Citrus Sinensis ID: 042138

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-----
Protein Sequence
MTLSATFNAIKSSNVISWKSTGRLQQTLAGFIEKTGKTLHSGNVSTVRLCPEFAGKGRYFEFRSRLIPASIDFAKESPLCTTLFKDGVQIRTVEHLLSALEAKGVDNCKIEIHNMVADDQDVEAEVPIFDGSASAWAEAIEQVGLKRPWIREDSFVAAFPSQKVQISYGIDFPQVPAIGCQWFSTTPLEGTCYAMHIASSRTFCIYEEVERMCNAGLIKGGSLDNAIVCSASEGWLNPPLRFPDEPCRHKLLDFVGDLSLFARNGSQGLPVAHMVAFKGGHALHVDFARRLSGVM
Secondary Structure (PSIPRED)
ccccccccccccccccccccccccccccccEEEEEEEEEEcccEEEEEEEcccccccEEEEEcccEEEcccccccccccEEEEEEccEEEEEHHHHHHHHHHccccEEEEEEEEccccccccccccccccccHHHHHHHHHHccccccEEEEcEEEEEEcccccEEEEEEEcccccccccEEEEEccccHHHHHHHcccccccccHHHHHHHHHcccccccccccEEEEcccccccccccccccccccccHHHHHHHHHcccccccccccEEEEEEEcccHHHHHHHHHHHHHHc
Secondary Structure Prediction (SSPRO)
ccHHHHHHHccccccEEEccccHHHHHHHHHHHHcccccccccEEEEEEcccccccEEEEEEEcccccccHHHcccccEEEEEEccccEEcHHHHHHHHHHHcccccEEEEEccccccccccccccccccccHHHHHHHHHHccccEEEEccccEEEEEccccEEEEEEEEcccccEcccccEEEEEcccHHHHHHccccccEEEHHHHHHHHHccccccccccccEEEccccEccccccccccHHHHHHHHHHHHHHHHccccccccEEEEEEEEEcccHHHHHHHHHHHHHHc
Coil and Loop (DISEMBL)
MTLSATFnaikssnviswkSTGRLQQTLAGFIEKTgktlhsgnvstvrlcpefagkgryfefrsrlipasidfakesplcttlfkdgVQIRTVEHLLSALEakgvdnckiEIHNmvaddqdveaevpifdgsASAWAEAIEQVglkrpwiredsfvaafpsqkvqisygidfpqvpaigcqwfsttplegtcYAMHIASSRTFCIYEEVERMCNAglikggsldnaivcsasegwlnpplrfpdepcrhkLLDFVGDLSLFarngsqglpvahmvafkgghalHVDFARRLSGVM
Flexible Loop (DISEMBL)
mtlsatfnaikssnviswkstgRLQQTLAGFIEKTgktlhsgnvstvrLCPEFAGKGRYFEFRSRLIPASIDFAKESPLCTTLFKDGVQIRTVEHLLSALEAKGVDNCKIEIHNMVADDQDVEAEVPIFDGSASAWAEAIEQVGLKRPWIREDSFVAAFPSQKVQISYGIDFPQVPAIGCQWFSTTPLEGTCYAMHIASSRTFCIYEEVERMCNAGLIKGGSLDNAIVCSASEGWLNPPLRFPDEPCRHKLLDFVGDLSLFARNGSQGLPVAHMVAFKGGHALHVDFARRLSGVM
Low Complexity Region (SEG)
MTLSATFNAIKSSNVISWKSTGRLQQTLAGFIEKTGKTLHSGNVSTVRLCPEFAGKGRYFEFRSRLIPASIDFAKESPLCTTLFKDGVQIRTVEHLLSALEAKGVDNCKIEIHNMVADDQDVEAEVPIFDGSASAWAEAIEQVGLKRPWIREDSFVAAFPSQKVQISYGIDFPQVPAIGCQWFSTTPLEGTCYAMHIASSRTFCIYEEVERMCNAGLIKGGSLDNAIVCSASEGWLNPPLRFPDEPCRHKLLDFVGDLSLFARNGSQGLPVAHMVAFKGGHALHVDFARRLSGVM
Disordered region (IsUnstruct)
*********IKSSNVISWKSTGRLQQTLAGFIEKTGKTLHSGNVSTVRLCPEFAGKGRYFEFRSRLIPASIDFAKESPLCTTLFKDGVQIRTVEHLLSALEAKGVDNCKIEIHNMVADDQDVEAEVPIFDGSASAWAEAIEQVGLKRPWIREDSFVAAFPSQKVQISYGIDFPQVPAIGCQWFSTTPLEGTCYAMHIASSRTFCIYEEVERMCNAGLIKGGSLDNAIVCSASEGWLNPPLRFPDEPCRHKLLDFVGDLSLFARNGSQGLPVAHMVAFKGGHALHVDFAR******
Disordered Region (DISOPRED)
**********************RLQQTLAGFIEKTGKTLHSGNVSTVRLCPEFAGKGRYFEFRSRLIPASIDFAKESPLCTTLFKDGVQIRTVEHLLSALEAKGVDNCKIEIHNMVADDQDVEAEVPIFDGSASAWAEAIEQVGLKRPWIREDSFVAAFPSQKVQISYGIDFPQVPAIGCQWFSTTPLEGTCYAMHIASSRTFCIYEEVERMCNAGLIKGGSLDNAIVCSASEGWLNPPLRFPDEPCRHKLLDFVGDLSLFARNGSQGLPVAHMVAFKGGHALHVDFARRLSGVM
Disordered Region (DISEMBL)
MTLSATFNAIKSSNVISWKSTGRLQQTLAGFIEKTGKTLHSGNVSTVRLCPEFAGKGRYFEFRSRLIPASIDFAKESPLCTTLFKDGVQIRTVEHLLSALEAKGVDNCKIEIHNMVADDQDVEAEVPIFDGSASAWAEAIEQVGLKRPWIREDSFVAAFPSQKVQISYGIDFPQVPAIGCQWFSTTPLEGTCYAMHIASSRTFCIYEEVERMCNAGLIKGGSLDNAIVCSASEGWLNPPLRFPDEPCRHKLLDFVGDLSLFARNGSQGLPVAHMVAFKGGHALHVDFARRLSGVM
Disordered Region (DISPRO)
*************NVISWKSTGRLQQTLAGFIEKTGKTLHSGNVSTVRLCPEFAGKGRYFEFRSRLIPASIDFAKESPLCTTLFKDGVQIRTVEHLLSALEAKGVDNCKIEIHNM******VEAEVPIFDGSASAWAEAIEQVGLKRPWIREDSFVAAFPSQKVQISYGIDFPQVPAIGCQWFSTTPLEGTCYAMHIASSRTFCIYEEVERMCNAGLIKGGSLDNAIVCSASEGWLNPPLRFPDEPCRHKLLDFVGDLSLFARNGSQGLPVAHMVAFKGGHALHVDFARRLSGVM
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MTLSATFNAIKSSNVISWKSTGRLQQTLAGFIEKTGKTLHSGNVSTVRLCPEFAGKGRYFEFRSRLIPASIDFAKESPLCTTLFKDGVQIRTVEHLLSALEAKGVDNCKIEIHNMVADDQDVEAEVPIFDGSASAWAEAIEQVGLKRPWIREDSFVAAFPSQKVQISYGIDFPQVPAIGCQWFSTTPLEGTCYAMHIASSRTFCIYEEVERMCNAGLIKGGSLDNAIVCSASEGWLNPPLRFPDEPCRHKLLDFVGDLSLFARNGSQGLPVAHMVAFKGGHALHVDFARRLSGVM
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	295	2.2.26 [Sep-21-2011]
F4IAW1	326	Probable UDP-3-O-[3-hydro	no	no	0.962	0.871	0.620	1e-107
P0DKB9	326	Probable UDP-3-O-[3-hydro	no	no	0.962	0.871	0.620	1e-107
P0DKB8	326	Probable UDP-3-O-[3-hydro	no	no	0.962	0.871	0.620	1e-107
P0DKB7	326	Probable UDP-3-O-[3-hydro	no	no	0.962	0.871	0.620	1e-107
F4IAT8	326	Probable UDP-3-O-[3-hydro	no	no	0.962	0.871	0.620	1e-107
Q3MH15	280	UDP-3-O-[3-hydroxymyristo	yes	no	0.850	0.896	0.446	2e-58
B2IWK6	292	UDP-3-O-[3-hydroxymyristo	yes	no	0.847	0.856	0.455	9e-58
Q8YUR5	280	UDP-3-O-[3-hydroxymyristo	yes	no	0.850	0.896	0.442	3e-57
Q8DI02	285	UDP-3-O-[3-hydroxymyristo	yes	no	0.844	0.873	0.433	3e-54
B7KKQ2	293	UDP-3-O-[3-hydroxymyristo	yes	no	0.857	0.863	0.396	4e-53

>sp|F4IAW1|LPXC5_ARATH Probable UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase 5 OS=Arabidopsis thaliana GN=LPXC5 PE=2 SV=2

 Score =  387 bits (994), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 190/306 (62%), Positives = 231/306 (75%), Gaps = 22/306 (7%)

Query: 7   FNAIKSSNVISWKSTGRLQQTLAGFIEKTGKTLHSGNVSTVRLCPEFAGKGRYFEFRSRL 66
           +++  SS  +S   +GRLQQTLAG +E  GK+LHSG  STV+L PE AG GR+FEFRSR 
Sbjct: 21  YSSAASSPTVSLNPSGRLQQTLAGSVEVKGKSLHSGKFSTVKLNPEIAGAGRFFEFRSRF 80

Query: 67  IPASIDFAKESPLCTTLFKDGVQIRTVEHLLSALEAKGVDNCKIEIHNMVADDQDVEAEV 126
           IPASI+FA+ESPLCTTL KD ++IRTVEHLLSALEAKGVDNC+I+I +  +DD++VE  V
Sbjct: 81  IPASIEFAQESPLCTTLLKDELKIRTVEHLLSALEAKGVDNCRIQIESESSDDREVE--V 138

Query: 127 PIFDGSASAWAEAIEQVGLK------------------RPWI--REDSFVAAFPSQKVQI 166
           PIFDGSA  W +AI+ VG+                   +P    + D+FVAAFP+ + +I
Sbjct: 139 PIFDGSAKEWVDAIQGVGINAAQNHDGESVEKMVAHVNKPVYVCKNDTFVAAFPALETRI 198

Query: 167 SYGIDFPQVPAIGCQWFSTTPLEGTCYAMHIASSRTFCIYEEVERMCNAGLIKGGSLDNA 226
           + GIDFPQVPAIGCQWFS  P+  + +A  IASSRTFC+YEEVERM  AGLIKGGSLDNA
Sbjct: 199 TCGIDFPQVPAIGCQWFSWRPIHESSFAKDIASSRTFCVYEEVERMREAGLIKGGSLDNA 258

Query: 227 IVCSASEGWLNPPLRFPDEPCRHKLLDFVGDLSLFARNGSQGLPVAHMVAFKGGHALHVD 286
           IVCSA  GW+NPPLRF DE CRHK+LD +GDLSL +R G+ GLPVAH+VA+K GHALH D
Sbjct: 259 IVCSAEHGWMNPPLRFDDEACRHKILDLIGDLSLVSRGGNGGLPVAHIVAYKAGHALHTD 318

Query: 287 FARRLS 292
            AR L+
Sbjct: 319 LARHLT 324

Involved in the biosynthesis of lipid A, a phosphorylated glycolipid that in bacteria anchors the lipopolysaccharide to the outer membrane of the cell. Lipid A-like molecules in plants may serve as structural components of the outer membranes of mitochondria and/or chloroplasts, or may be involved in signal transduction or plant defense responses.
Arabidopsis thaliana (taxid: 3702)
EC: 3EC: .EC: 5EC: .EC: 1EC: .EC: -

>sp|P0DKB9|LPXC4_ARATH Probable UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase 4 OS=Arabidopsis thaliana GN=LPXC4 PE=3 SV=1

 Score =  387 bits (994), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 190/306 (62%), Positives = 231/306 (75%), Gaps = 22/306 (7%)

Query: 7   FNAIKSSNVISWKSTGRLQQTLAGFIEKTGKTLHSGNVSTVRLCPEFAGKGRYFEFRSRL 66
           +++  SS  +S   +GRLQQTLAG +E  GK+LHSG  STV+L PE AG GR+FEFRSR 
Sbjct: 21  YSSAASSPTVSLNPSGRLQQTLAGSVEVKGKSLHSGKFSTVKLNPEIAGAGRFFEFRSRF 80

Query: 67  IPASIDFAKESPLCTTLFKDGVQIRTVEHLLSALEAKGVDNCKIEIHNMVADDQDVEAEV 126
           IPASI+FA+ESPLCTTL KD ++IRTVEHLLSALEAKGVDNC+I+I +  +DD++VE  V
Sbjct: 81  IPASIEFAQESPLCTTLLKDELKIRTVEHLLSALEAKGVDNCRIQIESESSDDREVE--V 138

Query: 127 PIFDGSASAWAEAIEQVGLK------------------RPWI--REDSFVAAFPSQKVQI 166
           PIFDGSA  W +AI+ VG+                   +P    + D+FVAAFP+ + +I
Sbjct: 139 PIFDGSAKEWVDAIQGVGINAAQNHDGESVEKMVAHVNKPVYVCKNDTFVAAFPALETRI 198

Query: 167 SYGIDFPQVPAIGCQWFSTTPLEGTCYAMHIASSRTFCIYEEVERMCNAGLIKGGSLDNA 226
           + GIDFPQVPAIGCQWFS  P+  + +A  IASSRTFC+YEEVERM  AGLIKGGSLDNA
Sbjct: 199 TCGIDFPQVPAIGCQWFSWRPIHESSFAKDIASSRTFCVYEEVERMREAGLIKGGSLDNA 258

Query: 227 IVCSASEGWLNPPLRFPDEPCRHKLLDFVGDLSLFARNGSQGLPVAHMVAFKGGHALHVD 286
           IVCSA  GW+NPPLRF DE CRHK+LD +GDLSL +R G+ GLPVAH+VA+K GHALH D
Sbjct: 259 IVCSAEHGWMNPPLRFDDEACRHKILDLIGDLSLVSRGGNGGLPVAHIVAYKAGHALHTD 318

Query: 287 FARRLS 292
            AR L+
Sbjct: 319 LARHLT 324

Involved in the biosynthesis of lipid A, a phosphorylated glycolipid that in bacteria anchors the lipopolysaccharide to the outer membrane of the cell. Lipid A-like molecules in plants may serve as structural components of the outer membranes of mitochondria and/or chloroplasts, or may be involved in signal transduction or plant defense responses.

Arabidopsis thaliana (taxid: 3702)

EC: 3

EC: .

EC: 5

EC: .

EC: 1

EC: .

EC: -

>sp|P0DKB8|LPXC3_ARATH Probable UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase 3 OS=Arabidopsis thaliana GN=LPXC3 PE=2 SV=1

 Score =  387 bits (994), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 190/306 (62%), Positives = 231/306 (75%), Gaps = 22/306 (7%)

Query: 7   FNAIKSSNVISWKSTGRLQQTLAGFIEKTGKTLHSGNVSTVRLCPEFAGKGRYFEFRSRL 66
           +++  SS  +S   +GRLQQTLAG +E  GK+LHSG  STV+L PE AG GR+FEFRSR 
Sbjct: 21  YSSAASSPTVSLNPSGRLQQTLAGSVEVKGKSLHSGKFSTVKLNPEIAGAGRFFEFRSRF 80

Query: 67  IPASIDFAKESPLCTTLFKDGVQIRTVEHLLSALEAKGVDNCKIEIHNMVADDQDVEAEV 126
           IPASI+FA+ESPLCTTL KD ++IRTVEHLLSALEAKGVDNC+I+I +  +DD++VE  V
Sbjct: 81  IPASIEFAQESPLCTTLLKDELKIRTVEHLLSALEAKGVDNCRIQIESESSDDREVE--V 138

Query: 127 PIFDGSASAWAEAIEQVGLK------------------RPWI--REDSFVAAFPSQKVQI 166
           PIFDGSA  W +AI+ VG+                   +P    + D+FVAAFP+ + +I
Sbjct: 139 PIFDGSAKEWVDAIQGVGINAAQNHDGESVEKMVAHVNKPVYVCKNDTFVAAFPALETRI 198

Query: 167 SYGIDFPQVPAIGCQWFSTTPLEGTCYAMHIASSRTFCIYEEVERMCNAGLIKGGSLDNA 226
           + GIDFPQVPAIGCQWFS  P+  + +A  IASSRTFC+YEEVERM  AGLIKGGSLDNA
Sbjct: 199 TCGIDFPQVPAIGCQWFSWRPIHESSFAKDIASSRTFCVYEEVERMREAGLIKGGSLDNA 258

Query: 227 IVCSASEGWLNPPLRFPDEPCRHKLLDFVGDLSLFARNGSQGLPVAHMVAFKGGHALHVD 286
           IVCSA  GW+NPPLRF DE CRHK+LD +GDLSL +R G+ GLPVAH+VA+K GHALH D
Sbjct: 259 IVCSAEHGWMNPPLRFDDEACRHKILDLIGDLSLVSRGGNGGLPVAHIVAYKAGHALHTD 318

Query: 287 FARRLS 292
            AR L+
Sbjct: 319 LARHLT 324

Involved in the biosynthesis of lipid A, a phosphorylated glycolipid that in bacteria anchors the lipopolysaccharide to the outer membrane of the cell. Lipid A-like molecules in plants may serve as structural components of the outer membranes of mitochondria and/or chloroplasts, or may be involved in signal transduction or plant defense responses.

Arabidopsis thaliana (taxid: 3702)

EC: 3

EC: .

EC: 5

EC: .

EC: 1

EC: .

EC: -

>sp|P0DKB7|LPXC2_ARATH Probable UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase 2 OS=Arabidopsis thaliana GN=LPXC2 PE=2 SV=1

 Score =  387 bits (994), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 190/306 (62%), Positives = 231/306 (75%), Gaps = 22/306 (7%)

Query: 7   FNAIKSSNVISWKSTGRLQQTLAGFIEKTGKTLHSGNVSTVRLCPEFAGKGRYFEFRSRL 66
           +++  SS  +S   +GRLQQTLAG +E  GK+LHSG  STV+L PE AG GR+FEFRSR 
Sbjct: 21  YSSAASSPTVSLNPSGRLQQTLAGSVEVKGKSLHSGKFSTVKLNPEIAGAGRFFEFRSRF 80

Query: 67  IPASIDFAKESPLCTTLFKDGVQIRTVEHLLSALEAKGVDNCKIEIHNMVADDQDVEAEV 126
           IPASI+FA+ESPLCTTL KD ++IRTVEHLLSALEAKGVDNC+I+I +  +DD++VE  V
Sbjct: 81  IPASIEFAQESPLCTTLLKDELKIRTVEHLLSALEAKGVDNCRIQIESESSDDREVE--V 138

Query: 127 PIFDGSASAWAEAIEQVGLK------------------RPWI--REDSFVAAFPSQKVQI 166
           PIFDGSA  W +AI+ VG+                   +P    + D+FVAAFP+ + +I
Sbjct: 139 PIFDGSAKEWVDAIQGVGINAAQNHDGESVEKMVAHVNKPVYVCKNDTFVAAFPALETRI 198

Query: 167 SYGIDFPQVPAIGCQWFSTTPLEGTCYAMHIASSRTFCIYEEVERMCNAGLIKGGSLDNA 226
           + GIDFPQVPAIGCQWFS  P+  + +A  IASSRTFC+YEEVERM  AGLIKGGSLDNA
Sbjct: 199 TCGIDFPQVPAIGCQWFSWRPIHESSFAKDIASSRTFCVYEEVERMREAGLIKGGSLDNA 258

Query: 227 IVCSASEGWLNPPLRFPDEPCRHKLLDFVGDLSLFARNGSQGLPVAHMVAFKGGHALHVD 286
           IVCSA  GW+NPPLRF DE CRHK+LD +GDLSL +R G+ GLPVAH+VA+K GHALH D
Sbjct: 259 IVCSAEHGWMNPPLRFDDEACRHKILDLIGDLSLVSRGGNGGLPVAHIVAYKAGHALHTD 318

Query: 287 FARRLS 292
            AR L+
Sbjct: 319 LARHLT 324

Involved in the biosynthesis of lipid A, a phosphorylated glycolipid that in bacteria anchors the lipopolysaccharide to the outer membrane of the cell. Lipid A-like molecules in plants may serve as structural components of the outer membranes of mitochondria and/or chloroplasts, or may be involved in signal transduction or plant defense responses.

Arabidopsis thaliana (taxid: 3702)

EC: 3

EC: .

EC: 5

EC: .

EC: 1

EC: .

EC: -

>sp|F4IAT8|LPXC1_ARATH Probable UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase 1 OS=Arabidopsis thaliana GN=LPXC1 PE=2 SV=2

 Score =  387 bits (994), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 190/306 (62%), Positives = 231/306 (75%), Gaps = 22/306 (7%)

Query: 7   FNAIKSSNVISWKSTGRLQQTLAGFIEKTGKTLHSGNVSTVRLCPEFAGKGRYFEFRSRL 66
           +++  SS  +S   +GRLQQTLAG +E  GK+LHSG  STV+L PE AG GR+FEFRSR 
Sbjct: 21  YSSAASSPTVSLNPSGRLQQTLAGSVEVKGKSLHSGKFSTVKLNPEIAGAGRFFEFRSRF 80

Query: 67  IPASIDFAKESPLCTTLFKDGVQIRTVEHLLSALEAKGVDNCKIEIHNMVADDQDVEAEV 126
           IPASI+FA+ESPLCTTL KD ++IRTVEHLLSALEAKGVDNC+I+I +  +DD++VE  V
Sbjct: 81  IPASIEFAQESPLCTTLLKDELKIRTVEHLLSALEAKGVDNCRIQIESESSDDREVE--V 138

Query: 127 PIFDGSASAWAEAIEQVGLK------------------RPWI--REDSFVAAFPSQKVQI 166
           PIFDGSA  W +AI+ VG+                   +P    + D+FVAAFP+ + +I
Sbjct: 139 PIFDGSAKEWVDAIQGVGINAAQNHDGESVEKMVAHVNKPVYVCKNDTFVAAFPALETRI 198

Query: 167 SYGIDFPQVPAIGCQWFSTTPLEGTCYAMHIASSRTFCIYEEVERMCNAGLIKGGSLDNA 226
           + GIDFPQVPAIGCQWFS  P+  + +A  IASSRTFC+YEEVERM  AGLIKGGSLDNA
Sbjct: 199 TCGIDFPQVPAIGCQWFSWRPIHESSFAKDIASSRTFCVYEEVERMREAGLIKGGSLDNA 258

Query: 227 IVCSASEGWLNPPLRFPDEPCRHKLLDFVGDLSLFARNGSQGLPVAHMVAFKGGHALHVD 286
           IVCSA  GW+NPPLRF DE CRHK+LD +GDLSL +R G+ GLPVAH+VA+K GHALH D
Sbjct: 259 IVCSAEHGWMNPPLRFDDEACRHKILDLIGDLSLVSRGGNGGLPVAHIVAYKAGHALHTD 318

Query: 287 FARRLS 292
            AR L+
Sbjct: 319 LARHLT 324

Involved in the biosynthesis of lipid A, a phosphorylated glycolipid that in bacteria anchors the lipopolysaccharide to the outer membrane of the cell. Lipid A-like molecules in plants may serve as structural components of the outer membranes of mitochondria and/or chloroplasts, or may be involved in signal transduction or plant defense responses.

Arabidopsis thaliana (taxid: 3702)

EC: 3

EC: .

EC: 5

EC: .

EC: 1

EC: .

EC: -

>sp|Q3MH15|LPXC_ANAVT UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase OS=Anabaena variabilis (strain ATCC 29413 / PCC 7937) GN=lpxC PE=3 SV=1

 Score =  225 bits (574), Expect = 2e-58,   Method: Compositional matrix adjust.
 Identities = 129/289 (44%), Positives = 170/289 (58%), Gaps = 38/289 (13%)

Query: 25  QQTLAGFIEKTGKTLHSGNVSTVRLCPEFAGKGRYFEF----RSRLIPASIDFAKESPLC 80
           Q TLA  I  TG  LHSG  + VR+ P  AG GRYF       S +IPA +    ++ L 
Sbjct: 3   QHTLAEAIAHTGVGLHSGVSTHVRILPADAGSGRYFVRVDLPDSPIIPAQVAAVSQTVLS 62

Query: 81  TTLFKDGVQIRTVEHLLSALEAKGVDNCKIEIHNMVADDQDVEAEVPIFDGSASAWAEAI 140
           T L K    +RTVEHLL+AL   GVDN +IEI           +EVP+ DGSA  W ++I
Sbjct: 63  TQLGKGEAGVRTVEHLLAALAGMGVDNARIEIDG---------SEVPLLDGSAQEWVKSI 113

Query: 141 EQVGL---------------KRPWI-REDSFVAAFPSQKVQISYGIDFPQVPAIGCQWFS 184
            +VGL               +  WI ++D+FVAA P+ + + SYGIDF  +PAIG QW+S
Sbjct: 114 AEVGLVTQAVTDNTVSWDIPEPIWIHQDDAFVAAIPASETRFSYGIDF-DLPAIGNQWYS 172

Query: 185 --TTPLEGTCYAMHIASSRTFCIYEEVERMCNAGLIKGGSLDNAIVCSASEGWLNPPLRF 242
              T    T +A  +A +RTF +  ++E +  +GLIKGGSLDNA+VC   +GW+NPPLRF
Sbjct: 173 WPLTTESDTSFAKEVAPARTFGLLHQIEYLQKSGLIKGGSLDNALVC-GPDGWVNPPLRF 231

Query: 243 PDEPCRHKLLDFVGDLSLFARNGSQGLPVAHMVAFKGGHALHVDFARRL 291
            +EP RHK+LD VGDLSL         P AH +A+K  H LH+  A+R+
Sbjct: 232 ANEPVRHKILDLVGDLSLLGY-----FPRAHFLAYKASHNLHIQLAQRI 275

Involved in the biosynthesis of lipid A, a phosphorylated glycolipid that anchors the lipopolysaccharide to the outer membrane of the cell.

Anabaena variabilis (strain ATCC 29413 / PCC 7937) (taxid: 240292)

EC: 3

EC: .

EC: 5

EC: .

EC: 1

EC: .

EC: -

>sp|B2IWK6|LPXC_NOSP7 UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase OS=Nostoc punctiforme (strain ATCC 29133 / PCC 73102) GN=lpxC PE=3 SV=1

 Score =  223 bits (569), Expect = 9e-58,   Method: Compositional matrix adjust.
 Identities = 133/292 (45%), Positives = 169/292 (57%), Gaps = 42/292 (14%)

Query: 25  QQTLAGFIEKTGKTLHSGNVSTVRLCPEFAGKGRYFEFRSRL-----IPASIDFAKESPL 79
           Q TLA  I + G  LHSG  + VR+ P+  G GRYF  R  L     IPA +     + L
Sbjct: 3   QHTLAAEITQVGVGLHSGVNTQVRILPDETGSGRYF-VRVDLPDLPIIPAQVAAVSHTVL 61

Query: 80  CTTLFKDGVQIRTVEHLLSALEAKGVDNCKIEIHNMVADDQDVEAEVPIFDGSASAWAEA 139
            T L K  V +RTVEHLL+AL   GVDN +IEI           +EVP+ DGSAS W   
Sbjct: 62  STQLGKGEVYVRTVEHLLAALSGMGVDNARIEIDG---------SEVPLLDGSASVWVAN 112

Query: 140 IEQVGL-KRP-------------WIRE-DSFVAAFPSQKVQISYGIDFPQVPAIGCQWFS 184
           I QVGL  +P             W+ + D+FV A P+ + + SYGI+F  +PAIG QW+S
Sbjct: 113 IAQVGLVSQPVNNQVPLTVTEPIWVYQGDAFVCALPAPETRFSYGIEF-DLPAIGNQWYS 171

Query: 185 ---TTPLE--GTCYAMHIASSRTFCIYEEVERMCNAGLIKGGSLDNAIVCSASEGWLNPP 239
              TT LE     +A  IA +RTF +  ++E +   GLIKGGSLDNA+VC   EGWLNPP
Sbjct: 172 WSLTTELEKASASFAAEIAPARTFGLLHQIEHLQKTGLIKGGSLDNALVC-GPEGWLNPP 230

Query: 240 LRFPDEPCRHKLLDFVGDLSLFARNGSQGLPVAHMVAFKGGHALHVDFARRL 291
           LRF +EP RHK+LD VGDLSL         P AH +A+K  H LH+  A+++
Sbjct: 231 LRFANEPVRHKILDLVGDLSLLG-----AFPRAHFLAYKASHNLHIQLAQKI 277

Involved in the biosynthesis of lipid A, a phosphorylated glycolipid that anchors the lipopolysaccharide to the outer membrane of the cell.

Nostoc punctiforme (strain ATCC 29133 / PCC 73102) (taxid: 63737)

EC: 3

EC: .

EC: 5

EC: .

EC: 1

EC: .

EC: -

>sp|Q8YUR5|LPXC_NOSS1 UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase OS=Nostoc sp. (strain PCC 7120 / UTEX 2576) GN=lpxC PE=3 SV=1

 Score =  222 bits (565), Expect = 3e-57,   Method: Compositional matrix adjust.
 Identities = 128/289 (44%), Positives = 167/289 (57%), Gaps = 38/289 (13%)

Query: 25  QQTLAGFIEKTGKTLHSGNVSTVRLCPEFAGKGRYFEF----RSRLIPASIDFAKESPLC 80
           Q TLA  I  TG  LHSG  + VR+ P  AG GRYF       S  IPA +    ++ L 
Sbjct: 3   QHTLAEAIAHTGVGLHSGVSTHVRILPADAGSGRYFVRVDLPDSPTIPAQVAVVSQTVLS 62

Query: 81  TTLFKDGVQIRTVEHLLSALEAKGVDNCKIEIHNMVADDQDVEAEVPIFDGSASAWAEAI 140
           T L      +RTVEHLL+AL   GVDN +IEI            E+P+ DGSA  W  +I
Sbjct: 63  TQLGGGETGVRTVEHLLAALAGMGVDNARIEIDG---------PEIPLLDGSAQEWVTSI 113

Query: 141 EQVGL--------------KRP-WI-REDSFVAAFPSQKVQISYGIDFPQVPAIGCQWFS 184
            +VGL              + P WI ++D+FVAA P+ + + SYGIDF  +PAIG QW+S
Sbjct: 114 AEVGLVAQAVTNNLASFDIQEPIWIHQDDAFVAAIPASETRFSYGIDF-DLPAIGNQWYS 172

Query: 185 --TTPLEGTCYAMHIASSRTFCIYEEVERMCNAGLIKGGSLDNAIVCSASEGWLNPPLRF 242
              T    T +A  IA +RTF +  ++E +  +GLIKGGSLDNA++C   +GW+NPPLRF
Sbjct: 173 WSLTTEPDTSFAQEIAPARTFGLLHQIEYLQKSGLIKGGSLDNALIC-GPDGWVNPPLRF 231

Query: 243 PDEPCRHKLLDFVGDLSLFARNGSQGLPVAHMVAFKGGHALHVDFARRL 291
            +EP RHK+LD VGDLSL         P AH +A+K  H LH+  A+R+
Sbjct: 232 ANEPVRHKILDLVGDLSLLGY-----FPRAHFLAYKASHNLHIQLAQRI 275

Involved in the biosynthesis of lipid A, a phosphorylated glycolipid that anchors the lipopolysaccharide to the outer membrane of the cell.

Nostoc sp. (strain PCC 7120 / UTEX 2576) (taxid: 103690)

EC: 3

EC: .

EC: 5

EC: .

EC: 1

EC: .

EC: -

>sp|Q8DI02|LPXC_THEEB UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase OS=Thermosynechococcus elongatus (strain BP-1) GN=lpxC PE=3 SV=1

 Score =  212 bits (539), Expect = 3e-54,   Method: Compositional matrix adjust.
 Identities = 124/286 (43%), Positives = 168/286 (58%), Gaps = 37/286 (12%)

Query: 25  QQTLAGFIEKTGKTLHSGNVSTVRLCPEFAGKGRYF---EFRSR-LIPASIDFAKESPLC 80
           Q+TLAG  + +G  LHSG    + L P  A  GR F   +   + +IPA I+  K + L 
Sbjct: 15  QRTLAGTAQWSGVGLHSGQWVALTLQPAAANTGRQFVRLDLEGQPVIPARIEAVKSTQLA 74

Query: 81  TTLFKDGVQIRTVEHLLSALEAKGVDNCKIEIHNMVADDQDVEAEVPIFDGSASAWAEAI 140
           T L  +G  +RTVEHLL+AL   G+DN  I+I            EVP+ DGSA  W E I
Sbjct: 75  TELVANGASVRTVEHLLAALAIAGIDNVTIQITG---------PEVPVLDGSAQPWLEGI 125

Query: 141 EQVGL-----KRPWI---------REDSFVAAFPSQKVQISYGIDFPQVPAIGCQWFSTT 186
           ++VG+      RP +           ++FV+A P+ +++++YGIDFP   AIG QW S T
Sbjct: 126 QRVGVVPQEAPRPAVILKEPVTIYEGEAFVSAIPAPELRLTYGIDFPYR-AIGRQWCSFT 184

Query: 187 PLEGTCYAMHIASSRTFCIYEEVERMCNAGLIKGGSLDNAIVCSASEGWLNPPLRFPDEP 246
           P E    A  +A +RTF   E+V+ + + GLI+GGSL+NA+VCSAS GW+NPPLRF DEP
Sbjct: 185 PSE---LATEVAPARTFGFAEQVDYLRSQGLIQGGSLENALVCSAS-GWVNPPLRFADEP 240

Query: 247 CRHKLLDFVGDLSLFARNGSQGLPVAHMVAFKGGHALHVDFARRLS 292
            RHKLLD  GDL+L         P+AH VA++  H LH   AR ++
Sbjct: 241 VRHKLLDLWGDLALLGTP-----PIAHYVAYRASHHLHTQLARAIA 281

Involved in the biosynthesis of lipid A, a phosphorylated glycolipid that anchors the lipopolysaccharide to the outer membrane of the cell.

Thermosynechococcus elongatus (strain BP-1) (taxid: 197221)

EC: 3

EC: .

EC: 5

EC: .

EC: 1

EC: .

EC: -

>sp|B7KKQ2|LPXC_CYAP7 UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase OS=Cyanothece sp. (strain PCC 7424) GN=lpxC PE=3 SV=1

 Score =  208 bits (530), Expect = 4e-53,   Method: Compositional matrix adjust.
 Identities = 115/290 (39%), Positives = 165/290 (56%), Gaps = 37/290 (12%)

Query: 26  QTLAGFIEKTGKTLHSGNVSTVRLCPEFAGKGRYFEF----RSRLIPASIDFAKESPLCT 81
            T+    E++G  LHSG  + V++ P   G+GRYF      +  +IPA + +  ++PL T
Sbjct: 4   HTIKKPFERSGVGLHSGITTQVKVLPAKPGEGRYFVRVDLPQQPIIPAKLAYVNQTPLST 63

Query: 82  TLFKDGVQIRTVEHLLSALEAKGVDNCKIEIHNMVADDQDVEAEVPIFDGSASAWAEAIE 141
            L      +RTVEHLL+AL   G+++ +IEI            EVP+ DGSA  W EAI 
Sbjct: 64  ELKSPQGSVRTVEHLLAALSGSGINDVRIEIDG---------PEVPLLDGSAQQWIEAIA 114

Query: 142 QVGLKRPWIRE----------------DSFVAAFPSQKVQISYGIDFPQVPAIGCQWFST 185
             G+      E                D+FV A P+++++ +YGIDF     IG QW+S 
Sbjct: 115 SAGMIELTDEETTPTVMISSPISVQEGDAFVLALPARELRFTYGIDF-AYSVIGNQWYSW 173

Query: 186 TPLEGTCYAMHIASSRTFCIYEEVERMCNAGLIKGGSLDNAIVCSASEGWLNPPLRFPDE 245
            P     +A  IA +RTF   +++E +  AGLIKGGSL+NA+VC   +GW+NPPLRF +E
Sbjct: 174 NP-ASESFAEAIAPARTFGFADQIESLKQAGLIKGGSLENALVCD-HQGWVNPPLRFSNE 231

Query: 246 PCRHKLLDFVGDLSLFARNGSQGLPVAHMVAFKGGHALHVDFARRLSGVM 295
           P RHKLLD VGDLSL      + +P+AH +A+K  H LH++ A+ + G +
Sbjct: 232 PVRHKLLDLVGDLSLL-----ETIPLAHFLAYKASHKLHIELAKAIHGTV 276

Involved in the biosynthesis of lipid A, a phosphorylated glycolipid that anchors the lipopolysaccharide to the outer membrane of the cell.

Cyanothece sp. (strain PCC 7424) (taxid: 65393)

EC: 3

EC: .

EC: 5

EC: .

EC: 1

EC: .

EC: -

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	295
TAIR|locus:2826052	326	LpxC3 "lipid X C3" [Arabidopsi	0.694	0.628	0.511	3.8e-53
TAIR|locus:2826102	326	LpxC1 "lipid X C1" [Arabidopsi	0.694	0.628	0.511	3.8e-53
TIGR_CMR|SPO_1205	306	SPO_1205 "UDP-3-0-acyl N-acety	0.850	0.820	0.355	1.1e-25
TIGR_CMR|GSU_0731	275	GSU_0731 "UDP-3-0-acyl N-acety	0.732	0.785	0.354	3.6e-25
TIGR_CMR|SO_4214	306	SO_4214 "UDP-3-0-acyl N-acetyl	0.854	0.823	0.313	2.6e-24
TIGR_CMR|CBU_0142	303	CBU_0142 "UDP-3-0-acyl N-acety	0.854	0.831	0.314	1.1e-23
TIGR_CMR|CPS_4457	305	CPS_4457 "UDP-3-0-acyl N-acety	0.820	0.793	0.332	2.9e-23
UNIPROTKB|P0A725	305	lpxC [Escherichia coli K-12 (t	0.820	0.793	0.325	7e-22
TIGR_CMR|CJE_0127	294	CJE_0127 "UDP-3-0-acyl N-acety	0.755	0.758	0.334	3e-21
UNIPROTKB|Q9KPH2	305	lpxC "UDP-3-O-[3-hydroxymyrist	0.840	0.813	0.324	3.9e-21

TAIR|locus:2826052 LpxC3 "lipid X C3" [Arabidopsis thaliana (taxid:3702)]

 Score = 550 (198.7 bits), Expect = 3.8e-53, P = 3.8e-53
 Identities = 108/211 (51%), Positives = 153/211 (72%)

Query:    88 VQIRTVEHLLSALEAKGVDNCKIEIHNMVADDQD-VEAEVPI-FDGSASAWAEAIEQV-- 143
             ++ + V++    +E++  D+ ++E+       ++ V+A   +  + + +   E++E++  
Sbjct:   114 LEAKGVDNCRIQIESESSDDREVEVPIFDGSAKEWVDAIQGVGINAAQNHDGESVEKMVA 173

Query:   144 GLKRP-WI-REDSFVAAFPSQKVQISYGIDFPQVPAIGCQWFSTTPLEGTCYAMHIASSR 201
              + +P ++ + D+FVAAFP+ + +I+ GIDFPQVPAIGCQWFS  P+  + +A  IASSR
Sbjct:   174 HVNKPVYVCKNDTFVAAFPALETRITCGIDFPQVPAIGCQWFSWRPIHESSFAKDIASSR 233

Query:   202 TFCIYEEVERMCNAGLIKGGSLDNAIVCSASEGWLNPPLRFPDEPCRHKLLDFVGDLSLF 261
             TFC+YEEVERM  AGLIKGGSLDNAIVCSA  GW+NPPLRF DE CRHK+LD +GDLSL 
Sbjct:   234 TFCVYEEVERMREAGLIKGGSLDNAIVCSAEHGWMNPPLRFDDEACRHKILDLIGDLSLV 293

Query:   262 ARNGSQGLPVAHMVAFKGGHALHVDFARRLS 292
             +R G+ GLPVAH+VA+K GHALH D AR L+
Sbjct:   294 SRGGNGGLPVAHIVAYKAGHALHTDLARHLT 324

GO:0005737 "cytoplasm" evidence=ISM

GO:0008759 "UDP-3-O-[3-hydroxymyristoyl

GO:0009245 "lipid A biosynthetic process" evidence=IEA;ISS

GO:0009507 "chloroplast" evidence=ISM

TAIR|locus:2826102 LpxC1 "lipid X C1" [Arabidopsis thaliana (taxid:3702)]

 Score = 550 (198.7 bits), Expect = 3.8e-53, P = 3.8e-53
 Identities = 108/211 (51%), Positives = 153/211 (72%)

Query:    88 VQIRTVEHLLSALEAKGVDNCKIEIHNMVADDQD-VEAEVPI-FDGSASAWAEAIEQV-- 143
             ++ + V++    +E++  D+ ++E+       ++ V+A   +  + + +   E++E++  
Sbjct:   114 LEAKGVDNCRIQIESESSDDREVEVPIFDGSAKEWVDAIQGVGINAAQNHDGESVEKMVA 173

Query:   144 GLKRP-WI-REDSFVAAFPSQKVQISYGIDFPQVPAIGCQWFSTTPLEGTCYAMHIASSR 201
              + +P ++ + D+FVAAFP+ + +I+ GIDFPQVPAIGCQWFS  P+  + +A  IASSR
Sbjct:   174 HVNKPVYVCKNDTFVAAFPALETRITCGIDFPQVPAIGCQWFSWRPIHESSFAKDIASSR 233

Query:   202 TFCIYEEVERMCNAGLIKGGSLDNAIVCSASEGWLNPPLRFPDEPCRHKLLDFVGDLSLF 261
             TFC+YEEVERM  AGLIKGGSLDNAIVCSA  GW+NPPLRF DE CRHK+LD +GDLSL 
Sbjct:   234 TFCVYEEVERMREAGLIKGGSLDNAIVCSAEHGWMNPPLRFDDEACRHKILDLIGDLSLV 293

Query:   262 ARNGSQGLPVAHMVAFKGGHALHVDFARRLS 292
             +R G+ GLPVAH+VA+K GHALH D AR L+
Sbjct:   294 SRGGNGGLPVAHIVAYKAGHALHTDLARHLT 324

GO:0008759 "UDP-3-O-[3-hydroxymyristoyl

GO:0009245 "lipid A biosynthetic process" evidence=IEA

GO:0009507 "chloroplast" evidence=ISM

GO:0005739 "mitochondrion" evidence=IDA

GO:2001289 "lipid X metabolic process" evidence=IMP

TIGR_CMR|SPO_1205 SPO_1205 "UDP-3-0-acyl N-acetylglucosamine deacetylase" [Ruegeria pomeroyi DSS-3 (taxid:246200)]

 Score = 291 (107.5 bits), Expect = 1.1e-25, P = 1.1e-25
 Identities = 97/273 (35%), Positives = 127/273 (46%)

Query:    24 LQQTLAGFIEKTGKTLHSGNVSTVRLCPEFAGKGRYF-----EFRSRLIPASIDFAKESP 78
             +Q TL   +   G  LH G    + L P  AG G +F     E    +IPA  D    +P
Sbjct:     1 MQHTLKTSVTFQGIGLHGGKPVRMTLRPAAAGHGIWFKRTDIEIGDAMIPAIYDLVDRTP 60

Query:    79 LCTTLFKD-GVQIRTVEHLLSALEAKGVDNCKIEIHNM---VADDQDVEAEVPIFD-GSA 133
             LCT L    GV + TVEH+++AL   GV N  IE+      + D   VE    I   G  
Sbjct:    61 LCTRLVNAAGVSVSTVEHIMAALAGCGVHNALIELDGPEVPIMDGSSVEFVRGIMARGVR 120

Query:   134 SAWAEAIEQVGLKRPWIREDSFVAAF-PSQKVQISYGIDFPQVPAIGCQWFSTTPLEGTC 192
                A  +    LK   + +D   A   PS  ++I + IDF    AIG Q        G+ 
Sbjct:   121 QQAAPVLAYEVLKAVTVEKDGARATLMPSDGLEIEFTIDFEDA-AIGRQTRRMNMRNGS- 178

Query:   193 YAMHIASSRTFCIYEEVERMCNAGLIKGGSLDNAIVCSASEGWLNPP-LRFPDEPCRHKL 251
             +A  ++ SRTFC   +VE M   GL  GG+L+NA+V    E  L P  LR  DE  RHK+
Sbjct:   179 FARELSDSRTFCRRSDVEAMRANGLALGGTLENAVVVDGDE-ILTPGGLRHTDEAVRHKM 237

Query:   252 LDFVGDLSLFARNGSQGLPVAHM-VAFKGGHAL 283
             LD +GDL +       G P+    V  K GHAL
Sbjct:   238 LDALGDLYM------AGGPILGCYVGDKAGHAL 264

GO:0008759 "UDP-3-O-[3-hydroxymyristoyl

GO:0009245 "lipid A biosynthetic process" evidence=ISS

TIGR_CMR|GSU_0731 GSU_0731 "UDP-3-0-acyl N-acetylglucosamine deacetylase" [Geobacter sulfurreducens PCA (taxid:243231)]

 Score = 286 (105.7 bits), Expect = 3.6e-25, P = 3.6e-25
 Identities = 89/251 (35%), Positives = 125/251 (49%)

Query:    25 QQTLAGFIEKTGKTLHSGNVSTVRLCP--EFAGKGRYFEFRSRLIPASIDFAKESPLCTT 82
             Q T+    + +G  LH+G   T+   P  EF   G  F ++ +LIPA  D   ++ L T 
Sbjct:     5 QTTINRIFKLSGIGLHTGREVTLEFIPRREF---GIAFVYQGQLIPARYDMVADTRLSTQ 61

Query:    83 LFKDGVQIRTVEHLLSALEAKGVDNCKIEIHNMVADDQDVEAEVPIFDGSA-----SAWA 137
             +  DG  + T+EHL++A    G+ NC + I            EVPI DGSA       W 
Sbjct:    62 IAADGKSVSTIEHLMAAFYYSGITNCLVYIDG---------PEVPIMDGSAWEFYHEIWR 112

Query:   138 EAIEQ-----VGLK--RPW--IREDSFVAAFPSQKVQISYGIDFPQVPAIGCQWFSTTPL 188
               + +     V LK  RP      D++V   P   + I+  I+F   P +G Q      +
Sbjct:   113 AGVYEFPETGVYLKVLRPVEVSHNDAWVRVKPLNTLDITMTIEFR--PPVGKQRKRLMDV 170

Query:   189 EGTCYAMHIASSRTFCIYEEVERMCNAGLIKGGSLDNAIVCSASEGWLNPP-LRFPDEPC 247
             E    A+ I +SRTF ++EE+E +  AGL KGGSLDNA+V    E  LNP  LR+  E  
Sbjct:   171 EN---AVSIINSRTFVLHEEIEAIRKAGLAKGGSLDNAVVIGGEE-ILNPNGLRYKKELV 226

Query:   248 RHKLLDFVGDL 258
              HK+LD +GDL
Sbjct:   227 NHKILDLIGDL 237

GO:0008759 "UDP-3-O-[3-hydroxymyristoyl

GO:0009245 "lipid A biosynthetic process" evidence=ISS

TIGR_CMR|SO_4214 SO_4214 "UDP-3-0-acyl N-acetylglucosamine deacetylase" [Shewanella oneidensis MR-1 (taxid:211586)]

 Score = 278 (102.9 bits), Expect = 2.6e-24, P = 2.6e-24
 Identities = 90/287 (31%), Positives = 135/287 (47%)

Query:    25 QQTLAGFIEKTGKTLHSGNVSTVRLCPEFAGKG----RYFEFRSRLIPASIDFAKESPLC 80
             Q+T+   ++ TG  LHSGN  T+ + P     G    R     +  IPA  +  +E+ +C
Sbjct:     4 QRTVQKMVKATGVGLHSGNKVTLSIMPAPVNTGIVLVRTDMSPAVAIPAKAEQVRETTMC 63

Query:    81 TTLFKD-GVQIRTVEHLLSALEAKGVDNCKIEIHNMVADDQDVEAEVPIFDGSASAWAEA 139
             T L  D G++I T+EHL +AL   G+DN  IE+        D   E+PI DGSAS +   
Sbjct:    64 TALVNDEGIRISTIEHLFAALAGLGIDNAVIEV--------DAP-EIPIMDGSASPFVFL 114

Query:   140 IEQVGLK------------RPWIREDS--FVAAFPSQKVQISYGIDFPQVPAIGCQWFST 185
             ++  G+K            RP   ED   +    P +  ++++ IDF        Q    
Sbjct:   115 LQSAGIKEQSAPKKYLKIKRPVRVEDGDKWAELKPFKGFRVNFKIDFAHPEIARSQQHVV 174

Query:   186 TPLEGTCYAMHIASSRTFCIYEEVERMCNAGLIKGGSLDNAIVCSASEGWLNPP-LRFPD 244
                  + +   I+ +RTF    ++E +    L  GGS++NA+V       LNP  LR+ D
Sbjct:   175 MDFSTSAFVKDISRARTFGFMRDIEYLRANNLALGGSMENAVVLDEYRV-LNPDGLRYED 233

Query:   245 EPCRHKLLDFVGDLSLFARNGSQGLPVAHMVAFKGGHALHVDFARRL 291
             E  +HK+LD  GDL + A +   G       A+K GHAL+    R L
Sbjct:   234 EFVKHKILDAFGDLYV-AGHAILG----EFTAYKTGHALNNQLVRAL 275

GO:0008759 "UDP-3-O-[3-hydroxymyristoyl

GO:0009245 "lipid A biosynthetic process" evidence=ISS

TIGR_CMR|CBU_0142 CBU_0142 "UDP-3-0-acyl N-acetylglucosamine deacetylase" [Coxiella burnetii RSA 493 (taxid:227377)]

 Score = 272 (100.8 bits), Expect = 1.1e-23, P = 1.1e-23
 Identities = 90/286 (31%), Positives = 130/286 (45%)

Query:    25 QQTLAGFIEKTGKTLHSGNVSTVRLCPEFAGKGRYFEFRSRL-----IPASIDFAKESPL 79
             Q+TL   +  TG  +H+G    + L P     G  F  R+ L     IPA +++  ++ L
Sbjct:     4 QRTLKNVVRATGVGVHTGEKVYLTLRPAPPNTGIIF-CRTDLDPVVQIPARVNYIGDTSL 62

Query:    80 CTTLFKDGVQIRTVEHLLSALEAKGVDNCKIEIHNMVADDQDVEAEVPIFDGSASAWAEA 139
              T L K  V+I TVEHLLSAL   GVDN  I++            E+PI DGSA  +   
Sbjct:    63 STCLTKGDVRIATVEHLLSALAGVGVDNLYIDL---------TSPELPIMDGSAGPFVFL 113

Query:   140 IEQVGLK-----RPWIR---------EDSFVAAFPSQKVQISYGIDFPQVPAIGCQWFST 185
             I+  G++     + +IR          D  V   P    +IS+GIDF           +T
Sbjct:   114 IQSAGIEEQNAPKEFIRIKQRVKIEEADKSVMVEPYNGFKISFGIDFDHPLFNEHNQNAT 173

Query:   186 TPLEGTCYAMHIASSRTFCIYEEVERMCNAGLIKGGSLDNAIVCSASEGWLNPPLRFPDE 245
                  T Y   ++ +RTF    + E +    L  G SLDNA+V    +      LR+PDE
Sbjct:   174 LDFSSTSYVKEVSRARTFGFLSDYEFIRKNNLALGASLDNALVLDEYKILNQDGLRYPDE 233

Query:   246 PCRHKLLDFVGDLSLFARNGSQGLPVAHMVAFKGGHALHVDFARRL 291
               +HK+LD +GDL L  R+      +      K GH L+    ++L
Sbjct:   234 FVKHKILDVIGDLYLLGRS-----LIGSFSGVKSGHTLNSQLLKQL 274

GO:0008759 "UDP-3-O-[3-hydroxymyristoyl

GO:0009245 "lipid A biosynthetic process" evidence=ISS

TIGR_CMR|CPS_4457 CPS_4457 "UDP-3-0-acyl N-acetylglucosamine deacetylase" [Colwellia psychrerythraea 34H (taxid:167879)]

 Score = 268 (99.4 bits), Expect = 2.9e-23, P = 2.9e-23
 Identities = 94/283 (33%), Positives = 138/283 (48%)

Query:    25 QQTLAGFIEKTGKTLHSGNVSTVRLCPEFAGKGRYFEFRSRLIP-----ASIDFAKESPL 79
             Q+TL   +   G  LH G    V L P  A  G  F  R  L P     AS +   E+ L
Sbjct:     4 QRTLKTSVSTVGVGLHKGEKVQVTLRPAPANTGIVFR-RVDLDPVVDIKASPEAVGETTL 62

Query:    80 CTTLFKDG-VQIRTVEHLLSALEAKGVDNCKIEIHNMVADDQDVEAEVPIFDGSASAWAE 138
             CT L  +  V++ TVEHLLSA+   G+DN  I++ +         AE+PI DGSA  +  
Sbjct:    63 CTCLVNEQQVKVSTVEHLLSAVAGLGIDNLIIDVDS---------AEIPIMDGSALPFVY 113

Query:   139 AIEQVGL------------KRPW-IRE-DSFVAAFPSQKVQISYGIDFPQVPAIG--CQW 182
              I+ VG+            K+P  + E D +    P +  ++++ I+F   P I   CQ 
Sbjct:   114 LIQSVGIETLNAPKRFLRIKKPIRVEEGDKWAELLPYEGFRVNFSIEFEH-PVIEKTCQT 172

Query:   183 FSTTPLEGTCYAMHIASSRTFCIYEEVERMCNAGLIKGGSLDNAIVCSASEGWLNP-PLR 241
              S        +   I+ +RTF   +++E + +  L  GGSL+NAIV   +   LN   LR
Sbjct:   173 MSMD-FSSCSFIKEISRARTFGFMKDIEFLRSHNLALGGSLENAIVLD-NYRMLNKNELR 230

Query:   242 FPDEPCRHKLLDFVGDLSLFARNGSQGLPVAHMVAFKGGHALH 284
             + DE  +HK+LD +GDL +    GS  + +  + AFK GH L+
Sbjct:   231 YDDEFVKHKILDAIGDLYM----GSASI-LGELNAFKSGHGLN 268

GO:0008759 "UDP-3-O-[3-hydroxymyristoyl

GO:0009245 "lipid A biosynthetic process" evidence=ISS

UNIPROTKB|P0A725 lpxC [Escherichia coli K-12 (taxid:83333)]

 Score = 255 (94.8 bits), Expect = 7.0e-22, P = 7.0e-22
 Identities = 92/283 (32%), Positives = 136/283 (48%)

Query:    25 QQTLAGFIEKTGKTLHSGNVSTVRLCPEFAGKGRYFEFRSRLIPASIDF------AKESP 78
             Q+TL   ++ TG  LH+G   T+ L P  A  G  +  R+ L P  +DF       +++ 
Sbjct:     4 QRTLKRIVQATGVGLHTGKKVTLTLRPAPANTGVIYR-RTDLNPP-VDFPADAKSVRDTM 61

Query:    79 LCTTLFKD-GVQIRTVEHLLSALEAKGVDNCKIEIHNMVADDQDVEAEVPIFDGSASAWA 137
             LCT L  +  V+I TVEHL +AL   G+DN  IE++           E+PI DGSA+ + 
Sbjct:    62 LCTCLVNEHDVRISTVEHLNAALAGLGIDNIVIEVN---------APEIPIMDGSAAPFV 112

Query:   138 ----EA-IEQVGLKRPWIR-------EDSFV-AAF-PSQKVQISYGIDFPQVPAIGC--Q 181
                 +A I+++   + ++R       ED    A F P     + + IDF   PAI    Q
Sbjct:   113 YLLLDAGIDELNCAKKFVRIKETVRVEDGDKWAEFKPYNGFSLDFTIDFNH-PAIDSSNQ 171

Query:   182 WFSTTPLEGTCYAMHIASSRTFCIYEEVERMCNAGLIKGGSLDNAIVCSASEGWLNPPLR 241
              ++        +   I+ +RTF    ++E + + GL  GGS D AIV           LR
Sbjct:   172 RYAMN-FSADAFMRQISRARTFGFMRDIEYLQSRGLCLGGSFDCAIVVDDYRVLNEDGLR 230

Query:   242 FPDEPCRHKLLDFVGDLSLFARNGSQGLPVAHMVAFKGGHALH 284
             F DE  RHK+LD +GDL +   N      +    A+K GHAL+
Sbjct:   231 FEDEFVRHKMLDAIGDLFMCGHN-----IIGAFTAYKSGHALN 268

GO:0009245 "lipid A biosynthetic process" evidence=IEA;IMP

GO:0019213 "deacetylase activity" evidence=IDA

GO:0008759 "UDP-3-O-[3-hydroxymyristoyl

TIGR_CMR|CJE_0127 CJE_0127 "UDP-3-0-acyl N-acetylglucosamine deacetylase" [Campylobacter jejuni RM1221 (taxid:195099)]

 Score = 249 (92.7 bits), Expect = 3.0e-21, P = 3.0e-21
 Identities = 85/254 (33%), Positives = 131/254 (51%)

Query:    25 QQTLAGFIEKTGKTLHSGNVSTVRLCPEFAGKGRYFEFRSRL---IPASIDFAKESPLCT 81
             Q TLA  ++  G  LH G    + L P  A  G  F FRS L     AS +    + + T
Sbjct:     3 QLTLAKTVKGVGIGLHKGEPIEITLEPLEANSGIVF-FRSDLNASYKASPENVINTQMAT 61

Query:    82 TLFKDGVQIRTVEHLLSALEAKGVDNCKIEIHNMVADDQDVEAEVPIFDGSASAWAEAIE 141
              L  +   I T+EHL+SA+ A G+DN +I ++   A+      E P+ DGS+ ++   ++
Sbjct:    62 VLGDERGFISTIEHLMSAINAYGIDNVRIVLN---AN------EAPVMDGSSISFCMMLD 112

Query:   142 QVG------------LKRPW-IRE-DSFVAAFPSQKVQISYGIDFPQVPAIGCQWFSTTP 187
             + G            +K+P  +R+ + FV   P+++ +I+Y I F     IG Q ++   
Sbjct:   113 EAGVKELDVPKKIMVIKKPIEVRDGNKFVRLTPTKEPRINYTIKFDNA-VIGEQSYNFE- 170

Query:   188 LEGTCYAMHIASSRTFCIYEEVERMCNAGLIKGGSLDNAIVCSASEGWLNPP-LRFPDEP 246
                  Y  +IA +RTF   ++V+ + +  L  GGSL+N IV   +   LNP  LRF DE 
Sbjct:   171 FSKKNYIENIARARTFGFLKDVQALRSMNLALGGSLENTIVVDENR-ILNPEGLRFKDEF 229

Query:   247 CRHKLLDFVGDLSL 260
              RHK+LD +GDL+L
Sbjct:   230 VRHKILDAIGDLTL 243

GO:0008759 "UDP-3-O-[3-hydroxymyristoyl

GO:0009245 "lipid A biosynthetic process" evidence=ISS

UNIPROTKB|Q9KPH2 lpxC "UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase" [Vibrio cholerae O1 biovar El Tor str. N16961 (taxid:243277)]

 Score = 248 (92.4 bits), Expect = 3.9e-21, P = 3.9e-21
 Identities = 93/287 (32%), Positives = 132/287 (45%)

Query:    25 QQTLAGFIEKTGKTLHSGNVSTVRLCPEFAGKGRYFEFRSRLIPASIDF------AKESP 78
             Q+TL   ++ TG  LHSG   T+ L P  A  G  +  R+ + P  +DF       +++ 
Sbjct:     4 QRTLKEIVKTTGVGLHSGRKVTLTLRPAAANTGIIYR-RTDVNPP-VDFPADPASVRDTM 61

Query:    79 LCTTLFKD-GVQIRTVEHLLSALEAKGVDNCKIEIHNMVADDQDVEAEVPIFDGSASAWA 137
             LCT L  D GV+I TVEHL +AL   G+DN  IE+        D   E+PI DGSAS + 
Sbjct:    62 LCTALVNDQGVRISTVEHLNAALAGMGIDNAIIEV--------DAP-EIPIMDGSASPFV 112

Query:   138 EAIEQVGL------------KRPWIREDSFV-AAF-PSQKVQISYGIDFPQVPAI-GCQW 182
               ++Q G+            K+P   ED    A F P    ++ + I+F   PAI G   
Sbjct:   113 YLLQQAGIQTLNAPKRFIRIKKPVRIEDGDKWAEFVPFNGFRMDFEIEFNH-PAIDGDDQ 171

Query:   183 FSTTPLEGTCYAMHIASSRTFCIYEEVERMCNAGLIKGGSLDNAIVCSASEGWLNPPLRF 242
                       +   I+ +RTF    ++E + +  L  GGS D AIV           LRF
Sbjct:   172 RLVFDFSSQGFVKEISRARTFGFMRDIEYLQSQNLCLGGSFDCAIVLDDYRILNEEGLRF 231

Query:   243 PDEPCRHKLLDFVGDLSLFARNGSQGLPVAHMVAFKGGHALHVDFAR 289
              +E   HK+LD +GDL +        + V    A+K GH L+    R
Sbjct:   232 DNEFVTHKVLDAIGDLYM----AGHAI-VGEFRAYKSGHGLNNQLLR 273

GO:0008759 "UDP-3-O-[3-hydroxymyristoyl

GO:0009245 "lipid A biosynthetic process" evidence=ISS

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
B9L6E8	LPXC_NAUPA	3, ., 5, ., 1, ., -	0.3465	0.8203	0.8287	yes	no
B0B9Y6	LPXC_CHLTB	3, ., 5, ., 1, ., -	0.3368	0.8610	0.8881	yes	no
Q3MH15	LPXC_ANAVT	3, ., 5, ., 1, ., -	0.4463	0.8508	0.8964	yes	no
A7H914	LPXC_ANADF	3, ., 5, ., 1, ., -	0.3566	0.8406	0.8157	yes	no
A1U3F2	LPXC_MARAV	3, ., 5, ., 1, ., -	0.3286	0.8542	0.8289	yes	no
B0S9V0	LPXC_LEPBA	3, ., 5, ., 1, ., -	0.3356	0.8338	0.8145	yes	no
Q0K6N1	LPXC_CUPNH	3, ., 5, ., 1, ., -	0.3460	0.8440	0.8163	yes	no
Q824Q4	LPXC_CHLCV	3, ., 5, ., 1, ., -	0.3413	0.8745	0.9214	yes	no
Q252U8	LPXC_CHLFF	3, ., 5, ., 1, ., -	0.3554	0.8576	0.9035	yes	no
Q9Z7Q2	LPXC_CHLPN	3, ., 5, ., 1, ., -	0.3564	0.8576	0.8971	yes	no
A3QIL6	LPXC_SHELP	3, ., 5, ., 1, ., -	0.3217	0.8542	0.8235	yes	no
B3R6V2	LPXC_CUPTR	3, ., 5, ., 1, ., -	0.3564	0.8440	0.8163	yes	no
B0SS82	LPXC_LEPBP	3, ., 5, ., 1, ., -	0.3356	0.8338	0.8145	yes	no
Q0BIJ4	LPXC_BURCM	3, ., 5, ., 1, ., -	0.3333	0.8372	0.8098	yes	no
Q4QLF2	LPXC_HAEI8	3, ., 5, ., 1, ., -	0.3426	0.8440	0.8163	yes	no
B0B8A7	LPXC_CHLT2	3, ., 5, ., 1, ., -	0.3368	0.8610	0.8881	yes	no
Q5L725	LPXC_CHLAB	3, ., 5, ., 1, ., -	0.3436	0.8711	0.9178	yes	no
A6VQM7	LPXC_ACTSZ	3, ., 5, ., 1, ., -	0.3425	0.8474	0.8196	yes	no
Q8DI02	LPXC_THEEB	3, ., 5, ., 1, ., -	0.4335	0.8440	0.8736	yes	no
Q21MG3	LPXC_SACD2	3, ., 5, ., 1, ., -	0.3405	0.8305	0.8085	yes	no
B7KKQ2	LPXC_CYAP7	3, ., 5, ., 1, ., -	0.3965	0.8576	0.8634	yes	no
A5GA17	LPXC_GEOUR	3, ., 5, ., 1, ., -	0.3449	0.8508	0.8175	yes	no
B5YKK1	LPXC_THEYD	3, ., 5, ., 1, ., -	0.3438	0.8474	0.8561	yes	no
Q30X16	LPXC_DESDG	3, ., 5, ., 1, ., -	0.3517	0.8406	0.8131	yes	no
C5BP28	LPXC_TERTT	3, ., 5, ., 1, ., -	0.3321	0.8542	0.8316	yes	no
O84538	LPXC_CHLTR	3, ., 5, ., 1, ., -	0.3368	0.8610	0.8881	yes	no
A8EWD3	LPXC_ARCB4	3, ., 5, ., 1, ., -	0.3344	0.8406	0.8239	yes	no
Q8YUR5	LPXC_NOSS1	3, ., 5, ., 1, ., -	0.4429	0.8508	0.8964	yes	no
Q46X01	LPXC_CUPPJ	3, ., 5, ., 1, ., -	0.3460	0.8440	0.8163	yes	no
Q1LIN3	LPXC_RALME	3, ., 5, ., 1, ., -	0.3391	0.8440	0.8163	yes	no
A8FQA5	LPXC_SHESH	3, ., 5, ., 1, ., -	0.3148	0.8542	0.8235	yes	no
B2IWK6	LPXC_NOSP7	3, ., 5, ., 1, ., -	0.4554	0.8474	0.8561	yes	no
Q3KLG4	LPXC_CHLTA	3, ., 5, ., 1, ., -	0.3368	0.8610	0.8881	yes	no
Q2IPK1	LPXC_ANADE	3, ., 5, ., 1, ., -	0.3566	0.8406	0.8051	yes	no
Q2S9Z8	LPXC_HAHCH	3, ., 5, ., 1, ., -	0.3251	0.8542	0.8344	yes	no
Q9PJK9	LPXC_CHLMU	3, ., 5, ., 1, ., -	0.3333	0.8610	0.8881	yes	no
Q029X9	LPXC_SOLUE	3, ., 5, ., 1, ., -	0.3413	0.8542	0.8542	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
3rd Layer	3.5.1	0.691

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input:
	AT1G25210	UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase; UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase; FUNCTIONS IN- UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase activity; INVOLVED IN- lipid A biosynthetic process; CONTAINS InterPro DOMAIN/s- UDP-3-O-acyl N-acetylglucosamine deacetylase, N-terminal (InterPro-IPR015870), UDP-3-O-acyl N-acetylglucosamine deacetylase (InterPro-IPR004463), UDP-3-O-acyl N-acetylglucosamine deacetylase, C-terminal (InterPro-IPR011334); BEST Arabidopsis thaliana protein match is- UDP-3-O-[3-hydroxymyristoyl] N-acetylglucos [...] (326 aa)
		(Arabidopsis thaliana)
Predicted Functional Partners:
	AT4G29540	bacterial transferase hexapeptide repeat-containing protein; bacterial transferase hexapeptide [...] (336 aa)	•		•			•	•		0.996
	AT2G04560	transferase, transferring glycosyl groups; transferase, transferring glycosyl groups; FUNCTIONS [...] (455 aa)	•		•				•		0.988
	AT4G05210	bacterial transferase hexapeptide repeat-containing protein; bacterial transferase hexapeptide [...] (299 aa)	•		•			•	•		0.985
	AT4G21220	bacterial transferase hexapeptide repeat-containing protein; bacterial transferase hexapeptide [...] (304 aa)	•		•			•	•		0.981
	AT3G20480	tetraacyldisaccharide 4'-kinase family protein; tetraacyldisaccharide 4'-kinase family protein; [...] (395 aa)	•		•				•		0.974
	AT5G03770	3-deoxy-D-manno-octulosonic acid transferase-related; 3-deoxy-D-manno-octulosonic acid transfer [...] (447 aa)	•		•				•		0.967
	AT5G16480	tyrosine specific protein phosphatase family protein; tyrosine specific protein phosphatase fam [...] (204 aa)							•		0.873
	SDG40	SDG40 (SET DOMAIN GROUP 40); SET DOMAIN GROUP 40 (SDG40); FUNCTIONS IN- molecular_function unkn [...] (491 aa)							•		0.827
	AT3G27200	plastocyanin-like domain-containing protein; plastocyanin-like domain-containing protein; FUNCT [...] (174 aa)							•		0.823
	AT2G22230	beta-hydroxyacyl-ACP dehydratase, putative; beta-hydroxyacyl-ACP dehydratase, putative; FUNCTIO [...] (220 aa)	•	•					•		0.757

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	295
PRK13186	295	PRK13186, lpxC, UDP-3-O-[3-hydroxymyristoyl] N-ace	2e-96
COG0774	300	COG0774, LpxC, UDP-3-O-acyl-N-acetylglucosamine de	2e-83
pfam03331	277	pfam03331, LpxC, UDP-3-O-acyl N-acetylglycosamine	6e-83
TIGR00325	296	TIGR00325, lpxC, UDP-3-0-acyl N-acetylglucosamine	8e-74
PRK13188	464	PRK13188, PRK13188, bifunctional UDP-3-O-[3-hydrox	6e-62
PRK13187	304	PRK13187, PRK13187, UDP-3-O-[3-hydroxymyristoyl] N	8e-26

>gnl|CDD|237294 PRK13186, lpxC, UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase; Reviewed

 Score =  285 bits (732), Expect = 2e-96
 Identities = 105/286 (36%), Positives = 141/286 (49%), Gaps = 36/286 (12%)

Query: 25  QQTLAGFIEKTGKTLHSGNVSTVRLCPEFAGKGRYFEF----RSRLIPASIDFAKESPLC 80
           Q+TL   +  TG  LHSG   T+ L P  A  G  F          IPA  +   ++ LC
Sbjct: 4   QRTLKKPVTATGVGLHSGKKVTLTLRPAPANTGIVFRRTDLPPPVEIPARAENVGDTRLC 63

Query: 81  TTLFKDGVQIRTVEHLLSALEAKGVDNCKIEIHNMVADDQDVEAEVPIFDGSASAWAEAI 140
           TTL   GV++ TVEHL++AL   G+DN  IE+            EVPI DGSA+ +   I
Sbjct: 64  TTLGNGGVRVSTVEHLMAALAGLGIDNALIEVDG---------PEVPIMDGSAAPFVFLI 114

Query: 141 EQVGLK-----RPWIR---------EDSFVAAFPSQKVQISYGIDFPQVPAIGCQWFSTT 186
           +  G+      + +IR          D +    P    ++ + IDF   PAIG Q +S  
Sbjct: 115 QSAGIVEQNAPKKFIRIKKPVRVEDGDKWAELLPYDGFRLDFTIDFDH-PAIGRQSYSLD 173

Query: 187 PLEGTCYAMHIASSRTFCIYEEVERMCNAGLIKGGSLDNAIVCSASEGWLNPP-LRFPDE 245
               + +   IA +RTF   ++VE + +AGL  GGSLDNAIV    +  LNP  LRF DE
Sbjct: 174 FSPES-FVREIARARTFGFMKDVEYLRSAGLALGGSLDNAIVLD-DDRVLNPEGLRFEDE 231

Query: 246 PCRHKLLDFVGDLSLFARNGSQGLPVAHMVAFKGGHALHVDFARRL 291
             RHK+LD +GDL L          + H  A+K GHAL+    R L
Sbjct: 232 FVRHKILDAIGDLYLLGHP-----IIGHFTAYKSGHALNNKLLRAL 272

Length = 295

>gnl|CDD|223845 COG0774, LpxC, UDP-3-O-acyl-N-acetylglucosamine deacetylase [Cell envelope biogenesis, outer membrane]

 Score =  252 bits (647), Expect = 2e-83
 Identities = 105/291 (36%), Positives = 144/291 (49%), Gaps = 39/291 (13%)

Query: 23  RLQQTLAGFIEKTGKTLHSGNVSTVRLCPEFAGKGRYFEFRSRL-----IPASIDFAKES 77
             Q+TL   +  TG  LHSG   T+ L P  A  G  F  R+ L     IPA  +  +++
Sbjct: 2   MKQRTLKRIVSLTGVGLHSGKKVTLTLRPAPANTGIVF-RRTDLNPPVEIPADAENVRDT 60

Query: 78  PLCTTL-FKDGVQIRTVEHLLSALEAKGVDNCKIEIHNMVADDQDVEAEVPIFDGSASAW 136
            L TTL    GV+I TVEHL++AL   G+DN  IE+            E+PI DGSA+ +
Sbjct: 61  MLSTTLGNDHGVRISTVEHLMAALAGLGIDNLIIEVDG---------PEIPIMDGSAAPF 111

Query: 137 AEAIEQVG------------LKRP-WIRE-DSFVAAFPSQKVQISYGIDFPQVPAIGCQW 182
            E I++ G            +K+P  + + D +    P    ++SY IDF   PAIG QW
Sbjct: 112 VELIDEAGIKEQNAKKKFIRIKKPVRVEDGDKWAEFTPYDGFRLSYTIDFDH-PAIGRQW 170

Query: 183 FSTTP-LEGTCYAMHIASSRTFCIYEEVERMCNAGLIKGGSLDNAIVCSASEGWLNPP-L 240
            S         +   IA +RTF    +VE + + GL  GGSL+NAIV    +  LNP  L
Sbjct: 171 QSFEFDFSAESFRKEIARARTFGFMRDVEYLRSKGLALGGSLENAIVID-DDRVLNPEGL 229

Query: 241 RFPDEPCRHKLLDFVGDLSLFARNGSQGLPVAHMVAFKGGHALHVDFARRL 291
           RF DE  RHK+LD +GDL L          +    A+K GHAL+    + +
Sbjct: 230 RFEDEFVRHKILDAIGDLYLLGHP-----IIGAFTAYKSGHALNNALLKAI 275

Length = 300

>gnl|CDD|202596 pfam03331, LpxC, UDP-3-O-acyl N-acetylglycosamine deacetylase

 Score =  250 bits (641), Expect = 6e-83
 Identities = 111/287 (38%), Positives = 151/287 (52%), Gaps = 37/287 (12%)

Query: 25  QQTLAGFIEKTGKTLHSGNVSTVRLCPEFAGKGRYFEFRSRL-----IPASIDFAKESPL 79
           Q+TL   +  +G  LH+G  ST+ L P     G  F  R+ L     IPA  +  +++ L
Sbjct: 3   QRTLKRPVSVSGVGLHTGKKSTLTLEPAKENTGIVF-QRTDLSPYPIIPARPENVRDTML 61

Query: 80  CTTLFKDGVQIRTVEHLLSALEAKGVDNCKIEIHNMVADDQDVEAEVPIFDGSASAWAEA 139
            TTL  DG +I TVEHLL+AL   G+DN  IE+            E+PI DGSA  + E 
Sbjct: 62  STTLGNDGARISTVEHLLAALAGLGIDNLIIEVDG---------PEIPIMDGSALPFVEL 112

Query: 140 IEQVGL------------KRPWI--REDSFVAAFPSQKVQISYGIDFPQVPAIGCQWFST 185
           I+Q G+            K P      D F+AAFPS  ++ISY IDF        QW+S 
Sbjct: 113 IDQAGIKEQEAAKKIIRIKEPVYVQDGDKFLAAFPSDGLKISYTIDFKHPAIGKSQWYSF 172

Query: 186 TPLEGTCYAMHIASSRTFCIYEEVERMCNAGLIKGGSLDNAIVCSASEGWLNPP-LRFPD 244
              +   +   IA +RTF    E+E + + GLIKGGSL+NAIV    +  LNPP LRF D
Sbjct: 173 VFSQ-ESFRKEIAPARTFGFMREIEYLRSKGLIKGGSLENAIVFD-DDKVLNPPGLRFED 230

Query: 245 EPCRHKLLDFVGDLSLFARNGSQGLPVAHMVAFKGGHALHVDFARRL 291
           EP RHK+LD +GDL L          + H +A+K GH+L+    +++
Sbjct: 231 EPVRHKILDLIGDLYLLGVP-----VIGHFIAYKSGHSLNNQLVQKI 272

The enzymes in this family catalyze the second step in the biosynthetic pathway for lipid A. Length = 277

>gnl|CDD|188041 TIGR00325, lpxC, UDP-3-0-acyl N-acetylglucosamine deacetylase

 Score =  228 bits (582), Expect = 8e-74
 Identities = 98/287 (34%), Positives = 138/287 (48%), Gaps = 38/287 (13%)

Query: 25  QQTLAGFIEKTGKTLHSGNVSTVRLCPEFAGKGRYFEFRSRL-----IPASIDFAKESPL 79
           Q+T+   ++ TG  LHSG   T+ L P  A  G  F +R+ L      PA     +++ L
Sbjct: 3   QRTIKRSVQVTGVGLHSGVKVTLTLRPAPANTGVVF-YRTDLNPPVDFPADPKSVRDTML 61

Query: 80  CTTLFKDGVQIRTVEHLLSALEAKGVDNCKIEIHNMVADDQDVEAEVPIFDGSASAWAEA 139
           CT L  +G +I TVEHLL+AL A G+DN  IE++           E+PI DGSA  +   
Sbjct: 62  CTCLGNEGARISTVEHLLAALAALGIDNLVIEVNA---------PEIPIMDGSALPFVYL 112

Query: 140 IEQVGLK-----RPWIR---------EDSFVAAFPSQKVQISYGIDFPQVPAIGCQWFST 185
           +   G+      + +IR          D FV   P     + + IDF   PAIG Q ++ 
Sbjct: 113 LLDAGIDELNAAKKFIRIKQTVRVEDGDKFVEFKPYNGFSLDFTIDFNH-PAIGKQRYAM 171

Query: 186 TPLEGTCYAMHIASSRTFCIYEEVERMCNAGLIKGGSLDNAIVCSASEGWLNPP-LRFPD 244
                  +   IA +RTF    ++E + + GL KGGSLDNAIV       LN   LRF D
Sbjct: 172 NF-SADAFMRQIARARTFGFMRDIEYLRSRGLCKGGSLDNAIVLD-DYRILNEDGLRFED 229

Query: 245 EPCRHKLLDFVGDLSLFARNGSQGLPVAHMVAFKGGHALHVDFARRL 291
           E  RHK+LD +GDL +   N      +    A+K  H L+    + +
Sbjct: 230 EFVRHKMLDAIGDLFMLGHN-----IIGAFTAYKSSHKLNNKLLQAI 271

UDP-3-O-(R-3-hydroxymyristoyl)-GlcNAc deacetylase from E. coli , LpxC, was previously designated EnvA. This enzyme is involved in lipid-A precursor biosynthesis. It is essential for cell viability [Cell envelope, Biosynthesis and degradation of surface polysaccharides and lipopolysaccharides]. Length = 296

>gnl|CDD|237296 PRK13188, PRK13188, bifunctional UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase/(3R)-hydroxymyristoyl-[acyl-carrier-protein] dehydratase; Reviewed

 Score =  202 bits (516), Expect = 6e-62
 Identities = 107/314 (34%), Positives = 151/314 (48%), Gaps = 65/314 (20%)

Query: 25  QQTLAGFIEKTGKTLHSGNVSTVRLCPEFAGKGRYFEFRSRL-----IPASIDFAKESPL 79
           Q+T+   +   G  LH+G   T+   P     G  F+ R+ L     I A +D   ++  
Sbjct: 5   QRTIKKEVSLQGVGLHTGKEVTITFKPAPENHGYKFK-RTDLEGQPIIDADVDNVVDTER 63

Query: 80  CTTLFKDGVQIRTVEHLLSALEAKGVDNCKIEIHNMVADDQDVEAEVPIFDGSASAWAEA 139
            TTL K+GV++ TVEH+L+AL   G+DNC IE+            E PI DGS+  + EA
Sbjct: 64  GTTLEKNGVKVHTVEHVLAALYGLGIDNCLIELDGP---------EPPIMDGSSKPFVEA 114

Query: 140 IEQVGLK-----RPW--IRE---------DSFVAAFPSQKVQISYGIDFPQVPAIGCQWF 183
           IE+ G+      R +  I+E          S + A P    +I+  +DF     +G Q  
Sbjct: 115 IEEAGIVEQDAPRNYYVIKETIEYHDEETGSEIIALPLDDFRITVMVDFD-SKVLGSQHA 173

Query: 184 STTPLEGTCYAMHIASSRTFCIYEEVERMCNAGLIKGGSLDNAIV--------------- 228
           +   L    +   IA +RTF    EVE +   GLIKGG LDNAIV               
Sbjct: 174 TLFDLSE--FKKEIAPARTFVFLHEVEALLEQGLIKGGDLDNAIVIVDKEMSQEELDKLA 231

Query: 229 --------CSASEGWL-NPPLRFPDEPCRHKLLDFVGDLSLFARNGSQGLPV-AHMVAFK 278
                        G L N PLRFP+EP RHKLLD +GDL+L       G P+   ++A +
Sbjct: 232 KKFGKDHISVKENGILNNRPLRFPNEPARHKLLDVIGDLALI------GKPIKGRIIAAR 285

Query: 279 GGHALHVDFARRLS 292
            GHA++V+FA++L 
Sbjct: 286 PGHAINVEFAKKLK 299

Length = 464

>gnl|CDD|237295 PRK13187, PRK13187, UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase; Reviewed

 Score =  103 bits (258), Expect = 8e-26
 Identities = 85/295 (28%), Positives = 124/295 (42%), Gaps = 53/295 (17%)

Query: 23  RLQQTLAGFIEKTGKTLHSGNVSTVRLCPEFAGKG-RYFEFRSRL-------IPASIDFA 74
             Q TLA  +   G  LH+G    VR+ P     G     FR          +P      
Sbjct: 9   TSQGTLARPLTIDGHGLHTGRRVGVRILPARPEDGVTGIVFRRVEQGRTLATLPVDPALR 68

Query: 75  KESPLCTTLFK-DGVQIRTVEHLLSALEAKGVDNCKIEIHNMVADDQDVEAEVPIFDGSA 133
           +  PLCT L   DGV +RTVEHLL++L A  +D+  +E+        D E EVPI DGSA
Sbjct: 69  RAQPLCTMLRNADGVGVRTVEHLLASLLACEIDHAIVEL--------DAE-EVPILDGSA 119

Query: 134 SAWAEAIEQVG------------LKRPWIREDSFVAAF------PSQKVQISYGIDFPQV 175
           + W +AI   G            + R  +  D            P+ + ++S   D    
Sbjct: 120 TPWVDAIRACGRVALDAPKRFIRVLRTVVVTDGEGEQRREMRIEPAPRYELSVRNDLRGF 179

Query: 176 PAIGCQWFST-TPLEGTCYAMHIASSRTFCIYEEVERMCNAGLIKGGSLDNAI--VCSAS 232
             +   W    TP     +A  IA SR++   +       AG ++G  +       C+AS
Sbjct: 180 GEM--HWDGALTP---AAFATEIAPSRSYGRVKWAVPAILAGYLRGVPILRGARPSCTAS 234

Query: 233 --EGWLNPPLRFPDEPCRHKLLDFVGDLSLFARNGSQGLPV-AHMVAFKGGHALH 284
                +   +R PDE  RH++LD VGDL+L       G P+ A + A +  H ++
Sbjct: 235 IVGKRVLGGMRLPDEFVRHRVLDLVGDLAL------AGAPLLARVSALRPSHEMN 283

Length = 304

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	295
TIGR00325	297	lpxC UDP-3-0-acyl N-acetylglucosamine deacetylase.	100.0
PRK13186	295	lpxC UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosam	100.0
PF03331	277	LpxC: UDP-3-O-acyl N-acetylglycosamine deacetylase	100.0
COG0774	300	LpxC UDP-3-O-acyl-N-acetylglucosamine deacetylase	100.0
PRK13187	304	UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine d	100.0
PRK13188	464	bifunctional UDP-3-O-[3-hydroxymyristoyl] N-acetyl	100.0
cd01434	116	EFG_mtEFG1_IV EFG_mtEFG1_IV: domains similar to do	83.59

>TIGR00325 lpxC UDP-3-0-acyl N-acetylglucosamine deacetylase

Probab=100.00  E-value=4.7e-100  Score=716.42  Aligned_cols=254  Identities=40%  Similarity=0.633  Sum_probs=239.7

Q ss_pred             ccccccceeEEEEEEeecCCeEEEEEeecCCCCeEEEEc---c-CceeecccccccccceeeeeecCCeEEEeHHHHHHH
Q 042138           24 LQQTLAGFIEKTGKTLHSGNVSTVRLCPEFAGKGRYFEF---R-SRLIPASIDFAKESPLCTTLFKDGVQIRTVEHLLSA   99 (295)
Q Consensus        24 ~Q~Tl~~~v~~~GiGLHsG~~v~v~l~PA~~~tGi~F~~---~-~~~Ipa~~~~v~~t~~~T~L~~~~~~V~TVEHLlAA   99 (295)
                      +|+||+++|+|+|+|||||++|+|||+|||+|+||+|.+   + .+.|||.+++|.+|.+||+|++++++|+||||||||
T Consensus         2 ~Q~Tl~~~v~~~GiGLHsG~~v~ltl~PA~~~tGI~F~R~Dl~~~~~ipa~~~~v~~t~l~T~L~~~g~~V~TVEHLmAA   81 (297)
T TIGR00325         2 KQRTIKASVTVTGVGLHSGVKVTLTLRPAAANTGVVFYRTDLNPKVIFPADPTSVRDTMLCTELGNEGARISTVEHLLAA   81 (297)
T ss_pred             CccccCceEEEEEEEccCCCEEEEEEEcCCCCCcEEEEEecCCCCceEEecHHHcccccceeEEecCCeEEEeHHHHHHH
Confidence            599999999999999999999999999999999999954   2 367999999999999999999989999999999999


Q ss_pred             HhhCCCceEEEEEeecccCCCCCCCCcccccCChHHHHHHHHHcCce------------eeEE--eCCeEEEEeeCCCeE
Q 042138          100 LEAKGVDNCKIEIHNMVADDQDVEAEVPIFDGSASAWAEAIEQVGLK------------RPWI--REDSFVAAFPSQKVQ  165 (295)
Q Consensus       100 L~glgIDN~~Iei~~~~~~~~~~g~EvPIlDGSA~~f~~~i~~aGi~------------~~~~--~~~~~i~~~P~~~l~  165 (295)
                      |+|||||||+|||         +|+|+|||||||.||+++|++||++            +|+.  ++++|+.++|+++|+
T Consensus        82 L~glgIDN~~Iei---------dg~EvPIlDGSa~~fv~~i~~aGi~~q~~~r~~~~i~~pv~v~~~~~~i~~~P~~~~~  152 (297)
T TIGR00325        82 LAALGIDNLRIEV---------NAPEIPIMDGSALPFLYLLLDAGIRELNAAKKFIRIKQPVRVEDGDKFVEFKPYNGFR  152 (297)
T ss_pred             HHhCCCceEEEEe---------CCCCCCccCCchHHHHHHHHhcCCeecCCccceEEECceEEEEECCEEEEEEcCCCcE
Confidence            9999999999999         4999999999999999999999997            2221  889999999999999


Q ss_pred             EEEEEeCCCCCCcceeeeeeccCChhhHHHhccCCCccccHHHHHHHHHcCcccccCCcceEEecCCCcccCC-CCCCCC
Q 042138          166 ISYGIDFPQVPAIGCQWFSTTPLEGTCYAMHIASSRTFCIYEEVERMCNAGLIKGGSLDNAIVCSASEGWLNP-PLRFPD  244 (295)
Q Consensus       166 it~~Idf~~~~~Ig~Q~~~~~~~~~~~f~~eIA~ARTFgf~~eve~L~~~GLa~GgSldNaiVi~~~~g~lN~-~LRf~d  244 (295)
                      |+|+|||+ +|+||+|+++ +++++++|.+|||+||||||++|+|+|+++||++|||||||||++ +++|+|+ +|||+|
T Consensus       153 i~~~Idf~-~~~ig~Q~~~-~~~~~~~f~~eIA~ARTFgf~~eve~L~~~GLa~GgSL~NAiVi~-~~~vlN~~gLRf~d  229 (297)
T TIGR00325       153 LDFTIDFN-HPAIGKQWYT-MNFSAEAFATQIARARTFGFMDDIEYLRSAGLIKGGSLDNAIVLD-DYRILNEDGLRFED  229 (297)
T ss_pred             EEEEEECC-CCcccceEEE-EeCCHHHHHHHhcCCceEEcHHHHHHHHHCCccccccccceEEEC-CCcccCCCCCcCCC
Confidence            99999998 7999999999 788999999999999999999999999999999999999999997 5899998 699999


Q ss_pred             CcchhhhhhhHhhhhcccccCCCCcceEEEEEEecChHHHHHHHHHHhhc
Q 042138          245 EPCRHKLLDFVGDLSLFARNGSQGLPVAHMVAFKGGHALHVDFARRLSGV  294 (295)
Q Consensus       245 E~vRHKiLDlIGDL~Llg~~~~~G~~~G~i~a~k~GH~ln~~l~~~L~~~  294 (295)
                      |||||||||+||||||+|+|     ++|||+|||+||++|++|+|+|+++
T Consensus       230 E~VRHKiLDlIGDL~L~G~p-----i~g~~~a~k~GH~ln~~l~~~l~~~  274 (297)
T TIGR00325       230 EFVRHKMLDAIGDLSMLGKN-----IIGHFTAYKSSHKLNNKLLQAILAT  274 (297)
T ss_pred             cchhhHHHHHHhhHHHcCCC-----ceEEEEEECCchHHHHHHHHHHHhc
Confidence            99999999999999999763     5799999999999999999999764

UDP-3-O-(R-3-hydroxymyristoyl)-GlcNAc deacetylase from E. coli, LpxC, was previously designated EnvA. This enzyme is involved in lipid-A precursor biosynthesis. It is essential for cell viability.

>PRK13186 lpxC UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase; Reviewed

Probab=100.00  E-value=1.2e-99  Score=713.61  Aligned_cols=255  Identities=41%  Similarity=0.609  Sum_probs=240.8

Q ss_pred             cccccccceeEEEEEEeecCCeEEEEEeecCCCCeEEEEc----cCceeecccccccccceeeeeecCCeEEEeHHHHHH
Q 042138           23 RLQQTLAGFIEKTGKTLHSGNVSTVRLCPEFAGKGRYFEF----RSRLIPASIDFAKESPLCTTLFKDGVQIRTVEHLLS   98 (295)
Q Consensus        23 ~~Q~Tl~~~v~~~GiGLHsG~~v~v~l~PA~~~tGi~F~~----~~~~Ipa~~~~v~~t~~~T~L~~~~~~V~TVEHLlA   98 (295)
                      ++|+||+++|+|+|+|||||++|+|||+|||+|+||+|.+    +++.|||.+++|++|++||+|++++++|+|||||||
T Consensus         2 ~~Q~Tl~~~v~~~GiGLHsG~~v~v~~~PA~~~tGI~F~R~dl~~~~~I~a~~~~v~~t~~~T~l~~~~~~V~TVEHllA   81 (295)
T PRK13186          2 IKQRTLKKPVTATGVGLHSGKKVTLTLRPAPANTGIVFRRTDLPPPVEIPARAENVGDTRLCTTLGNGGVRVSTVEHLMA   81 (295)
T ss_pred             CCcccccceEEEEEEEecCCcEEEEEEEcCCCCCEEEEEEccCCCCceEEecHHHcccCcceeEEecCCeEEEeHHHHHH
Confidence            4799999999999999999999999999999999999954    457899999999999999999999999999999999


Q ss_pred             HHhhCCCceEEEEEeecccCCCCCCCCcccccCChHHHHHHHHHcCce------------eeE-E-eCCeEEEEeeCCCe
Q 042138           99 ALEAKGVDNCKIEIHNMVADDQDVEAEVPIFDGSASAWAEAIEQVGLK------------RPW-I-REDSFVAAFPSQKV  164 (295)
Q Consensus        99 AL~glgIDN~~Iei~~~~~~~~~~g~EvPIlDGSA~~f~~~i~~aGi~------------~~~-~-~~~~~i~~~P~~~l  164 (295)
                      ||+|||||||+|||         +|+|+|||||||.||+++|++||++            +|+ + ++++|+.++|+++|
T Consensus        82 AL~glgIDN~~Iev---------dg~EvPIlDGSA~~fv~~i~~aGi~~q~~~r~~~~i~~pv~v~~~~~~i~~~P~~~~  152 (295)
T PRK13186         82 ALAGLGIDNALIEV---------DGPEVPIMDGSAAPFVFLIQSAGIVEQNAPKKFIRIKKPVRVEDGDKWAELLPYDGF  152 (295)
T ss_pred             HHHhCCCceEEEEe---------CCCCCCCccCCHHHHHHHHHHCCCeecCCccceEEecceEEEEECCEEEEEEcCCCc
Confidence            99999999999999         4999999999999999999999997            222 1 78899999999999


Q ss_pred             EEEEEEeCCCCCCcceeeeeeccCChhhHHHhccCCCccccHHHHHHHHHcCcccccCCcceEEecCCCcccCC-CCCCC
Q 042138          165 QISYGIDFPQVPAIGCQWFSTTPLEGTCYAMHIASSRTFCIYEEVERMCNAGLIKGGSLDNAIVCSASEGWLNP-PLRFP  243 (295)
Q Consensus       165 ~it~~Idf~~~~~Ig~Q~~~~~~~~~~~f~~eIA~ARTFgf~~eve~L~~~GLa~GgSldNaiVi~~~~g~lN~-~LRf~  243 (295)
                      +|+|+|||+ +|+||+|+++ +++++++|.+|||+||||||++|+|+|+++||++|||||||||++ +++|+|+ +|||+
T Consensus       153 ~i~~~idf~-~~~ig~Q~~~-~~~~~~~f~~eIa~ARTF~f~~eve~L~~~GL~~GgsleNalVi~-~~~~lN~~gLRf~  229 (295)
T PRK13186        153 RLDFTIDFD-HPAIGRQSYS-LDFSPESFVREIARARTFGFMKDVEYLRSAGLALGGSLDNAIVLD-DDRVLNPEGLRFE  229 (295)
T ss_pred             EEEEEEECC-CCccceEEEE-EeCCHHHHHHhccCCcccCcHHHHHHHHHCCccccccccceEEEC-CCcccCCCCCcCC
Confidence            999999998 7999999999 889999999999999999999999999999999999999999997 5899997 59999


Q ss_pred             CCcchhhhhhhHhhhhcccccCCCCcceEEEEEEecChHHHHHHHHHHhhc
Q 042138          244 DEPCRHKLLDFVGDLSLFARNGSQGLPVAHMVAFKGGHALHVDFARRLSGV  294 (295)
Q Consensus       244 dE~vRHKiLDlIGDL~Llg~~~~~G~~~G~i~a~k~GH~ln~~l~~~L~~~  294 (295)
                      |||||||||||||||||+|+|     ++|||+|||+||++|++|+|+|+++
T Consensus       230 dE~vRHKiLDlIGDLaL~G~p-----i~g~i~a~k~GH~ln~~l~~~l~~~  275 (295)
T PRK13186        230 DEFVRHKILDAIGDLYLLGHP-----IIGHFTAYKSGHALNNKLLRALLAD  275 (295)
T ss_pred             CcchhHHHHHHHHHHHhcCCC-----ceEEEEEECCCcHHHHHHHHHHHhC
Confidence            999999999999999999763     5799999999999999999999764

>PF03331 LpxC: UDP-3-O-acyl N-acetylglycosamine deacetylase; InterPro: IPR004463 UDP-3-O-N-acetylglucosamine deacetylases are zinc-dependent metalloamidases that catalyse the second and committed step in the biosynthesis of lipid A

Probab=100.00  E-value=4.7e-100  Score=711.59  Aligned_cols=255  Identities=45%  Similarity=0.666  Sum_probs=216.9

Q ss_pred             cccccccceeEEEEEEeecCCeEEEEEeecCCCCeEEEEc----cCceeecccccccccceeeeeecCCeEEEeHHHHHH
Q 042138           23 RLQQTLAGFIEKTGKTLHSGNVSTVRLCPEFAGKGRYFEF----RSRLIPASIDFAKESPLCTTLFKDGVQIRTVEHLLS   98 (295)
Q Consensus        23 ~~Q~Tl~~~v~~~GiGLHsG~~v~v~l~PA~~~tGi~F~~----~~~~Ipa~~~~v~~t~~~T~L~~~~~~V~TVEHLlA   98 (295)
                      ++|+||+++|+++|+|||||++|+|||+|||+|+||+|.+    +++.|||.+++|++|.+||+|+.++++|+|||||||
T Consensus         1 m~Q~Ti~~~v~~~GiGLHsG~~v~l~l~PA~~~~Gi~F~R~dl~~~~~I~a~~~~v~~t~~~T~L~~~~~~V~TVEHllA   80 (277)
T PF03331_consen    1 MKQRTIKKPVSFSGIGLHSGKPVTLTLRPAPANTGIVFRRTDLPGSPIIPAHPENVVDTSRSTTLGNGGASVSTVEHLLA   80 (277)
T ss_dssp             -EEEEESS-EEEEEE-TTT-SEEEEEEEE--TT-EEEEEETTSSS-EEEESSGGGEEEESSSEEEEETTEEEB--HHHHH
T ss_pred             CCcccCCCeEEEEEEEeecCCEEEEEEEECCCCCCEEEEEeCCCCCcEEEEEHHHccccCCccEEecCCEEEEEHHHHHH
Confidence            4799999999999999999999999999999999999964    358899999999999999999999999999999999


Q ss_pred             HHhhCCCceEEEEEeecccCCCCCCCCcccccCChHHHHHHHHHcCce------------eeEE--eCCeEEEEeeCCCe
Q 042138           99 ALEAKGVDNCKIEIHNMVADDQDVEAEVPIFDGSASAWAEAIEQVGLK------------RPWI--REDSFVAAFPSQKV  164 (295)
Q Consensus        99 AL~glgIDN~~Iei~~~~~~~~~~g~EvPIlDGSA~~f~~~i~~aGi~------------~~~~--~~~~~i~~~P~~~l  164 (295)
                      ||+|||||||+|||         +|+|+|||||||.||+++|++||++            +|+.  ++++|+.++|+++|
T Consensus        81 AL~glgIDN~~Iev---------dg~EvPilDGSa~~fv~~i~~aGi~~q~~~~~~~~i~~~v~v~~~~~~i~~~P~~~l  151 (277)
T PF03331_consen   81 ALYGLGIDNALIEV---------DGPEVPILDGSALPFVEAIEEAGIVEQDAPRKYLRIKEPVEVEDGDKFIRALPSDGL  151 (277)
T ss_dssp             HHHHCT--SEEEEE---------SSSB---TTSSSHHHHHHHHHHEEEEEEEE--EEEE-S-EEEEETTEEEEEEE-SSE
T ss_pred             HHHhCCCceEEEEE---------CCCCCCCcCCcHHHHHHHHHhcCcccccCCcceEEecceEEEEECCEEEEEEeCCCc
Confidence            99999999999999         4999999999999999999999998            1221  88999999999999


Q ss_pred             EEEEEEeCCCCCCcce-eeeeeccCChhhHHHhccCCCccccHHHHHHHHHcCcccccCCcceEEecCCCcccCC-CCCC
Q 042138          165 QISYGIDFPQVPAIGC-QWFSTTPLEGTCYAMHIASSRTFCIYEEVERMCNAGLIKGGSLDNAIVCSASEGWLNP-PLRF  242 (295)
Q Consensus       165 ~it~~Idf~~~~~Ig~-Q~~~~~~~~~~~f~~eIA~ARTFgf~~eve~L~~~GLa~GgSldNaiVi~~~~g~lN~-~LRf  242 (295)
                      +|+|+|||+ +|+||+ |+++ +++++++|.+|||+||||||++|+|+|+++||++|||||||||++ +++|+|+ +|||
T Consensus       152 ~i~~~idf~-~~~ig~~Q~~~-~~~~~~~f~~eIa~ARTF~f~~eve~L~~~GL~~Ggsl~Naiv~~-~~~~ln~~gLR~  228 (277)
T PF03331_consen  152 KITYTIDFP-HPAIGRTQSFS-FELTPETFKREIAPARTFGFLEEVEYLRKRGLAKGGSLDNAIVID-DDGVLNPPGLRF  228 (277)
T ss_dssp             EEEEEEE-S-STTTTGGCEEE-EETTHHHHHHHTTT--EEEEHHHHHHHHHTT-STT-STTTCEEE--SSSBSSTT--SS
T ss_pred             EEEEEEECC-CCCcCCceEEE-EEeCHHHHHHHhhccCccCcHHHHHHHHHCCCcccccchheEEec-cccccCcccccc
Confidence            999999999 899999 9999 889999999999999999999999999999999999999999997 5999997 5999


Q ss_pred             CCCcchhhhhhhHhhhhcccccCCCCcceEEEEEEecChHHHHHHHHHHhhc
Q 042138          243 PDEPCRHKLLDFVGDLSLFARNGSQGLPVAHMVAFKGGHALHVDFARRLSGV  294 (295)
Q Consensus       243 ~dE~vRHKiLDlIGDL~Llg~~~~~G~~~G~i~a~k~GH~ln~~l~~~L~~~  294 (295)
                      +|||||||||||||||||+|+|     ++|||+|||+||++|++|+|+|+++
T Consensus       229 ~dE~vRHKiLDliGDL~L~G~~-----~~g~i~a~k~GH~ln~~l~~~l~~~  275 (277)
T PF03331_consen  229 EDEFVRHKILDLIGDLALLGRP-----IKGHIIAYKSGHALNVELVKALLKD  275 (277)
T ss_dssp             TTHHHHHHHHHHHHHHGGGSSE-----EEEEEEEES--HHHHHHHHHHHHHC
T ss_pred             cccchhhHHHHHHHHHHhcCCC-----eEEEEEEEcCChHHHHHHHHHHHhh
Confidence            9999999999999999999763     5799999999999999999999875

Lipid A anchors lipopolysaccharide (the major constituent of the outer membrane) into the membrane in Gram negative bacteria. LpxC shows no homology to mammalian metalloamidases and is essential for cell viability, making it an important target for the development of novel antibacterial compounds []. The structure of UDP-3-O-N-acetylglucosamine deacetylase (LpxC) from Aquifex aeolicus has a two-layer alpha/beta structure similar to that of the second domain of ribosomal protein S5, only in LpxC there is a duplication giving two structural repeats of this fold, each repeat being elaborated with additional structures forming the active site. LpxC contains a zinc-binding motif, which resides at the base of an active site cleft and adjacent to a hydrophobic tunnel occupied by a fatty acid []. This tunnel accounts for the specificity of LpxC toward substrates and inhibitors bearing appropriately positioned 3-O-fatty acid substituents []. This entry represents the UDP-3-O-N-acetylglucosamine deacetylase family of proteins.; GO: 0008759 UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase activity, 0009245 lipid A biosynthetic process; PDB: 2VES_C 3U1Y_A 3P3E_A 3UHM_A 1XXE_A 2IER_A 1YH8_B 2GO4_A 2O3Z_B 2GO3_B ....

>COG0774 LpxC UDP-3-O-acyl-N-acetylglucosamine deacetylase [Cell envelope biogenesis, outer membrane]

Probab=100.00  E-value=1.5e-99  Score=704.42  Aligned_cols=255  Identities=40%  Similarity=0.601  Sum_probs=240.3

Q ss_pred             cccccccceeEEEEEEeecCCeEEEEEeecCCCCeEEEEc---c-CceeecccccccccceeeeeecC-CeEEEeHHHHH
Q 042138           23 RLQQTLAGFIEKTGKTLHSGNVSTVRLCPEFAGKGRYFEF---R-SRLIPASIDFAKESPLCTTLFKD-GVQIRTVEHLL   97 (295)
Q Consensus        23 ~~Q~Tl~~~v~~~GiGLHsG~~v~v~l~PA~~~tGi~F~~---~-~~~Ipa~~~~v~~t~~~T~L~~~-~~~V~TVEHLl   97 (295)
                      ++|+||+++|+++|+|||||+++++|++||++||||+|.+   + .+.|||..++|.+|.+||+|+++ +++|+||||||
T Consensus         2 ~~Q~Tlk~~v~~~GVGlHsG~~v~ltl~Pa~a~tGIvF~R~dl~~~~~ipA~~~~V~~T~l~T~L~~~~~~~I~TVEHLm   81 (300)
T COG0774           2 MKQRTLKRIVSLTGVGLHSGKKVTLTLRPAPANTGIVFRRTDLNPPVEIPADAENVRDTMLSTTLGNDHGVRISTVEHLM   81 (300)
T ss_pred             cchhhhhcceEEEEEEeccCcEEEEEEEecCCCCeEEEEEccCCCcccccccHHHhhccceeeeecCCCCcEEeeHHHHH
Confidence            5799999999999999999999999999999999999964   3 47899999999999999999998 99999999999


Q ss_pred             HHHhhCCCceEEEEEeecccCCCCCCCCcccccCChHHHHHHHHHcCce------------eeEE--eCCeEEEEeeCCC
Q 042138           98 SALEAKGVDNCKIEIHNMVADDQDVEAEVPIFDGSASAWAEAIEQVGLK------------RPWI--REDSFVAAFPSQK  163 (295)
Q Consensus        98 AAL~glgIDN~~Iei~~~~~~~~~~g~EvPIlDGSA~~f~~~i~~aGi~------------~~~~--~~~~~i~~~P~~~  163 (295)
                      |||+++||||++|||         +|+|+|||||||.||+++|++|||+            +|+.  ++|+|+.+.|+|+
T Consensus        82 aAl~~lgIDN~~Iev---------~g~EiPImDGSa~~Fv~li~~aGi~~q~a~~~~irI~~pV~v~~gdk~~~~~P~dg  152 (300)
T COG0774          82 AALAGLGIDNLIIEV---------DGPEIPIMDGSAAPFVELIDEAGIKEQNAKKKFIRIKKPVRVEDGDKWAEFTPYDG  152 (300)
T ss_pred             HHHHhCCCccEEEEe---------cCCcCcccCCchHHHHHHHHHhCchhhccccceEEEeccEEEecCCEEEEEecCCC
Confidence            999999999999999         4999999999999999999999998            2331  8899999999999


Q ss_pred             eEEEEEEeCCCCCCcce--eeeeeccCChhhHHHhccCCCccccHHHHHHHHHcCcccccCCcceEEecCCCcccCC-CC
Q 042138          164 VQISYGIDFPQVPAIGC--QWFSTTPLEGTCYAMHIASSRTFCIYEEVERMCNAGLIKGGSLDNAIVCSASEGWLNP-PL  240 (295)
Q Consensus       164 l~it~~Idf~~~~~Ig~--Q~~~~~~~~~~~f~~eIA~ARTFgf~~eve~L~~~GLa~GgSldNaiVi~~~~g~lN~-~L  240 (295)
                      ++++|+|||+ ||+||+  |.|. ++.+.++|.+|||+||||||++|||+||++||++|||||||||++ +++|||+ ||
T Consensus       153 ~r~~~~IdF~-~p~Ig~~~q~~~-~~~~~~sf~~eIa~ARTFGF~~dvE~L~~~gLalGGSleNaiVid-d~~vlN~~gL  229 (300)
T COG0774         153 FRLSYTIDFD-HPAIGRQWQSFE-FDFSAESFRKEIARARTFGFMRDVEYLRSKGLALGGSLENAIVID-DDRVLNPEGL  229 (300)
T ss_pred             cEEEEEEecC-CcccCCcceeEE-EecchHHHHHHhhhhhhhhhHHHHHHHHHcCccccccccceEEEC-CCceeCCccc
Confidence            9999999998 899999  6677 778888999999999999999999999999999999999999997 5999995 89


Q ss_pred             CCCCCcchhhhhhhHhhhhcccccCCCCcceEEEEEEecChHHHHHHHHHHhhc
Q 042138          241 RFPDEPCRHKLLDFVGDLSLFARNGSQGLPVAHMVAFKGGHALHVDFARRLSGV  294 (295)
Q Consensus       241 Rf~dE~vRHKiLDlIGDL~Llg~~~~~G~~~G~i~a~k~GH~ln~~l~~~L~~~  294 (295)
                      ||+||||||||||+||||||+|+|     ++|||.|||+||+||++|+|+|+++
T Consensus       230 Rf~dEfVRHKiLDaiGDL~l~G~p-----~ig~f~ayk~gH~lN~~l~k~iLad  278 (300)
T COG0774         230 RFEDEFVRHKILDAIGDLYLLGHP-----IIGAFTAYKSGHALNNALLKAILAD  278 (300)
T ss_pred             cCCCcchhhhHHHhhhhHHhcCCc-----ceEEEEEeccchHHHHHHHHHHHhC
Confidence            999999999999999999999763     6899999999999999999999875

>PRK13187 UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase; Reviewed

Probab=100.00  E-value=2.4e-95  Score=686.08  Aligned_cols=253  Identities=30%  Similarity=0.462  Sum_probs=235.2

Q ss_pred             CcccccccceeEEEEEEeecCCeEEEEEeecCCCC---eEEEEc---c-Cc-eeecccccccccceeeeeec-CCeEEEe
Q 042138           22 GRLQQTLAGFIEKTGKTLHSGNVSTVRLCPEFAGK---GRYFEF---R-SR-LIPASIDFAKESPLCTTLFK-DGVQIRT   92 (295)
Q Consensus        22 ~~~Q~Tl~~~v~~~GiGLHsG~~v~v~l~PA~~~t---Gi~F~~---~-~~-~Ipa~~~~v~~t~~~T~L~~-~~~~V~T   92 (295)
                      ..+|+||+++|+++|+|||||++|+|||+|||+||   ||+|.+   + .+ .|||.+++|.+|++||+|++ ++++|+|
T Consensus         8 ~~~Q~Tl~~~v~~~GiGLHSG~~v~vtl~PA~~~t~~~GIvF~R~d~~~~~~~Ipa~~~~v~~t~l~T~L~~~~~~~V~T   87 (304)
T PRK13187          8 ATSQGTLARPLTIDGHGLHTGRRVGVRILPARPEDGVTGIVFRRVEQGRTLATLPVDPALRRAQPLCTMLRNADGVGVRT   87 (304)
T ss_pred             ccccccccceEEEEEEEecCCcEEEEEEEcCCCCCCCccEEEEEccCCCCceeEEcCHHHccCCcceeEEecCCCcEEee
Confidence            45799999999999999999999999999999999   999964   2 34 69999999999999999998 7999999


Q ss_pred             HHHHHHHHhhCCCceEEEEEeecccCCCCCCCCcccccCChHHHHHHHHHcCce------------eeE-E-eCC----e
Q 042138           93 VEHLLSALEAKGVDNCKIEIHNMVADDQDVEAEVPIFDGSASAWAEAIEQVGLK------------RPW-I-RED----S  154 (295)
Q Consensus        93 VEHLlAAL~glgIDN~~Iei~~~~~~~~~~g~EvPIlDGSA~~f~~~i~~aGi~------------~~~-~-~~~----~  154 (295)
                      ||||||||++||||||+|||         +|+|+|||||||.||+++|++||++            +|+ + +++    +
T Consensus        88 VEHLlAAL~glgIDN~~Iev---------dg~EvPIlDGSA~~fv~~i~~aGi~~q~~~r~~~~i~~pv~v~~~~~~~~~  158 (304)
T PRK13187         88 VEHLLASLLACEIDHAIVEL---------DAEEVPILDGSATPWVDAIRACGRVALDAPKRFIRVLRTVVVTDGEGEQRR  158 (304)
T ss_pred             HHHHHHHHHhCCCceEEEEe---------CCCCCCcccCCHHHHHHHHHhcCCeecCCccceEEeCceEEEEeCCCcccE
Confidence            99999999999999999999         4999999999999999999999997            222 1 666    9


Q ss_pred             EEEEeeCCCeEEEEEEeCCCCCCcceeeeeeccCChhhHHHhccCCCccccHH------HHHHHHHcCcccccCCcceEE
Q 042138          155 FVAAFPSQKVQISYGIDFPQVPAIGCQWFSTTPLEGTCYAMHIASSRTFCIYE------EVERMCNAGLIKGGSLDNAIV  228 (295)
Q Consensus       155 ~i~~~P~~~l~it~~Idf~~~~~Ig~Q~~~~~~~~~~~f~~eIA~ARTFgf~~------eve~L~~~GLa~GgSldNaiV  228 (295)
                      |+.++|+++|+|+|+|||+   .||+|+++ +++++++|.+|||+||||||++      |+|+|+++||++|||||||||
T Consensus       159 ~i~~~P~~~~~it~~idf~---~ig~Q~~~-~~~~~~~f~~eIA~ARTFgf~~ev~~~~~~e~l~~~GLa~GgSl~NAiV  234 (304)
T PRK13187        159 EMRIEPAPRYELSVRNDLR---GFGEMHWD-GALTPAAFATEIAPSRSYGRVKWAVPAILAGYLRGVPILRGARPSCTAS  234 (304)
T ss_pred             EEEEEcCCCcEEEEEEECc---ccCceEEE-EeCCHHHHHHhccCcceEEeehhccchhhHHHHHhCCccccccccceEE
Confidence            9999999999999999995   49999999 8999999999999999999999      559999999999999999999


Q ss_pred             ecCCCcccCCCCCCCCCcchhhhhhhHhhhhcccccCCCCcceEEEEEEecChHHHHHHHHHHhhc
Q 042138          229 CSASEGWLNPPLRFPDEPCRHKLLDFVGDLSLFARNGSQGLPVAHMVAFKGGHALHVDFARRLSGV  294 (295)
Q Consensus       229 i~~~~g~lN~~LRf~dE~vRHKiLDlIGDL~Llg~~~~~G~~~G~i~a~k~GH~ln~~l~~~L~~~  294 (295)
                      ++ +++|+| +|||+||||||||||+||||||+|+|     ++|||+|||+||++|++|+++|+++
T Consensus       235 i~-~~~vl~-gLRf~dE~VRHKiLDlIGDL~L~G~p-----i~g~iia~k~GH~ln~~l~~~L~~~  293 (304)
T PRK13187        235 IV-GKRVLG-GMRLPDEFVRHRVLDLVGDLALAGAP-----LLARVSALRPSHEMNFRLVDALLAE  293 (304)
T ss_pred             Ec-CCceec-CCcCCCcchhhHHHHHhhHHHhcCCC-----ceEEEEEECCchHHHHHHHHHHHhC
Confidence            97 589998 89999999999999999999999763     5799999999999999999999764

>PRK13188 bifunctional UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase/(3R)-hydroxymyristoyl-[acyl-carrier-protein] dehydratase; Reviewed

Probab=100.00  E-value=6e-93  Score=702.27  Aligned_cols=253  Identities=39%  Similarity=0.607  Sum_probs=235.5

Q ss_pred             cccccccceeEEEEEEeecCCeEEEEEeecCCCCeEEEEc----cCceeecccccccccceeeeeecCCeEEEeHHHHHH
Q 042138           23 RLQQTLAGFIEKTGKTLHSGNVSTVRLCPEFAGKGRYFEF----RSRLIPASIDFAKESPLCTTLFKDGVQIRTVEHLLS   98 (295)
Q Consensus        23 ~~Q~Tl~~~v~~~GiGLHsG~~v~v~l~PA~~~tGi~F~~----~~~~Ipa~~~~v~~t~~~T~L~~~~~~V~TVEHLlA   98 (295)
                      .+|+||+++++++|+|||||++|+||++|||+|+||+|.+    +++.|||.+++|++|++||+|+.+|++|+|||||||
T Consensus         3 ~~q~Tl~~~v~~~GiGlHsG~~~~~~~~Pa~~~~Gi~F~r~d~~~~~~i~a~~~~v~~t~~~T~l~~~~~~v~TvEHlla   82 (464)
T PRK13188          3 IKQRTIKKEVSLQGVGLHTGKEVTITFKPAPENHGYKFKRTDLEGQPIIDADVDNVVDTERGTTLEKNGVKVHTVEHVLA   82 (464)
T ss_pred             cccccccceEEEEEEEccCCcEEEEEEEcCCCCCcEEEEEecCCCCceeEecHHHccCCcceeEEccCCeEEEeHHHHHH
Confidence            4699999999999999999999999999999999999954    346799999999999999999999999999999999


Q ss_pred             HHhhCCCceEEEEEeecccCCCCCCCCcccccCChHHHHHHHHHcCce------------eeE-E-e--CCeEEEEeeCC
Q 042138           99 ALEAKGVDNCKIEIHNMVADDQDVEAEVPIFDGSASAWAEAIEQVGLK------------RPW-I-R--EDSFVAAFPSQ  162 (295)
Q Consensus        99 AL~glgIDN~~Iei~~~~~~~~~~g~EvPIlDGSA~~f~~~i~~aGi~------------~~~-~-~--~~~~i~~~P~~  162 (295)
                      ||+|||||||+|||         +|+|+|||||||.||+++|++||++            +|+ + +  +++|+.++|++
T Consensus        83 Al~~~gIdn~~iei---------~g~E~Pi~DGSa~~f~~~i~~agi~~~~~~~~~~~i~~~v~v~~~~~~~~i~~~P~~  153 (464)
T PRK13188         83 ALYGLGIDNCLIEL---------DGPEPPIMDGSSKPFVEAIEEAGIVEQDAPRNYYVIKETIEYHDEETGSEIIALPLD  153 (464)
T ss_pred             HHHhCCCcEEEEEe---------CCCCCCccCCCHHHHHHHHHHcCCeecCCccceEEeCceEEEEECCCCEEEEEEcCC
Confidence            99999999999999         4999999999999999999999997            222 1 4  57999999999


Q ss_pred             CeEEEEEEeCCCCCCcceeeeeeccCChhhHHHhccCCCccccHHHHHHHHHcCcccccCCcceEEe-------------
Q 042138          163 KVQISYGIDFPQVPAIGCQWFSTTPLEGTCYAMHIASSRTFCIYEEVERMCNAGLIKGGSLDNAIVC-------------  229 (295)
Q Consensus       163 ~l~it~~Idf~~~~~Ig~Q~~~~~~~~~~~f~~eIA~ARTFgf~~eve~L~~~GLa~GgSldNaiVi-------------  229 (295)
                      +|+|||+|||+ +|+||+|+++ +... ++|.+|||+||||||++|+|+|+++||++|||||||||+             
T Consensus       154 ~~~i~~~idf~-~~~ig~q~~~-~~~~-~~f~~eia~aRTF~~~~~ve~l~~~gl~~Ggsl~naiv~~~~~~~~~~~~~~  230 (464)
T PRK13188        154 DFRITVMVDFD-SKVLGSQHAT-LFDL-SEFKKEIAPARTFVFLHEVEALLEQGLIKGGDLDNAIVIVDKEMSQEELDKL  230 (464)
T ss_pred             CcEEEEEEECC-CCccceeEEE-EeCh-HHHHHhcCccceeEeHHHHHHHHHCCccccccccceEEEEccccchhhhhhh
Confidence            99999999998 7999999999 5423 399999999999999999999999999999999999999             


Q ss_pred             -----------cCCCcccCC-CCCCCCCcchhhhhhhHhhhhcccccCCCCcceEEEEEEecChHHHHHHHHHHhh
Q 042138          230 -----------SASEGWLNP-PLRFPDEPCRHKLLDFVGDLSLFARNGSQGLPVAHMVAFKGGHALHVDFARRLSG  293 (295)
Q Consensus       230 -----------~~~~g~lN~-~LRf~dE~vRHKiLDlIGDL~Llg~~~~~G~~~G~i~a~k~GH~ln~~l~~~L~~  293 (295)
                                 + +++|+|+ +|||+||||||||||+||||||+|+|     ++|||+|||+||++|++|+|+|++
T Consensus       231 ~~~~~~~~~~~~-~~~~ln~~~LR~~dE~vRHKiLD~iGDl~L~G~~-----~~g~~~a~k~gH~ln~~l~~~l~~  300 (464)
T PRK13188        231 AKKFGKDHISVK-ENGILNNRPLRFPNEPARHKLLDVIGDLALIGKP-----IKGRIIAARPGHAINVEFAKKLKK  300 (464)
T ss_pred             hhhhcccccccC-CCeEeCCCCCcCCCcchhhHHHHHHhhHHhcCCC-----ceEEEEEECCchHHHHHHHHHHHH
Confidence                       6 5899997 79999999999999999999999763     579999999999999999999976

>cd01434 EFG_mtEFG1_IV EFG_mtEFG1_IV: domains similar to domain IV of the bacterial translational elongation factor (EF) EF-G

Probab=83.59  E-value=1.1  Score=36.36  Aligned_cols=75  Identities=21%  Similarity=0.136  Sum_probs=41.7

Q ss_pred             cccccceeEEEEEEeecC--------CeEEEEEeecCCCCeEEEEc--cCceeecccccccccceeeeeecCCeEEEeHH
Q 042138           25 QQTLAGFIEKTGKTLHSG--------NVSTVRLCPEFAGKGRYFEF--RSRLIPASIDFAKESPLCTTLFKDGVQIRTVE   94 (295)
Q Consensus        25 Q~Tl~~~v~~~GiGLHsG--------~~v~v~l~PA~~~tGi~F~~--~~~~Ipa~~~~v~~t~~~T~L~~~~~~V~TVE   94 (295)
                      +-||.++++..  +.|.-        -.+.|++.|++.+.|+.|..  ....+|..+...+......++..|        
T Consensus         2 rEti~~~~~~~--~~~~~~~gg~~~~a~v~l~v~P~~~g~g~~~~~~~~~~~lp~~~~~ai~~g~~~a~~~G--------   71 (116)
T cd01434           2 RETITKPAEFE--YRHKKQSGGAGQYGHVVLEIEPLPRGSGFEFVNKIVGGAIPKEYIPAVEKGFREALEKG--------   71 (116)
T ss_pred             CcccCceeeEE--EEEEEcCCCCCeEEEEEEEEEECCCCCCCEEEEeccCCccCHHHHHHHHHHHHHHHhcC--------
Confidence            34777776655  33321        23789999998889998853  222233222221111111111111        


Q ss_pred             HHHHHHhhCCCceEEEEEe
Q 042138           95 HLLSALEAKGVDNCKIEIH  113 (295)
Q Consensus        95 HLlAAL~glgIDN~~Iei~  113 (295)
                          -|.|+.+.|+.|.|.
T Consensus        72 ----pl~G~pv~~v~V~l~   86 (116)
T cd01434          72 ----PLAGYPVVDVKVTLY   86 (116)
T ss_pred             ----cccCCccccEEEEEE
Confidence                146888999999995

Included in this group is a domain of mitochondrial Elongation factor G1 (mtEFG1) proteins homologous to domain IV of EF-G. Eukaryotic cells harbor 2 protein synthesis systems: one localized in the cytoplasm, the other in the mitochondria. Most factors regulating mitochondrial protein synthesis are encoded by nuclear genes, translated in the cytoplasm, and then transported to the mitochondria. The eukaryotic system of elongation factor (EF) components is more complex than that in prokaryotes, with both cytoplasmic and mitochondrial elongation factors and multiple isoforms being expressed in certain species. During the process of peptide synthesis and tRNA site changes, the ribosome is moved along the mRNA a distance equal to one codon with the addition of each amino acid. In bacteria this translocation step is catalyzed by EF-G_GTP, which is hydrolyzed to provi

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	295
2ves_A	299	Crystal Structure Of Lpxc From Pseudomonas Aerugino		4e-29
1xxe_A	282	Rdc Refined Solution Structure Of The AalpxcTU-514		1e-28
2go3_A	267	Crystal Structure Of Aquifex Aeolicus Lpxc Complexe		8e-28
2j65_A	271	Structure Of Lpxc From Aquifex Aeolicus In Complex		9e-28
1p42_A	270	Crystal Structure Of Aquifex Aeolicus Lpxc Deacetyl		9e-28
3p3c_A	274	Crystal Structure Of The Aquifex Aeolicus LpxcLPC-0		9e-28
2jt2_A	274	Solution Structure Of The Aquifex Aeolicus Lpxc- Ch		1e-27
3nzk_A	311	Structure Of Lpxc From Yersinia Enterocolitica Comp		1e-24
3p3g_A	300	Crystal Structure Of The Escherichia Coli LpxcLPC-0		3e-24

>pdb|2VES|A Chain A, Crystal Structure Of Lpxc From Pseudomonas Aeruginosa Complexed With The Potent Bb-78485 Inhibitor Length = 299

Iteration: 1
 Score =  125 bits (313), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 92/286 (32%), Positives = 133/286 (46%), Gaps = 34/286 (11%)
Query: 25  QQTLAGFIEKTGKTLHSGNVSTVRLCPEFAGKGRYFEFRSRL-----IPASIDFAKESPL 79
           Q+TL   I  TG  LHSG    + L P     G  F  R+ L     IPA  +   E+ +
Sbjct: 4   QRTLKNIIRATGVGLHSGEKVYLTLKPAPVDTGIVFS-RTDLDPVVEIPARAENVGETTM 62
Query: 80  CTTLFKDGVQIRTVEHLLSALEAKGVDNCKIEIHNMVADDQDVEAEVPIFDGSASAWAEA 139
            TTL K  V++ TVEHLLSA+   G+DN  +E+           +EVPI DGSA  +   
Sbjct: 63  STTLVKGDVKVDTVEHLLSAMAGLGIDNAYVELS---------ASEVPIMDGSAGPFVFL 113
Query: 140 IEQVGLK-----RPWIR--------EDSFVAAF-PSQKVQISYGIDFPQVPAIGCQWFST 185
           I+  GL+     + +IR        E    A F P    ++S+ IDF      G    ++
Sbjct: 114 IQSAGLQEQEAAKKFIRIKREVSVEEGDKRAVFVPFDGFKVSFEIDFDHPVFRGRTQQAS 173
Query: 186 TPLEGTCYAMHIASSRTFCIYEEVERMCNAGLIKGGSLDNAIVCSASEGWLNPPLRFPDE 245
                T +   ++ +RTF    ++E + +  L  GGS++NAIV   +       LR+ DE
Sbjct: 174 VDFSSTSFVKEVSRARTFGFMRDIEYLRSQNLALGGSVENAIVVDENRVLNEDGLRYEDE 233
Query: 246 PCRHKLLDFVGDLSLFARNGSQGLPVAHMVAFKGGHALHVDFARRL 291
             +HK+LD +GDL L   +      +     FK GHAL+    R L
Sbjct: 234 FVKHKILDAIGDLYLLGNS-----LIGEFRGFKSGHALNNQLLRTL 274

>pdb|1XXE|A Chain A, Rdc Refined Solution Structure Of The AalpxcTU-514 Complex Length = 282

Iteration: 1
 Score =  123 bits (309), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 92/283 (32%), Positives = 136/283 (48%), Gaps = 35/283 (12%)
Query: 24  LQQTLAGFIEKTGKTLHSGNVSTVRLCPEFAGKGRYFEFRSRLIPASIDFAKESPLCTTL 83
           L++T+   +   G  +H+G  S + + PE  G G  F      IPA  +F   +   T L
Sbjct: 3   LEKTVKEKLSFEGVGIHTGEYSKLIIHPEKEGTGIRFFKNGVYIPARHEFVVHTNHSTDL 62
Query: 84  FKDGVQIRTVEHLLSALEAKGVDNCKIEIHNMVADDQDVEAEVPIFDGSASAWAEAIEQV 143
              G +I+TVEH+LS L    + N  IE+         +  E+PI DGS   + EAI + 
Sbjct: 63  GFKGQRIKTVEHILSVLHLLEITNVTIEV---------IGNEIPILDGSGWEFYEAIRKN 113
Query: 144 GLKR-----------PWIREDS--FVAAFPSQKVQISYGIDFPQVPAIGCQWFSTTPLEG 190
            L +           P I ED    + A PS  ++++Y  +F     +G Q F  T +EG
Sbjct: 114 ILNQNREIDYFVVEEPIIVEDEGRLIKAEPSDTLEVTYEGEFKNF--LGRQKF--TFVEG 169
Query: 191 TCYAMHIASSRTFCIYEEVERMCNAGLIKGGSLDNAIVCSASEGWLNPPLRFPDEPCRHK 250
                 I  +RTFC   E+E +   GL KGGSL N +V    + +    LR+ +EP RHK
Sbjct: 170 N--EEEIVLARTFCFDWEIEHIKKVGLGKGGSLKNTLVLGKDKVYNPEGLRYENEPVRHK 227
Query: 251 LLDFVGDLSLFARNGSQGLPV-AHMVAFKGGHALHVDFARRLS 292
           + D +GDL L       G PV     +F+GGH+L+V   + L+
Sbjct: 228 VFDLIGDLYLL------GSPVKGKFYSFRGGHSLNVKLVKELA 264

>pdb|2GO3|A Chain A, Crystal Structure Of Aquifex Aeolicus Lpxc Complexed With Imidazole. Length = 267

Iteration: 1
 Score =  120 bits (301), Expect = 8e-28,   Method: Compositional matrix adjust.
 Identities = 91/283 (32%), Positives = 135/283 (47%), Gaps = 35/283 (12%)
Query: 24  LQQTLAGFIEKTGKTLHSGNVSTVRLCPEFAGKGRYFEFRSRLIPASIDFAKESPLCTTL 83
           L++T+   +   G  +H+G  S + + PE  G G  F      IPA  +F   +   T L
Sbjct: 3   LEKTVKEKLSFEGVGIHTGEYSKLIIHPEKEGTGIRFFKNGVYIPARHEFVVHTNHSTDL 62
Query: 84  FKDGVQIRTVEHLLSALEAKGVDNCKIEIHNMVADDQDVEAEVPIFDGSASAWAEAIEQV 143
              G +I+TVEH+LS L    + N  IE+         +  E+PI DGS   + EAI + 
Sbjct: 63  GFKGQRIKTVEHILSVLHLLEITNVTIEV---------IGNEIPILDGSGWEFYEAIRKN 113
Query: 144 GLKR-----------PWIREDS--FVAAFPSQKVQISYGIDFPQVPAIGCQWFSTTPLEG 190
            L +           P I ED    + A PS  ++++Y  +F     +G Q F  T +EG
Sbjct: 114 ILNQNREIDYFVVEEPIIVEDEGRLIKAEPSDTLEVTYEGEFKNF--LGRQKF--TFVEG 169
Query: 191 TCYAMHIASSRTFCIYEEVERMCNAGLIKGGSLDNAIVCSASEGWLNPPLRFPDEPCRHK 250
                 I  +RTF    E+E +   GL KGGSL N +V    + +    LR+ +EP RHK
Sbjct: 170 N--EEEIVLARTFAFDWEIEHIKKVGLGKGGSLKNTLVLGKDKVYNPEGLRYENEPVRHK 227
Query: 251 LLDFVGDLSLFARNGSQGLPV-AHMVAFKGGHALHVDFARRLS 292
           + D +GDL L       G PV     +F+GGH+L+V   + L+
Sbjct: 228 VFDLIGDLYLL------GSPVKGKFYSFRGGHSLNVKLVKELA 264

>pdb|2J65|A Chain A, Structure Of Lpxc From Aquifex Aeolicus In Complex With Udp Length = 271

Iteration: 1
 Score =  120 bits (301), Expect = 9e-28,   Method: Compositional matrix adjust.
 Identities = 91/283 (32%), Positives = 135/283 (47%), Gaps = 35/283 (12%)
Query: 24  LQQTLAGFIEKTGKTLHSGNVSTVRLCPEFAGKGRYFEFRSRLIPASIDFAKESPLCTTL 83
           L++T+   +   G  +H+G  S + + PE  G G  F      IPA  +F   +   T L
Sbjct: 3   LEKTVKEKLSFEGVGIHTGEYSKLIIHPEKEGTGIRFFKNGVYIPARHEFVVHTNHSTDL 62
Query: 84  FKDGVQIRTVEHLLSALEAKGVDNCKIEIHNMVADDQDVEAEVPIFDGSASAWAEAIEQV 143
              G +I+TVEH+LS L    + N  IE+         +  E+PI DGS   + EAI + 
Sbjct: 63  GFKGQRIKTVEHILSVLHLLEITNVTIEV---------IGNEIPILDGSGWEFYEAIRKN 113
Query: 144 GLKR-----------PWIREDS--FVAAFPSQKVQISYGIDFPQVPAIGCQWFSTTPLEG 190
            L +           P I ED    + A PS  ++++Y  +F     +G Q F  T +EG
Sbjct: 114 ILNQNREIDYFVVEEPIIVEDEGRLIKAEPSDTLEVTYEGEFKNF--LGRQKF--TFVEG 169
Query: 191 TCYAMHIASSRTFCIYEEVERMCNAGLIKGGSLDNAIVCSASEGWLNPPLRFPDEPCRHK 250
                 I  +RTF    E+E +   GL KGGSL N +V    + +    LR+ +EP RHK
Sbjct: 170 N--EEEIVLARTFAFDWEIEHIKKVGLGKGGSLKNTLVLGKDKVYNPEGLRYENEPVRHK 227
Query: 251 LLDFVGDLSLFARNGSQGLPV-AHMVAFKGGHALHVDFARRLS 292
           + D +GDL L       G PV     +F+GGH+L+V   + L+
Sbjct: 228 VFDLIGDLYLL------GSPVKGKFYSFRGGHSLNVKLVKELA 264

>pdb|1P42|A Chain A, Crystal Structure Of Aquifex Aeolicus Lpxc Deacetylase (zinc-inhibited Form) Length = 270

Iteration: 1
 Score =  120 bits (301), Expect = 9e-28,   Method: Compositional matrix adjust.
 Identities = 91/283 (32%), Positives = 135/283 (47%), Gaps = 35/283 (12%)
Query: 24  LQQTLAGFIEKTGKTLHSGNVSTVRLCPEFAGKGRYFEFRSRLIPASIDFAKESPLCTTL 83
           L++T+   +   G  +H+G  S + + PE  G G  F      IPA  +F   +   T L
Sbjct: 2   LEKTVKEKLSFEGVGIHTGEYSKLIIHPEKEGTGIRFFKNGVYIPARHEFVVHTNHSTDL 61
Query: 84  FKDGVQIRTVEHLLSALEAKGVDNCKIEIHNMVADDQDVEAEVPIFDGSASAWAEAIEQV 143
              G +I+TVEH+LS L    + N  IE+         +  E+PI DGS   + EAI + 
Sbjct: 62  GFKGQRIKTVEHILSVLHLLEITNVTIEV---------IGNEIPILDGSGWEFYEAIRKN 112
Query: 144 GLKR-----------PWIREDS--FVAAFPSQKVQISYGIDFPQVPAIGCQWFSTTPLEG 190
            L +           P I ED    + A PS  ++++Y  +F     +G Q F  T +EG
Sbjct: 113 ILNQNREIDYFVVEEPIIVEDEGRLIKAEPSDTLEVTYEGEFKNF--LGRQKF--TFVEG 168
Query: 191 TCYAMHIASSRTFCIYEEVERMCNAGLIKGGSLDNAIVCSASEGWLNPPLRFPDEPCRHK 250
                 I  +RTF    E+E +   GL KGGSL N +V    + +    LR+ +EP RHK
Sbjct: 169 N--EEEIVLARTFAFDWEIEHIKKVGLGKGGSLKNTLVLGKDKVYNPEGLRYENEPVRHK 226
Query: 251 LLDFVGDLSLFARNGSQGLPV-AHMVAFKGGHALHVDFARRLS 292
           + D +GDL L       G PV     +F+GGH+L+V   + L+
Sbjct: 227 VFDLIGDLYLL------GSPVKGKFYSFRGGHSLNVKLVKELA 263

>pdb|3P3C|A Chain A, Crystal Structure Of The Aquifex Aeolicus LpxcLPC-009 Complex Length = 274

Iteration: 1
 Score =  120 bits (301), Expect = 9e-28,   Method: Compositional matrix adjust.
 Identities = 91/283 (32%), Positives = 135/283 (47%), Gaps = 35/283 (12%)
Query: 24  LQQTLAGFIEKTGKTLHSGNVSTVRLCPEFAGKGRYFEFRSRLIPASIDFAKESPLCTTL 83
           L++T+   +   G  +H+G  S + + PE  G G  F      IPA  +F   +   T L
Sbjct: 2   LEKTVKEKLSFEGVGIHTGEYSKLIIHPEKEGTGIRFFKNGVYIPARHEFVVHTNHSTDL 61
Query: 84  FKDGVQIRTVEHLLSALEAKGVDNCKIEIHNMVADDQDVEAEVPIFDGSASAWAEAIEQV 143
              G +I+TVEH+LS L    + N  IE+         +  E+PI DGS   + EAI + 
Sbjct: 62  GFKGQRIKTVEHILSVLHLLEITNVTIEV---------IGNEIPILDGSGWEFYEAIRKN 112
Query: 144 GLKR-----------PWIREDS--FVAAFPSQKVQISYGIDFPQVPAIGCQWFSTTPLEG 190
            L +           P I ED    + A PS  ++++Y  +F     +G Q F  T +EG
Sbjct: 113 ILNQNREIDYFVVEEPIIVEDEGRLIKAEPSDTLEVTYEGEFKNF--LGRQKF--TFVEG 168
Query: 191 TCYAMHIASSRTFCIYEEVERMCNAGLIKGGSLDNAIVCSASEGWLNPPLRFPDEPCRHK 250
                 I  +RTF    E+E +   GL KGGSL N +V    + +    LR+ +EP RHK
Sbjct: 169 N--EEEIVLARTFAFDWEIEHIKKVGLGKGGSLKNTLVLGKDKVYNPEGLRYENEPVRHK 226
Query: 251 LLDFVGDLSLFARNGSQGLPV-AHMVAFKGGHALHVDFARRLS 292
           + D +GDL L       G PV     +F+GGH+L+V   + L+
Sbjct: 227 VFDLIGDLYLL------GSPVKGKFYSFRGGHSLNVKLVKELA 263

>pdb|2JT2|A Chain A, Solution Structure Of The Aquifex Aeolicus Lpxc- Chir-090 Complex Length = 274

Iteration: 1
 Score =  120 bits (300), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 91/283 (32%), Positives = 135/283 (47%), Gaps = 35/283 (12%)
Query: 24  LQQTLAGFIEKTGKTLHSGNVSTVRLCPEFAGKGRYFEFRSRLIPASIDFAKESPLCTTL 83
           L++T+   +   G  +H+G  S + + PE  G G  F      IPA  +F   +   T L
Sbjct: 3   LEKTVKEKLSFEGVGIHTGEYSKLIIHPEKEGTGIRFFKNGVYIPARHEFVVHTNHSTDL 62
Query: 84  FKDGVQIRTVEHLLSALEAKGVDNCKIEIHNMVADDQDVEAEVPIFDGSASAWAEAIEQV 143
              G +I+TVEH+LS L    + N  IE+         +  E+PI DGS   + EAI + 
Sbjct: 63  GFKGQRIKTVEHILSVLHLLEITNVTIEV---------IGNEIPILDGSGWEFYEAIRKN 113
Query: 144 GLKR-----------PWIREDS--FVAAFPSQKVQISYGIDFPQVPAIGCQWFSTTPLEG 190
            L +           P I ED    + A PS  ++++Y  +F     +G Q F  T +EG
Sbjct: 114 ILNQNREIDYFVVEEPIIVEDEGRLIKAEPSDTLEVTYEGEFKNF--LGRQKF--TFVEG 169
Query: 191 TCYAMHIASSRTFCIYEEVERMCNAGLIKGGSLDNAIVCSASEGWLNPPLRFPDEPCRHK 250
                 I  +RTF    E+E +   GL KGGSL N +V    + +    LR+ +EP RHK
Sbjct: 170 N--EEEIVLARTFAFDWEIEHIKKVGLGKGGSLKNTLVLGKDKVYNPEGLRYENEPVRHK 227
Query: 251 LLDFVGDLSLFARNGSQGLPV-AHMVAFKGGHALHVDFARRLS 292
           + D +GDL L       G PV     +F+GGH+L+V   + L+
Sbjct: 228 VFDLIGDLYLL------GSPVKGKFYSFRGGHSLNVKLVKELA 264

>pdb|3NZK|A Chain A, Structure Of Lpxc From Yersinia Enterocolitica Complexed With Chir090 Inhibitor Length = 311

Iteration: 1
 Score =  110 bits (274), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 89/282 (31%), Positives = 130/282 (46%), Gaps = 39/282 (13%)
Query: 25  QQTLAGFIEKTGKTLHSGNVSTVRLCPEFAGKGRYFEFRSRL-----IPASIDFAKESPL 79
           Q+TL   ++ TG  LH+G   T+ + P  A  G  +  R+ L      PA     +++ L
Sbjct: 9   QRTLKRIVQATGVGLHTGKKVTLTMRPAPANTGVIYR-RTDLNPPVDFPADAKSVRDTML 67
Query: 80  CTTLFKD-GVQIRTVEHLLSALEAKGVDNCKIEIHNMVADDQDVEAEVPIFDGSASAWA- 137
           CT L  +  V+I TVEHL +AL   G+DN  IE++           EVPI DGSAS +  
Sbjct: 68  CTCLVNEHDVRISTVEHLNAALAGLGIDNIIIEVN---------APEVPIMDGSASPFVY 118
Query: 138 ----EAIEQVGLKRPWIR---------EDSFVAAFPSQKVQISYGIDFPQVPAI--GCQW 182
                 IE++   + ++R          D +    P    ++ + IDF   PAI    Q 
Sbjct: 119 LLLDAGIEELNSAKKFLRLKETVRVEDGDKWAELSPFNGFRLDFTIDFNH-PAIDSSTQR 177
Query: 183 FSTTPLEGTCYAMHIASSRTFCIYEEVERMCNAGLIKGGSLDNAIVCSASEGWLNPPLRF 242
           +         +   I+ +RTF    ++E + + GL  GGS D AIV           LRF
Sbjct: 178 YRLD-FSADSFVRQISRARTFGFMRDIEYLQSRGLCLGGSFDCAIVVDDYRVLNEDGLRF 236
Query: 243 PDEPCRHKLLDFVGDLSLFARNGSQGLPVAHMVAFKGGHALH 284
            DE  RHK+LD +GDL +   N      +    A+K GHAL+
Sbjct: 237 EDEFVRHKMLDAIGDLFMCGHN-----IIGAFTAYKSGHALN 273

>pdb|3P3G|A Chain A, Crystal Structure Of The Escherichia Coli LpxcLPC-009 Complex Length = 300

Iteration: 1
 Score =  108 bits (270), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 87/282 (30%), Positives = 130/282 (46%), Gaps = 39/282 (13%)
Query: 25  QQTLAGFIEKTGKTLHSGNVSTVRLCPEFAGKGRYFEFRSRL-----IPASIDFAKESPL 79
           Q+TL   ++ TG  LH+G   T+ L P  A  G  +  R+ L      PA     +++ L
Sbjct: 4   QRTLKRIVQATGVGLHTGKKVTLTLRPAPANTGVIYR-RTDLNPPVDFPADAKSVRDTML 62
Query: 80  CTTLFKD-GVQIRTVEHLLSALEAKGVDNCKIEIHNMVADDQDVEAEVPIFDGSASAWA- 137
           CT L  +  V+I TVEHL +AL   G+DN  IE++           E+PI DGSA+ +  
Sbjct: 63  CTCLVNEHDVRISTVEHLNAALAGLGIDNIVIEVN---------APEIPIMDGSAAPFVY 113
Query: 138 ----EAIEQVGLKRPWIR---------EDSFVAAFPSQKVQISYGIDFPQVPAIGC--QW 182
                 I+++   + ++R          D +    P     + + IDF   PAI    Q 
Sbjct: 114 LLLDAGIDELNCAKKFVRIKETVRVEDGDKWAEFKPYNGFSLDFTIDFNH-PAIDSSNQR 172
Query: 183 FSTTPLEGTCYAMHIASSRTFCIYEEVERMCNAGLIKGGSLDNAIVCSASEGWLNPPLRF 242
           ++        +   I+ +RTF    ++E + + GL  GGS D AIV           LRF
Sbjct: 173 YAMN-FSADAFMRQISRARTFGFMRDIEYLQSRGLCLGGSFDCAIVVDDYRVLNEDGLRF 231
Query: 243 PDEPCRHKLLDFVGDLSLFARNGSQGLPVAHMVAFKGGHALH 284
            DE  RHK+LD +GDL +   N      +    A+K GHAL+
Sbjct: 232 EDEFVRHKMLDAIGDLFMCGHN-----IIGAFTAYKSGHALN 268

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	295
3p3c_A	274	UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine d	1e-90
3uhm_A	299	UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine d	7e-88
3p3g_A	300	UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine d	8e-85

>3p3c_A UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase; lipid A biosynthesis, lipid A synthesis, LPXC, BAAB sandwich hydrolase; HET: 3P3; 1.25A {Aquifex aeolicus} PDB: 1xxe_A* 2jt2_A* 1p42_A* 1yh8_A* 1yhc_A* 3p76_A* 2ies_A* 2ier_A* 2o3z_A* 2j65_A* 2go3_A* 2go4_A* Length = 274

 Score =  269 bits (690), Expect = 1e-90
 Identities = 87/284 (30%), Positives = 132/284 (46%), Gaps = 39/284 (13%)

Query: 24  LQQTLAGFIEKTGKTLHSGNVSTVRLCPEFAGKGRYFEFRSRL-IPASIDFAKESPLCTT 82
           L++T+   +   G  +H+G  S + + PE  G G  F  ++ + IPA  +F   +   T 
Sbjct: 2   LEKTVKEKLSFEGVGIHTGEYSKLIIHPEKEGTGIRFF-KNGVYIPARHEFVVHTNHSTD 60

Query: 83  LFKDGVQIRTVEHLLSALEAKGVDNCKIEIHNMVADDQDVEAEVPIFDGSASAWAEAIEQ 142
           L   G +I+TVEH+LS L    + N  IE+            E+PI DGS   + EAI +
Sbjct: 61  LGFKGQRIKTVEHILSVLHLLEITNVTIEVIG---------NEIPILDGSGWEFYEAIRK 111

Query: 143 VGL----KRPWIR---------EDSFVAAFPSQKVQISYGIDFPQVPAIGCQWFSTTPLE 189
             L    +  +           E   + A PS  ++++Y  +F     +G Q F+     
Sbjct: 112 NILNQNREIDYFVVEEPIIVEDEGRLIKAEPSDTLEVTYEGEFK--NFLGRQKFTFV--- 166

Query: 190 GTCYAMHIASSRTFCIYEEVERMCNAGLIKGGSLDNAIVCSASEGWLNP-PLRFPDEPCR 248
                  I  +RTF    E+E +   GL KGGSL N +V    +   NP  LR+ +EP R
Sbjct: 167 -EGNEEEIVLARTFAFDWEIEHIKKVGLGKGGSLKNTLVLG-KDKVYNPEGLRYENEPVR 224

Query: 249 HKLLDFVGDLSLFARNGSQGLPV-AHMVAFKGGHALHVDFARRL 291
           HK+ D +GDL L       G PV     +F+GGH+L+V   + L
Sbjct: 225 HKVFDLIGDLYLL------GSPVKGKFYSFRGGHSLNVKLVKEL 262

>3uhm_A UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase; amidohydrolases, anti-bacterial agents, bacteria, catalytic drug design; HET: RFN; 1.26A {Pseudomonas aeruginosa} PDB: 2ves_A* 3u1y_A* 3p3e_A* Length = 299

 Score =  263 bits (675), Expect = 7e-88
 Identities = 92/289 (31%), Positives = 131/289 (45%), Gaps = 40/289 (13%)

Query: 25  QQTLAGFIEKTGKTLHSGNVSTVRLCPEFAGKGRYFEFR-----SRLIPASIDFAKESPL 79
           Q+TL   I  TG  LHSG    + L P     G  F  R        IPA  +   E+ +
Sbjct: 4   QRTLKNIIRATGVGLHSGEKVYLTLKPAPVDTGIVFS-RTDLDPVVEIPARAENVGETTM 62

Query: 80  CTTLFKDGVQIRTVEHLLSALEAKGVDNCKIEIHNMVADDQDVEAEVPIFDGSASAWAEA 139
            TTL K  V++ TVEHLLSA+   G+DN  +E+           +EVPI DGSA  +   
Sbjct: 63  STTLVKGDVKVDTVEHLLSAMAGLGIDNAYVELSA---------SEVPIMDGSAGPFVFL 113

Query: 140 IEQVGLK-----RPWIR---------EDSFVAAFPSQKVQISYGIDFPQVPAIGCQW-FS 184
           I+  GL+     + +IR          D      P    ++S+ IDF   P    +   +
Sbjct: 114 IQSAGLQEQEAAKKFIRIKREVSVEEGDKRAVFVPFDGFKVSFEIDFDH-PVFRGRTQQA 172

Query: 185 TTPLEGTCYAMHIASSRTFCIYEEVERMCNAGLIKGGSLDNAIVCSASEGWLNP-PLRFP 243
           +     T +   ++ +RTF    ++E + +  L  GGS++NAIV       LN   LR+ 
Sbjct: 173 SVDFSSTSFVKEVSRARTFGFMRDIEYLRSQNLALGGSVENAIVVD-ENRVLNEDGLRYE 231

Query: 244 DEPCRHKLLDFVGDLSLFARNGSQGLPV-AHMVAFKGGHALHVDFARRL 291
           DE  +HK+LD +GDL L       G  +      FK GHAL+    R L
Sbjct: 232 DEFVKHKILDAIGDLYLL------GNSLIGEFRGFKSGHALNNQLLRTL 274

>3p3g_A UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase; lipid A biosynthesis, lipid A synthesis, LPXC, BAAB sandwich hydrolase; HET: 3P3 UKW; 1.65A {Escherichia coli} PDB: 3ps1_A* 3ps2_A* 3ps3_A* 3nzk_A* Length = 300

 Score =  255 bits (654), Expect = 8e-85
 Identities = 88/291 (30%), Positives = 132/291 (45%), Gaps = 43/291 (14%)

Query: 25  QQTLAGFIEKTGKTLHSGNVSTVRLCPEFAGKGRYFEFRS-----RLIPASIDFAKESPL 79
           Q+TL   ++ TG  LH+G   T+ L P  A  G  +  R+        PA     +++ L
Sbjct: 4   QRTLKRIVQATGVGLHTGKKVTLTLRPAPANTGVIYR-RTDLNPPVDFPADAKSVRDTML 62

Query: 80  CTTLF-KDGVQIRTVEHLLSALEAKGVDNCKIEIHNMVADDQDVEAEVPIFDGSASAWAE 138
           CT L  +  V+I TVEHL +AL   G+DN  IE++           E+PI DGSA+ +  
Sbjct: 63  CTCLVNEHDVRISTVEHLNAALAGLGIDNIVIEVNA---------PEIPIMDGSAAPFVY 113

Query: 139 AIEQVGLK-----RPWIR---------EDSFVAAFPSQKVQISYGIDFPQVPAI--GCQW 182
            +   G+      + ++R          D +    P     + + IDF   PAI    Q 
Sbjct: 114 LLLDAGIDELNCAKKFVRIKETVRVEDGDKWAEFKPYNGFSLDFTIDFNH-PAIDSSNQR 172

Query: 183 FSTTPLEGTCYAMHIASSRTFCIYEEVERMCNAGLIKGGSLDNAIVCSASEGWLNP-PLR 241
           ++        +   I+ +RTF    ++E + + GL  GGS D AIV       LN   LR
Sbjct: 173 YAMNFSADA-FMRQISRARTFGFMRDIEYLQSRGLCLGGSFDCAIVVD-DYRVLNEDGLR 230

Query: 242 FPDEPCRHKLLDFVGDLSLFARNGSQGLPV-AHMVAFKGGHALHVDFARRL 291
           F DE  RHK+LD +GDL +       G  +     A+K GHAL+    + +
Sbjct: 231 FEDEFVRHKMLDAIGDLFMC------GHNIIGAFTAYKSGHALNNKLLQAV 275

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	295
3p3g_A	300	UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine d	100.0
3uhm_A	299	UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine d	100.0
3p3c_A	274	UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine d	100.0

>3p3g_A UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase; lipid A biosynthesis, lipid A synthesis, LPXC, BAAB sandwich hydrolase; HET: 3P3 UKW; 1.65A {Escherichia coli} PDB: 3ps1_A* 3ps2_A* 3ps3_A* 3nzk_A*

Probab=100.00  E-value=1.4e-101  Score=725.91  Aligned_cols=255  Identities=34%  Similarity=0.522  Sum_probs=240.7

Q ss_pred             cccccccceeEEEEEEeecCCeEEEEEeecCCCCeEEEEc----cCceeecccccccccceeeeeecC-CeEEEeHHHHH
Q 042138           23 RLQQTLAGFIEKTGKTLHSGNVSTVRLCPEFAGKGRYFEF----RSRLIPASIDFAKESPLCTTLFKD-GVQIRTVEHLL   97 (295)
Q Consensus        23 ~~Q~Tl~~~v~~~GiGLHsG~~v~v~l~PA~~~tGi~F~~----~~~~Ipa~~~~v~~t~~~T~L~~~-~~~V~TVEHLl   97 (295)
                      ++|+||+++|+++|+|||||++|+|||+|||+|+||+|.+    +.+.|||.+++|.+|+|||+|+++ +++|+||||||
T Consensus         2 ~~Q~Tl~~~v~~~GiGLHsG~~v~ltl~PA~~~tGi~F~R~Dl~~~~~I~A~~~~V~~T~l~T~L~~~~g~~V~TVEHll   81 (300)
T 3p3g_A            2 IKQRTLKRIVQATGVGLHTGKKVTLTLRPAPANTGVIYRRTDLNPPVDFPADAKSVRDTMLCTCLVNEHDVRISTVEHLN   81 (300)
T ss_dssp             CEEEEESSCEEEEEECTTTCSEEEEEEECCCTTCCEEEEECSSSSCEEEECCGGGEECCSSSCEEECTTCCEEECCHHHH
T ss_pred             CCccccCCeEEEEEEEeccCcEEEEEEEeCCCCCCEEEEEccCCCCceEeeeHHHcccccceeEeecCCCcEEEEHHHHH
Confidence            4599999999999999999999999999999999999954    347899999999999999999988 89999999999


Q ss_pred             HHHhhCCCceEEEEEeecccCCCCCCCCcccccCChHHHHHHHHHcCce------------eeE--EeCCeEEEEeeCCC
Q 042138           98 SALEAKGVDNCKIEIHNMVADDQDVEAEVPIFDGSASAWAEAIEQVGLK------------RPW--IREDSFVAAFPSQK  163 (295)
Q Consensus        98 AAL~glgIDN~~Iei~~~~~~~~~~g~EvPIlDGSA~~f~~~i~~aGi~------------~~~--~~~~~~i~~~P~~~  163 (295)
                      |||+|||||||+|||         +|+|+|||||||.||+++|++||++            +|+  .++++|+.++|+++
T Consensus        82 AAL~g~gIDN~~Iev---------dg~EvPImDGSA~~fv~~i~~aGi~eq~a~r~~~~i~~~v~v~~g~~~~~~~P~~~  152 (300)
T 3p3g_A           82 AALAGLGIDNIVIEV---------NAPEIPIMDGSAAPFVYLLLDAGIDELNCAKKFVRIKETVRVEDGDKWAEFKPYNG  152 (300)
T ss_dssp             HHHHHHTCCSEEEEE---------SSSBCCCTTSSSHHHHHHHHHHCEEEEEEECCEEEECSCEEEEETTEEEEEECCSS
T ss_pred             HHHHhCCCceEEEEE---------cCCCCCccCCchHHHHHHHHHcCCeecCCcccEEEeCcEEEEEECCEEEEEEeCCC
Confidence            999999999999999         4999999999999999999999997            122  18899999999999


Q ss_pred             eEEEEEEeCCCCCCcce--eeeeeccCChhhHHHhccCCCccccHHHHHHHHHcCcccccCCcceEEecCCCcccCC-CC
Q 042138          164 VQISYGIDFPQVPAIGC--QWFSTTPLEGTCYAMHIASSRTFCIYEEVERMCNAGLIKGGSLDNAIVCSASEGWLNP-PL  240 (295)
Q Consensus       164 l~it~~Idf~~~~~Ig~--Q~~~~~~~~~~~f~~eIA~ARTFgf~~eve~L~~~GLa~GgSldNaiVi~~~~g~lN~-~L  240 (295)
                      |+|+|+|||+ ||+||+  |+++ +++++++|.+|||+||||||++|+|+|+++||++|||||||||++ +++|||+ +|
T Consensus       153 ~~i~~~IdF~-~p~Ig~~~Q~~~-~~~~~~~f~~eIa~ARTFgf~~eve~L~~~GLa~GGsLdNAiVi~-~~~vlN~~gL  229 (300)
T 3p3g_A          153 FSLDFTIDFN-HPAIDSSNQRYA-MNFSADAFMRQISRARTFGFMRDIEYLQSRGLCLGGSFDCAIVVD-DYRVLNEDGL  229 (300)
T ss_dssp             EEEEEECCCC-CTTSCGGGSEEE-EECCHHHHHHHTTTCCCEEEHHHHHHHHHTTCSTTCCTTTCEEEC-SSSBCSTTCC
T ss_pred             cEEEEEEECC-CcccCCcccEEE-EecCHHHHHHhCCCccccccHHHHHHHHHCCcccccCccceEEEc-CCcccCCCCC
Confidence            9999999998 899999  9999 889999999999999999999999999999999999999999997 5899997 79


Q ss_pred             CCCCCcchhhhhhhHhhhhcccccCCCCcceEEEEEEecChHHHHHHHHHHhhc
Q 042138          241 RFPDEPCRHKLLDFVGDLSLFARNGSQGLPVAHMVAFKGGHALHVDFARRLSGV  294 (295)
Q Consensus       241 Rf~dE~vRHKiLDlIGDL~Llg~~~~~G~~~G~i~a~k~GH~ln~~l~~~L~~~  294 (295)
                      ||+||||||||||+||||||+|+|     ++|||+|||+||++|++|+|+|+++
T Consensus       230 Rf~dE~VRHKiLD~IGDLaL~G~p-----i~G~~~a~k~GH~ln~~l~r~L~~~  278 (300)
T 3p3g_A          230 RFEDEFVRHKMLDAIGDLFMCGHN-----IIGAFTAYKSGHALNNKLLQAVLAK  278 (300)
T ss_dssp             SSTTHHHHHHHHHHHHHHGGGSSC-----EEEEEEEESCCHHHHHHHHHHHHHC
T ss_pred             cCCCchhhHHHHHHHHHHHhcCCC-----eEEEEEEEcCChHHHHHHHHHHHhC
Confidence            999999999999999999999753     5799999999999999999999875

>3uhm_A UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase; amidohydrolases, anti-bacterial agents, bacteria, catalytic drug design; HET: RFN; 1.26A {Pseudomonas aeruginosa} PDB: 2ves_A* 3u1y_A* 3p3e_A*

Probab=100.00  E-value=9.6e-102  Score=726.79  Aligned_cols=255  Identities=36%  Similarity=0.518  Sum_probs=241.0

Q ss_pred             cccccccceeEEEEEEeecCCeEEEEEeecCCCCeEEEEc----cCceeecccccccccceeeeeecCCeEEEeHHHHHH
Q 042138           23 RLQQTLAGFIEKTGKTLHSGNVSTVRLCPEFAGKGRYFEF----RSRLIPASIDFAKESPLCTTLFKDGVQIRTVEHLLS   98 (295)
Q Consensus        23 ~~Q~Tl~~~v~~~GiGLHsG~~v~v~l~PA~~~tGi~F~~----~~~~Ipa~~~~v~~t~~~T~L~~~~~~V~TVEHLlA   98 (295)
                      ++|+||+++|+++|+|||||++|+|||+|||+|+||+|.+    +.+.|||.+++|.+|+|||+|+++|++|+|||||||
T Consensus         2 ~~Q~Tl~~~v~~~GiGLHsG~~v~ltl~PA~~~tGi~F~R~Dl~~~~~I~A~~~~V~~T~l~T~L~~~g~~V~TVEHllA   81 (299)
T 3uhm_A            2 IKQRTLKNIIRATGVGLHSGEKVYLTLKPAPVDTGIVFSRTDLDPVVEIPARAENVGETTMSTTLVKGDVKVDTVEHLLS   81 (299)
T ss_dssp             CEEEEESSCEEEEEEBTTTCCEEEEEEECCCTTCCEEEEETTSSSCEEEECCGGGEEECSSSCEEEETTEEEBCCHHHHH
T ss_pred             CCccccCCeEEEEEEEeccCcEEEEEEEeCCCCCCEEEEEccCCCCceEeeeHHHcccccceeEEccCCEEEEEHHHHHH
Confidence            4599999999999999999999999999999999999964    347899999999999999999999999999999999


Q ss_pred             HHhhCCCceEEEEEeecccCCCCCCCCcccccCChHHHHHHHHHcCce------------eeE--EeCCeEEEEeeCCCe
Q 042138           99 ALEAKGVDNCKIEIHNMVADDQDVEAEVPIFDGSASAWAEAIEQVGLK------------RPW--IREDSFVAAFPSQKV  164 (295)
Q Consensus        99 AL~glgIDN~~Iei~~~~~~~~~~g~EvPIlDGSA~~f~~~i~~aGi~------------~~~--~~~~~~i~~~P~~~l  164 (295)
                      ||+|||||||+|||         +|+|+|||||||.||+++|++||++            +|+  .++++|+.++|+++|
T Consensus        82 AL~g~gIDN~~Iev---------dg~EvPImDGSA~~fv~~i~~aGi~eq~a~r~~~~i~~~v~v~~g~~~~~~~P~~~~  152 (299)
T 3uhm_A           82 AMAGLGIDNAYVEL---------SASEVPIMDGSAGPFVFLIQSAGLQEQEAAKKFIRIKREVSVEEGDKRAVFVPFDGF  152 (299)
T ss_dssp             HHHHTTCCCEEEEE---------SSSBCBCTTSSSHHHHHHHHHHCEEEEEEECCEEEECSCEEEEETTEEEEEECCSSE
T ss_pred             HHHhCCCceEEEEE---------cCCCCCccCCchHHHHHHHHHcCCeecCCcccEEEECcEEEEEECCEEEEEEeCCCc
Confidence            99999999999999         4999999999999999999999997            122  188999999999999


Q ss_pred             EEEEEEeCCCCCCcce--eeeeeccCChhhHHHhccCCCccccHHHHHHHHHcCcccccCCcceEEecCCCcccCC-CCC
Q 042138          165 QISYGIDFPQVPAIGC--QWFSTTPLEGTCYAMHIASSRTFCIYEEVERMCNAGLIKGGSLDNAIVCSASEGWLNP-PLR  241 (295)
Q Consensus       165 ~it~~Idf~~~~~Ig~--Q~~~~~~~~~~~f~~eIA~ARTFgf~~eve~L~~~GLa~GgSldNaiVi~~~~g~lN~-~LR  241 (295)
                      +|+|+|||+ ||+||+  |+++ +++++++|.+|||+||||||++|+|+|+++||++|||||||||++ +++|||+ +||
T Consensus       153 ~i~~~IdF~-~p~Ig~~~Q~~~-~~~~~~~f~~eIa~ARTFgf~~eve~L~~~GLa~GGsLdNAiVi~-~~~vlN~~gLR  229 (299)
T 3uhm_A          153 KVSFEIDFD-HPVFRGRTQQAS-VDFSSTSFVKEVSRARTFGFMRDIEYLRSQNLALGGSVENAIVVD-ENRVLNEDGLR  229 (299)
T ss_dssp             EEEEEECCC-SGGGTTCCEEEE-EECCHHHHHHHTTTCCCEEEGGGHHHHHHHTCCTTCSTTTSEEEC-SSSBCCTTCCS
T ss_pred             EEEEEEECC-CccCCCcccEEE-EEeCHHHHHHhCCCccccccHHHHHHHHHCCcccccCccceEEEc-CCcccCCCCcc
Confidence            999999998 899999  9999 889999999999999999999999999999999999999999997 5899997 799


Q ss_pred             CCCCcchhhhhhhHhhhhcccccCCCCcceEEEEEEecChHHHHHHHHHHhhc
Q 042138          242 FPDEPCRHKLLDFVGDLSLFARNGSQGLPVAHMVAFKGGHALHVDFARRLSGV  294 (295)
Q Consensus       242 f~dE~vRHKiLDlIGDL~Llg~~~~~G~~~G~i~a~k~GH~ln~~l~~~L~~~  294 (295)
                      |+||||||||||+||||||+|+|     ++|||+|||+||++|++|+|+|+++
T Consensus       230 f~dE~VRHKiLD~IGDLaL~G~p-----i~G~~~a~k~GH~ln~~l~r~L~~~  277 (299)
T 3uhm_A          230 YEDEFVKHKILDAIGDLYLLGNS-----LIGEFRGFKSGHALNNQLLRTLIAD  277 (299)
T ss_dssp             STTHHHHHHHHHHHHHHHTTSSE-----EEEEEEEESCCHHHHHHHHHHHHHC
T ss_pred             CCCchhhHHHHHHHHHHHhcCCC-----ceEEEEEECCChHHHHHHHHHHHhC
Confidence            99999999999999999999753     5799999999999999999999874

>3p3c_A UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase; lipid A biosynthesis, lipid A synthesis, LPXC, BAAB sandwich hydrolase; HET: 3P3; 1.25A {Aquifex aeolicus} PDB: 1xxe_A* 2jt2_A* 1p42_A* 1yh8_A* 1yhc_A* 3p76_A* 2ies_A* 2ier_A* 2o3z_A* 2j65_A* 2go3_A* 2go4_A*

Probab=100.00  E-value=4.7e-101  Score=714.83  Aligned_cols=249  Identities=34%  Similarity=0.526  Sum_probs=236.3

Q ss_pred             ccccccceeEEEEEEeecCCeEEEEEeecCCCCeEEEEccCceeecccccccccceeeeeecCCeEEEeHHHHHHHHhhC
Q 042138           24 LQQTLAGFIEKTGKTLHSGNVSTVRLCPEFAGKGRYFEFRSRLIPASIDFAKESPLCTTLFKDGVQIRTVEHLLSALEAK  103 (295)
Q Consensus        24 ~Q~Tl~~~v~~~GiGLHsG~~v~v~l~PA~~~tGi~F~~~~~~Ipa~~~~v~~t~~~T~L~~~~~~V~TVEHLlAAL~gl  103 (295)
                      +|+||+++|+++|+|||||++|+|||+|||+|+||+|.++.+.|||.+++|.+|++||+|++++++|+|||||||||+||
T Consensus         2 ~Q~Tl~~~v~~~GiGLHsG~~v~ltl~PA~~~tGi~F~R~~~~I~A~~~~V~~t~l~T~L~~~g~~V~TVEHllAAL~g~   81 (274)
T 3p3c_A            2 LEKTVKEKLSFEGVGIHTGEYSKLIIHPEKEGTGIRFFKNGVYIPARHEFVVHTNHSTDLGFKGQRIKTVEHILSVLHLL   81 (274)
T ss_dssp             EEEEESSCEEEEEECTTTCCEEEEEEEECCTTCCEEEEETTEEEESSGGGEEECSSSCEEEETTEEEBCCHHHHHHHHHH
T ss_pred             CccccCCcEEEEEEEeccCcEEEEEEEeCCCCCCEEEEeCCceEeccHHHeeeecceeEEccCCEEEEeHHHHHHHHHhC
Confidence            59999999999999999999999999999999999998766889999999999999999999999999999999999999


Q ss_pred             CCceEEEEEeecccCCCCCCCCcccccCChHHHHHHHHHcCce------------eeE--EeCCeEEEEeeCCCeEEEEE
Q 042138          104 GVDNCKIEIHNMVADDQDVEAEVPIFDGSASAWAEAIEQVGLK------------RPW--IREDSFVAAFPSQKVQISYG  169 (295)
Q Consensus       104 gIDN~~Iei~~~~~~~~~~g~EvPIlDGSA~~f~~~i~~aGi~------------~~~--~~~~~~i~~~P~~~l~it~~  169 (295)
                      |||||+||||         |+|+|||||||.||+++|++ |++            +|+  .++++|+.++|+++|+|+|+
T Consensus        82 gIDN~~Ievd---------g~EvPImDGSA~~fv~~i~~-Gi~eq~a~r~~~~i~~~v~v~~g~~~i~~~P~~~~~i~~~  151 (274)
T 3p3c_A           82 EITNVTIEVI---------GNEIPILDGSGWEFYEAIRK-NILNQNREIDYFVVEEPIIVEDEGRLIKAEPSDTLEVTYE  151 (274)
T ss_dssp             TCCSEEEEEE---------SSBCCCTTSSSHHHHHHHHT-TEEEEEEECCCEECCSCEEEEETTEEEEEECCSSCEEEEE
T ss_pred             CCceEEEEEc---------CCCCCccCCchHHHHHHHHh-hhhhccCccceEEeccEEEEEeCCEEEEEEeCCCcEEEEE
Confidence            9999999995         99999999999999999999 997            222  18899999999999999999


Q ss_pred             EeCCCCCCcceeeeeeccCChhhHHHhccCCCccccHHHHHHHHHcCcccccCCcceEEecCCCcccCC-CCCCCCCcch
Q 042138          170 IDFPQVPAIGCQWFSTTPLEGTCYAMHIASSRTFCIYEEVERMCNAGLIKGGSLDNAIVCSASEGWLNP-PLRFPDEPCR  248 (295)
Q Consensus       170 Idf~~~~~Ig~Q~~~~~~~~~~~f~~eIA~ARTFgf~~eve~L~~~GLa~GgSldNaiVi~~~~g~lN~-~LRf~dE~vR  248 (295)
                      |||+ | +||+|+++ ++   ++|.+|||+||||||++|+|+|+++||++|||||||||++ +++|||+ +|||+|||||
T Consensus       152 IdF~-~-~Ig~Q~~~-~~---~~f~~eIa~ARTFgf~~eve~L~~~GLa~GGsLdNAiV~~-~~~vlN~~gLR~~dE~vR  224 (274)
T 3p3c_A          152 GEFK-N-FLGRQKFT-FV---EGNEEEIVLARTFAFDWEIEHIKKVGLGKGGSLKNTLVLG-KDKVYNPEGLRYENEPVR  224 (274)
T ss_dssp             EECS-S-TTCEEEEE-EE---TTCGGGTTTCCCEEEHHHHHHHHHTTCCTTCCTTTCEEEC-SSCBCSTTCCSSTTHHHH
T ss_pred             EECC-c-ccceEEEe-ee---hhHHhhcccccccccHHHHHHHHHCCcccccCcccEEEEc-CCcccCCCCCcCCCchhh
Confidence            9998 8 99999999 65   8999999999999999999999999999999999999997 5899998 7999999999


Q ss_pred             hhhhhhHhhhhcccccCCCCcceEEEEEEecChHHHHHHHHHHhhc
Q 042138          249 HKLLDFVGDLSLFARNGSQGLPVAHMVAFKGGHALHVDFARRLSGV  294 (295)
Q Consensus       249 HKiLDlIGDL~Llg~~~~~G~~~G~i~a~k~GH~ln~~l~~~L~~~  294 (295)
                      |||||+||||||+|+|     ++|||+|||+||++|++|+|+|+++
T Consensus       225 HKiLD~IGDL~L~G~p-----i~g~~~a~k~GH~ln~~l~~~L~~~  265 (274)
T 3p3c_A          225 HKVFDLIGDLYLLGSP-----VKGKFYSFRGGHSLNVKLVKELAKK  265 (274)
T ss_dssp             HHHHHHHHHHGGGSSC-----EECEEEEESCCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhcCCC-----ceEEEEEEcCchHHHHHHHHHHHhC
Confidence            9999999999999763     5799999999999999999999864

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	295
d1p42a2	147	d.14.1.7 (A:128-280) UDP-3-O-[3-hydroxymyristoyl]	4e-28
d1p42a1	120	d.14.1.7 (A:2-127) UDP-3-O-[3-hydroxymyristoyl] N-	6e-27

>d1p42a2 d.14.1.7 (A:128-280) UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase LpxC {Aquifex aeolicus [TaxId: 63363]} Length = 147

class: Alpha and beta proteins (a+b)
fold: Ribosomal protein S5 domain 2-like
superfamily: Ribosomal protein S5 domain 2-like
family: UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase LpxC
domain: UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase LpxC
species: Aquifex aeolicus [TaxId: 63363]

 Score =  103 bits (259), Expect = 4e-28
 Identities = 43/140 (30%), Positives = 66/140 (47%), Gaps = 11/140 (7%)

Query: 152 EDSFVAAFPSQKVQISYGIDFPQVPAIGCQWFSTTPLEGTCYAMHIASSRTFCIYEEVER 211
           E   + A PS  ++++Y  +F     +G Q F+            I  +RTF    E+E 
Sbjct: 14  EGRLIKAEPSDTLEVTYEGEFK--NFLGRQKFTFVEG----NEEEIVLARTFAFDWEIEH 67

Query: 212 MCNAGLIKGGSLDNAIVCSASEGWLNPPLRFPDEPCRHKLLDFVGDLSLFARNGSQGLPV 271
           +   GL KGGSL N +V    + +    LR+ +EP RHK+ D +GDL L           
Sbjct: 68  IKKVGLGKGGSLKNTLVLGKDKVYNPEGLRYENEPVRHKVFDLIGDLYLLGSP-----VK 122

Query: 272 AHMVAFKGGHALHVDFARRL 291
               +F+GGH+L+V   + L
Sbjct: 123 GKFYSFRGGHSLNVKLVKEL 142

>d1p42a1 d.14.1.7 (A:2-127) UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase LpxC {Aquifex aeolicus [TaxId: 63363]} Length = 120

class: Alpha and beta proteins (a+b)
fold: Ribosomal protein S5 domain 2-like
superfamily: Ribosomal protein S5 domain 2-like
family: UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase LpxC
domain: UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase LpxC
species: Aquifex aeolicus [TaxId: 63363]

 Score =   99 bits (249), Expect = 6e-27
 Identities = 39/123 (31%), Positives = 57/123 (46%), Gaps = 9/123 (7%)

Query: 24  LQQTLAGFIEKTGKTLHSGNVSTVRLCPEFAGKGRYFEFRSRLIPASIDFAKESPLCTTL 83
           L++T+   +   G  +H+G  S + + PE  G G  F      IPA  +F   +   T L
Sbjct: 2   LEKTVKEKLSFEGVGIHTGEYSKLIIHPEKEGTGIRFFKNGVYIPARHEFVVHTNHSTDL 61

Query: 84  FKDGVQIRTVEHLLSALEAKGVDNCKIEIHNMVADDQDVEAEVPIFDGSASAWAEAIEQV 143
              G +I+TVEH+LS L    + N  IE+            E+PI DGS   + EAI + 
Sbjct: 62  GFKGQRIKTVEHILSVLHLLEITNVTIEVIG---------NEIPILDGSGWEFYEAIRKN 112

Query: 144 GLK 146
            L 
Sbjct: 113 ILN 115

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	295
d1p42a2	147	UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine d	100.0
d1p42a1	120	UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine d	100.0
d2bv3a3	121	Elongation factor G (EF-G), domain IV {Thermus the	91.95

>d1p42a2 d.14.1.7 (A:128-280) UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase LpxC {Aquifex aeolicus [TaxId: 63363]}

class: Alpha and beta proteins (a+b)
fold: Ribosomal protein S5 domain 2-like
superfamily: Ribosomal protein S5 domain 2-like
family: UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase LpxC
domain: UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase LpxC
species: Aquifex aeolicus [TaxId: 63363]

Probab=100.00  E-value=2.9e-53  Score=361.41  Aligned_cols=132  Identities=34%  Similarity=0.576  Sum_probs=123.3

Q ss_pred             eCCeEEEEeeCCCeEEEEEEeCCCCCCcceeeeeeccCChhhHHHhccCCCccccHHHHHHHHHcCcccccCCcceEEec
Q 042138          151 REDSFVAAFPSQKVQISYGIDFPQVPAIGCQWFSTTPLEGTCYAMHIASSRTFCIYEEVERMCNAGLIKGGSLDNAIVCS  230 (295)
Q Consensus       151 ~~~~~i~~~P~~~l~it~~Idf~~~~~Ig~Q~~~~~~~~~~~f~~eIA~ARTFgf~~eve~L~~~GLa~GgSldNaiVi~  230 (295)
                      ++++|+.+.|+++|+|+|+|||+ + +||+|+++ +.   ++|.+||||||||||++|+++|+++||+|||||+||||++
T Consensus        13 ~g~~~i~i~P~~~~~It~~Idf~-~-~Ig~Q~~~-~~---~~f~~eIa~ARTFgf~~eie~L~~~Gl~~Ggsl~naiVi~   86 (147)
T d1p42a2          13 DEGRLIKAEPSDTLEVTYEGEFK-N-FLGRQKFT-FV---EGNEEEIVLARTFAFDWEIEHIKKVGLGKGGSLKNTLVLG   86 (147)
T ss_dssp             ETTEEEEEECCSSCEEEEEEECS-S-TTCEEEEE-EE---TTCGGGTTTCCCEEEHHHHHHHHHTTCCTTCCTTTCEEEC
T ss_pred             ECCEEEEEEcCCCcEEEEEEEcC-C-CCcceeeE-ee---cCCHHHhhchhhhHHHHHHHHHhccCccCCcccccceeec
Confidence            88999999999999999999998 5 59999999 53   4688999999999999999999999999999999999997


Q ss_pred             CCCcccCC-CCCCCCCcchhhhhhhHhhhhcccccCCCCcceEEEEEEecChHHHHHHHHHHhhc
Q 042138          231 ASEGWLNP-PLRFPDEPCRHKLLDFVGDLSLFARNGSQGLPVAHMVAFKGGHALHVDFARRLSGV  294 (295)
Q Consensus       231 ~~~g~lN~-~LRf~dE~vRHKiLDlIGDL~Llg~~~~~G~~~G~i~a~k~GH~ln~~l~~~L~~~  294 (295)
                       +++++|+ +|||+||||||||||+||||||+|+|     ++|||+|+|+||.+|++|+|+|+++
T Consensus        87 -~~~~~n~~~LR~~~E~vRHKiLD~iGDl~L~G~p-----i~G~i~a~k~GH~ln~~l~~~l~~~  145 (147)
T d1p42a2          87 -KDKVYNPEGLRYENEPVRHKVFDLIGDLYLLGSP-----VKGKFYSFRGGHSLNVKLVKELAKK  145 (147)
T ss_dssp             -SSCBCSTTCCSSTTHHHHHHHHHHHHHHGGGSSC-----EECEEEEESCCHHHHHHHHHHHHHT
T ss_pred             -ccceecccccccccccchhhhhhhcccHhhcCCC-----eEEEEEEEcCCHHHHHHHHHHHHhc
Confidence             5899986 79999999999999999999999753     5799999999999999999999876

>d1p42a1 d.14.1.7 (A:2-127) UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase LpxC {Aquifex aeolicus [TaxId: 63363]}

class: Alpha and beta proteins (a+b)
fold: Ribosomal protein S5 domain 2-like
superfamily: Ribosomal protein S5 domain 2-like
family: UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase LpxC
domain: UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase LpxC
species: Aquifex aeolicus [TaxId: 63363]

Probab=100.00  E-value=1e-47  Score=317.47  Aligned_cols=114  Identities=34%  Similarity=0.463  Sum_probs=110.5

Q ss_pred             ccccccceeEEEEEEeecCCeEEEEEeecCCCCeEEEEccCceeecccccccccceeeeeecCCeEEEeHHHHHHHHhhC
Q 042138           24 LQQTLAGFIEKTGKTLHSGNVSTVRLCPEFAGKGRYFEFRSRLIPASIDFAKESPLCTTLFKDGVQIRTVEHLLSALEAK  103 (295)
Q Consensus        24 ~Q~Tl~~~v~~~GiGLHsG~~v~v~l~PA~~~tGi~F~~~~~~Ipa~~~~v~~t~~~T~L~~~~~~V~TVEHLlAAL~gl  103 (295)
                      +|+||+++++++|+|||||++++|+|+||++|+||+|.+....|||.+++|.+|.+||+|++++.+|+|||||||||++|
T Consensus         2 ~Q~Ti~~~v~~~GiGLHsG~~~~v~l~PA~~~~GI~F~r~d~~I~a~~~~v~~t~~~T~l~~~~~~V~TvEHLlaAl~gl   81 (120)
T d1p42a1           2 LEKTVKEKLSFEGVGIHTGEYSKLIIHPEKEGTGIRFFKNGVYIPARHEFVVHTNHSTDLGFKGQRIKTVEHILSVLHLL   81 (120)
T ss_dssp             EEEEESSCEEEEEECTTTCCEEEEEEEECCTTCCEEEEETTEEEESSGGGEEECSSSCEEEETTEEEBCCHHHHHHHHHT
T ss_pred             CCcccCCcEEEEEEEccCCcEEEEEEEeCCCCcEEEEEeCCccCccchhhhhhhhhhhhhccCceEEEEhHHHHHHHHhc
Confidence            69999999999999999999999999999999999998766789999999999999999999999999999999999999


Q ss_pred             CCceEEEEEeecccCCCCCCCCcccccCChHHHHHHHHHcCce
Q 042138          104 GVDNCKIEIHNMVADDQDVEAEVPIFDGSASAWAEAIEQVGLK  146 (295)
Q Consensus       104 gIDN~~Iei~~~~~~~~~~g~EvPIlDGSA~~f~~~i~~aGi~  146 (295)
                      ||||++||||         |+|+|||||||.+|+++|+++|++
T Consensus        82 gIDN~~Ield---------g~EvPIlDGSa~~fv~~i~~agi~  115 (120)
T d1p42a1          82 EITNVTIEVI---------GNEIPILDGSGWEFYEAIRKNILN  115 (120)
T ss_dssp             TCCSEEEEEE---------SSBCCCTTSSSHHHHHHHHTTEEE
T ss_pred             CcceEEEEeC---------CCcCCccCCchHHHHHHHHHhChh
Confidence            9999999995         999999999999999999999986

>d2bv3a3 d.14.1.1 (A:479-599) Elongation factor G (EF-G), domain IV {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a+b)
fold: Ribosomal protein S5 domain 2-like
superfamily: Ribosomal protein S5 domain 2-like
family: Translational machinery components
domain: Elongation factor G (EF-G), domain IV
species: Thermus thermophilus [TaxId: 274]

Probab=91.95  E-value=0.06  Score=42.01  Aligned_cols=76  Identities=17%  Similarity=0.172  Sum_probs=49.4

Q ss_pred             ccccccceeEEEEEEeec----CC----eEEEEEeecCCCCeEEEEc--cCceeecccccccccceeeeeecCCeEEEeH
Q 042138           24 LQQTLAGFIEKTGKTLHS----GN----VSTVRLCPEFAGKGRYFEF--RSRLIPASIDFAKESPLCTTLFKDGVQIRTV   93 (295)
Q Consensus        24 ~Q~Tl~~~v~~~GiGLHs----G~----~v~v~l~PA~~~tGi~F~~--~~~~Ipa~~~~v~~t~~~T~L~~~~~~V~TV   93 (295)
                      ++-||.++++..+  .|-    |+    .|++++.|.+.++|+.|..  ....||..+-..+.....-.+..|       
T Consensus         5 YREtI~~~~~~~~--~~~rq~gg~~~~a~V~l~veP~~~g~g~~f~~~v~~~~ip~~~~~ave~g~~~a~~~G-------   75 (121)
T d2bv3a3           5 YRETITKPVDVEG--KFIRQTGGRGQYGHVKIKVEPLPRGSGFEFVNAIVGGVIPKEYIPAVQKGIEEAMQSG-------   75 (121)
T ss_dssp             CEEECSSCEEEEE--EEEEECSSSEEEEEEEEEEEECSTTCCEEEEECCCTTSSCGGGHHHHHHHHHHHTTSC-------
T ss_pred             ceeccCCcEEEEE--EEEEecCCCCeeEEEEEEEEEeeCCCCcEEeeeecCCCCCHHHHHHHHHHHHHHHHhc-------
Confidence            3569999886554  563    33    6899999999999999953  334455544443332222222222       


Q ss_pred             HHHHHHHhhCCCceEEEEEe
Q 042138           94 EHLLSALEAKGVDNCKIEIH  113 (295)
Q Consensus        94 EHLlAAL~glgIDN~~Iei~  113 (295)
                           .|.|+-|-|+.|.|.
T Consensus        76 -----~l~G~pv~dv~v~l~   90 (121)
T d2bv3a3          76 -----PLIGFPVVDIKVTLY   90 (121)
T ss_dssp             -----SSSSCCBCSEEEEEE
T ss_pred             -----CcCCCEeEEEEEEEE
Confidence                 257899999999995