LkpG~G~FV~KvF~  193 (300)
T 3eld_A          137 KSNVFTMP--TEPSDTLLCDIGESSSNPLVERDRTMKVLENFERWKHVNTENFCVKVLA  193 (300)
T ss_dssp             SCCTTTSC--CCCCSEEEECCCCCCSSHHHHHHHHHHHHHHHHHHCCTTCCEEEEEESS
T ss_pred             CceeeecC--CCCcCEEeecCcCCCCCHHHHHHHHHHHHHHHHHHhcCCCCcEEEEecc
Confidence            2 332221  246999986532  1221111   134566678899999 999997644

>1m6e_X S-adenosyl-L-methionnine:salicylic acid carboxyl methyltransferase; rossmann fold, protein-small molecule complex; HET: SAH SAL; 3.00A {Clarkia breweri} SCOP: c.66.1.35

Probab=96.02  E-value=0.0097  Score=55.86  Aligned_cols=110  Identities=9%  Similarity=-0.016  Sum_probs=73.2

Q ss_pred             CCCEEEEeccCCChhhHHHHHh-------------h-cCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEccccc
Q 042119          130 QPKKVAFVGSGPMPLTSIIMAK-------------H-HLTSTHFDNFDIDEAANDVARSIVASDAEFEGRMKFLTRDIME  195 (286)
Q Consensus       130 ~~~~VL~IG~G~lp~tai~lA~-------------~-~~~g~~V~~iDid~~ai~~Ar~~~~~~g~l~~~i~f~~~D~~~  195 (286)
                      .+-+|+|+||+.+|-|...+..             + ..|..+|..-|.-...-...-+.+.... -..+--|+.|....
T Consensus        51 ~~~~IaDlGCs~G~Nt~~~v~~ii~~i~~~~~~~~~~~~pe~~v~~nDLp~NDFntlF~~L~~~~-~~~~~~f~~gvpgS  129 (359)
T 1m6e_X           51 TRLAIADLGCSSGPNALFAVTELIKTVEELRKKMGRENSPEYQIFLNDLPGNDFNAIFRSLPIEN-DVDGVCFINGVPGS  129 (359)
T ss_dssp             SEECCEEESCCSSTTTTTGGGTTHHHHHHHHHSSSCSSCCEEEEEEEECTTSCHHHHHTTTTTSC-SCTTCEEEEEEESC
T ss_pred             CceEEEecCCCCCcchHHHHHHHHHHHHHHHHhcCCCCCCceEEEecCCCchHHHHHHHhcchhc-ccCCCEEEEecchh
Confidence            4578999999988877654443             0 2467889999988776665555433211 01245788887665


Q ss_pred             ---hhhcCCCcceeehhhhccCCh--------------------------------hHHHHHHHHHHhhccCCcEEEEee
Q 042119          196 ---VKEQLGEYDCIFLAALVGMSK--------------------------------EEKLTILGHIRKYMKDGGILLVRS  240 (286)
Q Consensus       196 ---~~~~l~~fD~V~~aalvg~~~--------------------------------~~k~~vl~~l~~~l~pgg~lv~r~  240 (286)
                         .+.+-+.+|+||-.+.++|-.                                .+-..+|+..++.|+|||++++..
T Consensus       130 Fy~rlfp~~S~d~v~Ss~aLHWls~~p~~l~~nkg~i~~~~~~p~~v~~ay~~Qf~~D~~~FL~~Ra~EL~pGG~mvl~~  209 (359)
T 1m6e_X          130 FYGRLFPRNTLHFIHSSYSLMWLSQVPIGIESNKGNIYMANTCPQSVLNAYYKQFQEDHALFLRCRAQEVVPGGRMVLTI  209 (359)
T ss_dssp             SSSCCSCTTCBSCEEEESCTTBCSSCCSCCCCCTTTTSSCSSSCCTTSCCSHHHHHHHHHHHHHHHHHHBCTTCEEEEEE
T ss_pred             hhhccCCCCceEEEEehhhhhhcccCchhhhccCCceEecCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCceEEEEE
Confidence               344456899998665444411                                123456999999999999998864

>3g0o_A 3-hydroxyisobutyrate dehydrogenase; NAD(P), valine catabolism, tartaric acid, target 11128H, NYSGXRC, PSI-2, structural genomics; HET: TLA; 1.80A {Salmonella typhimurium}

Probab=96.01  E-value=0.01  Score=53.54  Aligned_cols=93  Identities=17%  Similarity=0.180  Sum_probs=60.3

Q ss_pred             CCCEEEEeccCCChhhHH-HHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEccccchhhcCCCcceeeh
Q 042119          130 QPKKVAFVGSGPMPLTSI-IMAKHHLTSTHFDNFDIDEAANDVARSIVASDAEFEGRMKFLTRDIMEVKEQLGEYDCIFL  208 (286)
Q Consensus       130 ~~~~VL~IG~G~lp~tai-~lA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~g~l~~~i~f~~~D~~~~~~~l~~fD~V~~  208 (286)
                      ..++|.+||+|.+|.... .|++   .|.+|+++|++++.++...+    .|.   .  ..+.|..+   .....|+|++
T Consensus         6 ~~~~I~iIG~G~mG~~~a~~l~~---~G~~V~~~dr~~~~~~~~~~----~g~---~--~~~~~~~e---~~~~aDvvi~   70 (303)
T 3g0o_A            6 TDFHVGIVGLGSMGMGAARSCLR---AGLSTWGADLNPQACANLLA----EGA---C--GAAASARE---FAGVVDALVI   70 (303)
T ss_dssp             -CCEEEEECCSHHHHHHHHHHHH---TTCEEEEECSCHHHHHHHHH----TTC---S--EEESSSTT---TTTTCSEEEE
T ss_pred             CCCeEEEECCCHHHHHHHHHHHH---CCCeEEEEECCHHHHHHHHH----cCC---c--cccCCHHH---HHhcCCEEEE
Confidence            347899999999887533 3344   68899999999988776544    352   1  12334322   2356899997


Q ss_pred             hhhccCChhHHHHHH---HHHHhhccCCcEEEEee
Q 042119          209 AALVGMSKEEKLTIL---GHIRKYMKDGGILLVRS  240 (286)
Q Consensus       209 aalvg~~~~~k~~vl---~~l~~~l~pgg~lv~r~  240 (286)
                      +.--   ...-..++   +.+.+.++||.+++..+
T Consensus        71 ~vp~---~~~~~~v~~~~~~l~~~l~~g~ivv~~s  102 (303)
T 3g0o_A           71 LVVN---AAQVRQVLFGEDGVAHLMKPGSAVMVSS  102 (303)
T ss_dssp             CCSS---HHHHHHHHC--CCCGGGSCTTCEEEECS
T ss_pred             ECCC---HHHHHHHHhChhhHHhhCCCCCEEEecC
Confidence            6421   12233455   66778899998887654

>2o3j_A UDP-glucose 6-dehydrogenase; structural genomics, PSI-2, prote structure initiative, NEW YORK SGX research center for STRU genomics; 1.88A {Caenorhabditis elegans}

Probab=96.01  E-value=0.021  Score=55.26  Aligned_cols=102  Identities=21%  Similarity=0.218  Sum_probs=65.5

Q ss_pred             CEEEEeccCCChhh-HHHHHhhcCCCcEEEEEeCChHHHHHHHHH------------HHhcCCCCCCeEEEEccccchhh
Q 042119          132 KKVAFVGSGPMPLT-SIIMAKHHLTSTHFDNFDIDEAANDVARSI------------VASDAEFEGRMKFLTRDIMEVKE  198 (286)
Q Consensus       132 ~~VL~IG~G~lp~t-ai~lA~~~~~g~~V~~iDid~~ai~~Ar~~------------~~~~g~l~~~i~f~~~D~~~~~~  198 (286)
                      ++|.+||+|.+|.+ +..|++ ..+|.+|+++|++++.++..++-            +....  ..++++ +.|..+   
T Consensus        10 mkI~VIG~G~vG~~~A~~La~-~g~g~~V~~~D~~~~~v~~l~~g~~~i~e~gl~~~~~~~~--~~~l~~-t~~~~~---   82 (481)
T 2o3j_A           10 SKVVCVGAGYVGGPTCAMIAH-KCPHITVTVVDMNTAKIAEWNSDKLPIYEPGLDEIVFAAR--GRNLFF-SSDIPK---   82 (481)
T ss_dssp             CEEEEECCSTTHHHHHHHHHH-HCTTSEEEEECSCHHHHHHHTSSSCSSCCTTHHHHHHHHB--TTTEEE-ESCHHH---
T ss_pred             CEEEEECCCHHHHHHHHHHHh-cCCCCEEEEEECCHHHHHHHHCCCCCcCCCCHHHHHHHhh--cCCEEE-ECCHHH---
Confidence            69999999999976 455666 23478999999999988765431            11100  123444 233322   


Q ss_pred             cCCCcceeehhhhccC-----------ChhHHHHHHHHHHhhccCCcEEEEee
Q 042119          199 QLGEYDCIFLAALVGM-----------SKEEKLTILGHIRKYMKDGGILLVRS  240 (286)
Q Consensus       199 ~l~~fD~V~~aalvg~-----------~~~~k~~vl~~l~~~l~pgg~lv~r~  240 (286)
                      .....|+||++.--..           +...-..+++.+.+.++||.+++..+
T Consensus        83 ~~~~aDvvii~Vptp~~~~g~~~~~~~dl~~v~~~~~~i~~~l~~g~iVV~~S  135 (481)
T 2o3j_A           83 AIAEADLIFISVNTPTKMYGRGKGMAPDLKYVESVSRTIAQYAGGPKIVVEKS  135 (481)
T ss_dssp             HHHHCSEEEECCCCCBCCSSTTTTTSBCCHHHHHHHHHHHHHCCSCEEEEECS
T ss_pred             HhhcCCEEEEecCCccccccccccCCCcHHHHHHHHHHHHHhCCCCCEEEECC
Confidence            2235799998742110           11235678899999999998888754

>3n58_A Adenosylhomocysteinase; ssgcid, hydrolase, structural genomics, seattle structural G center for infectious disease; HET: ADN NAD; 2.39A {Brucella melitensis biovar abortus}

Probab=96.00  E-value=0.0056  Score=59.18  Aligned_cols=113  Identities=14%  Similarity=0.050  Sum_probs=74.0

Q ss_pred             CccchhhhhHHHHHHHHhcC--CCCCCEEEEeccCCChhhHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCC
Q 042119          108 YYGNYVKLSKLEYTILSENG--VVQPKKVAFVGSGPMPLTSIIMAKHHLTSTHFDNFDIDEAANDVARSIVASDAEFEGR  185 (286)
Q Consensus       108 y~~ny~~l~~~E~~~l~~~~--~~~~~~VL~IG~G~lp~tai~lA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~g~l~~~  185 (286)
                      .|+|+..+.+--...+.+..  .-.+++|+.||.|.+|......++.  .|++|+.+|+||.....|.    ..|     
T Consensus       222 ~fDn~yG~~eslvdgI~Ratg~~L~GKTVgVIG~G~IGr~vA~~lra--fGa~Viv~d~dp~~a~~A~----~~G-----  290 (464)
T 3n58_A          222 KFDNKYGCKESLVDGIRRGTDVMMAGKVAVVCGYGDVGKGSAQSLAG--AGARVKVTEVDPICALQAA----MDG-----  290 (464)
T ss_dssp             TTHHHHHHHHHHHHHHHHHHCCCCTTCEEEEECCSHHHHHHHHHHHH--TTCEEEEECSSHHHHHHHH----HTT-----
T ss_pred             hhhhhhcchHHHHHHHHHhcCCcccCCEEEEECcCHHHHHHHHHHHH--CCCEEEEEeCCcchhhHHH----hcC-----
Confidence            35777766665556555543  3688999999999999998888874  7999999999997543332    345     


Q ss_pred             eEEEEccccchhhcCCCcceeehhhhccCChhHHHHHHHHHHhhccCCcEEEEeecCc
Q 042119          186 MKFLTRDIMEVKEQLGEYDCIFLAALVGMSKEEKLTILGHIRKYMKDGGILLVRSAKG  243 (286)
Q Consensus       186 i~f~~~D~~~~~~~l~~fD~V~~aalvg~~~~~k~~vl~~l~~~l~pgg~lv~r~~~g  243 (286)
                      +++  .+..   ..+...|+|+.+.  +    .+.-+-.+..+.||||++|+-- ++|
T Consensus       291 ~~v--v~Le---ElL~~ADIVv~at--g----t~~lI~~e~l~~MK~GAILINv-GRg  336 (464)
T 3n58_A          291 FEV--VTLD---DAASTADIVVTTT--G----NKDVITIDHMRKMKDMCIVGNI-GHF  336 (464)
T ss_dssp             CEE--CCHH---HHGGGCSEEEECC--S----SSSSBCHHHHHHSCTTEEEEEC-SSS
T ss_pred             cee--ccHH---HHHhhCCEEEECC--C----CccccCHHHHhcCCCCeEEEEc-CCC
Confidence            222  2332   2345789988653  1    1111224566788999987643 343

>4dll_A 2-hydroxy-3-oxopropionate reductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, oxidoreductase; 2.11A {Polaromonas SP}

Probab=95.98  E-value=0.026  Score=51.42  Aligned_cols=92  Identities=14%  Similarity=0.165  Sum_probs=60.8

Q ss_pred             CCCEEEEeccCCChhhHHH-HHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEccccchhhcCCCcceeeh
Q 042119          130 QPKKVAFVGSGPMPLTSII-MAKHHLTSTHFDNFDIDEAANDVARSIVASDAEFEGRMKFLTRDIMEVKEQLGEYDCIFL  208 (286)
Q Consensus       130 ~~~~VL~IG~G~lp~tai~-lA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~g~l~~~i~f~~~D~~~~~~~l~~fD~V~~  208 (286)
                      ..++|.+||+|.+|..... |++   .|.+|+++|++++..+...+    .|     +++ +.|..+.   ..+.|+|++
T Consensus        30 ~~~~I~iIG~G~mG~~~a~~l~~---~G~~V~~~dr~~~~~~~l~~----~g-----~~~-~~~~~e~---~~~aDvVi~   93 (320)
T 4dll_A           30 YARKITFLGTGSMGLPMARRLCE---AGYALQVWNRTPARAASLAA----LG-----ATI-HEQARAA---ARDADIVVS   93 (320)
T ss_dssp             CCSEEEEECCTTTHHHHHHHHHH---TTCEEEEECSCHHHHHHHHT----TT-----CEE-ESSHHHH---HTTCSEEEE
T ss_pred             CCCEEEEECccHHHHHHHHHHHh---CCCeEEEEcCCHHHHHHHHH----CC-----CEe-eCCHHHH---HhcCCEEEE
Confidence            4579999999999875433 344   68899999999987655433    25     232 2343332   346899997


Q ss_pred             hhhccCChhHHHHHHH--HHHhhccCCcEEEEee
Q 042119          209 AALVGMSKEEKLTILG--HIRKYMKDGGILLVRS  240 (286)
Q Consensus       209 aalvg~~~~~k~~vl~--~l~~~l~pgg~lv~r~  240 (286)
                      +.--   ...-..++.  .+.+.++||.+++..+
T Consensus        94 ~vp~---~~~~~~v~~~~~~~~~l~~~~~vi~~s  124 (320)
T 4dll_A           94 MLEN---GAVVQDVLFAQGVAAAMKPGSLFLDMA  124 (320)
T ss_dssp             CCSS---HHHHHHHHTTTCHHHHCCTTCEEEECS
T ss_pred             ECCC---HHHHHHHHcchhHHhhCCCCCEEEecC
Confidence            6421   123345665  6778889998887654

>2zyd_A 6-phosphogluconate dehydrogenase, decarboxylating; NADP, pentose phosphate pathway, oxidoreductase, 6-phosphogl dehydrogenase; HET: GLO; 1.50A {Escherichia coli} PDB: 2zya_A* 3fwn_A* 2zyg_A 2w8z_A* 2w90_A*

Probab=95.95  E-value=0.014  Score=56.66  Aligned_cols=97  Identities=13%  Similarity=0.193  Sum_probs=63.5

Q ss_pred             CCCEEEEeccCCChhhHH-HHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEccccchhhcCCCcceeeh
Q 042119          130 QPKKVAFVGSGPMPLTSI-IMAKHHLTSTHFDNFDIDEAANDVARSIVASDAEFEGRMKFLTRDIMEVKEQLGEYDCIFL  208 (286)
Q Consensus       130 ~~~~VL~IG~G~lp~tai-~lA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~g~l~~~i~f~~~D~~~~~~~l~~fD~V~~  208 (286)
                      ..++|.+||+|.+|.... .|++   .|.+|+++|++++.++...+.   .+  +..+.. +.|..++...++..|+|++
T Consensus        14 ~~~~IgvIGlG~MG~~lA~~La~---~G~~V~v~~r~~~~~~~l~~~---~~--~~gi~~-~~s~~e~v~~l~~aDvVil   84 (480)
T 2zyd_A           14 SKQQIGVVGMAVMGRNLALNIES---RGYTVSIFNRSREKTEEVIAE---NP--GKKLVP-YYTVKEFVESLETPRRILL   84 (480)
T ss_dssp             -CBSEEEECCSHHHHHHHHHHHT---TTCCEEEECSSHHHHHHHHHH---ST--TSCEEE-CSSHHHHHHTBCSSCEEEE
T ss_pred             CCCeEEEEccHHHHHHHHHHHHh---CCCeEEEEeCCHHHHHHHHhh---CC--CCCeEE-eCCHHHHHhCCCCCCEEEE
Confidence            457899999999887633 3443   688999999999887655442   21  023332 3455454444445899997


Q ss_pred             hhhccCChhHHHHHHHHHHhhccCCcEEEE
Q 042119          209 AALVGMSKEEKLTILGHIRKYMKDGGILLV  238 (286)
Q Consensus       209 aalvg~~~~~k~~vl~~l~~~l~pgg~lv~  238 (286)
                      +.--+   ..-..+++.+.+.++||.+|+-
T Consensus        85 ~Vp~~---~~v~~vl~~l~~~l~~g~iIId  111 (480)
T 2zyd_A           85 MVKAG---AGTDAAIDSLKPYLDKGDIIID  111 (480)
T ss_dssp             CSCSS---SHHHHHHHHHGGGCCTTCEEEE
T ss_pred             ECCCH---HHHHHHHHHHHhhcCCCCEEEE
Confidence            64221   2345788999999999886664

>1hyh_A L-hicdh, L-2-hydroxyisocaproate dehydrogenase; L-2-hydroxycarboxylate dehydrogenase, L-lactate dehydrogenas oxidoreductase (CHOH(D)-NAD+(A)); HET: NAD; 2.20A {Weissella confusa} SCOP: c.2.1.5 d.162.1.1

Probab=95.92  E-value=0.037  Score=50.16  Aligned_cols=100  Identities=14%  Similarity=0.136  Sum_probs=59.8

Q ss_pred             CEEEEeccCCChhhHHHHHhhcCCC--cEEEEEeCChHHHHHHHH-HHHhcCCCCCCeEEEEccccchhhcCCCcceeeh
Q 042119          132 KKVAFVGSGPMPLTSIIMAKHHLTS--THFDNFDIDEAANDVARS-IVASDAEFEGRMKFLTRDIMEVKEQLGEYDCIFL  208 (286)
Q Consensus       132 ~~VL~IG~G~lp~tai~lA~~~~~g--~~V~~iDid~~ai~~Ar~-~~~~~g~l~~~i~f~~~D~~~~~~~l~~fD~V~~  208 (286)
                      ++|..||+|.+|.+.......  .|  .+|+.+|++++.++.... +-.....+..++++...|.    ..+.+.|+|++
T Consensus         2 ~kI~VIGaG~~G~~la~~L~~--~g~~~~V~l~d~~~~~~~~~~~~l~~~~~~~~~~~~~~~~d~----~~~~~aDvVii   75 (309)
T 1hyh_A            2 RKIGIIGLGNVGAAVAHGLIA--QGVADDYVFIDANEAKVKADQIDFQDAMANLEAHGNIVINDW----AALADADVVIS   75 (309)
T ss_dssp             CEEEEECCSHHHHHHHHHHHH--HTCCSEEEEECSSHHHHHHHHHHHHHHGGGSSSCCEEEESCG----GGGTTCSEEEE
T ss_pred             CEEEEECCCHHHHHHHHHHHh--CCCCCEEEEEcCCHHHHHHHHHHHHhhhhhcCCCeEEEeCCH----HHhCCCCEEEE
Confidence            489999999988764432221  34  689999999987754433 2222211123455544553    34567999998


Q ss_pred             hhhccCC----------------hhHHHHHHHHHHhhccCCcEEEE
Q 042119          209 AALVGMS----------------KEEKLTILGHIRKYMKDGGILLV  238 (286)
Q Consensus       209 aalvg~~----------------~~~k~~vl~~l~~~l~pgg~lv~  238 (286)
                      +.-....                .+...++++.+.+. .|++.+++
T Consensus        76 av~~~~~~~~~~g~~r~~l~~~n~~i~~~i~~~i~~~-~~~~~ii~  120 (309)
T 1hyh_A           76 TLGNIKLQQDNPTGDRFAELKFTSSMVQSVGTNLKES-GFHGVLVV  120 (309)
T ss_dssp             CCSCGGGTC-------CTTHHHHHHHHHHHHHHHHHT-TCCSEEEE
T ss_pred             ecCCcccCCCCCCCCHHHHHHHHHHHHHHHHHHHHHH-CCCcEEEE
Confidence            7543110                01135667777665 47887766

>3gt0_A Pyrroline-5-carboxylate reductase; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG; 2.00A {Bacillus cereus atcc 14579}

Probab=95.92  E-value=0.0073  Score=52.81  Aligned_cols=87  Identities=23%  Similarity=0.339  Sum_probs=56.0

Q ss_pred             CEEEEeccCCChhhHHH-HHhhcCCCc----EEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEccccchhhcCCCccee
Q 042119          132 KKVAFVGSGPMPLTSII-MAKHHLTST----HFDNFDIDEAANDVARSIVASDAEFEGRMKFLTRDIMEVKEQLGEYDCI  206 (286)
Q Consensus       132 ~~VL~IG~G~lp~tai~-lA~~~~~g~----~V~~iDid~~ai~~Ar~~~~~~g~l~~~i~f~~~D~~~~~~~l~~fD~V  206 (286)
                      ++|.+||+|.+|.+-.. |++   .|.    +|+.+|++++..+...+   ..|     +++ ..|..+.   ..+.|+|
T Consensus         3 ~~i~iIG~G~mG~~~a~~l~~---~g~~~~~~V~~~~r~~~~~~~~~~---~~g-----~~~-~~~~~e~---~~~aDvV   67 (247)
T 3gt0_A            3 KQIGFIGCGNMGMAMIGGMIN---KNIVSSNQIICSDLNTANLKNASE---KYG-----LTT-TTDNNEV---AKNADIL   67 (247)
T ss_dssp             CCEEEECCSHHHHHHHHHHHH---TTSSCGGGEEEECSCHHHHHHHHH---HHC-----CEE-CSCHHHH---HHHCSEE
T ss_pred             CeEEEECccHHHHHHHHHHHh---CCCCCCCeEEEEeCCHHHHHHHHH---HhC-----CEE-eCChHHH---HHhCCEE
Confidence            58999999988865332 333   454    89999999987665543   245     222 2333332   2358999


Q ss_pred             ehhhhccCChhHHHHHHHHHHhhccCCcEEE
Q 042119          207 FLAALVGMSKEEKLTILGHIRKYMKDGGILL  237 (286)
Q Consensus       207 ~~aalvg~~~~~k~~vl~~l~~~l~pgg~lv  237 (286)
                      +++.    +.....++++++.+.++||.+++
T Consensus        68 ilav----~~~~~~~v~~~l~~~l~~~~~vv   94 (247)
T 3gt0_A           68 ILSI----KPDLYASIINEIKEIIKNDAIIV   94 (247)
T ss_dssp             EECS----CTTTHHHHC---CCSSCTTCEEE
T ss_pred             EEEe----CHHHHHHHHHHHHhhcCCCCEEE
Confidence            9875    23567788999999998888666

>3d1l_A Putative NADP oxidoreductase BF3122; structural genomics, PSI-2, protein structure initiative, M center for structural genomics, MCSG; 2.19A {Bacteroides fragilis}

Probab=95.89  E-value=0.022  Score=49.98  Aligned_cols=90  Identities=9%  Similarity=0.118  Sum_probs=58.3

Q ss_pred             CCEEEEeccCCChhhHHH-HHhhcCCCcE-EEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEccccchhhcCCCcceeeh
Q 042119          131 PKKVAFVGSGPMPLTSII-MAKHHLTSTH-FDNFDIDEAANDVARSIVASDAEFEGRMKFLTRDIMEVKEQLGEYDCIFL  208 (286)
Q Consensus       131 ~~~VL~IG~G~lp~tai~-lA~~~~~g~~-V~~iDid~~ai~~Ar~~~~~~g~l~~~i~f~~~D~~~~~~~l~~fD~V~~  208 (286)
                      +.+|.+||+|.+|..-.. +++   .|.+ |+.+|++++..+...+   ..|     +.+ ..|..+   .+.+.|+|++
T Consensus        10 ~m~i~iiG~G~mG~~~a~~l~~---~g~~~v~~~~~~~~~~~~~~~---~~g-----~~~-~~~~~~---~~~~~Dvvi~   74 (266)
T 3d1l_A           10 DTPIVLIGAGNLATNLAKALYR---KGFRIVQVYSRTEESARELAQ---KVE-----AEY-TTDLAE---VNPYAKLYIV   74 (266)
T ss_dssp             GCCEEEECCSHHHHHHHHHHHH---HTCCEEEEECSSHHHHHHHHH---HTT-----CEE-ESCGGG---SCSCCSEEEE
T ss_pred             CCeEEEEcCCHHHHHHHHHHHH---CCCeEEEEEeCCHHHHHHHHH---HcC-----Cce-eCCHHH---HhcCCCEEEE
Confidence            468999999988765332 333   4666 8999999987765443   345     222 234322   3357899998


Q ss_pred             hhhccCChhHHHHHHHHHHhhccCCcEEEEe
Q 042119          209 AALVGMSKEEKLTILGHIRKYMKDGGILLVR  239 (286)
Q Consensus       209 aalvg~~~~~k~~vl~~l~~~l~pgg~lv~r  239 (286)
                      +.--    ..-.++++.+.+.+++|.+++--
T Consensus        75 av~~----~~~~~v~~~l~~~~~~~~ivv~~  101 (266)
T 3d1l_A           75 SLKD----SAFAELLQGIVEGKREEALMVHT  101 (266)
T ss_dssp             CCCH----HHHHHHHHHHHTTCCTTCEEEEC
T ss_pred             ecCH----HHHHHHHHHHHhhcCCCcEEEEC
Confidence            7432    23357888888888888766554

>1oju_A MDH, malate dehydrogenase; hyperthermophilic, oxidoreductase; HET: ENA; 2.79A {Archaeoglobus fulgidus} PDB: 1ojs_A* 2x0i_A* 2x0j_A*

Probab=95.88  E-value=0.057  Score=49.07  Aligned_cols=104  Identities=23%  Similarity=0.251  Sum_probs=60.9

Q ss_pred             CEEEEeccCCChhhHHHHHhhcCCCcEEEEEeCChHHHH-HHHHHHHhcCCCCCCeEEE-EccccchhhcCCCcceeehh
Q 042119          132 KKVAFVGSGPMPLTSIIMAKHHLTSTHFDNFDIDEAAND-VARSIVASDAEFEGRMKFL-TRDIMEVKEQLGEYDCIFLA  209 (286)
Q Consensus       132 ~~VL~IG~G~lp~tai~lA~~~~~g~~V~~iDid~~ai~-~Ar~~~~~~g~l~~~i~f~-~~D~~~~~~~l~~fD~V~~a  209 (286)
                      ++|..||+|..|.+...+........+|+.+|++++.++ .+.++-+....+....++. +.| .   ..+.+.|+|+++
T Consensus         1 MkI~ViGaG~vG~~la~~l~~~~~~~~v~L~D~~~~~~~g~~~dl~~~~~~~~~~~~i~~t~d-~---~a~~~aDiVVia   76 (294)
T 1oju_A            1 MKLGFVGAGRVGSTSAFTCLLNLDVDEIALVDIAEDLAVGEAMDLAHAAAGIDKYPKIVGGAD-Y---SLLKGSEIIVVT   76 (294)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHSCCSEEEEECSSHHHHHHHHHHHHHHHHTTTCCCEEEEESC-G---GGGTTCSEEEEC
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCCCeEEEEECChHHHHHHHHHHHhhhhhcCCCCEEEEeCC-H---HHhCCCCEEEEC
Confidence            489999999988876554332122238999999998765 3333332221011234444 335 2   345688999987


Q ss_pred             hhc----cCChhH----H----HHHHHHHHhhccCCcEEEEee
Q 042119          210 ALV----GMSKEE----K----LTILGHIRKYMKDGGILLVRS  240 (286)
Q Consensus       210 alv----g~~~~~----k----~~vl~~l~~~l~pgg~lv~r~  240 (286)
                      +-+    ||+..+    -    ..+.+.+.+. .|++.+++-+
T Consensus        77 ag~~~kpG~~R~dl~~~N~~i~~~i~~~i~~~-~p~a~iivvs  118 (294)
T 1oju_A           77 AGLARKPGMTRLDLAHKNAGIIKDIAKKIVEN-APESKILVVT  118 (294)
T ss_dssp             CCCCCCSSCCHHHHHHHHHHHHHHHHHHHHTT-STTCEEEECS
T ss_pred             CCCCCCCCCcHHHHHHHHHHHHHHHHHHHHhh-CCCeEEEEeC
Confidence            654    333222    1    2333445555 7899988865

>3vku_A L-LDH, L-lactate dehydrogenase; rossmann fold, NADH binding, oxidoreductase; 1.96A {Lactobacillus casei} PDB: 2zqz_A 2zqy_A 3vkv_A* 1llc_A*

Probab=95.87  E-value=0.028  Score=52.01  Aligned_cols=106  Identities=18%  Similarity=0.188  Sum_probs=63.8

Q ss_pred             CCCCEEEEeccCCChhhHHHHHhhcCCCcEEEEEeCChHHHH-HHHHHHHhcCCCCCCeEEEEccccchhhcCCCcceee
Q 042119          129 VQPKKVAFVGSGPMPLTSIIMAKHHLTSTHFDNFDIDEAAND-VARSIVASDAEFEGRMKFLTRDIMEVKEQLGEYDCIF  207 (286)
Q Consensus       129 ~~~~~VL~IG~G~lp~tai~lA~~~~~g~~V~~iDid~~ai~-~Ar~~~~~~g~l~~~i~f~~~D~~~~~~~l~~fD~V~  207 (286)
                      +.+.+|..||+|.+|.+............+++.+|++++.++ .+..+..... +...+++..+|-    .++.+.|+|+
T Consensus         7 ~~~~kV~ViGaG~vG~~~a~~l~~~~~~~el~l~D~~~~k~~g~a~DL~~~~~-~~~~~~i~~~~~----~a~~~aDiVv   81 (326)
T 3vku_A            7 KDHQKVILVGDGAVGSSYAYAMVLQGIAQEIGIVDIFKDKTKGDAIDLEDALP-FTSPKKIYSAEY----SDAKDADLVV   81 (326)
T ss_dssp             CCCCEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSCHHHHHHHHHHHHTTGG-GSCCCEEEECCG----GGGTTCSEEE
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHhCCCCCeEEEEeCChHHHHHHHhhHhhhhh-hcCCcEEEECcH----HHhcCCCEEE
Confidence            567899999999988876654432222348999999987554 4455544333 224567665553    3456889998


Q ss_pred             hhhhc----cCChhH--------HHHHHHHHHhhccCCcEEEEee
Q 042119          208 LAALV----GMSKEE--------KLTILGHIRKYMKDGGILLVRS  240 (286)
Q Consensus       208 ~aalv----g~~~~~--------k~~vl~~l~~~l~pgg~lv~r~  240 (286)
                      +++-+    ||+..+        -.++.+.+.+. .|++.+++-+
T Consensus        82 i~ag~~~kpG~tR~dL~~~N~~I~~~i~~~i~~~-~p~a~ilvvt  125 (326)
T 3vku_A           82 ITAGAPQKPGETRLDLVNKNLKILKSIVDPIVDS-GFNGIFLVAA  125 (326)
T ss_dssp             ECCCCC----------------CHHHHHHHHHTT-TCCSEEEECS
T ss_pred             ECCCCCCCCCchHHHHHHHHHHHHHHHHHHHHhc-CCceEEEEcc
Confidence            87643    332222        12334444443 6889887754

>1dlj_A UDP-glucose dehydrogenase; rossmann fold, ternary complex, crystallographic dimer, oxidoreductase; HET: NAI UGA; 1.80A {Streptococcus pyogenes} SCOP: a.100.1.4 c.2.1.6 c.26.3.1 PDB: 1dli_A*

Probab=95.84  E-value=0.025  Score=53.44  Aligned_cols=97  Identities=19%  Similarity=0.231  Sum_probs=60.3

Q ss_pred             CEEEEeccCCChhhHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCC-C------------CCCeEEEEccccchhh
Q 042119          132 KKVAFVGSGPMPLTSIIMAKHHLTSTHFDNFDIDEAANDVARSIVASDAE-F------------EGRMKFLTRDIMEVKE  198 (286)
Q Consensus       132 ~~VL~IG~G~lp~tai~lA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~g~-l------------~~~i~f~~~D~~~~~~  198 (286)
                      ++|.+||+|.+|........  . |.+|+++|++++.++..++    .+. .            ..++++ +.|..+   
T Consensus         1 MkI~VIG~G~vG~~~A~~La--~-G~~V~~~d~~~~~~~~l~~----~~~~i~e~~l~~~~~~~~~~l~~-t~~~~~---   69 (402)
T 1dlj_A            1 MKIAVAGSGYVGLSLGVLLS--L-QNEVTIVDILPSKVDKINN----GLSPIQDEYIEYYLKSKQLSIKA-TLDSKA---   69 (402)
T ss_dssp             CEEEEECCSHHHHHHHHHHT--T-TSEEEEECSCHHHHHHHHT----TCCSSCCHHHHHHHHHSCCCEEE-ESCHHH---
T ss_pred             CEEEEECCCHHHHHHHHHHh--C-CCEEEEEECCHHHHHHHHc----CCCCcCCCCHHHHHHhccCcEEE-eCCHHH---
Confidence            47999999988876443332  3 7899999999988765432    220 0            013333 233222   


Q ss_pred             cCCCcceeehhhhccC-------ChhHHHHHHHHHHhhccCCcEEEEee
Q 042119          199 QLGEYDCIFLAALVGM-------SKEEKLTILGHIRKYMKDGGILLVRS  240 (286)
Q Consensus       199 ~l~~fD~V~~aalvg~-------~~~~k~~vl~~l~~~l~pgg~lv~r~  240 (286)
                      .....|+||++.--..       +...-..+++.+.+ ++||.+++..+
T Consensus        70 ~~~~aDvviiavpt~~~~~~~~~dl~~v~~v~~~i~~-l~~~~iVV~~S  117 (402)
T 1dlj_A           70 AYKEAELVIIATPTNYNSRINYFDTQHVETVIKEVLS-VNSHATLIIKS  117 (402)
T ss_dssp             HHHHCSEEEECCCCCEETTTTEECCHHHHHHHHHHHH-HCSSCEEEECS
T ss_pred             HhcCCCEEEEecCCCcccCCCCccHHHHHHHHHHHHh-hCCCCEEEEeC
Confidence            2235799998732110       11135678889999 99999888754

>3ps9_A TRNA 5-methylaminomethyl-2-thiouridine biosynthes bifunctional protein MNMC; rossmann fold, oxidase, methyl transferase, FAD; HET: FAD SAM; 2.54A {Escherichia coli} PDB: 3awi_A*

Probab=95.81  E-value=0.034  Score=55.66  Aligned_cols=110  Identities=21%  Similarity=0.252  Sum_probs=73.5

Q ss_pred             CCCEEEEeccCCChhhHHHHHhhc-----------CCCcEEEEEeC---ChHHHHH-----------HHHHHHhcCC---
Q 042119          130 QPKKVAFVGSGPMPLTSIIMAKHH-----------LTSTHFDNFDI---DEAANDV-----------ARSIVASDAE---  181 (286)
Q Consensus       130 ~~~~VL~IG~G~lp~tai~lA~~~-----------~~g~~V~~iDi---d~~ai~~-----------Ar~~~~~~g~---  181 (286)
                      +.-+|+++|-| +|+..+...+..           ....++++++.   +++-+..           ++++.+....   
T Consensus        66 ~~~~i~e~gfG-~Gln~l~~~~~~~~~~~~~p~~~~~~l~~~s~E~~p~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~  144 (676)
T 3ps9_A           66 PLFVVAESGFG-TGLNFLTLWQAFDQFREAHPQAQLQRLHFISFEKFPLTRADLALAHQHWPELAPWAEQLQAQWPMPLP  144 (676)
T ss_dssp             SEEEEEEECCT-TSHHHHHHHHHHHHHHHHCTTSSCCEEEEEEEESSCCCHHHHHHHHTTCGGGHHHHHHHHHHCCCCCS
T ss_pred             CceEEEEeCCc-hHHHHHHHHHHHHHhhhhCcCCCCceEEEEEEeCCCCCHHHHHHHHHhChhhHHHHHHHHHhCcccCC
Confidence            34599999999 588877665521           11256999999   7776653           3344443321   


Q ss_pred             ------C---CCCeEEEEccccchhhcC-----CCcceeehhhhcc-CChhH-HHHHHHHHHhhccCCcEEEEee
Q 042119          182 ------F---EGRMKFLTRDIMEVKEQL-----GEYDCIFLAALVG-MSKEE-KLTILGHIRKYMKDGGILLVRS  240 (286)
Q Consensus       182 ------l---~~~i~f~~~D~~~~~~~l-----~~fD~V~~aalvg-~~~~~-k~~vl~~l~~~l~pgg~lv~r~  240 (286)
                            +   .-++++..||+.+....+     ..||++|++.+-. .+++. -.+++..+++.++|||++..-+
T Consensus       145 ~~~~~~~~~~~~~l~l~~gd~~~~l~~~~~~~~~~~d~~~~D~f~p~~np~~w~~~~~~~l~~~~~~g~~~~t~~  219 (676)
T 3ps9_A          145 GCHRLLLDAGRVTLDLWFGDINELTSQLDDSLNQKVDAWFLDGFAPAKNPDMWTQNLFNAMARLARPGGTLATFT  219 (676)
T ss_dssp             EEEEEEEGGGTEEEEEEESCHHHHGGGBCGGGTTCEEEEEECCSCGGGCGGGSCHHHHHHHHHHEEEEEEEEESC
T ss_pred             CceEEEecCCcEEEEEecCCHHHHHHhcccccCCcccEEEECCCCCcCChhhhhHHHHHHHHHHhCCCCEEEecc
Confidence                  0   124567889998776654     4699999987641 01111 2579999999999999998754

>3ldh_A Lactate dehydrogenase; oxidoreductase, CHOH donor, NAD acceptor; HET: NAD; 3.00A {Squalus acanthias} SCOP: i.12.1.1

Probab=95.79  E-value=0.056  Score=50.10  Aligned_cols=105  Identities=14%  Similarity=0.090  Sum_probs=65.7

Q ss_pred             CCCEEEEeccCCChhhHHHHHhhcCCCcEEEEEeCChHHHH-HHHHHHHhcCCCCCCeEEE-EccccchhhcCCCcceee
Q 042119          130 QPKKVAFVGSGPMPLTSIIMAKHHLTSTHFDNFDIDEAAND-VARSIVASDAEFEGRMKFL-TRDIMEVKEQLGEYDCIF  207 (286)
Q Consensus       130 ~~~~VL~IG~G~lp~tai~lA~~~~~g~~V~~iDid~~ai~-~Ar~~~~~~g~l~~~i~f~-~~D~~~~~~~l~~fD~V~  207 (286)
                      +..+|..||+|.+|.+..........-.+++.+|++++.++ .+..+..... .....++. +.|.    .++.+.|+|+
T Consensus        20 ~~~kV~ViGaG~vG~~~a~~la~~g~~~ev~L~Di~~~~~~g~a~DL~~~~~-~~~~~~i~~t~d~----~~~~daDiVI   94 (330)
T 3ldh_A           20 SYNKITVVGCDAVGMADAISVLMKDLADEVALVDVMEDKLKGEMMDLEHGSL-FLHTAKIVSGKDY----SVSAGSKLVV   94 (330)
T ss_dssp             CCCEEEEESTTHHHHHHHHHHHHHCCCSEEEEECSCHHHHHHHHHHHHHHGG-GSCCSEEEEESSS----CSCSSCSEEE
T ss_pred             CCCEEEEECCCHHHHHHHHHHHhCCCCCeEEEEECCHHHHHHHHHHhhhhhh-cccCCeEEEcCCH----HHhCCCCEEE
Confidence            56899999999988876654432122238999999998654 3444444322 11222333 3443    2467899999


Q ss_pred             hhhhc----cCC--------hhHHHHHHHHHHhhccCCcEEEEee
Q 042119          208 LAALV----GMS--------KEEKLTILGHIRKYMKDGGILLVRS  240 (286)
Q Consensus       208 ~aalv----g~~--------~~~k~~vl~~l~~~l~pgg~lv~r~  240 (286)
                      +++-+    ||+        .+-..++.+.+.+. .|++.+++-+
T Consensus        95 itaG~p~kpG~tR~dll~~N~~I~k~i~~~I~k~-~P~a~ilvvt  138 (330)
T 3ldh_A           95 ITAGARQQEGESRLNLVQRNVNIFKFIIPNIVKH-SPDCLKELHP  138 (330)
T ss_dssp             ECCSCCCCSSCCTTGGGHHHHHHHHHHHHHHHHH-CTTCEEEECS
T ss_pred             EeCCCCCCCCCCHHHHHHhhHHHHHHHHHHHHhh-CCCceEEeCC
Confidence            77533    332        13356777788887 8999887754

>3ufb_A Type I restriction-modification system methyltran subunit; methyltransferase activity, transferase; 1.80A {Vibrio vulnificus}

Probab=95.79  E-value=0.06  Score=52.86  Aligned_cols=126  Identities=10%  Similarity=0.059  Sum_probs=80.1

Q ss_pred             hhhhHHHHHHHHhcCCCCCCEEEEeccCCChhhHHHHHh--hcC---------CCcEEEEEeCChHHHHHHHHHHHhcCC
Q 042119          113 VKLSKLEYTILSENGVVQPKKVAFVGSGPMPLTSIIMAK--HHL---------TSTHFDNFDIDEAANDVARSIVASDAE  181 (286)
Q Consensus       113 ~~l~~~E~~~l~~~~~~~~~~VL~IG~G~lp~tai~lA~--~~~---------~g~~V~~iDid~~ai~~Ar~~~~~~g~  181 (286)
                      ..+++.=...+   .+.++.+|+|-.||++|+-....-.  ...         ....+.|+|+++.+..+|+-++--.|.
T Consensus       203 ~~Vv~lmv~l~---~p~~~~~I~DPacGsGgfL~~a~~~l~~~~~~~~~~~~~~~~~i~G~E~~~~~~~la~mNl~lhg~  279 (530)
T 3ufb_A          203 RPVVRFMVEVM---DPQLGESVLDPACGTGGFLVEAFEHLERQCKTVEDREVLQESSIFGGEAKSLPYLLVQMNLLLHGL  279 (530)
T ss_dssp             HHHHHHHHHHH---CCCTTCCEEETTCTTTHHHHHHHHHHHTTCCSHHHHHHHHTCCEEEECCSHHHHHHHHHHHHHHTC
T ss_pred             HHHHHHHHHhh---ccCCCCEEEeCCCCcchHHHHHHHHHHHhccchhHHHHHhhhhhhhhhccHHHHHHHHHHHHhcCC
Confidence            34555444433   5677889999999998875433211  011         135699999999999999987766673


Q ss_pred             CCCCeEEEEccccchhhc----CCCcceeehhhhccCC---------------hhHHHHHHHHHHhhcc-------CCcE
Q 042119          182 FEGRMKFLTRDIMEVKEQ----LGEYDCIFLAALVGMS---------------KEEKLTILGHIRKYMK-------DGGI  235 (286)
Q Consensus       182 l~~~i~f~~~D~~~~~~~----l~~fD~V~~aalvg~~---------------~~~k~~vl~~l~~~l~-------pgg~  235 (286)
                        +.-++.++|....+..    ...||+|+..--.+..               ...-..+++++.+.|+       |||+
T Consensus       280 --~~~~I~~~dtL~~~~~~~~~~~~fD~Il~NPPf~~~~~~~~~~~~~~~~~~~~~~~~Fl~~~l~~Lk~~~~~l~~gGr  357 (530)
T 3ufb_A          280 --EYPRIDPENSLRFPLREMGDKDRVDVILTNPPFGGEEEKGILGNFPEDMQTAETAMLFLQLIMRKLKRPGHGSDNGGR  357 (530)
T ss_dssp             --SCCEEECSCTTCSCGGGCCGGGCBSEEEECCCSSCBCCHHHHTTSCGGGCCCBHHHHHHHHHHHHBCCTTSSSSSCCE
T ss_pred             --ccccccccccccCchhhhcccccceEEEecCCCCccccccccccCchhcccchhHHHHHHHHHHHhhhhhhccCCCce
Confidence              3457888887543321    2369999743211110               0112347889999887       6998


Q ss_pred             EEEeecCc
Q 042119          236 LLVRSAKG  243 (286)
Q Consensus       236 lv~r~~~g  243 (286)
                      +.+--++|
T Consensus       358 ~avVlP~g  365 (530)
T 3ufb_A          358 AAVVVPNG  365 (530)
T ss_dssp             EEEEEEHH
T ss_pred             EEEEecch
Confidence            87765544

>3qha_A Putative oxidoreductase; seattle structural genomics center for infectious disease, S mycobacterium avium 104, rossmann fold; 2.25A {Mycobacterium avium}

Probab=95.78  E-value=0.02  Score=51.53  Aligned_cols=90  Identities=17%  Similarity=0.247  Sum_probs=61.4

Q ss_pred             CCEEEEeccCCChhhHH-HHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEccccchhhcCCCcceeehh
Q 042119          131 PKKVAFVGSGPMPLTSI-IMAKHHLTSTHFDNFDIDEAANDVARSIVASDAEFEGRMKFLTRDIMEVKEQLGEYDCIFLA  209 (286)
Q Consensus       131 ~~~VL~IG~G~lp~tai-~lA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~g~l~~~i~f~~~D~~~~~~~l~~fD~V~~a  209 (286)
                      .++|.+||+|.+|.... .|++   .|.+|+++|++++.++..++    .|     +++ +.|..+   ... .|+||++
T Consensus        15 ~~~I~vIG~G~mG~~~A~~l~~---~G~~V~~~dr~~~~~~~~~~----~g-----~~~-~~~~~~---~~~-aDvvi~~   77 (296)
T 3qha_A           15 QLKLGYIGLGNMGAPMATRMTE---WPGGVTVYDIRIEAMTPLAE----AG-----ATL-ADSVAD---VAA-ADLIHIT   77 (296)
T ss_dssp             CCCEEEECCSTTHHHHHHHHTT---STTCEEEECSSTTTSHHHHH----TT-----CEE-CSSHHH---HTT-SSEEEEC
T ss_pred             CCeEEEECcCHHHHHHHHHHHH---CCCeEEEEeCCHHHHHHHHH----CC-----CEE-cCCHHH---HHh-CCEEEEE
Confidence            46899999999987533 3333   68899999999988766544    35     222 234332   234 8999976


Q ss_pred             hhccCChhHHHHHHHHHHhhccCCcEEEEee
Q 042119          210 ALVGMSKEEKLTILGHIRKYMKDGGILLVRS  240 (286)
Q Consensus       210 alvg~~~~~k~~vl~~l~~~l~pgg~lv~r~  240 (286)
                      .--   ...-..+++.+.+.++||.+++..+
T Consensus        78 vp~---~~~~~~v~~~l~~~l~~g~ivv~~s  105 (296)
T 3qha_A           78 VLD---DAQVREVVGELAGHAKPGTVIAIHS  105 (296)
T ss_dssp             CSS---HHHHHHHHHHHHTTCCTTCEEEECS
T ss_pred             CCC---hHHHHHHHHHHHHhcCCCCEEEEeC
Confidence            421   2233467899999999998887654

>1np3_A Ketol-acid reductoisomerase; A DEEP figure-OF-eight knot, C-terminal alpha-helical domain oxidoreductase; 2.00A {Pseudomonas aeruginosa} SCOP: a.100.1.2 c.2.1.6

Probab=95.76  E-value=0.022  Score=52.49  Aligned_cols=94  Identities=20%  Similarity=0.189  Sum_probs=61.4

Q ss_pred             CCEEEEeccCCChhhHHHHHhhcCCCcEEEEEeCChHH-HHHHHHHHHhcCCCCCCeEEEEccccchhhcCCCcceeehh
Q 042119          131 PKKVAFVGSGPMPLTSIIMAKHHLTSTHFDNFDIDEAA-NDVARSIVASDAEFEGRMKFLTRDIMEVKEQLGEYDCIFLA  209 (286)
Q Consensus       131 ~~~VL~IG~G~lp~tai~lA~~~~~g~~V~~iDid~~a-i~~Ar~~~~~~g~l~~~i~f~~~D~~~~~~~l~~fD~V~~a  209 (286)
                      +++|.+||+|.+|.+-....+.  .|.+|+.+|.+++. .+.+    ...| +    ++.  |..+.   +...|+|+++
T Consensus        16 ~~~I~IIG~G~mG~alA~~L~~--~G~~V~~~~~~~~~~~~~a----~~~G-~----~~~--~~~e~---~~~aDvVila   79 (338)
T 1np3_A           16 GKKVAIIGYGSQGHAHACNLKD--SGVDVTVGLRSGSATVAKA----EAHG-L----KVA--DVKTA---VAAADVVMIL   79 (338)
T ss_dssp             TSCEEEECCSHHHHHHHHHHHH--TTCCEEEECCTTCHHHHHH----HHTT-C----EEE--CHHHH---HHTCSEEEEC
T ss_pred             CCEEEEECchHHHHHHHHHHHH--CcCEEEEEECChHHHHHHH----HHCC-C----EEc--cHHHH---HhcCCEEEEe
Confidence            4689999999988765433332  57889999999764 4444    3456 2    222  43332   3468999987


Q ss_pred             hhccCChhHHHHHHH-HHHhhccCCcEEEEeecCccee
Q 042119          210 ALVGMSKEEKLTILG-HIRKYMKDGGILLVRSAKGARA  246 (286)
Q Consensus       210 alvg~~~~~k~~vl~-~l~~~l~pgg~lv~r~~~g~r~  246 (286)
                      .-.    ..-..+++ ++.+.++||.+|+.  .+|...
T Consensus        80 vp~----~~~~~v~~~~i~~~l~~~~ivi~--~~gv~~  111 (338)
T 1np3_A           80 TPD----EFQGRLYKEEIEPNLKKGATLAF--AHGFSI  111 (338)
T ss_dssp             SCH----HHHHHHHHHHTGGGCCTTCEEEE--SCCHHH
T ss_pred             CCc----HHHHHHHHHHHHhhCCCCCEEEE--cCCchh
Confidence            432    33357887 88889999987773  355443

>1obb_A Maltase, alpha-glucosidase; glycosidase, sulfinic acid, NAD+, maltose, hydrolase; HET: MAL NAD; 1.90A {Thermotoga maritima} SCOP: c.2.1.5 d.162.1.2

Probab=95.75  E-value=0.05  Score=52.91  Aligned_cols=77  Identities=19%  Similarity=0.302  Sum_probs=49.6

Q ss_pred             CCEEEEeccCCChhhH---HHHHh-hcCCCcEEEEEeCChHHHHHHHHHHHhc--CCCCCCeEEEE-ccccchhhcCCCc
Q 042119          131 PKKVAFVGSGPMPLTS---IIMAK-HHLTSTHFDNFDIDEAANDVARSIVASD--AEFEGRMKFLT-RDIMEVKEQLGEY  203 (286)
Q Consensus       131 ~~~VL~IG~G~lp~ta---i~lA~-~~~~g~~V~~iDid~~ai~~Ar~~~~~~--g~l~~~i~f~~-~D~~~~~~~l~~f  203 (286)
                      ..+|..||+|.+|.+.   ..+++ ..+++.+|+-+|++++.++.+.......  + .....++.. .|.   ..++.+.
T Consensus         3 ~~KIaVIGAGsVg~g~ala~~La~~~~l~~~eV~L~Di~~e~l~~~~~~~~~~l~~-~~~~~~I~~ttD~---~eal~dA   78 (480)
T 1obb_A            3 SVKIGIIGAGSAVFSLRLVSDLCKTPGLSGSTVTLMDIDEERLDAILTIAKKYVEE-VGADLKFEKTMNL---DDVIIDA   78 (480)
T ss_dssp             CCEEEEETTTCHHHHHHHHHHHHTCGGGTTCEEEEECSCHHHHHHHHHHHHHHHHH-TTCCCEEEEESCH---HHHHTTC
T ss_pred             CCEEEEECCCchHHHHHHHHHHHhcCcCCCCEEEEEeCCHHHHHHHHHHHHHHhcc-CCCCcEEEEECCH---HHHhCCC
Confidence            4699999999766543   24543 1234889999999999888776665432  1 112344443 343   2345678


Q ss_pred             ceeehhhh
Q 042119          204 DCIFLAAL  211 (286)
Q Consensus       204 D~V~~aal  211 (286)
                      |+|++++-
T Consensus        79 D~VIiaag   86 (480)
T 1obb_A           79 DFVINTAM   86 (480)
T ss_dssp             SEEEECCC
T ss_pred             CEEEECCC
Confidence            99998873

>1rjd_A PPM1P, carboxy methyl transferase for protein phosphatase 2A catalytic subunit; SAM dependent methyltransferase; HET: SAM; 1.80A {Saccharomyces cerevisiae} SCOP: c.66.1.37 PDB: 1rje_A* 1rjf_A 1rjg_A* 2ob2_A* 2ob1_A

Probab=95.74  E-value=0.095  Score=48.44  Aligned_cols=104  Identities=16%  Similarity=0.251  Sum_probs=72.1

Q ss_pred             CCCEEEEeccCCChhhHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCC-------------------CCCCeEEEE
Q 042119          130 QPKKVAFVGSGPMPLTSIIMAKHHLTSTHFDNFDIDEAANDVARSIVASDAE-------------------FEGRMKFLT  190 (286)
Q Consensus       130 ~~~~VL~IG~G~lp~tai~lA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~g~-------------------l~~~i~f~~  190 (286)
                      +...|+.+||| +-..+..+.. ..++.++.-||. |+.+++-++++...+.                   ..++.+++.
T Consensus        97 ~~~qVV~LGaG-lDTr~~RL~~-~~~~~~~~EvD~-P~vi~~K~~~l~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~v~  173 (334)
T 1rjd_A           97 EKVQVVNLGCG-SDLRMLPLLQ-MFPHLAYVDIDY-NESVELKNSILRESEILRISLGLSKEDTAKSPFLIDQGRYKLAA  173 (334)
T ss_dssp             SSEEEEEETCT-TCCTHHHHHH-HCTTEEEEEEEC-HHHHHHHHHHHHHSHHHHHHHTCCSSCCCCTTEEEECSSEEEEE
T ss_pred             CCcEEEEeCCC-CccHHHHhcC-cCCCCEEEECCC-HHHHHHHHHHhhhccchhhhcccccccccccccccCCCceEEEe
Confidence            56899999999 5666676765 245777777777 9999999999887521                   136899999


Q ss_pred             ccccchhh------cC---CCcceeehh-hhccCChhHHHHHHHHHHhhccCCcEEE
Q 042119          191 RDIMEVKE------QL---GEYDCIFLA-ALVGMSKEEKLTILGHIRKYMKDGGILL  237 (286)
Q Consensus       191 ~D~~~~~~------~l---~~fD~V~~a-alvg~~~~~k~~vl~~l~~~l~pgg~lv  237 (286)
                      +|+.+...      ..   +...+++.. .+.-++.+.-.++++.+.+.. |||.++
T Consensus       174 ~DL~d~~w~~~ll~~~~d~~~Ptl~iaEgvL~YL~~~~~~~ll~~ia~~~-~~~~~v  229 (334)
T 1rjd_A          174 CDLNDITETTRLLDVCTKREIPTIVISECLLCYMHNNESQLLINTIMSKF-SHGLWI  229 (334)
T ss_dssp             CCTTCHHHHHHHHHTTCCTTSCEEEEEESCGGGSCHHHHHHHHHHHHHHC-SSEEEE
T ss_pred             cCCCCcHHHHHHHHhcCCCCCCEEEEEcchhhCCCHHHHHHHHHHHHhhC-CCcEEE
Confidence            99987422      12   123343332 233567777788999999887 666654

>2q3e_A UDP-glucose 6-dehydrogenase; hexamer, structural genomics, S genomics consortium, SGC, oxidoreductase; HET: NAD UPG; 2.00A {Homo sapiens} PDB: 2qg4_A* 3khu_A* 3itk_A* 3tdk_A* 3ptz_A* 3prj_A* 3tf5_A

Probab=95.73  E-value=0.018  Score=55.40  Aligned_cols=102  Identities=18%  Similarity=0.194  Sum_probs=63.5

Q ss_pred             CEEEEeccCCChhhH-HHHHhhcCCCcEEEEEeCChHHHHHHHH------------HHHhcCCCCCCeEEEEccccchhh
Q 042119          132 KKVAFVGSGPMPLTS-IIMAKHHLTSTHFDNFDIDEAANDVARS------------IVASDAEFEGRMKFLTRDIMEVKE  198 (286)
Q Consensus       132 ~~VL~IG~G~lp~ta-i~lA~~~~~g~~V~~iDid~~ai~~Ar~------------~~~~~g~l~~~i~f~~~D~~~~~~  198 (286)
                      ++|.+||+|.+|... ..|++ ..+|.+|+++|++++.++..++            .+.+.  ...++++ +.|..+   
T Consensus         6 mkI~VIG~G~mG~~lA~~La~-~g~G~~V~~~d~~~~~~~~l~~g~~~i~e~~l~~~~~~~--~~~~~~~-t~~~~e---   78 (467)
T 2q3e_A            6 KKICCIGAGYVGGPTCSVIAH-MCPEIRVTVVDVNESRINAWNSPTLPIYEPGLKEVVESC--RGKNLFF-STNIDD---   78 (467)
T ss_dssp             CEEEEECCSTTHHHHHHHHHH-HCTTSEEEEECSCHHHHHHHTSSSCSSCCTTHHHHHHHH--BTTTEEE-ESCHHH---
T ss_pred             cEEEEECCCHHHHHHHHHHHh-cCCCCEEEEEECCHHHHHHHhCCCCCcCCCCHHHHHHHh--hcCCEEE-ECCHHH---
Confidence            689999999999753 44555 2348899999999998876432            22211  0124544 334322   


Q ss_pred             cCCCcceeehhhhccC-----------ChhHHHHHHHHHHhhccCCcEEEEee
Q 042119          199 QLGEYDCIFLAALVGM-----------SKEEKLTILGHIRKYMKDGGILLVRS  240 (286)
Q Consensus       199 ~l~~fD~V~~aalvg~-----------~~~~k~~vl~~l~~~l~pgg~lv~r~  240 (286)
                      ...+.|+||++.--..           +...-..+++.+.+.++||.+++..+
T Consensus        79 ~~~~aDvViiaVptp~~~~~v~~~~~~dl~~v~~~~~~i~~~l~~g~iVV~~S  131 (467)
T 2q3e_A           79 AIKEADLVFISVNTPTKTYGMGKGRAADLKYIEACARRIVQNSNGYKIVTEKS  131 (467)
T ss_dssp             HHHHCSEEEECCCCCBCCSSTTTTTSBCCHHHHHHHHHHHHTCCSEEEEEECS
T ss_pred             HHhcCCEEEEEcCCchhhccccccCCCcHHHHHHHHHHHHhhCCCCCEEEECC
Confidence            2235799997742111           01113467888999999988877654

>1vpd_A Tartronate semialdehyde reductase; structural genomics, MCSG, protein structure initiative, PSI, midwest center for structural genomics; HET: MSE TLA; 1.65A {Salmonella typhimurium} SCOP: a.100.1.1 c.2.1.6

Probab=95.70  E-value=0.018  Score=51.32  Aligned_cols=90  Identities=16%  Similarity=0.053  Sum_probs=57.8

Q ss_pred             CEEEEeccCCChhhHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEccccchhhcCCCcceeehhhh
Q 042119          132 KKVAFVGSGPMPLTSIIMAKHHLTSTHFDNFDIDEAANDVARSIVASDAEFEGRMKFLTRDIMEVKEQLGEYDCIFLAAL  211 (286)
Q Consensus       132 ~~VL~IG~G~lp~tai~lA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~g~l~~~i~f~~~D~~~~~~~l~~fD~V~~aal  211 (286)
                      .+|.+||+|.+|........  ..|.+|+.+|++++..+..++    .|     +.+ ..|..+.   +.++|+|+++.-
T Consensus         6 m~i~iiG~G~~G~~~a~~l~--~~g~~V~~~~~~~~~~~~~~~----~g-----~~~-~~~~~~~---~~~~D~vi~~v~   70 (299)
T 1vpd_A            6 MKVGFIGLGIMGKPMSKNLL--KAGYSLVVSDRNPEAIADVIA----AG-----AET-ASTAKAI---AEQCDVIITMLP   70 (299)
T ss_dssp             CEEEEECCSTTHHHHHHHHH--HTTCEEEEECSCHHHHHHHHH----TT-----CEE-CSSHHHH---HHHCSEEEECCS
T ss_pred             ceEEEECchHHHHHHHHHHH--hCCCEEEEEeCCHHHHHHHHH----CC-----Cee-cCCHHHH---HhCCCEEEEECC
Confidence            58999999999876443322  157899999999987765443    25     222 2333222   235899997742


Q ss_pred             ccCChhHHHHHH---HHHHhhccCCcEEEEe
Q 042119          212 VGMSKEEKLTIL---GHIRKYMKDGGILLVR  239 (286)
Q Consensus       212 vg~~~~~k~~vl---~~l~~~l~pgg~lv~r  239 (286)
                      .   ...-..++   +.+.+.++||.+++.-
T Consensus        71 ~---~~~~~~~~~~~~~l~~~l~~~~~vv~~   98 (299)
T 1vpd_A           71 N---SPHVKEVALGENGIIEGAKPGTVLIDM   98 (299)
T ss_dssp             S---HHHHHHHHHSTTCHHHHCCTTCEEEEC
T ss_pred             C---HHHHHHHHhCcchHhhcCCCCCEEEEC
Confidence            1   12334566   5777889999877654

>3hwr_A 2-dehydropantoate 2-reductase; YP_299159.1, PANE/APBA family ketopantoate reductase, struct genomics, joint center for structural genomics; HET: NDP BCN; 2.15A {Ralstonia eutropha}

Probab=95.70  E-value=0.027  Score=51.22  Aligned_cols=93  Identities=11%  Similarity=0.119  Sum_probs=59.0

Q ss_pred             CCCEEEEeccCCChhhHH-HHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCC---CCeEEE-----EccccchhhcC
Q 042119          130 QPKKVAFVGSGPMPLTSI-IMAKHHLTSTHFDNFDIDEAANDVARSIVASDAEFE---GRMKFL-----TRDIMEVKEQL  200 (286)
Q Consensus       130 ~~~~VL~IG~G~lp~tai-~lA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~g~l~---~~i~f~-----~~D~~~~~~~l  200 (286)
                      ...+|+.||+|.+|.... .|++   .|.+|+.+ .+++.++..++.    | +.   ....+.     +.|.    ...
T Consensus        18 ~~~kI~IiGaGa~G~~~a~~L~~---~G~~V~l~-~~~~~~~~i~~~----g-~~~~~~~~~~~~~~~~~~~~----~~~   84 (318)
T 3hwr_A           18 QGMKVAIMGAGAVGCYYGGMLAR---AGHEVILI-ARPQHVQAIEAT----G-LRLETQSFDEQVKVSASSDP----SAV   84 (318)
T ss_dssp             --CEEEEESCSHHHHHHHHHHHH---TTCEEEEE-CCHHHHHHHHHH----C-EEEECSSCEEEECCEEESCG----GGG
T ss_pred             cCCcEEEECcCHHHHHHHHHHHH---CCCeEEEE-EcHhHHHHHHhC----C-eEEEcCCCcEEEeeeeeCCH----HHc
Confidence            457999999998885433 3444   67899999 998877665542    3 10   011111     1222    223


Q ss_pred             CCcceeehhhhccCChhHHHHHHHHHHhhccCCcEEEEe
Q 042119          201 GEYDCIFLAALVGMSKEEKLTILGHIRKYMKDGGILLVR  239 (286)
Q Consensus       201 ~~fD~V~~aalvg~~~~~k~~vl~~l~~~l~pgg~lv~r  239 (286)
                      ..+|+|+++.-.    ..-.++++.+.+.++|+..++.-
T Consensus        85 ~~~D~vilavk~----~~~~~~l~~l~~~l~~~~~iv~~  119 (318)
T 3hwr_A           85 QGADLVLFCVKS----TDTQSAALAMKPALAKSALVLSL  119 (318)
T ss_dssp             TTCSEEEECCCG----GGHHHHHHHHTTTSCTTCEEEEE
T ss_pred             CCCCEEEEEccc----ccHHHHHHHHHHhcCCCCEEEEe
Confidence            579999987422    34567899999999998766543

>3oig_A Enoyl-[acyl-carrier-protein] reductase [NADH]; fatty acid synthesis, rossmann-like fold, enoyl-ACP reductas binding; HET: NAD IMJ; 1.25A {Bacillus subtilis} SCOP: c.2.1.2 PDB: 3oif_A* 2qio_A* 3oje_A 3ojf_A*

Probab=95.50  E-value=0.11  Score=45.24  Aligned_cols=106  Identities=12%  Similarity=0.189  Sum_probs=72.3

Q ss_pred             CCCEEEEeccCC---Chh-hHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEccccchhh-------
Q 042119          130 QPKKVAFVGSGP---MPL-TSIIMAKHHLTSTHFDNFDIDEAANDVARSIVASDAEFEGRMKFLTRDIMEVKE-------  198 (286)
Q Consensus       130 ~~~~VL~IG~G~---lp~-tai~lA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~g~l~~~i~f~~~D~~~~~~-------  198 (286)
                      .+++|+..|++.   +|. .+..|++   .|++|+.+|.++...+...++.+..+.  .++.++.+|+.+...       
T Consensus         6 ~~k~vlVTGasg~~GIG~~ia~~l~~---~G~~V~~~~r~~~~~~~~~~~~~~~~~--~~~~~~~~D~~~~~~v~~~~~~   80 (266)
T 3oig_A            6 EGRNIVVMGVANKRSIAWGIARSLHE---AGARLIFTYAGERLEKSVHELAGTLDR--NDSIILPCDVTNDAEIETCFAS   80 (266)
T ss_dssp             TTCEEEEECCCSTTSHHHHHHHHHHH---TTCEEEEEESSGGGHHHHHHHHHTSSS--CCCEEEECCCSSSHHHHHHHHH
T ss_pred             CCCEEEEEcCCCCCcHHHHHHHHHHH---CCCEEEEecCchHHHHHHHHHHHhcCC--CCceEEeCCCCCHHHHHHHHHH
Confidence            468999999642   333 3445555   799999999998888888888777662  489999999976321       


Q ss_pred             ---cCCCcceeehhhhcc-----------CChhHHH-----------HHHHHHHhhccCCcEEEEee
Q 042119          199 ---QLGEYDCIFLAALVG-----------MSKEEKL-----------TILGHIRKYMKDGGILLVRS  240 (286)
Q Consensus       199 ---~l~~fD~V~~aalvg-----------~~~~~k~-----------~vl~~l~~~l~pgg~lv~r~  240 (286)
                         ..+..|+++..+.+.           .+.++..           .+++.+.+.|+++|.++.-+
T Consensus        81 ~~~~~g~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~g~iv~is  147 (266)
T 3oig_A           81 IKEQVGVIHGIAHCIAFANKEELVGEYLNTNRDGFLLAHNISSYSLTAVVKAARPMMTEGGSIVTLT  147 (266)
T ss_dssp             HHHHHSCCCEEEECCCCCCGGGGSSCGGGCCHHHHHHHHHHHTHHHHHHHHHHGGGCTTCEEEEEEE
T ss_pred             HHHHhCCeeEEEEccccccccccccchhhccHHHHHHHHHHhHHHHHHHHHHHHhhcCCCceEEEEe
Confidence               224688887655331           1222222           25667788888888887765

>2iz1_A 6-phosphogluconate dehydrogenase, decarboxylating; pentose shunt, oxidoreductase, gluconate utilization; HET: ATR RES P33; 2.30A {Lactococcus lactis} PDB: 2iz0_A* 2iyp_A* 2iyo_A*

Probab=95.48  E-value=0.03  Score=54.05  Aligned_cols=95  Identities=13%  Similarity=0.138  Sum_probs=62.5

Q ss_pred             CEEEEeccCCChhhHH-HHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEccccchhhcCCCcceeehhh
Q 042119          132 KKVAFVGSGPMPLTSI-IMAKHHLTSTHFDNFDIDEAANDVARSIVASDAEFEGRMKFLTRDIMEVKEQLGEYDCIFLAA  210 (286)
Q Consensus       132 ~~VL~IG~G~lp~tai-~lA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~g~l~~~i~f~~~D~~~~~~~l~~fD~V~~aa  210 (286)
                      .+|.+||+|.+|.... .|++   .|.+|+.+|++++.++...+.   .+  +..+. .+.|..++...++..|+|+++.
T Consensus         6 ~~IgvIG~G~mG~~lA~~L~~---~G~~V~v~dr~~~~~~~l~~~---~~--~~gi~-~~~s~~e~v~~l~~aDvVilav   76 (474)
T 2iz1_A            6 ANFGVVGMAVMGKNLALNVES---RGYTVAIYNRTTSKTEEVFKE---HQ--DKNLV-FTKTLEEFVGSLEKPRRIMLMV   76 (474)
T ss_dssp             BSEEEECCSHHHHHHHHHHHH---TTCCEEEECSSHHHHHHHHHH---TT--TSCEE-ECSSHHHHHHTBCSSCEEEECC
T ss_pred             CcEEEEeeHHHHHHHHHHHHh---CCCEEEEEcCCHHHHHHHHHh---Cc--CCCeE-EeCCHHHHHhhccCCCEEEEEc
Confidence            5899999998886533 3444   578999999999887665542   21  12343 2345545444444689999764


Q ss_pred             hccCChhHHHHHHHHHHhhccCCcEEEE
Q 042119          211 LVGMSKEEKLTILGHIRKYMKDGGILLV  238 (286)
Q Consensus       211 lvg~~~~~k~~vl~~l~~~l~pgg~lv~  238 (286)
                      -.+   ..-..+++.+.+.++||.+|+-
T Consensus        77 p~~---~~v~~vl~~l~~~l~~g~iiId  101 (474)
T 2iz1_A           77 QAG---AATDATIKSLLPLLDIGDILID  101 (474)
T ss_dssp             CTT---HHHHHHHHHHGGGCCTTCEEEE
T ss_pred             cCc---hHHHHHHHHHHhhCCCCCEEEE
Confidence            211   2345688889999999886664

>2pv7_A T-protein [includes: chorismate mutase (EC 5.4.99 and prephenate dehydrogenase (EC...; 1574749, chorismate mutase type II; HET: MSE TYR NAD; 2.00A {Haemophilus influenzae} SCOP: a.100.1.12 c.2.1.6

Probab=95.41  E-value=0.02  Score=51.67  Aligned_cols=76  Identities=14%  Similarity=0.218  Sum_probs=53.6

Q ss_pred             CEEEEec-cCCChhhHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEccccchhhcCCCcceeehhh
Q 042119          132 KKVAFVG-SGPMPLTSIIMAKHHLTSTHFDNFDIDEAANDVARSIVASDAEFEGRMKFLTRDIMEVKEQLGEYDCIFLAA  210 (286)
Q Consensus       132 ~~VL~IG-~G~lp~tai~lA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~g~l~~~i~f~~~D~~~~~~~l~~fD~V~~aa  210 (286)
                      ++|.+|| +|.+|.+.....+  ..|.+|+++|++++.                       |.   .......|+|+++.
T Consensus        22 ~~I~iIGg~G~mG~~la~~l~--~~G~~V~~~~~~~~~-----------------------~~---~~~~~~aDvVilav   73 (298)
T 2pv7_A           22 HKIVIVGGYGKLGGLFARYLR--ASGYPISILDREDWA-----------------------VA---ESILANADVVIVSV   73 (298)
T ss_dssp             CCEEEETTTSHHHHHHHHHHH--TTTCCEEEECTTCGG-----------------------GH---HHHHTTCSEEEECS
T ss_pred             CEEEEEcCCCHHHHHHHHHHH--hCCCeEEEEECCccc-----------------------CH---HHHhcCCCEEEEeC
Confidence            5899999 9988866443332  267899999998751                       11   12235689999875


Q ss_pred             hccCChhHHHHHHHHHHhhccCCcEEEEe
Q 042119          211 LVGMSKEEKLTILGHIRKYMKDGGILLVR  239 (286)
Q Consensus       211 lvg~~~~~k~~vl~~l~~~l~pgg~lv~r  239 (286)
                      -.    ....++++++.+.++||.+|+.-
T Consensus        74 p~----~~~~~vl~~l~~~l~~~~iv~~~   98 (298)
T 2pv7_A           74 PI----NLTLETIERLKPYLTENMLLADL   98 (298)
T ss_dssp             CG----GGHHHHHHHHGGGCCTTSEEEEC
T ss_pred             CH----HHHHHHHHHHHhhcCCCcEEEEC
Confidence            33    45678899999899998866653

>1pgj_A 6PGDH, 6-PGDH, 6-phosphogluconate dehydrogenase; oxidoreductase, CHOH(D)-NADP+(B); 2.82A {Trypanosoma brucei} SCOP: a.100.1.1 c.2.1.6

Probab=95.40  E-value=0.028  Score=54.47  Aligned_cols=97  Identities=18%  Similarity=0.240  Sum_probs=62.3

Q ss_pred             CEEEEeccCCChhhHH-HHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCC--CCCCeEEEEccccchhhcCCCcceeeh
Q 042119          132 KKVAFVGSGPMPLTSI-IMAKHHLTSTHFDNFDIDEAANDVARSIVASDAE--FEGRMKFLTRDIMEVKEQLGEYDCIFL  208 (286)
Q Consensus       132 ~~VL~IG~G~lp~tai-~lA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~g~--l~~~i~f~~~D~~~~~~~l~~fD~V~~  208 (286)
                      ++|.+||+|.+|.... .|++   .|.+|+.+|++++.++...+.   .|.  ...++. .+.|..++...+...|+|++
T Consensus         2 MkIgVIG~G~mG~~lA~~La~---~G~~V~v~dr~~~~~~~l~~~---~g~~~~~~~i~-~~~~~~e~v~~l~~aDvVil   74 (478)
T 1pgj_A            2 MDVGVVGLGVMGANLALNIAE---KGFKVAVFNRTYSKSEEFMKA---NASAPFAGNLK-AFETMEAFAASLKKPRKALI   74 (478)
T ss_dssp             BSEEEECCSHHHHHHHHHHHH---TTCCEEEECSSHHHHHHHHHH---TTTSTTGGGEE-ECSCHHHHHHHBCSSCEEEE
T ss_pred             CEEEEEChHHHHHHHHHHHHH---CCCEEEEEeCCHHHHHHHHHh---cCCCCCCCCeE-EECCHHHHHhcccCCCEEEE
Confidence            4799999998886533 3444   578999999999887655442   230  012232 23454444444446899997


Q ss_pred             hhhccCChhHHHHHHHHHHhhccCCcEEEE
Q 042119          209 AALVGMSKEEKLTILGHIRKYMKDGGILLV  238 (286)
Q Consensus       209 aalvg~~~~~k~~vl~~l~~~l~pgg~lv~  238 (286)
                      +.--+   ..-..+++.+.+.++||.+|+-
T Consensus        75 aVp~~---~~v~~vl~~l~~~l~~g~iIId  101 (478)
T 1pgj_A           75 LVQAG---AATDSTIEQLKKVFEKGDILVD  101 (478)
T ss_dssp             CCCCS---HHHHHHHHHHHHHCCTTCEEEE
T ss_pred             ecCCh---HHHHHHHHHHHhhCCCCCEEEE
Confidence            64221   2345688899999999886664

>3pef_A 6-phosphogluconate dehydrogenase, NAD-binding; gamma-hydroxybutyrate dehydrogenase, succinic semialdehyde R geobacter metallireducens; HET: NAP; 2.07A {Geobacter metallireducens}

Probab=95.34  E-value=0.021  Score=50.97  Aligned_cols=90  Identities=12%  Similarity=0.074  Sum_probs=59.9

Q ss_pred             CEEEEeccCCChhhH-HHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEccccchhhcCCCcceeehhh
Q 042119          132 KKVAFVGSGPMPLTS-IIMAKHHLTSTHFDNFDIDEAANDVARSIVASDAEFEGRMKFLTRDIMEVKEQLGEYDCIFLAA  210 (286)
Q Consensus       132 ~~VL~IG~G~lp~ta-i~lA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~g~l~~~i~f~~~D~~~~~~~l~~fD~V~~aa  210 (286)
                      ++|.+||+|.+|... ..|++   .|.+|+++|++++..+..++    .|     +++ +.|..+..   .+.|+|+++.
T Consensus         2 ~~i~iIG~G~mG~~~a~~l~~---~G~~V~~~dr~~~~~~~~~~----~g-----~~~-~~~~~~~~---~~aDvvi~~v   65 (287)
T 3pef_A            2 QKFGFIGLGIMGSAMAKNLVK---AGCSVTIWNRSPEKAEELAA----LG-----AER-AATPCEVV---ESCPVTFAML   65 (287)
T ss_dssp             CEEEEECCSHHHHHHHHHHHH---TTCEEEEECSSGGGGHHHHH----TT-----CEE-CSSHHHHH---HHCSEEEECC
T ss_pred             CEEEEEeecHHHHHHHHHHHH---CCCeEEEEcCCHHHHHHHHH----CC-----Cee-cCCHHHHH---hcCCEEEEEc
Confidence            689999999988753 33444   68899999999998766544    35     222 23433322   3579999763


Q ss_pred             hccCChhHHHHHH---HHHHhhccCCcEEEEee
Q 042119          211 LVGMSKEEKLTIL---GHIRKYMKDGGILLVRS  240 (286)
Q Consensus       211 lvg~~~~~k~~vl---~~l~~~l~pgg~lv~r~  240 (286)
                      -   +...-..++   +.+.+.++||.+++..+
T Consensus        66 p---~~~~~~~v~~~~~~l~~~l~~~~~vi~~s   95 (287)
T 3pef_A           66 A---DPAAAEEVCFGKHGVLEGIGEGRGYVDMS   95 (287)
T ss_dssp             S---SHHHHHHHHHSTTCHHHHCCTTCEEEECS
T ss_pred             C---CHHHHHHHHcCcchHhhcCCCCCEEEeCC
Confidence            2   112334566   77888999998877654

>3pxx_A Carveol dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, NAD, tuberculosis; HET: NAD; 2.00A {Mycobacterium avium} SCOP: c.2.1.0

Probab=95.31  E-value=0.2  Score=43.90  Aligned_cols=104  Identities=15%  Similarity=0.175  Sum_probs=70.6

Q ss_pred             CCCEEEEeccCCChhhH---HHHHhhcCCCcEEEEEeCC------------hHHHHHHHHHHHhcCCCCCCeEEEEcccc
Q 042119          130 QPKKVAFVGSGPMPLTS---IIMAKHHLTSTHFDNFDID------------EAANDVARSIVASDAEFEGRMKFLTRDIM  194 (286)
Q Consensus       130 ~~~~VL~IG~G~lp~ta---i~lA~~~~~g~~V~~iDid------------~~ai~~Ar~~~~~~g~l~~~i~f~~~D~~  194 (286)
                      .+++||..|++ .|+..   ..|++   .|++|+.+|++            .+.++...+.+...|   .++.++.+|+.
T Consensus         9 ~gk~vlVTGas-~gIG~~ia~~l~~---~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~D~~   81 (287)
T 3pxx_A            9 QDKVVLVTGGA-RGQGRSHAVKLAE---EGADIILFDICHDIETNEYPLATSRDLEEAGLEVEKTG---RKAYTAEVDVR   81 (287)
T ss_dssp             TTCEEEEETTT-SHHHHHHHHHHHH---TTCEEEEEECCSCCTTSCSCCCCHHHHHHHHHHHHHTT---SCEEEEECCTT
T ss_pred             CCCEEEEeCCC-ChHHHHHHHHHHH---CCCeEEEEcccccccccccchhhhHHHHHHHHHHHhcC---CceEEEEccCC
Confidence            46899999986 45543   33444   79999999998            777777776666666   58999999997


Q ss_pred             chhh----------cCCCcceeehhhhcc-----CChhHHH-----------HHHHHHHhhccCCcEEEEee
Q 042119          195 EVKE----------QLGEYDCIFLAALVG-----MSKEEKL-----------TILGHIRKYMKDGGILLVRS  240 (286)
Q Consensus       195 ~~~~----------~l~~fD~V~~aalvg-----~~~~~k~-----------~vl~~l~~~l~pgg~lv~r~  240 (286)
                      +...          .++..|+++..+-+.     .+.++..           .+++.+.+.|+.+|.++.-+
T Consensus        82 ~~~~v~~~~~~~~~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~g~iv~is  153 (287)
T 3pxx_A           82 DRAAVSRELANAVAEFGKLDVVVANAGICPLGAHLPVQAFADAFDVDFVGVINTVHAALPYLTSGASIITTG  153 (287)
T ss_dssp             CHHHHHHHHHHHHHHHSCCCEEEECCCCCCCCTTCCTHHHHHHHHHHTHHHHHHHHHHGGGCCTTCEEEEEC
T ss_pred             CHHHHHHHHHHHHHHcCCCCEEEECCCcCcccCcCCHHHHHHHhhhhhhhhHHHHHHHHHHhhcCcEEEEec
Confidence            6432          224789888665431     1223222           34567788888888887765

>3hn2_A 2-dehydropantoate 2-reductase; PSI-2, NYSGXRC, structural GE protein structure initiative; 2.50A {Geobacter metallireducens}

Probab=95.29  E-value=0.013  Score=53.07  Aligned_cols=93  Identities=15%  Similarity=0.248  Sum_probs=55.3

Q ss_pred             CEEEEeccCCChhhHHH-HHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCC-----CCeEEEEccccchhhcCCCcce
Q 042119          132 KKVAFVGSGPMPLTSII-MAKHHLTSTHFDNFDIDEAANDVARSIVASDAEFE-----GRMKFLTRDIMEVKEQLGEYDC  205 (286)
Q Consensus       132 ~~VL~IG~G~lp~tai~-lA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~g~l~-----~~i~f~~~D~~~~~~~l~~fD~  205 (286)
                      ++|+.||+|.+|..-.. |++   .|.+|+.++.++  .    +.+++.| +.     ...++..-.+.+-......+|+
T Consensus         3 mkI~IiGaGaiG~~~a~~L~~---~g~~V~~~~r~~--~----~~i~~~g-~~~~~~~g~~~~~~~~~~~~~~~~~~~D~   72 (312)
T 3hn2_A            3 LRIAIVGAGALGLYYGALLQR---SGEDVHFLLRRD--Y----EAIAGNG-LKVFSINGDFTLPHVKGYRAPEEIGPMDL   72 (312)
T ss_dssp             -CEEEECCSTTHHHHHHHHHH---TSCCEEEECSTT--H----HHHHHTC-EEEEETTCCEEESCCCEESCHHHHCCCSE
T ss_pred             CEEEEECcCHHHHHHHHHHHH---CCCeEEEEEcCc--H----HHHHhCC-CEEEcCCCeEEEeeceeecCHHHcCCCCE
Confidence            58999999999876433 444   578999999986  2    2334445 21     1122100011111122357999


Q ss_pred             eehhhhccCChhHHHHHHHHHHhhccCCcEEEE
Q 042119          206 IFLAALVGMSKEEKLTILGHIRKYMKDGGILLV  238 (286)
Q Consensus       206 V~~aalvg~~~~~k~~vl~~l~~~l~pgg~lv~  238 (286)
                      |+++.=.    ..-.++++.+.+.++|+..++.
T Consensus        73 vilavk~----~~~~~~l~~l~~~l~~~~~iv~  101 (312)
T 3hn2_A           73 VLVGLKT----FANSRYEELIRPLVEEGTQILT  101 (312)
T ss_dssp             EEECCCG----GGGGGHHHHHGGGCCTTCEEEE
T ss_pred             EEEecCC----CCcHHHHHHHHhhcCCCCEEEE
Confidence            9987321    2333688999999999876554

>1x0v_A GPD-C, GPDH-C, glycerol-3-phosphate dehydrogenase [NAD+], cytoplasmic; two independent domains, GXGXXG motif, oxidoreductase; 2.30A {Homo sapiens} PDB: 1x0x_A* 1wpq_A* 2pla_A*

Probab=95.24  E-value=0.02  Score=52.38  Aligned_cols=98  Identities=13%  Similarity=0.158  Sum_probs=59.9

Q ss_pred             CCEEEEeccCCChhhHH-HHHhhcCCC-------cEEEEEeCChH-----HHHHHHHHHH---hc-CC-CCCCeEEEEcc
Q 042119          131 PKKVAFVGSGPMPLTSI-IMAKHHLTS-------THFDNFDIDEA-----ANDVARSIVA---SD-AE-FEGRMKFLTRD  192 (286)
Q Consensus       131 ~~~VL~IG~G~lp~tai-~lA~~~~~g-------~~V~~iDid~~-----ai~~Ar~~~~---~~-g~-l~~~i~f~~~D  192 (286)
                      .++|.+||+|.+|.+.. .|++   .|       .+|+.+|++++     ..+..++.-.   .. |. +..++.+ +.|
T Consensus         8 ~mkI~iIG~G~mG~~~a~~l~~---~g~~~~~~~~~V~~~~r~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~-~~~   83 (354)
T 1x0v_A            8 SKKVCIVGSGNWGSAIAKIVGG---NAAQLAQFDPRVTMWVFEEDIGGKKLTEIINTQHENVKYLPGHKLPPNVVA-VPD   83 (354)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHH---HHHHCTTEEEEEEEECCCCBSSSSBHHHHHHHHSCCTTTSTTCCCCTTEEE-ESS
T ss_pred             CCeEEEECCCHHHHHHHHHHHh---cCCcccCCCCeEEEEEcChhhhhhHHHHHHHhcCcccccCCcccCccCeEE-EcC
Confidence            35899999998876543 3444   45       78999999987     5544332100   00 10 1123333 233


Q ss_pred             ccchhhcCCCcceeehhhhccCChhHHHHHHHHHHhhccCCcEEEEe
Q 042119          193 IMEVKEQLGEYDCIFLAALVGMSKEEKLTILGHIRKYMKDGGILLVR  239 (286)
Q Consensus       193 ~~~~~~~l~~fD~V~~aalvg~~~~~k~~vl~~l~~~l~pgg~lv~r  239 (286)
                      ..+   ....+|+|+++.-    .....++++.+.+.++||.+++.-
T Consensus        84 ~~~---~~~~aD~Vilav~----~~~~~~v~~~i~~~l~~~~ivv~~  123 (354)
T 1x0v_A           84 VVQ---AAEDADILIFVVP----HQFIGKICDQLKGHLKANATGISL  123 (354)
T ss_dssp             HHH---HHTTCSEEEECCC----GGGHHHHHHHHTTCSCTTCEEEEC
T ss_pred             HHH---HHcCCCEEEEeCC----HHHHHHHHHHHHhhCCCCCEEEEE
Confidence            322   2357899998742    256678999999999888766543

>2d4a_B Malate dehydrogenase; archaea, hyperthermophIle, oxidoreductase; 2.87A {Aeropyrum pernix}

Probab=95.24  E-value=0.034  Score=50.79  Aligned_cols=102  Identities=14%  Similarity=0.247  Sum_probs=62.9

Q ss_pred             EEEEeccCCChhhHHHHHhhcCCCcEEEEEeCChHHHHH-HHHHHHhcCCCCCCeEEEE-ccccchhhcCCCcceeehhh
Q 042119          133 KVAFVGSGPMPLTSIIMAKHHLTSTHFDNFDIDEAANDV-ARSIVASDAEFEGRMKFLT-RDIMEVKEQLGEYDCIFLAA  210 (286)
Q Consensus       133 ~VL~IG~G~lp~tai~lA~~~~~g~~V~~iDid~~ai~~-Ar~~~~~~g~l~~~i~f~~-~D~~~~~~~l~~fD~V~~aa  210 (286)
                      ||..||+|.+|.+.......... .+++-+|++++.++- +.++......+...+++.. .|.    .++.+.|+|++++
T Consensus         1 KI~IiGaG~vG~~~a~~l~~~~l-~el~L~Di~~~~~~g~~~dl~~~~~~~~~~~~i~~t~d~----~a~~~aD~Vi~~a   75 (308)
T 2d4a_B            1 MITILGAGKVGMATAVMLMMRGY-DDLLLIARTPGKPQGEALDLAHAAAELGVDIRISGSNSY----EDMRGSDIVLVTA   75 (308)
T ss_dssp             CEEEECCSHHHHHHHHHHHHHTC-SCEEEECSSTTHHHHHHHHHHHHHHHHTCCCCEEEESCG----GGGTTCSEEEECC
T ss_pred             CEEEECcCHHHHHHHHHHHhCCC-CEEEEEcCChhhHHHHHHHHHHhhhhcCCCeEEEECCCH----HHhCCCCEEEEeC
Confidence            58899999998876554432112 379999999987754 5555443110112334443 453    3567899999886


Q ss_pred             hcc----CC--------hhHHHHHHHHHHhhccCCcEEEEee
Q 042119          211 LVG----MS--------KEEKLTILGHIRKYMKDGGILLVRS  240 (286)
Q Consensus       211 lvg----~~--------~~~k~~vl~~l~~~l~pgg~lv~r~  240 (286)
                      -+.    |+        .+.+.++.+.+.+. .|++.+++-+
T Consensus        76 g~~~k~G~~r~dl~~~n~~i~~~i~~~i~~~-~p~a~iiv~t  116 (308)
T 2d4a_B           76 GIGRKPGMTREQLLEANANTMADLAEKIKAY-AKDAIVVITT  116 (308)
T ss_dssp             SCCCCSSCCTHHHHHHHHHHHHHHHHHHHHH-CTTCEEEECC
T ss_pred             CCCCCCCCcHHHHHHHHHHHHHHHHHHHHHH-CCCeEEEEeC
Confidence            442    21        12266777777776 5999887753

>1wma_A Carbonyl reductase [NADPH] 1; oxidoreductase; HET: AB3 NDP PE5 P33; 1.24A {Homo sapiens} SCOP: c.2.1.2 PDB: 3bhi_A* 3bhj_A* 3bhm_A* 2pfg_A* 1n5d_A* 2hrb_A*

Probab=95.22  E-value=0.13  Score=44.32  Aligned_cols=106  Identities=12%  Similarity=0.098  Sum_probs=69.0

Q ss_pred             CCCEEEEeccCCChhhHHHHHhh-cC-CCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEccccchhh---------
Q 042119          130 QPKKVAFVGSGPMPLTSIIMAKH-HL-TSTHFDNFDIDEAANDVARSIVASDAEFEGRMKFLTRDIMEVKE---------  198 (286)
Q Consensus       130 ~~~~VL~IG~G~lp~tai~lA~~-~~-~g~~V~~iDid~~ai~~Ar~~~~~~g~l~~~i~f~~~D~~~~~~---------  198 (286)
                      .+++|+..|++ .++..- +|++ +. .|++|+.++.+++..+...+.+...|   .++.++.+|+.+...         
T Consensus         3 ~~k~vlITGas-ggIG~~-~a~~L~~~~g~~V~~~~r~~~~~~~~~~~l~~~~---~~~~~~~~Dl~~~~~~~~~~~~~~   77 (276)
T 1wma_A            3 GIHVALVTGGN-KGIGLA-IVRDLCRLFSGDVVLTARDVTRGQAAVQQLQAEG---LSPRFHQLDIDDLQSIRALRDFLR   77 (276)
T ss_dssp             CCCEEEESSCS-SHHHHH-HHHHHHHHSSSEEEEEESSHHHHHHHHHHHHHTT---CCCEEEECCTTCHHHHHHHHHHHH
T ss_pred             CCCEEEEeCCC-cHHHHH-HHHHHHHhcCCeEEEEeCChHHHHHHHHHHHhcC---CeeEEEECCCCCHHHHHHHHHHHH
Confidence            46789998875 455433 3332 23 68999999999988777666666655   578999999876321         


Q ss_pred             -cCCCcceeehhhhccCC-------hhHH-----------HHHHHHHHhhccCCcEEEEee
Q 042119          199 -QLGEYDCIFLAALVGMS-------KEEK-----------LTILGHIRKYMKDGGILLVRS  240 (286)
Q Consensus       199 -~l~~fD~V~~aalvg~~-------~~~k-----------~~vl~~l~~~l~pgg~lv~r~  240 (286)
                       ..+.+|+|+..+.+...       .++.           ..+++.+.+.|+++|.++.-+
T Consensus        78 ~~~g~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~g~iv~~s  138 (276)
T 1wma_A           78 KEYGGLDVLVNNAGIAFKVADPTPFHIQAEVTMKTNFFGTRDVCTELLPLIKPQGRVVNVS  138 (276)
T ss_dssp             HHHSSEEEEEECCCCCCCTTCCSCHHHHHHHHHHHHTHHHHHHHHHHGGGEEEEEEEEEEC
T ss_pred             HhcCCCCEEEECCcccccCCCccccHHHHHhhhheeeeeHHHHHHHHHHhhCCCCEEEEEC
Confidence             12368988865543211       1221           235566777887778877765

>1ur5_A Malate dehydrogenase; oxidoreductase, tricarboxylic acid cycle; HET: NAD; 1.75A {Chloroflexus aurantiacus} SCOP: c.2.1.5 d.162.1.1 PDB: 1uxg_A* 1guy_A* 1uxk_A* 1uxh_A* 1uxj_A* 1uxi_A*

Probab=95.21  E-value=0.11  Score=47.28  Aligned_cols=100  Identities=14%  Similarity=0.181  Sum_probs=60.6

Q ss_pred             CEEEEeccCCChhhHHHHHhhcCCCc-EEEEEeCChHHHHH-HHHHHHh---cCCCCCCeEEEEccccchhhcCCCccee
Q 042119          132 KKVAFVGSGPMPLTSIIMAKHHLTST-HFDNFDIDEAANDV-ARSIVAS---DAEFEGRMKFLTRDIMEVKEQLGEYDCI  206 (286)
Q Consensus       132 ~~VL~IG~G~lp~tai~lA~~~~~g~-~V~~iDid~~ai~~-Ar~~~~~---~g~l~~~i~f~~~D~~~~~~~l~~fD~V  206 (286)
                      .+|..||+|.+|.+.......  .|. .|+.+|++++.++- +.++.+.   .+ ...++++. .|.    .++.+.|+|
T Consensus         3 ~kI~VIGaG~vG~~~a~~la~--~g~~~v~L~Di~~~~~~g~~~dl~~~~~~~~-~~~~i~~t-~d~----~a~~~aD~V   74 (309)
T 1ur5_A            3 KKISIIGAGFVGSTTAHWLAA--KELGDIVLLDIVEGVPQGKALDLYEASPIEG-FDVRVTGT-NNY----ADTANSDVI   74 (309)
T ss_dssp             CEEEEECCSHHHHHHHHHHHH--TTCSEEEEECSSSSHHHHHHHHHHTTHHHHT-CCCCEEEE-SCG----GGGTTCSEE
T ss_pred             CEEEEECCCHHHHHHHHHHHH--CCCCeEEEEeCCccHHHHHHHhHHHhHhhcC-CCeEEEEC-CCH----HHHCCCCEE
Confidence            589999999999876554432  343 69999999987753 2332221   12 12334432 443    345688999


Q ss_pred             ehhhhccC----C--------hhHHHHHHHHHHhhccCCcEEEEee
Q 042119          207 FLAALVGM----S--------KEEKLTILGHIRKYMKDGGILLVRS  240 (286)
Q Consensus       207 ~~aalvg~----~--------~~~k~~vl~~l~~~l~pgg~lv~r~  240 (286)
                      ++++-++.    +        .+-+.++.+.+.+. .|++.+++-+
T Consensus        75 i~a~g~p~~~g~~r~dl~~~n~~i~~~i~~~i~~~-~p~a~vi~~t  119 (309)
T 1ur5_A           75 VVTSGAPRKPGMSREDLIKVNADITRACISQAAPL-SPNAVIIMVN  119 (309)
T ss_dssp             EECCCC--------CHHHHHHHHHHHHHHHHHGGG-CTTCEEEECC
T ss_pred             EEcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHhh-CCCeEEEEcC
Confidence            98864321    1        13344666666666 4899887753

>3pdu_A 3-hydroxyisobutyrate dehydrogenase family protein; gamma-hydroxybutyrate dehydrogenase, succinic semialdehyde R glyoxylate metabolism; HET: NAP; 1.89A {Geobacter sulfurreducens}

Probab=95.19  E-value=0.022  Score=50.79  Aligned_cols=90  Identities=11%  Similarity=0.028  Sum_probs=58.8

Q ss_pred             CEEEEeccCCChhhH-HHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEccccchhhcCCCcceeehhh
Q 042119          132 KKVAFVGSGPMPLTS-IIMAKHHLTSTHFDNFDIDEAANDVARSIVASDAEFEGRMKFLTRDIMEVKEQLGEYDCIFLAA  210 (286)
Q Consensus       132 ~~VL~IG~G~lp~ta-i~lA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~g~l~~~i~f~~~D~~~~~~~l~~fD~V~~aa  210 (286)
                      ++|.+||+|.+|... ..|++   .|.+|+++|++++..+...+    .|     +++ +.|..+..   ...|+|+++.
T Consensus         2 ~~I~iiG~G~mG~~~a~~l~~---~G~~V~~~dr~~~~~~~~~~----~g-----~~~-~~~~~~~~---~~advvi~~v   65 (287)
T 3pdu_A            2 TTYGFLGLGIMGGPMAANLVR---AGFDVTVWNRNPAKCAPLVA----LG-----ARQ-ASSPAEVC---AACDITIAML   65 (287)
T ss_dssp             CCEEEECCSTTHHHHHHHHHH---HTCCEEEECSSGGGGHHHHH----HT-----CEE-CSCHHHHH---HHCSEEEECC
T ss_pred             CeEEEEccCHHHHHHHHHHHH---CCCeEEEEcCCHHHHHHHHH----CC-----Cee-cCCHHHHH---HcCCEEEEEc
Confidence            479999999999753 33444   57899999999998766554    25     222 23433322   3579999764


Q ss_pred             hccCChhHHHHHH---HHHHhhccCCcEEEEee
Q 042119          211 LVGMSKEEKLTIL---GHIRKYMKDGGILLVRS  240 (286)
Q Consensus       211 lvg~~~~~k~~vl---~~l~~~l~pgg~lv~r~  240 (286)
                      --   ...-..++   +.+.+.+++|.+++..+
T Consensus        66 ~~---~~~~~~v~~~~~~l~~~l~~g~~vv~~s   95 (287)
T 3pdu_A           66 AD---PAAAREVCFGANGVLEGIGGGRGYIDMS   95 (287)
T ss_dssp             SS---HHHHHHHHHSTTCGGGTCCTTCEEEECS
T ss_pred             CC---HHHHHHHHcCchhhhhcccCCCEEEECC
Confidence            21   12334556   67778888988877654

>1jw9_B Molybdopterin biosynthesis MOEB protein; MOEB: modified rossmann fold, (2) Cys-X-X-Cys zinc-binding M MOAD: ubiquitin-like fold; 1.70A {Escherichia coli} SCOP: c.111.1.1 PDB: 1jwa_B* 1jwb_B*

Probab=95.16  E-value=0.041  Score=48.56  Aligned_cols=91  Identities=12%  Similarity=0.096  Sum_probs=54.2

Q ss_pred             CCEEEEeccCCChhhHHH-HHhhcCCC-cEEEEEeCCh-------------------HHHHHHHHHHHhcCCCCCCeEEE
Q 042119          131 PKKVAFVGSGPMPLTSII-MAKHHLTS-THFDNFDIDE-------------------AANDVARSIVASDAEFEGRMKFL  189 (286)
Q Consensus       131 ~~~VL~IG~G~lp~tai~-lA~~~~~g-~~V~~iDid~-------------------~ai~~Ar~~~~~~g~l~~~i~f~  189 (286)
                      +++|+.||+|.+|..... |++   .| .+++.+|.|.                   ...+.+.+.+.+.. -.-+++.+
T Consensus        31 ~~~VlVvG~Gg~G~~va~~La~---~Gv~~i~lvD~d~v~~sNl~Rq~l~~~~diG~~Ka~~~~~~l~~~n-p~~~v~~~  106 (249)
T 1jw9_B           31 DSRVLIVGLGGLGCAASQYLAS---AGVGNLTLLDFDTVSLSNLQRQTLHSDATVGQPKVESARDALTRIN-PHIAITPV  106 (249)
T ss_dssp             HCEEEEECCSHHHHHHHHHHHH---HTCSEEEEECCCBCCGGGGGTCTTCCGGGTTSBHHHHHHHHHHHHC-TTSEEEEE
T ss_pred             CCeEEEEeeCHHHHHHHHHHHH---cCCCeEEEEcCCCcccccCCcccccChhhcCcHHHHHHHHHHHHHC-CCcEEEEE
Confidence            579999999977655433 444   46 4899999997                   55566666666554 12345555


Q ss_pred             Eccccc--hhhcCCCcceeehhhhccCChhHHHHHHHHHHh
Q 042119          190 TRDIME--VKEQLGEYDCIFLAALVGMSKEEKLTILGHIRK  228 (286)
Q Consensus       190 ~~D~~~--~~~~l~~fD~V~~aalvg~~~~~k~~vl~~l~~  228 (286)
                      ..+..+  +...+++||+|+.+.-   +.+.+..+.+...+
T Consensus       107 ~~~~~~~~~~~~~~~~DvVi~~~d---~~~~~~~l~~~~~~  144 (249)
T 1jw9_B          107 NALLDDAELAALIAEHDLVLDCTD---NVAVRNQLNAGCFA  144 (249)
T ss_dssp             CSCCCHHHHHHHHHTSSEEEECCS---SHHHHHHHHHHHHH
T ss_pred             eccCCHhHHHHHHhCCCEEEEeCC---CHHHHHHHHHHHHH
Confidence            554432  2223457999996532   23455444444433

>1guz_A Malate dehydrogenase; oxidoreductase, tricarboxylic acid cycle, NAD; HET: NAD; 2.0A {Chlorobium vibrioforme} SCOP: c.2.1.5 d.162.1.1 PDB: 1gv1_A 1gv0_A*

Probab=95.16  E-value=0.13  Score=46.68  Aligned_cols=101  Identities=19%  Similarity=0.239  Sum_probs=59.2

Q ss_pred             CEEEEeccCCChhhHHHHHhhcCCCcEEEEEeCChHHHHHHH-HHHHh---cCCCCCCeEEEE-ccccchhhcCCCccee
Q 042119          132 KKVAFVGSGPMPLTSIIMAKHHLTSTHFDNFDIDEAANDVAR-SIVAS---DAEFEGRMKFLT-RDIMEVKEQLGEYDCI  206 (286)
Q Consensus       132 ~~VL~IG~G~lp~tai~lA~~~~~g~~V~~iDid~~ai~~Ar-~~~~~---~g~l~~~i~f~~-~D~~~~~~~l~~fD~V  206 (286)
                      ++|..||+|.+|.+..........+.+|+.+|++++.++--. .+.+.   .+   ...++.. .|.    .++.+.|+|
T Consensus         1 mkI~VIGaG~vG~~la~~la~~~~g~~V~l~D~~~~~~~~~~~~l~~~~~~~~---~~~~i~~t~d~----~~l~~aDvV   73 (310)
T 1guz_A            1 MKITVIGAGNVGATTAFRLAEKQLARELVLLDVVEGIPQGKALDMYESGPVGL---FDTKVTGSNDY----ADTANSDIV   73 (310)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCCSEEEEECSSSSHHHHHHHHHHTTHHHHT---CCCEEEEESCG----GGGTTCSEE
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCCCEEEEEeCChhHHHHHHHhHHhhhhccc---CCcEEEECCCH----HHHCCCCEE
Confidence            479999999988875554432223789999999998776322 11111   12   1223322 443    235689999


Q ss_pred             ehhhhc----cCChhH--------HHHHHHHHHhhccCCcEEEEee
Q 042119          207 FLAALV----GMSKEE--------KLTILGHIRKYMKDGGILLVRS  240 (286)
Q Consensus       207 ~~aalv----g~~~~~--------k~~vl~~l~~~l~pgg~lv~r~  240 (286)
                      +++.-.    ++...+        ..++.+.+.+. .|++.+++-+
T Consensus        74 iiav~~p~~~g~~r~dl~~~n~~i~~~i~~~i~~~-~~~~~viv~t  118 (310)
T 1guz_A           74 IITAGLPRKPGMTREDLLMKNAGIVKEVTDNIMKH-SKNPIIIVVS  118 (310)
T ss_dssp             EECCSCCCCTTCCHHHHHHHHHHHHHHHHHHHHHH-CSSCEEEECC
T ss_pred             EEeCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHh-CCCcEEEEEc
Confidence            987643    222111        23555666666 5888776643

>1smk_A Malate dehydrogenase, glyoxysomal; tricarboxylic cycle, glyoxysome, NAD, glyoxylate bypass, oxidoreductase; HET: CIT; 2.50A {Citrullus lanatus} PDB: 1sev_A

Probab=95.15  E-value=0.089  Score=48.26  Aligned_cols=104  Identities=20%  Similarity=0.194  Sum_probs=58.9

Q ss_pred             CCCEEEEec-cCCChhhHHHHHhhcCCC--cEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEccccchhhcCCCccee
Q 042119          130 QPKKVAFVG-SGPMPLTSIIMAKHHLTS--THFDNFDIDEAANDVARSIVASDAEFEGRMKFLTRDIMEVKEQLGEYDCI  206 (286)
Q Consensus       130 ~~~~VL~IG-~G~lp~tai~lA~~~~~g--~~V~~iDid~~ai~~Ar~~~~~~g~l~~~i~f~~~D~~~~~~~l~~fD~V  206 (286)
                      .+.+|+.+| +|..|.+.......  .|  .+|+.+|++++ ...+.++... . ...++..+.+ ..+....+.+.|+|
T Consensus         7 ~~mKI~ViGAaG~VG~~la~~L~~--~g~~~ev~l~Di~~~-~~~~~dL~~~-~-~~~~v~~~~~-t~d~~~al~gaDvV   80 (326)
T 1smk_A            7 PGFKVAILGAAGGIGQPLAMLMKM--NPLVSVLHLYDVVNA-PGVTADISHM-D-TGAVVRGFLG-QQQLEAALTGMDLI   80 (326)
T ss_dssp             -CEEEEEETTTSTTHHHHHHHHHH--CTTEEEEEEEESSSH-HHHHHHHHTS-C-SSCEEEEEES-HHHHHHHHTTCSEE
T ss_pred             CCCEEEEECCCChHHHHHHHHHHh--CCCCCEEEEEeCCCc-HhHHHHhhcc-c-ccceEEEEeC-CCCHHHHcCCCCEE
Confidence            467999999 89888886654432  44  78999999987 3334443321 1 1123444323 12233345689999


Q ss_pred             ehhhhcc----CChh--------HHHHHHHHHHhhccCCcEEEEee
Q 042119          207 FLAALVG----MSKE--------EKLTILGHIRKYMKDGGILLVRS  240 (286)
Q Consensus       207 ~~aalvg----~~~~--------~k~~vl~~l~~~l~pgg~lv~r~  240 (286)
                      |.++-+.    ++..        --..+.+.+.+. .|++.+++.+
T Consensus        81 i~~ag~~~~~g~~r~dl~~~N~~~~~~i~~~i~~~-~p~~~viv~S  125 (326)
T 1smk_A           81 IVPAGVPRKPGMTRDDLFKINAGIVKTLCEGIAKC-CPRAIVNLIS  125 (326)
T ss_dssp             EECCCCCCCSSCCCSHHHHHHHHHHHHHHHHHHHH-CTTSEEEECC
T ss_pred             EEcCCcCCCCCCCHHHHHHHHHHHHHHHHHHHHhh-CCCeEEEEEC
Confidence            9876542    2111        112333444433 5788888754

>3h9u_A Adenosylhomocysteinase; NAD CO-factor complex, structural genomics, SGC stockholm, S genomics consortium, SGC, hydrolase, NAD; HET: NAD ADN PG4; 1.90A {Trypanosoma brucei} PDB: 3g1u_A* 1b3r_A* 1k0u_A* 1ky4_A* 2h5l_A* 1xwf_A* 1d4f_A* 1ky5_A* 3nj4_A* 1li4_A* 1a7a_A*

Probab=95.13  E-value=0.015  Score=56.03  Aligned_cols=111  Identities=11%  Similarity=0.045  Sum_probs=71.3

Q ss_pred             ccchhhhhHHHHHHHHhcC--CCCCCEEEEeccCCChhhHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCe
Q 042119          109 YGNYVKLSKLEYTILSENG--VVQPKKVAFVGSGPMPLTSIIMAKHHLTSTHFDNFDIDEAANDVARSIVASDAEFEGRM  186 (286)
Q Consensus       109 ~~ny~~l~~~E~~~l~~~~--~~~~~~VL~IG~G~lp~tai~lA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~g~l~~~i  186 (286)
                      ++|+..+.+.-...+.+..  .-.+++|..||.|.+|......++.  .|++|+++|+++.....|.    ..|     .
T Consensus       187 ~Dn~~Gt~~slldgi~ratg~~L~GktVgIiG~G~IG~~vA~~Lka--~Ga~Viv~D~~p~~a~~A~----~~G-----~  255 (436)
T 3h9u_A          187 FDNLYGCRESLVDGIKRATDVMIAGKTACVCGYGDVGKGCAAALRG--FGARVVVTEVDPINALQAA----MEG-----Y  255 (436)
T ss_dssp             THHHHHHHHHHHHHHHHHHCCCCTTCEEEEECCSHHHHHHHHHHHH--TTCEEEEECSCHHHHHHHH----HTT-----C
T ss_pred             hhccccchHHHHHHHHHhcCCcccCCEEEEEeeCHHHHHHHHHHHH--CCCEEEEECCChhhhHHHH----HhC-----C
Confidence            4666665555455554432  2468999999999999988888874  6899999999987654443    345     1


Q ss_pred             EEEEccccchhhcCCCcceeehhhhccCChhHHHHHH-HHHHhhccCCcEEEEeecCc
Q 042119          187 KFLTRDIMEVKEQLGEYDCIFLAALVGMSKEEKLTIL-GHIRKYMKDGGILLVRSAKG  243 (286)
Q Consensus       187 ~f~~~D~~~~~~~l~~fD~V~~aalvg~~~~~k~~vl-~~l~~~l~pgg~lv~r~~~g  243 (286)
                      ++  .+   +...+...|+|+.+.--      + .++ .+..+.||||++|+-- ++|
T Consensus       256 ~~--~s---L~eal~~ADVVilt~gt------~-~iI~~e~l~~MK~gAIVINv-gRg  300 (436)
T 3h9u_A          256 QV--LL---VEDVVEEAHIFVTTTGN------D-DIITSEHFPRMRDDAIVCNI-GHF  300 (436)
T ss_dssp             EE--CC---HHHHTTTCSEEEECSSC------S-CSBCTTTGGGCCTTEEEEEC-SSS
T ss_pred             ee--cC---HHHHHhhCCEEEECCCC------c-CccCHHHHhhcCCCcEEEEe-CCC
Confidence            22  23   33445678999864311      1 111 2456788999876654 455

>1txg_A Glycerol-3-phosphate dehydrogenase [NAD(P)+]; oxidoreductase; 1.70A {Archaeoglobus fulgidus} SCOP: a.100.1.6 c.2.1.6

Probab=95.11  E-value=0.03  Score=50.51  Aligned_cols=93  Identities=10%  Similarity=0.142  Sum_probs=57.6

Q ss_pred             CEEEEeccCCChhhHH-HHHhhcCCCcEEEEEeC--ChHHHHHHHHHHHhcCCCC-------CCeEEEEccccchhhcCC
Q 042119          132 KKVAFVGSGPMPLTSI-IMAKHHLTSTHFDNFDI--DEAANDVARSIVASDAEFE-------GRMKFLTRDIMEVKEQLG  201 (286)
Q Consensus       132 ~~VL~IG~G~lp~tai-~lA~~~~~g~~V~~iDi--d~~ai~~Ar~~~~~~g~l~-------~~i~f~~~D~~~~~~~l~  201 (286)
                      ++|.+||+|.+|.... .|++   .|.+|+.+|+  +++.++..++    .| ..       .+++..  +..+......
T Consensus         1 m~I~iiG~G~mG~~~a~~L~~---~g~~V~~~~r~~~~~~~~~~~~----~~-~~~~~g~~~~~~~~~--~~~~~~~~~~   70 (335)
T 1txg_A            1 MIVSILGAGAMGSALSVPLVD---NGNEVRIWGTEFDTEILKSISA----GR-EHPRLGVKLNGVEIF--WPEQLEKCLE   70 (335)
T ss_dssp             CEEEEESCCHHHHHHHHHHHH---HCCEEEEECCGGGHHHHHHHHT----TC-CBTTTTBCCCSEEEE--CGGGHHHHHT
T ss_pred             CEEEEECcCHHHHHHHHHHHh---CCCeEEEEEccCCHHHHHHHHH----hC-cCcccCccccceEEe--cHHhHHHHHh
Confidence            4799999998876533 3444   5789999999  8887654433    33 10       112221  1101222235


Q ss_pred             CcceeehhhhccCChhHHHHHHHHHHhhccCCcEEEEe
Q 042119          202 EYDCIFLAALVGMSKEEKLTILGHIRKYMKDGGILLVR  239 (286)
Q Consensus       202 ~fD~V~~aalvg~~~~~k~~vl~~l~~~l~pgg~lv~r  239 (286)
                      .+|+|+++.--    .....+++.+.+ ++||.+++.-
T Consensus        71 ~~D~vi~~v~~----~~~~~v~~~i~~-l~~~~~vv~~  103 (335)
T 1txg_A           71 NAEVVLLGVST----DGVLPVMSRILP-YLKDQYIVLI  103 (335)
T ss_dssp             TCSEEEECSCG----GGHHHHHHHHTT-TCCSCEEEEC
T ss_pred             cCCEEEEcCCh----HHHHHHHHHHhc-CCCCCEEEEE
Confidence            78999986432    355678888988 8888766543

>3cky_A 2-hydroxymethyl glutarate dehydrogenase; rossmann fold, two domain enzyme, oxidoreductase; 2.30A {Eubacterium barkeri}

Probab=95.10  E-value=0.039  Score=49.17  Aligned_cols=90  Identities=20%  Similarity=0.232  Sum_probs=57.1

Q ss_pred             CCEEEEeccCCChhhHHH-HHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEccccchhhcCCCcceeehh
Q 042119          131 PKKVAFVGSGPMPLTSII-MAKHHLTSTHFDNFDIDEAANDVARSIVASDAEFEGRMKFLTRDIMEVKEQLGEYDCIFLA  209 (286)
Q Consensus       131 ~~~VL~IG~G~lp~tai~-lA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~g~l~~~i~f~~~D~~~~~~~l~~fD~V~~a  209 (286)
                      ..+|.+||+|.+|..-.. +++   .|.+|+.+|++++..+..++    .|     +.. ..|..+.   +...|+|+++
T Consensus         4 ~~~i~iiG~G~~G~~~a~~l~~---~g~~V~~~~~~~~~~~~~~~----~g-----~~~-~~~~~~~---~~~~D~vi~~   67 (301)
T 3cky_A            4 SIKIGFIGLGAMGKPMAINLLK---EGVTVYAFDLMEANVAAVVA----QG-----AQA-CENNQKV---AAASDIIFTS   67 (301)
T ss_dssp             CCEEEEECCCTTHHHHHHHHHH---TTCEEEEECSSHHHHHHHHT----TT-----CEE-CSSHHHH---HHHCSEEEEC
T ss_pred             CCEEEEECccHHHHHHHHHHHH---CCCeEEEEeCCHHHHHHHHH----CC-----Cee-cCCHHHH---HhCCCEEEEE
Confidence            479999999998875433 333   57899999999987664432    25     222 2333232   2358999987


Q ss_pred             hhccCChhHHHHHHH---HHHhhccCCcEEEEe
Q 042119          210 ALVGMSKEEKLTILG---HIRKYMKDGGILLVR  239 (286)
Q Consensus       210 alvg~~~~~k~~vl~---~l~~~l~pgg~lv~r  239 (286)
                      .-.   ...-..++.   .+.+.++||.+++.-
T Consensus        68 vp~---~~~~~~v~~~~~~l~~~l~~~~~vv~~   97 (301)
T 3cky_A           68 LPN---AGIVETVMNGPGGVLSACKAGTVIVDM   97 (301)
T ss_dssp             CSS---HHHHHHHHHSTTCHHHHSCTTCEEEEC
T ss_pred             CCC---HHHHHHHHcCcchHhhcCCCCCEEEEC
Confidence            422   122345554   677888888876653

>1u8x_X Maltose-6'-phosphate glucosidase; structural genomics, PSI, protein structure initiative, MCSG glucosidase, NAD-dependent; HET: G6P NAD; 2.05A {Bacillus subtilis} SCOP: c.2.1.5 d.162.1.2

Probab=95.09  E-value=0.057  Score=52.36  Aligned_cols=76  Identities=17%  Similarity=0.288  Sum_probs=49.0

Q ss_pred             CCEEEEeccCCChhhHH--HHHhh--cCCCcEEEEEeCChHHHHHHHHHHHh----cCCCCCCeEEEE-ccccchhhcCC
Q 042119          131 PKKVAFVGSGPMPLTSI--IMAKH--HLTSTHFDNFDIDEAANDVARSIVAS----DAEFEGRMKFLT-RDIMEVKEQLG  201 (286)
Q Consensus       131 ~~~VL~IG~G~lp~tai--~lA~~--~~~g~~V~~iDid~~ai~~Ar~~~~~----~g~l~~~i~f~~-~D~~~~~~~l~  201 (286)
                      ..+|..||+|....+++  .|+++  .+++.+|+-+|++++.++......+.    .+   ...++.. .|.   ...+.
T Consensus        28 ~~KIaVIGaGsv~~~ala~~L~~~~~~l~~~eV~L~Di~~e~~~~~~~~~~~~l~~~~---~~~~I~~t~D~---~eal~  101 (472)
T 1u8x_X           28 SFSIVIAGGGSTFTPGIVLMLLDHLEEFPIRKLKLYDNDKERQDRIAGACDVFIREKA---PDIEFAATTDP---EEAFT  101 (472)
T ss_dssp             CEEEEEECTTSSSHHHHHHHHHHTTTTSCEEEEEEECSCHHHHHHHHHHHHHHHHHHC---TTSEEEEESCH---HHHHS
T ss_pred             CCEEEEECCCHHHHHHHHHHHHhCCCCCCCCEEEEEeCCHHHHHHHHHHHHHHhccCC---CCCEEEEECCH---HHHHc
Confidence            45999999998633323  46653  23478899999999987765544432    34   2344443 453   23456


Q ss_pred             Ccceeehhhhc
Q 042119          202 EYDCIFLAALV  212 (286)
Q Consensus       202 ~fD~V~~aalv  212 (286)
                      +.|+|++++-+
T Consensus       102 ~AD~VViaag~  112 (472)
T 1u8x_X          102 DVDFVMAHIRV  112 (472)
T ss_dssp             SCSEEEECCCT
T ss_pred             CCCEEEEcCCC
Confidence            78999988754

>2pgd_A 6-phosphogluconate dehydrogenase; oxidoreductase (CHOH(D)-NADP+(A)); 2.00A {Ovis aries} SCOP: a.100.1.1 c.2.1.6 PDB: 1pgo_A* 1pgp_A* 1pgq_A* 1pgn_A 2jkv_A*

Probab=95.09  E-value=0.033  Score=53.92  Aligned_cols=96  Identities=14%  Similarity=0.119  Sum_probs=61.8

Q ss_pred             CEEEEeccCCChhhHH-HHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEccccchhhcCCCcceeehhh
Q 042119          132 KKVAFVGSGPMPLTSI-IMAKHHLTSTHFDNFDIDEAANDVARSIVASDAEFEGRMKFLTRDIMEVKEQLGEYDCIFLAA  210 (286)
Q Consensus       132 ~~VL~IG~G~lp~tai-~lA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~g~l~~~i~f~~~D~~~~~~~l~~fD~V~~aa  210 (286)
                      ++|.+||+|.+|.... .|++   .|.+|+++|++++.++...+. +..|   ..+. .+.|..++...+...|+|+++.
T Consensus         3 m~IgvIG~G~mG~~lA~~La~---~G~~V~v~dr~~~~~~~l~~~-~~~g---~gi~-~~~~~~e~v~~l~~aDvVilaV   74 (482)
T 2pgd_A            3 ADIALIGLAVMGQNLILNMND---HGFVVCAFNRTVSKVDDFLAN-EAKG---TKVL-GAHSLEEMVSKLKKPRRIILLV   74 (482)
T ss_dssp             BSEEEECCSHHHHHHHHHHHH---TTCCEEEECSSTHHHHHHHHT-TTTT---SSCE-ECSSHHHHHHHBCSSCEEEECS
T ss_pred             CeEEEEChHHHHHHHHHHHHH---CCCeEEEEeCCHHHHHHHHhc-cccC---CCeE-EeCCHHHHHhhccCCCEEEEeC
Confidence            5799999998887533 3444   678999999999887655441 0011   2233 2345444433345789999763


Q ss_pred             hccCChhHHHHHHHHHHhhccCCcEEEE
Q 042119          211 LVGMSKEEKLTILGHIRKYMKDGGILLV  238 (286)
Q Consensus       211 lvg~~~~~k~~vl~~l~~~l~pgg~lv~  238 (286)
                      --   ...-..+++.+.+.++||.+|+-
T Consensus        75 p~---~~~v~~vl~~l~~~l~~g~iII~   99 (482)
T 2pgd_A           75 KA---GQAVDNFIEKLVPLLDIGDIIID   99 (482)
T ss_dssp             CT---THHHHHHHHHHHHHCCTTCEEEE
T ss_pred             CC---hHHHHHHHHHHHhhcCCCCEEEE
Confidence            21   12345688899999999886664

>2vz8_A Fatty acid synthase; transferase, phosphopantetheine, multienzyme, megasynthase, fatty acid synthesis; 3.2A {Sus scrofa} PDB: 2vz9_A*

Probab=95.05  E-value=0.017  Score=66.31  Aligned_cols=102  Identities=12%  Similarity=0.027  Sum_probs=70.4

Q ss_pred             cCCCCCCEEEEec-cCCChhhHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCe-EEEEccccc-hhhcC--
Q 042119          126 NGVVQPKKVAFVG-SGPMPLTSIIMAKHHLTSTHFDNFDIDEAANDVARSIVASDAEFEGRM-KFLTRDIME-VKEQL--  200 (286)
Q Consensus       126 ~~~~~~~~VL~IG-~G~lp~tai~lA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~g~l~~~i-~f~~~D~~~-~~~~l--  200 (286)
                      ..++++++||..| +|++|+.++.+|+.  .|++|++.+.+++..+.+++....+|.  +.+ .....|..+ +....  
T Consensus      1663 a~l~~Ge~VLI~gaaGgVG~aAiqlAk~--~Ga~Viat~~s~~k~~~l~~~~~~lga--~~v~~~~~~~~~~~i~~~t~g 1738 (2512)
T 2vz8_A         1663 GRMQPGESVLIHSGSGGVGQAAIAIALS--RGCRVFTTVGSAEKRAYLQARFPQLDE--TCFANSRDTSFEQHVLRHTAG 1738 (2512)
T ss_dssp             TCCCTTCEEEETTTTSHHHHHHHHHHHH--TTCEEEEEESCHHHHHHHHHHCTTCCS--TTEEESSSSHHHHHHHHTTTS
T ss_pred             hcCCCCCEEEEEeCChHHHHHHHHHHHH--cCCEEEEEeCChhhhHHHHhhcCCCCc--eEEecCCCHHHHHHHHHhcCC
Confidence            3468999999997 59999999999994  799999999999988887765433451  222 111111111 11111  


Q ss_pred             CCcceeehhhhccCChhHHHHHHHHHHhhccCCcEEEEe
Q 042119          201 GEYDCIFLAALVGMSKEEKLTILGHIRKYMKDGGILLVR  239 (286)
Q Consensus       201 ~~fD~V~~aalvg~~~~~k~~vl~~l~~~l~pgg~lv~r  239 (286)
                      .++|+|+.+.  +   .   +.++...+.++|||+++.-
T Consensus      1739 ~GvDvVld~~--g---~---~~l~~~l~~L~~~Gr~V~i 1769 (2512)
T 2vz8_A         1739 KGVDLVLNSL--A---E---EKLQASVRCLAQHGRFLEI 1769 (2512)
T ss_dssp             CCEEEEEECC--C---H---HHHHHHHTTEEEEEEEEEC
T ss_pred             CCceEEEECC--C---c---hHHHHHHHhcCCCcEEEEe
Confidence            3699999642  2   1   4578889999999998874

>3o38_A Short chain dehydrogenase; tuberculosis, ortholog from A non-pathogenic dehydrogenase, structural genomics; 1.95A {Mycobacterium smegmatis}

Probab=95.05  E-value=0.18  Score=43.82  Aligned_cols=78  Identities=18%  Similarity=0.141  Sum_probs=56.5

Q ss_pred             CCCEEEEecc-C-CChhh-HHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEccccchhh--------
Q 042119          130 QPKKVAFVGS-G-PMPLT-SIIMAKHHLTSTHFDNFDIDEAANDVARSIVASDAEFEGRMKFLTRDIMEVKE--------  198 (286)
Q Consensus       130 ~~~~VL~IG~-G-~lp~t-ai~lA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~g~l~~~i~f~~~D~~~~~~--------  198 (286)
                      .+++|+..|+ | .+|.. +..|++   .|++|+.+|.+++..+...+.++..+  ..++.++.+|+.+...        
T Consensus        21 ~~k~vlITGasg~GIG~~~a~~l~~---~G~~V~~~~r~~~~~~~~~~~l~~~~--~~~~~~~~~Dl~~~~~v~~~~~~~   95 (266)
T 3o38_A           21 KGKVVLVTAAAGTGIGSTTARRALL---EGADVVISDYHERRLGETRDQLADLG--LGRVEAVVCDVTSTEAVDALITQT   95 (266)
T ss_dssp             TTCEEEESSCSSSSHHHHHHHHHHH---TTCEEEEEESCHHHHHHHHHHHHTTC--SSCEEEEECCTTCHHHHHHHHHHH
T ss_pred             CCCEEEEECCCCCchHHHHHHHHHH---CCCEEEEecCCHHHHHHHHHHHHhcC--CCceEEEEeCCCCHHHHHHHHHHH
Confidence            5789999998 6 35543 334555   79999999999998888777776655  2689999999976321        


Q ss_pred             --cCCCcceeehhhhc
Q 042119          199 --QLGEYDCIFLAALV  212 (286)
Q Consensus       199 --~l~~fD~V~~aalv  212 (286)
                        .++..|+++..+.+
T Consensus        96 ~~~~g~id~li~~Ag~  111 (266)
T 3o38_A           96 VEKAGRLDVLVNNAGL  111 (266)
T ss_dssp             HHHHSCCCEEEECCCC
T ss_pred             HHHhCCCcEEEECCCc
Confidence              22468988866543

>3dfz_A SIRC, precorrin-2 dehydrogenase; NAD dehydrogenase, cobalamin biosynthesis, NAD, oxidoreducta porphyrin biosynthesis; 2.30A {Bacillus megaterium}

Probab=95.04  E-value=0.04  Score=48.26  Aligned_cols=104  Identities=13%  Similarity=0.116  Sum_probs=61.2

Q ss_pred             CCCEEEEeccCCChhhHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEccccchhhcCCCcceeehh
Q 042119          130 QPKKVAFVGSGPMPLTSIIMAKHHLTSTHFDNFDIDEAANDVARSIVASDAEFEGRMKFLTRDIMEVKEQLGEYDCIFLA  209 (286)
Q Consensus       130 ~~~~VL~IG~G~lp~tai~lA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~g~l~~~i~f~~~D~~~~~~~l~~fD~V~~a  209 (286)
                      .+++||.||+|..+...+....  ..|+.|+.|+.+...  ..+++.+ .|    +++++..+-.  +.++.++|+||.+
T Consensus        30 ~gk~VLVVGgG~va~~ka~~Ll--~~GA~VtVvap~~~~--~l~~l~~-~~----~i~~i~~~~~--~~dL~~adLVIaA   98 (223)
T 3dfz_A           30 KGRSVLVVGGGTIATRRIKGFL--QEGAAITVVAPTVSA--EINEWEA-KG----QLRVKRKKVG--EEDLLNVFFIVVA   98 (223)
T ss_dssp             TTCCEEEECCSHHHHHHHHHHG--GGCCCEEEECSSCCH--HHHHHHH-TT----SCEEECSCCC--GGGSSSCSEEEEC
T ss_pred             CCCEEEEECCCHHHHHHHHHHH--HCCCEEEEECCCCCH--HHHHHHH-cC----CcEEEECCCC--HhHhCCCCEEEEC
Confidence            5789999999987766554433  268999999876431  1233332 23    5788876653  4567789999965


Q ss_pred             hhccCChhHHHHHHHHHHhhccCCcEEEEeec-CcceeeecccC
Q 042119          210 ALVGMSKEEKLTILGHIRKYMKDGGILLVRSA-KGARAFLYPVV  252 (286)
Q Consensus       210 alvg~~~~~k~~vl~~l~~~l~pgg~lv~r~~-~g~r~~lyp~v  252 (286)
                      .-.   .+    +=..+....+ -|+++-+-. .....|..|.+
T Consensus        99 T~d---~~----~N~~I~~~ak-~gi~VNvvD~p~~~~f~~Pai  134 (223)
T 3dfz_A           99 TND---QA----VNKFVKQHIK-NDQLVNMASSFSDGNIQIPAQ  134 (223)
T ss_dssp             CCC---TH----HHHHHHHHSC-TTCEEEC-----CCSEECCEE
T ss_pred             CCC---HH----HHHHHHHHHh-CCCEEEEeCCcccCeEEEeeE
Confidence            321   12    2233444444 566655532 33456888854

>3qsg_A NAD-binding phosphogluconate dehydrogenase-like P; structural genomics, PSI-biology, midwest center for structu genomics; 1.90A {Alicyclobacillus acidocaldarius subsp}

Probab=95.02  E-value=0.051  Score=49.29  Aligned_cols=90  Identities=18%  Similarity=0.256  Sum_probs=58.0

Q ss_pred             CCEEEEeccCCChhhHH-HHHhhcCCCc-EEEEEeCC--hHHHHHHHHHHHhcCCCCCCeEEEEccccchhhcCCCccee
Q 042119          131 PKKVAFVGSGPMPLTSI-IMAKHHLTST-HFDNFDID--EAANDVARSIVASDAEFEGRMKFLTRDIMEVKEQLGEYDCI  206 (286)
Q Consensus       131 ~~~VL~IG~G~lp~tai-~lA~~~~~g~-~V~~iDid--~~ai~~Ar~~~~~~g~l~~~i~f~~~D~~~~~~~l~~fD~V  206 (286)
                      .++|.+||+|.+|.... .|++   .|. +|+++|++  ++..+.++    ..|     +.+ +.+..+.   ....|+|
T Consensus        24 ~~~I~iIG~G~mG~~~A~~L~~---~G~~~V~~~dr~~~~~~~~~~~----~~g-----~~~-~~~~~e~---~~~aDvV   87 (312)
T 3qsg_A           24 AMKLGFIGFGEAASAIASGLRQ---AGAIDMAAYDAASAESWRPRAE----ELG-----VSC-KASVAEV---AGECDVI   87 (312)
T ss_dssp             -CEEEEECCSHHHHHHHHHHHH---HSCCEEEEECSSCHHHHHHHHH----HTT-----CEE-CSCHHHH---HHHCSEE
T ss_pred             CCEEEEECccHHHHHHHHHHHH---CCCCeEEEEcCCCCHHHHHHHH----HCC-----CEE-eCCHHHH---HhcCCEE
Confidence            46999999998886532 3444   467 99999997  46555443    345     222 2333332   2357999


Q ss_pred             ehhhhccCChhHHHHHHHHHHhhccCCcEEEEee
Q 042119          207 FLAALVGMSKEEKLTILGHIRKYMKDGGILLVRS  240 (286)
Q Consensus       207 ~~aalvg~~~~~k~~vl~~l~~~l~pgg~lv~r~  240 (286)
                      |++.--    ..-.++++.+.+.+++|.+++-.+
T Consensus        88 i~~vp~----~~~~~~~~~l~~~l~~~~ivvd~s  117 (312)
T 3qsg_A           88 FSLVTA----QAALEVAQQAGPHLCEGALYADFT  117 (312)
T ss_dssp             EECSCT----TTHHHHHHHHGGGCCTTCEEEECC
T ss_pred             EEecCc----hhHHHHHHhhHhhcCCCCEEEEcC
Confidence            976432    233457899999999998877543

>1evy_A Glycerol-3-phosphate dehydrogenase; rossmann fold, oxidoreductase; HET: MYS; 1.75A {Leishmania mexicana} SCOP: a.100.1.6 c.2.1.6 PDB: 1evz_A* 1jdj_A* 1m66_A* 1m67_A* 1n1e_A* 1n1g_A*

Probab=95.00  E-value=0.031  Score=51.53  Aligned_cols=96  Identities=15%  Similarity=0.203  Sum_probs=58.8

Q ss_pred             EEEEeccCCChhhHHH-HHhhcCCCcEEEEEeCChHHHHHHHHHHHh---c-CC-CCCCeEEEEccccchhhcCCCccee
Q 042119          133 KVAFVGSGPMPLTSII-MAKHHLTSTHFDNFDIDEAANDVARSIVAS---D-AE-FEGRMKFLTRDIMEVKEQLGEYDCI  206 (286)
Q Consensus       133 ~VL~IG~G~lp~tai~-lA~~~~~g~~V~~iDid~~ai~~Ar~~~~~---~-g~-l~~~i~f~~~D~~~~~~~l~~fD~V  206 (286)
                      +|.+||+|.+|..... |++   .|.+|+.+|++++.++..++.-..   . |. +..++.+ +.|..+   ....+|+|
T Consensus        17 kI~iIG~G~mG~~la~~L~~---~G~~V~~~~r~~~~~~~l~~~~~~~~~~~~~~~~~~~~~-~~~~~~---~~~~aDvV   89 (366)
T 1evy_A           17 KAVVFGSGAFGTALAMVLSK---KCREVCVWHMNEEEVRLVNEKRENVLFLKGVQLASNITF-TSDVEK---AYNGAEII   89 (366)
T ss_dssp             EEEEECCSHHHHHHHHHHTT---TEEEEEEECSCHHHHHHHHHHTBCTTTSTTCBCCTTEEE-ESCHHH---HHTTCSSE
T ss_pred             eEEEECCCHHHHHHHHHHHh---CCCEEEEEECCHHHHHHHHHcCcccccccccccccceee-eCCHHH---HHcCCCEE
Confidence            8999999988765322 333   578999999999887665543100   0 10 0112332 233322   23478999


Q ss_pred             ehhhhccCChhHHHHHHHH----HHhhccC-CcEEEEe
Q 042119          207 FLAALVGMSKEEKLTILGH----IRKYMKD-GGILLVR  239 (286)
Q Consensus       207 ~~aalvg~~~~~k~~vl~~----l~~~l~p-gg~lv~r  239 (286)
                      |++.-    .....+++..    +...++| |.+++.-
T Consensus        90 ilav~----~~~~~~v~~~~~~gl~~~l~~~~~ivv~~  123 (366)
T 1evy_A           90 LFVIP----TQFLRGFFEKSGGNLIAYAKEKQVPVLVC  123 (366)
T ss_dssp             EECCC----HHHHHHHHHHHCHHHHHHHHHHTCCEEEC
T ss_pred             EECCC----hHHHHHHHHHhHHHHHHhcCccCCEEEEE
Confidence            97732    2455678888    8888888 7765543

>2izz_A Pyrroline-5-carboxylate reductase 1; amino-acid biosynthesis, NADP, oxidoreductase, proline biosy; HET: NAD; 1.95A {Homo sapiens} PDB: 2ger_A 2gr9_A* 2gra_A*

Probab=94.98  E-value=0.049  Score=49.60  Aligned_cols=88  Identities=20%  Similarity=0.235  Sum_probs=58.1

Q ss_pred             CCEEEEeccCCChhhHH-HHHhhcCCC----cEEEEEeCChH--HHHHHHHHHHhcCCCCCCeEEEEccccchhhcCCCc
Q 042119          131 PKKVAFVGSGPMPLTSI-IMAKHHLTS----THFDNFDIDEA--ANDVARSIVASDAEFEGRMKFLTRDIMEVKEQLGEY  203 (286)
Q Consensus       131 ~~~VL~IG~G~lp~tai-~lA~~~~~g----~~V~~iDid~~--ai~~Ar~~~~~~g~l~~~i~f~~~D~~~~~~~l~~f  203 (286)
                      .++|.+||+|.+|..-. .|++   .|    .+|+.+|++++  ..+..+    ..|     +++ +.|..+.   ....
T Consensus        22 ~mkI~iIG~G~mG~ala~~L~~---~G~~~~~~V~v~~r~~~~~~~~~l~----~~G-----~~~-~~~~~e~---~~~a   85 (322)
T 2izz_A           22 SMSVGFIGAGQLAFALAKGFTA---AGVLAAHKIMASSPDMDLATVSALR----KMG-----VKL-TPHNKET---VQHS   85 (322)
T ss_dssp             CCCEEEESCSHHHHHHHHHHHH---TTSSCGGGEEEECSCTTSHHHHHHH----HHT-----CEE-ESCHHHH---HHHC
T ss_pred             CCEEEEECCCHHHHHHHHHHHH---CCCCCcceEEEECCCccHHHHHHHH----HcC-----CEE-eCChHHH---hccC
Confidence            46899999998876533 2333   45    68999999985  544443    346     232 2343222   2368


Q ss_pred             ceeehhhhccCChhHHHHHHHHHHhhccCCcEEEE
Q 042119          204 DCIFLAALVGMSKEEKLTILGHIRKYMKDGGILLV  238 (286)
Q Consensus       204 D~V~~aalvg~~~~~k~~vl~~l~~~l~pgg~lv~  238 (286)
                      |+||++.-    .....++++.+.+.++||.+++-
T Consensus        86 DvVilav~----~~~~~~vl~~l~~~l~~~~ivvs  116 (322)
T 2izz_A           86 DVLFLAVK----PHIIPFILDEIGADIEDRHIVVS  116 (322)
T ss_dssp             SEEEECSC----GGGHHHHHHHHGGGCCTTCEEEE
T ss_pred             CEEEEEeC----HHHHHHHHHHHHhhcCCCCEEEE
Confidence            99998743    25667888999888888876554

>2oo3_A Protein involved in catabolism of external DNA; structural genomics, unknown function, PSI-2, protein structure initiative; 2.00A {Legionella pneumophila subsp} SCOP: c.66.1.59

Probab=94.95  E-value=0.015  Score=52.92  Aligned_cols=93  Identities=13%  Similarity=0.095  Sum_probs=63.9

Q ss_pred             EEeccCCChhhHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEccccchhhc----CCCcceeehhh
Q 042119          135 AFVGSGPMPLTSIIMAKHHLTSTHFDNFDIDEAANDVARSIVASDAEFEGRMKFLTRDIMEVKEQ----LGEYDCIFLAA  210 (286)
Q Consensus       135 L~IG~G~lp~tai~lA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~g~l~~~i~f~~~D~~~~~~~----l~~fD~V~~aa  210 (286)
                      ++-|||.+++-+   .+   .+.+++.+|.++++.+.-+++++.    .++++++.+|+......    -..||+||++-
T Consensus        98 lfaGSGaLgiEa---LS---~~d~~vfvE~~~~a~~~L~~Nl~~----~~~~~V~~~D~~~~L~~l~~~~~~fdLVfiDP  167 (283)
T 2oo3_A           98 YYPGSPYFAINQ---LR---SQDRLYLCELHPTEYNFLLKLPHF----NKKVYVNHTDGVSKLNALLPPPEKRGLIFIDP  167 (283)
T ss_dssp             EEECHHHHHHHH---SC---TTSEEEEECCSHHHHHHHTTSCCT----TSCEEEECSCHHHHHHHHCSCTTSCEEEEECC
T ss_pred             EeCCcHHHHHHH---cC---CCCeEEEEeCCHHHHHHHHHHhCc----CCcEEEEeCcHHHHHHHhcCCCCCccEEEECC
Confidence            677887554432   22   568999999999999999988764    36899999998764432    12599999985


Q ss_pred             hccCChhHHHHHHHHHHh--hccCCcEEEE
Q 042119          211 LVGMSKEEKLTILGHIRK--YMKDGGILLV  238 (286)
Q Consensus       211 lvg~~~~~k~~vl~~l~~--~l~pgg~lv~  238 (286)
                      --+. +.+..++++.+.+  ...|+|++++
T Consensus       168 PYe~-k~~~~~vl~~L~~~~~r~~~Gi~v~  196 (283)
T 2oo3_A          168 SYER-KEEYKEIPYAIKNAYSKFSTGLYCV  196 (283)
T ss_dssp             CCCS-TTHHHHHHHHHHHHHHHCTTSEEEE
T ss_pred             CCCC-CcHHHHHHHHHHHhCccCCCeEEEE
Confidence            3221 2355666766665  3456776665

>1mld_A Malate dehydrogenase; oxidoreductase(NAD(A)-CHOH(D)); HET: CIT; 1.83A {Sus scrofa} SCOP: c.2.1.5 d.162.1.1 PDB: 2dfd_A*

Probab=94.93  E-value=0.16  Score=46.37  Aligned_cols=102  Identities=19%  Similarity=0.257  Sum_probs=58.4

Q ss_pred             CEEEEecc-CCChhhHHHHHhhcCCC--cEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEccccchhhcCCCcceeeh
Q 042119          132 KKVAFVGS-GPMPLTSIIMAKHHLTS--THFDNFDIDEAANDVARSIVASDAEFEGRMKFLTRDIMEVKEQLGEYDCIFL  208 (286)
Q Consensus       132 ~~VL~IG~-G~lp~tai~lA~~~~~g--~~V~~iDid~~ai~~Ar~~~~~~g~l~~~i~f~~~D~~~~~~~l~~fD~V~~  208 (286)
                      .||+.||+ |..|.+......  ..+  .+++.+|+++ +-..+..+.+...  ..++++..+. .+....+.+.|+||+
T Consensus         1 mKI~IiGa~G~VG~~la~~L~--~~~~~~ev~L~Di~~-~~~~a~dL~~~~~--~~~l~~~~~t-~d~~~a~~~aDvVvi   74 (314)
T 1mld_A            1 AKVAVLGASGGIGQPLSLLLK--NSPLVSRLTLYDIAH-TPGVAADLSHIET--RATVKGYLGP-EQLPDCLKGCDVVVI   74 (314)
T ss_dssp             CEEEEETTTSTTHHHHHHHHH--TCTTCSEEEEEESSS-HHHHHHHHTTSSS--SCEEEEEESG-GGHHHHHTTCSEEEE
T ss_pred             CEEEEECCCChHHHHHHHHHH--hCCCCcEEEEEeCCc-cHHHHHHHhccCc--CceEEEecCC-CCHHHHhCCCCEEEE
Confidence            48999998 999988665543  244  6899999998 4444444422211  1234444331 122233568899998


Q ss_pred             hhhc----cCChh--------HHHHHHHHHHhhccCCcEEEEee
Q 042119          209 AALV----GMSKE--------EKLTILGHIRKYMKDGGILLVRS  240 (286)
Q Consensus       209 aalv----g~~~~--------~k~~vl~~l~~~l~pgg~lv~r~  240 (286)
                      ++.+    |++..        --.++.+.+.+. .|++.+++-+
T Consensus        75 ~ag~~~~~g~~r~dl~~~n~~i~~~i~~~i~~~-~p~a~viv~s  117 (314)
T 1mld_A           75 PAGVPRKPGMTRDDLFNTNATIVATLTAACAQH-CPDAMICIIS  117 (314)
T ss_dssp             CCSCCCCTTCCGGGGHHHHHHHHHHHHHHHHHH-CTTSEEEECS
T ss_pred             CCCcCCCCCCcHHHHHHHHHHHHHHHHHHHHhh-CCCeEEEEEC
Confidence            8754    22211        122334444444 5889888854

>2raf_A Putative dinucleotide-binding oxidoreductase; NP_786167.1, NADP oxidoreductase coenzyme F420-dependent, structural genomics; HET: MSE NAP; 1.60A {Lactobacillus plantarum WCFS1}

Probab=94.92  E-value=0.039  Score=47.14  Aligned_cols=69  Identities=12%  Similarity=0.142  Sum_probs=45.1

Q ss_pred             CCCEEEEeccCCChhhHHH-HHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEccccchhhcCCCcceeeh
Q 042119          130 QPKKVAFVGSGPMPLTSII-MAKHHLTSTHFDNFDIDEAANDVARSIVASDAEFEGRMKFLTRDIMEVKEQLGEYDCIFL  208 (286)
Q Consensus       130 ~~~~VL~IG~G~lp~tai~-lA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~g~l~~~i~f~~~D~~~~~~~l~~fD~V~~  208 (286)
                      ..++|.+||+|.+|.+... |++   .|.+|+.+|++++                               ...+.|+|++
T Consensus        18 ~~~~I~iiG~G~mG~~la~~l~~---~g~~V~~~~~~~~-------------------------------~~~~aD~vi~   63 (209)
T 2raf_A           18 QGMEITIFGKGNMGQAIGHNFEI---AGHEVTYYGSKDQ-------------------------------ATTLGEIVIM   63 (209)
T ss_dssp             --CEEEEECCSHHHHHHHHHHHH---TTCEEEEECTTCC-------------------------------CSSCCSEEEE
T ss_pred             CCCEEEEECCCHHHHHHHHHHHH---CCCEEEEEcCCHH-------------------------------HhccCCEEEE
Confidence            3579999999988866433 333   6789999999876                               2245688776


Q ss_pred             hhhccCChhHHHHHHHHHHhhccCCcEEE
Q 042119          209 AALVGMSKEEKLTILGHIRKYMKDGGILL  237 (286)
Q Consensus       209 aalvg~~~~~k~~vl~~l~~~l~pgg~lv  237 (286)
                      +.-    ...-.++++.+.+.++ |.+++
T Consensus        64 av~----~~~~~~v~~~l~~~~~-~~~vi   87 (209)
T 2raf_A           64 AVP----YPALAALAKQYATQLK-GKIVV   87 (209)
T ss_dssp             CSC----HHHHHHHHHHTHHHHT-TSEEE
T ss_pred             cCC----cHHHHHHHHHHHHhcC-CCEEE
Confidence            532    2344567777777776 54443

>3i83_A 2-dehydropantoate 2-reductase; structural genomics, oxidoreductase, NADP, pantothenate BIOS PSI-2, protein structure initiative; 1.90A {Methylococcus capsulatus}

Probab=94.90  E-value=0.038  Score=50.20  Aligned_cols=99  Identities=16%  Similarity=0.228  Sum_probs=57.1

Q ss_pred             CEEEEeccCCChhhHHH-HHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCC-----CCCCeEEEEccccchhhcCC-Ccc
Q 042119          132 KKVAFVGSGPMPLTSII-MAKHHLTSTHFDNFDIDEAANDVARSIVASDAE-----FEGRMKFLTRDIMEVKEQLG-EYD  204 (286)
Q Consensus       132 ~~VL~IG~G~lp~tai~-lA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~g~-----l~~~i~f~~~D~~~~~~~l~-~fD  204 (286)
                      ++|+.||+|.+|..... |++   .|.+|+.+|.++.  +    .+++.|.     .....++....+.+-+.+.. .+|
T Consensus         3 mkI~IiGaGaiG~~~a~~L~~---~g~~V~~~~r~~~--~----~i~~~Gl~~~~~~~g~~~~~~~~~~~~~~~~~~~~D   73 (320)
T 3i83_A            3 LNILVIGTGAIGSFYGALLAK---TGHCVSVVSRSDY--E----TVKAKGIRIRSATLGDYTFRPAAVVRSAAELETKPD   73 (320)
T ss_dssp             CEEEEESCCHHHHHHHHHHHH---TTCEEEEECSTTH--H----HHHHHCEEEEETTTCCEEECCSCEESCGGGCSSCCS
T ss_pred             CEEEEECcCHHHHHHHHHHHh---CCCeEEEEeCChH--H----HHHhCCcEEeecCCCcEEEeeeeeECCHHHcCCCCC
Confidence            68999999988865333 344   6789999999872  2    2333341     01123321011111122333 799


Q ss_pred             eeehhhhccCChhHHHHHHHHHHhhccCCcEEEEeecCcc
Q 042119          205 CIFLAALVGMSKEEKLTILGHIRKYMKDGGILLVRSAKGA  244 (286)
Q Consensus       205 ~V~~aalvg~~~~~k~~vl~~l~~~l~pgg~lv~r~~~g~  244 (286)
                      +|+++.= ..   .-..+++.+.+.++|+..++.- .+|+
T Consensus        74 lVilavK-~~---~~~~~l~~l~~~l~~~t~Iv~~-~nGi  108 (320)
T 3i83_A           74 CTLLCIK-VV---EGADRVGLLRDAVAPDTGIVLI-SNGI  108 (320)
T ss_dssp             EEEECCC-CC---TTCCHHHHHTTSCCTTCEEEEE-CSSS
T ss_pred             EEEEecC-CC---ChHHHHHHHHhhcCCCCEEEEe-CCCC
Confidence            9998732 21   2225888999999998766543 3443

>2p4q_A 6-phosphogluconate dehydrogenase, decarboxylating; rossmann fold, oxidoreductase; HET: FLC; 2.37A {Saccharomyces cerevisiae}

Probab=94.88  E-value=0.034  Score=54.19  Aligned_cols=99  Identities=11%  Similarity=0.113  Sum_probs=64.4

Q ss_pred             CCCEEEEeccCCChhhH-HHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEccccchhhcCCCcceeeh
Q 042119          130 QPKKVAFVGSGPMPLTS-IIMAKHHLTSTHFDNFDIDEAANDVARSIVASDAEFEGRMKFLTRDIMEVKEQLGEYDCIFL  208 (286)
Q Consensus       130 ~~~~VL~IG~G~lp~ta-i~lA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~g~l~~~i~f~~~D~~~~~~~l~~fD~V~~  208 (286)
                      -..+|.+||.|.+|... ..|++   .|.+|+++|++++.++...+.  ..+  +..+.. +.|..++...+...|+||+
T Consensus         9 ~~~~IgvIGlG~MG~~lA~~La~---~G~~V~v~dr~~~~~~~l~~~--~~~--~~gi~~-~~s~~e~v~~l~~aDvVil   80 (497)
T 2p4q_A            9 MSADFGLIGLAVMGQNLILNAAD---HGFTVCAYNRTQSKVDHFLAN--EAK--GKSIIG-ATSIEDFISKLKRPRKVML   80 (497)
T ss_dssp             CCCSEEEECCSHHHHHHHHHHHH---TTCCEEEECSSSHHHHHHHHT--TTT--TSSEEC-CSSHHHHHHTSCSSCEEEE
T ss_pred             CCCCEEEEeeHHHHHHHHHHHHH---CCCEEEEEeCCHHHHHHHHcc--ccc--CCCeEE-eCCHHHHHhcCCCCCEEEE
Confidence            34689999999988753 33444   688999999999887655441  111  012332 3454454444455899997


Q ss_pred             hhhccCChhHHHHHHHHHHhhccCCcEEEEe
Q 042119          209 AALVGMSKEEKLTILGHIRKYMKDGGILLVR  239 (286)
Q Consensus       209 aalvg~~~~~k~~vl~~l~~~l~pgg~lv~r  239 (286)
                      +.--+   ..-.++++.+.+.++||.+|+--
T Consensus        81 ~Vp~~---~~v~~vl~~l~~~l~~g~iIId~  108 (497)
T 2p4q_A           81 LVKAG---APVDALINQIVPLLEKGDIIIDG  108 (497)
T ss_dssp             CCCSS---HHHHHHHHHHGGGCCTTCEEEEC
T ss_pred             EcCCh---HHHHHHHHHHHHhCCCCCEEEEC
Confidence            64211   23456888999999998877653

>3qiv_A Short-chain dehydrogenase or 3-oxoacyl-[acyl-CARR protein] reductase; structural genomics; 2.25A {Mycobacterium avium subsp}

Probab=94.87  E-value=0.26  Score=42.40  Aligned_cols=75  Identities=19%  Similarity=0.248  Sum_probs=54.7

Q ss_pred             CCCEEEEeccCCChhh---HHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEccccchhh--------
Q 042119          130 QPKKVAFVGSGPMPLT---SIIMAKHHLTSTHFDNFDIDEAANDVARSIVASDAEFEGRMKFLTRDIMEVKE--------  198 (286)
Q Consensus       130 ~~~~VL~IG~G~lp~t---ai~lA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~g~l~~~i~f~~~D~~~~~~--------  198 (286)
                      .+++||..|++ .|+.   +..|++   .|++|+.+|.+++..+...+.+...+   .++.++.+|+.+...        
T Consensus         8 ~~k~vlITGas-~giG~~~a~~l~~---~G~~V~~~~r~~~~~~~~~~~~~~~~---~~~~~~~~D~~~~~~~~~~~~~~   80 (253)
T 3qiv_A            8 ENKVGIVTGSG-GGIGQAYAEALAR---EGAAVVVADINAEAAEAVAKQIVADG---GTAISVAVDVSDPESAKAMADRT   80 (253)
T ss_dssp             TTCEEEEETTT-SHHHHHHHHHHHH---TTCEEEEEESCHHHHHHHHHHHHHTT---CEEEEEECCTTSHHHHHHHHHHH
T ss_pred             CCCEEEEECCC-ChHHHHHHHHHHH---CCCEEEEEcCCHHHHHHHHHHHHhcC---CcEEEEEccCCCHHHHHHHHHHH
Confidence            46889999985 4543   333444   79999999999999888777777666   579999999986421        


Q ss_pred             --cCCCcceeehhhh
Q 042119          199 --QLGEYDCIFLAAL  211 (286)
Q Consensus       199 --~l~~fD~V~~aal  211 (286)
                        .++..|+++..+.
T Consensus        81 ~~~~g~id~li~~Ag   95 (253)
T 3qiv_A           81 LAEFGGIDYLVNNAA   95 (253)
T ss_dssp             HHHHSCCCEEEECCC
T ss_pred             HHHcCCCCEEEECCC
Confidence              2247898886653

>3gvi_A Malate dehydrogenase; NAD, oxidoreductase, tricarboxylic acid cycle, structural genomics; HET: ADP; 2.25A {Brucella melitensis biovar ABORTUS2308} PDB: 3gvh_A*

Probab=94.87  E-value=0.051  Score=50.11  Aligned_cols=101  Identities=25%  Similarity=0.333  Sum_probs=60.0

Q ss_pred             CCEEEEeccCCChhhHHHHHhhcCCCc-EEEEEeCChHHHH-HHHHHHHh---cCCCCCCeEEEEccccchhhcCCCcce
Q 042119          131 PKKVAFVGSGPMPLTSIIMAKHHLTST-HFDNFDIDEAAND-VARSIVAS---DAEFEGRMKFLTRDIMEVKEQLGEYDC  205 (286)
Q Consensus       131 ~~~VL~IG~G~lp~tai~lA~~~~~g~-~V~~iDid~~ai~-~Ar~~~~~---~g~l~~~i~f~~~D~~~~~~~l~~fD~  205 (286)
                      ..+|..||+|.+|.+...+...  .|. +|+.+|++++.++ .+.++.+.   .+ ...++.. +.|.    .++.+.|+
T Consensus         7 ~~kI~viGaG~vG~~~a~~l~~--~~~~~v~L~Di~~~~~~g~~~dl~~~~~~~~-~~~~v~~-t~d~----~a~~~aDi   78 (324)
T 3gvi_A            7 RNKIALIGSGMIGGTLAHLAGL--KELGDVVLFDIAEGTPQGKGLDIAESSPVDG-FDAKFTG-ANDY----AAIEGADV   78 (324)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHH--TTCCEEEEECSSSSHHHHHHHHHHHHHHHHT-CCCCEEE-ESSG----GGGTTCSE
T ss_pred             CCEEEEECCCHHHHHHHHHHHh--CCCCeEEEEeCCchhHHHHHHHHhchhhhcC-CCCEEEE-eCCH----HHHCCCCE
Confidence            4699999999988875554332  344 9999999998654 34444332   22 1233332 3453    35568999


Q ss_pred             eehhhhc----cCCh--------hHHHHHHHHHHhhccCCcEEEEee
Q 042119          206 IFLAALV----GMSK--------EEKLTILGHIRKYMKDGGILLVRS  240 (286)
Q Consensus       206 V~~aalv----g~~~--------~~k~~vl~~l~~~l~pgg~lv~r~  240 (286)
                      |++++-+    ||+.        +.-.++.+.+.+. .|++.+++-+
T Consensus        79 VIiaag~p~k~G~~R~dl~~~N~~i~~~i~~~i~~~-~p~a~iivvt  124 (324)
T 3gvi_A           79 VIVTAGVPRKPGMSRDDLLGINLKVMEQVGAGIKKY-APEAFVICIT  124 (324)
T ss_dssp             EEECCSCCCC-----CHHHHHHHHHHHHHHHHHHHH-CTTCEEEECC
T ss_pred             EEEccCcCCCCCCCHHHHHHhhHHHHHHHHHHHHHH-CCCeEEEecC
Confidence            9987643    2221        1123444555555 5899888754

>3c7a_A Octopine dehydrogenase; L) stereospecific opine dehydrogenas, oxidorecutase, oxidoreductase; HET: NAD; 2.10A {Pecten maximus} PDB: 3c7c_B* 3c7d_B* 3iqd_B*

Probab=94.86  E-value=0.028  Score=52.64  Aligned_cols=95  Identities=18%  Similarity=0.163  Sum_probs=58.7

Q ss_pred             CEEEEeccCCChhhHHH-HHhhcCCCcEEEEEe---CChHHHHHHHHHHHhcCC------CCC-------CeEEEEcccc
Q 042119          132 KKVAFVGSGPMPLTSII-MAKHHLTSTHFDNFD---IDEAANDVARSIVASDAE------FEG-------RMKFLTRDIM  194 (286)
Q Consensus       132 ~~VL~IG~G~lp~tai~-lA~~~~~g~~V~~iD---id~~ai~~Ar~~~~~~g~------l~~-------~i~f~~~D~~  194 (286)
                      ++|++||+|.+|..... |++  ..|.+|+.+|   .+++.++.+.   +..|.      ...       ++...+.|..
T Consensus         3 mkI~ViGaG~~G~~~a~~La~--~~G~~V~~~~~~~r~~~~~~~~~---~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~   77 (404)
T 3c7a_A            3 VKVCVCGGGNGAHTLSGLAAS--RDGVEVRVLTLFADEAERWTKAL---GADELTVIVNEKDGTQTEVKSRPKVITKDPE   77 (404)
T ss_dssp             EEEEEECCSHHHHHHHHHHTT--STTEEEEEECCSTTHHHHHHHHH---TTSCEEEEEECSSSCEEEEEECCSEEESCHH
T ss_pred             ceEEEECCCHHHHHHHHHHHh--CCCCEEEEEeCCCCcHHHHHHHH---hhccceeeeecCCCccceeeccceEEeCCHH
Confidence            58999999988765433 222  1488999999   7777665432   22220      000       1111222322


Q ss_pred             chhhcCCCcceeehhhhccCChhHHHHHHHHHHhhccCCcEEEE
Q 042119          195 EVKEQLGEYDCIFLAALVGMSKEEKLTILGHIRKYMKDGGILLV  238 (286)
Q Consensus       195 ~~~~~l~~fD~V~~aalvg~~~~~k~~vl~~l~~~l~pgg~lv~  238 (286)
                         .....+|+|+++.-    ......+++.+.+.++|+.+|+.
T Consensus        78 ---~a~~~aD~Vilav~----~~~~~~v~~~l~~~l~~~~ivv~  114 (404)
T 3c7a_A           78 ---IAISGADVVILTVP----AFAHEGYFQAMAPYVQDSALIVG  114 (404)
T ss_dssp             ---HHHTTCSEEEECSC----GGGHHHHHHHHTTTCCTTCEEEE
T ss_pred             ---HHhCCCCEEEEeCc----hHHHHHHHHHHHhhCCCCcEEEE
Confidence               22357999998742    24567899999999999877665

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	286
d2o57a1	282	Putative sarcosine dimethylglycine methyltransfera	99.73
d1vl5a_	231	Hypothetical protein BH2331 {Bacillus halodurans [	99.73
d1ve3a1	226	Hypothetical protein PH0226 {Archaeon Pyrococcus h	99.72
d1wzna1	251	Hypothetical methyltransferase PH1305 {Archaeon Py	99.72
d1xxla_	234	Hypothetical protein YcgJ {Bacillus subtilis [TaxI	99.72
d1nkva_	245	Hypothetical Protein YjhP {Escherichia coli [TaxId	99.72
d1l3ia_	186	Precorrin-6Y methyltransferase (CbiT) {Archaeon Me	99.7
d2i6ga1	198	Putative methyltransferase TehB {Salmonella typhim	99.7
d1im8a_	225	Hypothetical protein HI0319 (YecO) {Haemophilus in	99.66
d1yb2a1	250	Hypothetical protein Ta0852 {Thermoplasma acidophi	99.64
d1y8ca_	246	Putative methyltransferase CAC2371 {Clostridium ac	99.64
d1pjza_	201	Thiopurine S-methyltransferase {Pseudomonas syring	99.64
d2ex4a1	222	Adrenal gland protein AD-003 (C9orf32) {Human (Hom	99.61
d2gh1a1	281	Methyltransferase BC2162 {Bacillus cereus [TaxId:	99.6
d2fk8a1	280	Methoxy mycolic acid synthase 4, Mma4 {Mycobacteri	99.59
d2bzga1	229	Thiopurine S-methyltransferase {Human (Homo sapien	99.59
d1kpga_	285	CmaA1 {Mycobacterium tuberculosis [TaxId: 1773]}	99.58
d2avda1	219	COMT domain-containing protein 1, COMTD1 {Human (H	99.58
d1tw3a2	253	Carminomycin 4-O-methyltransferase {Streptomyces p	99.57
d2avna1	246	Hypothetical methyltransferase TM1389 {Thermotoga	99.57
d1susa1	227	Caffeoyl-CoA O-methyltransferase {Alfalfa (Medicag	99.57
d1dl5a1	213	Protein-L-isoaspartyl O-methyltransferase {Thermot	99.56
d1i9ga_	264	Probable methyltransferase Rv2118c {Mycobacterium	99.56
d2nxca1	254	PrmA-like protein TTHA0656 (TT0836) {Thermus therm	99.55
d1p91a_	268	rRNA methyltransferase RlmA {Escherichia coli [Tax	99.55
d1ri5a_	252	mRNA cap (Guanine N-7) methyltransferase {Fungus (	99.54
d1zx0a1	229	Guanidinoacetate methyltransferase {Human (Homo sa	99.53
d1kpia_	291	CmaA2 {Mycobacterium tuberculosis [TaxId: 1773]}	99.53
d1dusa_	194	Hypothetical protein MJ0882 {Archaeon Methanococcu	99.53
d2cl5a1	214	Catechol O-methyltransferase, COMT {Rat (Rattus no	99.52
d1nt2a_	209	Fibrillarin homologue {Archaeon Archaeoglobus fulg	99.52
d1o54a_	266	Hypothetical protein TM0748 {Thermotoga maritima [	99.51
d1xtpa_	254	Hypothetical protein Lmaj004091aaa (LmjF30.0810) {	99.49
d1qzza2	256	Aclacinomycin-10-hydroxylase RdmB {Streptomyces pu	99.49
d1i1na_	224	Protein-L-isoaspartyl O-methyltransferase {Human (	99.49
d1g8aa_	227	Fibrillarin homologue {Archaeon Pyrococcus horikos	99.48
d1g8sa_	230	Fibrillarin homologue {Archaeon Methanococcus jann	99.48
d2a14a1	257	Indolethylamine N-methyltransferase, INMT {Human (	99.47
d2fcaa1	204	tRNA (guanine-N(7)-)-methyltransferase TrmB {Bacil	99.46
d2p7ia1	225	Hypothetical protein ECA1738 {Erwinia carotovora [	99.45
d2b25a1	324	Hypothetical protein FLJ20628 {Human (Homo sapiens	99.44
d2g72a1	263	Phenylethanolamine N-methyltransferase, PNMTase {H	99.41
d1vlma_	208	Possible histamine N-methyltransferase TM1293 {The	99.38
d1jg1a_	215	Protein-L-isoaspartyl O-methyltransferase {Archaeo	99.35
d1xvaa_	292	Glycine N-methyltransferase {Rat (Rattus norvegicu	99.34
d1vbfa_	224	Protein-L-isoaspartyl O-methyltransferase {Sulfolo	99.34
d1yzha1	204	tRNA (guanine-N(7)-)-methyltransferase TrmB {Strep	99.33
d1nw3a_	328	Catalytic, N-terminal domain of histone methyltran	99.32
d1g6q1_	328	Arginine methyltransferase, HMT1 {Baker's yeast (S	99.31
d1oria_	316	Protein arginine N-methyltransferase 1, PRMT1 {Rat	99.28
d2as0a2	324	Hypothetical protein PH1915, middle and C-terminal	99.26
d1wxxa2	318	Hypothetical protein TTHA1280, middle and C-termin	99.26
d2fyta1	311	Protein arginine N-methyltransferase 3, PRMT3 {Hum	99.23
d2esra1	152	Putative methyltransferase SPy1538 {Streptococcus	99.23
d2frna1	260	Hypothetical protein PH0793 {Pyrococcus horikoshii	99.2
d2b3ta1	274	N5-glutamine methyltransferase, HemK {Escherichia	99.19
d1r18a_	223	Protein-L-isoaspartyl O-methyltransferase {Fruit f	99.18
d1u2za_	406	Catalytic, N-terminal domain of histone methyltran	99.14
d1m6ya2	192	TM0872, methyltransferase domain {Thermotoga marit	99.13
d1mjfa_	276	Putative spermidine synthetase PF0127 (SpeE) {Arch	99.12
d1jqea_	280	Histamine methyltransferase {Human (Homo sapiens)	99.09
d2b78a2	317	Hypothetical protein SMu776, middle and C-terminal	99.08
d2igta1	309	Putative methyltransferase Atu0340 {Agrobacterium	99.07
d1uira_	312	Spermidine synthase {Thermus thermophilus [TaxId:	99.06
d1inla_	295	Spermidine synthase {Thermotoga maritima [TaxId: 2	99.04
d1ws6a1	171	Methyltransferase TTHA0928 {Thermus thermophilus [	99.02
d1wy7a1	201	Hypothetical protein PH1948 {Archaeon Pyrococcus h	99.01
d2o07a1	285	Spermidine synthase {Human (Homo sapiens) [TaxId:	98.99
d1iy9a_	274	Spermidine synthase {Bacillus subtilis [TaxId: 142	98.94
d1xj5a_	290	Spermidine synthase {Thale cress (Arabidopsis thal	98.93
d2fhpa1	182	Putative methylase EF2452 {Enterococcus faecalis [	98.92
d2b2ca1	312	Spermidine synthase {Caenorhabditis elegans [TaxId	98.9
d2fpoa1	183	Methylase YhhF {Escherichia coli [TaxId: 562]}	98.84
d1ne2a_	197	Hypothetical protein Ta1320 {Archaeon Thermoplasma	98.83
d1nv8a_	271	N5-glutamine methyltransferase, HemK {Thermotoga m	98.81
d1jsxa_	207	Glucose-inhibited division protein B (GidB) {Esche	98.79
d1fp1d2	244	Chalcone O-methyltransferase {Alfalfa (Medicago sa	98.78
d2h00a1	250	Methyltransferase 10 domain containing protein MET	98.72
d1fp2a2	244	Isoflavone O-methyltransferase {Alfalfa (Medicago	98.71
d1e3ja2	170	Ketose reductase (sorbitol dehydrogenase) {Silverl	98.65
d1pl8a2	171	Ketose reductase (sorbitol dehydrogenase) {Human (	98.59
d1kyza2	243	Caffeic acid/5-hydroxyferulic acid 3/5-O-methyltra	98.57
d1pjca1	168	L-alanine dehydrogenase {Phormidium lapideum [TaxI	98.56
d1jqba2	174	Bacterial secondary alcohol dehydrogenase {Clostri	98.53
d1af7a2	193	Chemotaxis receptor methyltransferase CheR, C-term	98.53
d1piwa2	168	Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeas	98.49
d1xdza_	239	Glucose-inhibited division protein B (GidB) {Bacil	98.49
d1llua2	166	Alcohol dehydrogenase {Pseudomonas aeruginosa [Tax	98.48
d1uufa2	168	Hypothetical protein YahK {Escherichia coli [TaxId	98.44
d2ifta1	183	Putative methylase HI0767 {Haemophilus influenzae	98.4
d1rjwa2	168	Alcohol dehydrogenase {Bacillus stearothermophilus	98.4
d1kola2	195	Formaldehyde dehydrogenase {Pseudomonas putida [Ta	98.4
d1vj0a2	182	Hypothetical protein TM0436 {Thermotoga maritima [	98.39
d1ixka_	313	Hypothetical methyltransferase PH1374 {Archaeon Py	98.39
d1uwva2	358	rRNA (Uracil-5-)-methyltransferase RumA, catalytic	98.38
d1wg8a2	182	TM0872, methyltransferase domain {Thermus thermoph	98.34
d1f8fa2	174	Benzyl alcohol dehydrogenase {Acinetobacter calcoa	98.28
d2bm8a1	232	Cephalosporin hydroxylase CmcI {Streptomyces clavu	98.26
d2b9ea1	293	NOL1R {Human (Homo sapiens) [TaxId: 9606]}	98.24
d1l7da1	183	Nicotinamide nucleotide transhydrogenase dI compon	98.24
d1sqga2	284	Ribosomal RNA small subunit methyltransferase B, R	98.21
d1qama_	235	rRNA adenine dimethylase {Bacillus subtilis, Ermc'	98.21
d1e3ia2	174	Alcohol dehydrogenase {Mouse (Mus musculus), class	98.2
d1p0fa2	174	Alcohol dehydrogenase {Frog (Rana perezi) [TaxId:	98.16
d1iz0a2	171	Quinone oxidoreductase {Thermus thermophilus [TaxI	98.16
d1yb5a2	174	Quinone oxidoreductase {Human (Homo sapiens) [TaxI	98.11
d2dula1	375	N(2),N(2)-dimethylguanosine tRNA methyltransferase	98.09
d1h2ba2	172	Alcohol dehydrogenase {Archaeon Aeropyrum pernix [	98.08
d1d1ta2	176	Alcohol dehydrogenase {Human (Homo sapiens), diffe	98.08
d2f8la1	328	Hypothetical protein Lmo1582 {Listeria monocytogen	98.07
d1jvba2	170	Alcohol dehydrogenase {Archaeon Sulfolobus solfata	98.04
d1f0ya2	192	Short chain L-3-hydroxyacyl CoA dehydrogenase {Hum	98.02
d1zq9a1	278	Probable dimethyladenosine transferase {Human (Hom	98.0
d1yuba_	245	rRNA adenine dimethylase {Streptococcus pneumoniae	97.95
d2f1ka2	165	Prephenate dehydrogenase TyrA {Synechocystis sp. p	97.88
d2g5ca2	171	Prephenate dehydrogenase TyrA {Aquifex aeolicus [T	97.85
d1qyra_	252	High level kasugamycin resistance protein KsgA {Es	97.68
d2oyra1	250	Hypothetical protein YhiQ {Shigella flexneri [TaxI	97.63
d2fzwa2	176	Alcohol dehydrogenase {Human (Homo sapiens), diffe	97.62
d1bg6a2	184	N-(1-D-carboxylethyl)-L-norvaline dehydrogenase {A	97.6
d1qora2	179	Quinone oxidoreductase {Escherichia coli [TaxId: 5	97.58
d1pqwa_	183	Putative enoyl reductase domain of polyketide synt	97.56
d1cdoa2	175	Alcohol dehydrogenase {Cod (Gadus callarias) [TaxI	97.55
d1wdka3	186	Fatty oxidation complex alpha subunit, middle doma	97.48
d2jhfa2	176	Alcohol dehydrogenase {Horse (Equus caballus) [Tax	97.46
d2ih2a1	223	DNA methylase TaqI, N-terminal domain {Thermus aqu	97.45
d1ej0a_	180	RNA methyltransferase FtsJ {Escherichia coli [TaxI	97.44
d1gu7a2	189	2,4-dienoyl-CoA reductase {Yeast (Candida tropical	97.28
d1v3va2	182	Leukotriene b4 12-hydroxydehydrogenase/prostagland	97.25
d1lssa_	132	Ktn Mja218 {Archaeon Methanococcus jannaschii [Tax	97.2
d1ps9a3	179	2,4-dienoyl-CoA reductase, middle domain {Escheric	96.92
d1mv8a2	202	GDP-mannose 6-dehydrogenase {Pseudomonas aeruginos	96.89
d1vj1a2	187	Putative zinc-binding alcohol dehydrogenase {Mouse	96.77
d1xa0a2	176	B. subtilis YhfP homologue {Bacillus stearothermop	96.74
d1ldna1	148	Lactate dehydrogenase {Bacillus stearothermophilus	96.71
d1yqga2	152	Pyrroline-5-carboxylate reductase ProC {Neisseria	96.64
d2hmva1	134	Ktn bsu222 {Bacillus subtilis [TaxId: 1423]}	96.61
d2okca1	425	Type I restriction enzyme StySJI M protein {Bacter	96.6
d1a5za1	140	Lactate dehydrogenase {Thermotoga maritima [TaxId:	96.54
d1obba1	171	Alpha-glucosidase AglA {Thermotoga maritima [TaxId	96.52
d1ez4a1	146	Lactate dehydrogenase {Lactobacillus pentosus [Tax	96.44
d1hyha1	146	L-2-hydroxyisocapronate dehydrogenase, L-HICDH {La	96.35
d1id1a_	153	Rck domain from putative potassium channel Kch {Es	96.32
d1llda1	143	Lactate dehydrogenase {Bifidobacterium longum, str	96.31
d1ks9a2	167	Ketopantoate reductase PanE {Escherichia coli [Tax	96.27
d1tt7a2	167	Hypothetical protein YhfP {Bacillus subtilis [TaxI	96.16
d1pjqa1	113	Siroheme synthase CysG, domain 1 {Salmonella typhi	96.04
d1i4wa_	322	Transcription factor sc-mtTFB {Baker's yeast (Sacc	95.99
d1p3da1	96	UDP-N-acetylmuramate-alanine ligase MurC {Haemophi	95.96
d1u8xx1	167	Maltose-6'-phosphate glucosidase GlvA {Bacillus su	95.91
d1j6ua1	89	UDP-N-acetylmuramate-alanine ligase MurC {Thermoto	95.89
d1o6za1	142	Malate dehydrogenase {Archaeon Haloarcula marismor	95.71
d1vpda2	161	Hydroxyisobutyrate dehydrogenase {Salmonella typhi	95.66
d2pgda2	176	6-phosphogluconate dehydrogenase {Sheep (Ovis orie	95.6
d2p41a1	257	An RNA cap (nucleoside-2'-O-)-methyltransferase do	95.56
d2ahra2	152	Pyrroline-5-carboxylate reductase ProC {Streptococ	95.44
d1o89a2	177	Hypothetical protein YhdH {Escherichia coli [TaxId	95.43
d2ldxa1	159	Lactate dehydrogenase {Mouse (Mus musculus) [TaxId	95.4
d1wmaa1	275	Carbonyl reductase/20beta-hydroxysteroid dehydroge	95.35
d1up7a1	162	6-phospho-beta-glucosidase {Thermotoga maritima [T	95.23
d2fy8a1	129	Potassium channel-related protein MthK {Archaeon M	95.21
d1luaa1	191	Methylene-tetrahydromethanopterin dehydrogenase {M	95.18
d1onfa2	117	Glutathione reductase {Plasmodium falciparum [TaxI	95.08
d1s6ya1	169	6-phospho-beta-glucosidase {Bacillus stearothermop	95.02
d1gesa2	116	Glutathione reductase {Escherichia coli [TaxId: 56	94.95
d2iida1	370	L-aminoacid oxidase {Malayan pit viper (Calloselas	94.92
d1hyea1	145	MJ0490, lactate/malate dehydrogenase {Archaeon Met	94.8
d1y6ja1	142	Lactate dehydrogenase {Clostridium thermocellum [T	94.76
d1v59a2	122	Dihydrolipoamide dehydrogenase {Baker's yeast (Sac	94.74
d1t2da1	150	Lactate dehydrogenase {Malaria parasite (Plasmodiu	94.7
d2uyoa1	297	Putative methyltransferase ML2640 {Mycobacterium l	94.68
d1mlda1	144	Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 982	94.66
d1ydwa1	184	Probable oxidoreductase At4g09670 {Thale cress (Ar	94.64
d3cuma2	162	Hydroxyisobutyrate dehydrogenase {Pseudomonas aeru	94.6
d1pgja2	178	6-phosphogluconate dehydrogenase {Trypanosoma bruc	94.57
d1xg5a_	257	Putative dehydrogenase ARPG836 (MGC4172) {Human (H	94.5
d1guza1	142	Malate dehydrogenase {Chlorobium vibrioforme [TaxI	94.49
d1ebda2	117	Dihydrolipoamide dehydrogenase {Bacillus stearothe	94.46
d1dlja2	196	UDP-glucose dehydrogenase (UDPGDH) {Streptococcus	94.43
d1i0za1	160	Lactate dehydrogenase {Human (Homo sapiens), heart	94.3
d2ar0a1	524	M.EcoKI {Escherichia coli [TaxId: 562]}	94.14
d1pzga1	154	Lactate dehydrogenase {Toxoplasma gondii [TaxId: 5	94.09
d1kyqa1	150	Bifunctional dehydrogenase/ferrochelatase Met8p, N	94.05
d3grsa2	125	Glutathione reductase {Human (Homo sapiens) [TaxId	93.98
d1uxja1	142	Malate dehydrogenase {Chloroflexus aurantiacus [Ta	93.94
d1nvmb1	157	Acetaldehyde dehydrogenase (acylating) {Pseudomona	93.78
d1o9ga_	249	rRNA methyltransferase AviRa {Streptomyces viridoc	93.76
d2pv7a2	152	Prephenate dehydrogenase TyrA {Haemophilus influen	93.72
d1npya1	167	Shikimate 5-dehydrogenase-like protein HI0607 {Hae	93.69
d1gtea4	196	Dihydropyrimidine dehydrogenase, domain 2 {Pig (Su	93.51
d1vjta1	193	Putative alpha-glucosidase TM0752 {Thermotoga mari	93.47
d1gpja2	159	Glutamyl tRNA-reductase middle domain {Archaeon Me	93.43
d1zema1	260	Xylitol dehydrogenase {Gluconobacter oxydans [TaxI	93.4
d1seza1	373	Protoporphyrinogen oxidase {Tobacco (Nicotiana tab	93.39
d1xhla_	274	Hypothetical protein F25D1.5 {Caenorhabditis elega	93.16
d3lada2	119	Dihydrolipoamide dehydrogenase {Azotobacter vinela	93.04
d1aoga2	117	Trypanothione reductase {Trypanosoma cruzi [TaxId:	93.03
d2cmda1	145	Malate dehydrogenase {Escherichia coli [TaxId: 562	93.02
d1fcda1	186	Flavocytochrome c sulfide dehydrogenase, FCSD, fla	92.92
d1iy8a_	258	Levodione reductase {Corynebacterium aquaticum [Ta	92.7
d1lvla2	115	Dihydrolipoamide dehydrogenase {Pseudomonas putida	92.64
d1vi2a1	182	Putative shikimate dehydrogenase YdiB {Escherichia	92.63
d1o8ca2	77	Hypothetical protein YhdH {Escherichia coli [TaxId	92.54
d1d7ya2	121	NADH-dependent ferredoxin reductase, BphA4 {Pseudo	92.46
d1nyta1	170	Shikimate 5-dehydrogenase AroE {Escherichia coli [	92.36
d1vl8a_	251	Gluconate 5-dehydrogenase {Thermotoga maritima [Ta	92.34
d1h6va2	122	Mammalian thioredoxin reductase {Rat (Rattus norve	92.2
d1n1ea2	189	Glycerol-3- phosphate dehydrogenase {Trypanosome (	92.16
d2c07a1	251	beta-keto acyl carrier protein reductase {Malaria	92.13
d1yb1a_	244	17-beta-hydroxysteroid dehydrogenase type XI {Huma	92.03
d1g0oa_	272	1,3,8-trihydroxynaphtalene reductase (THNR, naphto	92.03
d1ojua1	142	Malate dehydrogenase {Archaeon Archaeoglobus fulgi	91.84
d1djqa3	233	Trimethylamine dehydrogenase, middle domain {Methy	91.71
d1fmca_	255	7-alpha-hydroxysteroid dehydrogenase {Escherichia	91.67
d2voua1	265	Dihydroxypyridine hydroxylase DhpH {Arthrobacter n	91.66
d1nhpa2	123	NADH peroxidase {Enterococcus faecalis [TaxId: 135	91.66
d1xeaa1	167	Putative oxidoreductase VCA1048 {Vibrio cholerae [	91.65
d1h6da1	221	Glucose-fructose oxidoreductase, N-terminal domain	91.65
d1feca2	117	Trypanothione reductase {Crithidia fasciculata [Ta	91.53
d1cjca2	230	Adrenodoxin reductase of mitochondrial p450 system	91.44
d1mo9a2	121	NADH-dependent 2-ketopropyl coenzyme M oxidoreduct	91.41
d1e5qa1	182	Saccharopine reductase {Rice blast fungus (Magnapo	91.36
d1lqta2	239	Ferredoxin:NADP reductase FprA {Mycobacterium tube	91.27
d1dxla2	123	Dihydrolipoamide dehydrogenase {Garden pea (Pisum	91.24
d1xkqa_	272	Hypothetical protein R05D8.7 {Caenorhabditis elega	91.21
d2jfga1	93	UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase	91.14
d1q1ra2	133	Putidaredoxin reductase {Pseudomonas putida [TaxId	91.1
d1ja9a_	259	1,3,6,8-tetrahydroxynaphthalene reductase {Rice bl	90.98
d1gega_	255	meso-2,3-butanediol dehydrogenase {Klebsiella pneu	90.87
d1c0pa1	268	D-aminoacid oxidase, N-terminal domain {Rhodotorul	90.73
d2rhca1	257	beta-keto acyl carrier protein reductase {Streptom	90.4
d1xhca2	122	NADH oxidase /nitrite reductase {Pyrococcus furios	90.35
d1xq1a_	259	Tropinone reductase {Thale cress (Arabidopsis thal	89.9
d1spxa_	264	Glucose dehydrogenase (5l265) {Nematode (Caenorhab	89.71
d1txga2	180	Glycerol-3- phosphate dehydrogenase {Archaeoglobus	89.47
d2ae2a_	259	Tropinone reductase {Jimsonweed (Datura stramonium	89.34
d1p77a1	171	Shikimate 5-dehydrogenase AroE {Haemophilus influe	89.32
d2ivda1	347	Protoporphyrinogen oxidase {Myxococcus xanthus [Ta	88.87
d1qp8a1	181	Putative formate dehydrogenase {Archaeon Pyrobacul	88.44
d7mdha1	175	Malate dehydrogenase {Sorghum (Sorghum vulgare), c	88.4
d2gdza1	254	15-hydroxyprostaglandin dehydrogenase, PGDH {Human	88.36
d1ae1a_	258	Tropinone reductase {Jimsonweed (Datura stramonium	88.18
d1trba1	190	Thioredoxin reductase {Escherichia coli [TaxId: 56	88.1
d2bgka1	268	Rhizome secoisolariciresinol dehydrogenase {Mayapp	87.95
d1b5qa1	347	Polyamine oxidase {Maize (Zea mays) [TaxId: 4577]}	87.9
d1q7ba_	243	beta-keto acyl carrier protein reductase {Escheric	87.88
d1ojta2	125	Dihydrolipoamide dehydrogenase {Neisseria meningit	87.81
d1w6ua_	294	2,4-dienoyl-CoA reductase, mitochondrial (DECR) {H	87.79
d1ulua_	256	Enoyl-ACP reductase {Thermus thermophilus [TaxId:	87.37
d2a4ka1	241	beta-keto acyl carrier protein reductase {Thermus	87.32
d1zk4a1	251	R-specific alcohol dehydrogenase {Lactobacillus br	87.21
d1j4aa1	197	D-lactate dehydrogenase {Lactobacillus helveticus	87.16
d1m6ia2	137	Apoptosis-inducing factor (AIF) {Human (Homo sapie	87.09
d3c96a1	288	Monooxygenase PhzS {Pseudomonas aeruginosa [TaxId:	86.8
d1gesa1	217	Glutathione reductase {Escherichia coli [TaxId: 56	86.59
d1y7ta1	154	Malate dehydrogenase {Thermus thermophilus [TaxId:	86.57
d1mx3a1	193	Transcription corepressor CtbP {Human (Homo sapien	86.56
d2pd4a1	274	Enoyl-ACP reductase {Helicobacter pylori [TaxId: 2	86.37
d2bi7a1	314	UDP-galactopyranose mutase, N-terminal domain {Kle	86.26
d1g60a_	256	Methyltransferase mboII {Moraxella bovis [TaxId: 4	85.99
d1h5qa_	260	Mannitol dehydrogenase {Mushroom (Agaricus bisporu	85.81
d1nffa_	244	Putative oxidoreductase Rv2002 {Mycobacterium tube	85.75
d1h6va1	235	Mammalian thioredoxin reductase {Rat (Rattus norve	85.58
d2dw4a2	449	Lysine-specific histone demethylase 1, LSD1 {Human	85.54
d1x1ta1	260	D(-)-3-hydroxybutyrate dehydrogenase {Pseudomonas	85.47
d1k0ia1	292	p-Hydroxybenzoate hydroxylase, PHBH {Pseudomonas a	85.36
d1li4a1	163	S-adenosylhomocystein hydrolase {Human (Homo sapie	85.32
d1ebda1	223	Dihydrolipoamide dehydrogenase {Bacillus stearothe	85.19
d1hdoa_	205	Biliverdin IX beta reductase {Human (Homo sapiens)	85.18
d3lada1	229	Dihydrolipoamide dehydrogenase {Azotobacter vinela	85.09
d1zh8a1	181	Hypothetical protein TM0312 {Thermotoga maritima [	84.95
d1ygya1	184	Phosphoglycerate dehydrogenase {Mycobacterium tube	84.94
d1pvva2	163	Ornithine transcarbamoylase {Archaeon Pyrococcus f	84.92
d2i76a2	153	Hypothetical protein TM1727 {Thermotoga maritima [	84.84
d2b0ja2	242	5,10-methenyltetrahydromethanopterin hydrogenase,	84.56
d1hdca_	254	3-alpha,20-beta-hydroxysteroid dehydrogenase {Stre	84.49
d1dxla1	221	Dihydrolipoamide dehydrogenase {Garden pea (Pisum	84.48
d1u0sy_	118	CheY protein {Thermotoga maritima [TaxId: 2336]}	84.28
d1qsga_	258	Enoyl-ACP reductase {Escherichia coli [TaxId: 562]	84.16
d1yova1	529	Amyloid beta precursor protein-binding protein 1,	84.08
d1yovb1	426	UBA3 {Human (Homo sapiens) [TaxId: 9606]}	83.97
d1geea_	261	Glucose dehydrogenase {Bacillus megaterium [TaxId:	83.77
d1ojta1	229	Dihydrolipoamide dehydrogenase {Neisseria meningit	83.76
d1oaaa_	259	Sepiapterin reductase {Mouse (Mus musculus) [TaxId	83.73
d1a9xa4	121	Carbamoyl phosphate synthetase (CPS), large subuni	83.71
d1a9xa3	127	Carbamoyl phosphate synthetase (CPS), large subuni	83.69
d1xdia1	233	Dihydrolipoamide dehydrogenase {Mycobacterium tube	83.65
d1dxya1	199	D-2-hydroxyisocaproate dehydrogenase {Lactobacillu	83.53
d1pr9a_	244	Carbonyl reductase {Human (Homo sapiens) [TaxId: 9	83.43
d1rp0a1	278	Thiazole biosynthetic enzyme Thi4 {Thale cress(Ara	83.41
d3grsa1	221	Glutathione reductase {Human (Homo sapiens) [TaxId	83.41
d2gv8a1	335	Flavin-dependent monoxygenase SPBP16F5.08c {Schizo	83.32
d2cvza2	156	Hydroxyisobutyrate dehydrogenase {Thermus thermoph	82.66
d1fl2a1	184	Alkyl hydroperoxide reductase subunit F (AhpF), C-	82.42
d1nhpa1	198	NADH peroxidase {Enterococcus faecalis [TaxId: 135	82.37
d1v59a1	233	Dihydrolipoamide dehydrogenase {Baker's yeast (Sac	81.87
d1booa_	320	m.PvuII N4 cytosine-specific DNA methyltransferase	81.78
d1cyda_	242	Carbonyl reductase {Mouse (Mus musculus) [TaxId: 1	81.65
d1vlva2	161	Ornithine transcarbamoylase {Thermotoga maritima [	81.52
d1jaya_	212	Coenzyme F420H2:NADP+ oxidoreductase (FNO) {Archae	81.47
d5mdha1	154	Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 982	81.36
d2naca1	188	Formate dehydrogenase {Pseudomonas sp., strain 101	81.28
d1x7da_	340	Ornithine cyclodeaminase {Pseudomonas putida [TaxI	81.21
d2d1ya1	248	Hypothetical protein TTHA0369 {Thermus thermophilu	81.14
d1d5ta1	336	Guanine nucleotide dissociation inhibitor, GDI {Co	81.04
d1yxma1	297	Peroxisomal trans 2-enoyl CoA reductase {Human (Ho	81.02
d1y1pa1	342	Aldehyde reductase II {Sporobolomyces salmonicolor	80.77
d1lvla1	220	Dihydrolipoamide dehydrogenase {Pseudomonas putida	80.54
d2bcgg1	297	Guanine nucleotide dissociation inhibitor, GDI {Ba	80.09
d1dcfa_	134	Receiver domain of the ethylene receptor {Thale cr	80.09
d1eg2a_	279	m.RsrI N6 adenosine-specific DNA methyltransferase	80.06

>d2o57a1 c.66.1.18 (A:16-297) Putative sarcosine dimethylglycine methyltransferase {Red algae (Galdieria sulphuraria) [TaxId: 130081]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Mycolic acid cyclopropane synthase
domain: Putative sarcosine dimethylglycine methyltransferase
species: Red algae (Galdieria sulphuraria) [TaxId: 130081]

Probab=99.73  E-value=1.3e-17  Score=149.03  Aligned_cols=110  Identities=13%  Similarity=0.220  Sum_probs=93.7

Q ss_pred             cCCCCCCEEEEeccCCChhhHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEccccchhhcCCCcce
Q 042119          126 NGVVQPKKVAFVGSGPMPLTSIIMAKHHLTSTHFDNFDIDEAANDVARSIVASDAEFEGRMKFLTRDIMEVKEQLGEYDC  205 (286)
Q Consensus       126 ~~~~~~~~VL~IG~G~lp~tai~lA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~g~l~~~i~f~~~D~~~~~~~l~~fD~  205 (286)
                      .++.++++|||||||+ |..+..||++  .|++|+|||+|+.+++.|++.....| +.++++|+++|+.+++.+.+.||+
T Consensus        63 ~~l~~~~~vLDiGcG~-G~~~~~la~~--~~~~v~gvD~s~~~i~~a~~~~~~~g-l~~~v~~~~~d~~~l~~~~~sfD~  138 (282)
T d2o57a1          63 GVLQRQAKGLDLGAGY-GGAARFLVRK--FGVSIDCLNIAPVQNKRNEEYNNQAG-LADNITVKYGSFLEIPCEDNSYDF  138 (282)
T ss_dssp             TCCCTTCEEEEETCTT-SHHHHHHHHH--HCCEEEEEESCHHHHHHHHHHHHHHT-CTTTEEEEECCTTSCSSCTTCEEE
T ss_pred             cCCCCCCEEEEeCCCC-cHHHhhhhcc--CCcEEEEEeccchhhhhhhccccccc-ccccccccccccccccccccccch
Confidence            3568999999999997 5667788874  58999999999999999999999999 789999999999998877778999


Q ss_pred             eehhhhccCChhHHHHHHHHHHhhccCCcEEEEee
Q 042119          206 IFLAALVGMSKEEKLTILGHIRKYMKDGGILLVRS  240 (286)
Q Consensus       206 V~~aalvg~~~~~k~~vl~~l~~~l~pgg~lv~r~  240 (286)
                      |+..... .+.+++.+++.++.+.|||||++++.+
T Consensus       139 V~~~~~l-~h~~d~~~~l~~~~~~LkpgG~l~~~~  172 (282)
T d2o57a1         139 IWSQDAF-LHSPDKLKVFQECARVLKPRGVMAITD  172 (282)
T ss_dssp             EEEESCG-GGCSCHHHHHHHHHHHEEEEEEEEEEE
T ss_pred             hhccchh-hhccCHHHHHHHHHHhcCCCcEEEEEE
Confidence            9854332 123577889999999999999999865

>d1vl5a_ c.66.1.41 (A:) Hypothetical protein BH2331 {Bacillus halodurans [TaxId: 86665]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: UbiE/COQ5-like
domain: Hypothetical protein BH2331
species: Bacillus halodurans [TaxId: 86665]

Probab=99.73  E-value=7.8e-18  Score=144.89  Aligned_cols=110  Identities=15%  Similarity=0.192  Sum_probs=92.0

Q ss_pred             HhcCCCCCCEEEEeccCCChhhHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEccccchhhcCCCc
Q 042119          124 SENGVVQPKKVAFVGSGPMPLTSIIMAKHHLTSTHFDNFDIDEAANDVARSIVASDAEFEGRMKFLTRDIMEVKEQLGEY  203 (286)
Q Consensus       124 ~~~~~~~~~~VL~IG~G~lp~tai~lA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~g~l~~~i~f~~~D~~~~~~~l~~f  203 (286)
                      ...++++++||||||||+ |..+..+++   .+.+|+|+|+|+++++.|++.+...|.  ++++|+++|+.+++.+.+.|
T Consensus         9 ~~~~l~~~~rVLDiGcG~-G~~~~~l~~---~~~~v~gvD~s~~~i~~A~~~~~~~~~--~~i~~~~~d~~~l~~~~~~f   82 (231)
T d1vl5a_           9 QIAALKGNEEVLDVATGG-GHVANAFAP---FVKKVVAFDLTEDILKVARAFIEGNGH--QQVEYVQGDAEQMPFTDERF   82 (231)
T ss_dssp             HHHTCCSCCEEEEETCTT-CHHHHHHGG---GSSEEEEEESCHHHHHHHHHHHHHTTC--CSEEEEECCC-CCCSCTTCE
T ss_pred             HhcCCCCcCEEEEecccC-cHHHHHHHH---hCCEEEEEECCHHHHhhhhhccccccc--cccccccccccccccccccc
Confidence            345778999999999996 666788888   578999999999999999999999884  78999999999987666789


Q ss_pred             ceeehhhhccCChhHHHHHHHHHHhhccCCcEEEEee
Q 042119          204 DCIFLAALVGMSKEEKLTILGHIRKYMKDGGILLVRS  240 (286)
Q Consensus       204 D~V~~aalvg~~~~~k~~vl~~l~~~l~pgg~lv~r~  240 (286)
                      |+|+....+. +.+++.+++.++.+.|||||++++.+
T Consensus        83 D~v~~~~~l~-~~~d~~~~l~~~~r~LkpgG~l~i~~  118 (231)
T d1vl5a_          83 HIVTCRIAAH-HFPNPASFVSEAYRVLKKGGQLLLVD  118 (231)
T ss_dssp             EEEEEESCGG-GCSCHHHHHHHHHHHEEEEEEEEEEE
T ss_pred             cccccccccc-ccCCHHHHHHHHHHhcCCCcEEEEEe
Confidence            9998654432 23567789999999999999998864

>d1ve3a1 c.66.1.43 (A:2-227) Hypothetical protein PH0226 {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: CAC2371-like
domain: Hypothetical protein PH0226
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=99.72  E-value=2.4e-17  Score=140.43  Aligned_cols=107  Identities=16%  Similarity=0.206  Sum_probs=91.4

Q ss_pred             CCCCCEEEEeccCCChhhHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEccccchhhcCCCcceee
Q 042119          128 VVQPKKVAFVGSGPMPLTSIIMAKHHLTSTHFDNFDIDEAANDVARSIVASDAEFEGRMKFLTRDIMEVKEQLGEYDCIF  207 (286)
Q Consensus       128 ~~~~~~VL~IG~G~lp~tai~lA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~g~l~~~i~f~~~D~~~~~~~l~~fD~V~  207 (286)
                      +++..+|||||||+ |..+..+|+   .|.+|+|+|+|+++++.|++.+...+   .++.++++|+.+++...+.||+|+
T Consensus        35 l~~~~~ILDiGcG~-G~~~~~la~---~~~~v~giD~S~~~i~~ak~~~~~~~---~~~~~~~~d~~~l~~~~~~fD~I~  107 (226)
T d1ve3a1          35 MKKRGKVLDLACGV-GGFSFLLED---YGFEVVGVDISEDMIRKAREYAKSRE---SNVEFIVGDARKLSFEDKTFDYVI  107 (226)
T ss_dssp             CCSCCEEEEETCTT-SHHHHHHHH---TTCEEEEEESCHHHHHHHHHHHHHTT---CCCEEEECCTTSCCSCTTCEEEEE
T ss_pred             cCCCCEEEEECCCc-chhhhhHhh---hhcccccccccccchhhhhhhhcccc---ccccccccccccccccCcCceEEE
Confidence            36778999999996 677789998   78999999999999999999998877   468999999999877777899998


Q ss_pred             hhhhc-cCChhHHHHHHHHHHhhccCCcEEEEeec
Q 042119          208 LAALV-GMSKEEKLTILGHIRKYMKDGGILLVRSA  241 (286)
Q Consensus       208 ~aalv-g~~~~~k~~vl~~l~~~l~pgg~lv~r~~  241 (286)
                      ....+ .++.++..++++++.++|||||++++...
T Consensus       108 ~~~~l~~~~~~d~~~~l~~i~~~LkpgG~lii~~~  142 (226)
T d1ve3a1         108 FIDSIVHFEPLELNQVFKEVRRVLKPSGKFIMYFT  142 (226)
T ss_dssp             EESCGGGCCHHHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred             EecchhhCChhHHHHHHHHHHHHcCcCcEEEEEEc
Confidence            66544 44556778899999999999999988753

>d1wzna1 c.66.1.43 (A:1-251) Hypothetical methyltransferase PH1305 {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: CAC2371-like
domain: Hypothetical methyltransferase PH1305
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=99.72  E-value=2.7e-17  Score=143.13  Aligned_cols=110  Identities=18%  Similarity=0.381  Sum_probs=92.9

Q ss_pred             HHHhcCCCCCCEEEEeccCCChhhHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEccccchhhcCC
Q 042119          122 ILSENGVVQPKKVAFVGSGPMPLTSIIMAKHHLTSTHFDNFDIDEAANDVARSIVASDAEFEGRMKFLTRDIMEVKEQLG  201 (286)
Q Consensus       122 ~l~~~~~~~~~~VL~IG~G~lp~tai~lA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~g~l~~~i~f~~~D~~~~~~~l~  201 (286)
                      .+.+....++++|||||||+ |..++.|++   .|++|+|||+|++|++.|++.+...+   .+++|+++|+.+++.+ +
T Consensus        33 ~~~~~~~~~~~~iLDiGcGt-G~~~~~l~~---~~~~v~gvD~s~~mi~~a~~~~~~~~---~~i~~~~~d~~~l~~~-~  104 (251)
T d1wzna1          33 IFKEDAKREVRRVLDLACGT-GIPTLELAE---RGYEVVGLDLHEEMLRVARRKAKERN---LKIEFLQGDVLEIAFK-N  104 (251)
T ss_dssp             HHHHTCSSCCCEEEEETCTT-CHHHHHHHH---TTCEEEEEESCHHHHHHHHHHHHHTT---CCCEEEESCGGGCCCC-S
T ss_pred             HHHHhcCCCCCEEEEeCCCC-Cccchhhcc---cceEEEEEeecccccccccccccccc---ccchheehhhhhcccc-c
Confidence            34455668889999999996 677888998   68999999999999999999998877   3799999999987765 5


Q ss_pred             Ccceeehh--hhccCChhHHHHHHHHHHhhccCCcEEEEe
Q 042119          202 EYDCIFLA--ALVGMSKEEKLTILGHIRKYMKDGGILLVR  239 (286)
Q Consensus       202 ~fD~V~~a--alvg~~~~~k~~vl~~l~~~l~pgg~lv~r  239 (286)
                      .||+|+..  ++..++.++..++|+++.++|||||++++.
T Consensus       105 ~fD~I~~~~~~~~~~~~~~~~~~L~~~~~~LkpgG~lii~  144 (251)
T d1wzna1         105 EFDAVTMFFSTIMYFDEEDLRKLFSKVAEALKPGGVFITD  144 (251)
T ss_dssp             CEEEEEECSSGGGGSCHHHHHHHHHHHHHHEEEEEEEEEE
T ss_pred             ccchHhhhhhhhhcCChHHHHHHHHHHHHHcCCCcEEEEE
Confidence            79998853  334556778889999999999999999884

>d1xxla_ c.66.1.41 (A:) Hypothetical protein YcgJ {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: UbiE/COQ5-like
domain: Hypothetical protein YcgJ
species: Bacillus subtilis [TaxId: 1423]

Probab=99.72  E-value=9.1e-18  Score=145.86  Aligned_cols=109  Identities=13%  Similarity=0.140  Sum_probs=92.3

Q ss_pred             HhcCCCCCCEEEEeccCCChhhHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEccccchhhcCCCc
Q 042119          124 SENGVVQPKKVAFVGSGPMPLTSIIMAKHHLTSTHFDNFDIDEAANDVARSIVASDAEFEGRMKFLTRDIMEVKEQLGEY  203 (286)
Q Consensus       124 ~~~~~~~~~~VL~IG~G~lp~tai~lA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~g~l~~~i~f~~~D~~~~~~~l~~f  203 (286)
                      ..+.++++.||||||||+ |..+..+|+   .+++|+|||+|+++++.|++.+...|.  +++.|+++|+.+++.+.+.|
T Consensus        10 ~~~~~~~~~rILDiGcGt-G~~~~~la~---~~~~v~gvD~S~~~l~~A~~~~~~~~~--~~~~~~~~d~~~~~~~~~~f   83 (234)
T d1xxla_          10 KTAECRAEHRVLDIGAGA-GHTALAFSP---YVQECIGVDATKEMVEVASSFAQEKGV--ENVRFQQGTAESLPFPDDSF   83 (234)
T ss_dssp             HHHTCCTTCEEEEESCTT-SHHHHHHGG---GSSEEEEEESCHHHHHHHHHHHHHHTC--CSEEEEECBTTBCCSCTTCE
T ss_pred             HHhCCCCCCEEEEeCCcC-cHHHHHHHH---hCCeEEEEeCChhhhhhhhhhhccccc--cccccccccccccccccccc
Confidence            355779999999999997 666778887   468999999999999999999999884  68999999999987776789


Q ss_pred             ceeehhhhccCChhHHHHHHHHHHhhccCCcEEEEe
Q 042119          204 DCIFLAALVGMSKEEKLTILGHIRKYMKDGGILLVR  239 (286)
Q Consensus       204 D~V~~aalvg~~~~~k~~vl~~l~~~l~pgg~lv~r  239 (286)
                      |+|+....+. ..+++.++++++.+.|||||++++.
T Consensus        84 D~v~~~~~l~-~~~d~~~~l~~~~r~LkpgG~~~~~  118 (234)
T d1xxla_          84 DIITCRYAAH-HFSDVRKAVREVARVLKQDGRFLLV  118 (234)
T ss_dssp             EEEEEESCGG-GCSCHHHHHHHHHHHEEEEEEEEEE
T ss_pred             ceeeeeceee-cccCHHHHHHHHHHeeCCCcEEEEE
Confidence            9998654432 2356788999999999999998885

>d1nkva_ c.66.1.21 (A:) Hypothetical Protein YjhP {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Hypothetical Protein YjhP
domain: Hypothetical Protein YjhP
species: Escherichia coli [TaxId: 562]

Probab=99.72  E-value=9.6e-18  Score=146.84  Aligned_cols=110  Identities=14%  Similarity=0.094  Sum_probs=91.5

Q ss_pred             hcCCCCCCEEEEeccCCChhhHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEccccchhhcCCCcc
Q 042119          125 ENGVVQPKKVAFVGSGPMPLTSIIMAKHHLTSTHFDNFDIDEAANDVARSIVASDAEFEGRMKFLTRDIMEVKEQLGEYD  204 (286)
Q Consensus       125 ~~~~~~~~~VL~IG~G~lp~tai~lA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~g~l~~~i~f~~~D~~~~~~~l~~fD  204 (286)
                      ..++.++++|||||||++ ..+..+|++  .|++|+|||+|+.+++.|++.++..| ++++++|+++|+.++. ..++||
T Consensus        28 ~~~l~pg~~VLDiGCG~G-~~~~~la~~--~~~~v~GvD~s~~~~~~ar~~~~~~g-l~~~v~~~~~d~~~~~-~~~~fD  102 (245)
T d1nkva_          28 VLRMKPGTRILDLGSGSG-EMLCTWARD--HGITGTGIDMSSLFTAQAKRRAEELG-VSERVHFIHNDAAGYV-ANEKCD  102 (245)
T ss_dssp             HTCCCTTCEEEEETCTTC-HHHHHHHHH--TCCEEEEEESCHHHHHHHHHHHHHTT-CTTTEEEEESCCTTCC-CSSCEE
T ss_pred             HcCCCCCCEEEEEcCCCC-HHHHHHHHh--cCCEEEEEecccchhhHHHHHHHHhh-ccccchhhhhHHhhcc-ccCcee
Confidence            346789999999999975 456677773  57999999999999999999999999 7899999999998864 346899


Q ss_pred             eeehhhhccCChhHHHHHHHHHHhhccCCcEEEEee
Q 042119          205 CIFLAALVGMSKEEKLTILGHIRKYMKDGGILLVRS  240 (286)
Q Consensus       205 ~V~~aalvg~~~~~k~~vl~~l~~~l~pgg~lv~r~  240 (286)
                      +|+....+ ++..++..+++++++.|||||++++..
T Consensus       103 ~v~~~~~~-~~~~d~~~~l~~~~r~LkPGG~l~i~~  137 (245)
T d1nkva_         103 VAACVGAT-WIAGGFAGAEELLAQSLKPGGIMLIGE  137 (245)
T ss_dssp             EEEEESCG-GGTSSSHHHHHHHTTSEEEEEEEEEEE
T ss_pred             EEEEEehh-hccCCHHHHHHHHHHHcCcCcEEEEEe
Confidence            99854332 223577889999999999999999975

>d1l3ia_ c.66.1.22 (A:) Precorrin-6Y methyltransferase (CbiT) {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Precorrin-6Y methyltransferase (CbiT)
domain: Precorrin-6Y methyltransferase (CbiT)
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=99.70  E-value=4.2e-17  Score=137.86  Aligned_cols=109  Identities=16%  Similarity=0.164  Sum_probs=93.7

Q ss_pred             HHhcCCCCCCEEEEeccCCChhhHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEccccchhhcCCC
Q 042119          123 LSENGVVQPKKVAFVGSGPMPLTSIIMAKHHLTSTHFDNFDIDEAANDVARSIVASDAEFEGRMKFLTRDIMEVKEQLGE  202 (286)
Q Consensus       123 l~~~~~~~~~~VL~IG~G~lp~tai~lA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~g~l~~~i~f~~~D~~~~~~~l~~  202 (286)
                      +....+.++++|||||||+ |..++.+|+   .+.+|+++|+|+++++.|++++++.| +.++++++++|+.+...+...
T Consensus        26 l~~l~~~~g~~VLDiGcGs-G~~s~~lA~---~~~~V~avD~~~~~l~~a~~n~~~~g-l~~~v~~~~gda~~~~~~~~~  100 (186)
T d1l3ia_          26 MCLAEPGKNDVAVDVGCGT-GGVTLELAG---RVRRVYAIDRNPEAISTTEMNLQRHG-LGDNVTLMEGDAPEALCKIPD  100 (186)
T ss_dssp             HHHHCCCTTCEEEEESCTT-SHHHHHHHT---TSSEEEEEESCHHHHHHHHHHHHHTT-CCTTEEEEESCHHHHHTTSCC
T ss_pred             HHhcCCCCCCEEEEEECCe-Ecccccccc---cceEEEEecCCHHHHHHHHHHHHHcC-CCcceEEEECchhhcccccCC
Confidence            4455789999999999997 555678887   57899999999999999999999999 788999999999988888789


Q ss_pred             cceeehhhhccCChhHHHHHHHHHHhhccCCcEEEEee
Q 042119          203 YDCIFLAALVGMSKEEKLTILGHIRKYMKDGGILLVRS  240 (286)
Q Consensus       203 fD~V~~aalvg~~~~~k~~vl~~l~~~l~pgg~lv~r~  240 (286)
                      ||.||+....    ..-.++++.+.+.|||||.+++..
T Consensus       101 ~D~v~~~~~~----~~~~~~~~~~~~~LkpgG~lvi~~  134 (186)
T d1l3ia_         101 IDIAVVGGSG----GELQEILRIIKDKLKPGGRIIVTA  134 (186)
T ss_dssp             EEEEEESCCT----TCHHHHHHHHHHTEEEEEEEEEEE
T ss_pred             cCEEEEeCcc----ccchHHHHHHHHHhCcCCEEEEEe
Confidence            9999976433    345679999999999999998864

>d2i6ga1 c.66.1.44 (A:1-198) Putative methyltransferase TehB {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: TehB-like
domain: Putative methyltransferase TehB
species: Salmonella typhimurium [TaxId: 90371]

Probab=99.70  E-value=5.8e-17  Score=137.57  Aligned_cols=106  Identities=20%  Similarity=0.285  Sum_probs=89.7

Q ss_pred             CCCCCEEEEeccCCChhhHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEccccchhhcCCCcceee
Q 042119          128 VVQPKKVAFVGSGPMPLTSIIMAKHHLTSTHFDNFDIDEAANDVARSIVASDAEFEGRMKFLTRDIMEVKEQLGEYDCIF  207 (286)
Q Consensus       128 ~~~~~~VL~IG~G~lp~tai~lA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~g~l~~~i~f~~~D~~~~~~~l~~fD~V~  207 (286)
                      ...+.||||||||. |..++.||+   .|.+|+|+|+|+++++.|++..+..|.  +++++.++|+.+... .+.||+|+
T Consensus        28 ~~~~grvLDiGcG~-G~~~~~la~---~g~~v~gvD~s~~~l~~a~~~~~~~~~--~~~~~~~~d~~~~~~-~~~fD~I~  100 (198)
T d2i6ga1          28 VVAPGRTLDLGCGN-GRNSLYLAA---NGYDVTAWDKNPASMANLERIKAAEGL--DNLQTDLVDLNTLTF-DGEYDFIL  100 (198)
T ss_dssp             TSCSCEEEEETCTT-SHHHHHHHH---TTCEEEEEESCHHHHHHHHHHHHHTTC--TTEEEEECCTTTCCC-CCCEEEEE
T ss_pred             cCCCCcEEEECCCC-CHHHHHHHH---HhhhhccccCcHHHHHHHHHHhhhccc--cchhhhheecccccc-cccccEEE
Confidence            34567999999995 788899998   689999999999999999999999984  689999999877654 35899998


Q ss_pred             hhhhc-cCChhHHHHHHHHHHhhccCCcEEEEee
Q 042119          208 LAALV-GMSKEEKLTILGHIRKYMKDGGILLVRS  240 (286)
Q Consensus       208 ~aalv-g~~~~~k~~vl~~l~~~l~pgg~lv~r~  240 (286)
                      ..... .++.++..++++++.+.|+|||++++..
T Consensus       101 ~~~~~~~~~~~~~~~~l~~~~~~L~pgG~~~~~~  134 (198)
T d2i6ga1         101 STVVMMFLEAQTIPGLIANMQRCTKPGGYNLIVA  134 (198)
T ss_dssp             EESCGGGSCTTHHHHHHHHHHHTEEEEEEEEEEE
T ss_pred             EeeeeecCCHHHHHHHHHHHHHHcCCCcEEEEEE
Confidence            54433 5566777899999999999999988865

>d1im8a_ c.66.1.14 (A:) Hypothetical protein HI0319 (YecO) {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Hypothetical protein HI0319 (YecO)
domain: Hypothetical protein HI0319 (YecO)
species: Haemophilus influenzae [TaxId: 727]

Probab=99.66  E-value=4.7e-16  Score=134.25  Aligned_cols=126  Identities=16%  Similarity=0.246  Sum_probs=97.8

Q ss_pred             cCccchhhhhHHHHHHHHhcCCCCCCEEEEeccCCChhhHHHHHhh-cCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCC
Q 042119          107 PYYGNYVKLSKLEYTILSENGVVQPKKVAFVGSGPMPLTSIIMAKH-HLTSTHFDNFDIDEAANDVARSIVASDAEFEGR  185 (286)
Q Consensus       107 py~~ny~~l~~~E~~~l~~~~~~~~~~VL~IG~G~lp~tai~lA~~-~~~g~~V~~iDid~~ai~~Ar~~~~~~g~l~~~  185 (286)
                      |+|+...+++..   .+.++ .+++.+|||||||+ |..++.+++. ..++++|+|+|+|++|++.|++.++..+ ...+
T Consensus        20 P~Y~~~~~~i~~---~~~~~-~~~~~~vLDlGCGt-G~~~~~l~~~~~~~~~~v~giD~S~~ml~~A~~~~~~~~-~~~~   93 (225)
T d1im8a_          20 PGYSNIITAIGM---LAERF-VTADSNVYDLGCSR-GAATLSARRNINQPNVKIIGIDNSQPMVERCRQHIAAYH-SEIP   93 (225)
T ss_dssp             TTHHHHHHHHHH---HHHHH-CCTTCEEEEESCTT-CHHHHHHHHTCCCSSCEEEEECSCHHHHHHHHHHHHTSC-CSSC
T ss_pred             CCHHHHHHHHHH---HHHHh-cCCCCEEEEeccch-hhHHHHHHHhhcCCCCceEEeCCCHHHHHHHHHHhHhhc-ccch
Confidence            777666544432   22233 36788999999997 6666777763 2489999999999999999999999888 6788


Q ss_pred             eEEEEccccchhhcCCCcceeehhhhc-cCChhHHHHHHHHHHhhccCCcEEEEee
Q 042119          186 MKFLTRDIMEVKEQLGEYDCIFLAALV-GMSKEEKLTILGHIRKYMKDGGILLVRS  240 (286)
Q Consensus       186 i~f~~~D~~~~~~~l~~fD~V~~aalv-g~~~~~k~~vl~~l~~~l~pgg~lv~r~  240 (286)
                      +++.++|..+.+  ...||+|+..... .++.+++.++|+++++.|||||.+++.+
T Consensus        94 ~~~~~~d~~~~~--~~~~d~i~~~~~l~~~~~~d~~~~l~~i~~~LkpgG~li~~~  147 (225)
T d1im8a_          94 VEILCNDIRHVE--IKNASMVILNFTLQFLPPEDRIALLTKIYEGLNPNGVLVLSE  147 (225)
T ss_dssp             EEEECSCTTTCC--CCSEEEEEEESCGGGSCGGGHHHHHHHHHHHEEEEEEEEEEE
T ss_pred             hhhccchhhccc--cccceeeEEeeeccccChhhHHHHHHHHHHhCCCCceeeccc
Confidence            999999986643  4578887755433 4466788899999999999999999864

>d1yb2a1 c.66.1.13 (A:6-255) Hypothetical protein Ta0852 {Thermoplasma acidophilum [TaxId: 2303]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: tRNA(1-methyladenosine) methyltransferase-like
domain: Hypothetical protein Ta0852
species: Thermoplasma acidophilum [TaxId: 2303]

Probab=99.64  E-value=1.2e-16  Score=142.04  Aligned_cols=109  Identities=16%  Similarity=0.095  Sum_probs=89.3

Q ss_pred             HHhcCCCCCCEEEEeccCCChhhHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEccccchhhcCCC
Q 042119          123 LSENGVVQPKKVAFVGSGPMPLTSIIMAKHHLTSTHFDNFDIDEAANDVARSIVASDAEFEGRMKFLTRDIMEVKEQLGE  202 (286)
Q Consensus       123 l~~~~~~~~~~VL~IG~G~lp~tai~lA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~g~l~~~i~f~~~D~~~~~~~l~~  202 (286)
                      +.+.+++++++|||+|||++ ..++.||+...++++|+++|+++++++.|++++++.+ ..+++++..+|+.+... ...
T Consensus        78 i~~l~i~pG~rVLEiG~GsG-~lt~~la~~v~~~g~V~~vD~~e~~~~~A~~n~~~~~-~~~nv~~~~~Di~~~~~-~~~  154 (250)
T d1yb2a1          78 IMRCGLRPGMDILEVGVGSG-NMSSYILYALNGKGTLTVVERDEDNLKKAMDNLSEFY-DIGNVRTSRSDIADFIS-DQM  154 (250)
T ss_dssp             ---CCCCTTCEEEEECCTTS-HHHHHHHHHHTTSSEEEEECSCHHHHHHHHHHHHTTS-CCTTEEEECSCTTTCCC-SCC
T ss_pred             HHHcCCCCcCEEEEeeeeCc-HHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHhc-CCCceEEEEeeeecccc-cce
Confidence            44557899999999999975 5557788755688999999999999999999999987 56899999999977543 357


Q ss_pred             cceeehhhhccCChhHHHHHHHHHHhhccCCcEEEEee
Q 042119          203 YDCIFLAALVGMSKEEKLTILGHIRKYMKDGGILLVRS  240 (286)
Q Consensus       203 fD~V~~aalvg~~~~~k~~vl~~l~~~l~pgg~lv~r~  240 (286)
                      ||.|+++.      ++..++++++.+.|||||++++-.
T Consensus       155 fD~V~ld~------p~p~~~l~~~~~~LKpGG~lv~~~  186 (250)
T d1yb2a1         155 YDAVIADI------PDPWNHVQKIASMMKPGSVATFYL  186 (250)
T ss_dssp             EEEEEECC------SCGGGSHHHHHHTEEEEEEEEEEE
T ss_pred             eeeeeecC------CchHHHHHHHHHhcCCCceEEEEe
Confidence            99999752      345679999999999999999854

>d1y8ca_ c.66.1.43 (A:) Putative methyltransferase CAC2371 {Clostridium acetobutylicum [TaxId: 1488]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: CAC2371-like
domain: Putative methyltransferase CAC2371
species: Clostridium acetobutylicum [TaxId: 1488]

Probab=99.64  E-value=8e-16  Score=134.18  Aligned_cols=102  Identities=11%  Similarity=0.132  Sum_probs=84.5

Q ss_pred             CCCCEEEEeccCCChhhHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEccccchhhcCCCcceeeh
Q 042119          129 VQPKKVAFVGSGPMPLTSIIMAKHHLTSTHFDNFDIDEAANDVARSIVASDAEFEGRMKFLTRDIMEVKEQLGEYDCIFL  208 (286)
Q Consensus       129 ~~~~~VL~IG~G~lp~tai~lA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~g~l~~~i~f~~~D~~~~~~~l~~fD~V~~  208 (286)
                      .++++|||||||+ |.-+..||+   .|.+|+|||+|++|++.|++.+...|   .+++|+++|+.++..+ +.||+|+.
T Consensus        36 ~~~~~vLDiGCG~-G~~~~~l~~---~g~~v~GvD~S~~ml~~A~~~~~~~~---~~v~~~~~d~~~~~~~-~~fD~i~~  107 (246)
T d1y8ca_          36 LVFDDYLDLACGT-GNLTENLCP---KFKNTWAVDLSQEMLSEAENKFRSQG---LKPRLACQDISNLNIN-RKFDLITC  107 (246)
T ss_dssp             CCTTEEEEETCTT-STTHHHHGG---GSSEEEEECSCHHHHHHHHHHHHHTT---CCCEEECCCGGGCCCS-CCEEEEEE
T ss_pred             CCCCeEEEEeCcC-CHHHHHHHH---hCCccEeeccchhhhhhccccccccC---ccceeeccchhhhccc-ccccccce
Confidence            5568999999997 556678888   67899999999999999999998887   3799999999886543 57999874


Q ss_pred             h--hhc-cCChhHHHHHHHHHHhhccCCcEEEE
Q 042119          209 A--ALV-GMSKEEKLTILGHIRKYMKDGGILLV  238 (286)
Q Consensus       209 a--alv-g~~~~~k~~vl~~l~~~l~pgg~lv~  238 (286)
                      .  ++- -.+.++..++++++++.|+|||.+++
T Consensus       108 ~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~~i~  140 (246)
T d1y8ca_         108 CLDSTNYIIDSDDLKKYFKAVSNHLKEGGVFIF  140 (246)
T ss_dssp             CTTGGGGCCSHHHHHHHHHHHHTTEEEEEEEEE
T ss_pred             eeeeeeccCCHHHHHHHHHHHHHhCCCCeEEEE
Confidence            2  221 23567888999999999999999986

>d1pjza_ c.66.1.36 (A:) Thiopurine S-methyltransferase {Pseudomonas syringae [TaxId: 317]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Thiopurine S-methyltransferase
domain: Thiopurine S-methyltransferase
species: Pseudomonas syringae [TaxId: 317]

Probab=99.64  E-value=1.9e-16  Score=131.56  Aligned_cols=110  Identities=13%  Similarity=0.128  Sum_probs=89.9

Q ss_pred             cCCCCCCEEEEeccCCChhhHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCC-----------CCCeEEEEcccc
Q 042119          126 NGVVQPKKVAFVGSGPMPLTSIIMAKHHLTSTHFDNFDIDEAANDVARSIVASDAEF-----------EGRMKFLTRDIM  194 (286)
Q Consensus       126 ~~~~~~~~VL~IG~G~lp~tai~lA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~g~l-----------~~~i~f~~~D~~  194 (286)
                      ..+.+++||||||||+ |..+++||+   .|.+|||+|+|++|++.|++.++..+ .           ...++|.++|..
T Consensus        16 l~~~~~~rvLd~GCG~-G~~a~~la~---~G~~V~gvD~S~~~i~~a~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~d~~   90 (201)
T d1pjza_          16 LNVVPGARVLVPLCGK-SQDMSWLSG---QGYHVVGAELSEAAVERYFTERGEQP-HITSQGDFKVYAAPGIEIWCGDFF   90 (201)
T ss_dssp             HCCCTTCEEEETTTCC-SHHHHHHHH---HCCEEEEEEECHHHHHHHHHHHCSCS-EEEEETTEEEEECSSSEEEEECCS
T ss_pred             cCCCCCCEEEEecCcC-CHHHHHHHH---cCCceEeecccHHHHHHHHHHhcccc-chhhhhhhhhccccccceeccccc
Confidence            3568999999999996 778899998   69999999999999999999987654 2           246789999998


Q ss_pred             chhhcC-CCcceeehhhhc-cCChhHHHHHHHHHHhhccCCcEEEEee
Q 042119          195 EVKEQL-GEYDCIFLAALV-GMSKEEKLTILGHIRKYMKDGGILLVRS  240 (286)
Q Consensus       195 ~~~~~l-~~fD~V~~aalv-g~~~~~k~~vl~~l~~~l~pgg~lv~r~  240 (286)
                      ++.... ..||+|+..... ....+++..+++++++.|||||.+++..
T Consensus        91 ~l~~~~~~~~D~i~~~~~l~~l~~~~~~~~~~~i~~~LkpgG~l~l~~  138 (201)
T d1pjza_          91 ALTARDIGHCAAFYDRAAMIALPADMRERYVQHLEALMPQACSGLLIT  138 (201)
T ss_dssp             SSTHHHHHSEEEEEEESCGGGSCHHHHHHHHHHHHHHSCSEEEEEEEE
T ss_pred             ccccccccceeEEEEEeeeEecchhhhHHHHHHHHHhcCCCcEEEEEE
Confidence            765433 479999865433 4556778899999999999999987765

>d2ex4a1 c.66.1.42 (A:2-224) Adrenal gland protein AD-003 (C9orf32) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: AD-003 protein-like
domain: Adrenal gland protein AD-003 (C9orf32)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.61  E-value=1.6e-15  Score=130.79  Aligned_cols=108  Identities=12%  Similarity=0.206  Sum_probs=87.4

Q ss_pred             CCCCCEEEEeccCCChhhHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEccccchhhcCCCcceee
Q 042119          128 VVQPKKVAFVGSGPMPLTSIIMAKHHLTSTHFDNFDIDEAANDVARSIVASDAEFEGRMKFLTRDIMEVKEQLGEYDCIF  207 (286)
Q Consensus       128 ~~~~~~VL~IG~G~lp~tai~lA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~g~l~~~i~f~~~D~~~~~~~l~~fD~V~  207 (286)
                      ..++.+|||||||+ |..+..+++.  .+.+|+|||+|+++++.|++.+...|.  .+++|+++|+.+++.+.+.||+|+
T Consensus        58 ~~~~~~vLDiGcG~-G~~~~~l~~~--~~~~v~~vD~s~~~l~~ak~~~~~~~~--~~~~f~~~d~~~~~~~~~~fD~I~  132 (222)
T d2ex4a1          58 KTGTSCALDCGAGI-GRITKRLLLP--LFREVDMVDITEDFLVQAKTYLGEEGK--RVRNYFCCGLQDFTPEPDSYDVIW  132 (222)
T ss_dssp             CCCCSEEEEETCTT-THHHHHTTTT--TCSEEEEEESCHHHHHHHHHHTGGGGG--GEEEEEECCGGGCCCCSSCEEEEE
T ss_pred             CCCCCEEEEeccCC-CHhhHHHHHh--cCCEEEEeecCHHHhhccccccccccc--cccccccccccccccccccccccc
Confidence            35678999999997 5455555541  456899999999999999999888773  678999999999876667899998


Q ss_pred             hhhhc-cCChhHHHHHHHHHHhhccCCcEEEEee
Q 042119          208 LAALV-GMSKEEKLTILGHIRKYMKDGGILLVRS  240 (286)
Q Consensus       208 ~aalv-g~~~~~k~~vl~~l~~~l~pgg~lv~r~  240 (286)
                      ....+ ..+.++..+++.++++.|+|||.+++.+
T Consensus       133 ~~~~l~h~~~~~~~~~l~~i~~~Lk~~G~~~i~~  166 (222)
T d2ex4a1         133 IQWVIGHLTDQHLAEFLRRCKGSLRPNGIIVIKD  166 (222)
T ss_dssp             EESCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred             cccccccchhhhhhhHHHHHHHhcCCcceEEEEE
Confidence            76544 3355566789999999999999999875

>d2gh1a1 c.66.1.49 (A:13-293) Methyltransferase BC2162 {Bacillus cereus [TaxId: 1396]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: BC2162-like
domain: Methyltransferase BC2162
species: Bacillus cereus [TaxId: 1396]

Probab=99.60  E-value=1e-15  Score=137.19  Aligned_cols=108  Identities=18%  Similarity=0.247  Sum_probs=89.0

Q ss_pred             CCCCCEEEEeccCCChhhHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEccccchhhcCCCcceee
Q 042119          128 VVQPKKVAFVGSGPMPLTSIIMAKHHLTSTHFDNFDIDEAANDVARSIVASDAEFEGRMKFLTRDIMEVKEQLGEYDCIF  207 (286)
Q Consensus       128 ~~~~~~VL~IG~G~lp~tai~lA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~g~l~~~i~f~~~D~~~~~~~l~~fD~V~  207 (286)
                      +.+|.+|||||||+ |..+..+|+....+++|+|+|+|+++++.|++.+...+   .+++|+++|+.+++.+ +.||+|+
T Consensus        25 ~~~~~~ILDiGcG~-G~~~~~la~~~~~~~~v~giD~s~~~l~~a~~~~~~~~---~~~~f~~~d~~~~~~~-~~fD~v~   99 (281)
T d2gh1a1          25 ITKPVHIVDYGCGY-GYLGLVLMPLLPEGSKYTGIDSGETLLAEARELFRLLP---YDSEFLEGDATEIELN-DKYDIAI   99 (281)
T ss_dssp             CCSCCEEEEETCTT-THHHHHHTTTSCTTCEEEEEECCHHHHHHHHHHHHSSS---SEEEEEESCTTTCCCS-SCEEEEE
T ss_pred             cCCcCEEEEecCcC-CHHHHHHHHhCCCCCEEEEEecchhHhhhhhccccccc---cccccccccccccccc-CCceEEE
Confidence            57889999999996 67778888733347899999999999999999999887   3799999999886643 4799998


Q ss_pred             hhhhccCChhHHHHHHHHHHhhccCCcEEEEeec
Q 042119          208 LAALVGMSKEEKLTILGHIRKYMKDGGILLVRSA  241 (286)
Q Consensus       208 ~aalvg~~~~~k~~vl~~l~~~l~pgg~lv~r~~  241 (286)
                      ....+. +.+++.++++++.+.|||||.+++.++
T Consensus       100 ~~~~l~-~~~d~~~~l~~~~~~LkpgG~lii~~~  132 (281)
T d2gh1a1         100 CHAFLL-HMTTPETMLQKMIHSVKKGGKIICFEP  132 (281)
T ss_dssp             EESCGG-GCSSHHHHHHHHHHTEEEEEEEEEEEC
T ss_pred             Eehhhh-cCCCHHHHHHHHHHHcCcCcEEEEEEC
Confidence            665442 234667899999999999999998764

>d2fk8a1 c.66.1.18 (A:22-301) Methoxy mycolic acid synthase 4, Mma4 {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Mycolic acid cyclopropane synthase
domain: Methoxy mycolic acid synthase 4, Mma4
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.59  E-value=5e-15  Score=133.29  Aligned_cols=112  Identities=12%  Similarity=0.047  Sum_probs=92.6

Q ss_pred             HHHhcCCCCCCEEEEeccCCChhhHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEccccchhhcCC
Q 042119          122 ILSENGVVQPKKVAFVGSGPMPLTSIIMAKHHLTSTHFDNFDIDEAANDVARSIVASDAEFEGRMKFLTRDIMEVKEQLG  201 (286)
Q Consensus       122 ~l~~~~~~~~~~VL~IG~G~lp~tai~lA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~g~l~~~i~f~~~D~~~~~~~l~  201 (286)
                      .+.+.+++++++|||||||.+++ ++.+|++  .|++|||||+|++.++.|++.+++.| +..++.+...|..+++   +
T Consensus        44 ~~~~l~l~~g~~VLDiGCG~G~~-a~~~a~~--~g~~v~gi~ls~~q~~~a~~~~~~~~-l~~~~~~~~~d~~~~~---~  116 (280)
T d2fk8a1          44 NLDKLDLKPGMTLLDIGCGWGTT-MRRAVER--FDVNVIGLTLSKNQHARCEQVLASID-TNRSRQVLLQGWEDFA---E  116 (280)
T ss_dssp             HHTTSCCCTTCEEEEESCTTSHH-HHHHHHH--HCCEEEEEESCHHHHHHHHHHHHTSC-CSSCEEEEESCGGGCC---C
T ss_pred             HHHHcCCCCCCEEEEecCCchHH-HHHHHHh--CceeEEEecchHHHHHHHHHHHHhhc-cccchhhhhhhhhhhc---c
Confidence            55566789999999999997654 5778873  68999999999999999999999999 7889999999976543   5


Q ss_pred             Ccceeehhhh-ccCChhHHHHHHHHHHhhccCCcEEEEee
Q 042119          202 EYDCIFLAAL-VGMSKEEKLTILGHIRKYMKDGGILLVRS  240 (286)
Q Consensus       202 ~fD~V~~aal-vg~~~~~k~~vl~~l~~~l~pgg~lv~r~  240 (286)
                      .||.|+.-.. -++..+.+..+++.+.+.|||||++++.+
T Consensus       117 ~fD~i~si~~~eh~~~~~~~~~f~~i~~~LkpgG~~~i~~  156 (280)
T d2fk8a1         117 PVDRIVSIEAFEHFGHENYDDFFKRCFNIMPADGRMTVQS  156 (280)
T ss_dssp             CCSEEEEESCGGGTCGGGHHHHHHHHHHHSCTTCEEEEEE
T ss_pred             chhhhhHhhHHHHhhhhhHHHHHHHHHhccCCCceEEEEE
Confidence            7998874333 25555677899999999999999999864

>d2bzga1 c.66.1.36 (A:17-245) Thiopurine S-methyltransferase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Thiopurine S-methyltransferase
domain: Thiopurine S-methyltransferase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.59  E-value=2.2e-15  Score=130.73  Aligned_cols=110  Identities=12%  Similarity=0.090  Sum_probs=89.9

Q ss_pred             CCCCCCEEEEeccCCChhhHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCC---------------CCCCeEEEEc
Q 042119          127 GVVQPKKVAFVGSGPMPLTSIIMAKHHLTSTHFDNFDIDEAANDVARSIVASDAE---------------FEGRMKFLTR  191 (286)
Q Consensus       127 ~~~~~~~VL~IG~G~lp~tai~lA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~g~---------------l~~~i~f~~~  191 (286)
                      .+.++.|||++|||. |..+.+||+   .|.+|||||+|++|++.|++.....+.               ...+++|.++
T Consensus        42 ~~~~~~rvLd~GCG~-G~~a~~LA~---~G~~V~gvD~S~~ai~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~  117 (229)
T d2bzga1          42 KGKSGLRVFFPLCGK-AVEMKWFAD---RGHSVVGVEISELGIQEFFTEQNLSYSEEPITEIPGTKVFKSSSGNISLYCC  117 (229)
T ss_dssp             TTCCSCEEEETTCTT-CTHHHHHHH---TTCEEEEECSCHHHHHHHHHHTTCCEEEEECTTSTTCEEEEETTSSEEEEES
T ss_pred             CCCCCCEEEEeCCCC-cHHHHHHHh---CCCcEEEEeCCHHHHHHHHHHhhccccccchhcccccceeeecCCcEEEEEc
Confidence            346889999999995 788999999   799999999999999999998653210               1358999999


Q ss_pred             cccchhhcC-CCcceeehhhh-ccCChhHHHHHHHHHHhhccCCcEEEEee
Q 042119          192 DIMEVKEQL-GEYDCIFLAAL-VGMSKEEKLTILGHIRKYMKDGGILLVRS  240 (286)
Q Consensus       192 D~~~~~~~l-~~fD~V~~aal-vg~~~~~k~~vl~~l~~~l~pgg~lv~r~  240 (286)
                      |..++.... ..||+|+.... ..++.+++..+++++.+.|||||.+++..
T Consensus       118 d~~~l~~~~~~~fd~i~~~~~l~~~~~~~r~~~~~~~~~~LkpgG~~~l~~  168 (229)
T d2bzga1         118 SIFDLPRTNIGKFDMIWDRGALVAINPGDRKCYADTMFSLLGKKFQYLLCV  168 (229)
T ss_dssp             CGGGGGGSCCCCEEEEEESSSTTTSCGGGHHHHHHHHHHTEEEEEEEEEEE
T ss_pred             chhhccccccCceeEEEEEEEEEeccchhhHHHHHHHHhhcCCcceEEEEE
Confidence            998876544 46999986544 46677889999999999999999876654

>d1kpga_ c.66.1.18 (A:) CmaA1 {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Mycolic acid cyclopropane synthase
domain: CmaA1
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.58  E-value=9.1e-15  Score=132.01  Aligned_cols=113  Identities=13%  Similarity=0.155  Sum_probs=93.6

Q ss_pred             HHHHhcCCCCCCEEEEeccCCChhhHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEccccchhhcC
Q 042119          121 TILSENGVVQPKKVAFVGSGPMPLTSIIMAKHHLTSTHFDNFDIDEAANDVARSIVASDAEFEGRMKFLTRDIMEVKEQL  200 (286)
Q Consensus       121 ~~l~~~~~~~~~~VL~IG~G~lp~tai~lA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~g~l~~~i~f~~~D~~~~~~~l  200 (286)
                      ..+.+.+++++.+|||||||- |-.++.+|+.  .|++||||++|++.++.|++.+++.| +.+++++..+|..+++   
T Consensus        53 ~~~~~l~l~~G~~VLDiGCG~-G~~a~~~a~~--~g~~v~git~s~~Q~~~a~~~~~~~g-~~~~v~~~~~d~~~~~---  125 (285)
T d1kpga_          53 LALGKLGLQPGMTLLDVGCGW-GATMMRAVEK--YDVNVVGLTLSKNQANHVQQLVANSE-NLRSKRVLLAGWEQFD---  125 (285)
T ss_dssp             HHHTTTTCCTTCEEEEETCTT-SHHHHHHHHH--HCCEEEEEESCHHHHHHHHHHHHTCC-CCSCEEEEESCGGGCC---
T ss_pred             HHHHHcCCCCCCEEEEecCcc-hHHHHHHHhc--CCcceEEEeccHHHHHHHHHHHHhhh-hhhhhHHHHhhhhccc---
Confidence            356677889999999999995 6677888884  68999999999999999999999999 7899999999986654   


Q ss_pred             CCcceeehh-hhccCChhHHHHHHHHHHhhccCCcEEEEee
Q 042119          201 GEYDCIFLA-ALVGMSKEEKLTILGHIRKYMKDGGILLVRS  240 (286)
Q Consensus       201 ~~fD~V~~a-alvg~~~~~k~~vl~~l~~~l~pgg~lv~r~  240 (286)
                      +.||.|+.- .+-++....+..+++++.+.|||||++++.+
T Consensus       126 ~~fD~i~si~~~eh~~~~~~~~~~~~~~r~LkpgG~~~l~~  166 (285)
T d1kpga_         126 EPVDRIVSIGAFEHFGHERYDAFFSLAHRLLPADGVMLLHT  166 (285)
T ss_dssp             CCCSEEEEESCGGGTCTTTHHHHHHHHHHHSCTTCEEEEEE
T ss_pred             ccccceeeehhhhhcCchhHHHHHHHHHhhcCCCCcEEEEE
Confidence            478977632 2223334567899999999999999998854

>d2avda1 c.66.1.1 (A:44-262) COMT domain-containing protein 1, COMTD1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: COMT-like
domain: COMT domain-containing protein 1, COMTD1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.58  E-value=2.9e-15  Score=130.53  Aligned_cols=107  Identities=17%  Similarity=0.247  Sum_probs=94.9

Q ss_pred             CCCCEEEEeccCCChhhHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEccccchhhc------CCC
Q 042119          129 VQPKKVAFVGSGPMPLTSIIMAKHHLTSTHFDNFDIDEAANDVARSIVASDAEFEGRMKFLTRDIMEVKEQ------LGE  202 (286)
Q Consensus       129 ~~~~~VL~IG~G~lp~tai~lA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~g~l~~~i~f~~~D~~~~~~~------l~~  202 (286)
                      ..+++||+|||| .|+|++++|+....+++|+++|++++..+.|++.+++.| ++++++++.||+.+....      ...
T Consensus        58 ~~~k~vLEiGt~-~GyStl~~a~al~~~g~i~tie~~~~~~~~A~~~~~~ag-~~~~i~~~~Gda~e~l~~~~~~~~~~~  135 (219)
T d2avda1          58 IQAKKALDLGTF-TGYSALALALALPADGRVVTCEVDAQPPELGRPLWRQAE-AEHKIDLRLKPALETLDELLAAGEAGT  135 (219)
T ss_dssp             TTCCEEEEECCT-TSHHHHHHHTTSCTTCEEEEEESCSHHHHHHHHHHHHTT-CTTTEEEEESCHHHHHHHHHHTTCTTC
T ss_pred             cCCCeEEEEech-hhHHHHHHHHhCCCCceEEEEeechhHHHHHHHHHHhcC-ccceEEEEEeehhhcchhhhhhcccCC
Confidence            578999999999 699999999954458999999999999999999999999 899999999999775532      246


Q ss_pred             cceeehhhhccCChhHHHHHHHHHHhhccCCcEEEEeec
Q 042119          203 YDCIFLAALVGMSKEEKLTILGHIRKYMKDGGILLVRSA  241 (286)
Q Consensus       203 fD~V~~aalvg~~~~~k~~vl~~l~~~l~pgg~lv~r~~  241 (286)
                      ||+||+++-.    +.....++.+.+.|+|||++++.+.
T Consensus       136 fD~ifiD~dk----~~y~~~~~~~~~lL~~GGvii~Dn~  170 (219)
T d2avda1         136 FDVAVVDADK----ENCSAYYERCLQLLRPGGILAVLRV  170 (219)
T ss_dssp             EEEEEECSCS----TTHHHHHHHHHHHEEEEEEEEEECC
T ss_pred             ccEEEEeCCH----HHHHHHHHHHHHHhcCCcEEEEeCC
Confidence            9999999754    6778899999999999999999985

>d1tw3a2 c.66.1.12 (A:99-351) Carminomycin 4-O-methyltransferase {Streptomyces peucetius [TaxId: 1950]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Plant O-methyltransferase, C-terminal domain
domain: Carminomycin 4-O-methyltransferase
species: Streptomyces peucetius [TaxId: 1950]

Probab=99.57  E-value=7.4e-15  Score=129.38  Aligned_cols=108  Identities=19%  Similarity=0.301  Sum_probs=90.8

Q ss_pred             CCCCCCEEEEeccCCChhhHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEccccchhhcCCCccee
Q 042119          127 GVVQPKKVAFVGSGPMPLTSIIMAKHHLTSTHFDNFDIDEAANDVARSIVASDAEFEGRMKFLTRDIMEVKEQLGEYDCI  206 (286)
Q Consensus       127 ~~~~~~~VL~IG~G~lp~tai~lA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~g~l~~~i~f~~~D~~~~~~~l~~fD~V  206 (286)
                      .....++|||||||+ |..++.+++ .+|+.+++++|+ |++++.|++.+...| +.++++|+.+|..+  ....+||+|
T Consensus        77 d~~~~~~VLDvGcG~-G~~~~~la~-~~p~~~~~~~D~-~~~~~~a~~~~~~~~-~~~rv~~~~~D~~~--~~~~~~D~v  150 (253)
T d1tw3a2          77 DWTNVRHVLDVGGGK-GGFAAAIAR-RAPHVSATVLEM-AGTVDTARSYLKDEG-LSDRVDVVEGDFFE--PLPRKADAI  150 (253)
T ss_dssp             CCTTCSEEEEETCTT-SHHHHHHHH-HCTTCEEEEEEC-TTHHHHHHHHHHHTT-CTTTEEEEECCTTS--CCSSCEEEE
T ss_pred             CCccCCEEEEeCCCC-CHHHHHHHH-hcceeEEEEccC-HHHHHHHHHHHHHhh-cccchhhccccchh--hcccchhhe
Confidence            446778999999996 667778887 489999999998 789999999999999 78999999999855  223579999


Q ss_pred             ehhhhc-cCChhHHHHHHHHHHhhccCCcEEEEee
Q 042119          207 FLAALV-GMSKEEKLTILGHIRKYMKDGGILLVRS  240 (286)
Q Consensus       207 ~~aalv-g~~~~~k~~vl~~l~~~l~pgg~lv~r~  240 (286)
                      ++...+ .++.++..++|+++++.|||||+|++.+
T Consensus       151 ~~~~vlh~~~d~~~~~~L~~~~~~LkPGG~l~i~e  185 (253)
T d1tw3a2         151 ILSFVLLNWPDHDAVRILTRCAEALEPGGRILIHE  185 (253)
T ss_dssp             EEESCGGGSCHHHHHHHHHHHHHTEEEEEEEEEEE
T ss_pred             eeccccccCCchhhHHHHHHHHHhcCCCcEEEEEe
Confidence            876554 5666777899999999999999998865

>d2avna1 c.66.1.41 (A:1-246) Hypothetical methyltransferase TM1389 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: UbiE/COQ5-like
domain: Hypothetical methyltransferase TM1389
species: Thermotoga maritima [TaxId: 2336]

Probab=99.57  E-value=2.1e-15  Score=129.80  Aligned_cols=100  Identities=16%  Similarity=0.255  Sum_probs=80.4

Q ss_pred             CCCCCEEEEeccCCChhhHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEccccchhhcCCCcceee
Q 042119          128 VVQPKKVAFVGSGPMPLTSIIMAKHHLTSTHFDNFDIDEAANDVARSIVASDAEFEGRMKFLTRDIMEVKEQLGEYDCIF  207 (286)
Q Consensus       128 ~~~~~~VL~IG~G~lp~tai~lA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~g~l~~~i~f~~~D~~~~~~~l~~fD~V~  207 (286)
                      ..++.+|||||||+ |..+..+++   .|++|+|+|+|+++++.|++.    + .   -.++++|+.+++.+.+.||+|+
T Consensus        40 ~~~~~~vLDiGcG~-G~~~~~l~~---~~~~v~giD~s~~~l~~a~~~----~-~---~~~~~~~~~~l~~~~~~fD~ii  107 (246)
T d2avna1          40 LKNPCRVLDLGGGT-GKWSLFLQE---RGFEVVLVDPSKEMLEVAREK----G-V---KNVVEAKAEDLPFPSGAFEAVL  107 (246)
T ss_dssp             CCSCCEEEEETCTT-CHHHHHHHT---TTCEEEEEESCHHHHHHHHHH----T-C---SCEEECCTTSCCSCTTCEEEEE
T ss_pred             cCCCCEEEEECCCC-chhcccccc---cceEEEEeecccccccccccc----c-c---ccccccccccccccccccccee
Confidence            35778999999996 777788988   689999999999999999975    3 1   2377899999887667899988


Q ss_pred             hh-hhccCChhHHHHHHHHHHhhccCCcEEEEee
Q 042119          208 LA-ALVGMSKEEKLTILGHIRKYMKDGGILLVRS  240 (286)
Q Consensus       208 ~a-alvg~~~~~k~~vl~~l~~~l~pgg~lv~r~  240 (286)
                      .. ...++ .+++.++|+++.+.|||||++++..
T Consensus       108 ~~~~~~~~-~~d~~~~l~~i~r~Lk~gG~~ii~~  140 (246)
T d2avna1         108 ALGDVLSY-VENKDKAFSEIRRVLVPDGLLIATV  140 (246)
T ss_dssp             ECSSHHHH-CSCHHHHHHHHHHHEEEEEEEEEEE
T ss_pred             eecchhhh-hhhHHHHHHHHHhhcCcCcEEEEEE
Confidence            53 33221 2466789999999999999999854

>d1susa1 c.66.1.1 (A:21-247) Caffeoyl-CoA O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: COMT-like
domain: Caffeoyl-CoA O-methyltransferase
species: Alfalfa (Medicago sativa) [TaxId: 3879]

Probab=99.57  E-value=3.2e-15  Score=130.93  Aligned_cols=107  Identities=16%  Similarity=0.276  Sum_probs=95.7

Q ss_pred             CCCCEEEEeccCCChhhHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEccccchhhcC-------C
Q 042119          129 VQPKKVAFVGSGPMPLTSIIMAKHHLTSTHFDNFDIDEAANDVARSIVASDAEFEGRMKFLTRDIMEVKEQL-------G  201 (286)
Q Consensus       129 ~~~~~VL~IG~G~lp~tai~lA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~g~l~~~i~f~~~D~~~~~~~l-------~  201 (286)
                      ..+++||+||+| .|+|+++||+...++++|+++|++++..+.|++.+++.| +.++|++++||+.+....+       +
T Consensus        58 ~~~k~iLEiGT~-~GyStl~la~al~~~g~v~tie~~~~~~~~A~~~~~~~g-~~~~i~~~~g~a~~~L~~l~~~~~~~~  135 (227)
T d1susa1          58 INAKNTMEIGVY-TGYSLLATALAIPEDGKILAMDINKENYELGLPVIKKAG-VDHKIDFREGPALPVLDEMIKDEKNHG  135 (227)
T ss_dssp             HTCCEEEEECCG-GGHHHHHHHHHSCTTCEEEEEESCCHHHHHHHHHHHHTT-CGGGEEEEESCHHHHHHHHHHCGGGTT
T ss_pred             cCCCcEEEecch-hhhhHHHHHhhCCCCcEEEEEeccchhHHHHHHHHHHhc-cccceeeeehHHHHHHHHHHhccccCC
Confidence            468999999999 799999999865568999999999999999999999999 7999999999998776532       4


Q ss_pred             CcceeehhhhccCChhHHHHHHHHHHhhccCCcEEEEeec
Q 042119          202 EYDCIFLAALVGMSKEEKLTILGHIRKYMKDGGILLVRSA  241 (286)
Q Consensus       202 ~fD~V~~aalvg~~~~~k~~vl~~l~~~l~pgg~lv~r~~  241 (286)
                      .||+||+++-.    +.+...++.+.+.|+|||++++.+.
T Consensus       136 ~fD~iFiDa~k----~~y~~~~e~~~~ll~~gGiii~DNv  171 (227)
T d1susa1         136 SYDFIFVDADK----DNYLNYHKRLIDLVKVGGVIGYDNT  171 (227)
T ss_dssp             CBSEEEECSCS----TTHHHHHHHHHHHBCTTCCEEEETT
T ss_pred             ceeEEEeccch----hhhHHHHHHHHhhcCCCcEEEEccC
Confidence            69999999765    6778899999999999999999985

>d1dl5a1 c.66.1.7 (A:1-213) Protein-L-isoaspartyl O-methyltransferase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Protein-L-isoaspartyl O-methyltransferase
domain: Protein-L-isoaspartyl O-methyltransferase
species: Thermotoga maritima [TaxId: 2336]

Probab=99.56  E-value=4.3e-15  Score=128.47  Aligned_cols=108  Identities=17%  Similarity=0.205  Sum_probs=88.5

Q ss_pred             HHHhcCCCCCCEEEEeccCCChhhHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEccccchhhcCC
Q 042119          122 ILSENGVVQPKKVAFVGSGPMPLTSIIMAKHHLTSTHFDNFDIDEAANDVARSIVASDAEFEGRMKFLTRDIMEVKEQLG  201 (286)
Q Consensus       122 ~l~~~~~~~~~~VL~IG~G~lp~tai~lA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~g~l~~~i~f~~~D~~~~~~~l~  201 (286)
                      .+....++++++||+||||+ |+.+..+|+...++++|+++|+++++++.|++.++..+.  +++.++++|+.+.....+
T Consensus        67 ~l~~l~l~~g~~VLdiG~Gt-G~~s~~la~~~~~~g~V~~id~~~~~~~~a~~~~~~~~~--~n~~~~~~d~~~~~~~~~  143 (213)
T d1dl5a1          67 FMEWVGLDKGMRVLEIGGGT-GYNAAVMSRVVGEKGLVVSVEYSRKICEIAKRNVERLGI--ENVIFVCGDGYYGVPEFS  143 (213)
T ss_dssp             HHHHTTCCTTCEEEEECCTT-SHHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHTTC--CSEEEEESCGGGCCGGGC
T ss_pred             HHHhhhccccceEEEecCcc-chhHHHHHHHhCCCCcEEEeecchhhHHHhhhhHhhhcc--cccccccCchHHcccccc
Confidence            34455789999999999996 777788988556788999999999999999999999984  789999999987666556


Q ss_pred             CcceeehhhhccCChhHHHHHHHHHHhhccCCcEEEEe
Q 042119          202 EYDCIFLAALVGMSKEEKLTILGHIRKYMKDGGILLVR  239 (286)
Q Consensus       202 ~fD~V~~aalvg~~~~~k~~vl~~l~~~l~pgg~lv~r  239 (286)
                      .||+|++.+.+..       +.+.+.+.|||||++++-
T Consensus       144 ~fD~I~~~~~~~~-------~p~~l~~~LkpGG~lv~p  174 (213)
T d1dl5a1         144 PYDVIFVTVGVDE-------VPETWFTQLKEGGRVIVP  174 (213)
T ss_dssp             CEEEEEECSBBSC-------CCHHHHHHEEEEEEEEEE
T ss_pred             chhhhhhhccHHH-------hHHHHHHhcCCCcEEEEE
Confidence            8999998765521       223567889999999884

>d1i9ga_ c.66.1.13 (A:) Probable methyltransferase Rv2118c {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: tRNA(1-methyladenosine) methyltransferase-like
domain: Probable methyltransferase Rv2118c
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.56  E-value=4.4e-15  Score=132.85  Aligned_cols=155  Identities=17%  Similarity=0.254  Sum_probs=114.6

Q ss_pred             HHhcCCCCCCEEEEeccCCChhhHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcC-CCCCCeEEEEccccchhhcCC
Q 042119          123 LSENGVVQPKKVAFVGSGPMPLTSIIMAKHHLTSTHFDNFDIDEAANDVARSIVASDA-EFEGRMKFLTRDIMEVKEQLG  201 (286)
Q Consensus       123 l~~~~~~~~~~VL~IG~G~lp~tai~lA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~g-~l~~~i~f~~~D~~~~~~~l~  201 (286)
                      +....+.++++|||+|||+ |..++.||+...|+++|+++|+++++++.|+++++..+ ...++++|.++|+.+...+.+
T Consensus        89 i~~l~i~PG~~VLE~G~Gs-G~lt~~La~~vgp~G~V~~~d~~~~~~~~Ar~n~~~~~~~~~~nv~~~~~d~~~~~~~~~  167 (264)
T d1i9ga_          89 VHEGDIFPGARVLEAGAGS-GALTLSLLRAVGPAGQVISYEQRADHAEHARRNVSGCYGQPPDNWRLVVSDLADSELPDG  167 (264)
T ss_dssp             HHHTTCCTTCEEEEECCTT-SHHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHHHTSCCTTEEEECSCGGGCCCCTT
T ss_pred             HHHhCCCCCCEEEecCcCC-cHHHHHHHHhhCCCcEEEEecCCHHHHHHHHHhhhhhccCCCceEEEEecccccccccCC
Confidence            3345789999999999997 55567888866789999999999999999999998752 145799999999988666667


Q ss_pred             CcceeehhhhccCChhHHHHHHHHHHhhccCCcEEEEeec---------Cccee-eecccCCcccc--cCcEEE-EEecC
Q 042119          202 EYDCIFLAALVGMSKEEKLTILGHIRKYMKDGGILLVRSA---------KGARA-FLYPVVVEHDL--LDFEVL-SAVHP  268 (286)
Q Consensus       202 ~fD~V~~aalvg~~~~~k~~vl~~l~~~l~pgg~lv~r~~---------~g~r~-~lyp~v~~~~l--~gf~~~-~~~~P  268 (286)
                      .||.||++.      ++..++++++.+.|||||.+++-.+         ..++. ..|-.+..-++  +.|++- ..+||
T Consensus       168 ~fDaV~ldl------p~P~~~l~~~~~~LkpGG~lv~~~P~i~Qv~~~~~~l~~~~~f~~i~~~E~l~R~~~v~~~~~RP  241 (264)
T d1i9ga_         168 SVDRAVLDM------LAPWEVLDAVSRLLVAGGVLMVYVATVTQLSRIVEALRAKQCWTEPRAWETLQRGWNVVGLAVRP  241 (264)
T ss_dssp             CEEEEEEES------SCGGGGHHHHHHHEEEEEEEEEEESSHHHHHHHHHHHHHHSSBCCCEEECCCCCCEEEETTEEEE
T ss_pred             CcceEEEec------CCHHHHHHHHHhccCCCCEEEEEeCccChHHHHHHHHHHcCCeecceEEEEEEEEEEeccCeeCC
Confidence            899999752      4556899999999999999998542         12221 11111111122  578776 66788


Q ss_pred             ccccee-e--eEEEee-cCC
Q 042119          269 NDDVIN-S--VVLVRN-SQG  284 (286)
Q Consensus       269 ~~~vin-s--vi~~r~-~~~  284 (286)
                      ....+. |  ++|||| +.|
T Consensus       242 ~~~~vgHTgfl~~ark~~~~  261 (264)
T d1i9ga_         242 QHSMRGHTAFLVATRRLAPG  261 (264)
T ss_dssp             CSCCCCCSCEEEEEEBCCTT
T ss_pred             CCCCccchHHHhhhhhccCC
Confidence            877553 3  788998 444

>d2nxca1 c.66.1.39 (A:1-254) PrmA-like protein TTHA0656 (TT0836) {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Ribosomal protein L11 methyltransferase PrmA
domain: PrmA-like protein TTHA0656 (TT0836)
species: Thermus thermophilus [TaxId: 274]

Probab=99.55  E-value=1.1e-14  Score=129.52  Aligned_cols=115  Identities=19%  Similarity=0.257  Sum_probs=89.9

Q ss_pred             hhhhHHHHHHHHhcCCCCCCEEEEeccCCChhhHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEcc
Q 042119          113 VKLSKLEYTILSENGVVQPKKVAFVGSGPMPLTSIIMAKHHLTSTHFDNFDIDEAANDVARSIVASDAEFEGRMKFLTRD  192 (286)
Q Consensus       113 ~~l~~~E~~~l~~~~~~~~~~VL~IG~G~lp~tai~lA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~g~l~~~i~f~~~D  192 (286)
                      ++-+++=+..+.+. ..++++|||+|||+ |..++.+++   .|++|+|+|+|+.|++.|+++++..| +  +++|.++|
T Consensus       104 H~TT~l~l~~l~~~-~~~g~~VLDiGcGs-G~l~i~aa~---~g~~V~gvDis~~av~~A~~na~~n~-~--~~~~~~~d  175 (254)
T d2nxca1         104 HETTRLALKALARH-LRPGDKVLDLGTGS-GVLAIAAEK---LGGKALGVDIDPMVLPQAEANAKRNG-V--RPRFLEGS  175 (254)
T ss_dssp             SHHHHHHHHHHHHH-CCTTCEEEEETCTT-SHHHHHHHH---TTCEEEEEESCGGGHHHHHHHHHHTT-C--CCEEEESC
T ss_pred             cchhhHHHHHHHhh-cCccCEEEEcccch-hHHHHHHHh---cCCEEEEEECChHHHHHHHHHHHHcC-C--ceeEEecc
Confidence            33344444444443 47889999999997 566788887   78999999999999999999999998 4  56899999


Q ss_pred             ccchhhcCCCcceeehhhhccCChhHHHHHHHHHHhhccCCcEEEEee
Q 042119          193 IMEVKEQLGEYDCIFLAALVGMSKEEKLTILGHIRKYMKDGGILLVRS  240 (286)
Q Consensus       193 ~~~~~~~l~~fD~V~~aalvg~~~~~k~~vl~~l~~~l~pgg~lv~r~  240 (286)
                      +.+.. +.+.||+|+...+    .....++++++.++|||||++++..
T Consensus       176 ~~~~~-~~~~fD~V~ani~----~~~l~~l~~~~~~~LkpGG~lilSg  218 (254)
T d2nxca1         176 LEAAL-PFGPFDLLVANLY----AELHAALAPRYREALVPGGRALLTG  218 (254)
T ss_dssp             HHHHG-GGCCEEEEEEECC----HHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred             ccccc-cccccchhhhccc----cccHHHHHHHHHHhcCCCcEEEEEe
Confidence            87643 3368999985422    3566789999999999999999853

>d1p91a_ c.66.1.33 (A:) rRNA methyltransferase RlmA {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: rRNA methyltransferase RlmA
domain: rRNA methyltransferase RlmA
species: Escherichia coli [TaxId: 562]

Probab=99.55  E-value=1.9e-14  Score=128.11  Aligned_cols=132  Identities=17%  Similarity=0.145  Sum_probs=96.3

Q ss_pred             hhHHHHHHHHhcCCCCCCEEEEeccCCChhhHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEcccc
Q 042119          115 LSKLEYTILSENGVVQPKKVAFVGSGPMPLTSIIMAKHHLTSTHFDNFDIDEAANDVARSIVASDAEFEGRMKFLTRDIM  194 (286)
Q Consensus       115 l~~~E~~~l~~~~~~~~~~VL~IG~G~lp~tai~lA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~g~l~~~i~f~~~D~~  194 (286)
                      +.+.-...+....+.++.+|||||||+ |..+..+++ ..++++++|+|+|+.+++.|++.   .    .+++|.++|+.
T Consensus        69 l~~~~~~~l~~~~~~~~~~iLDiGcG~-G~~~~~l~~-~~~~~~~~giD~s~~~~~~a~~~---~----~~~~~~~~d~~  139 (268)
T d1p91a_          69 LRDAIVAQLRERLDDKATAVLDIGCGE-GYYTHAFAD-ALPEITTFGLDVSKVAIKAAAKR---Y----PQVTFCVASSH  139 (268)
T ss_dssp             HHHHHHHHHHHHSCTTCCEEEEETCTT-STTHHHHHH-TCTTSEEEEEESCHHHHHHHHHH---C----TTSEEEECCTT
T ss_pred             HHHHHHHHHHHhcCCCCCEEEEeCCCC-cHHHHHHHH-HCCCCEEEEecchHhhhhhhhcc---c----ccccceeeehh
Confidence            344434444455567889999999997 555566777 47899999999999999999875   2    47999999999


Q ss_pred             chhhcCCCcceeehhhhccCChhHHHHHHHHHHhhccCCcEEEEeec-----CcceeeecccCCcc-----cccCcEEE
Q 042119          195 EVKEQLGEYDCIFLAALVGMSKEEKLTILGHIRKYMKDGGILLVRSA-----KGARAFLYPVVVEH-----DLLDFEVL  263 (286)
Q Consensus       195 ~~~~~l~~fD~V~~aalvg~~~~~k~~vl~~l~~~l~pgg~lv~r~~-----~g~r~~lyp~v~~~-----~l~gf~~~  263 (286)
                      +++.+.+.||+|+......        .+++++|.|||||.+++...     +.++..+|+.....     .+.||+..
T Consensus       140 ~l~~~~~sfD~v~~~~~~~--------~~~e~~rvLkpgG~l~~~~p~~~~l~el~~~~~~~~~~~~~~~~~~~~f~~~  210 (268)
T d1p91a_         140 RLPFSDTSMDAIIRIYAPC--------KAEELARVVKPGGWVITATPGPRHLMELKGLIYNEVHLHAPHAEQLEGFTLQ  210 (268)
T ss_dssp             SCSBCTTCEEEEEEESCCC--------CHHHHHHHEEEEEEEEEEEECTTTTHHHHTTTCSSCCCCCCCCCCCTTEEEE
T ss_pred             hccCCCCCEEEEeecCCHH--------HHHHHHHHhCCCcEEEEEeeCCcchHHHHHHhhccccccccchhhccCCcee
Confidence            9888778899998432211        25689999999999999763     23445566654322     33577654

>d1ri5a_ c.66.1.34 (A:) mRNA cap (Guanine N-7) methyltransferase {Fungus (Encephalitozoon cuniculi) [TaxId: 6035]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: mRNA cap (Guanine N-7) methyltransferase
domain: mRNA cap (Guanine N-7) methyltransferase
species: Fungus (Encephalitozoon cuniculi) [TaxId: 6035]

Probab=99.54  E-value=1.2e-14  Score=127.62  Aligned_cols=109  Identities=17%  Similarity=0.146  Sum_probs=85.6

Q ss_pred             CCCCCEEEEeccCCChhhHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEccccchhhcCC-Cccee
Q 042119          128 VVQPKKVAFVGSGPMPLTSIIMAKHHLTSTHFDNFDIDEAANDVARSIVASDAEFEGRMKFLTRDIMEVKEQLG-EYDCI  206 (286)
Q Consensus       128 ~~~~~~VL~IG~G~lp~tai~lA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~g~l~~~i~f~~~D~~~~~~~l~-~fD~V  206 (286)
                      .+++++|||||||+++. +..+++.  ...+|+|||+|+++++.|++.....+ ...++.|.++|+...+.+.+ .||+|
T Consensus        22 ~~~~~~VLDlGCG~G~~-~~~~~~~--~~~~v~GiD~S~~~l~~A~~r~~~~~-~~~~v~f~~~D~~~~~~~~~~~fD~V   97 (252)
T d1ri5a_          22 TKRGDSVLDLGCGKGGD-LLKYERA--GIGEYYGVDIAEVSINDARVRARNMK-RRFKVFFRAQDSYGRHMDLGKEFDVI   97 (252)
T ss_dssp             CCTTCEEEEETCTTTTT-HHHHHHH--TCSEEEEEESCHHHHHHHHHHHHTSC-CSSEEEEEESCTTTSCCCCSSCEEEE
T ss_pred             CCCcCEEEEecccCcHH-HHHHHHc--CCCeEEEecCCHHHHHHHHHHHHhcC-CCcceEEEEcchhhhcccccccceEE
Confidence            46789999999998555 5666762  44689999999999999999998888 56789999999976554433 69999


Q ss_pred             ehhhhc-c--CChhHHHHHHHHHHhhccCCcEEEEee
Q 042119          207 FLAALV-G--MSKEEKLTILGHIRKYMKDGGILLVRS  240 (286)
Q Consensus       207 ~~aalv-g--~~~~~k~~vl~~l~~~l~pgg~lv~r~  240 (286)
                      +....+ .  .+.+....++.++.+.|+|||++++..
T Consensus        98 ~~~~~l~~~~~~~~~~~~~l~~i~~~Lk~gG~~i~~~  134 (252)
T d1ri5a_          98 SSQFSFHYAFSTSESLDIAQRNIARHLRPGGYFIMTV  134 (252)
T ss_dssp             EEESCGGGGGSSHHHHHHHHHHHHHTEEEEEEEEEEE
T ss_pred             EEcceeeecCCCHHHHHHHHHHHhceeCCCCEEEEEe
Confidence            754322 2  244556789999999999999998854

>d1zx0a1 c.66.1.16 (A:8-236) Guanidinoacetate methyltransferase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Guanidinoacetate methyltransferase
domain: Guanidinoacetate methyltransferase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.53  E-value=8.3e-15  Score=127.33  Aligned_cols=109  Identities=16%  Similarity=0.158  Sum_probs=88.2

Q ss_pred             cCCCCCCEEEEeccCCChhhHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEccccchhhcC--CCc
Q 042119          126 NGVVQPKKVAFVGSGPMPLTSIIMAKHHLTSTHFDNFDIDEAANDVARSIVASDAEFEGRMKFLTRDIMEVKEQL--GEY  203 (286)
Q Consensus       126 ~~~~~~~~VL~IG~G~lp~tai~lA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~g~l~~~i~f~~~D~~~~~~~l--~~f  203 (286)
                      ....++++||+||||+ |.++..+|+  ..+.+|++||+||++++.|++..+..+   .++.++.+|+.+....+  +.|
T Consensus        49 ~~~~~g~~VLdIGcG~-G~~a~~~a~--~~~~~v~~id~s~~~~~~a~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~f  122 (229)
T d1zx0a1          49 AASSKGGRVLEVGFGM-AIAASKVQE--APIDEHWIIECNDGVFQRLRDWAPRQT---HKVIPLKGLWEDVAPTLPDGHF  122 (229)
T ss_dssp             HHTTTCEEEEEECCTT-SHHHHHHHT--SCEEEEEEEECCHHHHHHHHHHGGGCS---SEEEEEESCHHHHGGGSCTTCE
T ss_pred             hhccCCCeEEEeeccc-hHHHHHHHH--cCCCeEEEeCCCHHHHHHHHHHhhhcc---cccccccccccccccccccccc
Confidence            3446789999999995 788899998  356899999999999999999987766   57899999987765544  479


Q ss_pred             ceeehhhh----ccCChhHHHHHHHHHHhhccCCcEEEEee
Q 042119          204 DCIFLAAL----VGMSKEEKLTILGHIRKYMKDGGILLVRS  240 (286)
Q Consensus       204 D~V~~aal----vg~~~~~k~~vl~~l~~~l~pgg~lv~r~  240 (286)
                      |.|+++..    ...+..+...+++++.|+|||||++++-+
T Consensus       123 D~i~fD~~~~~~~~~~~~~~~~~~~~~~r~LkpGG~~~~~~  163 (229)
T d1zx0a1         123 DGILYDTYPLSEETWHTHQFNFIKNHAFRLLKPGGVLTYCN  163 (229)
T ss_dssp             EEEEECCCCCBGGGTTTHHHHHHHHTHHHHEEEEEEEEECC
T ss_pred             cceeecccccccccccccCHHHHHHHHHHHcCCCcEEEEEe
Confidence            99986542    23345678889999999999999998854

>d1kpia_ c.66.1.18 (A:) CmaA2 {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Mycolic acid cyclopropane synthase
domain: CmaA2
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.53  E-value=5.7e-14  Score=127.04  Aligned_cols=112  Identities=13%  Similarity=0.046  Sum_probs=91.1

Q ss_pred             HHHhcCCCCCCEEEEeccCCChhhHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEccccchhhcCC
Q 042119          122 ILSENGVVQPKKVAFVGSGPMPLTSIIMAKHHLTSTHFDNFDIDEAANDVARSIVASDAEFEGRMKFLTRDIMEVKEQLG  201 (286)
Q Consensus       122 ~l~~~~~~~~~~VL~IG~G~lp~tai~lA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~g~l~~~i~f~~~D~~~~~~~l~  201 (286)
                      .+.+.+++++++|||||||- |-.++.+|++  .|++|||||+|++.++.|++.++..| +.+++++...|..   ...+
T Consensus        53 ~~~~l~l~~G~~VLDiGCG~-G~~~~~~a~~--~g~~v~git~s~~q~~~a~~~~~~~~-l~~~v~~~~~d~~---~~~~  125 (291)
T d1kpia_          53 ALDKLNLEPGMTLLDIGCGW-GSTMRHAVAE--YDVNVIGLTLSENQYAHDKAMFDEVD-SPRRKEVRIQGWE---EFDE  125 (291)
T ss_dssp             HHHTTCCCTTCEEEEETCTT-SHHHHHHHHH--HCCEEEEEESCHHHHHHHHHHHHHSC-CSSCEEEEECCGG---GCCC
T ss_pred             HHHhcCCCCCCEEEEecCcc-hHHHHHHHHh--cCcceeeccchHHHHHHHHHHHHhhc-cchhhhhhhhccc---cccc
Confidence            55677889999999999995 5567788874  68999999999999999999999999 7999999999963   2336


Q ss_pred             Ccceeehhhhc-cCC-------hhHHHHHHHHHHhhccCCcEEEEee
Q 042119          202 EYDCIFLAALV-GMS-------KEEKLTILGHIRKYMKDGGILLVRS  240 (286)
Q Consensus       202 ~fD~V~~aalv-g~~-------~~~k~~vl~~l~~~l~pgg~lv~r~  240 (286)
                      .||.|+.-..+ ++.       .+.+..+++.+.+.|||||++++.+
T Consensus       126 ~fD~i~sie~~eH~~~~~~~~~~~~~~~~f~~i~~~LkpgG~~~l~~  172 (291)
T d1kpia_         126 PVDRIVSLGAFEHFADGAGDAGFERYDTFFKKFYNLTPDDGRMLLHT  172 (291)
T ss_dssp             CCSEEEEESCGGGTTCCSSCCSTTHHHHHHHHHHHTSCTTCEEEEEE
T ss_pred             ccceEeechhHHhcchhhhhhHHHHHHHHHHHHHHhCCCCCceEEEE
Confidence            79988733222 322       1457899999999999999999864

>d1dusa_ c.66.1.4 (A:) Hypothetical protein MJ0882 {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Hypothetical protein MJ0882
domain: Hypothetical protein MJ0882
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=99.53  E-value=4.5e-14  Score=119.50  Aligned_cols=109  Identities=18%  Similarity=0.224  Sum_probs=86.8

Q ss_pred             hcCCCCCCEEEEeccCCChhhHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCC-CCeEEEEccccchhhcCCCc
Q 042119          125 ENGVVQPKKVAFVGSGPMPLTSIIMAKHHLTSTHFDNFDIDEAANDVARSIVASDAEFE-GRMKFLTRDIMEVKEQLGEY  203 (286)
Q Consensus       125 ~~~~~~~~~VL~IG~G~lp~tai~lA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~g~l~-~~i~f~~~D~~~~~~~l~~f  203 (286)
                      ...+.++++|||||||+ |..++.+|+   .+.+|+++|+|+.+++.|+++++..+ +. .++++..+|..+.. ..+.|
T Consensus        47 ~l~~~~~~~VLDiGcG~-G~~~~~la~---~~~~v~~iD~s~~~i~~a~~n~~~~~-l~~~~i~~~~~d~~~~~-~~~~f  120 (194)
T d1dusa_          47 NVVVDKDDDILDLGCGY-GVIGIALAD---EVKSTTMADINRRAIKLAKENIKLNN-LDNYDIRVVHSDLYENV-KDRKY  120 (194)
T ss_dssp             HCCCCTTCEEEEETCTT-SHHHHHHGG---GSSEEEEEESCHHHHHHHHHHHHHTT-CTTSCEEEEECSTTTTC-TTSCE
T ss_pred             hCCcCCCCeEEEEeecC-ChhHHHHHh---hccccceeeeccccchhHHHHHHHhC-CccceEEEEEcchhhhh-ccCCc
Confidence            45678899999999996 566788887   56799999999999999999999888 44 47999999987633 33579


Q ss_pred             ceeehhhhccCChhHHHHHHHHHHhhccCCcEEEEe
Q 042119          204 DCIFLAALVGMSKEEKLTILGHIRKYMKDGGILLVR  239 (286)
Q Consensus       204 D~V~~aalvg~~~~~k~~vl~~l~~~l~pgg~lv~r  239 (286)
                      |+|+.........+.-.++++++.+.|+|||.+++.
T Consensus       121 D~Ii~~~p~~~~~~~~~~~l~~~~~~LkpgG~l~i~  156 (194)
T d1dusa_         121 NKIITNPPIRAGKEVLHRIIEEGKELLKDNGEIWVV  156 (194)
T ss_dssp             EEEEECCCSTTCHHHHHHHHHHHHHHEEEEEEEEEE
T ss_pred             eEEEEcccEEecchhhhhHHHHHHHhcCcCcEEEEE
Confidence            999975433222333467999999999999988764

>d2cl5a1 c.66.1.1 (A:3-216) Catechol O-methyltransferase, COMT {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: COMT-like
domain: Catechol O-methyltransferase, COMT
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.52  E-value=6.7e-15  Score=127.58  Aligned_cols=108  Identities=14%  Similarity=0.210  Sum_probs=89.0

Q ss_pred             CCCCEEEEeccCCChhhHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEccccchhhc------CCC
Q 042119          129 VQPKKVAFVGSGPMPLTSIIMAKHHLTSTHFDNFDIDEAANDVARSIVASDAEFEGRMKFLTRDIMEVKEQ------LGE  202 (286)
Q Consensus       129 ~~~~~VL~IG~G~lp~tai~lA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~g~l~~~i~f~~~D~~~~~~~------l~~  202 (286)
                      .+|++||+|||| .|+|+++||++..++++|+++|+++++.+.|++.++..| ++++|+++.||+.+....      ...
T Consensus        55 ~kpk~ILEiGt~-~G~Sti~la~al~~~g~v~sid~~~~~~~~a~~~~~~~g-l~~~i~l~~Gd~~e~l~~l~~~~~~~~  132 (214)
T d2cl5a1          55 YSPSLVLELGAY-CGYSAVRMARLLQPGARLLTMEMNPDYAAITQQMLNFAG-LQDKVTILNGASQDLIPQLKKKYDVDT  132 (214)
T ss_dssp             HCCSEEEEECCT-TSHHHHHHHTTCCTTCEEEEEESCHHHHHHHHHHHHHHT-CGGGEEEEESCHHHHGGGHHHHSCCCC
T ss_pred             hCCCEEEEEccC-chhHHHHHHHhCCCccEEEEEeccHHHHHHHHHHHHHcC-CCccceeeeccccccccchhhcccccc
Confidence            578999999999 599999999854568999999999999999999999999 899999999999876432      346


Q ss_pred             cceeehhhhccCChhHHHHHHHHHHhhccCCcEEEEee
Q 042119          203 YDCIFLAALVGMSKEEKLTILGHIRKYMKDGGILLVRS  240 (286)
Q Consensus       203 fD~V~~aalvg~~~~~k~~vl~~l~~~l~pgg~lv~r~  240 (286)
                      ||+||+++....  ......+.+..++|+|||+|++.+
T Consensus       133 ~D~ifiD~~~~~--~~~~~~l~~~~~lLkpGGvIv~Dd  168 (214)
T d2cl5a1         133 LDMVFLDHWKDR--YLPDTLLLEKCGLLRKGTVLLADN  168 (214)
T ss_dssp             EEEEEECSCGGG--HHHHHHHHHHTTCEEEEEEEEESC
T ss_pred             cceeeecccccc--cccHHHHHHHhCccCCCcEEEEeC
Confidence            999999865311  112234667778999999999876

>d1nt2a_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Fibrillarin homologue
domain: Fibrillarin homologue
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=99.52  E-value=4.2e-14  Score=121.98  Aligned_cols=106  Identities=12%  Similarity=0.130  Sum_probs=83.8

Q ss_pred             cCCCCCCEEEEeccCCChhhHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEccccchhhcCCC---
Q 042119          126 NGVVQPKKVAFVGSGPMPLTSIIMAKHHLTSTHFDNFDIDEAANDVARSIVASDAEFEGRMKFLTRDIMEVKEQLGE---  202 (286)
Q Consensus       126 ~~~~~~~~VL~IG~G~lp~tai~lA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~g~l~~~i~f~~~D~~~~~~~l~~---  202 (286)
                      ..++++++||+||||+ |.++..+|+ ..+.++|+|+|++|++++.|++.+++.+    ++.++++|+.+.......   
T Consensus        52 l~lkpg~~VLDlGcG~-G~~~~~la~-~v~~g~V~gvDis~~~i~~a~~~a~~~~----ni~~i~~d~~~~~~~~~~~~~  125 (209)
T d1nt2a_          52 LKLRGDERVLYLGAAS-GTTVSHLAD-IVDEGIIYAVEYSAKPFEKLLELVRERN----NIIPLLFDASKPWKYSGIVEK  125 (209)
T ss_dssp             CCCCSSCEEEEETCTT-SHHHHHHHH-HTTTSEEEEECCCHHHHHHHHHHHHHCS----SEEEECSCTTCGGGTTTTCCC
T ss_pred             CCCCCCCEEEEeCCcC-CHHHHHHHH-hccCCeEEEEeCCHHHHHHHHHHhhccC----CceEEEeeccCccccccccce
Confidence            4579999999999997 667888888 4677899999999999999999988765    699999999875443333   


Q ss_pred             cceeehhhhccCChhHHHHHHHHHHhhccCCcEEEEee
Q 042119          203 YDCIFLAALVGMSKEEKLTILGHIRKYMKDGGILLVRS  240 (286)
Q Consensus       203 fD~V~~aalvg~~~~~k~~vl~~l~~~l~pgg~lv~r~  240 (286)
                      +|+||.. +.  ...++..++.++.+.|||||.+++-.
T Consensus       126 vd~v~~~-~~--~~~~~~~~l~~~~~~LkpgG~l~i~~  160 (209)
T d1nt2a_         126 VDLIYQD-IA--QKNQIEILKANAEFFLKEKGEVVIMV  160 (209)
T ss_dssp             EEEEEEC-CC--STTHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred             EEEEEec-cc--ChhhHHHHHHHHHHHhccCCeEEEEE
Confidence            4444432 21  22567789999999999999998754

>d1o54a_ c.66.1.13 (A:) Hypothetical protein TM0748 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: tRNA(1-methyladenosine) methyltransferase-like
domain: Hypothetical protein TM0748
species: Thermotoga maritima [TaxId: 2336]

Probab=99.51  E-value=1.4e-14  Score=129.52  Aligned_cols=110  Identities=18%  Similarity=0.205  Sum_probs=91.0

Q ss_pred             HHHhcCCCCCCEEEEeccCCChhhHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEccccchhhcCC
Q 042119          122 ILSENGVVQPKKVAFVGSGPMPLTSIIMAKHHLTSTHFDNFDIDEAANDVARSIVASDAEFEGRMKFLTRDIMEVKEQLG  201 (286)
Q Consensus       122 ~l~~~~~~~~~~VL~IG~G~lp~tai~lA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~g~l~~~i~f~~~D~~~~~~~l~  201 (286)
                      .+....+.++++|||+|||+ |..++.||+...++++|+++|+++++++.|++++++.| +.+++.+..+|+.+ ..+..
T Consensus        95 Ii~~l~i~pG~~VLDiG~Gs-G~lt~~lA~~~~~~G~V~~vD~~~~~~~~A~~~~~~~g-~~~~v~~~~~d~~~-~~~~~  171 (266)
T d1o54a_          95 IAMMLDVKEGDRIIDTGVGS-GAMCAVLARAVGSSGKVFAYEKREEFAKLAESNLTKWG-LIERVTIKVRDISE-GFDEK  171 (266)
T ss_dssp             HHHHTTCCTTCEEEEECCTT-SHHHHHHHHHTTTTCEEEEECCCHHHHHHHHHHHHHTT-CGGGEEEECCCGGG-CCSCC
T ss_pred             HHHhhCCCCCCEEEECCCCC-CHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhc-cccCcEEEeccccc-ccccc
Confidence            34456789999999999997 55567788855688999999999999999999999999 78899999999754 23345


Q ss_pred             CcceeehhhhccCChhHHHHHHHHHHhhccCCcEEEEee
Q 042119          202 EYDCIFLAALVGMSKEEKLTILGHIRKYMKDGGILLVRS  240 (286)
Q Consensus       202 ~fD~V~~aalvg~~~~~k~~vl~~l~~~l~pgg~lv~r~  240 (286)
                      .||.||.+.      ++..++++++.+.|||||++++-.
T Consensus       172 ~~D~V~~d~------p~p~~~l~~~~~~LKpGG~lv~~~  204 (266)
T d1o54a_         172 DVDALFLDV------PDPWNYIDKCWEALKGGGRFATVC  204 (266)
T ss_dssp             SEEEEEECC------SCGGGTHHHHHHHEEEEEEEEEEE
T ss_pred             ceeeeEecC------CCHHHHHHHHHhhcCCCCEEEEEe
Confidence            799988652      455679999999999999998743

>d1xtpa_ c.66.1.42 (A:) Hypothetical protein Lmaj004091aaa (LmjF30.0810) {Leishmania major [TaxId: 5664]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: AD-003 protein-like
domain: Hypothetical protein Lmaj004091aaa (LmjF30.0810)
species: Leishmania major [TaxId: 5664]

Probab=99.49  E-value=5.5e-14  Score=124.23  Aligned_cols=112  Identities=12%  Similarity=0.114  Sum_probs=87.4

Q ss_pred             HHHhcCCCCCCEEEEeccCCChhhHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEccccchhhcCC
Q 042119          122 ILSENGVVQPKKVAFVGSGPMPLTSIIMAKHHLTSTHFDNFDIDEAANDVARSIVASDAEFEGRMKFLTRDIMEVKEQLG  201 (286)
Q Consensus       122 ~l~~~~~~~~~~VL~IG~G~lp~tai~lA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~g~l~~~i~f~~~D~~~~~~~l~  201 (286)
                      .+.......+.+|||+|||++..| ..|++.  ...+|++||+++++++.|++.....    .+++|.++|+.+++...+
T Consensus        85 fl~~l~~~~~~~vLD~GcG~G~~t-~~ll~~--~~~~v~~vD~s~~~l~~a~~~~~~~----~~~~~~~~d~~~~~~~~~  157 (254)
T d1xtpa_          85 FIASLPGHGTSRALDCGAGIGRIT-KNLLTK--LYATTDLLEPVKHMLEEAKRELAGM----PVGKFILASMETATLPPN  157 (254)
T ss_dssp             HHHTSTTCCCSEEEEETCTTTHHH-HHTHHH--HCSEEEEEESCHHHHHHHHHHTTTS----SEEEEEESCGGGCCCCSS
T ss_pred             HHhhCCCCCCCeEEEecccCChhh-HHHHhh--cCceEEEEcCCHHHHHhhhcccccc----ccceeEEccccccccCCC
Confidence            344445577889999999975455 444442  3458999999999999999885433    468999999988776656


Q ss_pred             Ccceeehhhhc-cCChhHHHHHHHHHHhhccCCcEEEEee
Q 042119          202 EYDCIFLAALV-GMSKEEKLTILGHIRKYMKDGGILLVRS  240 (286)
Q Consensus       202 ~fD~V~~aalv-g~~~~~k~~vl~~l~~~l~pgg~lv~r~  240 (286)
                      .||+|+....+ .++.++..++|+++++.|+|||.+++.+
T Consensus       158 ~fD~I~~~~vl~hl~d~d~~~~l~~~~~~LkpgG~iii~e  197 (254)
T d1xtpa_         158 TYDLIVIQWTAIYLTDADFVKFFKHCQQALTPNGYIFFKE  197 (254)
T ss_dssp             CEEEEEEESCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred             ccceEEeeccccccchhhhHHHHHHHHHhcCCCcEEEEEe
Confidence            89999876544 4455667889999999999999999976

>d1qzza2 c.66.1.12 (A:102-357) Aclacinomycin-10-hydroxylase RdmB {Streptomyces purpurascens [TaxId: 1924]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Plant O-methyltransferase, C-terminal domain
domain: Aclacinomycin-10-hydroxylase RdmB
species: Streptomyces purpurascens [TaxId: 1924]

Probab=99.49  E-value=1.2e-13  Score=122.19  Aligned_cols=108  Identities=21%  Similarity=0.222  Sum_probs=90.5

Q ss_pred             CCCCCCEEEEeccCCChhhHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEccccchhhcCCCccee
Q 042119          127 GVVQPKKVAFVGSGPMPLTSIIMAKHHLTSTHFDNFDIDEAANDVARSIVASDAEFEGRMKFLTRDIMEVKEQLGEYDCI  206 (286)
Q Consensus       127 ~~~~~~~VL~IG~G~lp~tai~lA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~g~l~~~i~f~~~D~~~~~~~l~~fD~V  206 (286)
                      .....++|||||||+ |..+..+++ .+|+.+++++|+ |++++.|++.++..| +.++++++.+|..+ + ...+||+|
T Consensus        78 d~~~~~~vlDvG~G~-G~~~~~l~~-~~P~~~~~~~Dl-p~~~~~a~~~~~~~~-~~~ri~~~~~d~~~-~-~p~~~D~v  151 (256)
T d1qzza2          78 DWSAVRHVLDVGGGN-GGMLAAIAL-RAPHLRGTLVEL-AGPAERARRRFADAG-LADRVTVAEGDFFK-P-LPVTADVV  151 (256)
T ss_dssp             CCTTCCEEEEETCTT-SHHHHHHHH-HCTTCEEEEEEC-HHHHHHHHHHHHHTT-CTTTEEEEECCTTS-C-CSCCEEEE
T ss_pred             CCccCCEEEEECCCC-CHHHHHHHH-hhcCcEEEEecC-hHHHHHHHHHHhhcC-Ccceeeeeeeeccc-c-ccccchhh
Confidence            346778999999996 666777777 489999999998 889999999999999 78999999999854 2 22479999


Q ss_pred             ehhhhc-cCChhHHHHHHHHHHhhccCCcEEEEee
Q 042119          207 FLAALV-GMSKEEKLTILGHIRKYMKDGGILLVRS  240 (286)
Q Consensus       207 ~~aalv-g~~~~~k~~vl~~l~~~l~pgg~lv~r~  240 (286)
                      ++.... .++.++..++|+++++.|||||++++.+
T Consensus       152 ~~~~vLh~~~d~~~~~lL~~i~~~LkpgG~llI~d  186 (256)
T d1qzza2         152 LLSFVLLNWSDEDALTILRGCVRALEPGGRLLVLD  186 (256)
T ss_dssp             EEESCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred             hccccccccCcHHHHHHHHHHHhhcCCcceeEEEE
Confidence            877554 6677788899999999999999988865

>d1i1na_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Protein-L-isoaspartyl O-methyltransferase
domain: Protein-L-isoaspartyl O-methyltransferase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.49  E-value=4.4e-14  Score=123.09  Aligned_cols=104  Identities=20%  Similarity=0.196  Sum_probs=85.6

Q ss_pred             CCCCCCEEEEeccCCChhhHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCC----CCeEEEEccccchhhcCCC
Q 042119          127 GVVQPKKVAFVGSGPMPLTSIIMAKHHLTSTHFDNFDIDEAANDVARSIVASDAEFE----GRMKFLTRDIMEVKEQLGE  202 (286)
Q Consensus       127 ~~~~~~~VL~IG~G~lp~tai~lA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~g~l~----~~i~f~~~D~~~~~~~l~~  202 (286)
                      .++++.+||+||||+ |+.+.+||+...++++|+++|+++++++.|++++++.+ +.    .+++++++|+.+...+.+.
T Consensus        73 ~l~~g~~VLdiG~Gs-Gy~ta~la~l~~~~g~V~~ie~~~~l~~~a~~~l~~~~-~~~~~~~~~~~~~gD~~~~~~~~~~  150 (224)
T d1i1na_          73 QLHEGAKALDVGSGS-GILTACFARMVGCTGKVIGIDHIKELVDDSVNNVRKDD-PTLLSSGRVQLVVGDGRMGYAEEAP  150 (224)
T ss_dssp             TSCTTCEEEEETCTT-SHHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHHC-THHHHTSSEEEEESCGGGCCGGGCC
T ss_pred             ccCCCCeEEEecCCC-CHHHHHHHHHhCCCceEEEEcCCHHHHHHHHHhccccC-cccccccceEEEEeecccccchhhh
Confidence            458899999999996 77777888855678899999999999999999998876 32    5899999999876666678


Q ss_pred             cceeehhhhccCChhHHHHHHHHHHhhccCCcEEEEe
Q 042119          203 YDCIFLAALVGMSKEEKLTILGHIRKYMKDGGILLVR  239 (286)
Q Consensus       203 fD~V~~aalvg~~~~~k~~vl~~l~~~l~pgg~lv~r  239 (286)
                      ||.|++.+.+..       +.+.+.+.|||||++++-
T Consensus       151 fD~I~~~~~~~~-------ip~~l~~~LkpGG~LV~p  180 (224)
T d1i1na_         151 YDAIHVGAAAPV-------VPQALIDQLKPGGRLILP  180 (224)
T ss_dssp             EEEEEECSBBSS-------CCHHHHHTEEEEEEEEEE
T ss_pred             hhhhhhhcchhh-------cCHHHHhhcCCCcEEEEE
Confidence            999998765521       234578899999999884

>d1g8aa_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Fibrillarin homologue
domain: Fibrillarin homologue
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=99.48  E-value=8.7e-14  Score=121.64  Aligned_cols=161  Identities=16%  Similarity=0.161  Sum_probs=110.0

Q ss_pred             hhhhHHHHHHHHhcCCCCCCEEEEeccCCChhhHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEcc
Q 042119          113 VKLSKLEYTILSENGVVQPKKVAFVGSGPMPLTSIIMAKHHLTSTHFDNFDIDEAANDVARSIVASDAEFEGRMKFLTRD  192 (286)
Q Consensus       113 ~~l~~~E~~~l~~~~~~~~~~VL~IG~G~lp~tai~lA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~g~l~~~i~f~~~D  192 (286)
                      -++.-.-...+...+++++++||++|||+ |.++..+|+...++++|+++|+++.+++.+++.++..+    ++..+.+|
T Consensus        56 SKlaa~i~~~l~~l~i~pG~~VLDlGaGs-G~~t~~la~~VG~~G~V~aVD~s~~~l~~a~~~a~~~~----~~~~i~~d  130 (227)
T d1g8aa_          56 SKLGAAIMNGLKNFPIKPGKSVLYLGIAS-GTTASHVSDIVGWEGKIFGIEFSPRVLRELVPIVEERR----NIVPILGD  130 (227)
T ss_dssp             CHHHHHHHTTCCCCCCCTTCEEEEETTTS-TTHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHSSCT----TEEEEECC
T ss_pred             cHHHHHHHccccccccCCCCEEEEeccCC-CHHHHHHHHHhCCCCEEEEEeCcHHHHHHHHHHHHhcC----CceEEEEE
Confidence            34444333334455679999999999996 77888899865688999999999999999999877655    57888888


Q ss_pred             ccchhh---cCCCcceeehhhhccCChhHHHHHHHHHHhhccCCcEEEEee-cCcceeeecccC---Ccccc--cCcEEE
Q 042119          193 IMEVKE---QLGEYDCIFLAALVGMSKEEKLTILGHIRKYMKDGGILLVRS-AKGARAFLYPVV---VEHDL--LDFEVL  263 (286)
Q Consensus       193 ~~~~~~---~l~~fD~V~~aalvg~~~~~k~~vl~~l~~~l~pgg~lv~r~-~~g~r~~lyp~v---~~~~l--~gf~~~  263 (286)
                      +.....   ....+|+||.+..   ..++...++.++.+.|||||.+++.. +.......-|..   +...+  .||+++
T Consensus       131 ~~~~~~~~~~~~~vD~i~~d~~---~~~~~~~~l~~~~~~LkpgG~lvi~~ka~~~~~~~~~~~v~~~v~~l~~~gf~ii  207 (227)
T d1g8aa_         131 ATKPEEYRALVPKVDVIFEDVA---QPTQAKILIDNAEVYLKRGGYGMIAVKSRSIDVTKEPEQVFREVERELSEYFEVI  207 (227)
T ss_dssp             TTCGGGGTTTCCCEEEEEECCC---STTHHHHHHHHHHHHEEEEEEEEEEEEGGGTCTTSCHHHHHHHHHHHHHTTSEEE
T ss_pred             CCCcccccccccceEEEEEEcc---ccchHHHHHHHHHHhcccCCeEEEEEECCccCCCCCHHHHHHHHHHHHHcCCEEE
Confidence            865332   2246788876532   12577789999999999999988753 111111111100   00111  589988


Q ss_pred             EEe--cCcccceeeeEEEeec
Q 042119          264 SAV--HPNDDVINSVVLVRNS  282 (286)
Q Consensus       264 ~~~--~P~~~vinsvi~~r~~  282 (286)
                      ...  +|..+ -...||+||.
T Consensus       208 e~i~L~p~~~-~H~~vv~rK~  227 (227)
T d1g8aa_         208 ERLNLEPYEK-DHALFVVRKT  227 (227)
T ss_dssp             EEEECTTTSS-SEEEEEEECC
T ss_pred             EEEcCCCCCC-ceEEEEEEeC
Confidence            654  57644 3578999984

>d1g8sa_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Fibrillarin homologue
domain: Fibrillarin homologue
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=99.48  E-value=1.2e-13  Score=120.95  Aligned_cols=162  Identities=12%  Similarity=0.071  Sum_probs=109.3

Q ss_pred             hhhhHHHHHHHHhcCCCCCCEEEEeccCCChhhHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEcc
Q 042119          113 VKLSKLEYTILSENGVVQPKKVAFVGSGPMPLTSIIMAKHHLTSTHFDNFDIDEAANDVARSIVASDAEFEGRMKFLTRD  192 (286)
Q Consensus       113 ~~l~~~E~~~l~~~~~~~~~~VL~IG~G~lp~tai~lA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~g~l~~~i~f~~~D  192 (286)
                      -+|+..-...+....++++++||++|||+ |.++..+|+ ..+++.|+|+|+||.+++.+++++.+.+    ++.++.+|
T Consensus        57 sklaA~i~~gl~~l~ikpG~~VLDlGcGs-G~~~~~la~-~~~~g~V~aVDiS~~~i~~a~~~a~~~~----ni~~i~~d  130 (230)
T d1g8sa_          57 SKLAAAIIKGLKVMPIKRDSKILYLGASA-GTTPSHVAD-IADKGIVYAIEYAPRIMRELLDACAERE----NIIPILGD  130 (230)
T ss_dssp             CHHHHHHHTTCCCCCCCTTCEEEEESCCS-SHHHHHHHH-HTTTSEEEEEESCHHHHHHHHHHTTTCT----TEEEEECC
T ss_pred             cHHHHHHHhhHHhCCCCCCCEEEEeCEEc-CHHHHHHHH-hCCCCEEEEEeCcHHHHHHHHHHHhhhc----ccceEEEe
Confidence            35554444444455679999999999996 888999998 5788999999999999999999866544    68889999


Q ss_pred             ccchhhcC-CCcceeehhhhccCChhHHHHHHHHHHhhccCCcEEEEee-cCcceeeecccCCc----ccc--cCcEEEE
Q 042119          193 IMEVKEQL-GEYDCIFLAALVGMSKEEKLTILGHIRKYMKDGGILLVRS-AKGARAFLYPVVVE----HDL--LDFEVLS  264 (286)
Q Consensus       193 ~~~~~~~l-~~fD~V~~aalvg~~~~~k~~vl~~l~~~l~pgg~lv~r~-~~g~r~~lyp~v~~----~~l--~gf~~~~  264 (286)
                      +....... ..+|++++...+. ..++...++.++.+.|||||.+++.. +.......-|....    +.|  .||+++.
T Consensus       131 ~~~~~~~~~~~~~v~~i~~~~~-~~~~~~~~l~~~~r~LKpgG~~~i~~k~~~~d~~~~~~~~~~e~~~~L~~aGF~ive  209 (230)
T d1g8sa_         131 ANKPQEYANIVEKVDVIYEDVA-QPNQAEILIKNAKWFLKKGGYGMIAIKARSIDVTKDPKEIFKEQKEILEAGGFKIVD  209 (230)
T ss_dssp             TTCGGGGTTTCCCEEEEEECCC-STTHHHHHHHHHHHHEEEEEEEEEEEEGGGTCSSSCHHHHHHHHHHHHHHHTEEEEE
T ss_pred             eccCcccccccceeEEeecccc-chHHHHHHHHHHHHhcccCceEEEEeeccccCCCCCHHHHHHHHHHHHHHcCCEEEE
Confidence            87654322 2466655444332 23677889999999999999988753 22111111111001    122  5999886


Q ss_pred             Eec--CcccceeeeEEEeec
Q 042119          265 AVH--PNDDVINSVVLVRNS  282 (286)
Q Consensus       265 ~~~--P~~~vinsvi~~r~~  282 (286)
                      ...  |..+- ..+||++-+
T Consensus       210 ~idL~py~~~-H~~vvg~y~  228 (230)
T d1g8sa_         210 EVDIEPFEKD-HVMFVGIWE  228 (230)
T ss_dssp             EEECTTTSTT-EEEEEEEEC
T ss_pred             EecCCCCcCC-eEEEEEEec
Confidence            554  65332 556776643

>d2a14a1 c.66.1.15 (A:5-261) Indolethylamine N-methyltransferase, INMT {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Arylamine N-methyltransferase
domain: Indolethylamine N-methyltransferase, INMT
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.47  E-value=8.3e-14  Score=121.06  Aligned_cols=111  Identities=17%  Similarity=0.204  Sum_probs=75.9

Q ss_pred             CCCCCCEEEEeccCCChhhHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCe--------------------
Q 042119          127 GVVQPKKVAFVGSGPMPLTSIIMAKHHLTSTHFDNFDIDEAANDVARSIVASDAEFEGRM--------------------  186 (286)
Q Consensus       127 ~~~~~~~VL~IG~G~lp~tai~lA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~g~l~~~i--------------------  186 (286)
                      +..++++|||||||++..+ +.+|+.  .+.+|+|+|+|+.+++.|++.++..+ ..-..                    
T Consensus        48 ~~~~g~~vLDlGcG~G~~~-~~~~~~--~~~~v~giD~S~~~i~~a~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~  123 (257)
T d2a14a1          48 GGLQGDTLIDIGSGPTIYQ-VLAACD--SFQDITLSDFTDRNREELEKWLKKEP-GAYDWTPAVKFACELEGNSGRWEEK  123 (257)
T ss_dssp             TSCCEEEEEESSCTTCCGG-GTTGGG--TEEEEEEEESCHHHHHHHHHHHHTCT-TCCCCHHHHHHHHHHTTCGGGHHHH
T ss_pred             cCCCCCEEEEECCCCCHhH-HHHhcc--ccCcEEEecCCHHHHHHHHHHHhhcc-ccchhhhHHHHHHHhccccchHHHH
Confidence            4567889999999986665 455551  34579999999999999999988765 21110                    


Q ss_pred             ---------EEEEccc----cchhhcCCCcceeehhhh---ccCChhHHHHHHHHHHhhccCCcEEEEeec
Q 042119          187 ---------KFLTRDI----MEVKEQLGEYDCIFLAAL---VGMSKEEKLTILGHIRKYMKDGGILLVRSA  241 (286)
Q Consensus       187 ---------~f~~~D~----~~~~~~l~~fD~V~~aal---vg~~~~~k~~vl~~l~~~l~pgg~lv~r~~  241 (286)
                               .....++    ...+.+.+.||+|+....   +....++...+++++.+.|||||.+++.+.
T Consensus       124 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~i~~~~~l~~~~~~~~~~~~~l~~i~~~LkpGG~li~~~~  194 (257)
T d2a14a1         124 EEKLRAAVKRVLKCDVHLGNPLAPAVLPLADCVLTLLAMECACCSLDAYRAALCNLASLLKPGGHLVTTVT  194 (257)
T ss_dssp             HHHHHHHEEEEEECCTTSSSTTTTCCCCCEEEEEEESCHHHHCSSHHHHHHHHHHHHTTEEEEEEEEEEEE
T ss_pred             HHHHhhhhhcccccccccccccccccCCcccEEeehhhHHHhcccHHHHHHHHHHHHhccCCCcEEEEEEe
Confidence                     0111111    111223457999874322   233446778899999999999999999874

>d2fcaa1 c.66.1.53 (A:10-213) tRNA (guanine-N(7)-)-methyltransferase TrmB {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: TrmB-like
domain: tRNA (guanine-N(7)-)-methyltransferase TrmB
species: Bacillus subtilis [TaxId: 1423]

Probab=99.46  E-value=2.2e-13  Score=117.08  Aligned_cols=106  Identities=18%  Similarity=0.179  Sum_probs=87.9

Q ss_pred             CCEEEEeccCCChhhHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEccccchhh--cCCCcceeeh
Q 042119          131 PKKVAFVGSGPMPLTSIIMAKHHLTSTHFDNFDIDEAANDVARSIVASDAEFEGRMKFLTRDIMEVKE--QLGEYDCIFL  208 (286)
Q Consensus       131 ~~~VL~IG~G~lp~tai~lA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~g~l~~~i~f~~~D~~~~~~--~l~~fD~V~~  208 (286)
                      .-.|||||||. |..++.+|+ ..|+..|+|+|+++.+++.|.+.+++.|+  +++.|+++|+.++..  +.+.+|.|++
T Consensus        30 ~PlvLeIGcG~-G~~~~~lA~-~~p~~~~iGiD~~~~~i~~a~~~~~~~~l--~Nv~~~~~Da~~l~~~~~~~~~d~v~i  105 (204)
T d2fcaa1          30 NPIHIEVGTGK-GQFISGMAK-QNPDINYIGIELFKSVIVTAVQKVKDSEA--QNVKLLNIDADTLTDVFEPGEVKRVYL  105 (204)
T ss_dssp             CCEEEEECCTT-SHHHHHHHH-HCTTSEEEEECSCHHHHHHHHHHHHHSCC--SSEEEECCCGGGHHHHCCTTSCCEEEE
T ss_pred             CceEEEEEecC-cHHHHHHHH-hCCCCcEEEeecchHHHHHHHHHHHHHhc--cCchhcccchhhhhcccCchhhhcccc
Confidence            34799999995 777888998 58999999999999999999999999994  689999999988763  3357999887


Q ss_pred             hhhccCChhHH-------HHHHHHHHhhccCCcEEEEee
Q 042119          209 AALVGMSKEEK-------LTILGHIRKYMKDGGILLVRS  240 (286)
Q Consensus       209 aalvg~~~~~k-------~~vl~~l~~~l~pgg~lv~r~  240 (286)
                      ..-..+++...       ..+++.+++.|||||.|.+++
T Consensus       106 ~fp~P~~k~~h~k~Rl~~~~~l~~~~r~LkpgG~l~i~T  144 (204)
T d2fcaa1         106 NFSDPWPKKRHEKRRLTYSHFLKKYEEVMGKGGSIHFKT  144 (204)
T ss_dssp             ESCCCCCSGGGGGGSTTSHHHHHHHHHHHTTSCEEEEEE
T ss_pred             ccccccchhhhcchhhhHHHHHHHHHHhCCCCcEEEEEE
Confidence            65545443221       479999999999999999876

>d2p7ia1 c.66.1.41 (A:22-246) Hypothetical protein ECA1738 {Erwinia carotovora [TaxId: 554]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: UbiE/COQ5-like
domain: Hypothetical protein ECA1738
species: Erwinia carotovora [TaxId: 554]

Probab=99.45  E-value=9.6e-14  Score=119.68  Aligned_cols=100  Identities=15%  Similarity=0.245  Sum_probs=80.1

Q ss_pred             CCCCEEEEeccCCChhhHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEccccchhhcCCCcceeeh
Q 042119          129 VQPKKVAFVGSGPMPLTSIIMAKHHLTSTHFDNFDIDEAANDVARSIVASDAEFEGRMKFLTRDIMEVKEQLGEYDCIFL  208 (286)
Q Consensus       129 ~~~~~VL~IG~G~lp~tai~lA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~g~l~~~i~f~~~D~~~~~~~l~~fD~V~~  208 (286)
                      ..+++|||||||+ |..+..+++   .|.+|+|||+|+++++.|++.   .+   ++++|+++|..+...+ +.||+|+.
T Consensus        19 ~~~~~VLDiGcG~-G~~~~~l~~---~g~~v~giD~s~~~i~~a~~~---~~---~~~~~~~~~~~~~~~~-~~fD~I~~   87 (225)
T d2p7ia1          19 FRPGNLLELGSFK-GDFTSRLQE---HFNDITCVEASEEAISHAQGR---LK---DGITYIHSRFEDAQLP-RRYDNIVL   87 (225)
T ss_dssp             CCSSCEEEESCTT-SHHHHHHTT---TCSCEEEEESCHHHHHHHHHH---SC---SCEEEEESCGGGCCCS-SCEEEEEE
T ss_pred             CCCCcEEEEeCCC-cHHHHHHHH---cCCeEEEEeCcHHHhhhhhcc---cc---cccccccccccccccc-cccccccc
Confidence            4577999999997 555677887   578999999999999999976   33   5799999999876543 68999986


Q ss_pred             hhhccCChhHHHHHHHHHH-hhccCCcEEEEee
Q 042119          209 AALVGMSKEEKLTILGHIR-KYMKDGGILLVRS  240 (286)
Q Consensus       209 aalvg~~~~~k~~vl~~l~-~~l~pgg~lv~r~  240 (286)
                      ...+.+ .++...++.++. ++|+|||.+++..
T Consensus        88 ~~vleh-~~d~~~~l~~i~~~~Lk~gG~l~i~~  119 (225)
T d2p7ia1          88 THVLEH-IDDPVALLKRINDDWLAEGGRLFLVC  119 (225)
T ss_dssp             ESCGGG-CSSHHHHHHHHHHTTEEEEEEEEEEE
T ss_pred             cceeEe-cCCHHHHHHHHHHHhcCCCceEEEEe
Confidence            554422 356678999998 7899999999864

>d2b25a1 c.66.1.13 (A:6-329) Hypothetical protein FLJ20628 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: tRNA(1-methyladenosine) methyltransferase-like
domain: Hypothetical protein FLJ20628
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.44  E-value=1e-13  Score=127.23  Aligned_cols=111  Identities=21%  Similarity=0.261  Sum_probs=87.7

Q ss_pred             HHhcCCCCCCEEEEeccCCChhhHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcC---------CCCCCeEEEEccc
Q 042119          123 LSENGVVQPKKVAFVGSGPMPLTSIIMAKHHLTSTHFDNFDIDEAANDVARSIVASDA---------EFEGRMKFLTRDI  193 (286)
Q Consensus       123 l~~~~~~~~~~VL~IG~G~lp~tai~lA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~g---------~l~~~i~f~~~D~  193 (286)
                      +...++.+|++|||+|||+ |..++.||+...++++|+++|+++++++.|++++++.+         ...+++.|.++|+
T Consensus        91 l~~l~i~pG~rVLE~GtGs-G~lt~~LAr~vg~~G~V~t~E~~~~~~~~A~~n~~~~~~~~~~~~~~~~~~nv~~~~~di  169 (324)
T d2b25a1          91 LSMMDINPGDTVLEAGSGS-GGMSLFLSKAVGSQGRVISFEVRKDHHDLAKKNYKHWRDSWKLSHVEEWPDNVDFIHKDI  169 (324)
T ss_dssp             HHHHTCCTTCEEEEECCTT-SHHHHHHHHHHCTTCEEEEEESSHHHHHHHHHHHHHHHHHHTTTCSSCCCCCEEEEESCT
T ss_pred             HHHhCCCCCCEEEEecccc-cHHHHHHHHHhCCCcEEEEecCCHHHHHHHHHHHHHhhhhhhhhhhhccccceeEEecch
Confidence            3345789999999999997 56667888866789999999999999999999998642         1357899999999


Q ss_pred             cchhhcC--CCcceeehhhhccCChhHHHHHHHHHHhhccCCcEEEEee
Q 042119          194 MEVKEQL--GEYDCIFLAALVGMSKEEKLTILGHIRKYMKDGGILLVRS  240 (286)
Q Consensus       194 ~~~~~~l--~~fD~V~~aalvg~~~~~k~~vl~~l~~~l~pgg~lv~r~  240 (286)
                      .+....+  ..||.||++.      ++...++.++.+.|||||++++-.
T Consensus       170 ~~~~~~~~~~~fD~V~LD~------p~P~~~l~~~~~~LKpGG~lv~~~  212 (324)
T d2b25a1         170 SGATEDIKSLTFDAVALDM------LNPHVTLPVFYPHLKHGGVCAVYV  212 (324)
T ss_dssp             TCCC-------EEEEEECS------SSTTTTHHHHGGGEEEEEEEEEEE
T ss_pred             hhcccccCCCCcceEeecC------cCHHHHHHHHHHhccCCCEEEEEe
Confidence            7765544  3699999752      344569999999999999999843

>d2g72a1 c.66.1.15 (A:18-280) Phenylethanolamine N-methyltransferase, PNMTase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Arylamine N-methyltransferase
domain: Phenylethanolamine N-methyltransferase, PNMTase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.41  E-value=6e-13  Score=117.77  Aligned_cols=125  Identities=16%  Similarity=0.111  Sum_probs=83.8

Q ss_pred             hhhhhHHHHHHHHhcCCCCCCEEEEeccCCChhhHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCC------
Q 042119          112 YVKLSKLEYTILSENGVVQPKKVAFVGSGPMPLTSIIMAKHHLTSTHFDNFDIDEAANDVARSIVASDAEFEGR------  185 (286)
Q Consensus       112 y~~l~~~E~~~l~~~~~~~~~~VL~IG~G~lp~tai~lA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~g~l~~~------  185 (286)
                      +..-...++..+...+...+++||||||||+-++.+.+++   ...+|+|+|+|+.+++.+++.+++.+. .-.      
T Consensus        36 ~~~~~~~~~~~~f~~g~~~g~~vLDiGcG~g~~~~~~~~~---~~~~v~~~D~S~~~i~~~~~~~~~~~~-~~d~~~~~~  111 (263)
T d2g72a1          36 VGPWKLRCLAQTFATGEVSGRTLIDIGSGPTVYQLLSACS---HFEDITMTDFLEVNRQELGRWLQEEPG-AFNWSMYSQ  111 (263)
T ss_dssp             HHHHHHHHHHHHHHTSCSCCSEEEEETCTTCCGGGTTGGG---GCSEEEEECSCHHHHHHHHHHHTTCTT-CCCCHHHHH
T ss_pred             hhhhHHHHHHHHcCCCCCCCcEEEEeccCCCHHHHHHhcc---cCCeEEEEeCCHHHHHHHHHHHhcCcc-cccchhhhh
Confidence            3333334455444456678999999999996565544444   356899999999999999998776541 111      


Q ss_pred             -----------------------eEEEEccccchh------hcCCCcceeehhhh---ccCChhHHHHHHHHHHhhccCC
Q 042119          186 -----------------------MKFLTRDIMEVK------EQLGEYDCIFLAAL---VGMSKEEKLTILGHIRKYMKDG  233 (286)
Q Consensus       186 -----------------------i~f~~~D~~~~~------~~l~~fD~V~~aal---vg~~~~~k~~vl~~l~~~l~pg  233 (286)
                                             -.....|+..-.      ...+.||+|+....   +..+.++..++++++.++||||
T Consensus       112 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~~~~~~~~~~~fD~V~~~~~l~~i~~~~~~~~~~l~~~~~~LkPG  191 (263)
T d2g72a1         112 HACLIEGKGECWQDKERQLRARVKRVLPIDVHQPQPLGAGSPAPLPADALVSAFCLEAVSPDLASFQRALDHITTLLRPG  191 (263)
T ss_dssp             HHHHHHCSCCCHHHHHHHHHHHEEEEECCCTTSSSTTCSSCSSCSSEEEEEEESCHHHHCSSHHHHHHHHHHHHTTEEEE
T ss_pred             hhhhhccccchhhhhHHHhhhhhhccccccccCCCccccCCcCcCccCeeeeHHHHHHHccCHHHHHHHHHHHHHHcCCC
Confidence                                   122334443211      11236999975432   2334567788999999999999


Q ss_pred             cEEEEee
Q 042119          234 GILLVRS  240 (286)
Q Consensus       234 g~lv~r~  240 (286)
                      |.+++.+
T Consensus       192 G~li~~~  198 (263)
T d2g72a1         192 GHLLLIG  198 (263)
T ss_dssp             EEEEEEE
T ss_pred             CEEEEec
Confidence            9999986

>d1vlma_ c.66.1.41 (A:) Possible histamine N-methyltransferase TM1293 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: UbiE/COQ5-like
domain: Possible histamine N-methyltransferase TM1293
species: Thermotoga maritima [TaxId: 2336]

Probab=99.38  E-value=4.2e-13  Score=113.42  Aligned_cols=102  Identities=13%  Similarity=0.146  Sum_probs=78.2

Q ss_pred             HHHHHhcCCCCCCEEEEeccCCChhhHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEccccchhhc
Q 042119          120 YTILSENGVVQPKKVAFVGSGPMPLTSIIMAKHHLTSTHFDNFDIDEAANDVARSIVASDAEFEGRMKFLTRDIMEVKEQ  199 (286)
Q Consensus       120 ~~~l~~~~~~~~~~VL~IG~G~lp~tai~lA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~g~l~~~i~f~~~D~~~~~~~  199 (286)
                      ...+...  .++.+|||||||++ ..+..++       +++|||+|+.+++.|++.         +++++++|+.+++..
T Consensus        28 ~~~~~~~--~~~~~vLDiGcG~G-~~~~~~~-------~~~giD~s~~~~~~a~~~---------~~~~~~~d~~~l~~~   88 (208)
T d1vlma_          28 LQAVKCL--LPEGRGVEIGVGTG-RFAVPLK-------IKIGVEPSERMAEIARKR---------GVFVLKGTAENLPLK   88 (208)
T ss_dssp             HHHHHHH--CCSSCEEEETCTTS-TTHHHHT-------CCEEEESCHHHHHHHHHT---------TCEEEECBTTBCCSC
T ss_pred             HHHHHhh--CCCCeEEEECCCCc-ccccccc-------eEEEEeCChhhccccccc---------ccccccccccccccc
Confidence            3444443  35669999999974 4444443       368999999999999873         479999999988776


Q ss_pred             CCCcceeehhhhccCChhHHHHHHHHHHhhccCCcEEEEeec
Q 042119          200 LGEYDCIFLAALVGMSKEEKLTILGHIRKYMKDGGILLVRSA  241 (286)
Q Consensus       200 l~~fD~V~~aalvg~~~~~k~~vl~~l~~~l~pgg~lv~r~~  241 (286)
                      .+.||+|+....+.+ .+++.++++++++.|+|||.+++...
T Consensus        89 ~~~fD~I~~~~~l~h-~~d~~~~l~~~~~~L~pgG~l~i~~~  129 (208)
T d1vlma_          89 DESFDFALMVTTICF-VDDPERALKEAYRILKKGGYLIVGIV  129 (208)
T ss_dssp             TTCEEEEEEESCGGG-SSCHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred             ccccccccccccccc-ccccccchhhhhhcCCCCceEEEEec
Confidence            678999986654432 25677899999999999999998763

>d1jg1a_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Protein-L-isoaspartyl O-methyltransferase
domain: Protein-L-isoaspartyl O-methyltransferase
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=99.35  E-value=1.6e-12  Score=112.66  Aligned_cols=109  Identities=14%  Similarity=0.152  Sum_probs=87.0

Q ss_pred             HHHHHHhcCCCCCCEEEEeccCCChhhHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEccccchhh
Q 042119          119 EYTILSENGVVQPKKVAFVGSGPMPLTSIIMAKHHLTSTHFDNFDIDEAANDVARSIVASDAEFEGRMKFLTRDIMEVKE  198 (286)
Q Consensus       119 E~~~l~~~~~~~~~~VL~IG~G~lp~tai~lA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~g~l~~~i~f~~~D~~~~~~  198 (286)
                      ....+....++++.+||+||||+ |+.+.++|+  +.|.+|++||++++.++.|++.+++.|.  +++.++++|+.+-..
T Consensus        67 ~a~ml~~L~l~~g~~VLeIGsGs-GY~taila~--l~g~~V~~ie~~~~l~~~a~~~l~~~g~--~nv~~~~gd~~~g~~  141 (215)
T d1jg1a_          67 VAIMLEIANLKPGMNILEVGTGS-GWNAALISE--IVKTDVYTIERIPELVEFAKRNLERAGV--KNVHVILGDGSKGFP  141 (215)
T ss_dssp             HHHHHHHHTCCTTCCEEEECCTT-SHHHHHHHH--HHCSCEEEEESCHHHHHHHHHHHHHTTC--CSEEEEESCGGGCCG
T ss_pred             HHHHHHhhccCccceEEEecCCC-ChhHHHHHH--hhCceeEEEeccHHHHHHHHHHHHHcCC--ceeEEEECccccCCc
Confidence            33444455789999999999996 777778887  3578899999999999999999999995  799999999987555


Q ss_pred             cCCCcceeehhhhccCChhHHHHHHHHHHhhccCCcEEEEe
Q 042119          199 QLGEYDCIFLAALVGMSKEEKLTILGHIRKYMKDGGILLVR  239 (286)
Q Consensus       199 ~l~~fD~V~~aalvg~~~~~k~~vl~~l~~~l~pgg~lv~r  239 (286)
                      ....||.|++.+.+.   ..+    +.+.+.|+|||++++-
T Consensus       142 ~~~pfD~Iiv~~a~~---~ip----~~l~~qL~~gGrLv~p  175 (215)
T d1jg1a_         142 PKAPYDVIIVTAGAP---KIP----EPLIEQLKIGGKLIIP  175 (215)
T ss_dssp             GGCCEEEEEECSBBS---SCC----HHHHHTEEEEEEEEEE
T ss_pred             ccCcceeEEeecccc---cCC----HHHHHhcCCCCEEEEE
Confidence            556899999876652   111    2356678999999874

>d1xvaa_ c.66.1.5 (A:) Glycine N-methyltransferase {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Glycine N-methyltransferase
domain: Glycine N-methyltransferase
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.34  E-value=1.3e-12  Score=116.71  Aligned_cols=107  Identities=14%  Similarity=0.206  Sum_probs=78.8

Q ss_pred             CCCCEEEEeccCCChhhHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCC---CCeEEEEccccchhhc---CCC
Q 042119          129 VQPKKVAFVGSGPMPLTSIIMAKHHLTSTHFDNFDIDEAANDVARSIVASDAEFE---GRMKFLTRDIMEVKEQ---LGE  202 (286)
Q Consensus       129 ~~~~~VL~IG~G~lp~tai~lA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~g~l~---~~i~f~~~D~~~~~~~---l~~  202 (286)
                      ..+++|||||||+ |..++.||+   .|.+|+|+|+|++|++.|++.....+ ..   .+..+..+|......+   ...
T Consensus        55 ~~~~~vLD~GcG~-G~~~~~la~---~g~~v~gvD~S~~ml~~A~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~  129 (292)
T d1xvaa_          55 HGCHRVLDVACGT-GVDSIMLVE---EGFSVTSVDASDKMLKYALKERWNRR-KEPAFDKWVIEEANWLTLDKDVPAGDG  129 (292)
T ss_dssp             TTCCEEEESSCTT-SHHHHHHHH---TTCEEEEEESCHHHHHHHHHHHHHTT-TSHHHHTCEEEECCGGGHHHHSCCTTC
T ss_pred             cCCCEEEEecCCC-cHHHHHHHH---cCCeeeeccCchHHHHHHHHHHHhcc-cccccceeeeeeccccccccccCCCCC
Confidence            4578999999996 667788998   68999999999999999999987766 22   2334555555433222   247


Q ss_pred             cceeehhh--hccC-----ChhHHHHHHHHHHhhccCCcEEEEee
Q 042119          203 YDCIFLAA--LVGM-----SKEEKLTILGHIRKYMKDGGILLVRS  240 (286)
Q Consensus       203 fD~V~~aa--lvg~-----~~~~k~~vl~~l~~~l~pgg~lv~r~  240 (286)
                      ||+|+...  +-.+     +.++...+|+++.++|||||++++..
T Consensus       130 fd~v~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~li~~~  174 (292)
T d1xvaa_         130 FDAVICLGNSFAHLPDSKGDQSEHRLALKNIASMVRPGGLLVIDH  174 (292)
T ss_dssp             EEEEEECSSCGGGSCCTTSSSHHHHHHHHHHHHTEEEEEEEEEEE
T ss_pred             ceEEEEecCchhhcCCcccChHHHHHHHHHHHHHcCcCcEEEEee
Confidence            99887532  2122     23567789999999999999999853

>d1vbfa_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Sulfolobus tokodaii [TaxId: 111955]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Protein-L-isoaspartyl O-methyltransferase
domain: Protein-L-isoaspartyl O-methyltransferase
species: Sulfolobus tokodaii [TaxId: 111955]

Probab=99.34  E-value=3.4e-12  Score=111.12  Aligned_cols=103  Identities=21%  Similarity=0.297  Sum_probs=81.1

Q ss_pred             HHHhcCCCCCCEEEEeccCCChhhHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEccccchhhcCC
Q 042119          122 ILSENGVVQPKKVAFVGSGPMPLTSIIMAKHHLTSTHFDNFDIDEAANDVARSIVASDAEFEGRMKFLTRDIMEVKEQLG  201 (286)
Q Consensus       122 ~l~~~~~~~~~~VL~IG~G~lp~tai~lA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~g~l~~~i~f~~~D~~~~~~~l~  201 (286)
                      .+....++++++||+||||+ |+.+.+||+   .+.+|+++|+++++++.|+++....    .+++++++|+..-..+.+
T Consensus        62 ml~~L~l~~g~~VLdIG~Gs-Gy~ta~La~---l~~~V~aiE~~~~~~~~A~~~~~~~----~nv~~~~~d~~~g~~~~~  133 (224)
T d1vbfa_          62 MLDELDLHKGQKVLEIGTGI-GYYTALIAE---IVDKVVSVEINEKMYNYASKLLSYY----NNIKLILGDGTLGYEEEK  133 (224)
T ss_dssp             HHHHTTCCTTCEEEEECCTT-SHHHHHHHH---HSSEEEEEESCHHHHHHHHHHHTTC----SSEEEEESCGGGCCGGGC
T ss_pred             HHHHhhhcccceEEEecCCC-CHHHHHHHH---HhcccccccccHHHHHHHHHHHhcc----cccccccCchhhcchhhh
Confidence            44455679999999999996 566667888   5689999999999999999986643    589999999876444446


Q ss_pred             CcceeehhhhccCChhHHHHHHHHHHhhccCCcEEEEe
Q 042119          202 EYDCIFLAALVGMSKEEKLTILGHIRKYMKDGGILLVR  239 (286)
Q Consensus       202 ~fD~V~~aalvg~~~~~k~~vl~~l~~~l~pgg~lv~r  239 (286)
                      .||.|++.+.+.       .+.+.+.+.|+|||++++-
T Consensus       134 pfD~Iiv~~a~~-------~ip~~l~~qLk~GGrLV~p  164 (224)
T d1vbfa_         134 PYDRVVVWATAP-------TLLCKPYEQLKEGGIMILP  164 (224)
T ss_dssp             CEEEEEESSBBS-------SCCHHHHHTEEEEEEEEEE
T ss_pred             hHHHHHhhcchh-------hhhHHHHHhcCCCCEEEEE
Confidence            799999876552       1334567889999999884

>d1yzha1 c.66.1.53 (A:8-211) tRNA (guanine-N(7)-)-methyltransferase TrmB {Streptococcus pneumoniae [TaxId: 1313]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: TrmB-like
domain: tRNA (guanine-N(7)-)-methyltransferase TrmB
species: Streptococcus pneumoniae [TaxId: 1313]

Probab=99.33  E-value=5.2e-12  Score=108.37  Aligned_cols=106  Identities=21%  Similarity=0.212  Sum_probs=86.5

Q ss_pred             CCEEEEeccCCChhhHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEccccchhhcC--CCcceeeh
Q 042119          131 PKKVAFVGSGPMPLTSIIMAKHHLTSTHFDNFDIDEAANDVARSIVASDAEFEGRMKFLTRDIMEVKEQL--GEYDCIFL  208 (286)
Q Consensus       131 ~~~VL~IG~G~lp~tai~lA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~g~l~~~i~f~~~D~~~~~~~l--~~fD~V~~  208 (286)
                      .-.|||||||. |..++.+|+ ..|+..++|+|+++.++..|.+.+.+.|+  +++.|+.+|+.++...+  ..+|.|++
T Consensus        32 ~plvLdIGcG~-G~~~~~lA~-~~p~~~~iGid~~~~~v~~a~~~~~~~~l--~Ni~~~~~da~~l~~~~~~~~~~~i~i  107 (204)
T d1yzha1          32 NPIHVEVGSGK-GAFVSGMAK-QNPDINYIGIDIQKSVLSYALDKVLEVGV--PNIKLLWVDGSDLTDYFEDGEIDRLYL  107 (204)
T ss_dssp             CCEEEEESCTT-SHHHHHHHH-HCTTSEEEEEESCHHHHHHHHHHHHHHCC--SSEEEEECCSSCGGGTSCTTCCSEEEE
T ss_pred             CCeEEEEeccC-CHHHHHHHH-HCCCCceEEEeccHHHHHHHHHhhhhhcc--ccceeeecCHHHHhhhccCCceehhcc
Confidence            34799999995 777888998 58999999999999999999999999994  68999999998876433  46898886


Q ss_pred             hhhccCChhH-------HHHHHHHHHhhccCCcEEEEee
Q 042119          209 AALVGMSKEE-------KLTILGHIRKYMKDGGILLVRS  240 (286)
Q Consensus       209 aalvg~~~~~-------k~~vl~~l~~~l~pgg~lv~r~  240 (286)
                      ..--.|++..       ...+++.+++.|+|||.|.+.+
T Consensus       108 ~fPdPw~K~~h~krRl~~~~~l~~~~~~LkpgG~l~i~T  146 (204)
T d1yzha1         108 NFSDPWPKKRHEKRRLTYKTFLDTFKRILPENGEIHFKT  146 (204)
T ss_dssp             ESCCCCCSGGGGGGSTTSHHHHHHHHHHSCTTCEEEEEE
T ss_pred             cccccccchhhhhhhhhHHHHHHHHHHhCCCCcEEEEEE
Confidence            5433443221       1479999999999999998876

>d1nw3a_ c.66.1.31 (A:) Catalytic, N-terminal domain of histone methyltransferase Dot1l {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Catalytic, N-terminal domain of histone methyltransferase Dot1l
domain: Catalytic, N-terminal domain of histone methyltransferase Dot1l
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.32  E-value=1.1e-11  Score=113.13  Aligned_cols=114  Identities=14%  Similarity=0.144  Sum_probs=87.2

Q ss_pred             HHHhcCCCCCCEEEEeccCCChhhHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhc-------CCCCCCeEEEEcccc
Q 042119          122 ILSENGVVQPKKVAFVGSGPMPLTSIIMAKHHLTSTHFDNFDIDEAANDVARSIVASD-------AEFEGRMKFLTRDIM  194 (286)
Q Consensus       122 ~l~~~~~~~~~~VL~IG~G~lp~tai~lA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~-------g~l~~~i~f~~~D~~  194 (286)
                      .+....++++++|+|||||. |..++.+|+ ..+..+++|||+++++++.|++..+..       |.-..+++|++||+.
T Consensus       143 ~~~~~~l~~~~~vlD~GcG~-G~~~~~~a~-~~~~~~~~Gid~s~~~~~~a~~~~~~~~~~~~~~g~~~~~i~~~~gd~~  220 (328)
T d1nw3a_         143 MIDEIKMTDDDLFVDLGSGV-GQVVLQVAA-ATNCKHHYGVEKADIPAKYAETMDREFRKWMKWYGKKHAEYTLERGDFL  220 (328)
T ss_dssp             HHHHSCCCTTCEEEEETCTT-SHHHHHHHH-HCCCSEEEEEECSHHHHHHHHHHHHHHHHHHHHHTCCCCCEEEEECCTT
T ss_pred             HHHHcCCCCCCEEEEcCCCC-CHHHHHHHH-HhCCCeEEEEeCCHHHHHHHHHHHHHHHHHhhhccccCCceEEEECccc
Confidence            45566789999999999996 666677777 355568999999999999999876643       311257999999998


Q ss_pred             chhhcCC--CcceeehhhhccCChhHHHHHHHHHHhhccCCcEEEEe
Q 042119          195 EVKEQLG--EYDCIFLAALVGMSKEEKLTILGHIRKYMKDGGILLVR  239 (286)
Q Consensus       195 ~~~~~l~--~fD~V~~aalvg~~~~~k~~vl~~l~~~l~pgg~lv~r  239 (286)
                      +.+....  ++|+||+..+. + .++....+.++.+.|||||++++-
T Consensus       221 ~~~~~~~~~~advi~~~~~~-f-~~~~~~~l~e~~r~LKpGg~iv~~  265 (328)
T d1nw3a_         221 SEEWRERIANTSVIFVNNFA-F-GPEVDHQLKERFANMKEGGRIVSS  265 (328)
T ss_dssp             SHHHHHHHHHCSEEEECCTT-T-CHHHHHHHHHHHTTCCTTCEEEES
T ss_pred             ccccccccCcceEEEEccee-c-chHHHHHHHHHHHhCCCCcEEEEe
Confidence            7654322  45788865443 2 256678999999999999999874

>d1g6q1_ c.66.1.6 (1:) Arginine methyltransferase, HMT1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Arginine methyltransferase
domain: Arginine methyltransferase, HMT1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.31  E-value=3.5e-12  Score=116.16  Aligned_cols=103  Identities=21%  Similarity=0.330  Sum_probs=83.6

Q ss_pred             CCCCEEEEeccCCChhhHHHHHhhcCCC-cEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEccccchhhcCCCcceee
Q 042119          129 VQPKKVAFVGSGPMPLTSIIMAKHHLTS-THFDNFDIDEAANDVARSIVASDAEFEGRMKFLTRDIMEVKEQLGEYDCIF  207 (286)
Q Consensus       129 ~~~~~VL~IG~G~lp~tai~lA~~~~~g-~~V~~iDid~~ai~~Ar~~~~~~g~l~~~i~f~~~D~~~~~~~l~~fD~V~  207 (286)
                      .++++|||||||+ |..++.+|+   .| .+|+++|.++ +++.|++.+++.| +.++++++++|+.++..+...||+|+
T Consensus        37 ~~~~~VLDlGcGt-G~ls~~aa~---~Ga~~V~avd~s~-~~~~a~~~~~~~~-~~~~i~~i~~~~~~l~~~~~~~D~i~  110 (328)
T d1g6q1_          37 FKDKIVLDVGCGT-GILSMFAAK---HGAKHVIGVDMSS-IIEMAKELVELNG-FSDKITLLRGKLEDVHLPFPKVDIII  110 (328)
T ss_dssp             HTTCEEEEETCTT-SHHHHHHHH---TCCSEEEEEESST-HHHHHHHHHHHTT-CTTTEEEEESCTTTSCCSSSCEEEEE
T ss_pred             CCcCEEEEeCCCC-CHHHHHHHH---hCCCEEEEEeCCH-HHHHHHHHHHHhC-ccccceEEEeehhhccCcccceeEEE
Confidence            4789999999996 566688887   45 4899999996 6789999999999 78999999999988776656899997


Q ss_pred             hhhhc--cCChhHHHHHHHHHHhhccCCcEEE
Q 042119          208 LAALV--GMSKEEKLTILGHIRKYMKDGGILL  237 (286)
Q Consensus       208 ~aalv--g~~~~~k~~vl~~l~~~l~pgg~lv  237 (286)
                      ..-+.  .........++..+.+.|||||+++
T Consensus       111 se~~~~~~~~e~~~~~~~~a~~r~LkpgG~ii  142 (328)
T d1g6q1_         111 SEWMGYFLLYESMMDTVLYARDHYLVEGGLIF  142 (328)
T ss_dssp             ECCCBTTBSTTCCHHHHHHHHHHHEEEEEEEE
T ss_pred             EEecceeeccchhHHHHHHHHHhccCCCeEEE
Confidence            53221  2233566778999999999999986

>d1oria_ c.66.1.6 (A:) Protein arginine N-methyltransferase 1, PRMT1 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Arginine methyltransferase
domain: Protein arginine N-methyltransferase 1, PRMT1
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.28  E-value=5.1e-12  Score=114.56  Aligned_cols=104  Identities=19%  Similarity=0.242  Sum_probs=83.3

Q ss_pred             CCCCEEEEeccCCChhhHHHHHhhcCCC-cEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEccccchhhcCCCcceee
Q 042119          129 VQPKKVAFVGSGPMPLTSIIMAKHHLTS-THFDNFDIDEAANDVARSIVASDAEFEGRMKFLTRDIMEVKEQLGEYDCIF  207 (286)
Q Consensus       129 ~~~~~VL~IG~G~lp~tai~lA~~~~~g-~~V~~iDid~~ai~~Ar~~~~~~g~l~~~i~f~~~D~~~~~~~l~~fD~V~  207 (286)
                      .++++|||||||+ |..++++|+   .| .+|+++|.++. ...|++.+++.| +.++|+++++|+.++..+...||+|+
T Consensus        32 ~~~~~VLDiGcG~-G~ls~~aa~---~Ga~~V~avd~s~~-~~~a~~~~~~n~-~~~~v~~~~~~~~~~~~~~~~~D~iv  105 (316)
T d1oria_          32 FKDKVVLDVGSGT-GILCMFAAK---AGARKVIGIECSSI-SDYAVKIVKANK-LDHVVTIIKGKVEEVELPVEKVDIII  105 (316)
T ss_dssp             HTTCEEEEETCTT-SHHHHHHHH---TTCSEEEEEECSTT-HHHHHHHHHHTT-CTTTEEEEESCTTTCCCSSSCEEEEE
T ss_pred             CCcCEEEEEecCC-cHHHHHHHH---hCCCEEEEEcCcHH-HhhhhhHHHHhC-CccccceEeccHHHcccccceeEEEe
Confidence            4689999999996 667788888   45 47999999976 578888888899 78999999999998877667899997


Q ss_pred             hhhhc--cCChhHHHHHHHHHHhhccCCcEEEE
Q 042119          208 LAALV--GMSKEEKLTILGHIRKYMKDGGILLV  238 (286)
Q Consensus       208 ~aalv--g~~~~~k~~vl~~l~~~l~pgg~lv~  238 (286)
                      ..-+.  .........++..+.+.|+|||.++-
T Consensus       106 s~~~~~~l~~e~~~~~~l~~~~r~Lkp~G~iiP  138 (316)
T d1oria_         106 SEWMGYCLFYESMLNTVLHARDKWLAPDGLIFP  138 (316)
T ss_dssp             ECCCBBTBTBTCCHHHHHHHHHHHEEEEEEEES
T ss_pred             eeeeeeeeccHHHHHHHHHHHHhcCCCCeEEEe
Confidence            54222  11223466899999999999999874

>d2as0a2 c.66.1.51 (A:73-396) Hypothetical protein PH1915, middle and C-terminal domains {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: hypothetical RNA methyltransferase
domain: Hypothetical protein PH1915, middle and C-terminal domains
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=99.26  E-value=1.6e-11  Score=112.10  Aligned_cols=110  Identities=22%  Similarity=0.160  Sum_probs=85.8

Q ss_pred             CCCCCCEEEEeccCCChhhHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEccccchhhc----CCC
Q 042119          127 GVVQPKKVAFVGSGPMPLTSIIMAKHHLTSTHFDNFDIDEAANDVARSIVASDAEFEGRMKFLTRDIMEVKEQ----LGE  202 (286)
Q Consensus       127 ~~~~~~~VL~IG~G~lp~tai~lA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~g~l~~~i~f~~~D~~~~~~~----l~~  202 (286)
                      ..+++++||++|||++++| +.+|+.  ...+|+++|+|+++++.|+++++..| +.++++|+++|+.+....    -..
T Consensus       142 ~~~~g~~VLDl~~g~G~~s-i~~a~~--ga~~V~~vD~s~~al~~a~~N~~~ng-l~~~~~~~~~d~~~~~~~~~~~~~~  217 (324)
T d2as0a2         142 WVQPGDRVLDVFTYTGGFA-IHAAIA--GADEVIGIDKSPRAIETAKENAKLNG-VEDRMKFIVGSAFEEMEKLQKKGEK  217 (324)
T ss_dssp             GCCTTCEEEETTCTTTHHH-HHHHHT--TCSEEEEEESCHHHHHHHHHHHHHTT-CGGGEEEEESCHHHHHHHHHHTTCC
T ss_pred             hcCCCCeeecccCcccchh-hhhhhc--CCcEEEeecCCHHHHHHHHHHHHHcC-CCccceeeechhhhhhHHHHhccCC
Confidence            3478999999999986655 566661  23489999999999999999999999 788999999999775432    247


Q ss_pred             cceeehhhhc-cCC-------hhHHHHHHHHHHhhccCCcEEEEee
Q 042119          203 YDCIFLAALV-GMS-------KEEKLTILGHIRKYMKDGGILLVRS  240 (286)
Q Consensus       203 fD~V~~aalv-g~~-------~~~k~~vl~~l~~~l~pgg~lv~r~  240 (286)
                      ||+|+++.-- ...       ...+.+++....+.|+|||+|++-+
T Consensus       218 fD~Vi~DpP~~~~~~~~~~~~~~~y~~l~~~a~~ll~pGG~lv~~s  263 (324)
T d2as0a2         218 FDIVVLDPPAFVQHEKDLKAGLRAYFNVNFAGLNLVKDGGILVTCS  263 (324)
T ss_dssp             EEEEEECCCCSCSSGGGHHHHHHHHHHHHHHHHTTEEEEEEEEEEE
T ss_pred             CCchhcCCccccCCHHHHHHHHHHHHHHHHHHHHHcCCCcEEEEEe
Confidence            9999976421 111       1235668888999999999999865

>d1wxxa2 c.66.1.51 (A:65-382) Hypothetical protein TTHA1280, middle and C-terminal domains {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: hypothetical RNA methyltransferase
domain: Hypothetical protein TTHA1280, middle and C-terminal domains
species: Thermus thermophilus [TaxId: 274]

Probab=99.26  E-value=7.1e-12  Score=114.23  Aligned_cols=106  Identities=16%  Similarity=0.137  Sum_probs=85.2

Q ss_pred             CCCCEEEEeccCCChhhHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEccccchhhc----CCCcc
Q 042119          129 VQPKKVAFVGSGPMPLTSIIMAKHHLTSTHFDNFDIDEAANDVARSIVASDAEFEGRMKFLTRDIMEVKEQ----LGEYD  204 (286)
Q Consensus       129 ~~~~~VL~IG~G~lp~tai~lA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~g~l~~~i~f~~~D~~~~~~~----l~~fD  204 (286)
                      .++++||+++||+++++ +.+|+   .+++|+++|+|+.+++.|+++++..| + ++++|+++|+.++...    -..||
T Consensus       144 ~~g~rVLDl~~gtG~~s-~~~a~---g~~~V~~vD~s~~al~~a~~n~~~ng-l-~~~~~i~~d~~~~~~~~~~~~~~fD  217 (318)
T d1wxxa2         144 FRGERALDVFSYAGGFA-LHLAL---GFREVVAVDSSAEALRRAEENARLNG-L-GNVRVLEANAFDLLRRLEKEGERFD  217 (318)
T ss_dssp             CCEEEEEEETCTTTHHH-HHHHH---HEEEEEEEESCHHHHHHHHHHHHHTT-C-TTEEEEESCHHHHHHHHHHTTCCEE
T ss_pred             hCCCeeeccCCCCcHHH-HHHHh---cCCcEEeecchHHHHHHHHHHHHHcC-C-CCcceeeccHHHHhhhhHhhhcCCC
Confidence            46899999999997775 67776   68899999999999999999999999 5 6799999999876432    24799


Q ss_pred             eeehhhhc-cCC-------hhHHHHHHHHHHhhccCCcEEEEee
Q 042119          205 CIFLAALV-GMS-------KEEKLTILGHIRKYMKDGGILLVRS  240 (286)
Q Consensus       205 ~V~~aalv-g~~-------~~~k~~vl~~l~~~l~pgg~lv~r~  240 (286)
                      +|+++.-- +..       .....+++....+.|+|||+|++-+
T Consensus       218 ~Vi~DpP~~~~~~~~~~~~~~~~~~l~~~a~~lLkpGG~Lv~~s  261 (318)
T d1wxxa2         218 LVVLDPPAFAKGKKDVERAYRAYKEVNLRAIKLLKEGGILATAS  261 (318)
T ss_dssp             EEEECCCCSCCSTTSHHHHHHHHHHHHHHHHHTEEEEEEEEEEE
T ss_pred             EEEEcCCccccchHHHHHHHHHHHHHHHHHHHHcCCCCEEEEEe
Confidence            99976321 100       1334578899999999999999976

>d2fyta1 c.66.1.6 (A:238-548) Protein arginine N-methyltransferase 3, PRMT3 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Arginine methyltransferase
domain: Protein arginine N-methyltransferase 3, PRMT3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.23  E-value=1.7e-11  Score=110.50  Aligned_cols=105  Identities=22%  Similarity=0.250  Sum_probs=81.7

Q ss_pred             CCCCCEEEEeccCCChhhHHHHHhhcCCC-cEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEccccchhhcCCCccee
Q 042119          128 VVQPKKVAFVGSGPMPLTSIIMAKHHLTS-THFDNFDIDEAANDVARSIVASDAEFEGRMKFLTRDIMEVKEQLGEYDCI  206 (286)
Q Consensus       128 ~~~~~~VL~IG~G~lp~tai~lA~~~~~g-~~V~~iDid~~ai~~Ar~~~~~~g~l~~~i~f~~~D~~~~~~~l~~fD~V  206 (286)
                      ..++++|||||||+ |.-++.+|+   .| .+|+++|.++.+. .|++.+++.| ..++|+++++|+.++..+...||+|
T Consensus        33 ~~~~~~VLDiGcG~-G~lsl~aa~---~Ga~~V~aid~s~~~~-~a~~~~~~~~-~~~~i~~~~~~~~~l~~~~~~~D~I  106 (311)
T d2fyta1          33 IFKDKVVLDVGCGT-GILSMFAAK---AGAKKVLGVDQSEILY-QAMDIIRLNK-LEDTITLIKGKIEEVHLPVEKVDVI  106 (311)
T ss_dssp             GTTTCEEEEETCTT-SHHHHHHHH---TTCSEEEEEESSTHHH-HHHHHHHHTT-CTTTEEEEESCTTTSCCSCSCEEEE
T ss_pred             cCCcCEEEEECCCC-CHHHHHHHH---cCCCEEEEEeCHHHHH-HHHHHHHHhC-CCccceEEEeeHHHhcCccccceEE
Confidence            35789999999995 666788888   45 4899999999876 5677778888 7899999999999987776789999


Q ss_pred             ehhhhc--cCChhHHHHHHHHHHhhccCCcEEEE
Q 042119          207 FLAALV--GMSKEEKLTILGHIRKYMKDGGILLV  238 (286)
Q Consensus       207 ~~aalv--g~~~~~k~~vl~~l~~~l~pgg~lv~  238 (286)
                      +...+-  +........++....+.|+|||+++-
T Consensus       107 vse~~~~~~~~e~~~~~~~~a~~~~Lkp~G~iip  140 (311)
T d2fyta1         107 ISEWMGYFLLFESMLDSVLYAKNKYLAKGGSVYP  140 (311)
T ss_dssp             EECCCBTTBTTTCHHHHHHHHHHHHEEEEEEEES
T ss_pred             EEeeeeeecccccccHHHHHHHHhcCCCCcEEec
Confidence            853221  11223445677778889999999874

>d2esra1 c.66.1.46 (A:28-179) Putative methyltransferase SPy1538 {Streptococcus pyogenes [TaxId: 1314]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: YhhF-like
domain: Putative methyltransferase SPy1538
species: Streptococcus pyogenes [TaxId: 1314]

Probab=99.23  E-value=1.6e-11  Score=100.11  Aligned_cols=106  Identities=12%  Similarity=0.175  Sum_probs=82.7

Q ss_pred             CCCCEEEEeccCCChhhHHHHHhhcCCC-cEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEccccchhh-cCCCccee
Q 042119          129 VQPKKVAFVGSGPMPLTSIIMAKHHLTS-THFDNFDIDEAANDVARSIVASDAEFEGRMKFLTRDIMEVKE-QLGEYDCI  206 (286)
Q Consensus       129 ~~~~~VL~IG~G~lp~tai~lA~~~~~g-~~V~~iDid~~ai~~Ar~~~~~~g~l~~~i~f~~~D~~~~~~-~l~~fD~V  206 (286)
                      -.+++|||+|||++.++. ..+.   .| .+|+++|+|+++++.+++.++..| +.++++++++|+.+... ..+.||+|
T Consensus        13 ~~g~~vlDl~~GtG~~~i-ea~~---rga~~v~~ve~~~~a~~~~~~n~~~~~-~~~~~~ii~~D~~~~l~~~~~~fDiI   87 (152)
T d2esra1          13 FNGGRVLDLFAGSGGLAI-EAVS---RGMSAAVLVEKNRKAQAIIQDNIIMTK-AENRFTLLKMEAERAIDCLTGRFDLV   87 (152)
T ss_dssp             CCSCEEEEETCTTCHHHH-HHHH---TTCCEEEEECCCHHHHHHHHHHHHTTT-CGGGEEEECSCHHHHHHHBCSCEEEE
T ss_pred             CCCCeEEEcCCccCHHHH-HHHH---hCcceeeeehhchhhhhhhhhhhhhcc-cccchhhhccccccccccccccccee
Confidence            368999999999866654 3444   34 499999999999999999999999 78899999999988644 33579999


Q ss_pred             ehhhhccCChhHHHHHHHHHHh--hccCCcEEEEeec
Q 042119          207 FLAALVGMSKEEKLTILGHIRK--YMKDGGILLVRSA  241 (286)
Q Consensus       207 ~~aalvg~~~~~k~~vl~~l~~--~l~pgg~lv~r~~  241 (286)
                      |++--  .........++.+..  .|+|||.+++...
T Consensus        88 f~DPP--y~~~~~~~~l~~i~~~~~L~~~g~iiiE~~  122 (152)
T d2esra1          88 FLDPP--YAKETIVATIEALAAKNLLSEQVMVVCETD  122 (152)
T ss_dssp             EECCS--SHHHHHHHHHHHHHHTTCEEEEEEEEEEEE
T ss_pred             Eechh--hccchHHHHHHHHHHCCCcCCCeEEEEEeC
Confidence            98731  112455667777754  5999999998753

>d2frna1 c.66.1.47 (A:19-278) Hypothetical protein PH0793 {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Met-10+ protein-like
domain: Hypothetical protein PH0793
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=99.20  E-value=1.5e-11  Score=109.05  Aligned_cols=102  Identities=16%  Similarity=0.094  Sum_probs=83.4

Q ss_pred             CCCCCEEEEeccCCChhhHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEccccchhhcCCCcceee
Q 042119          128 VVQPKKVAFVGSGPMPLTSIIMAKHHLTSTHFDNFDIDEAANDVARSIVASDAEFEGRMKFLTRDIMEVKEQLGEYDCIF  207 (286)
Q Consensus       128 ~~~~~~VL~IG~G~lp~tai~lA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~g~l~~~i~f~~~D~~~~~~~l~~fD~V~  207 (286)
                      .+++.+|||+|||.+++ ++.+|++  .+++|+++|+||++++.++++++..| ++++++++++|+.++... ..||.|+
T Consensus       105 ~~~g~~VlD~~aG~G~~-~l~~a~~--~~~~V~avd~n~~a~~~~~~N~~~n~-l~~~v~~~~~D~~~~~~~-~~~D~Ii  179 (260)
T d2frna1         105 AKPDELVVDMFAGIGHL-SLPIAVY--GKAKVIAIEKDPYTFKFLVENIHLNK-VEDRMSAYNMDNRDFPGE-NIADRIL  179 (260)
T ss_dssp             CCTTCEEEETTCTTTTT-HHHHHHH--TCCEEEEECCCHHHHHHHHHHHHHTT-CTTTEEEECSCTTTCCCC-SCEEEEE
T ss_pred             cCCccEEEECcceEcHH-HHHHHHh--CCcEEEEecCCHHHHHHHHHHHHHhC-CCceEEEEEcchHHhccC-CCCCEEE
Confidence            47899999999997655 4677773  55799999999999999999999999 789999999999886643 4699988


Q ss_pred             hhhhccCChhHHHHHHHHHHhhccCCcEEEEe
Q 042119          208 LAALVGMSKEEKLTILGHIRKYMKDGGILLVR  239 (286)
Q Consensus       208 ~aalvg~~~~~k~~vl~~l~~~l~pgg~lv~r  239 (286)
                      +.-.     ....++++...+.++|||.+.+.
T Consensus       180 ~~~p-----~~~~~~l~~a~~~l~~gG~lh~~  206 (260)
T d2frna1         180 MGYV-----VRTHEFIPKALSIAKDGAIIHYH  206 (260)
T ss_dssp             ECCC-----SSGGGGHHHHHHHEEEEEEEEEE
T ss_pred             ECCC-----CchHHHHHHHHhhcCCCCEEEEE
Confidence            6422     22346788889999999998664

>d2b3ta1 c.66.1.30 (A:2-275) N5-glutamine methyltransferase, HemK {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: N5-glutamine methyltransferase, HemK
domain: N5-glutamine methyltransferase, HemK
species: Escherichia coli [TaxId: 562]

Probab=99.19  E-value=5.8e-11  Score=106.18  Aligned_cols=109  Identities=18%  Similarity=0.233  Sum_probs=83.9

Q ss_pred             CCCCCCEEEEeccCCChhhHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEccccchhhcCCCccee
Q 042119          127 GVVQPKKVAFVGSGPMPLTSIIMAKHHLTSTHFDNFDIDEAANDVARSIVASDAEFEGRMKFLTRDIMEVKEQLGEYDCI  206 (286)
Q Consensus       127 ~~~~~~~VL~IG~G~lp~tai~lA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~g~l~~~i~f~~~D~~~~~~~l~~fD~V  206 (286)
                      ....+.+|||+|||++. -++.+|+ ..|.++|+++|+|++|++.|++++++.| + ++++|+++|..+...+ ..||+|
T Consensus       105 ~~~~~~~vlDlGtGSG~-I~i~la~-~~p~~~v~avDis~~Al~~A~~Na~~~~-~-~~v~~~~~d~~~~~~~-~~fDlI  179 (274)
T d2b3ta1         105 LPEQPCRILDLGTGTGA-IALALAS-ERPDCEIIAVDRMPDAVSLAQRNAQHLA-I-KNIHILQSDWFSALAG-QQFAMI  179 (274)
T ss_dssp             SCSSCCEEEEETCTTSH-HHHHHHH-HCTTSEEEEECSSHHHHHHHHHHHHHHT-C-CSEEEECCSTTGGGTT-CCEEEE
T ss_pred             hcccccceeeeehhhhH-HHHHHHh-hCCcceeeeccchhHHHhHHHHHHHHhC-c-ccceeeecccccccCC-CceeEE
Confidence            34677899999999754 4666777 4899999999999999999999999999 4 6799999998764322 479998


Q ss_pred             ehhh----------------------hccCC--hhHHHHHHHHHHhhccCCcEEEEee
Q 042119          207 FLAA----------------------LVGMS--KEEKLTILGHIRKYMKDGGILLVRS  240 (286)
Q Consensus       207 ~~aa----------------------lvg~~--~~~k~~vl~~l~~~l~pgg~lv~r~  240 (286)
                      +..-                      +.|.+  .....+++++..++|+|||.+++--
T Consensus       180 vsNPPYi~~~~~~~~~~v~~~eP~~AL~~g~dGl~~~~~i~~~a~~~L~~~G~l~lEi  237 (274)
T d2b3ta1         180 VSNPPYIDEQDPHLQQGDVRFEPLTALVAADSGMADIVHIIEQSRNALVSGGFLLLEH  237 (274)
T ss_dssp             EECCCCBCTTCHHHHSSGGGSSCSTTTBCHHHHTHHHHHHHHHHGGGEEEEEEEEEEC
T ss_pred             EecchhhhhhhhcccccccccchhhhcccccccchHHHHHHHHHHHhcCCCCEEEEEE
Confidence            6431                      11000  0234578999999999999999953

>d1r18a_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Protein-L-isoaspartyl O-methyltransferase
domain: Protein-L-isoaspartyl O-methyltransferase
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.18  E-value=1.7e-11  Score=106.48  Aligned_cols=104  Identities=14%  Similarity=0.148  Sum_probs=80.2

Q ss_pred             CCCCCCEEEEeccCCChhhHHHHHhhc-----CCCcEEEEEeCChHHHHHHHHHHHhcCCC----CCCeEEEEccccchh
Q 042119          127 GVVQPKKVAFVGSGPMPLTSIIMAKHH-----LTSTHFDNFDIDEAANDVARSIVASDAEF----EGRMKFLTRDIMEVK  197 (286)
Q Consensus       127 ~~~~~~~VL~IG~G~lp~tai~lA~~~-----~~g~~V~~iDid~~ai~~Ar~~~~~~g~l----~~~i~f~~~D~~~~~  197 (286)
                      .++++.+||+||||+ |+.+.++|+..     .++.+|++||++++.++.|++++.+.+ +    -.++.+.++|+.+-.
T Consensus        77 ~l~~g~~VLeIGtGs-GY~ta~la~l~g~~g~~~~~~V~~iE~~~~l~~~a~~~l~~~~-~~~~~~~nv~~~~~d~~~~~  154 (223)
T d1r18a_          77 HLKPGARILDVGSGS-GYLTACFYRYIKAKGVDADTRIVGIEHQAELVRRSKANLNTDD-RSMLDSGQLLIVEGDGRKGY  154 (223)
T ss_dssp             TCCTTCEEEEESCTT-SHHHHHHHHHHHHSCCCTTCEEEEEESCHHHHHHHHHHHHHHH-HHHHHHTSEEEEESCGGGCC
T ss_pred             ccCCCCeEEEecCCC-CHHHHHHHHHhhhccCCcccEEEEEecCHHHHHHHHHhhhhcc-hhhcCccEEEEEeccccccc
Confidence            468899999999995 77777787731     245699999999999999999876543 1    158999999997755


Q ss_pred             hcCCCcceeehhhhccCChhHHHHHHHHHHhhccCCcEEEEe
Q 042119          198 EQLGEYDCIFLAALVGMSKEEKLTILGHIRKYMKDGGILLVR  239 (286)
Q Consensus       198 ~~l~~fD~V~~aalvg~~~~~k~~vl~~l~~~l~pgg~lv~r  239 (286)
                      .+.+.||.|++.+.+..       +-+.+.+.|+|||++++-
T Consensus       155 ~~~~~fD~Iiv~~a~~~-------~p~~l~~~Lk~gG~lV~p  189 (223)
T d1r18a_         155 PPNAPYNAIHVGAAAPD-------TPTELINQLASGGRLIVP  189 (223)
T ss_dssp             GGGCSEEEEEECSCBSS-------CCHHHHHTEEEEEEEEEE
T ss_pred             ccccceeeEEEEeechh-------chHHHHHhcCCCcEEEEE
Confidence            55568999998766521       123467899999999874

>d1u2za_ c.66.1.31 (A:) Catalytic, N-terminal domain of histone methyltransferase Dot1l {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Catalytic, N-terminal domain of histone methyltransferase Dot1l
domain: Catalytic, N-terminal domain of histone methyltransferase Dot1l
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.14  E-value=1.9e-10  Score=108.01  Aligned_cols=118  Identities=14%  Similarity=0.098  Sum_probs=83.5

Q ss_pred             HHHHHHhcCCCCCCEEEEeccCCChhhHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcC-------CCCCCeEE-EE
Q 042119          119 EYTILSENGVVQPKKVAFVGSGPMPLTSIIMAKHHLTSTHFDNFDIDEAANDVARSIVASDA-------EFEGRMKF-LT  190 (286)
Q Consensus       119 E~~~l~~~~~~~~~~VL~IG~G~lp~tai~lA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~g-------~l~~~i~f-~~  190 (286)
                      -...+.+..++++++|+|||||. |-.++.+|+. .+.++|+|||+++.+++.|++.++..+       .-...+.+ ..
T Consensus       205 i~~Il~~l~Lkpgd~fLDLGCG~-G~~vl~aA~~-~g~~~v~GIDiS~~~i~~Ak~~~~e~~~~~~~~g~~~~~~~~~~~  282 (406)
T d1u2za_         205 LSDVYQQCQLKKGDTFMDLGSGV-GNCVVQAALE-CGCALSFGCEIMDDASDLTILQYEELKKRCKLYGMRLNNVEFSLK  282 (406)
T ss_dssp             HHHHHHHTTCCTTCEEEEESCTT-SHHHHHHHHH-HCCSEEEEEECCHHHHHHHHHHHHHHHHHHHHTTBCCCCEEEEES
T ss_pred             HHHHHHHhCCCCCCEEEeCCCCC-cHHHHHHHHH-cCCCeEEEEeCCHHHHHHHHHHHHHHhhhhhhhccccccceeeee
Confidence            34456677889999999999995 6667778773 445699999999999999999887643       10122333 23


Q ss_pred             ccccch---hhcCCCcceeehhhhccCChhHHHHHHHHHHhhccCCcEEEEee
Q 042119          191 RDIMEV---KEQLGEYDCIFLAALVGMSKEEKLTILGHIRKYMKDGGILLVRS  240 (286)
Q Consensus       191 ~D~~~~---~~~l~~fD~V~~aalvg~~~~~k~~vl~~l~~~l~pgg~lv~r~  240 (286)
                      ++..+.   ...+..+|+|++....  ..++....|.++.+.|||||++++..
T Consensus       283 ~~f~~~~~~d~~~~~adVV~inn~~--f~~~l~~~L~ei~r~LKPGGrIVs~~  333 (406)
T d1u2za_         283 KSFVDNNRVAELIPQCDVILVNNFL--FDEDLNKKVEKILQTAKVGCKIISLK  333 (406)
T ss_dssp             SCSTTCHHHHHHGGGCSEEEECCTT--CCHHHHHHHHHHHTTCCTTCEEEESS
T ss_pred             echhhccccccccccceEEEEeccc--CchHHHHHHHHHHHhcCCCcEEEEec
Confidence            333221   2234568899876543  23677789999999999999998753

>d1m6ya2 c.66.1.23 (A:2-114,A:216-294) TM0872, methyltransferase domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: MraW-like putative methyltransferases
domain: TM0872, methyltransferase domain
species: Thermotoga maritima [TaxId: 2336]

Probab=99.13  E-value=1.2e-10  Score=98.82  Aligned_cols=112  Identities=15%  Similarity=0.146  Sum_probs=90.8

Q ss_pred             CCCCCCEEEEeccCCChhhHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEccccchhh-----cCC
Q 042119          127 GVVQPKKVAFVGSGPMPLTSIIMAKHHLTSTHFDNFDIDEAANDVARSIVASDAEFEGRMKFLTRDIMEVKE-----QLG  201 (286)
Q Consensus       127 ~~~~~~~VL~IG~G~lp~tai~lA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~g~l~~~i~f~~~D~~~~~~-----~l~  201 (286)
                      .+.++..++|++||++|.|...+.+  +++++|+|+|+|++|++.|++.++..+   +++++++++..++..     ..+
T Consensus        20 ~~~~~~~~lD~t~G~Gghs~~il~~--~~~~~vi~~D~d~~~l~~a~~~l~~~~---~r~~~~~~~f~~~~~~~~~~~~~   94 (192)
T d1m6ya2          20 KPEDEKIILDCTVGEGGHSRAILEH--CPGCRIIGIDVDSEVLRIAEEKLKEFS---DRVSLFKVSYREADFLLKTLGIE   94 (192)
T ss_dssp             CCCTTCEEEETTCTTSHHHHHHHHH--CTTCEEEEEESCHHHHHHHHHHTGGGT---TTEEEEECCGGGHHHHHHHTTCS
T ss_pred             CCCCCCEEEEecCCCcHHHHHHHhc--CCCCeEEEeechHHHHHHHHHhhcccc---ccccchhHHHhhHHHHHHHcCCC
Confidence            6788999999999999998877766  689999999999999999999988766   689999998776532     235


Q ss_pred             CcceeehhhhccC--------ChhHHHHHHHHHHhhccCCcEEEEeecCc
Q 042119          202 EYDCIFLAALVGM--------SKEEKLTILGHIRKYMKDGGILLVRSAKG  243 (286)
Q Consensus       202 ~fD~V~~aalvg~--------~~~~k~~vl~~l~~~l~pgg~lv~r~~~g  243 (286)
                      .||.|+++..+..        ......+.|....+.|+|||.+++-+.|.
T Consensus        95 ~vdgIl~DlGvSs~Qld~~~r~~~~~~~~L~~a~~~Lk~gG~l~ii~f~s  144 (192)
T d1m6ya2          95 KVDGILMDLGVSTYQLKGENRELENLKEFLKKAEDLLNPGGRIVVISFHS  144 (192)
T ss_dssp             CEEEEEEECSCCHHHHHTSHTHHHHHHHHHHHGGGGEEEEEEEEEEESSH
T ss_pred             CcceeeeccchhHhhhhhhhccchhHHHHHHHHHHhcCCCCeeeeecccc
Confidence            7999987743310        22456689999999999999999877543

>d1mjfa_ c.66.1.17 (A:) Putative spermidine synthetase PF0127 (SpeE) {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Putative spermidine synthetase PF0127 (SpeE)
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=99.12  E-value=8.4e-11  Score=105.07  Aligned_cols=109  Identities=17%  Similarity=0.202  Sum_probs=84.2

Q ss_pred             CCCCEEEEeccCCChhhHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcC--------CCCCCeEEEEccccchhhcC
Q 042119          129 VQPKKVAFVGSGPMPLTSIIMAKHHLTSTHFDNFDIDEAANDVARSIVASDA--------EFEGRMKFLTRDIMEVKEQL  200 (286)
Q Consensus       129 ~~~~~VL~IG~G~lp~tai~lA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~g--------~l~~~i~f~~~D~~~~~~~l  200 (286)
                      ..|++||.||+|. |.++..+.+  .+..+|+.+||||+.++.|++.+....        .-.+|++++.+|+.+....-
T Consensus        71 ~~p~~vLiiG~G~-G~~~~~~l~--~~~~~v~~VEiD~~Vi~~a~~~f~~~~~~~~~~~~~~d~rv~i~~~Da~~~l~~~  147 (276)
T d1mjfa_          71 PKPKRVLVIGGGD-GGTVREVLQ--HDVDEVIMVEIDEDVIMVSKDLIKIDNGLLEAMLNGKHEKAKLTIGDGFEFIKNN  147 (276)
T ss_dssp             SCCCEEEEEECTT-SHHHHHHTT--SCCSEEEEEESCHHHHHHHHHHTCTTTTHHHHHHTTCCSSEEEEESCHHHHHHHC
T ss_pred             CCCceEEEecCCc-hHHHHHHHH--hCCceEEEecCCHHHHHHHHHhhhhccchhhhhhccCCCCceEEEChHHHHHhcc
Confidence            6789999999995 667666666  356799999999999999998753211        02479999999998877666


Q ss_pred             CCcceeehhhhccCChhH---HHHHHHHHHhhccCCcEEEEee
Q 042119          201 GEYDCIFLAALVGMSKEE---KLTILGHIRKYMKDGGILLVRS  240 (286)
Q Consensus       201 ~~fD~V~~aalvg~~~~~---k~~vl~~l~~~l~pgg~lv~r~  240 (286)
                      +.||+|+++..-+.....   ..++++.+.++|+|||++++..
T Consensus       148 ~~yDvIi~D~~~~~~~~~~L~t~eF~~~~~~~L~~~Gv~v~q~  190 (276)
T d1mjfa_         148 RGFDVIIADSTDPVGPAKVLFSEEFYRYVYDALNNPGIYVTQA  190 (276)
T ss_dssp             CCEEEEEEECCCCC-----TTSHHHHHHHHHHEEEEEEEEEEE
T ss_pred             CCCCEEEEeCCCCCCCcccccCHHHHHhhHhhcCCCceEEEec
Confidence            789999988654322222   1579999999999999999875

>d1jqea_ c.66.1.19 (A:) Histamine methyltransferase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Histamine methyltransferase
domain: Histamine methyltransferase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.09  E-value=1.1e-10  Score=102.98  Aligned_cols=109  Identities=12%  Similarity=0.147  Sum_probs=75.1

Q ss_pred             CCCCEEEEeccCCChhhHHHHHhh---cCC--CcEEEEEeCChHHHHHHHHHHHhcCCCCCCeE--EEEccccch-----
Q 042119          129 VQPKKVAFVGSGPMPLTSIIMAKH---HLT--STHFDNFDIDEAANDVARSIVASDAEFEGRMK--FLTRDIMEV-----  196 (286)
Q Consensus       129 ~~~~~VL~IG~G~lp~tai~lA~~---~~~--g~~V~~iDid~~ai~~Ar~~~~~~g~l~~~i~--f~~~D~~~~-----  196 (286)
                      +++.+||+||||++.++.. +++.   .++  +.+++|||+|+.+++.|++.++... --..+.  +...++.+.     
T Consensus        39 ~~~~~VLDiGcG~G~~~~~-ll~~l~~~~~~~~~~~~~vD~s~~~l~~a~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~  116 (280)
T d1jqea_          39 KSEIKILSIGGGAGEIDLQ-ILSKVQAQYPGVCINNEVVEPSAEQIAKYKELVAKIS-NLENVKFAWHKETSSEYQSRML  116 (280)
T ss_dssp             CSEEEEEEETCTTSHHHHH-HHHHHHHHSTTCEEEEEEECCCHHHHHHHHHHHTTCC-SCTTEEEEEECSCHHHHHHHHT
T ss_pred             CCCCeEEEEcCCCCHHHHH-HHHHhhhhccCCceEEEEEeCcHHHHHHHHHHHhhcc-ccccccccchhhhhhhhcchhc
Confidence            4445899999998655544 4331   123  4578999999999999999987654 224454  445554332     


Q ss_pred             -hhcCCCcceeehhhhccCChhHHHHHHHHHHhhccCCcEEEEee
Q 042119          197 -KEQLGEYDCIFLAALVGMSKEEKLTILGHIRKYMKDGGILLVRS  240 (286)
Q Consensus       197 -~~~l~~fD~V~~aalvg~~~~~k~~vl~~l~~~l~pgg~lv~r~  240 (286)
                       ..+.+.||+|+....+.+ .++..++++++.+.|+|||.+++..
T Consensus       117 ~~~~~~~fD~I~~~~~l~~-~~d~~~~l~~l~~~LkpgG~l~i~~  160 (280)
T d1jqea_         117 EKKELQKWDFIHMIQMLYY-VKDIPATLKFFHSLLGTNAKMLIIV  160 (280)
T ss_dssp             TSSSCCCEEEEEEESCGGG-CSCHHHHHHHHHHTEEEEEEEEEEE
T ss_pred             ccCCCCceeEEEEccceec-CCCHHHHHHHHHhhCCCCCEEEEEE
Confidence             123357999986554422 2466789999999999999887764

>d2b78a2 c.66.1.51 (A:69-385) Hypothetical protein SMu776, middle and C-terminal domains {Streptococcus mutans [TaxId: 1309]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: hypothetical RNA methyltransferase
domain: Hypothetical protein SMu776, middle and C-terminal domains
species: Streptococcus mutans [TaxId: 1309]

Probab=99.08  E-value=2e-10  Score=104.53  Aligned_cols=108  Identities=9%  Similarity=0.168  Sum_probs=84.8

Q ss_pred             CCCCCEEEEeccCCChhhHHHHHhhcCCCc-EEEEEeCChHHHHHHHHHHHhcCCCC-CCeEEEEccccchhhc----CC
Q 042119          128 VVQPKKVAFVGSGPMPLTSIIMAKHHLTST-HFDNFDIDEAANDVARSIVASDAEFE-GRMKFLTRDIMEVKEQ----LG  201 (286)
Q Consensus       128 ~~~~~~VL~IG~G~lp~tai~lA~~~~~g~-~V~~iDid~~ai~~Ar~~~~~~g~l~-~~i~f~~~D~~~~~~~----l~  201 (286)
                      ..++++||++.||++++| +..|+   .|+ +|+++|+|+.++++|+++++..| ++ ++++|+++|+.+....    -.
T Consensus       142 ~~~g~~VLdlf~~~G~~s-l~aa~---~ga~~V~~vD~s~~a~~~a~~N~~~n~-l~~~~~~~i~~d~~~~l~~~~~~~~  216 (317)
T d2b78a2         142 SAAGKTVLNLFSYTAAFS-VAAAM---GGAMATTSVDLAKRSRALSLAHFEANH-LDMANHQLVVMDVFDYFKYARRHHL  216 (317)
T ss_dssp             TTBTCEEEEETCTTTHHH-HHHHH---TTBSEEEEEESCTTHHHHHHHHHHHTT-CCCTTEEEEESCHHHHHHHHHHTTC
T ss_pred             hhCCCceeecCCCCcHHH-HHHHh---CCCceEEEecCCHHHHHHHHHHHHHhc-ccCcceEEEEccHHHHHHHHHhhcC
Confidence            467899999999998776 55555   455 79999999999999999999988 54 6899999999776432    23


Q ss_pred             Ccceeehhhhc-cC-------ChhHHHHHHHHHHhhccCCcEEEEee
Q 042119          202 EYDCIFLAALV-GM-------SKEEKLTILGHIRKYMKDGGILLVRS  240 (286)
Q Consensus       202 ~fD~V~~aalv-g~-------~~~~k~~vl~~l~~~l~pgg~lv~r~  240 (286)
                      .||+|+++--. +.       ...+..+++....+.|+|||+|++-+
T Consensus       217 ~fD~Ii~DPP~f~~~~~~~~~~~~~~~~L~~~a~~ll~pgG~l~~~s  263 (317)
T d2b78a2         217 TYDIIIIDPPSFARNKKEVFSVSKDYHKLIRQGLEILSENGLIIAST  263 (317)
T ss_dssp             CEEEEEECCCCC-----CCCCHHHHHHHHHHHHHHTEEEEEEEEEEE
T ss_pred             CCCEEEEcChhhccchhHHHHHHHHHHHHHHHHHHHcCCCCEEEEEe
Confidence            69999986310 00       11345679999999999999999976

>d2igta1 c.66.1.51 (A:1-309) Putative methyltransferase Atu0340 {Agrobacterium tumefaciens [TaxId: 358]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: hypothetical RNA methyltransferase
domain: Putative methyltransferase Atu0340
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=99.07  E-value=2.9e-10  Score=103.17  Aligned_cols=107  Identities=18%  Similarity=0.185  Sum_probs=81.2

Q ss_pred             CCCCEEEEeccCCChhhHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCC-CeEEEEccccchhhc----CCCc
Q 042119          129 VQPKKVAFVGSGPMPLTSIIMAKHHLTSTHFDNFDIDEAANDVARSIVASDAEFEG-RMKFLTRDIMEVKEQ----LGEY  203 (286)
Q Consensus       129 ~~~~~VL~IG~G~lp~tai~lA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~g~l~~-~i~f~~~D~~~~~~~----l~~f  203 (286)
                      ..+.|||+++||++++ ++.+|+   .|++||+||.|+.+++.|+++++..| +.+ +++|+++|+.+....    -..|
T Consensus       131 ~~~~rVLdlf~~tG~~-sl~aa~---~GA~V~~VD~s~~al~~a~~N~~ln~-~~~~~~~~i~~D~~~~l~~~~~~~~~f  205 (309)
T d2igta1         131 DRPLKVLNLFGYTGVA-SLVAAA---AGAEVTHVDASKKAIGWAKENQVLAG-LEQAPIRWICEDAMKFIQREERRGSTY  205 (309)
T ss_dssp             SSCCEEEEETCTTCHH-HHHHHH---TTCEEEEECSCHHHHHHHHHHHHHHT-CTTSCEEEECSCHHHHHHHHHHHTCCB
T ss_pred             cCCCeEEEecCCCcHH-HHHHHh---CCCeEEEEeChHHHHHHHHHhhhhhc-ccCCcEEEEeCCHHHhHHHHhhcCCCC
Confidence            5788999999998655 566776   68999999999999999999999888 554 799999999876542    2479


Q ss_pred             ceeehhh--hc-c-----CC-hhHHHHHHHHHHhhccCCcEEEEee
Q 042119          204 DCIFLAA--LV-G-----MS-KEEKLTILGHIRKYMKDGGILLVRS  240 (286)
Q Consensus       204 D~V~~aa--lv-g-----~~-~~~k~~vl~~l~~~l~pgg~lv~r~  240 (286)
                      |+|+++-  +. +     +. ...+..+++.+.+.++|||.+++-+
T Consensus       206 D~IilDPP~f~~~~~~~~~~~~~~~~~l~~~~~~ll~~~g~~ll~t  251 (309)
T d2igta1         206 DIILTDPPKFGRGTHGEVWQLFDHLPLMLDICREILSPKALGLVLT  251 (309)
T ss_dssp             SEEEECCCSEEECTTCCEEEHHHHHHHHHHHHHHTBCTTCCEEEEE
T ss_pred             CEEEECCCcccccccchhHHHHHHHHHHHHHHHHhcCCCCCEEEEe
Confidence            9999752  11 1     11 1334556677888999998655544

>d1uira_ c.66.1.17 (A:) Spermidine synthase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Spermidine synthase
species: Thermus thermophilus [TaxId: 274]

Probab=99.06  E-value=1.7e-10  Score=104.79  Aligned_cols=110  Identities=22%  Similarity=0.298  Sum_probs=84.9

Q ss_pred             CCCCEEEEeccCCChhhHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhc--CC-CCCCeEEEEccccchhhcC-CCcc
Q 042119          129 VQPKKVAFVGSGPMPLTSIIMAKHHLTSTHFDNFDIDEAANDVARSIVASD--AE-FEGRMKFLTRDIMEVKEQL-GEYD  204 (286)
Q Consensus       129 ~~~~~VL~IG~G~lp~tai~lA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~--g~-l~~~i~f~~~D~~~~~~~l-~~fD  204 (286)
                      ..|++||.||.|. |.++..+.+ +.+..+|+++|+||+.++.|++.+...  +. -..|++++.+|+.+..... +.||
T Consensus        76 ~~pk~VLiiG~G~-G~~~~~ll~-~~~~~~v~~VEiD~~Vi~~a~~~f~~~~~~~~~d~rv~i~~~Da~~~l~~~~~~yD  153 (312)
T d1uira_          76 PEPKRVLIVGGGE-GATLREVLK-HPTVEKAVMVDIDGELVEVAKRHMPEWHQGAFDDPRAVLVIDDARAYLERTEERYD  153 (312)
T ss_dssp             SCCCEEEEEECTT-SHHHHHHTT-STTCCEEEEEESCHHHHHHHHHHCHHHHTTGGGCTTEEEEESCHHHHHHHCCCCEE
T ss_pred             CCcceEEEeCCCc-hHHHHHHHh-cCCcceEEEecCCHHHHHHHHhcCcccccCccCCCceEEEEchHHHHhhhcCCccc
Confidence            6789999999994 667777766 467789999999999999999987542  10 1369999999999876554 3699


Q ss_pred             eeehhhh--ccCChhH----HHHHHHHHHhhccCCcEEEEee
Q 042119          205 CIFLAAL--VGMSKEE----KLTILGHIRKYMKDGGILLVRS  240 (286)
Q Consensus       205 ~V~~aal--vg~~~~~----k~~vl~~l~~~l~pgg~lv~r~  240 (286)
                      +|+++..  .+.....    -.++++.+.++|+|||++++..
T Consensus       154 vIi~D~~dp~~~~~~~~~L~t~eF~~~~~~~L~p~Gvlv~~~  195 (312)
T d1uira_         154 VVIIDLTDPVGEDNPARLLYTVEFYRLVKAHLNPGGVMGMQT  195 (312)
T ss_dssp             EEEEECCCCBSTTCGGGGGSSHHHHHHHHHTEEEEEEEEEEE
T ss_pred             EEEEeCCCcccccchhhhhhhHHHHHHHHHhcCCCceEEEec
Confidence            9998763  2211111    1479999999999999999865

>d1inla_ c.66.1.17 (A:) Spermidine synthase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Spermidine synthase
species: Thermotoga maritima [TaxId: 2336]

Probab=99.04  E-value=3.5e-10  Score=102.04  Aligned_cols=112  Identities=17%  Similarity=0.194  Sum_probs=84.5

Q ss_pred             CCCCEEEEeccCCChhhHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhc--CCCCCCeEEEEccccchhhcCC-Ccce
Q 042119          129 VQPKKVAFVGSGPMPLTSIIMAKHHLTSTHFDNFDIDEAANDVARSIVASD--AEFEGRMKFLTRDIMEVKEQLG-EYDC  205 (286)
Q Consensus       129 ~~~~~VL~IG~G~lp~tai~lA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~--g~l~~~i~f~~~D~~~~~~~l~-~fD~  205 (286)
                      ..|++||.||+|. |.++-.+.+ +.+..+|+++||||+.++.|++.+...  +.-.+|++++.+|+.+.....+ .||+
T Consensus        88 ~~pk~VLiiGgG~-G~~~r~~l~-~~~~~~i~~VEIDp~Vi~~a~~~~~~~~~~~~d~rv~v~~~Da~~~l~~~~~~yDv  165 (295)
T d1inla_          88 PNPKKVLIIGGGD-GGTLREVLK-HDSVEKAILCEVDGLVIEAARKYLKQTSCGFDDPRAEIVIANGAEYVRKFKNEFDV  165 (295)
T ss_dssp             SSCCEEEEEECTT-CHHHHHHTT-STTCSEEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEESCHHHHGGGCSSCEEE
T ss_pred             CCCceEEEecCCc-hHHHHHHHh-cCCCceEEEecCCHHHHHHHHHHHHhhcccccCCCcEEEhhhHHHHHhcCCCCCCE
Confidence            6789999999995 566666766 456789999999999999999986532  1113799999999988776543 6999


Q ss_pred             eehhhhccCChhH----HHHHHHHHHhhccCCcEEEEeecC
Q 042119          206 IFLAALVGMSKEE----KLTILGHIRKYMKDGGILLVRSAK  242 (286)
Q Consensus       206 V~~aalvg~~~~~----k~~vl~~l~~~l~pgg~lv~r~~~  242 (286)
                      |+++..-+...+.    -.++++.+.++|+|||++++....
T Consensus       166 Ii~D~~dp~~~~~~~L~t~efy~~~~~~L~~~Gi~v~q~~s  206 (295)
T d1inla_         166 IIIDSTDPTAGQGGHLFTEEFYQACYDALKEDGVFSAETED  206 (295)
T ss_dssp             EEEEC----------CCSHHHHHHHHHHEEEEEEEEEECCC
T ss_pred             EEEcCCCCCcCchhhhccHHHHHHHHhhcCCCcEEEEecCC
Confidence            9988642211111    257999999999999999998643

>d1ws6a1 c.66.1.46 (A:15-185) Methyltransferase TTHA0928 {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: YhhF-like
domain: Methyltransferase TTHA0928
species: Thermus thermophilus [TaxId: 274]

Probab=99.02  E-value=4.6e-10  Score=93.11  Aligned_cols=106  Identities=14%  Similarity=0.168  Sum_probs=75.0

Q ss_pred             CCCCCEEEEeccCCChhhHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEccccch--hhcCCCcce
Q 042119          128 VVQPKKVAFVGSGPMPLTSIIMAKHHLTSTHFDNFDIDEAANDVARSIVASDAEFEGRMKFLTRDIMEV--KEQLGEYDC  205 (286)
Q Consensus       128 ~~~~~~VL~IG~G~lp~tai~lA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~g~l~~~i~f~~~D~~~~--~~~l~~fD~  205 (286)
                      ...+.+|||+|||++.++ +..++   .|++|+++|+|+++++.++++++..| +.+++.+..+|....  ......||+
T Consensus        39 ~~~g~~vLDl~~G~G~~~-i~a~~---~ga~vv~vD~~~~a~~~~~~N~~~~~-~~~~v~~~~~d~~~~~~~~~~~~fD~  113 (171)
T d1ws6a1          39 YPRRGRFLDPFAGSGAVG-LEAAS---EGWEAVLVEKDPEAVRLLKENVRRTG-LGARVVALPVEVFLPEAKAQGERFTV  113 (171)
T ss_dssp             CTTCCEEEEETCSSCHHH-HHHHH---TTCEEEEECCCHHHHHHHHHHHHHHT-CCCEEECSCHHHHHHHHHHTTCCEEE
T ss_pred             ccCCCeEEEeccccchhh-hhhhh---ccchhhhcccCHHHHhhhhHHHHhhc-cccceeeeehhcccccccccCCccce
Confidence            467889999999986554 55555   68999999999999999999999999 677776666664211  122247999


Q ss_pred             eehhhhccCChhHHHHHHHHHH--hhccCCcEEEEeec
Q 042119          206 IFLAALVGMSKEEKLTILGHIR--KYMKDGGILLVRSA  241 (286)
Q Consensus       206 V~~aalvg~~~~~k~~vl~~l~--~~l~pgg~lv~r~~  241 (286)
                      ||++---+.+.   .+.+..+.  ..++|||++++...
T Consensus       114 If~DPPY~~~~---~~~l~~l~~~~ll~~~g~ivie~~  148 (171)
T d1ws6a1         114 AFMAPPYAMDL---AALFGELLASGLVEAGGLYVLQHP  148 (171)
T ss_dssp             EEECCCTTSCT---THHHHHHHHHTCEEEEEEEEEEEE
T ss_pred             eEEccccccCH---HHHHHHHHHcCCcCCCeEEEEEec
Confidence            99863211111   12333332  47999999998753

>d1wy7a1 c.66.1.32 (A:4-204) Hypothetical protein PH1948 {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Ta1320-like
domain: Hypothetical protein PH1948
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=99.01  E-value=1.9e-09  Score=91.59  Aligned_cols=106  Identities=19%  Similarity=0.160  Sum_probs=73.6

Q ss_pred             hcCCCCcccccccCcCccchhhhhHHHHHHHHhcCCCCCCEEEEeccCCChhhHHHHHhhcCCCcEEEEEeCChHHHHHH
Q 042119           93 LTKIPQPLNNLSLFPYYGNYVKLSKLEYTILSENGVVQPKKVAFVGSGPMPLTSIIMAKHHLTSTHFDNFDIDEAANDVA  172 (286)
Q Consensus        93 l~~~~~p~~~L~~fpy~~ny~~l~~~E~~~l~~~~~~~~~~VL~IG~G~lp~tai~lA~~~~~g~~V~~iDid~~ai~~A  172 (286)
                      +-..++|-..|+.|+=   -..++..=.......+...|++|||+|||++.++ +.+++  ....+|+++|+|+++++.|
T Consensus        12 ~~~f~~~~~~l~qy~T---p~~~a~~~~~~~~~~~dl~g~~vLDlg~GtG~l~-i~a~~--~g~~~v~~vdi~~~~~~~a   85 (201)
T d1wy7a1          12 LKGFKNPKVWLEQYRT---PGNAASELLWLAYSLGDIEGKVVADLGAGTGVLS-YGALL--LGAKEVICVEVDKEAVDVL   85 (201)
T ss_dssp             SCCCSSCCGGGTCCCC---CHHHHHHHHHHHHHTTSSTTCEEEEETCTTCHHH-HHHHH--TTCSEEEEEESCHHHHHHH
T ss_pred             CCCCCCCCcccccCCC---CHHHHHHHHHHHHhcCCCCCCEEEECcCcchHHH-HHHHH--cCCCEEEEEcCcHHHHHHH
Confidence            4445777666666531   1223322222233445567899999999987664 55555  2335899999999999999


Q ss_pred             HHHHHhcCCCCCCeEEEEccccchhhcCCCcceeehhh
Q 042119          173 RSIVASDAEFEGRMKFLTRDIMEVKEQLGEYDCIFLAA  210 (286)
Q Consensus       173 r~~~~~~g~l~~~i~f~~~D~~~~~~~l~~fD~V~~aa  210 (286)
                      +++++..+   .+.++.++|+.++   .+.||+|+..-
T Consensus        86 ~~N~~~~~---~~~~~~~~d~~~~---~~~fD~Vi~nP  117 (201)
T d1wy7a1          86 IENLGEFK---GKFKVFIGDVSEF---NSRVDIVIMNP  117 (201)
T ss_dssp             HHHTGGGT---TSEEEEESCGGGC---CCCCSEEEECC
T ss_pred             HHHHHHcC---CCceEEECchhhh---CCcCcEEEEcC
Confidence            99988877   4789999998664   25799998653

>d2o07a1 c.66.1.17 (A:16-300) Spermidine synthase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Spermidine synthase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.99  E-value=5.9e-10  Score=99.99  Aligned_cols=112  Identities=20%  Similarity=0.264  Sum_probs=84.5

Q ss_pred             CCCCCEEEEeccCCChhhHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhc--CCCCCCeEEEEccccchhhcC-CCcc
Q 042119          128 VVQPKKVAFVGSGPMPLTSIIMAKHHLTSTHFDNFDIDEAANDVARSIVASD--AEFEGRMKFLTRDIMEVKEQL-GEYD  204 (286)
Q Consensus       128 ~~~~~~VL~IG~G~lp~tai~lA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~--g~l~~~i~f~~~D~~~~~~~l-~~fD  204 (286)
                      ...|++||.||.|. |.++-.+.+ +.+..+|+.+||||+.++.|++.+...  ..-..|++++.+|+.+..... +.||
T Consensus        76 ~~~pk~vLiiGgG~-G~~~~~~l~-~~~~~~v~~vEiD~~Vv~~a~~~~~~~~~~~~d~rv~i~~~Da~~~l~~~~~~yD  153 (285)
T d2o07a1          76 HPNPRKVLIIGGGD-GGVLREVVK-HPSVESVVQCEIDEDVIQVSKKFLPGMAIGYSSSKLTLHVGDGFEFMKQNQDAFD  153 (285)
T ss_dssp             SSSCCEEEEEECTT-SHHHHHHTT-CTTCCEEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEESCHHHHHHTCSSCEE
T ss_pred             CcCcCeEEEeCCCc-hHHHHHHHH-cCCcceeeeccCCHHHHHHHHhhchhhccccCCCCceEEEccHHHHHhcCCCCCC
Confidence            46789999999995 666677766 456789999999999999999986431  112479999999998877644 4699


Q ss_pred             eeehhhhccCChhH---HHHHHHHHHhhccCCcEEEEeec
Q 042119          205 CIFLAALVGMSKEE---KLTILGHIRKYMKDGGILLVRSA  241 (286)
Q Consensus       205 ~V~~aalvg~~~~~---k~~vl~~l~~~l~pgg~lv~r~~  241 (286)
                      +|+.+..-+.....   -.++++.+.++|+|||++++...
T Consensus       154 vIi~D~~~p~~~~~~L~t~eF~~~~~~~L~~~Gi~v~q~~  193 (285)
T d2o07a1         154 VIITDSSDPMGPAESLFKESYYQLMKTALKEDGVLCCQGE  193 (285)
T ss_dssp             EEEEECC-----------CHHHHHHHHHEEEEEEEEEEEE
T ss_pred             EEEEcCCCCCCcccccccHHHHHHHHHhcCCCCeEEEecc
Confidence            99988642111111   23689999999999999999864

>d1iy9a_ c.66.1.17 (A:) Spermidine synthase {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Spermidine synthase
species: Bacillus subtilis [TaxId: 1423]

Probab=98.94  E-value=9.7e-10  Score=98.01  Aligned_cols=111  Identities=20%  Similarity=0.244  Sum_probs=84.8

Q ss_pred             CCCCEEEEeccCCChhhHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhc-CC-CCCCeEEEEccccchhhcC-CCcce
Q 042119          129 VQPKKVAFVGSGPMPLTSIIMAKHHLTSTHFDNFDIDEAANDVARSIVASD-AE-FEGRMKFLTRDIMEVKEQL-GEYDC  205 (286)
Q Consensus       129 ~~~~~VL~IG~G~lp~tai~lA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~-g~-l~~~i~f~~~D~~~~~~~l-~~fD~  205 (286)
                      ..+++||.||.|. |.++-.+.+ +.+..+|+.+||||+.++.|++.+... +. -..|++++.+|+.+..... +.||+
T Consensus        74 ~~p~~vLiiGgG~-G~~~~~~l~-~~~~~~i~~VEID~~Vi~~a~~~~~~~~~~~~d~r~~i~~~D~~~~l~~~~~~yDv  151 (274)
T d1iy9a_          74 PNPEHVLVVGGGD-GGVIREILK-HPSVKKATLVDIDGKVIEYSKKFLPSIAGKLDDPRVDVQVDDGFMHIAKSENQYDV  151 (274)
T ss_dssp             SSCCEEEEESCTT-CHHHHHHTT-CTTCSEEEEEESCHHHHHHHHHHCHHHHTTTTSTTEEEEESCSHHHHHTCCSCEEE
T ss_pred             CCcceEEecCCCC-cHHHHHHHh-cCCcceEEEecCCHHHHHHHHHhChhhcccccCCCeEEEechHHHHHhhcCCCCCE
Confidence            6789999999995 666666666 356689999999999999999987431 21 1469999999998866644 46999


Q ss_pred             eehhhhc--cCChh-HHHHHHHHHHhhccCCcEEEEeec
Q 042119          206 IFLAALV--GMSKE-EKLTILGHIRKYMKDGGILLVRSA  241 (286)
Q Consensus       206 V~~aalv--g~~~~-~k~~vl~~l~~~l~pgg~lv~r~~  241 (286)
                      |+++..-  +.+.. --.++++.+.++|+|||+++...+
T Consensus       152 Ii~D~~~p~~~~~~L~t~eFy~~~~~~L~~~Gv~v~q~~  190 (274)
T d1iy9a_         152 IMVDSTEPVGPAVNLFTKGFYAGIAKALKEDGIFVAQTD  190 (274)
T ss_dssp             EEESCSSCCSCCCCCSTTHHHHHHHHHEEEEEEEEEECC
T ss_pred             EEEcCCCCCCcchhhccHHHHHHHHhhcCCCceEEEecC
Confidence            9988642  11110 034799999999999999999764

>d1xj5a_ c.66.1.17 (A:) Spermidine synthase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Spermidine synthase
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=98.93  E-value=1.6e-09  Score=97.33  Aligned_cols=112  Identities=18%  Similarity=0.338  Sum_probs=85.9

Q ss_pred             CCCCCEEEEeccCCChhhHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhc--CCCCCCeEEEEccccchhhcC--CCc
Q 042119          128 VVQPKKVAFVGSGPMPLTSIIMAKHHLTSTHFDNFDIDEAANDVARSIVASD--AEFEGRMKFLTRDIMEVKEQL--GEY  203 (286)
Q Consensus       128 ~~~~~~VL~IG~G~lp~tai~lA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~--g~l~~~i~f~~~D~~~~~~~l--~~f  203 (286)
                      ...|++||.||.|. |.++..+.+ +.+..+|+.+||||+.++.|++.+...  +.-.+|++++.+|+.+.....  +.|
T Consensus        78 ~~~pk~VLiiGgG~-G~~~r~~l~-~~~~~~i~~VEiD~~Vi~~~~~~f~~~~~~~~~~r~~i~~~Da~~~l~~~~~~~y  155 (290)
T d1xj5a_          78 IPNPKKVLVIGGGD-GGVLREVAR-HASIEQIDMCEIDKMVVDVSKQFFPDVAIGYEDPRVNLVIGDGVAFLKNAAEGSY  155 (290)
T ss_dssp             SSCCCEEEEETCSS-SHHHHHHTT-CTTCCEEEEEESCHHHHHHHHHHCHHHHGGGGSTTEEEEESCHHHHHHTSCTTCE
T ss_pred             CCCCcceEEecCCc-hHHHHHHHh-cccceeeEEecCCHHHHHHHHHhchhhhccccCCCcEEEEccHHHHHhhccccCc
Confidence            36789999999995 667777776 456679999999999999999986421  112479999999998877543  369


Q ss_pred             ceeehhhhccCChhH---HHHHHHHHHhhccCCcEEEEeec
Q 042119          204 DCIFLAALVGMSKEE---KLTILGHIRKYMKDGGILLVRSA  241 (286)
Q Consensus       204 D~V~~aalvg~~~~~---k~~vl~~l~~~l~pgg~lv~r~~  241 (286)
                      |+|++++.-+.....   -.++++.+.+.|+|||++++...
T Consensus       156 DvIi~D~~dp~~~~~~L~t~eF~~~~~~~L~~~Gi~v~q~~  196 (290)
T d1xj5a_         156 DAVIVDSSDPIGPAKELFEKPFFQSVARALRPGGVVCTQAE  196 (290)
T ss_dssp             EEEEECCCCTTSGGGGGGSHHHHHHHHHHEEEEEEEEEECC
T ss_pred             cEEEEcCCCCCCcchhhCCHHHHHHHHHhcCCCcEEEEecC
Confidence            999988653211111   25799999999999999999763

>d2fhpa1 c.66.1.46 (A:1-182) Putative methylase EF2452 {Enterococcus faecalis [TaxId: 1351]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: YhhF-like
domain: Putative methylase EF2452
species: Enterococcus faecalis [TaxId: 1351]

Probab=98.92  E-value=1.5e-09  Score=90.91  Aligned_cols=107  Identities=14%  Similarity=0.115  Sum_probs=82.5

Q ss_pred             CCCCEEEEeccCCChhhHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEccccchhhc----CCCcc
Q 042119          129 VQPKKVAFVGSGPMPLTSIIMAKHHLTSTHFDNFDIDEAANDVARSIVASDAEFEGRMKFLTRDIMEVKEQ----LGEYD  204 (286)
Q Consensus       129 ~~~~~VL~IG~G~lp~tai~lA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~g~l~~~i~f~~~D~~~~~~~----l~~fD  204 (286)
                      ..+++|||++||++.++...+.+   ...+|+.||.|+++++.++++++..+ ..++++++++|+.+....    -..||
T Consensus        40 ~~~~~vLDlfaGsG~~g~ea~sr---Ga~~v~~ve~~~~a~~~~~~N~~~~~-~~~~~~i~~~D~~~~l~~~~~~~~~fD  115 (182)
T d2fhpa1          40 FDGGMALDLYSGSGGLAIEAVSR---GMDKSICIEKNFAALKVIKENIAITK-EPEKFEVRKMDANRALEQFYEEKLQFD  115 (182)
T ss_dssp             CSSCEEEETTCTTCHHHHHHHHT---TCSEEEEEESCHHHHHHHHHHHHHHT-CGGGEEEEESCHHHHHHHHHHTTCCEE
T ss_pred             cCCCEEEEcccccccccceeeec---chhHHHHHHHHHHHHHHHHHHhhhhh-cccccccccccchhhhhhhcccCCCcc
Confidence            47899999999987666544443   23479999999999999999999999 688999999999875432    23699


Q ss_pred             eeehhhhccCChhHHHHHHHHHHh--hccCCcEEEEeec
Q 042119          205 CIFLAALVGMSKEEKLTILGHIRK--YMKDGGILLVRSA  241 (286)
Q Consensus       205 ~V~~aalvg~~~~~k~~vl~~l~~--~l~pgg~lv~r~~  241 (286)
                      +||++---  ......++++.+.+  .++|||++++...
T Consensus       116 lIflDPPY--~~~~~~~~l~~i~~~~~L~~~giIi~E~~  152 (182)
T d2fhpa1         116 LVLLDPPY--AKQEIVSQLEKMLERQLLTNEAVIVCETD  152 (182)
T ss_dssp             EEEECCCG--GGCCHHHHHHHHHHTTCEEEEEEEEEEEE
T ss_pred             eEEechhh--hhhHHHHHHHHHHHCCCCCCCEEEEEEcC
Confidence            99987421  12344567888865  5999999998643

>d2b2ca1 c.66.1.17 (A:3-314) Spermidine synthase {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Spermidine synthase
species: Caenorhabditis elegans [TaxId: 6239]

Probab=98.90  E-value=1.3e-09  Score=98.80  Aligned_cols=111  Identities=21%  Similarity=0.260  Sum_probs=82.3

Q ss_pred             CCCCEEEEeccCCChhhHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcC--CCCCCeEEEEccccchhhcC-CCcce
Q 042119          129 VQPKKVAFVGSGPMPLTSIIMAKHHLTSTHFDNFDIDEAANDVARSIVASDA--EFEGRMKFLTRDIMEVKEQL-GEYDC  205 (286)
Q Consensus       129 ~~~~~VL~IG~G~lp~tai~lA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~g--~l~~~i~f~~~D~~~~~~~l-~~fD~  205 (286)
                      ..|++||.||.|. |.++..+.+ +.+..+|+.+|||++.++.|++.+....  .-..|++++.+|+.+..... ..||+
T Consensus       105 ~~pk~VLIiGgG~-G~~~rellk-~~~v~~v~~VEID~~Vv~~a~~~~~~~~~~~~dprv~i~i~Da~~~l~~~~~~yDv  182 (312)
T d2b2ca1         105 PDPKRVLIIGGGD-GGILREVLK-HESVEKVTMCEIDEMVIDVAKKFLPGMSCGFSHPKLDLFCGDGFEFLKNHKNEFDV  182 (312)
T ss_dssp             SSCCEEEEESCTT-SHHHHHHTT-CTTCCEEEEECSCHHHHHHHHHHCTTTSGGGGCTTEEEECSCHHHHHHHCTTCEEE
T ss_pred             CCCCeEEEeCCCc-hHHHHHHHH-cCCcceEEEEcccHHHHHHHHhhchhhccccCCCCeEEEEchHHHHHHhCCCCCCE
Confidence            6789999999995 666667776 3556799999999999999999864321  01379999999998876644 36999


Q ss_pred             eehhhhccCChh---HHHHHHHHHHhhccCCcEEEEeec
Q 042119          206 IFLAALVGMSKE---EKLTILGHIRKYMKDGGILLVRSA  241 (286)
Q Consensus       206 V~~aalvg~~~~---~k~~vl~~l~~~l~pgg~lv~r~~  241 (286)
                      |+++..-+....   --.++++.+.+.|+|||+++....
T Consensus       183 II~D~~dp~~~~~~L~t~eFy~~~~~~L~~~Gi~v~q~~  221 (312)
T d2b2ca1         183 IITDSSDPVGPAESLFGQSYYELLRDALKEDGILSSQGE  221 (312)
T ss_dssp             EEECCC-------------HHHHHHHHEEEEEEEEEECC
T ss_pred             EEEcCCCCCCcchhhhhHHHHHHHHhhcCCCcEEEEecC
Confidence            998864211111   135789999999999999999864

>d2fpoa1 c.66.1.46 (A:10-192) Methylase YhhF {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: YhhF-like
domain: Methylase YhhF
species: Escherichia coli [TaxId: 562]

Probab=98.84  E-value=7.6e-09  Score=86.43  Aligned_cols=104  Identities=12%  Similarity=0.131  Sum_probs=79.8

Q ss_pred             CCCEEEEeccCCChhhHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEccccchhhcC-CCcceeeh
Q 042119          130 QPKKVAFVGSGPMPLTSIIMAKHHLTSTHFDNFDIDEAANDVARSIVASDAEFEGRMKFLTRDIMEVKEQL-GEYDCIFL  208 (286)
Q Consensus       130 ~~~~VL~IG~G~lp~tai~lA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~g~l~~~i~f~~~D~~~~~~~l-~~fD~V~~  208 (286)
                      .+.+|||++||++.++--.+.+   ...+|+.||+|+++++.++++++..+ . .+++++.+|+.+..... ..||+||+
T Consensus        43 ~~~~vLDlfaGsG~~giealsr---Ga~~v~~VE~~~~a~~~~k~N~~~~~-~-~~~~ii~~d~~~~l~~~~~~fDlIf~  117 (183)
T d2fpoa1          43 VDAQCLDCFAGSGALGLEALSR---YAAGATLIEMDRAVSQQLIKNLATLK-A-GNARVVNSNAMSFLAQKGTPHNIVFV  117 (183)
T ss_dssp             TTCEEEETTCTTCHHHHHHHHT---TCSEEEEECSCHHHHHHHHHHHHHTT-C-CSEEEECSCHHHHHSSCCCCEEEEEE
T ss_pred             chhhhhhhhccccceeeeEEec---CcceeEEEEEeechhhHHHHHHhhcc-c-cceeeeeecccccccccccccCEEEE
Confidence            5789999999986665444443   33489999999999999999999988 3 67899999998776543 36999998


Q ss_pred             hhhccCChhHHHHHHHHHHh--hccCCcEEEEee
Q 042119          209 AALVGMSKEEKLTILGHIRK--YMKDGGILLVRS  240 (286)
Q Consensus       209 aalvg~~~~~k~~vl~~l~~--~l~pgg~lv~r~  240 (286)
                      +---  ......++++.+.+  .++|+|++++..
T Consensus       118 DPPY--~~~~~~~~l~~l~~~~~L~~~~iIiiE~  149 (183)
T d2fpoa1         118 DPPF--RRGLLEETINLLEDNGWLADEALIYVES  149 (183)
T ss_dssp             CCSS--STTTHHHHHHHHHHTTCEEEEEEEEEEE
T ss_pred             cCcc--ccchHHHHHHHHHHCCCCCCCeEEEEEe
Confidence            8422  12345567777765  599999999864

>d1ne2a_ c.66.1.32 (A:) Hypothetical protein Ta1320 {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Ta1320-like
domain: Hypothetical protein Ta1320
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=98.83  E-value=8.5e-09  Score=87.58  Aligned_cols=108  Identities=23%  Similarity=0.317  Sum_probs=66.3

Q ss_pred             hhHHHHHHhcCCCCcccccccCcCccchhhhhHHHHHHHHhcCCCCCCEEEEeccCCChhhHHHHHhhcCCCcEEEEEeC
Q 042119           85 LELEFATFLTKIPQPLNNLSLFPYYGNYVKLSKLEYTILSENGVVQPKKVAFVGSGPMPLTSIIMAKHHLTSTHFDNFDI  164 (286)
Q Consensus        85 lE~~~A~~l~~~~~p~~~L~~fpy~~ny~~l~~~E~~~l~~~~~~~~~~VL~IG~G~lp~tai~lA~~~~~g~~V~~iDi  164 (286)
                      ||...+ ++...++|-..|+.|+=-   -+++..=...+...+.-.|++|||+|||++.+ ++.+++  ....+|+++|+
T Consensus         7 l~~~l~-~~~~~~~~~~~leQy~T~---~~~a~~~~~~~~~~~dl~Gk~VLDlGcGtG~l-~i~a~~--~ga~~V~~vDi   79 (197)
T d1ne2a_           7 LEIRLQ-KLQQQGNFKNYLEQYPTD---ASTAAYFLIEIYNDGNIGGRSVIDAGTGNGIL-ACGSYL--LGAESVTAFDI   79 (197)
T ss_dssp             HHHHHH-TSCCCC--------CCCC---HHHHHHHHHHHHHHTSSBTSEEEEETCTTCHH-HHHHHH--TTBSEEEEEES
T ss_pred             HHHHHh-cCCCCCCCCcccccCCCC---HHHHHHHHHHHHHcCCCCCCEEEEeCCCCcHH-HHHHHH--cCCCccccccc
Confidence            444332 344457776666666422   23332222222233445789999999998544 566666  23457999999


Q ss_pred             ChHHHHHHHHHHHhcCCCCCCeEEEEccccchhhcCCCcceeehh
Q 042119          165 DEAANDVARSIVASDAEFEGRMKFLTRDIMEVKEQLGEYDCIFLA  209 (286)
Q Consensus       165 d~~ai~~Ar~~~~~~g~l~~~i~f~~~D~~~~~~~l~~fD~V~~a  209 (286)
                      |+++++.|++++       .+++|+++|+.+++   +.||+|+..
T Consensus        80 d~~a~~~ar~N~-------~~~~~~~~D~~~l~---~~fD~Vi~N  114 (197)
T d1ne2a_          80 DPDAIETAKRNC-------GGVNFMVADVSEIS---GKYDTWIMN  114 (197)
T ss_dssp             CHHHHHHHHHHC-------TTSEEEECCGGGCC---CCEEEEEEC
T ss_pred             CHHHHHHHHHcc-------ccccEEEEehhhcC---CcceEEEeC
Confidence            999999999972       36899999997643   579999854

>d1nv8a_ c.66.1.30 (A:) N5-glutamine methyltransferase, HemK {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: N5-glutamine methyltransferase, HemK
domain: N5-glutamine methyltransferase, HemK
species: Thermotoga maritima [TaxId: 2336]

Probab=98.81  E-value=1.9e-08  Score=89.30  Aligned_cols=106  Identities=20%  Similarity=0.251  Sum_probs=77.5

Q ss_pred             CCCCEEEEeccCCChhhHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEccccchhhc-CCCcceee
Q 042119          129 VQPKKVAFVGSGPMPLTSIIMAKHHLTSTHFDNFDIDEAANDVARSIVASDAEFEGRMKFLTRDIMEVKEQ-LGEYDCIF  207 (286)
Q Consensus       129 ~~~~~VL~IG~G~lp~tai~lA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~g~l~~~i~f~~~D~~~~~~~-l~~fD~V~  207 (286)
                      .+..+|+++|||.+ .-++.+|+  .++++|+++|+|++|++.|++++++.| +.+++.++.+|..+.... .+.||+|+
T Consensus       109 ~~~~~vld~g~GsG-~i~~~la~--~~~~~v~a~Dis~~Al~~A~~Na~~~~-~~~~~~i~~~~~~~~~~~~~~~fDlIV  184 (271)
T d1nv8a_         109 YGIKTVADIGTGSG-AIGVSVAK--FSDAIVFATDVSSKAVEIARKNAERHG-VSDRFFVRKGEFLEPFKEKFASIEMIL  184 (271)
T ss_dssp             HTCCEEEEESCTTS-HHHHHHHH--HSSCEEEEEESCHHHHHHHHHHHHHTT-CTTSEEEEESSTTGGGGGGTTTCCEEE
T ss_pred             ccccEEEEeeeeee-hhhhhhhh--cccceeeechhhhhHHHHHHHHHHHcC-CCceeEEeecccccccccccCcccEEE
Confidence            34579999999964 44555676  489999999999999999999999999 788999999998775433 35799986


Q ss_pred             hh--------------------hhccCC--hhHHHHHHHHHHhhccCCcEEEEeec
Q 042119          208 LA--------------------ALVGMS--KEEKLTILGHIRKYMKDGGILLVRSA  241 (286)
Q Consensus       208 ~a--------------------alvg~~--~~~k~~vl~~l~~~l~pgg~lv~r~~  241 (286)
                      ..                    |+.|..  ..-..++   +.+.|+|||.+++--+
T Consensus       185 sNPPYI~~~~~l~~~~~~EP~~AL~gg~dGl~~~r~i---~~~~L~~~G~l~~Eig  237 (271)
T d1nv8a_         185 SNPPYVKSSAHLPKDVLFEPPEALFGGEDGLDFYREF---FGRYDTSGKIVLMEIG  237 (271)
T ss_dssp             ECCCCBCGGGSCTTSCCCSCHHHHBCTTTSCHHHHHH---HHHCCCTTCEEEEECC
T ss_pred             EcccccCcccccceeeeeccccccccccchHHHHHHH---HHHhcCCCCEEEEEEC
Confidence            32                    111110  0112233   4568999999988643

>d1jsxa_ c.66.1.20 (A:) Glucose-inhibited division protein B (GidB) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Glucose-inhibited division protein B (GidB)
domain: Glucose-inhibited division protein B (GidB)
species: Escherichia coli [TaxId: 562]

Probab=98.79  E-value=1.1e-08  Score=87.52  Aligned_cols=137  Identities=15%  Similarity=0.131  Sum_probs=100.9

Q ss_pred             CCCEEEEeccCCChhhHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEccccchhhcCCCcceeehh
Q 042119          130 QPKKVAFVGSGPMPLTSIIMAKHHLTSTHFDNFDIDEAANDVARSIVASDAEFEGRMKFLTRDIMEVKEQLGEYDCIFLA  209 (286)
Q Consensus       130 ~~~~VL~IG~G~lp~tai~lA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~g~l~~~i~f~~~D~~~~~~~l~~fD~V~~a  209 (286)
                      ++.+|+||||| .|+..+.+|- ..|+.+|+.+|.+...++.-++.++.+|+  ++++++++.+.+... ...||+|..-
T Consensus        65 ~~~~ilDiGsG-aG~PGi~laI-~~p~~~~~Lves~~KK~~FL~~~~~~L~L--~nv~v~~~R~E~~~~-~~~fD~V~sR  139 (207)
T d1jsxa_          65 QGERFIDVGTG-PGLPGIPLSI-VRPEAHFTLLDSLGKRVRFLRQVQHELKL--ENIEPVQSRVEEFPS-EPPFDGVISR  139 (207)
T ss_dssp             CSSEEEEETCT-TTTTHHHHHH-HCTTSEEEEEESCHHHHHHHHHHHHHTTC--SSEEEEECCTTTSCC-CSCEEEEECS
T ss_pred             cCCceeeeecc-CCceeeehhh-hcccceEEEEecchHHHHHHHHHHHHcCC--cceeeeccchhhhcc-ccccceehhh
Confidence            35799999999 5999999997 68999999999999999999999999994  689999999987543 2479998866


Q ss_pred             hhccCChhHHHHHHHHHHhhccCCcEEEEeecCcceeeecccCCcccc-cCcEEEEE---ecCcccceeeeEEEeec
Q 042119          210 ALVGMSKEEKLTILGHIRKYMKDGGILLVRSAKGARAFLYPVVVEHDL-LDFEVLSA---VHPNDDVINSVVLVRNS  282 (286)
Q Consensus       210 alvg~~~~~k~~vl~~l~~~l~pgg~lv~r~~~g~r~~lyp~v~~~~l-~gf~~~~~---~~P~~~vinsvi~~r~~  282 (286)
                      |+.     +-..+++-..+.+++||.+++--+.....      +...+ .+|+...+   .-|..+---++|+.||.
T Consensus       140 A~~-----~~~~ll~~~~~~l~~~g~~~~~KG~~~~e------El~~~~~~~~~~~~~~~~~p~~~~~R~iv~ikk~  205 (207)
T d1jsxa_         140 AFA-----SLNDMVSWCHHLPGEQGRFYALKGQMPED------EIALLPEEYQVESVVKLQVPALDGERHLVVIKAN  205 (207)
T ss_dssp             CSS-----SHHHHHHHHTTSEEEEEEEEEEESSCCHH------HHHTSCTTEEEEEEEEEECC--CCEEEEEEEEEC
T ss_pred             hhc-----CHHHHHHHHHHhcCCCcEEEEECCCCHHH------HHHhhhcCCEEEEEEEecCCCCCCcEEEEEEEec
Confidence            653     55579999999999999988875432111      11122 46765322   23554444456777764

>d1fp1d2 c.66.1.12 (D:129-372) Chalcone O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Plant O-methyltransferase, C-terminal domain
domain: Chalcone O-methyltransferase
species: Alfalfa (Medicago sativa) [TaxId: 3879]

Probab=98.78  E-value=2.5e-08  Score=87.04  Aligned_cols=98  Identities=15%  Similarity=0.218  Sum_probs=77.9

Q ss_pred             CCCCEEEEeccCCChhhHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEccccchhhcCCCcceeeh
Q 042119          129 VQPKKVAFVGSGPMPLTSIIMAKHHLTSTHFDNFDIDEAANDVARSIVASDAEFEGRMKFLTRDIMEVKEQLGEYDCIFL  208 (286)
Q Consensus       129 ~~~~~VL~IG~G~lp~tai~lA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~g~l~~~i~f~~~D~~~~~~~l~~fD~V~~  208 (286)
                      ....+|+|||||+ |.-++.+++ .+|+.+++.+|+. +.       ++..+ ..+|++++.+|..+   +....|++++
T Consensus        80 ~~~~~vlDiGGG~-G~~~~~l~~-~~P~l~~~v~Dlp-~v-------i~~~~-~~~ri~~~~gd~~~---~~p~~D~~~l  145 (244)
T d1fp1d2          80 EGISTLVDVGGGS-GRNLELIIS-KYPLIKGINFDLP-QV-------IENAP-PLSGIEHVGGDMFA---SVPQGDAMIL  145 (244)
T ss_dssp             TTCSEEEEETCTT-SHHHHHHHH-HCTTCEEEEEECH-HH-------HTTCC-CCTTEEEEECCTTT---CCCCEEEEEE
T ss_pred             cCCcEEEEecCCC-cHHHHHHHH-HCCCCeEEEecch-hh-------hhccC-CCCCeEEecCCccc---ccccceEEEE
Confidence            5568999999997 555566666 4899999999984 33       34555 56899999999854   3446799887


Q ss_pred             hhhc-cCChhHHHHHHHHHHhhccCCcEEEEee
Q 042119          209 AALV-GMSKEEKLTILGHIRKYMKDGGILLVRS  240 (286)
Q Consensus       209 aalv-g~~~~~k~~vl~~l~~~l~pgg~lv~r~  240 (286)
                      .... .++.++..++|+++++.|+|||+|++.+
T Consensus       146 ~~vLh~~~de~~~~iL~~~~~aL~pgg~llI~e  178 (244)
T d1fp1d2         146 KAVCHNWSDEKCIEFLSNCHKALSPNGKVIIVE  178 (244)
T ss_dssp             ESSGGGSCHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred             ehhhhhCCHHHHHHHHHHHHHHcCCCcEEEEEE
Confidence            6543 7788899999999999999999998865

>d2h00a1 c.66.1.54 (A:5-254) Methyltransferase 10 domain containing protein METT10D {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Methyltransferase 10 domain
domain: Methyltransferase 10 domain containing protein METT10D
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.72  E-value=1.8e-08  Score=88.26  Aligned_cols=77  Identities=13%  Similarity=0.131  Sum_probs=60.5

Q ss_pred             CCCCEEEEeccCCChhhHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEccccchhh------cCCC
Q 042119          129 VQPKKVAFVGSGPMPLTSIIMAKHHLTSTHFDNFDIDEAANDVARSIVASDAEFEGRMKFLTRDIMEVKE------QLGE  202 (286)
Q Consensus       129 ~~~~~VL~IG~G~lp~tai~lA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~g~l~~~i~f~~~D~~~~~~------~l~~  202 (286)
                      .+..+|||||||++..+ +.+|+ ..++++|+|+|+|++|++.|+++++..+ +++++.+..++..+...      ..+.
T Consensus        60 ~~~~~~LDiGtGsg~I~-~~l~~-~~~~~~~~~~Di~~~al~~A~~N~~~n~-l~~~~~~~~~~~~~~~~~~~~~~~~~~  136 (250)
T d2h00a1          60 STLRRGIDIGTGASCIY-PLLGA-TLNGWYFLATEVDDMCFNYAKKNVEQNN-LSDLIKVVKVPQKTLLMDALKEESEII  136 (250)
T ss_dssp             CCCCEEEEESCTTTTHH-HHHHH-HHHCCEEEEEESCHHHHHHHHHHHHHTT-CTTTEEEEECCTTCSSTTTSTTCCSCC
T ss_pred             cccceEEEeCCCchHHH-HHHHH-hCCCccccceecCHHHHHHHHHHHHHhC-CCcceeeeeeccHHhhhhhhhhcccCc
Confidence            45579999999985554 55665 3689999999999999999999999999 89999999877543221      1235


Q ss_pred             cceeeh
Q 042119          203 YDCIFL  208 (286)
Q Consensus       203 fD~V~~  208 (286)
                      ||+|+.
T Consensus       137 fD~ivs  142 (250)
T d2h00a1         137 YDFCMC  142 (250)
T ss_dssp             BSEEEE
T ss_pred             eeEEEe
Confidence            999853

>d1fp2a2 c.66.1.12 (A:109-352) Isoflavone O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Plant O-methyltransferase, C-terminal domain
domain: Isoflavone O-methyltransferase
species: Alfalfa (Medicago sativa) [TaxId: 3879]

Probab=98.71  E-value=3.2e-08  Score=86.37  Aligned_cols=98  Identities=15%  Similarity=0.257  Sum_probs=77.6

Q ss_pred             CCCCEEEEeccCCChhhHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEccccchhhcCCCcceeeh
Q 042119          129 VQPKKVAFVGSGPMPLTSIIMAKHHLTSTHFDNFDIDEAANDVARSIVASDAEFEGRMKFLTRDIMEVKEQLGEYDCIFL  208 (286)
Q Consensus       129 ~~~~~VL~IG~G~lp~tai~lA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~g~l~~~i~f~~~D~~~~~~~l~~fD~V~~  208 (286)
                      ..-.+|+|||||. |..++.+++ .+|+.+++.+|.. +.       ++..+ ..+|++|+.+|..+   +..++|++++
T Consensus        79 ~~~~~vvDvGGG~-G~~~~~l~~-~~P~l~~~v~Dlp-~v-------i~~~~-~~~rv~~~~gD~f~---~~p~aD~~~l  144 (244)
T d1fp2a2          79 DGLESIVDVGGGT-GTTAKIICE-TFPKLKCIVFDRP-QV-------VENLS-GSNNLTYVGGDMFT---SIPNADAVLL  144 (244)
T ss_dssp             TTCSEEEEETCTT-SHHHHHHHH-HCTTCEEEEEECH-HH-------HTTCC-CBTTEEEEECCTTT---CCCCCSEEEE
T ss_pred             cCceEEEEecCCc-cHHHHHHHH-hCCCCeEEEecCH-HH-------HHhCc-ccCceEEEecCccc---CCCCCcEEEE
Confidence            3457899999996 666777777 5899999999994 33       45567 67999999999854   3457899987


Q ss_pred             hhhc-cCChhHHHHHHHHHHhhccCC---cEEEEee
Q 042119          209 AALV-GMSKEEKLTILGHIRKYMKDG---GILLVRS  240 (286)
Q Consensus       209 aalv-g~~~~~k~~vl~~l~~~l~pg---g~lv~r~  240 (286)
                      .... .++.++..++|+++++.|+||   |++++-+
T Consensus       145 ~~vLHdw~d~~~~~iL~~~~~al~pgg~~~~lli~e  180 (244)
T d1fp2a2         145 KYILHNWTDKDCLRILKKCKEAVTNDGKRGKVTIID  180 (244)
T ss_dssp             ESCGGGSCHHHHHHHHHHHHHHHSGGGCCCEEEEEE
T ss_pred             EeecccCChHHHHHHHHHHHHHcCcccCCcEEEEEE
Confidence            6544 778888899999999999998   6676654

>d1e3ja2 c.2.1.1 (A:143-312) Ketose reductase (sorbitol dehydrogenase) {Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Ketose reductase (sorbitol dehydrogenase)
species: Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]

Probab=98.65  E-value=7.3e-08  Score=78.37  Aligned_cols=106  Identities=15%  Similarity=0.185  Sum_probs=77.3

Q ss_pred             HHHHHhcCCCCCCEEEEeccCCChhhHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEcccc----c
Q 042119          120 YTILSENGVVQPKKVAFVGSGPMPLTSIIMAKHHLTSTHFDNFDIDEAANDVARSIVASDAEFEGRMKFLTRDIM----E  195 (286)
Q Consensus       120 ~~~l~~~~~~~~~~VL~IG~G~lp~tai~lA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~g~l~~~i~f~~~D~~----~  195 (286)
                      +.++.+.+++++++|+.+|+|++|+.++.+|+.  .|++|+++|.+++..+.|+++    |   ....+..-+..    +
T Consensus        16 ~~a~~~~~~~~g~~vlV~G~G~vG~~~~~~ak~--~Ga~vi~v~~~~~r~~~a~~~----g---a~~~~~~~~~~~~~~~   86 (170)
T d1e3ja2          16 VHACRRAGVQLGTTVLVIGAGPIGLVSVLAAKA--YGAFVVCTARSPRRLEVAKNC----G---ADVTLVVDPAKEEESS   86 (170)
T ss_dssp             HHHHHHHTCCTTCEEEEECCSHHHHHHHHHHHH--TTCEEEEEESCHHHHHHHHHT----T---CSEEEECCTTTSCHHH
T ss_pred             HHHHHHhCCCCCCEEEEEcccccchhhHhhHhh--hcccccccchHHHHHHHHHHc----C---CcEEEeccccccccch
Confidence            334566788999999999999999999999994  789999999999999999884    4   22333222111    1


Q ss_pred             h----hhcC-CCcceeehhhhccCChhHHHHHHHHHHhhccCCcEEEEeec
Q 042119          196 V----KEQL-GEYDCIFLAALVGMSKEEKLTILGHIRKYMKDGGILLVRSA  241 (286)
Q Consensus       196 ~----~~~l-~~fD~V~~aalvg~~~~~k~~vl~~l~~~l~pgg~lv~r~~  241 (286)
                      .    .... ..+|+||.+.-.     +  ..++...+.++|||++++-..
T Consensus        87 ~~~~~~~~~g~g~D~vid~~g~-----~--~~~~~a~~~~~~~G~iv~~G~  130 (170)
T d1e3ja2          87 IIERIRSAIGDLPNVTIDCSGN-----E--KCITIGINITRTGGTLMLVGM  130 (170)
T ss_dssp             HHHHHHHHSSSCCSEEEECSCC-----H--HHHHHHHHHSCTTCEEEECSC
T ss_pred             hhhhhhcccccCCceeeecCCC-----h--HHHHHHHHHHhcCCceEEEec
Confidence            1    1111 369999976432     1  467788899999999998763

>d1pl8a2 c.2.1.1 (A:146-316) Ketose reductase (sorbitol dehydrogenase) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Ketose reductase (sorbitol dehydrogenase)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.59  E-value=5.3e-08  Score=79.58  Aligned_cols=107  Identities=17%  Similarity=0.211  Sum_probs=76.4

Q ss_pred             HHHHhcCCCCCCEEEEeccCCChhhHHHHHhhcCCCc-EEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEccccchhh-
Q 042119          121 TILSENGVVQPKKVAFVGSGPMPLTSIIMAKHHLTST-HFDNFDIDEAANDVARSIVASDAEFEGRMKFLTRDIMEVKE-  198 (286)
Q Consensus       121 ~~l~~~~~~~~~~VL~IG~G~lp~tai~lA~~~~~g~-~V~~iDid~~ai~~Ar~~~~~~g~l~~~i~f~~~D~~~~~~-  198 (286)
                      .++.+..++++++|+.+|+||+|+.++.+|+.  .|+ +|+++|.+++.+++|+++    |. ..-+.....|..+... 
T Consensus        17 ~a~~~~~~~~gd~VlI~G~G~iG~~~~~~a~~--~G~~~Vi~~d~~~~rl~~a~~~----Ga-~~~~~~~~~~~~~~~~~   89 (171)
T d1pl8a2          17 HACRRGGVTLGHKVLVCGAGPIGMVTLLVAKA--MGAAQVVVTDLSATRLSKAKEI----GA-DLVLQISKESPQEIARK   89 (171)
T ss_dssp             HHHHHHTCCTTCEEEEECCSHHHHHHHHHHHH--TTCSEEEEEESCHHHHHHHHHT----TC-SEEEECSSCCHHHHHHH
T ss_pred             HHHHHhCCCCCCEEEEECCCccHHHHHHHHHH--cCCceEEeccCCHHHHHHHHHh----CC-ccccccccccccccccc
Confidence            45566788999999999999999999999994  566 899999999999988874    62 1111111112111111 


Q ss_pred             ---cC-CCcceeehhhhccCChhHHHHHHHHHHhhccCCcEEEEeec
Q 042119          199 ---QL-GEYDCIFLAALVGMSKEEKLTILGHIRKYMKDGGILLVRSA  241 (286)
Q Consensus       199 ---~l-~~fD~V~~aalvg~~~~~k~~vl~~l~~~l~pgg~lv~r~~  241 (286)
                         .. .++|+||.+.-.       ...++...+.++|||++++-..
T Consensus        90 ~~~~~g~g~Dvvid~~G~-------~~~~~~a~~~~~~gG~iv~~G~  129 (171)
T d1pl8a2          90 VEGQLGCKPEVTIECTGA-------EASIQAGIYATRSGGTLVLVGL  129 (171)
T ss_dssp             HHHHHTSCCSEEEECSCC-------HHHHHHHHHHSCTTCEEEECSC
T ss_pred             ccccCCCCceEEEeccCC-------chhHHHHHHHhcCCCEEEEEec
Confidence               11 368999976532       2478889999999999999764

>d1kyza2 c.66.1.12 (A:120-362) Caffeic acid/5-hydroxyferulic acid 3/5-O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Plant O-methyltransferase, C-terminal domain
domain: Caffeic acid/5-hydroxyferulic acid 3/5-O-methyltransferase
species: Alfalfa (Medicago sativa) [TaxId: 3879]

Probab=98.57  E-value=1.3e-07  Score=81.96  Aligned_cols=98  Identities=17%  Similarity=0.228  Sum_probs=75.7

Q ss_pred             CCCCEEEEeccCCChhhHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEccccchhhcCCCcceeeh
Q 042119          129 VQPKKVAFVGSGPMPLTSIIMAKHHLTSTHFDNFDIDEAANDVARSIVASDAEFEGRMKFLTRDIMEVKEQLGEYDCIFL  208 (286)
Q Consensus       129 ~~~~~VL~IG~G~lp~tai~lA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~g~l~~~i~f~~~D~~~~~~~l~~fD~V~~  208 (286)
                      ...++|+|||||. |.-++.+++ .+|+.+++++|+.+.        ++... ..++++++.+|..+   ++...|++++
T Consensus        80 ~~~~~vvDvGGG~-G~~~~~l~~-~~P~l~~~v~Dlp~v--------i~~~~-~~~r~~~~~~d~~~---~~P~ad~~~l  145 (243)
T d1kyza2          80 EGLKSLVDVGGGT-GAVINTIVS-KYPTIKGINFDLPHV--------IEDAP-SYPGVEHVGGDMFV---SIPKADAVFM  145 (243)
T ss_dssp             SSCSEEEEETCTT-SHHHHHHHH-HCTTSEEEEEECTTT--------TTTCC-CCTTEEEEECCTTT---CCCCCSCEEC
T ss_pred             cCCcEEEEecCCC-cHHHHHHHH-HCCCCeEEEcccHHh--------hhhcc-cCCceEEecccccc---cCCCcceEEE
Confidence            4457999999996 666777777 589999999999753        23344 46899999999854   2334576666


Q ss_pred             hhh-ccCChhHHHHHHHHHHhhccCCcEEEEee
Q 042119          209 AAL-VGMSKEEKLTILGHIRKYMKDGGILLVRS  240 (286)
Q Consensus       209 aal-vg~~~~~k~~vl~~l~~~l~pgg~lv~r~  240 (286)
                      ... ..++.++..++|+++++.|+|||.+++-+
T Consensus       146 ~~vlh~~~d~~~~~iL~~~~~al~pgg~~li~d  178 (243)
T d1kyza2         146 KWICHDWSDEHCLKFLKNCYEALPDNGKVIVAE  178 (243)
T ss_dssp             SSSSTTSCHHHHHHHHHHHHHHCCSSSCEEEEE
T ss_pred             EEEeecCCHHHHHHHHHHHHHhcCCCceEEEEE
Confidence            543 36788889999999999999999888764

>d1pjca1 c.2.1.4 (A:136-303) L-alanine dehydrogenase {Phormidium lapideum [TaxId: 32060]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: L-alanine dehydrogenase
species: Phormidium lapideum [TaxId: 32060]

Probab=98.56  E-value=1.1e-08  Score=84.56  Aligned_cols=104  Identities=21%  Similarity=0.327  Sum_probs=86.0

Q ss_pred             CCCCEEEEeccCCChhhHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEccccchhhcCCCcceeeh
Q 042119          129 VQPKKVAFVGSGPMPLTSIIMAKHHLTSTHFDNFDIDEAANDVARSIVASDAEFEGRMKFLTRDIMEVKEQLGEYDCIFL  208 (286)
Q Consensus       129 ~~~~~VL~IG~G~lp~tai~lA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~g~l~~~i~f~~~D~~~~~~~l~~fD~V~~  208 (286)
                      .+|.+|+.||+|-.|+.|+..|++  .|++|+.+|.+++.++.-+...   +   .++++...+-..+...+.+.|+|+.
T Consensus        30 v~pa~V~ViGaGvaG~~A~~~A~~--lGA~V~~~D~~~~~l~~l~~~~---~---~~~~~~~~~~~~l~~~~~~aDivI~  101 (168)
T d1pjca1          30 VKPGKVVILGGGVVGTEAAKMAVG--LGAQVQIFDINVERLSYLETLF---G---SRVELLYSNSAEIETAVAEADLLIG  101 (168)
T ss_dssp             BCCCEEEEECCSHHHHHHHHHHHH--TTCEEEEEESCHHHHHHHHHHH---G---GGSEEEECCHHHHHHHHHTCSEEEE
T ss_pred             CCCcEEEEECCChHHHHHHHHHhh--CCCEEEEEeCcHHHHHHHHHhh---c---ccceeehhhhhhHHHhhccCcEEEE
Confidence            578999999999999999999995  8999999999999988766652   2   4677887776666666778999999


Q ss_pred             hhhccCChhHHHHHHHHHHhhccCCcEEEEeec
Q 042119          209 AALVGMSKEEKLTILGHIRKYMKDGGILLVRSA  241 (286)
Q Consensus       209 aalvg~~~~~k~~vl~~l~~~l~pgg~lv~r~~  241 (286)
                      ++++...+.+|. +-+++.+.||||.+++--..
T Consensus       102 aalipG~~aP~l-It~~mv~~Mk~GSVIVDvai  133 (168)
T d1pjca1         102 AVLVPGRRAPIL-VPASLVEQMRTGSVIVDVAV  133 (168)
T ss_dssp             CCCCTTSSCCCC-BCHHHHTTSCTTCEEEETTC
T ss_pred             eeecCCcccCee-ecHHHHhhcCCCcEEEEeec
Confidence            999844445553 77889999999999987664

>d1jqba2 c.2.1.1 (A:1140-1313) Bacterial secondary alcohol dehydrogenase {Clostridium beijerinckii [TaxId: 1520]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Bacterial secondary alcohol dehydrogenase
species: Clostridium beijerinckii [TaxId: 1520]

Probab=98.53  E-value=2.3e-08  Score=82.69  Aligned_cols=118  Identities=19%  Similarity=0.200  Sum_probs=79.8

Q ss_pred             HHHHHhcCCCCCCEEEEeccCCChhhHHHHHhhcCCCc-EEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEccccchhh
Q 042119          120 YTILSENGVVQPKKVAFVGSGPMPLTSIIMAKHHLTST-HFDNFDIDEAANDVARSIVASDAEFEGRMKFLTRDIMEVKE  198 (286)
Q Consensus       120 ~~~l~~~~~~~~~~VL~IG~G~lp~tai~lA~~~~~g~-~V~~iDid~~ai~~Ar~~~~~~g~l~~~i~f~~~D~~~~~~  198 (286)
                      +.++++..++++++||.+|||++|+.++.+|+  ..|+ +|+++|.+++..+.|++    +|. ..-+++...+..+...
T Consensus        17 ~~a~~~a~~~~g~~VlI~GaG~vGl~~~q~ak--~~Ga~~Vi~~d~~~~r~~~a~~----lGa-~~~i~~~~~~~~~~v~   89 (174)
T d1jqba2          17 FHGAELADIEMGSSVVVIGIGAVGLMGIAGAK--LRGAGRIIGVGSRPICVEAAKF----YGA-TDILNYKNGHIEDQVM   89 (174)
T ss_dssp             HHHHHHTTCCTTCCEEEECCSHHHHHHHHHHH--TTTCSCEEEECCCHHHHHHHHH----HTC-SEEECGGGSCHHHHHH
T ss_pred             HHHHHHhCCCCCCEEEEEcCCcchhhhhhhhh--cccccccccccchhhhHHHHHh----hCc-cccccccchhHHHHHH
Confidence            34455677899999999999999999999999  4676 79999999999999876    452 1112121112111111


Q ss_pred             cC---CCcceeehhhhccCChhHHHHHHHHHHhhccCCcEEEEeecC-cceeeeccc
Q 042119          199 QL---GEYDCIFLAALVGMSKEEKLTILGHIRKYMKDGGILLVRSAK-GARAFLYPV  251 (286)
Q Consensus       199 ~l---~~fD~V~~aalvg~~~~~k~~vl~~l~~~l~pgg~lv~r~~~-g~r~~lyp~  251 (286)
                      ++   .+||+||.+.-.     +  ..+++..+.++|||.+++-... +...+..|.
T Consensus        90 ~~t~g~G~D~vid~~g~-----~--~~~~~a~~~~~~~G~iv~~G~~~~~~~~~~~~  139 (174)
T d1jqba2          90 KLTNGKGVDRVIMAGGG-----S--ETLSQAVKMVKPGGIISNINYHGSGDALLIPR  139 (174)
T ss_dssp             HHTTTSCEEEEEECSSC-----T--THHHHHHHHEEEEEEEEECCCCCSSSEEEEET
T ss_pred             HHhhccCcceEEEccCC-----H--HHHHHHHHHHhcCCEEEEEeecCCCCcCcCcH
Confidence            11   359999976532     1  3667788999999999997632 223344444

>d1af7a2 c.66.1.8 (A:92-284) Chemotaxis receptor methyltransferase CheR, C-terminal domain {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Chemotaxis receptor methyltransferase CheR, C-terminal domain
domain: Chemotaxis receptor methyltransferase CheR, C-terminal domain
species: Salmonella typhimurium [TaxId: 90371]

Probab=98.53  E-value=1.7e-07  Score=78.61  Aligned_cols=114  Identities=18%  Similarity=0.202  Sum_probs=77.2

Q ss_pred             CCCCEEEEeccCCChhhHHHH----Hhh---cCCCcEEEEEeCChHHHHHHHHHH------------------HhcCC--
Q 042119          129 VQPKKVAFVGSGPMPLTSIIM----AKH---HLTSTHFDNFDIDEAANDVARSIV------------------ASDAE--  181 (286)
Q Consensus       129 ~~~~~VL~IG~G~lp~tai~l----A~~---~~~g~~V~~iDid~~ai~~Ar~~~------------------~~~g~--  181 (286)
                      .++-||+.+|||+ |-.+..|    ...   .....+|+|.|+|+.+++.|++-.                  .+.+.  
T Consensus        23 ~~~lrIwsaGCst-GeE~YSlA~~l~e~~~~~~~~~~I~atDi~~~~l~~A~~g~y~~~~~~~~~~~~~~~yf~~~~~~~  101 (193)
T d1af7a2          23 HGEYRVWSAAAST-GEEPYSIAITLADALGMAPGRWKVFASDIDTEVLEKARSGIYRLSELKTLSPQQLQRYFMRGTGPH  101 (193)
T ss_dssp             CSCEEEEESCCTT-THHHHHHHHHHHHHHCSCTTSEEEEEEESCHHHHHHHHHTEEEGGGGTTSCHHHHHHHEEECCTTS
T ss_pred             CCCeEEEEeCCCC-chhHHHHHHHHHHhhhhcCCceEEEeecCChHHhhHhhcCcccHHHHhhhhHHHHhhceeecCCCc
Confidence            4567999999996 5543333    321   123468999999999999998321                  11110  


Q ss_pred             ---------CCCCeEEEEccccchhh-cCCCcceeehhhh-ccCChhHHHHHHHHHHhhccCCcEEEEeecCc
Q 042119          182 ---------FEGRMKFLTRDIMEVKE-QLGEYDCIFLAAL-VGMSKEEKLTILGHIRKYMKDGGILLVRSAKG  243 (286)
Q Consensus       182 ---------l~~~i~f~~~D~~~~~~-~l~~fD~V~~aal-vg~~~~~k~~vl~~l~~~l~pgg~lv~r~~~g  243 (286)
                               +...+.|...+..+... ..++||+|+.-.+ +-++.+.+.++++.+++.|+|||.|++-.+..
T Consensus       102 ~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~fDvI~CRNVLiYf~~~~~~~vl~~l~~~L~pGG~L~lG~sE~  174 (193)
T d1af7a2         102 EGLVRVRQELANYVEFSSVNLLEKQYNVPGPFDAIFCRNVMIYFDKTTQEDILRRFVPLLKPDGLLFAGHSEN  174 (193)
T ss_dssp             CSEEEECHHHHTTEEEEECCTTCSSCCCCCCEEEEEECSSGGGSCHHHHHHHHHHHGGGEEEEEEEEECTTCC
T ss_pred             cceeehHHHHHHHHHHhhhhccccccCCCCCccEEEeehhHHhcCHHHHHHHHHHHHHHhCCCcEEEEecCcc
Confidence                     11234566566544222 2357999997543 46788889999999999999999999876544

>d1piwa2 c.2.1.1 (A:153-320) Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Cinnamyl alcohol dehydrogenase, ADH6
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.49  E-value=2.4e-08  Score=81.69  Aligned_cols=107  Identities=21%  Similarity=0.182  Sum_probs=76.1

Q ss_pred             HHHHHhcCCCCCCEEEEeccCCChhhHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEccccchh-h
Q 042119          120 YTILSENGVVQPKKVAFVGSGPMPLTSIIMAKHHLTSTHFDNFDIDEAANDVARSIVASDAEFEGRMKFLTRDIMEVK-E  198 (286)
Q Consensus       120 ~~~l~~~~~~~~~~VL~IG~G~lp~tai~lA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~g~l~~~i~f~~~D~~~~~-~  198 (286)
                      +.++.+.+++++++|+.+|+|++|+.++.+|+.  .|++|+++|.+++.++.|++    +|.  + -.+...+-.+.. .
T Consensus        17 ~~al~~~~~~~g~~vlI~GaG~vG~~a~q~ak~--~G~~vi~~~~~~~k~~~a~~----lGa--~-~~i~~~~~~~~~~~   87 (168)
T d1piwa2          17 YSPLVRNGCGPGKKVGIVGLGGIGSMGTLISKA--MGAETYVISRSSRKREDAMK----MGA--D-HYIATLEEGDWGEK   87 (168)
T ss_dssp             HHHHHHTTCSTTCEEEEECCSHHHHHHHHHHHH--HTCEEEEEESSSTTHHHHHH----HTC--S-EEEEGGGTSCHHHH
T ss_pred             HHHHHHhCcCCCCEEEEECCCCcchhHHHHhhh--ccccccccccchhHHHHhhc----cCC--c-EEeeccchHHHHHh
Confidence            456667788999999999999999999999994  79999999999999998877    462  2 222222222222 2


Q ss_pred             cCCCcceeehhhhccCChhHHHHHHHHHHhhccCCcEEEEee
Q 042119          199 QLGEYDCIFLAALVGMSKEEKLTILGHIRKYMKDGGILLVRS  240 (286)
Q Consensus       199 ~l~~fD~V~~aalvg~~~~~k~~vl~~l~~~l~pgg~lv~r~  240 (286)
                      ..+.||+|+.....+.+     ..++...+.++|||++++-.
T Consensus        88 ~~~~~d~vi~~~~~~~~-----~~~~~~~~~l~~~G~iv~~G  124 (168)
T d1piwa2          88 YFDTFDLIVVCASSLTD-----IDFNIMPKAMKVGGRIVSIS  124 (168)
T ss_dssp             SCSCEEEEEECCSCSTT-----CCTTTGGGGEEEEEEEEECC
T ss_pred             hhcccceEEEEecCCcc-----chHHHHHHHhhccceEEEec
Confidence            23479998865332111     12446788999999999875

>d1xdza_ c.66.1.20 (A:) Glucose-inhibited division protein B (GidB) {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Glucose-inhibited division protein B (GidB)
domain: Glucose-inhibited division protein B (GidB)
species: Bacillus subtilis [TaxId: 1423]

Probab=98.49  E-value=2.3e-07  Score=80.80  Aligned_cols=104  Identities=13%  Similarity=0.127  Sum_probs=87.4

Q ss_pred             CCCEEEEeccCCChhhHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEccccchhhc---CCCccee
Q 042119          130 QPKKVAFVGSGPMPLTSIIMAKHHLTSTHFDNFDIDEAANDVARSIVASDAEFEGRMKFLTRDIMEVKEQ---LGEYDCI  206 (286)
Q Consensus       130 ~~~~VL~IG~G~lp~tai~lA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~g~l~~~i~f~~~D~~~~~~~---l~~fD~V  206 (286)
                      .+.+++||||| .|+..+.+|= ..|+.+|+-+|.+...++.-+.+++.+|+  +++.++++.+.++...   ...||+|
T Consensus        70 ~~~~ilDiGSG-aGfPGi~laI-~~p~~~v~Lves~~KK~~FL~~v~~~L~L--~n~~i~~~R~E~~~~~~~~~~~~D~v  145 (239)
T d1xdza_          70 QVNTICDVGAG-AGFPSLPIKI-CFPHLHVTIVDSLNKRITFLEKLSEALQL--ENTTFCHDRAETFGQRKDVRESYDIV  145 (239)
T ss_dssp             GCCEEEEECSS-SCTTHHHHHH-HCTTCEEEEEESCHHHHHHHHHHHHHHTC--SSEEEEESCHHHHTTCTTTTTCEEEE
T ss_pred             CCCeEEeecCC-CchHHHHHHH-hCCCccceeecchHHHHHHHHHHHHHhCC--CCcEEEeehhhhccccccccccceEE
Confidence            46799999999 5999999997 58999999999999999999999999994  6899999998776432   2469999


Q ss_pred             ehhhhccCChhHHHHHHHHHHhhccCCcEEEEeecC
Q 042119          207 FLAALVGMSKEEKLTILGHIRKYMKDGGILLVRSAK  242 (286)
Q Consensus       207 ~~aalvg~~~~~k~~vl~~l~~~l~pgg~lv~r~~~  242 (286)
                      ..-|+.     +-..+++-..+.+++||.+++--+.
T Consensus       146 ~sRAva-----~l~~ll~~~~~~l~~~g~~i~~KG~  176 (239)
T d1xdza_         146 TARAVA-----RLSVLSELCLPLVKKNGLFVALKAA  176 (239)
T ss_dssp             EEECCS-----CHHHHHHHHGGGEEEEEEEEEEECC
T ss_pred             EEhhhh-----CHHHHHHHHhhhcccCCEEEEECCC
Confidence            866552     4556999999999999999887543

>d1llua2 c.2.1.1 (A:144-309) Alcohol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=98.48  E-value=4.4e-08  Score=79.49  Aligned_cols=104  Identities=18%  Similarity=0.279  Sum_probs=74.3

Q ss_pred             HHHHHhcCCCCCCEEEEeccCCChhhHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEccccchh--
Q 042119          120 YTILSENGVVQPKKVAFVGSGPMPLTSIIMAKHHLTSTHFDNFDIDEAANDVARSIVASDAEFEGRMKFLTRDIMEVK--  197 (286)
Q Consensus       120 ~~~l~~~~~~~~~~VL~IG~G~lp~tai~lA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~g~l~~~i~f~~~D~~~~~--  197 (286)
                      +.++.+..++++++|+.+|+|++|+.++.+|+.  .|++|+++|.+++..+.+++    +|.  +  .++..+-.+..  
T Consensus        17 ~~al~~~~~~~g~~VlV~GaG~vG~~~~~~ak~--~G~~Vi~~~~~~~~~~~a~~----~Ga--~--~~i~~~~~~~~~~   86 (166)
T d1llua2          17 YKGLKQTNARPGQWVAISGIGGLGHVAVQYARA--MGLHVAAIDIDDAKLELARK----LGA--S--LTVNARQEDPVEA   86 (166)
T ss_dssp             HHHHHHHTCCTTCEEEEECCSHHHHHHHHHHHH--TTCEEEEEESCHHHHHHHHH----TTC--S--EEEETTTSCHHHH
T ss_pred             HHHHHHhCCCCCCEEEEeeccccHHHHHHHHHH--cCCccceecchhhHHHhhhc----cCc--c--ccccccchhHHHH
Confidence            445566778999999999999999999999994  68999999999999988876    562  1  22222212211  


Q ss_pred             --hcCCCcceeehhhhccCChhHHHHHHHHHHhhccCCcEEEEee
Q 042119          198 --EQLGEYDCIFLAALVGMSKEEKLTILGHIRKYMKDGGILLVRS  240 (286)
Q Consensus       198 --~~l~~fD~V~~aalvg~~~~~k~~vl~~l~~~l~pgg~lv~r~  240 (286)
                        ....++|.+++++..     .  ..++...+.++|||++++-.
T Consensus        87 ~~~~~~g~~~~i~~~~~-----~--~~~~~~~~~l~~~G~iv~~G  124 (166)
T d1llua2          87 IQRDIGGAHGVLVTAVS-----N--SAFGQAIGMARRGGTIALVG  124 (166)
T ss_dssp             HHHHHSSEEEEEECCSC-----H--HHHHHHHTTEEEEEEEEECC
T ss_pred             HHHhhcCCccccccccc-----c--hHHHHHHHHhcCCcEEEEEE
Confidence              112345655555432     2  35778889999999999865

>d1uufa2 c.2.1.1 (A:145-312) Hypothetical protein YahK {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Hypothetical protein YahK
species: Escherichia coli [TaxId: 562]

Probab=98.44  E-value=1.6e-07  Score=76.56  Aligned_cols=106  Identities=23%  Similarity=0.277  Sum_probs=77.3

Q ss_pred             HHHHHhcCCCCCCEEEEeccCCChhhHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEccccchhhc
Q 042119          120 YTILSENGVVQPKKVAFVGSGPMPLTSIIMAKHHLTSTHFDNFDIDEAANDVARSIVASDAEFEGRMKFLTRDIMEVKEQ  199 (286)
Q Consensus       120 ~~~l~~~~~~~~~~VL~IG~G~lp~tai~lA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~g~l~~~i~f~~~D~~~~~~~  199 (286)
                      +.++.+..++++++|+.+|+|++|+.++.+|+.  .|++++++|.+++..+++++    +|.   ...+...+-......
T Consensus        20 y~al~~~~~~~G~~VlI~GaG~vG~~a~qlak~--~Ga~~i~~~~~~~~~~~a~~----lGa---d~~i~~~~~~~~~~~   90 (168)
T d1uufa2          20 YSPLRHWQAGPGKKVGVVGIGGLGHMGIKLAHA--MGAHVVAFTTSEAKREAAKA----LGA---DEVVNSRNADEMAAH   90 (168)
T ss_dssp             HHHHHHTTCCTTCEEEEECCSHHHHHHHHHHHH--TTCEEEEEESSGGGHHHHHH----HTC---SEEEETTCHHHHHTT
T ss_pred             HHHHHHhCCCCCCEEEEeccchHHHHHHHHhhc--ccccchhhccchhHHHHHhc----cCC---cEEEECchhhHHHHh
Confidence            556677788999999999999999999999994  69999999999998877765    562   222222222222233


Q ss_pred             CCCcceeehhhhccCChhHHHHHHHHHHhhccCCcEEEEeec
Q 042119          200 LGEYDCIFLAALVGMSKEEKLTILGHIRKYMKDGGILLVRSA  241 (286)
Q Consensus       200 l~~fD~V~~aalvg~~~~~k~~vl~~l~~~l~pgg~lv~r~~  241 (286)
                      .++||+|+.+.-..       ..++...+.++|||++++-..
T Consensus        91 ~~~~D~vid~~g~~-------~~~~~~~~~l~~~G~iv~~G~  125 (168)
T d1uufa2          91 LKSFDFILNTVAAP-------HNLDDFTTLLKRDGTMTLVGA  125 (168)
T ss_dssp             TTCEEEEEECCSSC-------CCHHHHHTTEEEEEEEEECCC
T ss_pred             cCCCceeeeeeecc-------hhHHHHHHHHhcCCEEEEecc
Confidence            35799999765321       235567789999999998753

>d2ifta1 c.66.1.46 (A:11-193) Putative methylase HI0767 {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: YhhF-like
domain: Putative methylase HI0767
species: Haemophilus influenzae [TaxId: 727]

Probab=98.40  E-value=9.5e-07  Score=73.28  Aligned_cols=108  Identities=9%  Similarity=0.155  Sum_probs=82.0

Q ss_pred             CCCEEEEeccCCChhhHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEccccchhhc---CCCccee
Q 042119          130 QPKKVAFVGSGPMPLTSIIMAKHHLTSTHFDNFDIDEAANDVARSIVASDAEFEGRMKFLTRDIMEVKEQ---LGEYDCI  206 (286)
Q Consensus       130 ~~~~VL~IG~G~lp~tai~lA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~g~l~~~i~f~~~D~~~~~~~---l~~fD~V  206 (286)
                      .+.+|||+-||++.++.-.+.+   .-.+|+.||.|+.+++..+++++.++.-.....+++.|+.+....   ...||+|
T Consensus        43 ~~~~vLDlFaGsG~~glEalSR---GA~~v~fVE~~~~a~~~ik~Ni~~l~~~~~~~~~~~~d~~~~l~~~~~~~~fDlI  119 (183)
T d2ifta1          43 HQSECLDGFAGSGSLGFEALSR---QAKKVTFLELDKTVANQLKKNLQTLKCSSEQAEVINQSSLDFLKQPQNQPHFDVV  119 (183)
T ss_dssp             TTCEEEETTCTTCHHHHHHHHT---TCSEEEEECSCHHHHHHHHHHHHHTTCCTTTEEEECSCHHHHTTSCCSSCCEEEE
T ss_pred             ccceEeecccCccceeeeeeee---cceeeEEeecccchhhhHhhHHhhhcccccccccccccccccccccccCCcccEE
Confidence            5689999999988777666654   344999999999999999999999983234678888888665432   2359999


Q ss_pred             ehhhhccCChhHHHHHHHHHHh--hccCCcEEEEeecC
Q 042119          207 FLAALVGMSKEEKLTILGHIRK--YMKDGGILLVRSAK  242 (286)
Q Consensus       207 ~~aalvg~~~~~k~~vl~~l~~--~l~pgg~lv~r~~~  242 (286)
                      |++---.  .....++++.+..  .++++|++++....
T Consensus       120 FlDPPY~--~~~~~~~l~~l~~~~~L~~~~liiiE~~~  155 (183)
T d2ifta1         120 FLDPPFH--FNLAEQAISLLCENNWLKPNALIYVETEK  155 (183)
T ss_dssp             EECCCSS--SCHHHHHHHHHHHTTCEEEEEEEEEEEES
T ss_pred             EechhHh--hhhHHHHHHHHHHhCCcCCCcEEEEEecC
Confidence            9884321  2346678888865  69999999997643

>d1rjwa2 c.2.1.1 (A:138-305) Alcohol dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=98.40  E-value=1.6e-07  Score=75.76  Aligned_cols=107  Identities=19%  Similarity=0.261  Sum_probs=74.0

Q ss_pred             HHHHHhcCCCCCCEEEEeccCCChhhHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEccccch-hh
Q 042119          120 YTILSENGVVQPKKVAFVGSGPMPLTSIIMAKHHLTSTHFDNFDIDEAANDVARSIVASDAEFEGRMKFLTRDIMEV-KE  198 (286)
Q Consensus       120 ~~~l~~~~~~~~~~VL~IG~G~lp~tai~lA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~g~l~~~i~f~~~D~~~~-~~  198 (286)
                      +.++.+.+++++++|+..|+||+|+.++.+|+.  .|++|+++|.+++..+.+++    +|. ..-+.....|..+. ..
T Consensus        17 ~~al~~~~~~~g~~vlv~G~G~iG~~a~~~a~~--~g~~v~~~~~~~~r~~~~k~----~Ga-~~~~~~~~~~~~~~~~~   89 (168)
T d1rjwa2          17 YKALKVTGAKPGEWVAIYGIGGLGHVAVQYAKA--MGLNVVAVDIGDEKLELAKE----LGA-DLVVNPLKEDAAKFMKE   89 (168)
T ss_dssp             HHHHHHHTCCTTCEEEEECCSTTHHHHHHHHHH--TTCEEEEECSCHHHHHHHHH----TTC-SEEECTTTSCHHHHHHH
T ss_pred             HHHHHHhCCCCCCEEEEeecccchhhhhHHHhc--CCCeEeccCCCHHHhhhhhh----cCc-ceecccccchhhhhccc
Confidence            445566788999999999999999999999994  88999999999999888766    562 11111111122111 11


Q ss_pred             cCCCcceeehhhhccCChhHHHHHHHHHHhhccCCcEEEEee
Q 042119          199 QLGEYDCIFLAALVGMSKEEKLTILGHIRKYMKDGGILLVRS  240 (286)
Q Consensus       199 ~l~~fD~V~~aalvg~~~~~k~~vl~~l~~~l~pgg~lv~r~  240 (286)
                      ...++|.+++++..     .  ..++...+.++|||.+++-.
T Consensus        90 ~~~~~~~~v~~~~~-----~--~~~~~a~~~l~~~G~i~~~g  124 (168)
T d1rjwa2          90 KVGGVHAAVVTAVS-----K--PAFQSAYNSIRRGGACVLVG  124 (168)
T ss_dssp             HHSSEEEEEESSCC-----H--HHHHHHHHHEEEEEEEEECC
T ss_pred             ccCCCceEEeecCC-----H--HHHHHHHHHhccCCceEecc
Confidence            12345555555432     1  46788999999999999875

>d1kola2 c.2.1.1 (A:161-355) Formaldehyde dehydrogenase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Formaldehyde dehydrogenase
species: Pseudomonas putida [TaxId: 303]

Probab=98.40  E-value=7.3e-08  Score=81.11  Aligned_cols=112  Identities=20%  Similarity=0.155  Sum_probs=77.3

Q ss_pred             HHHHhcCCCCCCEEEEeccCCChhhHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEE--EEccccchhh
Q 042119          121 TILSENGVVQPKKVAFVGSGPMPLTSIIMAKHHLTSTHFDNFDIDEAANDVARSIVASDAEFEGRMKF--LTRDIMEVKE  198 (286)
Q Consensus       121 ~~l~~~~~~~~~~VL~IG~G~lp~tai~lA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~g~l~~~i~f--~~~D~~~~~~  198 (286)
                      .++.+.+++++++||.+||||+|+.++.+|+ .....+|+++|.+++.++.|+++    |.   ...+  ...|..+...
T Consensus        16 ~a~~~a~v~~G~tVlV~GaG~vGl~a~~~ak-~~ga~~Vi~~d~~~~rl~~a~~~----Ga---~~~~~~~~~~~~~~i~   87 (195)
T d1kola2          16 HGAVTAGVGPGSTVYVAGAGPVGLAAAASAR-LLGAAVVIVGDLNPARLAHAKAQ----GF---EIADLSLDTPLHEQIA   87 (195)
T ss_dssp             HHHHHTTCCTTCEEEEECCSHHHHHHHHHHH-HTTCSEEEEEESCHHHHHHHHHT----TC---EEEETTSSSCHHHHHH
T ss_pred             HHHHHhCCCCCCEEEEECcCHHHHHHHHHHH-hhcccceeeecccchhhHhhhhc----cc---cEEEeCCCcCHHHHHH
Confidence            3455678899999999999999999999998 45556999999999999988874    52   1111  1122211111


Q ss_pred             ---cCCCcceeehhhhcc---C-----ChhHHHHHHHHHHhhccCCcEEEEee
Q 042119          199 ---QLGEYDCIFLAALVG---M-----SKEEKLTILGHIRKYMKDGGILLVRS  240 (286)
Q Consensus       199 ---~l~~fD~V~~aalvg---~-----~~~~k~~vl~~l~~~l~pgg~lv~r~  240 (286)
                         .-.++|++|.+.-..   +     ......+.++...+.++|||++++-.
T Consensus        88 ~~t~g~g~D~vid~vG~~~~~~~~~~~~~~~~~~~l~~~~~~~r~gG~v~~~G  140 (195)
T d1kola2          88 ALLGEPEVDCAVDAVGFEARGHGHEGAKHEAPATVLNSLMQVTRVAGKIGIPG  140 (195)
T ss_dssp             HHHSSSCEEEEEECCCTTCBCSSTTGGGSBCTTHHHHHHHHHEEEEEEEEECS
T ss_pred             HHhCCCCcEEEEECccccccCCcccceeecCcHHHHHHHHHHHhcCCEEEEee
Confidence               123689998654210   0     00123468999999999999999875

>d1vj0a2 c.2.1.1 (A:156-337) Hypothetical protein TM0436 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Hypothetical protein TM0436
species: Thermotoga maritima [TaxId: 2336]

Probab=98.39  E-value=1.7e-07  Score=77.18  Aligned_cols=105  Identities=17%  Similarity=0.195  Sum_probs=72.5

Q ss_pred             HHHhc-CCCCCCEEEEeccCCChhhHHHHHhhcCCCc-EEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEccccchhh-
Q 042119          122 ILSEN-GVVQPKKVAFVGSGPMPLTSIIMAKHHLTST-HFDNFDIDEAANDVARSIVASDAEFEGRMKFLTRDIMEVKE-  198 (286)
Q Consensus       122 ~l~~~-~~~~~~~VL~IG~G~lp~tai~lA~~~~~g~-~V~~iDid~~ai~~Ar~~~~~~g~l~~~i~f~~~D~~~~~~-  198 (286)
                      ++.+. .++++++||.+|+||+|+.++.+|+.  .|+ +|+++|.+++..+.|++    +|. ..-++....|..+... 
T Consensus        19 al~~~~~~~~G~~VlV~GaG~iG~~~~~~ak~--~Ga~~Vi~~~~~~~~~~~a~~----lGa-~~vi~~~~~~~~~~~~~   91 (182)
T d1vj0a2          19 AFDEYPESFAGKTVVIQGAGPLGLFGVVIARS--LGAENVIVIAGSPNRLKLAEE----IGA-DLTLNRRETSVEERRKA   91 (182)
T ss_dssp             HHHTCSSCCBTCEEEEECCSHHHHHHHHHHHH--TTBSEEEEEESCHHHHHHHHH----TTC-SEEEETTTSCHHHHHHH
T ss_pred             HHHHHhCCCCCCEEEEECCCccchhheecccc--ccccccccccccccccccccc----ccc-eEEEeccccchHHHHHH
Confidence            44343 35789999999999999999999994  677 89999999999998876    452 1111111122211111 


Q ss_pred             -----cCCCcceeehhhhccCChhHHHHHHHHHHhhccCCcEEEEee
Q 042119          199 -----QLGEYDCIFLAALVGMSKEEKLTILGHIRKYMKDGGILLVRS  240 (286)
Q Consensus       199 -----~l~~fD~V~~aalvg~~~~~k~~vl~~l~~~l~pgg~lv~r~  240 (286)
                           .-.+||+||.+.  |.   +  ..++...+.++|||++++-.
T Consensus        92 i~~~~~~~g~Dvvid~v--G~---~--~~~~~a~~~l~~~G~iv~~G  131 (182)
T d1vj0a2          92 IMDITHGRGADFILEAT--GD---S--RALLEGSELLRRGGFYSVAG  131 (182)
T ss_dssp             HHHHTTTSCEEEEEECS--SC---T--THHHHHHHHEEEEEEEEECC
T ss_pred             HHHhhCCCCceEEeecC--Cc---h--hHHHHHHHHhcCCCEEEEEe
Confidence                 113699999664  21   1  36778889999999998765

>d1ixka_ c.66.1.38 (A:) Hypothetical methyltransferase PH1374 {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: NOL1/NOP2/sun
domain: Hypothetical methyltransferase PH1374
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=98.39  E-value=1.2e-06  Score=78.79  Aligned_cols=111  Identities=22%  Similarity=0.206  Sum_probs=87.1

Q ss_pred             CCCCCCEEEEeccCCChhhHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEccccchhhcCCCccee
Q 042119          127 GVVQPKKVAFVGSGPMPLTSIIMAKHHLTSTHFDNFDIDEAANDVARSIVASDAEFEGRMKFLTRDIMEVKEQLGEYDCI  206 (286)
Q Consensus       127 ~~~~~~~VL~IG~G~lp~tai~lA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~g~l~~~i~f~~~D~~~~~~~l~~fD~V  206 (286)
                      .+.++.+|||+.+||+|=|+. +|......+.+++.|+++..+...++.++++|.  .++.+...|..........||.|
T Consensus       113 ~~~~g~~vlD~CAapGgKt~~-l~~~~~~~~~i~a~d~~~~r~~~l~~~~~r~~~--~~i~~~~~d~~~~~~~~~~fD~I  189 (313)
T d1ixka_         113 DPKPGEIVADMAAAPGGKTSY-LAQLMRNDGVIYAFDVDENRLRETRLNLSRLGV--LNVILFHSSSLHIGELNVEFDKI  189 (313)
T ss_dssp             CCCTTCEEEECCSSCSHHHHH-HHHHTTTCSEEEEECSCHHHHHHHHHHHHHHTC--CSEEEESSCGGGGGGGCCCEEEE
T ss_pred             cCCccceeeecccchhhhhHh-hhhhcccccceeeeccCHHHHHHHHHHHHHHHh--hccccccccccccccccccccEE
Confidence            568999999999999776654 554345678999999999999999999999994  67888889987766555679999


Q ss_pred             ehhhh---ccC-----------Ch-------hHHHHHHHHHHhhccCCcEEEEee
Q 042119          207 FLAAL---VGM-----------SK-------EEKLTILGHIRKYMKDGGILLVRS  240 (286)
Q Consensus       207 ~~aal---vg~-----------~~-------~~k~~vl~~l~~~l~pgg~lv~r~  240 (286)
                      ++++-   .|.           ..       .--.+++.+..+.+||||.||+.+
T Consensus       190 LvDaPCSg~G~~~r~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~lk~gG~lVYsT  244 (313)
T d1ixka_         190 LLDAPCTGSGTIHKNPERKWNRTMDDIKFCQGLQMRLLEKGLEVLKPGGILVYST  244 (313)
T ss_dssp             EEECCTTSTTTCC--------CCHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred             EEccccccCCceeeccchhhhhhhhHHHHHHHHHHHHHHhhhheeCCCcEEEEee
Confidence            98752   121           11       113467889999999999999975

>d1uwva2 c.66.1.40 (A:75-432) rRNA (Uracil-5-)-methyltransferase RumA, catalytic domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: (Uracil-5-)-methyltransferase
domain: rRNA (Uracil-5-)-methyltransferase RumA, catalytic domain
species: Escherichia coli [TaxId: 562]

Probab=98.38  E-value=1.3e-06  Score=79.06  Aligned_cols=97  Identities=13%  Similarity=0.107  Sum_probs=75.4

Q ss_pred             CCCCCCEEEEeccCCChhhHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEccccchhhc----CCC
Q 042119          127 GVVQPKKVAFVGSGPMPLTSIIMAKHHLTSTHFDNFDIDEAANDVARSIVASDAEFEGRMKFLTRDIMEVKEQ----LGE  202 (286)
Q Consensus       127 ~~~~~~~VL~IG~G~lp~tai~lA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~g~l~~~i~f~~~D~~~~~~~----l~~  202 (286)
                      ...++++|+|+-||. |.-++.||+   .+.+|+|||+++++++.|+++++..|.  ++++|+.+|+.+....    ...
T Consensus       209 ~~~~~~~vlDLycG~-G~fsl~La~---~~~~V~gvE~~~~ai~~A~~na~~n~i--~n~~~~~~~~~~~~~~~~~~~~~  282 (358)
T d1uwva2         209 DVQPEDRVLDLFCGM-GNFTLPLAT---QAASVVGVEGVPALVEKGQQNARLNGL--QNVTFYHENLEEDVTKQPWAKNG  282 (358)
T ss_dssp             TCCTTCEEEEESCTT-TTTHHHHHT---TSSEEEEEESCHHHHHHHHHHHHHTTC--CSEEEEECCTTSCCSSSGGGTTC
T ss_pred             ccCCCceEEEecccc-cccchhccc---cccEEEeccCcHHHHHHHHHhHHhccc--ccceeeecchhhhhhhhhhhhcc
Confidence            567889999999995 555688988   678999999999999999999999995  7899999998764432    246


Q ss_pred             cceeehhhhc-cCChhHHHHHHHHHHhhccCCcE
Q 042119          203 YDCIFLAALV-GMSKEEKLTILGHIRKYMKDGGI  235 (286)
Q Consensus       203 fD~V~~aalv-g~~~~~k~~vl~~l~~~l~pgg~  235 (286)
                      ||+|+++--= |+   .  ++++.+.+. +|.-+
T Consensus       283 ~d~vilDPPR~G~---~--~~~~~l~~~-~~~~i  310 (358)
T d1uwva2         283 FDKVLLDPARAGA---A--GVMQQIIKL-EPIRI  310 (358)
T ss_dssp             CSEEEECCCTTCC---H--HHHHHHHHH-CCSEE
T ss_pred             CceEEeCCCCccH---H--HHHHHHHHc-CCCEE
Confidence            9999988432 32   2  367777764 55543

>d1wg8a2 c.66.1.23 (A:5-108,A:207-284) TM0872, methyltransferase domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: MraW-like putative methyltransferases
domain: TM0872, methyltransferase domain
species: Thermus thermophilus [TaxId: 274]

Probab=98.34  E-value=1.3e-06  Score=72.71  Aligned_cols=107  Identities=15%  Similarity=0.097  Sum_probs=82.7

Q ss_pred             CCCCCCEEEEeccCCChhhHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEccccchhh-----cCC
Q 042119          127 GVVQPKKVAFVGSGPMPLTSIIMAKHHLTSTHFDNFDIDEAANDVARSIVASDAEFEGRMKFLTRDIMEVKE-----QLG  201 (286)
Q Consensus       127 ~~~~~~~VL~IG~G~lp~tai~lA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~g~l~~~i~f~~~D~~~~~~-----~l~  201 (286)
                      .+.++..++|..+|++|.|...|-+    +++|+|+|+||+|+..|++.      ..+++.+++++-.++..     ..+
T Consensus        15 ~~~~g~~~vD~T~G~GGhs~~iL~~----~~~viaiD~D~~ai~~a~~~------~~~~~~~~~~~f~~~~~~l~~~~~~   84 (182)
T d1wg8a2          15 AVRPGGVYVDATLGGAGHARGILER----GGRVIGLDQDPEAVARAKGL------HLPGLTVVQGNFRHLKRHLAALGVE   84 (182)
T ss_dssp             TCCTTCEEEETTCTTSHHHHHHHHT----TCEEEEEESCHHHHHHHHHT------CCTTEEEEESCGGGHHHHHHHTTCS
T ss_pred             CCCCCCEEEEeCCCCcHHHHHHhcc----cCcEEEEhhhhhHHHHHhhc------cccceeEeehHHHHHHHHHHHcCCC
Confidence            6789999999999999998887754    57999999999999999875      23689999998776543     234


Q ss_pred             CcceeehhhhccCC--------hhHHHHHHHHHHhhccCCcEEEEeecCc
Q 042119          202 EYDCIFLAALVGMS--------KEEKLTILGHIRKYMKDGGILLVRSAKG  243 (286)
Q Consensus       202 ~fD~V~~aalvg~~--------~~~k~~vl~~l~~~l~pgg~lv~r~~~g  243 (286)
                      .+|.|+++-.+...        .......|+...+.++|||++++-+.|+
T Consensus        85 ~vdgIl~DLGvSs~qld~~~re~~~~~~~L~~~~~~lk~gg~~~ii~fhs  134 (182)
T d1wg8a2          85 RVDGILADLGVSSFHLDDPSDELNALKEFLEQAAEVLAPGGRLVVIAFHS  134 (182)
T ss_dssp             CEEEEEEECSCCHHHHHCGGTHHHHHHHHHHHHHHHEEEEEEEEEEECSH
T ss_pred             ccCEEEEEccCCHHHhhcchHHHHHHHHHHHHHHhhhCCCCeEEEEeccc
Confidence            69999876533110        0123457889999999999999987654

>d1f8fa2 c.2.1.1 (A:163-336) Benzyl alcohol dehydrogenase {Acinetobacter calcoaceticus [TaxId: 471]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Benzyl alcohol dehydrogenase
species: Acinetobacter calcoaceticus [TaxId: 471]

Probab=98.28  E-value=2.4e-07  Score=75.94  Aligned_cols=105  Identities=16%  Similarity=0.158  Sum_probs=73.0

Q ss_pred             HHhcCCCCCCEEEEeccCCChhhHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEccccchhhcC--
Q 042119          123 LSENGVVQPKKVAFVGSGPMPLTSIIMAKHHLTSTHFDNFDIDEAANDVARSIVASDAEFEGRMKFLTRDIMEVKEQL--  200 (286)
Q Consensus       123 l~~~~~~~~~~VL~IG~G~lp~tai~lA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~g~l~~~i~f~~~D~~~~~~~l--  200 (286)
                      +.+..++++++|+.+|+|++|+.++.+|+. ....+|+..|.+++..+.|+++    |. ..-+.....|..+....+  
T Consensus        21 ~~~~~~~~g~~VlI~G~G~iG~~~~~~ak~-~g~~~v~~~~~~~~k~~~a~~~----Ga-~~~i~~~~~~~~~~i~~~t~   94 (174)
T d1f8fa2          21 INALKVTPASSFVTWGAGAVGLSALLAAKV-CGASIIIAVDIVESRLELAKQL----GA-THVINSKTQDPVAAIKEITD   94 (174)
T ss_dssp             HTTTCCCTTCEEEEESCSHHHHHHHHHHHH-HTCSEEEEEESCHHHHHHHHHH----TC-SEEEETTTSCHHHHHHHHTT
T ss_pred             HHhhCCCCCCEEEEeCCCHHHhhhhhcccc-cccceeeeeccHHHHHHHHHHc----CC-eEEEeCCCcCHHHHHHHHcC
Confidence            334567999999999999999999999984 4345778899999999888874    62 111111112222211111  


Q ss_pred             CCcceeehhhhccCChhHHHHHHHHHHhhccCCcEEEEee
Q 042119          201 GEYDCIFLAALVGMSKEEKLTILGHIRKYMKDGGILLVRS  240 (286)
Q Consensus       201 ~~fD~V~~aalvg~~~~~k~~vl~~l~~~l~pgg~lv~r~  240 (286)
                      ++||+||.+.-.       ...++...+.++|+|++++-.
T Consensus        95 gg~D~vid~~G~-------~~~~~~~~~~~~~~G~i~~~G  127 (174)
T d1f8fa2          95 GGVNFALESTGS-------PEILKQGVDALGILGKIAVVG  127 (174)
T ss_dssp             SCEEEEEECSCC-------HHHHHHHHHTEEEEEEEEECC
T ss_pred             CCCcEEEEcCCc-------HHHHHHHHhcccCceEEEEEe
Confidence            369999976532       146778889999999999865

>d2bm8a1 c.66.1.50 (A:2-233) Cephalosporin hydroxylase CmcI {Streptomyces clavuligerus [TaxId: 1901]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: CmcI-like
domain: Cephalosporin hydroxylase CmcI
species: Streptomyces clavuligerus [TaxId: 1901]

Probab=98.26  E-value=4.2e-07  Score=78.70  Aligned_cols=102  Identities=9%  Similarity=0.131  Sum_probs=71.2

Q ss_pred             CCCCEEEEeccCCChhhHHHHHhh---cCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEccccchhh--cCC--
Q 042119          129 VQPKKVAFVGSGPMPLTSIIMAKH---HLTSTHFDNFDIDEAANDVARSIVASDAEFEGRMKFLTRDIMEVKE--QLG--  201 (286)
Q Consensus       129 ~~~~~VL~IG~G~lp~tai~lA~~---~~~g~~V~~iDid~~ai~~Ar~~~~~~g~l~~~i~f~~~D~~~~~~--~l~--  201 (286)
                      .+|++|++||++. |.|++++|..   ..+.++|+++|+++.....+.      . ..++|+++.+|..+...  .+.  
T Consensus        79 ~KPk~ILEIGv~~-GgS~~~~a~~l~~~~~~~kI~giDId~~~~~~~~------~-~~~~I~~i~gDs~~~~~~~~l~~~  150 (232)
T d2bm8a1          79 LRPRTIVELGVYN-GGSLAWFRDLTKIMGIDCQVIGIDRDLSRCQIPA------S-DMENITLHQGDCSDLTTFEHLREM  150 (232)
T ss_dssp             HCCSEEEEECCTT-SHHHHHHHHHHHHTTCCCEEEEEESCCTTCCCCG------G-GCTTEEEEECCSSCSGGGGGGSSS
T ss_pred             hCCCEEEEECCCC-chHHHHHHHHHHhcCCCceEEecCcChhhhhhhh------c-cccceeeeecccccHHHHHHHHhc
Confidence            3689999999985 6788888853   236799999999986543321      1 24799999999764322  222  


Q ss_pred             CcceeehhhhccCChhHHHHHHHHHHhhccCCcEEEEeec
Q 042119          202 EYDCIFLAALVGMSKEEKLTILGHIRKYMKDGGILLVRSA  241 (286)
Q Consensus       202 ~fD~V~~aalvg~~~~~k~~vl~~l~~~l~pgg~lv~r~~  241 (286)
                      .+|+||+++... ......+ + ...+.|+|||++++.+.
T Consensus       151 ~~dlIfID~~H~-~~~v~~~-~-~~~~lLk~GG~iIveD~  187 (232)
T d2bm8a1         151 AHPLIFIDNAHA-NTFNIMK-W-AVDHLLEEGDYFIIEDM  187 (232)
T ss_dssp             CSSEEEEESSCS-SHHHHHH-H-HHHHTCCTTCEEEECSC
T ss_pred             CCCEEEEcCCcc-hHHHHHH-H-HHhcccCcCCEEEEEcC
Confidence            589999887532 2223333 2 35689999999999874

>d2b9ea1 c.66.1.38 (A:133-425) NOL1R {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: NOL1/NOP2/sun
domain: NOL1R
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.24  E-value=6e-06  Score=73.35  Aligned_cols=110  Identities=18%  Similarity=0.114  Sum_probs=80.1

Q ss_pred             CCCCCCEEEEeccCCChhhHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEccccchhhcC---CCc
Q 042119          127 GVVQPKKVAFVGSGPMPLTSIIMAKHHLTSTHFDNFDIDEAANDVARSIVASDAEFEGRMKFLTRDIMEVKEQL---GEY  203 (286)
Q Consensus       127 ~~~~~~~VL~IG~G~lp~tai~lA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~g~l~~~i~f~~~D~~~~~~~l---~~f  203 (286)
                      .+.++.+|||+.+||+|=|+. +|.....++.|+++|+++..++..+++++++|.  .++.+...|...+....   ..|
T Consensus        91 ~~~~g~~vLD~cAapGgKt~~-la~l~~~~~~i~a~d~~~~R~~~l~~~l~r~g~--~~~~~~~~d~~~~~~~~~~~~~f  167 (293)
T d2b9ea1          91 DPPPGSHVIDACAAPGNKTSH-LAALLKNQGKIFAFDLDAKRLASMATLLARAGV--SCCELAEEDFLAVSPSDPRYHEV  167 (293)
T ss_dssp             CCCTTCEEEESSCTTCHHHHH-HHHHHTTCSEEEEEESCHHHHHHHHHHHHHTTC--CSEEEEECCGGGSCTTCGGGTTE
T ss_pred             CCCccceEEecccchhhHHHH-HHHHhcCCceEeeecCCHHHHHHHHHHHHhcCc--cceeeeehhhhhhccccccccee
Confidence            568899999999999776554 554345678999999999999999999999995  67999999987654432   469


Q ss_pred             ceeehhhh---ccC---Chh-----------------HHHHHHHHHHhhccCCcEEEEee
Q 042119          204 DCIFLAAL---VGM---SKE-----------------EKLTILGHIRKYMKDGGILLVRS  240 (286)
Q Consensus       204 D~V~~aal---vg~---~~~-----------------~k~~vl~~l~~~l~pgg~lv~r~  240 (286)
                      |.|++++-   .|.   ..+                 .-.+++.+.. .++|||.||+.+
T Consensus       168 D~VL~DaPCSg~G~~~r~p~~~~~~~~~~~~~~~l~~~Q~~il~~a~-~l~~gG~lvYsT  226 (293)
T d2b9ea1         168 HYILLDPSCSGSGMPSRQLEEPGAGTPSPVRLHALAGFQQRALCHAL-TFPSLQRLVYST  226 (293)
T ss_dssp             EEEEECCCCCC------------------CCHHHHHHHHHHHHHHHT-TCTTCCEEEEEE
T ss_pred             eEEeecCcccchhhhcccchhhccCCcchhhHHHHhhhhHHhHHHhh-hcccccEEEEee
Confidence            99998752   111   000                 0123444545 479999999865

>d1l7da1 c.2.1.4 (A:144-326) Nicotinamide nucleotide transhydrogenase dI component {Rhodospirillum rubrum [TaxId: 1085]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Nicotinamide nucleotide transhydrogenase dI component
species: Rhodospirillum rubrum [TaxId: 1085]

Probab=98.24  E-value=1.3e-07  Score=79.11  Aligned_cols=110  Identities=22%  Similarity=0.246  Sum_probs=77.4

Q ss_pred             CCCCEEEEeccCCChhhHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCC--C--CCe------------EEEEcc
Q 042119          129 VQPKKVAFVGSGPMPLTSIIMAKHHLTSTHFDNFDIDEAANDVARSIVASDAEF--E--GRM------------KFLTRD  192 (286)
Q Consensus       129 ~~~~~VL~IG~G~lp~tai~lA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~g~l--~--~~i------------~f~~~D  192 (286)
                      .+|.+|+.||+|..|+.|+..|+.  .|++|+.+|++++..+..+++..++=.+  .  ...            +|....
T Consensus        27 V~pa~VvViGaGvaG~~Aa~~A~~--lGA~V~v~D~~~~~~~~l~~l~~~~i~~~~~~~~~~~~~~gyA~~~s~~~~~~~  104 (183)
T d1l7da1          27 VPPARVLVFGVGVAGLQAIATAKR--LGAVVMATDVRAATKEQVESLGGKFITVDDEAMKTAETAGGYAKEMGEEFRKKQ  104 (183)
T ss_dssp             ECCCEEEEECCSHHHHHHHHHHHH--TTCEEEEECSCSTTHHHHHHTTCEECCC-----------------------CCH
T ss_pred             cCCcEEEEEcCcHHHHHHHHHHHH--cCCEEEEEeccHHHHHHHHHhhcceEEEeccccccccccccchhhcCHHHHHHH
Confidence            678999999999999999999995  8999999999999988877763221100  0  000            011111


Q ss_pred             ccchhhcCCCcceeehhhhccCChhHHHHHHHHHHhhccCCcEEEEeec
Q 042119          193 IMEVKEQLGEYDCIFLAALVGMSKEEKLTILGHIRKYMKDGGILLVRSA  241 (286)
Q Consensus       193 ~~~~~~~l~~fD~V~~aalvg~~~~~k~~vl~~l~~~l~pgg~lv~r~~  241 (286)
                      -..+...+.+.|+|+.++++...+.+|. +-+++.+.||||.+++--..
T Consensus       105 ~~~l~~~l~~aDlVI~talipG~~aP~l-it~~mv~~Mk~GSVIVDvai  152 (183)
T d1l7da1         105 AEAVLKELVKTDIAITTALIPGKPAPVL-ITEEMVTKMKPGSVIIDLAV  152 (183)
T ss_dssp             HHHHHHHHTTCSEEEECCCCTTSCCCCC-SCHHHHTTSCTTCEEEETTG
T ss_pred             HHHHHHHHHhhhhheeeeecCCccccee-ehHHHHHhcCCCcEEEEEee
Confidence            1112233567999999999854445553 77889999999999987654

>d1sqga2 c.66.1.38 (A:145-428) Ribosomal RNA small subunit methyltransferase B, RsmB (Sun, Fmu/Fmv), C-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: NOL1/NOP2/sun
domain: Ribosomal RNA small subunit methyltransferase B, RsmB (Sun, Fmu/Fmv), C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=98.21  E-value=4.1e-06  Score=74.13  Aligned_cols=110  Identities=17%  Similarity=0.106  Sum_probs=81.1

Q ss_pred             CCCCCCEEEEeccCCChhhHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEccccchhh-cCCCcce
Q 042119          127 GVVQPKKVAFVGSGPMPLTSIIMAKHHLTSTHFDNFDIDEAANDVARSIVASDAEFEGRMKFLTRDIMEVKE-QLGEYDC  205 (286)
Q Consensus       127 ~~~~~~~VL~IG~G~lp~tai~lA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~g~l~~~i~f~~~D~~~~~~-~l~~fD~  205 (286)
                      .+.++.+|||+.+||+|=|+.. |. ...+++|+++|+++..+...++.++++|.  ..+.....|...... ....||.
T Consensus        99 ~~~~g~~vLD~CAaPGgKt~~l-a~-l~~~~~i~a~d~~~~R~~~l~~~~~r~g~--~~~~~~~~~~~~~~~~~~~~fd~  174 (284)
T d1sqga2          99 APQNGEHILDLCAAPGGKTTHI-LE-VAPEAQVVAVDIDEQRLSRVYDNLKRLGM--KATVKQGDGRYPSQWCGEQQFDR  174 (284)
T ss_dssp             CCCTTCEEEEESCTTCHHHHHH-HH-HCTTCEEEEEESSTTTHHHHHHHHHHTTC--CCEEEECCTTCTHHHHTTCCEEE
T ss_pred             CccccceeEeccCccccchhhh-hh-hhhhhhhhhhhcchhhhhhHhhhhhcccc--cceeeeccccccchhcccccccE
Confidence            5688999999999998888655 44 35678999999999999999999999994  345444444332222 2246999


Q ss_pred             eehhhh---cc---CChhH---------------HHHHHHHHHhhccCCcEEEEee
Q 042119          206 IFLAAL---VG---MSKEE---------------KLTILGHIRKYMKDGGILLVRS  240 (286)
Q Consensus       206 V~~aal---vg---~~~~~---------------k~~vl~~l~~~l~pgg~lv~r~  240 (286)
                      |++++-   .|   -+++.               -.++|.+..+.+||||+||+.+
T Consensus       175 IL~DaPCSg~G~~rr~p~~~~~~~~~~~~~l~~lQ~~iL~~a~~~lk~gG~lvYsT  230 (284)
T d1sqga2         175 ILLDAPCSATGVIRRHPDIKWLRRDRDIPELAQLQSEILDAIWPHLKTGGTLVYAT  230 (284)
T ss_dssp             EEEECCCCCGGGTTTCTTHHHHCCTTHHHHHHHHHHHHHHHHGGGEEEEEEEEEEE
T ss_pred             EEEeccccccCccccccchhhccccchhhHHHHHHHHHHHHHHHhcCCCceEEEee
Confidence            998762   11   11111               3468999999999999999975

>d1qama_ c.66.1.24 (A:) rRNA adenine dimethylase {Bacillus subtilis, Ermc' [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: rRNA adenine dimethylase-like
domain: rRNA adenine dimethylase
species: Bacillus subtilis, Ermc' [TaxId: 1423]

Probab=98.21  E-value=2.5e-06  Score=73.68  Aligned_cols=66  Identities=15%  Similarity=0.249  Sum_probs=53.2

Q ss_pred             hcCCCCCCEEEEeccCCChhhHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEccccchhh
Q 042119          125 ENGVVQPKKVAFVGSGPMPLTSIIMAKHHLTSTHFDNFDIDEAANDVARSIVASDAEFEGRMKFLTRDIMEVKE  198 (286)
Q Consensus       125 ~~~~~~~~~VL~IG~G~lp~tai~lA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~g~l~~~i~f~~~D~~~~~~  198 (286)
                      ...+.++++||+||+|+|-+|... ++   .+.+|++||+|+..++..++....    .++++++.+|+.++..
T Consensus        16 ~~~~~~~d~VlEIGpG~G~LT~~L-l~---~~~~v~avE~D~~l~~~l~~~~~~----~~n~~i~~~D~l~~~~   81 (235)
T d1qama_          16 NIRLNEHDNIFEIGSGKGHFTLEL-VQ---RCNFVTAIEIDHKLCKTTENKLVD----HDNFQVLNKDILQFKF   81 (235)
T ss_dssp             TCCCCTTCEEEEECCTTSHHHHHH-HH---HSSEEEEECSCHHHHHHHHHHTTT----CCSEEEECCCGGGCCC
T ss_pred             hcCCCCCCeEEEECCCchHHHHHH-Hh---CcCceEEEeeccchHHHHHHHhhc----ccchhhhhhhhhhccc
Confidence            445689999999999988777655 45   468999999999999999886432    2589999999977543

>d1e3ia2 c.2.1.1 (A:168-341) Alcohol dehydrogenase {Mouse (Mus musculus), class II [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Mouse (Mus musculus), class II [TaxId: 10090]

Probab=98.20  E-value=7.3e-07  Score=73.46  Aligned_cols=103  Identities=20%  Similarity=0.138  Sum_probs=72.9

Q ss_pred             hcCCCCCCEEEEeccCCChhhHHHHHhhcCCCc-EEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEcc--ccchhh--c
Q 042119          125 ENGVVQPKKVAFVGSGPMPLTSIIMAKHHLTST-HFDNFDIDEAANDVARSIVASDAEFEGRMKFLTRD--IMEVKE--Q  199 (286)
Q Consensus       125 ~~~~~~~~~VL~IG~G~lp~tai~lA~~~~~g~-~V~~iDid~~ai~~Ar~~~~~~g~l~~~i~f~~~D--~~~~~~--~  199 (286)
                      ...++++++|+.+||||+|+.++.+|+.  .|+ .|+..|++++..+.|++    +|. ..-+++...|  ......  .
T Consensus        23 ~a~v~~G~~VlV~G~G~iGl~a~~~ak~--~Ga~~Vi~~d~~~~r~~~a~~----~Ga-~~~i~~~~~~~~~~~~~~~~~   95 (174)
T d1e3ia2          23 TAKVTPGSTCAVFGLGCVGLSAIIGCKI--AGASRIIAIDINGEKFPKAKA----LGA-TDCLNPRELDKPVQDVITELT   95 (174)
T ss_dssp             TSCCCTTCEEEEECCSHHHHHHHHHHHH--TTCSEEEEECSCGGGHHHHHH----TTC-SEEECGGGCSSCHHHHHHHHH
T ss_pred             hhCCCCCCEEEEECCChHHHHHHHHHHH--hCCceeeeeccchHHHHHHHH----hCC-CcccCCccchhhhhhhHhhhh
Confidence            4567999999999999999999999994  565 79999999999888887    452 1111111112  111111  1


Q ss_pred             CCCcceeehhhhccCChhHHHHHHHHHHhhccCC-cEEEEeec
Q 042119          200 LGEYDCIFLAALVGMSKEEKLTILGHIRKYMKDG-GILLVRSA  241 (286)
Q Consensus       200 l~~fD~V~~aalvg~~~~~k~~vl~~l~~~l~pg-g~lv~r~~  241 (286)
                      -.++|+||.+.-.     +  ..++...+.++|| |++++-..
T Consensus        96 ~~G~d~vie~~G~-----~--~~~~~a~~~~~~g~G~~v~vG~  131 (174)
T d1e3ia2          96 AGGVDYSLDCAGT-----A--QTLKAAVDCTVLGWGSCTVVGA  131 (174)
T ss_dssp             TSCBSEEEESSCC-----H--HHHHHHHHTBCTTTCEEEECCC
T ss_pred             cCCCcEEEEeccc-----c--hHHHHHHHHhhcCCeEEEecCC
Confidence            2479999977543     1  4788888999996 99988763

>d1p0fa2 c.2.1.1 (A:1164-1337) Alcohol dehydrogenase {Frog (Rana perezi) [TaxId: 8403]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Frog (Rana perezi) [TaxId: 8403]

Probab=98.16  E-value=6.4e-07  Score=73.61  Aligned_cols=103  Identities=16%  Similarity=0.066  Sum_probs=69.5

Q ss_pred             hcCCCCCCEEEEeccCCChhhHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEcc--ccchhh--cC
Q 042119          125 ENGVVQPKKVAFVGSGPMPLTSIIMAKHHLTSTHFDNFDIDEAANDVARSIVASDAEFEGRMKFLTRD--IMEVKE--QL  200 (286)
Q Consensus       125 ~~~~~~~~~VL~IG~G~lp~tai~lA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~g~l~~~i~f~~~D--~~~~~~--~l  200 (286)
                      +..++++++||.+|+|++|+.++.+|+. ....+|+++|++++.++.|++    +|. ..-+++...|  +.+...  .-
T Consensus        22 ~a~~~~G~~VlV~GaGgvGl~a~~~ak~-~G~~~Vi~~d~~~~kl~~a~~----lGa-~~~i~~~~~d~~~~~~~~~~~~   95 (174)
T d1p0fa2          22 TAKVTPGSTCAVFGLGGVGFSAIVGCKA-AGASRIIGVGTHKDKFPKAIE----LGA-TECLNPKDYDKPIYEVICEKTN   95 (174)
T ss_dssp             TTCCCTTCEEEEECCSHHHHHHHHHHHH-HTCSEEEEECSCGGGHHHHHH----TTC-SEEECGGGCSSCHHHHHHHHTT
T ss_pred             hhCCCCCCEEEEECCCchhHHHHHHHHH-cCCceeeccCChHHHHHHHHH----cCC-cEEEcCCCchhHHHHHHHHhcC
Confidence            4568999999999999999999999994 334689999999999999987    462 2222222223  111111  11


Q ss_pred             CCcceeehhhhccCChhHHHHHHHHHHhhcc-CCcEEEEee
Q 042119          201 GEYDCIFLAALVGMSKEEKLTILGHIRKYMK-DGGILLVRS  240 (286)
Q Consensus       201 ~~fD~V~~aalvg~~~~~k~~vl~~l~~~l~-pgg~lv~r~  240 (286)
                      .++|+||.+.-.      . ..++.....++ ++|++++-.
T Consensus        96 ~G~d~vid~~g~------~-~~~~~~~~~~~~~~G~~v~vG  129 (174)
T d1p0fa2          96 GGVDYAVECAGR------I-ETMMNALQSTYCGSGVTVVLG  129 (174)
T ss_dssp             SCBSEEEECSCC------H-HHHHHHHHTBCTTTCEEEECC
T ss_pred             CCCcEEEEcCCC------c-hHHHHHHHHHHHhcCceEEEE
Confidence            369999976532      1 34555555555 468888865

>d1iz0a2 c.2.1.1 (A:99-269) Quinone oxidoreductase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Quinone oxidoreductase
species: Thermus thermophilus [TaxId: 274]

Probab=98.16  E-value=1.5e-06  Score=71.03  Aligned_cols=101  Identities=13%  Similarity=0.099  Sum_probs=72.4

Q ss_pred             HHHhcCCCCCCEEEEec-cCCChhhHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEccccchhhcC
Q 042119          122 ILSENGVVQPKKVAFVG-SGPMPLTSIIMAKHHLTSTHFDNFDIDEAANDVARSIVASDAEFEGRMKFLTRDIMEVKEQL  200 (286)
Q Consensus       122 ~l~~~~~~~~~~VL~IG-~G~lp~tai~lA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~g~l~~~i~f~~~D~~~~~~~l  200 (286)
                      ++.+...+++++||..| +|++|..++.+|+.  .|++|++++.+++..+.+++    +| ..  .-+-..|..+.....
T Consensus        19 al~~~~~~~g~~VlI~ga~G~vG~~aiqlak~--~G~~vi~~~~~~~~~~~~~~----lG-a~--~~i~~~~~~~~~~~~   89 (171)
T d1iz0a2          19 ALKRAQARPGEKVLVQAAAGALGTAAVQVARA--MGLRVLAAASRPEKLALPLA----LG-AE--EAATYAEVPERAKAW   89 (171)
T ss_dssp             HHHHTTCCTTCEEEESSTTBHHHHHHHHHHHH--TTCEEEEEESSGGGSHHHHH----TT-CS--EEEEGGGHHHHHHHT
T ss_pred             HHHHhCCCCCCEEEEEeccccchhhhhhhhcc--cccccccccccccccccccc----cc-cc--eeeehhhhhhhhhcc
Confidence            44456678999999999 59999999999994  79999999999988877765    57 22  222223332222344


Q ss_pred             CCcceeehhhhccCChhHHHHHHHHHHhhccCCcEEEEee
Q 042119          201 GEYDCIFLAALVGMSKEEKLTILGHIRKYMKDGGILLVRS  240 (286)
Q Consensus       201 ~~fD~V~~aalvg~~~~~k~~vl~~l~~~l~pgg~lv~r~  240 (286)
                      .++|+||-.  +|   +    .++...+.++|||+++.-.
T Consensus        90 ~g~D~v~d~--~G---~----~~~~~~~~l~~~G~~v~~G  120 (171)
T d1iz0a2          90 GGLDLVLEV--RG---K----EVEESLGLLAHGGRLVYIG  120 (171)
T ss_dssp             TSEEEEEEC--SC---T----THHHHHTTEEEEEEEEEC-
T ss_pred             ccccccccc--cc---h----hHHHHHHHHhcCCcEEEEe
Confidence            579999853  34   1    2466788999999998754

>d1yb5a2 c.2.1.1 (A:121-294) Quinone oxidoreductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Quinone oxidoreductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.11  E-value=1.5e-06  Score=70.76  Aligned_cols=101  Identities=13%  Similarity=0.103  Sum_probs=71.2

Q ss_pred             hcCCCCCCEEEEecc-CCChhhHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEccccchhh---cC
Q 042119          125 ENGVVQPKKVAFVGS-GPMPLTSIIMAKHHLTSTHFDNFDIDEAANDVARSIVASDAEFEGRMKFLTRDIMEVKE---QL  200 (286)
Q Consensus       125 ~~~~~~~~~VL~IG~-G~lp~tai~lA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~g~l~~~i~f~~~D~~~~~~---~l  200 (286)
                      ...++++++||..|+ |+.|..++.+|+.  .|++|++++.+++..+.+++    +| ...-+++...|..+...   .-
T Consensus        23 ~~~~~~g~~VlV~Ga~G~vG~~aiq~a~~--~G~~vi~~~~~~~~~~~~~~----~G-a~~vi~~~~~~~~~~i~~~t~~   95 (174)
T d1yb5a2          23 SACVKAGESVLVHGASGGVGLAACQIARA--YGLKILGTAGTEEGQKIVLQ----NG-AHEVFNHREVNYIDKIKKYVGE   95 (174)
T ss_dssp             TSCCCTTCEEEEETCSSHHHHHHHHHHHH--TTCEEEEEESSHHHHHHHHH----TT-CSEEEETTSTTHHHHHHHHHCT
T ss_pred             HhCCCCCCEEEEEeccccccccccccccc--cCcccccccccccccccccc----cC-cccccccccccHHHHhhhhhcc
Confidence            335689999999995 9999999999994  79999999999888777765    67 22222222222222111   12


Q ss_pred             CCcceeehhhhccCChhHHHHHHHHHHhhccCCcEEEEee
Q 042119          201 GEYDCIFLAALVGMSKEEKLTILGHIRKYMKDGGILLVRS  240 (286)
Q Consensus       201 ~~fD~V~~aalvg~~~~~k~~vl~~l~~~l~pgg~lv~r~  240 (286)
                      ..||+|+.+.-      .  ..++...+.|+|||+++.-.
T Consensus        96 ~g~d~v~d~~g------~--~~~~~~~~~l~~~G~iv~~G  127 (174)
T d1yb5a2          96 KGIDIIIEMLA------N--VNLSKDLSLLSHGGRVIVVG  127 (174)
T ss_dssp             TCEEEEEESCH------H--HHHHHHHHHEEEEEEEEECC
T ss_pred             CCceEEeeccc------H--HHHHHHHhccCCCCEEEEEe
Confidence            36999986532      2  36788889999999999864

>d2dula1 c.66.1.58 (A:3-377) N(2),N(2)-dimethylguanosine tRNA methyltransferase Trm1 {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: TRM1-like
domain: N(2),N(2)-dimethylguanosine tRNA methyltransferase Trm1
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=98.09  E-value=4.7e-06  Score=76.73  Aligned_cols=104  Identities=20%  Similarity=0.116  Sum_probs=81.8

Q ss_pred             CCCEEEEeccCCChhhHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCC--------------CCeEEEEccccc
Q 042119          130 QPKKVAFVGSGPMPLTSIIMAKHHLTSTHFDNFDIDEAANDVARSIVASDAEFE--------------GRMKFLTRDIME  195 (286)
Q Consensus       130 ~~~~VL~IG~G~lp~tai~lA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~g~l~--------------~~i~f~~~D~~~  195 (286)
                      .+.+|||..||++.. ++..|+. .+..+|+..|+|++|+++++++++..| .+              ..+.+.+.|+..
T Consensus        45 ~~~~vLD~~sasG~r-siRya~E-~~~~~V~~nDis~~A~~~i~~N~~lN~-~~~~~~~~~~~~~~~~~~~~~~~~Da~~  121 (375)
T d2dula1          45 NPKIVLDALSATGIR-GIRFALE-TPAEEVWLNDISEDAYELMKRNVMLNF-DGELRESKGRAILKGEKTIVINHDDANR  121 (375)
T ss_dssp             CCSEEEESSCTTSHH-HHHHHHH-SSCSEEEEEESCHHHHHHHHHHHHHHC-CSCCEECSSEEEEESSSEEEEEESCHHH
T ss_pred             CCCEEEEcCCCccHH-HHHHHHh-CCCCEEEEecCCHHHHHHHHHHHHhcC-ccccccccccccccccceeEeehhhhhh
Confidence            678999999997554 5655553 455699999999999999999999877 33              247888888876


Q ss_pred             hhhcCC-CcceeehhhhccCChhHHHHHHHHHHhhccCCcEEEEeec
Q 042119          196 VKEQLG-EYDCIFLAALVGMSKEEKLTILGHIRKYMKDGGILLVRSA  241 (286)
Q Consensus       196 ~~~~l~-~fD~V~~aalvg~~~~~k~~vl~~l~~~l~pgg~lv~r~~  241 (286)
                      +....+ .||+|.++-+ |    ....+++...+.++.||+|.+...
T Consensus       122 ~~~~~~~~fDvIDiDPf-G----s~~pfldsAi~a~~~~Gll~vTaT  163 (375)
T d2dula1         122 LMAERHRYFHFIDLDPF-G----SPMEFLDTALRSAKRRGILGVTAT  163 (375)
T ss_dssp             HHHHSTTCEEEEEECCS-S----CCHHHHHHHHHHEEEEEEEEEEEC
T ss_pred             hhHhhcCcCCcccCCCC-C----CcHHHHHHHHHHhccCCEEEEEec
Confidence            665544 5999999865 4    334699999999999999999764

>d1h2ba2 c.2.1.1 (A:155-326) Alcohol dehydrogenase {Archaeon Aeropyrum pernix [TaxId: 56636]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Archaeon Aeropyrum pernix [TaxId: 56636]

Probab=98.08  E-value=1.5e-06  Score=70.75  Aligned_cols=97  Identities=14%  Similarity=0.137  Sum_probs=70.2

Q ss_pred             CCCCCEEEEeccCCChhhHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEcc---ccchhh--cCCC
Q 042119          128 VVQPKKVAFVGSGPMPLTSIIMAKHHLTSTHFDNFDIDEAANDVARSIVASDAEFEGRMKFLTRD---IMEVKE--QLGE  202 (286)
Q Consensus       128 ~~~~~~VL~IG~G~lp~tai~lA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~g~l~~~i~f~~~D---~~~~~~--~l~~  202 (286)
                      .+++++|+.+|+|++|+.++.+|+. ....+|+++|.+++..+.+++    +|.  +  .++..+   ..+...  .-.+
T Consensus        30 ~~~g~~vli~GaG~vG~~~~~~a~~-~g~~~vv~~~~~~~k~~~~~~----~ga--~--~~i~~~~~~~~~~~~~~~~~g  100 (172)
T d1h2ba2          30 LYPGAYVAIVGVGGLGHIAVQLLKV-MTPATVIALDVKEEKLKLAER----LGA--D--HVVDARRDPVKQVMELTRGRG  100 (172)
T ss_dssp             CCTTCEEEEECCSHHHHHHHHHHHH-HCCCEEEEEESSHHHHHHHHH----TTC--S--EEEETTSCHHHHHHHHTTTCC
T ss_pred             cCCCCEEEEeCCChHHHHHHHHHHh-hcCcccccccchhHHHHHHhh----ccc--c--eeecCcccHHHHHHHhhCCCC
Confidence            4789999999999999999999983 445689999999999888886    441  1  222222   111111  1236


Q ss_pred             cceeehhhhccCChhHHHHHHHHHHhhccCCcEEEEee
Q 042119          203 YDCIFLAALVGMSKEEKLTILGHIRKYMKDGGILLVRS  240 (286)
Q Consensus       203 fD~V~~aalvg~~~~~k~~vl~~l~~~l~pgg~lv~r~  240 (286)
                      +|+||.+...     .  ..++...+.+++||++++-.
T Consensus       101 ~d~vid~~g~-----~--~~~~~a~~~l~~~G~iv~~G  131 (172)
T d1h2ba2         101 VNVAMDFVGS-----Q--ATVDYTPYLLGRMGRLIIVG  131 (172)
T ss_dssp             EEEEEESSCC-----H--HHHHHGGGGEEEEEEEEECC
T ss_pred             ceEEEEecCc-----c--hHHHHHHHHHhCCCEEEEEe
Confidence            9999976532     1  36788899999999999865

>d1d1ta2 c.2.1.1 (A:163-338) Alcohol dehydrogenase {Human (Homo sapiens), different isozymes [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Human (Homo sapiens), different isozymes [TaxId: 9606]

Probab=98.08  E-value=5.2e-06  Score=68.13  Aligned_cols=105  Identities=12%  Similarity=0.074  Sum_probs=68.4

Q ss_pred             HhcCCCCCCEEEEeccCCChhhHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEcccc-c-hhh--c
Q 042119          124 SENGVVQPKKVAFVGSGPMPLTSIIMAKHHLTSTHFDNFDIDEAANDVARSIVASDAEFEGRMKFLTRDIM-E-VKE--Q  199 (286)
Q Consensus       124 ~~~~~~~~~~VL~IG~G~lp~tai~lA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~g~l~~~i~f~~~D~~-~-~~~--~  199 (286)
                      .+..+++++.|+.+|+|++|+.++.+++. ....+|+++|++++.++.|+++    |. ..-++....|.. + +..  .
T Consensus        23 ~~~~~~~g~tVlI~G~GgvGl~ai~~ak~-~G~~~Vi~vd~~~~kl~~Ak~~----GA-~~~in~~~~~~~~~~~~~~~~   96 (176)
T d1d1ta2          23 KTGKVKPGSTCVVFGLGGVGLSVIMGCKS-AGASRIIGIDLNKDKFEKAMAV----GA-TECISPKDSTKPISEVLSEMT   96 (176)
T ss_dssp             TTSCCCTTCEEEEECCSHHHHHHHHHHHH-TTCSEEEEECSCGGGHHHHHHH----TC-SEEECGGGCSSCHHHHHHHHH
T ss_pred             HhhCCCCCCEEEEECCCchhHHHHHHHHH-cCCceEEEecCcHHHHHHHHhc----CC-cEEECccccchHHHHHHHHhc
Confidence            34567999999999999999999999993 4347999999999999999985    41 111222222211 1 111  2


Q ss_pred             CCCcceeehhhhccCChhHHHHHHHHHHhhccCCcEEEEee
Q 042119          200 LGEYDCIFLAALVGMSKEEKLTILGHIRKYMKDGGILLVRS  240 (286)
Q Consensus       200 l~~fD~V~~aalvg~~~~~k~~vl~~l~~~l~pgg~lv~r~  240 (286)
                      -.++|+|+.+.-.      ...+...+....+++|++++-.
T Consensus        97 g~G~d~vi~~~g~------~~~~~~a~~~~~~~~G~~v~vG  131 (176)
T d1d1ta2          97 GNNVGYTFEVIGH------LETMIDALASCHMNYGTSVVVG  131 (176)
T ss_dssp             TSCCCEEEECSCC------HHHHHHHHTTSCTTTCEEEECS
T ss_pred             cccceEEEEeCCc------hHHHHHHHHHhhcCCeEEEEEE
Confidence            2479999976532      2122333444445658888876

>d2f8la1 c.66.1.45 (A:2-329) Hypothetical protein Lmo1582 {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: N-6 DNA Methylase-like
domain: Hypothetical protein Lmo1582
species: Listeria monocytogenes [TaxId: 1639]

Probab=98.07  E-value=5.1e-06  Score=74.14  Aligned_cols=112  Identities=16%  Similarity=0.192  Sum_probs=77.5

Q ss_pred             CCCCCCEEEEeccCCChhhHHHHH---hhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEccccchhhcCCCc
Q 042119          127 GVVQPKKVAFVGSGPMPLTSIIMA---KHHLTSTHFDNFDIDEAANDVARSIVASDAEFEGRMKFLTRDIMEVKEQLGEY  203 (286)
Q Consensus       127 ~~~~~~~VL~IG~G~lp~tai~lA---~~~~~g~~V~~iDid~~ai~~Ar~~~~~~g~l~~~i~f~~~D~~~~~~~l~~f  203 (286)
                      ...++.+|+|.|||.+++....+.   ++.....+++|+|+|+.+++.|+......+   ....+.++|..... ....|
T Consensus       114 ~~~~~~~vlDp~~GsG~~l~~~~~~l~~~~~~~~~~~g~di~~~~~~~a~~~~~~~~---~~~~~~~~d~~~~~-~~~~f  189 (328)
T d2f8la1         114 QKKKNVSILDPACGTANLLTTVINQLELKGDVDVHASGVDVDDLLISLALVGADLQR---QKMTLLHQDGLANL-LVDPV  189 (328)
T ss_dssp             TTCSEEEEEETTCTTSHHHHHHHHHHHTTSSCEEEEEEEESCHHHHHHHHHHHHHHT---CCCEEEESCTTSCC-CCCCE
T ss_pred             CCCCCCEEEeCCCCcchhHHHHHHHHHhccCccceEEEecccHHHHHHHHHHHHHhh---hhhhhhcccccccc-ccccc
Confidence            346778999999998766544332   112356789999999999999999988776   46788888875422 23579


Q ss_pred             ceeehhhhccC--Chh---------------HHHHHHHHHHhhccCCcEEEEeecC
Q 042119          204 DCIFLAALVGM--SKE---------------EKLTILGHIRKYMKDGGILLVRSAK  242 (286)
Q Consensus       204 D~V~~aalvg~--~~~---------------~k~~vl~~l~~~l~pgg~lv~r~~~  242 (286)
                      |+|+..--.+.  ..+               ...-++++..+.|+|||++++--+.
T Consensus       190 D~vi~NPPy~~~~~~~~~~~~~~~~~~~~~~~~~~Fi~~~~~~Lk~~G~~~~I~p~  245 (328)
T d2f8la1         190 DVVISDLPVGYYPDDENAKTFELCREEGHSFAHFLFIEQGMRYTKPGGYLFFLVPD  245 (328)
T ss_dssp             EEEEEECCCSEESCHHHHTTSTTCCSSSCEEHHHHHHHHHHHTEEEEEEEEEEEEG
T ss_pred             cccccCCCCCCCccchhhhhcchhcccCcchHHHHHHHHHHHhcCCCCceEEEecC
Confidence            99975421111  111               1223699999999999987776543

>d1jvba2 c.2.1.1 (A:144-313) Alcohol dehydrogenase {Archaeon Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Archaeon Sulfolobus solfataricus [TaxId: 2287]

Probab=98.04  E-value=1.1e-06  Score=71.13  Aligned_cols=106  Identities=14%  Similarity=0.194  Sum_probs=75.5

Q ss_pred             HHHHHhcCCCCCCEEEEecc-CCChhhHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEccccchhh
Q 042119          120 YTILSENGVVQPKKVAFVGS-GPMPLTSIIMAKHHLTSTHFDNFDIDEAANDVARSIVASDAEFEGRMKFLTRDIMEVKE  198 (286)
Q Consensus       120 ~~~l~~~~~~~~~~VL~IG~-G~lp~tai~lA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~g~l~~~i~f~~~D~~~~~~  198 (286)
                      +.++.+..++++++|+.+|+ |++|+.++.+++. ....+|+++|.+++..+.++++    |.   . .++..+-.+...
T Consensus        17 ~~al~~~~~~~g~~vlV~G~~G~vG~~~~~~~~~-~g~~~V~~~~~~~~~~~~~~~~----Ga---~-~~i~~~~~~~~~   87 (170)
T d1jvba2          17 YRAVRKASLDPTKTLLVVGAGGGLGTMAVQIAKA-VSGATIIGVDVREEAVEAAKRA----GA---D-YVINASMQDPLA   87 (170)
T ss_dssp             HHHHHHTTCCTTCEEEEETTTSHHHHHHHHHHHH-HTCCEEEEEESSHHHHHHHHHH----TC---S-EEEETTTSCHHH
T ss_pred             HHHHHHhCCCCCCEEEEEeccccceeeeeecccc-cccccccccccchhhHHHHHHc----CC---c-eeeccCCcCHHH
Confidence            44566778899999999995 9999999988884 4447999999999998888874    52   1 222222222211


Q ss_pred             ------cCCCcceeehhhhccCChhHHHHHHHHHHhhccCCcEEEEeec
Q 042119          199 ------QLGEYDCIFLAALVGMSKEEKLTILGHIRKYMKDGGILLVRSA  241 (286)
Q Consensus       199 ------~l~~fD~V~~aalvg~~~~~k~~vl~~l~~~l~pgg~lv~r~~  241 (286)
                            .-+.||+|+.++..       ...++...+.++|||++++-..
T Consensus        88 ~~~~~~~~~~~d~vid~~g~-------~~~~~~a~~~l~~~G~iv~~G~  129 (170)
T d1jvba2          88 EIRRITESKGVDAVIDLNNS-------EKTLSVYPKALAKQGKYVMVGL  129 (170)
T ss_dssp             HHHHHTTTSCEEEEEESCCC-------HHHHTTGGGGEEEEEEEEECCS
T ss_pred             HHHHHhhcccchhhhccccc-------chHHHhhhhhcccCCEEEEecc
Confidence                  11359999976532       2466778899999999988753

>d1f0ya2 c.2.1.6 (A:12-203) Short chain L-3-hydroxyacyl CoA dehydrogenase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Short chain L-3-hydroxyacyl CoA dehydrogenase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.02  E-value=1.4e-05  Score=66.59  Aligned_cols=100  Identities=16%  Similarity=0.129  Sum_probs=73.5

Q ss_pred             CEEEEeccCCChhhH-HHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhc-------CCCC-------------CCeEEEE
Q 042119          132 KKVAFVGSGPMPLTS-IIMAKHHLTSTHFDNFDIDEAANDVARSIVASD-------AEFE-------------GRMKFLT  190 (286)
Q Consensus       132 ~~VL~IG~G~lp~ta-i~lA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~-------g~l~-------------~~i~f~~  190 (286)
                      ++|..||+|.+|.+- ..+|+   .|.+|+.+|+|+++++.+++.+++.       |...             .++.+. 
T Consensus         5 kkvaViGaG~mG~~iA~~~a~---~G~~V~l~D~~~~~l~~a~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~l~~i~~~-   80 (192)
T d1f0ya2           5 KHVTVIGGGLMGAGIAQVAAA---TGHTVVLVDQTEDILAKSKKGIEESLRKVAKKKFAENPKAGDEFVEKTLSTIATS-   80 (192)
T ss_dssp             CEEEEECCSHHHHHHHHHHHH---TTCEEEEECSCHHHHHHHHHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHTEEEE-
T ss_pred             EEEEEECcCHHHHHHHHHHHh---CCCcEEEEECChHHHHHHHhhHHHHHHHHHHhhhhccchhhHHHHHHHHhhcccc-
Confidence            699999999998773 34444   8999999999999999998876532       3110             133332 


Q ss_pred             ccccchhhcCCCcceeehhhhccCChhHHHHHHHHHHhhccCCcEEEEee
Q 042119          191 RDIMEVKEQLGEYDCIFLAALVGMSKEEKLTILGHIRKYMKDGGILLVRS  240 (286)
Q Consensus       191 ~D~~~~~~~l~~fD~V~~aalvg~~~~~k~~vl~~l~~~l~pgg~lv~r~  240 (286)
                      .|   ....+.+.|+|+.+.  ..+.+.|.+++.++.+.++|+.++.-.+
T Consensus        81 ~d---~~~a~~~ad~ViEav--~E~l~~K~~v~~~l~~~~~~~~ilasnT  125 (192)
T d1f0ya2          81 TD---AASVVHSTDLVVEAI--VENLKVKNELFKRLDKFAAEHTIFASNT  125 (192)
T ss_dssp             SC---HHHHTTSCSEEEECC--CSCHHHHHHHHHHHTTTSCTTCEEEECC
T ss_pred             ch---hHhhhcccceehhhc--ccchhHHHHHHHHHhhhcccCceeeccC
Confidence            22   233456789999764  3466889999999999999998887764

>d1zq9a1 c.66.1.24 (A:36-313) Probable dimethyladenosine transferase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: rRNA adenine dimethylase-like
domain: Probable dimethyladenosine transferase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.00  E-value=1.4e-05  Score=70.58  Aligned_cols=76  Identities=14%  Similarity=0.232  Sum_probs=60.3

Q ss_pred             hcCCCCCCEEEEeccCCChhhHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEccccchhhcCCCcc
Q 042119          125 ENGVVQPKKVAFVGSGPMPLTSIIMAKHHLTSTHFDNFDIDEAANDVARSIVASDAEFEGRMKFLTRDIMEVKEQLGEYD  204 (286)
Q Consensus       125 ~~~~~~~~~VL~IG~G~lp~tai~lA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~g~l~~~i~f~~~D~~~~~~~l~~fD  204 (286)
                      .+.+.+++.|++||+|++.+|-..+ +   .+.+|++|++|+..++.-++.+.... ..++++++.+|+.+.  ++..++
T Consensus        16 ~~~~~~~d~VlEIGPG~G~LT~~Ll-~---~~~~v~aiE~D~~l~~~L~~~~~~~~-~~~~~~~i~~D~l~~--~~~~~~   88 (278)
T d1zq9a1          16 KAALRPTDVVLEVGPGTGNMTVKLL-E---KAKKVVACELDPRLVAELHKRVQGTP-VASKLQVLVGDVLKT--DLPFFD   88 (278)
T ss_dssp             HTCCCTTCEEEEECCTTSTTHHHHH-H---HSSEEEEEESCHHHHHHHHHHHTTST-TGGGEEEEESCTTTS--CCCCCS
T ss_pred             HhCCCCCCEEEEECCCchHHHHHHH-h---cCCcEEEEEEccchhHHHHHHHhhhc-cccchhhhHHHHhhh--hhhhhh
Confidence            3466789999999999988886654 5   36799999999999999999887665 457899999999654  444555


Q ss_pred             eee
Q 042119          205 CIF  207 (286)
Q Consensus       205 ~V~  207 (286)
                      .|+
T Consensus        89 ~vV   91 (278)
T d1zq9a1          89 TCV   91 (278)
T ss_dssp             EEE
T ss_pred             hhh
Confidence            554

>d1yuba_ c.66.1.24 (A:) rRNA adenine dimethylase {Streptococcus pneumoniae, Ermam [TaxId: 1313]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: rRNA adenine dimethylase-like
domain: rRNA adenine dimethylase
species: Streptococcus pneumoniae, Ermam [TaxId: 1313]

Probab=97.95  E-value=3e-07  Score=80.27  Aligned_cols=78  Identities=15%  Similarity=0.264  Sum_probs=57.8

Q ss_pred             hcCCCCCCEEEEeccCCChhhHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEccccchhhcCCCcc
Q 042119          125 ENGVVQPKKVAFVGSGPMPLTSIIMAKHHLTSTHFDNFDIDEAANDVARSIVASDAEFEGRMKFLTRDIMEVKEQLGEYD  204 (286)
Q Consensus       125 ~~~~~~~~~VL~IG~G~lp~tai~lA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~g~l~~~i~f~~~D~~~~~~~l~~fD  204 (286)
                      ...+.++++||+||||++.+|.. |++   .+.+|++||+|+.+++.+++..   + ...+++++++|+.++..+...++
T Consensus        24 ~~~~~~~d~VLEIGpG~G~LT~~-L~~---~~~~v~aIE~D~~l~~~l~~~~---~-~~~n~~ii~~D~l~~~~~~~~~~   95 (245)
T d1yuba_          24 QLNLKETDTVYEIGTGKGHLTTK-LAK---ISKQVTSIELDSHLFNLSSEKL---K-LNTRVTLIHQDILQFQFPNKQRY   95 (245)
T ss_dssp             HCCCCSSEEEEECSCCCSSCSHH-HHH---HSSEEEESSSSCSSSSSSSCTT---T-TCSEEEECCSCCTTTTCCCSSEE
T ss_pred             hcCCCCCCeEEEECCCccHHHHH-HHh---hcCceeEeeecccchhhhhhhh---h-hccchhhhhhhhhccccccceee
Confidence            45678899999999999888865 566   4689999999999988887653   3 23589999999987654433333


Q ss_pred             eeehhhh
Q 042119          205 CIFLAAL  211 (286)
Q Consensus       205 ~V~~aal  211 (286)
                      . +++.+
T Consensus        96 ~-vv~NL  101 (245)
T d1yuba_          96 K-IVGNI  101 (245)
T ss_dssp             E-EEEEC
T ss_pred             e-Eeeee
Confidence            3 33443

>d2f1ka2 c.2.1.6 (A:1-165) Prephenate dehydrogenase TyrA {Synechocystis sp. pcc 6803 [TaxId: 1148]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Prephenate dehydrogenase TyrA
species: Synechocystis sp. pcc 6803 [TaxId: 1148]

Probab=97.88  E-value=2.2e-05  Score=62.98  Aligned_cols=89  Identities=15%  Similarity=0.112  Sum_probs=63.7

Q ss_pred             CEEEEeccCCChhhHH-HHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEccccchhhcCCCcceeehhh
Q 042119          132 KKVAFVGSGPMPLTSI-IMAKHHLTSTHFDNFDIDEAANDVARSIVASDAEFEGRMKFLTRDIMEVKEQLGEYDCIFLAA  210 (286)
Q Consensus       132 ~~VL~IG~G~lp~tai-~lA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~g~l~~~i~f~~~D~~~~~~~l~~fD~V~~aa  210 (286)
                      +||.+||+|.+|.+-. .|.+   .|.+|+++|++++.++.|++    .| .-+   -...+    .......|+||++.
T Consensus         1 MkI~iIG~G~mG~~lA~~l~~---~g~~V~~~d~~~~~~~~a~~----~~-~~~---~~~~~----~~~~~~~DiIilav   65 (165)
T d2f1ka2           1 MKIGVVGLGLIGASLAGDLRR---RGHYLIGVSRQQSTCEKAVE----RQ-LVD---EAGQD----LSLLQTAKIIFLCT   65 (165)
T ss_dssp             CEEEEECCSHHHHHHHHHHHH---TTCEEEEECSCHHHHHHHHH----TT-SCS---EEESC----GGGGTTCSEEEECS
T ss_pred             CEEEEEeecHHHHHHHHHHHH---CCCEEEEEECCchHHHHHHH----hh-ccc---eeeee----cccccccccccccC
Confidence            5899999999886532 3333   78999999999998887765    45 211   11122    23446799999864


Q ss_pred             hccCChhHHHHHHHHHHhhccCCcEEEEe
Q 042119          211 LVGMSKEEKLTILGHIRKYMKDGGILLVR  239 (286)
Q Consensus       211 lvg~~~~~k~~vl~~l~~~l~pgg~lv~r  239 (286)
                          +.....++++++...++++.+++-.
T Consensus        66 ----p~~~~~~vl~~l~~~l~~~~iv~~~   90 (165)
T d2f1ka2          66 ----PIQLILPTLEKLIPHLSPTAIVTDV   90 (165)
T ss_dssp             ----CHHHHHHHHHHHGGGSCTTCEEEEC
T ss_pred             ----cHhhhhhhhhhhhhhcccccceeec
Confidence                2367788999999999999988654

>d2g5ca2 c.2.1.6 (A:30-200) Prephenate dehydrogenase TyrA {Aquifex aeolicus [TaxId: 63363]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Prephenate dehydrogenase TyrA
species: Aquifex aeolicus [TaxId: 63363]

Probab=97.85  E-value=3.9e-05  Score=61.58  Aligned_cols=94  Identities=15%  Similarity=0.090  Sum_probs=64.5

Q ss_pred             CEEEEeccCCChhhHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEccccchhhcCCCcceeehhhh
Q 042119          132 KKVAFVGSGPMPLTSIIMAKHHLTSTHFDNFDIDEAANDVARSIVASDAEFEGRMKFLTRDIMEVKEQLGEYDCIFLAAL  211 (286)
Q Consensus       132 ~~VL~IG~G~lp~tai~lA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~g~l~~~i~f~~~D~~~~~~~l~~fD~V~~aal  211 (286)
                      ++|++||+|-+|.+-..-.++..+..+|+++|.+++..+.|++.    |.    +.....+...  ......|+|+++.-
T Consensus         2 k~I~IIG~G~mG~sla~~L~~~g~~~~I~~~D~~~~~~~~a~~~----~~----~~~~~~~~~~--~~~~~~dlIila~p   71 (171)
T d2g5ca2           2 QNVLIVGVGFMGGSFAKSLRRSGFKGKIYGYDINPESISKAVDL----GI----IDEGTTSIAK--VEDFSPDFVMLSSP   71 (171)
T ss_dssp             CEEEEESCSHHHHHHHHHHHHTTCCSEEEEECSCHHHHHHHHHT----TS----CSEEESCGGG--GGGTCCSEEEECSC
T ss_pred             CEEEEEccCHHHHHHHHHHHhcCCCeEEEEEECChHHHHHHHHh----hc----chhhhhhhhh--hhccccccccccCC
Confidence            37999999998876553333234557999999999999988874    41    2122222211  12236899998754


Q ss_pred             ccCChhHHHHHHHHHHhhccCCcEEEEe
Q 042119          212 VGMSKEEKLTILGHIRKYMKDGGILLVR  239 (286)
Q Consensus       212 vg~~~~~k~~vl~~l~~~l~pgg~lv~r  239 (286)
                      +    ..-.++++.+.+.++++.+++-.
T Consensus        72 ~----~~~~~vl~~l~~~~~~~~ii~d~   95 (171)
T d2g5ca2          72 V----RTFREIAKKLSYILSEDATVTDQ   95 (171)
T ss_dssp             H----HHHHHHHHHHHHHSCTTCEEEEC
T ss_pred             c----hhhhhhhhhhhcccccccccccc
Confidence            3    56678999999999998877654

>d1qyra_ c.66.1.24 (A:) High level kasugamycin resistance protein KsgA {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: rRNA adenine dimethylase-like
domain: High level kasugamycin resistance protein KsgA
species: Escherichia coli [TaxId: 562]

Probab=97.68  E-value=1.9e-05  Score=68.70  Aligned_cols=64  Identities=11%  Similarity=0.173  Sum_probs=51.5

Q ss_pred             cCCCCCCEEEEeccCCChhhHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEccccchh
Q 042119          126 NGVVQPKKVAFVGSGPMPLTSIIMAKHHLTSTHFDNFDIDEAANDVARSIVASDAEFEGRMKFLTRDIMEVK  197 (286)
Q Consensus       126 ~~~~~~~~VL~IG~G~lp~tai~lA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~g~l~~~i~f~~~D~~~~~  197 (286)
                      ..+.+++.|++||+|++.+|.. |++   .+.+|++||+|+..++..++..   . ..++++++.+|+.++.
T Consensus        17 ~~~~~~d~vlEIGpG~G~LT~~-Ll~---~~~~v~aiEiD~~l~~~L~~~~---~-~~~~~~ii~~D~l~~~   80 (252)
T d1qyra_          17 INPQKGQAMVEIGPGLAALTEP-VGE---RLDQLTVIELDRDLAARLQTHP---F-LGPKLTIYQQDAMTFN   80 (252)
T ss_dssp             HCCCTTCCEEEECCTTTTTHHH-HHT---TCSCEEEECCCHHHHHHHHTCT---T-TGGGEEEECSCGGGCC
T ss_pred             cCCCCCCEEEEECCCchHHHHH-HHc---cCCceEEEEeccchhHHHHHHh---h-hccchhHHhhhhhhhc
Confidence            3567899999999999888866 555   5689999999999998887742   2 2368999999997643

>d2oyra1 c.66.1.55 (A:1-250) Hypothetical protein YhiQ {Shigella flexneri [TaxId: 623]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: YhiQ-like
domain: Hypothetical protein YhiQ
species: Shigella flexneri [TaxId: 623]

Probab=97.63  E-value=3.3e-05  Score=67.17  Aligned_cols=77  Identities=8%  Similarity=0.201  Sum_probs=61.8

Q ss_pred             CEEEEeccCCChhhHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCC-------CCCCeEEEEccccchhhcCC-Cc
Q 042119          132 KKVAFVGSGPMPLTSIIMAKHHLTSTHFDNFDIDEAANDVARSIVASDAE-------FEGRMKFLTRDIMEVKEQLG-EY  203 (286)
Q Consensus       132 ~~VL~IG~G~lp~tai~lA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~g~-------l~~~i~f~~~D~~~~~~~l~-~f  203 (286)
                      .+|+|.=+| +|..++.+|.   .|++||++|.+|....+.++.+++...       ...||+++++|+.+...... .|
T Consensus        90 ~~VlD~TaG-lG~Da~vlA~---~G~~V~~iEr~p~l~~ll~d~l~r~~~~~~~~~~~~~ri~li~~Ds~~~L~~~~~~~  165 (250)
T d2oyra1          90 PDVVDATAG-LGRDAFVLAS---VGCRVRMLERNPVVAALLDDGLARGYADAEIGGWLQERLQLIHASSLTALTDITPRP  165 (250)
T ss_dssp             CCEEETTCT-TCHHHHHHHH---HTCCEEEEECCHHHHHHHHHHHHHHHHCTTTHHHHHHHEEEEESCHHHHSTTCSSCC
T ss_pred             CEEEECCCc-ccHHHHHHHh---CCCEEEEEccCHHHHHHHHHHHHHHHhCchhHHHHhhhheeecCcHHHHHhccCCCC
Confidence            489999999 7999999998   689999999999988877776654320       12389999999988776554 69


Q ss_pred             ceeehhhhc
Q 042119          204 DCIFLAALV  212 (286)
Q Consensus       204 D~V~~aalv  212 (286)
                      |+||++-+.
T Consensus       166 DvIYlDPMF  174 (250)
T d2oyra1         166 QVVYLDPMF  174 (250)
T ss_dssp             SEEEECCCC
T ss_pred             CEEEECCCC
Confidence            999988543

>d2fzwa2 c.2.1.1 (A:163-338) Alcohol dehydrogenase {Human (Homo sapiens), different isozymes [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Human (Homo sapiens), different isozymes [TaxId: 9606]

Probab=97.62  E-value=1.9e-05  Score=63.65  Aligned_cols=103  Identities=17%  Similarity=0.114  Sum_probs=69.8

Q ss_pred             hcCCCCCCEEEEeccCCChhhHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEE--ccccchhh--cC
Q 042119          125 ENGVVQPKKVAFVGSGPMPLTSIIMAKHHLTSTHFDNFDIDEAANDVARSIVASDAEFEGRMKFLT--RDIMEVKE--QL  200 (286)
Q Consensus       125 ~~~~~~~~~VL~IG~G~lp~tai~lA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~g~l~~~i~f~~--~D~~~~~~--~l  200 (286)
                      +..++++++||.+|+|++|+.++.+|+. .....|+++|.+++..+++++    +|. ..-+++..  .++.+...  .-
T Consensus        23 ~~~~~~G~tVlI~GaGGvG~~aiq~ak~-~G~~~vi~~~~~~~k~~~ak~----lGa-~~~i~~~~~~~~~~~~~~~~~~   96 (176)
T d2fzwa2          23 TAKLEPGSVCAVFGLGGVGLAVIMGCKV-AGASRIIGVDINKDKFARAKE----FGA-TECINPQDFSKPIQEVLIEMTD   96 (176)
T ss_dssp             TTCCCTTCEEEEECCSHHHHHHHHHHHH-HTCSEEEEECSCGGGHHHHHH----HTC-SEEECGGGCSSCHHHHHHHHTT
T ss_pred             hhCCCCCCEEEEecchhHHHHHHHHHHH-HhcCceEEEcccHHHHHHHHH----hCC-cEEEeCCchhhHHHHHHHHHcC
Confidence            4568999999999999999999999994 444689999999999988887    452 11111111  11111111  12


Q ss_pred             CCcceeehhhhccCChhHHHHHHHHHHhhccCCcEEEEee
Q 042119          201 GEYDCIFLAALVGMSKEEKLTILGHIRKYMKDGGILLVRS  240 (286)
Q Consensus       201 ~~fD~V~~aalvg~~~~~k~~vl~~l~~~l~pgg~lv~r~  240 (286)
                      .++|+||.+.  |   .+  ..++.....+++||.+++-.
T Consensus        97 ~g~D~vid~~--G---~~--~~~~~~~~~~~~g~~~~~v~  129 (176)
T d2fzwa2          97 GGVDYSFECI--G---NV--KVMRAALEACHKGWGVSVVV  129 (176)
T ss_dssp             SCBSEEEECS--C---CH--HHHHHHHHTBCTTTCEEEEC
T ss_pred             CCCcEeeecC--C---CH--HHHHHHHHhhcCCceeEEEE
Confidence            4699999653  2   12  46778888999987776543

>d1bg6a2 c.2.1.6 (A:4-187) N-(1-D-carboxylethyl)-L-norvaline dehydrogenase {Arthrobacter, strain 1c [TaxId: 1663]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: N-(1-D-carboxylethyl)-L-norvaline dehydrogenase
species: Arthrobacter, strain 1c [TaxId: 1663]

Probab=97.60  E-value=6.6e-05  Score=60.29  Aligned_cols=99  Identities=18%  Similarity=0.198  Sum_probs=66.8

Q ss_pred             CEEEEeccCCChhhHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHh--cCCCCCCe----EEEEccccchhhcCCCcce
Q 042119          132 KKVAFVGSGPMPLTSIIMAKHHLTSTHFDNFDIDEAANDVARSIVAS--DAEFEGRM----KFLTRDIMEVKEQLGEYDC  205 (286)
Q Consensus       132 ~~VL~IG~G~lp~tai~lA~~~~~g~~V~~iDid~~ai~~Ar~~~~~--~g~l~~~i----~f~~~D~~~~~~~l~~fD~  205 (286)
                      ++|..||+|++|.........  .|.+|+.+|++++.++..++.-..  .. -....    .....|.   ...+.++|+
T Consensus         2 k~iaIiGaG~~G~~~A~~l~~--~G~~V~~~~r~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~---~e~~~~aD~   75 (184)
T d1bg6a2           2 KTYAVLGLGNGGHAFAAYLAL--KGQSVLAWDIDAQRIKEIQDRGAIIAEG-PGLAGTAHPDLLTSDI---GLAVKDADV   75 (184)
T ss_dssp             CEEEEECCSHHHHHHHHHHHH--TTCEEEEECSCHHHHHHHHHHTSEEEES-SSCCEEECCSEEESCH---HHHHTTCSE
T ss_pred             CEEEEECccHHHHHHHHHHHH--CCCEEEEEECCHHHHHHHHHcCCCchhh-hhhhhhhhhhhhhhhh---HhHhcCCCE
Confidence            689999999988765544442  789999999999988877654211  01 00111    1122232   333467999


Q ss_pred             eehhhhccCChhHHHHHHHHHHhhccCCcEEEEee
Q 042119          206 IFLAALVGMSKEEKLTILGHIRKYMKDGGILLVRS  240 (286)
Q Consensus       206 V~~aalvg~~~~~k~~vl~~l~~~l~pgg~lv~r~  240 (286)
                      |+++.-    ......+++++.++++++..+++..
T Consensus        76 iii~v~----~~~~~~~~~~i~~~l~~~~~iv~~~  106 (184)
T d1bg6a2          76 ILIVVP----AIHHASIAANIASYISEGQLIILNP  106 (184)
T ss_dssp             EEECSC----GGGHHHHHHHHGGGCCTTCEEEESS
T ss_pred             EEEEEc----hhHHHHHHHHhhhccCCCCEEEEeC
Confidence            997632    3566789999999999999887654

>d1qora2 c.2.1.1 (A:113-291) Quinone oxidoreductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Quinone oxidoreductase
species: Escherichia coli [TaxId: 562]

Probab=97.58  E-value=2.5e-05  Score=63.25  Aligned_cols=99  Identities=8%  Similarity=0.053  Sum_probs=68.6

Q ss_pred             CCCCCCEEEEeccCC-ChhhHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEccccchhhc---CCC
Q 042119          127 GVVQPKKVAFVGSGP-MPLTSIIMAKHHLTSTHFDNFDIDEAANDVARSIVASDAEFEGRMKFLTRDIMEVKEQ---LGE  202 (286)
Q Consensus       127 ~~~~~~~VL~IG~G~-lp~tai~lA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~g~l~~~i~f~~~D~~~~~~~---l~~  202 (286)
                      .++++++||..|+|+ +|..++.+|+.  .|++|+++|.+++..+.+++    +|. ..-+.+...|..+...+   -..
T Consensus        25 ~l~~g~~Vlv~ga~g~vG~~~iqlak~--~Ga~Vi~~~~s~~k~~~~~~----lGa-~~vi~~~~~d~~~~v~~~t~g~g   97 (179)
T d1qora2          25 EIKPDEQFLFHAAAGGVGLIACQWAKA--LGAKLIGTVGTAQKAQSALK----AGA-WQVINYREEDLVERLKEITGGKK   97 (179)
T ss_dssp             CCCTTCEEEESSTTBHHHHHHHHHHHH--HTCEEEEEESSHHHHHHHHH----HTC-SEEEETTTSCHHHHHHHHTTTCC
T ss_pred             CCCCCCEEEEEccccccchHHHHHHHH--hCCeEeecccchHHHHHHHh----cCC-eEEEECCCCCHHHHHHHHhCCCC
Confidence            468899999995554 89999999994  89999999999999888876    462 22222222332221111   136


Q ss_pred             cceeehhhhccCChhHHHHHHHHHHhhccCCcEEEEee
Q 042119          203 YDCIFLAALVGMSKEEKLTILGHIRKYMKDGGILLVRS  240 (286)
Q Consensus       203 fD~V~~aalvg~~~~~k~~vl~~l~~~l~pgg~lv~r~  240 (286)
                      +|+|+.+..     .   +.++...+.++|+|++++-.
T Consensus        98 ~d~v~d~~g-----~---~~~~~~~~~l~~~G~~v~~g  127 (179)
T d1qora2          98 VRVVYDSVG-----R---DTWERSLDCLQRRGLMVSFG  127 (179)
T ss_dssp             EEEEEECSC-----G---GGHHHHHHTEEEEEEEEECC
T ss_pred             eEEEEeCcc-----H---HHHHHHHHHHhcCCeeeecc
Confidence            899886532     1   25667889999999987754

>d1pqwa_ c.2.1.1 (A:) Putative enoyl reductase domain of polyketide synthase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Putative enoyl reductase domain of polyketide synthase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=97.56  E-value=2.5e-05  Score=63.33  Aligned_cols=99  Identities=10%  Similarity=0.054  Sum_probs=68.6

Q ss_pred             CCCCCCEEEEec-cCCChhhHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEccccchhhc---CCC
Q 042119          127 GVVQPKKVAFVG-SGPMPLTSIIMAKHHLTSTHFDNFDIDEAANDVARSIVASDAEFEGRMKFLTRDIMEVKEQ---LGE  202 (286)
Q Consensus       127 ~~~~~~~VL~IG-~G~lp~tai~lA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~g~l~~~i~f~~~D~~~~~~~---l~~  202 (286)
                      .++++++||..| ||++|..++.+|+.  .|++|++++.+++..+.+++    .|. ..-+.....|..+...+   -.+
T Consensus        22 ~~~~g~~VlI~ga~g~vG~~~iqla~~--~g~~vi~~~~~~~~~~~l~~----~Ga-~~vi~~~~~~~~~~v~~~t~~~g   94 (183)
T d1pqwa_          22 RLSPGERVLIHSATGGVGMAAVSIAKM--IGARIYTTAGSDAKREMLSR----LGV-EYVGDSRSVDFADEILELTDGYG   94 (183)
T ss_dssp             CCCTTCEEEETTTTSHHHHHHHHHHHH--HTCEEEEEESSHHHHHHHHT----TCC-SEEEETTCSTHHHHHHHHTTTCC
T ss_pred             CCCCCCEEEEECCCCCcccccchhhcc--ccccceeeeccccccccccc----ccc-cccccCCccCHHHHHHHHhCCCC
Confidence            468899999988 59999999999994  78999999999887766654    672 21122222222221111   136


Q ss_pred             cceeehhhhccCChhHHHHHHHHHHhhccCCcEEEEee
Q 042119          203 YDCIFLAALVGMSKEEKLTILGHIRKYMKDGGILLVRS  240 (286)
Q Consensus       203 fD~V~~aalvg~~~~~k~~vl~~l~~~l~pgg~lv~r~  240 (286)
                      ||+||...  |    .  +.++...+.|+|+|+++.-.
T Consensus        95 ~d~v~d~~--g----~--~~~~~~~~~l~~~G~~v~~G  124 (183)
T d1pqwa_          95 VDVVLNSL--A----G--EAIQRGVQILAPGGRFIELG  124 (183)
T ss_dssp             EEEEEECC--C----T--HHHHHHHHTEEEEEEEEECS
T ss_pred             EEEEEecc--c----c--hHHHHHHHHhcCCCEEEEEc
Confidence            99999543  2    2  36777889999999999853

>d1cdoa2 c.2.1.1 (A:165-339) Alcohol dehydrogenase {Cod (Gadus callarias) [TaxId: 8053]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Cod (Gadus callarias) [TaxId: 8053]

Probab=97.55  E-value=5.5e-05  Score=60.97  Aligned_cols=104  Identities=12%  Similarity=0.077  Sum_probs=66.8

Q ss_pred             hcCCCCCCEEEEeccCCChhhHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEcc-c-cchhh--cC
Q 042119          125 ENGVVQPKKVAFVGSGPMPLTSIIMAKHHLTSTHFDNFDIDEAANDVARSIVASDAEFEGRMKFLTRD-I-MEVKE--QL  200 (286)
Q Consensus       125 ~~~~~~~~~VL~IG~G~lp~tai~lA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~g~l~~~i~f~~~D-~-~~~~~--~l  200 (286)
                      ...++++++|+.+|+|++|++++.+++ ...+..|+++|.+++.++.|++    +|. ..-|++...| . .+...  .-
T Consensus        23 ~a~~k~g~~VlI~G~Gg~g~~~~~~~~-~~g~~~Vi~~~~~~~rl~~a~~----~GA-d~~in~~~~~~~~~~~~~~~~~   96 (175)
T d1cdoa2          23 TAKVEPGSTCAVFGLGAVGLAAVMGCH-SAGAKRIIAVDLNPDKFEKAKV----FGA-TDFVNPNDHSEPISQVLSKMTN   96 (175)
T ss_dssp             TTCCCTTCEEEEECCSHHHHHHHHHHH-HTTCSEEEEECSCGGGHHHHHH----TTC-CEEECGGGCSSCHHHHHHHHHT
T ss_pred             hhCCCCCCEEEEEecCCccchHHHHHH-HHhhchheeecchHHHHHHHHH----cCC-cEEEcCCCcchhHHHHHHhhcc
Confidence            456899999999999999999999988 4667789999999999988887    562 1111111111 0 11111  12


Q ss_pred             CCcceeehhhhccCChhHHHHHHHHHHhhccCC-cEEEEeec
Q 042119          201 GEYDCIFLAALVGMSKEEKLTILGHIRKYMKDG-GILLVRSA  241 (286)
Q Consensus       201 ~~fD~V~~aalvg~~~~~k~~vl~~l~~~l~pg-g~lv~r~~  241 (286)
                      .++|+|+.+...     .  ..+......+++| +++++-..
T Consensus        97 ~G~d~vid~~G~-----~--~~~~~a~~~~~~g~~~~~~~g~  131 (175)
T d1cdoa2          97 GGVDFSLECVGN-----V--GVMRNALESCLKGWGVSVLVGW  131 (175)
T ss_dssp             SCBSEEEECSCC-----H--HHHHHHHHTBCTTTCEEEECSC
T ss_pred             CCcceeeeecCC-----H--HHHHHHHHHhhCCCcceeEEEe
Confidence            469999976532     1  2445555555565 55554443

>d1wdka3 c.2.1.6 (A:311-496) Fatty oxidation complex alpha subunit, middle domain {Pseudomonas fragi [TaxId: 296]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Fatty oxidation complex alpha subunit, middle domain
species: Pseudomonas fragi [TaxId: 296]

Probab=97.48  E-value=5e-05  Score=62.71  Aligned_cols=99  Identities=19%  Similarity=0.184  Sum_probs=70.2

Q ss_pred             CEEEEeccCCChhhHH-HHHhhcCCCcEEEEEeCChHHHHHHHHHHHhc-------CCCC--------CCeEEEEccccc
Q 042119          132 KKVAFVGSGPMPLTSI-IMAKHHLTSTHFDNFDIDEAANDVARSIVASD-------AEFE--------GRMKFLTRDIME  195 (286)
Q Consensus       132 ~~VL~IG~G~lp~tai-~lA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~-------g~l~--------~~i~f~~~D~~~  195 (286)
                      ++|..||+|.+|.+-. .+|.   .|.+|+.+|+|+++++.+.+.+...       |.+.        .++.+ +.+   
T Consensus         5 ~~vaViGaG~mG~~iA~~~a~---~G~~V~l~D~~~~~l~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~i~~-~~~---   77 (186)
T d1wdka3           5 KQAAVLGAGIMGGGIAYQSAS---KGTPILMKDINEHGIEQGLAEAAKLLVGRVDKGRMTPAKMAEVLNGIRP-TLS---   77 (186)
T ss_dssp             SSEEEECCHHHHHHHHHHHHH---TTCCEEEECSSHHHHHHHHHHHHHHHHHHHTTTSSCHHHHHHHHHHEEE-ESS---
T ss_pred             CEEEEECcCHHHHHHHHHHHh---CCCeEEEEECCHHHHhhhhhhhhhhHHhhhcccccchhhhhhhhceeec-ccc---
Confidence            6899999999987643 3444   7999999999999999887765422       1000        11222 111   


Q ss_pred             hhhcCCCcceeehhhhccCChhHHHHHHHHHHhhccCCcEEEEee
Q 042119          196 VKEQLGEYDCIFLAALVGMSKEEKLTILGHIRKYMKDGGILLVRS  240 (286)
Q Consensus       196 ~~~~l~~fD~V~~aalvg~~~~~k~~vl~~l~~~l~pgg~lv~r~  240 (286)
                       ..++.+.|+|+.+.  ..+.+.|.+++.++.+.++|+.+|.-.+
T Consensus        78 -~~~~~~adlViEav--~E~l~~K~~lf~~l~~~~~~~~IiaSnT  119 (186)
T d1wdka3          78 -YGDFGNVDLVVEAV--VENPKVKQAVLAEVENHVREDAILASNT  119 (186)
T ss_dssp             -STTGGGCSEEEECC--CSCHHHHHHHHHHHHTTSCTTCEEEECC
T ss_pred             -cccccccceeeeee--cchHHHHHHHHHHHHhhcCCCeeEEecc
Confidence             12345789999753  4567899999999999999998887764

>d2jhfa2 c.2.1.1 (A:164-339) Alcohol dehydrogenase {Horse (Equus caballus) [TaxId: 9796]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Horse (Equus caballus) [TaxId: 9796]

Probab=97.46  E-value=0.00024  Score=57.23  Aligned_cols=101  Identities=17%  Similarity=0.147  Sum_probs=68.3

Q ss_pred             hcCCCCCCEEEEeccCCChhhHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEccccc----hhh--
Q 042119          125 ENGVVQPKKVAFVGSGPMPLTSIIMAKHHLTSTHFDNFDIDEAANDVARSIVASDAEFEGRMKFLTRDIME----VKE--  198 (286)
Q Consensus       125 ~~~~~~~~~VL~IG~G~lp~tai~lA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~g~l~~~i~f~~~D~~~----~~~--  198 (286)
                      +..++++++|+.+|+|++|.+++.+++ ...+.+|+++|++++..++++++    |. .  -.+...+..+    ...  
T Consensus        23 ~~~vk~GdtVlV~GaGG~G~~~~~~~~-~~g~~~Vi~~~~~~~k~~~a~~~----Ga-~--~~i~~~~~~~~~~~~~~~~   94 (176)
T d2jhfa2          23 VAKVTQGSTCAVFGLGGVGLSVIMGCK-AAGAARIIGVDINKDKFAKAKEV----GA-T--ECVNPQDYKKPIQEVLTEM   94 (176)
T ss_dssp             TTCCCTTCEEEEECCSHHHHHHHHHHH-HTTCSEEEEECSCGGGHHHHHHT----TC-S--EEECGGGCSSCHHHHHHHH
T ss_pred             hhCCCCCCEEEEECCCCcHHHHHHHHH-HcCCceEEeecCcHHHHHHHHHh----CC-e--eEEecCCchhHHHHHHHHH
Confidence            456899999999999999999999998 45568999999999999988874    41 1  1121112111    111  


Q ss_pred             cCCCcceeehhhhccCChhHHHHHHHHHHhhccCC-cEEEEee
Q 042119          199 QLGEYDCIFLAALVGMSKEEKLTILGHIRKYMKDG-GILLVRS  240 (286)
Q Consensus       199 ~l~~fD~V~~aalvg~~~~~k~~vl~~l~~~l~pg-g~lv~r~  240 (286)
                      ...++|+||.+.-.    +   ..++.....+++| |.+++-.
T Consensus        95 ~~~G~D~vid~~G~----~---~~~~~a~~~~~~~~g~~~~~~  130 (176)
T d2jhfa2          95 SNGGVDFSFEVIGR----L---DTMVTALSCCQEAYGVSVIVG  130 (176)
T ss_dssp             TTSCBSEEEECSCC----H---HHHHHHHHHBCTTTCEEEECS
T ss_pred             hcCCCCEEEecCCc----h---hHHHHHHHHHhcCCcceEEec
Confidence            22479999976532    1   3455566677776 5666654

>d2ih2a1 c.66.1.27 (A:21-243) DNA methylase TaqI, N-terminal domain {Thermus aquaticus [TaxId: 271]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: DNA methylase TaqI, N-terminal domain
domain: DNA methylase TaqI, N-terminal domain
species: Thermus aquaticus [TaxId: 271]

Probab=97.45  E-value=0.00041  Score=57.04  Aligned_cols=102  Identities=19%  Similarity=0.172  Sum_probs=68.4

Q ss_pred             CCCCCCEEEEeccCCChhhHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEccccchhhcCCCccee
Q 042119          127 GVVQPKKVAFVGSGPMPLTSIIMAKHHLTSTHFDNFDIDEAANDVARSIVASDAEFEGRMKFLTRDIMEVKEQLGEYDCI  206 (286)
Q Consensus       127 ~~~~~~~VL~IG~G~lp~tai~lA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~g~l~~~i~f~~~D~~~~~~~l~~fD~V  206 (286)
                      ...++.+|+|.|||++++......+ +.....++|+|+|+.+++           +..+..++++|...... ...||+|
T Consensus        16 ~~~~~~~IlDp~~G~G~fl~~~~~~-~~~~~~i~g~ei~~~~~~-----------~~~~~~~~~~~~~~~~~-~~~fd~i   82 (223)
T d2ih2a1          16 EAPRGGRVLEPACAHGPFLRAFREA-HGTAYRFVGVEIDPKALD-----------LPPWAEGILADFLLWEP-GEAFDLI   82 (223)
T ss_dssp             CCCTTCEEEEETCTTCHHHHHHHHH-HCSCSEEEEEESCTTTCC-----------CCTTEEEEESCGGGCCC-SSCEEEE
T ss_pred             CCCCcCEEEECCCchHHHHHHHHHh-ccccceEEeeecCHHHHh-----------hcccceeeeeehhcccc-cccccee
Confidence            4578899999999988776544433 456788999999987643           23456788888755332 2478887


Q ss_pred             ehhhhccC-----------Ch-----------------hHHHHHHHHHHhhccCCcEEEEeec
Q 042119          207 FLAALVGM-----------SK-----------------EEKLTILGHIRKYMKDGGILLVRSA  241 (286)
Q Consensus       207 ~~aalvg~-----------~~-----------------~~k~~vl~~l~~~l~pgg~lv~r~~  241 (286)
                      +..---+.           ..                 .-...++++..+.|+|||.+++-.+
T Consensus        83 i~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Fi~~al~~lk~~G~~~~I~p  145 (223)
T d2ih2a1          83 LGNPPYGIVGEASKYPIHVFKAVKDLYKKAFSTWKGKYNLYGAFLEKAVRLLKPGGVLVFVVP  145 (223)
T ss_dssp             EECCCCCCBSCTTTCSBCCCHHHHHHHHHHCTTCCTTCCHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred             cccCccccccccccccchhhhhhhhhhhhccccCCCcchHHHHHHHHHHHhcccCCceEEEEe
Confidence            64321000           00                 0134567899999999999877643

>d1ej0a_ c.66.1.2 (A:) RNA methyltransferase FtsJ {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: RNA methyltransferase FtsJ
domain: RNA methyltransferase FtsJ
species: Escherichia coli [TaxId: 562]

Probab=97.44  E-value=0.0005  Score=56.42  Aligned_cols=134  Identities=13%  Similarity=0.172  Sum_probs=87.8

Q ss_pred             CCCCCEEEEeccCCChhhHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEccccchhh--------c
Q 042119          128 VVQPKKVAFVGSGPMPLTSIIMAKHHLTSTHFDNFDIDEAANDVARSIVASDAEFEGRMKFLTRDIMEVKE--------Q  199 (286)
Q Consensus       128 ~~~~~~VL~IG~G~lp~tai~lA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~g~l~~~i~f~~~D~~~~~~--------~  199 (286)
                      .+++.+|+|+||+|+|.+-...-+ ..+...|+++|+.|-           ...  +.+.|+++|..+...        .
T Consensus        20 ~k~~~~vlDLg~aPGgw~q~~~~~-~~~~~~v~~vDl~~~-----------~~i--~~~~~~~~d~~~~~~~~~~~~~~~   85 (180)
T d1ej0a_          20 FKPGMTVVDLGAAPGGWSQYVVTQ-IGGKGRIIACDLLPM-----------DPI--VGVDFLQGDFRDELVMKALLERVG   85 (180)
T ss_dssp             CCTTCEEEEESCTTCHHHHHHHHH-HCTTCEEEEEESSCC-----------CCC--TTEEEEESCTTSHHHHHHHHHHHT
T ss_pred             cCCCCeEEEEeccCCcceEEEEee-ccccceEEEeecccc-----------ccc--CCceEeecccccchhhhhhhhhcc
Confidence            378899999999999998654443 456789999998762           222  578999999875332        1


Q ss_pred             CCCcceeehhhhc---cCChhH-------HHHHHHHHHhhccCCcEEEEeecCcc--eeeecccCCcccc-cCcEEEEEe
Q 042119          200 LGEYDCIFLAALV---GMSKEE-------KLTILGHIRKYMKDGGILLVRSAKGA--RAFLYPVVVEHDL-LDFEVLSAV  266 (286)
Q Consensus       200 l~~fD~V~~aalv---g~~~~~-------k~~vl~~l~~~l~pgg~lv~r~~~g~--r~~lyp~v~~~~l-~gf~~~~~~  266 (286)
                      -..||+|+-+...   |....+       -...+.-..+.|++||.+++.--+|-  ..++|      .+ .-|+.+.++
T Consensus        86 ~~~~DlVlSD~ap~~sg~~~~d~~~~~~L~~~~l~~a~~~Lk~gG~fV~K~F~g~~~~~l~~------~l~~~F~~V~~~  159 (180)
T d1ej0a_          86 DSKVQVVMSDMAPNMSGTPAVDIPRAMYLVELALEMCRDVLAPGGSFVVKVFQGEGFDEYLR------EIRSLFTKVKVR  159 (180)
T ss_dssp             TCCEEEEEECCCCCCCSCHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEEESSTTHHHHHH------HHHHHEEEEEEE
T ss_pred             CcceeEEEecccchhcccchhHHHHHHHHHHHHHHhhhhccCCCCcEEEEEecCccHHHHHH------HHHhhcCEEEEE
Confidence            2469999866432   221111       23456667889999999999865441  11221      12 358888888


Q ss_pred             cCccc-ceee--eEEEee
Q 042119          267 HPNDD-VINS--VVLVRN  281 (286)
Q Consensus       267 ~P~~~-vins--vi~~r~  281 (286)
                      .|... --|+  +++++.
T Consensus       160 KP~aSR~~SsE~Ylv~~g  177 (180)
T d1ej0a_         160 KPDSSRARSREVYIVATG  177 (180)
T ss_dssp             CCTTSCTTCCEEEEEEEE
T ss_pred             CCCCcccCCceEEEEEec
Confidence            88763 3333  566553

>d1gu7a2 c.2.1.1 (A:161-349) 2,4-dienoyl-CoA reductase {Yeast (Candida tropicalis) [TaxId: 5482]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: 2,4-dienoyl-CoA reductase
species: Yeast (Candida tropicalis) [TaxId: 5482]

Probab=97.28  E-value=0.00011  Score=60.37  Aligned_cols=103  Identities=13%  Similarity=0.037  Sum_probs=70.0

Q ss_pred             CCCCCCEEEEe--ccCCChhhHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEccccchhh------
Q 042119          127 GVVQPKKVAFV--GSGPMPLTSIIMAKHHLTSTHFDNFDIDEAANDVARSIVASDAEFEGRMKFLTRDIMEVKE------  198 (286)
Q Consensus       127 ~~~~~~~VL~I--G~G~lp~tai~lA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~g~l~~~i~f~~~D~~~~~~------  198 (286)
                      .++++.+|+.+  |+|++|..++.+|+.  .|++|+++-.+++..+...+.++++| ...-+..-..|..++..      
T Consensus        25 ~~~~g~~vli~~ga~g~vG~~aiqlAk~--~Ga~vI~~v~~~~~~~~~~~~~~~lG-ad~vi~~~~~~~~~~~~~v~~~~  101 (189)
T d1gu7a2          25 KLTPGKDWFIQNGGTSAVGKYASQIGKL--LNFNSISVIRDRPNLDEVVASLKELG-ATQVITEDQNNSREFGPTIKEWI  101 (189)
T ss_dssp             CCCTTTCEEEESCTTSHHHHHHHHHHHH--HTCEEEEEECCCTTHHHHHHHHHHHT-CSEEEEHHHHHCGGGHHHHHHHH
T ss_pred             CCCCCCEEEEEeCCCchHHHHHHHHHhh--cCCeEEEEEecccccchHHhhhhhcc-ccEEEeccccchhHHHHHHHHHH
Confidence            46788899998  667788999999995  79999998777777777777777888 33222222222222111      


Q ss_pred             --cCCCcceeehhhhccCChhHHHHHHHHHHhhccCCcEEEEee
Q 042119          199 --QLGEYDCIFLAALVGMSKEEKLTILGHIRKYMKDGGILLVRS  240 (286)
Q Consensus       199 --~l~~fD~V~~aalvg~~~~~k~~vl~~l~~~l~pgg~lv~r~  240 (286)
                        .-+++|+||-+  +|   .   ..+....+.|+|||+++.-.
T Consensus       102 ~~~g~~vdvv~D~--vg---~---~~~~~~~~~l~~~G~~v~~G  137 (189)
T d1gu7a2         102 KQSGGEAKLALNC--VG---G---KSSTGIARKLNNNGLMLTYG  137 (189)
T ss_dssp             HHHTCCEEEEEES--SC---H---HHHHHHHHTSCTTCEEEECC
T ss_pred             hhccCCceEEEEC--CC---c---chhhhhhhhhcCCcEEEEEC
Confidence              11368998854  22   1   24567789999999998764

>d1v3va2 c.2.1.1 (A:113-294) Leukotriene b4 12-hydroxydehydrogenase/prostaglandin 15-keto reductase {Guinea pig (Cavia porcellus) [TaxId: 10141]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Leukotriene b4 12-hydroxydehydrogenase/prostaglandin 15-keto reductase
species: Guinea pig (Cavia porcellus) [TaxId: 10141]

Probab=97.25  E-value=0.00019  Score=58.28  Aligned_cols=98  Identities=17%  Similarity=0.171  Sum_probs=69.4

Q ss_pred             cCCCCCCEEEEeccC-CChhhHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEccc--cc-hhh--c
Q 042119          126 NGVVQPKKVAFVGSG-PMPLTSIIMAKHHLTSTHFDNFDIDEAANDVARSIVASDAEFEGRMKFLTRDI--ME-VKE--Q  199 (286)
Q Consensus       126 ~~~~~~~~VL~IG~G-~lp~tai~lA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~g~l~~~i~f~~~D~--~~-~~~--~  199 (286)
                      ..++++++||..|+| ..|..++.+|+.  .|++|++++.+++..+.+++    .|.   ..-+...|-  .+ +..  .
T Consensus        25 ~~v~~G~~VlV~ga~ggvG~~aiqlak~--~Ga~vi~~~~~~~~~~~~~~----~Ga---~~vi~~~~~~~~~~~~~~~~   95 (182)
T d1v3va2          25 CGVKGGETVLVSAAAGAVGSVVGQIAKL--KGCKVVGAAGSDEKIAYLKQ----IGF---DAAFNYKTVNSLEEALKKAS   95 (182)
T ss_dssp             TCCCSSCEEEESSTTSHHHHHHHHHHHH--TTCEEEEEESSHHHHHHHHH----TTC---SEEEETTSCSCHHHHHHHHC
T ss_pred             hCCCCCCEEEEEeCCCchhHHHHHHHHc--cCCEEEEeCCCHHHHHHHHh----hhh---hhhcccccccHHHHHHHHhh
Confidence            356899999999885 488999999994  79999999999998777666    462   222322222  11 111  2


Q ss_pred             CCCcceeehhhhccCChhHHHHHHHHHHhhccCCcEEEEee
Q 042119          200 LGEYDCIFLAALVGMSKEEKLTILGHIRKYMKDGGILLVRS  240 (286)
Q Consensus       200 l~~fD~V~~aalvg~~~~~k~~vl~~l~~~l~pgg~lv~r~  240 (286)
                      -.++|+||.+.  |    .  +.++...+.|+|||.+++-.
T Consensus        96 ~~Gvd~v~D~v--G----~--~~~~~~~~~l~~~G~~v~~G  128 (182)
T d1v3va2          96 PDGYDCYFDNV--G----G--EFLNTVLSQMKDFGKIAICG  128 (182)
T ss_dssp             TTCEEEEEESS--C----H--HHHHHHGGGEEEEEEEEECC
T ss_pred             cCCCceeEEec--C----c--hhhhhhhhhccCCCeEEeec
Confidence            24699999653  3    1  36789999999999999853

>d1lssa_ c.2.1.9 (A:) Ktn Mja218 {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Potassium channel NAD-binding domain
domain: Ktn Mja218
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=97.20  E-value=0.0016  Score=49.85  Aligned_cols=93  Identities=16%  Similarity=0.120  Sum_probs=62.7

Q ss_pred             CEEEEeccCCChhhHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEccccchhh----cCCCcceee
Q 042119          132 KKVAFVGSGPMPLTSIIMAKHHLTSTHFDNFDIDEAANDVARSIVASDAEFEGRMKFLTRDIMEVKE----QLGEYDCIF  207 (286)
Q Consensus       132 ~~VL~IG~G~lp~tai~lA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~g~l~~~i~f~~~D~~~~~~----~l~~fD~V~  207 (286)
                      ++|+.+|+|.+|......-.  ..|..|+.+|.||+.++.+++.   .|     +.++.||+.+...    .+..+|.++
T Consensus         1 M~IvI~G~G~~G~~la~~L~--~~g~~v~vid~d~~~~~~~~~~---~~-----~~vi~Gd~~~~~~l~~~~i~~a~~vv   70 (132)
T d1lssa_           1 MYIIIAGIGRVGYTLAKSLS--EKGHDIVLIDIDKDICKKASAE---ID-----ALVINGDCTKIKTLEDAGIEDADMYI   70 (132)
T ss_dssp             CEEEEECCSHHHHHHHHHHH--HTTCEEEEEESCHHHHHHHHHH---CS-----SEEEESCTTSHHHHHHTTTTTCSEEE
T ss_pred             CEEEEECCCHHHHHHHHHHH--HCCCCcceecCChhhhhhhhhh---hh-----hhhccCcccchhhhhhcChhhhhhhc
Confidence            58999999988776553322  2689999999999988876543   34     5788999976432    345788776


Q ss_pred             hhhhccCChhHHHHHHHHHHhhccCCcEEEEe
Q 042119          208 LAALVGMSKEEKLTILGHIRKYMKDGGILLVR  239 (286)
Q Consensus       208 ~aalvg~~~~~k~~vl~~l~~~l~pgg~lv~r  239 (286)
                      ...  . + .+..-+...+.+.+.+.-+ ++|
T Consensus        71 ~~t--~-~-d~~N~~~~~~~k~~~~~~i-I~~   97 (132)
T d1lssa_          71 AVT--G-K-EEVNLMSSLLAKSYGINKT-IAR   97 (132)
T ss_dssp             ECC--S-C-HHHHHHHHHHHHHTTCCCE-EEE
T ss_pred             ccC--C-c-HHHHHHHHHHHHHcCCceE-EEE
Confidence            432  1 1 3444466667788888744 444

>d1ps9a3 c.4.1.1 (A:331-465,A:628-671) 2,4-dienoyl-CoA reductase, middle domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: 2,4-dienoyl-CoA reductase, middle domain
species: Escherichia coli [TaxId: 562]

Probab=96.92  E-value=0.0013  Score=53.84  Aligned_cols=77  Identities=25%  Similarity=0.335  Sum_probs=55.3

Q ss_pred             CCCCCEEEEeccCCChhhHHHHHhhcCCCcEEEEEeCCh-------------------HHHHHHHHHHHhcCCCCCCeEE
Q 042119          128 VVQPKKVAFVGSGPMPLTSIIMAKHHLTSTHFDNFDIDE-------------------AANDVARSIVASDAEFEGRMKF  188 (286)
Q Consensus       128 ~~~~~~VL~IG~G~lp~tai~lA~~~~~g~~V~~iDid~-------------------~ai~~Ar~~~~~~g~l~~~i~f  188 (286)
                      ...++||+.||+||-|+++...+.  ..|.+|+-+|.++                   +.+++-.+.+++.|     ++|
T Consensus        40 ~~~~k~V~IIGaGPAGL~AA~~la--~~G~~Vtl~E~~~~~GG~l~~~~~~p~~~~~~~~~~~~~~~~~~~g-----V~i  112 (179)
T d1ps9a3          40 AVQKKNLAVVGAGPAGLAFAINAA--ARGHQVTLFDAHSEIGGQFNIAKQIPGKEEFYETLRYYRRMIEVTG-----VTL  112 (179)
T ss_dssp             CSSCCEEEEECCSHHHHHHHHHHH--TTTCEEEEEESSSSSCTTHHHHTTSTTCTTHHHHHHHHHHHHHHHT-----CEE
T ss_pred             CCCCcEEEEECccHHHHHHHHHHH--hhccceEEEeccCccCceEEEEEeCcccchHHHHHHHHHHhhhcCC-----eEE
Confidence            367899999999999999988886  4899999999876                   34455556666666     455


Q ss_pred             EEccccchhhcCCCcceeehhhhc
Q 042119          189 LTRDIMEVKEQLGEYDCIFLAALV  212 (286)
Q Consensus       189 ~~~D~~~~~~~l~~fD~V~~aalv  212 (286)
                      ..+.--+ .....+||.|+++.-.
T Consensus       113 ~l~~~Vt-~~~~~~~d~vilAtG~  135 (179)
T d1ps9a3         113 KLNHTVT-ADQLQAFDETILASGI  135 (179)
T ss_dssp             EESCCCC-SSSSCCSSEEEECCCE
T ss_pred             EeCCEEc-ccccccceeEEEeecC
Confidence            5543322 1223579999987654

>d1mv8a2 c.2.1.6 (A:1-202) GDP-mannose 6-dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: GDP-mannose 6-dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=96.89  E-value=0.0021  Score=52.88  Aligned_cols=101  Identities=15%  Similarity=0.174  Sum_probs=60.3

Q ss_pred             CEEEEeccCCChhh-HHHHHhhcCCCcEEEEEeCChHHHHHHH------------HHHHhcCCCCCCeEEEEccccchhh
Q 042119          132 KKVAFVGSGPMPLT-SIIMAKHHLTSTHFDNFDIDEAANDVAR------------SIVASDAEFEGRMKFLTRDIMEVKE  198 (286)
Q Consensus       132 ~~VL~IG~G~lp~t-ai~lA~~~~~g~~V~~iDid~~ai~~Ar------------~~~~~~g~l~~~i~f~~~D~~~~~~  198 (286)
                      ++|..||+|-+|++ |..||+   .|.+|+|+|+|++.++.-+            +.+.... ...+..+ ..|..+   
T Consensus         1 MkI~ViGlG~vGl~~a~~la~---~g~~V~g~D~n~~~i~~ln~g~~p~~e~~~~~~l~~~~-~~~~~~~-~~~~~~---   72 (202)
T d1mv8a2           1 MRISIFGLGYVGAVCAGCLSA---RGHEVIGVDVSSTKIDLINQGKSPIVEPGLEALLQQGR-QTGRLSG-TTDFKK---   72 (202)
T ss_dssp             CEEEEECCSTTHHHHHHHHHH---TTCEEEEECSCHHHHHHHHTTCCSSCCTTHHHHHHHHH-HTTCEEE-ESCHHH---
T ss_pred             CEEEEECCCHhHHHHHHHHHh---CCCcEEEEeCCHHHHHHhcccCCcccchhhhhhhhhhh-ccccccc-CCCHHH---
Confidence            58999999999987 566666   7899999999998876532            2222211 1233333 233322   


Q ss_pred             cCCCcceeehhhhccC------ChhHHHHHHHHH---HhhccCCcEEEEee
Q 042119          199 QLGEYDCIFLAALVGM------SKEEKLTILGHI---RKYMKDGGILLVRS  240 (286)
Q Consensus       199 ~l~~fD~V~~aalvg~------~~~~k~~vl~~l---~~~l~pgg~lv~r~  240 (286)
                      .....|++|++.-...      +...-..+++.+   .+..+++..+++++
T Consensus        73 ~i~~~d~i~i~VpTP~~~~~~~d~~~~~~~~~~i~~~~~~~~~~~liii~S  123 (202)
T d1mv8a2          73 AVLDSDVSFICVGTPSKKNGDLDLGYIETVCREIGFAIREKSERHTVVVRS  123 (202)
T ss_dssp             HHHTCSEEEECCCCCBCTTSSBCCHHHHHHHHHHHHHHTTCCSCCEEEECS
T ss_pred             HHhhCCEEEEecCccccccccccchhhhhhhhhhhheeecccCCcceeecc
Confidence            2235688876643211      112223444444   44556889999987

>d1vj1a2 c.2.1.1 (A:125-311) Putative zinc-binding alcohol dehydrogenase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Putative zinc-binding alcohol dehydrogenase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.77  E-value=0.0013  Score=53.46  Aligned_cols=100  Identities=11%  Similarity=0.135  Sum_probs=63.5

Q ss_pred             CCCCC--CEEEEec-cCCChhhHHHHHhhcCCCc-EEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEccccchhhc--C
Q 042119          127 GVVQP--KKVAFVG-SGPMPLTSIIMAKHHLTST-HFDNFDIDEAANDVARSIVASDAEFEGRMKFLTRDIMEVKEQ--L  200 (286)
Q Consensus       127 ~~~~~--~~VL~IG-~G~lp~tai~lA~~~~~g~-~V~~iDid~~ai~~Ar~~~~~~g~l~~~i~f~~~D~~~~~~~--l  200 (286)
                      .++++  +.||.-| +|+.|..++.+|+.  .|+ .|++++.+++.....   ...+| ...-+++...|..+....  .
T Consensus        25 ~~~~G~~etVLI~gaaGgVG~~aiQlak~--~Ga~~vi~~~~~~e~~~~l---~~~~g-ad~vi~~~~~~~~~~~~~~~~   98 (187)
T d1vj1a2          25 HISAGSNQTMVVSGAAGACGSLAGQIGHL--LGCSRVVGICGTQEKCLFL---TSELG-FDAAVNYKTGNVAEQLREACP   98 (187)
T ss_dssp             CCCTTSCCEEEESSTTSTTGGGHHHHHHH--TTCSEEEEEESSHHHHHHH---HHHSC-CSEEEETTSSCHHHHHHHHCT
T ss_pred             CCCCCCCCEEEEECCCchhhHHHHHHHHH--cCCcceecccchHHHHhhh---hhccc-ceEEeeccchhHHHHHHHHhc
Confidence            34554  7899999 69999999999993  566 577777776654433   33356 222223322233222221  2


Q ss_pred             CCcceeehhhhccCChhHHHHHHHHHHhhccCCcEEEEee
Q 042119          201 GEYDCIFLAALVGMSKEEKLTILGHIRKYMKDGGILLVRS  240 (286)
Q Consensus       201 ~~fD~V~~aalvg~~~~~k~~vl~~l~~~l~pgg~lv~r~  240 (286)
                      .++|+||-+.  |   .   +.++...+.|+|||++++-.
T Consensus        99 ~GvDvv~D~v--G---g---~~~~~~~~~l~~~G~iv~~G  130 (187)
T d1vj1a2          99 GGVDVYFDNV--G---G---DISNTVISQMNENSHIILCG  130 (187)
T ss_dssp             TCEEEEEESS--C---H---HHHHHHHTTEEEEEEEEEC-
T ss_pred             cCceEEEecC--C---c---hhHHHHhhhccccccEEEec
Confidence            4699998543  2   1   36788999999999998753

>d1xa0a2 c.2.1.1 (A:119-294) B. subtilis YhfP homologue {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: B. subtilis YhfP homologue
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=96.74  E-value=0.00054  Score=55.96  Aligned_cols=99  Identities=15%  Similarity=0.095  Sum_probs=67.7

Q ss_pred             CCCCCCEEEEec-cCCChhhHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEccccchhhc--CCCc
Q 042119          127 GVVQPKKVAFVG-SGPMPLTSIIMAKHHLTSTHFDNFDIDEAANDVARSIVASDAEFEGRMKFLTRDIMEVKEQ--LGEY  203 (286)
Q Consensus       127 ~~~~~~~VL~IG-~G~lp~tai~lA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~g~l~~~i~f~~~D~~~~~~~--l~~f  203 (286)
                      ...++++||.-| +|..|..++.+|+.  .|++|++...+++-.+++++    +| ...-++... +..+....  -++|
T Consensus        28 ~~~~g~~VLI~gaaGGVG~~aiQlak~--~Ga~Viat~~s~~k~~~~~~----lG-a~~vi~~~~-~~~~~~~~~~~~gv   99 (176)
T d1xa0a2          28 LTPERGPVLVTGATGGVGSLAVSMLAK--RGYTVEASTGKAAEHDYLRV----LG-AKEVLARED-VMAERIRPLDKQRW   99 (176)
T ss_dssp             CCGGGCCEEESSTTSHHHHHHHHHHHH--TTCCEEEEESCTTCHHHHHH----TT-CSEEEECC----------CCSCCE
T ss_pred             CCCCCCEEEEEeccchHHHHHHHHHHH--cCCceEEecCchHHHHHHHh----cc-cceeeecch-hHHHHHHHhhccCc
Confidence            456789999999 57788999999984  79999999999999888876    45 222222211 11111111  2479


Q ss_pred             ceeehhhhccCChhHHHHHHHHHHhhccCCcEEEEeec
Q 042119          204 DCIFLAALVGMSKEEKLTILGHIRKYMKDGGILLVRSA  241 (286)
Q Consensus       204 D~V~~aalvg~~~~~k~~vl~~l~~~l~pgg~lv~r~~  241 (286)
                      |+|+..  +|.      ..++...+.|+|||+++.-..
T Consensus       100 D~vid~--vgg------~~~~~~l~~l~~~Griv~~G~  129 (176)
T d1xa0a2         100 AAAVDP--VGG------RTLATVLSRMRYGGAVAVSGL  129 (176)
T ss_dssp             EEEEEC--STT------TTHHHHHHTEEEEEEEEECSC
T ss_pred             CEEEEc--CCc------hhHHHHHHHhCCCceEEEeec
Confidence            998854  331      257788999999999998764

>d1ldna1 c.2.1.5 (A:15-162) Lactate dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=96.71  E-value=0.014  Score=45.69  Aligned_cols=107  Identities=13%  Similarity=0.108  Sum_probs=68.0

Q ss_pred             CCCCEEEEeccCCChhhHHHHHhhcCCCcEEEEEeCChHH-HHHHHHHHHhcCCCCCCeEEEEccccchhhcCCCcceee
Q 042119          129 VQPKKVAFVGSGPMPLTSIIMAKHHLTSTHFDNFDIDEAA-NDVARSIVASDAEFEGRMKFLTRDIMEVKEQLGEYDCIF  207 (286)
Q Consensus       129 ~~~~~VL~IG~G~lp~tai~lA~~~~~g~~V~~iDid~~a-i~~Ar~~~~~~g~l~~~i~f~~~D~~~~~~~l~~fD~V~  207 (286)
                      ..++||..||+|-.|.+..+.........++.-+|++++. -..|..+-.........+.+..+|.    .++.+.|+|+
T Consensus         4 ~~~~KI~IiGaG~vG~~~a~~l~~~~l~~el~L~Di~~~~~~g~a~Dl~~~~~~~~~~~~~~~~d~----~~l~daDvvv   79 (148)
T d1ldna1           4 NGGARVVVIGAGFVGASYVFALMNQGIADEIVLIDANESKAIGDAMDFNHGKVFAPKPVDIWHGDY----DDCRDADLVV   79 (148)
T ss_dssp             TTSCEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSSHHHHHHHHHHHHHHTTSSSSCCEEEECCG----GGTTTCSEEE
T ss_pred             CCCCeEEEECcCHHHHHHHHHHHhcCCCceEEEEeeccccccchhccHhhCccccCCCeEEEECCH----HHhccceeEE
Confidence            4578999999998887755544422345689999999875 4455555544332345666766664    3456789998


Q ss_pred             hhhhc----cCC--------hhHHHHHHHHHHhhccCCcEEEEee
Q 042119          208 LAALV----GMS--------KEEKLTILGHIRKYMKDGGILLVRS  240 (286)
Q Consensus       208 ~aalv----g~~--------~~~k~~vl~~l~~~l~pgg~lv~r~  240 (286)
                      +++..    +++        .+.-.++.+.+.++ .|+|.+++-+
T Consensus        80 itag~~~~~~~~R~dl~~~N~~i~~~i~~~i~~~-~p~a~~ivvt  123 (148)
T d1ldna1          80 ICAGANQKPGETRLDLVDKNIAIFRSIVESVMAS-GFQGLFLVAT  123 (148)
T ss_dssp             ECCSCCCCTTTCSGGGHHHHHHHHHHHHHHHHHH-TCCSEEEECS
T ss_pred             EecccccccCcchhHHHHHHHHHHHHHHHHHHhh-CCCceEEEec
Confidence            76643    222        12234456666665 6888887754

>d1yqga2 c.2.1.6 (A:1-152) Pyrroline-5-carboxylate reductase ProC {Neisseria meningitidis, serogroup B [TaxId: 487]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Pyrroline-5-carboxylate reductase ProC
species: Neisseria meningitidis, serogroup B [TaxId: 487]

Probab=96.64  E-value=0.0031  Score=49.44  Aligned_cols=89  Identities=17%  Similarity=0.195  Sum_probs=57.1

Q ss_pred             CEEEEeccCCChhhHHH-HHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEccccchhhcCCCcceeehhh
Q 042119          132 KKVAFVGSGPMPLTSII-MAKHHLTSTHFDNFDIDEAANDVARSIVASDAEFEGRMKFLTRDIMEVKEQLGEYDCIFLAA  210 (286)
Q Consensus       132 ~~VL~IG~G~lp~tai~-lA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~g~l~~~i~f~~~D~~~~~~~l~~fD~V~~aa  210 (286)
                      ++|.|||+|.+|.+-+. |.+.  .+.+|..+|++++..+..++   +.|     ++.. .|.    ....+.|+||++.
T Consensus         1 MkI~fIG~G~MG~ai~~~l~~~--~~~~i~v~~r~~~~~~~l~~---~~~-----~~~~-~~~----~~v~~~Div~lav   65 (152)
T d1yqga2           1 MNVYFLGGGNMAAAVAGGLVKQ--GGYRIYIANRGAEKRERLEK---ELG-----VETS-ATL----PELHSDDVLILAV   65 (152)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHH--CSCEEEEECSSHHHHHHHHH---HTC-----CEEE-SSC----CCCCTTSEEEECS
T ss_pred             CEEEEEcCcHHHHHHHHHHHHC--CCCcEEEEeCChhHHHHhhh---hcc-----cccc-ccc----ccccccceEEEec
Confidence            48999999998865432 4442  34799999999987655433   345     2322 222    2345689999873


Q ss_pred             hccCChhHHHHHHHHHHhhccCCcEEEEeecCc
Q 042119          211 LVGMSKEEKLTILGHIRKYMKDGGILLVRSAKG  243 (286)
Q Consensus       211 lvg~~~~~k~~vl~~l~~~l~pgg~lv~r~~~g  243 (286)
                      -      +  +.+..+.+.+++.+.+++....|
T Consensus        66 k------P--~~~~~v~~~l~~~~~~viS~~ag   90 (152)
T d1yqga2          66 K------P--QDMEAACKNIRTNGALVLSVAAG   90 (152)
T ss_dssp             C------H--HHHHHHHTTCCCTTCEEEECCTT
T ss_pred             C------H--HHHHHhHHHHhhcccEEeecccC
Confidence            1      2  34556666777777777765544

>d2hmva1 c.2.1.9 (A:7-140) Ktn bsu222 {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Potassium channel NAD-binding domain
domain: Ktn bsu222
species: Bacillus subtilis [TaxId: 1423]

Probab=96.61  E-value=0.0023  Score=48.75  Aligned_cols=94  Identities=16%  Similarity=0.136  Sum_probs=62.8

Q ss_pred             CEEEEeccCCChhhHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEccccchhh----cCCCcceee
Q 042119          132 KKVAFVGSGPMPLTSIIMAKHHLTSTHFDNFDIDEAANDVARSIVASDAEFEGRMKFLTRDIMEVKE----QLGEYDCIF  207 (286)
Q Consensus       132 ~~VL~IG~G~lp~tai~lA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~g~l~~~i~f~~~D~~~~~~----~l~~fD~V~  207 (286)
                      ++++.+|+|.+|........  ..|..|+.+|.|+++++.+++    .|     ...+.+|+.+...    .+.++|.|+
T Consensus         1 k~~iIiG~G~~G~~la~~L~--~~g~~vvvid~d~~~~~~~~~----~~-----~~~~~gd~~~~~~l~~a~i~~a~~vi   69 (134)
T d2hmva1           1 KQFAVIGLGRFGGSIVKELH--RMGHEVLAVDINEEKVNAYAS----YA-----THAVIANATEENELLSLGIRNFEYVI   69 (134)
T ss_dssp             CCEEEECCSHHHHHHHHHHH--HTTCCCEEEESCHHHHHHTTT----TC-----SEEEECCTTCTTHHHHHTGGGCSEEE
T ss_pred             CEEEEECCCHHHHHHHHHHH--HCCCeEEEecCcHHHHHHHHH----hC-----CcceeeecccchhhhccCCccccEEE
Confidence            47889999988876553333  278999999999999887642    33     3567799876321    234678777


Q ss_pred             hhhhccCChhHHHHHHHHHHhhccCCcEEEEee
Q 042119          208 LAALVGMSKEEKLTILGHIRKYMKDGGILLVRS  240 (286)
Q Consensus       208 ~aalvg~~~~~k~~vl~~l~~~l~pgg~lv~r~  240 (286)
                      ++..-    .+...++-.+.+.+.|...++.|.
T Consensus        70 ~~~~~----~~~~~~~~~~~~~~~~~~~iiar~   98 (134)
T d2hmva1          70 VAIGA----NIQASTLTTLLLKELDIPNIWVKA   98 (134)
T ss_dssp             ECCCS----CHHHHHHHHHHHHHTTCSEEEEEC
T ss_pred             EEcCc----hHHhHHHHHHHHHHcCCCcEEeec
Confidence            55321    234445555566667778888885

>d2okca1 c.66.1.45 (A:9-433) Type I restriction enzyme StySJI M protein {Bacteroides thetaiotaomicron [TaxId: 818]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: N-6 DNA Methylase-like
domain: Type I restriction enzyme StySJI M protein
species: Bacteroides thetaiotaomicron [TaxId: 818]

Probab=96.60  E-value=0.0028  Score=58.02  Aligned_cols=125  Identities=15%  Similarity=0.083  Sum_probs=81.6

Q ss_pred             hhhhHHHHHHHHhcCCCCCCEEEEeccCCChhhHHHHHhhc--C---------CCcEEEEEeCChHHHHHHHHHHHhcCC
Q 042119          113 VKLSKLEYTILSENGVVQPKKVAFVGSGPMPLTSIIMAKHH--L---------TSTHFDNFDIDEAANDVARSIVASDAE  181 (286)
Q Consensus       113 ~~l~~~E~~~l~~~~~~~~~~VL~IG~G~lp~tai~lA~~~--~---------~g~~V~~iDid~~ai~~Ar~~~~~~g~  181 (286)
                      ..+++.=...+   .+.++.+|+|-.||++++....+-.-.  .         ....+.|+|+++.+...|+-...-.|.
T Consensus       148 ~~Iv~~mv~ll---~~~~~~~IlDPacGsG~fL~~a~~~~~~~~~~~~~~~~~~~~~l~g~E~~~~~~~la~~n~~l~g~  224 (425)
T d2okca1         148 RPLIQAMVDCI---NPQMGETVCDPACGTGGFLLTAYDYMKGQSASKEKRDFLRDKALHGVDNTPLVVTLASMNLYLHGI  224 (425)
T ss_dssp             HHHHHHHHHHH---CCCTTCCEEETTCTTCHHHHHHHHHHHTCC-CCHHHHHHHHTTEEEEESCHHHHHHHHHHHHHTTC
T ss_pred             hhhhHhhheec---cCcccceeeccccccCccHHHHHHHHHhhccchhhhhhhhhhhhhhhhccHHHHHHHHhhhhhcCC
Confidence            34555444433   457789999999999887544332100  0         123599999999999999988776663


Q ss_pred             CCCCeEEEEccccchhhcCCCcceeehhhhccCC----------------hhHHHHHHHHHHhhccCCcEEEEeec
Q 042119          182 FEGRMKFLTRDIMEVKEQLGEYDCIFLAALVGMS----------------KEEKLTILGHIRKYMKDGGILLVRSA  241 (286)
Q Consensus       182 l~~~i~f~~~D~~~~~~~l~~fD~V~~aalvg~~----------------~~~k~~vl~~l~~~l~pgg~lv~r~~  241 (286)
                      -....++..+|..+.. ....||+|+..--.|..                ......+++++.+.|+|||++++--+
T Consensus       225 ~~~~~~i~~~d~l~~~-~~~~fD~Ii~NPPfg~~~~~~~~~~~~~~~~~~~~~~~~Fi~~~~~~Lk~~G~~~iI~p  299 (425)
T d2okca1         225 GTDRSPIVCEDSLEKE-PSTLVDVILANPPFGTRPAGSVDINRPDFYVETKNNQLNFLQHMMLMLKTGGRAAVVLP  299 (425)
T ss_dssp             CSSCCSEEECCTTTSC-CSSCEEEEEECCCSSCCCTTCCCCCCTTSSSCCSCHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred             ccccceeecCchhhhh-cccccceEEecCCCCCCccccchhhhhhcccccccHHHHHHHHHHHhcCCCCeEEEEec
Confidence            2345678888875422 23479998744211111                01124599999999999998777543

>d1a5za1 c.2.1.5 (A:22-163) Lactate dehydrogenase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Thermotoga maritima [TaxId: 2336]

Probab=96.54  E-value=0.015  Score=45.21  Aligned_cols=103  Identities=19%  Similarity=0.308  Sum_probs=63.7

Q ss_pred             CEEEEeccCCChhhHHHHHhhcCCCcEEEEEeCChHHHH-HHHHHHHhcCCCCCCeEEEEccccchhhcCCCcceeehhh
Q 042119          132 KKVAFVGSGPMPLTSIIMAKHHLTSTHFDNFDIDEAAND-VARSIVASDAEFEGRMKFLTRDIMEVKEQLGEYDCIFLAA  210 (286)
Q Consensus       132 ~~VL~IG~G~lp~tai~lA~~~~~g~~V~~iDid~~ai~-~Ar~~~~~~g~l~~~i~f~~~D~~~~~~~l~~fD~V~~aa  210 (286)
                      .||..||+|..|.+............++.-+|++++..+ .+..+..... +..+..+..+|..    ++.+.|+|++++
T Consensus         1 mKI~IIGaG~VG~~~a~~l~~~~l~~el~L~Di~~~~~~g~~~Dl~~~~~-~~~~~~~~~~~~~----~~~~adivvita   75 (140)
T d1a5za1           1 MKIGIVGLGRVGSSTAFALLMKGFAREMVLIDVDKKRAEGDALDLIHGTP-FTRRANIYAGDYA----DLKGSDVVIVAA   75 (140)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSSHHHHHHHHHHHHHHGG-GSCCCEEEECCGG----GGTTCSEEEECC
T ss_pred             CEEEEECcCHHHHHHHHHHHhCCCCCEEEEEecccccccchhcccccccc-ccccccccCCcHH----HhcCCCEEEEec
Confidence            489999999888875543332234568999999987654 4444445444 4456777766642    356789998876


Q ss_pred             hc----cCChhH----HHHHH----HHHHhhccCCcEEEEee
Q 042119          211 LV----GMSKEE----KLTIL----GHIRKYMKDGGILLVRS  240 (286)
Q Consensus       211 lv----g~~~~~----k~~vl----~~l~~~l~pgg~lv~r~  240 (286)
                      -.    |+...+    -.+++    +.+.+. .|++++++-+
T Consensus        76 g~~~~~g~~r~dl~~~N~~I~~~i~~~i~~~-~p~aivivvt  116 (140)
T d1a5za1          76 GVPQKPGETRLQLLGRNARVMKEIARNVSKY-APDSIVIVVT  116 (140)
T ss_dssp             CCCCCSSCCHHHHHHHHHHHHHHHHHHHHHH-CTTCEEEECS
T ss_pred             ccccCCCcchhhhhccccchHHHHHHHHHhc-CCCcEEEEeC
Confidence            44    333222    12233    444433 6788877754

>d1obba1 c.2.1.5 (A:2-172) Alpha-glucosidase AglA {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Alpha-glucosidase AglA
species: Thermotoga maritima [TaxId: 2336]

Probab=96.52  E-value=0.0024  Score=51.64  Aligned_cols=78  Identities=22%  Similarity=0.351  Sum_probs=49.5

Q ss_pred             CCCEEEEeccCCChhhHHH---HHh-hcCCCcEEEEEeCChHHHHH----HHHHHHhcCCCCCCeEEEEccccchhhcCC
Q 042119          130 QPKKVAFVGSGPMPLTSII---MAK-HHLTSTHFDNFDIDEAANDV----ARSIVASDAEFEGRMKFLTRDIMEVKEQLG  201 (286)
Q Consensus       130 ~~~~VL~IG~G~lp~tai~---lA~-~~~~g~~V~~iDid~~ai~~----Ar~~~~~~g~l~~~i~f~~~D~~~~~~~l~  201 (286)
                      |..||..||+|..|+|...   +++ ..+.+.+++-+|+|++.++.    .++.+...+   ...++...+  +....+.
T Consensus         1 p~mKI~iIGaGsvg~t~~~~~~l~~~~~l~~~eivL~Did~~~~~~~~~~~~~~~~~~~---~~~~i~~~t--d~~eaL~   75 (171)
T d1obba1           1 PSVKIGIIGAGSAVFSLRLVSDLCKTPGLSGSTVTLMDIDEERLDAILTIAKKYVEEVG---ADLKFEKTM--NLDDVII   75 (171)
T ss_dssp             CCCEEEEETTTCHHHHHHHHHHHHTCGGGTTCEEEEECSCHHHHHHHHHHHHHHHHHTT---CCCEEEEES--CHHHHHT
T ss_pred             CCcEEEEECCCHHHhHHHHHHHHHhccccCCCEEEEEeCCchHHHHHHHHHHHHHHhcC---CCeEEEEeC--Chhhccc
Confidence            4689999999998877433   232 12345799999999997764    333344445   344443322  2334556


Q ss_pred             Ccceeehhhhc
Q 042119          202 EYDCIFLAALV  212 (286)
Q Consensus       202 ~fD~V~~aalv  212 (286)
                      +.|+|+..+.+
T Consensus        76 dad~Vv~~~~~   86 (171)
T d1obba1          76 DADFVINTAMV   86 (171)
T ss_dssp             TCSEEEECCCT
T ss_pred             CCCeEeeeccc
Confidence            78999876554

>d1ez4a1 c.2.1.5 (A:16-162) Lactate dehydrogenase {Lactobacillus pentosus [TaxId: 1589]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Lactobacillus pentosus [TaxId: 1589]

Probab=96.44  E-value=0.0099  Score=46.65  Aligned_cols=105  Identities=19%  Similarity=0.220  Sum_probs=63.1

Q ss_pred             CCCEEEEeccCCChhhHHHHHhhcCCCcEEEEEeCChHHH-HHHHHHHHhcCCCCCCeEEEEccccchhhcCCCcceeeh
Q 042119          130 QPKKVAFVGSGPMPLTSIIMAKHHLTSTHFDNFDIDEAAN-DVARSIVASDAEFEGRMKFLTRDIMEVKEQLGEYDCIFL  208 (286)
Q Consensus       130 ~~~~VL~IG~G~lp~tai~lA~~~~~g~~V~~iDid~~ai-~~Ar~~~~~~g~l~~~i~f~~~D~~~~~~~l~~fD~V~~  208 (286)
                      ..+||..||+|..|.+............+++.+|++++.. ..|..+-.... ......+..+|-.    ++.+.|+|++
T Consensus         4 ~~~KI~IIGaG~VG~~~A~~l~~~~~~~elvL~D~~~~~~~g~a~Dl~~a~~-~~~~~~~~~~d~~----~~~~adivvi   78 (146)
T d1ez4a1           4 NHQKVVLVGDGAVGSSYAFAMAQQGIAEEFVIVDVVKDRTKGDALDLEDAQA-FTAPKKIYSGEYS----DCKDADLVVI   78 (146)
T ss_dssp             TBCEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSSHHHHHHHHHHHHGGGG-GSCCCEEEECCGG----GGTTCSEEEE
T ss_pred             CCCEEEEECCCHHHHHHHHHHHhcCCCcEEEEeecccchhHHHHHHHhcccc-ccCCceEeeccHH----HhccccEEEE
Confidence            4579999999998887554443223346899999998743 24444433333 2344566777753    4467899988


Q ss_pred             hhhc----cCChh--------HHHHHHHHHHhhccCCcEEEEee
Q 042119          209 AALV----GMSKE--------EKLTILGHIRKYMKDGGILLVRS  240 (286)
Q Consensus       209 aalv----g~~~~--------~k~~vl~~l~~~l~pgg~lv~r~  240 (286)
                      .+-.    +++..        .-.++.+.+.+. .|++++++-+
T Consensus        79 tag~~~~~g~~r~~l~~~N~~i~~~~~~~i~~~-~p~aivivvt  121 (146)
T d1ez4a1          79 TAGAPQKPGESRLDLVNKNLNILSSIVKPVVDS-GFDGIFLVAA  121 (146)
T ss_dssp             CCCC----------CHHHHHHHHHHHHHHHHHT-TCCSEEEECS
T ss_pred             ecccccCCCCCHHHHHHHHHHHHHHHHHHHhhc-CCCcEEEEeC
Confidence            7643    22111        122444555544 6788887765

>d1hyha1 c.2.1.5 (A:21-166) L-2-hydroxyisocapronate dehydrogenase, L-HICDH {Lactobacillus confusus [TaxId: 1583]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: L-2-hydroxyisocapronate dehydrogenase, L-HICDH
species: Lactobacillus confusus [TaxId: 1583]

Probab=96.35  E-value=0.011  Score=46.39  Aligned_cols=105  Identities=14%  Similarity=0.136  Sum_probs=64.3

Q ss_pred             CEEEEeccCCChhhHHHHHhhcCCCcEEEEEeCChHHH-HHHHHHHHhcCCCCCCeEEEEccccchhhcCCCcceeehhh
Q 042119          132 KKVAFVGSGPMPLTSIIMAKHHLTSTHFDNFDIDEAAN-DVARSIVASDAEFEGRMKFLTRDIMEVKEQLGEYDCIFLAA  210 (286)
Q Consensus       132 ~~VL~IG~G~lp~tai~lA~~~~~g~~V~~iDid~~ai-~~Ar~~~~~~g~l~~~i~f~~~D~~~~~~~l~~fD~V~~aa  210 (286)
                      +||..||+|..|.+............+++-+|++++.. ..+..+.+....+........+|.    .++.+.|+|++.+
T Consensus         2 kKI~IIGaG~VG~~~a~~l~~~~~~~elvL~Di~~~~~~g~~~Dl~~a~~~~~~~~~~~~~d~----~~l~~adiVVita   77 (146)
T d1hyha1           2 RKIGIIGLGNVGAAVAHGLIAQGVADDYVFIDANEAKVKADQIDFQDAMANLEAHGNIVINDW----AALADADVVISTL   77 (146)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSSHHHHHHHHHHHHHHGGGSSSCCEEEESCG----GGGTTCSEEEECC
T ss_pred             CeEEEECcCHHHHHHHHHHHhcCCCceEEEEecccchhhhHHHhhhccccccCCccceeccCH----HHhccccEEEEec
Confidence            69999999988877666333223346899999999864 344445444332344566667774    3456789998765


Q ss_pred             hc--------cCCh----hHHHHHHHHHHhhc---cCCcEEEEee
Q 042119          211 LV--------GMSK----EEKLTILGHIRKYM---KDGGILLVRS  240 (286)
Q Consensus       211 lv--------g~~~----~~k~~vl~~l~~~l---~pgg~lv~r~  240 (286)
                      -+        +++.    ..-.++++++.+.+   .|++++++-+
T Consensus        78 G~~~~~~~~~g~~R~~l~~~N~~i~~~i~~~i~~~~p~aivivvt  122 (146)
T d1hyha1          78 GNIKLQQDNPTGDRFAELKFTSSMVQSVGTNLKESGFHGVLVVIS  122 (146)
T ss_dssp             SCGGGTC-------CTTHHHHHHHHHHHHHHHHHTTCCSEEEECS
T ss_pred             cccccccccCCccHHHHHHHHHHHHHHHHHHHhhcCCCeEEEEec
Confidence            43        1111    11234555555544   6888888765

>d1id1a_ c.2.1.9 (A:) Rck domain from putative potassium channel Kch {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Potassium channel NAD-binding domain
domain: Rck domain from putative potassium channel Kch
species: Escherichia coli [TaxId: 562]

Probab=96.32  E-value=0.013  Score=45.57  Aligned_cols=99  Identities=6%  Similarity=0.015  Sum_probs=65.3

Q ss_pred             CCEEEEeccCCChhhHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEccccchh----hcCCCccee
Q 042119          131 PKKVAFVGSGPMPLTSIIMAKHHLTSTHFDNFDIDEAANDVARSIVASDAEFEGRMKFLTRDIMEVK----EQLGEYDCI  206 (286)
Q Consensus       131 ~~~VL~IG~G~lp~tai~lA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~g~l~~~i~f~~~D~~~~~----~~l~~fD~V  206 (286)
                      ..+|+.+|+|..|...+..-.  ..|..|+.||.|++......+....     ..+.++.||+.+..    ..++..|.|
T Consensus         3 knHiII~G~g~~g~~l~~~L~--~~~~~v~vId~d~~~~~~~~~~~~~-----~~~~vi~Gd~~d~~~L~~a~i~~a~~v   75 (153)
T d1id1a_           3 KDHFIVCGHSILAINTILQLN--QRGQNVTVISNLPEDDIKQLEQRLG-----DNADVIPGDSNDSSVLKKAGIDRCRAI   75 (153)
T ss_dssp             CSCEEEECCSHHHHHHHHHHH--HTTCCEEEEECCCHHHHHHHHHHHC-----TTCEEEESCTTSHHHHHHHTTTTCSEE
T ss_pred             CCEEEEECCCHHHHHHHHHHH--HcCCCEEEEeccchhHHHHHHHhhc-----CCcEEEEccCcchHHHHHhccccCCEE
Confidence            458999999987765544333  2688999999999764433332222     45899999997632    134567887


Q ss_pred             ehhhhccCChhHHHHHHHHHHhhccCCcEEEEee
Q 042119          207 FLAALVGMSKEEKLTILGHIRKYMKDGGILLVRS  240 (286)
Q Consensus       207 ~~aalvg~~~~~k~~vl~~l~~~l~pgg~lv~r~  240 (286)
                      +...-   + ..+.-..-...+.+.|...++++.
T Consensus        76 i~~~~---~-d~~n~~~~~~~r~~~~~~~iia~~  105 (153)
T d1id1a_          76 LALSD---N-DADNAFVVLSAKDMSSDVKTVLAV  105 (153)
T ss_dssp             EECSS---C-HHHHHHHHHHHHHHTSSSCEEEEC
T ss_pred             EEccc---c-HHHHHHHHHHHHHhCCCCceEEEE
Confidence            75421   1 334445556677788999888885

>d1llda1 c.2.1.5 (A:7-149) Lactate dehydrogenase {Bifidobacterium longum, strain am101-2 [TaxId: 216816]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Bifidobacterium longum, strain am101-2 [TaxId: 216816]

Probab=96.31  E-value=0.012  Score=45.98  Aligned_cols=105  Identities=19%  Similarity=0.181  Sum_probs=64.4

Q ss_pred             CCEEEEeccCCChhhHHHHHhhcCCCcEEEEEeCChHHH-HHHHHHHHhcCCCCCCeEEEEccccchhhcCCCcceeehh
Q 042119          131 PKKVAFVGSGPMPLTSIIMAKHHLTSTHFDNFDIDEAAN-DVARSIVASDAEFEGRMKFLTRDIMEVKEQLGEYDCIFLA  209 (286)
Q Consensus       131 ~~~VL~IG~G~lp~tai~lA~~~~~g~~V~~iDid~~ai-~~Ar~~~~~~g~l~~~i~f~~~D~~~~~~~l~~fD~V~~a  209 (286)
                      |.||..||+|..|.+............++.-+|++++.. ..+..+-.... .....++..++-.   .++.+.|+|+++
T Consensus         1 p~Ki~IIGaG~VG~~~a~~l~~~~l~~ElvL~D~~~~~~~g~a~Dl~~a~~-~~~~~~i~~~~~~---~~~~daDvVVit   76 (143)
T d1llda1           1 PTKLAVIGAGAVGSTLAFAAAQRGIAREIVLEDIAKERVEAEVLDMQHGSS-FYPTVSIDGSDDP---EICRDADMVVIT   76 (143)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCCSEEEEECSSHHHHHHHHHHHHHTGG-GSTTCEEEEESCG---GGGTTCSEEEEC
T ss_pred             CCEEEEECCCHHHHHHHHHHHhcCCCcEEEEEEeccccchhHHHHHHhccc-cCCCceeecCCCH---HHhhCCcEEEEe
Confidence            679999999999988654443223456899999998754 33444444434 3345566555432   244578999887


Q ss_pred             hhc----cCChhH--------HHHHHHHHHhhccCCcEEEEee
Q 042119          210 ALV----GMSKEE--------KLTILGHIRKYMKDGGILLVRS  240 (286)
Q Consensus       210 alv----g~~~~~--------k~~vl~~l~~~l~pgg~lv~r~  240 (286)
                      +-.    +++..+        -.++...+.+. .|+|++++-+
T Consensus        77 aG~~~~~g~~R~dl~~~N~~i~~~i~~~i~~~-~p~ai~ivvt  118 (143)
T d1llda1          77 AGPRQKPGQSRLELVGATVNILKAIMPNLVKV-APNAIYMLIT  118 (143)
T ss_dssp             CCCCCCTTCCHHHHHHHHHHHHHHHHHHHHHH-CTTSEEEECC
T ss_pred             cccccCCCCchhhhhhhhHHHHHHHHHHHHhh-CCCeEEEEeC
Confidence            754    333222        22344555554 6788877754

>d1ks9a2 c.2.1.6 (A:1-167) Ketopantoate reductase PanE {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Ketopantoate reductase PanE
species: Escherichia coli [TaxId: 562]

Probab=96.27  E-value=0.00036  Score=54.86  Aligned_cols=95  Identities=8%  Similarity=0.018  Sum_probs=56.9

Q ss_pred             CEEEEeccCCChhhH-HHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEccccchhhcCCCcceeehhh
Q 042119          132 KKVAFVGSGPMPLTS-IIMAKHHLTSTHFDNFDIDEAANDVARSIVASDAEFEGRMKFLTRDIMEVKEQLGEYDCIFLAA  210 (286)
Q Consensus       132 ~~VL~IG~G~lp~ta-i~lA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~g~l~~~i~f~~~D~~~~~~~l~~fD~V~~aa  210 (286)
                      +||+.||+|.+|... ..|++   .|.+|+.++++++..+..    ...+ ......... -..+.......+|+||++.
T Consensus         1 MkI~IiGaG~iG~~~a~~L~~---~G~~V~~~~r~~~~~~~~----~~~~-~~~~~~~~~-~~~~~~~~~~~~D~iii~v   71 (167)
T d1ks9a2           1 MKITVLGCGALGQLWLTALCK---QGHEVQGWLRVPQPYCSV----NLVE-TDGSIFNES-LTANDPDFLATSDLLLVTL   71 (167)
T ss_dssp             CEEEEECCSHHHHHHHHHHHH---TTCEEEEECSSCCSEEEE----EEEC-TTSCEEEEE-EEESCHHHHHTCSEEEECS
T ss_pred             CEEEEECcCHHHHHHHHHHHH---CCCceEEEEcCHHHhhhh----cccc-CCccccccc-cccchhhhhcccceEEEee
Confidence            589999999876542 23344   789999999998633211    1122 111111111 1111233345799999763


Q ss_pred             hccCChhHHHHHHHHHHhhccCCcEEEEe
Q 042119          211 LVGMSKEEKLTILGHIRKYMKDGGILLVR  239 (286)
Q Consensus       211 lvg~~~~~k~~vl~~l~~~l~pgg~lv~r  239 (286)
                      - .   .+-..+++.+.+.++++..++.-
T Consensus        72 k-a---~~~~~~~~~l~~~~~~~~~Iv~~   96 (167)
T d1ks9a2          72 K-A---WQVSDAVKSLASTLPVTTPILLI   96 (167)
T ss_dssp             C-G---GGHHHHHHHHHTTSCTTSCEEEE
T ss_pred             c-c---cchHHHHHhhccccCcccEEeec
Confidence            2 2   34567889999999988866653

>d1tt7a2 c.2.1.1 (A:128-294) Hypothetical protein YhfP {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Hypothetical protein YhfP
species: Bacillus subtilis [TaxId: 1423]

Probab=96.16  E-value=0.002  Score=51.89  Aligned_cols=95  Identities=15%  Similarity=0.170  Sum_probs=66.2

Q ss_pred             CCCCEEEEec-cCCChhhHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEcccc-chhhcC--CCcc
Q 042119          129 VQPKKVAFVG-SGPMPLTSIIMAKHHLTSTHFDNFDIDEAANDVARSIVASDAEFEGRMKFLTRDIM-EVKEQL--GEYD  204 (286)
Q Consensus       129 ~~~~~VL~IG-~G~lp~tai~lA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~g~l~~~i~f~~~D~~-~~~~~l--~~fD  204 (286)
                      .++.+||.-| +|..|..++.||+.  .|++|++...+++-.+.+++    +|.  +.+ +...|.. +.....  +.+|
T Consensus        22 ~~~~~VLV~gaaGgVG~~avQlAk~--~Ga~Viat~~s~~k~~~~~~----lGa--d~v-i~~~~~~~~~~~~~~~~gvd   92 (167)
T d1tt7a2          22 PEKGSVLVTGATGGVGGIAVSMLNK--RGYDVVASTGNREAADYLKQ----LGA--SEV-ISREDVYDGTLKALSKQQWQ   92 (167)
T ss_dssp             GGGCCEEEESTTSHHHHHHHHHHHH--HTCCEEEEESSSSTHHHHHH----HTC--SEE-EEHHHHCSSCCCSSCCCCEE
T ss_pred             CCCCEEEEeCCcchHHHHHHHHHHH--cCCceEEEecCHHHHHHHHh----hcc--cce-EeccchhchhhhcccCCCce
Confidence            4566799888 68899999999994  89999999999988877766    462  222 2212211 111111  3699


Q ss_pred             eeehhhhccCChhHHHHHHHHHHhhccCCcEEEEee
Q 042119          205 CIFLAALVGMSKEEKLTILGHIRKYMKDGGILLVRS  240 (286)
Q Consensus       205 ~V~~aalvg~~~~~k~~vl~~l~~~l~pgg~lv~r~  240 (286)
                      +|+..  +|    .  ..++...+.|+|||++++-.
T Consensus        93 ~vid~--vg----g--~~~~~~~~~l~~~G~iv~~G  120 (167)
T d1tt7a2          93 GAVDP--VG----G--KQLASLLSKIQYGGSVAVSG  120 (167)
T ss_dssp             EEEES--CC----T--HHHHHHHTTEEEEEEEEECC
T ss_pred             EEEec--Cc----H--HHHHHHHHHhccCceEEEee
Confidence            98854  32    1  36778999999999998865

>d1pjqa1 c.2.1.11 (A:1-113) Siroheme synthase CysG, domain 1 {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Siroheme synthase N-terminal domain-like
domain: Siroheme synthase CysG, domain 1
species: Salmonella typhimurium [TaxId: 90371]

Probab=96.04  E-value=0.0064  Score=45.21  Aligned_cols=93  Identities=11%  Similarity=0.056  Sum_probs=59.0

Q ss_pred             CCCCEEEEeccCCChhhHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEccccchhhcCCCcceeeh
Q 042119          129 VQPKKVAFVGSGPMPLTSIIMAKHHLTSTHFDNFDIDEAANDVARSIVASDAEFEGRMKFLTRDIMEVKEQLGEYDCIFL  208 (286)
Q Consensus       129 ~~~~~VL~IG~G~lp~tai~lA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~g~l~~~i~f~~~D~~~~~~~l~~fD~V~~  208 (286)
                      -.+++||.||+|..|..-+....  ..|++|+.++.+...-  -+++   ..  ..+++++..+..+  .++.++++|+.
T Consensus        10 l~~k~vlVvG~G~va~~ka~~ll--~~ga~v~v~~~~~~~~--~~~~---~~--~~~i~~~~~~~~~--~dl~~~~lv~~   78 (113)
T d1pjqa1          10 LRDRDCLIVGGGDVAERKARLLL--EAGARLTVNALTFIPQ--FTVW---AN--EGMLTLVEGPFDE--TLLDSCWLAIA   78 (113)
T ss_dssp             CBTCEEEEECCSHHHHHHHHHHH--HTTBEEEEEESSCCHH--HHHH---HT--TTSCEEEESSCCG--GGGTTCSEEEE
T ss_pred             eCCCEEEEECCCHHHHHHHHHHH--HCCCeEEEEeccCChH--HHHH---Hh--cCCceeeccCCCH--HHhCCCcEEee
Confidence            35789999999987765554443  3789999998766431  1111   11  2468888877643  45678999987


Q ss_pred             hhhccCChhHHHHHHHHHHhhccCCcEEEEe
Q 042119          209 AALVGMSKEEKLTILGHIRKYMKDGGILLVR  239 (286)
Q Consensus       209 aalvg~~~~~k~~vl~~l~~~l~pgg~lv~r  239 (286)
                      +..-   .    .+=.++.+..++.|+++-.
T Consensus        79 at~d---~----~~n~~i~~~a~~~~ilVNv  102 (113)
T d1pjqa1          79 ATDD---D----TVNQRVSDAAESRRIFCNV  102 (113)
T ss_dssp             CCSC---H----HHHHHHHHHHHHTTCEEEE
T ss_pred             cCCC---H----HHHHHHHHHHHHcCCEEEe
Confidence            6431   1    2333566666777777643

>d1i4wa_ c.66.1.24 (A:) Transcription factor sc-mtTFB {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: rRNA adenine dimethylase-like
domain: Transcription factor sc-mtTFB
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=95.99  E-value=0.0091  Score=52.80  Aligned_cols=60  Identities=13%  Similarity=0.134  Sum_probs=46.9

Q ss_pred             CCCEEEEeccCCChhhHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEccccch
Q 042119          130 QPKKVAFVGSGPMPLTSIIMAKHHLTSTHFDNFDIDEAANDVARSIVASDAEFEGRMKFLTRDIMEV  196 (286)
Q Consensus       130 ~~~~VL~IG~G~lp~tai~lA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~g~l~~~i~f~~~D~~~~  196 (286)
                      .+..|++||.|++.+|...+.+  ...-+|++||+|+...+.-++...     .++++++.+|+..+
T Consensus        43 ~~~~VlEIGPG~G~LT~~Ll~~--~~~~~v~~iE~D~~~~~~L~~~~~-----~~~~~ii~~D~l~~  102 (322)
T d1i4wa_          43 EELKVLDLYPGVGIQSAIFYNK--YCPRQYSLLEKRSSLYKFLNAKFE-----GSPLQILKRDPYDW  102 (322)
T ss_dssp             TTCEEEEESCTTCHHHHHHHHH--HCCSEEEEECCCHHHHHHHHHHTT-----TSSCEEECSCTTCH
T ss_pred             CCCeEEEECCCCCHHHHHHHhc--CCCCEEEEEECCHHHHHHHHHhcc-----CCCcEEEeCchhhc
Confidence            5678999999998888776654  122489999999999888776632     25799999999754

>d1p3da1 c.5.1.1 (A:11-106) UDP-N-acetylmuramate-alanine ligase MurC {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: MurCD N-terminal domain
superfamily: MurCD N-terminal domain
family: MurCD N-terminal domain
domain: UDP-N-acetylmuramate-alanine ligase MurC
species: Haemophilus influenzae [TaxId: 727]

Probab=95.96  E-value=0.012  Score=42.84  Aligned_cols=73  Identities=14%  Similarity=0.225  Sum_probs=49.0

Q ss_pred             CCCCEEEEeccCCChhhHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEccccchhhcCCCcceeeh
Q 042119          129 VQPKKVAFVGSGPMPLTSIIMAKHHLTSTHFDNFDIDEAANDVARSIVASDAEFEGRMKFLTRDIMEVKEQLGEYDCIFL  208 (286)
Q Consensus       129 ~~~~~VL~IG~G~lp~tai~lA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~g~l~~~i~f~~~D~~~~~~~l~~fD~V~~  208 (286)
                      ...++|-|||.|..|++++...- +..|.+|+|.|....  ...+++ .+.|     +.+..++..+   .+.+.|+|+.
T Consensus         6 ~~~~~ihfiGigG~GMs~LA~~L-~~~G~~VsGSD~~~~--~~~~~L-~~~G-----i~v~~g~~~~---~i~~~d~vV~   73 (96)
T d1p3da1           6 RRVQQIHFIGIGGAGMSGIAEIL-LNEGYQISGSDIADG--VVTQRL-AQAG-----AKIYIGHAEE---HIEGASVVVV   73 (96)
T ss_dssp             TTCCEEEEETTTSTTHHHHHHHH-HHHTCEEEEEESCCS--HHHHHH-HHTT-----CEEEESCCGG---GGTTCSEEEE
T ss_pred             hhCCEEEEEEECHHHHHHHHHHH-HhCCCEEEEEeCCCC--hhhhHH-HHCC-----CeEEECCccc---cCCCCCEEEE
Confidence            56789999999999999852221 137999999998743  223343 3456     4555566533   3457899887


Q ss_pred             hhhcc
Q 042119          209 AALVG  213 (286)
Q Consensus       209 aalvg  213 (286)
                      ...+.
T Consensus        74 S~AI~   78 (96)
T d1p3da1          74 SSAIK   78 (96)
T ss_dssp             CTTSC
T ss_pred             CCCcC
Confidence            77663

>d1u8xx1 c.2.1.5 (X:3-169) Maltose-6'-phosphate glucosidase GlvA {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Maltose-6'-phosphate glucosidase GlvA
species: Bacillus subtilis [TaxId: 1423]

Probab=95.91  E-value=0.026  Score=45.21  Aligned_cols=77  Identities=17%  Similarity=0.288  Sum_probs=47.3

Q ss_pred             CCCEEEEeccCCChhhHHH---HHhh-cCCCcEEEEEeCChHHHHH----HHHHHHhcCCCCCCeEEE-EccccchhhcC
Q 042119          130 QPKKVAFVGSGPMPLTSII---MAKH-HLTSTHFDNFDIDEAANDV----ARSIVASDAEFEGRMKFL-TRDIMEVKEQL  200 (286)
Q Consensus       130 ~~~~VL~IG~G~lp~tai~---lA~~-~~~g~~V~~iDid~~ai~~----Ar~~~~~~g~l~~~i~f~-~~D~~~~~~~l  200 (286)
                      +..+|..||+|..+.+.+.   +++. .+.+.+++-+|+|++.++.    +++.....+ .  ..++. +.|-   ...+
T Consensus         2 k~~KI~iIGaGsv~~~~~~~~ll~~~~~l~~~eivL~Did~~~~~~~~~~~~~~~~~~~-~--~~~~~~~~d~---~eal   75 (167)
T d1u8xx1           2 KSFSIVIAGGGSTFTPGIVLMLLDHLEEFPIRKLKLYDNDKERQDRIAGACDVFIREKA-P--DIEFAATTDP---EEAF   75 (167)
T ss_dssp             CCEEEEEECTTSSSHHHHHHHHHHTTTTSCEEEEEEECSCHHHHHHHHHHHHHHHHHHC-T--TSEEEEESCH---HHHH
T ss_pred             CCceEEEECCChhhhHHHHHHHHhhhhhcCCCEEEEEcCChhHHHHHHHHHHHHHHHhC-C--CcceEecCCh---hhcc
Confidence            3468999999987654222   2221 1234699999999998753    333444455 2  33333 3443   2345


Q ss_pred             CCcceeehhhhc
Q 042119          201 GEYDCIFLAALV  212 (286)
Q Consensus       201 ~~fD~V~~aalv  212 (286)
                      .+.|+|+.++.+
T Consensus        76 ~~AD~Vvitag~   87 (167)
T d1u8xx1          76 TDVDFVMAHIRV   87 (167)
T ss_dssp             SSCSEEEECCCT
T ss_pred             CCCCEEEECCCc
Confidence            688999988765

>d1j6ua1 c.5.1.1 (A:0-88) UDP-N-acetylmuramate-alanine ligase MurC {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: MurCD N-terminal domain
superfamily: MurCD N-terminal domain
family: MurCD N-terminal domain
domain: UDP-N-acetylmuramate-alanine ligase MurC
species: Thermotoga maritima [TaxId: 2336]

Probab=95.89  E-value=0.012  Score=42.52  Aligned_cols=70  Identities=13%  Similarity=0.218  Sum_probs=47.5

Q ss_pred             CEEEEeccCCChhhHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEccccchhhcCCCcceeehhhh
Q 042119          132 KKVAFVGSGPMPLTSIIMAKHHLTSTHFDNFDIDEAANDVARSIVASDAEFEGRMKFLTRDIMEVKEQLGEYDCIFLAAL  211 (286)
Q Consensus       132 ~~VL~IG~G~lp~tai~lA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~g~l~~~i~f~~~D~~~~~~~l~~fD~V~~aal  211 (286)
                      +||-|||-|..||+++...- +..|.+|+|.|+.+..  ..++ +++.|     +++..+.-   ...+.+.|+|+....
T Consensus         2 ~~ihfiGIgG~GMs~LA~~L-~~~G~~VsGSD~~~~~--~t~~-L~~~G-----i~i~~gh~---~~~i~~~d~vV~SsA   69 (89)
T d1j6ua1           2 MKIHFVGIGGIGMSAVALHE-FSNGNDVYGSNIEETE--RTAY-LRKLG-----IPIFVPHS---ADNWYDPDLVIKTPA   69 (89)
T ss_dssp             CEEEEETTTSHHHHHHHHHH-HHTTCEEEEECSSCCH--HHHH-HHHTT-----CCEESSCC---TTSCCCCSEEEECTT
T ss_pred             cEEEEEeECHHHHHHHHHHH-HhCCCeEEEEeCCCCh--hHHH-HHHCC-----CeEEeeec---ccccCCCCEEEEecC
Confidence            68999999999999863221 2489999999999743  2222 67777     34444432   234467899887776


Q ss_pred             cc
Q 042119          212 VG  213 (286)
Q Consensus       212 vg  213 (286)
                      +.
T Consensus        70 I~   71 (89)
T d1j6ua1          70 VR   71 (89)
T ss_dssp             CC
T ss_pred             cC
Confidence            63

>d1o6za1 c.2.1.5 (A:22-162) Malate dehydrogenase {Archaeon Haloarcula marismortui [TaxId: 2238]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Archaeon Haloarcula marismortui [TaxId: 2238]

Probab=95.71  E-value=0.069  Score=41.45  Aligned_cols=104  Identities=17%  Similarity=0.191  Sum_probs=65.4

Q ss_pred             CEEEEec-cCCChhhHHHHHhhcCCCcEEEEEeCCh---HHHHHHHHHHHhcCCCCCCeEEEEccccchhhcCCCcceee
Q 042119          132 KKVAFVG-SGPMPLTSIIMAKHHLTSTHFDNFDIDE---AANDVARSIVASDAEFEGRMKFLTRDIMEVKEQLGEYDCIF  207 (286)
Q Consensus       132 ~~VL~IG-~G~lp~tai~lA~~~~~g~~V~~iDid~---~ai~~Ar~~~~~~g~l~~~i~f~~~D~~~~~~~l~~fD~V~  207 (286)
                      +||..|| +|..|.+............++.-+|++.   .+-..+..+..... +..+++...+|-.    ++.+.|+|+
T Consensus         1 sKV~IiGaaG~VG~~~A~~l~~~~l~~el~L~Di~~~~~~~~g~a~Dl~~~~~-~~~~~~i~~~~~~----~~~~aDiVv   75 (142)
T d1o6za1           1 TKVSVVGAAGTVGAAAGYNIALRDIADEVVFVDIPDKEDDTVGQAADTNHGIA-YDSNTRVRQGGYE----DTAGSDVVV   75 (142)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCCSEEEEECCGGGHHHHHHHHHHHHHHHT-TTCCCEEEECCGG----GGTTCSEEE
T ss_pred             CeEEEECCCCcHHHHHHHHHHhCCCCCEEEEEecCCcccccceeecchhhccc-ccCCceEeeCCHH----HhhhcCEEE
Confidence            4899999 7999988766665333445899999863   23345667666555 4567777776643    446789998


Q ss_pred             hhhhc----cCChhH----HHHHHHHHHhhc---cCCcEEEEee
Q 042119          208 LAALV----GMSKEE----KLTILGHIRKYM---KDGGILLVRS  240 (286)
Q Consensus       208 ~aalv----g~~~~~----k~~vl~~l~~~l---~pgg~lv~r~  240 (286)
                      +.+-.    ||+..+    -.++++++.+.+   .|+|++++-+
T Consensus        76 itaG~~~~~g~~R~dl~~~N~~I~~~i~~~i~~~~p~~i~ivvt  119 (142)
T d1o6za1          76 ITAGIPRQPGQTRIDLAGDNAPIMEDIQSSLDEHNDDYISLTTS  119 (142)
T ss_dssp             ECCCCCCCTTCCHHHHHHHHHHHHHHHHHHHHTTCSCCEEEECC
T ss_pred             EecccccccCCchhhHHHHHHHHHHHHHHHHHhcCCCceEEEec
Confidence            77643    443211    133444444333   5788887764

>d1vpda2 c.2.1.6 (A:3-163) Hydroxyisobutyrate dehydrogenase {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Hydroxyisobutyrate dehydrogenase
species: Salmonella typhimurium [TaxId: 90371]

Probab=95.66  E-value=0.0067  Score=47.85  Aligned_cols=90  Identities=18%  Similarity=0.125  Sum_probs=59.7

Q ss_pred             CEEEEeccCCChhhHHH-HHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEccccchhhcCCCcceeehhh
Q 042119          132 KKVAFVGSGPMPLTSII-MAKHHLTSTHFDNFDIDEAANDVARSIVASDAEFEGRMKFLTRDIMEVKEQLGEYDCIFLAA  210 (286)
Q Consensus       132 ~~VL~IG~G~lp~tai~-lA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~g~l~~~i~f~~~D~~~~~~~l~~fD~V~~aa  210 (286)
                      +||.+||.|.+|..-.. |++   .|.+|+++|++++..+..++    .|     .. .+.+..++.   ...|+|+++-
T Consensus         1 MkIgiIGlG~MG~~~A~~L~~---~G~~V~~~d~~~~~~~~~~~----~~-----~~-~~~~~~e~~---~~~d~ii~~v   64 (161)
T d1vpda2           1 MKVGFIGLGIMGKPMSKNLLK---AGYSLVVSDRNPEAIADVIA----AG-----AE-TASTAKAIA---EQCDVIITML   64 (161)
T ss_dssp             CEEEEECCSTTHHHHHHHHHH---TTCEEEEECSCHHHHHHHHH----TT-----CE-ECSSHHHHH---HHCSEEEECC
T ss_pred             CEEEEEehhHHHHHHHHHHHH---CCCeEEEEeCCcchhHHHHH----hh-----hh-hcccHHHHH---hCCCeEEEEc
Confidence            47999999999876442 444   68999999999998776654    33     11 223333322   3679998763


Q ss_pred             hccCChhHHHHHH---HHHHhhccCCcEEEEee
Q 042119          211 LVGMSKEEKLTIL---GHIRKYMKDGGILLVRS  240 (286)
Q Consensus       211 lvg~~~~~k~~vl---~~l~~~l~pgg~lv~r~  240 (286)
                      .   +.+.-..++   ..+...++||.+++-.+
T Consensus        65 ~---~~~~v~~v~~~~~~~~~~~~~g~iiid~s   94 (161)
T d1vpda2          65 P---NSPHVKEVALGENGIIEGAKPGTVLIDMS   94 (161)
T ss_dssp             S---SHHHHHHHHHSTTCHHHHCCTTCEEEECS
T ss_pred             C---CHHHHHHHHhCCcchhhccCCCCEEEECC
Confidence            2   123444555   45788889998888654

>d2pgda2 c.2.1.6 (A:1-176) 6-phosphogluconate dehydrogenase {Sheep (Ovis orientalis aries) [TaxId: 9940]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: 6-phosphogluconate dehydrogenase
species: Sheep (Ovis orientalis aries) [TaxId: 9940]

Probab=95.60  E-value=0.018  Score=45.81  Aligned_cols=98  Identities=14%  Similarity=0.119  Sum_probs=61.5

Q ss_pred             CEEEEeccCCChhhH-HHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEccccchhhcCCCcceeehhh
Q 042119          132 KKVAFVGSGPMPLTS-IIMAKHHLTSTHFDNFDIDEAANDVARSIVASDAEFEGRMKFLTRDIMEVKEQLGEYDCIFLAA  210 (286)
Q Consensus       132 ~~VL~IG~G~lp~ta-i~lA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~g~l~~~i~f~~~D~~~~~~~l~~fD~V~~aa  210 (286)
                      ..|-+||.|.+|... ..|++   .|.+|+++|++++.++...+.-.+     ..-..-.....++.......|.+++..
T Consensus         3 ~nIg~IGlG~MG~~mA~~L~~---~G~~V~v~dr~~~~~~~l~~~~~~-----~~~~~~a~~~~~~~~~~~~~~~ii~~~   74 (176)
T d2pgda2           3 ADIALIGLAVMGQNLILNMND---HGFVVCAFNRTVSKVDDFLANEAK-----GTKVLGAHSLEEMVSKLKKPRRIILLV   74 (176)
T ss_dssp             BSEEEECCSHHHHHHHHHHHH---TTCCEEEECSSTHHHHHHHHTTTT-----TSSCEECSSHHHHHHHBCSSCEEEECS
T ss_pred             CcEEEEeEhHHHHHHHHHHHH---CCCeEEEEcCCHHHHHHHHHhccc-----cccccchhhhhhhhhhhcccceEEEec
Confidence            579999999888652 22333   689999999999987755443111     111111222333333345678887653


Q ss_pred             hccCChhHHHHHHHHHHhhccCCcEEEEee
Q 042119          211 LVGMSKEEKLTILGHIRKYMKDGGILLVRS  240 (286)
Q Consensus       211 lvg~~~~~k~~vl~~l~~~l~pgg~lv~r~  240 (286)
                      .-   .+.-..+++.+...++||.+++--+
T Consensus        75 ~~---~~~v~~v~~~l~~~~~~g~iiid~s  101 (176)
T d2pgda2          75 KA---GQAVDNFIEKLVPLLDIGDIIIDGG  101 (176)
T ss_dssp             CT---THHHHHHHHHHHHHCCTTCEEEECS
T ss_pred             Cc---hHHHHHHHHHHHhccccCcEEEecC
Confidence            21   2444568889999999998877654

>d2p41a1 c.66.1.25 (A:8-264) An RNA cap (nucleoside-2'-O-)-methyltransferase domain of RNA polymerase NS5 {Dengue virus 2 [TaxId: 11060]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: mRNA cap methylase
domain: An RNA cap (nucleoside-2'-O-)-methyltransferase domain of RNA polymerase NS5
species: Dengue virus 2 [TaxId: 11060]

Probab=95.56  E-value=0.011  Score=50.76  Aligned_cols=110  Identities=9%  Similarity=0.040  Sum_probs=64.0

Q ss_pred             HhcCCCCCCEEEEeccCCChhhHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEccccchhhcCCCc
Q 042119          124 SENGVVQPKKVAFVGSGPMPLTSIIMAKHHLTSTHFDNFDIDEAANDVARSIVASDAEFEGRMKFLTRDIMEVKEQLGEY  203 (286)
Q Consensus       124 ~~~~~~~~~~VL~IG~G~lp~tai~lA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~g~l~~~i~f~~~D~~~~~~~l~~f  203 (286)
                      .++...+..+|+|+||||+|.|-. +|. ..+...|.|+|+=-+--+. -......+  .+-+++...+..... .-..+
T Consensus        60 ~~~~~~~~~~vvDlG~~pGgws~~-~a~-~~~v~~V~g~~iG~d~~e~-P~~~~~~~--~ni~~~~~~~dv~~l-~~~~~  133 (257)
T d2p41a1          60 ERNLVTPEGKVVDLGCGRGGWSYY-CGG-LKNVREVKGLTKGGPGHEE-PIPMSTYG--WNLVRLQSGVDVFFI-PPERC  133 (257)
T ss_dssp             HTTSSCCCEEEEEETCTTSHHHHH-HHT-STTEEEEEEECCCSTTSCC-CCCCCSTT--GGGEEEECSCCTTTS-CCCCC
T ss_pred             HhcCccCCCeEEEecCCCChHHHH-HHh-hcCCCceeEEEecCccccC-Cccccccc--cccccchhhhhHHhc-CCCcC
Confidence            456678888999999999998754 443 2466889999983110000 00011112  123455444431111 12469


Q ss_pred             ceeehhhhc--cC---ChhHHHHHHHHHHhhccCCcEEEEe
Q 042119          204 DCIFLAALV--GM---SKEEKLTILGHIRKYMKDGGILLVR  239 (286)
Q Consensus       204 D~V~~aalv--g~---~~~~k~~vl~~l~~~l~pgg~lv~r  239 (286)
                      |+|+.+..-  +.   +.+.-.++++-+.+.|+|||-+++.
T Consensus       134 D~vlcDm~ess~~~~vd~~Rtl~vLela~~wLk~gg~FvvK  174 (257)
T d2p41a1         134 DTLLCDIGESSPNPTVEAGRTLRVLNLVENWLSNNTQFCVK  174 (257)
T ss_dssp             SEEEECCCCCCSSHHHHHHHHHHHHHHHHHHCCTTCEEEEE
T ss_pred             CEEEeeCCCCCCCchhhhhhHHHHHHHHHHHcccCCEEEEE
Confidence            999876321  10   1122346788888999999999886

>d2ahra2 c.2.1.6 (A:1-152) Pyrroline-5-carboxylate reductase ProC {Streptococcus pyogenes [TaxId: 1314]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Pyrroline-5-carboxylate reductase ProC
species: Streptococcus pyogenes [TaxId: 1314]

Probab=95.44  E-value=0.006  Score=47.88  Aligned_cols=83  Identities=13%  Similarity=0.117  Sum_probs=51.8

Q ss_pred             CEEEEeccCCChhhHHH-HHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEccccchhhcCCCcceeehhh
Q 042119          132 KKVAFVGSGPMPLTSII-MAKHHLTSTHFDNFDIDEAANDVARSIVASDAEFEGRMKFLTRDIMEVKEQLGEYDCIFLAA  210 (286)
Q Consensus       132 ~~VL~IG~G~lp~tai~-lA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~g~l~~~i~f~~~D~~~~~~~l~~fD~V~~aa  210 (286)
                      +||.+||||.+|.+-+. |.   ..+.+++..|.+++..+   ++.++.|.   ++   +.|..++.   +..|+||++.
T Consensus         1 MkIg~IG~G~mG~al~~~l~---~~~~~i~v~~r~~~~~~---~l~~~~g~---~~---~~~~~~~~---~~~dvIilav   65 (152)
T d2ahra2           1 MKIGIIGVGKMASAIIKGLK---QTPHELIISGSSLERSK---EIAEQLAL---PY---AMSHQDLI---DQVDLVILGI   65 (152)
T ss_dssp             CEEEEECCSHHHHHHHHHHT---TSSCEEEEECSSHHHHH---HHHHHHTC---CB---CSSHHHHH---HTCSEEEECS
T ss_pred             CEEEEEeccHHHHHHHHHHH---hCCCeEEEEcChHHhHH---hhccccce---ee---echhhhhh---hccceeeeec
Confidence            48999999998864322 32   35789999999987654   44444562   11   12333322   4689999773


Q ss_pred             hccCChhHHHHHHHHHHhhccCCcEEE
Q 042119          211 LVGMSKEEKLTILGHIRKYMKDGGILL  237 (286)
Q Consensus       211 lvg~~~~~k~~vl~~l~~~l~pgg~lv  237 (286)
                      -    +    +.++++.+.++++..++
T Consensus        66 k----p----~~~~~vl~~l~~~~~ii   84 (152)
T d2ahra2          66 K----P----QLFETVLKPLHFKQPII   84 (152)
T ss_dssp             C----G----GGHHHHHTTSCCCSCEE
T ss_pred             c----h----HhHHHHhhhcccceeEe
Confidence            1    1    24456667778876654

>d1o89a2 c.2.1.1 (A:116-292) Hypothetical protein YhdH {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Hypothetical protein YhdH
species: Escherichia coli [TaxId: 562]

Probab=95.43  E-value=0.021  Score=45.98  Aligned_cols=98  Identities=18%  Similarity=0.274  Sum_probs=64.8

Q ss_pred             hcCCC-CCCEEEEe-ccCCChhhHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEccccchhhcC--
Q 042119          125 ENGVV-QPKKVAFV-GSGPMPLTSIIMAKHHLTSTHFDNFDIDEAANDVARSIVASDAEFEGRMKFLTRDIMEVKEQL--  200 (286)
Q Consensus       125 ~~~~~-~~~~VL~I-G~G~lp~tai~lA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~g~l~~~i~f~~~D~~~~~~~l--  200 (286)
                      +.+.. ++.+||.. |+|..|..++.+||+  .|++|+++..+++..+.+++    +|.  +  .++.-+-.+....+  
T Consensus        25 ~~g~~~~~~~vlV~gasGGVG~~aiQlAk~--~Ga~Via~~~~~~k~~~~~~----lGa--d--~vi~~~~~~~~~~l~~   94 (177)
T d1o89a2          25 DAGVRPQDGEIVVTGASGGVGSTAVALLHK--LGYQVVAVSGRESTHEYLKS----LGA--S--RVLPRDEFAESRPLEK   94 (177)
T ss_dssp             HTTCCGGGCEEEESSTTSHHHHHHHHHHHH--TTCCEEEEESCGGGHHHHHH----HTE--E--EEEEGGGSSSCCSSCC
T ss_pred             HhCCCCCCCcEEEEEccccchHHHHHHHHH--cCCCeEEEecchhHHHHHHh----hcc--c--cccccccHHHHHHHHh
Confidence            34433 34466655 557789999999994  79999999999999877765    452  1  22222222222222  


Q ss_pred             CCcceeehhhhccCChhHHHHHHHHHHhhccCCcEEEEee
Q 042119          201 GEYDCIFLAALVGMSKEEKLTILGHIRKYMKDGGILLVRS  240 (286)
Q Consensus       201 ~~fD~V~~aalvg~~~~~k~~vl~~l~~~l~pgg~lv~r~  240 (286)
                      ..+|.|+ +. |+   .   ..+....+.|+++|+++.-.
T Consensus        95 ~~~~~vv-D~-Vg---g---~~~~~~l~~l~~~Griv~~G  126 (177)
T d1o89a2          95 QVWAGAI-DT-VG---D---KVLAKVLAQMNYGGCVAACG  126 (177)
T ss_dssp             CCEEEEE-ES-SC---H---HHHHHHHHTEEEEEEEEECC
T ss_pred             hcCCeeE-EE-cc---h---HHHHHHHHHhccccceEeec
Confidence            2478876 32 33   1   36788999999999999865

>d2ldxa1 c.2.1.5 (A:1-159) Lactate dehydrogenase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=95.40  E-value=0.078  Score=41.96  Aligned_cols=107  Identities=13%  Similarity=0.135  Sum_probs=67.0

Q ss_pred             CCCEEEEeccCCChhhHHHHHhhcCCCcEEEEEeCChHHH-HHHHHHHHhcCCCCCCeEEEEccccchhhcCCCcceeeh
Q 042119          130 QPKKVAFVGSGPMPLTSIIMAKHHLTSTHFDNFDIDEAAN-DVARSIVASDAEFEGRMKFLTRDIMEVKEQLGEYDCIFL  208 (286)
Q Consensus       130 ~~~~VL~IG~G~lp~tai~lA~~~~~g~~V~~iDid~~ai-~~Ar~~~~~~g~l~~~i~f~~~D~~~~~~~l~~fD~V~~  208 (286)
                      +..||..||+|..|.+..+.........++.-+|++++.. ..|..+-..............+|.    .++.+.|+|++
T Consensus        18 ~~~KI~IIGaG~VG~~~A~~l~~~~l~~elvL~D~~~~~a~g~alDl~~~~~~~~~~~~~~~~d~----~~~~~adivvi   93 (159)
T d2ldxa1          18 SRCKITVVGVGDVGMACAISILLKGLADELALVDADTDKLRGEALDLQHGSLFLSTPKIVFGKDY----NVSANSKLVII   93 (159)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHTTTSCSEEEEECSCHHHHHHHHHHHHHTTTTCSCCEEEEESSG----GGGTTEEEEEE
T ss_pred             CCCeEEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCchhhhccHHHHhCcchhcCCCeEEeccch----hhhccccEEEE
Confidence            3468999999999988777655323345899999997653 455566554432334444444553    34467899887


Q ss_pred             hhhc----cCCh----hHHHHHHHHHHhhc---cCCcEEEEee
Q 042119          209 AALV----GMSK----EEKLTILGHIRKYM---KDGGILLVRS  240 (286)
Q Consensus       209 aalv----g~~~----~~k~~vl~~l~~~l---~pgg~lv~r~  240 (286)
                      .+-.    +++.    ..-.++++.+.+.+   .|+|++++-+
T Consensus        94 tag~~~~~~~~R~dll~~N~~i~~~i~~~i~~~~p~~ivivvt  136 (159)
T d2ldxa1          94 TAGARMVSGQTRLDLLQRNVAIMKAIVPGVIQNSPDCKIIVVT  136 (159)
T ss_dssp             CCSCCCCTTTCSSCTTHHHHHHHHHHTTTHHHHSTTCEEEECS
T ss_pred             ecccccCCCCCHHHHHHHHHHHHHHHHHHHhccCCCeEEEEeC
Confidence            7643    3321    33445666555543   6889888865

>d1wmaa1 c.2.1.2 (A:2-276) Carbonyl reductase/20beta-hydroxysteroid dehydrogenase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Carbonyl reductase/20beta-hydroxysteroid dehydrogenase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.35  E-value=0.049  Score=46.12  Aligned_cols=106  Identities=15%  Similarity=0.128  Sum_probs=73.4

Q ss_pred             CCCEEEEeccCCChhh---HHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEccccchhh--------
Q 042119          130 QPKKVAFVGSGPMPLT---SIIMAKHHLTSTHFDNFDIDEAANDVARSIVASDAEFEGRMKFLTRDIMEVKE--------  198 (286)
Q Consensus       130 ~~~~VL~IG~G~lp~t---ai~lA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~g~l~~~i~f~~~D~~~~~~--------  198 (286)
                      .|+||+.|=.|.-|+.   +..||++  .|++|+..+++++..+.+.+.+++.|   .++.++..|+.+...        
T Consensus         1 ~g~rVAlVTGas~GIG~a~A~~la~~--~g~~Vi~~~r~~~~~~~~~~~l~~~~---~~~~~~~~Dvs~~~sv~~~~~~~   75 (275)
T d1wmaa1           1 SGIHVALVTGGNKGIGLAIVRDLCRL--FSGDVVLTARDVTRGQAAVQQLQAEG---LSPRFHQLDIDDLQSIRALRDFL   75 (275)
T ss_dssp             CCCCEEEESSCSSHHHHHHHHHHHHH--SSSEEEEEESSHHHHHHHHHHHHHTT---CCCEEEECCTTCHHHHHHHHHHH
T ss_pred             CCCeEEEECCCCCHHHHHHHHHHHHh--CCCEEEEEECCHHHHHHHHHHHHhcC---CcEEEEEEecCCHHHHHHHHHHH
Confidence            3789987732334543   3445552  58999999999999999988888877   478999999987432        


Q ss_pred             --cCCCcceeehhhhccCC-------hhH-----------HHHHHHHHHhhccCCcEEEEee
Q 042119          199 --QLGEYDCIFLAALVGMS-------KEE-----------KLTILGHIRKYMKDGGILLVRS  240 (286)
Q Consensus       199 --~l~~fD~V~~aalvg~~-------~~~-----------k~~vl~~l~~~l~pgg~lv~r~  240 (286)
                        ..+..|+++..|-+...       .++           -..+.+.+.+.|+++|.++.-+
T Consensus        76 ~~~~g~iDiLVnNAGi~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~lp~m~~~g~ivnis  137 (275)
T d1wmaa1          76 RKEYGGLDVLVNNAGIAFKVADPTPFHIQAEVTMKTNFFGTRDVCTELLPLIKPQGRVVNVS  137 (275)
T ss_dssp             HHHHSSEEEEEECCCCCCCTTCCSCHHHHHHHHHHHHTHHHHHHHHHHGGGEEEEEEEEEEC
T ss_pred             HHhcCCcEEEEEcCCcCCCCCcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccccc
Confidence              33578988876644211       111           1135677889999999887754

>d1up7a1 c.2.1.5 (A:1-162) 6-phospho-beta-glucosidase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: 6-phospho-beta-glucosidase
species: Thermotoga maritima [TaxId: 2336]

Probab=95.23  E-value=0.086  Score=41.49  Aligned_cols=77  Identities=10%  Similarity=0.166  Sum_probs=49.1

Q ss_pred             CEEEEeccCCChhhHHH--HHhh--cCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEccccchhhcCCCcceee
Q 042119          132 KKVAFVGSGPMPLTSII--MAKH--HLTSTHFDNFDIDEAANDVARSIVASDAEFEGRMKFLTRDIMEVKEQLGEYDCIF  207 (286)
Q Consensus       132 ~~VL~IG~G~lp~tai~--lA~~--~~~g~~V~~iDid~~ai~~Ar~~~~~~g~l~~~i~f~~~D~~~~~~~l~~fD~V~  207 (286)
                      .||..||+|..|.+...  +++.  .+...+++-+|+|++..+.+....++.-....++.. ..|   ...++.+.|+|+
T Consensus         1 mKIaiIGaGs~g~~~~~~~l~~~~~~~~~~el~L~Did~~k~~~~~d~~~~~~~~~~~~~~-t~~---~~~~l~~aDvVV   76 (162)
T d1up7a1           1 MRIAVIGGGSSYTPELVKGLLDISEDVRIDEVIFYDIDEEKQKIVVDFVKRLVKDRFKVLI-SDT---FEGAVVDAKYVI   76 (162)
T ss_dssp             CEEEEETTTCTTHHHHHHHHHHHTTTSCCCEEEEECSCHHHHHHHHHHHHHHHTTSSEEEE-CSS---HHHHHTTCSEEE
T ss_pred             CEEEEECCCHHHHHHHHHHHHhcccccCccEEEEEecCcHHHHHHHHHHHhhhccCceEEE-ecC---cccccCCCCEEE
Confidence            47999999977654443  2221  234689999999999988777766653212233332 222   234456789999


Q ss_pred             hhhhc
Q 042119          208 LAALV  212 (286)
Q Consensus       208 ~aalv  212 (286)
                      +.+.+
T Consensus        77 ita~~   81 (162)
T d1up7a1          77 FQFRP   81 (162)
T ss_dssp             ECCCT
T ss_pred             Eeccc
Confidence            88765

>d2fy8a1 c.2.1.9 (A:116-244) Potassium channel-related protein MthK {Archaeon Methanothermobacter thermautotrophicus [TaxId: 145262]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Potassium channel NAD-binding domain
domain: Potassium channel-related protein MthK
species: Archaeon Methanothermobacter thermautotrophicus [TaxId: 145262]

Probab=95.21  E-value=0.053  Score=40.65  Aligned_cols=92  Identities=9%  Similarity=0.082  Sum_probs=63.4

Q ss_pred             CEEEEeccCCChhhHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEccccchh----hcCCCcceee
Q 042119          132 KKVAFVGSGPMPLTSIIMAKHHLTSTHFDNFDIDEAANDVARSIVASDAEFEGRMKFLTRDIMEVK----EQLGEYDCIF  207 (286)
Q Consensus       132 ~~VL~IG~G~lp~tai~lA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~g~l~~~i~f~~~D~~~~~----~~l~~fD~V~  207 (286)
                      ++|+.+|+|..|   ..+++ .+.+..|+.||.|++..+..+    ..|     +.++.||+.+..    ..+.+.+.++
T Consensus         1 kHivI~G~g~~g---~~l~~-~L~~~~i~vi~~d~~~~~~~~----~~~-----~~~i~Gd~~~~~~L~~a~i~~A~~vi   67 (129)
T d2fy8a1           1 RHVVICGWSEST---LECLR-ELRGSEVFVLAEDENVRKKVL----RSG-----ANFVHGDPTRVSDLEKANVRGARAVI   67 (129)
T ss_dssp             CCEEEESCCHHH---HHHHH-TSCGGGEEEEESCTTHHHHHH----HTT-----CEEEESCTTSHHHHHHTTCTTCSEEE
T ss_pred             CEEEEECCCHHH---HHHHH-HHcCCCCEEEEcchHHHHHHH----hcC-----ccccccccCCHHHHHHhhhhcCcEEE
Confidence            468899998654   34555 367888999999999876553    234     688999987632    1345677777


Q ss_pred             hhhhccCChhHHHHHHHHHHhhccCCcEEEEee
Q 042119          208 LAALVGMSKEEKLTILGHIRKYMKDGGILLVRS  240 (286)
Q Consensus       208 ~aalvg~~~~~k~~vl~~l~~~l~pgg~lv~r~  240 (286)
                      +..-    .....-.+-...|.+.|...++++.
T Consensus        68 ~~~~----~d~~n~~~~~~~r~~~~~~~iia~~   96 (129)
T d2fy8a1          68 VNLE----SDSETIHCILGIRKIDESVRIIAEA   96 (129)
T ss_dssp             ECCS----SHHHHHHHHHHHHHHCSSSCEEEEC
T ss_pred             Eecc----chhhhHHHHHHHHHHCCCceEEEEE
Confidence            5421    2344445666777889999888885

>d1luaa1 c.2.1.7 (A:98-288) Methylene-tetrahydromethanopterin dehydrogenase {Methylobacterium extorquens [TaxId: 408]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Methylene-tetrahydromethanopterin dehydrogenase
species: Methylobacterium extorquens [TaxId: 408]

Probab=95.18  E-value=0.025  Score=45.56  Aligned_cols=79  Identities=15%  Similarity=0.233  Sum_probs=53.5

Q ss_pred             CCCCEEEEecc-CCChhh-HHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEccc---cchhhcCCCc
Q 042119          129 VQPKKVAFVGS-GPMPLT-SIIMAKHHLTSTHFDNFDIDEAANDVARSIVASDAEFEGRMKFLTRDI---MEVKEQLGEY  203 (286)
Q Consensus       129 ~~~~~VL~IG~-G~lp~t-ai~lA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~g~l~~~i~f~~~D~---~~~~~~l~~f  203 (286)
                      -++++|+..|+ |.+|.. +..+++   .|++|+.++++++.++...+.+....    ++.+...|+   .++....++.
T Consensus        21 l~gK~vlItGasgGIG~~ia~~la~---~G~~V~~~~r~~~~~~~~~~~~~~~~----~~~~~~~d~~~~~~~~~~~~~i   93 (191)
T d1luaa1          21 VKGKKAVVLAGTGPVGMRSAALLAG---EGAEVVLCGRKLDKAQAAADSVNKRF----KVNVTAAETADDASRAEAVKGA   93 (191)
T ss_dssp             CTTCEEEEETTTSHHHHHHHHHHHH---TTCEEEEEESSHHHHHHHHHHHHHHH----TCCCEEEECCSHHHHHHHTTTC
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHh---hccchhhcccchHHHHHHHHHHHhcc----chhhhhhhcccHHHHHHHhcCc
Confidence            57899999995 333333 234444   79999999999999988777766543    234444554   4444456789


Q ss_pred             ceeehhhhccC
Q 042119          204 DCIFLAALVGM  214 (286)
Q Consensus       204 D~V~~aalvg~  214 (286)
                      |+|+.++-+++
T Consensus        94 Dilin~Ag~g~  104 (191)
T d1luaa1          94 HFVFTAGAIGL  104 (191)
T ss_dssp             SEEEECCCTTC
T ss_pred             CeeeecCcccc
Confidence            99997765543

>d1onfa2 c.3.1.5 (A:154-270) Glutathione reductase {Plasmodium falciparum [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Plasmodium falciparum [TaxId: 5833]

Probab=95.08  E-value=0.027  Score=42.12  Aligned_cols=50  Identities=24%  Similarity=0.262  Sum_probs=40.5

Q ss_pred             CCCCEEEEeccCCChhhHHHHHhhcCCCcEEEEEeC--------ChHHHHHHHHHHHhcC
Q 042119          129 VQPKKVAFVGSGPMPLTSIIMAKHHLTSTHFDNFDI--------DEAANDVARSIVASDA  180 (286)
Q Consensus       129 ~~~~~VL~IG~G~lp~tai~lA~~~~~g~~V~~iDi--------d~~ai~~Ar~~~~~~g  180 (286)
                      +.|++|+.||+|+.|+-.....+  ..|.+||-++.        |+++.+..++.+++.|
T Consensus        20 ~~p~~v~IiGgG~iG~E~A~~l~--~~g~~Vtlv~~~~~il~~~d~~~~~~~~~~l~~~g   77 (117)
T d1onfa2          20 KESKKIGIVGSGYIAVELINVIK--RLGIDSYIFARGNRILRKFDESVINVLENDMKKNN   77 (117)
T ss_dssp             CCCSEEEEECCSHHHHHHHHHHH--TTTCEEEEECSSSSSCTTSCHHHHHHHHHHHHHTT
T ss_pred             CCCCEEEEECCchHHHHHHHHHH--hccccceeeehhccccccccHHHHHHHHHHHHhCC
Confidence            55899999999987765544444  37999999997        7888899999888877

>d1s6ya1 c.2.1.5 (A:4-172) 6-phospho-beta-glucosidase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: 6-phospho-beta-glucosidase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=95.02  E-value=0.03  Score=44.67  Aligned_cols=75  Identities=20%  Similarity=0.232  Sum_probs=43.5

Q ss_pred             CEEEEeccCCChhhHHH--HHhh--cCCCcEEEEEeCChHH--HHHHH----HHHHhcCCCCCCeEEE-EccccchhhcC
Q 042119          132 KKVAFVGSGPMPLTSII--MAKH--HLTSTHFDNFDIDEAA--NDVAR----SIVASDAEFEGRMKFL-TRDIMEVKEQL  200 (286)
Q Consensus       132 ~~VL~IG~G~lp~tai~--lA~~--~~~g~~V~~iDid~~a--i~~Ar----~~~~~~g~l~~~i~f~-~~D~~~~~~~l  200 (286)
                      .||..||+|..+.+...  +++.  .+...+++-+|++++.  .+...    +.+...+   .++++. +.|   ....+
T Consensus         2 ~KI~iIGaGs~~~~~~~~~l~~~~~~~~~~eI~L~Di~e~~~~~~~~d~~~~~~~~~~~---~~~~~~~~td---~~~al   75 (169)
T d1s6ya1           2 LKIATIGGGSSYTPELVEGLIKRYHELPVGELWLVDIPEGKEKLEIVGALAKRMVEKAG---VPIEIHLTLD---RRRAL   75 (169)
T ss_dssp             EEEEEETTTCTTHHHHHHHHHHTTTTCCEEEEEEECCGGGHHHHHHHHHHHHHHHHHTT---CCCEEEEESC---HHHHH
T ss_pred             cEEEEECCChhhHHHHHHHHHHhccccCCCEEEEEcCCccHHHHHHHHHHHHHHHHhcC---CCceeeecCC---chhhc
Confidence            48999999987754322  2221  1224699999999864  22222    2233344   234443 233   23345


Q ss_pred             CCcceeehhhhc
Q 042119          201 GEYDCIFLAALV  212 (286)
Q Consensus       201 ~~fD~V~~aalv  212 (286)
                      .+.|+|+..+.+
T Consensus        76 ~gaDvVv~ta~~   87 (169)
T d1s6ya1          76 DGADFVTTQFRV   87 (169)
T ss_dssp             TTCSEEEECCCT
T ss_pred             CCCCEEEEcccc
Confidence            688999988765

>d1gesa2 c.3.1.5 (A:147-262) Glutathione reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Escherichia coli [TaxId: 562]

Probab=94.95  E-value=0.024  Score=42.14  Aligned_cols=50  Identities=16%  Similarity=0.281  Sum_probs=40.7

Q ss_pred             CCCCEEEEeccCCChhhHHHHHhhcCCCcEEEEEeC--------ChHHHHHHHHHHHhcC
Q 042119          129 VQPKKVAFVGSGPMPLTSIIMAKHHLTSTHFDNFDI--------DEAANDVARSIVASDA  180 (286)
Q Consensus       129 ~~~~~VL~IG~G~lp~tai~lA~~~~~g~~V~~iDi--------d~~ai~~Ar~~~~~~g  180 (286)
                      .-|+||+.||+|+.|+-.....++  .|.+||-++.        |++..+..++.+++.|
T Consensus        19 ~~p~~vvIiGgG~ig~E~A~~l~~--~G~~Vtlve~~~~~l~~~d~~~~~~~~~~l~~~G   76 (116)
T d1gesa2          19 ALPERVAVVGAGYIGVELGGVING--LGAKTHLFEMFDAPLPSFDPMISETLVEVMNAEG   76 (116)
T ss_dssp             SCCSEEEEECCSHHHHHHHHHHHH--TTCEEEEECSSSSSSTTSCHHHHHHHHHHHHHHS
T ss_pred             hCCCEEEEECCChhhHHHHHHhhc--cccEEEEEeecchhhhhcchhhHHHHHHHHHHCC
Confidence            567999999999888766655553  7899999997        5777888888888888

>d2iida1 c.3.1.2 (A:4-319,A:433-486) L-aminoacid oxidase {Malayan pit viper (Calloselasma rhodostoma) [TaxId: 8717]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: L-aminoacid oxidase
species: Malayan pit viper (Calloselasma rhodostoma) [TaxId: 8717]

Probab=94.92  E-value=0.0057  Score=51.19  Aligned_cols=37  Identities=22%  Similarity=0.363  Sum_probs=30.4

Q ss_pred             CCCCCEEEEeccCCChhhHHHHHhhcCCCcEEEEEeCCh
Q 042119          128 VVQPKKVAFVGSGPMPLTSIIMAKHHLTSTHFDNFDIDE  166 (286)
Q Consensus       128 ~~~~~~VL~IG~G~lp~tai~lA~~~~~g~~V~~iDid~  166 (286)
                      ...|++|+.||+|+.|+++.+..++  .|.+|+.+|.++
T Consensus        27 ~~~pkkV~IIGaG~aGLsaA~~L~~--~G~~V~vlE~~~   63 (370)
T d2iida1          27 TSNPKHVVIVGAGMAGLSAAYVLAG--AGHQVTVLEASE   63 (370)
T ss_dssp             CSSCCEEEEECCBHHHHHHHHHHHH--HTCEEEEECSSS
T ss_pred             CCCCCeEEEECCCHHHHHHHHHHHH--CCCCEEEEeCCC
Confidence            4678999999999999988875553  688999999764

>d1hyea1 c.2.1.5 (A:1-145) MJ0490, lactate/malate dehydrogenase {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: MJ0490, lactate/malate dehydrogenase
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=94.80  E-value=0.15  Score=39.59  Aligned_cols=105  Identities=18%  Similarity=0.261  Sum_probs=59.4

Q ss_pred             CEEEEec-cCCChhhHHHHHhhcCCCcEEEEEeCChHHH---HHHHHHHHhcCCCCCCeEE--EEccccchhhcCCCcce
Q 042119          132 KKVAFVG-SGPMPLTSIIMAKHHLTSTHFDNFDIDEAAN---DVARSIVASDAEFEGRMKF--LTRDIMEVKEQLGEYDC  205 (286)
Q Consensus       132 ~~VL~IG-~G~lp~tai~lA~~~~~g~~V~~iDid~~ai---~~Ar~~~~~~g~l~~~i~f--~~~D~~~~~~~l~~fD~  205 (286)
                      +||..|| +|..|.+...+......-.++.-+|+++...   ..+..+..........++.  ...+-   ..++.+.|+
T Consensus         1 MKV~IiGA~G~VG~~~a~~l~~~~l~~el~L~D~~~~~~~~~g~a~Dl~~~~~~~~~~~~~~~~~~~d---~~~l~~aDv   77 (145)
T d1hyea1           1 MKVTIIGASGRVGSATALLLAKEPFMKDLVLIGREHSINKLEGLREDIYDALAGTRSDANIYVESDEN---LRIIDESDV   77 (145)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHTCTTCCEEEEEECGGGHHHHHHHHHHHHHHHTTSCCCCEEEEEETTC---GGGGTTCSE
T ss_pred             CEEEEECCCChHHHHHHHHHHhCCcccccccccchhhhHhhhcccccchhcccccccCCccccCCcch---HHHhccceE
Confidence            4799999 5999988766655222235899999997542   3455665533212233443  33222   235568999


Q ss_pred             eehhhhc----cCChhH----HHHHHHHHHhhc---cCCcEEEEe
Q 042119          206 IFLAALV----GMSKEE----KLTILGHIRKYM---KDGGILLVR  239 (286)
Q Consensus       206 V~~aalv----g~~~~~----k~~vl~~l~~~l---~pgg~lv~r  239 (286)
                      |++.+..    +++..+    -.++++++.+.+   .|++++++.
T Consensus        78 VVitAG~~~~~g~sR~dl~~~Na~iv~~i~~~i~~~~~~~iivVt  122 (145)
T d1hyea1          78 VIITSGVPRKEGMSRMDLAKTNAKIVGKYAKKIAEICDTKIFVIT  122 (145)
T ss_dssp             EEECCSCCCCTTCCHHHHHHHHHHHHHHHHHHHHHHCCCEEEECS
T ss_pred             EEEecccccCCCCChhhhhhhhHHHHHHHHHHHhccCCCeEEEEc
Confidence            9887643    444221    223334433333   477777653

>d1y6ja1 c.2.1.5 (A:7-148) Lactate dehydrogenase {Clostridium thermocellum [TaxId: 1515]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Clostridium thermocellum [TaxId: 1515]

Probab=94.76  E-value=0.038  Score=42.89  Aligned_cols=104  Identities=21%  Similarity=0.303  Sum_probs=58.3

Q ss_pred             CEEEEeccCCChhhHHHHHhhcCCCcEEEEEeCChHHH-HHHHHHHHhcCCCCCCeEEEEccccchhhcCCCcceeehhh
Q 042119          132 KKVAFVGSGPMPLTSIIMAKHHLTSTHFDNFDIDEAAN-DVARSIVASDAEFEGRMKFLTRDIMEVKEQLGEYDCIFLAA  210 (286)
Q Consensus       132 ~~VL~IG~G~lp~tai~lA~~~~~g~~V~~iDid~~ai-~~Ar~~~~~~g~l~~~i~f~~~D~~~~~~~l~~fD~V~~aa  210 (286)
                      .||..||+|..|.+............+++-+|++++.. ..+..+..... .........+|-    .++.+.|+|++++
T Consensus         2 ~KI~IIGaG~VG~~~a~~l~~~~l~~el~L~D~~~~~~~g~a~Dl~~~~~-~~~~~~~~~~~~----~~~~~adivvita   76 (142)
T d1y6ja1           2 SKVAIIGAGFVGASAAFTMALRQTANELVLIDVFKEKAIGEAMDINHGLP-FMGQMSLYAGDY----SDVKDCDVIVVTA   76 (142)
T ss_dssp             CCEEEECCSHHHHHHHHHHHHTTCSSEEEEECCC---CCHHHHHHTTSCC-CTTCEEEC--CG----GGGTTCSEEEECC
T ss_pred             CeEEEECCCHHHHHHHHHHHhcCCCCEEEEEeccCCccceeeeeeccCcc-cCCCeeEeeCcH----HHhCCCceEEEec
Confidence            48999999988887665544333456899999999753 45555544444 334555555553    3456789998876


Q ss_pred             hc----cCChhH----HHHHHHHHHhh---ccCCcEEEEee
Q 042119          211 LV----GMSKEE----KLTILGHIRKY---MKDGGILLVRS  240 (286)
Q Consensus       211 lv----g~~~~~----k~~vl~~l~~~---l~pgg~lv~r~  240 (286)
                      ..    +++..+    -.+++..+.+.   ..|+|++++-+
T Consensus        77 g~~~~~~~~r~~l~~~N~~i~~~i~~~i~~~~p~ai~ivvt  117 (142)
T d1y6ja1          77 GANRKPGETRLDLAKKNVMIAKEVTQNIMKYYNHGVILVVS  117 (142)
T ss_dssp             CC------CHHHHHHHHHHHHHHHHHHHHHHCCSCEEEECS
T ss_pred             ccccCcCcchhHHhhHHHHHHHHHHHHhhccCCCceEEEec
Confidence            54    222111    12333333332   25788777754

>d1v59a2 c.3.1.5 (A:161-282) Dihydrolipoamide dehydrogenase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=94.74  E-value=0.031  Score=41.95  Aligned_cols=50  Identities=10%  Similarity=0.230  Sum_probs=41.2

Q ss_pred             CCCCEEEEeccCCChhhHHHHHhhcCCCcEEEEEeCCh--------HHHHHHHHHHHhcC
Q 042119          129 VQPKKVAFVGSGPMPLTSIIMAKHHLTSTHFDNFDIDE--------AANDVARSIVASDA  180 (286)
Q Consensus       129 ~~~~~VL~IG~G~lp~tai~lA~~~~~g~~V~~iDid~--------~ai~~Ar~~~~~~g  180 (286)
                      ..|++++.||+|+.|+-...+...  .|.+||-++..+        ++.+..++.+++.|
T Consensus        21 ~~p~~~vIiG~G~ig~E~A~~l~~--lG~~Vtii~~~~~~l~~~d~ei~~~l~~~l~~~G   78 (122)
T d1v59a2          21 EIPKRLTIIGGGIIGLEMGSVYSR--LGSKVTVVEFQPQIGASMDGEVAKATQKFLKKQG   78 (122)
T ss_dssp             SCCSEEEEECCSHHHHHHHHHHHH--TTCEEEEECSSSSSSSSSCHHHHHHHHHHHHHTT
T ss_pred             cCCCeEEEECCCchHHHHHHHHHh--hCcceeEEEeccccchhhhhhhHHHHHHHHHhcc
Confidence            568999999999888765555442  799999998754        89999999999988

>d1t2da1 c.2.1.5 (A:1-150) Lactate dehydrogenase {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Malaria parasite (Plasmodium falciparum) [TaxId: 5833]

Probab=94.70  E-value=0.049  Score=42.73  Aligned_cols=107  Identities=18%  Similarity=0.141  Sum_probs=62.2

Q ss_pred             CCCEEEEeccCCChhhHHHHHhhcCCCcEEEEEeCChHHH-HHHHHHHHhcCCCCCCeEEEEccccchhhcCCCcceeeh
Q 042119          130 QPKKVAFVGSGPMPLTSIIMAKHHLTSTHFDNFDIDEAAN-DVARSIVASDAEFEGRMKFLTRDIMEVKEQLGEYDCIFL  208 (286)
Q Consensus       130 ~~~~VL~IG~G~lp~tai~lA~~~~~g~~V~~iDid~~ai-~~Ar~~~~~~g~l~~~i~f~~~D~~~~~~~l~~fD~V~~  208 (286)
                      |..||..||+|..|.+...++.... =.++.-+|++++.. ..|..+.........+..+...+-   ..++.+.|+|++
T Consensus         2 p~~KI~IIGaG~VG~~~a~~l~~~~-l~el~L~Di~~~~~~g~a~Dl~~~~~~~~~~~~v~~~~~---~~~~~~advvvi   77 (150)
T d1t2da1           2 PKAKIVLVGSGMIGGVMATLIVQKN-LGDVVLFDIVKNMPHGKALDTSHTNVMAYSNCKVSGSNT---YDDLAGADVVIV   77 (150)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHHTT-CCEEEEECSSSSHHHHHHHHHHTHHHHHTCCCCEEEECC---GGGGTTCSEEEE
T ss_pred             CCCeEEEECCCHHHHHHHHHHHhCC-CCeEEEEeccCCcceeeecchhhhccccCCCcEEEeccc---ccccCCCcEEEE
Confidence            4579999999988877655554322 25899999988653 334444322110113444444332   234567899887


Q ss_pred             hhhc----cCC---------hhHHHHHHHHHHhhcc---CCcEEEEee
Q 042119          209 AALV----GMS---------KEEKLTILGHIRKYMK---DGGILLVRS  240 (286)
Q Consensus       209 aalv----g~~---------~~~k~~vl~~l~~~l~---pgg~lv~r~  240 (286)
                      ++-+    |+.         ...-.+++..+.+.++   |++++++-+
T Consensus        78 tag~~~~~g~~~~~~~R~~l~~~N~~iv~~i~~~i~~~~p~aivivvt  125 (150)
T d1t2da1          78 TAGFTKAPGKSDKEWNRDDLLPLNNKIMIEIGGHIKKNCPNAFIIVVT  125 (150)
T ss_dssp             CCSCSSCTTCCSTTCCGGGGHHHHHHHHHHHHHHHHHHCTTSEEEECS
T ss_pred             ecccccCCCCCccccchhHHHHHHHHHHHHHHHHHHhcCCCeEEEEec
Confidence            7653    221         1223445565555444   899887754

>d2uyoa1 c.66.1.57 (A:14-310) Putative methyltransferase ML2640 {Mycobacterium leprae [TaxId: 1769]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: ML2640-like
domain: Putative methyltransferase ML2640
species: Mycobacterium leprae [TaxId: 1769]

Probab=94.68  E-value=0.11  Score=45.20  Aligned_cols=108  Identities=13%  Similarity=0.107  Sum_probs=74.3

Q ss_pred             CCCCEEEEeccCCChhhHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCC-CCCCeEEEEccccc-hhhcC--CCcc
Q 042119          129 VQPKKVAFVGSGPMPLTSIIMAKHHLTSTHFDNFDIDEAANDVARSIVASDAE-FEGRMKFLTRDIME-VKEQL--GEYD  204 (286)
Q Consensus       129 ~~~~~VL~IG~G~lp~tai~lA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~g~-l~~~i~f~~~D~~~-~~~~l--~~fD  204 (286)
                      ...+.|+.+||| +-..+..+..  .++.++.-||. |+.++.-++++.+.|. ...+..++..|..+ ....+  .+||
T Consensus        88 ~g~~qvV~LGaG-lDTr~~Rl~~--~~~~~~~EvD~-p~vi~~K~~~l~~~~~~~~~~~~~v~~Dl~~~~~~~L~~~g~d  163 (297)
T d2uyoa1          88 DGIRQFVILASG-LDSRAYRLDW--PTGTTVYEIDQ-PKVLAYKSTTLAEHGVTPTADRREVPIDLRQDWPPALRSAGFD  163 (297)
T ss_dssp             TTCCEEEEETCT-TCCHHHHSCC--CTTCEEEEEEC-HHHHHHHHHHHHHTTCCCSSEEEEEECCTTSCHHHHHHHTTCC
T ss_pred             hCCCeEEEeCcc-cCChhhhcCC--CcCceEEEcCC-hHHHHHHHHHHHhcCCCCCceEEEecccccchHHHHHHhcCCC
Confidence            446788899999 6666655532  46777777773 8999998999887762 13466778887753 11111  2355


Q ss_pred             ----eeehhhh--ccCChhHHHHHHHHHHhhccCCcEEEEee
Q 042119          205 ----CIFLAAL--VGMSKEEKLTILGHIRKYMKDGGILLVRS  240 (286)
Q Consensus       205 ----~V~~aal--vg~~~~~k~~vl~~l~~~l~pgg~lv~r~  240 (286)
                          .+|++-.  .-++.+.-.++++.+....+||+.|++..
T Consensus       164 ~~~ptl~i~EGvl~YL~~~~~~~ll~~i~~~~~~GS~l~~d~  205 (297)
T d2uyoa1         164 PSARTAWLAEGLLMYLPATAQDGLFTEIGGLSAVGSRIAVET  205 (297)
T ss_dssp             TTSCEEEEECSCGGGSCHHHHHHHHHHHHHTCCTTCEEEEEC
T ss_pred             CCCCEEEEEccccccCCHHHHHHHHHHHHHhCCCCCEEEEEe
Confidence                3444332  24577888899999999999999999864

>d1mlda1 c.2.1.5 (A:1-144) Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=94.66  E-value=0.11  Score=40.32  Aligned_cols=104  Identities=18%  Similarity=0.226  Sum_probs=61.4

Q ss_pred             CEEEEecc-CCChhhHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEccccchhhcCCCcceeehhh
Q 042119          132 KKVAFVGS-GPMPLTSIIMAKHHLTSTHFDNFDIDEAANDVARSIVASDAEFEGRMKFLTRDIMEVKEQLGEYDCIFLAA  210 (286)
Q Consensus       132 ~~VL~IG~-G~lp~tai~lA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~g~l~~~i~f~~~D~~~~~~~l~~fD~V~~aa  210 (286)
                      +||..||+ |..|.+..++......-.+++-+|+++. ...|..+..... . ........ ..+....+++.|+|++.+
T Consensus         1 sKv~IiGA~G~VG~~~A~~l~~~~~~~elvLiDi~~~-~~~a~Dl~~~~~-~-~~~~~~~~-~~~~~~~~~~aDivVita   76 (144)
T d1mlda1           1 AKVAVLGASGGIGQPLSLLLKNSPLVSRLTLYDIAHT-PGVAADLSHIET-R-ATVKGYLG-PEQLPDCLKGCDVVVIPA   76 (144)
T ss_dssp             CEEEEETTTSTTHHHHHHHHHTCTTCSEEEEEESSSH-HHHHHHHTTSSS-S-CEEEEEES-GGGHHHHHTTCSEEEECC
T ss_pred             CeEEEECCCChHHHHHHHHHHhCCccceEEEEecccc-chhhHHHhhhhh-h-cCCCeEEc-CCChHHHhCCCCEEEECC
Confidence            48999995 9999887766653222357999999864 344554432222 1 11222222 122334457899998765


Q ss_pred             hc----cCChh--------HHHHHHHHHHhhccCCcEEEEee
Q 042119          211 LV----GMSKE--------EKLTILGHIRKYMKDGGILLVRS  240 (286)
Q Consensus       211 lv----g~~~~--------~k~~vl~~l~~~l~pgg~lv~r~  240 (286)
                      ..    ||+..        --.++.+.+.++ .|.+++++-+
T Consensus        77 g~~~~~g~sR~~ll~~N~~i~~~i~~~i~~~-~p~~iiivvt  117 (144)
T d1mlda1          77 GVPRKPGMTRDDLFNTNATIVATLTAACAQH-CPDAMICIIS  117 (144)
T ss_dssp             SCCCCTTCCGGGGHHHHHHHHHHHHHHHHHH-CTTSEEEECS
T ss_pred             CcCCCCCCCcchHHHHHHHHHHHHHHHHHhc-CCCeEEEEec
Confidence            43    33321        133566666666 7889888865

>d1ydwa1 c.2.1.3 (A:6-133,A:305-360) Probable oxidoreductase At4g09670 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Probable oxidoreductase At4g09670
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=94.64  E-value=0.088  Score=41.68  Aligned_cols=93  Identities=10%  Similarity=0.158  Sum_probs=56.8

Q ss_pred             CEEEEeccCCChhhHHHHHhhcCCCcEEEEE-eCChHHHHHHHHHHHhcCCCCCCeEEEEccccchhhcCCCcceeehhh
Q 042119          132 KKVAFVGSGPMPLTSIIMAKHHLTSTHFDNF-DIDEAANDVARSIVASDAEFEGRMKFLTRDIMEVKEQLGEYDCIFLAA  210 (286)
Q Consensus       132 ~~VL~IG~G~lp~tai~lA~~~~~g~~V~~i-Did~~ai~~Ar~~~~~~g~l~~~i~f~~~D~~~~~~~l~~fD~V~~aa  210 (286)
                      -||..||||.+|..-+...+ ..++.+++++ |.+++.   +++..++.+ .....++ ..|..++..+ .+.|+|+++.
T Consensus         2 iki~iIG~G~~g~~~~~~l~-~~~~~~i~ai~d~~~~~---~~~~~~~~~-~~~~~~~-~~~~~~ll~~-~~iD~v~I~t   74 (184)
T d1ydwa1           2 IRIGVMGCADIARKVSRAIH-LAPNATISGVASRSLEK---AKAFATANN-YPESTKI-HGSYESLLED-PEIDALYVPL   74 (184)
T ss_dssp             EEEEEESCCTTHHHHHHHHH-HCTTEEEEEEECSSHHH---HHHHHHHTT-CCTTCEE-ESSHHHHHHC-TTCCEEEECC
T ss_pred             eEEEEEcCCHHHHHHHHHHH-hCCCCEEEEEEeCCccc---cccchhccc-cccceee-cCcHHHhhhc-cccceeeecc
Confidence            38999999988765433333 3578999976 898765   445555666 4444444 4676666554 4789998764


Q ss_pred             hccCChhHHHHHHHHHHhhccCCcEEEE
Q 042119          211 LVGMSKEEKLTILGHIRKYMKDGGILLV  238 (286)
Q Consensus       211 lvg~~~~~k~~vl~~l~~~l~pgg~lv~  238 (286)
                      --    ...   ++.+...++.|=-+++
T Consensus        75 p~----~~h---~~~~~~~l~~g~~v~~   95 (184)
T d1ydwa1          75 PT----SLH---VEWAIKAAEKGKHILL   95 (184)
T ss_dssp             CG----GGH---HHHHHHHHTTTCEEEE
T ss_pred             cc----hhh---cchhhhhhhccceeec
Confidence            21    122   2334444555555554

>d3cuma2 c.2.1.6 (A:1-162) Hydroxyisobutyrate dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Hydroxyisobutyrate dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=94.60  E-value=0.037  Score=43.40  Aligned_cols=90  Identities=18%  Similarity=0.213  Sum_probs=56.5

Q ss_pred             CEEEEeccCCChhh-HHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEccccchhhcCCCcceeehhh
Q 042119          132 KKVAFVGSGPMPLT-SIIMAKHHLTSTHFDNFDIDEAANDVARSIVASDAEFEGRMKFLTRDIMEVKEQLGEYDCIFLAA  210 (286)
Q Consensus       132 ~~VL~IG~G~lp~t-ai~lA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~g~l~~~i~f~~~D~~~~~~~l~~fD~V~~aa  210 (286)
                      ++|.+||.|-+|.. +..|++   .|.+|.++|++++..+...+    .|.      ..+.+..   ......|+|+++-
T Consensus         2 ~kIg~IGlG~MG~~iA~~L~~---~g~~v~~~d~~~~~~~~~~~----~~~------~~~~~~~---e~~~~~diii~~v   65 (162)
T d3cuma2           2 KQIAFIGLGHMGAPMATNLLK---AGYLLNVFDLVQSAVDGLVA----AGA------SAARSAR---DAVQGADVVISML   65 (162)
T ss_dssp             CEEEEECCSTTHHHHHHHHHH---TTCEEEEECSSHHHHHHHHH----TTC------EECSSHH---HHHTSCSEEEECC
T ss_pred             CEEEEEEEHHHHHHHHHHHHH---CCCeEEEEECchhhhhhhhh----hhc------cccchhh---hhccccCeeeecc
Confidence            47999999999864 333554   68999999999988765543    341      1223332   2335689888653


Q ss_pred             hccCChhHHHHHHHH---HHhhccCCcEEEEee
Q 042119          211 LVGMSKEEKLTILGH---IRKYMKDGGILLVRS  240 (286)
Q Consensus       211 lvg~~~~~k~~vl~~---l~~~l~pgg~lv~r~  240 (286)
                      ..   ...-..++..   +...++||.+++--+
T Consensus        66 ~~---~~~~~~v~~~~~~~~~~l~~g~iiid~s   95 (162)
T d3cuma2          66 PA---SQHVEGLYLDDDGLLAHIAPGTLVLECS   95 (162)
T ss_dssp             SC---HHHHHHHHHSTTCHHHHSCTTCEEEECS
T ss_pred             cc---hhhHHHHHhccccccccCCCCCEEEECC
Confidence            21   2333345433   677788888777543

>d1pgja2 c.2.1.6 (A:1-178) 6-phosphogluconate dehydrogenase {Trypanosoma brucei [TaxId: 5691]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: 6-phosphogluconate dehydrogenase
species: Trypanosoma brucei [TaxId: 5691]

Probab=94.57  E-value=0.04  Score=43.57  Aligned_cols=101  Identities=17%  Similarity=0.198  Sum_probs=59.8

Q ss_pred             CEEEEeccCCChhhHH-HHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEccccchhhcCCCcceeehhh
Q 042119          132 KKVAFVGSGPMPLTSI-IMAKHHLTSTHFDNFDIDEAANDVARSIVASDAEFEGRMKFLTRDIMEVKEQLGEYDCIFLAA  210 (286)
Q Consensus       132 ~~VL~IG~G~lp~tai-~lA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~g~l~~~i~f~~~D~~~~~~~l~~fD~V~~aa  210 (286)
                      ++|-+||.|.+|..-. .|++   .|.+|+++|++++..+...+.-.... ...... ...+..++...+...+.++...
T Consensus         2 MkIGvIGlG~MG~~ma~~L~~---~G~~V~~~dr~~~~~~~l~~~~~~~~-~~~~~~-~~~~~~~~~~~~~~~~~~~~~~   76 (178)
T d1pgja2           2 MDVGVVGLGVMGANLALNIAE---KGFKVAVFNRTYSKSEEFMKANASAP-FAGNLK-AFETMEAFAASLKKPRKALILV   76 (178)
T ss_dssp             BSEEEECCSHHHHHHHHHHHH---TTCCEEEECSSHHHHHHHHHHTTTST-TGGGEE-ECSCHHHHHHHBCSSCEEEECC
T ss_pred             CEEEEEeehHHHHHHHHHHHH---CCCeEEEEECCHHHHHHHHHcCCccc-cccchh-hhhhhhHHHHhcccceEEEEee
Confidence            5799999998876422 2333   68999999999998766655422222 112222 1222223333344445544332


Q ss_pred             hccCChhHHHHHHHHHHhhccCCcEEEEee
Q 042119          211 LVGMSKEEKLTILGHIRKYMKDGGILLVRS  240 (286)
Q Consensus       211 lvg~~~~~k~~vl~~l~~~l~pgg~lv~r~  240 (286)
                      ..   ...-..++..+...+++|.+++.-+
T Consensus        77 ~~---~~~~~~~~~~~~~~~~~~~iii~~s  103 (178)
T d1pgja2          77 QA---GAATDSTIEQLKKVFEKGDILVDTG  103 (178)
T ss_dssp             CC---SHHHHHHHHHHHHHCCTTCEEEECC
T ss_pred             cC---cchhhhhhhhhhhhccccceecccC
Confidence            21   1344567888999999998887654

>d1xg5a_ c.2.1.2 (A:) Putative dehydrogenase ARPG836 (MGC4172) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Putative dehydrogenase ARPG836 (MGC4172)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.50  E-value=0.15  Score=42.72  Aligned_cols=78  Identities=10%  Similarity=0.046  Sum_probs=57.8

Q ss_pred             CCCEEEEeccCCChhhHHHHHhh-cCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEccccchh----------h
Q 042119          130 QPKKVAFVGSGPMPLTSIIMAKH-HLTSTHFDNFDIDEAANDVARSIVASDAEFEGRMKFLTRDIMEVK----------E  198 (286)
Q Consensus       130 ~~~~VL~IG~G~lp~tai~lA~~-~~~g~~V~~iDid~~ai~~Ar~~~~~~g~l~~~i~f~~~D~~~~~----------~  198 (286)
                      +++.||..|++ -|+..- +|++ +..|++|+..|++++.++.+.+.++..| ...++.++.+|+.+..          .
T Consensus         9 k~Kv~lITGas-~GIG~a-iA~~la~~G~~Vv~~~r~~~~l~~~~~~l~~~~-~~~~~~~~~~Dls~~~~v~~~v~~~~~   85 (257)
T d1xg5a_           9 RDRLALVTGAS-GGIGAA-VARALVQQGLKVVGCARTVGNIEELAAECKSAG-YPGTLIPYRCDLSNEEDILSMFSAIRS   85 (257)
T ss_dssp             TTCEEEEESTT-SHHHHH-HHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTT-CSSEEEEEECCTTCHHHHHHHHHHHHH
T ss_pred             CCCEEEEeCCC-CHHHHH-HHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcC-CCceEEEEEccCCCHHHHHHHHHHHHH
Confidence            47889999987 466533 2322 2379999999999999999888888887 4568899999998632          2


Q ss_pred             cCCCcceeehhh
Q 042119          199 QLGEYDCIFLAA  210 (286)
Q Consensus       199 ~l~~fD~V~~aa  210 (286)
                      .++..|+++..+
T Consensus        86 ~~g~iD~lVnnA   97 (257)
T d1xg5a_          86 QHSGVDICINNA   97 (257)
T ss_dssp             HHCCCSEEEECC
T ss_pred             hcCCCCEEEecc
Confidence            346789877555

>d1guza1 c.2.1.5 (A:1-142) Malate dehydrogenase {Chlorobium vibrioforme [TaxId: 1098]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Chlorobium vibrioforme [TaxId: 1098]

Probab=94.49  E-value=0.076  Score=40.83  Aligned_cols=104  Identities=18%  Similarity=0.200  Sum_probs=58.5

Q ss_pred             CEEEEeccCCChhhHHHHHhhcCCCcEEEEEeCChHHHHHH-HHHHHhcCCCCCCeEEEE-ccccchhhcCCCcceeehh
Q 042119          132 KKVAFVGSGPMPLTSIIMAKHHLTSTHFDNFDIDEAANDVA-RSIVASDAEFEGRMKFLT-RDIMEVKEQLGEYDCIFLA  209 (286)
Q Consensus       132 ~~VL~IG~G~lp~tai~lA~~~~~g~~V~~iDid~~ai~~A-r~~~~~~g~l~~~i~f~~-~D~~~~~~~l~~fD~V~~a  209 (286)
                      .||..||.|..|.+............+++-+|++++..+.- ..+.........+.++.. +|-    .++.+.|+|+++
T Consensus         1 mKI~IIGaG~VG~~la~~l~~~~l~~el~L~Di~~~~~~~~~~d~~~~~~~~~~~~~i~~~~~~----~~~~dadvvvit   76 (142)
T d1guza1           1 MKITVIGAGNVGATTAFRLAEKQLARELVLLDVVEGIPQGKALDMYESGPVGLFDTKVTGSNDY----ADTANSDIVIIT   76 (142)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCCSEEEEECSSSSHHHHHHHHHHTTHHHHTCCCEEEEESCG----GGGTTCSEEEEC
T ss_pred             CEEEEECcCHHHHHHHHHHHhCCCCceEEEeccccccchhhhhhhhcccchhcccceEEecCCH----HHhcCCeEEEEE
Confidence            48999999988887544443223346999999998765433 222111110113455553 442    345678999887


Q ss_pred             hhc----cCChhH--------HHHHHHHHHhhccCCcEEEEee
Q 042119          210 ALV----GMSKEE--------KLTILGHIRKYMKDGGILLVRS  240 (286)
Q Consensus       210 alv----g~~~~~--------k~~vl~~l~~~l~pgg~lv~r~  240 (286)
                      +-+    |++..+        -.++.+.+.+. .|++.+++-+
T Consensus        77 ag~~~~~g~~r~~l~~~N~~i~~~i~~~i~~~-~p~aivivvt  118 (142)
T d1guza1          77 AGLPRKPGMTREDLLMKNAGIVKEVTDNIMKH-SKNPIIIVVS  118 (142)
T ss_dssp             CSCCCCTTCCHHHHHHHHHHHHHHHHHHHHHH-CSSCEEEECC
T ss_pred             EecCCCCCCchHHHHHHHHHHHHHHHHHhhcc-CCCeEEEEec
Confidence            643    232211        12344444444 4888877754

>d1ebda2 c.3.1.5 (A:155-271) Dihydrolipoamide dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=94.46  E-value=0.043  Score=40.49  Aligned_cols=50  Identities=10%  Similarity=0.100  Sum_probs=38.5

Q ss_pred             CCCCEEEEeccCCChhhHHHHHhhcCCCcEEEEEeCCh--------HHHHHHHHHHHhcC
Q 042119          129 VQPKKVAFVGSGPMPLTSIIMAKHHLTSTHFDNFDIDE--------AANDVARSIVASDA  180 (286)
Q Consensus       129 ~~~~~VL~IG~G~lp~tai~lA~~~~~g~~V~~iDid~--------~ai~~Ar~~~~~~g  180 (286)
                      ..|++|+.||+|+.|+-......  ..|.+||-++..+        ++.+...+.+++.|
T Consensus        20 ~~p~~v~IiGgG~ig~E~A~~l~--~~G~~Vtlve~~~~il~~~d~~~~~~l~~~l~~~G   77 (117)
T d1ebda2          20 EVPKSLVVIGGGYIGIELGTAYA--NFGTKVTILEGAGEILSGFEKQMAAIIKKRLKKKG   77 (117)
T ss_dssp             SCCSEEEEECCSHHHHHHHHHHH--HTTCEEEEEESSSSSSTTSCHHHHHHHHHHHHHTT
T ss_pred             hcCCeEEEECCCccceeeeeeec--ccccEEEEEEecceecccccchhHHHHHHHHHhcC
Confidence            66899999999988876555544  3799999999654        46777777777776

>d1dlja2 c.2.1.6 (A:1-196) UDP-glucose dehydrogenase (UDPGDH) {Streptococcus pyogenes [TaxId: 1314]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: UDP-glucose dehydrogenase (UDPGDH)
species: Streptococcus pyogenes [TaxId: 1314]

Probab=94.43  E-value=0.016  Score=46.72  Aligned_cols=39  Identities=23%  Similarity=0.223  Sum_probs=32.3

Q ss_pred             CEEEEeccCCChhhHHHHHhhcCCCcEEEEEeCChHHHHHHH
Q 042119          132 KKVAFVGSGPMPLTSIIMAKHHLTSTHFDNFDIDEAANDVAR  173 (286)
Q Consensus       132 ~~VL~IG~G~lp~tai~lA~~~~~g~~V~~iDid~~ai~~Ar  173 (286)
                      ++|..||.|-+|++...++.   .|.+|+|+|+|++.++.-+
T Consensus         1 MkI~ViGlG~vGl~~a~~~a---~g~~V~g~Din~~~v~~l~   39 (196)
T d1dlja2           1 MKIAVAGSGYVGLSLGVLLS---LQNEVTIVDILPSKVDKIN   39 (196)
T ss_dssp             CEEEEECCSHHHHHHHHHHT---TTSEEEEECSCHHHHHHHH
T ss_pred             CEEEEECCChhHHHHHHHHH---CCCcEEEEECCHHHHHHHh
Confidence            58999999999987665554   5899999999999887655

>d1i0za1 c.2.1.5 (A:1-160) Lactate dehydrogenase {Human (Homo sapiens), heart isoform (H chain) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Human (Homo sapiens), heart isoform (H chain) [TaxId: 9606]

Probab=94.30  E-value=0.25  Score=38.86  Aligned_cols=107  Identities=19%  Similarity=0.206  Sum_probs=63.6

Q ss_pred             CCCCEEEEeccCCChhhHHHHHhhcCCCcEEEEEeCChHHH-HHHHHHHHhcCCCCCCeEEEEccccchhhcCCCcceee
Q 042119          129 VQPKKVAFVGSGPMPLTSIIMAKHHLTSTHFDNFDIDEAAN-DVARSIVASDAEFEGRMKFLTRDIMEVKEQLGEYDCIF  207 (286)
Q Consensus       129 ~~~~~VL~IG~G~lp~tai~lA~~~~~g~~V~~iDid~~ai-~~Ar~~~~~~g~l~~~i~f~~~D~~~~~~~l~~fD~V~  207 (286)
                      .+..||..||+|..|.+..+.......-.++.-+|++++.. ..|..+...............+|-    .++.+.|+|+
T Consensus        18 ~~~~KV~IIGaG~VG~~~A~~l~~~~l~~ElvLiD~~~~~a~g~alDl~h~~~~~~~~~~~~~~d~----~~~~~adiVV   93 (160)
T d1i0za1          18 VPNNKITVVGVGQVGMACAISILGKSLADELALVDVLEDKLKGEMMDLQHGSLFLQTPKIVADKDY----SVTANSKIVV   93 (160)
T ss_dssp             CCSSEEEEECCSHHHHHHHHHHHHTTCCSEEEEECSCHHHHHHHHHHHHHTGGGCCCSEEEECSSG----GGGTTCSEEE
T ss_pred             CCCCeEEEECCCHHHHHHHHHHHhcCCCcEEEEEEeccchhHHHHHHHhccccccCCCeEEeccch----hhcccccEEE
Confidence            34579999999998888766655323345899999997554 455555443321223333333442    3456789888


Q ss_pred             hhhhc----cCChhH----HH----HHHHHHHhhccCCcEEEEee
Q 042119          208 LAALV----GMSKEE----KL----TILGHIRKYMKDGGILLVRS  240 (286)
Q Consensus       208 ~aalv----g~~~~~----k~----~vl~~l~~~l~pgg~lv~r~  240 (286)
                      +.+-.    |++..+    -.    ++...+.+. .|+|++++-+
T Consensus        94 itAg~~~~~g~tR~~l~~~N~~i~~~i~~~i~~~-~p~aiiivvt  137 (160)
T d1i0za1          94 VTAGVRQQEGESRLNLVQRNVNVFKFIIPQIVKY-SPDCIIIVVS  137 (160)
T ss_dssp             ECCSCCCCTTCCGGGGHHHHHHHHHHHHHHHHHH-CTTCEEEECS
T ss_pred             EecCCccccCcchHHHHHHHHHHHHHHHHHHHhc-CCCcEEEEeC
Confidence            76643    333211    22    334455554 6788887765

>d2ar0a1 c.66.1.45 (A:6-529) M.EcoKI {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: N-6 DNA Methylase-like
domain: M.EcoKI
species: Escherichia coli [TaxId: 562]

Probab=94.14  E-value=0.046  Score=51.04  Aligned_cols=115  Identities=13%  Similarity=0.103  Sum_probs=71.6

Q ss_pred             CCCCCCEEEEeccCCChhhHHHHHhhc---CC--------------CcEEEEEeCChHHHHHHHHHHHhcCCCCCC----
Q 042119          127 GVVQPKKVAFVGSGPMPLTSIIMAKHH---LT--------------STHFDNFDIDEAANDVARSIVASDAEFEGR----  185 (286)
Q Consensus       127 ~~~~~~~VL~IG~G~lp~tai~lA~~~---~~--------------g~~V~~iDid~~ai~~Ar~~~~~~g~l~~~----  185 (286)
                      .+.++.+|+|-.||++++-.... ++.   ..              ...+.|+|+++.+...|+-.+--.| ....    
T Consensus       161 ~~~~~~~i~DPacGsG~fL~~a~-~~l~~~~~~~~~~~~~~~~~~~~~~~~G~E~~~~~~~la~~nl~l~~-~~~~i~~~  238 (524)
T d2ar0a1         161 KPQPREVVQDPAAGTAGFLIEAD-RYVKSQTNDLDDLDGDTQDFQIHRAFIGLELVPGTRRLALMNCLLHD-IEGNLDHG  238 (524)
T ss_dssp             CCCTTCCEEETTCTTTHHHHHHH-HHHHTTTTTTTTSCHHHHHHHHHTSEEEEESCHHHHHHHHHHHHTTT-CCCBGGGT
T ss_pred             cCccchhhcchhhhcchhhHHHH-HHHHHhcCcccccchhHHHHHHHhhhhhhccCHHHHHHHHHHHHhhc-cccccccc
Confidence            45678899999999988754322 210   00              1258999999999999998776555 2221    


Q ss_pred             eEEEEccccchh-hcCCCcceeehhhhccCC-------------hhHHHHHHHHHHhhccCCcEEEEeecCc
Q 042119          186 MKFLTRDIMEVK-EQLGEYDCIFLAALVGMS-------------KEEKLTILGHIRKYMKDGGILLVRSAKG  243 (286)
Q Consensus       186 i~f~~~D~~~~~-~~l~~fD~V~~aalvg~~-------------~~~k~~vl~~l~~~l~pgg~lv~r~~~g  243 (286)
                      -.+..+|...-. .....||+|+..--.|..             .....-+++++.+.|+|||++.+--++|
T Consensus       239 ~~~~~~~~l~~d~~~~~kfD~Ii~NPPfg~~~~~~~~~~~~~~~~~~~~~Fi~~~l~~Lk~gGr~aiIlP~~  310 (524)
T d2ar0a1         239 GAIRLGNTLGSDGENLPKAHIVATNPPFGSAAGTNITRTFVHPTSNKQLCFMQHIIETLHPGGRAAVVVPDN  310 (524)
T ss_dssp             BSEEESCTTSHHHHTSCCEEEEEECCCCTTCSSCCCCSCCSSCCSCHHHHHHHHHHHHEEEEEEEEEEEEHH
T ss_pred             chhhhhhhhhhcccccccceeEEecCCccccccccchhhhccccccccHHHHHHHHHhccccCcEEEEEehH
Confidence            133444443221 133579998743211110             0112359999999999999987765444

>d1pzga1 c.2.1.5 (A:14-163) Lactate dehydrogenase {Toxoplasma gondii [TaxId: 5811]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Toxoplasma gondii [TaxId: 5811]

Probab=94.09  E-value=0.069  Score=41.86  Aligned_cols=108  Identities=17%  Similarity=0.183  Sum_probs=60.0

Q ss_pred             CCCCEEEEeccCCChhhHHHHHhhcCCCcEEEEEeCChHHH-HHHHHHHHhcCCCCCCeEEE-EccccchhhcCCCccee
Q 042119          129 VQPKKVAFVGSGPMPLTSIIMAKHHLTSTHFDNFDIDEAAN-DVARSIVASDAEFEGRMKFL-TRDIMEVKEQLGEYDCI  206 (286)
Q Consensus       129 ~~~~~VL~IG~G~lp~tai~lA~~~~~g~~V~~iDid~~ai-~~Ar~~~~~~g~l~~~i~f~-~~D~~~~~~~l~~fD~V  206 (286)
                      .+..||..||+|..|.+..++... .+=++++.+|++++.. ..|..+.............. +.|.   ..++.+.|+|
T Consensus         5 ~k~~KI~IIGaG~VG~~lA~~l~~-~~~~el~L~D~~~~~~~g~a~Dl~~~~~~~~~~~~~~~~~~~---~~~~~~adiV   80 (154)
T d1pzga1           5 QRRKKVAMIGSGMIGGTMGYLCAL-RELADVVLYDVVKGMPEGKALDLSHVTSVVDTNVSVRAEYSY---EAALTGADCV   80 (154)
T ss_dssp             SCCCEEEEECCSHHHHHHHHHHHH-HTCCEEEEECSSSSHHHHHHHHHHHHHHHTTCCCCEEEECSH---HHHHTTCSEE
T ss_pred             cCCCcEEEECCCHHHHHHHHHHHh-CCCceEEEEEeccccchhHHHHHhhhccccCCeeEEeccCch---hhhhcCCCeE
Confidence            567899999999988765543332 2235899999998643 33444433211011222222 3332   2344678999


Q ss_pred             ehhhhcc---------CChh----HHHHHHHHHHhhc---cCCcEEEEee
Q 042119          207 FLAALVG---------MSKE----EKLTILGHIRKYM---KDGGILLVRS  240 (286)
Q Consensus       207 ~~aalvg---------~~~~----~k~~vl~~l~~~l---~pgg~lv~r~  240 (286)
                      ++++.++         |+..    .-.+++.++.+.+   .|+|++++-+
T Consensus        81 vitag~~~~~g~~~~~~tR~~l~~~n~~iv~~i~~~i~~~~p~aiviivs  130 (154)
T d1pzga1          81 IVTAGLTKVPGKPDSEWSRNDLLPFNSKIIREIGQNIKKYCPKTFIIVVT  130 (154)
T ss_dssp             EECCSCSSCTTCCGGGCCGGGGHHHHHHHHHHHHHHHHHHCTTCEEEECC
T ss_pred             EEecccccCCCCCCcccchhhhhhhhHHHHHHHHHHHHhcCCCcEEEEeC
Confidence            8876432         1111    1233444444433   5888888765

>d1kyqa1 c.2.1.11 (A:1-150) Bifunctional dehydrogenase/ferrochelatase Met8p, N-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Siroheme synthase N-terminal domain-like
domain: Bifunctional dehydrogenase/ferrochelatase Met8p, N-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=94.05  E-value=0.076  Score=40.85  Aligned_cols=45  Identities=16%  Similarity=0.259  Sum_probs=34.0

Q ss_pred             CCCCEEEEeccCCChhhHHHHHhhcCCCcEEEEE--eCChHHHHHHHHH
Q 042119          129 VQPKKVAFVGSGPMPLTSIIMAKHHLTSTHFDNF--DIDEAANDVARSI  175 (286)
Q Consensus       129 ~~~~~VL~IG~G~lp~tai~lA~~~~~g~~V~~i--Did~~ai~~Ar~~  175 (286)
                      -.+++||.||+|+.++.-+....  ..|++||.|  |++++...++.+.
T Consensus        11 l~gkrvLViGgG~va~~ka~~Ll--~~GA~VtVvap~~~~~l~~~~~~~   57 (150)
T d1kyqa1          11 LKDKRILLIGGGEVGLTRLYKLM--PTGCKLTLVSPDLHKSIIPKFGKF   57 (150)
T ss_dssp             CTTCEEEEEEESHHHHHHHHHHG--GGTCEEEEEEEEECTTHHHHHCGG
T ss_pred             eCCCEEEEECCCHHHHHHHHHHH--HCCCEEEEEeCCCCHHHHHHHHhc
Confidence            46899999999988776665544  368999999  6678777766553

>d3grsa2 c.3.1.5 (A:166-290) Glutathione reductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.98  E-value=0.051  Score=40.78  Aligned_cols=50  Identities=10%  Similarity=0.090  Sum_probs=39.8

Q ss_pred             CCCCEEEEeccCCChhhHHHHHhhcCCCcEEEEEeC--------ChHHHHHHHHHHHhcC
Q 042119          129 VQPKKVAFVGSGPMPLTSIIMAKHHLTSTHFDNFDI--------DEAANDVARSIVASDA  180 (286)
Q Consensus       129 ~~~~~VL~IG~G~lp~tai~lA~~~~~g~~V~~iDi--------d~~ai~~Ar~~~~~~g  180 (286)
                      ..|++|+.||+|+.|+-.....+  ..|.+||-++.        |++..+..++.+++.|
T Consensus        20 ~~pk~vvIvGgG~iG~E~A~~l~--~~G~~Vtlv~~~~~~l~~~d~~~~~~~~~~l~~~G   77 (125)
T d3grsa2          20 ELPGRSVIVGAGYIAVEMAGILS--ALGSKTSLMIRHDKVLRSFDSMISTNCTEELENAG   77 (125)
T ss_dssp             SCCSEEEEECCSHHHHHHHHHHH--HTTCEEEEECSSSSSCTTSCHHHHHHHHHHHHHTT
T ss_pred             hcCCEEEEEcCCccHHHHHHHHh--cCCcEEEEEeeccccccchhhHHHHHHHHHHHHCC
Confidence            45789999999987776555544  37999999998        5778888888888877

>d1uxja1 c.2.1.5 (A:2-143) Malate dehydrogenase {Chloroflexus aurantiacus [TaxId: 1108]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Chloroflexus aurantiacus [TaxId: 1108]

Probab=93.94  E-value=0.046  Score=42.31  Aligned_cols=103  Identities=15%  Similarity=0.169  Sum_probs=57.3

Q ss_pred             CEEEEeccCCChhhHHHHHhhcCCCcEEEEEeCChHHHHH-HHHHHHhcCCCCCCeEEE-EccccchhhcCCCcceeehh
Q 042119          132 KKVAFVGSGPMPLTSIIMAKHHLTSTHFDNFDIDEAANDV-ARSIVASDAEFEGRMKFL-TRDIMEVKEQLGEYDCIFLA  209 (286)
Q Consensus       132 ~~VL~IG~G~lp~tai~lA~~~~~g~~V~~iDid~~ai~~-Ar~~~~~~g~l~~~i~f~-~~D~~~~~~~l~~fD~V~~a  209 (286)
                      +||..||+|..|.+..++... ..-+.+..+|++++..+- +..+..........+++. +.|-    .++.+.|+|+++
T Consensus         2 ~KI~IIGaG~VG~~~A~~l~~-~~l~dl~l~D~~~~~~~~~~~Dl~~~~~~~~~~~~i~~~~d~----~~~~~advvvit   76 (142)
T d1uxja1           2 KKISIIGAGFVGSTTAHWLAA-KELGDIVLLDIVEGVPQGKALDLYEASPIEGFDVRVTGTNNY----ADTANSDVIVVT   76 (142)
T ss_dssp             CEEEEECCSHHHHHHHHHHHH-HTCSEEEEECSSSSHHHHHHHHHHTTHHHHTCCCCEEEESCG----GGGTTCSEEEEC
T ss_pred             CeEEEECCCHHHHHHHHHHHh-CCcceEEEEeeccccchhHHHHhhccccccCCCCEEEecCcH----HHhcCCCEEEEe
Confidence            589999999998876544332 233689999999875433 444322211011344444 3453    234578998877


Q ss_pred             hhc----cCCh----hHHH----HHHHHHHhhccCCcEEEEee
Q 042119          210 ALV----GMSK----EEKL----TILGHIRKYMKDGGILLVRS  240 (286)
Q Consensus       210 alv----g~~~----~~k~----~vl~~l~~~l~pgg~lv~r~  240 (286)
                      +-.    +++.    ..-.    ++...+.+. .|+|++++-+
T Consensus        77 ag~~~~~~~~r~dl~~~N~~i~~~i~~~i~k~-~p~aivivvt  118 (142)
T d1uxja1          77 SGAPRKPGMSREDLIKVNADITRACISQAAPL-SPNAVIIMVN  118 (142)
T ss_dssp             CSCC---------CHHHHHHHHHHHHHHHGGG-CTTCEEEECS
T ss_pred             eeccCCcCcchhHHHhHHHHHHHHHHHHHhcc-CCCceEEEeC
Confidence            643    3322    1122    344444443 5688888865

>d1nvmb1 c.2.1.3 (B:1-131,B:287-312) Acetaldehyde dehydrogenase (acylating) {Pseudomonas sp. [TaxId: 306]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Acetaldehyde dehydrogenase (acylating)
species: Pseudomonas sp. [TaxId: 306]

Probab=93.78  E-value=0.048  Score=43.07  Aligned_cols=117  Identities=17%  Similarity=0.203  Sum_probs=62.4

Q ss_pred             CCCEEEEeccCCChhhHH-HHHhhcCCCcEEEEE-eCChHHHHHHHHHHHhcCCCCCCeEEEEccccchhh--cCCCcce
Q 042119          130 QPKKVAFVGSGPMPLTSI-IMAKHHLTSTHFDNF-DIDEAANDVARSIVASDAEFEGRMKFLTRDIMEVKE--QLGEYDC  205 (286)
Q Consensus       130 ~~~~VL~IG~G~lp~tai-~lA~~~~~g~~V~~i-Did~~ai~~Ar~~~~~~g~l~~~i~f~~~D~~~~~~--~l~~fD~  205 (286)
                      +.-||..||||.+|...+ .+.+ ..+..+++++ |++++.-.  .+..++.|     +.+......++..  +..+.|+
T Consensus         3 kkirvaIIGaG~ig~~~~~~~l~-~~~~~el~avas~~~~~~~--~~~a~~~~-----i~~~~~~~d~l~~~~~~~~iDi   74 (157)
T d1nvmb1           3 QKLKVAIIGSGNIGTDLMIKVLR-NAKYLEMGAMVGIDAASDG--LARAQRMG-----VTTTYAGVEGLIKLPEFADIDF   74 (157)
T ss_dssp             SCEEEEEECCSHHHHHHHHHHHH-HCSSEEEEEEECSCTTCHH--HHHHHHTT-----CCEESSHHHHHHHSGGGGGEEE
T ss_pred             CCcEEEEEcCcHHHHHHHHHHHh-hCCcceEEEEEecchhccc--hhhhhhcC-----CcccccceeeeeecccccccCE
Confidence            456999999997765433 2333 3688888887 77765221  22333445     3444444444433  2346899


Q ss_pred             eehhhhccCChhHHHHHHHHHHhhccCCcEEEEeecCcceeeecccCCcccccC
Q 042119          206 IFLAALVGMSKEEKLTILGHIRKYMKDGGILLVRSAKGARAFLYPVVVEHDLLD  259 (286)
Q Consensus       206 V~~aalvg~~~~~k~~vl~~l~~~l~pgg~lv~r~~~g~r~~lyp~v~~~~l~g  259 (286)
                      ||++.--|.+. .+.    ...+.++.|-.++--+...--.+.=|.+.++++.+
T Consensus        75 Vf~ATpag~h~-~~~----~~~~aa~~G~~VID~s~a~~vplvVPevN~~~~~~  123 (157)
T d1nvmb1          75 VFDATSASAHV-QNE----ALLRQAKPGIRLIDLTPAAIGPYCVPVVNLEEHLG  123 (157)
T ss_dssp             EEECSCHHHHH-HHH----HHHHHHCTTCEEEECSTTCSSCBCCHHHHTTTTTT
T ss_pred             EEEcCCchhHH-HhH----HHHHHHHcCCEEEEccccccceEEccCcCHHHHhc
Confidence            99863211111 111    22334566666666664322234555555555544

>d1o9ga_ c.66.1.29 (A:) rRNA methyltransferase AviRa {Streptomyces viridochromogenes [TaxId: 1938]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: rRNA methyltransferase AviRa
domain: rRNA methyltransferase AviRa
species: Streptomyces viridochromogenes [TaxId: 1938]

Probab=93.76  E-value=0.022  Score=48.64  Aligned_cols=83  Identities=10%  Similarity=0.039  Sum_probs=59.3

Q ss_pred             cEEEEEeCChHHHHHH---HHHHHhcCCCCCCeEEEEccccchhh-----cCCCcceeehhhh----cc----CChhHHH
Q 042119          157 THFDNFDIDEAANDVA---RSIVASDAEFEGRMKFLTRDIMEVKE-----QLGEYDCIFLAAL----VG----MSKEEKL  220 (286)
Q Consensus       157 ~~V~~iDid~~ai~~A---r~~~~~~g~l~~~i~f~~~D~~~~~~-----~l~~fD~V~~aal----vg----~~~~~k~  220 (286)
                      ..+.|.|+|+.+++.|   +++++..| +++.|++.++|+.+...     .-..+++|+..--    ++    ...+...
T Consensus       115 ~~i~G~D~d~~ai~~A~~~r~n~~~Ag-l~~~i~i~~~d~f~~~~~~~~~~~~~~GlIVtNPPYGERl~~~~~~~~~~~~  193 (249)
T d1o9ga_         115 SERFGKPSYLEAAQAARRLRERLTAEG-GALPCAIRTADVFDPRALSAVLAGSAPDVVLTDLPYGERTHWEGQVPGQPVA  193 (249)
T ss_dssp             HHHHCCHHHHHHHHHHHHHHHHHHHTT-SSCCEEEEECCTTCGGGHHHHHTTCCCSEEEEECCGGGSSSSSSCCCHHHHH
T ss_pred             CCccccccCHHHHHHHHHHHHHHHHcC-CCceeeeeecchhccCcchhccCCCCCCEEEeCCCccccccccccchHHHHH
Confidence            4578999999999999   46899999 89999999999865332     1235677764321    11    1224577


Q ss_pred             HHHHHHHhhccCCcEEEEee
Q 042119          221 TILGHIRKYMKDGGILLVRS  240 (286)
Q Consensus       221 ~vl~~l~~~l~pgg~lv~r~  240 (286)
                      ++...+.+.+....++++.+
T Consensus       194 ~~~~~l~~~~p~~s~~~it~  213 (249)
T d1o9ga_         194 GLLRSLASALPAHAVIAVTD  213 (249)
T ss_dssp             HHHHHHHHHSCTTCEEEEEE
T ss_pred             HHHHHHHccCCCCcEEEEeC
Confidence            88888999887666666653

>d2pv7a2 c.2.1.6 (A:92-243) Prephenate dehydrogenase TyrA {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Prephenate dehydrogenase TyrA
species: Haemophilus influenzae [TaxId: 727]

Probab=93.72  E-value=0.05  Score=41.84  Aligned_cols=77  Identities=14%  Similarity=0.199  Sum_probs=46.9

Q ss_pred             CCEEEEec-cCCChhhHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEccccchhhcCCCcceeehh
Q 042119          131 PKKVAFVG-SGPMPLTSIIMAKHHLTSTHFDNFDIDEAANDVARSIVASDAEFEGRMKFLTRDIMEVKEQLGEYDCIFLA  209 (286)
Q Consensus       131 ~~~VL~IG-~G~lp~tai~lA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~g~l~~~i~f~~~D~~~~~~~l~~fD~V~~a  209 (286)
                      -++|++|| .|.+|.+-...-+  ..|.+|+++|+++......                          .....|.++.+
T Consensus         9 ~~kI~iIGg~G~mG~~la~~L~--~~G~~V~~~d~~~~~~~~~--------------------------~~~~~~~v~~~   60 (152)
T d2pv7a2           9 IHKIVIVGGYGKLGGLFARYLR--ASGYPISILDREDWAVAES--------------------------ILANADVVIVS   60 (152)
T ss_dssp             CCCEEEETTTSHHHHHHHHHHH--TTTCCEEEECTTCGGGHHH--------------------------HHTTCSEEEEC
T ss_pred             CCeEEEEcCCCHHHHHHHHHHH--HcCCCcEecccccccccch--------------------------hhhhccccccc
Confidence            36999999 6877765332222  3789999999987543211                          11234555544


Q ss_pred             hhccCChhHHHHHHHHHHhhccCCcEEEEe
Q 042119          210 ALVGMSKEEKLTILGHIRKYMKDGGILLVR  239 (286)
Q Consensus       210 alvg~~~~~k~~vl~~l~~~l~pgg~lv~r  239 (286)
                      .-+    ..-..++.++...+++|..++--
T Consensus        61 ~~~----~~~~~v~~~~~~~~~~~~iiiD~   86 (152)
T d2pv7a2          61 VPI----NLTLETIERLKPYLTENMLLADL   86 (152)
T ss_dssp             SCG----GGHHHHHHHHGGGCCTTSEEEEC
T ss_pred             cch----hhheeeeecccccccCCceEEEe
Confidence            332    34456777777777777766543

>d1npya1 c.2.1.7 (A:103-269) Shikimate 5-dehydrogenase-like protein HI0607 {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Shikimate 5-dehydrogenase-like protein HI0607
species: Haemophilus influenzae [TaxId: 727]

Probab=93.69  E-value=0.14  Score=40.30  Aligned_cols=78  Identities=14%  Similarity=0.194  Sum_probs=51.3

Q ss_pred             HHHhcCCCCCCEEEEeccCCChhhHHHHHhhcCCCc-EEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEccccchhhcC
Q 042119          122 ILSENGVVQPKKVAFVGSGPMPLTSIIMAKHHLTST-HFDNFDIDEAANDVARSIVASDAEFEGRMKFLTRDIMEVKEQL  200 (286)
Q Consensus       122 ~l~~~~~~~~~~VL~IG~G~lp~tai~lA~~~~~g~-~V~~iDid~~ai~~Ar~~~~~~g~l~~~i~f~~~D~~~~~~~l  200 (286)
                      .|.++...++++|+.+|+|..+-+.+.-.+  ..|+ +|+.+.++++.   ++++.+..+.     .+.  +  .  ...
T Consensus         8 ~l~~~~~~~~~~vlIlGaGGaarai~~aL~--~~g~~~I~I~nR~~~k---a~~L~~~~~~-----~~~--~--~--~~~   71 (167)
T d1npya1           8 LIEKYHLNKNAKVIVHGSGGMAKAVVAAFK--NSGFEKLKIYARNVKT---GQYLAALYGY-----AYI--N--S--LEN   71 (167)
T ss_dssp             HHHHTTCCTTSCEEEECSSTTHHHHHHHHH--HTTCCCEEEECSCHHH---HHHHHHHHTC-----EEE--S--C--CTT
T ss_pred             HHHHcCCCCCCeEEEECCCHHHHHHHHHHH--HCCCCEEEEecccHHH---HHHHHHhhhh-----hhh--h--c--ccc
Confidence            455667778899999999976655444333  2454 79999999864   5566666662     221  1  1  122


Q ss_pred             CCcceeehhhhccCC
Q 042119          201 GEYDCIFLAALVGMS  215 (286)
Q Consensus       201 ~~fD~V~~aalvg~~  215 (286)
                      .++|+|+-+.-+||.
T Consensus        72 ~~~DliINaTpiGm~   86 (167)
T d1npya1          72 QQADILVNVTSIGMK   86 (167)
T ss_dssp             CCCSEEEECSSTTCT
T ss_pred             cchhhheeccccCCc
Confidence            579999977777874

>d1gtea4 c.4.1.1 (A:184-287,A:441-532) Dihydropyrimidine dehydrogenase, domain 2 {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: Dihydropyrimidine dehydrogenase, domain 2
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=93.51  E-value=0.016  Score=45.67  Aligned_cols=37  Identities=19%  Similarity=0.362  Sum_probs=30.2

Q ss_pred             CCCEEEEeccCCChhhHHHHHhhcCCCcE-EEEEeCChHH
Q 042119          130 QPKKVAFVGSGPMPLTSIIMAKHHLTSTH-FDNFDIDEAA  168 (286)
Q Consensus       130 ~~~~VL~IG~G~lp~tai~lA~~~~~g~~-V~~iDid~~a  168 (286)
                      .++||+.||+||.|+++...+++  .|.+ |+.+|.++..
T Consensus         3 ~~~kVaIIGaGpaGl~aA~~l~~--~G~~~V~v~E~~~~~   40 (196)
T d1gtea4           3 YSAKIALLGAGPASISCASFLAR--LGYSDITIFEKQEYV   40 (196)
T ss_dssp             GGCCEEEECCSHHHHHHHHHHHH--TTCCCEEEEESSSSC
T ss_pred             CCCEEEEECChHHHHHHHHHHHH--CCCCeEEEEEecCcc
Confidence            37899999999999988776663  6774 9999988654

>d1gpja2 c.2.1.7 (A:144-302) Glutamyl tRNA-reductase middle domain {Archaeon Methanopyrus kandleri [TaxId: 2320]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Glutamyl tRNA-reductase middle domain
species: Archaeon Methanopyrus kandleri [TaxId: 2320]

Probab=93.43  E-value=0.13  Score=40.41  Aligned_cols=100  Identities=15%  Similarity=0.056  Sum_probs=57.0

Q ss_pred             CCCCCCEEEEeccCCChhhHHHHHhhcCCCc-EEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEccccchhhcCCCcce
Q 042119          127 GVVQPKKVAFVGSGPMPLTSIIMAKHHLTST-HFDNFDIDEAANDVARSIVASDAEFEGRMKFLTRDIMEVKEQLGEYDC  205 (286)
Q Consensus       127 ~~~~~~~VL~IG~G~lp~tai~lA~~~~~g~-~V~~iDid~~ai~~Ar~~~~~~g~l~~~i~f~~~D~~~~~~~l~~fD~  205 (286)
                      +.-.+++||.||.|.+|........  ..|. +++.+-.+.+   .|+++.+.+|.     +.  .+..++...+.+||+
T Consensus        20 ~~l~~~~ilviGaG~~g~~v~~~L~--~~g~~~i~v~nRt~~---ka~~l~~~~~~-----~~--~~~~~~~~~l~~~Di   87 (159)
T d1gpja2          20 GSLHDKTVLVVGAGEMGKTVAKSLV--DRGVRAVLVANRTYE---RAVELARDLGG-----EA--VRFDELVDHLARSDV   87 (159)
T ss_dssp             SCCTTCEEEEESCCHHHHHHHHHHH--HHCCSEEEEECSSHH---HHHHHHHHHTC-----EE--CCGGGHHHHHHTCSE
T ss_pred             CCcccCeEEEECCCHHHHHHHHHHH--hcCCcEEEEEcCcHH---HHHHHHHhhhc-----cc--ccchhHHHHhccCCE
Confidence            3457899999999977654433222  1455 7999999854   34555555662     22  234455556678999


Q ss_pred             eehhhhccCChhHHHHHHHHHHhhccCC-cEEEEe
Q 042119          206 IFLAALVGMSKEEKLTILGHIRKYMKDG-GILLVR  239 (286)
Q Consensus       206 V~~aalvg~~~~~k~~vl~~l~~~l~pg-g~lv~r  239 (286)
                      |+.+.-.+.+.=.+ +.++...+.=+.+ ..+++.
T Consensus        88 vi~atss~~~ii~~-~~i~~~~~~r~~~~~~~iiD  121 (159)
T d1gpja2          88 VVSATAAPHPVIHV-DDVREALRKRDRRSPILIID  121 (159)
T ss_dssp             EEECCSSSSCCBCH-HHHHHHHHHCSSCCCEEEEE
T ss_pred             EEEecCCCCccccH-hhhHHHHHhcccCCCeEEEe
Confidence            99775332222233 3444444332333 345554

>d1zema1 c.2.1.2 (A:3-262) Xylitol dehydrogenase {Gluconobacter oxydans [TaxId: 442]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Xylitol dehydrogenase
species: Gluconobacter oxydans [TaxId: 442]

Probab=93.40  E-value=0.14  Score=42.96  Aligned_cols=74  Identities=20%  Similarity=0.293  Sum_probs=56.1

Q ss_pred             CCCEEEEeccCCChh---hHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEccccchh---------
Q 042119          130 QPKKVAFVGSGPMPL---TSIIMAKHHLTSTHFDNFDIDEAANDVARSIVASDAEFEGRMKFLTRDIMEVK---------  197 (286)
Q Consensus       130 ~~~~VL~IG~G~lp~---tai~lA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~g~l~~~i~f~~~D~~~~~---------  197 (286)
                      .++.++.-|++ .|+   .+..||+   .|++|+.+|++++.++.+.+.++..|   .++.++.+|+.+..         
T Consensus         4 ~gK~alITGas-~GIG~aia~~la~---~Ga~V~~~~r~~~~l~~~~~~~~~~g---~~~~~~~~Dv~~~~~v~~~~~~~   76 (260)
T d1zema1           4 NGKVCLVTGAG-GNIGLATALRLAE---EGTAIALLDMNREALEKAEASVREKG---VEARSYVCDVTSEEAVIGTVDSV   76 (260)
T ss_dssp             TTCEEEEETTT-SHHHHHHHHHHHH---TTCEEEEEESCHHHHHHHHHHHHTTT---SCEEEEECCTTCHHHHHHHHHHH
T ss_pred             CCCEEEEeCCC-CHHHHHHHHHHHH---CCCEEEEEECCHHHHHHHHHHHHhcC---CcEEEEEccCCCHHHHHHHHHHH
Confidence            47888888876 455   3455666   89999999999999999988888777   47899999987632         


Q ss_pred             -hcCCCcceeehhh
Q 042119          198 -EQLGEYDCIFLAA  210 (286)
Q Consensus       198 -~~l~~fD~V~~aa  210 (286)
                       ..++..|+++..+
T Consensus        77 ~~~~g~iDilVnna   90 (260)
T d1zema1          77 VRDFGKIDFLFNNA   90 (260)
T ss_dssp             HHHHSCCCEEEECC
T ss_pred             HHHhCCCCeehhhh
Confidence             1335688776543

>d1seza1 c.3.1.2 (A:13-329,A:442-497) Protoporphyrinogen oxidase {Tobacco (Nicotiana tabacum) [TaxId: 4097]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Protoporphyrinogen oxidase
species: Tobacco (Nicotiana tabacum) [TaxId: 4097]

Probab=93.39  E-value=0.024  Score=45.87  Aligned_cols=34  Identities=24%  Similarity=0.354  Sum_probs=28.5

Q ss_pred             CCEEEEeccCCChhhHHHHHhhcCCCcEEEEEeCCh
Q 042119          131 PKKVAFVGSGPMPLTSIIMAKHHLTSTHFDNFDIDE  166 (286)
Q Consensus       131 ~~~VL~IG~G~lp~tai~lA~~~~~g~~V~~iDid~  166 (286)
                      ++||+.||+|+-|+++...+++  .|.+|+.+|.++
T Consensus         1 ~KkV~IIGaG~aGL~aA~~La~--~G~~V~vlE~~~   34 (373)
T d1seza1           1 AKRVAVIGAGVSGLAAAYKLKI--HGLNVTVFEAEG   34 (373)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHT--TSCEEEEECSSS
T ss_pred             CCEEEEECcCHHHHHHHHHHHh--CCCCEEEEeCCC
Confidence            5899999999999998766653  789999999754

>d1xhla_ c.2.1.2 (A:) Hypothetical protein F25D1.5 {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Hypothetical protein F25D1.5
species: Caenorhabditis elegans [TaxId: 6239]

Probab=93.16  E-value=0.13  Score=43.67  Aligned_cols=77  Identities=17%  Similarity=0.244  Sum_probs=57.7

Q ss_pred             CCCEEEEeccCCChh---hHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEccccchhh--------
Q 042119          130 QPKKVAFVGSGPMPL---TSIIMAKHHLTSTHFDNFDIDEAANDVARSIVASDAEFEGRMKFLTRDIMEVKE--------  198 (286)
Q Consensus       130 ~~~~VL~IG~G~lp~---tai~lA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~g~l~~~i~f~~~D~~~~~~--------  198 (286)
                      .+++++.-|++ .|+   ++..||+   .|++|+..|++++.++.+.+.+.+.|.-..++.++.+|+.+...        
T Consensus         3 ~gK~alITGas-~GIG~aia~~la~---~Ga~V~~~~r~~~~l~~~~~~i~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~   78 (274)
T d1xhla_           3 SGKSVIITGSS-NGIGRSAAVIFAK---EGAQVTITGRNEDRLEETKQQILKAGVPAEKINAVVADVTEASGQDDIINTT   78 (274)
T ss_dssp             TTCEEEETTCS-SHHHHHHHHHHHH---TTCEEEEEESCHHHHHHHHHHHHHTTCCGGGEEEEECCTTSHHHHHHHHHHH
T ss_pred             CCCEEEEeCCC-cHHHHHHHHHHHH---CCCEEEEEECCHHHHHHHHHHHHHcCCCCcceEEEEeeCCCHHHHHHHHHHH
Confidence            47888888886 465   3555666   89999999999999998888888776334589999999876321        


Q ss_pred             --cCCCcceeehhh
Q 042119          199 --QLGEYDCIFLAA  210 (286)
Q Consensus       199 --~l~~fD~V~~aa  210 (286)
                        .++..|+++..+
T Consensus        79 ~~~~G~iDilVnnA   92 (274)
T d1xhla_          79 LAKFGKIDILVNNA   92 (274)
T ss_dssp             HHHHSCCCEEEECC
T ss_pred             HHHcCCceEEEeec
Confidence              335688877654

>d3lada2 c.3.1.5 (A:159-277) Dihydrolipoamide dehydrogenase {Azotobacter vinelandii [TaxId: 354]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Azotobacter vinelandii [TaxId: 354]

Probab=93.04  E-value=0.16  Score=37.59  Aligned_cols=50  Identities=18%  Similarity=0.261  Sum_probs=40.1

Q ss_pred             CCCCEEEEeccCCChhhHHHHHhhcCCCcEEEEEeC--------ChHHHHHHHHHHHhcC
Q 042119          129 VQPKKVAFVGSGPMPLTSIIMAKHHLTSTHFDNFDI--------DEAANDVARSIVASDA  180 (286)
Q Consensus       129 ~~~~~VL~IG~G~lp~tai~lA~~~~~g~~V~~iDi--------d~~ai~~Ar~~~~~~g  180 (286)
                      ..|++++.||+|+.|+-...+.++  .|.+||.+..        |++..+..++.+++.|
T Consensus        20 ~~p~~i~IiG~G~ig~E~A~~l~~--~G~~Vtiv~~~~~ll~~~d~ei~~~l~~~l~~~G   77 (119)
T d3lada2          20 NVPGKLGVIGAGVIGLELGSVWAR--LGAEVTVLEAMDKFLPAVDEQVAKEAQKILTKQG   77 (119)
T ss_dssp             SCCSEEEEECCSHHHHHHHHHHHH--TTCEEEEEESSSSSSTTSCHHHHHHHHHHHHHTT
T ss_pred             cCCCeEEEECCChHHHHHHHHHHH--cCCceEEEEeecccCCcccchhHHHHHHHHHhcC
Confidence            578999999999888765544442  7999999984        6788888888888877

>d1aoga2 c.3.1.5 (A:170-286) Trypanothione reductase {Trypanosoma cruzi [TaxId: 5693]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Trypanothione reductase
species: Trypanosoma cruzi [TaxId: 5693]

Probab=93.03  E-value=0.16  Score=37.27  Aligned_cols=52  Identities=12%  Similarity=0.118  Sum_probs=37.6

Q ss_pred             CCCCEEEEeccCCChhhHHH-HHhhcCCCcEEEEEeC--------ChHHHHHHHHHHHhcC
Q 042119          129 VQPKKVAFVGSGPMPLTSII-MAKHHLTSTHFDNFDI--------DEAANDVARSIVASDA  180 (286)
Q Consensus       129 ~~~~~VL~IG~G~lp~tai~-lA~~~~~g~~V~~iDi--------d~~ai~~Ar~~~~~~g  180 (286)
                      ..|++|+.||+|+.|+-... ++.....+.+||-++.        |+++.+..++.+++.|
T Consensus        18 ~~p~~v~ivGgG~ig~E~A~~l~~l~~~~~~Vtli~~~~~iL~~~d~~~~~~l~~~l~~~G   78 (117)
T d1aoga2          18 EPPRRVLTVGGGFISVEFAGIFNAYKPKDGQVTLCYRGEMILRGFDHTLREELTKQLTANG   78 (117)
T ss_dssp             SCCSEEEEECSSHHHHHHHHHHHHHCCTTCEEEEEESSSSSSTTSCHHHHHHHHHHHHHTT
T ss_pred             hcCCeEEEECCcHHHHHHHHHhhhcccCCcEEEEEeccchhhcccchHHHHHHHHHHHhcC
Confidence            56799999999987765332 2331234678999986        5677788888888877

>d2cmda1 c.2.1.5 (A:1-145) Malate dehydrogenase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Escherichia coli [TaxId: 562]

Probab=93.02  E-value=0.26  Score=38.10  Aligned_cols=104  Identities=16%  Similarity=0.241  Sum_probs=61.5

Q ss_pred             CEEEEec-cCCChhhHHH-HHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEccccchhhcCCCcceeehh
Q 042119          132 KKVAFVG-SGPMPLTSII-MAKHHLTSTHFDNFDIDEAANDVARSIVASDAEFEGRMKFLTRDIMEVKEQLGEYDCIFLA  209 (286)
Q Consensus       132 ~~VL~IG-~G~lp~tai~-lA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~g~l~~~i~f~~~D~~~~~~~l~~fD~V~~a  209 (286)
                      .||..|| +|..|.+..+ ++.+.....++.-+|+++.+-..|..+-...-  .-......+.- + ..++.+-|+|++.
T Consensus         1 MKV~IiGaaG~VG~~~a~~l~~~~~~~~el~L~D~~~~~~g~a~Dl~h~~~--~~~~~~~~~~~-~-~~~~~~aDvvvit   76 (145)
T d2cmda1           1 MKVAVLGAAGGIGQALALLLKTQLPSGSELSLYDIAPVTPGVAVDLSHIPT--AVKIKGFSGED-A-TPALEGADVVLIS   76 (145)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHHSCTTCEEEEECSSTTHHHHHHHHHTSCS--SCEEEEECSSC-C-HHHHTTCSEEEEC
T ss_pred             CEEEEEcCCChHHHHHHHHHHhCCCCCcEEEEecccccchhHHHHHHCCcc--ccCCcEEEcCC-C-ccccCCCCEEEEC
Confidence            4899999 5999976554 44322356789999999877666666544322  22333332221 1 2345678999877


Q ss_pred             hhc----cCChhH--------HHHHHHHHHhhccCCcEEEEee
Q 042119          210 ALV----GMSKEE--------KLTILGHIRKYMKDGGILLVRS  240 (286)
Q Consensus       210 alv----g~~~~~--------k~~vl~~l~~~l~pgg~lv~r~  240 (286)
                      +..    +++..+        -.++.+.+.+. .|++++++-+
T Consensus        77 aG~~~k~g~~R~dl~~~N~~i~~~v~~~i~~~-~p~aivivvt  118 (145)
T d2cmda1          77 AGVRRKPGMDRSDLFNVNAGIVKNLVQQVAKT-CPKACIGIIT  118 (145)
T ss_dssp             CSCCCCTTCCGGGGHHHHHHHHHHHHHHHHHH-CTTSEEEECS
T ss_pred             CCccCCCCcchhhHHHHHHHHHHHHHHHHHhh-CCCcEEEEcc
Confidence            643    332211        23445555554 5788777754

>d1fcda1 c.3.1.5 (A:1-114,A:256-327) Flavocytochrome c sulfide dehydrogenase, FCSD, flavin-binding subunit {Purple phototrophic bacterium (Chromatium vinosum) [TaxId: 1049]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Flavocytochrome c sulfide dehydrogenase, FCSD, flavin-binding subunit
species: Purple phototrophic bacterium (Chromatium vinosum) [TaxId: 1049]

Probab=92.92  E-value=0.035  Score=42.48  Aligned_cols=37  Identities=22%  Similarity=0.156  Sum_probs=30.1

Q ss_pred             CCCEEEEeccCCChhhHHHHHhhcCCCcEEEEEeCCh
Q 042119          130 QPKKVAFVGSGPMPLTSIIMAKHHLTSTHFDNFDIDE  166 (286)
Q Consensus       130 ~~~~VL~IG~G~lp~tai~lA~~~~~g~~V~~iDid~  166 (286)
                      .++||+.||+|+.|+++..-.++..+..+||.||.++
T Consensus         1 ~gkrivIvGgG~~G~e~A~~l~~~~~~~~Vtlie~~~   37 (186)
T d1fcda1           1 AGRKVVVVGGGTGGATAAKYIKLADPSIEVTLIEPNT   37 (186)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHHHCTTSEEEEECSCS
T ss_pred             CCCcEEEECccHHHHHHHHHHHHcCCCCcEEEEECCC
Confidence            3789999999999988765555456778999999886

>d1iy8a_ c.2.1.2 (A:) Levodione reductase {Corynebacterium aquaticum [TaxId: 144185]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Levodione reductase
species: Corynebacterium aquaticum [TaxId: 144185]

Probab=92.70  E-value=0.23  Score=41.63  Aligned_cols=76  Identities=17%  Similarity=0.290  Sum_probs=57.0

Q ss_pred             CCCEEEEeccCCChhh---HHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEccccchhh--------
Q 042119          130 QPKKVAFVGSGPMPLT---SIIMAKHHLTSTHFDNFDIDEAANDVARSIVASDAEFEGRMKFLTRDIMEVKE--------  198 (286)
Q Consensus       130 ~~~~VL~IG~G~lp~t---ai~lA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~g~l~~~i~f~~~D~~~~~~--------  198 (286)
                      .++.++.-|++ -|+.   +..||+   .|++|...|++++.++...+.+...+ ...++.++.+|+.+...        
T Consensus         3 ~gK~alITGas-~GIG~aia~~la~---~Ga~V~i~~r~~~~l~~~~~~~~~~~-~~~~~~~~~~Dvt~~~~v~~~~~~~   77 (258)
T d1iy8a_           3 TDRVVLITGGG-SGLGRATAVRLAA---EGAKLSLVDVSSEGLEASKAAVLETA-PDAEVLTTVADVSDEAQVEAYVTAT   77 (258)
T ss_dssp             TTCEEEEETTT-SHHHHHHHHHHHH---TTCEEEEEESCHHHHHHHHHHHHHHC-TTCCEEEEECCTTSHHHHHHHHHHH
T ss_pred             CCCEEEEeCCC-CHHHHHHHHHHHH---CCCEEEEEECCHHHHHHHHHHHHhhC-CCCeEEEEeccCCCHHHHHHHHHHH
Confidence            46788888886 4654   556666   89999999999999988888777666 45689999999876322        


Q ss_pred             --cCCCcceeehhh
Q 042119          199 --QLGEYDCIFLAA  210 (286)
Q Consensus       199 --~l~~fD~V~~aa  210 (286)
                        .++..|+++..+
T Consensus        78 ~~~~G~iDiLVnnA   91 (258)
T d1iy8a_          78 TERFGRIDGFFNNA   91 (258)
T ss_dssp             HHHHSCCSEEEECC
T ss_pred             HHHhCCCCEEEECC
Confidence              345788877554

>d1lvla2 c.3.1.5 (A:151-265) Dihydrolipoamide dehydrogenase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Pseudomonas putida [TaxId: 303]

Probab=92.64  E-value=0.091  Score=38.60  Aligned_cols=51  Identities=14%  Similarity=0.161  Sum_probs=39.6

Q ss_pred             CCCCCEEEEeccCCChhhHHHHHhhcCCCcEEEEEeC--------ChHHHHHHHHHHHhcC
Q 042119          128 VVQPKKVAFVGSGPMPLTSIIMAKHHLTSTHFDNFDI--------DEAANDVARSIVASDA  180 (286)
Q Consensus       128 ~~~~~~VL~IG~G~lp~tai~lA~~~~~g~~V~~iDi--------d~~ai~~Ar~~~~~~g  180 (286)
                      ...|++++.||+|+.|+-.....++  .|.+||-++.        |+++.+..++.+++.|
T Consensus        18 ~~~p~~vvIiGgG~~G~E~A~~l~~--~g~~Vtlve~~~~il~~~d~~~~~~l~~~l~~~g   76 (115)
T d1lvla2          18 KALPQHLVVVGGGYIGLELGIAYRK--LGAQVSVVEARERILPTYDSELTAPVAESLKKLG   76 (115)
T ss_dssp             SSCCSEEEEECCSHHHHHHHHHHHH--HTCEEEEECSSSSSSTTSCHHHHHHHHHHHHHHT
T ss_pred             ccCCCeEEEECCCHHHHHHHHHHhh--cccceEEEeeeccccccccchhHHHHHHHHHhhc
Confidence            3567999999999888765555442  6899999987        4667778888888877

>d1vi2a1 c.2.1.7 (A:107-288) Putative shikimate dehydrogenase YdiB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Putative shikimate dehydrogenase YdiB
species: Escherichia coli [TaxId: 562]

Probab=92.63  E-value=0.067  Score=42.69  Aligned_cols=86  Identities=15%  Similarity=0.117  Sum_probs=52.8

Q ss_pred             CCCCEEEEeccCCChhhHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEccc---cchhhcCCCcce
Q 042119          129 VQPKKVAFVGSGPMPLTSIIMAKHHLTSTHFDNFDIDEAANDVARSIVASDAEFEGRMKFLTRDI---MEVKEQLGEYDC  205 (286)
Q Consensus       129 ~~~~~VL~IG~G~lp~tai~lA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~g~l~~~i~f~~~D~---~~~~~~l~~fD~  205 (286)
                      ..+++|+.+|||..+-+.+.-.. ......++.++++++..+.+..++++.+ ..-.......+.   .++...+..+|+
T Consensus        16 l~~k~vlIlGaGGaarai~~al~-~~g~~~i~i~nR~~~~~~~~~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~di   93 (182)
T d1vi2a1          16 IKGKTMVLLGAGGASTAIGAQGA-IEGLKEIKLFNRRDEFFDKALAFAQRVN-ENTDCVVTVTDLADQQAFAEALASADI   93 (182)
T ss_dssp             CTTCEEEEECCSHHHHHHHHHHH-HTTCSEEEEEECSSTTHHHHHHHHHHHH-HHSSCEEEEEETTCHHHHHHHHHTCSE
T ss_pred             cCCCEEEEECCcHHHHHHHHHHh-hcCCceEeeeccchHHHHHHHHHHHHHH-hhcCcceEeeecccccchhhhhcccce
Confidence            46789999999955443332222 2334589999999988888777766543 111222323333   223334457999


Q ss_pred             eehhhhccCCh
Q 042119          206 IFLAALVGMSK  216 (286)
Q Consensus       206 V~~aalvg~~~  216 (286)
                      |+-+.-+||..
T Consensus        94 iIN~Tp~G~~~  104 (182)
T d1vi2a1          94 LTNGTKVGMKP  104 (182)
T ss_dssp             EEECSSTTSTT
T ss_pred             eccccCCcccc
Confidence            99776667653

>d1o8ca2 c.2.1.1 (A:116-192) Hypothetical protein YhdH {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Hypothetical protein YhdH
species: Escherichia coli [TaxId: 562]

Probab=92.54  E-value=0.081  Score=36.85  Aligned_cols=47  Identities=13%  Similarity=0.167  Sum_probs=39.6

Q ss_pred             CCCCCCEEEEecc-CCChhhHHHHHhhcCCCcEEEEEeCChHHHHHHHHH
Q 042119          127 GVVQPKKVAFVGS-GPMPLTSIIMAKHHLTSTHFDNFDIDEAANDVARSI  175 (286)
Q Consensus       127 ~~~~~~~VL~IG~-G~lp~tai~lA~~~~~g~~V~~iDid~~ai~~Ar~~  175 (286)
                      ..+++.+||..|. |..|..++.+|+.  .|++|+++-.+++-.++.+++
T Consensus        28 ~~~~~~~vlI~gasGgVG~~aiQlak~--~G~~Vi~~t~s~~k~~~~~~l   75 (77)
T d1o8ca2          28 VRPQDGEIVVTGASGGVGSTAVALLHK--LGYQVVAVSGRESTHEYLKSL   75 (77)
T ss_dssp             CCGGGCEEEESSTTSHHHHHHHHHHHH--TTCCEEEEESCGGGHHHHHHH
T ss_pred             hccCCCcEEEEeCCCcHHHHHHHHHHH--cCCeEEEEECCHHHHHHHHHC
Confidence            4577888998775 7788889999984  799999999999999888774

>d1d7ya2 c.3.1.5 (A:116-236) NADH-dependent ferredoxin reductase, BphA4 {Pseudomonas sp., KKS102 [TaxId: 306]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH-dependent ferredoxin reductase, BphA4
species: Pseudomonas sp., KKS102 [TaxId: 306]

Probab=92.46  E-value=0.25  Score=36.70  Aligned_cols=57  Identities=14%  Similarity=0.193  Sum_probs=38.1

Q ss_pred             CCCCEEEEeccCCChhhHHHHHhhcCCCcEEEEEeCChH---------HHHHHHHHHHhcCCCCCCeEEEEcc
Q 042119          129 VQPKKVAFVGSGPMPLTSIIMAKHHLTSTHFDNFDIDEA---------ANDVARSIVASDAEFEGRMKFLTRD  192 (286)
Q Consensus       129 ~~~~~VL~IG~G~lp~tai~lA~~~~~g~~V~~iDid~~---------ai~~Ar~~~~~~g~l~~~i~f~~~D  192 (286)
                      .++++|+.||+|+.|+-.....+  ..|.+||-++.++.         ..+..++.+++.|     |+++++.
T Consensus        28 ~~~~~vvIIGgG~iG~E~A~~l~--~~g~~Vtli~~~~~~l~~~~~~~~~~~~~~~l~~~G-----V~i~~~~   93 (121)
T d1d7ya2          28 RPQSRLLIVGGGVIGLELAATAR--TAGVHVSLVETQPRLMSRAAPATLADFVARYHAAQG-----VDLRFER   93 (121)
T ss_dssp             CTTCEEEEECCSHHHHHHHHHHH--HTTCEEEEEESSSSTTTTTSCHHHHHHHHHHHHTTT-----CEEEESC
T ss_pred             hcCCeEEEECcchhHHHHHHHhh--cccceEEEEeeccccccccCCHHHHHHHHHHHHHCC-----cEEEeCC
Confidence            56799999999988765444333  27999999987653         3344455555555     5665443

>d1nyta1 c.2.1.7 (A:102-271) Shikimate 5-dehydrogenase AroE {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Shikimate 5-dehydrogenase AroE
species: Escherichia coli [TaxId: 562]

Probab=92.36  E-value=0.19  Score=39.41  Aligned_cols=77  Identities=16%  Similarity=0.159  Sum_probs=46.6

Q ss_pred             CCCCEEEEeccCCChhhHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEccccchhhcCCCcceeeh
Q 042119          129 VQPKKVAFVGSGPMPLTSIIMAKHHLTSTHFDNFDIDEAANDVARSIVASDAEFEGRMKFLTRDIMEVKEQLGEYDCIFL  208 (286)
Q Consensus       129 ~~~~~VL~IG~G~lp~tai~lA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~g~l~~~i~f~~~D~~~~~~~l~~fD~V~~  208 (286)
                      .++++||.+|+|..+-+.+.-..  ..|++|+.+.++++..+   ++.+.... ...++..  +..+  .....+|+|+-
T Consensus        16 ~~~k~vlIlGaGGaarai~~al~--~~g~~i~I~nRt~~ka~---~l~~~~~~-~~~~~~~--~~~~--~~~~~~dliIN   85 (170)
T d1nyta1          16 RPGLRILLIGAGGASRGVLLPLL--SLDCAVTITNRTVSRAE---ELAKLFAH-TGSIQAL--SMDE--LEGHEFDLIIN   85 (170)
T ss_dssp             CTTCEEEEECCSHHHHHHHHHHH--HTTCEEEEECSSHHHHH---HHHHHTGG-GSSEEEC--CSGG--GTTCCCSEEEE
T ss_pred             CCCCEEEEECCcHHHHHHHHHhc--ccceEEEeccchHHHHH---HHHHHHhh-ccccccc--cccc--ccccccceeec
Confidence            67899999999954443333222  35789999999986554   44444331 1234333  2222  12357999998


Q ss_pred             hhhccCC
Q 042119          209 AALVGMS  215 (286)
Q Consensus       209 aalvg~~  215 (286)
                      +.-+||.
T Consensus        86 ~Tp~G~~   92 (170)
T d1nyta1          86 ATSSGIS   92 (170)
T ss_dssp             CCSCGGG
T ss_pred             ccccCcc
Confidence            7767764

>d1vl8a_ c.2.1.2 (A:) Gluconate 5-dehydrogenase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Gluconate 5-dehydrogenase
species: Thermotoga maritima [TaxId: 2336]

Probab=92.34  E-value=0.7  Score=38.29  Aligned_cols=104  Identities=11%  Similarity=0.102  Sum_probs=68.5

Q ss_pred             CCCEEEEeccCCChh---hHHHHHhhcCCCcEEEEEeCChHHHHHHHH-HHHhcCCCCCCeEEEEccccchh--------
Q 042119          130 QPKKVAFVGSGPMPL---TSIIMAKHHLTSTHFDNFDIDEAANDVARS-IVASDAEFEGRMKFLTRDIMEVK--------  197 (286)
Q Consensus       130 ~~~~VL~IG~G~lp~---tai~lA~~~~~g~~V~~iDid~~ai~~Ar~-~~~~~g~l~~~i~f~~~D~~~~~--------  197 (286)
                      +++.++.-|++ .|+   ++..||+   .|++|+..|++++.++...+ +.++.|   .++.++.+|+.+..        
T Consensus         4 ~gK~~lITGas-~GIG~aia~~la~---~Ga~V~i~~r~~~~~~~~~~~l~~~~g---~~~~~~~~Dv~~~~~v~~~~~~   76 (251)
T d1vl8a_           4 RGRVALVTGGS-RGLGFGIAQGLAE---AGCSVVVASRNLEEASEAAQKLTEKYG---VETMAFRCDVSNYEEVKKLLEA   76 (251)
T ss_dssp             TTCEEEEETTT-SHHHHHHHHHHHH---TTCEEEEEESCHHHHHHHHHHHHHHHC---CCEEEEECCTTCHHHHHHHHHH
T ss_pred             CCCEEEEeCCC-CHHHHHHHHHHHH---CCCEEEEEECCHHHHHHHHHHHHHHhC---CcEEEEEccCCCHHHHHHHHHH
Confidence            47889999986 455   3455666   89999999999988766554 455556   57889999987632        


Q ss_pred             --hcCCCcceeehhhhcc-------CChhH-----------HHHHHHHHHhhccC--CcEEEEee
Q 042119          198 --EQLGEYDCIFLAALVG-------MSKEE-----------KLTILGHIRKYMKD--GGILLVRS  240 (286)
Q Consensus       198 --~~l~~fD~V~~aalvg-------~~~~~-----------k~~vl~~l~~~l~p--gg~lv~r~  240 (286)
                        ..++..|+++..+-+.       ++.++           -..+.+.+.+.|+.  +|.++.-+
T Consensus        77 ~~~~~g~iDiLVnnAG~~~~~~~~~~~~e~~~~~~~vNl~~~~~~~~~~~~~m~~~~~G~Ii~i~  141 (251)
T d1vl8a_          77 VKEKFGKLDTVVNAAGINRRHPAEEFPLDEFRQVIEVNLFGTYYVCREAFSLLRESDNPSIINIG  141 (251)
T ss_dssp             HHHHHSCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHTTCSSCEEEEEC
T ss_pred             HHHHcCCCCEEEECCCCCCCCChhhCCHHHHHHHHHhhhhhhhhhhhhhhhcccccccccccccc
Confidence              2345789887655331       12232           23455667788854  45666553

>d1h6va2 c.3.1.5 (A:171-292) Mammalian thioredoxin reductase {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Mammalian thioredoxin reductase
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=92.20  E-value=0.17  Score=37.74  Aligned_cols=56  Identities=13%  Similarity=0.138  Sum_probs=42.1

Q ss_pred             CCCCEEEEeccCCChhhHHHHHhhcCCCcEEEEEeCC-------hHHHHHHHHHHHhcCCCCCCeEEEEc
Q 042119          129 VQPKKVAFVGSGPMPLTSIIMAKHHLTSTHFDNFDID-------EAANDVARSIVASDAEFEGRMKFLTR  191 (286)
Q Consensus       129 ~~~~~VL~IG~G~lp~tai~lA~~~~~g~~V~~iDid-------~~ai~~Ar~~~~~~g~l~~~i~f~~~  191 (286)
                      ..|++++.||+|+.|+-.....++  .|.+||-++.+       +++.+..++.+++.|     |+|+.+
T Consensus        18 ~~P~~vvIIGgG~iG~E~A~~l~~--lG~~Vtii~~~~~l~~~D~~~~~~l~~~l~~~G-----v~i~~~   80 (122)
T d1h6va2          18 YCPGKTLVVGASYVALECAGFLAG--IGLDVTVMVRSILLRGFDQDMANKIGEHMEEHG-----IKFIRQ   80 (122)
T ss_dssp             SCCCSEEEECCSHHHHHHHHHHHH--TTCCEEEEESSSSSTTSCHHHHHHHHHHHHHTT-----EEEEES
T ss_pred             cCCCeEEEECCCccHHHHHHHHhh--cCCeEEEEEechhhccCCHHHHHHHHHHHHHCC-----CEEEEC
Confidence            578999999999887765555543  78999999765       457778888888777     566655

>d1n1ea2 c.2.1.6 (A:9-197) Glycerol-3- phosphate dehydrogenase {Trypanosome (Leishmania mexicana) [TaxId: 5665]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Glycerol-3- phosphate dehydrogenase
species: Trypanosome (Leishmania mexicana) [TaxId: 5665]

Probab=92.16  E-value=0.084  Score=42.63  Aligned_cols=87  Identities=11%  Similarity=0.131  Sum_probs=52.3

Q ss_pred             CEEEEeccCCChhhHHHHHhhcCCCcEEEEEeCChHHHHHHHHH---HHhcCC--CCCCeEEEEccccchhhcCCCccee
Q 042119          132 KKVAFVGSGPMPLTSIIMAKHHLTSTHFDNFDIDEAANDVARSI---VASDAE--FEGRMKFLTRDIMEVKEQLGEYDCI  206 (286)
Q Consensus       132 ~~VL~IG~G~lp~tai~lA~~~~~g~~V~~iDid~~ai~~Ar~~---~~~~g~--l~~~i~f~~~D~~~~~~~l~~fD~V  206 (286)
                      .||+.||+|.+|.+......  ..|.+|+.++++++.++.-.+.   ...++.  +.+++.+ +.|..+   .+.+.|+|
T Consensus         8 ~KI~ViGaG~wGtAlA~~La--~~g~~V~l~~r~~~~~~~i~~~~~n~~yl~~~~l~~~i~~-t~~l~~---a~~~ad~i   81 (189)
T d1n1ea2           8 NKAVVFGSGAFGTALAMVLS--KKCREVCVWHMNEEEVRLVNEKRENVLFLKGVQLASNITF-TSDVEK---AYNGAEII   81 (189)
T ss_dssp             EEEEEECCSHHHHHHHHHHH--TTEEEEEEECSCHHHHHHHHHHTBCTTTSTTCBCCTTEEE-ESCHHH---HHTTCSCE
T ss_pred             ceEEEECCCHHHHHHHHHHH--HcCCeEEEEEecHHHHHHHhhccccccccccccccccccc-chhhhh---ccCCCCEE
Confidence            47999999998876443333  3678999999999887654332   010110  3456654 345433   34567999


Q ss_pred             ehhhhccCChhHHHHHHHHHHh
Q 042119          207 FLAALVGMSKEEKLTILGHIRK  228 (286)
Q Consensus       207 ~~aalvg~~~~~k~~vl~~l~~  228 (286)
                      +++.-    ...-..+++++.+
T Consensus        82 iiavP----s~~~~~~~~~~~~   99 (189)
T d1n1ea2          82 LFVIP----TQFLRGFFEKSGG   99 (189)
T ss_dssp             EECSC----HHHHHHHHHHHCH
T ss_pred             EEcCc----HHHHHHHHHHHHh
Confidence            87632    2333456666654

>d2c07a1 c.2.1.2 (A:54-304) beta-keto acyl carrier protein reductase {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Malaria parasite (Plasmodium falciparum) [TaxId: 5833]

Probab=92.13  E-value=0.38  Score=39.96  Aligned_cols=73  Identities=15%  Similarity=0.119  Sum_probs=53.7

Q ss_pred             CCEEEEeccCCChhh---HHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEccccchh----------
Q 042119          131 PKKVAFVGSGPMPLT---SIIMAKHHLTSTHFDNFDIDEAANDVARSIVASDAEFEGRMKFLTRDIMEVK----------  197 (286)
Q Consensus       131 ~~~VL~IG~G~lp~t---ai~lA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~g~l~~~i~f~~~D~~~~~----------  197 (286)
                      ++.++..|++ .|+.   +..||+   .|++|+.+|++++.++...+.++..|   .++.++.+|+.+..          
T Consensus        10 nKvalITGas-~GIG~a~a~~la~---~Ga~V~~~~r~~~~l~~~~~~l~~~g---~~~~~~~~Dvt~~~~v~~~~~~~~   82 (251)
T d2c07a1          10 NKVALVTGAG-RGIGREIAKMLAK---SVSHVICISRTQKSCDSVVDEIKSFG---YESSGYAGDVSKKEEISEVINKIL   82 (251)
T ss_dssp             SCEEEEESTT-SHHHHHHHHHHTT---TSSEEEEEESSHHHHHHHHHHHHTTT---CCEEEEECCTTCHHHHHHHHHHHH
T ss_pred             CCEEEEeCCC-CHHHHHHHHHHHH---cCCEEEEEECCHHHHHHHHHHHHhcC---CcEEEEEccCCCHHHHHHHHHHHH
Confidence            5667777875 4654   333443   79999999999999998888888777   57899999998632          


Q ss_pred             hcCCCcceeehhh
Q 042119          198 EQLGEYDCIFLAA  210 (286)
Q Consensus       198 ~~l~~fD~V~~aa  210 (286)
                      ..++..|+++..+
T Consensus        83 ~~~g~iDilvnna   95 (251)
T d2c07a1          83 TEHKNVDILVNNA   95 (251)
T ss_dssp             HHCSCCCEEEECC
T ss_pred             HhcCCceeeeecc
Confidence            2446788776554

>d1yb1a_ c.2.1.2 (A:) 17-beta-hydroxysteroid dehydrogenase type XI {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 17-beta-hydroxysteroid dehydrogenase type XI
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.03  E-value=0.73  Score=38.14  Aligned_cols=76  Identities=14%  Similarity=0.191  Sum_probs=56.8

Q ss_pred             CCCEEEEeccCCChhh---HHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEccccchh---------
Q 042119          130 QPKKVAFVGSGPMPLT---SIIMAKHHLTSTHFDNFDIDEAANDVARSIVASDAEFEGRMKFLTRDIMEVK---------  197 (286)
Q Consensus       130 ~~~~VL~IG~G~lp~t---ai~lA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~g~l~~~i~f~~~D~~~~~---------  197 (286)
                      .|+.++.-|++ .|+.   +..||+   .|++|...|++++.++...+.+...|   .++.++..|+.+..         
T Consensus         6 ~Gkv~lITGas-~GIG~~ia~~la~---~G~~V~l~~r~~~~l~~~~~~~~~~~---~~~~~~~~Dvs~~~~v~~~~~~i   78 (244)
T d1yb1a_           6 TGEIVLITGAG-HGIGRLTAYEFAK---LKSKLVLWDINKHGLEETAAKCKGLG---AKVHTFVVDCSNREDIYSSAKKV   78 (244)
T ss_dssp             TTCEEEEETTT-SHHHHHHHHHHHH---TTCEEEEEESCHHHHHHHHHHHHHTT---CCEEEEECCTTCHHHHHHHHHHH
T ss_pred             CCCEEEEeCCC-cHHHHHHHHHHHH---CCCEEEEEECCHHHHHHHHHHHHhcC---CcEEEEEeeCCCHHHHHHHHHHH
Confidence            56788888887 4654   344454   79999999999999988888787776   58999999998743         


Q ss_pred             -hcCCCcceeehhhhc
Q 042119          198 -EQLGEYDCIFLAALV  212 (286)
Q Consensus       198 -~~l~~fD~V~~aalv  212 (286)
                       ..++..|+++..+.+
T Consensus        79 ~~~~g~idilinnag~   94 (244)
T d1yb1a_          79 KAEIGDVSILVNNAGV   94 (244)
T ss_dssp             HHHTCCCSEEEECCCC
T ss_pred             HHHcCCCceeEeeccc
Confidence             245678887765543

>d1g0oa_ c.2.1.2 (A:) 1,3,8-trihydroxynaphtalene reductase (THNR, naphtol reductase) {Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 1,3,8-trihydroxynaphtalene reductase (THNR, naphtol reductase)
species: Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]

Probab=92.03  E-value=1  Score=37.43  Aligned_cols=104  Identities=13%  Similarity=0.200  Sum_probs=69.0

Q ss_pred             CCCEEEEeccCCChh---hHHHHHhhcCCCcEEEEEeCC-hHHHHHHHHHHHhcCCCCCCeEEEEccccchh--------
Q 042119          130 QPKKVAFVGSGPMPL---TSIIMAKHHLTSTHFDNFDID-EAANDVARSIVASDAEFEGRMKFLTRDIMEVK--------  197 (286)
Q Consensus       130 ~~~~VL~IG~G~lp~---tai~lA~~~~~g~~V~~iDid-~~ai~~Ar~~~~~~g~l~~~i~f~~~D~~~~~--------  197 (286)
                      .+++++.-|++ .|+   .+..|++   .|++|+..|++ ++.++...+.+++.|   .++.++++|+.+..        
T Consensus        17 ~gK~~lITGas-~GIG~aia~~la~---~Ga~Vvi~~~~~~~~~~~~~~~~~~~g---~~~~~~~~D~~~~~~v~~~~~~   89 (272)
T d1g0oa_          17 EGKVALVTGAG-RGIGREMAMELGR---RGCKVIVNYANSTESAEEVVAAIKKNG---SDAACVKANVGVVEDIVRMFEE   89 (272)
T ss_dssp             TTCEEEETTTT-SHHHHHHHHHHHH---TTCEEEEEESSCHHHHHHHHHHHHHTT---CCEEEEECCTTCHHHHHHHHHH
T ss_pred             CCCEEEEeCCC-CHHHHHHHHHHHH---cCCEEEEEeCCchHHHHHHHHHHHhhC---CceeeEeCCCCCHHHHHHHHHH
Confidence            46888888875 465   4455665   79999999987 566666677777777   57999999998632        


Q ss_pred             --hcCCCcceeehhhhc-------cCChhH-----------HHHHHHHHHhhccCCcEEEEee
Q 042119          198 --EQLGEYDCIFLAALV-------GMSKEE-----------KLTILGHIRKYMKDGGILLVRS  240 (286)
Q Consensus       198 --~~l~~fD~V~~aalv-------g~~~~~-----------k~~vl~~l~~~l~pgg~lv~r~  240 (286)
                        ..++..|+++..+-.       ..+.++           -..+.+.+.+.|+.+|.+++-+
T Consensus        90 ~~~~~g~idilV~nag~~~~~~~~~~~~~~~~~~~~~nl~~~~~~~~~~~~~m~~~g~~i~i~  152 (272)
T d1g0oa_          90 AVKIFGKLDIVCSNSGVVSFGHVKDVTPEEFDRVFTINTRGQFFVAREAYKHLEIGGRLILMG  152 (272)
T ss_dssp             HHHHHSCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHSCTTCEEEEEC
T ss_pred             HHHHhCCCCccccccccchhhhhhhhhhhHHHHHhhhccceeeeecccccccccccccccccc
Confidence              233567876544422       112222           2334677888888888766654

>d1ojua1 c.2.1.5 (A:22-163) Malate dehydrogenase {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=91.84  E-value=0.36  Score=37.00  Aligned_cols=105  Identities=24%  Similarity=0.280  Sum_probs=60.5

Q ss_pred             CEEEEeccCCChhhHHHHHhhcCCCcEEEEEeCChHHH-HHHHHHHHhcCCCCCCeEEEE-ccccchhhcCCCcceeehh
Q 042119          132 KKVAFVGSGPMPLTSIIMAKHHLTSTHFDNFDIDEAAN-DVARSIVASDAEFEGRMKFLT-RDIMEVKEQLGEYDCIFLA  209 (286)
Q Consensus       132 ~~VL~IG~G~lp~tai~lA~~~~~g~~V~~iDid~~ai-~~Ar~~~~~~g~l~~~i~f~~-~D~~~~~~~l~~fD~V~~a  209 (286)
                      +||..||+|-.|.+..........-.+++-+|++++.. ..|..+-+....+....++.. +|.    .++.+.|+|++.
T Consensus         1 MKI~IIGaG~VG~~~a~~l~~~~~~~elvL~Di~~~~~~g~alDl~~~~~~~~~~~~i~~~~d~----~~~~~adiVvit   76 (142)
T d1ojua1           1 MKLGFVGAGRVGSTSAFTCLLNLDVDEIALVDIAEDLAVGEAMDLAHAAAGIDKYPKIVGGADY----SLLKGSEIIVVT   76 (142)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHSCCSEEEEECSSHHHHHHHHHHHHHHHHTTTCCCEEEEESCG----GGGTTCSEEEEC
T ss_pred             CEEEEECcCHHHHHHHHHHHhcCcCceEEEEecccchhhHHHHHHhhhccccCCCCccccCCCH----HHhccccEEEEe
Confidence            48999999988877655443222335799999998774 334444443321234445444 343    355678999877


Q ss_pred             hhc----cCChh----HHHHHHHHHHhhc---cCCcEEEEee
Q 042119          210 ALV----GMSKE----EKLTILGHIRKYM---KDGGILLVRS  240 (286)
Q Consensus       210 alv----g~~~~----~k~~vl~~l~~~l---~pgg~lv~r~  240 (286)
                      +..    |++..    .-..++..+.+.+   .|.+++++-+
T Consensus        77 ag~~~~~g~~r~~l~~~n~~i~~~i~~~i~~~~p~aivivvt  118 (142)
T d1ojua1          77 AGLARKPGMTRLDLAHKNAGIIKDIAKKIVENAPESKILVVT  118 (142)
T ss_dssp             CCCCCCSSCCHHHHHHHHHHHHHHHHHHHHTTSTTCEEEECS
T ss_pred             ccccCCCCCchHHHHHHhhHHHHHHHHHHHhhCCCcEEEEec
Confidence            643    22221    1223444444433   5678877765

>d1djqa3 c.4.1.1 (A:341-489,A:646-729) Trimethylamine dehydrogenase, middle domain {Methylophilus methylotrophus, w3a1 [TaxId: 17]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: Trimethylamine dehydrogenase, middle domain
species: Methylophilus methylotrophus, w3a1 [TaxId: 17]

Probab=91.71  E-value=0.052  Score=44.60  Aligned_cols=38  Identities=18%  Similarity=0.184  Sum_probs=32.1

Q ss_pred             CCCCEEEEeccCCChhhHHHHHhhcCCCcEEEEEeCChHH
Q 042119          129 VQPKKVAFVGSGPMPLTSIIMAKHHLTSTHFDNFDIDEAA  168 (286)
Q Consensus       129 ~~~~~VL~IG~G~lp~tai~lA~~~~~g~~V~~iDid~~a  168 (286)
                      ..+++|+.||+||.|+++...+++  .|..|+.+|.+++.
T Consensus        47 ~~~k~VvIIGaGpAGl~aA~~l~~--~G~~v~l~E~~~~~   84 (233)
T d1djqa3          47 KNKDSVLIVGAGPSGSEAARVLME--SGYTVHLTDTAEKI   84 (233)
T ss_dssp             SSCCEEEEECCSHHHHHHHHHHHH--TTCEEEEECSSSST
T ss_pred             cCCceEEEEcccHHHHHHHHHHHH--hccceeeEeecccc
Confidence            577999999999999998886553  78999999987643

>d1fmca_ c.2.1.2 (A:) 7-alpha-hydroxysteroid dehydrogenase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 7-alpha-hydroxysteroid dehydrogenase
species: Escherichia coli [TaxId: 562]

Probab=91.67  E-value=0.29  Score=40.86  Aligned_cols=75  Identities=20%  Similarity=0.192  Sum_probs=56.1

Q ss_pred             CCCEEEEeccCCChhhH---HHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEccccchh---------
Q 042119          130 QPKKVAFVGSGPMPLTS---IIMAKHHLTSTHFDNFDIDEAANDVARSIVASDAEFEGRMKFLTRDIMEVK---------  197 (286)
Q Consensus       130 ~~~~VL~IG~G~lp~ta---i~lA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~g~l~~~i~f~~~D~~~~~---------  197 (286)
                      .++.++.-|++ .|+..   ..||+   .|++|+..|++++.++...+.++..|   .++.++.+|+.+..         
T Consensus        10 ~gK~alITGas-~GIG~aia~~la~---~Ga~V~~~~r~~~~~~~~~~~l~~~g---~~~~~~~~Dvs~~~~~~~~~~~~   82 (255)
T d1fmca_          10 DGKCAIITGAG-AGIGKEIAITFAT---AGASVVVSDINADAANHVVDEIQQLG---GQAFACRCDITSEQELSALADFA   82 (255)
T ss_dssp             TTCEEEETTTT-SHHHHHHHHHHHT---TTCEEEEEESCHHHHHHHHHHHHHTT---CCEEEEECCTTCHHHHHHHHHHH
T ss_pred             CCCEEEEeCCC-cHHHHHHHHHHHH---CCCEEEEEECCHHHHHHHHHHHHHcC---CcEEEEEccCCCHHHHHHHHHHH
Confidence            57888888876 46543   34444   89999999999999998888888877   57889999998632         


Q ss_pred             -hcCCCcceeehhhh
Q 042119          198 -EQLGEYDCIFLAAL  211 (286)
Q Consensus       198 -~~l~~fD~V~~aal  211 (286)
                       ..++..|+++..+-
T Consensus        83 ~~~~g~iDilvnnAG   97 (255)
T d1fmca_          83 ISKLGKVDILVNNAG   97 (255)
T ss_dssp             HHHHSSCCEEEECCC
T ss_pred             HHHcCCCCEeeeCCc
Confidence             23357888776553

>d2voua1 c.3.1.2 (A:2-163,A:292-394) Dihydroxypyridine hydroxylase DhpH {Arthrobacter nicotinovorans [TaxId: 29320]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Dihydroxypyridine hydroxylase DhpH
species: Arthrobacter nicotinovorans [TaxId: 29320]

Probab=91.66  E-value=0.053  Score=44.31  Aligned_cols=49  Identities=14%  Similarity=0.244  Sum_probs=36.9

Q ss_pred             CCCEEEEeccCCChhhHHHHHhhcCCCcEEEEEeCChHH----------HHHHHHHHHhcC
Q 042119          130 QPKKVAFVGSGPMPLTSIIMAKHHLTSTHFDNFDIDEAA----------NDVARSIVASDA  180 (286)
Q Consensus       130 ~~~~VL~IG~G~lp~tai~lA~~~~~g~~V~~iDid~~a----------i~~Ar~~~~~~g  180 (286)
                      ...||+.||+||.|+++....++  .|.+|+.+|.+++-          ...+.+.+.++|
T Consensus         3 ~~~kV~IiGaG~aGl~~A~~L~~--~G~~v~v~Er~~~~~~~~~~g~~~~~~~~~~l~~~g   61 (265)
T d2voua1           3 TTDRIAVVGGSISGLTAALMLRD--AGVDVDVYERSPQPLSGFGTGIVVQPELVHYLLEQG   61 (265)
T ss_dssp             CCSEEEEECCSHHHHHHHHHHHH--TTCEEEEECSSSSSCCCCSCEEECCHHHHHHHHHTT
T ss_pred             CCCcEEEECcCHHHHHHHHHHHH--CCCCEEEEeCCCCCCCCCceEEEECccHHHHHHHcC
Confidence            46899999999999887665543  79999999986541          245566677777

>d1nhpa2 c.3.1.5 (A:120-242) NADH peroxidase {Enterococcus faecalis [TaxId: 1351]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH peroxidase
species: Enterococcus faecalis [TaxId: 1351]

Probab=91.66  E-value=0.28  Score=36.33  Aligned_cols=57  Identities=16%  Similarity=0.204  Sum_probs=39.5

Q ss_pred             CCCCEEEEeccCCChhhHHHHHhhcCCCcEEEEEeCC---------hHHHHHHHHHHHhcCCCCCCeEEEEcc
Q 042119          129 VQPKKVAFVGSGPMPLTSIIMAKHHLTSTHFDNFDID---------EAANDVARSIVASDAEFEGRMKFLTRD  192 (286)
Q Consensus       129 ~~~~~VL~IG~G~lp~tai~lA~~~~~g~~V~~iDid---------~~ai~~Ar~~~~~~g~l~~~i~f~~~D  192 (286)
                      ..+++|+.||+|+.|+-......  ..|.+||-++..         +++.+..++.++..|     |+++++.
T Consensus        28 ~~~k~vvViGgG~iG~E~A~~l~--~~g~~Vtlie~~~~~l~~~~d~~~~~~~~~~l~~~g-----v~~~~~~   93 (123)
T d1nhpa2          28 PEVNNVVVIGSGYIGIEAAEAFA--KAGKKVTVIDILDRPLGVYLDKEFTDVLTEEMEANN-----ITIATGE   93 (123)
T ss_dssp             TTCCEEEEECCSHHHHHHHHHHH--HTTCEEEEEESSSSTTTTTCCHHHHHHHHHHHHTTT-----EEEEESC
T ss_pred             cCCCEEEEECChHHHHHHHHHhh--ccceEEEEEEecCcccccccchhhHHHHHHHhhcCC-----eEEEeCc
Confidence            56789999999988876654444  279999999764         445555666666555     5665554

>d1xeaa1 c.2.1.3 (A:2-122,A:267-312) Putative oxidoreductase VCA1048 {Vibrio cholerae [TaxId: 666]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Putative oxidoreductase VCA1048
species: Vibrio cholerae [TaxId: 666]

Probab=91.65  E-value=0.13  Score=40.06  Aligned_cols=67  Identities=13%  Similarity=0.179  Sum_probs=42.7

Q ss_pred             CEEEEeccCCChhhH-H-HHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEccccchhhcCCCcceeehh
Q 042119          132 KKVAFVGSGPMPLTS-I-IMAKHHLTSTHFDNFDIDEAANDVARSIVASDAEFEGRMKFLTRDIMEVKEQLGEYDCIFLA  209 (286)
Q Consensus       132 ~~VL~IG~G~lp~ta-i-~lA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~g~l~~~i~f~~~D~~~~~~~l~~fD~V~~a  209 (286)
                      .||..||||..|... + .+.  ..++..++.+|.+++..+..   .+..+. . .   ...|..++..  .++|+|+++
T Consensus         2 irvgiiG~G~~~~~~~~~~l~--~~~~~~~~~~d~~~~~~~~~---~~~~~~-~-~---~~~~~~~ll~--~~iD~V~I~   69 (167)
T d1xeaa1           2 LKIAMIGLGDIAQKAYLPVLA--QWPDIELVLCTRNPKVLGTL---ATRYRV-S-A---TCTDYRDVLQ--YGVDAVMIH   69 (167)
T ss_dssp             EEEEEECCCHHHHHTHHHHHT--TSTTEEEEEECSCHHHHHHH---HHHTTC-C-C---CCSSTTGGGG--GCCSEEEEC
T ss_pred             eEEEEEcCCHHHHHHHHHHHH--hCCCcEEEEEECCHHHHHHH---HHhccc-c-c---ccccHHHhcc--cccceeccc
Confidence            489999999665332 2 233  36788999999998775544   444552 1 1   2356666553  368999876


Q ss_pred             h
Q 042119          210 A  210 (286)
Q Consensus       210 a  210 (286)
                      .
T Consensus        70 t   70 (167)
T d1xeaa1          70 A   70 (167)
T ss_dssp             S
T ss_pred             c
Confidence            5

>d1h6da1 c.2.1.3 (A:51-212,A:375-433) Glucose-fructose oxidoreductase, N-terminal domain {Zymomonas mobilis [TaxId: 542]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Glucose-fructose oxidoreductase, N-terminal domain
species: Zymomonas mobilis [TaxId: 542]

Probab=91.65  E-value=0.17  Score=41.51  Aligned_cols=76  Identities=12%  Similarity=0.166  Sum_probs=46.8

Q ss_pred             CCCCEEEEeccCCChhhHH-HHHhhcCCCcEEEE-EeCChHHHHHHHHHHHhcCCCCCCeEEEEccccchhhcCCCccee
Q 042119          129 VQPKKVAFVGSGPMPLTSI-IMAKHHLTSTHFDN-FDIDEAANDVARSIVASDAEFEGRMKFLTRDIMEVKEQLGEYDCI  206 (286)
Q Consensus       129 ~~~~~VL~IG~G~lp~tai-~lA~~~~~g~~V~~-iDid~~ai~~Ar~~~~~~g~l~~~i~f~~~D~~~~~~~l~~fD~V  206 (286)
                      ..+-||..||||.++..-. ...+ ..++.++++ +|++++..+.   ..++.| +...-.+...|..++..+ .+.|+|
T Consensus        31 ~~~iriaiIG~G~~~~~~~~~~~~-~~~~~~ivav~d~~~~~a~~---~~~~~~-i~~~~~~~~~d~~ell~~-~~iD~V  104 (221)
T d1h6da1          31 DRRFGYAIVGLGKYALNQILPGFA-GCQHSRIEALVSGNAEKAKI---VAAEYG-VDPRKIYDYSNFDKIAKD-PKIDAV  104 (221)
T ss_dssp             CCCEEEEEECCSHHHHHTHHHHTT-TCSSEEEEEEECSCHHHHHH---HHHHTT-CCGGGEECSSSGGGGGGC-TTCCEE
T ss_pred             CCCEEEEEEcCcHHHHHHHHHHHH-hCCCceEEEEecCCHHHHHH---HHHhhc-cccccccccCchhhhccc-ccceee
Confidence            3446999999997664322 2222 357888885 5999877544   444566 332222334666665543 479999


Q ss_pred             ehhh
Q 042119          207 FLAA  210 (286)
Q Consensus       207 ~~aa  210 (286)
                      +++.
T Consensus       105 ~I~t  108 (221)
T d1h6da1         105 YIIL  108 (221)
T ss_dssp             EECS
T ss_pred             eecc
Confidence            8765

>d1feca2 c.3.1.5 (A:170-286) Trypanothione reductase {Crithidia fasciculata [TaxId: 5656]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Trypanothione reductase
species: Crithidia fasciculata [TaxId: 5656]

Probab=91.53  E-value=0.35  Score=35.21  Aligned_cols=52  Identities=13%  Similarity=0.126  Sum_probs=38.4

Q ss_pred             CCCCEEEEeccCCChhhHHHH-HhhcCCCcEEEEEeC--------ChHHHHHHHHHHHhcC
Q 042119          129 VQPKKVAFVGSGPMPLTSIIM-AKHHLTSTHFDNFDI--------DEAANDVARSIVASDA  180 (286)
Q Consensus       129 ~~~~~VL~IG~G~lp~tai~l-A~~~~~g~~V~~iDi--------d~~ai~~Ar~~~~~~g  180 (286)
                      ..|++|+.||+|+.|+-...+ ++....|.+|+-++.        |++..+..++.+++.|
T Consensus        16 ~~p~~v~IiGgG~ig~E~A~~l~~~~~~g~~Vtli~~~~~il~~~d~~~~~~~~~~l~~~G   76 (117)
T d1feca2          16 EAPKRALCVGGGYISIEFAGIFNAYKARGGQVDLAYRGDMILRGFDSELRKQLTEQLRANG   76 (117)
T ss_dssp             SCCSEEEEECSSHHHHHHHHHHHHHSCTTCEEEEEESSSSSSTTSCHHHHHHHHHHHHHTT
T ss_pred             ccCCeEEEECCChHHHHHHHHhHhhcccccccceecccccccccccchhhHHHHHHHhhCc
Confidence            567999999999877654332 232235899999987        4667888888888877

>d1cjca2 c.4.1.1 (A:6-106,A:332-460) Adrenodoxin reductase of mitochondrial p450 systems {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: Adrenodoxin reductase of mitochondrial p450 systems
species: Cow (Bos taurus) [TaxId: 9913]

Probab=91.44  E-value=0.053  Score=44.05  Aligned_cols=34  Identities=26%  Similarity=0.500  Sum_probs=28.8

Q ss_pred             EEEEeccCCChhhHHH-HHhhcCCCcEEEEEeCChH
Q 042119          133 KVAFVGSGPMPLTSII-MAKHHLTSTHFDNFDIDEA  167 (286)
Q Consensus       133 ~VL~IG~G~lp~tai~-lA~~~~~g~~V~~iDid~~  167 (286)
                      ||+.||+||-|+|+.. |++ ...|.+||.+|..+.
T Consensus         3 kv~iIGaGpaGl~aA~~L~~-~~~~~~V~v~e~~~~   37 (230)
T d1cjca2           3 QICVVGSGPAGFYTAQHLLK-HHSRAHVDIYEKQLV   37 (230)
T ss_dssp             EEEEECCSHHHHHHHHHHHH-HCSSCEEEEECSSSS
T ss_pred             eEEEECccHHHHHHHHHHHh-cCCCCeEEEEeCCCC
Confidence            8999999999999886 444 457899999999874

>d1mo9a2 c.3.1.5 (A:193-313) NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase {Xanthobacter sp., py2 [TaxId: 35809]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase
species: Xanthobacter sp., py2 [TaxId: 35809]

Probab=91.41  E-value=0.37  Score=35.07  Aligned_cols=51  Identities=8%  Similarity=-0.037  Sum_probs=37.4

Q ss_pred             CCCCCEEEEeccCCChhhHHHHHhhcCCCcEEEEEeCC--------hHHHHHHHHHHHhcC
Q 042119          128 VVQPKKVAFVGSGPMPLTSIIMAKHHLTSTHFDNFDID--------EAANDVARSIVASDA  180 (286)
Q Consensus       128 ~~~~~~VL~IG~G~lp~tai~lA~~~~~g~~V~~iDid--------~~ai~~Ar~~~~~~g  180 (286)
                      ..++++|+.||+|+.|+-.....+  ..|.+|+.++..        ++..+..++.+++.|
T Consensus        19 ~~~~~~vvVvGgG~ig~E~A~~l~--~~g~~vt~i~~~~~~l~~~d~~~~~~~~~~l~~~g   77 (121)
T d1mo9a2          19 YEPGSTVVVVGGSKTAVEYGCFFN--ATGRRTVMLVRTEPLKLIKDNETRAYVLDRMKEQG   77 (121)
T ss_dssp             SCCCSEEEEECCSHHHHHHHHHHH--HTTCEEEEECSSCTTTTCCSHHHHHHHHHHHHHTT
T ss_pred             hCCCCEEEEECCCHHHHHHHHHHH--hcchhheEeeccchhhcccccchhhhhhhhhhccc
Confidence            457899999999987765444333  278999999965        445677777777776

>d1e5qa1 c.2.1.3 (A:2-124,A:392-450) Saccharopine reductase {Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Saccharopine reductase
species: Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]

Probab=91.36  E-value=0.19  Score=38.42  Aligned_cols=45  Identities=13%  Similarity=0.070  Sum_probs=32.1

Q ss_pred             CCEEEEeccCCChhhHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcC
Q 042119          131 PKKVAFVGSGPMPLTSIIMAKHHLTSTHFDNFDIDEAANDVARSIVASDA  180 (286)
Q Consensus       131 ~~~VL~IG~G~lp~tai~lA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~g  180 (286)
                      .++|+.||+|-+|........  ..|.+|+.+|++.+..+   ++.+..+
T Consensus         2 ~K~IliiGaG~~G~~~a~~L~--~~g~~V~v~dr~~~~a~---~l~~~~~   46 (182)
T d1e5qa1           2 TKSVLMLGSGFVTRPTLDVLT--DSGIKVTVACRTLESAK---KLSAGVQ   46 (182)
T ss_dssp             CCEEEEECCSTTHHHHHHHHH--TTTCEEEEEESCHHHHH---HHHTTCT
T ss_pred             CCEEEEECCCHHHHHHHHHHH--hCCCEEEEEECChHHHH---HHHhccc
Confidence            589999999988865443222  36899999999998544   4444443

>d1lqta2 c.4.1.1 (A:2-108,A:325-456) Ferredoxin:NADP reductase FprA {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: Ferredoxin:NADP reductase FprA
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=91.27  E-value=0.056  Score=43.60  Aligned_cols=36  Identities=25%  Similarity=0.314  Sum_probs=28.0

Q ss_pred             CCEEEEeccCCChhhHHHH-Hhh----cCCCcEEEEEeCCh
Q 042119          131 PKKVAFVGSGPMPLTSIIM-AKH----HLTSTHFDNFDIDE  166 (286)
Q Consensus       131 ~~~VL~IG~G~lp~tai~l-A~~----~~~g~~V~~iDid~  166 (286)
                      |.||+.||+||-|+++... +++    ...+.+||.+|..+
T Consensus         2 p~~VaVIGaGpaGL~aA~~L~~~G~~~~~~~~~V~v~E~~~   42 (239)
T d1lqta2           2 PYYIAIVGSGPSAFFAAASLLKAADTTEDLDMAVDMLEMLP   42 (239)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHHHHHHSTTCCEEEEEEESSS
T ss_pred             CcEEEEECcCHHHHHHHHHHHHcCCccccCCCceEEEecCC
Confidence            5799999999999988754 442    13557899999886

>d1dxla2 c.3.1.5 (A:153-275) Dihydrolipoamide dehydrogenase {Garden pea (Pisum sativum) [TaxId: 3888]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Garden pea (Pisum sativum) [TaxId: 3888]

Probab=91.24  E-value=0.13  Score=38.23  Aligned_cols=50  Identities=14%  Similarity=0.171  Sum_probs=39.5

Q ss_pred             CCCCEEEEeccCCChhhHHHHHhhcCCCcEEEEEeC--------ChHHHHHHHHHHHhcC
Q 042119          129 VQPKKVAFVGSGPMPLTSIIMAKHHLTSTHFDNFDI--------DEAANDVARSIVASDA  180 (286)
Q Consensus       129 ~~~~~VL~IG~G~lp~tai~lA~~~~~g~~V~~iDi--------d~~ai~~Ar~~~~~~g  180 (286)
                      ..|++++.||+|..|+-...+..  ..|.+||-++.        |+++.+...+.+++.|
T Consensus        23 ~~p~~~viiG~G~iglE~A~~~~--~~G~~Vtvi~~~~~~l~~~d~~~~~~l~~~l~~~G   80 (123)
T d1dxla2          23 EIPKKLVVIGAGYIGLEMGSVWG--RIGSEVTVVEFASEIVPTMDAEIRKQFQRSLEKQG   80 (123)
T ss_dssp             SCCSEEEESCCSHHHHHHHHHHH--HHTCEEEEECSSSSSSTTSCHHHHHHHHHHHHHSS
T ss_pred             ccCCeEEEEccchHHHHHHHHHH--hcCCeEEEEEEccccCchhhhcchhhhhhhhhccc
Confidence            67899999999977765444444  27999999976        5778888888888888

>d1xkqa_ c.2.1.2 (A:) Hypothetical protein R05D8.7 {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Hypothetical protein R05D8.7
species: Caenorhabditis elegans [TaxId: 6239]

Probab=91.21  E-value=0.22  Score=41.94  Aligned_cols=78  Identities=18%  Similarity=0.229  Sum_probs=57.5

Q ss_pred             CCCEEEEeccCCChhh---HHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEccccchh---------
Q 042119          130 QPKKVAFVGSGPMPLT---SIIMAKHHLTSTHFDNFDIDEAANDVARSIVASDAEFEGRMKFLTRDIMEVK---------  197 (286)
Q Consensus       130 ~~~~VL~IG~G~lp~t---ai~lA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~g~l~~~i~f~~~D~~~~~---------  197 (286)
                      +++.++..|++ -|+.   +..||+   .|++|+..|++++.++.+.+.+.+.|.-..++.++.+|+.+..         
T Consensus         4 ~gK~alVTGas-~GIG~aia~~la~---~Ga~V~l~~r~~~~l~~~~~~l~~~~~~~~~~~~~~~Dvs~~~~v~~~~~~~   79 (272)
T d1xkqa_           4 SNKTVIITGSS-NGIGRTTAILFAQ---EGANVTITGRSSERLEETRQIILKSGVSEKQVNSVVADVTTEDGQDQIINST   79 (272)
T ss_dssp             TTCEEEETTCS-SHHHHHHHHHHHH---TTCEEEEEESCHHHHHHHHHHHHTTTCCGGGEEEEECCTTSHHHHHHHHHHH
T ss_pred             CCCEEEEeCcC-cHHHHHHHHHHHH---CCCEEEEEECCHHHHHHHHHHHHhcCCCCCceEEEEccCCCHHHHHHHHHHH
Confidence            46788888876 4653   345555   8999999999999999999988887632457999999987632         


Q ss_pred             -hcCCCcceeehhhh
Q 042119          198 -EQLGEYDCIFLAAL  211 (286)
Q Consensus       198 -~~l~~fD~V~~aal  211 (286)
                       ..++..|+++..+-
T Consensus        80 ~~~~g~iDilvnnAG   94 (272)
T d1xkqa_          80 LKQFGKIDVLVNNAG   94 (272)
T ss_dssp             HHHHSCCCEEEECCC
T ss_pred             HHHhCCceEEEeCCc
Confidence             13356888776543

>d2jfga1 c.5.1.1 (A:1-93) UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase MurD {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: MurCD N-terminal domain
superfamily: MurCD N-terminal domain
family: MurCD N-terminal domain
domain: UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase MurD
species: Escherichia coli [TaxId: 562]

Probab=91.14  E-value=0.021  Score=40.80  Aligned_cols=71  Identities=17%  Similarity=0.105  Sum_probs=46.9

Q ss_pred             CCCEEEEeccCCChhhHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEccccchhhcCCCcceeehh
Q 042119          130 QPKKVAFVGSGPMPLTSIIMAKHHLTSTHFDNFDIDEAANDVARSIVASDAEFEGRMKFLTRDIMEVKEQLGEYDCIFLA  209 (286)
Q Consensus       130 ~~~~VL~IG~G~lp~tai~lA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~g~l~~~i~f~~~D~~~~~~~l~~fD~V~~a  209 (286)
                      .+++|+.+|-|-.|+++..+..+  .|++|+++|..+..-..     ..+   ...+.++.+...+  ..+.++|+|+.+
T Consensus         4 ~~K~v~ViGlG~sG~s~a~~L~~--~g~~v~~~D~~~~~~~~-----~~~---~~~~~~~~~~~~~--~~~~~~d~vi~S   71 (93)
T d2jfga1           4 QGKNVVIIGLGLTGLSCVDFFLA--RGVTPRVMDTRMTPPGL-----DKL---PEAVERHTGSLND--EWLMAADLIVAS   71 (93)
T ss_dssp             TTCCEEEECCSHHHHHHHHHHHH--TTCCCEEEESSSSCTTG-----GGS---CTTSCEEESBCCH--HHHHHCSEEEEC
T ss_pred             CCCEEEEEeECHHHHHHHHHHHH--CCCEEEEeeCCcCchhH-----HHH---hhccceeecccch--hhhccCCEEEEC
Confidence            47899999999888887766653  79999999986542111     112   2344555555322  223578999987


Q ss_pred             hhc
Q 042119          210 ALV  212 (286)
Q Consensus       210 alv  212 (286)
                      --+
T Consensus        72 PGi   74 (93)
T d2jfga1          72 PGI   74 (93)
T ss_dssp             TTS
T ss_pred             CCC
Confidence            655

>d1q1ra2 c.3.1.5 (A:115-247) Putidaredoxin reductase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Putidaredoxin reductase
species: Pseudomonas putida [TaxId: 303]

Probab=91.10  E-value=0.28  Score=36.89  Aligned_cols=68  Identities=12%  Similarity=0.205  Sum_probs=44.1

Q ss_pred             cCcCccchhhhhHHHHHHHHhcCCCCCCEEEEeccCCChhhHHHHHhhcCCCcEEEEEeCChH---------HHHHHHHH
Q 042119          105 LFPYYGNYVKLSKLEYTILSENGVVQPKKVAFVGSGPMPLTSIIMAKHHLTSTHFDNFDIDEA---------ANDVARSI  175 (286)
Q Consensus       105 ~fpy~~ny~~l~~~E~~~l~~~~~~~~~~VL~IG~G~lp~tai~lA~~~~~g~~V~~iDid~~---------ai~~Ar~~  175 (286)
                      .+.|+.+.....+.     .+ ...++++|+.||+|+.|+-.....+.  .|.+||-+|..+.         .-+..++.
T Consensus        15 ~v~~lr~~~d~~~l-----~~-~~~~~k~v~VIGgG~iG~E~A~~l~~--~g~~Vtvie~~~~~l~~~~~~~~~~~~~~~   86 (133)
T d1q1ra2          15 NFRYLRTLEDAECI-----RR-QLIADNRLVVIGGGYIGLEVAATAIK--ANMHVTLLDTAARVLERVTAPPVSAFYEHL   86 (133)
T ss_dssp             TEEESSSHHHHHHH-----HH-TCCTTCEEEEECCSHHHHHHHHHHHH--TTCEEEEECSSSSTTTTTSCHHHHHHHHHH
T ss_pred             CeeEeCCHHHHHHH-----HH-hhccCCEEEEECCchHHHHHHHHHHh--hCcceeeeeecccccccccchhhhhhhhhc
Confidence            34555555443332     22 23568999999999888766555542  7999999997543         44455566


Q ss_pred             HHhcC
Q 042119          176 VASDA  180 (286)
Q Consensus       176 ~~~~g  180 (286)
                      +++.|
T Consensus        87 ~~~~G   91 (133)
T d1q1ra2          87 HREAG   91 (133)
T ss_dssp             HHHHT
T ss_pred             ccccc
Confidence            66666

>d1ja9a_ c.2.1.2 (A:) 1,3,6,8-tetrahydroxynaphthalene reductase {Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 1,3,6,8-tetrahydroxynaphthalene reductase
species: Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]

Probab=90.98  E-value=0.67  Score=38.37  Aligned_cols=103  Identities=14%  Similarity=0.187  Sum_probs=70.3

Q ss_pred             CCCEEEEeccCCChh---hHHHHHhhcCCCcEEEE-EeCChHHHHHHHHHHHhcCCCCCCeEEEEccccchhh-------
Q 042119          130 QPKKVAFVGSGPMPL---TSIIMAKHHLTSTHFDN-FDIDEAANDVARSIVASDAEFEGRMKFLTRDIMEVKE-------  198 (286)
Q Consensus       130 ~~~~VL~IG~G~lp~---tai~lA~~~~~g~~V~~-iDid~~ai~~Ar~~~~~~g~l~~~i~f~~~D~~~~~~-------  198 (286)
                      .|+.||.-|++ .|+   ++..|++   .|++|+. .+.+.+.++...+.+++.|   .++.++..|+.+...       
T Consensus         5 ~GK~alITGas-~GIG~aia~~la~---~G~~Vvi~~~~~~~~~~~~~~~~~~~g---~~~~~~~~D~~~~~~v~~~~~~   77 (259)
T d1ja9a_           5 AGKVALTTGAG-RGIGRGIAIELGR---RGASVVVNYGSSSKAAEEVVAELKKLG---AQGVAIQADISKPSEVVALFDK   77 (259)
T ss_dssp             TTCEEEETTTT-SHHHHHHHHHHHH---TTCEEEEEESSCHHHHHHHHHHHHHTT---CCEEEEECCTTSHHHHHHHHHH
T ss_pred             CCCEEEEeCCC-CHHHHHHHHHHHH---cCCEEEEEcCCChHHHHHHHHHHHHcC---CCceEecCCCCCHHHHHHHHHH
Confidence            57899998876 563   4555666   7999886 5778888899899998888   478999999976321       


Q ss_pred             ---cCCCcceeehhhhccC-------ChhH-----------HHHHHHHHHhhccCCcEEEEe
Q 042119          199 ---QLGEYDCIFLAALVGM-------SKEE-----------KLTILGHIRKYMKDGGILLVR  239 (286)
Q Consensus       199 ---~l~~fD~V~~aalvg~-------~~~~-----------k~~vl~~l~~~l~pgg~lv~r  239 (286)
                         ..+..|+++..+-+..       +.+.           ...+.+.+.++|+.+|.+++-
T Consensus        78 ~~~~~g~idilinnag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~m~~~g~~iii  139 (259)
T d1ja9a_          78 AVSHFGGLDFVMSNSGMEVWCDELEVTQELFDKVFNLNTRGQFFVAQQGLKHCRRGGRIILT  139 (259)
T ss_dssp             HHHHHSCEEEEECCCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHEEEEEEEEEE
T ss_pred             HHHHcCCCcEEEeccccccccccccchHHHHHHHHhhccceeeeehhhhhhhhhcCCccccc
Confidence               3346787765553311       1111           234667778888887766554

>d1gega_ c.2.1.2 (A:) meso-2,3-butanediol dehydrogenase {Klebsiella pneumoniae [TaxId: 573]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: meso-2,3-butanediol dehydrogenase
species: Klebsiella pneumoniae [TaxId: 573]

Probab=90.87  E-value=0.39  Score=39.92  Aligned_cols=72  Identities=24%  Similarity=0.352  Sum_probs=52.1

Q ss_pred             CEEEE-eccCCChhh---HHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEccccchh----------
Q 042119          132 KKVAF-VGSGPMPLT---SIIMAKHHLTSTHFDNFDIDEAANDVARSIVASDAEFEGRMKFLTRDIMEVK----------  197 (286)
Q Consensus       132 ~~VL~-IG~G~lp~t---ai~lA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~g~l~~~i~f~~~D~~~~~----------  197 (286)
                      +||+. -|++ .|+.   +..||+   .|++|+..|++++.++...+.+++.|   .++.++.+|+.+..          
T Consensus         1 KKValITGas-~GIG~aia~~la~---~Ga~V~~~~r~~~~l~~~~~~i~~~g---~~~~~~~~Dv~~~~~v~~~~~~~~   73 (255)
T d1gega_           1 KKVALVTGAG-QGIGKAIALRLVK---DGFAVAIADYNDATAKAVASEINQAG---GHAVAVKVDVSDRDQVFAAVEQAR   73 (255)
T ss_dssp             CCEEEEETTT-SHHHHHHHHHHHH---TTCEEEEEESCHHHHHHHHHHHHHTT---CCEEEEECCTTSHHHHHHHHHHHH
T ss_pred             CCEEEEcCCc-cHHHHHHHHHHHH---CCCEEEEEECCHHHHHHHHHHHHhcC---CcEEEEEeeCCCHHHHHHHHHHHH
Confidence            46644 4665 4543   334444   79999999999999998888888877   57899999998632          


Q ss_pred             hcCCCcceeehhh
Q 042119          198 EQLGEYDCIFLAA  210 (286)
Q Consensus       198 ~~l~~fD~V~~aa  210 (286)
                      ..++..|+++..+
T Consensus        74 ~~~g~iDilVnnA   86 (255)
T d1gega_          74 KTLGGFDVIVNNA   86 (255)
T ss_dssp             HHTTCCCEEEECC
T ss_pred             HHhCCccEEEecc
Confidence            2456789877554

>d1c0pa1 c.4.1.2 (A:999-1193,A:1289-1361) D-aminoacid oxidase, N-terminal domain {Rhodotorula gracilis [TaxId: 5286]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: D-aminoacid oxidase, N-terminal domain
domain: D-aminoacid oxidase, N-terminal domain
species: Rhodotorula gracilis [TaxId: 5286]

Probab=90.73  E-value=0.092  Score=42.17  Aligned_cols=35  Identities=23%  Similarity=0.336  Sum_probs=28.5

Q ss_pred             CCCCEEEEeccCCChhhHHHHHhhcCCCcEEEEEeCC
Q 042119          129 VQPKKVAFVGSGPMPLTSIIMAKHHLTSTHFDNFDID  165 (286)
Q Consensus       129 ~~~~~VL~IG~G~lp~tai~lA~~~~~g~~V~~iDid  165 (286)
                      ...+||+.||+|..|+++.+..++  .|.+|+.||.+
T Consensus         4 ~~~~kVvVIGaGiaGl~~A~~L~~--~G~~V~vier~   38 (268)
T d1c0pa1           4 HSQKRVVVLGSGVIGLSSALILAR--KGYSVHILARD   38 (268)
T ss_dssp             CCSCEEEEECCSHHHHHHHHHHHH--TTCEEEEEESS
T ss_pred             CCCCcEEEECccHHHHHHHHHHHH--CCCCEEEEeCC
Confidence            566799999999999877665553  78999999975

>d2rhca1 c.2.1.2 (A:5-261) beta-keto acyl carrier protein reductase {Streptomyces coelicolor [TaxId: 1902]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Streptomyces coelicolor [TaxId: 1902]

Probab=90.40  E-value=0.74  Score=38.09  Aligned_cols=73  Identities=14%  Similarity=0.029  Sum_probs=52.8

Q ss_pred             CEEEEeccCCChhh---HHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEccccchh----------h
Q 042119          132 KKVAFVGSGPMPLT---SIIMAKHHLTSTHFDNFDIDEAANDVARSIVASDAEFEGRMKFLTRDIMEVK----------E  198 (286)
Q Consensus       132 ~~VL~IG~G~lp~t---ai~lA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~g~l~~~i~f~~~D~~~~~----------~  198 (286)
                      +.+|.-|++ -|+.   +..||+   .|++|+..|++++.++...+.++..|   .++.++.+|+.+..          .
T Consensus         3 KValITGas-~GIG~aia~~la~---~Ga~V~i~~r~~~~l~~~~~~l~~~g---~~~~~~~~Dvs~~~~v~~~~~~~~~   75 (257)
T d2rhca1           3 EVALVTGAT-SGIGLEIARRLGK---EGLRVFVCARGEEGLRTTLKELREAG---VEADGRTCDVRSVPEIEALVAAVVE   75 (257)
T ss_dssp             CEEEEESCS-SHHHHHHHHHHHH---TTCEEEEEESCHHHHHHHHHHHHHTT---CCEEEEECCTTCHHHHHHHHHHHHH
T ss_pred             CEEEEeCCC-CHHHHHHHHHHHH---CCCEEEEEECCHHHHHHHHHHHHhcC---CcEEEEEeecCCHHHHHHHHHHHHH
Confidence            344555664 4553   344555   89999999999999998888888777   47999999998643          2


Q ss_pred             cCCCcceeehhhh
Q 042119          199 QLGEYDCIFLAAL  211 (286)
Q Consensus       199 ~l~~fD~V~~aal  211 (286)
                      .++..|+++..+-
T Consensus        76 ~~g~iDilVnnAG   88 (257)
T d2rhca1          76 RYGPVDVLVNNAG   88 (257)
T ss_dssp             HTCSCSEEEECCC
T ss_pred             HhCCCCEEEeccc
Confidence            4567898776553

>d1xhca2 c.3.1.5 (A:104-225) NADH oxidase /nitrite reductase {Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH oxidase /nitrite reductase
species: Pyrococcus furiosus [TaxId: 2261]

Probab=90.35  E-value=0.17  Score=37.44  Aligned_cols=55  Identities=11%  Similarity=0.188  Sum_probs=39.0

Q ss_pred             CCCEEEEeccCCChhhHHHHHhhcCCCcEEEEEeCCh-------HHHHHHHHHHHhcCCCCCCeEEEEc
Q 042119          130 QPKKVAFVGSGPMPLTSIIMAKHHLTSTHFDNFDIDE-------AANDVARSIVASDAEFEGRMKFLTR  191 (286)
Q Consensus       130 ~~~~VL~IG~G~lp~tai~lA~~~~~g~~V~~iDid~-------~ai~~Ar~~~~~~g~l~~~i~f~~~  191 (286)
                      .+++|+.||+|+.|+-......  ..|.+||-++.++       ++.+..++.+++.|     |+|+.+
T Consensus        31 ~~~~vvIiGgG~iG~E~A~~l~--~~g~~Vtlv~~~~~l~~~d~~~~~~~~~~l~~~G-----V~~~~~   92 (122)
T d1xhca2          31 NSGEAIIIGGGFIGLELAGNLA--EAGYHVKLIHRGAMFLGLDEELSNMIKDMLEETG-----VKFFLN   92 (122)
T ss_dssp             HHSEEEEEECSHHHHHHHHHHH--HTTCEEEEECSSSCCTTCCHHHHHHHHHHHHHTT-----EEEECS
T ss_pred             cCCcEEEECCcHHHHHHHHHhh--cccceEEEEeccccccCCCHHHHHHHHHHHHHCC-----cEEEeC
Confidence            4589999999987776544443  2799999999754       46666667677666     555544

>d1xq1a_ c.2.1.2 (A:) Tropinone reductase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Tropinone reductase
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=89.90  E-value=0.55  Score=39.17  Aligned_cols=75  Identities=13%  Similarity=-0.005  Sum_probs=56.2

Q ss_pred             CCCEEEEeccCCChh---hHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEccccchhh--------
Q 042119          130 QPKKVAFVGSGPMPL---TSIIMAKHHLTSTHFDNFDIDEAANDVARSIVASDAEFEGRMKFLTRDIMEVKE--------  198 (286)
Q Consensus       130 ~~~~VL~IG~G~lp~---tai~lA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~g~l~~~i~f~~~D~~~~~~--------  198 (286)
                      ++++++.-|++ -|+   ++..||+   .|++|+.+|++++.++...+.+...+   .++.++.+|+.+...        
T Consensus         7 kgK~alVTGas-~GIG~aiA~~la~---~Ga~V~~~~r~~~~l~~~~~~~~~~~---~~~~~~~~Dv~~~~~v~~~~~~~   79 (259)
T d1xq1a_           7 KAKTVLVTGGT-KGIGHAIVEEFAG---FGAVIHTCARNEYELNECLSKWQKKG---FQVTGSVCDASLRPEREKLMQTV   79 (259)
T ss_dssp             TTCEEEETTTT-SHHHHHHHHHHHH---TTCEEEEEESCHHHHHHHHHHHHHTT---CCEEEEECCTTSHHHHHHHHHHH
T ss_pred             CCCEEEEeCCC-CHHHHHHHHHHHH---CCCEEEEEECCHHHHHHHHHHHHhcC---CceEEEeccCCCHHHHHHHHHHH
Confidence            57889998886 566   4555666   79999999999999988888877766   479999999975321        


Q ss_pred             --cC-CCcceeehhhh
Q 042119          199 --QL-GEYDCIFLAAL  211 (286)
Q Consensus       199 --~l-~~fD~V~~aal  211 (286)
                        .+ +..|+++..+-
T Consensus        80 ~~~~~g~idilvnnAG   95 (259)
T d1xq1a_          80 SSMFGGKLDILINNLG   95 (259)
T ss_dssp             HHHHTTCCSEEEEECC
T ss_pred             HHHhCCCccccccccc
Confidence              22 35788776553

>d1spxa_ c.2.1.2 (A:) Glucose dehydrogenase (5l265) {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Glucose dehydrogenase (5l265)
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=89.71  E-value=0.38  Score=40.17  Aligned_cols=77  Identities=13%  Similarity=0.173  Sum_probs=55.2

Q ss_pred             CCCEEEEeccCCChhh---HHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEccccchh---------
Q 042119          130 QPKKVAFVGSGPMPLT---SIIMAKHHLTSTHFDNFDIDEAANDVARSIVASDAEFEGRMKFLTRDIMEVK---------  197 (286)
Q Consensus       130 ~~~~VL~IG~G~lp~t---ai~lA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~g~l~~~i~f~~~D~~~~~---------  197 (286)
                      +++.++.-|++ .|+.   +..||+   .|++|+..|++++.++.+.+.+.+.|.-..++.++.+|+.+..         
T Consensus         4 ~gKvalVTGas-~GIG~aia~~la~---~Ga~V~~~~r~~~~l~~~~~~l~~~~~~~~~~~~~~~Dvt~~~~v~~~~~~~   79 (264)
T d1spxa_           4 AEKVAIITGSS-NGIGRATAVLFAR---EGAKVTITGRHAERLEETRQQILAAGVSEQNVNSVVADVTTDAGQDEILSTT   79 (264)
T ss_dssp             TTCEEEETTTT-SHHHHHHHHHHHH---TTCEEEEEESCHHHHHHHHHHHHHTTCCGGGEEEEECCTTSHHHHHHHHHHH
T ss_pred             CCCEEEEeCcC-CHHHHHHHHHHHH---CCCEEEEEECCHHHHHHHHHHHHhcCCCcCceEEEEccCCCHHHHHHHHHHH
Confidence            46777777875 4554   334444   7999999999999999888888877633457999999997632         


Q ss_pred             -hcCCCcceeehhh
Q 042119          198 -EQLGEYDCIFLAA  210 (286)
Q Consensus       198 -~~l~~fD~V~~aa  210 (286)
                       ..++..|+++..+
T Consensus        80 ~~~~g~iDilvnnA   93 (264)
T d1spxa_          80 LGKFGKLDILVNNA   93 (264)
T ss_dssp             HHHHSCCCEEEECC
T ss_pred             HHHhCCCCEeeccc
Confidence             1335788877554

>d1txga2 c.2.1.6 (A:1-180) Glycerol-3- phosphate dehydrogenase {Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Glycerol-3- phosphate dehydrogenase
species: Archaeoglobus fulgidus [TaxId: 2234]

Probab=89.47  E-value=0.16  Score=40.37  Aligned_cols=98  Identities=14%  Similarity=0.206  Sum_probs=54.7

Q ss_pred             CEEEEeccCCChhhHHH-HHhhcCCCcEEEEEeC--ChHHHHHHHHHH--HhcCCCCCCeEEEEccccchhhcCCCccee
Q 042119          132 KKVAFVGSGPMPLTSII-MAKHHLTSTHFDNFDI--DEAANDVARSIV--ASDAEFEGRMKFLTRDIMEVKEQLGEYDCI  206 (286)
Q Consensus       132 ~~VL~IG~G~lp~tai~-lA~~~~~g~~V~~iDi--d~~ai~~Ar~~~--~~~g~l~~~i~f~~~D~~~~~~~l~~fD~V  206 (286)
                      ++|..||+|.+|.+... |++   -|.+|+-+..  +++.++.-.+.-  ...+.--........  .++.....+.|+|
T Consensus         1 MkI~ViGaG~~GtalA~~la~---~g~~V~l~~r~~~~~~~~~i~~~~~~~~~~~~~~~~~i~~~--~~~~~~~~~ad~I   75 (180)
T d1txga2           1 MIVSILGAGAMGSALSVPLVD---NGNEVRIWGTEFDTEILKSISAGREHPRLGVKLNGVEIFWP--EQLEKCLENAEVV   75 (180)
T ss_dssp             CEEEEESCCHHHHHHHHHHHH---HCCEEEEECCGGGHHHHHHHHTTCCBTTTTBCCCSEEEECG--GGHHHHHTTCSEE
T ss_pred             CEEEEECCCHHHHHHHHHHHH---CCCEEEEEEecccHHHHHHHhhhhhhhhhcchhcccccccc--ccHHHHHhccchh
Confidence            58999999998875433 333   4678887765  443332221110  001100011122211  1223344678999


Q ss_pred             ehhhhccCChhHHHHHHHHHHhhccCCcEEEE
Q 042119          207 FLAALVGMSKEEKLTILGHIRKYMKDGGILLV  238 (286)
Q Consensus       207 ~~aalvg~~~~~k~~vl~~l~~~l~pgg~lv~  238 (286)
                      +++.-    ...-..+++++.+.++++.++++
T Consensus        76 i~avp----s~~~~~~~~~l~~~l~~~~ii~~  103 (180)
T d1txga2          76 LLGVS----TDGVLPVMSRILPYLKDQYIVLI  103 (180)
T ss_dssp             EECSC----GGGHHHHHHHHTTTCCSCEEEEC
T ss_pred             hcccc----hhhhHHHHHhhccccccceeccc
Confidence            87643    25667899999999988765554

>d2ae2a_ c.2.1.2 (A:) Tropinone reductase {Jimsonweed (Datura stramonium), II [TaxId: 4076]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Tropinone reductase
species: Jimsonweed (Datura stramonium), II [TaxId: 4076]

Probab=89.34  E-value=0.65  Score=38.66  Aligned_cols=74  Identities=7%  Similarity=-0.004  Sum_probs=56.2

Q ss_pred             CCCEEEEeccCCChhh---HHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEccccchh---------
Q 042119          130 QPKKVAFVGSGPMPLT---SIIMAKHHLTSTHFDNFDIDEAANDVARSIVASDAEFEGRMKFLTRDIMEVK---------  197 (286)
Q Consensus       130 ~~~~VL~IG~G~lp~t---ai~lA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~g~l~~~i~f~~~D~~~~~---------  197 (286)
                      .++.++.-|++ -|+.   +..|++   .|++|+..|++++.++...+.+...|   .++.++.+|+.+..         
T Consensus         7 ~GK~alITGas-~GIG~aia~~la~---~Ga~V~~~~r~~~~l~~~~~~~~~~g---~~~~~~~~Dv~~~~~v~~~~~~~   79 (259)
T d2ae2a_           7 EGCTALVTGGS-RGIGYGIVEELAS---LGASVYTCSRNQKELNDCLTQWRSKG---FKVEASVCDLSSRSERQELMNTV   79 (259)
T ss_dssp             TTCEEEEESCS-SHHHHHHHHHHHH---TTCEEEEEESCHHHHHHHHHHHHHTT---CEEEEEECCTTCHHHHHHHHHHH
T ss_pred             CCCEEEEeCCC-CHHHHHHHHHHHH---CCCEEEEEECCHHHHHHHHHHHHhcC---CCceEEEeeCCCHHHHHHHHHHH
Confidence            57889998987 4654   455555   79999999999999988888888777   57889999987632         


Q ss_pred             -hcCC-Ccceeehhh
Q 042119          198 -EQLG-EYDCIFLAA  210 (286)
Q Consensus       198 -~~l~-~fD~V~~aa  210 (286)
                       ..++ ..|+++..+
T Consensus        80 ~~~~~~~idilvnnA   94 (259)
T d2ae2a_          80 ANHFHGKLNILVNNA   94 (259)
T ss_dssp             HHHTTTCCCEEEECC
T ss_pred             HHHhCCCceEEEECC
Confidence             2344 588877654

>d1p77a1 c.2.1.7 (A:102-272) Shikimate 5-dehydrogenase AroE {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Shikimate 5-dehydrogenase AroE
species: Haemophilus influenzae [TaxId: 727]

Probab=89.32  E-value=0.88  Score=35.53  Aligned_cols=78  Identities=14%  Similarity=0.147  Sum_probs=47.1

Q ss_pred             CCCCCEEEEeccCCChhhHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEccccchhhcCCCcceee
Q 042119          128 VVQPKKVAFVGSGPMPLTSIIMAKHHLTSTHFDNFDIDEAANDVARSIVASDAEFEGRMKFLTRDIMEVKEQLGEYDCIF  207 (286)
Q Consensus       128 ~~~~~~VL~IG~G~lp~tai~lA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~g~l~~~i~f~~~D~~~~~~~l~~fD~V~  207 (286)
                      ..++++|+.+|+|..+-+.+.-..  ..+.+|+.+.++++..+   ++.+.++ ....+....-|.    ..+..+|+|+
T Consensus        15 ~~~~k~vlIlGaGGaarai~~aL~--~~~~~i~I~nR~~~~a~---~l~~~~~-~~~~~~~~~~~~----~~~~~~diiI   84 (171)
T d1p77a1          15 LRPNQHVLILGAGGATKGVLLPLL--QAQQNIVLANRTFSKTK---ELAERFQ-PYGNIQAVSMDS----IPLQTYDLVI   84 (171)
T ss_dssp             CCTTCEEEEECCSHHHHTTHHHHH--HTTCEEEEEESSHHHHH---HHHHHHG-GGSCEEEEEGGG----CCCSCCSEEE
T ss_pred             CCCCCEEEEECCcHHHHHHHHHHc--ccCceeeeccchHHHHH---HHHHHHh-hccccchhhhcc----ccccccceee
Confidence            357889999999965555443222  25689999999986644   4444443 112344433332    2356899999


Q ss_pred             hhhhccCC
Q 042119          208 LAALVGMS  215 (286)
Q Consensus       208 ~aalvg~~  215 (286)
                      -+.-+||.
T Consensus        85 N~tp~g~~   92 (171)
T d1p77a1          85 NATSAGLS   92 (171)
T ss_dssp             ECCCC---
T ss_pred             eccccccc
Confidence            88777774

>d2ivda1 c.3.1.2 (A:10-306,A:415-464) Protoporphyrinogen oxidase {Myxococcus xanthus [TaxId: 34]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Protoporphyrinogen oxidase
species: Myxococcus xanthus [TaxId: 34]

Probab=88.87  E-value=0.091  Score=42.33  Aligned_cols=33  Identities=21%  Similarity=0.160  Sum_probs=27.3

Q ss_pred             CEEEEeccCCChhhHHHHHhhcCCCcEEEEEeCCh
Q 042119          132 KKVAFVGSGPMPLTSIIMAKHHLTSTHFDNFDIDE  166 (286)
Q Consensus       132 ~~VL~IG~G~lp~tai~lA~~~~~g~~V~~iDid~  166 (286)
                      ++|+.||+|+.|+++.+..++  .|.+|+.+|.++
T Consensus         1 m~V~IIGaG~aGL~aA~~L~~--~G~~V~vlE~~~   33 (347)
T d2ivda1           1 MNVAVVGGGISGLAVAHHLRS--RGTDAVLLESSA   33 (347)
T ss_dssp             CCEEEECCBHHHHHHHHHHHT--TTCCEEEECSSS
T ss_pred             CeEEEECCCHHHHHHHHHHHh--CCCCEEEEecCC
Confidence            479999999999998876653  789999999753

>d1qp8a1 c.2.1.4 (A:83-263) Putative formate dehydrogenase {Archaeon Pyrobaculum aerophilum [TaxId: 13773]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Putative formate dehydrogenase
species: Archaeon Pyrobaculum aerophilum [TaxId: 13773]

Probab=88.44  E-value=0.15  Score=40.99  Aligned_cols=88  Identities=18%  Similarity=0.187  Sum_probs=57.3

Q ss_pred             CCCEEEEeccCCChhhHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEccccchhhcCCCcceeehh
Q 042119          130 QPKKVAFVGSGPMPLTSIIMAKHHLTSTHFDNFDIDEAANDVARSIVASDAEFEGRMKFLTRDIMEVKEQLGEYDCIFLA  209 (286)
Q Consensus       130 ~~~~VL~IG~G~lp~tai~lA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~g~l~~~i~f~~~D~~~~~~~l~~fD~V~~a  209 (286)
                      .+++|..||.|.+|-....+++  ..|.+|.++|.++.           .+.  ..  + ..+   +..-+...|+|.++
T Consensus        41 ~gk~vgIiG~G~IG~~va~~l~--~~g~~v~~~d~~~~-----------~~~--~~--~-~~~---l~ell~~sDiv~~~   99 (181)
T d1qp8a1          41 QGEKVAVLGLGEIGTRVGKILA--ALGAQVRGFSRTPK-----------EGP--WR--F-TNS---LEEALREARAAVCA   99 (181)
T ss_dssp             TTCEEEEESCSTHHHHHHHHHH--HTTCEEEEECSSCC-----------CSS--SC--C-BSC---SHHHHTTCSEEEEC
T ss_pred             cCceEEEeccccccccceeeee--cccccccccccccc-----------ccc--ee--e-eec---hhhhhhccchhhcc
Confidence            4789999999999877777776  37999999999853           221  11  1 122   23344678998875


Q ss_pred             hhccCChhHHHHHHHHHHhhccCCcEEEEee
Q 042119          210 ALVGMSKEEKLTILGHIRKYMKDGGILLVRS  240 (286)
Q Consensus       210 alvg~~~~~k~~vl~~l~~~l~pgg~lv~r~  240 (286)
                      .-.  +.+.+.=+=++..+.||||++||--+
T Consensus       100 ~pl--~~~t~~li~~~~l~~mk~~ailIN~~  128 (181)
T d1qp8a1         100 LPL--NKHTRGLVKYQHLALMAEDAVFVNVG  128 (181)
T ss_dssp             CCC--STTTTTCBCHHHHTTSCTTCEEEECS
T ss_pred             ccc--ccccccccccceeeeccccceEEecc
Confidence            422  22333222246778889999887743

>d7mdha1 c.2.1.5 (A:23-197) Malate dehydrogenase {Sorghum (Sorghum vulgare), chloroplast [TaxId: 4558]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Sorghum (Sorghum vulgare), chloroplast [TaxId: 4558]

Probab=88.40  E-value=1.7  Score=34.16  Aligned_cols=108  Identities=15%  Similarity=0.055  Sum_probs=59.9

Q ss_pred             CCCCEEEEec-cCCChhhHHHH-HhhcCCC----cEEEEEeCChHH---HHHHHHHHHhcCCCCCCeEEEEccccchhhc
Q 042119          129 VQPKKVAFVG-SGPMPLTSIIM-AKHHLTS----THFDNFDIDEAA---NDVARSIVASDAEFEGRMKFLTRDIMEVKEQ  199 (286)
Q Consensus       129 ~~~~~VL~IG-~G~lp~tai~l-A~~~~~g----~~V~~iDid~~a---i~~Ar~~~~~~g~l~~~i~f~~~D~~~~~~~  199 (286)
                      +.+.||..+| +|.+|.+.++. ++....|    ..++-+|+++..   -..+.++-.... ...+-...+.|.   ..+
T Consensus        22 k~~~kV~I~GA~G~Ig~~l~~~La~g~v~g~~~~i~L~L~di~~~~~~l~g~~mdl~d~a~-~~~~~~~~~~~~---~~~   97 (175)
T d7mdha1          22 KKLVNIAVSGAAGMISNHLLFKLASGEVFGQDQPIALKLLGSERSFQALEGVAMELEDSLY-PLLREVSIGIDP---YEV   97 (175)
T ss_dssp             CCCEEEEEETTTSHHHHHHHHHHHHTTTTCTTCCEEEEEECCGGGHHHHHHHHHHHHTTTC-TTEEEEEEESCH---HHH
T ss_pred             CCCcEEEEECCCcHHHHHHHHHHHcCcccCCCceEEEEEecCccccchhcchhhhhccccc-ccccCccccccc---hhh
Confidence            6778999999 59999887754 3311222    367788887643   233434333322 112223334443   345


Q ss_pred             CCCcceeehhhhc----cCChhHH----H----HHHHHHHhhccCCcEEEEee
Q 042119          200 LGEYDCIFLAALV----GMSKEEK----L----TILGHIRKYMKDGGILLVRS  240 (286)
Q Consensus       200 l~~fD~V~~aalv----g~~~~~k----~----~vl~~l~~~l~pgg~lv~r~  240 (286)
                      +.+.|+|++.+..    ||+..+-    .    ++.+.+.++-++++++++-+
T Consensus        98 ~~~aDvVvi~ag~~rkpg~tR~Dll~~N~~I~k~~~~~i~~~a~~~~~vlvv~  150 (175)
T d7mdha1          98 FEDVDWALLIGAKPRGPGMERAALLDINGQIFADQGKALNAVASKNVKVLVVG  150 (175)
T ss_dssp             TTTCSEEEECCCCCCCTTCCHHHHHHHHHHHHHHHHHHHHHHSCTTCEEEECS
T ss_pred             ccCCceEEEeeccCCCCCCcHHHHHHHHHHHHHHHHHHHHhhCCCCcEEEEec
Confidence            6788998876643    4443331    2    34444555555578676653

>d2gdza1 c.2.1.2 (A:3-256) 15-hydroxyprostaglandin dehydrogenase, PGDH {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 15-hydroxyprostaglandin dehydrogenase, PGDH
species: Human (Homo sapiens) [TaxId: 9606]

Probab=88.36  E-value=0.48  Score=39.33  Aligned_cols=78  Identities=13%  Similarity=0.152  Sum_probs=55.5

Q ss_pred             CCCEEEEeccCCChhh---HHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEccccchhh--------
Q 042119          130 QPKKVAFVGSGPMPLT---SIIMAKHHLTSTHFDNFDIDEAANDVARSIVASDAEFEGRMKFLTRDIMEVKE--------  198 (286)
Q Consensus       130 ~~~~VL~IG~G~lp~t---ai~lA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~g~l~~~i~f~~~D~~~~~~--------  198 (286)
                      .|+.++.-|++ .|+.   +..||+   .|++|+.+|++++.++.+.+.+.... -..++.++.+|+.+...        
T Consensus         2 ~GKvalITGas-~GIG~aia~~la~---~Ga~V~i~~r~~~~~~~~~~~l~~~~-~~~~~~~~~~Dv~~~~~v~~~~~~~   76 (254)
T d2gdza1           2 NGKVALVTGAA-QGIGRAFAEALLL---KGAKVALVDWNLEAGVQCKAALHEQF-EPQKTLFIQCDVADQQQLRDTFRKV   76 (254)
T ss_dssp             TTCEEEEETTT-SHHHHHHHHHHHH---TTCEEEEEESCHHHHHHHHHHHTTTS-CGGGEEEEECCTTSHHHHHHHHHHH
T ss_pred             CCCEEEEeCCC-CHHHHHHHHHHHH---CCCEEEEEECCHHHHHHHHHHHHHhc-CCCcEEEEEeecCCHHHHHHHHHHH
Confidence            46778888875 4554   344454   89999999999999888777665543 23689999999987331        


Q ss_pred             --cCCCcceeehhhhc
Q 042119          199 --QLGEYDCIFLAALV  212 (286)
Q Consensus       199 --~l~~fD~V~~aalv  212 (286)
                        .++..|+++..+.+
T Consensus        77 ~~~~G~iDilVnnAg~   92 (254)
T d2gdza1          77 VDHFGRLDILVNNAGV   92 (254)
T ss_dssp             HHHHSCCCEEEECCCC
T ss_pred             HHHcCCcCeecccccc
Confidence              34578988766654

>d1ae1a_ c.2.1.2 (A:) Tropinone reductase {Jimsonweed (Datura stramonium), I [TaxId: 4076]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Tropinone reductase
species: Jimsonweed (Datura stramonium), I [TaxId: 4076]

Probab=88.18  E-value=0.8  Score=38.07  Aligned_cols=74  Identities=11%  Similarity=0.064  Sum_probs=55.7

Q ss_pred             CCCEEEEeccCCChhh---HHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEccccchh---------
Q 042119          130 QPKKVAFVGSGPMPLT---SIIMAKHHLTSTHFDNFDIDEAANDVARSIVASDAEFEGRMKFLTRDIMEVK---------  197 (286)
Q Consensus       130 ~~~~VL~IG~G~lp~t---ai~lA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~g~l~~~i~f~~~D~~~~~---------  197 (286)
                      .+++||..|+. .|+.   +..|++   .|++|+..|++++.++.+.+.++..|   .++.++..|+.+..         
T Consensus         5 ~gK~alITGas-~GIG~aia~~la~---~G~~V~i~~r~~~~l~~~~~~~~~~~---~~~~~~~~D~s~~~~~~~~~~~~   77 (258)
T d1ae1a_           5 KGTTALVTGGS-KGIGYAIVEELAG---LGARVYTCSRNEKELDECLEIWREKG---LNVEGSVCDLLSRTERDKLMQTV   77 (258)
T ss_dssp             TTCEEEEESCS-SHHHHHHHHHHHH---TTCEEEEEESCHHHHHHHHHHHHHTT---CCEEEEECCTTCHHHHHHHHHHH
T ss_pred             CCCEEEEeCCC-CHHHHHHHHHHHH---CCCEEEEEECCHHHHHHHHHHHHhcC---CCceEEEeecCCHHHHHHHHHHH
Confidence            57899999986 4543   344555   89999999999999999988888877   57889999997643         


Q ss_pred             -hcC-CCcceeehhh
Q 042119          198 -EQL-GEYDCIFLAA  210 (286)
Q Consensus       198 -~~l-~~fD~V~~aa  210 (286)
                       ..+ +..|+++..+
T Consensus        78 ~~~~~g~idilinna   92 (258)
T d1ae1a_          78 AHVFDGKLNILVNNA   92 (258)
T ss_dssp             HHHTTSCCCEEEECC
T ss_pred             HHHhCCCcEEEeccc
Confidence             123 2467776544

>d1trba1 c.3.1.5 (A:1-118,A:245-316) Thioredoxin reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Thioredoxin reductase
species: Escherichia coli [TaxId: 562]

Probab=88.10  E-value=0.07  Score=42.13  Aligned_cols=35  Identities=20%  Similarity=0.205  Sum_probs=29.0

Q ss_pred             CCCCEEEEeccCCChhhHHHHHhhcCCCcEEEEEeCC
Q 042119          129 VQPKKVAFVGSGPMPLTSIIMAKHHLTSTHFDNFDID  165 (286)
Q Consensus       129 ~~~~~VL~IG~G~lp~tai~lA~~~~~g~~V~~iDid  165 (286)
                      +++.+|+.||+||.|+++...+.+  .|.+|+-||..
T Consensus         3 ~k~~dVvIIGGGpaGl~AA~~~ar--~g~~v~iie~~   37 (190)
T d1trba1           3 TKHSKLLILGSGPAGYTAAVYAAR--ANLQPVLITGM   37 (190)
T ss_dssp             EEEEEEEEECCSHHHHHHHHHHHT--TTCCCEEECCS
T ss_pred             CCCCcEEEECCCHHHHHHHHHHHH--cCCceEEEEee
Confidence            456799999999999998877763  78999999853

>d2bgka1 c.2.1.2 (A:11-278) Rhizome secoisolariciresinol dehydrogenase {Mayapple (Podophyllum peltatum) [TaxId: 35933]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Rhizome secoisolariciresinol dehydrogenase
species: Mayapple (Podophyllum peltatum) [TaxId: 35933]

Probab=87.95  E-value=0.52  Score=39.32  Aligned_cols=73  Identities=15%  Similarity=0.214  Sum_probs=50.7

Q ss_pred             CCCEEEEeccCCChhh---HHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEccccchh---------
Q 042119          130 QPKKVAFVGSGPMPLT---SIIMAKHHLTSTHFDNFDIDEAANDVARSIVASDAEFEGRMKFLTRDIMEVK---------  197 (286)
Q Consensus       130 ~~~~VL~IG~G~lp~t---ai~lA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~g~l~~~i~f~~~D~~~~~---------  197 (286)
                      .++.+|..|++ -|+.   +..||+   .|++|+.+|++++.++...+.+..    ..++.++..|+.+..         
T Consensus         5 ~gKvalITGas-~GIG~aia~~la~---~Ga~V~i~~r~~~~~~~~~~~l~~----~~~~~~~~~Dv~~~~~v~~~~~~~   76 (268)
T d2bgka1           5 QDKVAIITGGA-GGIGETTAKLFVR---YGAKVVIADIADDHGQKVCNNIGS----PDVISFVHCDVTKDEDVRNLVDTT   76 (268)
T ss_dssp             TTCEEEEESTT-SHHHHHHHHHHHH---TTCEEEEEESCHHHHHHHHHHHCC----TTTEEEEECCTTCHHHHHHHHHHH
T ss_pred             CCCEEEEeCCC-cHHHHHHHHHHHH---CCCEEEEEECCHHHHHHHHHHhcC----CCceEEEEccCCCHHHHHHHHHHH
Confidence            46888888876 4554   344555   799999999999887766555433    346889999997632         


Q ss_pred             -hcCCCcceeehhh
Q 042119          198 -EQLGEYDCIFLAA  210 (286)
Q Consensus       198 -~~l~~fD~V~~aa  210 (286)
                       ..++..|+++..+
T Consensus        77 ~~~~g~iD~lVnnA   90 (268)
T d2bgka1          77 IAKHGKLDIMFGNV   90 (268)
T ss_dssp             HHHHSCCCEEEECC
T ss_pred             HHHcCCcceecccc
Confidence             1335788877554

>d1b5qa1 c.3.1.2 (A:5-293,A:406-463) Polyamine oxidase {Maize (Zea mays) [TaxId: 4577]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Polyamine oxidase
species: Maize (Zea mays) [TaxId: 4577]

Probab=87.90  E-value=0.11  Score=40.39  Aligned_cols=32  Identities=13%  Similarity=0.214  Sum_probs=25.2

Q ss_pred             EEEEeccCCChhhHHHHHhhcCCCc-EEEEEeCCh
Q 042119          133 KVAFVGSGPMPLTSIIMAKHHLTST-HFDNFDIDE  166 (286)
Q Consensus       133 ~VL~IG~G~lp~tai~lA~~~~~g~-~V~~iDid~  166 (286)
                      +|+.||+|+.|+|+....++  .|. .|+.+|.++
T Consensus         2 ~V~IIGaG~aGL~aA~~L~~--~G~~~V~vlE~~~   34 (347)
T d1b5qa1           2 RVIVVGAGMSGISAAKRLSE--AGITDLLILEATD   34 (347)
T ss_dssp             CEEEECCBHHHHHHHHHHHH--TTCCCEEEECSSS
T ss_pred             CEEEECCcHHHHHHHHHHHh--CCCCcEEEEECCC
Confidence            59999999999987665442  675 699999874

>d1q7ba_ c.2.1.2 (A:) beta-keto acyl carrier protein reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Escherichia coli [TaxId: 562]

Probab=87.88  E-value=1.4  Score=36.05  Aligned_cols=101  Identities=15%  Similarity=0.144  Sum_probs=63.0

Q ss_pred             CCCEEEEeccCCChhh---HHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEccccchh---------
Q 042119          130 QPKKVAFVGSGPMPLT---SIIMAKHHLTSTHFDNFDIDEAANDVARSIVASDAEFEGRMKFLTRDIMEVK---------  197 (286)
Q Consensus       130 ~~~~VL~IG~G~lp~t---ai~lA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~g~l~~~i~f~~~D~~~~~---------  197 (286)
                      +++.++.-|++ .|+.   +..|++   .|++|+..|++++.++...+   ..+   .+..++..|+.+..         
T Consensus         3 ~gK~alITGas-~GIG~a~a~~l~~---~G~~Vv~~~r~~~~l~~~~~---~~~---~~~~~~~~Dv~~~~~v~~~~~~~   72 (243)
T d1q7ba_           3 EGKIALVTGAS-RGIGRAIAETLAA---RGAKVIGTATSENGAQAISD---YLG---ANGKGLMLNVTDPASIESVLEKI   72 (243)
T ss_dssp             TTCEEEESSCS-SHHHHHHHHHHHH---TTCEEEEEESSHHHHHHHHH---HHG---GGEEEEECCTTCHHHHHHHHHHH
T ss_pred             CCCEEEEeCCC-CHHHHHHHHHHHH---cCCEEEEEeCCHHHHHHHHH---HhC---CCCcEEEEEecCHHHhhhhhhhh
Confidence            46778887876 4553   344554   79999999999987665444   344   46788899987632         


Q ss_pred             -hcCCCcceeehhhhc-------cCChhH-----------HHHHHHHHHhhcc--CCcEEEEee
Q 042119          198 -EQLGEYDCIFLAALV-------GMSKEE-----------KLTILGHIRKYMK--DGGILLVRS  240 (286)
Q Consensus       198 -~~l~~fD~V~~aalv-------g~~~~~-----------k~~vl~~l~~~l~--pgg~lv~r~  240 (286)
                       ..++..|+++..+.+       ..+.++           -..+.+.+.+.|+  .+|.++.-+
T Consensus        73 ~~~~g~iDilVnnAg~~~~~~~~~~~~~~~~~~~~vNl~~~~~~~~~~~~~m~~~~~G~II~is  136 (243)
T d1q7ba_          73 RAEFGEVDILVNNAGITRDNLLMRMKDEEWNDIIETNLSSVFRLSKAVMRAMMKKRHGRIITIG  136 (243)
T ss_dssp             HHHTCSCSEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEEC
T ss_pred             hcccCCcceehhhhhhccccccccccccccccccceeechhhhhHHHHHHHHHHcCCCEeeeec
Confidence             234678887755532       112222           2234456667773  467776654

>d1ojta2 c.3.1.5 (A:276-400) Dihydrolipoamide dehydrogenase {Neisseria meningitidis [TaxId: 487]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Neisseria meningitidis [TaxId: 487]

Probab=87.81  E-value=0.34  Score=36.18  Aligned_cols=51  Identities=16%  Similarity=0.149  Sum_probs=38.7

Q ss_pred             CCCCCEEEEeccCCChhhHHHHHhhcCCCcEEEEEeC--------ChHHHHHHHHHHHhcC
Q 042119          128 VVQPKKVAFVGSGPMPLTSIIMAKHHLTSTHFDNFDI--------DEAANDVARSIVASDA  180 (286)
Q Consensus       128 ~~~~~~VL~IG~G~lp~tai~lA~~~~~g~~V~~iDi--------d~~ai~~Ar~~~~~~g  180 (286)
                      ...|++++.||+|..|+-...+.+  ..|.+||-++.        |+++.+..++.+++.|
T Consensus        23 ~~~p~~vvIiGgG~IG~E~A~~~~--~~G~~Vtive~~~~il~~~d~~~~~~l~~~l~~~g   81 (125)
T d1ojta2          23 KEVPGKLLIIGGGIIGLEMGTVYS--TLGSRLDVVEMMDGLMQGADRDLVKVWQKQNEYRF   81 (125)
T ss_dssp             CCCCSEEEEESCSHHHHHHHHHHH--HHTCEEEEECSSSSSSTTSCHHHHHHHHHHHGGGE
T ss_pred             cccCCeEEEECCCHHHHHHHHHhh--cCCCEEEEEEeeccccccchhhHHHHHHHHHHHcC
Confidence            367899999999987765444443  26999999965        5578788888877776

>d1w6ua_ c.2.1.2 (A:) 2,4-dienoyl-CoA reductase, mitochondrial (DECR) {Human (Homo sapiens), [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 2,4-dienoyl-CoA reductase, mitochondrial (DECR)
species: Human (Homo sapiens), [TaxId: 9606]

Probab=87.79  E-value=1  Score=37.65  Aligned_cols=74  Identities=12%  Similarity=0.133  Sum_probs=51.4

Q ss_pred             CCCEEEEeccCCChhh---HHHHHhhcCCCcEEEEEeCChHHHHHHHH-HHHhcCCCCCCeEEEEccccchhh-------
Q 042119          130 QPKKVAFVGSGPMPLT---SIIMAKHHLTSTHFDNFDIDEAANDVARS-IVASDAEFEGRMKFLTRDIMEVKE-------  198 (286)
Q Consensus       130 ~~~~VL~IG~G~lp~t---ai~lA~~~~~g~~V~~iDid~~ai~~Ar~-~~~~~g~l~~~i~f~~~D~~~~~~-------  198 (286)
                      ++++++.-|++ .|+.   +..|++   .|++|+.+|++++.++...+ +.++.|   .++.++.+|+.+...       
T Consensus        24 ~gK~alITGas-~GIG~aiA~~la~---~Ga~Vii~~r~~~~l~~~~~~l~~~~g---~~~~~~~~D~~~~~~v~~~~~~   96 (294)
T d1w6ua_          24 QGKVAFITGGG-TGLGKGMTTLLSS---LGAQCVIASRKMDVLKATAEQISSQTG---NKVHAIQCDVRDPDMVQNTVSE   96 (294)
T ss_dssp             TTCEEEEETTT-SHHHHHHHHHHHH---TTCEEEEEESCHHHHHHHHHHHHHHHS---SCEEEEECCTTCHHHHHHHHHH
T ss_pred             CCCEEEEeCCC-CHHHHHHHHHHHH---cCCEEEEEECCHHHHHHHHHHHHHhcC---CceEEEEecccChHHHHHHhhh
Confidence            46888888865 4543   344555   89999999999988766554 445555   578899999876332       


Q ss_pred             ---cCCCcceeehhh
Q 042119          199 ---QLGEYDCIFLAA  210 (286)
Q Consensus       199 ---~l~~fD~V~~aa  210 (286)
                         ..+..|+++..+
T Consensus        97 ~~~~~g~iDilvnnA  111 (294)
T d1w6ua_          97 LIKVAGHPNIVINNA  111 (294)
T ss_dssp             HHHHTCSCSEEEECC
T ss_pred             hhhhccccchhhhhh
Confidence               345688776554

>d1ulua_ c.2.1.2 (A:) Enoyl-ACP reductase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Enoyl-ACP reductase
species: Thermus thermophilus [TaxId: 274]

Probab=87.37  E-value=0.73  Score=37.88  Aligned_cols=104  Identities=12%  Similarity=0.191  Sum_probs=67.7

Q ss_pred             CCCEEEEeccC---CChh-hHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEccccchhh-------
Q 042119          130 QPKKVAFVGSG---PMPL-TSIIMAKHHLTSTHFDNFDIDEAANDVARSIVASDAEFEGRMKFLTRDIMEVKE-------  198 (286)
Q Consensus       130 ~~~~VL~IG~G---~lp~-tai~lA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~g~l~~~i~f~~~D~~~~~~-------  198 (286)
                      ++++++.-|++   .+|. .+..|++   .|++|+..|++++..+.+.+.....|    +..++.+|+.+...       
T Consensus         7 ~gK~alITGas~~~GIG~aiA~~la~---~Ga~V~i~~~~~~~~~~~~~~~~~~~----~~~~~~~D~~~~~~v~~~~~~   79 (256)
T d1ulua_           7 SGKKALVMGVTNQRSLGFAIAAKLKE---AGAEVALSYQAERLRPEAEKLAEALG----GALLFRADVTQDEELDALFAG   79 (256)
T ss_dssp             TTCEEEEESCCCSSSHHHHHHHHHHH---TTCEEEEEESSGGGHHHHHHHHHHTT----CCEEEECCTTCHHHHHHHHHH
T ss_pred             CCCEEEEECCCCCchHHHHHHHHHHH---CCCEEEEEeCcHHHHHHHHHhhhccC----cccccccccCCHHHHHHHHHH
Confidence            57889999853   2554 5666777   79999999999988888888776655    46788899876321       


Q ss_pred             ---cCCCcceeehhhhc-----------cCChhHH-----------HHHHHHHHhhccCCcEEEEee
Q 042119          199 ---QLGEYDCIFLAALV-----------GMSKEEK-----------LTILGHIRKYMKDGGILLVRS  240 (286)
Q Consensus       199 ---~l~~fD~V~~aalv-----------g~~~~~k-----------~~vl~~l~~~l~pgg~lv~r~  240 (286)
                         ..+..|+++..+.+           ..+.++.           ..+.+...+.|+.+|.++.-+
T Consensus        80 ~~~~~g~iDilVnnag~~~~~~~~~~~~~~~~~~~~~~~~vn~~~~~~~~~~~~~~~~~~G~Iv~is  146 (256)
T d1ulua_          80 VKEAFGGLDYLVHAIAFAPREAMEGRYIDTRRQDWLLALEVSAYSLVAVARRAEPLLREGGGIVTLT  146 (256)
T ss_dssp             HHHHHSSEEEEEECCCCCCHHHHSSCGGGCCHHHHHHHHHHHTHHHHHHHHHHTTTEEEEEEEEEEE
T ss_pred             HHHhcCCceEEEeccccccccccccchhhhhhhhhhHhhhhhHHHHHHHHHHHHHHhccCCEEEEEe
Confidence               23567876643321           1111221           223445667888888877654

>d2a4ka1 c.2.1.2 (A:2-242) beta-keto acyl carrier protein reductase {Thermus thermophilus, TTHB020 [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Thermus thermophilus, TTHB020 [TaxId: 274]

Probab=87.32  E-value=3.4  Score=33.55  Aligned_cols=105  Identities=15%  Similarity=0.188  Sum_probs=67.2

Q ss_pred             CCCEEEEeccCCChhhHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEccccchh----------hc
Q 042119          130 QPKKVAFVGSGPMPLTSIIMAKHHLTSTHFDNFDIDEAANDVARSIVASDAEFEGRMKFLTRDIMEVK----------EQ  199 (286)
Q Consensus       130 ~~~~VL~IG~G~lp~tai~lA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~g~l~~~i~f~~~D~~~~~----------~~  199 (286)
                      .++.++..|++ .|+..-...+.+..|++|+..+++.+.++   +..+.+|   .++.++.+|+.+..          ..
T Consensus         4 ~gK~alItGas-~GIG~aia~~l~~~G~~V~~~~r~~~~~~---~~~~~~~---~~~~~~~~Dls~~~~i~~~~~~i~~~   76 (241)
T d2a4ka1           4 SGKTILVTGAA-SGIGRAALDLFAREGASLVAVDREERLLA---EAVAALE---AEAIAVVADVSDPKAVEAVFAEALEE   76 (241)
T ss_dssp             TTCEEEEESTT-SHHHHHHHHHHHHTTCEEEEEESCHHHHH---HHHHTCC---SSEEEEECCTTSHHHHHHHHHHHHHH
T ss_pred             CCCEEEEeCCC-CHHHHHHHHHHHHCCCEEEEEECCHHHHH---HHHHHcC---CceEEEEecCCCHHHHHHHHHHHHHH
Confidence            57888988987 46543322211238999999999998664   4455555   68899999987632          12


Q ss_pred             CCCcceeehhhhccC-------ChhH-----------HHHHHHHHHhhccCCcEEEEeec
Q 042119          200 LGEYDCIFLAALVGM-------SKEE-----------KLTILGHIRKYMKDGGILLVRSA  241 (286)
Q Consensus       200 l~~fD~V~~aalvg~-------~~~~-----------k~~vl~~l~~~l~pgg~lv~r~~  241 (286)
                      ++..|+++..+....       +.++           ...+.+...+.|+.++.+++-+.
T Consensus        77 ~g~iDiLinnAg~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~k~~~~~~~~~~~i~~~ss  136 (241)
T d2a4ka1          77 FGRLHGVAHFAGVAHSALSWNLPLEAWEKVLRVNLTGSFLVARKAGEVLEEGGSLVLTGS  136 (241)
T ss_dssp             HSCCCEEEEGGGGTTTTC----CHHHHHHHHHHHHHHHHHHHHHHHHHCCTTCEEEEECC
T ss_pred             hCCccEeccccccccccchhhhhccccccccccccccccccccccccccccccceeeccc
Confidence            356887766543211       1111           22345667888888888777653

>d1zk4a1 c.2.1.2 (A:1-251) R-specific alcohol dehydrogenase {Lactobacillus brevis [TaxId: 1580]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: R-specific alcohol dehydrogenase
species: Lactobacillus brevis [TaxId: 1580]

Probab=87.21  E-value=1  Score=37.22  Aligned_cols=74  Identities=11%  Similarity=0.134  Sum_probs=52.3

Q ss_pred             CCCEEEEeccCCChhh---HHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEccccchh---------
Q 042119          130 QPKKVAFVGSGPMPLT---SIIMAKHHLTSTHFDNFDIDEAANDVARSIVASDAEFEGRMKFLTRDIMEVK---------  197 (286)
Q Consensus       130 ~~~~VL~IG~G~lp~t---ai~lA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~g~l~~~i~f~~~D~~~~~---------  197 (286)
                      +++.++.-|++ .|+.   +..||+   .|++|+..|++++.++.+.+.+.    ...++.++.+|+.+..         
T Consensus         5 ~gK~alVTGas-~GIG~aia~~la~---~Ga~V~~~~r~~~~~~~~~~~~~----~~~~~~~~~~Dv~~~~~v~~~~~~~   76 (251)
T d1zk4a1           5 DGKVAIITGGT-LGIGLAIATKFVE---EGAKVMITGRHSDVGEKAAKSVG----TPDQIQFFQHDSSDEDGWTKLFDAT   76 (251)
T ss_dssp             TTCEEEETTTT-SHHHHHHHHHHHH---TTCEEEEEESCHHHHHHHHHHHC----CTTTEEEEECCTTCHHHHHHHHHHH
T ss_pred             CCCEEEEeCCC-CHHHHHHHHHHHH---CCCEEEEEECCHHHHHHHHHHhC----CCCcEEEEEccCCCHHHHHHHHHHH
Confidence            46788888875 4553   445555   79999999999988877666543    2358999999998632         


Q ss_pred             -hcCCCcceeehhhh
Q 042119          198 -EQLGEYDCIFLAAL  211 (286)
Q Consensus       198 -~~l~~fD~V~~aal  211 (286)
                       ..++..|+++..+.
T Consensus        77 ~~~~G~iDiLVnnAg   91 (251)
T d1zk4a1          77 EKAFGPVSTLVNNAG   91 (251)
T ss_dssp             HHHHSSCCEEEECCC
T ss_pred             HHHhCCceEEEeccc
Confidence             13457888775553

>d1j4aa1 c.2.1.4 (A:104-300) D-lactate dehydrogenase {Lactobacillus helveticus [TaxId: 1587]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: D-lactate dehydrogenase
species: Lactobacillus helveticus [TaxId: 1587]

Probab=87.16  E-value=0.13  Score=41.86  Aligned_cols=90  Identities=13%  Similarity=0.089  Sum_probs=55.3

Q ss_pred             CCCEEEEeccCCChhhHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEccccchhhcCCCcceeehh
Q 042119          130 QPKKVAFVGSGPMPLTSIIMAKHHLTSTHFDNFDIDEAANDVARSIVASDAEFEGRMKFLTRDIMEVKEQLGEYDCIFLA  209 (286)
Q Consensus       130 ~~~~VL~IG~G~lp~tai~lA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~g~l~~~i~f~~~D~~~~~~~l~~fD~V~~a  209 (286)
                      .+++|..||.|.+|-....+++  ..|++|.++|.......      ...+     ..  ..+   +..-+...|+|.++
T Consensus        42 ~gk~vgIiG~G~IG~~va~~l~--~fg~~V~~~d~~~~~~~------~~~~-----~~--~~~---l~~~l~~sDii~~~  103 (197)
T d1j4aa1          42 RDQVVGVVGTGHIGQVFMQIME--GFGAKVITYDIFRNPEL------EKKG-----YY--VDS---LDDLYKQADVISLH  103 (197)
T ss_dssp             GGSEEEEECCSHHHHHHHHHHH--HTTCEEEEECSSCCHHH------HHTT-----CB--CSC---HHHHHHHCSEEEEC
T ss_pred             cCCeEEEecccccchhHHHhHh--hhcccccccCccccccc------ccce-----ee--ecc---cccccccccccccc
Confidence            4789999999999988777777  37999999998754311      1122     11  122   22233467988866


Q ss_pred             hhccCChhHHHHHHHHHHhhccCCcEEEEe
Q 042119          210 ALVGMSKEEKLTILGHIRKYMKDGGILLVR  239 (286)
Q Consensus       210 alvg~~~~~k~~vl~~l~~~l~pgg~lv~r  239 (286)
                      .-.  +.+.+.-+=++..+.|++|+++|--
T Consensus       104 ~pl--t~~T~~li~~~~l~~mk~~a~lIN~  131 (197)
T d1j4aa1         104 VPD--VPANVHMINDESIAKMKQDVVIVNV  131 (197)
T ss_dssp             SCC--CGGGTTCBSHHHHHHSCTTEEEEEC
T ss_pred             CCc--cccccccccHHHHhhhCCccEEEec
Confidence            421  2222222224456788888777654

>d1m6ia2 c.3.1.5 (A:264-400) Apoptosis-inducing factor (AIF) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Apoptosis-inducing factor (AIF)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=87.09  E-value=0.54  Score=35.27  Aligned_cols=51  Identities=12%  Similarity=0.123  Sum_probs=33.2

Q ss_pred             CCCEEEEeccCCChhhH-HHHHhh-cCCCcEEEEEeC---------ChHHHHHHHHHHHhcC
Q 042119          130 QPKKVAFVGSGPMPLTS-IIMAKH-HLTSTHFDNFDI---------DEAANDVARSIVASDA  180 (286)
Q Consensus       130 ~~~~VL~IG~G~lp~ta-i~lA~~-~~~g~~V~~iDi---------d~~ai~~Ar~~~~~~g  180 (286)
                      .+++|+.||+|+.|+-. ..+++. ...|.+|+-++.         +++..++.++.+++.|
T Consensus        36 ~~k~i~IvGgG~~G~E~A~~l~~~~~~~g~~Vt~i~~~~~~l~~~~~~~~~~~~~~~l~~~G   97 (137)
T d1m6ia2          36 EVKSITIIGGGFLGSELACALGRKARALGTEVIQLFPEKGNMGKILPEYLSNWTMEKVRREG   97 (137)
T ss_dssp             HCSEEEEECCSHHHHHHHHHHHHHHHHHTCEEEEECSSSSTTTTTSCHHHHHHHHHHHHTTT
T ss_pred             cCCEEEEECCCHHHHHHHHHHHHHHHhcCCEEEEecccccCCcccCCHHHHHHHHHHHHhCC
Confidence            46899999999766432 222221 125789998875         4455567777777777

>d3c96a1 c.3.1.2 (A:4-182,A:294-402) Monooxygenase PhzS {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Monooxygenase PhzS
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=86.80  E-value=0.2  Score=40.63  Aligned_cols=35  Identities=11%  Similarity=0.238  Sum_probs=27.5

Q ss_pred             CCEEEEeccCCChhhHHHHHhhcCCCc-EEEEEeCChH
Q 042119          131 PKKVAFVGSGPMPLTSIIMAKHHLTST-HFDNFDIDEA  167 (286)
Q Consensus       131 ~~~VL~IG~G~lp~tai~lA~~~~~g~-~V~~iDid~~  167 (286)
                      |.+|+.||+||-|+++..+.++  .|. .|+.+|.+++
T Consensus         1 ~~~V~IvGaG~aGl~~A~~L~~--~Gi~~V~V~Er~~~   36 (288)
T d3c96a1           1 PIDILIAGAGIGGLSCALALHQ--AGIGKVTLLESSSE   36 (288)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHH--TTCSEEEEEESSSS
T ss_pred             CCEEEEECcCHHHHHHHHHHHh--CCCCeEEEEeCCCC
Confidence            5799999999999987666553  674 8888888764

>d1gesa1 c.3.1.5 (A:3-146,A:263-335) Glutathione reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Escherichia coli [TaxId: 562]

Probab=86.59  E-value=0.16  Score=40.44  Aligned_cols=32  Identities=19%  Similarity=0.170  Sum_probs=27.8

Q ss_pred             EEEEeccCCChhhHHHHHhhcCCCcEEEEEeCCh
Q 042119          133 KVAFVGSGPMPLTSIIMAKHHLTSTHFDNFDIDE  166 (286)
Q Consensus       133 ~VL~IG~G~lp~tai~lA~~~~~g~~V~~iDid~  166 (286)
                      .|+.||+||.|+++...|.+  .|.+|+.||.++
T Consensus         4 DvvVIG~G~aG~~aA~~a~~--~G~kV~iiE~~~   35 (217)
T d1gesa1           4 DYIAIGGGSGGIASINRAAM--YGQKCALIEAKE   35 (217)
T ss_dssp             EEEEECCSHHHHHHHHHHHT--TTCCEEEEESSC
T ss_pred             CEEEECCCHHHHHHHHHHHH--CCCEEEEEeccC
Confidence            48999999999999888874  789999999763

>d1y7ta1 c.2.1.5 (A:0-153) Malate dehydrogenase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Thermus thermophilus [TaxId: 274]

Probab=86.57  E-value=2.1  Score=32.63  Aligned_cols=109  Identities=17%  Similarity=0.150  Sum_probs=55.5

Q ss_pred             CCCCEEEEecc-CCChhhHHHHHhh-cCCC----cEEEEEeCChH--HHHHHHHHHHhcCCCCCCeEEEEccccchhhcC
Q 042119          129 VQPKKVAFVGS-GPMPLTSIIMAKH-HLTS----THFDNFDIDEA--ANDVARSIVASDAEFEGRMKFLTRDIMEVKEQL  200 (286)
Q Consensus       129 ~~~~~VL~IG~-G~lp~tai~lA~~-~~~g----~~V~~iDid~~--ai~~Ar~~~~~~g~l~~~i~f~~~D~~~~~~~l  200 (286)
                      +.|.||..||+ |..|.+..++-.. ..-+    .....+|.+..  ..+..........  ....+-.... .+...++
T Consensus         2 ~~p~KV~IiGA~G~VG~~~a~~l~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~-~~~~~~~   78 (154)
T d1y7ta1           2 KAPVRVAVTGAAGQIGYSLLFRIAAGEMLGKDQPVILQLLEIPQAMKALEGVVMELEDCA--FPLLAGLEAT-DDPKVAF   78 (154)
T ss_dssp             CCCEEEEESSTTSHHHHHHHHHHHTTTTTCTTCCEEEEEECCGGGHHHHHHHHHHHHTTT--CTTEEEEEEE-SCHHHHT
T ss_pred             CCCCEEEEECCCCHHHHHHHHHHHhccccccccchhHhHhccccchhhHcCchhhhhccc--cccccccccC-Cchhhhc
Confidence            57889999995 9998887664431 1111    22344455433  3332222223222  1223222222 1123456


Q ss_pred             CCcceeehhhhc----cCChhH----HHH----HHHHHHhhccCCcEEEEee
Q 042119          201 GEYDCIFLAALV----GMSKEE----KLT----ILGHIRKYMKDGGILLVRS  240 (286)
Q Consensus       201 ~~fD~V~~aalv----g~~~~~----k~~----vl~~l~~~l~pgg~lv~r~  240 (286)
                      .+-|+|++.+..    |++..+    -.+    +...+.+.-.|++.+++-+
T Consensus        79 ~~advViitaG~~~~pg~~r~dl~~~N~~i~~~~~~~i~k~a~~~~~vivvs  130 (154)
T d1y7ta1          79 KDADYALLVGAAPRKAGMERRDLLQVNGKIFTEQGRALAEVAKKDVKVLVVG  130 (154)
T ss_dssp             TTCSEEEECCCCCCCTTCCHHHHHHHHHHHHHHHHHHHHHHSCTTCEEEECS
T ss_pred             ccccEEEeecCcCCCCCCcHHHHHHHHHHHHHHHHHHHHHhCCCCcEEEEec
Confidence            789999877643    444322    123    4444555545688776644

>d1mx3a1 c.2.1.4 (A:126-318) Transcription corepressor CtbP {Human (Homo sapiens), Ctbp1 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Transcription corepressor CtbP
species: Human (Homo sapiens), Ctbp1 [TaxId: 9606]

Probab=86.56  E-value=0.11  Score=42.32  Aligned_cols=93  Identities=15%  Similarity=0.208  Sum_probs=57.7

Q ss_pred             CCCCEEEEeccCCChhhHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEccccchhhcCCCcceeeh
Q 042119          129 VQPKKVAFVGSGPMPLTSIIMAKHHLTSTHFDNFDIDEAANDVARSIVASDAEFEGRMKFLTRDIMEVKEQLGEYDCIFL  208 (286)
Q Consensus       129 ~~~~~VL~IG~G~lp~tai~lA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~g~l~~~i~f~~~D~~~~~~~l~~fD~V~~  208 (286)
                      -.+++|..||+|.+|-....+++  ..|.+|.++|.....     ......+     +.. ..+..++   +...|+|.+
T Consensus        47 L~gktvgIiG~G~IG~~va~~l~--~fg~~v~~~d~~~~~-----~~~~~~~-----~~~-~~~l~~l---l~~sD~i~~  110 (193)
T d1mx3a1          47 IRGETLGIIGLGRVGQAVALRAK--AFGFNVLFYDPYLSD-----GVERALG-----LQR-VSTLQDL---LFHSDCVTL  110 (193)
T ss_dssp             CTTCEEEEECCSHHHHHHHHHHH--TTTCEEEEECTTSCT-----THHHHHT-----CEE-CSSHHHH---HHHCSEEEE
T ss_pred             eeCceEEEeccccccccceeeee--ccccceeeccCcccc-----cchhhhc-----ccc-ccchhhc---cccCCEEEE
Confidence            46789999999999988777777  479999999987543     1122233     111 1233232   245788876


Q ss_pred             hhhccCChhHHHHHHHHHHhhccCCcEEEEe
Q 042119          209 AALVGMSKEEKLTILGHIRKYMKDGGILLVR  239 (286)
Q Consensus       209 aalvg~~~~~k~~vl~~l~~~l~pgg~lv~r  239 (286)
                      +.-.  +.+.+.=+=....+.||||++||--
T Consensus       111 ~~pl--t~~T~~li~~~~l~~mk~~a~lIN~  139 (193)
T d1mx3a1         111 HCGL--NEHNHHLINDFTVKQMRQGAFLVNT  139 (193)
T ss_dssp             CCCC--CTTCTTSBSHHHHTTSCTTEEEEEC
T ss_pred             eecc--cccchhhhhHHHHhccCCCCeEEec
Confidence            5422  2233322233566789999887764

>d2pd4a1 c.2.1.2 (A:2-275) Enoyl-ACP reductase {Helicobacter pylori [TaxId: 210]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Enoyl-ACP reductase
species: Helicobacter pylori [TaxId: 210]

Probab=86.37  E-value=1.9  Score=35.31  Aligned_cols=107  Identities=16%  Similarity=0.192  Sum_probs=65.4

Q ss_pred             CCCEEEEecc-C--CChh-hHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEccccchh--------
Q 042119          130 QPKKVAFVGS-G--PMPL-TSIIMAKHHLTSTHFDNFDIDEAANDVARSIVASDAEFEGRMKFLTRDIMEVK--------  197 (286)
Q Consensus       130 ~~~~VL~IG~-G--~lp~-tai~lA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~g~l~~~i~f~~~D~~~~~--------  197 (286)
                      +++++|..|+ |  .+|. .+..|++   .|++|+..|++++..+.++++....+    ...+...|+.+..        
T Consensus         4 ~gK~alITGaag~~GIG~AiA~~la~---~Ga~V~i~~r~~~~~~~~~~l~~~~~----~~~~~~~d~~~~~~~~~~~~~   76 (274)
T d2pd4a1           4 KGKKGLIVGVANNKSIAYGIAQSCFN---QGATLAFTYLNESLEKRVRPIAQELN----SPYVYELDVSKEEHFKSLYNS   76 (274)
T ss_dssp             TTCEEEEECCCSTTSHHHHHHHHHHT---TTCEEEEEESSTTTHHHHHHHHHHTT----CCCEEECCTTCHHHHHHHHHH
T ss_pred             CCCEEEEECCCCCcHHHHHHHHHHHH---CCCEEEEEeCCHHHHHHHHHHHhhCC----ceeEeeecccchhhHHHHHHH
Confidence            5889999994 2  1554 3444554   89999999999887788887766544    3556677776422        


Q ss_pred             --hcCCCcceeehhhhcc-------CChh---------------HHHHHHHHHHhhccCCcEEEEeecCc
Q 042119          198 --EQLGEYDCIFLAALVG-------MSKE---------------EKLTILGHIRKYMKDGGILLVRSAKG  243 (286)
Q Consensus       198 --~~l~~fD~V~~aalvg-------~~~~---------------~k~~vl~~l~~~l~pgg~lv~r~~~g  243 (286)
                        ...+..|+++..+...       ....               -.........+..++|+.++..+..+
T Consensus        77 ~~~~~g~id~lV~nag~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~~~  146 (274)
T d2pd4a1          77 VKKDLGSLDFIVHSVAFAPKEALEGSLLETSKSAFNTAMEISVYSLIELTNTLKPLLNNGASVLTLSYLG  146 (274)
T ss_dssp             HHHHTSCEEEEEECCCCCCGGGGSSCGGGCCHHHHHHHHHHHTHHHHHHHHHHGGGEEEEEEEEEEECGG
T ss_pred             HHHHcCCCCeEEeecccccccccccccccccchhhhhhhccccccccccccccccccccCcceeeecccc
Confidence              1335667665443210       0000               12344555566777888777766444

>d2bi7a1 c.4.1.3 (A:2-247,A:317-384) UDP-galactopyranose mutase, N-terminal domain {Klebsiella pneumoniae [TaxId: 573]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: UDP-galactopyranose mutase, N-terminal domain
domain: UDP-galactopyranose mutase, N-terminal domain
species: Klebsiella pneumoniae [TaxId: 573]

Probab=86.26  E-value=0.25  Score=42.50  Aligned_cols=35  Identities=17%  Similarity=0.096  Sum_probs=29.3

Q ss_pred             CCEEEEeccCCChhhHHHHHhhcCCCcEEEEEeCChH
Q 042119          131 PKKVAFVGSGPMPLTSIIMAKHHLTSTHFDNFDIDEA  167 (286)
Q Consensus       131 ~~~VL~IG~G~lp~tai~lA~~~~~g~~V~~iDid~~  167 (286)
                      .++|+.||||+.|+++....+  ..|.+|+.+|.++.
T Consensus         2 ~KKI~IIGaG~sGL~aA~~L~--k~G~~V~viEk~~~   36 (314)
T d2bi7a1           2 SKKILIVGAGFSGAVIGRQLA--EKGHQVHIIDQRDH   36 (314)
T ss_dssp             CCEEEEECCSHHHHHHHHHHH--TTTCEEEEEESSSS
T ss_pred             CCEEEEECCcHHHHHHHHHHH--hCCCCEEEEECCCC
Confidence            579999999999998887766  26899999998853

>d1g60a_ c.66.1.11 (A:) Methyltransferase mboII {Moraxella bovis [TaxId: 476]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Type II DNA methylase
domain: Methyltransferase mboII
species: Moraxella bovis [TaxId: 476]

Probab=85.99  E-value=0.78  Score=37.01  Aligned_cols=46  Identities=20%  Similarity=0.122  Sum_probs=35.8

Q ss_pred             CCCCCEEEEeccCCChhhHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHH
Q 042119          128 VVQPKKVAFVGSGPMPLTSIIMAKHHLTSTHFDNFDIDEAANDVARSIVA  177 (286)
Q Consensus       128 ~~~~~~VL~IG~G~lp~tai~lA~~~~~g~~V~~iDid~~ai~~Ar~~~~  177 (286)
                      ..++..|||-=+|. |.|++. |.  ..|-+.+|+|+|++.++.|+++++
T Consensus       210 s~~gd~VlDpF~GS-GTT~~a-a~--~~~R~~ig~El~~~y~~~a~~Rl~  255 (256)
T d1g60a_         210 SNPNDLVLDCFMGS-GTTAIV-AK--KLGRNFIGCDMNAEYVNQANFVLN  255 (256)
T ss_dssp             CCTTCEEEESSCTT-CHHHHH-HH--HTTCEEEEEESCHHHHHHHHHHHH
T ss_pred             CCCCCEEEECCCCc-hHHHHH-HH--HcCCeEEEEeCCHHHHHHHHHHHc
Confidence            36789999876663 445443 33  378999999999999999999875

>d1h5qa_ c.2.1.2 (A:) Mannitol dehydrogenase {Mushroom (Agaricus bisporus) [TaxId: 5341]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Mannitol dehydrogenase
species: Mushroom (Agaricus bisporus) [TaxId: 5341]

Probab=85.81  E-value=1.1  Score=37.09  Aligned_cols=75  Identities=12%  Similarity=0.073  Sum_probs=52.5

Q ss_pred             CCCEEEEeccCCChhh---HHHHHhhcCCCcEEEEEeCChHHHHH-HHHHHHhcCCCCCCeEEEEccccchh--------
Q 042119          130 QPKKVAFVGSGPMPLT---SIIMAKHHLTSTHFDNFDIDEAANDV-ARSIVASDAEFEGRMKFLTRDIMEVK--------  197 (286)
Q Consensus       130 ~~~~VL~IG~G~lp~t---ai~lA~~~~~g~~V~~iDid~~ai~~-Ar~~~~~~g~l~~~i~f~~~D~~~~~--------  197 (286)
                      .++++|.-|++ .|+.   +..||+   .|++|+.+|++++..+. ++++.+..|   .++.++.+|+.+..        
T Consensus         8 ~gK~alITGas-~GIG~aia~~la~---~Ga~V~i~~r~~~~~~~~~~~~~~~~g---~~~~~~~~Dv~~~~~v~~~~~~   80 (260)
T d1h5qa_           8 VNKTIIVTGGN-RGIGLAFTRAVAA---AGANVAVIYRSAADAVEVTEKVGKEFG---VKTKAYQCDVSNTDIVTKTIQQ   80 (260)
T ss_dssp             TTEEEEEETTT-SHHHHHHHHHHHH---TTEEEEEEESSCTTHHHHHHHHHHHHT---CCEEEEECCTTCHHHHHHHHHH
T ss_pred             CCCEEEEeCCC-CHHHHHHHHHHHH---CCCEEEEEECCHHHHHHHHHHHHHHhC---CceEEEEccCCCHHHHHHHHHH
Confidence            46788888876 4654   445555   89999999999876654 445555666   57899999997633        


Q ss_pred             --hcCCCcceeehhhh
Q 042119          198 --EQLGEYDCIFLAAL  211 (286)
Q Consensus       198 --~~l~~fD~V~~aal  211 (286)
                        ...+..|+++..+.
T Consensus        81 ~~~~~g~iDilVnnAg   96 (260)
T d1h5qa_          81 IDADLGPISGLIANAG   96 (260)
T ss_dssp             HHHHSCSEEEEEECCC
T ss_pred             HHHHhCCCcEeccccc
Confidence              23467887765553

>d1nffa_ c.2.1.2 (A:) Putative oxidoreductase Rv2002 {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Putative oxidoreductase Rv2002
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=85.75  E-value=1.1  Score=37.00  Aligned_cols=72  Identities=14%  Similarity=0.126  Sum_probs=50.2

Q ss_pred             CCCEEEEeccCCChh---hHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEccccchhh--------
Q 042119          130 QPKKVAFVGSGPMPL---TSIIMAKHHLTSTHFDNFDIDEAANDVARSIVASDAEFEGRMKFLTRDIMEVKE--------  198 (286)
Q Consensus       130 ~~~~VL~IG~G~lp~---tai~lA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~g~l~~~i~f~~~D~~~~~~--------  198 (286)
                      +++.++.-|++ .|+   .+..|++   .|++|+..|++++.++.   +.+..+   ++..++.+|+.+...        
T Consensus         5 ~gK~alITGas-~GIG~aia~~la~---~G~~V~~~~r~~~~~~~---~~~~~~---~~~~~~~~Dv~~~~~v~~~~~~~   74 (244)
T d1nffa_           5 TGKVALVSGGA-RGMGASHVRAMVA---EGAKVVFGDILDEEGKA---MAAELA---DAARYVHLDVTQPAQWKAAVDTA   74 (244)
T ss_dssp             TTCEEEEETTT-SHHHHHHHHHHHH---TTCEEEEEESCHHHHHH---HHHHTG---GGEEEEECCTTCHHHHHHHHHHH
T ss_pred             CCCEEEEeCCC-CHHHHHHHHHHHH---CCCEEEEEECCHHHHHH---HHHHhh---CcceEEEeecCCHHHHHHHHHHH
Confidence            56788888886 465   3455666   89999999999977654   444444   578899999876331        


Q ss_pred             --cCCCcceeehhhh
Q 042119          199 --QLGEYDCIFLAAL  211 (286)
Q Consensus       199 --~l~~fD~V~~aal  211 (286)
                        ..+..|+++..+-
T Consensus        75 ~~~~g~idilinnAG   89 (244)
T d1nffa_          75 VTAFGGLHVLVNNAG   89 (244)
T ss_dssp             HHHHSCCCEEEECCC
T ss_pred             HHHhCCCeEEEECCc
Confidence              2356788775553

>d1h6va1 c.3.1.5 (A:10-170,A:293-366) Mammalian thioredoxin reductase {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Mammalian thioredoxin reductase
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=85.58  E-value=0.18  Score=40.61  Aligned_cols=31  Identities=16%  Similarity=0.180  Sum_probs=26.6

Q ss_pred             EEEEeccCCChhhHHHHHhhcCCCcEEEEEeCC
Q 042119          133 KVAFVGSGPMPLTSIIMAKHHLTSTHFDNFDID  165 (286)
Q Consensus       133 ~VL~IG~G~lp~tai~lA~~~~~g~~V~~iDid  165 (286)
                      .|+.||+||.|+++..-|.+  .|.+|..||..
T Consensus         5 DviVIG~GpaGl~aA~~aa~--~G~kV~viE~~   35 (235)
T d1h6va1           5 DLIIIGGGSGGLAAAKEAAK--FDKKVMVLDFV   35 (235)
T ss_dssp             EEEEECCSHHHHHHHHHHGG--GCCCEEEECCC
T ss_pred             CEEEECCCHHHHHHHHHHHH--CCCeEEEEecc
Confidence            58999999999998887774  79999999954

>d2dw4a2 c.3.1.2 (A:274-654,A:764-831) Lysine-specific histone demethylase 1, LSD1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Lysine-specific histone demethylase 1, LSD1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=85.54  E-value=0.29  Score=39.52  Aligned_cols=35  Identities=17%  Similarity=0.189  Sum_probs=28.7

Q ss_pred             CCCCEEEEeccCCChhhHHHHHhhcCCCcEEEEEeCC
Q 042119          129 VQPKKVAFVGSGPMPLTSIIMAKHHLTSTHFDNFDID  165 (286)
Q Consensus       129 ~~~~~VL~IG~G~lp~tai~lA~~~~~g~~V~~iDid  165 (286)
                      ++..||+.||+|.-|++|....++  .|.+|+.+|-+
T Consensus         3 ~~~~kViVIGaG~aGL~aA~~L~~--~G~~V~VlEa~   37 (449)
T d2dw4a2           3 KKTGKVIIIGSGVSGLAAARQLQS--FGMDVTLLEAR   37 (449)
T ss_dssp             SCCCEEEEECCBHHHHHHHHHHHH--TTCEEEEECSS
T ss_pred             CCCCcEEEECCCHHHHHHHHHHHh--CCCCEEEEeCC
Confidence            456789999999999988775553  68899999876

>d1x1ta1 c.2.1.2 (A:1-260) D(-)-3-hydroxybutyrate dehydrogenase {Pseudomonas fragi [TaxId: 296]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: D(-)-3-hydroxybutyrate dehydrogenase
species: Pseudomonas fragi [TaxId: 296]

Probab=85.47  E-value=0.91  Score=37.56  Aligned_cols=104  Identities=15%  Similarity=0.098  Sum_probs=65.0

Q ss_pred             CCCEEEEeccCCChh---hHHHHHhhcCCCcEEEEEeCC-hHHHHHHHHHHH-hcCCCCCCeEEEEccccchhh------
Q 042119          130 QPKKVAFVGSGPMPL---TSIIMAKHHLTSTHFDNFDID-EAANDVARSIVA-SDAEFEGRMKFLTRDIMEVKE------  198 (286)
Q Consensus       130 ~~~~VL~IG~G~lp~---tai~lA~~~~~g~~V~~iDid-~~ai~~Ar~~~~-~~g~l~~~i~f~~~D~~~~~~------  198 (286)
                      +++.++.-|++ .|+   ++..||+   .|++|+..|++ ++.++...+.+. ..|   .++.++.+|+.+...      
T Consensus         3 ~gK~alITGas-~GIG~aiA~~la~---~Ga~V~~~~r~~~~~~~~~~~~~~~~~g---~~~~~~~~Dv~~~~~v~~~~~   75 (260)
T d1x1ta1           3 KGKVAVVTGST-SGIGLGIATALAA---QGADIVLNGFGDAAEIEKVRAGLAAQHG---VKVLYDGADLSKGEAVRGLVD   75 (260)
T ss_dssp             TTCEEEETTCS-SHHHHHHHHHHHH---TTCEEEEECCSCHHHHHHHHHHHHHHHT---SCEEEECCCTTSHHHHHHHHH
T ss_pred             CcCEEEEeCCC-CHHHHHHHHHHHH---CCCEEEEEeCCcHHHHHHHHHHHHHhcC---CcEEEEECCCCCHHHHHHHHH
Confidence            46777777776 455   4455666   89999999996 566666555544 445   589999999987321      


Q ss_pred             ----cCCCcceeehhhhcc-------CChhHHH-----------HHHHHHHhhccC--CcEEEEee
Q 042119          199 ----QLGEYDCIFLAALVG-------MSKEEKL-----------TILGHIRKYMKD--GGILLVRS  240 (286)
Q Consensus       199 ----~l~~fD~V~~aalvg-------~~~~~k~-----------~vl~~l~~~l~p--gg~lv~r~  240 (286)
                          .++..|+++..+-+.       ++.++..           .+.+.+.+.|+.  +|.++.-+
T Consensus        76 ~~~~~~G~iDiLVnnAG~~~~~~~~~~~~~~~~~~~~vNl~g~~~~~~~~~~~m~~~~~G~Iv~is  141 (260)
T d1x1ta1          76 NAVRQMGRIDILVNNAGIQHTALIEDFPTEKWDAILALNLSAVFHGTAAALPHMKKQGFGRIINIA  141 (260)
T ss_dssp             HHHHHHSCCSEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEEC
T ss_pred             HHHHHhCCCcEEEeecccccCCchhhhhHHhhhhhhhccccccccccchhhhhHhhcCCceEeecc
Confidence                335688877555331       2223322           334556666654  56666543

>d1k0ia1 c.3.1.2 (A:1-173,A:276-394) p-Hydroxybenzoate hydroxylase, PHBH {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: p-Hydroxybenzoate hydroxylase, PHBH
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=85.36  E-value=0.14  Score=42.52  Aligned_cols=47  Identities=13%  Similarity=0.150  Sum_probs=35.4

Q ss_pred             CEEEEeccCCChhhHHHHHhhcCCCcEEEEEeCChHHH-----------HHHHHHHHhcC
Q 042119          132 KKVAFVGSGPMPLTSIIMAKHHLTSTHFDNFDIDEAAN-----------DVARSIVASDA  180 (286)
Q Consensus       132 ~~VL~IG~G~lp~tai~lA~~~~~g~~V~~iDid~~ai-----------~~Ar~~~~~~g  180 (286)
                      .+|+.||+||.|+++....++  .|.+|+.+|.+++.-           ..+.++++++|
T Consensus         3 ~~V~IvGaGp~Gl~~A~~L~~--~G~~v~vlE~~~~~~~~~~~~~~~l~~~~~~~l~~lg   60 (292)
T d1k0ia1           3 TQVAIIGAGPSGLLLGQLLHK--AGIDNVILERQTPDYVLGRIRAGVLEQGMVDLLREAG   60 (292)
T ss_dssp             CSEEEECCSHHHHHHHHHHHH--HTCCEEEECSSCHHHHHTCCCCCEECHHHHHHHHHTT
T ss_pred             CCEEEECcCHHHHHHHHHHHH--CCCCEEEEeCCCCCCCCCCceEEEECHHHHHHHHHcC
Confidence            379999999999876655553  689999999987543           24556777777

>d1li4a1 c.2.1.4 (A:190-352) S-adenosylhomocystein hydrolase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: S-adenosylhomocystein hydrolase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=85.32  E-value=0.47  Score=37.49  Aligned_cols=91  Identities=18%  Similarity=0.087  Sum_probs=58.9

Q ss_pred             CCCCCEEEEeccCCChhhHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEccccchhhcCCCcceee
Q 042119          128 VVQPKKVAFVGSGPMPLTSIIMAKHHLTSTHFDNFDIDEAANDVARSIVASDAEFEGRMKFLTRDIMEVKEQLGEYDCIF  207 (286)
Q Consensus       128 ~~~~~~VL~IG~G~lp~tai~lA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~g~l~~~i~f~~~D~~~~~~~l~~fD~V~  207 (286)
                      .-.+++|..+|-|..|-.....++  ..|++|+.+|+||-..-.|    ...|       |.+...   ...+..-|+++
T Consensus        21 ~l~Gk~v~V~GyG~iG~g~A~~~r--g~G~~V~v~e~dp~~al~A----~~dG-------~~v~~~---~~a~~~adivv   84 (163)
T d1li4a1          21 MIAGKVAVVAGYGDVGKGCAQALR--GFGARVIITEIDPINALQA----AMEG-------YEVTTM---DEACQEGNIFV   84 (163)
T ss_dssp             CCTTCEEEEECCSHHHHHHHHHHH--HTTCEEEEECSCHHHHHHH----HHTT-------CEECCH---HHHTTTCSEEE
T ss_pred             eecCCEEEEeccccccHHHHHHHH--hCCCeeEeeecccchhHHh----hcCc-------eEeeeh---hhhhhhccEEE
Confidence            368899999999998887777766  3899999999999442111    1234       222332   33445678887


Q ss_pred             hhhhccCChhHHHHHHHHHHhhccCCcEEEEee
Q 042119          208 LAALVGMSKEEKLTILGHIRKYMKDGGILLVRS  240 (286)
Q Consensus       208 ~aalvg~~~~~k~~vl~~l~~~l~pgg~lv~r~  240 (286)
                      .+.-      .|--+=.+-.+.||+|++|.--.
T Consensus        85 taTG------n~~vI~~eh~~~MKdgaIL~N~G  111 (163)
T d1li4a1          85 TTTG------CIDIILGRHFEQMKDDAIVCNIG  111 (163)
T ss_dssp             ECSS------CSCSBCHHHHTTCCTTEEEEECS
T ss_pred             ecCC------CccchhHHHHHhccCCeEEEEec
Confidence            6532      11123334567889888877643

>d1ebda1 c.3.1.5 (A:7-154,A:272-346) Dihydrolipoamide dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=85.19  E-value=0.21  Score=39.52  Aligned_cols=32  Identities=19%  Similarity=0.260  Sum_probs=27.4

Q ss_pred             EEEEeccCCChhhHHHHHhhcCCCcEEEEEeCCh
Q 042119          133 KVAFVGSGPMPLTSIIMAKHHLTSTHFDNFDIDE  166 (286)
Q Consensus       133 ~VL~IG~G~lp~tai~lA~~~~~g~~V~~iDid~  166 (286)
                      .|+.||+||.|+++...|.+  .|.+|+.||..+
T Consensus         5 DviVIG~GpaGl~aA~~aar--~G~kV~vIEk~~   36 (223)
T d1ebda1           5 ETLVVGAGPGGYVAAIRAAQ--LGQKVTIVEKGN   36 (223)
T ss_dssp             SEEEECCSHHHHHHHHHHHH--TTCCEEEEESSC
T ss_pred             CEEEECCCHHHHHHHHHHHH--CCCEEEEEecCC
Confidence            58899999999998887774  789999999763

>d1hdoa_ c.2.1.2 (A:) Biliverdin IX beta reductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Biliverdin IX beta reductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=85.18  E-value=0.42  Score=37.86  Aligned_cols=69  Identities=17%  Similarity=0.234  Sum_probs=45.5

Q ss_pred             CCEEEEecc-CCChhhHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEccccchhh---cCCCccee
Q 042119          131 PKKVAFVGS-GPMPLTSIIMAKHHLTSTHFDNFDIDEAANDVARSIVASDAEFEGRMKFLTRDIMEVKE---QLGEYDCI  206 (286)
Q Consensus       131 ~~~VL~IG~-G~lp~tai~lA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~g~l~~~i~f~~~D~~~~~~---~l~~fD~V  206 (286)
                      -+||+.+|+ |.+|...+...  ...|.+|++++++++.+.       ..  ...+++++.+|+.+...   .+.+.|.|
T Consensus         3 ~kkIlV~GatG~iG~~v~~~L--l~~g~~V~~~~R~~~~~~-------~~--~~~~~~~~~gD~~d~~~l~~al~~~d~v   71 (205)
T d1hdoa_           3 VKKIAIFGATGQTGLTTLAQA--VQAGYEVTVLVRDSSRLP-------SE--GPRPAHVVVGDVLQAADVDKTVAGQDAV   71 (205)
T ss_dssp             CCEEEEESTTSHHHHHHHHHH--HHTTCEEEEEESCGGGSC-------SS--SCCCSEEEESCTTSHHHHHHHHTTCSEE
T ss_pred             CCEEEEECCCCHHHHHHHHHH--HHCcCEEEEEEcChhhcc-------cc--cccccccccccccchhhHHHHhcCCCEE
Confidence            478999995 54444433211  226899999999987631       12  23678999999987442   34678988


Q ss_pred             ehhh
Q 042119          207 FLAA  210 (286)
Q Consensus       207 ~~aa  210 (286)
                      +.+.
T Consensus        72 i~~~   75 (205)
T d1hdoa_          72 IVLL   75 (205)
T ss_dssp             EECC
T ss_pred             EEEe
Confidence            8543

>d3lada1 c.3.1.5 (A:1-158,A:278-348) Dihydrolipoamide dehydrogenase {Azotobacter vinelandii [TaxId: 354]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Azotobacter vinelandii [TaxId: 354]

Probab=85.09  E-value=0.18  Score=39.95  Aligned_cols=31  Identities=16%  Similarity=0.213  Sum_probs=26.8

Q ss_pred             EEEEeccCCChhhHHHHHhhcCCCcEEEEEeCC
Q 042119          133 KVAFVGSGPMPLTSIIMAKHHLTSTHFDNFDID  165 (286)
Q Consensus       133 ~VL~IG~G~lp~tai~lA~~~~~g~~V~~iDid  165 (286)
                      .|+.||+||.|+++..-|.+  .|.+|+.||..
T Consensus         5 DviIIGgGpAGl~aA~~aar--~G~~V~viE~~   35 (229)
T d3lada1           5 DVIVIGAGPGGYVAAIKSAQ--LGLKTALIEKY   35 (229)
T ss_dssp             SEEEECCSHHHHHHHHHHHH--HTCCEEEEECC
T ss_pred             CEEEECcCHHHHHHHHHHHH--CCCeEEEEecc
Confidence            48999999999999888775  78999999964

>d1zh8a1 c.2.1.3 (A:4-131,A:276-328) Hypothetical protein TM0312 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Hypothetical protein TM0312
species: Thermotoga maritima [TaxId: 2336]

Probab=84.95  E-value=0.86  Score=35.57  Aligned_cols=72  Identities=13%  Similarity=0.055  Sum_probs=42.7

Q ss_pred             CCEEEEeccCCChhhH-HHHHhhcCCCcEEEE-EeCChHHHHHHHHHHHhcCCCCCCeEEEEccccchhhcCCCcceeeh
Q 042119          131 PKKVAFVGSGPMPLTS-IIMAKHHLTSTHFDN-FDIDEAANDVARSIVASDAEFEGRMKFLTRDIMEVKEQLGEYDCIFL  208 (286)
Q Consensus       131 ~~~VL~IG~G~lp~ta-i~lA~~~~~g~~V~~-iDid~~ai~~Ar~~~~~~g~l~~~i~f~~~D~~~~~~~l~~fD~V~~  208 (286)
                      +-||..||||..|-.. +...+......++++ +|.+++..   ++..+..|.     .....|..++..+ .+.|+|++
T Consensus         3 kirigiIG~G~~g~~~h~~~l~~~~~~~~i~~v~d~~~~~~---~~~~~~~~~-----~~~~~~~~ell~~-~~id~v~I   73 (181)
T d1zh8a1           3 KIRLGIVGCGIAARELHLPALKNLSHLFEITAVTSRTRSHA---EEFAKMVGN-----PAVFDSYEELLES-GLVDAVDL   73 (181)
T ss_dssp             CEEEEEECCSHHHHHTHHHHHHTTTTTEEEEEEECSSHHHH---HHHHHHHSS-----CEEESCHHHHHHS-SCCSEEEE
T ss_pred             CcEEEEEcCCHHHHHHHHHHHHhCCCCeEEEEEEeccHhhh---hhhhccccc-----cceeeeeeccccc-cccceeec
Confidence            3589999999665432 222221223357776 59998764   444455562     1234676666543 47899987


Q ss_pred             hhh
Q 042119          209 AAL  211 (286)
Q Consensus       209 aal  211 (286)
                      +.-
T Consensus        74 ~tp   76 (181)
T d1zh8a1          74 TLP   76 (181)
T ss_dssp             CCC
T ss_pred             ccc
Confidence            753

>d1ygya1 c.2.1.4 (A:99-282) Phosphoglycerate dehydrogenase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Phosphoglycerate dehydrogenase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=84.94  E-value=0.11  Score=41.66  Aligned_cols=92  Identities=16%  Similarity=0.066  Sum_probs=57.8

Q ss_pred             CCCCEEEEeccCCChhhHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEccccchhhcCCCcceeeh
Q 042119          129 VQPKKVAFVGSGPMPLTSIIMAKHHLTSTHFDNFDIDEAANDVARSIVASDAEFEGRMKFLTRDIMEVKEQLGEYDCIFL  208 (286)
Q Consensus       129 ~~~~~VL~IG~G~lp~tai~lA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~g~l~~~i~f~~~D~~~~~~~l~~fD~V~~  208 (286)
                      ..++++..||.|.+|-....+++  ..|.+|.++|.....-.     ....+     +++  .+..+   -+...|+|.+
T Consensus        42 l~~k~vgiiG~G~IG~~va~~~~--~fg~~v~~~d~~~~~~~-----~~~~~-----~~~--~~l~e---ll~~sDiv~~  104 (184)
T d1ygya1          42 IFGKTVGVVGLGRIGQLVAQRIA--AFGAYVVAYDPYVSPAR-----AAQLG-----IEL--LSLDD---LLARADFISV  104 (184)
T ss_dssp             CTTCEEEEECCSHHHHHHHHHHH--TTTCEEEEECTTSCHHH-----HHHHT-----CEE--CCHHH---HHHHCSEEEE
T ss_pred             ccceeeeeccccchhHHHHHHhh--hccceEEeecCCCChhH-----HhhcC-----cee--ccHHH---HHhhCCEEEE
Confidence            45789999999999887777777  47999999998754321     11223     222  23323   2346798886


Q ss_pred             hhhccCChhHHHHHHHHHHhhccCCcEEEEe
Q 042119          209 AALVGMSKEEKLTILGHIRKYMKDGGILLVR  239 (286)
Q Consensus       209 aalvg~~~~~k~~vl~~l~~~l~pgg~lv~r  239 (286)
                      +.-.  +.+.+.=+=++..+.||||++||=-
T Consensus       105 ~~Pl--t~~T~~lin~~~l~~mk~~a~lIN~  133 (184)
T d1ygya1         105 HLPK--TPETAGLIDKEALAKTKPGVIIVNA  133 (184)
T ss_dssp             CCCC--STTTTTCBCHHHHTTSCTTEEEEEC
T ss_pred             cCCC--CchhhhhhhHHHHhhhCCCceEEEe
Confidence            5422  2222222223567889999887653

>d1pvva2 c.78.1.1 (A:151-313) Ornithine transcarbamoylase {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: ATC-like
superfamily: Aspartate/ornithine carbamoyltransferase
family: Aspartate/ornithine carbamoyltransferase
domain: Ornithine transcarbamoylase
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=84.92  E-value=3.6  Score=31.47  Aligned_cols=73  Identities=21%  Similarity=0.279  Sum_probs=49.9

Q ss_pred             CCCEEEEeccCCChh--hHHHHHhhcCCCcEEEEE-----eCChHHHHHHHHHHHhcCCCCCCeEEEEccccchhhcCCC
Q 042119          130 QPKKVAFVGSGPMPL--TSIIMAKHHLTSTHFDNF-----DIDEAANDVARSIVASDAEFEGRMKFLTRDIMEVKEQLGE  202 (286)
Q Consensus       130 ~~~~VL~IG~G~lp~--tai~lA~~~~~g~~V~~i-----Did~~ai~~Ar~~~~~~g~l~~~i~f~~~D~~~~~~~l~~  202 (286)
                      .|.+|++||.|. -.  |.+.++.  ..|.+|+.+     ..+++.++++++.....+   ..+++. -|.   ...+.+
T Consensus         3 ~gl~Ia~VGD~~-nv~~Sli~~l~--~~g~~v~~~~P~~~~~~~~~~~~~~~~~~~~~---~~~~~~-~d~---~ea~~~   72 (163)
T d1pvva2           3 KGVKVVYVGDGN-NVAHSLMIAGT--KLGADVVVATPEGYEPDEKVIKWAEQNAAESG---GSFELL-HDP---VKAVKD   72 (163)
T ss_dssp             TTCEEEEESCCC-HHHHHHHHHHH--HTTCEEEEECCTTCCCCHHHHHHHHHHHHHHT---CEEEEE-SCH---HHHTTT
T ss_pred             CCCEEEEECCCc-HHHHHHHHHHH--HcCCeEEEecccccCCChHHHHHHHHhhhccc---ceEEEe-cCH---HHHhhh
Confidence            478999999975 32  3333333  258999987     778899999999887766   244443 333   344567


Q ss_pred             cceeehhhhc
Q 042119          203 YDCIFLAALV  212 (286)
Q Consensus       203 fD~V~~aalv  212 (286)
                      .|+|+.....
T Consensus        73 adviy~~~~~   82 (163)
T d1pvva2          73 ADVIYTDVWA   82 (163)
T ss_dssp             CSEEEECCCC
T ss_pred             ccEEeeccee
Confidence            8999977654

>d2i76a2 c.2.1.6 (A:2-154) Hypothetical protein TM1727 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Hypothetical protein TM1727
species: Thermotoga maritima [TaxId: 2336]

Probab=84.84  E-value=0.23  Score=37.71  Aligned_cols=83  Identities=11%  Similarity=0.168  Sum_probs=43.4

Q ss_pred             EEEeccCCChhhHHHHHhhcCCCcEE-EEEeCChHHHHHHHHHHHhcCCCCCCeEEEEccccchhhcCCCcceeehhhhc
Q 042119          134 VAFVGSGPMPLTSIIMAKHHLTSTHF-DNFDIDEAANDVARSIVASDAEFEGRMKFLTRDIMEVKEQLGEYDCIFLAALV  212 (286)
Q Consensus       134 VL~IG~G~lp~tai~lA~~~~~g~~V-~~iDid~~ai~~Ar~~~~~~g~l~~~i~f~~~D~~~~~~~l~~fD~V~~aalv  212 (286)
                      |=|||+|.+|..   |++....+.++ ..++++++..+...   +..+   ..    ..+.   ....+..|+||++.- 
T Consensus         2 IgfIG~G~mg~~---l~~~L~~~~~~~~v~~R~~~~~~~l~---~~~~---~~----~~~~---~~~~~~~DiVil~v~-   64 (153)
T d2i76a2           2 LNFVGTGTLTRF---FLECLKDRYEIGYILSRSIDRARNLA---EVYG---GK----AATL---EKHPELNGVVFVIVP-   64 (153)
T ss_dssp             CEEESCCHHHHH---HHHTTC----CCCEECSSHHHHHHHH---HHTC---CC----CCSS---CCCCC---CEEECSC-
T ss_pred             EEEEeCcHHHHH---HHHHHHhCCCEEEEEeCChhhhcchh---hccc---cc----ccch---hhhhccCcEEEEecc-
Confidence            458999987754   45543345554 46788877665443   3344   11    1222   223356899997731 


Q ss_pred             cCChhHHHHHHHHHHhhccCCcEEEEee
Q 042119          213 GMSKEEKLTILGHIRKYMKDGGILLVRS  240 (286)
Q Consensus       213 g~~~~~k~~vl~~l~~~l~pgg~lv~r~  240 (286)
                           +  ..+.++...++..+.+++..
T Consensus        65 -----d--~~i~~v~~~l~~~~~ivi~~   85 (153)
T d2i76a2          65 -----D--RYIKTVANHLNLGDAVLVHC   85 (153)
T ss_dssp             -----T--TTHHHHHTTTCCSSCCEEEC
T ss_pred             -----c--hhhhHHHhhhcccceeeeec
Confidence                 2  24556777777666666654

>d2b0ja2 c.2.1.6 (A:1-242) 5,10-methenyltetrahydromethanopterin hydrogenase, HMD {Archaeon Methanocaldococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: 5,10-methenyltetrahydromethanopterin hydrogenase, HMD
species: Archaeon Methanocaldococcus jannaschii [TaxId: 2190]

Probab=84.56  E-value=0.89  Score=38.04  Aligned_cols=38  Identities=13%  Similarity=0.197  Sum_probs=29.1

Q ss_pred             CCCcceeehhhhccCChhHHHHHHHHHHhhccCCcEEEEee
Q 042119          200 LGEYDCIFLAALVGMSKEEKLTILGHIRKYMKDGGILLVRS  240 (286)
Q Consensus       200 l~~fD~V~~aalvg~~~~~k~~vl~~l~~~l~pgg~lv~r~  240 (286)
                      ..+.|+||++--.+   +.+.++++.+...++||.+++-.+
T Consensus       139 v~~ADiII~~vP~~---~~v~~Vi~~I~~~l~~g~Iiid~S  176 (242)
T d2b0ja2         139 VEGADIVITWLPKG---NKQPDIIKKFADAIPEGAIVTHAC  176 (242)
T ss_dssp             HTTCSEEEECCTTC---TTHHHHHHHHGGGSCTTCEEEECS
T ss_pred             HhcCCeEEEeeecH---HHHHHHHHHHHhhCCCCcEEEecC
Confidence            35789999774332   567789999999999999886544

>d1hdca_ c.2.1.2 (A:) 3-alpha,20-beta-hydroxysteroid dehydrogenase {Streptomyces hydrogenans [TaxId: 1905]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 3-alpha,20-beta-hydroxysteroid dehydrogenase
species: Streptomyces hydrogenans [TaxId: 1905]

Probab=84.49  E-value=1.1  Score=37.18  Aligned_cols=72  Identities=13%  Similarity=0.116  Sum_probs=50.8

Q ss_pred             CCCEEEEeccCCChhh---HHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEccccchhh--------
Q 042119          130 QPKKVAFVGSGPMPLT---SIIMAKHHLTSTHFDNFDIDEAANDVARSIVASDAEFEGRMKFLTRDIMEVKE--------  198 (286)
Q Consensus       130 ~~~~VL~IG~G~lp~t---ai~lA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~g~l~~~i~f~~~D~~~~~~--------  198 (286)
                      +++.++.-|++ -|+.   +..|++   .|++|+..|++++.++   +.++.+|   .++.++.+|+.+...        
T Consensus         4 ~gK~alVTGas-~GIG~aia~~la~---~Ga~V~~~~r~~~~~~---~~~~~~~---~~~~~~~~Dv~~~~~v~~~~~~~   73 (254)
T d1hdca_           4 SGKTVIITGGA-RGLGAEAARQAVA---AGARVVLADVLDEEGA---ATARELG---DAARYQHLDVTIEEDWQRVVAYA   73 (254)
T ss_dssp             CCSEEEEETTT-SHHHHHHHHHHHH---TTCEEEEEESCHHHHH---HHHHTTG---GGEEEEECCTTCHHHHHHHHHHH
T ss_pred             CCCEEEEeCcC-CHHHHHHHHHHHH---CCCEEEEEECCHHHHH---HHHHHhC---CceEEEEcccCCHHHHHHHHHHH
Confidence            57889999987 4654   455555   7999999999997665   3444555   679999999986321        


Q ss_pred             --cCCCcceeehhhh
Q 042119          199 --QLGEYDCIFLAAL  211 (286)
Q Consensus       199 --~l~~fD~V~~aal  211 (286)
                        .++..|+++..+-
T Consensus        74 ~~~~g~iDilVnnAg   88 (254)
T d1hdca_          74 REEFGSVDGLVNNAG   88 (254)
T ss_dssp             HHHHSCCCEEEECCC
T ss_pred             HHHcCCccEEEecCc
Confidence              2356887765553

>d1dxla1 c.3.1.5 (A:4-152,A:276-347) Dihydrolipoamide dehydrogenase {Garden pea (Pisum sativum) [TaxId: 3888]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Garden pea (Pisum sativum) [TaxId: 3888]

Probab=84.48  E-value=0.19  Score=39.90  Aligned_cols=32  Identities=19%  Similarity=0.255  Sum_probs=27.4

Q ss_pred             EEEEeccCCChhhHHHHHhhcCCCcEEEEEeCCh
Q 042119          133 KVAFVGSGPMPLTSIIMAKHHLTSTHFDNFDIDE  166 (286)
Q Consensus       133 ~VL~IG~G~lp~tai~lA~~~~~g~~V~~iDid~  166 (286)
                      -|+.||+||.|+++...+.+  .|.+|+.||..+
T Consensus         5 DvvVIGgGpaGl~aA~~aa~--~G~kV~vie~~~   36 (221)
T d1dxla1           5 DVVIIGGGPGGYVAAIKAAQ--LGFKTTCIEKRG   36 (221)
T ss_dssp             CEEEECCSHHHHHHHHHHHH--HTCCEEEEECSS
T ss_pred             CEEEECCCHHHHHHHHHHHH--CCCcEEEEEecC
Confidence            58999999999998877764  789999999764

>d1u0sy_ c.23.1.1 (Y:) CheY protein {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: CheY-like
family: CheY-related
domain: CheY protein
species: Thermotoga maritima [TaxId: 2336]

Probab=84.28  E-value=1.4  Score=31.92  Aligned_cols=80  Identities=14%  Similarity=0.071  Sum_probs=56.8

Q ss_pred             CcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEccccchhhcC--CCcceeehhhhccCChhHHHHHHHHHHhhccCC
Q 042119          156 STHFDNFDIDEAANDVARSIVASDAEFEGRMKFLTRDIMEVKEQL--GEYDCIFLAALVGMSKEEKLTILGHIRKYMKDG  233 (286)
Q Consensus       156 g~~V~~iDid~~ai~~Ar~~~~~~g~l~~~i~f~~~D~~~~~~~l--~~fD~V~~aalvg~~~~~k~~vl~~l~~~l~pg  233 (286)
                      |-+|.-+|=++...+..++.+++.|.   ++.....|..+....+  ..||+|+++..  |+..+-.++++++.+. .|.
T Consensus         1 GkrILivDD~~~~~~~l~~~L~~~g~---~v~~~a~~~~~al~~~~~~~~dliilD~~--mp~~~G~e~~~~ir~~-~~~   74 (118)
T d1u0sy_           1 GKRVLIVDDAAFMRMMLKDIITKAGY---EVAGEATNGREAVEKYKELKPDIVTMDIT--MPEMNGIDAIKEIMKI-DPN   74 (118)
T ss_dssp             CCEEEEECSCHHHHHHHHHHHHHTTC---EEEEEESSHHHHHHHHHHHCCSEEEEECS--CGGGCHHHHHHHHHHH-CTT
T ss_pred             CCEEEEEeCCHHHHHHHHHHHHHcCC---ceEEEECCHHHHHHHHHhccCCEEEEecC--CCCCCHHHHHHHHHHh-CCC
Confidence            56789999999999999999999882   3433446665544433  36999998853  4445667888888654 566


Q ss_pred             cEEEEeec
Q 042119          234 GILLVRSA  241 (286)
Q Consensus       234 g~lv~r~~  241 (286)
                      -.+++-++
T Consensus        75 ~pvi~ls~   82 (118)
T d1u0sy_          75 AKIIVCSA   82 (118)
T ss_dssp             CCEEEEEC
T ss_pred             CcEEEEEc
Confidence            66666554

>d1qsga_ c.2.1.2 (A:) Enoyl-ACP reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Enoyl-ACP reductase
species: Escherichia coli [TaxId: 562]

Probab=84.16  E-value=3.2  Score=33.46  Aligned_cols=59  Identities=12%  Similarity=0.151  Sum_probs=42.5

Q ss_pred             CCCEEEEeccCC-Chh---hHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEccccc
Q 042119          130 QPKKVAFVGSGP-MPL---TSIIMAKHHLTSTHFDNFDIDEAANDVARSIVASDAEFEGRMKFLTRDIME  195 (286)
Q Consensus       130 ~~~~VL~IG~G~-lp~---tai~lA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~g~l~~~i~f~~~D~~~  195 (286)
                      .+++||.-|++. .|+   .+..|++   .|++|+..|++++..+.+.+.....|    +..+...|..+
T Consensus         4 ~gK~~lITGass~~GIG~aiA~~l~~---~G~~V~i~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~   66 (258)
T d1qsga_           4 SGKRILVTGVASKLSIAYGIAQAMHR---EGAELAFTYQNDKLKGRVEEFAAQLG----SDIVLQCDVAE   66 (258)
T ss_dssp             TTCEEEECCCCSTTSHHHHHHHHHHH---TTCEEEEEESSTTTHHHHHHHHHHTT----CCCEEECCTTC
T ss_pred             CCCEEEEECCCCchhHHHHHHHHHHH---cCCEEEEEeCCHHHHHHHHHHHhhcC----Ccceeecccch
Confidence            578899988642 343   4566776   89999999999998888888877665    34455556544

>d1yova1 c.111.1.2 (A:6-534) Amyloid beta precursor protein-binding protein 1, APPBP1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Activating enzymes of the ubiquitin-like proteins
superfamily: Activating enzymes of the ubiquitin-like proteins
family: Ubiquitin activating enzymes (UBA)
domain: Amyloid beta precursor protein-binding protein 1, APPBP1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=84.08  E-value=1.7  Score=40.15  Aligned_cols=106  Identities=10%  Similarity=0.139  Sum_probs=58.5

Q ss_pred             CCEEEEeccCCChhhHHH-HHhhcCCC-cEEEEEeCCh-------------------HHHHHHHHHHHhcCCCCCCeEEE
Q 042119          131 PKKVAFVGSGPMPLTSII-MAKHHLTS-THFDNFDIDE-------------------AANDVARSIVASDAEFEGRMKFL  189 (286)
Q Consensus       131 ~~~VL~IG~G~lp~tai~-lA~~~~~g-~~V~~iDid~-------------------~ai~~Ar~~~~~~g~l~~~i~f~  189 (286)
                      .++|+.||+|++|.-.+. |+   ++| .++|-+|-|.                   ...+.+.+.+.++. -.-+++++
T Consensus        25 ~s~VlvvG~gglG~Ei~knLv---l~GVg~itivD~d~v~~sdL~rqf~~~~~diGk~ka~~~~~~L~~lN-p~v~i~~~  100 (529)
T d1yova1          25 SAHVCLINATATGTEILKNLV---LPGIGSFTIIDGNQVSGEDAGNNFFLQRSSIGKNRAEAAMEFLQELN-SDVSGSFV  100 (529)
T ss_dssp             HCEEEECCCSHHHHHHHHHHH---TTTCSEEEEECCSBCCHHHHHHCTTCCGGGTTSBHHHHHHHHHHTTC-TTSBCCEE
T ss_pred             CCCEEEECCCHHHHHHHHHHH---HhcCCEEEEEcCCcCChhhcCchhcCChhhCCCHHHHHHHHHHHHhC-CCCcEEEE
Confidence            479999999965543321 33   366 5788887643                   23444555566655 23356677


Q ss_pred             Eccccchhh----cCCCcceeehhhhccCChhHHHHHHHHHHhhccCCcEEEEeecCccee
Q 042119          190 TRDIMEVKE----QLGEYDCIFLAALVGMSKEEKLTILGHIRKYMKDGGILLVRSAKGARA  246 (286)
Q Consensus       190 ~~D~~~~~~----~l~~fD~V~~aalvg~~~~~k~~vl~~l~~~l~pgg~lv~r~~~g~r~  246 (286)
                      ..+..++..    .+.+||+|+.+..   +.+....+-+.+++.-.   .++.-...|+..
T Consensus       101 ~~~~~~~~~~~~~~~~~~dvVv~~~~---~~~~~~~l~~~c~~~~i---p~i~~~~~G~~G  155 (529)
T d1yova1         101 EESPENLLDNDPSFFCRFTVVVATQL---PESTSLRLADVLWNSQI---PLLICRTYGLVG  155 (529)
T ss_dssp             SSCHHHHHHSCGGGGGGCSEEEEESC---CHHHHHHHHHHHHHHTC---CEEEEEEETTEE
T ss_pred             cCCchhhhhhHHHHhcCCCEEEECCC---CHHHHHHHHHHHHHcCC---CEEEEeccCCEE
Confidence            777655432    2457999996533   23444444333333322   244433455544

>d1yovb1 c.111.1.2 (B:12-437) UBA3 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Activating enzymes of the ubiquitin-like proteins
superfamily: Activating enzymes of the ubiquitin-like proteins
family: Ubiquitin activating enzymes (UBA)
domain: UBA3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=83.97  E-value=0.98  Score=40.74  Aligned_cols=75  Identities=15%  Similarity=0.220  Sum_probs=49.0

Q ss_pred             CCEEEEeccCCChhhHHH-HHhhcCCCc-EEEEEeCCh-------------------HHHHHHHHHHHhcCCCCCCeEEE
Q 042119          131 PKKVAFVGSGPMPLTSII-MAKHHLTST-HFDNFDIDE-------------------AANDVARSIVASDAEFEGRMKFL  189 (286)
Q Consensus       131 ~~~VL~IG~G~lp~tai~-lA~~~~~g~-~V~~iDid~-------------------~ai~~Ar~~~~~~g~l~~~i~f~  189 (286)
                      .+|||.||+|.+|-..+. |+.   .|. +++-+|.|.                   .-.+.|.+.+++.. -.-+|..+
T Consensus        37 ~~kVlvvG~GglG~ei~k~L~~---~Gvg~i~lvD~D~Ve~sNL~RQflf~~~diG~~Ka~~a~~~l~~~n-p~v~i~~~  112 (426)
T d1yovb1          37 TCKVLVIGAGGLGCELLKNLAL---SGFRQIHVIDMDTIDVSNLNRQFLFRPKDIGRPKAEVAAEFLNDRV-PNCNVVPH  112 (426)
T ss_dssp             HCCEEEECSSTTHHHHHHHHHT---TTCCCEEEECCCBCCGGGGGTCTTCCGGGTTSBHHHHHHHHHHHHS-TTCCCEEE
T ss_pred             cCeEEEECCCHHHHHHHHHHHH---cCCCeEEEEECCCcchhhhcccccCChhHcCcHHHHHHHHHHHhhC-CCCceEee
Confidence            479999999988765443 333   454 788888752                   13455666666665 34567777


Q ss_pred             Eccccchhhc-CCCcceeehh
Q 042119          190 TRDIMEVKEQ-LGEYDCIFLA  209 (286)
Q Consensus       190 ~~D~~~~~~~-l~~fD~V~~a  209 (286)
                      ..++.+...+ +.+||+|+.+
T Consensus       113 ~~~i~~~~~~~~~~~DlVi~~  133 (426)
T d1yovb1         113 FNKIQDFNDTFYRQFHIIVCG  133 (426)
T ss_dssp             CSCGGGBCHHHHTTCSEEEEC
T ss_pred             eccccchHHHHHHhcchheec
Confidence            7777553332 3689999865

>d1geea_ c.2.1.2 (A:) Glucose dehydrogenase {Bacillus megaterium [TaxId: 1404]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Glucose dehydrogenase
species: Bacillus megaterium [TaxId: 1404]

Probab=83.77  E-value=1.6  Score=36.19  Aligned_cols=75  Identities=16%  Similarity=0.145  Sum_probs=52.6

Q ss_pred             CCCEEEEeccCCChhh---HHHHHhhcCCCcEEEEEeCCh-HHHHHHHHHHHhcCCCCCCeEEEEccccchhh-------
Q 042119          130 QPKKVAFVGSGPMPLT---SIIMAKHHLTSTHFDNFDIDE-AANDVARSIVASDAEFEGRMKFLTRDIMEVKE-------  198 (286)
Q Consensus       130 ~~~~VL~IG~G~lp~t---ai~lA~~~~~g~~V~~iDid~-~ai~~Ar~~~~~~g~l~~~i~f~~~D~~~~~~-------  198 (286)
                      +++.++.-|++ .|+.   +..||+   .|++|+..|++. +..+...+.+++.|   .++.++.+|+.+...       
T Consensus         6 ~gK~alITGas-~GIG~aia~~la~---~G~~Vv~~~r~~~~~~~~~~~~~~~~g---~~~~~~~~Dvt~~~~v~~~~~~   78 (261)
T d1geea_           6 EGKVVVITGSS-TGLGKSMAIRFAT---EKAKVVVNYRSKEDEANSVLEEIKKVG---GEAIAVKGDVTVESDVINLVQS   78 (261)
T ss_dssp             TTCEEEETTCS-SHHHHHHHHHHHH---TTCEEEEEESSCHHHHHHHHHHHHHTT---CEEEEEECCTTSHHHHHHHHHH
T ss_pred             CCCEEEEeCCC-cHHHHHHHHHHHH---CCCEEEEEeCCcHHHHHHHHHHHHhcC---CcEEEEEccCCCHHHHHHHHHH
Confidence            46788888875 4543   355555   799999999985 46666667777777   478899999986321       


Q ss_pred             ---cCCCcceeehhhh
Q 042119          199 ---QLGEYDCIFLAAL  211 (286)
Q Consensus       199 ---~l~~fD~V~~aal  211 (286)
                         .++..|+++..+-
T Consensus        79 ~~~~~G~iDiLVnnAG   94 (261)
T d1geea_          79 AIKEFGKLDVMINNAG   94 (261)
T ss_dssp             HHHHHSCCCEEEECCC
T ss_pred             HHHHhCCCCEeeccce
Confidence               3356888775553

>d1ojta1 c.3.1.5 (A:117-275,A:401-470) Dihydrolipoamide dehydrogenase {Neisseria meningitidis [TaxId: 487]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Neisseria meningitidis [TaxId: 487]

Probab=83.76  E-value=0.27  Score=39.64  Aligned_cols=32  Identities=16%  Similarity=0.230  Sum_probs=27.2

Q ss_pred             EEEEeccCCChhhHHHHHhhcCCCcEEEEEeCCh
Q 042119          133 KVAFVGSGPMPLTSIIMAKHHLTSTHFDNFDIDE  166 (286)
Q Consensus       133 ~VL~IG~G~lp~tai~lA~~~~~g~~V~~iDid~  166 (286)
                      -|+.||+||.|+++...+.+  .|.+|+-||..+
T Consensus         8 DviIIG~GPaGlsaA~~aa~--~G~~V~viE~~~   39 (229)
T d1ojta1           8 DVVVLGGGPGGYSAAFAAAD--EGLKVAIVERYK   39 (229)
T ss_dssp             EEEEECCSHHHHHHHHHHHH--TTCCEEEEESSS
T ss_pred             CEEEECcCHHHHHHHHHHHH--CCCeEEEEeccC
Confidence            58999999999998766664  789999999765

>d1oaaa_ c.2.1.2 (A:) Sepiapterin reductase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Sepiapterin reductase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=83.73  E-value=2  Score=35.08  Aligned_cols=63  Identities=8%  Similarity=-0.000  Sum_probs=44.7

Q ss_pred             CEEEEe-ccCCChhh---HHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEccccch
Q 042119          132 KKVAFV-GSGPMPLT---SIIMAKHHLTSTHFDNFDIDEAANDVARSIVASDAEFEGRMKFLTRDIMEV  196 (286)
Q Consensus       132 ~~VL~I-G~G~lp~t---ai~lA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~g~l~~~i~f~~~D~~~~  196 (286)
                      .||+.| |++ -|+.   +..||+....|++|+.+|++++.++...+.+...+ .+.++.++.+|+.+.
T Consensus         6 gKvalITGas-~GIG~aiA~~lA~~~~~G~~Vv~~~r~~~~l~~~~~~l~~~~-~~~~~~~~~~Dvs~~   72 (259)
T d1oaaa_           6 CAVCVLTGAS-RGFGRALAPQLARLLSPGSVMLVSARSESMLRQLKEELGAQQ-PDLKVVLAAADLGTE   72 (259)
T ss_dssp             SEEEEESSCS-SHHHHHHHHHHHTTBCTTCEEEEEESCHHHHHHHHHHHHHHC-TTSEEEEEECCTTSH
T ss_pred             CCEEEEeCCC-CHHHHHHHHHHHhcccCCCEEEEEECCHHHHHHHHHHHHhhc-CCceEEEEEccCCCH
Confidence            355555 654 4553   33455422369999999999999988877776665 356899999998763

>d1a9xa4 c.30.1.1 (A:556-676) Carbamoyl phosphate synthetase (CPS), large subunit PreATP-grasp domains {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PreATP-grasp domain
superfamily: PreATP-grasp domain
family: BC N-terminal domain-like
domain: Carbamoyl phosphate synthetase (CPS), large subunit PreATP-grasp domains
species: Escherichia coli [TaxId: 562]

Probab=83.71  E-value=1.2  Score=33.37  Aligned_cols=85  Identities=14%  Similarity=0.237  Sum_probs=54.1

Q ss_pred             CCCEEEEeccCCChhhHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEccccchhhcCCCcceeehh
Q 042119          130 QPKKVAFVGSGPMPLTSIIMAKHHLTSTHFDNFDIDEAANDVARSIVASDAEFEGRMKFLTRDIMEVKEQLGEYDCIFLA  209 (286)
Q Consensus       130 ~~~~VL~IG~G~lp~tai~lA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~g~l~~~i~f~~~D~~~~~~~l~~fD~V~~a  209 (286)
                      ..++||.|||||.-.         ..+.     +.|=..+..++. +++.|.   +.-.+..+...+..+..-.|-+|+.
T Consensus         3 ~~kkvlViGsGp~rI---------Gq~~-----EfDy~~~~a~~a-Lk~~g~---~~IliN~NPeTVstd~d~aD~lYfe   64 (121)
T d1a9xa4           3 DREKIMVLGGGPNRI---------GQGI-----EFDYCCVHASLA-LREDGY---ETIMVNCNPETVSTDYDTSDRLYFE   64 (121)
T ss_dssp             SSCEEEEECCCSCBT---------TBCH-----HHHHHHHHHHHH-HHHTTC---EEEEECCCTTSSTTSTTSSSEEECC
T ss_pred             CCCEEEEECCCcCcc---------cccc-----hhhHHHHHHHHH-HHhcCC---eEEEEecChhhhhcChhhcCceEEc
Confidence            467999999998521         1222     334344444444 566783   5567777777777666667888877


Q ss_pred             hhccCChhHHHHHHHHHHhhccCCcEEEEe
Q 042119          210 ALVGMSKEEKLTILGHIRKYMKDGGILLVR  239 (286)
Q Consensus       210 alvg~~~~~k~~vl~~l~~~l~pgg~lv~r  239 (286)
                      -+-       .+.+..+.+.=+|.|+++--
T Consensus        65 plt-------~e~v~~Ii~~E~p~~ii~~~   87 (121)
T d1a9xa4          65 PVT-------LEDVLEIVRIEKPKGVIVQY   87 (121)
T ss_dssp             CCS-------HHHHHHHHHHHCCSEEECSS
T ss_pred             cCC-------HHHHHHHHHHhCCCEEEeeh
Confidence            431       23455666677999987654

>d1a9xa3 c.30.1.1 (A:1-127) Carbamoyl phosphate synthetase (CPS), large subunit PreATP-grasp domains {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PreATP-grasp domain
superfamily: PreATP-grasp domain
family: BC N-terminal domain-like
domain: Carbamoyl phosphate synthetase (CPS), large subunit PreATP-grasp domains
species: Escherichia coli [TaxId: 562]

Probab=83.69  E-value=0.91  Score=34.30  Aligned_cols=86  Identities=10%  Similarity=0.228  Sum_probs=54.7

Q ss_pred             CCCCEEEEeccCCChhhHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEccccchhhcCCCcceeeh
Q 042119          129 VQPKKVAFVGSGPMPLTSIIMAKHHLTSTHFDNFDIDEAANDVARSIVASDAEFEGRMKFLTRDIMEVKEQLGEYDCIFL  208 (286)
Q Consensus       129 ~~~~~VL~IG~G~lp~tai~lA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~g~l~~~i~f~~~D~~~~~~~l~~fD~V~~  208 (286)
                      ...++||.|||||.-.         ..++     +.|-..+..+ +.+++.|.   ++-.+..+...+..+.+--|-+|+
T Consensus         5 ~~~kkvlilGsGp~~I---------Gq~~-----EfDy~~~~a~-~alke~g~---~~iliN~NP~TVstd~d~aD~lYf   66 (127)
T d1a9xa3           5 TDIKSILILGAGPIVI---------GQAC-----EFDYSGAQAC-KALREEGY---RVINVNSNPATIMTDPEMADATYI   66 (127)
T ss_dssp             SSCCEEEEECCCSCBT---------TBCT-----HHHHHHHHHH-HHHHHHTC---EEEEECSCTTCGGGCGGGSSEEEC
T ss_pred             CCCCEEEEECCCcCcc---------cccc-----hhHHHHHHHH-HHHHHcCC---eEEEecCchHhhhcChhhcceeee
Confidence            3568999999998521         2233     3343344444 44566783   466777777777666656788887


Q ss_pred             hhhccCChhHHHHHHHHHHhhccCCcEEEEe
Q 042119          209 AALVGMSKEEKLTILGHIRKYMKDGGILLVR  239 (286)
Q Consensus       209 aalvg~~~~~k~~vl~~l~~~l~pgg~lv~r  239 (286)
                      .-+   +    .+.+.++.+.=+|.|++..-
T Consensus        67 ePl---t----~e~v~~Ii~~E~pd~il~~~   90 (127)
T d1a9xa3          67 EPI---H----WEVVRKIIEKERPDAVLPTM   90 (127)
T ss_dssp             SCC---C----HHHHHHHHHHHCCSEEECSS
T ss_pred             ecC---C----HHHHHHHHHHhCcCCeEEEe
Confidence            743   1    24555666777999988654

>d1xdia1 c.3.1.5 (A:2-161,A:276-348) Dihydrolipoamide dehydrogenase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=83.65  E-value=0.35  Score=39.29  Aligned_cols=35  Identities=23%  Similarity=0.470  Sum_probs=27.0

Q ss_pred             CEEEEeccCCChhhHHHHHhh-cCCCcEEEEEeCCh
Q 042119          132 KKVAFVGSGPMPLTSIIMAKH-HLTSTHFDNFDIDE  166 (286)
Q Consensus       132 ~~VL~IG~G~lp~tai~lA~~-~~~g~~V~~iDid~  166 (286)
                      .||+.||+||.|+++...|.+ ...+.+|+.||.+.
T Consensus         2 ~~viVIG~GpaG~~aA~~aa~~~~~~~~V~liEk~~   37 (233)
T d1xdia1           2 TRIVILGGGPAGYEAALVAATSHPETTQVTVIDCDG   37 (233)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHHCTTTEEEEEEESSC
T ss_pred             cEEEEECCCHHHHHHHHHHHHcCCCCCEEEEEecCC
Confidence            489999999999987765533 34667899999753

>d1dxya1 c.2.1.4 (A:101-299) D-2-hydroxyisocaproate dehydrogenase {Lactobacillus casei [TaxId: 1582]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: D-2-hydroxyisocaproate dehydrogenase
species: Lactobacillus casei [TaxId: 1582]

Probab=83.53  E-value=0.24  Score=40.16  Aligned_cols=89  Identities=16%  Similarity=0.165  Sum_probs=55.5

Q ss_pred             CCCEEEEeccCCChhhHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEccccchhhcCCCcceeehh
Q 042119          130 QPKKVAFVGSGPMPLTSIIMAKHHLTSTHFDNFDIDEAANDVARSIVASDAEFEGRMKFLTRDIMEVKEQLGEYDCIFLA  209 (286)
Q Consensus       130 ~~~~VL~IG~G~lp~tai~lA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~g~l~~~i~f~~~D~~~~~~~l~~fD~V~~a  209 (286)
                      .+++|..||.|.+|-....+++  ..|.+|.++|..+..           + ....+.+  .+..++   +...|+|.++
T Consensus        44 ~~ktvgIiG~G~IG~~va~~l~--~fg~~v~~~d~~~~~-----------~-~~~~~~~--~~l~~l---~~~~D~v~~~  104 (199)
T d1dxya1          44 GQQTVGVMGTGHIGQVAIKLFK--GFGAKVIAYDPYPMK-----------G-DHPDFDY--VSLEDL---FKQSDVIDLH  104 (199)
T ss_dssp             GGSEEEEECCSHHHHHHHHHHH--HTTCEEEEECSSCCS-----------S-CCTTCEE--CCHHHH---HHHCSEEEEC
T ss_pred             cceeeeeeeccccccccccccc--ccceeeeccCCccch-----------h-hhcchhH--HHHHHH---HHhcccceee
Confidence            4689999999999877777776  379999999986431           1 1123333  333332   2457988765


Q ss_pred             hhccCChhHHHHHHHHHHhhccCCcEEEEe
Q 042119          210 ALVGMSKEEKLTILGHIRKYMKDGGILLVR  239 (286)
Q Consensus       210 alvg~~~~~k~~vl~~l~~~l~pgg~lv~r  239 (286)
                      .-.  +.+.+.-+=.+..+.||+|++||=-
T Consensus       105 ~pl--t~~T~~li~~~~l~~mk~~a~lIN~  132 (199)
T d1dxya1         105 VPG--IEQNTHIINEAAFNLMKPGAIVINT  132 (199)
T ss_dssp             CCC--CGGGTTSBCHHHHHHSCTTEEEEEC
T ss_pred             ecc--cccccccccHHHhhccCCceEEEec
Confidence            422  2233322333566788998877653

>d1pr9a_ c.2.1.2 (A:) Carbonyl reductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Carbonyl reductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=83.43  E-value=2.7  Score=34.24  Aligned_cols=71  Identities=15%  Similarity=0.157  Sum_probs=49.7

Q ss_pred             CCCEEEEeccCCChhh---HHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEccccchh------hcC
Q 042119          130 QPKKVAFVGSGPMPLT---SIIMAKHHLTSTHFDNFDIDEAANDVARSIVASDAEFEGRMKFLTRDIMEVK------EQL  200 (286)
Q Consensus       130 ~~~~VL~IG~G~lp~t---ai~lA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~g~l~~~i~f~~~D~~~~~------~~l  200 (286)
                      .++++|..|++ .|+.   +..|++   .|++|+.+|++++.++..   .+..+    .+.+++.|+.+..      ..+
T Consensus         6 ~GK~~lITGas-~GIG~aia~~la~---~G~~V~~~~r~~~~l~~~---~~~~~----~~~~~~~Dv~d~~~v~~~~~~~   74 (244)
T d1pr9a_           6 AGRRVLVTGAG-KGIGRGTVQALHA---TGARVVAVSRTQADLDSL---VRECP----GIEPVCVDLGDWEATERALGSV   74 (244)
T ss_dssp             TTCEEEEESTT-SHHHHHHHHHHHH---TTCEEEEEESCHHHHHHH---HHHST----TCEEEECCTTCHHHHHHHHTTC
T ss_pred             CCCEEEEeCCC-CHHHHHHHHHHHH---cCCEEEEEECCHHHHHHH---HHhcC----CCeEEEEeCCCHHHHHHHHHHh
Confidence            67899999987 4654   344554   799999999998876544   33343    4788889987632      245


Q ss_pred             CCcceeehhhh
Q 042119          201 GEYDCIFLAAL  211 (286)
Q Consensus       201 ~~fD~V~~aal  211 (286)
                      +..|+++..+.
T Consensus        75 g~iDilVnnAg   85 (244)
T d1pr9a_          75 GPVDLLVNNAA   85 (244)
T ss_dssp             CCCCEEEECCC
T ss_pred             CCceEEEeccc
Confidence            67898775553

>d1rp0a1 c.3.1.6 (A:7-284) Thiazole biosynthetic enzyme Thi4 {Thale cress(Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Thi4-like
domain: Thiazole biosynthetic enzyme Thi4
species: Thale cress(Arabidopsis thaliana) [TaxId: 3702]

Probab=83.41  E-value=0.3  Score=40.72  Aligned_cols=36  Identities=17%  Similarity=0.269  Sum_probs=29.2

Q ss_pred             CCCEEEEeccCCChhhHHH-HHhhcCCCcEEEEEeCChH
Q 042119          130 QPKKVAFVGSGPMPLTSII-MAKHHLTSTHFDNFDIDEA  167 (286)
Q Consensus       130 ~~~~VL~IG~G~lp~tai~-lA~~~~~g~~V~~iDid~~  167 (286)
                      ....|+.||+||.|+++.. ||+  ..|.+|+.+|..+.
T Consensus        32 ~e~DViVIGaGpaGL~aA~~LA~--~~G~~V~vlE~~~~   68 (278)
T d1rp0a1          32 AETDVVVVGAGSAGLSAAYEISK--NPNVQVAIIEQSVS   68 (278)
T ss_dssp             TEEEEEEECCSHHHHHHHHHHHT--STTSCEEEEESSSS
T ss_pred             cCCCEEEECCCHHHHHHHHHHHH--ccCCeEEEEecCCC
Confidence            4567999999999987754 666  36999999998864

>d3grsa1 c.3.1.5 (A:18-165,A:291-363) Glutathione reductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=83.41  E-value=0.28  Score=38.91  Aligned_cols=32  Identities=16%  Similarity=0.134  Sum_probs=27.1

Q ss_pred             EEEEeccCCChhhHHHHHhhcCCCcEEEEEeCCh
Q 042119          133 KVAFVGSGPMPLTSIIMAKHHLTSTHFDNFDIDE  166 (286)
Q Consensus       133 ~VL~IG~G~lp~tai~lA~~~~~g~~V~~iDid~  166 (286)
                      -|+.||+||.|+++...|.+  .|.+|+.||.++
T Consensus         5 DviIIG~GpaG~~aA~~aar--~G~kV~vIEk~~   36 (221)
T d3grsa1           5 DYLVIGGGSGGLASARRAAE--LGARAAVVESHK   36 (221)
T ss_dssp             SEEEECCSHHHHHHHHHHHH--TTCCEEEEESSC
T ss_pred             CEEEECCCHHHHHHHHHHHH--CCCEEEEEeccC
Confidence            37899999999999877774  789999999764

>d2gv8a1 c.3.1.5 (A:3-180,A:288-444) Flavin-dependent monoxygenase SPBP16F5.08c {Schizosaccharomyces pombe [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Flavin-dependent monoxygenase SPBP16F5.08c
species: Schizosaccharomyces pombe [TaxId: 4896]

Probab=83.32  E-value=0.37  Score=41.17  Aligned_cols=34  Identities=21%  Similarity=0.394  Sum_probs=26.6

Q ss_pred             CEEEEeccCCChhhHH-HHHhhcCCCcEEEEEeCCh
Q 042119          132 KKVAFVGSGPMPLTSI-IMAKHHLTSTHFDNFDIDE  166 (286)
Q Consensus       132 ~~VL~IG~G~lp~tai-~lA~~~~~g~~V~~iDid~  166 (286)
                      +||+.||+|+.|+++. .|++ ...+..|+.+|..+
T Consensus         5 KrVaIIGaG~sGl~~A~~L~~-~~~~~~v~vfEk~~   39 (335)
T d2gv8a1           5 RKIAIIGAGPSGLVTAKALLA-EKAFDQVTLFERRG   39 (335)
T ss_dssp             CEEEEECCSHHHHHHHHHHHT-TTCCSEEEEECSSS
T ss_pred             CeEEEECcCHHHHHHHHHHHH-hCCCCCEEEEECCC
Confidence            6999999999998776 4554 23446999999985

>d2cvza2 c.2.1.6 (A:2-157) Hydroxyisobutyrate dehydrogenase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Hydroxyisobutyrate dehydrogenase
species: Thermus thermophilus [TaxId: 274]

Probab=82.66  E-value=1.1  Score=34.15  Aligned_cols=88  Identities=22%  Similarity=0.235  Sum_probs=47.5

Q ss_pred             CEEEEeccCCChhhHHHHHhhcC-CCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEccccchhhcCCCcceeehhh
Q 042119          132 KKVAFVGSGPMPLTSIIMAKHHL-TSTHFDNFDIDEAANDVARSIVASDAEFEGRMKFLTRDIMEVKEQLGEYDCIFLAA  210 (286)
Q Consensus       132 ~~VL~IG~G~lp~tai~lA~~~~-~g~~V~~iDid~~ai~~Ar~~~~~~g~l~~~i~f~~~D~~~~~~~l~~fD~V~~aa  210 (286)
                      .||.+||.|.||..   ||++.. .|..++..|..+.+.+.+    +..+.    .   ....    ......|++++..
T Consensus         1 ekIg~IGlG~MG~~---ma~~L~~~g~~~~~~~~~~~~~~~~----~~~~~----~---~~~~----~~~~~~~~~i~~~   62 (156)
T d2cvza2           1 EKVAFIGLGAMGYP---MAGHLARRFPTLVWNRTFEKALRHQ----EEFGS----E---AVPL----ERVAEARVIFTCL   62 (156)
T ss_dssp             CCEEEECCSTTHHH---HHHHHHTTSCEEEECSSTHHHHHHH----HHHCC----E---ECCG----GGGGGCSEEEECC
T ss_pred             CeEEEEeHHHHHHH---HHHHHHhCCCEEEEeCCHHHHHHHH----HHcCC----c---cccc----ccccceeEEEecc
Confidence            37999999999854   444322 345554444444443332    22331    1   1111    1122456666442


Q ss_pred             hccCChhHHHHHHHHHHhhccCCcEEEEee
Q 042119          211 LVGMSKEEKLTILGHIRKYMKDGGILLVRS  240 (286)
Q Consensus       211 lvg~~~~~k~~vl~~l~~~l~pgg~lv~r~  240 (286)
                      .   +.+.=......+...+++|.+++..+
T Consensus        63 ~---~~~~v~~~~~~l~~~~~~~~~iid~s   89 (156)
T d2cvza2          63 P---TTREVYEVAEALYPYLREGTYWVDAT   89 (156)
T ss_dssp             S---SHHHHHHHHHHHTTTCCTTEEEEECS
T ss_pred             c---chhhhhhhhccccccccccccccccc
Confidence            2   12344467788888888888887654

>d1fl2a1 c.3.1.5 (A:212-325,A:452-521) Alkyl hydroperoxide reductase subunit F (AhpF), C-terminal domains {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Alkyl hydroperoxide reductase subunit F (AhpF), C-terminal domains
species: Escherichia coli [TaxId: 562]

Probab=82.42  E-value=0.31  Score=37.46  Aligned_cols=30  Identities=23%  Similarity=0.302  Sum_probs=25.3

Q ss_pred             EEEEeccCCChhhHHHHHhhcCCCcEEEEEeC
Q 042119          133 KVAFVGSGPMPLTSIIMAKHHLTSTHFDNFDI  164 (286)
Q Consensus       133 ~VL~IG~G~lp~tai~lA~~~~~g~~V~~iDi  164 (286)
                      .|+.||+||.|+++-..|.+  .|.+|+.||.
T Consensus         3 DViIIGgGpaGl~AAi~aar--~G~~v~iie~   32 (184)
T d1fl2a1           3 DVLIVGSGPAGAAAAIYSAR--KGIRTGLMGE   32 (184)
T ss_dssp             EEEEECCSHHHHHHHHHHHT--TTCCEEEECS
T ss_pred             cEEEECcCHHHHHHHHHHHH--cCCeEEEEEE
Confidence            48999999999987777663  7899999985

>d1nhpa1 c.3.1.5 (A:1-119,A:243-321) NADH peroxidase {Enterococcus faecalis [TaxId: 1351]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH peroxidase
species: Enterococcus faecalis [TaxId: 1351]

Probab=82.37  E-value=0.44  Score=37.40  Aligned_cols=35  Identities=11%  Similarity=0.109  Sum_probs=28.5

Q ss_pred             CEEEEeccCCChhhHHHHHhhcCCCcEEEEEeCCh
Q 042119          132 KKVAFVGSGPMPLTSIIMAKHHLTSTHFDNFDIDE  166 (286)
Q Consensus       132 ~~VL~IG~G~lp~tai~lA~~~~~g~~V~~iDid~  166 (286)
                      +||+.||+|+.|+.+..-.++..++.+|+-++.++
T Consensus         1 ~KVvIIGgG~~G~e~A~~l~~~~~~~~V~v~~~~~   35 (198)
T d1nhpa1           1 MKVIVLGSSHGGYEAVEELLNLHPDAEIQWYEKGD   35 (198)
T ss_dssp             CEEEEECSSHHHHHHHHHHHHHCTTSEEEEEESSS
T ss_pred             CEEEEECCcHHHHHHHHHHHhcCCCCeEEEEeCCC
Confidence            58999999998888766555567889999998754

>d1v59a1 c.3.1.5 (A:1-160,A:283-355) Dihydrolipoamide dehydrogenase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=81.87  E-value=0.35  Score=38.40  Aligned_cols=31  Identities=19%  Similarity=0.288  Sum_probs=25.7

Q ss_pred             EEEEeccCCChhhH-HHHHhhcCCCcEEEEEeCCh
Q 042119          133 KVAFVGSGPMPLTS-IIMAKHHLTSTHFDNFDIDE  166 (286)
Q Consensus       133 ~VL~IG~G~lp~ta-i~lA~~~~~g~~V~~iDid~  166 (286)
                      .|+.||+||.|+++ +.+|+   .|.+|+.||..+
T Consensus         7 DviVIG~GpAGl~aA~~aa~---~G~kV~lie~~~   38 (233)
T d1v59a1           7 DVVIIGGGPAGYVAAIKAAQ---LGFNTACVEKRG   38 (233)
T ss_dssp             EEEEECCSHHHHHHHHHHHH---TTCCEEEEESSS
T ss_pred             CEEEECCCHHHHHHHHHHHH---CCCcEEEEEecC
Confidence            68999999999987 55555   799999999764

>d1booa_ c.66.1.11 (A:) m.PvuII N4 cytosine-specific DNA methyltransferase {Proteus vulgaris [TaxId: 585]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Type II DNA methylase
domain: m.PvuII N4 cytosine-specific DNA methyltransferase
species: Proteus vulgaris [TaxId: 585]

Probab=81.78  E-value=0.88  Score=37.80  Aligned_cols=59  Identities=15%  Similarity=0.161  Sum_probs=41.4

Q ss_pred             hhhhHHHHHHHHhcCCCCCCEEEEeccCCChhhHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhc
Q 042119          113 VKLSKLEYTILSENGVVQPKKVAFVGSGPMPLTSIIMAKHHLTSTHFDNFDIDEAANDVARSIVASD  179 (286)
Q Consensus       113 ~~l~~~E~~~l~~~~~~~~~~VL~IG~G~lp~tai~lA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~  179 (286)
                      +.|++.=+...    ..++..|||.=+|. |.|++. |.  ..|-+++|+|+|++.++.|++.+...
T Consensus       237 ~~L~~rlI~~~----s~~gdiVlDpF~GS-GTT~~A-A~--~lgR~~Ig~El~~~y~~~a~~Rl~~~  295 (320)
T d1booa_         237 AKLPEFFIRML----TEPDDLVVDIFGGS-NTTGLV-AE--RESRKWISFEMKPEYVAASAFRFLDN  295 (320)
T ss_dssp             THHHHHHHHHH----CCTTCEEEETTCTT-CHHHHH-HH--HTTCEEEEEESCHHHHHHHHGGGSCS
T ss_pred             hHHHHHhhhhc----ccCCCEEEecCCCC-cHHHHH-HH--HcCCcEEEEeCCHHHHHHHHHHHHhc
Confidence            45554433322    36889999977774 445443 33  37999999999999999999886543

>d1cyda_ c.2.1.2 (A:) Carbonyl reductase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Carbonyl reductase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=81.65  E-value=3.5  Score=33.52  Aligned_cols=70  Identities=9%  Similarity=0.056  Sum_probs=48.4

Q ss_pred             CCCEEEEeccCCChhh---HHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEccccchh------hcC
Q 042119          130 QPKKVAFVGSGPMPLT---SIIMAKHHLTSTHFDNFDIDEAANDVARSIVASDAEFEGRMKFLTRDIMEVK------EQL  200 (286)
Q Consensus       130 ~~~~VL~IG~G~lp~t---ai~lA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~g~l~~~i~f~~~D~~~~~------~~l  200 (286)
                      .++++|.-|++ .|+.   +..|++   .|++|+.+|++++.++..   .+..+    .+.+++.|+.+..      ..+
T Consensus         4 ~GK~alITGas-~GIG~aia~~la~---~Ga~V~~~~r~~~~l~~~---~~~~~----~~~~~~~Dv~~~~~v~~~~~~~   72 (242)
T d1cyda_           4 SGLRALVTGAG-KGIGRDTVKALHA---SGAKVVAVTRTNSDLVSL---AKECP----GIEPVCVDLGDWDATEKALGGI   72 (242)
T ss_dssp             TTCEEEEESTT-SHHHHHHHHHHHH---TTCEEEEEESCHHHHHHH---HHHST----TCEEEECCTTCHHHHHHHHTTC
T ss_pred             CCCEEEEeCCC-cHHHHHHHHHHHH---CCCEEEEEECCHHHHHHH---HHhcC----CCeEEEEeCCCHHHHHHHHHHc
Confidence            47899999986 4553   444555   899999999998765433   33333    4788899987632      245


Q ss_pred             CCcceeehhh
Q 042119          201 GEYDCIFLAA  210 (286)
Q Consensus       201 ~~fD~V~~aa  210 (286)
                      +..|+++..+
T Consensus        73 g~iDilVnnA   82 (242)
T d1cyda_          73 GPVDLLVNNA   82 (242)
T ss_dssp             CCCSEEEECC
T ss_pred             CCCeEEEECC
Confidence            6789877554

>d1vlva2 c.78.1.1 (A:153-313) Ornithine transcarbamoylase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: ATC-like
superfamily: Aspartate/ornithine carbamoyltransferase
family: Aspartate/ornithine carbamoyltransferase
domain: Ornithine transcarbamoylase
species: Thermotoga maritima [TaxId: 2336]

Probab=81.52  E-value=1.4  Score=33.85  Aligned_cols=75  Identities=17%  Similarity=0.310  Sum_probs=52.0

Q ss_pred             CCCEEEEeccCC--ChhhHHHHHhhcCCCcEEEE-----EeCChHHHHHHHHHHHhcCCCCCCeEEEEccccchhhcCCC
Q 042119          130 QPKKVAFVGSGP--MPLTSIIMAKHHLTSTHFDN-----FDIDEAANDVARSIVASDAEFEGRMKFLTRDIMEVKEQLGE  202 (286)
Q Consensus       130 ~~~~VL~IG~G~--lp~tai~lA~~~~~g~~V~~-----iDid~~ai~~Ar~~~~~~g~l~~~i~f~~~D~~~~~~~l~~  202 (286)
                      .|.+|++||-|.  ..-|.+.++..  .|.+|+.     ++.+++....+++.....|   .++.+. -|.   .....+
T Consensus         2 ~g~ki~~vGD~~nnV~~Sli~~~~~--~g~~i~~~~P~~~~~~~~~~~~~~~~~~~~~---~~i~~~-~d~---~~ai~~   72 (161)
T d1vlva2           2 KGVKVVFMGDTRNNVATSLMIACAK--MGMNFVACGPEELKPRSDVFKRCQEIVKETD---GSVSFT-SNL---EEALAG   72 (161)
T ss_dssp             TTCEEEEESCTTSHHHHHHHHHHHH--TTCEEEEESCGGGCCCHHHHHHHHHHHHHHC---CEEEEE-SCH---HHHHTT
T ss_pred             CCCEEEEEcCCccHHHHHHHHHHHH--cCCEEEEecchhhhhhhhHHHHHHHHHhhcC---CceEEE-ecH---HHhhhh
Confidence            478999999762  46677766663  5888774     4667788889999888877   456553 332   334467


Q ss_pred             cceeehhhhcc
Q 042119          203 YDCIFLAALVG  213 (286)
Q Consensus       203 fD~V~~aalvg  213 (286)
                      .|+|+......
T Consensus        73 aDviyt~~~q~   83 (161)
T d1vlva2          73 ADVVYTDVWAS   83 (161)
T ss_dssp             CSEEEECCCC-
T ss_pred             hhheeccceee
Confidence            89999876653

>d1jaya_ c.2.1.6 (A:) Coenzyme F420H2:NADP+ oxidoreductase (FNO) {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Coenzyme F420H2:NADP+ oxidoreductase (FNO)
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=81.47  E-value=1.5  Score=32.82  Aligned_cols=46  Identities=15%  Similarity=0.066  Sum_probs=33.6

Q ss_pred             CEEEEe-ccCCChhhHH-HHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcC
Q 042119          132 KKVAFV-GSGPMPLTSI-IMAKHHLTSTHFDNFDIDEAANDVARSIVASDA  180 (286)
Q Consensus       132 ~~VL~I-G~G~lp~tai-~lA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~g  180 (286)
                      +||..| |+|.+|.+.- .||   ..|.+|+..+++++.++...+.+...+
T Consensus         1 Mki~vigGaG~iG~alA~~la---~~G~~V~l~~R~~e~~~~l~~~i~~~~   48 (212)
T d1jaya_           1 MRVALLGGTGNLGKGLALRLA---TLGHEIVVGSRREEKAEAKAAEYRRIA   48 (212)
T ss_dssp             CEEEEETTTSHHHHHHHHHHH---TTTCEEEEEESSHHHHHHHHHHHHHHH
T ss_pred             CEEEEEeCCcHHHHHHHHHHH---HCCCEEEEEECCHHHHHHHHHHHHhcC
Confidence            589999 7887776532 333   379999999999988776666555444

>d5mdha1 c.2.1.5 (A:1-154) Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=81.36  E-value=4.3  Score=30.65  Aligned_cols=106  Identities=16%  Similarity=0.205  Sum_probs=54.1

Q ss_pred             CCCEEEEec-cCCChhhHHHH-HhhcC----CCcEEEEEeCChHHHHHHHHHH---HhcCCCCCCeEEEEccccchhhcC
Q 042119          130 QPKKVAFVG-SGPMPLTSIIM-AKHHL----TSTHFDNFDIDEAANDVARSIV---ASDAEFEGRMKFLTRDIMEVKEQL  200 (286)
Q Consensus       130 ~~~~VL~IG-~G~lp~tai~l-A~~~~----~g~~V~~iDid~~ai~~Ar~~~---~~~g~l~~~i~f~~~D~~~~~~~l  200 (286)
                      .|.||..|| +|..|.+.... +....    .-..++-+|+++. .+.++.+.   .... ......+...+-  ....+
T Consensus         2 ~p~KV~IiGA~G~VG~~la~~l~~~~~~~~~~~~~L~l~d~~~~-~~~~~~l~~~~~~~~-~~~~~~~~~~~~--~~~~~   77 (154)
T d5mdha1           2 EPIRVLVTGAAGQIAYSLLYSIGNGSVFGKDQPIILVLLDITPM-MGVLDGVLMELQDCA-LPLLKDVIATDK--EEIAF   77 (154)
T ss_dssp             CCEEEEESSTTSHHHHTTHHHHHTTTTTCTTCCEEEEEECCGGG-HHHHHHHHHHHHHTC-CTTEEEEEEESC--HHHHT
T ss_pred             CceEEEEECCCCHHHHHHHHHHHHHHhcCCCCccEEEEecCccc-hhhhhhhhhhhcccc-cccccccccCcc--ccccc
Confidence            578999999 69999886653 32111    1235777887743 33333332   1122 112222332222  22455


Q ss_pred             CCcceeehhhhc----cCChh--------HHHHHHHHHHhhccCCcEEEEe
Q 042119          201 GEYDCIFLAALV----GMSKE--------EKLTILGHIRKYMKDGGILLVR  239 (286)
Q Consensus       201 ~~fD~V~~aalv----g~~~~--------~k~~vl~~l~~~l~pgg~lv~r  239 (286)
                      .+.|+|++.+..    |++..        .-.++...+.++-.+.+++++-
T Consensus        78 ~~~dvVVitag~~~~~g~sr~dll~~N~~i~k~~~~~i~k~a~~~~~iivv  128 (154)
T d5mdha1          78 KDLDVAILVGSMPRRDGMERKDLLKANVKIFKCQGAALDKYAKKSVKVIVV  128 (154)
T ss_dssp             TTCSEEEECCSCCCCTTCCTTTTHHHHHHHHHHHHHHHHHHSCTTCEEEEC
T ss_pred             CCceEEEEecccCCCCCCchhHHHHHhHHHHHHHHHHHHhhCCCceEEEEe
Confidence            678998877643    33211        1233444555554446655553

>d2naca1 c.2.1.4 (A:148-335) Formate dehydrogenase {Pseudomonas sp., strain 101 [TaxId: 306]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Formate dehydrogenase
species: Pseudomonas sp., strain 101 [TaxId: 306]

Probab=81.28  E-value=0.4  Score=38.28  Aligned_cols=94  Identities=15%  Similarity=0.166  Sum_probs=57.3

Q ss_pred             CCCCEEEEeccCCChhhHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEccccchhhcCCCcceeeh
Q 042119          129 VQPKKVAFVGSGPMPLTSIIMAKHHLTSTHFDNFDIDEAANDVARSIVASDAEFEGRMKFLTRDIMEVKEQLGEYDCIFL  208 (286)
Q Consensus       129 ~~~~~VL~IG~G~lp~tai~lA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~g~l~~~i~f~~~D~~~~~~~l~~fD~V~~  208 (286)
                      -.+++|..||+|.+|.....+++  ..|.+|.++|..+..-..    ....+     +.. ..+.   ..-++..|+|.+
T Consensus        42 l~~~~vgiiG~G~IG~~va~~l~--~fg~~v~~~d~~~~~~~~----~~~~~-----~~~-~~~l---~~~l~~sD~v~~  106 (188)
T d2naca1          42 LEAMHVGTVAAGRIGLAVLRRLA--PFDVHLHYTDRHRLPESV----EKELN-----LTW-HATR---EDMYPVCDVVTL  106 (188)
T ss_dssp             CTTCEEEEECCSHHHHHHHHHHG--GGTCEEEEECSSCCCHHH----HHHHT-----CEE-CSSH---HHHGGGCSEEEE
T ss_pred             ccccceeeccccccchhhhhhhh--ccCceEEEEeeccccccc----ccccc-----ccc-cCCH---HHHHHhccchhh
Confidence            46789999999988876665655  368999999986433222    22233     111 1222   233456898876


Q ss_pred             hhhccCChhHHHHHHHHHHhhccCCcEEEEe
Q 042119          209 AALVGMSKEEKLTILGHIRKYMKDGGILLVR  239 (286)
Q Consensus       209 aalvg~~~~~k~~vl~~l~~~l~pgg~lv~r  239 (286)
                      +.-.  +.+.+.=+=.+....||+|++||--
T Consensus       107 ~~pl--t~~T~~li~~~~l~~mk~ga~lIN~  135 (188)
T d2naca1         107 NCPL--HPETEHMINDETLKLFKRGAYIVNT  135 (188)
T ss_dssp             CSCC--CTTTTTCBSHHHHTTSCTTEEEEEC
T ss_pred             cccc--cccchhhhHHHHHHhCCCCCEEEec
Confidence            5432  2233333445677889998877653

>d1x7da_ c.2.1.13 (A:) Ornithine cyclodeaminase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Ornithine cyclodeaminase-like
domain: Ornithine cyclodeaminase
species: Pseudomonas putida [TaxId: 303]

Probab=81.21  E-value=2.7  Score=36.65  Aligned_cols=100  Identities=16%  Similarity=0.158  Sum_probs=59.5

Q ss_pred             CCCCEEEEeccCCChhhHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEccccchhhcCCCcceeeh
Q 042119          129 VQPKKVAFVGSGPMPLTSIIMAKHHLTSTHFDNFDIDEAANDVARSIVASDAEFEGRMKFLTRDIMEVKEQLGEYDCIFL  208 (286)
Q Consensus       129 ~~~~~VL~IG~G~lp~tai~lA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~g~l~~~i~f~~~D~~~~~~~l~~fD~V~~  208 (286)
                      +..+++..||||+-+..-+......++=.+|..+|+++++.+...+.++..    ..+.+...+-  ........|+|+.
T Consensus       126 ~da~~l~iiG~G~QA~~~~~a~~~v~~i~~V~v~~r~~~~~~~~~~~l~~~----~g~~v~~~~s--~~eav~~ADIi~t  199 (340)
T d1x7da_         126 PNARKMALIGNGAQSEFQALAFHKHLGIEEIVAYDTDPLATAKLIANLKEY----SGLTIRRASS--VAEAVKGVDIITT  199 (340)
T ss_dssp             TTCCEEEEECCSTTHHHHHHHHHHHSCCCEEEEECSSHHHHHHHHHHHTTC----TTCEEEECSS--HHHHHTTCSEEEE
T ss_pred             cCCceEEEEcccHHHHHHHHHHhhhcceeeeEEEecChHHHHHHHHhhhhc----cCCCceecCC--HHHHHhcCCceee
Confidence            566899999999887765554433567789999999998876555444332    1356654432  2233456788875


Q ss_pred             hhhccCChhHHHHHHHHHHhhccCCcEEEEee
Q 042119          209 AALVGMSKEEKLTILGHIRKYMKDGGILLVRS  240 (286)
Q Consensus       209 aalvg~~~~~k~~vl~~l~~~l~pgg~lv~r~  240 (286)
                      +..-. ..++   ++.  ...++||..+..-.
T Consensus       200 ~Tas~-s~~P---v~~--~~~l~pG~hI~aiG  225 (340)
T d1x7da_         200 VTADK-AYAT---IIT--PDMLEPGMHLNAVG  225 (340)
T ss_dssp             CCCCS-SEEE---EEC--GGGCCTTCEEEECS
T ss_pred             ccccC-CCCc---ccc--hhhcCCCCEEeecc
Confidence            32100 0000   111  24678887776654

>d2d1ya1 c.2.1.2 (A:2-249) Hypothetical protein TTHA0369 {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Hypothetical protein TTHA0369
species: Thermus thermophilus [TaxId: 274]

Probab=81.14  E-value=4.4  Score=33.01  Aligned_cols=98  Identities=18%  Similarity=0.273  Sum_probs=61.3

Q ss_pred             CCCEEEEeccCCChhh---HHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEccccchhh--------
Q 042119          130 QPKKVAFVGSGPMPLT---SIIMAKHHLTSTHFDNFDIDEAANDVARSIVASDAEFEGRMKFLTRDIMEVKE--------  198 (286)
Q Consensus       130 ~~~~VL~IG~G~lp~t---ai~lA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~g~l~~~i~f~~~D~~~~~~--------  198 (286)
                      .++.+|.-|++ .|+.   +..||+   .|++|...|++++..+.+++    .+     ..++..|+.+...        
T Consensus         4 ~GK~alITGas-~GIG~aia~~la~---~G~~V~~~~~~~~~~~~~~~----~~-----~~~~~~Dv~~~~~v~~~~~~~   70 (248)
T d2d1ya1           4 AGKGVLVTGGA-RGIGRAIAQAFAR---EGALVALCDLRPEGKEVAEA----IG-----GAFFQVDLEDERERVRFVEEA   70 (248)
T ss_dssp             TTCEEEEETTT-SHHHHHHHHHHHH---TTCEEEEEESSTTHHHHHHH----HT-----CEEEECCTTCHHHHHHHHHHH
T ss_pred             CCCEEEEeCCC-CHHHHHHHHHHHH---CCCEEEEEECCHHHHHHHHH----cC-----CeEEEEeCCCHHHHHHHHHHH
Confidence            57889988875 4554   344555   89999999999987665543    34     3577889876321        


Q ss_pred             --cCCCcceeehhhhc-------cCChhH-----------HHHHHHHHHhhccC--CcEEEEee
Q 042119          199 --QLGEYDCIFLAALV-------GMSKEE-----------KLTILGHIRKYMKD--GGILLVRS  240 (286)
Q Consensus       199 --~l~~fD~V~~aalv-------g~~~~~-----------k~~vl~~l~~~l~p--gg~lv~r~  240 (286)
                        .++..|+++..+-+       .++.++           ...+.+.+.+.|+.  +|.++.-+
T Consensus        71 ~~~~G~iDiLVnnAG~~~~~~~~~~~~e~~~~~~~vNl~g~~~~~~~~~p~m~~~~~G~Ii~is  134 (248)
T d2d1ya1          71 AYALGRVDVLVNNAAIAAPGSALTVRLPEWRRVLEVNLTAPMHLSALAAREMRKVGGGAIVNVA  134 (248)
T ss_dssp             HHHHSCCCEEEECCCCCCCBCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHTTTCEEEEEEC
T ss_pred             HHhcCCCCeEEEeCcCCCCCChhhCCHHHHHHHHHhhhhhHhhhhhhhcccccccccccccccc
Confidence              33568877654422       122233           22345567777755  56766644

>d1yxma1 c.2.1.2 (A:7-303) Peroxisomal trans 2-enoyl CoA reductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Peroxisomal trans 2-enoyl CoA reductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=81.02  E-value=2.7  Score=35.46  Aligned_cols=79  Identities=9%  Similarity=0.051  Sum_probs=54.1

Q ss_pred             CCCCEEEEeccCCChhhH---HHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhc-CC-CCCCeEEEEccccchhh-----
Q 042119          129 VQPKKVAFVGSGPMPLTS---IIMAKHHLTSTHFDNFDIDEAANDVARSIVASD-AE-FEGRMKFLTRDIMEVKE-----  198 (286)
Q Consensus       129 ~~~~~VL~IG~G~lp~ta---i~lA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~-g~-l~~~i~f~~~D~~~~~~-----  198 (286)
                      -.++.++.-|++ .|+..   ..||+   .|++|+..|++++.++.+.+-+.+. .. ...++.++.+|+.+...     
T Consensus        10 L~gKvalITGas-~GIG~aia~~la~---~Ga~Vvi~~r~~~~l~~~~~el~~~~~~~~~~~~~~~~~Dvs~~~~v~~~~   85 (297)
T d1yxma1          10 LQGQVAIVTGGA-TGIGKAIVKELLE---LGSNVVIASRKLERLKSAADELQANLPPTKQARVIPIQCNIRNEEEVNNLV   85 (297)
T ss_dssp             TTTCEEEEETTT-SHHHHHHHHHHHH---TTCEEEEEESCHHHHHHHHHHHHHTSCTTCCCCEEEEECCTTCHHHHHHHH
T ss_pred             CCCCEEEEeCCC-CHHHHHHHHHHHH---CCCEEEEEECCHHHHHHHHHHHHhhhccccCceEEEEeccCCCHHHHHHHH
Confidence            367889998886 46653   34454   7999999999999887666555432 10 23589999999986321     


Q ss_pred             -----cCCCcceeehhhh
Q 042119          199 -----QLGEYDCIFLAAL  211 (286)
Q Consensus       199 -----~l~~fD~V~~aal  211 (286)
                           .++..|+++..+.
T Consensus        86 ~~~~~~~G~iDiLVnnAg  103 (297)
T d1yxma1          86 KSTLDTFGKINFLVNNGG  103 (297)
T ss_dssp             HHHHHHHSCCCEEEECCC
T ss_pred             HHHHHHhCCeEEEEeecc
Confidence                 2356888775553

>d1y1pa1 c.2.1.2 (A:2-343) Aldehyde reductase II {Sporobolomyces salmonicolor [TaxId: 5005]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Aldehyde reductase II
species: Sporobolomyces salmonicolor [TaxId: 5005]

Probab=80.77  E-value=3.3  Score=34.82  Aligned_cols=79  Identities=5%  Similarity=-0.064  Sum_probs=52.9

Q ss_pred             CCCCCEEEEeccCCChhhHHHHHhh-cCCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEccccchh---hcCCCc
Q 042119          128 VVQPKKVAFVGSGPMPLTSIIMAKH-HLTSTHFDNFDIDEAANDVARSIVASDAEFEGRMKFLTRDIMEVK---EQLGEY  203 (286)
Q Consensus       128 ~~~~~~VL~IG~G~lp~tai~lA~~-~~~g~~V~~iDid~~ai~~Ar~~~~~~g~l~~~i~f~~~D~~~~~---~~l~~f  203 (286)
                      ++++++||..|+.  |+-.-.+++. ...|.+|+++..++...+.-++...... ......++.+|+.+..   ..+.+.
T Consensus         8 ~~~gk~VlVTG~s--GfIGs~l~~~Ll~~G~~V~~~vR~~~~~~~~~~~~~~~~-~~~~~~~~~~Dl~~~~~~~~~~~~~   84 (342)
T d1y1pa1           8 LPEGSLVLVTGAN--GFVASHVVEQLLEHGYKVRGTARSASKLANLQKRWDAKY-PGRFETAVVEDMLKQGAYDEVIKGA   84 (342)
T ss_dssp             SCTTCEEEEETTT--SHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHHHHS-TTTEEEEECSCTTSTTTTTTTTTTC
T ss_pred             CCCcCEEEEECCC--CHHHHHHHHHHHHCcCEEEEEeCCchhHHHHHHhhhccc-cccccEEEeccccchhhhhhhcccc
Confidence            4678999999985  5555555543 1258999999999887776666555444 3455667888886532   233567


Q ss_pred             ceeehh
Q 042119          204 DCIFLA  209 (286)
Q Consensus       204 D~V~~a  209 (286)
                      |+|+..
T Consensus        85 ~~v~~~   90 (342)
T d1y1pa1          85 AGVAHI   90 (342)
T ss_dssp             SEEEEC
T ss_pred             hhhhhh
Confidence            877643

>d1lvla1 c.3.1.5 (A:1-150,A:266-335) Dihydrolipoamide dehydrogenase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Pseudomonas putida [TaxId: 303]

Probab=80.54  E-value=0.3  Score=38.98  Aligned_cols=33  Identities=15%  Similarity=0.148  Sum_probs=28.6

Q ss_pred             CCEEEEeccCCChhhHHHHHhhcCCCcEEEEEeCC
Q 042119          131 PKKVAFVGSGPMPLTSIIMAKHHLTSTHFDNFDID  165 (286)
Q Consensus       131 ~~~VL~IG~G~lp~tai~lA~~~~~g~~V~~iDid  165 (286)
                      ...|+.||+||.|+++...|.+  .|.+|+.||.+
T Consensus         5 ~~DlvVIG~GpaGl~aA~~aa~--~G~~V~liE~~   37 (220)
T d1lvla1           5 QTTLLIIGGGPGGYVAAIRAGQ--LGIPTVLVEGQ   37 (220)
T ss_dssp             ECSEEEECCSHHHHHHHHHHHH--HTCCEEEECSS
T ss_pred             ccCEEEECCCHHHHHHHHHHHH--CCCcEEEEecC
Confidence            3579999999999999888874  78999999976

>d2bcgg1 c.3.1.3 (G:5-301) Guanine nucleotide dissociation inhibitor, GDI {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: GDI-like N domain
domain: Guanine nucleotide dissociation inhibitor, GDI
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=80.09  E-value=0.43  Score=36.74  Aligned_cols=32  Identities=13%  Similarity=0.115  Sum_probs=26.3

Q ss_pred             EEEEeccCCChhhHHHHHhhcCCCcEEEEEeCCh
Q 042119          133 KVAFVGSGPMPLTSIIMAKHHLTSTHFDNFDIDE  166 (286)
Q Consensus       133 ~VL~IG~G~lp~tai~lA~~~~~g~~V~~iDid~  166 (286)
                      .|+.||+|..|+++.....+  .|.+|+.+|..+
T Consensus         7 DviViGaG~~Gl~~A~~La~--~G~~V~vlE~~~   38 (297)
T d2bcgg1           7 DVIVLGTGITECILSGLLSV--DGKKVLHIDKQD   38 (297)
T ss_dssp             SEEEECCSHHHHHHHHHHHH--TTCCEEEECSSS
T ss_pred             CEEEECcCHHHHHHHHHHHH--CCCCEEEEcCCC
Confidence            58999999999887665543  789999999975

>d1dcfa_ c.23.1.2 (A:) Receiver domain of the ethylene receptor {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: CheY-like
family: Receiver domain of the ethylene receptor
domain: Receiver domain of the ethylene receptor
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=80.09  E-value=3.9  Score=30.05  Aligned_cols=71  Identities=13%  Similarity=0.128  Sum_probs=51.0

Q ss_pred             CCCcEEEEEeCChHHHHHHHHHHHhcCCCCCCeEEEEccccchhhcC-CCcceeehhhhccCChhHHHHHHHHHHhhc
Q 042119          154 LTSTHFDNFDIDEAANDVARSIVASDAEFEGRMKFLTRDIMEVKEQL-GEYDCIFLAALVGMSKEEKLTILGHIRKYM  230 (286)
Q Consensus       154 ~~g~~V~~iDid~~ai~~Ar~~~~~~g~l~~~i~f~~~D~~~~~~~l-~~fD~V~~aalvg~~~~~k~~vl~~l~~~l  230 (286)
                      +.|.+|..+|=++......++.++..| .  ++. .+.|+.+....+ ..||+|+++...  +.-+-.++++++++..
T Consensus         5 ~~g~rILvVDD~~~~~~~l~~~L~~~G-~--~v~-~a~~g~eal~~l~~~~dlillD~~m--P~~dG~el~~~ir~~~   76 (134)
T d1dcfa_           5 FTGLKVLVMDENGVSRMVTKGLLVHLG-C--EVT-TVSSNEECLRVVSHEHKVVFMDVCM--PGVENYQIALRIHEKF   76 (134)
T ss_dssp             CTTCEEEEECSCHHHHHHHHHHHHHTT-C--EEE-EESSHHHHHHHCCTTCSEEEEECCS--STTTTTHHHHHHHHHH
T ss_pred             CCCCEEEEEeCCHHHHHHHHHHHHHCC-C--EEE-EECCHHHHHHHhhcCCCeEEEEecc--CCCchHHHHHHHHHhc
Confidence            568999999999999999999999999 3  343 456666655444 369999988543  3334456777776543

>d1eg2a_ c.66.1.11 (A:) m.RsrI N6 adenosine-specific DNA methyltransferase {Rhodobacter sphaeroides [TaxId: 1063]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Type II DNA methylase
domain: m.RsrI N6 adenosine-specific DNA methyltransferase
species: Rhodobacter sphaeroides [TaxId: 1063]

Probab=80.06  E-value=1.4  Score=35.82  Aligned_cols=60  Identities=8%  Similarity=-0.079  Sum_probs=42.2

Q ss_pred             hhhhHHHHHHHHhcCCCCCCEEEEeccCCChhhHHHHHhhcCCCcEEEEEeCChHHHHHHHHHHHhcC
Q 042119          113 VKLSKLEYTILSENGVVQPKKVAFVGSGPMPLTSIIMAKHHLTSTHFDNFDIDEAANDVARSIVASDA  180 (286)
Q Consensus       113 ~~l~~~E~~~l~~~~~~~~~~VL~IG~G~lp~tai~lA~~~~~g~~V~~iDid~~ai~~Ar~~~~~~g  180 (286)
                      +.|++.=+...    ..+++.|||-=+|. |.|++.-.+   .|-+++|+|+|++..+.|++.++...
T Consensus       194 ~~L~~~~I~~~----s~~gdiVLDpF~GS-GTT~~Aa~~---lgR~~ig~El~~~y~~~a~~Ri~~~~  253 (279)
T d1eg2a_         194 AAVIERLVRAL----SHPGSTVLDFFAGS-GVTARVAIQ---EGRNSICTDAAPVFKEYYQKQLTFLQ  253 (279)
T ss_dssp             HHHHHHHHHHH----SCTTCEEEETTCTT-CHHHHHHHH---HTCEEEEEESSTHHHHHHHHHHHHC-
T ss_pred             hhHHHHHHHhh----cCCCCEEEecCCCC-cHHHHHHHH---hCCeEEEEeCCHHHHHHHHHHHHHhh
Confidence            45555433332    36889999876663 445444333   68899999999999999999998754