Citrus Sinensis ID: 042146

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260--
Protein Sequence
MSSDRSLESFRPYTLTQTLNGHLRAVSYVKFSHDGRLLTSSSAEKTLLTYSLSSISNFDSTPPSPLQKFTGHEQGISDLATIRLWDVPTATSLKTLIGHTNYVFCINFNPQSNRIVSDTFNETIRIWDIKTGKCLKVLPAHSDPVTAIDFNRDGTMIVTSSYDGLYRILDASTPNGKFILVGTLDNTLRLWNYSTRKILKTYSGYTNSKYCISSTFSVTNGKYIVSHRDPVISVASHPAKNIIASGALDNDRTMKIWTQEKE
Secondary Structure (PSIPRED)
ccccccEEEEEccccccccccccccEEEEEEcccccEEEEEcccccEEEEcccccccccccccccEEEEccccccEEEccEEEEEEcccccEEEEcccccccEEEEEEcccccEEEEEcccccEEEEEccccEEEcccccccccEEEEEEcccccEEEEEEccccEEEEEcccccccEEEEEEccccEEEEEccccEEEEEEEcccccEEEEEEEEEcccccEEEEccccEEEEEEcccccEEEEEccccccEEEEEEcccc
Secondary Structure Prediction (SSPRO)
cccccEEEEEccccEEEEEccccccEEEEEEcccccEEEEEccccEEEEEEcccccEEEEccccEEEEEEccccccccccEEEEEEcccccEEEEEEcccccEEEEEEcccccEEEEEccccEEEEEEcccccEEEEEccccccEEEEEEcccccEEEEcccccEEEEEEcccccccEEEEEccccEEEEEEcccccEEEEEccccccEEEEEEcccccEEEEEEcccccEEEEEEcccccEEEEEEcccccEEEEEEcccc
Coil and Loop (DISEMBL)
mssdrslesfrpytlTQTLNGHLRAVSYVkfshdgrlltsssaeKTLLTYSLSsisnfdstppsplqkftgheqgisDLATirlwdvptatslktlightnyvfcinfnpqsnrivsdtfNETIRIwdiktgkclkvlpahsdpvtaidfnrdgtmivtssYDGLYRIldastpngkfiLVGTLDNTLRLWNYSTRKILKtysgytnskycisstfsvtngkyivshrdpvisvashpakniiasgaldndrtMKIWTQEKE
Flexible Loop (DISEMBL)
mssdrslesfrpytltqtlnghLRAVSYVKFSHDGRLLTSSSAEKTLLTYSLSSISNFDSTPPSPLQKFTGHEQGISDLATIRLWDVPTATSLKTLIGHTNYVFCINFNPQSNRIVSDTFNETIRIWDIKTGKCLKVLPAHsdpvtaidfnrdgTMIVTSSYDGLYRILDASTPNGKFILVGTLDNTLRLWNYSTRKIlktysgytnskYCISSTFSVTNGKYIVSHRDPVisvashpakniiasgaldndrtMKIWTQEKE
Low Complexity Region (SEG)
MSSDRSLESFRPYTLTQTLNGHLRAVSYVKFSHDGRLLTSSSAEKTLLTYSLSSISNFDSTPPSPLQKFTGHEQGISDLATIRLWDVPTATSLKTLIGHTNYVFCINFNPQSNRIVSDTFNETIRIWDIKTGKCLKVLPAHSDPVTAIDFNRDGTMIVTSSYDGLYRILDASTPNGKFILVGTLDNTLRLWNYSTRKILKTYSGYTNSKYCISSTFSVTNGKYIVSHRDPVISVASHPAKNIIASGALDNDRTMKIWTQEKE
Disordered region (IsUnstruct)
***********PYTLTQTLNGHLRAVSYVKFSHDGRLLT******TLLTY***********************QGISDLATIRLWDVPTATSLKTLIGHTNYVFCINFNPQSNRIVSDTFNETIRIWDIKTGKCLKVLPAHSDPVTAIDFNRDGTMIVTSSYDGLYRILDASTPNGKFILVGTLDNTLRLWNYSTRKILKTYSGYTNSKYCISSTFSVTNGKYIVSHRDPVISVASHPAKNIIASGAL**************
Disordered Region (DISOPRED)
MSSDRSLESFRPYTLTQTLNGHLRAVSYVKFSHDGRLLTSSSAEKTLLTYSLSSISNFDSTPPSPLQKFTGHEQGISDLATIRLWDVPTATSLKTLIGHTNYVFCINFNPQSNRIVSDTFNETIRIWDIKTGKCLKVLPAHSDPVTAIDFNRDGTMIVTSSYDGLYRILDASTPNGKFILVGTLDNTLRLWNYSTRKILKTYSGYTNSKYCISSTFSVTNGKYIVSHRDPVISVASHPAKNIIASGALDNDRTMKIWTQEK*
Disordered Region (DISEMBL)
*********FRPYTLTQTLNGHLRAVSYVKFSHDGRLLTSSSAEKTLLTYSLSSISNFDSTPPSPLQKFTGHEQGISDLATIRLWDVPTATSLKTLIGHTNYVFCINFNPQSNRIVSDTFNETIRIWDIKTGKCLKVLPAHSDPVTAIDFNRDGTMIVTSSYDGLYRILDASTPNGKFILVGTLDNTLRLWNYSTRKILKTYSGYTNSKYCISSTFSVTNGKYIVSHRDPVISVASHPAKNIIASGALDNDRTMKIWTQEKE
Disordered Region (DISPRO)
**SDRSLESFRPYTLTQTLNGHLRAVSYVKFSHDGRLLTSSSAEKTLLTYSLSSISNFDSTPPSPLQKFTGHEQGISDLATIRLWDVPTATSLKTLIGHTNYVFCINFNPQSNRIVSDTFNETIRIWDIKTGKCLKVLPAHSDPVTAIDFNRDGTMIVTSSYDGLYRILDASTPNGKFILVGTLDNTLRLWNYSTRKILKTYSGYTNSKYCISSTFSVTNGKYIVSHRDPVISVASHPAKNIIASGALDNDRTMKIWTQE**
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MSSDRSLESFRPYTLTQTLNGHLRAVSYVKFSHDGRLLTSSSAEKTLLTYSLSSISNFDSTPPSPLQKFTGHEQGISDLATIRLWDVPTATSLKTLIGHTNYVFCINFNPQSNRIVSDTFNETIRIWDIKTGKCLKVLPAHSDPVTAIDFNRDGTMIVTSSYDGLYRILDASTPNGKFILVGTLDNTLRLWNYSTRKILKTYSGYTNSKYCISSTFSVTNGKYIVSHRDPVISVASHPAKNIIASGALDNDRTMKIWTQEKE
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	262	2.2.26 [Sep-21-2011]
Q2KIG2	334	WD repeat-containing prot	yes	no	0.916	0.718	0.482	2e-73
Q498M4	334	WD repeat-containing prot	yes	no	0.916	0.718	0.482	2e-73
P61965	334	WD repeat-containing prot	yes	no	0.916	0.718	0.482	2e-73
P61964	334	WD repeat-containing prot	yes	no	0.916	0.718	0.482	2e-73
Q5M786	334	WD repeat-containing prot	yes	no	0.916	0.718	0.482	4e-73
Q9V3J8	361	Protein will die slowly O	yes	no	0.916	0.664	0.475	2e-72
Q54KL5	335	WD repeat-containing prot	yes	no	0.904	0.707	0.462	1e-69
Q86VZ2	330	WD repeat-containing prot	no	no	0.904	0.718	0.457	5e-67
Q5RE95	330	WD repeat-containing prot	yes	no	0.904	0.718	0.453	1e-66
A8X8C6	368	WD repeat-containing prot	N/A	no	0.904	0.644	0.421	3e-65

>sp|Q2KIG2|WDR5_BOVIN WD repeat-containing protein 5 OS=Bos taurus GN=WDR5 PE=2 SV=1

 Score =  275 bits (704), Expect = 2e-73,   Method: Compositional matrix adjust.
 Identities = 148/307 (48%), Positives = 187/307 (60%), Gaps = 67/307 (21%)

Query: 13  YTLTQTLNGHLRAVSYVKFSHDGRLLTSSSAEKTLLTYSLSSISNFDSTPPSPLQKFTGH 72
           Y L  TL GH +AVS VKFS +G  L SSSA+K +  +       F+ T        +GH
Sbjct: 35  YALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYD-GKFEKT-------ISGH 86

Query: 73  EQGISDLA---------------TIRLWDVPTATSLKTLIGHTNYVFCINFNPQSNRIVS 117
           + GISD+A               T+++WDV +   LKTL GH+NYVFC NFNPQSN IVS
Sbjct: 87  KLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVS 146

Query: 118 DTFNETIRIWDIKTGKCLKVLPAHSDPVTAIDFNRDGTMIVTSSYDGLYRILDAS----- 172
            +F+E++RIWD+KTGKCLK LPAHSDPV+A+ FNRDG++IV+SSYDGL RI D +     
Sbjct: 147 GSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCL 206

Query: 173 ----------------TPNGKFILVGTLDNTLRLWNYSTRKILKTYSGYTNSKYCISSTF 216
                           +PNGK+IL  TLDNTL+LW+YS  K LKTY+G+ N KYCI + F
Sbjct: 207 KTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANF 266

Query: 217 SVTNGKYIVS-----------------------HRDPVISVASHPAKNIIASGALDNDRT 253
           SVT GK+IVS                       H D VIS A HP +NIIAS AL+ND+T
Sbjct: 267 SVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKT 326

Query: 254 MKIWTQE 260
           +K+W  +
Sbjct: 327 IKLWKSD 333

Contributes to histone modification. May position the N-terminus of histone H3 for efficient trimethylation at 'Lys-4'. As part of the MLL1/MLL complex it is involved in methylation and dimethylation at 'Lys-4' of histone H3. H3 'Lys-4' methylation represents a specific tag for epigenetic transcriptional activation. As part of the NSL complex it may be involved in acetylation of nucleosomal histone H4 on several lysine residues. May regulate osteoblasts differentiation.
Bos taurus (taxid: 9913)

>sp|Q498M4|WDR5_RAT WD repeat-containing protein 5 OS=Rattus norvegicus GN=Wdr5 PE=2 SV=1

 Score =  275 bits (704), Expect = 2e-73,   Method: Compositional matrix adjust.
 Identities = 148/307 (48%), Positives = 187/307 (60%), Gaps = 67/307 (21%)

Query: 13  YTLTQTLNGHLRAVSYVKFSHDGRLLTSSSAEKTLLTYSLSSISNFDSTPPSPLQKFTGH 72
           Y L  TL GH +AVS VKFS +G  L SSSA+K +  +       F+ T        +GH
Sbjct: 35  YALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYD-GKFEKT-------ISGH 86

Query: 73  EQGISDLA---------------TIRLWDVPTATSLKTLIGHTNYVFCINFNPQSNRIVS 117
           + GISD+A               T+++WDV +   LKTL GH+NYVFC NFNPQSN IVS
Sbjct: 87  KLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVS 146

Query: 118 DTFNETIRIWDIKTGKCLKVLPAHSDPVTAIDFNRDGTMIVTSSYDGLYRILDAS----- 172
            +F+E++RIWD+KTGKCLK LPAHSDPV+A+ FNRDG++IV+SSYDGL RI D +     
Sbjct: 147 GSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCL 206

Query: 173 ----------------TPNGKFILVGTLDNTLRLWNYSTRKILKTYSGYTNSKYCISSTF 216
                           +PNGK+IL  TLDNTL+LW+YS  K LKTY+G+ N KYCI + F
Sbjct: 207 KTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANF 266

Query: 217 SVTNGKYIVS-----------------------HRDPVISVASHPAKNIIASGALDNDRT 253
           SVT GK+IVS                       H D VIS A HP +NIIAS AL+ND+T
Sbjct: 267 SVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKT 326

Query: 254 MKIWTQE 260
           +K+W  +
Sbjct: 327 IKLWKSD 333

Contributes to histone modification. May position the N-terminus of histone H3 for efficient trimethylation at 'Lys-4'. As part of the MLL1/MLL complex it is involved in methylation and dimethylation at 'Lys-4' of histone H3. H3 'Lys-4' methylation represents a specific tag for epigenetic transcriptional activation. As part of the NSL complex it may be involved in acetylation of nucleosomal histone H4 on several lysine residues. May regulate osteoblasts differentiation.

Rattus norvegicus (taxid: 10116)

>sp|P61965|WDR5_MOUSE WD repeat-containing protein 5 OS=Mus musculus GN=Wdr5 PE=1 SV=1

 Score =  275 bits (704), Expect = 2e-73,   Method: Compositional matrix adjust.
 Identities = 148/307 (48%), Positives = 187/307 (60%), Gaps = 67/307 (21%)

Query: 13  YTLTQTLNGHLRAVSYVKFSHDGRLLTSSSAEKTLLTYSLSSISNFDSTPPSPLQKFTGH 72
           Y L  TL GH +AVS VKFS +G  L SSSA+K +  +       F+ T        +GH
Sbjct: 35  YALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYD-GKFEKT-------ISGH 86

Query: 73  EQGISDLA---------------TIRLWDVPTATSLKTLIGHTNYVFCINFNPQSNRIVS 117
           + GISD+A               T+++WDV +   LKTL GH+NYVFC NFNPQSN IVS
Sbjct: 87  KLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVS 146

Query: 118 DTFNETIRIWDIKTGKCLKVLPAHSDPVTAIDFNRDGTMIVTSSYDGLYRILDAS----- 172
            +F+E++RIWD+KTGKCLK LPAHSDPV+A+ FNRDG++IV+SSYDGL RI D +     
Sbjct: 147 GSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCL 206

Query: 173 ----------------TPNGKFILVGTLDNTLRLWNYSTRKILKTYSGYTNSKYCISSTF 216
                           +PNGK+IL  TLDNTL+LW+YS  K LKTY+G+ N KYCI + F
Sbjct: 207 KTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANF 266

Query: 217 SVTNGKYIVS-----------------------HRDPVISVASHPAKNIIASGALDNDRT 253
           SVT GK+IVS                       H D VIS A HP +NIIAS AL+ND+T
Sbjct: 267 SVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKT 326

Query: 254 MKIWTQE 260
           +K+W  +
Sbjct: 327 IKLWKSD 333

Contributes to histone modification. May position the N-terminus of histone H3 for efficient trimethylation at 'Lys-4'. As part of the MLL1/MLL complex it is involved in methylation and dimethylation at 'Lys-4' of histone H3. H3 'Lys-4' methylation represents a specific tag for epigenetic transcriptional activation. As part of the NSL complex it may be involved in acetylation of nucleosomal histone H4 on several lysine residues. May regulate osteoblasts differentiation.

Mus musculus (taxid: 10090)

>sp|P61964|WDR5_HUMAN WD repeat-containing protein 5 OS=Homo sapiens GN=WDR5 PE=1 SV=1

 Score =  275 bits (704), Expect = 2e-73,   Method: Compositional matrix adjust.
 Identities = 148/307 (48%), Positives = 187/307 (60%), Gaps = 67/307 (21%)

Query: 13  YTLTQTLNGHLRAVSYVKFSHDGRLLTSSSAEKTLLTYSLSSISNFDSTPPSPLQKFTGH 72
           Y L  TL GH +AVS VKFS +G  L SSSA+K +  +       F+ T        +GH
Sbjct: 35  YALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYD-GKFEKT-------ISGH 86

Query: 73  EQGISDLA---------------TIRLWDVPTATSLKTLIGHTNYVFCINFNPQSNRIVS 117
           + GISD+A               T+++WDV +   LKTL GH+NYVFC NFNPQSN IVS
Sbjct: 87  KLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVS 146

Query: 118 DTFNETIRIWDIKTGKCLKVLPAHSDPVTAIDFNRDGTMIVTSSYDGLYRILDAS----- 172
            +F+E++RIWD+KTGKCLK LPAHSDPV+A+ FNRDG++IV+SSYDGL RI D +     
Sbjct: 147 GSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCL 206

Query: 173 ----------------TPNGKFILVGTLDNTLRLWNYSTRKILKTYSGYTNSKYCISSTF 216
                           +PNGK+IL  TLDNTL+LW+YS  K LKTY+G+ N KYCI + F
Sbjct: 207 KTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANF 266

Query: 217 SVTNGKYIVS-----------------------HRDPVISVASHPAKNIIASGALDNDRT 253
           SVT GK+IVS                       H D VIS A HP +NIIAS AL+ND+T
Sbjct: 267 SVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKT 326

Query: 254 MKIWTQE 260
           +K+W  +
Sbjct: 327 IKLWKSD 333

Contributes to histone modification. May position the N-terminus of histone H3 for efficient trimethylation at 'Lys-4'. As part of the MLL1/MLL complex it is involved in methylation and dimethylation at 'Lys-4' of histone H3. H3 'Lys-4' methylation represents a specific tag for epigenetic transcriptional activation. As part of the NSL complex it may be involved in acetylation of nucleosomal histone H4 on several lysine residues. May regulate osteoblasts differentiation.

Homo sapiens (taxid: 9606)

>sp|Q5M786|WDR5_XENTR WD repeat-containing protein 5 OS=Xenopus tropicalis GN=wdr5 PE=2 SV=1

 Score =  274 bits (701), Expect = 4e-73,   Method: Compositional matrix adjust.
 Identities = 148/307 (48%), Positives = 187/307 (60%), Gaps = 67/307 (21%)

Query: 13  YTLTQTLNGHLRAVSYVKFSHDGRLLTSSSAEKTLLTYSLSSISNFDSTPPSPLQKFTGH 72
           YTL  TL GH +AVS VKFS +G  L SSSA+K +  +       F+ T        +GH
Sbjct: 35  YTLKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYD-GKFEKT-------ISGH 86

Query: 73  EQGISDLA---------------TIRLWDVPTATSLKTLIGHTNYVFCINFNPQSNRIVS 117
           + GISD+A               T+++WDV +   LKTL GH+NYVFC NFNPQSN IVS
Sbjct: 87  KLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVS 146

Query: 118 DTFNETIRIWDIKTGKCLKVLPAHSDPVTAIDFNRDGTMIVTSSYDGLYRILDAS----- 172
            +F+E++RIWD+KTGKCLK LPAHSDPV+A+ FNRDG++IV+SSYDGL RI D +     
Sbjct: 147 GSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCL 206

Query: 173 ----------------TPNGKFILVGTLDNTLRLWNYSTRKILKTYSGYTNSKYCISSTF 216
                           +PNGK+IL  TLDNTL+LW+YS  K LKTY+ + N KYCI + F
Sbjct: 207 KTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTCHKNEKYCIFANF 266

Query: 217 SVTNGKYIVS-----------------------HRDPVISVASHPAKNIIASGALDNDRT 253
           SVT GK+IVS                       H D VIS A HP +NIIAS AL+ND+T
Sbjct: 267 SVTGGKWIVSGSEDNLVYIWNLQTKEVVQKLQGHTDVVISTACHPTENIIASAALENDKT 326

Query: 254 MKIWTQE 260
           +K+W  +
Sbjct: 327 IKLWKSD 333

Contributes to histone modification. May position the N-terminus of histone H3 for efficient trimethylation at 'Lys-4'. As part of the MLL1/MLL complex it is involved in methylation and dimethylation at 'Lys-4' of histone H3. H3 'Lys-4' methylation represents a specific tag for epigenetic transcriptional activation. As part of the NSL complex it may be involved in acetylation of nucleosomal histone H4 on several lysine residues. May regulate osteoblasts differentiation.

Xenopus tropicalis (taxid: 8364)

>sp|Q9V3J8|WDS_DROME Protein will die slowly OS=Drosophila melanogaster GN=wds PE=2 SV=1

 Score =  272 bits (695), Expect = 2e-72,   Method: Compositional matrix adjust.
 Identities = 146/307 (47%), Positives = 188/307 (61%), Gaps = 67/307 (21%)

Query: 13  YTLTQTLNGHLRAVSYVKFSHDGRLLTSSSAEKTLLTYSLSSISNFDSTPPSPLQKFTGH 72
           YTL  TL GH +AVS VKFS +G  L SSSA+K +  +       F+ T        +GH
Sbjct: 62  YTLKFTLAGHTKAVSAVKFSPNGEWLASSSADKLIKIWGAYD-GKFEKT-------ISGH 113

Query: 73  EQGISDLA---------------TIRLWDVPTATSLKTLIGHTNYVFCINFNPQSNRIVS 117
           + GISD+A               T+++W++ T  SLKTL GH+NYVFC NFNPQSN IVS
Sbjct: 114 KLGISDVAWSSDSRLLVSGSDDKTLKVWELSTGKSLKTLKGHSNYVFCCNFNPQSNLIVS 173

Query: 118 DTFNETIRIWDIKTGKCLKVLPAHSDPVTAIDFNRDGTMIVTSSYDGLYRILDAS----- 172
            +F+E++RIWD++TGKCLK LPAHSDPV+A+ FNRDG++IV+SSYDGL RI D +     
Sbjct: 174 GSFDESVRIWDVRTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCL 233

Query: 173 ----------------TPNGKFILVGTLDNTLRLWNYSTRKILKTYSGYTNSKYCISSTF 216
                           +PNGK+IL  TLDNTL+LW+YS  K LKTY+G+ N KYCI + F
Sbjct: 234 KTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANF 293

Query: 217 SVTNGKYIVS-----------------------HRDPVISVASHPAKNIIASGALDNDRT 253
           SVT GK+IVS                       H D V+  A HP +NIIAS AL+ND+T
Sbjct: 294 SVTGGKWIVSGSEDNMVYIWNLQSKEVVQKLQGHTDTVLCTACHPTENIIASAALENDKT 353

Query: 254 MKIWTQE 260
           +K+W  +
Sbjct: 354 IKLWKSD 360

Essential for viability.

Drosophila melanogaster (taxid: 7227)

>sp|Q54KL5|WDR5_DICDI WD repeat-containing protein 5 homolog OS=Dictyostelium discoideum GN=wdr5 PE=3 SV=1

 Score =  263 bits (672), Expect = 1e-69,   Method: Compositional matrix adjust.
 Identities = 141/305 (46%), Positives = 186/305 (60%), Gaps = 68/305 (22%)

Query: 13  YTLTQTLNGHLRAVSYVKFSHDGRLLTSSSAEKTLLTYSLSSISNFDSTPPSPLQKFTGH 72
           Y L  TL GHL+++S VKFS DG+ L S+SA+KT+  +       +D      L+   GH
Sbjct: 36  YILKYTLKGHLKSISSVKFSPDGKWLASASADKTIKIWGA-----YDGKFERTLE---GH 87

Query: 73  EQGISDLA---------------TIRLWDVPTATSLKTLIGHTNYVFCINFNPQSNRIVS 117
           ++GISD+A               TI++WDV +   +KTL GH  YVF ++FNPQSN IVS
Sbjct: 88  KEGISDIAWSQDSKLICSASDDKTIKIWDVESGKMVKTLKGHKEYVFGVSFNPQSNLIVS 147

Query: 118 DTFNETIRIWDIKTGKCLKVLPAHSDPVTAIDFNRDGTMIVTSSYDGLYRILDAST---- 173
            +F+E +RIWD+ TG+C K++ AHSDPVT + FNRDGT++V+ SYDG  RI D +T    
Sbjct: 148 GSFDENVRIWDVNTGECTKMISAHSDPVTGVHFNRDGTLVVSGSYDGTVRIWDTTTGQLL 207

Query: 174 -----------------PNGKFILVGTLDNTLRLWNY-STRKILKTYSGYTNSKYCISST 215
                            PNGKF+L GTLDNTLRLW+Y + +K LKTY+G+ N KYCI ST
Sbjct: 208 NTISTEDGKEVSFVKFSPNGKFVLAGTLDNTLRLWSYNNNKKCLKTYTGHKNEKYCIFST 267

Query: 216 FSVTNGKYIVS-----------------------HRDPVISVASHPAKNIIASGALDNDR 252
           FSVT GK+IV+                       H D V++VA HP +NIIASGAL+ DR
Sbjct: 268 FSVTCGKWIVTGSEDNLIYIYNLQTREIVQTLAGHEDVVLTVACHPTENIIASGALEKDR 327

Query: 253 TMKIW 257
           ++KIW
Sbjct: 328 SVKIW 332

Dictyostelium discoideum (taxid: 44689)

>sp|Q86VZ2|WDR5B_HUMAN WD repeat-containing protein 5B OS=Homo sapiens GN=WDR5B PE=2 SV=1

 Score =  254 bits (649), Expect = 5e-67,   Method: Compositional matrix adjust.
 Identities = 139/304 (45%), Positives = 179/304 (58%), Gaps = 67/304 (22%)

Query: 13  YTLTQTLNGHLRAVSYVKFSHDGRLLTSSSAEKTLLTYSLSSISNFDSTPPSPLQKFTGH 72
           Y L  TL GH  AVS VKFS +G  L SSSA++ ++ +       +D      L    GH
Sbjct: 31  YALKCTLVGHTEAVSSVKFSPNGEWLASSSADRLIIIWGA-----YDGKYEKTLY---GH 82

Query: 73  EQGISDLA---------------TIRLWDVPTATSLKTLIGHTNYVFCINFNPQSNRIVS 117
              ISD+A               T++LWDV +   LKTL GH+NYVFC NFNP SN I+S
Sbjct: 83  NLEISDVAWSSDSSRLVSASDDKTLKLWDVRSGKCLKTLKGHSNYVFCCNFNPPSNLIIS 142

Query: 118 DTFNETIRIWDIKTGKCLKVLPAHSDPVTAIDFNRDGTMIVTSSYDGLYRILDAS----- 172
            +F+ET++IW++KTGKCLK L AHSDPV+A+ FN  G++IV+ SYDGL RI DA+     
Sbjct: 143 GSFDETVKIWEVKTGKCLKTLSAHSDPVSAVHFNCSGSLIVSGSYDGLCRIWDAASGQCL 202

Query: 173 ----------------TPNGKFILVGTLDNTLRLWNYSTRKILKTYSGYTNSKYCISSTF 216
                           +PNGK+IL  TLDNTL+LW+YS  + LKTY+G+ N KYCI + F
Sbjct: 203 KTLVDDDNPPVSFVKFSPNGKYILTATLDNTLKLWDYSRGRCLKTYTGHKNEKYCIFANF 262

Query: 217 SVTNGKYIVS-----------------------HRDPVISVASHPAKNIIASGALDNDRT 253
           SVT GK+IVS                       H D VIS A HP +N+IAS AL+ND+T
Sbjct: 263 SVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISAACHPTENLIASAALENDKT 322

Query: 254 MKIW 257
           +K+W
Sbjct: 323 IKLW 326

May function as a substrate receptor for CUL4-DDB1 ubiquitin E3 ligase complex.

Homo sapiens (taxid: 9606)

>sp|Q5RE95|WDR5B_PONAB WD repeat-containing protein 5B OS=Pongo abelii PE=2 SV=1

 Score =  253 bits (645), Expect = 1e-66,   Method: Compositional matrix adjust.
 Identities = 138/304 (45%), Positives = 179/304 (58%), Gaps = 67/304 (22%)

Query: 13  YTLTQTLNGHLRAVSYVKFSHDGRLLTSSSAEKTLLTYSLSSISNFDSTPPSPLQKFTGH 72
           Y L  TL GH  AVS VKFS +G  L SSSA++ ++ +       +D      L    GH
Sbjct: 31  YALKCTLVGHTEAVSSVKFSPNGEWLASSSADRLIIIWGA-----YDGKYERTLY---GH 82

Query: 73  EQGISDLA---------------TIRLWDVPTATSLKTLIGHTNYVFCINFNPQSNRIVS 117
              ISD+A               T++LWD+ +   LKTL GH+NYVFC NFNP SN I+S
Sbjct: 83  NLEISDVAWSSDSSRLVSASDDKTLKLWDMRSGKCLKTLKGHSNYVFCCNFNPPSNLIIS 142

Query: 118 DTFNETIRIWDIKTGKCLKVLPAHSDPVTAIDFNRDGTMIVTSSYDGLYRILDAS----- 172
            +F+ET++IW++KTGKCLK L AHSDPV+A+ FN  G++IV+ SYDGL RI DA+     
Sbjct: 143 GSFDETVKIWEVKTGKCLKTLSAHSDPVSAVHFNCSGSLIVSGSYDGLCRIWDAASGQCL 202

Query: 173 ----------------TPNGKFILVGTLDNTLRLWNYSTRKILKTYSGYTNSKYCISSTF 216
                           +PNGK+IL  TLDNTL+LW+YS  + LKTY+G+ N KYCI + F
Sbjct: 203 KTLVDDDNPPVSFVKFSPNGKYILTATLDNTLKLWDYSRGRCLKTYTGHKNEKYCIFANF 262

Query: 217 SVTNGKYIVS-----------------------HRDPVISVASHPAKNIIASGALDNDRT 253
           SVT GK+IVS                       H D VIS A HP +N+IAS AL+ND+T
Sbjct: 263 SVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISAACHPTENLIASAALENDKT 322

Query: 254 MKIW 257
           +K+W
Sbjct: 323 IKLW 326

May function as a substrate receptor for CUL4-DDB1 ubiquitin E3 ligase complex.

Pongo abelii (taxid: 9601)

>sp|A8X8C6|TG125_CAEBR WD repeat-containing protein tag-125 OS=Caenorhabditis briggsae GN=tag-125 PE=4 SV=1

 Score =  248 bits (633), Expect = 3e-65,   Method: Compositional matrix adjust.
 Identities = 128/304 (42%), Positives = 180/304 (59%), Gaps = 67/304 (22%)

Query: 13  YTLTQTLNGHLRAVSYVKFSHDGRLLTSSSAEKTLLTYSLSSISNFDSTPPSPLQKFTGH 72
           Y L  T+ GH +++S VKFS  G+ L +SSA+KT+  +++S +S          +  TGH
Sbjct: 69  YKLISTIEGHTKSISAVKFSPCGKFLGTSSADKTVKIWNMSDLSC--------ERTLTGH 120

Query: 73  EQGISDLA---------------TIRLWDVPTATSLKTLIGHTNYVFCINFNPQSNRIVS 117
           + G++D A               T+++++VPT    KTL GHTNYVFC NFNPQS+ +VS
Sbjct: 121 KLGVNDFAWSADSKSIVTASDDKTLKIYEVPTVKMAKTLKGHTNYVFCCNFNPQSSLVVS 180

Query: 118 DTFNETIRIWDIKTGKCLKVLPAHSDPVTAIDFNRDGTMIVTSSYDGLYRILDAS----- 172
            +F+E++RIWD++TG C+K LPAHSDPV+A+ FNRDG++I + SYDGL RI D +     
Sbjct: 181 GSFDESVRIWDVRTGMCVKTLPAHSDPVSAVSFNRDGSLITSGSYDGLVRIWDTANGQCV 240

Query: 173 ----------------TPNGKFILVGTLDNTLRLWNYSTRKILKTYSGYTNSKYCISSTF 216
                           +PNGK+IL   LDNTL+LW++   K LK Y G+ N+KYCI + F
Sbjct: 241 KTLVDDENPPVAFVKFSPNGKYILSSNLDNTLKLWDFGKGKTLKQYQGHENNKYCIFANF 300

Query: 217 SVTNGKYIVS-----------------------HRDPVISVASHPAKNIIASGALDNDRT 253
           SVT GK+I+S                       H   VI+   HP +N+IASGAL+ D T
Sbjct: 301 SVTGGKWIISGSEDCKIYVWNLQTKEVVQSLEGHTQAVIASDCHPMQNMIASGALEPDNT 360

Query: 254 MKIW 257
           ++IW
Sbjct: 361 IRIW 364

Caenorhabditis briggsae (taxid: 6238)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	262
356521875	329	PREDICTED: WD repeat-containing protein	0.973	0.775	0.582	1e-95
357478741	326	WD repeat-containing protein [Medicago t	0.992	0.797	0.571	2e-95
356563962	314	PREDICTED: WD repeat-containing protein	0.954	0.796	0.587	1e-94
449451353	318	PREDICTED: WD repeat-containing protein	0.969	0.798	0.570	2e-94
255576029	322	WD-repeat protein, putative [Ricinus com	0.984	0.801	0.581	2e-94
224084484	317	hypothetical protein POPTRDRAFT_760587 [	0.961	0.794	0.592	2e-94
359480530	313	PREDICTED: WD repeat-containing protein	0.969	0.811	0.582	1e-91
15229187	317	WD40 domain-containing protein [Arabidop	0.950	0.785	0.549	6e-88
297816196	317	transducin family protein [Arabidopsis l	0.950	0.785	0.536	4e-87
116782369	314	unknown [Picea sitchensis]	0.942	0.786	0.541	6e-86

>gi|356521875|ref|XP_003529576.1| PREDICTED: WD repeat-containing protein 5-like [Glycine max]

 Score =  355 bits (910), Expect = 1e-95,   Method: Compositional matrix adjust.
 Identities = 184/316 (58%), Positives = 222/316 (70%), Gaps = 61/316 (19%)

Query: 8   ESFRP-YTLTQTLNGHLRAVSYVKFSHDGRLLTSSSAEKTLLTYSLS-SISNFDSTPPSP 65
           +S +P Y L+QTL+GH RA+S VKFS +GRLL SS+A+KTL TY  + S S+ DS   SP
Sbjct: 14  DSMKPNYILSQTLSGHKRAISAVKFSSNGRLLASSAADKTLRTYGFTNSDSDSDSLTLSP 73

Query: 66  LQKFTGHEQGISDLA---------------TIRLWDVPTATSLKTLIGHTNYVFCINFNP 110
           +Q++ GHEQG+SDLA               T+RLWDVPT + +KTL GHTNYVFC+NFNP
Sbjct: 74  MQEYEGHEQGVSDLAFSSDSRFLVSASDDKTLRLWDVPTGSLIKTLHGHTNYVFCVNFNP 133

Query: 111 QSNRIVSDTFNETIRIWDIKTGKCLKVLPAHSDPVTAIDFNRDGTMIVTSSYDGLYRILD 170
           QSN IVS +F+ET+R+WD+K+GKCLKVLPAHSDPVTA+DFNRDG++IV+SSYDGL RI D
Sbjct: 134 QSNIIVSGSFDETVRVWDVKSGKCLKVLPAHSDPVTAVDFNRDGSLIVSSSYDGLCRIWD 193

Query: 171 AST---------------------PNGKFILVGTLDNTLRLWNYSTRKILKTYSGYTNSK 209
           AST                     PN KFILVGTLDNTLRLWNYST K LKTY+G+ NSK
Sbjct: 194 ASTGHCMKTLIDDENPPVSFVKFSPNAKFILVGTLDNTLRLWNYSTGKFLKTYTGHVNSK 253

Query: 210 YCISSTFSVTNGKYIV-----------------------SHRDPVISVASHPAKNIIASG 246
           YCISSTFS+TNGKYIV                        H D V+SV+ HP +N+IASG
Sbjct: 254 YCISSTFSITNGKYIVGGSEDNCIYLWDLQSRKIVQKLEGHSDAVVSVSCHPTENMIASG 313

Query: 247 ALDNDRTMKIWTQEKE 262
           AL ND T+KIWTQ+K+
Sbjct: 314 ALGNDNTVKIWTQQKD 329

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357478741|ref|XP_003609656.1| WD repeat-containing protein [Medicago truncatula] gi|355510711|gb|AES91853.1| WD repeat-containing protein [Medicago truncatula]

 Score =  354 bits (909), Expect = 2e-95,   Method: Compositional matrix adjust.
 Identities = 184/322 (57%), Positives = 224/322 (69%), Gaps = 62/322 (19%)

Query: 1   MSSDRSLESFRPYTLTQTLNGHLRAVSYVKFSHDGRLLTSSSAEKTLLTYSLS-SISNFD 59
           M  D S  +++PYTL+QTL GH RA+S VKFS +GRLL SSSA+KTL TY  + S S+ +
Sbjct: 7   MDCDSS--NYKPYTLSQTLTGHKRAISAVKFSSNGRLLASSSADKTLRTYGFTNSDSDSN 64

Query: 60  STPPSPLQKFTGHEQGISDLA---------------TIRLWDVPTATSLKTLIGHTNYVF 104
           S   SP+Q++ GH+ G+SDLA               TIRLWDVPT + +KTL GHTNYVF
Sbjct: 65  SLTLSPMQQYEGHQHGVSDLAFSSDSRYLVSASDDKTIRLWDVPTGSLVKTLHGHTNYVF 124

Query: 105 CINFNPQSNRIVSDTFNETIRIWDIKTGKCLKVLPAHSDPVTAIDFNRDGTMIVTSSYDG 164
           C+NFNPQSN IVS +F+ET+R+WD+K+GKCLKVLPAHSDPVTA+DFNRDGT+IV+SSYDG
Sbjct: 125 CVNFNPQSNVIVSGSFDETVRVWDVKSGKCLKVLPAHSDPVTAVDFNRDGTLIVSSSYDG 184

Query: 165 LYRILDAST---------------------PNGKFILVGTLDNTLRLWNYSTRKILKTYS 203
           L RI DAST                     PN KFILVGTLDN LRLWNYST K LKTY+
Sbjct: 185 LCRIWDASTGHCIKTLIDDENPPVSYVKFSPNAKFILVGTLDNNLRLWNYSTGKFLKTYT 244

Query: 204 GYTNSKYCISSTFSVTNGKYIV-----------------------SHRDPVISVASHPAK 240
           G+ NSKYCISS+FS+TNGKY+V                        H D V+SV+ HP +
Sbjct: 245 GHVNSKYCISSSFSITNGKYVVGGSEDNCIYLWGLQSRKIVQKLEGHTDSVVSVSCHPTE 304

Query: 241 NIIASGALDNDRTMKIWTQEKE 262
           N+IASGAL ND+T+KIWTQ+K+
Sbjct: 305 NMIASGALGNDKTVKIWTQQKD 326

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356563962|ref|XP_003550226.1| PREDICTED: WD repeat-containing protein 5-like [Glycine max]

 Score =  352 bits (902), Expect = 1e-94,   Method: Compositional matrix adjust.
 Identities = 182/310 (58%), Positives = 218/310 (70%), Gaps = 60/310 (19%)

Query: 13  YTLTQTLNGHLRAVSYVKFSHDGRLLTSSSAEKTLLTYSLS-SISNFDSTPPSPLQKFTG 71
           YTL+QTL+GH RA+S VKFS +GRLL SS+A+KTL TY  + S S+ +S   SP+Q++ G
Sbjct: 5   YTLSQTLSGHKRAISAVKFSSNGRLLASSAADKTLRTYGFTNSDSDSESLTLSPMQQYEG 64

Query: 72  HEQGISDLA---------------TIRLWDVPTATSLKTLIGHTNYVFCINFNPQSNRIV 116
           HEQG+SDLA               T+RLWDVPT + +KTL GHTNYVFC+NFNPQSN IV
Sbjct: 65  HEQGVSDLAFSSDSRFLVSASDDKTLRLWDVPTGSLIKTLHGHTNYVFCVNFNPQSNIIV 124

Query: 117 SDTFNETIRIWDIKTGKCLKVLPAHSDPVTAIDFNRDGTMIVTSSYDGLYRILDAST--- 173
           S +F+ET+R+WD+K+GKCLKVLPAHSDPVTA+DFNRDG++IV+SSYDGL RI DAST   
Sbjct: 125 SGSFDETVRVWDVKSGKCLKVLPAHSDPVTAVDFNRDGSLIVSSSYDGLCRIWDASTGHC 184

Query: 174 ------------------PNGKFILVGTLDNTLRLWNYSTRKILKTYSGYTNSKYCISST 215
                             PN KFILVGTLDNTLRLWNYST K LKTY+G+ NSKYCISST
Sbjct: 185 MKTLIDDDNPPVSFVKFSPNAKFILVGTLDNTLRLWNYSTGKFLKTYTGHVNSKYCISST 244

Query: 216 FSVTNGKYIV-----------------------SHRDPVISVASHPAKNIIASGALDNDR 252
           FS TNGKYIV                        H D V+SV+ HP +N+IASGAL ND 
Sbjct: 245 FSTTNGKYIVGGSEENYIYLWDLQSRKIVQKLEGHSDAVVSVSCHPTENMIASGALGNDN 304

Query: 253 TMKIWTQEKE 262
           T+KIWTQ+K+
Sbjct: 305 TVKIWTQQKD 314

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449451353|ref|XP_004143426.1| PREDICTED: WD repeat-containing protein 5-like [Cucumis sativus] gi|449531922|ref|XP_004172934.1| PREDICTED: WD repeat-containing protein 5-like [Cucumis sativus]

 Score =  351 bits (901), Expect = 2e-94,   Method: Compositional matrix adjust.
 Identities = 182/319 (57%), Positives = 221/319 (69%), Gaps = 65/319 (20%)

Query: 1   MSSDRSLESFRPYTLTQTLNGHLRAVSYVKFSHDGRLLTSSSAEKTLLTYSLSSISNFDS 60
           +S     +S++PYTL+QTL  H R +S VKFS DGRLL SSSA+KTL TYS S+      
Sbjct: 2   LSEPSQTDSYKPYTLSQTLTSHKRCISSVKFSADGRLLGSSSADKTLRTYSCSN------ 55

Query: 61  TPPSPLQKFTGHEQGISDLA---------------TIRLWDVPTATSLKTLIGHTNYVFC 105
           +  +P+Q+F GHEQG+SDLA               T+RLWDV T + +KTL GHTNYVFC
Sbjct: 56  STVTPVQEFQGHEQGVSDLAFSSDSRFLVSASDDKTLRLWDVSTGSLVKTLNGHTNYVFC 115

Query: 106 INFNPQSNRIVSDTFNETIRIWDIKTGKCLKVLPAHSDPVTAIDFNRDGTMIVTSSYDGL 165
           +NFNPQSN IVS +F+ET+RIWD+K+GKCLKVLPAHSDPVT +DFNRDG++IV+SSYDGL
Sbjct: 116 VNFNPQSNMIVSGSFDETVRIWDVKSGKCLKVLPAHSDPVTGVDFNRDGSLIVSSSYDGL 175

Query: 166 YRILDAST---------------------PNGKFILVGTLDNTLRLWNYSTRKILKTYSG 204
            RI DAST                     PNGKFILVGTLDNTLRLWN+ST K LKTY+G
Sbjct: 176 CRIWDASTGHCVKTLIDDENPPVSFVKFSPNGKFILVGTLDNTLRLWNFSTGKFLKTYTG 235

Query: 205 YTNSKYCISSTFSVTNGKYIVS-----------------------HRDPVISVASHPAKN 241
           +TNSK+CISSTFSVTNG+YI S                       H D VISV+ HP++N
Sbjct: 236 HTNSKFCISSTFSVTNGRYIASGSEDNCVYLWELQTRQIVQKLEGHSDTVISVSCHPSEN 295

Query: 242 IIASGALDNDRTMKIWTQE 260
           +IASGA+ ND+T+KIWTQ+
Sbjct: 296 MIASGAVGNDKTVKIWTQK 314

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255576029|ref|XP_002528910.1| WD-repeat protein, putative [Ricinus communis] gi|223531664|gb|EEF33490.1| WD-repeat protein, putative [Ricinus communis]

 Score =  351 bits (901), Expect = 2e-94,   Method: Compositional matrix adjust.
 Identities = 185/318 (58%), Positives = 218/318 (68%), Gaps = 60/318 (18%)

Query: 4   DRSLESFRPYTLTQTLNGHLRAVSYVKFSHDGRLLTSSSAEKTLLTYSLSSISNFDSTPP 63
           D +++S++PY LTQTL GH RA+S +KFS DGR L SSSA+KTL TYSLS  SN  ++P 
Sbjct: 6   DTAIDSYKPYNLTQTLTGHKRAISSLKFSSDGRFLASSSADKTLKTYSLSP-SNPPTSPL 64

Query: 64  SPLQKFTGHEQG---------------ISDLATIRLWDVPTATSLKTLIGHTNYVFCINF 108
           +PL +F GHEQG                SD  TIRLWDV T + +KTL GHTNYVFC+NF
Sbjct: 65  TPLHEFHGHEQGVSDVSFSSDSRFLVSASDDKTIRLWDVTTGSQIKTLNGHTNYVFCVNF 124

Query: 109 NPQSNRIVSDTFNETIRIWDIKTGKCLKVLPAHSDPVTAIDFNRDGTMIVTSSYDGLYRI 168
           NPQSN IVS +F+ET+RIWD+KTGKCLKVLPAHSDPVTA+DFNRDG++IV+SSYDGL RI
Sbjct: 125 NPQSNMIVSGSFDETVRIWDVKTGKCLKVLPAHSDPVTAVDFNRDGSLIVSSSYDGLCRI 184

Query: 169 LDAST---------------------PNGKFILVGTLDNTLRLWNYSTRKILKTYSGYTN 207
            D+ T                     PNGKFILVGTLDNTLRLWN ST K LKTY+G+ N
Sbjct: 185 WDSGTGHCVKTLIDDENPPVSFVKFSPNGKFILVGTLDNTLRLWNSSTGKFLKTYTGHVN 244

Query: 208 SKYCISSTFSVTNGKYIVS-----------------------HRDPVISVASHPAKNIIA 244
           SK+C+SS FS+TNGKYIVS                       H D VISVA HP +N+IA
Sbjct: 245 SKFCLSSAFSITNGKYIVSGSEDNCVYLWELQTRKVVQKLEGHTDTVISVACHPTQNMIA 304

Query: 245 SGALDNDRTMKIWTQEKE 262
           SGAL  D T++IWTQ KE
Sbjct: 305 SGALGKDNTVRIWTQGKE 322

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224084484|ref|XP_002307312.1| hypothetical protein POPTRDRAFT_760587 [Populus trichocarpa] gi|222856761|gb|EEE94308.1| hypothetical protein POPTRDRAFT_760587 [Populus trichocarpa]

 Score =  351 bits (900), Expect = 2e-94,   Method: Compositional matrix adjust.
 Identities = 185/312 (59%), Positives = 217/312 (69%), Gaps = 60/312 (19%)

Query: 8   ESFRPYTLTQTLNGHLRAVSYVKFSHDGRLLTSSSAEKTLLTYSLSSISNFDSTPPSPLQ 67
           ES++PYTLTQTL GH   +S VKFS DGRLL SSSA+KTL TYS+S +SN  ++P + L 
Sbjct: 6   ESYKPYTLTQTLTGHKSPISSVKFSADGRLLGSSSADKTLRTYSIS-LSNPPTSPITHLH 64

Query: 68  KFTGHEQGISDLA---------------TIRLWDVPTATSLKTLIGHTNYVFCINFNPQS 112
            F GHEQG+SDLA               T+RLWDV T  ++KTL GHTNYVFC+NFNPQS
Sbjct: 65  DFHGHEQGVSDLAFSSDSRFIVSASDDKTLRLWDVTTGHTIKTLHGHTNYVFCVNFNPQS 124

Query: 113 NRIVSDTFNETIRIWDIKTGKCLKVLPAHSDPVTAIDFNRDGTMIVTSSYDGLYRILDAS 172
           N IVS +F+ET+RIWD+K+GKCLKVLPAHSDPVTA+DFNR+G++IV+SSYDGL RI DA 
Sbjct: 125 NMIVSGSFDETVRIWDVKSGKCLKVLPAHSDPVTAVDFNREGSLIVSSSYDGLCRIWDAG 184

Query: 173 T---------------------PNGKFILVGTLDNTLRLWNYSTRKILKTYSGYTNSKYC 211
           T                     PNGKFILVGTLDN LRLWN+ST K LKTY+G+ N+K+C
Sbjct: 185 TGHCIKTLIDDENPPVSFVKFSPNGKFILVGTLDNNLRLWNFSTGKFLKTYTGHVNTKFC 244

Query: 212 ISSTFSVTNGKYIV-----------------------SHRDPVISVASHPAKNIIASGAL 248
           IS TFSVTNGKYIV                        H D VISVA HP +NIIASGAL
Sbjct: 245 ISPTFSVTNGKYIVGGSEDSCVYLWELQSRKIVQKLEGHTDTVISVACHPTQNIIASGAL 304

Query: 249 DNDRTMKIWTQE 260
            ND+T+KIWTQE
Sbjct: 305 GNDKTVKIWTQE 316

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359480530|ref|XP_003632482.1| PREDICTED: WD repeat-containing protein 5-like [Vitis vinifera] gi|297735857|emb|CBI18611.3| unnamed protein product [Vitis vinifera]

 Score =  342 bits (876), Expect = 1e-91,   Method: Compositional matrix adjust.
 Identities = 187/321 (58%), Positives = 219/321 (68%), Gaps = 67/321 (20%)

Query: 1   MSSDRSLESFRPYTLTQTLNGHLRAVSYVKFSHDGRLLTSSSAEKTLLTYSLSSISNFDS 60
           M+SD S E   PY L QTL  H RAVS VKFS DG LL SSSA+KTL T+S S   +F  
Sbjct: 1   MASDPS-EFITPYKLKQTLTAHKRAVSAVKFSSDGLLLGSSSADKTLRTWSTSG--DF-- 55

Query: 61  TPPSPLQKFTGHEQGISDLA---------------TIRLWDVPTATSLKTLIGHTNYVFC 105
              S LQ+F GH+QGISDLA               T+RLWDV T + +KTL GHTN+VFC
Sbjct: 56  ---STLQEFHGHDQGISDLAFSSDSRHVCSASDDKTVRLWDVETGSLIKTLQGHTNHVFC 112

Query: 106 INFNPQSNRIVSDTFNETIRIWDIKTGKCLKVLPAHSDPVTAIDFNRDGTMIVTSSYDGL 165
           +NFNPQSN IVS +F+ET+R+WD+KTGKCLKVLPAHSDPVTA +FNRDG++IV+SSYDGL
Sbjct: 113 VNFNPQSNMIVSGSFDETVRVWDVKTGKCLKVLPAHSDPVTAANFNRDGSLIVSSSYDGL 172

Query: 166 YRILDAST---------------------PNGKFILVGTLDNTLRLWNYSTRKILKTYSG 204
            RI DAST                     PNGKFILVGTLDNTLRLWN+ST K LKTY+G
Sbjct: 173 CRIWDASTGHCMKTLIDDENPPVSFVKFSPNGKFILVGTLDNTLRLWNFSTGKFLKTYTG 232

Query: 205 YTNSKYCISSTFSVTNGKYIV-----------------------SHRDPVISVASHPAKN 241
           + NSKYCISSTFSVTNGKYIV                        H D VISV+ HP++N
Sbjct: 233 HVNSKYCISSTFSVTNGKYIVGGSEDNCVYLWELQTRKIVQKLEGHTDTVISVSCHPSQN 292

Query: 242 IIASGALDNDRTMKIWTQEKE 262
           +IASGAL +D+T+KIWTQE++
Sbjct: 293 MIASGALGSDKTVKIWTQERD 313

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|15229187|ref|NP_190535.1| WD40 domain-containing protein [Arabidopsis thaliana] gi|6723411|emb|CAB66904.1| putative WD-40 repeat-protein [Arabidopsis thaliana] gi|195604746|gb|ACG24203.1| hypothetical protein [Zea mays] gi|332645052|gb|AEE78573.1| WD40 domain-containing protein [Arabidopsis thaliana]

 Score =  329 bits (844), Expect = 6e-88,   Method: Compositional matrix adjust.
 Identities = 172/313 (54%), Positives = 214/313 (68%), Gaps = 64/313 (20%)

Query: 9   SFRPYTLTQTLNGHLRAVSYVKFSHDGRLLTSSSAEKTLLTYSLSSISNFDSTPPSPLQK 68
           SF PY  +QTL  H RAVS VKFS DGRLL S+SA+KT+ TY++++I++       P+Q+
Sbjct: 10  SFTPYVHSQTLTSHNRAVSSVKFSSDGRLLASASADKTIRTYTINTIND---PIAEPVQE 66

Query: 69  FTGHEQGISDLA---------------TIRLWDVPTATSLKTLIGHTNYVFCINFNPQSN 113
           FTGHE GISD+A               T++LWDV T + +KTLIGHTNY FC+NFNPQSN
Sbjct: 67  FTGHENGISDVAFSSDARFIVSASDDKTLKLWDVETGSLIKTLIGHTNYAFCVNFNPQSN 126

Query: 114 RIVSDTFNETIRIWDIKTGKCLKVLPAHSDPVTAIDFNRDGTMIVTSSYDGLYRILDAST 173
            IVS +F+ET+RIWD+ TGKCLKVLPAHSDPVTA+DFNRDG++IV+SSYDGL RI D+ T
Sbjct: 127 MIVSGSFDETVRIWDVTTGKCLKVLPAHSDPVTAVDFNRDGSLIVSSSYDGLCRIWDSGT 186

Query: 174 ---------------------PNGKFILVGTLDNTLRLWNYSTRKILKTYSGYTNSKYCI 212
                                PNGKFILVGTLDNTLRLWN S+ K LKTY+G+ N++YCI
Sbjct: 187 GHCVKTLIDDENPPVSFVRFSPNGKFILVGTLDNTLRLWNISSAKFLKTYTGHVNAQYCI 246

Query: 213 SSTFSVTNGKYIVS-----------------------HRDPVISVASHPAKNIIASGALD 249
           SS FSVTNGK IVS                       H + V++VA HP +N+IASG+L 
Sbjct: 247 SSAFSVTNGKRIVSGSEDNCVHMWELNSKKLLQKLEGHTETVMNVACHPTENLIASGSL- 305

Query: 250 NDRTMKIWTQEKE 262
            D+T++IWTQ+KE
Sbjct: 306 -DKTVRIWTQKKE 317

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297816196|ref|XP_002875981.1| transducin family protein [Arabidopsis lyrata subsp. lyrata] gi|297321819|gb|EFH52240.1| transducin family protein [Arabidopsis lyrata subsp. lyrata]

 Score =  327 bits (837), Expect = 4e-87,   Method: Compositional matrix adjust.
 Identities = 168/313 (53%), Positives = 213/313 (68%), Gaps = 64/313 (20%)

Query: 9   SFRPYTLTQTLNGHLRAVSYVKFSHDGRLLTSSSAEKTLLTYSLSSISNFDSTPPSPLQK 68
           SF PY  +QTL  H+RAVS VKFS DGRLL S+SA+KT+ TY+   ++  + T   P+++
Sbjct: 10  SFTPYIHSQTLTSHIRAVSSVKFSSDGRLLASASADKTIRTYT---VNTENETIAEPVRE 66

Query: 69  FTGHEQGISDLA---------------TIRLWDVPTATSLKTLIGHTNYVFCINFNPQSN 113
           FTGHE GISD+A               T++LWDV T + +KTLIGHTNY FC+NFNPQSN
Sbjct: 67  FTGHENGISDVAFSSDARFIVSASDDKTLKLWDVETGSLIKTLIGHTNYAFCVNFNPQSN 126

Query: 114 RIVSDTFNETIRIWDIKTGKCLKVLPAHSDPVTAIDFNRDGTMIVTSSYDGLYRILDAST 173
            IVS +F+ET+RIWD+ TGKCLKVLPAHSDPVTA+DFNRDG++IV+SSYDGL RI D+ T
Sbjct: 127 MIVSGSFDETVRIWDVTTGKCLKVLPAHSDPVTAVDFNRDGSLIVSSSYDGLCRIWDSGT 186

Query: 174 ---------------------PNGKFILVGTLDNTLRLWNYSTRKILKTYSGYTNSKYCI 212
                                PNGKFILVGTLDNTLRLWN ++ K LKTY+G+ N++YCI
Sbjct: 187 GHCIKTLIDDENPPVSFVRFSPNGKFILVGTLDNTLRLWNIASAKFLKTYTGHVNAQYCI 246

Query: 213 SSTFSVTNGKYIVS-----------------------HRDPVISVASHPAKNIIASGALD 249
           SS FSVTNGK IVS                       H + +++VA HP +N+IASG+L 
Sbjct: 247 SSAFSVTNGKRIVSGSEDNCVYMWELNSRKLLQKLEGHTETIMNVACHPTENLIASGSL- 305

Query: 250 NDRTMKIWTQEKE 262
            D++++IWTQ+KE
Sbjct: 306 -DKSVRIWTQKKE 317

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|116782369|gb|ABK22482.1| unknown [Picea sitchensis]

 Score =  323 bits (827), Expect = 6e-86,   Method: Compositional matrix adjust.
 Identities = 170/314 (54%), Positives = 206/314 (65%), Gaps = 67/314 (21%)

Query: 6   SLESFRPYTLTQTLNGHLRAVSYVKFSHDGRLLTSSSAEKTLLTYSLSSISNFDSTPPSP 65
           S  SF+PY L   L GH RAVS VKFS DG+LL S+SA+K++  +S       D +    
Sbjct: 8   SGNSFKPYKLKHILTGHKRAVSSVKFSADGKLLGSASADKSVRIWSAG-----DGSAKRE 62

Query: 66  LQKFTGHEQGISDLA---------------TIRLWDVPTATSLKTLIGHTNYVFCINFNP 110
           LQ   GH +G+SD+A               T+R+WDV T   +KTL GHTNYVFC+NFNP
Sbjct: 63  LQ---GHAEGVSDMAWSSDSHYVCSASDDKTLRIWDVHTGDCIKTLKGHTNYVFCVNFNP 119

Query: 111 QSNRIVSDTFNETIRIWDIKTGKCLKVLPAHSDPVTAIDFNRDGTMIVTSSYDGLYRILD 170
           QSN IVS +F+ET+RIWD++TGKCLKVLPAHSDPVTA+ FNRDG++IV+SSYDGL RI D
Sbjct: 120 QSNLIVSGSFDETVRIWDVRTGKCLKVLPAHSDPVTAVHFNRDGSLIVSSSYDGLCRIWD 179

Query: 171 AST---------------------PNGKFILVGTLDNTLRLWNYSTRKILKTYSGYTNSK 209
           ++T                     PNGKFIL GTLDNTLRLWN++T K LKTY+G+ NSK
Sbjct: 180 SATGHCLKTLIDDENPPVSFVNFSPNGKFILAGTLDNTLRLWNFATGKFLKTYTGHVNSK 239

Query: 210 YCISSTFSVTNGKYIVS-----------------------HRDPVISVASHPAKNIIASG 246
           YCISSTFSVTNGKYIVS                       H D VISV+ HP +N IASG
Sbjct: 240 YCISSTFSVTNGKYIVSGSEDNCVYLWDLQARNIVQKLEGHTDTVISVSCHPTENKIASG 299

Query: 247 ALDNDRTMKIWTQE 260
           AL+ND+T++IW QE
Sbjct: 300 ALENDKTLRIWVQE 313

Source: Picea sitchensis

Species: Picea sitchensis

Genus: Picea

Family: Pinaceae

Order: Coniferales

Class: Coniferopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	262
TAIR|locus:2097435	317	WDR5a "AT3G49660" [Arabidopsis	0.614	0.507	0.613	1.1e-53
FB|FBgn0040066	361	wds "will die slowly" [Drosoph	0.625	0.454	0.510	6.6e-42
UNIPROTKB|Q5M786	334	wdr5 "WD repeat-containing pro	0.583	0.458	0.528	4.6e-41
UNIPROTKB|G3N3E5	308	WDR5 "WD repeat-containing pro	0.583	0.496	0.522	1.6e-40
UNIPROTKB|Q2KIG2	334	WDR5 "WD repeat-containing pro	0.583	0.458	0.522	1.6e-40
UNIPROTKB|P61964	334	WDR5 "WD repeat-containing pro	0.583	0.458	0.522	1.6e-40
UNIPROTKB|F1S034	334	WDR5 "Uncharacterized protein"	0.583	0.458	0.522	1.6e-40
MGI|MGI:2155884	334	Wdr5 "WD repeat domain 5" [Mus	0.583	0.458	0.522	1.6e-40
RGD|1305159	334	Wdr5 "WD repeat domain 5" [Rat	0.583	0.458	0.522	1.6e-40
UNIPROTKB|A8X8C6	368	tag-125 "WD repeat-containing	0.599	0.426	0.467	9.9e-39

TAIR|locus:2097435 WDR5a "AT3G49660" [Arabidopsis thaliana (taxid:3702)]

 Score = 555 (200.4 bits), Expect = 1.1e-53, P = 1.1e-53
 Identities = 111/181 (61%), Positives = 138/181 (76%)

Query:     9 SFRPYTLTQTLNGHLRAVSYVKFSHDGRLLTSSSAEKTLLTYSLSSISNFDSTP-PSPLQ 67
             SF PY  +QTL  H RAVS VKFS DGRLL S+SA+KT+ TY++++I++    P   P+Q
Sbjct:    10 SFTPYVHSQTLTSHNRAVSSVKFSSDGRLLASASADKTIRTYTINTIND----PIAEPVQ 65

Query:    68 KFTGHEQGISDLA---------------TIRLWDVPTATSLKTLIGHTNYVFCINFNPQS 112
             +FTGHE GISD+A               T++LWDV T + +KTLIGHTNY FC+NFNPQS
Sbjct:    66 EFTGHENGISDVAFSSDARFIVSASDDKTLKLWDVETGSLIKTLIGHTNYAFCVNFNPQS 125

Query:   113 NRIVSDTFNETIRIWDIKTGKCLKVLPAHSDPVTAIDFNRDGTMIVTSSYDGLYRILDAS 172
             N IVS +F+ET+RIWD+ TGKCLKVLPAHSDPVTA+DFNRDG++IV+SSYDGL RI D+ 
Sbjct:   126 NMIVSGSFDETVRIWDVTTGKCLKVLPAHSDPVTAVDFNRDGSLIVSSSYDGLCRIWDSG 185

Query:   173 T 173
             T
Sbjct:   186 T 186

GO:0000166 "nucleotide binding" evidence=ISS

GO:0005634 "nucleus" evidence=ISM;IDA

GO:0005834 "heterotrimeric G-protein complex" evidence=ISS

GO:0007186 "G-protein coupled receptor signaling pathway" evidence=ISS

GO:0010228 "vegetative to reproductive phase transition of meristem" evidence=IMP

GO:0042393 "histone binding" evidence=IDA

GO:0048188 "Set1C/COMPASS complex" evidence=IPI

FB|FBgn0040066 wds "will die slowly" [Drosophila melanogaster (taxid:7227)]

 Score = 444 (161.4 bits), Expect = 6.6e-42, P = 6.6e-42
 Identities = 96/188 (51%), Positives = 128/188 (68%)

Query:     2 SSDRSLESFRP-YTLTQTLNGHLRAVSYVKFSHDGRLLTSSSAEKTLLTYSLSSISNFDS 60
             +S++S  S +P YTL  TL GH +AVS VKFS +G  L SSSA+K +  +       F+ 
Sbjct:    50 ASNKSSLSVKPNYTLKFTLAGHTKAVSAVKFSPNGEWLASSSADKLIKIWGAYD-GKFEK 108

Query:    61 TPPSPLQKFTGHEQGISDLA---------------TIRLWDVPTATSLKTLIGHTNYVFC 105
             T        +GH+ GISD+A               T+++W++ T  SLKTL GH+NYVFC
Sbjct:   109 T-------ISGHKLGISDVAWSSDSRLLVSGSDDKTLKVWELSTGKSLKTLKGHSNYVFC 161

Query:   106 INFNPQSNRIVSDTFNETIRIWDIKTGKCLKVLPAHSDPVTAIDFNRDGTMIVTSSYDGL 165
              NFNPQSN IVS +F+E++RIWD++TGKCLK LPAHSDPV+A+ FNRDG++IV+SSYDGL
Sbjct:   162 CNFNPQSNLIVSGSFDESVRIWDVRTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGL 221

Query:   166 YRILDAST 173
              RI D ++
Sbjct:   222 CRIWDTAS 229

GO:0005671 "Ada2/Gcn5/Ada3 transcription activator complex" evidence=IPI

GO:0006338 "chromatin remodeling" evidence=IDA

GO:0004402 "histone acetyltransferase activity" evidence=IDA

GO:0016573 "histone acetylation" evidence=IDA

GO:0005875 "microtubule associated complex" evidence=IDA

GO:0007095 "mitotic G2 DNA damage checkpoint" evidence=IGI

GO:0048188 "Set1C/COMPASS complex" evidence=IDA

GO:0022008 "neurogenesis" evidence=IMP

GO:0051568 "histone H3-K4 methylation" evidence=IMP;IDA

GO:0044665 "MLL1/2 complex" evidence=ISS

GO:0044666 "MLL3/4 complex" evidence=IDA

UNIPROTKB|Q5M786 wdr5 "WD repeat-containing protein 5" [Xenopus (Silurana) tropicalis (taxid:8364)]

 Score = 436 (158.5 bits), Expect = 4.6e-41, P = 4.6e-41
 Identities = 93/176 (52%), Positives = 119/176 (67%)

Query:    13 YTLTQTLNGHLRAVSYVKFSHDGRLLTSSSAEKTLLTYSLSSISNFDSTPPSPLQKFTGH 72
             YTL  TL GH +AVS VKFS +G  L SSSA+K +  +       F+ T        +GH
Sbjct:    35 YTLKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYD-GKFEKT-------ISGH 86

Query:    73 EQGISDLA---------------TIRLWDVPTATSLKTLIGHTNYVFCINFNPQSNRIVS 117
             + GISD+A               T+++WDV +   LKTL GH+NYVFC NFNPQSN IVS
Sbjct:    87 KLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVS 146

Query:   118 DTFNETIRIWDIKTGKCLKVLPAHSDPVTAIDFNRDGTMIVTSSYDGLYRILDAST 173
              +F+E++RIWD+KTGKCLK LPAHSDPV+A+ FNRDG++IV+SSYDGL RI D ++
Sbjct:   147 GSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTAS 202

GO:0000123 "histone acetyltransferase complex" evidence=ISS

GO:0034968 "histone lysine methylation" evidence=ISS

GO:0035064 "methylated histone residue binding" evidence=ISS

GO:0043981 "histone H4-K5 acetylation" evidence=ISS

GO:0043982 "histone H4-K8 acetylation" evidence=ISS

GO:0043984 "histone H4-K16 acetylation" evidence=ISS

GO:0071339 "MLL1 complex" evidence=ISS

GO:0043995 "histone acetyltransferase activity (H4-K5 specific)" evidence=ISS

GO:0043996 "histone acetyltransferase activity (H4-K8 specific)" evidence=ISS

GO:0046972 "histone acetyltransferase activity (H4-K16 specific)" evidence=ISS

UNIPROTKB|G3N3E5 WDR5 "WD repeat-containing protein 5" [Bos taurus (taxid:9913)]

 Score = 431 (156.8 bits), Expect = 1.6e-40, P = 1.6e-40
 Identities = 92/176 (52%), Positives = 118/176 (67%)

Query:    13 YTLTQTLNGHLRAVSYVKFSHDGRLLTSSSAEKTLLTYSLSSISNFDSTPPSPLQKFTGH 72
             Y L  TL GH +AVS VKFS +G  L SSSA+K +  +       F+ T        +GH
Sbjct:     9 YALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYD-GKFEKT-------ISGH 60

Query:    73 EQGISDLA---------------TIRLWDVPTATSLKTLIGHTNYVFCINFNPQSNRIVS 117
             + GISD+A               T+++WDV +   LKTL GH+NYVFC NFNPQSN IVS
Sbjct:    61 KLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVS 120

Query:   118 DTFNETIRIWDIKTGKCLKVLPAHSDPVTAIDFNRDGTMIVTSSYDGLYRILDAST 173
              +F+E++RIWD+KTGKCLK LPAHSDPV+A+ FNRDG++IV+SSYDGL RI D ++
Sbjct:   121 GSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTAS 176

GO:0071339 "MLL1 complex" evidence=IEA

GO:0048188 "Set1C/COMPASS complex" evidence=IEA

GO:0046972 "histone acetyltransferase activity (H4-K16 specific)" evidence=IEA

GO:0043996 "histone acetyltransferase activity (H4-K8 specific)" evidence=IEA

GO:0043995 "histone acetyltransferase activity (H4-K5 specific)" evidence=IEA

GO:0043966 "histone H3 acetylation" evidence=IEA

GO:0042800 "histone methyltransferase activity (H3-K4 specific)" evidence=IEA

GO:0005671 "Ada2/Gcn5/Ada3 transcription activator complex" evidence=IEA

GO:0001501 "skeletal system development" evidence=IEA

UNIPROTKB|Q2KIG2 WDR5 "WD repeat-containing protein 5" [Bos taurus (taxid:9913)]

 Score = 431 (156.8 bits), Expect = 1.6e-40, P = 1.6e-40
 Identities = 92/176 (52%), Positives = 118/176 (67%)

Query:    13 YTLTQTLNGHLRAVSYVKFSHDGRLLTSSSAEKTLLTYSLSSISNFDSTPPSPLQKFTGH 72
             Y L  TL GH +AVS VKFS +G  L SSSA+K +  +       F+ T        +GH
Sbjct:    35 YALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYD-GKFEKT-------ISGH 86

Query:    73 EQGISDLA---------------TIRLWDVPTATSLKTLIGHTNYVFCINFNPQSNRIVS 117
             + GISD+A               T+++WDV +   LKTL GH+NYVFC NFNPQSN IVS
Sbjct:    87 KLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVS 146

Query:   118 DTFNETIRIWDIKTGKCLKVLPAHSDPVTAIDFNRDGTMIVTSSYDGLYRILDAST 173
              +F+E++RIWD+KTGKCLK LPAHSDPV+A+ FNRDG++IV+SSYDGL RI D ++
Sbjct:   147 GSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTAS 202

GO:0000123 "histone acetyltransferase complex" evidence=ISS

GO:0035064 "methylated histone residue binding" evidence=ISS

GO:0046972 "histone acetyltransferase activity (H4-K16 specific)" evidence=ISS

GO:0043996 "histone acetyltransferase activity (H4-K8 specific)" evidence=ISS

GO:0043995 "histone acetyltransferase activity (H4-K5 specific)" evidence=ISS

GO:0043984 "histone H4-K16 acetylation" evidence=ISS

GO:0043982 "histone H4-K8 acetylation" evidence=ISS

GO:0043981 "histone H4-K5 acetylation" evidence=ISS

GO:0048188 "Set1C/COMPASS complex" evidence=ISS

GO:0035097 "histone methyltransferase complex" evidence=ISS

GO:0051568 "histone H3-K4 methylation" evidence=ISS

GO:0071339 "MLL1 complex" evidence=ISS

GO:0034968 "histone lysine methylation" evidence=ISS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0006351 "transcription, DNA-dependent" evidence=IEA

UNIPROTKB|P61964 WDR5 "WD repeat-containing protein 5" [Homo sapiens (taxid:9606)]

 Score = 431 (156.8 bits), Expect = 1.6e-40, P = 1.6e-40
 Identities = 92/176 (52%), Positives = 118/176 (67%)

Query:    13 YTLTQTLNGHLRAVSYVKFSHDGRLLTSSSAEKTLLTYSLSSISNFDSTPPSPLQKFTGH 72
             Y L  TL GH +AVS VKFS +G  L SSSA+K +  +       F+ T        +GH
Sbjct:    35 YALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYD-GKFEKT-------ISGH 86

Query:    73 EQGISDLA---------------TIRLWDVPTATSLKTLIGHTNYVFCINFNPQSNRIVS 117
             + GISD+A               T+++WDV +   LKTL GH+NYVFC NFNPQSN IVS
Sbjct:    87 KLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVS 146

Query:   118 DTFNETIRIWDIKTGKCLKVLPAHSDPVTAIDFNRDGTMIVTSSYDGLYRILDAST 173
              +F+E++RIWD+KTGKCLK LPAHSDPV+A+ FNRDG++IV+SSYDGL RI D ++
Sbjct:   147 GSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTAS 202

GO:0006351 "transcription, DNA-dependent" evidence=IEA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0001501 "skeletal system development" evidence=IEA

GO:0005515 "protein binding" evidence=IPI

GO:0048188 "Set1C/COMPASS complex" evidence=IDA

GO:0035097 "histone methyltransferase complex" evidence=IDA

GO:0051568 "histone H3-K4 methylation" evidence=IDA

GO:0071339 "MLL1 complex" evidence=IDA

GO:0042800 "histone methyltransferase activity (H3-K4 specific)" evidence=IDA

GO:0043984 "histone H4-K16 acetylation" evidence=IDA

GO:0046972 "histone acetyltransferase activity (H4-K16 specific)" evidence=IDA

GO:0000123 "histone acetyltransferase complex" evidence=IDA

GO:0043981 "histone H4-K5 acetylation" evidence=IDA

GO:0043995 "histone acetyltransferase activity (H4-K5 specific)" evidence=IDA

GO:0043982 "histone H4-K8 acetylation" evidence=IDA

GO:0043996 "histone acetyltransferase activity (H4-K8 specific)" evidence=IDA

GO:0005634 "nucleus" evidence=IDA

GO:0043966 "histone H3 acetylation" evidence=IDA

GO:0005671 "Ada2/Gcn5/Ada3 transcription activator complex" evidence=IDA

UNIPROTKB|F1S034 WDR5 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 431 (156.8 bits), Expect = 1.6e-40, P = 1.6e-40
 Identities = 92/176 (52%), Positives = 118/176 (67%)

Query:    13 YTLTQTLNGHLRAVSYVKFSHDGRLLTSSSAEKTLLTYSLSSISNFDSTPPSPLQKFTGH 72
             Y L  TL GH +AVS VKFS +G  L SSSA+K +  +       F+ T        +GH
Sbjct:    35 YALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYD-GKFEKT-------ISGH 86

Query:    73 EQGISDLA---------------TIRLWDVPTATSLKTLIGHTNYVFCINFNPQSNRIVS 117
             + GISD+A               T+++WDV +   LKTL GH+NYVFC NFNPQSN IVS
Sbjct:    87 KLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVS 146

Query:   118 DTFNETIRIWDIKTGKCLKVLPAHSDPVTAIDFNRDGTMIVTSSYDGLYRILDAST 173
              +F+E++RIWD+KTGKCLK LPAHSDPV+A+ FNRDG++IV+SSYDGL RI D ++
Sbjct:   147 GSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTAS 202

GO:0071339 "MLL1 complex" evidence=IEA

GO:0048188 "Set1C/COMPASS complex" evidence=IEA

GO:0046972 "histone acetyltransferase activity (H4-K16 specific)" evidence=IEA

GO:0043996 "histone acetyltransferase activity (H4-K8 specific)" evidence=IEA

GO:0043995 "histone acetyltransferase activity (H4-K5 specific)" evidence=IEA

GO:0043966 "histone H3 acetylation" evidence=IEA

GO:0042800 "histone methyltransferase activity (H3-K4 specific)" evidence=IEA

GO:0005671 "Ada2/Gcn5/Ada3 transcription activator complex" evidence=IEA

GO:0001501 "skeletal system development" evidence=IEA

MGI|MGI:2155884 Wdr5 "WD repeat domain 5" [Mus musculus (taxid:10090)]

 Score = 431 (156.8 bits), Expect = 1.6e-40, P = 1.6e-40
 Identities = 92/176 (52%), Positives = 118/176 (67%)

Query:    13 YTLTQTLNGHLRAVSYVKFSHDGRLLTSSSAEKTLLTYSLSSISNFDSTPPSPLQKFTGH 72
             Y L  TL GH +AVS VKFS +G  L SSSA+K +  +       F+ T        +GH
Sbjct:    35 YALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYD-GKFEKT-------ISGH 86

Query:    73 EQGISDLA---------------TIRLWDVPTATSLKTLIGHTNYVFCINFNPQSNRIVS 117
             + GISD+A               T+++WDV +   LKTL GH+NYVFC NFNPQSN IVS
Sbjct:    87 KLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVS 146

Query:   118 DTFNETIRIWDIKTGKCLKVLPAHSDPVTAIDFNRDGTMIVTSSYDGLYRILDAST 173
              +F+E++RIWD+KTGKCLK LPAHSDPV+A+ FNRDG++IV+SSYDGL RI D ++
Sbjct:   147 GSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTAS 202

GO:0000123 "histone acetyltransferase complex" evidence=ISO

GO:0001501 "skeletal system development" evidence=IDA

GO:0005515 "protein binding" evidence=IPI

GO:0005622 "intracellular" evidence=IDA

GO:0005634 "nucleus" evidence=ISO;IDA

GO:0005671 "Ada2/Gcn5/Ada3 transcription activator complex" evidence=ISO;IDA

GO:0006351 "transcription, DNA-dependent" evidence=IEA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0016568 "chromatin modification" evidence=IEA

GO:0035097 "histone methyltransferase complex" evidence=ISO

GO:0043966 "histone H3 acetylation" evidence=ISO

GO:0043981 "histone H4-K5 acetylation" evidence=ISO

GO:0043982 "histone H4-K8 acetylation" evidence=ISO

GO:0043984 "histone H4-K16 acetylation" evidence=ISO

GO:0048188 "Set1C/COMPASS complex" evidence=ISO

GO:0051568 "histone H3-K4 methylation" evidence=ISO

GO:0071339 "MLL1 complex" evidence=ISO

RGD|1305159 Wdr5 "WD repeat domain 5" [Rattus norvegicus (taxid:10116)]

 Score = 431 (156.8 bits), Expect = 1.6e-40, P = 1.6e-40
 Identities = 92/176 (52%), Positives = 118/176 (67%)

Query:    13 YTLTQTLNGHLRAVSYVKFSHDGRLLTSSSAEKTLLTYSLSSISNFDSTPPSPLQKFTGH 72
             Y L  TL GH +AVS VKFS +G  L SSSA+K +  +       F+ T        +GH
Sbjct:    35 YALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYD-GKFEKT-------ISGH 86

Query:    73 EQGISDLA---------------TIRLWDVPTATSLKTLIGHTNYVFCINFNPQSNRIVS 117
             + GISD+A               T+++WDV +   LKTL GH+NYVFC NFNPQSN IVS
Sbjct:    87 KLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVS 146

Query:   118 DTFNETIRIWDIKTGKCLKVLPAHSDPVTAIDFNRDGTMIVTSSYDGLYRILDAST 173
              +F+E++RIWD+KTGKCLK LPAHSDPV+A+ FNRDG++IV+SSYDGL RI D ++
Sbjct:   147 GSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTAS 202

GO:0000123 "histone acetyltransferase complex" evidence=ISO;ISS

GO:0001501 "skeletal system development" evidence=IEA;ISO

GO:0005622 "intracellular" evidence=ISO

GO:0005634 "nucleus" evidence=ISO

GO:0005671 "Ada2/Gcn5/Ada3 transcription activator complex" evidence=IEA;ISO

GO:0006351 "transcription, DNA-dependent" evidence=IEA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0034968 "histone lysine methylation" evidence=ISS

GO:0035064 "methylated histone residue binding" evidence=ISS

GO:0035097 "histone methyltransferase complex" evidence=ISO;ISS

GO:0042800 "histone methyltransferase activity (H3-K4 specific)" evidence=IEA;ISO

GO:0043966 "histone H3 acetylation" evidence=IEA;ISO

GO:0043981 "histone H4-K5 acetylation" evidence=ISO;ISS

GO:0043982 "histone H4-K8 acetylation" evidence=ISO;ISS

GO:0043984 "histone H4-K16 acetylation" evidence=ISO;ISS

GO:0043995 "histone acetyltransferase activity (H4-K5 specific)" evidence=ISO;ISS

GO:0043996 "histone acetyltransferase activity (H4-K8 specific)" evidence=ISO;ISS

GO:0046972 "histone acetyltransferase activity (H4-K16 specific)" evidence=ISO;ISS

GO:0048188 "Set1C/COMPASS complex" evidence=ISO;ISS

GO:0051568 "histone H3-K4 methylation" evidence=ISO;ISS

GO:0071339 "MLL1 complex" evidence=ISO;ISS

UNIPROTKB|A8X8C6 tag-125 "WD repeat-containing protein tag-125" [Caenorhabditis briggsae (taxid:6238)]

 Score = 414 (150.8 bits), Expect = 9.9e-39, P = 9.9e-39
 Identities = 85/182 (46%), Positives = 122/182 (67%)

Query:    13 YTLTQTLNGHLRAVSYVKFSHDGRLLTSSSAEKTLLTYSLSSISNFDSTPPSPLQKFTGH 72
             Y L  T+ GH +++S VKFS  G+ L +SSA+KT+  +++S +S  + T        TGH
Sbjct:    69 YKLISTIEGHTKSISAVKFSPCGKFLGTSSADKTVKIWNMSDLS-CERT-------LTGH 120

Query:    73 EQGISDLA---------------TIRLWDVPTATSLKTLIGHTNYVFCINFNPQSNRIVS 117
             + G++D A               T+++++VPT    KTL GHTNYVFC NFNPQS+ +VS
Sbjct:   121 KLGVNDFAWSADSKSIVTASDDKTLKIYEVPTVKMAKTLKGHTNYVFCCNFNPQSSLVVS 180

Query:   118 DTFNETIRIWDIKTGKCLKVLPAHSDPVTAIDFNRDGTMIVTSSYDGLYRILDASTPNGK 177
              +F+E++RIWD++TG C+K LPAHSDPV+A+ FNRDG++I + SYDGL RI D  T NG+
Sbjct:   181 GSFDESVRIWDVRTGMCVKTLPAHSDPVSAVSFNRDGSLITSGSYDGLVRIWD--TANGQ 238

Query:   178 FI 179
              +
Sbjct:   239 CV 240

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input:
	fgenesh4_pg.C_LG_V000639	hypothetical protein (317 aa)
		(Populus trichocarpa)
Predicted Functional Partners:
	gw1.XVI.3725.1	annotation not avaliable (120 aa)			•						0.454

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	262
cd00200	289	cd00200, WD40, WD40 domain, found in a number of e	5e-46
cd00200	289	cd00200, WD40, WD40 domain, found in a number of e	6e-43
cd00200	289	cd00200, WD40, WD40 domain, found in a number of e	8e-35
COG2319	466	COG2319, COG2319, FOG: WD40 repeat [General functi	6e-17
COG2319	466	COG2319, COG2319, FOG: WD40 repeat [General functi	2e-16
cd00200	289	cd00200, WD40, WD40 domain, found in a number of e	4e-14
COG2319	466	COG2319, COG2319, FOG: WD40 repeat [General functi	1e-11
PTZ00421	493	PTZ00421, PTZ00421, coronin; Provisional	2e-11
COG2319	466	COG2319, COG2319, FOG: WD40 repeat [General functi	5e-11
smart00320	40	smart00320, WD40, WD40 repeats	5e-07
pfam00400	39	pfam00400, WD40, WD domain, G-beta repeat	2e-06
smart00320	40	smart00320, WD40, WD40 repeats	1e-04
pfam00400	39	pfam00400, WD40, WD domain, G-beta repeat	4e-04
PLN00181	793	PLN00181, PLN00181, protein SPA1-RELATED; Provisio	4e-04

>gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment

 Score =  155 bits (393), Expect = 5e-46
 Identities = 86/278 (30%), Positives = 131/278 (47%), Gaps = 67/278 (24%)

Query: 15  LTQTLNGHLRAVSYVKFSHDGRLLTSSSAEKTLLTYSLSSISNFDSTPPSPLQKFTGHEQ 74
           L +TL GH   V+ V FS DG+LL + S + T+  +        D      L+   GH  
Sbjct: 1   LRRTLKGHTGGVTCVAFSPDGKLLATGSGDGTIKVW--------DLETGELLRTLKGHTG 52

Query: 75  GISDLA---------------TIRLWDVPTATSLKTLIGHTNYVFCINFNPQSNRIVSDT 119
            + D+A               TIRLWD+ T   ++TL GHT+YV  + F+P    + S +
Sbjct: 53  PVRDVAASADGTYLASGSSDKTIRLWDLETGECVRTLTGHTSYVSSVAFSPDGRILSSSS 112

Query: 120 FNETIRIWDIKTGKCLKVLPAHSDPVTAIDFNRDGTMIVTSSYDGLYRILDAST------ 173
            ++TI++WD++TGKCL  L  H+D V ++ F+ DGT + +SS DG  ++ D  T      
Sbjct: 113 RDKTIKVWDVETGKCLTTLRGHTDWVNSVAFSPDGTFVASSSQDGTIKLWDLRTGKCVAT 172

Query: 174 --------------PNGKFILVGTLDNTLRLWNYSTRKILKTYSGYTNSKYCISSTFSVT 219
                         P+G+ +L  + D T++LW+ ST K L T  G               
Sbjct: 173 LTGHTGEVNSVAFSPDGEKLLSSSSDGTIKLWDLSTGKCLGTLRG--------------- 217

Query: 220 NGKYIVSHRDPVISVASHPAKNIIASGALDNDRTMKIW 257
                  H + V SVA  P   ++ASG    D T+++W
Sbjct: 218 -------HENGVNSVAFSPDGYLLASG--SEDGTIRVW 246

Length = 289

>gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment

 Score =  147 bits (372), Expect = 6e-43
 Identities = 81/279 (29%), Positives = 129/279 (46%), Gaps = 67/279 (24%)

Query: 14  TLTQTLNGHLRAVSYVKFSHDGRLLTSSSAEKTLLTYSLSSISNFDSTPPSPLQKFTGHE 73
            L +TL GH   V  V  S DG  L S S++KT+  + L +           ++  TGH 
Sbjct: 42  ELLRTLKGHTGPVRDVAASADGTYLASGSSDKTIRLWDLET--------GECVRTLTGHT 93

Query: 74  QGISDLA---------------TIRLWDVPTATSLKTLIGHTNYVFCINFNPQSNRIVSD 118
             +S +A               TI++WDV T   L TL GHT++V  + F+P    + S 
Sbjct: 94  SYVSSVAFSPDGRILSSSSRDKTIKVWDVETGKCLTTLRGHTDWVNSVAFSPDGTFVASS 153

Query: 119 TFNETIRIWDIKTGKCLKVLPAHSDPVTAIDFNRDGTMIVTSSYDGLYRILDAST----- 173
           + + TI++WD++TGKC+  L  H+  V ++ F+ DG  +++SS DG  ++ D ST     
Sbjct: 154 SQDGTIKLWDLRTGKCVATLTGHTGEVNSVAFSPDGEKLLSSSSDGTIKLWDLSTGKCLG 213

Query: 174 ---------------PNGKFILVGTLDNTLRLWNYSTRKILKTYSGYTNSKYCISSTFSV 218
                          P+G  +  G+ D T+R+W+  T + ++T SG              
Sbjct: 214 TLRGHENGVNSVAFSPDGYLLASGSEDGTIRVWDLRTGECVQTLSG-------------- 259

Query: 219 TNGKYIVSHRDPVISVASHPAKNIIASGALDNDRTMKIW 257
                   H + V S+A  P    +ASG+ D   T++IW
Sbjct: 260 --------HTNSVTSLAWSPDGKRLASGSADG--TIRIW 288

Length = 289

>gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment

 Score =  125 bits (317), Expect = 8e-35
 Identities = 56/184 (30%), Positives = 90/184 (48%), Gaps = 25/184 (13%)

Query: 2   SSDRS--LESFRPYTLTQTLNGHLRAVSYVKFSHDGRLLTSSSAEKTLLTYSLSSISNFD 59
           S D++  +          TL GH   V+ V FS DG  + SSS + T+  + L +     
Sbjct: 112 SRDKTIKVWDVETGKCLTTLRGHTDWVNSVAFSPDGTFVASSSQDGTIKLWDLRTGK--- 168

Query: 60  STPPSPLQKFTGHEQGISDLA---------------TIRLWDVPTATSLKTLIGHTNYVF 104
                 +   TGH   ++ +A               TI+LWD+ T   L TL GH N V 
Sbjct: 169 -----CVATLTGHTGEVNSVAFSPDGEKLLSSSSDGTIKLWDLSTGKCLGTLRGHENGVN 223

Query: 105 CINFNPQSNRIVSDTFNETIRIWDIKTGKCLKVLPAHSDPVTAIDFNRDGTMIVTSSYDG 164
            + F+P    + S + + TIR+WD++TG+C++ L  H++ VT++ ++ DG  + + S DG
Sbjct: 224 SVAFSPDGYLLASGSEDGTIRVWDLRTGECVQTLSGHTNSVTSLAWSPDGKRLASGSADG 283

Query: 165 LYRI 168
             RI
Sbjct: 284 TIRI 287

Length = 289

>gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only]

 Score = 79.7 bits (195), Expect = 6e-17
 Identities = 79/315 (25%), Positives = 144/315 (45%), Gaps = 59/315 (18%)

Query: 1   MSSDRSLESFRPYTLTQTLNGHLRAVSYVKFSHDGRLLTSSSAEKTLLTYSLSS----IS 56
           ++         P   +  L GH  +++ + FS DG LL S S++ T+  + L +    I 
Sbjct: 43  LALLSDSLVSLPDLSSLLLRGHEDSITSIAFSPDGELLLSGSSDGTIKLWDLDNGEKLIK 102

Query: 57  NFDSTPPSPLQKFTGHEQGISDLA--------TIRLWDVPTATS-LKTLIGHTNYVFCIN 107
           + +    S + K        + +         T++LWD+ T    ++TL GH+  V  + 
Sbjct: 103 SLEGLHDSSVSKLALSSPDGNSILLASSSLDGTVKLWDLSTPGKLIRTLEGHSESVTSLA 162

Query: 108 FNPQSNRIVS-DTFNETIRIWDIKTGKCLKVLPAHSDPVTAIDFNRDGT-MIVTSSYDGL 165
           F+P    + S  + + TI++WD++TGK L  L  H+DPV+++ F+ DG  +I + S DG 
Sbjct: 163 FSPDGKLLASGSSLDGTIKLWDLRTGKPLSTLAGHTDPVSSLAFSPDGGLLIASGSSDGT 222

Query: 166 YRILDAST--------------------PNGKFILVGTLDNTLRLWNY-STRKILKTYSG 204
            R+ D ST                    P+G  +  G+ D T+RLW+  S+  +L+T SG
Sbjct: 223 IRLWDLSTGKLLRSTLSGHSDSVVSSFSPDGSLLASGSSDGTIRLWDLRSSSSLLRTLSG 282

Query: 205 YTNSKYCIS----------------------STFSVTNGKYIVSHRDPVISVASHPAKNI 242
           +++S   ++                       T  + +   +  H  PV S++  P  ++
Sbjct: 283 HSSSVLSVAFSPDGKLLASGSSDGTVRLWDLETGKLLSSLTLKGHEGPVSSLSFSPDGSL 342

Query: 243 IASGALDNDRTMKIW 257
           + SG   +D T+++W
Sbjct: 343 LVSGG-SDDGTIRLW 356

Length = 466

>gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only]

 Score = 77.8 bits (190), Expect = 2e-16
 Identities = 85/306 (27%), Positives = 134/306 (43%), Gaps = 70/306 (22%)

Query: 12  PYTLTQTLNGHLRAVSYVKFSHDGRLLTSSSAEKTLLTYSLSSISNFDSTPPSPLQKFTG 71
           P  L +TL GH  +V+ + FS DG+LL S S+          +I  +D     PL    G
Sbjct: 144 PGKLIRTLEGHSESVTSLAFSPDGKLLASGSSLD-------GTIKLWDLRTGKPLSTLAG 196

Query: 72  HEQGISDLA----------------TIRLWDVPTATSLK-TLIGHTNYVFCINFNPQSNR 114
           H   +S LA                TIRLWD+ T   L+ TL GH++ V    F+P  + 
Sbjct: 197 HTDPVSSLAFSPDGGLLIASGSSDGTIRLWDLSTGKLLRSTLSGHSDSVVSS-FSPDGSL 255

Query: 115 IVSDTFNETIRIWDIKTGK-CLKVLPAHSDPVTAIDFNRDGTMIVTSSYDGLYRILDAST 173
           + S + + TIR+WD+++    L+ L  HS  V ++ F+ DG ++ + S DG  R+ D  T
Sbjct: 256 LASGSSDGTIRLWDLRSSSSLLRTLSGHSSSVLSVAFSPDGKLLASGSSDGTVRLWDLET 315

Query: 174 ----------------------PNGKFILVG-TLDNTLRLWNYSTRKILKTYSGYTNSK- 209
                                 P+G  ++ G + D T+RLW+  T K LKT  G++N   
Sbjct: 316 GKLLSSLTLKGHEGPVSSLSFSPDGSLLVSGGSDDGTIRLWDLRTGKPLKTLEGHSNVLS 375

Query: 210 ------------------YCISSTFSVTNGKYIVSHRDPVISVASHPAKNIIASGALDND 251
                               +    + +  + +  H   V S+   P    +ASG+ DN 
Sbjct: 376 VSFSPDGRVVSSGSTDGTVRLWDLSTGSLLRNLDGHTSRVTSLDFSPDGKSLASGSSDN- 434

Query: 252 RTMKIW 257
            T+++W
Sbjct: 435 -TIRLW 439

Length = 466

>gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment

 Score = 70.1 bits (172), Expect = 4e-14
 Identities = 45/129 (34%), Positives = 64/129 (49%), Gaps = 23/129 (17%)

Query: 15  LTQTLNGHLRAVSYVKFSHDGRLLTSSSAEKTLLTYSLSSISNFDSTPPSPLQKFTGHEQ 74
              TL GH   V+ V FS DG  L SSS++ T+  + LS+           L    GHE 
Sbjct: 169 CVATLTGHTGEVNSVAFSPDGEKLLSSSSDGTIKLWDLST--------GKCLGTLRGHEN 220

Query: 75  GISDLA---------------TIRLWDVPTATSLKTLIGHTNYVFCINFNPQSNRIVSDT 119
           G++ +A               TIR+WD+ T   ++TL GHTN V  + ++P   R+ S +
Sbjct: 221 GVNSVAFSPDGYLLASGSEDGTIRVWDLRTGECVQTLSGHTNSVTSLAWSPDGKRLASGS 280

Query: 120 FNETIRIWD 128
            + TIRIWD
Sbjct: 281 ADGTIRIWD 289

Length = 289

>gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only]

 Score = 64.0 bits (154), Expect = 1e-11
 Identities = 73/219 (33%), Positives = 107/219 (48%), Gaps = 47/219 (21%)

Query: 15  LTQTLNGHLRAVSYVKFSHDGRLLTSSSAEKTLLTYSLSSISNFDSTPPSPLQKFTGHEQ 74
           L  TL+GH  +V    FS DG LL S S++ T+  + L S S       S L+  +GH  
Sbjct: 234 LRSTLSGHSDSVVSS-FSPDGSLLASGSSDGTIRLWDLRSSS-------SLLRTLSGHSS 285

Query: 75  GISDLA---------------TIRLWDVPT--ATSLKTLIGHTNYVFCINFNPQSNRIV- 116
            +  +A               T+RLWD+ T    S  TL GH   V  ++F+P  + +V 
Sbjct: 286 SVLSVAFSPDGKLLASGSSDGTVRLWDLETGKLLSSLTLKGHEGPVSSLSFSPDGSLLVS 345

Query: 117 SDTFNETIRIWDIKTGKCLKVLPAHSDPVTAIDFNRDGTMIVTSSYDGLYRILDAST--- 173
             + + TIR+WD++TGK LK L  HS  V ++ F+ DG ++ + S DG  R+ D ST   
Sbjct: 346 GGSDDGTIRLWDLRTGKPLKTLEGHS-NVLSVSFSPDGRVVSSGSTDGTVRLWDLSTGSL 404

Query: 174 -----------------PNGKFILVGTLDNTLRLWNYST 195
                            P+GK +  G+ DNT+RLW+  T
Sbjct: 405 LRNLDGHTSRVTSLDFSPDGKSLASGSSDNTIRLWDLKT 443

Length = 466

>gnl|CDD|173611 PTZ00421, PTZ00421, coronin; Provisional

 Score = 63.0 bits (153), Expect = 2e-11
 Identities = 36/121 (29%), Positives = 64/121 (52%), Gaps = 15/121 (12%)

Query: 58  FDSTPPSPLQKFTGHEQGISDLATIRLWDVP-------TATSLKTLIGHTNYVFCINFNP 110
           F+   P  L  FT  E G     TI  W +P        +  +  L GHT  V  ++F+P
Sbjct: 83  FNPFDPQKL--FTASEDG-----TIMGWGIPEEGLTQNISDPIVHLQGHTKKVGIVSFHP 135

Query: 111 QSNRIV-SDTFNETIRIWDIKTGKCLKVLPAHSDPVTAIDFNRDGTMIVTSSYDGLYRIL 169
            +  ++ S   +  + +WD++ GK ++V+  HSD +T++++N DG+++ T+S D    I+
Sbjct: 136 SAMNVLASAGADMVVNVWDVERGKAVEVIKCHSDQITSLEWNLDGSLLCTTSKDKKLNII 195

Query: 170 D 170
           D
Sbjct: 196 D 196

Length = 493

>gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only]

 Score = 62.0 bits (149), Expect = 5e-11
 Identities = 61/177 (34%), Positives = 92/177 (51%), Gaps = 23/177 (12%)

Query: 13  YTLTQTLNGHLRAVSYVKFSHDGRLLTSSSAEKTLLTYSLSSISNFDSTPPSPLQKFTGH 72
            +L +TL+GH  +V  V FS DG+LL S S++ T+  + L +     S          GH
Sbjct: 274 SSLLRTLSGHSSSVLSVAFSPDGKLLASGSSDGTVRLWDLETGKLLSSL------TLKGH 327

Query: 73  EQGISDLA----------------TIRLWDVPTATSLKTLIGHTNYVFCINFNPQSNRIV 116
           E  +S L+                TIRLWD+ T   LKTL GH+N V  ++F+P    + 
Sbjct: 328 EGPVSSLSFSPDGSLLVSGGSDDGTIRLWDLRTGKPLKTLEGHSN-VLSVSFSPDGRVVS 386

Query: 117 SDTFNETIRIWDIKTGKCLKVLPAHSDPVTAIDFNRDGTMIVTSSYDGLYRILDAST 173
           S + + T+R+WD+ TG  L+ L  H+  VT++DF+ DG  + + S D   R+ D  T
Sbjct: 387 SGSTDGTVRLWDLSTGSLLRNLDGHTSRVTSLDFSPDGKSLASGSSDNTIRLWDLKT 443

Length = 466

>gnl|CDD|197651 smart00320, WD40, WD40 repeats

 Score = 45.0 bits (107), Expect = 5e-07
 Identities = 15/40 (37%), Positives = 25/40 (62%)

Query: 131 TGKCLKVLPAHSDPVTAIDFNRDGTMIVTSSYDGLYRILD 170
           +G+ LK L  H+ PVT++ F+ DG  + + S DG  ++ D
Sbjct: 1   SGELLKTLKGHTGPVTSVAFSPDGKYLASGSDDGTIKLWD 40

Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain. Length = 40

>gnl|CDD|201208 pfam00400, WD40, WD domain, G-beta repeat

 Score = 43.5 bits (103), Expect = 2e-06
 Identities = 15/37 (40%), Positives = 24/37 (64%)

Query: 132 GKCLKVLPAHSDPVTAIDFNRDGTMIVTSSYDGLYRI 168
           GK L+ L  H+ PVT++ F+ DG ++ + S DG  R+
Sbjct: 1   GKLLRTLKGHTGPVTSVAFSPDGNLLASGSDDGTVRV 37

Length = 39

>gnl|CDD|197651 smart00320, WD40, WD40 repeats

 Score = 38.1 bits (89), Expect = 1e-04
 Identities = 15/40 (37%), Positives = 23/40 (57%)

Query: 89  TATSLKTLIGHTNYVFCINFNPQSNRIVSDTFNETIRIWD 128
           +   LKTL GHT  V  + F+P    + S + + TI++WD
Sbjct: 1   SGELLKTLKGHTGPVTSVAFSPDGKYLASGSDDGTIKLWD 40

Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain. Length = 40

>gnl|CDD|201208 pfam00400, WD40, WD domain, G-beta repeat

 Score = 36.9 bits (86), Expect = 4e-04
 Identities = 15/38 (39%), Positives = 23/38 (60%)

Query: 91  TSLKTLIGHTNYVFCINFNPQSNRIVSDTFNETIRIWD 128
             L+TL GHT  V  + F+P  N + S + + T+R+WD
Sbjct: 2   KLLRTLKGHTGPVTSVAFSPDGNLLASGSDDGTVRVWD 39

Length = 39

>gnl|CDD|177776 PLN00181, PLN00181, protein SPA1-RELATED; Provisional

 Score = 41.2 bits (96), Expect = 4e-04
 Identities = 26/56 (46%), Positives = 32/56 (57%), Gaps = 5/56 (8%)

Query: 18  TLNGHLRAVSYVKFSHDGRLLTSSSAEKTLLTYSLS-SISNFDSTPPSPLQKFTGH 72
           T+ GH + VSYV+F  D   L SSS + TL  + LS SIS  + T   PL  F GH
Sbjct: 656 TMIGHSKTVSYVRFV-DSSTLVSSSTDNTLKLWDLSMSISGINET---PLHSFMGH 707

Length = 793

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	262
KOG0272	459	consensus U4/U6 small nuclear ribonucleoprotein Pr	100.0
KOG0271	480	consensus Notchless-like WD40 repeat-containing pr	100.0
KOG0286	343	consensus G-protein beta subunit [General function	100.0
KOG0271	480	consensus Notchless-like WD40 repeat-containing pr	100.0
KOG0272	459	consensus U4/U6 small nuclear ribonucleoprotein Pr	100.0
KOG0279	315	consensus G protein beta subunit-like protein [Sig	100.0
KOG0263	707	consensus Transcription initiation factor TFIID, s	100.0
KOG0279	315	consensus G protein beta subunit-like protein [Sig	100.0
KOG0315	311	consensus G-protein beta subunit-like protein (con	100.0
KOG0286	343	consensus G-protein beta subunit [General function	100.0
KOG0318	603	consensus WD40 repeat stress protein/actin interac	100.0
KOG0284	464	consensus Polyadenylation factor I complex, subuni	100.0
KOG0291	893	consensus WD40-repeat-containing subunit of the 18	100.0
KOG0285	460	consensus Pleiotropic regulator 1 [RNA processing	100.0
KOG0263	707	consensus Transcription initiation factor TFIID, s	100.0
KOG0295	406	consensus WD40 repeat-containing protein [Function	100.0
KOG0282	503	consensus mRNA splicing factor [Function unknown]	100.0
KOG0276	794	consensus Vesicle coat complex COPI, beta' subunit	100.0
KOG0293	519	consensus WD40 repeat-containing protein [Function	100.0
KOG0316	307	consensus Conserved WD40 repeat-containing protein	100.0
KOG0283	712	consensus WD40 repeat-containing protein [Function	100.0
KOG0291	893	consensus WD40-repeat-containing subunit of the 18	100.0
KOG0295	406	consensus WD40 repeat-containing protein [Function	100.0
KOG0273	524	consensus Beta-transducin family (WD-40 repeat) pr	100.0
KOG0319	775	consensus WD40-repeat-containing subunit of the 18	100.0
KOG0266	456	consensus WD40 repeat-containing protein [General	100.0
KOG0315	311	consensus G-protein beta subunit-like protein (con	100.0
KOG0265	338	consensus U5 snRNP-specific protein-like factor an	100.0
KOG0266	456	consensus WD40 repeat-containing protein [General	100.0
KOG0273	524	consensus Beta-transducin family (WD-40 repeat) pr	100.0
KOG0265	338	consensus U5 snRNP-specific protein-like factor an	100.0
KOG0296	399	consensus Angio-associated migratory cell protein	100.0
KOG0645	312	consensus WD40 repeat protein [General function pr	100.0
KOG0275	508	consensus Conserved WD40 repeat-containing protein	100.0
KOG0292	1202	consensus Vesicle coat complex COPI, alpha subunit	100.0
PLN00181	793	protein SPA1-RELATED; Provisional	100.0
KOG0318	603	consensus WD40 repeat stress protein/actin interac	100.0
KOG0281	499	consensus Beta-TrCP (transducin repeats containing	100.0
PTZ00421	493	coronin; Provisional	100.0
KOG0284	464	consensus Polyadenylation factor I complex, subuni	100.0
cd00200	289	WD40 WD40 domain, found in a number of eukaryotic	100.0
cd00200	289	WD40 WD40 domain, found in a number of eukaryotic	100.0
KOG0292	1202	consensus Vesicle coat complex COPI, alpha subunit	100.0
KOG0643	327	consensus Translation initiation factor 3, subunit	100.0
KOG0278	334	consensus Serine/threonine kinase receptor-associa	100.0
KOG0274	537	consensus Cdc4 and related F-box and WD-40 protein	100.0
KOG0313	423	consensus Microtubule binding protein YTM1 (contai	100.0
KOG0645	312	consensus WD40 repeat protein [General function pr	100.0
KOG1446	311	consensus Histone H3 (Lys4) methyltransferase comp	100.0
PTZ00420	568	coronin; Provisional	100.0
KOG0640	430	consensus mRNA cleavage stimulating factor complex	99.98
KOG1407	313	consensus WD40 repeat protein [Function unknown]	99.98
KOG0294	362	consensus WD40 repeat-containing protein [Function	99.97
KOG0277	311	consensus Peroxisomal targeting signal type 2 rece	99.97
KOG0316	307	consensus Conserved WD40 repeat-containing protein	99.97
KOG0305	484	consensus Anaphase promoting complex, Cdc20, Cdh1,	99.97
KOG0276	794	consensus Vesicle coat complex COPI, beta' subunit	99.97
KOG0277	311	consensus Peroxisomal targeting signal type 2 rece	99.97
PLN00181	793	protein SPA1-RELATED; Provisional	99.97
KOG2096	420	consensus WD40 repeat protein [General function pr	99.97
KOG0306	888	consensus WD40-repeat-containing subunit of the 18	99.97
KOG0319	775	consensus WD40-repeat-containing subunit of the 18	99.97
KOG0313	423	consensus Microtubule binding protein YTM1 (contai	99.97
KOG0281	499	consensus Beta-TrCP (transducin repeats containing	99.97
KOG0288	459	consensus WD40 repeat protein TipD [General functi	99.97
KOG0268	433	consensus Sof1-like rRNA processing protein (conta	99.96
KOG0306	888	consensus WD40-repeat-containing subunit of the 18	99.96
KOG0973	942	consensus Histone transcription regulator HIRA, WD	99.96
KOG0310	487	consensus Conserved WD40 repeat-containing protein	99.96
KOG0772	641	consensus Uncharacterized conserved protein, conta	99.96
KOG0264	422	consensus Nucleosome remodeling factor, subunit CA	99.96
KOG1332	299	consensus Vesicle coat complex COPII, subunit SEC1	99.96
KOG0647	347	consensus mRNA export protein (contains WD40 repea	99.96
KOG0285	460	consensus Pleiotropic regulator 1 [RNA processing	99.96
KOG0289	506	consensus mRNA splicing factor [General function p	99.96
KOG0641	350	consensus WD40 repeat protein [General function pr	99.96
KOG0299	479	consensus U3 snoRNP-associated protein (contains W	99.96
PTZ00421	493	coronin; Provisional	99.96
KOG0308	735	consensus Conserved WD40 repeat-containing protein	99.96
KOG0288	459	consensus WD40 repeat protein TipD [General functi	99.96
KOG0300	481	consensus WD40 repeat-containing protein [Function	99.96
KOG0646	476	consensus WD40 repeat protein [General function pr	99.95
KOG1036	323	consensus Mitotic spindle checkpoint protein BUB3,	99.95
KOG0289	506	consensus mRNA splicing factor [General function p	99.95
KOG0301	745	consensus Phospholipase A2-activating protein (con	99.95
KOG0973	942	consensus Histone transcription regulator HIRA, WD	99.95
KOG0282	503	consensus mRNA splicing factor [Function unknown]	99.95
KOG1274	933	consensus WD40 repeat protein [General function pr	99.95
PTZ00420	568	coronin; Provisional	99.95
KOG0274	537	consensus Cdc4 and related F-box and WD-40 protein	99.95
KOG0641	350	consensus WD40 repeat protein [General function pr	99.95
KOG0310	487	consensus Conserved WD40 repeat-containing protein	99.95
KOG4283	397	consensus Transcription-coupled repair protein CSA	99.95
KOG0299	479	consensus U3 snoRNP-associated protein (contains W	99.94
KOG0308	735	consensus Conserved WD40 repeat-containing protein	99.94
KOG0301	745	consensus Phospholipase A2-activating protein (con	99.94
KOG1446	311	consensus Histone H3 (Lys4) methyltransferase comp	99.94
KOG0264	422	consensus Nucleosome remodeling factor, subunit CA	99.94
KOG1332	299	consensus Vesicle coat complex COPII, subunit SEC1	99.94
KOG1408	1080	consensus WD40 repeat protein [Function unknown]	99.94
KOG2445	361	consensus Nuclear pore complex component (sc Seh1)	99.94
KOG0643	327	consensus Translation initiation factor 3, subunit	99.93
KOG0267	825	consensus Microtubule severing protein katanin p80	99.93
KOG2055	514	consensus WD40 repeat protein [General function pr	99.93
KOG0268	433	consensus Sof1-like rRNA processing protein (conta	99.93
KOG0302	440	consensus Ribosome Assembly protein [General funct	99.93
KOG0269	839	consensus WD40 repeat-containing protein [Function	99.93
KOG0300	481	consensus WD40 repeat-containing protein [Function	99.93
KOG0639	705	consensus Transducin-like enhancer of split protei	99.93
KOG0296	399	consensus Angio-associated migratory cell protein	99.93
KOG0267	825	consensus Microtubule severing protein katanin p80	99.93
KOG0270	463	consensus WD40 repeat-containing protein [Function	99.93
KOG0642	577	consensus Cell-cycle nuclear protein, contains WD-	99.93
KOG0269	839	consensus WD40 repeat-containing protein [Function	99.93
KOG1539	910	consensus WD repeat protein [General function pred	99.92
TIGR03866	300	PQQ_ABC_repeats PQQ-dependent catabolism-associate	99.92
KOG1273	405	consensus WD40 repeat protein [General function pr	99.92
KOG1036	323	consensus Mitotic spindle checkpoint protein BUB3,	99.92
KOG2048	691	consensus WD40 repeat protein [General function pr	99.92
KOG0321	720	consensus WD40 repeat-containing protein L2DTL [Fu	99.91
KOG0640	430	consensus mRNA cleavage stimulating factor complex	99.91
KOG0772	641	consensus Uncharacterized conserved protein, conta	99.91
KOG0303	472	consensus Actin-binding protein Coronin, contains	99.91
KOG0647	347	consensus mRNA export protein (contains WD40 repea	99.91
KOG1034	385	consensus Transcriptional repressor EED/ESC/FIE, r	99.91
KOG4283	397	consensus Transcription-coupled repair protein CSA	99.91
KOG4328	498	consensus WD40 protein [Function unknown]	99.91
KOG0639	705	consensus Transducin-like enhancer of split protei	99.91
KOG1273	405	consensus WD40 repeat protein [General function pr	99.91
KOG0646	476	consensus WD40 repeat protein [General function pr	99.91
KOG0275	508	consensus Conserved WD40 repeat-containing protein	99.9
KOG2106	626	consensus Uncharacterized conserved protein, conta	99.9
KOG0305	484	consensus Anaphase promoting complex, Cdc20, Cdh1,	99.9
KOG2106	626	consensus Uncharacterized conserved protein, conta	99.9
KOG0294	362	consensus WD40 repeat-containing protein [Function	99.9
KOG1188	376	consensus WD40 repeat protein [General function pr	99.9
KOG0650	733	consensus WD40 repeat nucleolar protein Bop1, invo	99.89
KOG0322	323	consensus G-protein beta subunit-like protein GNB1	99.89
KOG1407	313	consensus WD40 repeat protein [Function unknown]	99.89
KOG0278	334	consensus Serine/threonine kinase receptor-associa	99.89
KOG0293	519	consensus WD40 repeat-containing protein [Function	99.89
KOG1408	1080	consensus WD40 repeat protein [Function unknown]	99.89
KOG1445	1012	consensus Tumor-specific antigen (contains WD repe	99.89
KOG2919	406	consensus Guanine nucleotide-binding protein [Gene	99.89
KOG0270	463	consensus WD40 repeat-containing protein [Function	99.89
KOG1063	764	consensus RNA polymerase II elongator complex, sub	99.89
KOG1009	434	consensus Chromatin assembly complex 1 subunit B/C	99.88
KOG1274	933	consensus WD40 repeat protein [General function pr	99.88
KOG1063	764	consensus RNA polymerase II elongator complex, sub	99.88
KOG0283	712	consensus WD40 repeat-containing protein [Function	99.88
KOG0302	440	consensus Ribosome Assembly protein [General funct	99.88
KOG2096	420	consensus WD40 repeat protein [General function pr	99.87
KOG0307	1049	consensus Vesicle coat complex COPII, subunit SEC3	99.87
KOG0290	364	consensus Conserved WD40 repeat-containing protein	99.86
KOG1538	1081	consensus Uncharacterized conserved protein WDR10,	99.86
KOG1539	910	consensus WD repeat protein [General function pred	99.86
KOG4378	673	consensus Nuclear protein COP1 [Signal transductio	99.85
KOG1310	758	consensus WD40 repeat protein [General function pr	99.85
KOG0321	720	consensus WD40 repeat-containing protein L2DTL [Fu	99.85
KOG0649	325	consensus WD40 repeat protein [General function pr	99.85
KOG0644	1113	consensus Uncharacterized conserved protein, conta	99.85
KOG0307	1049	consensus Vesicle coat complex COPII, subunit SEC3	99.84
KOG4378	673	consensus Nuclear protein COP1 [Signal transductio	99.84
KOG0771	398	consensus Prolactin regulatory element-binding pro	99.84
KOG1517	1387	consensus Guanine nucleotide binding protein MIP1	99.83
KOG2048	691	consensus WD40 repeat protein [General function pr	99.83
KOG4227	609	consensus WD40 repeat protein [General function pr	99.83
KOG1007	370	consensus WD repeat protein TSSC1, WD repeat super	99.83
KOG1445	1012	consensus Tumor-specific antigen (contains WD repe	99.83
KOG1007	370	consensus WD repeat protein TSSC1, WD repeat super	99.82
KOG4328	498	consensus WD40 protein [Function unknown]	99.82
KOG2110	391	consensus Uncharacterized conserved protein, conta	99.82
TIGR03866	300	PQQ_ABC_repeats PQQ-dependent catabolism-associate	99.81
KOG2445	361	consensus Nuclear pore complex component (sc Seh1)	99.81
KOG2055	514	consensus WD40 repeat protein [General function pr	99.8
COG2319	466	FOG: WD40 repeat [General function prediction only	99.8
KOG1523	361	consensus Actin-related protein Arp2/3 complex, su	99.79
KOG1963	792	consensus WD40 repeat protein [General function pr	99.78
PF08662	194	eIF2A: Eukaryotic translation initiation factor eI	99.78
KOG1334	559	consensus WD40 repeat protein [General function pr	99.77
KOG1524	737	consensus WD40 repeat-containing protein CHE-2 [Ge	99.77
KOG1240	1431	consensus Protein kinase containing WD40 repeats [	99.76
COG2319	466	FOG: WD40 repeat [General function prediction only	99.76
KOG2110	391	consensus Uncharacterized conserved protein, conta	99.76
KOG0303	472	consensus Actin-binding protein Coronin, contains	99.76
KOG1009	434	consensus Chromatin assembly complex 1 subunit B/C	99.75
PRK11028	330	6-phosphogluconolactonase; Provisional	99.75
PRK01742	429	tolB translocation protein TolB; Provisional	99.75
KOG2321	703	consensus WD40 repeat protein [General function pr	99.74
KOG0642	577	consensus Cell-cycle nuclear protein, contains WD-	99.74
KOG0649	325	consensus WD40 repeat protein [General function pr	99.74
KOG2394	636	consensus WD40 protein DMR-N9 [General function pr	99.73
KOG1538	1081	consensus Uncharacterized conserved protein WDR10,	99.73
KOG1188	376	consensus WD40 repeat protein [General function pr	99.72
KOG1524	737	consensus WD40 repeat-containing protein CHE-2 [Ge	99.71
KOG1587	555	consensus Cytoplasmic dynein intermediate chain [C	99.71
KOG0771	398	consensus Prolactin regulatory element-binding pro	99.7
KOG1523	361	consensus Actin-related protein Arp2/3 complex, su	99.69
KOG2111	346	consensus Uncharacterized conserved protein, conta	99.69
KOG1587	555	consensus Cytoplasmic dynein intermediate chain [C	99.68
KOG1517	1387	consensus Guanine nucleotide binding protein MIP1	99.67
KOG1310	758	consensus WD40 repeat protein [General function pr	99.67
KOG1034	385	consensus Transcriptional repressor EED/ESC/FIE, r	99.67
KOG1409	404	consensus Uncharacterized conserved protein, conta	99.66
KOG1963	792	consensus WD40 repeat protein [General function pr	99.65
KOG1272	545	consensus WD40-repeat-containing subunit of the 18	99.65
KOG2394	636	consensus WD40 protein DMR-N9 [General function pr	99.64
KOG0650	733	consensus WD40 repeat nucleolar protein Bop1, invo	99.64
KOG2919	406	consensus Guanine nucleotide-binding protein [Gene	99.64
KOG1272	545	consensus WD40-repeat-containing subunit of the 18	99.64
KOG2139	445	consensus WD40 repeat protein [General function pr	99.63
KOG2111	346	consensus Uncharacterized conserved protein, conta	99.62
KOG0322	323	consensus G-protein beta subunit-like protein GNB1	99.62
PRK03629	429	tolB translocation protein TolB; Provisional	99.62
PRK04922	433	tolB translocation protein TolB; Provisional	99.61
PF02239	369	Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO	99.61
PRK05137	435	tolB translocation protein TolB; Provisional	99.61
KOG0290	364	consensus Conserved WD40 repeat-containing protein	99.6
KOG3881	412	consensus Uncharacterized conserved protein [Funct	99.6
PF08662	194	eIF2A: Eukaryotic translation initiation factor eI	99.6
KOG4547	541	consensus WD40 repeat-containing protein [General	99.58
PRK02889	427	tolB translocation protein TolB; Provisional	99.58
PRK11028	330	6-phosphogluconolactonase; Provisional	99.57
PRK01742	429	tolB translocation protein TolB; Provisional	99.56
KOG1354	433	consensus Serine/threonine protein phosphatase 2A,	99.55
KOG4497	447	consensus Uncharacterized conserved protein WDR8,	99.55
KOG4227	609	consensus WD40 repeat protein [General function pr	99.54
KOG3881	412	consensus Uncharacterized conserved protein [Funct	99.53
KOG1240	1431	consensus Protein kinase containing WD40 repeats [	99.53
KOG0974	967	consensus WD-repeat protein WDR6, WD repeat superf	99.51
KOG4497	447	consensus Uncharacterized conserved protein WDR8,	99.51
KOG2139	445	consensus WD40 repeat protein [General function pr	99.5
TIGR02800	417	propeller_TolB tol-pal system beta propeller repea	99.49
KOG0974	967	consensus WD-repeat protein WDR6, WD repeat superf	99.47
KOG0644	1113	consensus Uncharacterized conserved protein, conta	99.47
PRK05137	435	tolB translocation protein TolB; Provisional	99.45
PRK03629	429	tolB translocation protein TolB; Provisional	99.43
PRK00178	430	tolB translocation protein TolB; Provisional	99.43
KOG4714	319	consensus Nucleoporin [Nuclear structure]	99.43
KOG2315	566	consensus Predicted translation initiation factor	99.43
KOG0280	339	consensus Uncharacterized conserved protein [Amino	99.43
PRK04922	433	tolB translocation protein TolB; Provisional	99.42
KOG4190	1034	consensus Uncharacterized conserved protein [Funct	99.42
PRK02889	427	tolB translocation protein TolB; Provisional	99.41
PRK01029	428	tolB translocation protein TolB; Provisional	99.41
COG4946	668	Uncharacterized protein related to the periplasmic	99.4
KOG1064	2439	consensus RAVE (regulator of V-ATPase assembly) co	99.4
PF02239	369	Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO	99.39
KOG2041	1189	consensus WD40 repeat protein [General function pr	99.36
PRK04792	448	tolB translocation protein TolB; Provisional	99.36
TIGR02800	417	propeller_TolB tol-pal system beta propeller repea	99.35
PF10282	345	Lactonase: Lactonase, 7-bladed beta-propeller; Int	99.34
KOG1064	2439	consensus RAVE (regulator of V-ATPase assembly) co	99.31
KOG1409	404	consensus Uncharacterized conserved protein, conta	99.28
KOG1354	433	consensus Serine/threonine protein phosphatase 2A,	99.24
TIGR02658	352	TTQ_MADH_Hv methylamine dehydrogenase heavy chain.	99.23
PF00400	39	WD40: WD domain, G-beta repeat; InterPro: IPR01978	99.22
PRK00178	430	tolB translocation protein TolB; Provisional	99.22
KOG1334	559	consensus WD40 repeat protein [General function pr	99.2
KOG3914	390	consensus WD repeat protein WDR4 [Function unknown	99.2
PRK01029	428	tolB translocation protein TolB; Provisional	99.19
PF15492	282	Nbas_N: Neuroblastoma-amplified sequence, N termin	99.19
COG2706	346	3-carboxymuconate cyclase [Carbohydrate transport	99.18
KOG0280	339	consensus Uncharacterized conserved protein [Amino	99.17
KOG1912	1062	consensus WD40 repeat protein [General function pr	99.17
COG5170	460	CDC55 Serine/threonine protein phosphatase 2A, reg	99.16
COG5354	561	Uncharacterized protein, contains Trp-Asp (WD) rep	99.16
KOG1275	1118	consensus PAB-dependent poly(A) ribonuclease, subu	99.16
KOG0309	1081	consensus Conserved WD40 repeat-containing protein	99.15
KOG4190	1034	consensus Uncharacterized conserved protein [Funct	99.15
KOG2695	425	consensus WD40 repeat protein [General function pr	99.15
KOG2321	703	consensus WD40 repeat protein [General function pr	99.14
PF04762	928	IKI3: IKI3 family; InterPro: IPR006849 Members of	99.13
PRK04043	419	tolB translocation protein TolB; Provisional	99.13
PRK04792	448	tolB translocation protein TolB; Provisional	99.12
KOG0882	558	consensus Cyclophilin-related peptidyl-prolyl cis-	99.12
KOG3617	1416	consensus WD40 and TPR repeat-containing protein [	99.11
PF00400	39	WD40: WD domain, G-beta repeat; InterPro: IPR01978	99.08
KOG4547	541	consensus WD40 repeat-containing protein [General	99.06
PLN02919	1057	haloacid dehalogenase-like hydrolase family protei	99.06
KOG1645	463	consensus RING-finger-containing E3 ubiquitin liga	99.03
KOG4532	344	consensus WD40-like repeat containing protein [Gen	99.03
PF08450	246	SGL: SMP-30/Gluconolaconase/LRE-like region; Inter	99.02
KOG0309	1081	consensus Conserved WD40 repeat-containing protein	98.99
COG2706	346	3-carboxymuconate cyclase [Carbohydrate transport	98.98
TIGR03300	377	assembly_YfgL outer membrane assembly lipoprotein	98.94
KOG2695	425	consensus WD40 repeat protein [General function pr	98.93
TIGR03300	377	assembly_YfgL outer membrane assembly lipoprotein	98.92
KOG2315	566	consensus Predicted translation initiation factor	98.91
PF04762	928	IKI3: IKI3 family; InterPro: IPR006849 Members of	98.89
KOG2314	698	consensus Translation initiation factor 3, subunit	98.88
KOG1832	1516	consensus HIV-1 Vpr-binding protein [Cell cycle co	98.87
KOG3914	390	consensus WD repeat protein WDR4 [Function unknown	98.87
KOG4532	344	consensus WD40-like repeat containing protein [Gen	98.85
PF10282	345	Lactonase: Lactonase, 7-bladed beta-propeller; Int	98.83
COG4946	668	Uncharacterized protein related to the periplasmic	98.81
TIGR02658	352	TTQ_MADH_Hv methylamine dehydrogenase heavy chain.	98.8
KOG2066	846	consensus Vacuolar assembly/sorting protein VPS41	98.76
PF13360	238	PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A	98.73
KOG4714	319	consensus Nucleoporin [Nuclear structure]	98.73
COG5354	561	Uncharacterized protein, contains Trp-Asp (WD) rep	98.73
PLN02919	1057	haloacid dehalogenase-like hydrolase family protei	98.72
COG5170	460	CDC55 Serine/threonine protein phosphatase 2A, reg	98.71
KOG1912	1062	consensus WD40 repeat protein [General function pr	98.7
PF13360	238	PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A	98.64
KOG1832	1516	consensus HIV-1 Vpr-binding protein [Cell cycle co	98.61
KOG0882	558	consensus Cyclophilin-related peptidyl-prolyl cis-	98.6
KOG3621	726	consensus WD40 repeat-containing protein [General	98.59
PF11768	545	DUF3312: Protein of unknown function (DUF3312); In	98.59
PRK04043	419	tolB translocation protein TolB; Provisional	98.59
PF07433	305	DUF1513: Protein of unknown function (DUF1513); In	98.56
KOG1008	783	consensus Uncharacterized conserved protein, conta	98.56
KOG2041	1189	consensus WD40 repeat protein [General function pr	98.55
PF08596	395	Lgl_C: Lethal giant larvae(Lgl) like, C-terminal;	98.54
KOG2066	846	consensus Vacuolar assembly/sorting protein VPS41	98.53
PRK11138	394	outer membrane biogenesis protein BamB; Provisiona	98.48
KOG1920	1265	consensus IkappaB kinase complex, IKAP component [	98.48
KOG1275	1118	consensus PAB-dependent poly(A) ribonuclease, subu	98.45
PF06977	248	SdiA-regulated: SdiA-regulated; InterPro: IPR00972	98.4
PF07433	305	DUF1513: Protein of unknown function (DUF1513); In	98.39
KOG2114	933	consensus Vacuolar assembly/sorting protein PEP5/V	98.37
PF04053	443	Coatomer_WDAD: Coatomer WD associated region ; Int	98.34
PF11768	545	DUF3312: Protein of unknown function (DUF3312); In	98.34
KOG2114	933	consensus Vacuolar assembly/sorting protein PEP5/V	98.32
smart00320	40	WD40 WD40 repeats. Note that these repeats are per	98.32
PRK11138	394	outer membrane biogenesis protein BamB; Provisiona	98.28
PF14783	111	BBS2_Mid: Ciliary BBSome complex subunit 2, middle	98.24
PRK02888	635	nitrous-oxide reductase; Validated	98.24
PF08553	794	VID27: VID27 cytoplasmic protein; InterPro: IPR013	98.21
PF04053	443	Coatomer_WDAD: Coatomer WD associated region ; Int	98.2
KOG4640	665	consensus Anaphase-promoting complex (APC), subuni	98.2
KOG2444	238	consensus WD40 repeat protein [General function pr	98.19
COG3386	307	Gluconolactonase [Carbohydrate transport and metab	98.18
KOG4649	354	consensus PQQ (pyrrolo-quinoline quinone) repeat p	98.16
KOG2314	698	consensus Translation initiation factor 3, subunit	98.14
PF15492	282	Nbas_N: Neuroblastoma-amplified sequence, N termin	98.13
smart00320	40	WD40 WD40 repeats. Note that these repeats are per	98.12
PF08450	246	SGL: SMP-30/Gluconolaconase/LRE-like region; Inter	98.11
KOG1920	1265	consensus IkappaB kinase complex, IKAP component [	98.11
KOG3617	1416	consensus WD40 and TPR repeat-containing protein [	98.1
KOG3621	726	consensus WD40 repeat-containing protein [General	98.09
PRK02888	635	nitrous-oxide reductase; Validated	98.03
PF14783	111	BBS2_Mid: Ciliary BBSome complex subunit 2, middle	98.02
KOG2395	644	consensus Protein involved in vacuole import and d	98.01
KOG4640	665	consensus Anaphase-promoting complex (APC), subuni	98.0
KOG1008	783	consensus Uncharacterized conserved protein, conta	97.97
KOG1645	463	consensus RING-finger-containing E3 ubiquitin liga	97.92
PF04841	410	Vps16_N: Vps16, N-terminal region; InterPro: IPR00	97.85
PF06433	342	Me-amine-dh_H: Methylamine dehydrogenase heavy cha	97.85
PF03178	321	CPSF_A: CPSF A subunit region; InterPro: IPR004871	97.84
PF04841	410	Vps16_N: Vps16, N-terminal region; InterPro: IPR00	97.82
COG0823	425	TolB Periplasmic component of the Tol biopolymer t	97.81
PF08596	395	Lgl_C: Lethal giant larvae(Lgl) like, C-terminal;	97.77
KOG2444	238	consensus WD40 repeat protein [General function pr	97.75
PF08553	794	VID27: VID27 cytoplasmic protein; InterPro: IPR013	97.73
COG0823	425	TolB Periplasmic component of the Tol biopolymer t	97.73
KOG2079	1206	consensus Vacuolar assembly/sorting protein VPS8 [	97.7
PF00930	353	DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-termin	97.7
PRK13616	591	lipoprotein LpqB; Provisional	97.7
KOG4649	354	consensus PQQ (pyrrolo-quinoline quinone) repeat p	97.63
cd00216	488	PQQ_DH Dehydrogenases with pyrrolo-quinoline quino	97.6
PF06977	248	SdiA-regulated: SdiA-regulated; InterPro: IPR00972	97.55
COG3391	381	Uncharacterized conserved protein [Function unknow	97.5
PF12894	47	Apc4_WD40: Anaphase-promoting complex subunit 4 WD	97.49
PF12894	47	Apc4_WD40: Anaphase-promoting complex subunit 4 WD	97.45
PF00930	353	DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-termin	97.4
PF03178	321	CPSF_A: CPSF A subunit region; InterPro: IPR004871	97.39
COG3490	366	Uncharacterized protein conserved in bacteria [Fun	97.29
PF05694	461	SBP56: 56kDa selenium binding protein (SBP56); Int	97.23
KOG4499	310	consensus Ca2+-binding protein Regucalcin/SMP30 [I	97.23
COG3386	307	Gluconolactonase [Carbohydrate transport and metab	97.23
PF00780	275	CNH: CNH domain; InterPro: IPR001180 Based on sequ	97.02
PRK13616	591	lipoprotein LpqB; Provisional	96.95
KOG2395	644	consensus Protein involved in vacuole import and d	96.86
KOG1916	1283	consensus Nuclear protein, contains WD40 repeats [	96.85
PF14655	415	RAB3GAP2_N: Rab3 GTPase-activating protein regulat	96.85
COG4590	733	ABC-type uncharacterized transport system, permeas	96.81
PF12234	631	Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR0	96.79
PHA02713	557	hypothetical protein; Provisional	96.67
PF05096	264	Glu_cyclase_2: Glutamine cyclotransferase; InterPr	96.64
PF02897	414	Peptidase_S9_N: Prolyl oligopeptidase, N-terminal	96.61
cd00216	488	PQQ_DH Dehydrogenases with pyrrolo-quinoline quino	96.6
KOG2079	1206	consensus Vacuolar assembly/sorting protein VPS8 [	96.58
COG3490	366	Uncharacterized protein conserved in bacteria [Fun	96.53
PF06433	342	Me-amine-dh_H: Methylamine dehydrogenase heavy cha	96.51
PF14727	418	PHTB1_N: PTHB1 N-terminus	96.5
PHA03098	534	kelch-like protein; Provisional	96.49
COG3204	316	Uncharacterized protein conserved in bacteria [Fun	96.45
COG5167	776	VID27 Protein involved in vacuole import and degra	96.42
PF14727	418	PHTB1_N: PTHB1 N-terminus	96.4
COG3391	381	Uncharacterized conserved protein [Function unknow	96.37
PHA02713	557	hypothetical protein; Provisional	96.25
PF14781	136	BBS2_N: Ciliary BBSome complex subunit 2, N-termin	96.24
PF02897	414	Peptidase_S9_N: Prolyl oligopeptidase, N-terminal	96.08
PF00780	275	CNH: CNH domain; InterPro: IPR001180 Based on sequ	96.05
PF14655	415	RAB3GAP2_N: Rab3 GTPase-activating protein regulat	96.03
PF10313	43	DUF2415: Uncharacterised protein domain (DUF2415);	96.0
KOG4441	571	consensus Proteins containing BTB/POZ and Kelch do	95.97
PF14870	302	PSII_BNR: Photosynthesis system II assembly factor	95.93
PF10647	253	Gmad1: Lipoprotein LpqB beta-propeller domain; Int	95.92
TIGR03075	527	PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methan	95.92
KOG1897	1096	consensus Damage-specific DNA binding complex, sub	95.91
KOG4499	310	consensus Ca2+-binding protein Regucalcin/SMP30 [I	95.88
PF14583	386	Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C	95.86
PF08801	422	Nucleoporin_N: Nup133 N terminal like; InterPro: I	95.8
PF07569	219	Hira: TUP1-like enhancer of split; InterPro: IPR01	95.77
PF08728	717	CRT10: CRT10; InterPro: IPR014839 CRT10 is a trans	95.77
PRK10115	686	protease 2; Provisional	95.75
KOG2247	615	consensus WD40 repeat-containing protein [General	95.74
PF05694	461	SBP56: 56kDa selenium binding protein (SBP56); Int	95.68
PF15390	671	DUF4613: Domain of unknown function (DUF4613)	95.65
PF10313	43	DUF2415: Uncharacterised protein domain (DUF2415);	95.64
PF14761	215	HPS3_N: Hermansky-Pudlak syndrome 3	95.64
PF10168	717	Nup88: Nuclear pore component; InterPro: IPR019321	95.63
PHA02790	480	Kelch-like protein; Provisional	95.39
PF07569	219	Hira: TUP1-like enhancer of split; InterPro: IPR01	95.36
KOG4441	571	consensus Proteins containing BTB/POZ and Kelch do	95.3
PF14870	302	PSII_BNR: Photosynthesis system II assembly factor	95.29
TIGR03074	764	PQQ_membr_DH membrane-bound PQQ-dependent dehydrog	95.25
PF12234	631	Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR0	95.24
PF07250	243	Glyoxal_oxid_N: Glyoxal oxidase N-terminus; InterP	95.22
KOG1916	1283	consensus Nuclear protein, contains WD40 repeats [	95.16
KOG4460	741	consensus Nuclear pore complex, Nup88/rNup84 compo	94.99
TIGR02604	367	Piru_Ver_Nterm putative membrane-bound dehydrogena	94.99
TIGR03118	336	PEPCTERM_chp_1 conserved hypothetical protein TIGR	94.98
PF15390	671	DUF4613: Domain of unknown function (DUF4613)	94.86
KOG3630	1405	consensus Nuclear pore complex, Nup214/CAN compone	94.83
KOG3630	1405	consensus Nuclear pore complex, Nup214/CAN compone	94.8
PF14269	299	Arylsulfotran_2: Arylsulfotransferase (ASST)	94.76
PHA03098	534	kelch-like protein; Provisional	94.72
PF14583	386	Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C	94.7
PF05096	264	Glu_cyclase_2: Glutamine cyclotransferase; InterPr	94.56
TIGR03074	764	PQQ_membr_DH membrane-bound PQQ-dependent dehydrog	94.03
PF11715	547	Nup160: Nucleoporin Nup120/160; InterPro: IPR02171	93.87
PF10168	717	Nup88: Nuclear pore component; InterPro: IPR019321	93.86
COG3204	316	Uncharacterized protein conserved in bacteria [Fun	93.66
KOG1900	1311	consensus Nuclear pore complex, Nup155 component (	93.58
COG3823	262	Glutamine cyclotransferase [Posttranslational modi	93.37
KOG2377	657	consensus Uncharacterized conserved protein [Funct	93.25
PF08728	717	CRT10: CRT10; InterPro: IPR014839 CRT10 is a trans	93.19
TIGR02276	42	beta_rpt_yvtn 40-residue YVTN family beta-propelle	93.1
PF12768	281	Rax2: Cortical protein marker for cell polarity	92.99
COG5276	370	Uncharacterized conserved protein [Function unknow	92.89
PF11715	547	Nup160: Nucleoporin Nup120/160; InterPro: IPR02171	92.85
PF12657	173	TFIIIC_delta: Transcription factor IIIC subunit de	92.79
KOG2280	829	consensus Vacuolar assembly/sorting protein VPS16	92.59
KOG3616	1636	consensus Selective LIM binding factor [Transcript	92.37
PHA02790	480	Kelch-like protein; Provisional	92.28
KOG1900	1311	consensus Nuclear pore complex, Nup155 component (	92.25
TIGR03075	527	PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methan	92.14
KOG2247	615	consensus WD40 repeat-containing protein [General	92.13
TIGR02604	367	Piru_Ver_Nterm putative membrane-bound dehydrogena	91.69
COG5167	776	VID27 Protein involved in vacuole import and degra	91.66
PF03088	89	Str_synth: Strictosidine synthase; InterPro: IPR01	91.15
PF11635	753	Med16: Mediator complex subunit 16; InterPro: IPR0	91.04
TIGR02276	42	beta_rpt_yvtn 40-residue YVTN family beta-propelle	90.9
smart00564	33	PQQ beta-propeller repeat. Beta-propeller repeat o	90.78
PF12657	173	TFIIIC_delta: Transcription factor IIIC subunit de	90.59
PF07995	331	GSDH: Glucose / Sorbosone dehydrogenase; InterPro:	90.34
smart00564	33	PQQ beta-propeller repeat. Beta-propeller repeat o	90.18
PF07250	243	Glyoxal_oxid_N: Glyoxal oxidase N-terminus; InterP	90.06
PF01011	38	PQQ: PQQ enzyme repeat family.; InterPro: IPR00237	89.9
PF14781	136	BBS2_N: Ciliary BBSome complex subunit 2, N-termin	89.81
PRK10115	686	protease 2; Provisional	89.39
PF07676	39	PD40: WD40-like Beta Propeller Repeat; InterPro: I	89.37
PF01731	86	Arylesterase: Arylesterase; InterPro: IPR002640 Th	89.12
PF01011	38	PQQ: PQQ enzyme repeat family.; InterPro: IPR00237	89.03
TIGR03118	336	PEPCTERM_chp_1 conserved hypothetical protein TIGR	88.88
PRK13684	334	Ycf48-like protein; Provisional	88.1
KOG1897	1096	consensus Damage-specific DNA binding complex, sub	87.87
KOG3616	1636	consensus Selective LIM binding factor [Transcript	87.76
KOG2280	829	consensus Vacuolar assembly/sorting protein VPS16	87.74
PF02333	381	Phytase: Phytase; InterPro: IPR003431 Phytase (3.1	87.53
PF14761	215	HPS3_N: Hermansky-Pudlak syndrome 3	87.22
PF10214	765	Rrn6: RNA polymerase I-specific transcription-init	87.15
PF03088	89	Str_synth: Strictosidine synthase; InterPro: IPR01	86.72
PF10647	253	Gmad1: Lipoprotein LpqB beta-propeller domain; Int	86.32
PRK13684	334	Ycf48-like protein; Provisional	85.85
KOG4460	741	consensus Nuclear pore complex, Nup88/rNup84 compo	84.27
COG3823	262	Glutamine cyclotransferase [Posttranslational modi	83.76
KOG2109	788	consensus WD40 repeat protein [General function pr	83.76
KOG1983	993	consensus Tomosyn and related SNARE-interacting pr	82.3
PF07995	331	GSDH: Glucose / Sorbosone dehydrogenase; InterPro:	81.96
PF02333	381	Phytase: Phytase; InterPro: IPR003431 Phytase (3.1	81.94
smart00036	302	CNH Domain found in NIK1-like kinases, mouse citro	81.9
PF05935	477	Arylsulfotrans: Arylsulfotransferase (ASST); Inter	81.08
COG4880	603	Secreted protein containing C-terminal beta-propel	80.44

>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]

Probab=100.00  E-value=3e-44  Score=266.93  Aligned_cols=225  Identities=32%  Similarity=0.575  Sum_probs=204.7

Q ss_pred             CCCCceeeec--ccccceecccCcCceEEEEEccC--CCeEEEecCCCeEEEeecCCCCCCCCCCCCCCccccCCccccc
Q 042146            2 SSDRSLESFR--PYTLTQTLNGHLRAVSYVKFSHD--GRLLTSSSAEKTLLTYSLSSISNFDSTPPSPLQKFTGHEQGIS   77 (262)
Q Consensus         2 s~d~~i~~~~--~~~~~~~~~~h~~~v~~~~~~~~--~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~   77 (262)
                      |.+|..+.|.  ....+++|.+|...|.++.|+|.  +..+||++.||++++|++++        ..++..+.+|...|.
T Consensus       194 swsG~~kvW~~~~~~~~~~l~gH~~~v~~~~fhP~~~~~~lat~s~Dgtvklw~~~~--------e~~l~~l~gH~~RVs  265 (459)
T KOG0272|consen  194 SWSGLVKVWSVPQCNLLQTLRGHTSRVGAAVFHPVDSDLNLATASADGTVKLWKLSQ--------ETPLQDLEGHLARVS  265 (459)
T ss_pred             ecCCceeEeecCCcceeEEEeccccceeeEEEccCCCccceeeeccCCceeeeccCC--------Ccchhhhhcchhhhe
Confidence            4567777775  56789999999999999999997  56899999999999997654        355666666666555


Q ss_pred             cce---------------eEEEEecCCCccceecccCCcceEEEEEeCCCCEEEeecCCCeEEEEECCCCeeeeeeecCC
Q 042146           78 DLA---------------TIRLWDVPTATSLKTLIGHTNYVFCINFNPQSNRIVSDTFNETIRIWDIKTGKCLKVLPAHS  142 (262)
Q Consensus        78 ~~~---------------~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~  142 (262)
                      .++               +-++||++++..+....+|...|.+++|+|||.++++|+.|..-+|||+++++++..+.+|.
T Consensus       266 ~VafHPsG~~L~TasfD~tWRlWD~~tk~ElL~QEGHs~~v~~iaf~~DGSL~~tGGlD~~~RvWDlRtgr~im~L~gH~  345 (459)
T KOG0272|consen  266 RVAFHPSGKFLGTASFDSTWRLWDLETKSELLLQEGHSKGVFSIAFQPDGSLAATGGLDSLGRVWDLRTGRCIMFLAGHI  345 (459)
T ss_pred             eeeecCCCceeeecccccchhhcccccchhhHhhcccccccceeEecCCCceeeccCccchhheeecccCcEEEEecccc
Confidence            444               78999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCeeeEEEccCCCEEEEEeCCCeEEEEeCCC--------------------C-CccEEEEEcCCCeEEEEecCCCceeeE
Q 042146          143 DPVTAIDFNRDGTMIVTSSYDGLYRILDAST--------------------P-NGKFILVGTLDNTLRLWNYSTRKILKT  201 (262)
Q Consensus       143 ~~v~~~~~~~~~~~l~~~~~dg~i~~~d~~~--------------------~-~~~~l~~~~~dg~i~i~d~~~~~~~~~  201 (262)
                      .+|.+++|+|+|.+|++|+.|+++++||++.                    | .|.+|++++.|++++||..++..+++.
T Consensus       346 k~I~~V~fsPNGy~lATgs~Dnt~kVWDLR~r~~ly~ipAH~nlVS~Vk~~p~~g~fL~TasyD~t~kiWs~~~~~~~ks  425 (459)
T KOG0272|consen  346 KEILSVAFSPNGYHLATGSSDNTCKVWDLRMRSELYTIPAHSNLVSQVKYSPQEGYFLVTASYDNTVKIWSTRTWSPLKS  425 (459)
T ss_pred             cceeeEeECCCceEEeecCCCCcEEEeeecccccceecccccchhhheEecccCCeEEEEcccCcceeeecCCCcccchh
Confidence            9999999999999999999999999999987                    4 788999999999999999999999999


Q ss_pred             EeccCCceeEEEEEEecCCCeeEEccccceEEEEEcCCCCeEEEeeecCCCcEEEEe
Q 042146          202 YSGYTNSKYCISSTFSVTNGKYIVSHRDPVISVASHPAKNIIASGALDNDRTMKIWT  258 (262)
Q Consensus       202 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~d~d~~i~iw~  258 (262)
                      +.+                      |++.|.++..+|++..++|++  .|.++++|.
T Consensus       426 LaG----------------------He~kV~s~Dis~d~~~i~t~s--~DRT~KLW~  458 (459)
T KOG0272|consen  426 LAG----------------------HEGKVISLDISPDSQAIATSS--FDRTIKLWR  458 (459)
T ss_pred             hcC----------------------CccceEEEEeccCCceEEEec--cCceeeecc
Confidence            998                      999999999999999999999  899999996

>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]

Probab=100.00  E-value=1.6e-41  Score=249.99  Aligned_cols=229  Identities=27%  Similarity=0.478  Sum_probs=199.0

Q ss_pred             CCCCceeeec--ccccceecccCcCceEEEEEccCCCeEEEecCCCeEEEeecCCCCCCCCCCCCCCccccCCcccccc-
Q 042146            2 SSDRSLESFR--PYTLTQTLNGHLRAVSYVKFSHDGRLLTSSSAEKTLLTYSLSSISNFDSTPPSPLQKFTGHEQGISD-   78 (262)
Q Consensus         2 s~d~~i~~~~--~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~-   78 (262)
                      |-|.+++.|+  +.++.++.++|..-|.|++|+|||+.||+|+.||+|++||..+....       ...+.+|...+.+ 
T Consensus       134 sGD~TvR~WD~~TeTp~~t~KgH~~WVlcvawsPDgk~iASG~~dg~I~lwdpktg~~~-------g~~l~gH~K~It~L  206 (480)
T KOG0271|consen  134 SGDTTVRLWDLDTETPLFTCKGHKNWVLCVAWSPDGKKIASGSKDGSIRLWDPKTGQQI-------GRALRGHKKWITAL  206 (480)
T ss_pred             CCCceEEeeccCCCCcceeecCCccEEEEEEECCCcchhhccccCCeEEEecCCCCCcc-------cccccCcccceeEE
Confidence            4578888887  45689999999999999999999999999999999999986654322       1223333333333 


Q ss_pred             -------------------ceeEEEEecCCCccceecccCCcceEEEEEeCCCCEEEeecCCCeEEEEECCCCeeeeeee
Q 042146           79 -------------------LATIRLWDVPTATSLKTLIGHTNYVFCINFNPQSNRIVSDTFNETIRIWDIKTGKCLKVLP  139 (262)
Q Consensus        79 -------------------~~~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~  139 (262)
                                         .+.++|||+..+.++..+.+|..+|+|++|-- ..++++|+.|++|++|+...|++.++++
T Consensus       207 awep~hl~p~~r~las~skDg~vrIWd~~~~~~~~~lsgHT~~VTCvrwGG-~gliySgS~DrtIkvw~a~dG~~~r~lk  285 (480)
T KOG0271|consen  207 AWEPLHLVPPCRRLASSSKDGSVRIWDTKLGTCVRTLSGHTASVTCVRWGG-EGLIYSGSQDRTIKVWRALDGKLCRELK  285 (480)
T ss_pred             eecccccCCCccceecccCCCCEEEEEccCceEEEEeccCccceEEEEEcC-CceEEecCCCceEEEEEccchhHHHhhc
Confidence                               33899999999999999999999999999963 3589999999999999999999999999


Q ss_pred             cCCCCeeeEEEc-----------cCCC-------------------------EEEEEeCCCeEEEEeCCC----------
Q 042146          140 AHSDPVTAIDFN-----------RDGT-------------------------MIVTSSYDGLYRILDAST----------  173 (262)
Q Consensus       140 ~~~~~v~~~~~~-----------~~~~-------------------------~l~~~~~dg~i~~~d~~~----------  173 (262)
                      +|...|+.++.+           |.++                         .|++|+.|.++.+|+...          
T Consensus       286 GHahwvN~lalsTdy~LRtgaf~~t~~~~~~~se~~~~Al~rY~~~~~~~~erlVSgsDd~tlflW~p~~~kkpi~rmtg  365 (480)
T KOG0271|consen  286 GHAHWVNHLALSTDYVLRTGAFDHTGRKPKSFSEEQKKALERYEAVLKDSGERLVSGSDDFTLFLWNPFKSKKPITRMTG  365 (480)
T ss_pred             ccchheeeeeccchhhhhccccccccccCCChHHHHHHHHHHHHHhhccCcceeEEecCCceEEEecccccccchhhhhc
Confidence            999999999887           3233                         499999999999999654          


Q ss_pred             -----------CCccEEEEEcCCCeEEEEecCCCceeeEEeccCCceeEEEEEEecCCCeeEEccccceEEEEEcCCCCe
Q 042146          174 -----------PNGKFILVGTLDNTLRLWNYSTRKILKTYSGYTNSKYCISSTFSVTNGKYIVSHRDPVISVASHPAKNI  242 (262)
Q Consensus       174 -----------~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~  242 (262)
                                 ||++++++++-|..|++||-++|+.+.+|++                      |-++|..++|+.|.++
T Consensus       366 Hq~lVn~V~fSPd~r~IASaSFDkSVkLW~g~tGk~lasfRG----------------------Hv~~VYqvawsaDsRL  423 (480)
T KOG0271|consen  366 HQALVNHVSFSPDGRYIASASFDKSVKLWDGRTGKFLASFRG----------------------HVAAVYQVAWSADSRL  423 (480)
T ss_pred             hhhheeeEEECCCccEEEEeecccceeeeeCCCcchhhhhhh----------------------ccceeEEEEeccCccE
Confidence                       9999999999999999999999999999998                      8899999999999999


Q ss_pred             EEEeeecCCCcEEEEeeccC
Q 042146          243 IASGALDNDRTMKIWTQEKE  262 (262)
Q Consensus       243 l~~~~~d~d~~i~iw~~~~~  262 (262)
                      |++|+  .|.++++|++..+
T Consensus       424 lVS~S--kDsTLKvw~V~tk  441 (480)
T KOG0271|consen  424 LVSGS--KDSTLKVWDVRTK  441 (480)
T ss_pred             EEEcC--CCceEEEEEeeee
Confidence            99999  9999999999753

>KOG0286 consensus G-protein beta subunit [General function prediction only]

Probab=100.00  E-value=5.3e-39  Score=228.94  Aligned_cols=231  Identities=23%  Similarity=0.457  Sum_probs=204.3

Q ss_pred             CCCCceeeecccc--cceecccCcCceEEEEEccCCCeEEEecCCCeEEEeecCCCCCCCCCCCCCCccccCCccccccc
Q 042146            2 SSDRSLESFRPYT--LTQTLNGHLRAVSYVKFSHDGRLLTSSSAEKTLLTYSLSSISNFDSTPPSPLQKFTGHEQGISDL   79 (262)
Q Consensus         2 s~d~~i~~~~~~~--~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~   79 (262)
                      |.||.+-+|+.++  .++.+.-....|..++|+|.|+++|.|+-|+...||++.....  .........+.+|...+.+.
T Consensus        74 SqDGklIvWDs~TtnK~haipl~s~WVMtCA~sPSg~~VAcGGLdN~Csiy~ls~~d~--~g~~~v~r~l~gHtgylScC  151 (343)
T KOG0286|consen   74 SQDGKLIVWDSFTTNKVHAIPLPSSWVMTCAYSPSGNFVACGGLDNKCSIYPLSTRDA--EGNVRVSRELAGHTGYLSCC  151 (343)
T ss_pred             ccCCeEEEEEcccccceeEEecCceeEEEEEECCCCCeEEecCcCceeEEEecccccc--cccceeeeeecCccceeEEE
Confidence            6799999998665  5666777788999999999999999999999999999874211  11112234466666655443


Q ss_pred             e--------------eEEEEecCCCccceecccCCcceEEEEEeC-CCCEEEeecCCCeEEEEECCCCeeeeeeecCCCC
Q 042146           80 A--------------TIRLWDVPTATSLKTLIGHTNYVFCINFNP-QSNRIVSDTFNETIRIWDIKTGKCLKVLPAHSDP  144 (262)
Q Consensus        80 ~--------------~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~  144 (262)
                      .              +..+||+++++.+..+.+|.+.|.++.+.| +++.+++|+-|+..++||+|.+.+++.|.+|.+.
T Consensus       152 ~f~dD~~ilT~SGD~TCalWDie~g~~~~~f~GH~gDV~slsl~p~~~ntFvSg~cD~~aklWD~R~~~c~qtF~ghesD  231 (343)
T KOG0286|consen  152 RFLDDNHILTGSGDMTCALWDIETGQQTQVFHGHTGDVMSLSLSPSDGNTFVSGGCDKSAKLWDVRSGQCVQTFEGHESD  231 (343)
T ss_pred             EEcCCCceEecCCCceEEEEEcccceEEEEecCCcccEEEEecCCCCCCeEEecccccceeeeeccCcceeEeecccccc
Confidence            3              899999999999999999999999999999 9999999999999999999999999999999999


Q ss_pred             eeeEEEccCCCEEEEEeCCCeEEEEeCCC----------------------CCccEEEEEcCCCeEEEEecCCCceeeEE
Q 042146          145 VTAIDFNRDGTMIVTSSYDGLYRILDAST----------------------PNGKFILVGTLDNTLRLWNYSTRKILKTY  202 (262)
Q Consensus       145 v~~~~~~~~~~~l~~~~~dg~i~~~d~~~----------------------~~~~~l~~~~~dg~i~i~d~~~~~~~~~~  202 (262)
                      |++++|.|+|.-|++|+.|++.++||+|.                      ..|++|++|..|..+.+||.-.++.+..+
T Consensus       232 INsv~ffP~G~afatGSDD~tcRlyDlRaD~~~a~ys~~~~~~gitSv~FS~SGRlLfagy~d~~c~vWDtlk~e~vg~L  311 (343)
T KOG0286|consen  232 INSVRFFPSGDAFATGSDDATCRLYDLRADQELAVYSHDSIICGITSVAFSKSGRLLFAGYDDFTCNVWDTLKGERVGVL  311 (343)
T ss_pred             cceEEEccCCCeeeecCCCceeEEEeecCCcEEeeeccCcccCCceeEEEcccccEEEeeecCCceeEeeccccceEEEe
Confidence            99999999999999999999999999997                      57899999999999999999999999988


Q ss_pred             eccCCceeEEEEEEecCCCeeEEccccceEEEEEcCCCCeEEEeeecCCCcEEEEe
Q 042146          203 SGYTNSKYCISSTFSVTNGKYIVSHRDPVISVASHPAKNIIASGALDNDRTMKIWT  258 (262)
Q Consensus       203 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~d~d~~i~iw~  258 (262)
                      .+                      |+.+|+++..+|||..++||||  |.++|||.
T Consensus       312 ~G----------------------HeNRvScl~~s~DG~av~TgSW--Ds~lriW~  343 (343)
T KOG0286|consen  312 AG----------------------HENRVSCLGVSPDGMAVATGSW--DSTLRIWA  343 (343)
T ss_pred             ec----------------------cCCeeEEEEECCCCcEEEecch--hHheeecC
Confidence            87                      9999999999999999999995  58999994

>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]

Probab=100.00  E-value=8.9e-40  Score=240.78  Aligned_cols=225  Identities=24%  Similarity=0.497  Sum_probs=199.7

Q ss_pred             CCCCceeeeccc---ccceecccCcCceEEEEEcc-----CCCeEEEecCCCeEEEeecCCCCCCCCCCCCCCccccCCc
Q 042146            2 SSDRSLESFRPY---TLTQTLNGHLRAVSYVKFSH-----DGRLLTSSSAEKTLLTYSLSSISNFDSTPPSPLQKFTGHE   73 (262)
Q Consensus         2 s~d~~i~~~~~~---~~~~~~~~h~~~v~~~~~~~-----~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~   73 (262)
                      +-||+|..|+|-   +.-..|.+|.+.|++++|.|     ..++||+++.||.++|||+.        ....+..+.+|.
T Consensus       176 ~~dg~I~lwdpktg~~~g~~l~gH~K~It~Lawep~hl~p~~r~las~skDg~vrIWd~~--------~~~~~~~lsgHT  247 (480)
T KOG0271|consen  176 SKDGSIRLWDPKTGQQIGRALRGHKKWITALAWEPLHLVPPCRRLASSSKDGSVRIWDTK--------LGTCVRTLSGHT  247 (480)
T ss_pred             ccCCeEEEecCCCCCcccccccCcccceeEEeecccccCCCccceecccCCCCEEEEEcc--------CceEEEEeccCc
Confidence            358999999843   46778999999999999976     57799999999999999664        345556677777


Q ss_pred             cccccce--------------eEEEEecCCCccceecccCCcceEEEEEe-----------CCCC---------------
Q 042146           74 QGISDLA--------------TIRLWDVPTATSLKTLIGHTNYVFCINFN-----------PQSN---------------  113 (262)
Q Consensus        74 ~~v~~~~--------------~i~v~d~~~~~~~~~~~~~~~~v~~~~~~-----------~~~~---------------  113 (262)
                      .+|+++.              +|++|+...|....++++|...|+.|+++           |.++               
T Consensus       248 ~~VTCvrwGG~gliySgS~DrtIkvw~a~dG~~~r~lkGHahwvN~lalsTdy~LRtgaf~~t~~~~~~~se~~~~Al~r  327 (480)
T KOG0271|consen  248 ASVTCVRWGGEGLIYSGSQDRTIKVWRALDGKLCRELKGHAHWVNHLALSTDYVLRTGAFDHTGRKPKSFSEEQKKALER  327 (480)
T ss_pred             cceEEEEEcCCceEEecCCCceEEEEEccchhHHHhhcccchheeeeeccchhhhhccccccccccCCChHHHHHHHHHH
Confidence            7776665              99999999999999999999999999877           3233               


Q ss_pred             ----------EEEeecCCCeEEEEECCC-CeeeeeeecCCCCeeeEEEccCCCEEEEEeCCCeEEEEeCCC---------
Q 042146          114 ----------RIVSDTFNETIRIWDIKT-GKCLKVLPAHSDPVTAIDFNRDGTMIVTSSYDGLYRILDAST---------  173 (262)
Q Consensus       114 ----------~l~~~~~dg~i~vwd~~~-~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~d~~~---------  173 (262)
                                .+++|+.|+++.+|+... .+++..+.+|..-|+.+.||||++++++++.|..|++||.++         
T Consensus       328 Y~~~~~~~~erlVSgsDd~tlflW~p~~~kkpi~rmtgHq~lVn~V~fSPd~r~IASaSFDkSVkLW~g~tGk~lasfRG  407 (480)
T KOG0271|consen  328 YEAVLKDSGERLVSGSDDFTLFLWNPFKSKKPITRMTGHQALVNHVSFSPDGRYIASASFDKSVKLWDGRTGKFLASFRG  407 (480)
T ss_pred             HHHhhccCcceeEEecCCceEEEecccccccchhhhhchhhheeeEEECCCccEEEEeecccceeeeeCCCcchhhhhhh
Confidence                      499999999999999864 457888999999999999999999999999999999999887         


Q ss_pred             -----------CCccEEEEEcCCCeEEEEecCCCceeeEEeccCCceeEEEEEEecCCCeeEEccccceEEEEEcCCCCe
Q 042146          174 -----------PNGKFILVGTLDNTLRLWNYSTRKILKTYSGYTNSKYCISSTFSVTNGKYIVSHRDPVISVASHPAKNI  242 (262)
Q Consensus       174 -----------~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~  242 (262)
                                 .|.++|++|+.|.++++|++++.++...+++                      |.+.|.++.|+|||..
T Consensus       408 Hv~~VYqvawsaDsRLlVS~SkDsTLKvw~V~tkKl~~DLpG----------------------h~DEVf~vDwspDG~r  465 (480)
T KOG0271|consen  408 HVAAVYQVAWSADSRLLVSGSKDSTLKVWDVRTKKLKQDLPG----------------------HADEVFAVDWSPDGQR  465 (480)
T ss_pred             ccceeEEEEeccCccEEEEcCCCceEEEEEeeeeeecccCCC----------------------CCceEEEEEecCCCce
Confidence                       6889999999999999999999999999988                      9999999999999999


Q ss_pred             EEEeeecCCCcEEEEe
Q 042146          243 IASGALDNDRTMKIWT  258 (262)
Q Consensus       243 l~~~~~d~d~~i~iw~  258 (262)
                      +++|+  .|..+++|.
T Consensus       466 V~sgg--kdkv~~lw~  479 (480)
T KOG0271|consen  466 VASGG--KDKVLRLWR  479 (480)
T ss_pred             eecCC--CceEEEeec
Confidence            99999  999999996

>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]

Probab=100.00  E-value=6.2e-40  Score=244.01  Aligned_cols=208  Identities=31%  Similarity=0.530  Sum_probs=188.1

Q ss_pred             cCcCceEEEEEccCCCeEEEecCCCeEEEeecCCCCCCCCCCCCCCccccCCccccc-----------------cceeEE
Q 042146           21 GHLRAVSYVKFSHDGRLLTSSSAEKTLLTYSLSSISNFDSTPPSPLQKFTGHEQGIS-----------------DLATIR   83 (262)
Q Consensus        21 ~h~~~v~~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~-----------------~~~~i~   83 (262)
                      +-+.||..+.|+++++.|+|||.+|.+++|+.+..        .....+.+|...+.                 ..+.++
T Consensus       173 gd~rPis~~~fS~ds~~laT~swsG~~kvW~~~~~--------~~~~~l~gH~~~v~~~~fhP~~~~~~lat~s~Dgtvk  244 (459)
T KOG0272|consen  173 GDTRPISGCSFSRDSKHLATGSWSGLVKVWSVPQC--------NLLQTLRGHTSRVGAAVFHPVDSDLNLATASADGTVK  244 (459)
T ss_pred             cCCCcceeeEeecCCCeEEEeecCCceeEeecCCc--------ceeEEEeccccceeeEEEccCCCccceeeeccCCcee
Confidence            56789999999999999999999999999976543        33444444443322                 233899


Q ss_pred             EEecCCCccceecccCCcceEEEEEeCCCCEEEeecCCCeEEEEECCCCeeeeeeecCCCCeeeEEEccCCCEEEEEeCC
Q 042146           84 LWDVPTATSLKTLIGHTNYVFCINFNPQSNRIVSDTFNETIRIWDIKTGKCLKVLPAHSDPVTAIDFNRDGTMIVTSSYD  163 (262)
Q Consensus        84 v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d  163 (262)
                      +|++.+..++..+.+|...|..++|+|+|++|++++.|.+-++||+++++.+....+|..+|.+++|+|||.++++|+.|
T Consensus       245 lw~~~~e~~l~~l~gH~~RVs~VafHPsG~~L~TasfD~tWRlWD~~tk~ElL~QEGHs~~v~~iaf~~DGSL~~tGGlD  324 (459)
T KOG0272|consen  245 LWKLSQETPLQDLEGHLARVSRVAFHPSGKFLGTASFDSTWRLWDLETKSELLLQEGHSKGVFSIAFQPDGSLAATGGLD  324 (459)
T ss_pred             eeccCCCcchhhhhcchhhheeeeecCCCceeeecccccchhhcccccchhhHhhcccccccceeEecCCCceeeccCcc
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CeEEEEeCCC--------------------CCccEEEEEcCCCeEEEEecCCCceeeEEeccCCceeEEEEEEecCCCee
Q 042146          164 GLYRILDAST--------------------PNGKFILVGTLDNTLRLWNYSTRKILKTYSGYTNSKYCISSTFSVTNGKY  223 (262)
Q Consensus       164 g~i~~~d~~~--------------------~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  223 (262)
                      ..-++||+|+                    |+|..|++|+.|++++|||++..+++.++++                   
T Consensus       325 ~~~RvWDlRtgr~im~L~gH~k~I~~V~fsPNGy~lATgs~Dnt~kVWDLR~r~~ly~ipA-------------------  385 (459)
T KOG0272|consen  325 SLGRVWDLRTGRCIMFLAGHIKEILSVAFSPNGYHLATGSSDNTCKVWDLRMRSELYTIPA-------------------  385 (459)
T ss_pred             chhheeecccCcEEEEecccccceeeEeECCCceEEeecCCCCcEEEeeecccccceeccc-------------------
Confidence            9999999998                    9999999999999999999999999988888                   


Q ss_pred             EEccccceEEEEEcC-CCCeEEEeeecCCCcEEEEeec
Q 042146          224 IVSHRDPVISVASHP-AKNIIASGALDNDRTMKIWTQE  260 (262)
Q Consensus       224 ~~~~~~~v~~~~~~p-~~~~l~~~~~d~d~~i~iw~~~  260 (262)
                         |..-|+.+.|+| .|.+|+|+|  .|++++||...
T Consensus       386 ---H~nlVS~Vk~~p~~g~fL~Tas--yD~t~kiWs~~  418 (459)
T KOG0272|consen  386 ---HSNLVSQVKYSPQEGYFLVTAS--YDNTVKIWSTR  418 (459)
T ss_pred             ---ccchhhheEecccCCeEEEEcc--cCcceeeecCC
Confidence               888999999999 789999999  99999999764

>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]

Probab=100.00  E-value=4.2e-37  Score=217.89  Aligned_cols=219  Identities=28%  Similarity=0.516  Sum_probs=190.3

Q ss_pred             cccceecccCcCceEEEEEccC-CCeEEEecCCCeEEEeecCCCCCCCCCCCCCCccccCCccccccce-----------
Q 042146           13 YTLTQTLNGHLRAVSYVKFSHD-GRLLTSSSAEKTLLTYSLSSISNFDSTPPSPLQKFTGHEQGISDLA-----------   80 (262)
Q Consensus        13 ~~~~~~~~~h~~~v~~~~~~~~-~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~-----------   80 (262)
                      ..+..++++|++.|+.++..+. ...+++++.|.++.+|++...   +...+.+...+.+|...+..+.           
T Consensus         5 l~l~~tl~gh~d~Vt~la~~~~~~~~l~sasrDk~ii~W~L~~d---d~~~G~~~r~~~GHsH~v~dv~~s~dg~~alS~   81 (315)
T KOG0279|consen    5 LVLRGTLEGHTDWVTALAIKIKNSDILVSASRDKTIIVWKLTSD---DIKYGVPVRRLTGHSHFVSDVVLSSDGNFALSA   81 (315)
T ss_pred             heeeeeecCCCceEEEEEeecCCCceEEEcccceEEEEEEeccC---ccccCceeeeeeccceEecceEEccCCceEEec
Confidence            3456789999999999999887 568899999999999999764   3444556677778776665443           


Q ss_pred             ----eEEEEecCCCccceecccCCcceEEEEEeCCCCEEEeecCCCeEEEEECCCCeeeeeeecC--CCCeeeEEEccC-
Q 042146           81 ----TIRLWDVPTATSLKTLIGHTNYVFCINFNPQSNRIVSDTFNETIRIWDIKTGKCLKVLPAH--SDPVTAIDFNRD-  153 (262)
Q Consensus        81 ----~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~--~~~v~~~~~~~~-  153 (262)
                          .+++||+.+++..+.+.+|...|.+++|+||.+++++|+.|.+|++|+.... +..++..+  .+-|+|+.|+|+ 
T Consensus        82 swD~~lrlWDl~~g~~t~~f~GH~~dVlsva~s~dn~qivSGSrDkTiklwnt~g~-ck~t~~~~~~~~WVscvrfsP~~  160 (315)
T KOG0279|consen   82 SWDGTLRLWDLATGESTRRFVGHTKDVLSVAFSTDNRQIVSGSRDKTIKLWNTLGV-CKYTIHEDSHREWVSCVRFSPNE  160 (315)
T ss_pred             cccceEEEEEecCCcEEEEEEecCCceEEEEecCCCceeecCCCcceeeeeeeccc-EEEEEecCCCcCcEEEEEEcCCC
Confidence                9999999999999999999999999999999999999999999999998754 44444333  788999999997 


Q ss_pred             -CCEEEEEeCCCeEEEEeCCC--------------------CCccEEEEEcCCCeEEEEecCCCceeeEEeccCCceeEE
Q 042146          154 -GTMIVTSSYDGLYRILDAST--------------------PNGKFILVGTLDNTLRLWNYSTRKILKTYSGYTNSKYCI  212 (262)
Q Consensus       154 -~~~l~~~~~dg~i~~~d~~~--------------------~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~  212 (262)
                       ..++++++.|+++++||++.                    |||...++|+.||.+.+||++.++.+..+.         
T Consensus       161 ~~p~Ivs~s~DktvKvWnl~~~~l~~~~~gh~~~v~t~~vSpDGslcasGgkdg~~~LwdL~~~k~lysl~---------  231 (315)
T KOG0279|consen  161 SNPIIVSASWDKTVKVWNLRNCQLRTTFIGHSGYVNTVTVSPDGSLCASGGKDGEAMLWDLNEGKNLYSLE---------  231 (315)
T ss_pred             CCcEEEEccCCceEEEEccCCcchhhccccccccEEEEEECCCCCEEecCCCCceEEEEEccCCceeEecc---------
Confidence             67999999999999999987                    999999999999999999999999988887         


Q ss_pred             EEEEecCCCeeEEccccceEEEEEcCCCCeEEEeeecCCCcEEEEeecc
Q 042146          213 SSTFSVTNGKYIVSHRDPVISVASHPAKNIIASGALDNDRTMKIWTQEK  261 (262)
Q Consensus       213 ~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~d~d~~i~iw~~~~  261 (262)
                                    |...|.+++|+|+...|+.+.   +..|+||+++.
T Consensus       232 --------------a~~~v~sl~fspnrywL~~at---~~sIkIwdl~~  263 (315)
T KOG0279|consen  232 --------------AFDIVNSLCFSPNRYWLCAAT---ATSIKIWDLES  263 (315)
T ss_pred             --------------CCCeEeeEEecCCceeEeecc---CCceEEEeccc
Confidence                          888999999999999888875   56799999875

>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]

Probab=100.00  E-value=1.8e-38  Score=252.57  Aligned_cols=189  Identities=28%  Similarity=0.523  Sum_probs=178.1

Q ss_pred             ccceecccCcCceEEEEEccCCCeEEEecCCCeEEEeecCCCCCCCCCCCCCCccccCCccccccceeEEEEecCCCccc
Q 042146           14 TLTQTLNGHLRAVSYVKFSHDGRLLTSSSAEKTLLTYSLSSISNFDSTPPSPLQKFTGHEQGISDLATIRLWDVPTATSL   93 (262)
Q Consensus        14 ~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~i~v~d~~~~~~~   93 (262)
                      ....++-+|.++|....|+|+.++|+++|+|+++|+|.+                                   .+...+
T Consensus       442 ~~~~~L~GH~GPVyg~sFsPd~rfLlScSED~svRLWsl-----------------------------------~t~s~~  486 (707)
T KOG0263|consen  442 GTSRTLYGHSGPVYGCSFSPDRRFLLSCSEDSSVRLWSL-----------------------------------DTWSCL  486 (707)
T ss_pred             ceeEEeecCCCceeeeeecccccceeeccCCcceeeeec-----------------------------------ccceeE
Confidence            355668899999999999999999999999999988854                                   466777


Q ss_pred             eecccCCcceEEEEEeCCCCEEEeecCCCeEEEEECCCCeeeeeeecCCCCeeeEEEccCCCEEEEEeCCCeEEEEeCCC
Q 042146           94 KTLIGHTNYVFCINFNPQSNRIVSDTFNETIRIWDIKTGKCLKVLPAHSDPVTAIDFNRDGTMIVTSSYDGLYRILDAST  173 (262)
Q Consensus        94 ~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~d~~~  173 (262)
                      ..+++|..+|..+.|+|.|-++|+++.|++.++|.....++++.+.+|.+.|.|+.|+|+..++++|+.|.++++||..+
T Consensus       487 V~y~GH~~PVwdV~F~P~GyYFatas~D~tArLWs~d~~~PlRifaghlsDV~cv~FHPNs~Y~aTGSsD~tVRlWDv~~  566 (707)
T KOG0263|consen  487 VIYKGHLAPVWDVQFAPRGYYFATASHDQTARLWSTDHNKPLRIFAGHLSDVDCVSFHPNSNYVATGSSDRTVRLWDVST  566 (707)
T ss_pred             EEecCCCcceeeEEecCCceEEEecCCCceeeeeecccCCchhhhcccccccceEEECCcccccccCCCCceEEEEEcCC
Confidence            88889999999999999999999999999999999999999999999999999999999999999999999999999887


Q ss_pred             --------------------CCccEEEEEcCCCeEEEEecCCCceeeEEeccCCceeEEEEEEecCCCeeEEccccceEE
Q 042146          174 --------------------PNGKFILVGTLDNTLRLWNYSTRKILKTYSGYTNSKYCISSTFSVTNGKYIVSHRDPVIS  233 (262)
Q Consensus       174 --------------------~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~  233 (262)
                                          |+|.+|++|+.||.|.+||+.+++++..+.+                      |.+.|.+
T Consensus       567 G~~VRiF~GH~~~V~al~~Sp~Gr~LaSg~ed~~I~iWDl~~~~~v~~l~~----------------------Ht~ti~S  624 (707)
T KOG0263|consen  567 GNSVRIFTGHKGPVTALAFSPCGRYLASGDEDGLIKIWDLANGSLVKQLKG----------------------HTGTIYS  624 (707)
T ss_pred             CcEEEEecCCCCceEEEEEcCCCceEeecccCCcEEEEEcCCCcchhhhhc----------------------ccCceeE
Confidence                                8999999999999999999999999999998                      8899999


Q ss_pred             EEEcCCCCeEEEeeecCCCcEEEEeecc
Q 042146          234 VASHPAKNIIASGALDNDRTMKIWTQEK  261 (262)
Q Consensus       234 ~~~~p~~~~l~~~~~d~d~~i~iw~~~~  261 (262)
                      +.|+++|..||+||  .|.+|++||+.+
T Consensus       625 lsFS~dg~vLasgg--~DnsV~lWD~~~  650 (707)
T KOG0263|consen  625 LSFSRDGNVLASGG--ADNSVRLWDLTK  650 (707)
T ss_pred             EEEecCCCEEEecC--CCCeEEEEEchh
Confidence            99999999999999  899999999863

>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]

Probab=100.00  E-value=7.1e-37  Score=216.72  Aligned_cols=236  Identities=22%  Similarity=0.430  Sum_probs=191.0

Q ss_pred             CCCCceeeec-------ccccceecccCcCceEEEEEccCCCeEEEecCCCeEEEeecCCCCCCCCCCCCCCccccCCcc
Q 042146            2 SSDRSLESFR-------PYTLTQTLNGHLRAVSYVKFSHDGRLLTSSSAEKTLLTYSLSSISNFDSTPPSPLQKFTGHEQ   74 (262)
Q Consensus         2 s~d~~i~~~~-------~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~   74 (262)
                      |+|.++..|+       -..+++.++||...|..++.++||++.++++.|+++++||+...        .....|.+|..
T Consensus        35 srDk~ii~W~L~~dd~~~G~~~r~~~GHsH~v~dv~~s~dg~~alS~swD~~lrlWDl~~g--------~~t~~f~GH~~  106 (315)
T KOG0279|consen   35 SRDKTIIVWKLTSDDIKYGVPVRRLTGHSHFVSDVVLSSDGNFALSASWDGTLRLWDLATG--------ESTRRFVGHTK  106 (315)
T ss_pred             ccceEEEEEEeccCccccCceeeeeeccceEecceEEccCCceEEeccccceEEEEEecCC--------cEEEEEEecCC
Confidence            4677777664       34578999999999999999999999999999999999988653        44555666666


Q ss_pred             ccccce---------------eEEEEecCCCccceeccc-CCcceEEEEEeCC--CCEEEeecCCCeEEEEECCCCeeee
Q 042146           75 GISDLA---------------TIRLWDVPTATSLKTLIG-HTNYVFCINFNPQ--SNRIVSDTFNETIRIWDIKTGKCLK  136 (262)
Q Consensus        75 ~v~~~~---------------~i~v~d~~~~~~~~~~~~-~~~~v~~~~~~~~--~~~l~~~~~dg~i~vwd~~~~~~~~  136 (262)
                      .+.+++               +|++|+............ +.+.|+|+.|+|+  ..++++++.|++|++||+++.+...
T Consensus       107 dVlsva~s~dn~qivSGSrDkTiklwnt~g~ck~t~~~~~~~~WVscvrfsP~~~~p~Ivs~s~DktvKvWnl~~~~l~~  186 (315)
T KOG0279|consen  107 DVLSVAFSTDNRQIVSGSRDKTIKLWNTLGVCKYTIHEDSHREWVSCVRFSPNESNPIIVSASWDKTVKVWNLRNCQLRT  186 (315)
T ss_pred             ceEEEEecCCCceeecCCCcceeeeeeecccEEEEEecCCCcCcEEEEEEcCCCCCcEEEEccCCceEEEEccCCcchhh
Confidence            555444               899999865544333332 3789999999996  7899999999999999999999999


Q ss_pred             eeecCCCCeeeEEEccCCCEEEEEeCCCeEEEEeCCC-------------------CCccEEEEEcCCCeEEEEecCCCc
Q 042146          137 VLPAHSDPVTAIDFNRDGTMIVTSSYDGLYRILDAST-------------------PNGKFILVGTLDNTLRLWNYSTRK  197 (262)
Q Consensus       137 ~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~d~~~-------------------~~~~~l~~~~~dg~i~i~d~~~~~  197 (262)
                      .+.+|.+.++.+++||||.+.++|+.||.+.+||++.                   |+...|+.+.. ..|+|||++++.
T Consensus       187 ~~~gh~~~v~t~~vSpDGslcasGgkdg~~~LwdL~~~k~lysl~a~~~v~sl~fspnrywL~~at~-~sIkIwdl~~~~  265 (315)
T KOG0279|consen  187 TFIGHSGYVNTVTVSPDGSLCASGGKDGEAMLWDLNEGKNLYSLEAFDIVNSLCFSPNRYWLCAATA-TSIKIWDLESKA  265 (315)
T ss_pred             ccccccccEEEEEECCCCCEEecCCCCceEEEEEccCCceeEeccCCCeEeeEEecCCceeEeeccC-CceEEEeccchh
Confidence            9999999999999999999999999999999999987                   66666666654 459999999999


Q ss_pred             eeeEEeccCCceeEEEEEEecCCCeeEEccccceEEEEEcCCCCeEEEeeecCCCcEEEEeecc
Q 042146          198 ILKTYSGYTNSKYCISSTFSVTNGKYIVSHRDPVISVASHPAKNIIASGALDNDRTMKIWTQEK  261 (262)
Q Consensus       198 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~d~d~~i~iw~~~~  261 (262)
                      ++..++.......             .....-...+++|+++|..|++|-  .|+.|++|.+..
T Consensus       266 ~v~~l~~d~~g~s-------------~~~~~~~clslaws~dG~tLf~g~--td~~irv~qv~~  314 (315)
T KOG0279|consen  266 VVEELKLDGIGPS-------------SKAGDPICLSLAWSADGQTLFAGY--TDNVIRVWQVAK  314 (315)
T ss_pred             hhhhccccccccc-------------cccCCcEEEEEEEcCCCcEEEeee--cCCcEEEEEeec
Confidence            9988865322210             000233467889999999999998  899999999753

>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]

Probab=100.00  E-value=5.1e-36  Score=209.40  Aligned_cols=228  Identities=19%  Similarity=0.435  Sum_probs=198.4

Q ss_pred             CCCCceeeec--ccccceecccCcCceEEEEEccCCCeEEEecCCCeEEEeecCCCCCCCCCCCCCCccccCCccccccc
Q 042146            2 SSDRSLESFR--PYTLTQTLNGHLRAVSYVKFSHDGRLLTSSSAEKTLLTYSLSSISNFDSTPPSPLQKFTGHEQGISDL   79 (262)
Q Consensus         2 s~d~~i~~~~--~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~   79 (262)
                      ++|-+|+.|+  +....++++...+.|+.+...|++++||+++. ..||+||+.      ...+.+...+.+|...|..+
T Consensus        17 ~YDhTIRfWqa~tG~C~rTiqh~dsqVNrLeiTpdk~~LAaa~~-qhvRlyD~~------S~np~Pv~t~e~h~kNVtaV   89 (311)
T KOG0315|consen   17 GYDHTIRFWQALTGICSRTIQHPDSQVNRLEITPDKKDLAAAGN-QHVRLYDLN------SNNPNPVATFEGHTKNVTAV   89 (311)
T ss_pred             cCcceeeeeehhcCeEEEEEecCccceeeEEEcCCcchhhhccC-CeeEEEEcc------CCCCCceeEEeccCCceEEE
Confidence            5789999997  56788899877889999999999999999885 689999994      44556778888887777666


Q ss_pred             e---------------eEEEEecCCCccceecccCCcceEEEEEeCCCCEEEeecCCCeEEEEECCCCeeeeeee-cCCC
Q 042146           80 A---------------TIRLWDVPTATSLKTLIGHTNYVFCINFNPQSNRIVSDTFNETIRIWDIKTGKCLKVLP-AHSD  143 (262)
Q Consensus        80 ~---------------~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~-~~~~  143 (262)
                      +               +++|||++...+.+.++ |.++|+++..+|+...|++|..+|.|++||+....+...+. ....
T Consensus        90 gF~~dgrWMyTgseDgt~kIWdlR~~~~qR~~~-~~spVn~vvlhpnQteLis~dqsg~irvWDl~~~~c~~~liPe~~~  168 (311)
T KOG0315|consen   90 GFQCDGRWMYTGSEDGTVKIWDLRSLSCQRNYQ-HNSPVNTVVLHPNQTELISGDQSGNIRVWDLGENSCTHELIPEDDT  168 (311)
T ss_pred             EEeecCeEEEecCCCceEEEEeccCcccchhcc-CCCCcceEEecCCcceEEeecCCCcEEEEEccCCccccccCCCCCc
Confidence            5               99999999966666655 77999999999999999999999999999999887666553 3446


Q ss_pred             CeeeEEEccCCCEEEEEeCCCeEEEEeCCC--------------------------CCccEEEEEcCCCeEEEEecCCC-
Q 042146          144 PVTAIDFNRDGTMIVTSSYDGLYRILDAST--------------------------PNGKFILVGTLDNTLRLWNYSTR-  196 (262)
Q Consensus       144 ~v~~~~~~~~~~~l~~~~~dg~i~~~d~~~--------------------------~~~~~l~~~~~dg~i~i~d~~~~-  196 (262)
                      +|.++...|+|.+|+.+...|+.++|++..                          |++++|++++.|.+++||+.++. 
T Consensus       169 ~i~sl~v~~dgsml~a~nnkG~cyvW~l~~~~~~s~l~P~~k~~ah~~~il~C~lSPd~k~lat~ssdktv~iwn~~~~~  248 (311)
T KOG0315|consen  169 SIQSLTVMPDGSMLAAANNKGNCYVWRLLNHQTASELEPVHKFQAHNGHILRCLLSPDVKYLATCSSDKTVKIWNTDDFF  248 (311)
T ss_pred             ceeeEEEcCCCcEEEEecCCccEEEEEccCCCccccceEhhheecccceEEEEEECCCCcEEEeecCCceEEEEecCCce
Confidence            899999999999999999999999999865                          89999999999999999999987 


Q ss_pred             ceeeEEeccCCceeEEEEEEecCCCeeEEccccceEEEEEcCCCCeEEEeeecCCCcEEEEeecc
Q 042146          197 KILKTYSGYTNSKYCISSTFSVTNGKYIVSHRDPVISVASHPAKNIIASGALDNDRTMKIWTQEK  261 (262)
Q Consensus       197 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~d~d~~i~iw~~~~  261 (262)
                      +....+.+                      |...+..++||.++.+|+||+  .|+.+++|++..
T Consensus       249 kle~~l~g----------------------h~rWvWdc~FS~dg~YlvTas--sd~~~rlW~~~~  289 (311)
T KOG0315|consen  249 KLELVLTG----------------------HQRWVWDCAFSADGEYLVTAS--SDHTARLWDLSA  289 (311)
T ss_pred             eeEEEeec----------------------CCceEEeeeeccCccEEEecC--CCCceeeccccc
Confidence            55555555                      889999999999999999999  899999999864

>KOG0286 consensus G-protein beta subunit [General function prediction only]

Probab=100.00  E-value=8.4e-36  Score=212.66  Aligned_cols=226  Identities=23%  Similarity=0.399  Sum_probs=189.2

Q ss_pred             ccccceecccCcCceEEEEEccCCCeEEEecCCCeEEEeecCCCCCCCCCCCCCCcc----ccCCccccccce---eEEE
Q 042146           12 PYTLTQTLNGHLRAVSYVKFSHDGRLLTSSSAEKTLLTYSLSSISNFDSTPPSPLQK----FTGHEQGISDLA---TIRL   84 (262)
Q Consensus        12 ~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~----~~~~~~~v~~~~---~i~v   84 (262)
                      .++..++|++|.+.|.++.|++|+++|+++|.||.+.|||.-+.......+......    +.+....|.+-+   ...|
T Consensus        44 ~~~~rr~LkGH~~Ki~~~~ws~Dsr~ivSaSqDGklIvWDs~TtnK~haipl~s~WVMtCA~sPSg~~VAcGGLdN~Csi  123 (343)
T KOG0286|consen   44 QMRTRRTLKGHLNKIYAMDWSTDSRRIVSASQDGKLIVWDSFTTNKVHAIPLPSSWVMTCAYSPSGNFVACGGLDNKCSI  123 (343)
T ss_pred             eeeeEEEecccccceeeeEecCCcCeEEeeccCCeEEEEEcccccceeEEecCceeEEEEEECCCCCeEEecCcCceeEE
Confidence            345668999999999999999999999999999999999976544433333332222    222223332222   6778


Q ss_pred             EecCCC------ccceecccCCcceEEEEEeCCCCEEEeecCCCeEEEEECCCCeeeeeeecCCCCeeeEEEcc-CCCEE
Q 042146           85 WDVPTA------TSLKTLIGHTNYVFCINFNPQSNRIVSDTFNETIRIWDIKTGKCLKVLPAHSDPVTAIDFNR-DGTMI  157 (262)
Q Consensus        85 ~d~~~~------~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l  157 (262)
                      |++.+.      ...+.+.+|.+.+.|+.|-+ ...|++++.|.+..+||+++++.+..+.+|.+.|.++.++| +++.|
T Consensus       124 y~ls~~d~~g~~~v~r~l~gHtgylScC~f~d-D~~ilT~SGD~TCalWDie~g~~~~~f~GH~gDV~slsl~p~~~ntF  202 (343)
T KOG0286|consen  124 YPLSTRDAEGNVRVSRELAGHTGYLSCCRFLD-DNHILTGSGDMTCALWDIETGQQTQVFHGHTGDVMSLSLSPSDGNTF  202 (343)
T ss_pred             EecccccccccceeeeeecCccceeEEEEEcC-CCceEecCCCceEEEEEcccceEEEEecCCcccEEEEecCCCCCCeE
Confidence            887754      34567899999999999987 56788999999999999999999999999999999999999 99999


Q ss_pred             EEEeCCCeEEEEeCCC--------------------CCccEEEEEcCCCeEEEEecCCCceeeEEeccCCceeEEEEEEe
Q 042146          158 VTSSYDGLYRILDAST--------------------PNGKFILVGTLDNTLRLWNYSTRKILKTYSGYTNSKYCISSTFS  217 (262)
Q Consensus       158 ~~~~~dg~i~~~d~~~--------------------~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~  217 (262)
                      ++|+.|+..++||+|.                    |+|.-+++|++|++.++||++..+.+..+....           
T Consensus       203 vSg~cD~~aklWD~R~~~c~qtF~ghesDINsv~ffP~G~afatGSDD~tcRlyDlRaD~~~a~ys~~~-----------  271 (343)
T KOG0286|consen  203 VSGGCDKSAKLWDVRSGQCVQTFEGHESDINSVRFFPSGDAFATGSDDATCRLYDLRADQELAVYSHDS-----------  271 (343)
T ss_pred             EecccccceeeeeccCcceeEeecccccccceEEEccCCCeeeecCCCceeEEEeecCCcEEeeeccCc-----------
Confidence            9999999999999998                    899999999999999999999999998887422           


Q ss_pred             cCCCeeEEccccceEEEEEcCCCCeEEEeeecCCCcEEEEeec
Q 042146          218 VTNGKYIVSHRDPVISVASHPAKNIIASGALDNDRTMKIWTQE  260 (262)
Q Consensus       218 ~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~d~d~~i~iw~~~  260 (262)
                               -..+|++++||..|++|++|.  .|.++.+||.-
T Consensus       272 ---------~~~gitSv~FS~SGRlLfagy--~d~~c~vWDtl  303 (343)
T KOG0286|consen  272 ---------IICGITSVAFSKSGRLLFAGY--DDFTCNVWDTL  303 (343)
T ss_pred             ---------ccCCceeEEEcccccEEEeee--cCCceeEeecc
Confidence                     456899999999999999998  89999999963

>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]

Probab=100.00  E-value=3.3e-35  Score=224.55  Aligned_cols=221  Identities=23%  Similarity=0.466  Sum_probs=186.6

Q ss_pred             CCCCceeeec--ccccceecccCcCceEEEEEccCCCeEEEecCCCeEEEeecCCCCCCCCCCCCCCccccCCccccccc
Q 042146            2 SSDRSLESFR--PYTLTQTLNGHLRAVSYVKFSHDGRLLTSSSAEKTLLTYSLSSISNFDSTPPSPLQKFTGHEQGISDL   79 (262)
Q Consensus         2 s~d~~i~~~~--~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~   79 (262)
                      +.|+++..|+  ||++..+++.|..-|.|+.|+|||.+||+++.||++.+||                            
T Consensus       167 sdDn~v~ffeGPPFKFk~s~r~HskFV~~VRysPDG~~Fat~gsDgki~iyD----------------------------  218 (603)
T KOG0318|consen  167 SDDNTVAFFEGPPFKFKSSFREHSKFVNCVRYSPDGSRFATAGSDGKIYIYD----------------------------  218 (603)
T ss_pred             cCCCeEEEeeCCCeeeeecccccccceeeEEECCCCCeEEEecCCccEEEEc----------------------------
Confidence            5689999996  8999999999999999999999999999999999988884                            


Q ss_pred             eeEEEEecCCCccceecc---cCCcceEEEEEeCCCCEEEeecCCCeEEEEECCCCeeeee-------------------
Q 042146           80 ATIRLWDVPTATSLKTLI---GHTNYVFCINFNPQSNRIVSDTFNETIRIWDIKTGKCLKV-------------------  137 (262)
Q Consensus        80 ~~i~v~d~~~~~~~~~~~---~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~-------------------  137 (262)
                             -.+++.+..+.   +|++.|.+++|+||+..+++++.|.+++|||+.+++++++                   
T Consensus       219 -------Gktge~vg~l~~~~aHkGsIfalsWsPDs~~~~T~SaDkt~KIWdVs~~slv~t~~~~~~v~dqqvG~lWqkd  291 (603)
T KOG0318|consen  219 -------GKTGEKVGELEDSDAHKGSIFALSWSPDSTQFLTVSADKTIKIWDVSTNSLVSTWPMGSTVEDQQVGCLWQKD  291 (603)
T ss_pred             -------CCCccEEEEecCCCCccccEEEEEECCCCceEEEecCCceEEEEEeeccceEEEeecCCchhceEEEEEEeCC
Confidence                   45666666665   8999999999999999999999999999999987654432                   


Q ss_pred             ------------------------eecCCCCeeeEEEccCCCEEEEEeCCCeEEEEeCCC--------------------
Q 042146          138 ------------------------LPAHSDPVTAIDFNRDGTMIVTSSYDGLYRILDAST--------------------  173 (262)
Q Consensus       138 ------------------------~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~d~~~--------------------  173 (262)
                                              +.+|...|+++..+|++++|++|+.||.|.-|+..+                    
T Consensus       292 ~lItVSl~G~in~ln~~d~~~~~~i~GHnK~ITaLtv~~d~~~i~SgsyDG~I~~W~~~~g~~~~~~g~~h~nqI~~~~~  371 (603)
T KOG0318|consen  292 HLITVSLSGTINYLNPSDPSVLKVISGHNKSITALTVSPDGKTIYSGSYDGHINSWDSGSGTSDRLAGKGHTNQIKGMAA  371 (603)
T ss_pred             eEEEEEcCcEEEEecccCCChhheecccccceeEEEEcCCCCEEEeeccCceEEEEecCCccccccccccccceEEEEee
Confidence                                    347999999999999999999999999999999765                    


Q ss_pred             --------------------------------------------------------------------------------
Q 042146          174 --------------------------------------------------------------------------------  173 (262)
Q Consensus       174 --------------------------------------------------------------------------------  173 (262)
                                                                                                      
T Consensus       372 ~~~~~~~t~g~Dd~l~~~~~~~~~~t~~~~~~lg~QP~~lav~~d~~~avv~~~~~iv~l~~~~~~~~~~~~y~~s~vAv  451 (603)
T KOG0318|consen  372 SESGELFTIGWDDTLRVISLKDNGYTKSEVVKLGSQPKGLAVLSDGGTAVVACISDIVLLQDQTKVSSIPIGYESSAVAV  451 (603)
T ss_pred             cCCCcEEEEecCCeEEEEecccCcccccceeecCCCceeEEEcCCCCEEEEEecCcEEEEecCCcceeeccccccceEEE
Confidence                                                                                            


Q ss_pred             -CCccEEEEEcCCCeEEEEecCCCceeeE--EeccCCceeEEEEEEecCCCeeEEc-----------------------c
Q 042146          174 -PNGKFILVGTLDNTLRLWNYSTRKILKT--YSGYTNSKYCISSTFSVTNGKYIVS-----------------------H  227 (262)
Q Consensus       174 -~~~~~l~~~~~dg~i~i~d~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~-----------------------~  227 (262)
                       |++.++++|+.||.|+||.+..+.+...  ...|...+.++  .++++..++.++                       |
T Consensus       452 ~~~~~~vaVGG~Dgkvhvysl~g~~l~ee~~~~~h~a~iT~v--aySpd~~yla~~Da~rkvv~yd~~s~~~~~~~w~FH  529 (603)
T KOG0318|consen  452 SPDGSEVAVGGQDGKVHVYSLSGDELKEEAKLLEHRAAITDV--AYSPDGAYLAAGDASRKVVLYDVASREVKTNRWAFH  529 (603)
T ss_pred             cCCCCEEEEecccceEEEEEecCCcccceeeeecccCCceEE--EECCCCcEEEEeccCCcEEEEEcccCceecceeeee
Confidence             7899999999999999999987664433  34444444444  444433333333                       9


Q ss_pred             ccceEEEEEcCCCCeEEEeeecCCCcEEEEeecc
Q 042146          228 RDPVISVASHPAKNIIASGALDNDRTMKIWTQEK  261 (262)
Q Consensus       228 ~~~v~~~~~~p~~~~l~~~~~d~d~~i~iw~~~~  261 (262)
                      ..+|.+++|+|+..++|||+  -|-+|.||++++
T Consensus       530 takI~~~aWsP~n~~vATGS--lDt~Viiysv~k  561 (603)
T KOG0318|consen  530 TAKINCVAWSPNNKLVATGS--LDTNVIIYSVKK  561 (603)
T ss_pred             eeeEEEEEeCCCceEEEecc--ccceEEEEEccC
Confidence            99999999999999999999  789999999875

>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]

Probab=100.00  E-value=6.9e-37  Score=227.04  Aligned_cols=235  Identities=24%  Similarity=0.464  Sum_probs=193.1

Q ss_pred             CCCceeeec--ccccceecccCcCceEEEEEccCCCeEEEecCCCeEEEeecCCC--CCCCCCCCCCCcccc--CCc---
Q 042146            3 SDRSLESFR--PYTLTQTLNGHLRAVSYVKFSHDGRLLTSSSAEKTLLTYSLSSI--SNFDSTPPSPLQKFT--GHE---   73 (262)
Q Consensus         3 ~d~~i~~~~--~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~iw~~~~~--~~~~~~~~~~~~~~~--~~~---   73 (262)
                      +.|....|.  .+.....+++|..+|+++.|++++.++++|+.+|.|++|+..-.  +.........+..+.  ...   
T Consensus       116 ~SGEFtLWNg~~fnFEtilQaHDs~Vr~m~ws~~g~wmiSgD~gG~iKyWqpnmnnVk~~~ahh~eaIRdlafSpnDskF  195 (464)
T KOG0284|consen  116 QSGEFTLWNGTSFNFETILQAHDSPVRTMKWSHNGTWMISGDKGGMIKYWQPNMNNVKIIQAHHAEAIRDLAFSPNDSKF  195 (464)
T ss_pred             ccccEEEecCceeeHHHHhhhhcccceeEEEccCCCEEEEcCCCceEEecccchhhhHHhhHhhhhhhheeccCCCCcee
Confidence            446556665  56667778999999999999999999999999999999976431  111111111111111  111   


Q ss_pred             cccccceeEEEEecCCCccceecccCCcceEEEEEeCCCCEEEeecCCCeEEEEECCCCeeeeeeecCCCCeeeEEEccC
Q 042146           74 QGISDLATIRLWDVPTATSLKTLIGHTNYVFCINFNPQSNRIVSDTFNETIRIWDIKTGKCLKVLPAHSDPVTAIDFNRD  153 (262)
Q Consensus        74 ~~v~~~~~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~  153 (262)
                      ......+.|+|||....+....+.+|...|.++.|+|...++++|+.|..|++||.++++++.++..|+..|..+.|+|+
T Consensus       196 ~t~SdDg~ikiWdf~~~kee~vL~GHgwdVksvdWHP~kgLiasgskDnlVKlWDprSg~cl~tlh~HKntVl~~~f~~n  275 (464)
T KOG0284|consen  196 LTCSDDGTIKIWDFRMPKEERVLRGHGWDVKSVDWHPTKGLIASGSKDNLVKLWDPRSGSCLATLHGHKNTVLAVKFNPN  275 (464)
T ss_pred             EEecCCCeEEEEeccCCchhheeccCCCCcceeccCCccceeEEccCCceeEeecCCCcchhhhhhhccceEEEEEEcCC
Confidence            11233448999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCEEEEEeCCCeEEEEeCCC---------------------CCccEEEEEcCCCeEEEEecCCCceeeEEeccCCceeEE
Q 042146          154 GTMIVTSSYDGLYRILDAST---------------------PNGKFILVGTLDNTLRLWNYSTRKILKTYSGYTNSKYCI  212 (262)
Q Consensus       154 ~~~l~~~~~dg~i~~~d~~~---------------------~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~  212 (262)
                      +++|++++.|..+++||++.                     ....+|.+|+.||.|..|.+...+++..+..        
T Consensus       276 ~N~Llt~skD~~~kv~DiR~mkEl~~~r~Hkkdv~~~~WhP~~~~lftsgg~Dgsvvh~~v~~~~p~~~i~~--------  347 (464)
T KOG0284|consen  276 GNWLLTGSKDQSCKVFDIRTMKELFTYRGHKKDVTSLTWHPLNESLFTSGGSDGSVVHWVVGLEEPLGEIPP--------  347 (464)
T ss_pred             CCeeEEccCCceEEEEehhHhHHHHHhhcchhhheeeccccccccceeeccCCCceEEEeccccccccCCCc--------
Confidence            99999999999999999995                     4667899999999999999885555554432        


Q ss_pred             EEEEecCCCeeEEccccceEEEEEcCCCCeEEEeeecCCCcEEEEeec
Q 042146          213 SSTFSVTNGKYIVSHRDPVISVASHPAKNIIASGALDNDRTMKIWTQE  260 (262)
Q Consensus       213 ~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~d~d~~i~iw~~~  260 (262)
                                   +|...|.+++|+|-|.+|++|+  .|.++++|.-+
T Consensus       348 -------------AHd~~iwsl~~hPlGhil~tgs--nd~t~rfw~r~  380 (464)
T KOG0284|consen  348 -------------AHDGEIWSLAYHPLGHILATGS--NDRTVRFWTRN  380 (464)
T ss_pred             -------------ccccceeeeeccccceeEeecC--CCcceeeeccC
Confidence                         1999999999999999999999  99999999754

>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=100.00  E-value=1.2e-35  Score=235.62  Aligned_cols=156  Identities=26%  Similarity=0.606  Sum_probs=147.5

Q ss_pred             eEEEEecCCCccceecccCCcceEEEEEeCCCCEEEeecCCCeEEEEECCCCeeeeeeecCCCCeeeEEEccCCCEEEEE
Q 042146           81 TIRLWDVPTATSLKTLIGHTNYVFCINFNPQSNRIVSDTFNETIRIWDIKTGKCLKVLPAHSDPVTAIDFNRDGTMIVTS  160 (262)
Q Consensus        81 ~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~  160 (262)
                      .+.||+......+...++|...+++++++|||+++++|++||+|+|||..++-|..++..|++.|+.+.|+..++.++++
T Consensus       331 QLlVweWqsEsYVlKQQgH~~~i~~l~YSpDgq~iaTG~eDgKVKvWn~~SgfC~vTFteHts~Vt~v~f~~~g~~llss  410 (893)
T KOG0291|consen  331 QLLVWEWQSESYVLKQQGHSDRITSLAYSPDGQLIATGAEDGKVKVWNTQSGFCFVTFTEHTSGVTAVQFTARGNVLLSS  410 (893)
T ss_pred             eEEEEEeeccceeeeccccccceeeEEECCCCcEEEeccCCCcEEEEeccCceEEEEeccCCCceEEEEEEecCCEEEEe
Confidence            78889988888888889999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             eCCCeEEEEeCCC---------------------CCccEEEEEcCCC-eEEEEecCCCceeeEEeccCCceeEEEEEEec
Q 042146          161 SYDGLYRILDAST---------------------PNGKFILVGTLDN-TLRLWNYSTRKILKTYSGYTNSKYCISSTFSV  218 (262)
Q Consensus       161 ~~dg~i~~~d~~~---------------------~~~~~l~~~~~dg-~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~  218 (262)
                      +.||+|+.||+..                     |.|..+++|+.|. .|.+|++.+|+++..+.+              
T Consensus       411 SLDGtVRAwDlkRYrNfRTft~P~p~QfscvavD~sGelV~AG~~d~F~IfvWS~qTGqllDiLsG--------------  476 (893)
T KOG0291|consen  411 SLDGTVRAWDLKRYRNFRTFTSPEPIQFSCVAVDPSGELVCAGAQDSFEIFVWSVQTGQLLDILSG--------------  476 (893)
T ss_pred             ecCCeEEeeeecccceeeeecCCCceeeeEEEEcCCCCEEEeeccceEEEEEEEeecCeeeehhcC--------------
Confidence            9999999999876                     6789999998875 799999999999999998              


Q ss_pred             CCCeeEEccccceEEEEEcCCCCeEEEeeecCCCcEEEEeec
Q 042146          219 TNGKYIVSHRDPVISVASHPAKNIIASGALDNDRTMKIWTQE  260 (262)
Q Consensus       219 ~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~d~d~~i~iw~~~  260 (262)
                              |++||.+++|+|++..|+++|  -|.+||+|++-
T Consensus       477 --------HEgPVs~l~f~~~~~~LaS~S--WDkTVRiW~if  508 (893)
T KOG0291|consen  477 --------HEGPVSGLSFSPDGSLLASGS--WDKTVRIWDIF  508 (893)
T ss_pred             --------CCCcceeeEEccccCeEEecc--ccceEEEEEee
Confidence                    999999999999999999999  56999999973

>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]

Probab=100.00  E-value=6.4e-36  Score=218.85  Aligned_cols=234  Identities=18%  Similarity=0.386  Sum_probs=185.8

Q ss_pred             ccccceecccCcCceEEEEEccCCCeEEEecCCCeEEEeecCCCCCCCCCCCC-----CCccccCCcc--ccccceeEEE
Q 042146           12 PYTLTQTLNGHLRAVSYVKFSHDGRLLTSSSAEKTLLTYSLSSISNFDSTPPS-----PLQKFTGHEQ--GISDLATIRL   84 (262)
Q Consensus        12 ~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~-----~~~~~~~~~~--~v~~~~~i~v   84 (262)
                      ++++.+.+++|.+.|+|+++.|-..+|++|+.|++++|||+.+........+.     .+.....|..  .......|+.
T Consensus       140 pwKl~rVi~gHlgWVr~vavdP~n~wf~tgs~DrtikIwDlatg~LkltltGhi~~vr~vavS~rHpYlFs~gedk~VKC  219 (460)
T KOG0285|consen  140 PWKLYRVISGHLGWVRSVAVDPGNEWFATGSADRTIKIWDLATGQLKLTLTGHIETVRGVAVSKRHPYLFSAGEDKQVKC  219 (460)
T ss_pred             cceehhhhhhccceEEEEeeCCCceeEEecCCCceeEEEEcccCeEEEeecchhheeeeeeecccCceEEEecCCCeeEE
Confidence            78899999999999999999999999999999999999998875443222210     0111111111  1112238999


Q ss_pred             EecCCCccceecccCCcceEEEEEeCCCCEEEeecCCCeEEEEECCCCeeeeeeecCCCCeeeEEEccCCCEEEEEeCCC
Q 042146           85 WDVPTATSLKTLIGHTNYVFCINFNPQSNRIVSDTFNETIRIWDIKTGKCLKVLPAHSDPVTAIDFNRDGTMIVTSSYDG  164 (262)
Q Consensus        85 ~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg  164 (262)
                      ||++..+.++.+.+|-..|.|++.+|.-..|++|+.|.+++|||+++...+..+.+|..+|..+.+.|-...+++|+.|+
T Consensus       220 wDLe~nkvIR~YhGHlS~V~~L~lhPTldvl~t~grDst~RvWDiRtr~~V~~l~GH~~~V~~V~~~~~dpqvit~S~D~  299 (460)
T KOG0285|consen  220 WDLEYNKVIRHYHGHLSGVYCLDLHPTLDVLVTGGRDSTIRVWDIRTRASVHVLSGHTNPVASVMCQPTDPQVITGSHDS  299 (460)
T ss_pred             EechhhhhHHHhccccceeEEEeccccceeEEecCCcceEEEeeecccceEEEecCCCCcceeEEeecCCCceEEecCCc
Confidence            99999999999999999999999999999999999999999999999999999999999999999999888899999999


Q ss_pred             eEEEEeCCC------------------------------------------------------------CCccEEEEEcC
Q 042146          165 LYRILDAST------------------------------------------------------------PNGKFILVGTL  184 (262)
Q Consensus       165 ~i~~~d~~~------------------------------------------------------------~~~~~l~~~~~  184 (262)
                      +|++||++.                                                            ....++++|++
T Consensus       300 tvrlWDl~agkt~~tlt~hkksvral~lhP~e~~fASas~dnik~w~~p~g~f~~nlsgh~~iintl~~nsD~v~~~G~d  379 (460)
T KOG0285|consen  300 TVRLWDLRAGKTMITLTHHKKSVRALCLHPKENLFASASPDNIKQWKLPEGEFLQNLSGHNAIINTLSVNSDGVLVSGGD  379 (460)
T ss_pred             eEEEeeeccCceeEeeecccceeeEEecCCchhhhhccCCccceeccCCccchhhccccccceeeeeeeccCceEEEcCC
Confidence            999999886                                                            23456667777


Q ss_pred             CCeEEEEecCCCceeeEEeccCCceeEEEEEEecCCCeeEEccccceEEEEEcCCCCeEEEeeecCCCcEEEEeecc
Q 042146          185 DNTLRLWNYSTRKILKTYSGYTNSKYCISSTFSVTNGKYIVSHRDPVISVASHPAKNIIASGALDNDRTMKIWTQEK  261 (262)
Q Consensus       185 dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~d~d~~i~iw~~~~  261 (262)
                      +|.+.+||.++|...+..+....+...              ..+..|.+.+|...|..|++|.  .|.+|++|+-++
T Consensus       380 ng~~~fwdwksg~nyQ~~~t~vqpGSl--------------~sEagI~as~fDktg~rlit~e--adKtIk~~keDe  440 (460)
T KOG0285|consen  380 NGSIMFWDWKSGHNYQRGQTIVQPGSL--------------ESEAGIFASCFDKTGSRLITGE--ADKTIKMYKEDE  440 (460)
T ss_pred             ceEEEEEecCcCcccccccccccCCcc--------------ccccceeEEeecccCceEEecc--CCcceEEEeccc
Confidence            777777777766554444221111000              0566799999999999999999  899999998654

>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]

Probab=100.00  E-value=6.9e-36  Score=237.87  Aligned_cols=217  Identities=26%  Similarity=0.496  Sum_probs=182.4

Q ss_pred             eecccCcCceEEEEEccCCCeEEEecCCCeEEEeecCCCCCCCCCCCCCCccccCCccccccceeEEEEecCCCccceec
Q 042146           17 QTLNGHLRAVSYVKFSHDGRLLTSSSAEKTLLTYSLSSISNFDSTPPSPLQKFTGHEQGISDLATIRLWDVPTATSLKTL   96 (262)
Q Consensus        17 ~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~i~v~d~~~~~~~~~~   96 (262)
                      .++..-...++|..|++++.+||.|-.|..|++|.+.+.+.........+....-.    .+.-.+.+.|-.......++
T Consensus       372 YT~~nt~~~v~ca~fSddssmlA~Gf~dS~i~~~Sl~p~kl~~lk~~~~l~~~d~~----sad~~~~~~D~~~~~~~~~L  447 (707)
T KOG0263|consen  372 YTFHNTYQGVTCAEFSDDSSMLACGFVDSSVRVWSLTPKKLKKLKDASDLSNIDTE----SADVDVDMLDDDSSGTSRTL  447 (707)
T ss_pred             EEEEEcCCcceeEeecCCcchhhccccccEEEEEecchhhhccccchhhhcccccc----ccchhhhhccccCCceeEEe
Confidence            34444456799999999999999999999999998875322111111111111000    00112445566666677789


Q ss_pred             ccCCcceEEEEEeCCCCEEEeecCCCeEEEEECCCCeeeeeeecCCCCeeeEEEccCCCEEEEEeCCCeEEEEeCCC---
Q 042146           97 IGHTNYVFCINFNPQSNRIVSDTFNETIRIWDIKTGKCLKVLPAHSDPVTAIDFNRDGTMIVTSSYDGLYRILDAST---  173 (262)
Q Consensus        97 ~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~d~~~---  173 (262)
                      .+|.++|....|+|+.++|+++++|+++++|.+.+..++..+++|..||+++.|+|.|-+|++++.|++.++|....   
T Consensus       448 ~GH~GPVyg~sFsPd~rfLlScSED~svRLWsl~t~s~~V~y~GH~~PVwdV~F~P~GyYFatas~D~tArLWs~d~~~P  527 (707)
T KOG0263|consen  448 YGHSGPVYGCSFSPDRRFLLSCSEDSSVRLWSLDTWSCLVIYKGHLAPVWDVQFAPRGYYFATASHDQTARLWSTDHNKP  527 (707)
T ss_pred             ecCCCceeeeeecccccceeeccCCcceeeeecccceeEEEecCCCcceeeEEecCCceEEEecCCCceeeeeecccCCc
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999765   


Q ss_pred             -----------------CCccEEEEEcCCCeEEEEecCCCceeeEEeccCCceeEEEEEEecCCCeeEEccccceEEEEE
Q 042146          174 -----------------PNGKFILVGTLDNTLRLWNYSTRKILKTYSGYTNSKYCISSTFSVTNGKYIVSHRDPVISVAS  236 (262)
Q Consensus       174 -----------------~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~  236 (262)
                                       |+..|+++|+.|.++++||..+|..++.|.+                      |.++|.+++|
T Consensus       528 lRifaghlsDV~cv~FHPNs~Y~aTGSsD~tVRlWDv~~G~~VRiF~G----------------------H~~~V~al~~  585 (707)
T KOG0263|consen  528 LRIFAGHLSDVDCVSFHPNSNYVATGSSDRTVRLWDVSTGNSVRIFTG----------------------HKGPVTALAF  585 (707)
T ss_pred             hhhhcccccccceEEECCcccccccCCCCceEEEEEcCCCcEEEEecC----------------------CCCceEEEEE
Confidence                             9999999999999999999999999999988                      9999999999


Q ss_pred             cCCCCeEEEeeecCCCcEEEEeecc
Q 042146          237 HPAKNIIASGALDNDRTMKIWTQEK  261 (262)
Q Consensus       237 ~p~~~~l~~~~~d~d~~i~iw~~~~  261 (262)
                      ||+|++|++|+  +||.|++||+..
T Consensus       586 Sp~Gr~LaSg~--ed~~I~iWDl~~  608 (707)
T KOG0263|consen  586 SPCGRYLASGD--EDGLIKIWDLAN  608 (707)
T ss_pred             cCCCceEeecc--cCCcEEEEEcCC
Confidence            99999999999  999999999864

>KOG0295 consensus WD40 repeat-containing protein [Function unknown]

Probab=100.00  E-value=1.4e-35  Score=217.09  Aligned_cols=217  Identities=32%  Similarity=0.544  Sum_probs=194.0

Q ss_pred             cccceecccCcCceEEEEEccCCCeEEEecCCCeEEEeecCCCCCCCCCCCCCCccccCCccccccce------------
Q 042146           13 YTLTQTLNGHLRAVSYVKFSHDGRLLTSSSAEKTLLTYSLSSISNFDSTPPSPLQKFTGHEQGISDLA------------   80 (262)
Q Consensus        13 ~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~------------   80 (262)
                      ..+.+.+.+|..+|+.+-|+|+-..++++++|++|++||+.+...        ...+.+|...+..+.            
T Consensus        98 p~l~~~l~g~r~~vt~v~~hp~~~~v~~as~d~tikv~D~~tg~~--------e~~LrGHt~sv~di~~~a~Gk~l~tcS  169 (406)
T KOG0295|consen   98 PNLVQKLAGHRSSVTRVIFHPSEALVVSASEDATIKVFDTETGEL--------ERSLRGHTDSVFDISFDASGKYLATCS  169 (406)
T ss_pred             CCchhhhhccccceeeeeeccCceEEEEecCCceEEEEEccchhh--------hhhhhccccceeEEEEecCccEEEecC
Confidence            367788889999999999999999999999999999998876443        344455554443332            


Q ss_pred             ---eEEEEecCC-CccceecccCCcceEEEEEeCCCCEEEeecCCCeEEEEECCCCeeeeeeecCCCCeeeEEEccCCCE
Q 042146           81 ---TIRLWDVPT-ATSLKTLIGHTNYVFCINFNPQSNRIVSDTFNETIRIWDIKTGKCLKVLPAHSDPVTAIDFNRDGTM  156 (262)
Q Consensus        81 ---~i~v~d~~~-~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~  156 (262)
                         .+++||..+ .++++.+.+|...|.+++|-|.|.++++++.|.+|+.|++.++-++.++.+|..-|..++.+.||.+
T Consensus       170 sDl~~~LWd~~~~~~c~ks~~gh~h~vS~V~f~P~gd~ilS~srD~tik~We~~tg~cv~t~~~h~ewvr~v~v~~DGti  249 (406)
T KOG0295|consen  170 SDLSAKLWDFDTFFRCIKSLIGHEHGVSSVFFLPLGDHILSCSRDNTIKAWECDTGYCVKTFPGHSEWVRMVRVNQDGTI  249 (406)
T ss_pred             CccchhheeHHHHHHHHHHhcCcccceeeEEEEecCCeeeecccccceeEEecccceeEEeccCchHhEEEEEecCCeeE
Confidence               589999987 5678888999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEEEeCCCeEEEEeCCC-----------------------------------CCccEEEEEcCCCeEEEEecCCCceeeE
Q 042146          157 IVTSSYDGLYRILDAST-----------------------------------PNGKFILVGTLDNTLRLWNYSTRKILKT  201 (262)
Q Consensus       157 l~~~~~dg~i~~~d~~~-----------------------------------~~~~~l~~~~~dg~i~i~d~~~~~~~~~  201 (262)
                      +++|+.|.++++|-+.+                                   ..++++.+++.|++|++||+.++.++.+
T Consensus       250 ~As~s~dqtl~vW~~~t~~~k~~lR~hEh~vEci~wap~~~~~~i~~at~~~~~~~~l~s~SrDktIk~wdv~tg~cL~t  329 (406)
T KOG0295|consen  250 IASCSNDQTLRVWVVATKQCKAELREHEHPVECIAWAPESSYPSISEATGSTNGGQVLGSGSRDKTIKIWDVSTGMCLFT  329 (406)
T ss_pred             EEecCCCceEEEEEeccchhhhhhhccccceEEEEecccccCcchhhccCCCCCccEEEeecccceEEEEeccCCeEEEE
Confidence            99999999999998765                                   2357999999999999999999999999


Q ss_pred             EeccCCceeEEEEEEecCCCeeEEccccceEEEEEcCCCCeEEEeeecCCCcEEEEeecc
Q 042146          202 YSGYTNSKYCISSTFSVTNGKYIVSHRDPVISVASHPAKNIIASGALDNDRTMKIWTQEK  261 (262)
Q Consensus       202 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~d~d~~i~iw~~~~  261 (262)
                      +.+                      |...|..++|+|.|++|+++.  +|+++++||+++
T Consensus       330 L~g----------------------hdnwVr~~af~p~Gkyi~Sca--DDktlrvwdl~~  365 (406)
T KOG0295|consen  330 LVG----------------------HDNWVRGVAFSPGGKYILSCA--DDKTLRVWDLKN  365 (406)
T ss_pred             Eec----------------------ccceeeeeEEcCCCeEEEEEe--cCCcEEEEEecc
Confidence            998                      999999999999999999999  899999999975

>KOG0282 consensus mRNA splicing factor [Function unknown]

Probab=100.00  E-value=1.6e-36  Score=229.44  Aligned_cols=219  Identities=27%  Similarity=0.547  Sum_probs=193.0

Q ss_pred             eeecccccceecccCcCceEEEEEcc-CCCeEEEecCCCeEEEeecCCCCCCCCCCCCCCccccCCccccccce------
Q 042146            8 ESFRPYTLTQTLNGHLRAVSYVKFSH-DGRLLTSSSAEKTLLTYSLSSISNFDSTPPSPLQKFTGHEQGISDLA------   80 (262)
Q Consensus         8 ~~~~~~~~~~~~~~h~~~v~~~~~~~-~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~------   80 (262)
                      +-|-|-+.++++.+|+..|+++.|.| .+.+|++++.|+.|+||++-.       ....+..+.+|..+|..+.      
T Consensus       199 rc~~Pkk~~~~~~gH~kgvsai~~fp~~~hLlLS~gmD~~vklW~vy~-------~~~~lrtf~gH~k~Vrd~~~s~~g~  271 (503)
T KOG0282|consen  199 RCYLPKKLSHNLSGHTKGVSAIQWFPKKGHLLLSGGMDGLVKLWNVYD-------DRRCLRTFKGHRKPVRDASFNNCGT  271 (503)
T ss_pred             eeeccHhheeeccCCccccchhhhccceeeEEEecCCCceEEEEEEec-------CcceehhhhcchhhhhhhhccccCC
Confidence            44557788999999999999999999 899999999999999998743       3555666777776665544      


Q ss_pred             ---------eEEEEecCCCccceecccCCcceEEEEEeCCC-CEEEeecCCCeEEEEECCCCeeeeeeecCCCCeeeEEE
Q 042146           81 ---------TIRLWDVPTATSLKTLIGHTNYVFCINFNPQS-NRIVSDTFNETIRIWDIKTGKCLKVLPAHSDPVTAIDF  150 (262)
Q Consensus        81 ---------~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~  150 (262)
                               .|++||.++|+++..+. ....++|+.|+|++ +.+++|+.|+.|+.||+++++.++++..|-+.|..+.|
T Consensus       272 ~fLS~sfD~~lKlwDtETG~~~~~f~-~~~~~~cvkf~pd~~n~fl~G~sd~ki~~wDiRs~kvvqeYd~hLg~i~~i~F  350 (503)
T KOG0282|consen  272 SFLSASFDRFLKLWDTETGQVLSRFH-LDKVPTCVKFHPDNQNIFLVGGSDKKIRQWDIRSGKVVQEYDRHLGAILDITF  350 (503)
T ss_pred             eeeeeecceeeeeeccccceEEEEEe-cCCCceeeecCCCCCcEEEEecCCCcEEEEeccchHHHHHHHhhhhheeeeEE
Confidence                     99999999999998886 35678999999987 88999999999999999999999999999999999999


Q ss_pred             ccCCCEEEEEeCCCeEEEEeCCC---------------------------------------------------------
Q 042146          151 NRDGTMIVTSSYDGLYRILDAST---------------------------------------------------------  173 (262)
Q Consensus       151 ~~~~~~l~~~~~dg~i~~~d~~~---------------------------------------------------------  173 (262)
                      -++++.+++++.|+.+++|+.+.                                                         
T Consensus       351 ~~~g~rFissSDdks~riWe~~~~v~ik~i~~~~~hsmP~~~~~P~~~~~~aQs~dN~i~ifs~~~~~r~nkkK~feGh~  430 (503)
T KOG0282|consen  351 VDEGRRFISSSDDKSVRIWENRIPVPIKNIADPEMHTMPCLTLHPNGKWFAAQSMDNYIAIFSTVPPFRLNKKKRFEGHS  430 (503)
T ss_pred             ccCCceEeeeccCccEEEEEcCCCccchhhcchhhccCcceecCCCCCeehhhccCceEEEEecccccccCHhhhhccee
Confidence            99999999999999999999775                                                         


Q ss_pred             -----------CCccEEEEEcCCCeEEEEecCCCceeeEEeccCCceeEEEEEEecCCCeeEEccccceEEEEEcCCC-C
Q 042146          174 -----------PNGKFILVGTLDNTLRLWNYSTRKILKTYSGYTNSKYCISSTFSVTNGKYIVSHRDPVISVASHPAK-N  241 (262)
Q Consensus       174 -----------~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~-~  241 (262)
                                 |||.+|++|+.||.+.+||.++-+++..++.                      |.+++..+.|+|.. .
T Consensus       431 vaGys~~v~fSpDG~~l~SGdsdG~v~~wdwkt~kl~~~lka----------------------h~~~ci~v~wHP~e~S  488 (503)
T KOG0282|consen  431 VAGYSCQVDFSPDGRTLCSGDSDGKVNFWDWKTTKLVSKLKA----------------------HDQPCIGVDWHPVEPS  488 (503)
T ss_pred             ccCceeeEEEcCCCCeEEeecCCccEEEeechhhhhhhcccc----------------------CCcceEEEEecCCCcc
Confidence                       7888888888888888888888888888887                      88999999999974 5


Q ss_pred             eEEEeeecCCCcEEEEe
Q 042146          242 IIASGALDNDRTMKIWT  258 (262)
Q Consensus       242 ~l~~~~~d~d~~i~iw~  258 (262)
                      .+||++  -||.|++|+
T Consensus       489 kvat~~--w~G~Ikiwd  503 (503)
T KOG0282|consen  489 KVATCG--WDGLIKIWD  503 (503)
T ss_pred             eeEecc--cCceeEecC
Confidence            789999  679999996

>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=2.8e-35  Score=229.33  Aligned_cols=223  Identities=23%  Similarity=0.439  Sum_probs=192.7

Q ss_pred             ccceecccCcCceEEEEEccCCCeEEEecCCCeEEEeecCCCCCCCCC----CCCCCccccCCcccc---ccceeEEEEe
Q 042146           14 TLTQTLNGHLRAVSYVKFSHDGRLLTSSSAEKTLLTYSLSSISNFDST----PPSPLQKFTGHEQGI---SDLATIRLWD   86 (262)
Q Consensus        14 ~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~----~~~~~~~~~~~~~~v---~~~~~i~v~d   86 (262)
                      ...+++..|...|.++.|+|..++++++-..|.|.|||.++.......    .+.....+-+....+   .....|+||+
T Consensus         4 ~~krk~~~rSdRVKsVd~HPtePw~la~LynG~V~IWnyetqtmVksfeV~~~PvRa~kfiaRknWiv~GsDD~~IrVfn   83 (794)
T KOG0276|consen    4 DFKRKFQSRSDRVKSVDFHPTEPWILAALYNGDVQIWNYETQTMVKSFEVSEVPVRAAKFIARKNWIVTGSDDMQIRVFN   83 (794)
T ss_pred             hhhhHhhccCCceeeeecCCCCceEEEeeecCeeEEEecccceeeeeeeecccchhhheeeeccceEEEecCCceEEEEe
Confidence            345667779999999999999999999999999999998875433221    122222333333332   2233899999


Q ss_pred             cCCCccceecccCCcceEEEEEeCCCCEEEeecCCCeEEEEECCCC-eeeeeeecCCCCeeeEEEcc-CCCEEEEEeCCC
Q 042146           87 VPTATSLKTLIGHTNYVFCINFNPQSNRIVSDTFNETIRIWDIKTG-KCLKVLPAHSDPVTAIDFNR-DGTMIVTSSYDG  164 (262)
Q Consensus        87 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~-~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~dg  164 (262)
                      ..+++.++.+..|.+.|.+++.||..++++++|.|-+|++||.+.. .+.+++.+|+..|.+++|.| |.+.+++++.|+
T Consensus        84 ynt~ekV~~FeAH~DyIR~iavHPt~P~vLtsSDDm~iKlW~we~~wa~~qtfeGH~HyVMqv~fnPkD~ntFaS~sLDr  163 (794)
T KOG0276|consen   84 YNTGEKVKTFEAHSDYIRSIAVHPTLPYVLTSSDDMTIKLWDWENEWACEQTFEGHEHYVMQVAFNPKDPNTFASASLDR  163 (794)
T ss_pred             cccceeeEEeeccccceeeeeecCCCCeEEecCCccEEEEeeccCceeeeeEEcCcceEEEEEEecCCCccceeeeeccc
Confidence            9999999999999999999999999999999999999999999865 67889999999999999999 778999999999


Q ss_pred             eEEEEeCCC----------------------CCccEEEEEcCCCeEEEEecCCCceeeEEeccCCceeEEEEEEecCCCe
Q 042146          165 LYRILDAST----------------------PNGKFILVGTLDNTLRLWNYSTRKILKTYSGYTNSKYCISSTFSVTNGK  222 (262)
Q Consensus       165 ~i~~~d~~~----------------------~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  222 (262)
                      +|++|.+.+                      .+.++|++|+.|..|+|||..+..|++++.+                  
T Consensus       164 TVKVWslgs~~~nfTl~gHekGVN~Vdyy~~gdkpylIsgaDD~tiKvWDyQtk~CV~TLeG------------------  225 (794)
T KOG0276|consen  164 TVKVWSLGSPHPNFTLEGHEKGVNCVDYYTGGDKPYLISGADDLTIKVWDYQTKSCVQTLEG------------------  225 (794)
T ss_pred             cEEEEEcCCCCCceeeeccccCcceEEeccCCCcceEEecCCCceEEEeecchHHHHHHhhc------------------
Confidence            999999887                      5668999999999999999999999999998                  


Q ss_pred             eEEccccceEEEEEcCCCCeEEEeeecCCCcEEEEeec
Q 042146          223 YIVSHRDPVISVASHPAKNIIASGALDNDRTMKIWTQE  260 (262)
Q Consensus       223 ~~~~~~~~v~~~~~~p~~~~l~~~~~d~d~~i~iw~~~  260 (262)
                          |...|..+.|+|.-+++++||  +||++|||.-.
T Consensus       226 ----Ht~Nvs~v~fhp~lpiiisgs--EDGTvriWhs~  257 (794)
T KOG0276|consen  226 ----HTNNVSFVFFHPELPIIISGS--EDGTVRIWNSK  257 (794)
T ss_pred             ----ccccceEEEecCCCcEEEEec--CCccEEEecCc
Confidence                888999999999999999999  99999999754

>KOG0293 consensus WD40 repeat-containing protein [Function unknown]

Probab=100.00  E-value=1.7e-35  Score=220.19  Aligned_cols=193  Identities=31%  Similarity=0.535  Sum_probs=167.5

Q ss_pred             ccccceecccCcCceEEEEEccCCCeEEEecCCCeEEEeecCCCCCCCCCCCCCCccccCCccccccceeEEEEecCCCc
Q 042146           12 PYTLTQTLNGHLRAVSYVKFSHDGRLLTSSSAEKTLLTYSLSSISNFDSTPPSPLQKFTGHEQGISDLATIRLWDVPTAT   91 (262)
Q Consensus        12 ~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~i~v~d~~~~~   91 (262)
                      |.+..+.+..|+.+|.-+.||++|+|||+++.|.+..+|++                               +.|.+ -+
T Consensus       213 p~qt~qil~~htdEVWfl~FS~nGkyLAsaSkD~Taiiw~v-------------------------------~~d~~-~k  260 (519)
T KOG0293|consen  213 PSQTWQILQDHTDEVWFLQFSHNGKYLASASKDSTAIIWIV-------------------------------VYDVH-FK  260 (519)
T ss_pred             CchhhhhHhhCCCcEEEEEEcCCCeeEeeccCCceEEEEEE-------------------------------ecCcc-ee
Confidence            56677889999999999999999999999999999999954                               33433 45


Q ss_pred             cceecccCCcceEEEEEeCCCCEEEeecCCCeEEEEECCCCeeeeeeec-CCCCeeeEEEccCCCEEEEEeCCCeEEEEe
Q 042146           92 SLKTLIGHTNYVFCINFNPQSNRIVSDTFNETIRIWDIKTGKCLKVLPA-HSDPVTAIDFNRDGTMIVTSSYDGLYRILD  170 (262)
Q Consensus        92 ~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~~~dg~i~~~d  170 (262)
                      ..+++.+|..+|..+.|+||.+++++++.+..+.+||+.++.+.+.+.. +...+.+++|.|||..+++|+.|+.+..||
T Consensus       261 l~~tlvgh~~~V~yi~wSPDdryLlaCg~~e~~~lwDv~tgd~~~~y~~~~~~S~~sc~W~pDg~~~V~Gs~dr~i~~wd  340 (519)
T KOG0293|consen  261 LKKTLVGHSQPVSYIMWSPDDRYLLACGFDEVLSLWDVDTGDLRHLYPSGLGFSVSSCAWCPDGFRFVTGSPDRTIIMWD  340 (519)
T ss_pred             eeeeeecccCceEEEEECCCCCeEEecCchHheeeccCCcchhhhhcccCcCCCcceeEEccCCceeEecCCCCcEEEec
Confidence            6678899999999999999999999999999999999999998877743 357899999999999999999999999999


Q ss_pred             CCC-----------------------------------------------------------------------------
Q 042146          171 AST-----------------------------------------------------------------------------  173 (262)
Q Consensus       171 ~~~-----------------------------------------------------------------------------  173 (262)
                      +..                                                                             
T Consensus       341 lDgn~~~~W~gvr~~~v~dlait~Dgk~vl~v~~d~~i~l~~~e~~~dr~lise~~~its~~iS~d~k~~LvnL~~qei~  420 (519)
T KOG0293|consen  341 LDGNILGNWEGVRDPKVHDLAITYDGKYVLLVTVDKKIRLYNREARVDRGLISEEQPITSFSISKDGKLALVNLQDQEIH  420 (519)
T ss_pred             CCcchhhcccccccceeEEEEEcCCCcEEEEEecccceeeechhhhhhhccccccCceeEEEEcCCCcEEEEEcccCeeE
Confidence            775                                                                             


Q ss_pred             -----------------------------CCccEEEEEcCCCeEEEEecCCCceeeEEeccCCceeEEEEEEecCCCeeE
Q 042146          174 -----------------------------PNGKFILVGTLDNTLRLWNYSTRKILKTYSGYTNSKYCISSTFSVTNGKYI  224 (262)
Q Consensus       174 -----------------------------~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  224 (262)
                                                   .+..++++|++|+.|+||+..+|+++..+.+                    
T Consensus       421 LWDl~e~~lv~kY~Ghkq~~fiIrSCFgg~~~~fiaSGSED~kvyIWhr~sgkll~~LsG--------------------  480 (519)
T KOG0293|consen  421 LWDLEENKLVRKYFGHKQGHFIIRSCFGGGNDKFIASGSEDSKVYIWHRISGKLLAVLSG--------------------  480 (519)
T ss_pred             EeecchhhHHHHhhcccccceEEEeccCCCCcceEEecCCCceEEEEEccCCceeEeecC--------------------
Confidence                                         3556778888888888888888888888777                    


Q ss_pred             EccccceEEEEEcCCC-CeEEEeeecCCCcEEEEeec
Q 042146          225 VSHRDPVISVASHPAK-NIIASGALDNDRTMKIWTQE  260 (262)
Q Consensus       225 ~~~~~~v~~~~~~p~~-~~l~~~~~d~d~~i~iw~~~  260 (262)
                        |...|++++|+|.. .++|++|  +||+||||.+.
T Consensus       481 --Hs~~vNcVswNP~~p~m~ASas--DDgtIRIWg~~  513 (519)
T KOG0293|consen  481 --HSKTVNCVSWNPADPEMFASAS--DDGTIRIWGPS  513 (519)
T ss_pred             --CcceeeEEecCCCCHHHhhccC--CCCeEEEecCC
Confidence              89999999999965 4788888  89999999876

>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=100.00  E-value=2.1e-34  Score=199.96  Aligned_cols=218  Identities=27%  Similarity=0.473  Sum_probs=188.3

Q ss_pred             ccccceecccCcCceEEEEEccCCCeEEEecCCCeEEEeecCCCCCCCCCCCCCCccccCCccccccce-----------
Q 042146           12 PYTLTQTLNGHLRAVSYVKFSHDGRLLTSSSAEKTLLTYSLSSISNFDSTPPSPLQKFTGHEQGISDLA-----------   80 (262)
Q Consensus        12 ~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~-----------   80 (262)
                      |.+..+.+..|+++|+++.|+-+|+|.++++.|++|++|+.        .....+..+.+|...+...+           
T Consensus         6 ptkr~~~l~~~qgaV~avryN~dGnY~ltcGsdrtvrLWNp--------~rg~liktYsghG~EVlD~~~s~Dnskf~s~   77 (307)
T KOG0316|consen    6 PTKRLSILDCAQGAVRAVRYNVDGNYCLTCGSDRTVRLWNP--------LRGALIKTYSGHGHEVLDAALSSDNSKFASC   77 (307)
T ss_pred             cchhceeecccccceEEEEEccCCCEEEEcCCCceEEeecc--------cccceeeeecCCCceeeeccccccccccccC
Confidence            34456778899999999999999999999999999999954        44455556666655543333           


Q ss_pred             ----eEEEEecCCCccceecccCCcceEEEEEeCCCCEEEeecCCCeEEEEECCCC--eeeeeeecCCCCeeeEEEccCC
Q 042146           81 ----TIRLWDVPTATSLKTLIGHTNYVFCINFNPQSNRIVSDTFNETIRIWDIKTG--KCLKVLPAHSDPVTAIDFNRDG  154 (262)
Q Consensus        81 ----~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~--~~~~~~~~~~~~v~~~~~~~~~  154 (262)
                          .+.+||+++|+..+.+.+|.+.|+.++|+.+...+++|+.|.++++||.++.  ++++.+......|.++...  +
T Consensus        78 GgDk~v~vwDV~TGkv~Rr~rgH~aqVNtV~fNeesSVv~SgsfD~s~r~wDCRS~s~ePiQildea~D~V~Si~v~--~  155 (307)
T KOG0316|consen   78 GGDKAVQVWDVNTGKVDRRFRGHLAQVNTVRFNEESSVVASGSFDSSVRLWDCRSRSFEPIQILDEAKDGVSSIDVA--E  155 (307)
T ss_pred             CCCceEEEEEcccCeeeeecccccceeeEEEecCcceEEEeccccceeEEEEcccCCCCccchhhhhcCceeEEEec--c
Confidence                8999999999999999999999999999999999999999999999999864  6788888788899999886  5


Q ss_pred             CEEEEEeCCCeEEEEeCCC------------------CCccEEEEEcCCCeEEEEecCCCceeeEEeccCCceeEEEEEE
Q 042146          155 TMIVTSSYDGLYRILDAST------------------PNGKFILVGTLDNTLRLWNYSTRKILKTYSGYTNSKYCISSTF  216 (262)
Q Consensus       155 ~~l~~~~~dg~i~~~d~~~------------------~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~  216 (262)
                      ..+++|+.||+++.||+|.                  +++++.++++.|+++++.|-.+|++++.+++|.+..       
T Consensus       156 heIvaGS~DGtvRtydiR~G~l~sDy~g~pit~vs~s~d~nc~La~~l~stlrLlDk~tGklL~sYkGhkn~e-------  228 (307)
T KOG0316|consen  156 HEIVAGSVDGTVRTYDIRKGTLSSDYFGHPITSVSFSKDGNCSLASSLDSTLRLLDKETGKLLKSYKGHKNME-------  228 (307)
T ss_pred             cEEEeeccCCcEEEEEeecceeehhhcCCcceeEEecCCCCEEEEeeccceeeecccchhHHHHHhcccccce-------
Confidence            6899999999999999987                  799999999999999999999999999999976432       


Q ss_pred             ecCCCeeEEccccceEEEEEcCCCCeEEEeeecCCCcEEEEeecc
Q 042146          217 SVTNGKYIVSHRDPVISVASHPAKNIIASGALDNDRTMKIWTQEK  261 (262)
Q Consensus       217 ~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~d~d~~i~iw~~~~  261 (262)
                                   .-..++++.....+++|+  +||.|++||+.+
T Consensus       229 -------------ykldc~l~qsdthV~sgS--EDG~Vy~wdLvd  258 (307)
T KOG0316|consen  229 -------------YKLDCCLNQSDTHVFSGS--EDGKVYFWDLVD  258 (307)
T ss_pred             -------------eeeeeeecccceeEEecc--CCceEEEEEecc
Confidence                         234667777888999999  999999999864

>KOG0283 consensus WD40 repeat-containing protein [Function unknown]

Probab=100.00  E-value=1.9e-34  Score=231.34  Aligned_cols=225  Identities=26%  Similarity=0.507  Sum_probs=184.1

Q ss_pred             ccccceecc-cCcCceEEEEEccCCCeEEEecCCCeEEEeecCCCCC---------------------------C-----
Q 042146           12 PYTLTQTLN-GHLRAVSYVKFSHDGRLLTSSSAEKTLLTYSLSSISN---------------------------F-----   58 (262)
Q Consensus        12 ~~~~~~~~~-~h~~~v~~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~---------------------------~-----   58 (262)
                      .....+.+. +|.+.|.+|.||+||+|||+||.|+.|+||.+.+...                           .     
T Consensus       255 al~~~Qe~~~ah~gaIw~mKFS~DGKyLAsaGeD~virVWkVie~e~~~~~~~~~~~~~~~~~~~s~~~p~~s~~~~~~~  334 (712)
T KOG0283|consen  255 ALTVVQEISNAHKGAIWAMKFSHDGKYLASAGEDGVIRVWKVIESERMRVAEGDSSCMYFEYNANSQIEPSTSSEEKISS  334 (712)
T ss_pred             eeEEeeccccccCCcEEEEEeCCCCceeeecCCCceEEEEEEeccchhcccccccchhhhhhhhccccCccccccccccc
Confidence            334556667 8999999999999999999999999999999765000                           0     


Q ss_pred             --------------------CCCCCCCCccccCCccccccce--------------eEEEEecCCCccceecccCCcceE
Q 042146           59 --------------------DSTPPSPLQKFTGHEQGISDLA--------------TIRLWDVPTATSLKTLIGHTNYVF  104 (262)
Q Consensus        59 --------------------~~~~~~~~~~~~~~~~~v~~~~--------------~i~v~d~~~~~~~~~~~~~~~~v~  104 (262)
                                          ......+...+.+|...|..+.              +|++|++...++++.+. |...|+
T Consensus       335 ~~s~~~~~~~s~~~~~p~~~f~f~ekP~~ef~GHt~DILDlSWSKn~fLLSSSMDKTVRLWh~~~~~CL~~F~-HndfVT  413 (712)
T KOG0283|consen  335 RTSSSRKGSQSPCVLLPLKAFVFSEKPFCEFKGHTADILDLSWSKNNFLLSSSMDKTVRLWHPGRKECLKVFS-HNDFVT  413 (712)
T ss_pred             cccccccccCCccccCCCccccccccchhhhhccchhheecccccCCeeEeccccccEEeecCCCcceeeEEe-cCCeeE
Confidence                                0011234445566766665555              99999999999998886 999999


Q ss_pred             EEEEeC-CCCEEEeecCCCeEEEEECCCCeeeeeeecCCCCeeeEEEccCCCEEEEEeCCCeEEEEeCCC----------
Q 042146          105 CINFNP-QSNRIVSDTFNETIRIWDIKTGKCLKVLPAHSDPVTAIDFNRDGTMIVTSSYDGLYRILDAST----------  173 (262)
Q Consensus       105 ~~~~~~-~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~d~~~----------  173 (262)
                      |++|+| |.+++++|+-||.|+||++...+.+.-.. -..-|++++|.|+|+..++|+.+|.+++|++..          
T Consensus       414 cVaFnPvDDryFiSGSLD~KvRiWsI~d~~Vv~W~D-l~~lITAvcy~PdGk~avIGt~~G~C~fY~t~~lk~~~~~~I~  492 (712)
T KOG0283|consen  414 CVAFNPVDDRYFISGSLDGKVRLWSISDKKVVDWND-LRDLITAVCYSPDGKGAVIGTFNGYCRFYDTEGLKLVSDFHIR  492 (712)
T ss_pred             EEEecccCCCcEeecccccceEEeecCcCeeEeehh-hhhhheeEEeccCCceEEEEEeccEEEEEEccCCeEEEeeeEe
Confidence            999999 99999999999999999998777655444 458899999999999999999999999999876          


Q ss_pred             -------------------CCccEEEEEcCCCeEEEEecCCCceeeEEeccCCceeEEEEEEecCCCeeEEccccceEEE
Q 042146          174 -------------------PNGKFILVGTLDNTLRLWNYSTRKILKTYSGYTNSKYCISSTFSVTNGKYIVSHRDPVISV  234 (262)
Q Consensus       174 -------------------~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~  234 (262)
                                         .+...+++.+.|..|+|||.++..++..|+++.+.                    ..=...
T Consensus       493 ~~~~Kk~~~~rITG~Q~~p~~~~~vLVTSnDSrIRI~d~~~~~lv~KfKG~~n~--------------------~SQ~~A  552 (712)
T KOG0283|consen  493 LHNKKKKQGKRITGLQFFPGDPDEVLVTSNDSRIRIYDGRDKDLVHKFKGFRNT--------------------SSQISA  552 (712)
T ss_pred             eccCccccCceeeeeEecCCCCCeEEEecCCCceEEEeccchhhhhhhcccccC--------------------Ccceee
Confidence                               22335888889999999999999999999986532                    223466


Q ss_pred             EEcCCCCeEEEeeecCCCcEEEEeec
Q 042146          235 ASHPAKNIIASGALDNDRTMKIWTQE  260 (262)
Q Consensus       235 ~~~p~~~~l~~~~~d~d~~i~iw~~~  260 (262)
                      .|+.||++|++++  +|..|+||+++
T Consensus       553 sfs~Dgk~IVs~s--eDs~VYiW~~~  576 (712)
T KOG0283|consen  553 SFSSDGKHIVSAS--EDSWVYIWKND  576 (712)
T ss_pred             eEccCCCEEEEee--cCceEEEEeCC
Confidence            7899999999999  89999999974

>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=100.00  E-value=3.3e-34  Score=227.56  Aligned_cols=240  Identities=19%  Similarity=0.421  Sum_probs=196.7

Q ss_pred             eeeecccccceecccCcCceEEEEEccCCCeEEEecCCCeEEEeecCCCCCCCCCCCCCCccccCCccccccce------
Q 042146            7 LESFRPYTLTQTLNGHLRAVSYVKFSHDGRLLTSSSAEKTLLTYSLSSISNFDSTPPSPLQKFTGHEQGISDLA------   80 (262)
Q Consensus         7 i~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~------   80 (262)
                      +|.|+....+...++|...++|++++|||.++|||+.||.|+|||...        +-+...+..|..+++.+.      
T Consensus       334 VweWqsEsYVlKQQgH~~~i~~l~YSpDgq~iaTG~eDgKVKvWn~~S--------gfC~vTFteHts~Vt~v~f~~~g~  405 (893)
T KOG0291|consen  334 VWEWQSESYVLKQQGHSDRITSLAYSPDGQLIATGAEDGKVKVWNTQS--------GFCFVTFTEHTSGVTAVQFTARGN  405 (893)
T ss_pred             EEEeeccceeeeccccccceeeEEECCCCcEEEeccCCCcEEEEeccC--------ceEEEEeccCCCceEEEEEEecCC
Confidence            567777788888899999999999999999999999999999997654        344455566666554443      


Q ss_pred             ---------eEEEEecCCCccceecccCC-cceEEEEEeCCCCEEEeecCCC-eEEEEECCCCeeeeeeecCCCCeeeEE
Q 042146           81 ---------TIRLWDVPTATSLKTLIGHT-NYVFCINFNPQSNRIVSDTFNE-TIRIWDIKTGKCLKVLPAHSDPVTAID  149 (262)
Q Consensus        81 ---------~i~v~d~~~~~~~~~~~~~~-~~v~~~~~~~~~~~l~~~~~dg-~i~vwd~~~~~~~~~~~~~~~~v~~~~  149 (262)
                               +|+.||+...+..+++.... ....|++..|.|.++++|+.|. .|.+|++++|+.+..+.+|++||.+++
T Consensus       406 ~llssSLDGtVRAwDlkRYrNfRTft~P~p~QfscvavD~sGelV~AG~~d~F~IfvWS~qTGqllDiLsGHEgPVs~l~  485 (893)
T KOG0291|consen  406 VLLSSSLDGTVRAWDLKRYRNFRTFTSPEPIQFSCVAVDPSGELVCAGAQDSFEIFVWSVQTGQLLDILSGHEGPVSGLS  485 (893)
T ss_pred             EEEEeecCCeEEeeeecccceeeeecCCCceeeeEEEEcCCCCEEEeeccceEEEEEEEeecCeeeehhcCCCCcceeeE
Confidence                     99999999998888876543 4678999999999999999887 699999999999999999999999999


Q ss_pred             EccCCCEEEEEeCCCeEEEEeCCC--------------------CCccEEEEEcCCCeEEEEecCCCceeeEEeccCCce
Q 042146          150 FNRDGTMIVTSSYDGLYRILDAST--------------------PNGKFILVGTLDNTLRLWNYSTRKILKTYSGYTNSK  209 (262)
Q Consensus       150 ~~~~~~~l~~~~~dg~i~~~d~~~--------------------~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~  209 (262)
                      |+|++..|++++.|.+|++||+-.                    |+|+.|++++.||.|.+||...+..+..+.+-....
T Consensus       486 f~~~~~~LaS~SWDkTVRiW~if~s~~~vEtl~i~sdvl~vsfrPdG~elaVaTldgqItf~d~~~~~q~~~IdgrkD~~  565 (893)
T KOG0291|consen  486 FSPDGSLLASGSWDKTVRIWDIFSSSGTVETLEIRSDVLAVSFRPDGKELAVATLDGQITFFDIKEAVQVGSIDGRKDLS  565 (893)
T ss_pred             EccccCeEEeccccceEEEEEeeccCceeeeEeeccceeEEEEcCCCCeEEEEEecceEEEEEhhhceeeccccchhhcc
Confidence            999999999999999999999765                    999999999999999999999877776655422111


Q ss_pred             eEEEEEEecCCCeeEE---ccccceEEEEEcCCCCeEEEeeecCCCcEEEEeecc
Q 042146          210 YCISSTFSVTNGKYIV---SHRDPVISVASHPAKNIIASGALDNDRTMKIWTQEK  261 (262)
Q Consensus       210 ~~~~~~~~~~~~~~~~---~~~~~v~~~~~~p~~~~l~~~~~d~d~~i~iw~~~~  261 (262)
                      ....     ......+   +.....+.+++++||..+++||  ....|.+|++.+
T Consensus       566 ~gR~-----~~D~~ta~~sa~~K~Ftti~ySaDG~~IlAgG--~sn~iCiY~v~~  613 (893)
T KOG0291|consen  566 GGRK-----ETDRITAENSAKGKTFTTICYSADGKCILAGG--ESNSICIYDVPE  613 (893)
T ss_pred             cccc-----ccceeehhhcccCCceEEEEEcCCCCEEEecC--CcccEEEEECch
Confidence            0000     0000000   1457899999999999999999  889999999865

>KOG0295 consensus WD40 repeat-containing protein [Function unknown]

Probab=100.00  E-value=8.8e-35  Score=212.99  Aligned_cols=227  Identities=30%  Similarity=0.542  Sum_probs=198.9

Q ss_pred             CCCCceeeec--ccccceecccCcCceEEEEEccCCCeEEEecCCCeEEEeecCCCCCCCCCCCCCCccccCCcccc---
Q 042146            2 SSDRSLESFR--PYTLTQTLNGHLRAVSYVKFSHDGRLLTSSSAEKTLLTYSLSSISNFDSTPPSPLQKFTGHEQGI---   76 (262)
Q Consensus         2 s~d~~i~~~~--~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v---   76 (262)
                      |.|.+|+.|+  ++++...+++|+..|..++|+..|++||+++.|=.+++||.+...       ..+..+.+|...+   
T Consensus       127 s~d~tikv~D~~tg~~e~~LrGHt~sv~di~~~a~Gk~l~tcSsDl~~~LWd~~~~~-------~c~ks~~gh~h~vS~V  199 (406)
T KOG0295|consen  127 SEDATIKVFDTETGELERSLRGHTDSVFDISFDASGKYLATCSSDLSAKLWDFDTFF-------RCIKSLIGHEHGVSSV  199 (406)
T ss_pred             cCCceEEEEEccchhhhhhhhccccceeEEEEecCccEEEecCCccchhheeHHHHH-------HHHHHhcCcccceeeE
Confidence            3588988886  677899999999999999999999999999999999999987521       1111122222222   


Q ss_pred             ------------ccceeEEEEecCCCccceecccCCcceEEEEEeCCCCEEEeecCCCeEEEEECCCCeeeeeeecCCCC
Q 042146           77 ------------SDLATIRLWDVPTATSLKTLIGHTNYVFCINFNPQSNRIVSDTFNETIRIWDIKTGKCLKVLPAHSDP  144 (262)
Q Consensus        77 ------------~~~~~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~  144 (262)
                                  ....+|+.|++.++-++.++.+|...|..++.+.||.++++++.|.+|++|-+.++++...++.|..+
T Consensus       200 ~f~P~gd~ilS~srD~tik~We~~tg~cv~t~~~h~ewvr~v~v~~DGti~As~s~dqtl~vW~~~t~~~k~~lR~hEh~  279 (406)
T KOG0295|consen  200 FFLPLGDHILSCSRDNTIKAWECDTGYCVKTFPGHSEWVRMVRVNQDGTIIASCSNDQTLRVWVVATKQCKAELREHEHP  279 (406)
T ss_pred             EEEecCCeeeecccccceeEEecccceeEEeccCchHhEEEEEecCCeeEEEecCCCceEEEEEeccchhhhhhhccccc
Confidence                        22238999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             eeeEEEccC----------C-----CEEEEEeCCCeEEEEeCCC--------------------CCccEEEEEcCCCeEE
Q 042146          145 VTAIDFNRD----------G-----TMIVTSSYDGLYRILDAST--------------------PNGKFILVGTLDNTLR  189 (262)
Q Consensus       145 v~~~~~~~~----------~-----~~l~~~~~dg~i~~~d~~~--------------------~~~~~l~~~~~dg~i~  189 (262)
                      |.+++|.|.          +     .++++++.|++|++||+..                    |.|+||+++.+|++++
T Consensus       280 vEci~wap~~~~~~i~~at~~~~~~~~l~s~SrDktIk~wdv~tg~cL~tL~ghdnwVr~~af~p~Gkyi~ScaDDktlr  359 (406)
T KOG0295|consen  280 VECIAWAPESSYPSISEATGSTNGGQVLGSGSRDKTIKIWDVSTGMCLFTLVGHDNWVRGVAFSPGGKYILSCADDKTLR  359 (406)
T ss_pred             eEEEEecccccCcchhhccCCCCCccEEEeecccceEEEEeccCCeEEEEEecccceeeeeEEcCCCeEEEEEecCCcEE
Confidence            999999763          2     4899999999999999987                    8899999999999999


Q ss_pred             EEecCCCceeeEEeccCCceeEEEEEEecCCCeeEEccccceEEEEEcCCCCeEEEeeecCCCcEEEEee
Q 042146          190 LWNYSTRKILKTYSGYTNSKYCISSTFSVTNGKYIVSHRDPVISVASHPAKNIIASGALDNDRTMKIWTQ  259 (262)
Q Consensus       190 i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~d~d~~i~iw~~  259 (262)
                      +||++++++...+..                      |..-|+++.|+.+..+++||+  -|.++++|..
T Consensus       360 vwdl~~~~cmk~~~a----------------------h~hfvt~lDfh~~~p~VvTGs--Vdqt~KvwEc  405 (406)
T KOG0295|consen  360 VWDLKNLQCMKTLEA----------------------HEHFVTSLDFHKTAPYVVTGS--VDQTVKVWEC  405 (406)
T ss_pred             EEEeccceeeeccCC----------------------CcceeEEEecCCCCceEEecc--ccceeeeeec
Confidence            999999999999987                      888899999999999999999  8899999974

>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]

Probab=100.00  E-value=9.1e-34  Score=214.00  Aligned_cols=234  Identities=21%  Similarity=0.382  Sum_probs=199.1

Q ss_pred             CCCCceeeec-ccccceecccCcCceEEEEEccCCCeEEEecCCCeEEEeecCCCCCCCCCC---CC-CCccccCCcccc
Q 042146            2 SSDRSLESFR-PYTLTQTLNGHLRAVSYVKFSHDGRLLTSSSAEKTLLTYSLSSISNFDSTP---PS-PLQKFTGHEQGI   76 (262)
Q Consensus         2 s~d~~i~~~~-~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~---~~-~~~~~~~~~~~v   76 (262)
                      +.||.++.|. +..++.+|..|.+||.++.|+.+|+||++++.||++.+||..........+   .. .-..+......+
T Consensus       254 ~~~G~~riw~~~G~l~~tl~~HkgPI~slKWnk~G~yilS~~vD~ttilwd~~~g~~~q~f~~~s~~~lDVdW~~~~~F~  333 (524)
T KOG0273|consen  254 SEDGEARIWNKDGNLISTLGQHKGPIFSLKWNKKGTYILSGGVDGTTILWDAHTGTVKQQFEFHSAPALDVDWQSNDEFA  333 (524)
T ss_pred             ecCcEEEEEecCchhhhhhhccCCceEEEEEcCCCCEEEeccCCccEEEEeccCceEEEeeeeccCCccceEEecCceEe
Confidence            4688899996 678999999999999999999999999999999999999975432211111   11 112222332222


Q ss_pred             cc--ceeEEEEecCCCccceecccCCcceEEEEEeCCCCEEEeecCCCeEEEEECCCCeeeeeeecCCCCeeeEEEccCC
Q 042146           77 SD--LATIRLWDVPTATSLKTLIGHTNYVFCINFNPQSNRIVSDTFNETIRIWDIKTGKCLKVLPAHSDPVTAIDFNRDG  154 (262)
Q Consensus        77 ~~--~~~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~  154 (262)
                      .+  .+.|+|+.+....++.++.+|.++|.+|.|+|.+.+|++++.|++++||........+.+.+|+..|..+.|+|.|
T Consensus       334 ts~td~~i~V~kv~~~~P~~t~~GH~g~V~alk~n~tg~LLaS~SdD~TlkiWs~~~~~~~~~l~~Hskei~t~~wsp~g  413 (524)
T KOG0273|consen  334 TSSTDGCIHVCKVGEDRPVKTFIGHHGEVNALKWNPTGSLLASCSDDGTLKIWSMGQSNSVHDLQAHSKEIYTIKWSPTG  413 (524)
T ss_pred             ecCCCceEEEEEecCCCcceeeecccCceEEEEECCCCceEEEecCCCeeEeeecCCCcchhhhhhhccceeeEeecCCC
Confidence            22  2269999999999999999999999999999999999999999999999998888899999999999999999853


Q ss_pred             ---------CEEEEEeCCCeEEEEeCCC--------------------CCccEEEEEcCCCeEEEEecCCCceeeEEecc
Q 042146          155 ---------TMIVTSSYDGLYRILDAST--------------------PNGKFILVGTLDNTLRLWNYSTRKILKTYSGY  205 (262)
Q Consensus       155 ---------~~l~~~~~dg~i~~~d~~~--------------------~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~  205 (262)
                               ..+++++.|++|++||+..                    |+++++++|+.||.|.+|+.++++..+.+.  
T Consensus       414 ~v~~n~~~~~~l~sas~dstV~lwdv~~gv~i~~f~kH~~pVysvafS~~g~ylAsGs~dg~V~iws~~~~~l~~s~~--  491 (524)
T KOG0273|consen  414 PVTSNPNMNLMLASASFDSTVKLWDVESGVPIHTLMKHQEPVYSVAFSPNGRYLASGSLDGCVHIWSTKTGKLVKSYQ--  491 (524)
T ss_pred             CccCCCcCCceEEEeecCCeEEEEEccCCceeEeeccCCCceEEEEecCCCcEEEecCCCCeeEeccccchheeEeec--
Confidence                     4799999999999999877                    899999999999999999999999999988  


Q ss_pred             CCceeEEEEEEecCCCeeEEccccceEEEEEcCCCCeEEEeeecCCCcEEEEeec
Q 042146          206 TNSKYCISSTFSVTNGKYIVSHRDPVISVASHPAKNIIASGALDNDRTMKIWTQE  260 (262)
Q Consensus       206 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~d~d~~i~iw~~~  260 (262)
                                           ..+.|..++|+.+|..|..+-  .|+.+.+-|+.
T Consensus       492 ---------------------~~~~Ifel~Wn~~G~kl~~~~--sd~~vcvldlr  523 (524)
T KOG0273|consen  492 ---------------------GTGGIFELCWNAAGDKLGACA--SDGSVCVLDLR  523 (524)
T ss_pred             ---------------------CCCeEEEEEEcCCCCEEEEEe--cCCCceEEEec
Confidence                                 455699999999999999888  89999998875

>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=100.00  E-value=2.1e-34  Score=227.96  Aligned_cols=227  Identities=26%  Similarity=0.500  Sum_probs=193.4

Q ss_pred             Cceeeec-ccccceecccCcCceEEEEEccCCCeEEEecCCCeEEEeecCCCCCCCCCCCCCCccccCCccccccce---
Q 042146            5 RSLESFR-PYTLTQTLNGHLRAVSYVKFSHDGRLLTSSSAEKTLLTYSLSSISNFDSTPPSPLQKFTGHEQGISDLA---   80 (262)
Q Consensus         5 ~~i~~~~-~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~---   80 (262)
                      +.++.|. +....+.+.||+..|.+++...+|.+|+||+.|+++++|.+++    ......+.....+|...+..++   
T Consensus       346 ~~lr~y~~~~~~c~ii~GH~e~vlSL~~~~~g~llat~sKD~svilWr~~~----~~~~~~~~a~~~gH~~svgava~~~  421 (775)
T KOG0319|consen  346 PELRLYTLPTSYCQIIPGHTEAVLSLDVWSSGDLLATGSKDKSVILWRLNN----NCSKSLCVAQANGHTNSVGAVAGSK  421 (775)
T ss_pred             CceEEEecCCCceEEEeCchhheeeeeecccCcEEEEecCCceEEEEEecC----Ccchhhhhhhhcccccccceeeecc
Confidence            4455553 2334558899999999999777889999999999999998854    2233334445555665554444   


Q ss_pred             -------------eEEEEecCCCccc---------eecccCCcceEEEEEeCCCCEEEeecCCCeEEEEECCCCeeeeee
Q 042146           81 -------------TIRLWDVPTATSL---------KTLIGHTNYVFCINFNPQSNRIVSDTFNETIRIWDIKTGKCLKVL  138 (262)
Q Consensus        81 -------------~i~v~d~~~~~~~---------~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~  138 (262)
                                   ++++|++...+..         .....|...|+|++++|+.+++++||.|.+.++|+++.......+
T Consensus       422 ~~asffvsvS~D~tlK~W~l~~s~~~~~~~~~~~~~t~~aHdKdIN~Vaia~ndkLiAT~SqDktaKiW~le~~~l~~vL  501 (775)
T KOG0319|consen  422 LGASFFVSVSQDCTLKLWDLPKSKETAFPIVLTCRYTERAHDKDINCVAIAPNDKLIATGSQDKTAKIWDLEQLRLLGVL  501 (775)
T ss_pred             cCccEEEEecCCceEEEecCCCcccccccceehhhHHHHhhcccccceEecCCCceEEecccccceeeecccCceEEEEe
Confidence                         9999999762211         133579999999999999999999999999999999999999999


Q ss_pred             ecCCCCeeeEEEccCCCEEEEEeCCCeEEEEeCCC--------------------CCccEEEEEcCCCeEEEEecCCCce
Q 042146          139 PAHSDPVTAIDFNRDGTMIVTSSYDGLYRILDAST--------------------PNGKFILVGTLDNTLRLWNYSTRKI  198 (262)
Q Consensus       139 ~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~d~~~--------------------~~~~~l~~~~~dg~i~i~d~~~~~~  198 (262)
                      .+|+..|.++.|+|..+.++++|.|++|++|.+.+                    .++..|++++.||.|++|++.++++
T Consensus       502 sGH~RGvw~V~Fs~~dq~laT~SgD~TvKIW~is~fSClkT~eGH~~aVlra~F~~~~~qliS~~adGliKlWnikt~eC  581 (775)
T KOG0319|consen  502 SGHTRGVWCVSFSKNDQLLATCSGDKTVKIWSISTFSCLKTFEGHTSAVLRASFIRNGKQLISAGADGLIKLWNIKTNEC  581 (775)
T ss_pred             eCCccceEEEEeccccceeEeccCCceEEEEEeccceeeeeecCccceeEeeeeeeCCcEEEeccCCCcEEEEeccchhh
Confidence            99999999999999999999999999999999887                    6889999999999999999999999


Q ss_pred             eeEEeccCCceeEEEEEEecCCCeeEEccccceEEEEEcCCCCeEEEeeecCCCcEEEEee
Q 042146          199 LKTYSGYTNSKYCISSTFSVTNGKYIVSHRDPVISVASHPAKNIIASGALDNDRTMKIWTQ  259 (262)
Q Consensus       199 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~d~d~~i~iw~~  259 (262)
                      +.++..                      |.++|.+++.+|...+++||+  .||.|.+|.=
T Consensus       582 ~~tlD~----------------------H~DrvWaL~~~~~~~~~~tgg--~Dg~i~~wkD  618 (775)
T KOG0319|consen  582 EMTLDA----------------------HNDRVWALSVSPLLDMFVTGG--GDGRIIFWKD  618 (775)
T ss_pred             hhhhhh----------------------ccceeEEEeecCccceeEecC--CCeEEEEeec
Confidence            999998                      999999999999999999999  8999999974

>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]

Probab=100.00  E-value=7.2e-34  Score=229.27  Aligned_cols=231  Identities=34%  Similarity=0.664  Sum_probs=198.7

Q ss_pred             CCCCceeeecc--cc--cceecccCcCceEEEEEccCCCeEEEecCCCeEEEeecCCCCCCCCCCCCCCccccCCccccc
Q 042146            2 SSDRSLESFRP--YT--LTQTLNGHLRAVSYVKFSHDGRLLTSSSAEKTLLTYSLSSISNFDSTPPSPLQKFTGHEQGIS   77 (262)
Q Consensus         2 s~d~~i~~~~~--~~--~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~   77 (262)
                      +.|+.+..|..  .+  +.+.+.+|...|++++|+|+++++++++.|++|+|||+..       .......+.+|...+.
T Consensus       178 ~~~~~i~~~~~~~~~~~~~~~l~~h~~~v~~~~fs~d~~~l~s~s~D~tiriwd~~~-------~~~~~~~l~gH~~~v~  250 (456)
T KOG0266|consen  178 SSDGLIRIWKLEGIKSNLLRELSGHTRGVSDVAFSPDGSYLLSGSDDKTLRIWDLKD-------DGRNLKTLKGHSTYVT  250 (456)
T ss_pred             cCCCcEEEeecccccchhhccccccccceeeeEECCCCcEEEEecCCceEEEeeccC-------CCeEEEEecCCCCceE
Confidence            35667776653  34  6677789999999999999999999999999999998732       1233344445555444


Q ss_pred             cce---------------eEEEEecCCCccceecccCCcceEEEEEeCCCCEEEeecCCCeEEEEECCCCe--eeeeeec
Q 042146           78 DLA---------------TIRLWDVPTATSLKTLIGHTNYVFCINFNPQSNRIVSDTFNETIRIWDIKTGK--CLKVLPA  140 (262)
Q Consensus        78 ~~~---------------~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~--~~~~~~~  140 (262)
                      ++.               +|++||+++++++..+.+|...|++++|+++++++++++.|+.|++||+.+++  ++..+..
T Consensus       251 ~~~f~p~g~~i~Sgs~D~tvriWd~~~~~~~~~l~~hs~~is~~~f~~d~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~  330 (456)
T KOG0266|consen  251 SVAFSPDGNLLVSGSDDGTVRIWDVRTGECVRKLKGHSDGISGLAFSPDGNLLVSASYDGTIRVWDLETGSKLCLKLLSG  330 (456)
T ss_pred             EEEecCCCCEEEEecCCCcEEEEeccCCeEEEeeeccCCceEEEEECCCCCEEEEcCCCccEEEEECCCCceeeeecccC
Confidence            333               99999999999999999999999999999999999999999999999999998  5667766


Q ss_pred             CCCC--eeeEEEccCCCEEEEEeCCCeEEEEeCCC-----------------------CCccEEEEEcCCCeEEEEecCC
Q 042146          141 HSDP--VTAIDFNRDGTMIVTSSYDGLYRILDAST-----------------------PNGKFILVGTLDNTLRLWNYST  195 (262)
Q Consensus       141 ~~~~--v~~~~~~~~~~~l~~~~~dg~i~~~d~~~-----------------------~~~~~l~~~~~dg~i~i~d~~~  195 (262)
                      +...  ++++.|+|++.++++++.|+.+++||++.                       +.+.++++|+.|+.|++||+.+
T Consensus       331 ~~~~~~~~~~~fsp~~~~ll~~~~d~~~~~w~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~sg~~d~~v~~~~~~s  410 (456)
T KOG0266|consen  331 AENSAPVTSVQFSPNGKYLLSASLDRTLKLWDLRSGKSVGTYTGHSNLVRCIFSPTLSTGGKLIYSGSEDGSVYVWDSSS  410 (456)
T ss_pred             CCCCCceeEEEECCCCcEEEEecCCCeEEEEEccCCcceeeecccCCcceeEecccccCCCCeEEEEeCCceEEEEeCCc
Confidence            6554  99999999999999999999999999986                       6789999999999999999999


Q ss_pred             CceeeEEeccCCceeEEEEEEecCCCeeEEcc-ccceEEEEEcCCCCeEEEeeecCCCcEEEEeecc
Q 042146          196 RKILKTYSGYTNSKYCISSTFSVTNGKYIVSH-RDPVISVASHPAKNIIASGALDNDRTMKIWTQEK  261 (262)
Q Consensus       196 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~v~~~~~~p~~~~l~~~~~d~d~~i~iw~~~~  261 (262)
                      +..+..+.+                      | ...+..++++|...++++++++.|+.+++|+.+.
T Consensus       411 ~~~~~~l~~----------------------h~~~~~~~~~~~~~~~~~~s~s~~~d~~~~~w~~~~  455 (456)
T KOG0266|consen  411 GGILQRLEG----------------------HSKAAVSDLSSHPTENLIASSSFEGDGLIRLWKYDF  455 (456)
T ss_pred             cchhhhhcC----------------------CCCCceeccccCCCcCeeeecCcCCCceEEEecCCC
Confidence            999988887                      7 7889999999999999999866789999998763

>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]

Probab=100.00  E-value=7.8e-34  Score=198.49  Aligned_cols=207  Identities=17%  Similarity=0.369  Sum_probs=163.2

Q ss_pred             CeEEEecCCCeEEEeecCCCCCCCCCC----CCCCccccCCccccc--cceeEEEEecCCCc--cceecccCCcceEEEE
Q 042146           36 RLLTSSSAEKTLLTYSLSSISNFDSTP----PSPLQKFTGHEQGIS--DLATIRLWDVPTAT--SLKTLIGHTNYVFCIN  107 (262)
Q Consensus        36 ~~l~s~~~d~~i~iw~~~~~~~~~~~~----~~~~~~~~~~~~~v~--~~~~i~v~d~~~~~--~~~~~~~~~~~v~~~~  107 (262)
                      -+|+++|.|.+||+|...++.......    .....++......+.  .-..|++||+.++.  ++.++.+|...|+++.
T Consensus        11 viLvsA~YDhTIRfWqa~tG~C~rTiqh~dsqVNrLeiTpdk~~LAaa~~qhvRlyD~~S~np~Pv~t~e~h~kNVtaVg   90 (311)
T KOG0315|consen   11 VILVSAGYDHTIRFWQALTGICSRTIQHPDSQVNRLEITPDKKDLAAAGNQHVRLYDLNSNNPNPVATFEGHTKNVTAVG   90 (311)
T ss_pred             eEEEeccCcceeeeeehhcCeEEEEEecCccceeeEEEcCCcchhhhccCCeeEEEEccCCCCCceeEEeccCCceEEEE
Confidence            479999999999999665543221111    111112222222111  12289999998765  5788999999999999


Q ss_pred             EeCCCCEEEeecCCCeEEEEECCCCeeeeeeecCCCCeeeEEEccCCCEEEEEeCCCeEEEEeCCC--------------
Q 042146          108 FNPQSNRIVSDTFNETIRIWDIKTGKCLKVLPAHSDPVTAIDFNRDGTMIVTSSYDGLYRILDAST--------------  173 (262)
Q Consensus       108 ~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~d~~~--------------  173 (262)
                      |..+|+++++|++||+++|||++...+.+.++ |..+|+++..+|+...|++|..+|.|++||+..              
T Consensus        91 F~~dgrWMyTgseDgt~kIWdlR~~~~qR~~~-~~spVn~vvlhpnQteLis~dqsg~irvWDl~~~~c~~~liPe~~~~  169 (311)
T KOG0315|consen   91 FQCDGRWMYTGSEDGTVKIWDLRSLSCQRNYQ-HNSPVNTVVLHPNQTELISGDQSGNIRVWDLGENSCTHELIPEDDTS  169 (311)
T ss_pred             EeecCeEEEecCCCceEEEEeccCcccchhcc-CCCCcceEEecCCcceEEeecCCCcEEEEEccCCccccccCCCCCcc
Confidence            99999999999999999999999977766664 789999999999999999999999999999987              


Q ss_pred             -------CCccEEEEEcCCCeEEEEecCCCceeeEEeccCCceeEEEEEEecCCCeeEEccccceEEEEEcCCCCeEEEe
Q 042146          174 -------PNGKFILVGTLDNTLRLWNYSTRKILKTYSGYTNSKYCISSTFSVTNGKYIVSHRDPVISVASHPAKNIIASG  246 (262)
Q Consensus       174 -------~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~  246 (262)
                             ++|.+++++...|..++|++-+.+....+..-.                .+..|.+.+..+.+||++++||++
T Consensus       170 i~sl~v~~dgsml~a~nnkG~cyvW~l~~~~~~s~l~P~~----------------k~~ah~~~il~C~lSPd~k~lat~  233 (311)
T KOG0315|consen  170 IQSLTVMPDGSMLAAANNKGNCYVWRLLNHQTASELEPVH----------------KFQAHNGHILRCLLSPDVKYLATC  233 (311)
T ss_pred             eeeEEEcCCCcEEEEecCCccEEEEEccCCCccccceEhh----------------heecccceEEEEEECCCCcEEEee
Confidence                   899999999999999999998754333222100                122399999999999999999999


Q ss_pred             eecCCCcEEEEeecc
Q 042146          247 ALDNDRTMKIWTQEK  261 (262)
Q Consensus       247 ~~d~d~~i~iw~~~~  261 (262)
                      |  .|.+++||+.+.
T Consensus       234 s--sdktv~iwn~~~  246 (311)
T KOG0315|consen  234 S--SDKTVKIWNTDD  246 (311)
T ss_pred             c--CCceEEEEecCC
Confidence            9  999999999764

>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]

Probab=100.00  E-value=8.4e-33  Score=197.99  Aligned_cols=231  Identities=26%  Similarity=0.459  Sum_probs=195.3

Q ss_pred             CCCceeeecccc---cceecccCcCceEEEEEccCCCeEEEecCCCeEEEeecCCCCCCCCCCCC--CCccccCCcc---
Q 042146            3 SDRSLESFRPYT---LTQTLNGHLRAVSYVKFSHDGRLLTSSSAEKTLLTYSLSSISNFDSTPPS--PLQKFTGHEQ---   74 (262)
Q Consensus         3 ~d~~i~~~~~~~---~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~--~~~~~~~~~~---   74 (262)
                      +|+.|..|.-+.   -...+++|.++|..+.|.+|++.+++++.|++++.||.++++........  ....+.....   
T Consensus        67 ~Dr~I~LWnv~gdceN~~~lkgHsgAVM~l~~~~d~s~i~S~gtDk~v~~wD~~tG~~~rk~k~h~~~vNs~~p~rrg~~  146 (338)
T KOG0265|consen   67 SDRAIVLWNVYGDCENFWVLKGHSGAVMELHGMRDGSHILSCGTDKTVRGWDAETGKRIRKHKGHTSFVNSLDPSRRGPQ  146 (338)
T ss_pred             CcceEEEEeccccccceeeeccccceeEeeeeccCCCEEEEecCCceEEEEecccceeeehhccccceeeecCccccCCe
Confidence            678888887333   44567899999999999999999999999999999998875443222211  1111111111   


Q ss_pred             ---ccccceeEEEEecCCCccceecccCCcceEEEEEeCCCCEEEeecCCCeEEEEECCCCeeeeeeecCCCCeeeEEEc
Q 042146           75 ---GISDLATIRLWDVPTATSLKTLIGHTNYVFCINFNPQSNRIVSDTFNETIRIWDIKTGKCLKVLPAHSDPVTAIDFN  151 (262)
Q Consensus        75 ---~v~~~~~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~  151 (262)
                         .....+++++||+++...++++. .+.+++++.|..++..+.+|+-|+.|++||++.+...+.+.+|..+|+.+..+
T Consensus       147 lv~SgsdD~t~kl~D~R~k~~~~t~~-~kyqltAv~f~d~s~qv~sggIdn~ikvWd~r~~d~~~~lsGh~DtIt~lsls  225 (338)
T KOG0265|consen  147 LVCSGSDDGTLKLWDIRKKEAIKTFE-NKYQLTAVGFKDTSDQVISGGIDNDIKVWDLRKNDGLYTLSGHADTITGLSLS  225 (338)
T ss_pred             EEEecCCCceEEEEeecccchhhccc-cceeEEEEEecccccceeeccccCceeeeccccCcceEEeecccCceeeEEec
Confidence               12233499999999988888775 46789999999999999999999999999999999999999999999999999


Q ss_pred             cCCCEEEEEeCCCeEEEEeCCC----------------------------CCccEEEEEcCCCeEEEEecCCCceeeEEe
Q 042146          152 RDGTMIVTSSYDGLYRILDAST----------------------------PNGKFILVGTLDNTLRLWNYSTRKILKTYS  203 (262)
Q Consensus       152 ~~~~~l~~~~~dg~i~~~d~~~----------------------------~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~  203 (262)
                      |+|..+.+-+.|.++++||++.                            |++.++.+|+.|..+++||......+..++
T Consensus       226 ~~gs~llsnsMd~tvrvwd~rp~~p~~R~v~if~g~~hnfeknlL~cswsp~~~~i~ags~dr~vyvwd~~~r~~lyklp  305 (338)
T KOG0265|consen  226 RYGSFLLSNSMDNTVRVWDVRPFAPSQRCVKIFQGHIHNFEKNLLKCSWSPNGTKITAGSADRFVYVWDTTSRRILYKLP  305 (338)
T ss_pred             cCCCccccccccceEEEEEecccCCCCceEEEeecchhhhhhhcceeeccCCCCccccccccceEEEeecccccEEEEcC
Confidence            9999999999999999999987                            899999999999999999999889999999


Q ss_pred             ccCCceeEEEEEEecCCCeeEEccccceEEEEEcCCCCeEEEeeecCCCcEEEEe
Q 042146          204 GYTNSKYCISSTFSVTNGKYIVSHRDPVISVASHPAKNIIASGALDNDRTMKIWT  258 (262)
Q Consensus       204 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~d~d~~i~iw~  258 (262)
                      +                      |.+.|+++.|+|..++|.+++  .|.+|++=.
T Consensus       306 G----------------------h~gsvn~~~Fhp~e~iils~~--sdk~i~lge  336 (338)
T KOG0265|consen  306 G----------------------HYGSVNEVDFHPTEPIILSCS--SDKTIYLGE  336 (338)
T ss_pred             C----------------------cceeEEEeeecCCCcEEEEec--cCceeEeec
Confidence            8                      999999999999999999999  889998643

>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]

Probab=100.00  E-value=2.2e-32  Score=220.67  Aligned_cols=220  Identities=39%  Similarity=0.756  Sum_probs=186.6

Q ss_pred             cceecccC-cCceEEEEEccCCCeEEEecCCCeEEEeecCCCCCCCCCCCCCCccccCCccccccce-------------
Q 042146           15 LTQTLNGH-LRAVSYVKFSHDGRLLTSSSAEKTLLTYSLSSISNFDSTPPSPLQKFTGHEQGISDLA-------------   80 (262)
Q Consensus        15 ~~~~~~~h-~~~v~~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~-------------   80 (262)
                      +.+.+..| ...|.++.|+++|++|++++.|+.+++|+......      .....+.+|...+..+.             
T Consensus       150 ~~~~~~~~~~~sv~~~~fs~~g~~l~~~~~~~~i~~~~~~~~~~------~~~~~l~~h~~~v~~~~fs~d~~~l~s~s~  223 (456)
T KOG0266|consen  150 LEQTLAGHECPSVTCVDFSPDGRALAAASSDGLIRIWKLEGIKS------NLLRELSGHTRGVSDVAFSPDGSYLLSGSD  223 (456)
T ss_pred             eeeeecccccCceEEEEEcCCCCeEEEccCCCcEEEeecccccc------hhhccccccccceeeeEECCCCcEEEEecC
Confidence            35555555 78899999999999999999999999998854331      12222344444443333             


Q ss_pred             --eEEEEec-CCCccceecccCCcceEEEEEeCCCCEEEeecCCCeEEEEECCCCeeeeeeecCCCCeeeEEEccCCCEE
Q 042146           81 --TIRLWDV-PTATSLKTLIGHTNYVFCINFNPQSNRIVSDTFNETIRIWDIKTGKCLKVLPAHSDPVTAIDFNRDGTMI  157 (262)
Q Consensus        81 --~i~v~d~-~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l  157 (262)
                        +|++||+ ..+..++.+++|...|++++|+|+++++++|+.|++|++||+++++++..+.+|.++|++++|++++++|
T Consensus       224 D~tiriwd~~~~~~~~~~l~gH~~~v~~~~f~p~g~~i~Sgs~D~tvriWd~~~~~~~~~l~~hs~~is~~~f~~d~~~l  303 (456)
T KOG0266|consen  224 DKTLRIWDLKDDGRNLKTLKGHSTYVTSVAFSPDGNLLVSGSDDGTVRIWDVRTGECVRKLKGHSDGISGLAFSPDGNLL  303 (456)
T ss_pred             CceEEEeeccCCCeEEEEecCCCCceEEEEecCCCCEEEEecCCCcEEEEeccCCeEEEeeeccCCceEEEEECCCCCEE
Confidence              9999999 5558889999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEEeCCCeEEEEeCCC------------------------CCccEEEEEcCCCeEEEEecCCCceeeEEeccCCceeEEE
Q 042146          158 VTSSYDGLYRILDAST------------------------PNGKFILVGTLDNTLRLWNYSTRKILKTYSGYTNSKYCIS  213 (262)
Q Consensus       158 ~~~~~dg~i~~~d~~~------------------------~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~  213 (262)
                      ++++.|+.|++||+..                        +++.++++++.|+.+++||+..+..+..+.+|...+.   
T Consensus       304 ~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~fsp~~~~ll~~~~d~~~~~w~l~~~~~~~~~~~~~~~~~---  380 (456)
T KOG0266|consen  304 VSASYDGTIRVWDLETGSKLCLKLLSGAENSAPVTSVQFSPNGKYLLSASLDRTLKLWDLRSGKSVGTYTGHSNLVR---  380 (456)
T ss_pred             EEcCCCccEEEEECCCCceeeeecccCCCCCCceeEEEECCCCcEEEEecCCCeEEEEEccCCcceeeecccCCcce---
Confidence            9999999999999754                        7899999999999999999999999999998654321   


Q ss_pred             EEEecCCCeeEEccccceEEEEEcCCCCeEEEeeecCCCcEEEEeecc
Q 042146          214 STFSVTNGKYIVSHRDPVISVASHPAKNIIASGALDNDRTMKIWTQEK  261 (262)
Q Consensus       214 ~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~d~d~~i~iw~~~~  261 (262)
                                      .+.+...++.+.++++|+  .|+.|++|++..
T Consensus       381 ----------------~~~~~~~~~~~~~i~sg~--~d~~v~~~~~~s  410 (456)
T KOG0266|consen  381 ----------------CIFSPTLSTGGKLIYSGS--EDGSVYVWDSSS  410 (456)
T ss_pred             ----------------eEecccccCCCCeEEEEe--CCceEEEEeCCc
Confidence                            234445588999999999  999999999874

>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]

Probab=100.00  E-value=1.3e-32  Score=207.81  Aligned_cols=205  Identities=22%  Similarity=0.412  Sum_probs=177.6

Q ss_pred             cCceEEEEEccCCCeEEEecCCCeEEEeecCCCCCCCCCCCCCCccccCCccccccc---------------eeEEEEec
Q 042146           23 LRAVSYVKFSHDGRLLTSSSAEKTLLTYSLSSISNFDSTPPSPLQKFTGHEQGISDL---------------ATIRLWDV   87 (262)
Q Consensus        23 ~~~v~~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~---------------~~i~v~d~   87 (262)
                      ...|++++|+.+|..||+|+.||.++||+.....         +..+..|..+|..+               +++.+||.
T Consensus       235 nkdVT~L~Wn~~G~~LatG~~~G~~riw~~~G~l---------~~tl~~HkgPI~slKWnk~G~yilS~~vD~ttilwd~  305 (524)
T KOG0273|consen  235 NKDVTSLDWNNDGTLLATGSEDGEARIWNKDGNL---------ISTLGQHKGPIFSLKWNKKGTYILSGGVDGTTILWDA  305 (524)
T ss_pred             cCCcceEEecCCCCeEEEeecCcEEEEEecCchh---------hhhhhccCCceEEEEEcCCCCEEEeccCCccEEEEec
Confidence            4679999999999999999999999999876532         22333333333322               28999999


Q ss_pred             CCCccceecccCCcceEEEEEeCCCCEEEeecCCCeEEEEECCCCeeeeeeecCCCCeeeEEEccCCCEEEEEeCCCeEE
Q 042146           88 PTATSLKTLIGHTNYVFCINFNPQSNRIVSDTFNETIRIWDIKTGKCLKVLPAHSDPVTAIDFNRDGTMIVTSSYDGLYR  167 (262)
Q Consensus        88 ~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~  167 (262)
                      .+++..+.+.-|..+-..+.|-. ...+++.+.|+.|+|+.+....++.++.+|.++|.++.|.|.+.+|++|+.|++++
T Consensus       306 ~~g~~~q~f~~~s~~~lDVdW~~-~~~F~ts~td~~i~V~kv~~~~P~~t~~GH~g~V~alk~n~tg~LLaS~SdD~Tlk  384 (524)
T KOG0273|consen  306 HTGTVKQQFEFHSAPALDVDWQS-NDEFATSSTDGCIHVCKVGEDRPVKTFIGHHGEVNALKWNPTGSLLASCSDDGTLK  384 (524)
T ss_pred             cCceEEEeeeeccCCccceEEec-CceEeecCCCceEEEEEecCCCcceeeecccCceEEEEECCCCceEEEecCCCeeE
Confidence            99999999888888877788874 45688888999999999999999999999999999999999999999999999999


Q ss_pred             EEeCCC-----------------------------CCccEEEEEcCCCeEEEEecCCCceeeEEeccCCceeEEEEEEec
Q 042146          168 ILDAST-----------------------------PNGKFILVGTLDNTLRLWNYSTRKILKTYSGYTNSKYCISSTFSV  218 (262)
Q Consensus       168 ~~d~~~-----------------------------~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~  218 (262)
                      +|.+..                             ..+..+++++.|++|++||+..+.++..|..              
T Consensus       385 iWs~~~~~~~~~l~~Hskei~t~~wsp~g~v~~n~~~~~~l~sas~dstV~lwdv~~gv~i~~f~k--------------  450 (524)
T KOG0273|consen  385 IWSMGQSNSVHDLQAHSKEIYTIKWSPTGPVTSNPNMNLMLASASFDSTVKLWDVESGVPIHTLMK--------------  450 (524)
T ss_pred             eeecCCCcchhhhhhhccceeeEeecCCCCccCCCcCCceEEEeecCCeEEEEEccCCceeEeecc--------------
Confidence            999665                             3466899999999999999999999999987              


Q ss_pred             CCCeeEEccccceEEEEEcCCCCeEEEeeecCCCcEEEEeecc
Q 042146          219 TNGKYIVSHRDPVISVASHPAKNIIASGALDNDRTMKIWTQEK  261 (262)
Q Consensus       219 ~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~d~d~~i~iw~~~~  261 (262)
                              |..+|.+++|+|+|+++|+|+  .||.|.+|+++.
T Consensus       451 --------H~~pVysvafS~~g~ylAsGs--~dg~V~iws~~~  483 (524)
T KOG0273|consen  451 --------HQEPVYSVAFSPNGRYLASGS--LDGCVHIWSTKT  483 (524)
T ss_pred             --------CCCceEEEEecCCCcEEEecC--CCCeeEeccccc
Confidence                    999999999999999999999  899999999763

>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]

Probab=100.00  E-value=6.3e-33  Score=198.62  Aligned_cols=189  Identities=23%  Similarity=0.444  Sum_probs=168.2

Q ss_pred             cceecccCcCceEEEEEccCCCeEEEecCCCeEEEeecCCCCCCCCCCCCCCccccCCccccccceeEEEEecCCCccce
Q 042146           15 LTQTLNGHLRAVSYVKFSHDGRLLTSSSAEKTLLTYSLSSISNFDSTPPSPLQKFTGHEQGISDLATIRLWDVPTATSLK   94 (262)
Q Consensus        15 ~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~i~v~d~~~~~~~~   94 (262)
                      +...+.+|++.|..+.|+|+|.+||+|+.|..|.+|++..                                  ..+-..
T Consensus        39 p~m~l~gh~geI~~~~F~P~gs~~aSgG~Dr~I~LWnv~g----------------------------------dceN~~   84 (338)
T KOG0265|consen   39 PIMLLPGHKGEIYTIKFHPDGSCFASGGSDRAIVLWNVYG----------------------------------DCENFW   84 (338)
T ss_pred             hhhhcCCCcceEEEEEECCCCCeEeecCCcceEEEEeccc----------------------------------ccccee
Confidence            5567789999999999999999999999999999997543                                  122334


Q ss_pred             ecccCCcceEEEEEeCCCCEEEeecCCCeEEEEECCCCeeeeeeecCCCCeeeEEEccCC-CEEEEEeCCCeEEEEeCCC
Q 042146           95 TLIGHTNYVFCINFNPQSNRIVSDTFNETIRIWDIKTGKCLKVLPAHSDPVTAIDFNRDG-TMIVTSSYDGLYRILDAST  173 (262)
Q Consensus        95 ~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~dg~i~~~d~~~  173 (262)
                      .+++|++.|..+.|.++++.+++++.|.+|+.||.++++.++.++.|..-|+++.-+.-| .++.+++.||++++||+|.
T Consensus        85 ~lkgHsgAVM~l~~~~d~s~i~S~gtDk~v~~wD~~tG~~~rk~k~h~~~vNs~~p~rrg~~lv~SgsdD~t~kl~D~R~  164 (338)
T KOG0265|consen   85 VLKGHSGAVMELHGMRDGSHILSCGTDKTVRGWDAETGKRIRKHKGHTSFVNSLDPSRRGPQLVCSGSDDGTLKLWDIRK  164 (338)
T ss_pred             eeccccceeEeeeeccCCCEEEEecCCceEEEEecccceeeehhccccceeeecCccccCCeEEEecCCCceEEEEeecc
Confidence            566999999999999999999999999999999999999999999999999999844444 4677888999999999995


Q ss_pred             -------------------CCccEEEEEcCCCeEEEEecCCCceeeEEeccCCceeEEEEEEecCCCeeEEccccceEEE
Q 042146          174 -------------------PNGKFILVGTLDNTLRLWNYSTRKILKTYSGYTNSKYCISSTFSVTNGKYIVSHRDPVISV  234 (262)
Q Consensus       174 -------------------~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~  234 (262)
                                         ..+..+++|+-|+.|++||++.+.....+.+                      |.++|+.+
T Consensus       165 k~~~~t~~~kyqltAv~f~d~s~qv~sggIdn~ikvWd~r~~d~~~~lsG----------------------h~DtIt~l  222 (338)
T KOG0265|consen  165 KEAIKTFENKYQLTAVGFKDTSDQVISGGIDNDIKVWDLRKNDGLYTLSG----------------------HADTITGL  222 (338)
T ss_pred             cchhhccccceeEEEEEecccccceeeccccCceeeeccccCcceEEeec----------------------ccCceeeE
Confidence                               4567789999999999999999999999998                      99999999


Q ss_pred             EEcCCCCeEEEeeecCCCcEEEEeecc
Q 042146          235 ASHPAKNIIASGALDNDRTMKIWTQEK  261 (262)
Q Consensus       235 ~~~p~~~~l~~~~~d~d~~i~iw~~~~  261 (262)
                      ..+|+|.++.+-+  -|.++++||+..
T Consensus       223 sls~~gs~llsns--Md~tvrvwd~rp  247 (338)
T KOG0265|consen  223 SLSRYGSFLLSNS--MDNTVRVWDVRP  247 (338)
T ss_pred             EeccCCCcccccc--ccceEEEEEecc
Confidence            9999999999999  679999999864

>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]

Probab=100.00  E-value=4.2e-32  Score=199.05  Aligned_cols=215  Identities=20%  Similarity=0.379  Sum_probs=188.9

Q ss_pred             ccceecccCcCceEEEEEccCCCeEEEecCCCeEEEeecCCCCCCCCCCCCCCccccCCccccccce-------------
Q 042146           14 TLTQTLNGHLRAVSYVKFSHDGRLLTSSSAEKTLLTYSLSSISNFDSTPPSPLQKFTGHEQGISDLA-------------   80 (262)
Q Consensus        14 ~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~-------------   80 (262)
                      ..+.+|..|+.+|.+++.+|+.++++||+.|..-.+|+..+        ......+.+|...|.+..             
T Consensus        55 dS~~tF~~H~~svFavsl~P~~~l~aTGGgDD~AflW~~~~--------ge~~~eltgHKDSVt~~~FshdgtlLATGdm  126 (399)
T KOG0296|consen   55 DSLVTFDKHTDSVFAVSLHPNNNLVATGGGDDLAFLWDIST--------GEFAGELTGHKDSVTCCSFSHDGTLLATGDM  126 (399)
T ss_pred             cceeehhhcCCceEEEEeCCCCceEEecCCCceEEEEEccC--------CcceeEecCCCCceEEEEEccCceEEEecCC
Confidence            34678899999999999999999999999999999996644        345566777777776554             


Q ss_pred             --eEEEEecCCCccceecccCCcceEEEEEeCCCCEEEeecCCCeEEEEECCCCeeeeeeecCCCCeeeEEEccCCCEEE
Q 042146           81 --TIRLWDVPTATSLKTLIGHTNYVFCINFNPQSNRIVSDTFNETIRIWDIKTGKCLKVLPAHSDPVTAIDFNRDGTMIV  158 (262)
Q Consensus        81 --~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~  158 (262)
                        .|+||...++.....+......+.=+.|||.+..|++|+.||.+-+|.+.++...+.+.+|..++++=.|.|+|+.++
T Consensus       127 sG~v~v~~~stg~~~~~~~~e~~dieWl~WHp~a~illAG~~DGsvWmw~ip~~~~~kv~~Gh~~~ct~G~f~pdGKr~~  206 (399)
T KOG0296|consen  127 SGKVLVFKVSTGGEQWKLDQEVEDIEWLKWHPRAHILLAGSTDGSVWMWQIPSQALCKVMSGHNSPCTCGEFIPDGKRIL  206 (399)
T ss_pred             CccEEEEEcccCceEEEeecccCceEEEEecccccEEEeecCCCcEEEEECCCcceeeEecCCCCCcccccccCCCceEE
Confidence              899999999998888876677888999999999999999999999999998888889999999999999999999999


Q ss_pred             EEeCCCeEEEEeCCC-----------------------------------------------------------------
Q 042146          159 TSSYDGLYRILDAST-----------------------------------------------------------------  173 (262)
Q Consensus       159 ~~~~dg~i~~~d~~~-----------------------------------------------------------------  173 (262)
                      ++..||+|++|+..+                                                                 
T Consensus       207 tgy~dgti~~Wn~ktg~p~~~~~~~e~~~~~~~~~~~~~~~~~~g~~e~~~~~~~~~sgKVv~~~n~~~~~l~~~~e~~~  286 (399)
T KOG0296|consen  207 TGYDDGTIIVWNPKTGQPLHKITQAEGLELPCISLNLAGSTLTKGNSEGVACGVNNGSGKVVNCNNGTVPELKPSQEELD  286 (399)
T ss_pred             EEecCceEEEEecCCCceeEEecccccCcCCccccccccceeEeccCCccEEEEccccceEEEecCCCCccccccchhhh
Confidence            999999999999876                                                                 


Q ss_pred             -------------------------------------------------CCccEEEEEcCCCeEEEEecCCCceeeEEec
Q 042146          174 -------------------------------------------------PNGKFILVGTLDNTLRLWNYSTRKILKTYSG  204 (262)
Q Consensus       174 -------------------------------------------------~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~  204 (262)
                                                                       .+..+|++++.+|.|+.||.++|++..++.+
T Consensus       287 esve~~~~ss~lpL~A~G~vdG~i~iyD~a~~~~R~~c~he~~V~~l~w~~t~~l~t~c~~g~v~~wDaRtG~l~~~y~G  366 (399)
T KOG0296|consen  287 ESVESIPSSSKLPLAACGSVDGTIAIYDLAASTLRHICEHEDGVTKLKWLNTDYLLTACANGKVRQWDARTGQLKFTYTG  366 (399)
T ss_pred             hhhhhcccccccchhhcccccceEEEEecccchhheeccCCCceEEEEEcCcchheeeccCceEEeeeccccceEEEEec
Confidence                                                             1256777777788888888888877777777


Q ss_pred             cCCceeEEEEEEecCCCeeEEccccceEEEEEcCCCCeEEEeeecCCCcEEEEeec
Q 042146          205 YTNSKYCISSTFSVTNGKYIVSHRDPVISVASHPAKNIIASGALDNDRTMKIWTQE  260 (262)
Q Consensus       205 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~d~d~~i~iw~~~  260 (262)
                                            |..+|.+++.+|++++++|+|  .|++.+||+.+
T Consensus       367 ----------------------H~~~Il~f~ls~~~~~vvT~s--~D~~a~VF~v~  398 (399)
T KOG0296|consen  367 ----------------------HQMGILDFALSPQKRLVVTVS--DDNTALVFEVP  398 (399)
T ss_pred             ----------------------CchheeEEEEcCCCcEEEEec--CCCeEEEEecC
Confidence                                  999999999999999999999  89999999875

>KOG0645 consensus WD40 repeat protein [General function prediction only]

Probab=100.00  E-value=8.2e-32  Score=190.44  Aligned_cols=191  Identities=26%  Similarity=0.430  Sum_probs=162.3

Q ss_pred             cccceecccCcCceEEEEEccC-CCeEEEecCCCeEEEeecCCCCCCCCCCCCCCccccCCccccccceeEEEEecCCCc
Q 042146           13 YTLTQTLNGHLRAVSYVKFSHD-GRLLTSSSAEKTLLTYSLSSISNFDSTPPSPLQKFTGHEQGISDLATIRLWDVPTAT   91 (262)
Q Consensus        13 ~~~~~~~~~h~~~v~~~~~~~~-~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~i~v~d~~~~~   91 (262)
                      ...++.+++|++.+..++|+|- |..||+++.|+.|++|+....                                ++..
T Consensus         4 l~~~~~~~gh~~r~W~~awhp~~g~ilAscg~Dk~vriw~~~~~--------------------------------~s~~   51 (312)
T KOG0645|consen    4 LILEQKLSGHKDRVWSVAWHPGKGVILASCGTDKAVRIWSTSSG--------------------------------DSWT   51 (312)
T ss_pred             ceeEEeecCCCCcEEEEEeccCCceEEEeecCCceEEEEecCCC--------------------------------CcEE
Confidence            3467889999999999999998 889999999999999976421                                0112


Q ss_pred             cceec-ccCCcceEEEEEeCCCCEEEeecCCCeEEEEECCC--CeeeeeeecCCCCeeeEEEccCCCEEEEEeCCCeEEE
Q 042146           92 SLKTL-IGHTNYVFCINFNPQSNRIVSDTFNETIRIWDIKT--GKCLKVLPAHSDPVTAIDFNRDGTMIVTSSYDGLYRI  168 (262)
Q Consensus        92 ~~~~~-~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~--~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~  168 (262)
                      +...+ .+|+..|.+++|+|.|++|++||.|.++.||.-..  .+++..+.+|...|.+++|+++|++|++|+.|+.|-+
T Consensus        52 ck~vld~~hkrsVRsvAwsp~g~~La~aSFD~t~~Iw~k~~~efecv~~lEGHEnEVK~Vaws~sG~~LATCSRDKSVWi  131 (312)
T KOG0645|consen   52 CKTVLDDGHKRSVRSVAWSPHGRYLASASFDATVVIWKKEDGEFECVATLEGHENEVKCVAWSASGNYLATCSRDKSVWI  131 (312)
T ss_pred             EEEeccccchheeeeeeecCCCcEEEEeeccceEEEeecCCCceeEEeeeeccccceeEEEEcCCCCEEEEeeCCCeEEE
Confidence            22222 36899999999999999999999999999997653  3788999999999999999999999999999999999


Q ss_pred             EeCCC-----------------------CCccEEEEEcCCCeEEEEecCC---CceeeEEeccCCceeEEEEEEecCCCe
Q 042146          169 LDAST-----------------------PNGKFILVGTLDNTLRLWNYST---RKILKTYSGYTNSKYCISSTFSVTNGK  222 (262)
Q Consensus       169 ~d~~~-----------------------~~~~~l~~~~~dg~i~i~d~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~  222 (262)
                      |.+..                       |...+|++++.|.+|++|+-..   -.+++++.+                  
T Consensus       132 We~deddEfec~aVL~~HtqDVK~V~WHPt~dlL~S~SYDnTIk~~~~~~dddW~c~~tl~g------------------  193 (312)
T KOG0645|consen  132 WEIDEDDEFECIAVLQEHTQDVKHVIWHPTEDLLFSCSYDNTIKVYRDEDDDDWECVQTLDG------------------  193 (312)
T ss_pred             EEecCCCcEEEEeeeccccccccEEEEcCCcceeEEeccCCeEEEEeecCCCCeeEEEEecC------------------
Confidence            99874                       7889999999999999998762   357888887                  


Q ss_pred             eEEccccceEEEEEcCCCCeEEEeeecCCCcEEEEee
Q 042146          223 YIVSHRDPVISVASHPAKNIIASGALDNDRTMKIWTQ  259 (262)
Q Consensus       223 ~~~~~~~~v~~~~~~p~~~~l~~~~~d~d~~i~iw~~  259 (262)
                          |...|.+++|+|.|..|++++  +|++++||..
T Consensus       194 ----~~~TVW~~~F~~~G~rl~s~s--dD~tv~Iw~~  224 (312)
T KOG0645|consen  194 ----HENTVWSLAFDNIGSRLVSCS--DDGTVSIWRL  224 (312)
T ss_pred             ----ccceEEEEEecCCCceEEEec--CCcceEeeee
Confidence                777888888888888888888  8888888873

>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]

Probab=100.00  E-value=7.4e-34  Score=206.20  Aligned_cols=236  Identities=27%  Similarity=0.486  Sum_probs=182.3

Q ss_pred             cCcCceEEEEEccCCCeEEEecCCCeEEEeecCCCCCCCCCCCCCCccccCCcccccc---------------ceeEEEE
Q 042146           21 GHLRAVSYVKFSHDGRLLTSSSAEKTLLTYSLSSISNFDSTPPSPLQKFTGHEQGISD---------------LATIRLW   85 (262)
Q Consensus        21 ~h~~~v~~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~---------------~~~i~v~   85 (262)
                      +....+.|..|+|||+||++|+.||.|.+||+.+++......-.....+-.+...+.+               .+.|++|
T Consensus       211 g~KSh~EcA~FSPDgqyLvsgSvDGFiEVWny~~GKlrKDLkYQAqd~fMMmd~aVlci~FSRDsEMlAsGsqDGkIKvW  290 (508)
T KOG0275|consen  211 GQKSHVECARFSPDGQYLVSGSVDGFIEVWNYTTGKLRKDLKYQAQDNFMMMDDAVLCISFSRDSEMLASGSQDGKIKVW  290 (508)
T ss_pred             ccccchhheeeCCCCceEeeccccceeeeehhccchhhhhhhhhhhcceeecccceEEEeecccHHHhhccCcCCcEEEE
Confidence            3456689999999999999999999999999877644332222222222233333322               3389999


Q ss_pred             ecCCCccceecc-cCCcceEEEEEeCCCCEEEeecCCCeEEEEECCCCeeeeeeecCCCCeeeEEEccCCCEEEEEeCCC
Q 042146           86 DVPTATSLKTLI-GHTNYVFCINFNPQSNRIVSDTFNETIRIWDIKTGKCLKVLPAHSDPVTAIDFNRDGTMIVTSSYDG  164 (262)
Q Consensus        86 d~~~~~~~~~~~-~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg  164 (262)
                      .+++|++++.+. .|...|+|+.|+.|+..+++++.|.++++.-+.+|+++.++++|.+.|+...|.++|.++++++.||
T Consensus       291 ri~tG~ClRrFdrAHtkGvt~l~FSrD~SqiLS~sfD~tvRiHGlKSGK~LKEfrGHsSyvn~a~ft~dG~~iisaSsDg  370 (508)
T KOG0275|consen  291 RIETGQCLRRFDRAHTKGVTCLSFSRDNSQILSASFDQTVRIHGLKSGKCLKEFRGHSSYVNEATFTDDGHHIISASSDG  370 (508)
T ss_pred             EEecchHHHHhhhhhccCeeEEEEccCcchhhcccccceEEEeccccchhHHHhcCccccccceEEcCCCCeEEEecCCc
Confidence            999999999987 8999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             eEEEEeCCC-----------------------CCccEEEEEcCCCeEEEEecCCCceeeEEeccCCce-eEEEEE-----
Q 042146          165 LYRILDAST-----------------------PNGKFILVGTLDNTLRLWNYSTRKILKTYSGYTNSK-YCISST-----  215 (262)
Q Consensus       165 ~i~~~d~~~-----------------------~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~-~~~~~~-----  215 (262)
                      +|++|+..+                       .+...++++....+++|-++. |+.++.+....... .-+...     
T Consensus       371 tvkvW~~KtteC~~Tfk~~~~d~~vnsv~~~PKnpeh~iVCNrsntv~imn~q-GQvVrsfsSGkREgGdFi~~~lSpkG  449 (508)
T KOG0275|consen  371 TVKVWHGKTTECLSTFKPLGTDYPVNSVILLPKNPEHFIVCNRSNTVYIMNMQ-GQVVRSFSSGKREGGDFINAILSPKG  449 (508)
T ss_pred             cEEEecCcchhhhhhccCCCCcccceeEEEcCCCCceEEEEcCCCeEEEEecc-ceEEeeeccCCccCCceEEEEecCCC
Confidence            999999876                       345667777777788887765 66666665322111 111111     


Q ss_pred             --------------EecCCC---eeEEccccceEEEEEcCCCCeEEEeeecCCCcEEEEee
Q 042146          216 --------------FSVTNG---KYIVSHRDPVISVASHPAKNIIASGALDNDRTMKIWTQ  259 (262)
Q Consensus       216 --------------~~~~~~---~~~~~~~~~v~~~~~~p~~~~l~~~~~d~d~~i~iw~~  259 (262)
                                    |....+   ..+..|+..|..++-+|..+.||+-+  +||.+++|+.
T Consensus       450 ewiYcigED~vlYCF~~~sG~LE~tl~VhEkdvIGl~HHPHqNllAsYs--EDgllKLWkp  508 (508)
T KOG0275|consen  450 EWIYCIGEDGVLYCFSVLSGKLERTLPVHEKDVIGLTHHPHQNLLASYS--EDGLLKLWKP  508 (508)
T ss_pred             cEEEEEccCcEEEEEEeecCceeeeeecccccccccccCcccchhhhhc--ccchhhhcCC
Confidence                          111111   11222888999999999999999999  9999999973

>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=1.8e-32  Score=221.31  Aligned_cols=223  Identities=27%  Similarity=0.493  Sum_probs=189.4

Q ss_pred             eeeecccccceecccCcCceEEEEEccCCCeEEEecCCCeEEEeecCCCCCCCCCCCCCCccccCCcccccc--------
Q 042146            7 LESFRPYTLTQTLNGHLRAVSYVKFSHDGRLLTSSSAEKTLLTYSLSSISNFDSTPPSPLQKFTGHEQGISD--------   78 (262)
Q Consensus         7 i~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~--------   78 (262)
                      +|+|+-..++..|..|.++|+.++|+|++.+|++|+.|-.|++|++...        +.+..+.+|...|..        
T Consensus        35 lWDYRM~tli~rFdeHdGpVRgv~FH~~qplFVSGGDDykIkVWnYk~r--------rclftL~GHlDYVRt~~FHheyP  106 (1202)
T KOG0292|consen   35 LWDYRMGTLIDRFDEHDGPVRGVDFHPTQPLFVSGGDDYKIKVWNYKTR--------RCLFTLLGHLDYVRTVFFHHEYP  106 (1202)
T ss_pred             eehhhhhhHHhhhhccCCccceeeecCCCCeEEecCCccEEEEEecccc--------eehhhhccccceeEEeeccCCCc
Confidence            4555678899999999999999999999999999999999999976553        334444444443332        


Q ss_pred             -------ceeEEEEecCCCccceecccCCcceEEEEEeCCCCEEEeecCCCeEEEEECCCCe------------------
Q 042146           79 -------LATIRLWDVPTATSLKTLIGHTNYVFCINFNPQSNRIVSDTFNETIRIWDIKTGK------------------  133 (262)
Q Consensus        79 -------~~~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~------------------  133 (262)
                             ..+|+||+..+++++..+.+|...|.|.+|+|...+++++|-|.+|+|||+..-+                  
T Consensus       107 WIlSASDDQTIrIWNwqsr~~iavltGHnHYVMcAqFhptEDlIVSaSLDQTVRVWDisGLRkk~~~pg~~e~~~~~~~~  186 (1202)
T KOG0292|consen  107 WILSASDDQTIRIWNWQSRKCIAVLTGHNHYVMCAQFHPTEDLIVSASLDQTVRVWDISGLRKKNKAPGSLEDQMRGQQG  186 (1202)
T ss_pred             eEEEccCCCeEEEEeccCCceEEEEecCceEEEeeccCCccceEEEecccceEEEEeecchhccCCCCCCchhhhhcccc
Confidence                   3399999999999999999999999999999999999999999999999984210                  


Q ss_pred             -----------eeeeeecCCCCeeeEEEccCCCEEEEEeCCCeEEEEeCCC----------------------CCccEEE
Q 042146          134 -----------CLKVLPAHSDPVTAIDFNRDGTMIVTSSYDGLYRILDAST----------------------PNGKFIL  180 (262)
Q Consensus       134 -----------~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~d~~~----------------------~~~~~l~  180 (262)
                                 ..+.+.+|...|+-++|+|.-.++++|+.|+.|++|.+..                      |..+.++
T Consensus       187 ~~dLfg~~DaVVK~VLEGHDRGVNwaAfhpTlpliVSG~DDRqVKlWrmnetKaWEvDtcrgH~nnVssvlfhp~q~lIl  266 (1202)
T KOG0292|consen  187 NSDLFGQTDAVVKHVLEGHDRGVNWAAFHPTLPLIVSGADDRQVKLWRMNETKAWEVDTCRGHYNNVSSVLFHPHQDLIL  266 (1202)
T ss_pred             chhhcCCcCeeeeeeecccccccceEEecCCcceEEecCCcceeeEEEeccccceeehhhhcccCCcceEEecCccceeE
Confidence                       1234578999999999999999999999999999999876                      7779999


Q ss_pred             EEcCCCeEEEEecCCCceeeEEeccCCceeEEEEEEecCCCeeEEccccceEEEEEcCCCCeEEEeeecCCCcEEEEeec
Q 042146          181 VGTLDNTLRLWNYSTRKILKTYSGYTNSKYCISSTFSVTNGKYIVSHRDPVISVASHPAKNIIASGALDNDRTMKIWTQE  260 (262)
Q Consensus       181 ~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~d~d~~i~iw~~~  260 (262)
                      +.++|+.|+|||+...+.+++++.                      ..++...++-+|..+++++|   .|+-+.+|+++
T Consensus       267 SnsEDksirVwDm~kRt~v~tfrr----------------------endRFW~laahP~lNLfAAg---HDsGm~VFkle  321 (1202)
T KOG0292|consen  267 SNSEDKSIRVWDMTKRTSVQTFRR----------------------ENDRFWILAAHPELNLFAAG---HDSGMIVFKLE  321 (1202)
T ss_pred             ecCCCccEEEEecccccceeeeec----------------------cCCeEEEEEecCCcceeeee---cCCceEEEEEc
Confidence            999999999999999999999986                      55677888889998888877   47778888876


Q ss_pred             cC
Q 042146          261 KE  262 (262)
Q Consensus       261 ~~  262 (262)
                      .|
T Consensus       322 RE  323 (1202)
T KOG0292|consen  322 RE  323 (1202)
T ss_pred             cc
Confidence            43

>PLN00181 protein SPA1-RELATED; Provisional

Probab=100.00  E-value=1.9e-31  Score=229.60  Aligned_cols=217  Identities=18%  Similarity=0.345  Sum_probs=174.0

Q ss_pred             cccCcCceEEEEEccCCCeEEEecCCCeEEEeecCCCCCCCCCCC---------CCCccccC--C-cc---ccccceeEE
Q 042146           19 LNGHLRAVSYVKFSHDGRLLTSSSAEKTLLTYSLSSISNFDSTPP---------SPLQKFTG--H-EQ---GISDLATIR   83 (262)
Q Consensus        19 ~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~---------~~~~~~~~--~-~~---~v~~~~~i~   83 (262)
                      +..|.+.|.+++|+|++++||+|+.|+.|+||++...........         ..+..+..  . ..   .....+.|+
T Consensus       479 ~~~~~~~V~~i~fs~dg~~latgg~D~~I~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~las~~~Dg~v~  558 (793)
T PLN00181        479 LLNSSNLVCAIGFDRDGEFFATAGVNKKIKIFECESIIKDGRDIHYPVVELASRSKLSGICWNSYIKSQVASSNFEGVVQ  558 (793)
T ss_pred             ccCCCCcEEEEEECCCCCEEEEEeCCCEEEEEECCcccccccccccceEEecccCceeeEEeccCCCCEEEEEeCCCeEE
Confidence            445899999999999999999999999999999754211000000         00001110  0 11   112234899


Q ss_pred             EEecCCCccceecccCCcceEEEEEeC-CCCEEEeecCCCeEEEEECCCCeeeeeeecCCCCeeeEEEc-cCCCEEEEEe
Q 042146           84 LWDVPTATSLKTLIGHTNYVFCINFNP-QSNRIVSDTFNETIRIWDIKTGKCLKVLPAHSDPVTAIDFN-RDGTMIVTSS  161 (262)
Q Consensus        84 v~d~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~-~~~~~l~~~~  161 (262)
                      +||+.+++.+..+.+|...|++++|+| ++.+|++|+.||.|++||++++..+..+.. ...+.++.|+ +++.+|++|+
T Consensus       559 lWd~~~~~~~~~~~~H~~~V~~l~~~p~~~~~L~Sgs~Dg~v~iWd~~~~~~~~~~~~-~~~v~~v~~~~~~g~~latgs  637 (793)
T PLN00181        559 VWDVARSQLVTEMKEHEKRVWSIDYSSADPTLLASGSDDGSVKLWSINQGVSIGTIKT-KANICCVQFPSESGRSLAFGS  637 (793)
T ss_pred             EEECCCCeEEEEecCCCCCEEEEEEcCCCCCEEEEEcCCCEEEEEECCCCcEEEEEec-CCCeEEEEEeCCCCCEEEEEe
Confidence            999999999999999999999999997 789999999999999999999988888864 4679999995 4789999999


Q ss_pred             CCCeEEEEeCCC--------------------CCccEEEEEcCCCeEEEEecCCC------ceeeEEeccCCceeEEEEE
Q 042146          162 YDGLYRILDAST--------------------PNGKFILVGTLDNTLRLWNYSTR------KILKTYSGYTNSKYCISST  215 (262)
Q Consensus       162 ~dg~i~~~d~~~--------------------~~~~~l~~~~~dg~i~i~d~~~~------~~~~~~~~~~~~~~~~~~~  215 (262)
                      .||.|++||++.                    .++.+|++++.|+.|++||++.+      .++..+.+           
T Consensus       638 ~dg~I~iwD~~~~~~~~~~~~~h~~~V~~v~f~~~~~lvs~s~D~~ikiWd~~~~~~~~~~~~l~~~~g-----------  706 (793)
T PLN00181        638 ADHKVYYYDLRNPKLPLCTMIGHSKTVSYVRFVDSSTLVSSSTDNTLKLWDLSMSISGINETPLHSFMG-----------  706 (793)
T ss_pred             CCCeEEEEECCCCCccceEecCCCCCEEEEEEeCCCEEEEEECCCEEEEEeCCCCccccCCcceEEEcC-----------
Confidence            999999999875                    46788999999999999999753      34555554           


Q ss_pred             EecCCCeeEEccccceEEEEEcCCCCeEEEeeecCCCcEEEEeec
Q 042146          216 FSVTNGKYIVSHRDPVISVASHPAKNIIASGALDNDRTMKIWTQE  260 (262)
Q Consensus       216 ~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~d~d~~i~iw~~~  260 (262)
                                 |...+.+++|+|++.+|++|+  .|+.|++|+..
T Consensus       707 -----------h~~~i~~v~~s~~~~~lasgs--~D~~v~iw~~~  738 (793)
T PLN00181        707 -----------HTNVKNFVGLSVSDGYIATGS--ETNEVFVYHKA  738 (793)
T ss_pred             -----------CCCCeeEEEEcCCCCEEEEEe--CCCEEEEEECC
Confidence                       888899999999999999999  89999999964

>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]

Probab=100.00  E-value=1.2e-31  Score=205.15  Aligned_cols=229  Identities=22%  Similarity=0.382  Sum_probs=183.2

Q ss_pred             eecccccceecccCcCceEEEEEccCCCeEEEecCCCeEEEeecCCCCCC-----CC-----------------------
Q 042146            9 SFRPYTLTQTLNGHLRAVSYVKFSHDGRLLTSSSAEKTLLTYSLSSISNF-----DS-----------------------   60 (262)
Q Consensus         9 ~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~-----~~-----------------------   60 (262)
                      ..+.......+.+|..+++-..|+|.|.|+|+|...|.|||||.......     ..                       
T Consensus        45 ~i~~~~~~~iYtEH~~~vtVAkySPsG~yiASGD~sG~vRIWdtt~~~hiLKnef~v~aG~I~Di~Wd~ds~RI~avGEG  124 (603)
T KOG0318|consen   45 NIDNPASVDIYTEHAHQVTVAKYSPSGFYIASGDVSGKVRIWDTTQKEHILKNEFQVLAGPIKDISWDFDSKRIAAVGEG  124 (603)
T ss_pred             ECCCccceeeeccccceeEEEEeCCCceEEeecCCcCcEEEEeccCcceeeeeeeeecccccccceeCCCCcEEEEEecC
Confidence            34455667888999999999999999999999999999999997652110     00                       


Q ss_pred             ----------CCCCCCccccCCccccccce----------------eEEEEecCCCccceecccCCcceEEEEEeCCCCE
Q 042146           61 ----------TPPSPLQKFTGHEQGISDLA----------------TIRLWDVPTATSLKTLIGHTNYVFCINFNPQSNR  114 (262)
Q Consensus        61 ----------~~~~~~~~~~~~~~~v~~~~----------------~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~  114 (262)
                                ..+...-++.+|...+.++.                .|.+|+-..-+...++..|..-|+|+.|+|||.+
T Consensus       125 rerfg~~F~~DSG~SvGei~GhSr~ins~~~KpsRPfRi~T~sdDn~v~ffeGPPFKFk~s~r~HskFV~~VRysPDG~~  204 (603)
T KOG0318|consen  125 RERFGHVFLWDSGNSVGEITGHSRRINSVDFKPSRPFRIATGSDDNTVAFFEGPPFKFKSSFREHSKFVNCVRYSPDGSR  204 (603)
T ss_pred             ccceeEEEEecCCCccceeeccceeEeeeeccCCCceEEEeccCCCeEEEeeCCCeeeeecccccccceeeEEECCCCCe
Confidence                      00111111222222222111                3344443333344456678899999999999999


Q ss_pred             EEeecCCCeEEEEECCCCeeeeeee---cCCCCeeeEEEccCCCEEEEEeCCCeEEEEeCCC------------------
Q 042146          115 IVSDTFNETIRIWDIKTGKCLKVLP---AHSDPVTAIDFNRDGTMIVTSSYDGLYRILDAST------------------  173 (262)
Q Consensus       115 l~~~~~dg~i~vwd~~~~~~~~~~~---~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~d~~~------------------  173 (262)
                      +++++.||+|.+||-.+++.+..+.   +|.+.|.+++|+||+..+++++.|.++++||+..                  
T Consensus       205 Fat~gsDgki~iyDGktge~vg~l~~~~aHkGsIfalsWsPDs~~~~T~SaDkt~KIWdVs~~slv~t~~~~~~v~dqqv  284 (603)
T KOG0318|consen  205 FATAGSDGKIYIYDGKTGEKVGELEDSDAHKGSIFALSWSPDSTQFLTVSADKTIKIWDVSTNSLVSTWPMGSTVEDQQV  284 (603)
T ss_pred             EEEecCCccEEEEcCCCccEEEEecCCCCccccEEEEEECCCCceEEEecCCceEEEEEeeccceEEEeecCCchhceEE
Confidence            9999999999999999999999987   8999999999999999999999999999999876                  


Q ss_pred             ---CCccEEEEEcCCCeEEEEecCCCceeeEEeccCCceeEEEEEEecCCCeeEEccccceEEEEEcCCCCeEEEeeecC
Q 042146          174 ---PNGKFILVGTLDNTLRLWNYSTRKILKTYSGYTNSKYCISSTFSVTNGKYIVSHRDPVISVASHPAKNIIASGALDN  250 (262)
Q Consensus       174 ---~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~d~  250 (262)
                         -....|++-+.+|.|.+++...+.++..+.+                      |...|++++.+|++++|++|+  .
T Consensus       285 G~lWqkd~lItVSl~G~in~ln~~d~~~~~~i~G----------------------HnK~ITaLtv~~d~~~i~Sgs--y  340 (603)
T KOG0318|consen  285 GCLWQKDHLITVSLSGTINYLNPSDPSVLKVISG----------------------HNKSITALTVSPDGKTIYSGS--Y  340 (603)
T ss_pred             EEEEeCCeEEEEEcCcEEEEecccCCChhheecc----------------------cccceeEEEEcCCCCEEEeec--c
Confidence               1356788999999999999999988888887                      999999999999999999999  9


Q ss_pred             CCcEEEEeecc
Q 042146          251 DRTMKIWTQEK  261 (262)
Q Consensus       251 d~~i~iw~~~~  261 (262)
                      ||.|.-|+...
T Consensus       341 DG~I~~W~~~~  351 (603)
T KOG0318|consen  341 DGHINSWDSGS  351 (603)
T ss_pred             CceEEEEecCC
Confidence            99999999854

>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]

Probab=100.00  E-value=1.6e-33  Score=205.86  Aligned_cols=151  Identities=31%  Similarity=0.585  Sum_probs=135.2

Q ss_pred             eEEEEecCCCccceecccCCcceEEEEEeCCCCEEEeecCCCeEEEEECCCCe---eeeeeecCCCCeeeEEEccCCCEE
Q 042146           81 TIRLWDVPTATSLKTLIGHTNYVFCINFNPQSNRIVSDTFNETIRIWDIKTGK---CLKVLPAHSDPVTAIDFNRDGTMI  157 (262)
Q Consensus        81 ~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~---~~~~~~~~~~~v~~~~~~~~~~~l  157 (262)
                      +|++||.++++++.++.+|...|..+.|+  ..++++++.|.++.+||+....   +.+.+.+|...|+.+.|+  .+++
T Consensus       258 TvrvWDv~tge~l~tlihHceaVLhlrf~--ng~mvtcSkDrsiaVWdm~sps~it~rrVLvGHrAaVNvVdfd--~kyI  333 (499)
T KOG0281|consen  258 TVRVWDVNTGEPLNTLIHHCEAVLHLRFS--NGYMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDFD--DKYI  333 (499)
T ss_pred             eEEEEeccCCchhhHHhhhcceeEEEEEe--CCEEEEecCCceeEEEeccCchHHHHHHHHhhhhhheeeeccc--cceE
Confidence            55666888999999999999999999997  6789999999999999997653   345567999999999997  5699


Q ss_pred             EEEeCCCeEEEEeCCC------------------CCccEEEEEcCCCeEEEEecCCCceeeEEeccCCceeEEEEEEecC
Q 042146          158 VTSSYDGLYRILDAST------------------PNGKFILVGTLDNTLRLWNYSTRKILKTYSGYTNSKYCISSTFSVT  219 (262)
Q Consensus       158 ~~~~~dg~i~~~d~~~------------------~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~  219 (262)
                      ++++.|.+|++|++.+                  -.++++++|+.|.+|++||++.|.+++.+++               
T Consensus       334 VsASgDRTikvW~~st~efvRtl~gHkRGIAClQYr~rlvVSGSSDntIRlwdi~~G~cLRvLeG---------------  398 (499)
T KOG0281|consen  334 VSASGDRTIKVWSTSTCEFVRTLNGHKRGIACLQYRDRLVVSGSSDNTIRLWDIECGACLRVLEG---------------  398 (499)
T ss_pred             EEecCCceEEEEeccceeeehhhhcccccceehhccCeEEEecCCCceEEEEeccccHHHHHHhc---------------
Confidence            9999999999999887                  5789999999999999999999999999998               


Q ss_pred             CCeeEEccccceEEEEEcCCCCeEEEeeecCCCcEEEEeecc
Q 042146          220 NGKYIVSHRDPVISVASHPAKNIIASGALDNDRTMKIWTQEK  261 (262)
Q Consensus       220 ~~~~~~~~~~~v~~~~~~p~~~~l~~~~~d~d~~i~iw~~~~  261 (262)
                             |++-|.++.|.  .+.+++|+  .||+|++||+..
T Consensus       399 -------HEeLvRciRFd--~krIVSGa--YDGkikvWdl~a  429 (499)
T KOG0281|consen  399 -------HEELVRCIRFD--NKRIVSGA--YDGKIKVWDLQA  429 (499)
T ss_pred             -------hHHhhhheeec--Cceeeecc--ccceEEEEeccc
Confidence                   88899999997  67799999  899999999863

>PTZ00421 coronin; Provisional

Probab=100.00  E-value=2.1e-31  Score=214.59  Aligned_cols=194  Identities=21%  Similarity=0.361  Sum_probs=156.3

Q ss_pred             ecccCcCceEEEEEcc-CCCeEEEecCCCeEEEeecCCCCCCCCCCCCCCccccCCccccccceeEEEEecCCCccceec
Q 042146           18 TLNGHLRAVSYVKFSH-DGRLLTSSSAEKTLLTYSLSSISNFDSTPPSPLQKFTGHEQGISDLATIRLWDVPTATSLKTL   96 (262)
Q Consensus        18 ~~~~h~~~v~~~~~~~-~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~i~v~d~~~~~~~~~~   96 (262)
                      .+.+|.++|++++|+| ++++|++|+.|++|++||+......                            .....++..+
T Consensus        70 ~l~GH~~~V~~v~fsP~d~~~LaSgS~DgtIkIWdi~~~~~~----------------------------~~~~~~l~~L  121 (493)
T PTZ00421         70 ILLGQEGPIIDVAFNPFDPQKLFTASEDGTIMGWGIPEEGLT----------------------------QNISDPIVHL  121 (493)
T ss_pred             eEeCCCCCEEEEEEcCCCCCEEEEEeCCCEEEEEecCCCccc----------------------------cccCcceEEe
Confidence            4679999999999999 8899999999999999987542110                            0012345667


Q ss_pred             ccCCcceEEEEEeCCC-CEEEeecCCCeEEEEECCCCeeeeeeecCCCCeeeEEEccCCCEEEEEeCCCeEEEEeCCC--
Q 042146           97 IGHTNYVFCINFNPQS-NRIVSDTFNETIRIWDIKTGKCLKVLPAHSDPVTAIDFNRDGTMIVTSSYDGLYRILDAST--  173 (262)
Q Consensus        97 ~~~~~~v~~~~~~~~~-~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~d~~~--  173 (262)
                      .+|...|.+++|+|++ ++|++++.|++|++||+++++.+..+..|...|.+++|+|++.+|++++.|++|++||+++  
T Consensus       122 ~gH~~~V~~l~f~P~~~~iLaSgs~DgtVrIWDl~tg~~~~~l~~h~~~V~sla~spdG~lLatgs~Dg~IrIwD~rsg~  201 (493)
T PTZ00421        122 QGHTKKVGIVSFHPSAMNVLASAGADMVVNVWDVERGKAVEVIKCHSDQITSLEWNLDGSLLCTTSKDKKLNIIDPRDGT  201 (493)
T ss_pred             cCCCCcEEEEEeCcCCCCEEEEEeCCCEEEEEECCCCeEEEEEcCCCCceEEEEEECCCCEEEEecCCCEEEEEECCCCc
Confidence            8899999999999975 6899999999999999999999999999999999999999999999999999999999986  


Q ss_pred             -------------------CCccEEEEEc----CCCeEEEEecCCCce-eeEEeccCCceeEEEEEEecCCCeeEEcccc
Q 042146          174 -------------------PNGKFILVGT----LDNTLRLWNYSTRKI-LKTYSGYTNSKYCISSTFSVTNGKYIVSHRD  229 (262)
Q Consensus       174 -------------------~~~~~l~~~~----~dg~i~i~d~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  229 (262)
                                         +++..+++++    .|+.|++||+++... +.....+                     ...
T Consensus       202 ~v~tl~~H~~~~~~~~~w~~~~~~ivt~G~s~s~Dr~VklWDlr~~~~p~~~~~~d---------------------~~~  260 (493)
T PTZ00421        202 IVSSVEAHASAKSQRCLWAKRKDLIITLGCSKSQQRQIMLWDTRKMASPYSTVDLD---------------------QSS  260 (493)
T ss_pred             EEEEEecCCCCcceEEEEcCCCCeEEEEecCCCCCCeEEEEeCCCCCCceeEeccC---------------------CCC
Confidence                               2334555543    478999999987543 2222210                     234


Q ss_pred             ceEEEEEcCCCCeEEEeeecCCCcEEEEeecc
Q 042146          230 PVISVASHPAKNIIASGALDNDRTMKIWTQEK  261 (262)
Q Consensus       230 ~v~~~~~~p~~~~l~~~~~d~d~~i~iw~~~~  261 (262)
                      .+....|+|++.+|++++. .|+.|++|++.+
T Consensus       261 ~~~~~~~d~d~~~L~lggk-gDg~Iriwdl~~  291 (493)
T PTZ00421        261 ALFIPFFDEDTNLLYIGSK-GEGNIRCFELMN  291 (493)
T ss_pred             ceEEEEEcCCCCEEEEEEe-CCCeEEEEEeeC
Confidence            5666789999999998873 389999999975

>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]

Probab=100.00  E-value=2e-33  Score=208.79  Aligned_cols=206  Identities=25%  Similarity=0.469  Sum_probs=176.1

Q ss_pred             CcCceEEEEEccCCCeEEEecCCCeEEEeecCCCCCCCCCCCCCCccccCCccccccce---------------eEEEEe
Q 042146           22 HLRAVSYVKFSHDGRLLTSSSAEKTLLTYSLSSISNFDSTPPSPLQKFTGHEQGISDLA---------------TIRLWD   86 (262)
Q Consensus        22 h~~~v~~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~---------------~i~v~d   86 (262)
                      -+.+|..+.|.|+|+.|++|+..|-+.+|+...        ......+..|...|..+.               .|++|+
T Consensus        95 vkc~V~~v~WtPeGRRLltgs~SGEFtLWNg~~--------fnFEtilQaHDs~Vr~m~ws~~g~wmiSgD~gG~iKyWq  166 (464)
T KOG0284|consen   95 VKCPVNVVRWTPEGRRLLTGSQSGEFTLWNGTS--------FNFETILQAHDSPVRTMKWSHNGTWMISGDKGGMIKYWQ  166 (464)
T ss_pred             cccceeeEEEcCCCceeEeecccccEEEecCce--------eeHHHHhhhhcccceeEEEccCCCEEEEcCCCceEEecc
Confidence            456899999999999999999999999997633        222223344444444333               899999


Q ss_pred             cCCCccceeccc-CCcceEEEEEeCCCCEEEeecCCCeEEEEECCCCeeeeeeecCCCCeeeEEEccCCCEEEEEeCCCe
Q 042146           87 VPTATSLKTLIG-HTNYVFCINFNPQSNRIVSDTFNETIRIWDIKTGKCLKVLPAHSDPVTAIDFNRDGTMIVTSSYDGL  165 (262)
Q Consensus        87 ~~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~  165 (262)
                      .... .++.++. |...|.+++|+|+...+++++.||+|+|||....+..+.+.+|.-.|.+++|+|...++++++.|..
T Consensus       167 pnmn-nVk~~~ahh~eaIRdlafSpnDskF~t~SdDg~ikiWdf~~~kee~vL~GHgwdVksvdWHP~kgLiasgskDnl  245 (464)
T KOG0284|consen  167 PNMN-NVKIIQAHHAEAIRDLAFSPNDSKFLTCSDDGTIKIWDFRMPKEERVLRGHGWDVKSVDWHPTKGLIASGSKDNL  245 (464)
T ss_pred             cchh-hhHHhhHhhhhhhheeccCCCCceeEEecCCCeEEEEeccCCchhheeccCCCCcceeccCCccceeEEccCCce
Confidence            8644 4444444 4489999999999999999999999999999999988999999999999999999999999999999


Q ss_pred             EEEEeCCC--------------------CCccEEEEEcCCCeEEEEecCCCceeeEEeccCCceeEEEEEEecCCCeeEE
Q 042146          166 YRILDAST--------------------PNGKFILVGTLDNTLRLWNYSTRKILKTYSGYTNSKYCISSTFSVTNGKYIV  225 (262)
Q Consensus       166 i~~~d~~~--------------------~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  225 (262)
                      |++||.++                    +++++|++++.|..++++|+++.+.+..+++                     
T Consensus       246 VKlWDprSg~cl~tlh~HKntVl~~~f~~n~N~Llt~skD~~~kv~DiR~mkEl~~~r~---------------------  304 (464)
T KOG0284|consen  246 VKLWDPRSGSCLATLHGHKNTVLAVKFNPNGNWLLTGSKDQSCKVFDIRTMKELFTYRG---------------------  304 (464)
T ss_pred             eEeecCCCcchhhhhhhccceEEEEEEcCCCCeeEEccCCceEEEEehhHhHHHHHhhc---------------------
Confidence            99999998                    7889999999999999999999899999988                     


Q ss_pred             ccccceEEEEEcCC-CCeEEEeeecCCCcEEEEeec
Q 042146          226 SHRDPVISVASHPA-KNIIASGALDNDRTMKIWTQE  260 (262)
Q Consensus       226 ~~~~~v~~~~~~p~-~~~l~~~~~d~d~~i~iw~~~  260 (262)
                       |+..|+++.|+|- ..+|.+|+  .||.|..|.+.
T Consensus       305 -Hkkdv~~~~WhP~~~~lftsgg--~Dgsvvh~~v~  337 (464)
T KOG0284|consen  305 -HKKDVTSLTWHPLNESLFTSGG--SDGSVVHWVVG  337 (464)
T ss_pred             -chhhheeeccccccccceeecc--CCCceEEEecc
Confidence             9999999999995 55777788  79999999875

>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto

Probab=100.00  E-value=6.2e-31  Score=201.10  Aligned_cols=232  Identities=34%  Similarity=0.600  Sum_probs=191.5

Q ss_pred             CCCceeeec--ccccceecccCcCceEEEEEccCCCeEEEecCCCeEEEeecCCCCCCCCCC--CCCCccccCCcc-cc-
Q 042146            3 SDRSLESFR--PYTLTQTLNGHLRAVSYVKFSHDGRLLTSSSAEKTLLTYSLSSISNFDSTP--PSPLQKFTGHEQ-GI-   76 (262)
Q Consensus         3 ~d~~i~~~~--~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~--~~~~~~~~~~~~-~v-   76 (262)
                      .|+.+..|+  ..+....+..|...+..+.|+|++++|++++.||.|++|++..........  ...+..+..... .+ 
T Consensus        29 ~~g~i~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~  108 (289)
T cd00200          29 GDGTIKVWDLETGELLRTLKGHTGPVRDVAASADGTYLASGSSDKTIRLWDLETGECVRTLTGHTSYVSSVAFSPDGRIL  108 (289)
T ss_pred             cCcEEEEEEeeCCCcEEEEecCCcceeEEEECCCCCEEEEEcCCCeEEEEEcCcccceEEEeccCCcEEEEEEcCCCCEE
Confidence            477777775  445677888999999999999999999999999999999997642211111  111111111111 11 


Q ss_pred             --cc-ceeEEEEecCCCccceecccCCcceEEEEEeCCCCEEEeecCCCeEEEEECCCCeeeeeeecCCCCeeeEEEccC
Q 042146           77 --SD-LATIRLWDVPTATSLKTLIGHTNYVFCINFNPQSNRIVSDTFNETIRIWDIKTGKCLKVLPAHSDPVTAIDFNRD  153 (262)
Q Consensus        77 --~~-~~~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~  153 (262)
                        .. .+.+.+||+.+++....+..|...+.+++|+|++.++++++.++.|++||+++++.+..+..|...+.++.|+|+
T Consensus       109 ~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~  188 (289)
T cd00200         109 SSSSRDKTIKVWDVETGKCLTTLRGHTDWVNSVAFSPDGTFVASSSQDGTIKLWDLRTGKCVATLTGHTGEVNSVAFSPD  188 (289)
T ss_pred             EEecCCCeEEEEECCCcEEEEEeccCCCcEEEEEEcCcCCEEEEEcCCCcEEEEEccccccceeEecCccccceEEECCC
Confidence              11 348999999988888888889999999999999999999888999999999999888888889999999999999


Q ss_pred             CCEEEEEeCCCeEEEEeCCC--------------------CCccEEEEEcCCCeEEEEecCCCceeeEEeccCCceeEEE
Q 042146          154 GTMIVTSSYDGLYRILDAST--------------------PNGKFILVGTLDNTLRLWNYSTRKILKTYSGYTNSKYCIS  213 (262)
Q Consensus       154 ~~~l~~~~~dg~i~~~d~~~--------------------~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~  213 (262)
                      ++.+++++.++.+++||++.                    +++.++++++.+|.|++||+.+++....+..         
T Consensus       189 ~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~---------  259 (289)
T cd00200         189 GEKLLSSSSDGTIKLWDLSTGKCLGTLRGHENGVNSVAFSPDGYLLASGSEDGTIRVWDLRTGECVQTLSG---------  259 (289)
T ss_pred             cCEEEEecCCCcEEEEECCCCceecchhhcCCceEEEEEcCCCcEEEEEcCCCcEEEEEcCCceeEEEccc---------
Confidence            99999999999999999874                    5677888888899999999998888888775         


Q ss_pred             EEEecCCCeeEEccccceEEEEEcCCCCeEEEeeecCCCcEEEEe
Q 042146          214 STFSVTNGKYIVSHRDPVISVASHPAKNIIASGALDNDRTMKIWT  258 (262)
Q Consensus       214 ~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~d~d~~i~iw~  258 (262)
                                   |...|.+++|+|+++.|++++  .||.|++|+
T Consensus       260 -------------~~~~i~~~~~~~~~~~l~~~~--~d~~i~iw~  289 (289)
T cd00200         260 -------------HTNSVTSLAWSPDGKRLASGS--ADGTIRIWD  289 (289)
T ss_pred             -------------cCCcEEEEEECCCCCEEEEec--CCCeEEecC
Confidence                         788999999999999999999  899999996

>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto

Probab=100.00  E-value=6.3e-31  Score=201.04  Aligned_cols=222  Identities=37%  Similarity=0.665  Sum_probs=183.4

Q ss_pred             ceecccCcCceEEEEEccCCCeEEEecCCCeEEEeecCCCCCCCCC--CCCCCcc--ccCCcccc---ccceeEEEEecC
Q 042146           16 TQTLNGHLRAVSYVKFSHDGRLLTSSSAEKTLLTYSLSSISNFDST--PPSPLQK--FTGHEQGI---SDLATIRLWDVP   88 (262)
Q Consensus        16 ~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~--~~~~~~~--~~~~~~~v---~~~~~i~v~d~~   88 (262)
                      ++++++|.++|++++|+|++++|++++.||.+++|++.........  .......  +......+   ...+.|++|++.
T Consensus         2 ~~~~~~h~~~i~~~~~~~~~~~l~~~~~~g~i~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~~~~   81 (289)
T cd00200           2 RRTLKGHTGGVTCVAFSPDGKLLATGSGDGTIKVWDLETGELLRTLKGHTGPVRDVAASADGTYLASGSSDKTIRLWDLE   81 (289)
T ss_pred             chHhcccCCCEEEEEEcCCCCEEEEeecCcEEEEEEeeCCCcEEEEecCCcceeEEEECCCCCEEEEEcCCCeEEEEEcC
Confidence            4577899999999999999999999999999999998764321111  1111111  11111111   123489999999


Q ss_pred             CCccceecccCCcceEEEEEeCCCCEEEeecCCCeEEEEECCCCeeeeeeecCCCCeeeEEEccCCCEEEEEeCCCeEEE
Q 042146           89 TATSLKTLIGHTNYVFCINFNPQSNRIVSDTFNETIRIWDIKTGKCLKVLPAHSDPVTAIDFNRDGTMIVTSSYDGLYRI  168 (262)
Q Consensus        89 ~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~  168 (262)
                      +++.+..+..|...+.++.|+|+++++++++.+|.|.+||+++++....+..|...+.+++|+|++.++++++.++.+++
T Consensus        82 ~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i  161 (289)
T cd00200          82 TGECVRTLTGHTSYVSSVAFSPDGRILSSSSRDKTIKVWDVETGKCLTTLRGHTDWVNSVAFSPDGTFVASSSQDGTIKL  161 (289)
T ss_pred             cccceEEEeccCCcEEEEEEcCCCCEEEEecCCCeEEEEECCCcEEEEEeccCCCcEEEEEEcCcCCEEEEEcCCCcEEE
Confidence            88888888889999999999999889999888999999999989888888889999999999999888888888999999


Q ss_pred             EeCCC--------------------CCccEEEEEcCCCeEEEEecCCCceeeEEeccCCceeEEEEEEecCCCeeEEccc
Q 042146          169 LDAST--------------------PNGKFILVGTLDNTLRLWNYSTRKILKTYSGYTNSKYCISSTFSVTNGKYIVSHR  228 (262)
Q Consensus       169 ~d~~~--------------------~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  228 (262)
                      ||++.                    ++++.+++++.++.|++||++.++.+..+..                      |.
T Consensus       162 ~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~----------------------~~  219 (289)
T cd00200         162 WDLRTGKCVATLTGHTGEVNSVAFSPDGEKLLSSSSDGTIKLWDLSTGKCLGTLRG----------------------HE  219 (289)
T ss_pred             EEccccccceeEecCccccceEEECCCcCEEEEecCCCcEEEEECCCCceecchhh----------------------cC
Confidence            99874                    6777899999999999999999888887755                      77


Q ss_pred             cceEEEEEcCCCCeEEEeeecCCCcEEEEeecc
Q 042146          229 DPVISVASHPAKNIIASGALDNDRTMKIWTQEK  261 (262)
Q Consensus       229 ~~v~~~~~~p~~~~l~~~~~d~d~~i~iw~~~~  261 (262)
                      ..+.++.|+|++.++++++  .||.|++|++..
T Consensus       220 ~~i~~~~~~~~~~~~~~~~--~~~~i~i~~~~~  250 (289)
T cd00200         220 NGVNSVAFSPDGYLLASGS--EDGTIRVWDLRT  250 (289)
T ss_pred             CceEEEEEcCCCcEEEEEc--CCCcEEEEEcCC
Confidence            8999999999988888887  799999999863

>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=6e-32  Score=218.35  Aligned_cols=213  Identities=27%  Similarity=0.504  Sum_probs=186.7

Q ss_pred             eecccCcCceEEEEEccCCCeEEEecCCCeEEEeecCCCCCCCCCCCCCCccccCCccccccce---------------e
Q 042146           17 QTLNGHLRAVSYVKFSHDGRLLTSSSAEKTLLTYSLSSISNFDSTPPSPLQKFTGHEQGISDLA---------------T   81 (262)
Q Consensus        17 ~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~---------------~   81 (262)
                      ..++..+..|..++|+|...+++++-..|.|++||..-        ...+..|..|.++|..+.               .
T Consensus         3 tkfEskSsRvKglsFHP~rPwILtslHsG~IQlWDYRM--------~tli~rFdeHdGpVRgv~FH~~qplFVSGGDDyk   74 (1202)
T KOG0292|consen    3 TKFESKSSRVKGLSFHPKRPWILTSLHSGVIQLWDYRM--------GTLIDRFDEHDGPVRGVDFHPTQPLFVSGGDDYK   74 (1202)
T ss_pred             chhhcccccccceecCCCCCEEEEeecCceeeeehhhh--------hhHHhhhhccCCccceeeecCCCCeEEecCCccE
Confidence            34556678899999999999999999999999998754        333445555555555444               8


Q ss_pred             EEEEecCCCccceecccCCcceEEEEEeCCCCEEEeecCCCeEEEEECCCCeeeeeeecCCCCeeeEEEccCCCEEEEEe
Q 042146           82 IRLWDVPTATSLKTLIGHTNYVFCINFNPQSNRIVSDTFNETIRIWDIKTGKCLKVLPAHSDPVTAIDFNRDGTMIVTSS  161 (262)
Q Consensus        82 i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~  161 (262)
                      |+||+..+.+++.++.+|-+.|..+.||+..++++++|.|.+|+||+..+++++..+.+|...|.|..|+|....++++|
T Consensus        75 IkVWnYk~rrclftL~GHlDYVRt~~FHheyPWIlSASDDQTIrIWNwqsr~~iavltGHnHYVMcAqFhptEDlIVSaS  154 (1202)
T KOG0292|consen   75 IKVWNYKTRRCLFTLLGHLDYVRTVFFHHEYPWILSASDDQTIRIWNWQSRKCIAVLTGHNHYVMCAQFHPTEDLIVSAS  154 (1202)
T ss_pred             EEEEecccceehhhhccccceeEEeeccCCCceEEEccCCCeEEEEeccCCceEEEEecCceEEEeeccCCccceEEEec
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCeEEEEeCCC-------------------------------------------------CCccEEEEEcCCCeEEEEe
Q 042146          162 YDGLYRILDAST-------------------------------------------------PNGKFILVGTLDNTLRLWN  192 (262)
Q Consensus       162 ~dg~i~~~d~~~-------------------------------------------------~~~~~l~~~~~dg~i~i~d  192 (262)
                      .|.+|++||+..                                                 |.-+.+++|+.|..|++|.
T Consensus       155 LDQTVRVWDisGLRkk~~~pg~~e~~~~~~~~~~dLfg~~DaVVK~VLEGHDRGVNwaAfhpTlpliVSG~DDRqVKlWr  234 (1202)
T KOG0292|consen  155 LDQTVRVWDISGLRKKNKAPGSLEDQMRGQQGNSDLFGQTDAVVKHVLEGHDRGVNWAAFHPTLPLIVSGADDRQVKLWR  234 (1202)
T ss_pred             ccceEEEEeecchhccCCCCCCchhhhhccccchhhcCCcCeeeeeeecccccccceEEecCCcceEEecCCcceeeEEE
Confidence            999999999765                                                 5558899999999999998


Q ss_pred             cCCCc--eeeEEeccCCceeEEEEEEecCCCeeEEccccceEEEEEcCCCCeEEEeeecCCCcEEEEeecc
Q 042146          193 YSTRK--ILKTYSGYTNSKYCISSTFSVTNGKYIVSHRDPVISVASHPAKNIIASGALDNDRTMKIWTQEK  261 (262)
Q Consensus       193 ~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~d~d~~i~iw~~~~  261 (262)
                      +...+  .+.+..+                      |...|.++-|+|...++++.|  +|++|+|||+++
T Consensus       235 mnetKaWEvDtcrg----------------------H~nnVssvlfhp~q~lIlSns--EDksirVwDm~k  281 (1202)
T KOG0292|consen  235 MNETKAWEVDTCRG----------------------HYNNVSSVLFHPHQDLILSNS--EDKSIRVWDMTK  281 (1202)
T ss_pred             eccccceeehhhhc----------------------ccCCcceEEecCccceeEecC--CCccEEEEeccc
Confidence            87543  2333444                      899999999999999999999  999999999975

>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]

Probab=100.00  E-value=8.3e-31  Score=185.14  Aligned_cols=230  Identities=26%  Similarity=0.382  Sum_probs=195.3

Q ss_pred             ecccCcCceEEEEEccCCCeEEEecCCCeEEEeecCCCCCCCCCCCCCCccccCCccccccce---------------eE
Q 042146           18 TLNGHLRAVSYVKFSHDGRLLTSSSAEKTLLTYSLSSISNFDSTPPSPLQKFTGHEQGISDLA---------------TI   82 (262)
Q Consensus        18 ~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~---------------~i   82 (262)
                      .+++|+.+++.+.|+.+|.+|.+++.|.+..+|        ....+..+-.+.+|...|.++.               ++
T Consensus         5 ~l~GHERplTqiKyN~eGDLlFscaKD~~~~vw--------~s~nGerlGty~GHtGavW~~Did~~s~~liTGSAD~t~   76 (327)
T KOG0643|consen    5 LLQGHERPLTQIKYNREGDLLFSCAKDSTPTVW--------YSLNGERLGTYDGHTGAVWCCDIDWDSKHLITGSADQTA   76 (327)
T ss_pred             ccccCccccceEEecCCCcEEEEecCCCCceEE--------EecCCceeeeecCCCceEEEEEecCCcceeeecccccee
Confidence            468999999999999999999999999999999        6677778888888888876655               89


Q ss_pred             EEEecCCCccceecccCCcceEEEEEeCCCCEEEeecC-----CCeEEEEECC-------CCeeeeeeecCCCCeeeEEE
Q 042146           83 RLWDVPTATSLKTLIGHTNYVFCINFNPQSNRIVSDTF-----NETIRIWDIK-------TGKCLKVLPAHSDPVTAIDF  150 (262)
Q Consensus        83 ~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-----dg~i~vwd~~-------~~~~~~~~~~~~~~v~~~~~  150 (262)
                      ++||+++|+.+.+++ ...+|..+.|+++|++++....     .+.|.++|++       ...+...+..+.+.++.+-|
T Consensus        77 kLWDv~tGk~la~~k-~~~~Vk~~~F~~~gn~~l~~tD~~mg~~~~v~~fdi~~~~~~~~s~ep~~kI~t~~skit~a~W  155 (327)
T KOG0643|consen   77 KLWDVETGKQLATWK-TNSPVKRVDFSFGGNLILASTDKQMGYTCFVSVFDIRDDSSDIDSEEPYLKIPTPDSKITSALW  155 (327)
T ss_pred             EEEEcCCCcEEEEee-cCCeeEEEeeccCCcEEEEEehhhcCcceEEEEEEccCChhhhcccCceEEecCCccceeeeee
Confidence            999999999999887 5678999999999999887654     4679999998       44567788888899999999


Q ss_pred             ccCCCEEEEEeCCCeEEEEeCCC---------------------CCccEEEEEcCCCeEEEEecCCCceeeEEeccCCce
Q 042146          151 NRDGTMIVTSSYDGLYRILDAST---------------------PNGKFILVGTLDNTLRLWNYSTRKILKTYSGYTNSK  209 (262)
Q Consensus       151 ~~~~~~l~~~~~dg~i~~~d~~~---------------------~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~  209 (262)
                      .|-+..+++|..||.|..||+++                     ++..++++++.|.+-++||.++.++++++....+ +
T Consensus       156 g~l~~~ii~Ghe~G~is~~da~~g~~~v~s~~~h~~~Ind~q~s~d~T~FiT~s~Dttakl~D~~tl~v~Kty~te~P-v  234 (327)
T KOG0643|consen  156 GPLGETIIAGHEDGSISIYDARTGKELVDSDEEHSSKINDLQFSRDRTYFITGSKDTTAKLVDVRTLEVLKTYTTERP-V  234 (327)
T ss_pred             cccCCEEEEecCCCcEEEEEcccCceeeechhhhccccccccccCCcceEEecccCccceeeeccceeeEEEeeeccc-c
Confidence            99999999999999999999986                     7899999999999999999999999988875332 2


Q ss_pred             eEEEEEEecCCCeeEEc------------------------------------cccceEEEEEcCCCCeEEEeeecCCCc
Q 042146          210 YCISSTFSVTNGKYIVS------------------------------------HRDPVISVASHPAKNIIASGALDNDRT  253 (262)
Q Consensus       210 ~~~~~~~~~~~~~~~~~------------------------------------~~~~v~~~~~~p~~~~l~~~~~d~d~~  253 (262)
                      .+  .++++....++.+                                    |-++|++++|||+|+..++|+  +||.
T Consensus       235 N~--aaisP~~d~VilgGGqeA~dVTTT~~r~GKFEArFyh~i~eEEigrvkGHFGPINsvAfhPdGksYsSGG--EDG~  310 (327)
T KOG0643|consen  235 NT--AAISPLLDHVILGGGQEAMDVTTTSTRAGKFEARFYHLIFEEEIGRVKGHFGPINSVAFHPDGKSYSSGG--EDGY  310 (327)
T ss_pred             cc--eecccccceEEecCCceeeeeeeecccccchhhhHHHHHHHHHhccccccccCcceeEECCCCcccccCC--CCce
Confidence            22  2233333333332                                    999999999999999999999  9999


Q ss_pred             EEEEeecc
Q 042146          254 MKIWTQEK  261 (262)
Q Consensus       254 i~iw~~~~  261 (262)
                      |++.-+++
T Consensus       311 VR~h~Fd~  318 (327)
T KOG0643|consen  311 VRLHHFDS  318 (327)
T ss_pred             EEEEEecc
Confidence            99976654

>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]

Probab=100.00  E-value=1.8e-32  Score=191.93  Aligned_cols=215  Identities=25%  Similarity=0.434  Sum_probs=172.9

Q ss_pred             cceecccCcCceEEEEEcc---CCCeEEEecCCCeEEEeecCCCCCCCCCCCCCCccccCCccccccce-----------
Q 042146           15 LTQTLNGHLRAVSYVKFSH---DGRLLTSSSAEKTLLTYSLSSISNFDSTPPSPLQKFTGHEQGISDLA-----------   80 (262)
Q Consensus        15 ~~~~~~~h~~~v~~~~~~~---~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~-----------   80 (262)
                      ...+-.+|+.+|-.++|||   +|-+|++++.|+.=.+-        ....+.-+-.+.+|...+....           
T Consensus         6 ~pl~c~ghtrpvvdl~~s~itp~g~flisa~kd~~pmlr--------~g~tgdwigtfeghkgavw~~~l~~na~~aasa   77 (334)
T KOG0278|consen    6 TPLTCHGHTRPVVDLAFSPITPDGYFLISASKDGKPMLR--------NGDTGDWIGTFEGHKGAVWSATLNKNATRAASA   77 (334)
T ss_pred             CceEEcCCCcceeEEeccCCCCCceEEEEeccCCCchhc--------cCCCCCcEEeeeccCcceeeeecCchhhhhhhh
Confidence            3456679999999999986   78899999999875544        3445556667778877764433           


Q ss_pred             ----eEEEEecCCCccceecccCCcceEEEEEeCCCCEEEeecCCCeEEEEECCCC-eeeeeeecCCCCeeeEEEccCCC
Q 042146           81 ----TIRLWDVPTATSLKTLIGHTNYVFCINFNPQSNRIVSDTFNETIRIWDIKTG-KCLKVLPAHSDPVTAIDFNRDGT  155 (262)
Q Consensus        81 ----~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~-~~~~~~~~~~~~v~~~~~~~~~~  155 (262)
                          +-++||.-++..+..+. |+..|.+++|+.|.++|++|+.+..++|||++.. .+..++.+|.+.|..+.|....+
T Consensus        78 aadftakvw~a~tgdelhsf~-hkhivk~~af~~ds~~lltgg~ekllrvfdln~p~App~E~~ghtg~Ir~v~wc~eD~  156 (334)
T KOG0278|consen   78 AADFTAKVWDAVTGDELHSFE-HKHIVKAVAFSQDSNYLLTGGQEKLLRVFDLNRPKAPPKEISGHTGGIRTVLWCHEDK  156 (334)
T ss_pred             cccchhhhhhhhhhhhhhhhh-hhheeeeEEecccchhhhccchHHHhhhhhccCCCCCchhhcCCCCcceeEEEeccCc
Confidence                78899999999999886 8999999999999999999999999999999764 45677889999999999999888


Q ss_pred             EEEEEeCCCeEEEEeCCC-----------------------------------------------------------CCc
Q 042146          156 MIVTSSYDGLYRILDAST-----------------------------------------------------------PNG  176 (262)
Q Consensus       156 ~l~~~~~dg~i~~~d~~~-----------------------------------------------------------~~~  176 (262)
                      .+++++.|++|++||.++                                                           |+.
T Consensus       157 ~iLSSadd~tVRLWD~rTgt~v~sL~~~s~VtSlEvs~dG~ilTia~gssV~Fwdaksf~~lKs~k~P~nV~SASL~P~k  236 (334)
T KOG0278|consen  157 CILSSADDKTVRLWDHRTGTEVQSLEFNSPVTSLEVSQDGRILTIAYGSSVKFWDAKSFGLLKSYKMPCNVESASLHPKK  236 (334)
T ss_pred             eEEeeccCCceEEEEeccCcEEEEEecCCCCcceeeccCCCEEEEecCceeEEeccccccceeeccCccccccccccCCC
Confidence            999999999999999987                                                           344


Q ss_pred             cEEEEEcCCCeEEEEecCCCceeeEEeccCCceeEEEEEEecCCCeeEEccccceEEEEEcCCCCeEEEeeecCCCcEEE
Q 042146          177 KFILVGTLDNTLRLWNYSTRKILKTYSGYTNSKYCISSTFSVTNGKYIVSHRDPVISVASHPAKNIIASGALDNDRTMKI  256 (262)
Q Consensus       177 ~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~d~d~~i~i  256 (262)
                      ..+++|++|+.++.||..+++.+..+                     ..+|.++|.|+.|+|+|...++||  +||+|+|
T Consensus       237 ~~fVaGged~~~~kfDy~TgeEi~~~---------------------nkgh~gpVhcVrFSPdGE~yAsGS--EDGTirl  293 (334)
T KOG0278|consen  237 EFFVAGGEDFKVYKFDYNTGEEIGSY---------------------NKGHFGPVHCVRFSPDGELYASGS--EDGTIRL  293 (334)
T ss_pred             ceEEecCcceEEEEEeccCCceeeec---------------------ccCCCCceEEEEECCCCceeeccC--CCceEEE
Confidence            44445555555555555544444443                     123899999999999999999999  9999999


Q ss_pred             Eeecc
Q 042146          257 WTQEK  261 (262)
Q Consensus       257 w~~~~  261 (262)
                      |.+..
T Consensus       294 WQt~~  298 (334)
T KOG0278|consen  294 WQTTP  298 (334)
T ss_pred             EEecC
Confidence            98753

>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]

Probab=100.00  E-value=7.5e-31  Score=211.88  Aligned_cols=224  Identities=29%  Similarity=0.505  Sum_probs=189.8

Q ss_pred             CCCCceeeecc--ccccee-cccCcCceEEEEEccCCCeEEEecCCCeEEEeecCCCCCCCCCCCCCCccccCCccccc-
Q 042146            2 SSDRSLESFRP--YTLTQT-LNGHLRAVSYVKFSHDGRLLTSSSAEKTLLTYSLSSISNFDSTPPSPLQKFTGHEQGIS-   77 (262)
Q Consensus         2 s~d~~i~~~~~--~~~~~~-~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~-   77 (262)
                      +.|++|..|+.  ...+.. +.+|.+.|.++++..-+.+|++|+.|.++++||+...        .....+.+|...+. 
T Consensus       225 s~~~tl~~~~~~~~~~i~~~l~GH~g~V~~l~~~~~~~~lvsgS~D~t~rvWd~~sg--------~C~~~l~gh~stv~~  296 (537)
T KOG0274|consen  225 SDDSTLHLWDLNNGYLILTRLVGHFGGVWGLAFPSGGDKLVSGSTDKTERVWDCSTG--------ECTHSLQGHTSSVRC  296 (537)
T ss_pred             CCCceeEEeecccceEEEeeccCCCCCceeEEEecCCCEEEEEecCCcEEeEecCCC--------cEEEEecCCCceEEE
Confidence            35678877764  334445 9999999999999877889999999999999976554        33444444444433 


Q ss_pred             ------------cceeEEEEecCCCccceecccCCcceEEEEEeCCCCEEEeecCCCeEEEEECCCCeeeeeeecCCCCe
Q 042146           78 ------------DLATIRLWDVPTATSLKTLIGHTNYVFCINFNPQSNRIVSDTFNETIRIWDIKTGKCLKVLPAHSDPV  145 (262)
Q Consensus        78 ------------~~~~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~v  145 (262)
                                  ...+|++|+++++..+..+.+|.++|.++..+  +.++++|+.|++|++||++++++++.+.+|...|
T Consensus       297 ~~~~~~~~~sgs~D~tVkVW~v~n~~~l~l~~~h~~~V~~v~~~--~~~lvsgs~d~~v~VW~~~~~~cl~sl~gH~~~V  374 (537)
T KOG0274|consen  297 LTIDPFLLVSGSRDNTVKVWDVTNGACLNLLRGHTGPVNCVQLD--EPLLVSGSYDGTVKVWDPRTGKCLKSLSGHTGRV  374 (537)
T ss_pred             EEccCceEeeccCCceEEEEeccCcceEEEeccccccEEEEEec--CCEEEEEecCceEEEEEhhhceeeeeecCCcceE
Confidence                        33399999999999999999999999999998  8999999999999999999999999999999999


Q ss_pred             eeEEEccCCCEEEEEeCCCeEEEEeCCC-------------------CCccEEEEEcCCCeEEEEecCCCceeeEEeccC
Q 042146          146 TAIDFNRDGTMIVTSSYDGLYRILDAST-------------------PNGKFILVGTLDNTLRLWNYSTRKILKTYSGYT  206 (262)
Q Consensus       146 ~~~~~~~~~~~l~~~~~dg~i~~~d~~~-------------------~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~  206 (262)
                      .++.+.+. ..+++|+.|++|++||++.                   ..+++|++++.|+.|++||..++++++.+.+. 
T Consensus       375 ~sl~~~~~-~~~~Sgs~D~~IkvWdl~~~~~c~~tl~~h~~~v~~l~~~~~~Lvs~~aD~~Ik~WD~~~~~~~~~~~~~-  452 (537)
T KOG0274|consen  375 YSLIVDSE-NRLLSGSLDTTIKVWDLRTKRKCIHTLQGHTSLVSSLLLRDNFLVSSSADGTIKLWDAEEGECLRTLEGR-  452 (537)
T ss_pred             EEEEecCc-ceEEeeeeccceEeecCCchhhhhhhhcCCcccccccccccceeEeccccccEEEeecccCceeeeeccC-
Confidence            99988765 8999999999999999987                   45789999999999999999999999999862 


Q ss_pred             CceeEEEEEEecCCCeeEEccccceEEEEEcCCCCeEEEeeecCCCcEEEEeecc
Q 042146          207 NSKYCISSTFSVTNGKYIVSHRDPVISVASHPAKNIIASGALDNDRTMKIWTQEK  261 (262)
Q Consensus       207 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~d~d~~i~iw~~~~  261 (262)
                                          |...|..+++.  ...+++++  .||.+++||++.
T Consensus       453 --------------------~~~~v~~l~~~--~~~il~s~--~~~~~~l~dl~~  483 (537)
T KOG0274|consen  453 --------------------HVGGVSALALG--KEEILCSS--DDGSVKLWDLRS  483 (537)
T ss_pred             --------------------CcccEEEeecC--cceEEEEe--cCCeeEEEeccc
Confidence                                34567777766  56777888  899999999875

>KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton]

Probab=100.00  E-value=5.2e-31  Score=194.29  Aligned_cols=228  Identities=27%  Similarity=0.450  Sum_probs=189.0

Q ss_pred             CCCCceeeec-ccccceecccCcCceEEEEEccC---CCeEEEecCCCeEEEeecCCCCCCCCCCCCCCccccCCccccc
Q 042146            2 SSDRSLESFR-PYTLTQTLNGHLRAVSYVKFSHD---GRLLTSSSAEKTLLTYSLSSISNFDSTPPSPLQKFTGHEQGIS   77 (262)
Q Consensus         2 s~d~~i~~~~-~~~~~~~~~~h~~~v~~~~~~~~---~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~   77 (262)
                      ++||.++.|. .++..+++.+|.++|.+++|.-.   ...|++++.|.++++|..+.....    ........+|...|.
T Consensus       122 sYDg~~riWd~~Gk~~~~~~Ght~~ik~v~~v~~n~~~~~fvsas~Dqtl~Lw~~~~~~~~----~~~~~~~~GHk~~V~  197 (423)
T KOG0313|consen  122 SYDGTSRIWDLKGKSIKTIVGHTGPIKSVAWVIKNSSSCLFVSASMDQTLRLWKWNVGENK----VKALKVCRGHKRSVD  197 (423)
T ss_pred             ecCCeeEEEecCCceEEEEecCCcceeeeEEEecCCccceEEEecCCceEEEEEecCchhh----hhHHhHhccccccee
Confidence            5899999996 67899999999999998888543   336999999999999987653322    122223336766665


Q ss_pred             cce---------------eEEEEecC-------------------------CCccceecccCCcceEEEEEeCCCCEEEe
Q 042146           78 DLA---------------TIRLWDVP-------------------------TATSLKTLIGHTNYVFCINFNPQSNRIVS  117 (262)
Q Consensus        78 ~~~---------------~i~v~d~~-------------------------~~~~~~~~~~~~~~v~~~~~~~~~~~l~~  117 (262)
                      ++.               .|++|+.+                         ++.++.++.+|.++|.++.|++ ...+++
T Consensus       198 sVsv~~sgtr~~SgS~D~~lkiWs~~~~~~~~~E~~s~~rrk~~~~~~~~~~r~P~vtl~GHt~~Vs~V~w~d-~~v~yS  276 (423)
T KOG0313|consen  198 SVSVDSSGTRFCSGSWDTMLKIWSVETDEEDELESSSNRRRKKQKREKEGGTRTPLVTLEGHTEPVSSVVWSD-ATVIYS  276 (423)
T ss_pred             EEEecCCCCeEEeecccceeeecccCCCccccccccchhhhhhhhhhhcccccCceEEecccccceeeEEEcC-CCceEe
Confidence            544               89999932                         1234556789999999999997 778999


Q ss_pred             ecCCCeEEEEECCCCeeeeeeecCCCCeeeEEEccCCCEEEEEeCCCeEEEEeCCC------------------------
Q 042146          118 DTFNETIRIWDIKTGKCLKVLPAHSDPVTAIDFNRDGTMIVTSSYDGLYRILDAST------------------------  173 (262)
Q Consensus       118 ~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~d~~~------------------------  173 (262)
                      ++.|.+|+.||++++..+..+.. ...++++.++|..++|++|+.|..+++||.|.                        
T Consensus       277 ~SwDHTIk~WDletg~~~~~~~~-~ksl~~i~~~~~~~Ll~~gssdr~irl~DPR~~~gs~v~~s~~gH~nwVssvkwsp  355 (423)
T KOG0313|consen  277 VSWDHTIKVWDLETGGLKSTLTT-NKSLNCISYSPLSKLLASGSSDRHIRLWDPRTGDGSVVSQSLIGHKNWVSSVKWSP  355 (423)
T ss_pred             ecccceEEEEEeecccceeeeec-CcceeEeecccccceeeecCCCCceeecCCCCCCCceeEEeeecchhhhhheecCC
Confidence            99999999999999999888864 67899999999999999999999999999987                        


Q ss_pred             CCccEEEEEcCCCeEEEEecCCCc-eeeEEeccCCceeEEEEEEecCCCeeEEccccceEEEEEcCCCCeEEEeeecCCC
Q 042146          174 PNGKFILVGTLDNTLRLWNYSTRK-ILKTYSGYTNSKYCISSTFSVTNGKYIVSHRDPVISVASHPAKNIIASGALDNDR  252 (262)
Q Consensus       174 ~~~~~l~~~~~dg~i~i~d~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~d~d~  252 (262)
                      .+...|++|+.|+++++||+++.+ ++..+.+                      |.+.|.++.|. ++..+++||  .|.
T Consensus       356 ~~~~~~~S~S~D~t~klWDvRS~k~plydI~~----------------------h~DKvl~vdW~-~~~~IvSGG--aD~  410 (423)
T KOG0313|consen  356 TNEFQLVSGSYDNTVKLWDVRSTKAPLYDIAG----------------------HNDKVLSVDWN-EGGLIVSGG--ADN  410 (423)
T ss_pred             CCceEEEEEecCCeEEEEEeccCCCcceeecc----------------------CCceEEEEecc-CCceEEecc--Ccc
Confidence            456679999999999999999877 8888877                      88999999998 566899999  899


Q ss_pred             cEEEEeec
Q 042146          253 TMKIWTQE  260 (262)
Q Consensus       253 ~i~iw~~~  260 (262)
                      +|+|++-.
T Consensus       411 ~l~i~~~~  418 (423)
T KOG0313|consen  411 KLRIFKGS  418 (423)
T ss_pred             eEEEeccc
Confidence            99998753

>KOG0645 consensus WD40 repeat protein [General function prediction only]

Probab=100.00  E-value=6.6e-31  Score=185.85  Aligned_cols=210  Identities=25%  Similarity=0.399  Sum_probs=170.7

Q ss_pred             CCCCceeeecc----cccceecccCcCceEEEEEccCCCeEEEecCCCeEEEeecCCCCCCCCCCCCCCccccCCccccc
Q 042146            2 SSDRSLESFRP----YTLTQTLNGHLRAVSYVKFSHDGRLLTSSSAEKTLLTYSLSSISNFDSTPPSPLQKFTGHEQGIS   77 (262)
Q Consensus         2 s~d~~i~~~~~----~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~   77 (262)
                      |.|.++-+|+.    ++.+.+++||+..|.|++|+++|++||+++.|+.|-||..+..                      
T Consensus        80 SFD~t~~Iw~k~~~efecv~~lEGHEnEVK~Vaws~sG~~LATCSRDKSVWiWe~ded----------------------  137 (312)
T KOG0645|consen   80 SFDATVVIWKKEDGEFECVATLEGHENEVKCVAWSASGNYLATCSRDKSVWIWEIDED----------------------  137 (312)
T ss_pred             eccceEEEeecCCCceeEEeeeeccccceeEEEEcCCCCEEEEeeCCCeEEEEEecCC----------------------
Confidence            56788888864    5889999999999999999999999999999999999966431                      


Q ss_pred             cceeEEEEecCCCccceecccCCcceEEEEEeCCCCEEEeecCCCeEEEEECC---CCeeeeeeecCCCCeeeEEEccCC
Q 042146           78 DLATIRLWDVPTATSLKTLIGHTNYVFCINFNPQSNRIVSDTFNETIRIWDIK---TGKCLKVLPAHSDPVTAIDFNRDG  154 (262)
Q Consensus        78 ~~~~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~---~~~~~~~~~~~~~~v~~~~~~~~~  154 (262)
                                +.-++...+++|...|..+.|+|...+|++++.|.+|++|.-.   .-.++.++.+|...|.+++|+|.|
T Consensus       138 ----------dEfec~aVL~~HtqDVK~V~WHPt~dlL~S~SYDnTIk~~~~~~dddW~c~~tl~g~~~TVW~~~F~~~G  207 (312)
T KOG0645|consen  138 ----------DEFECIAVLQEHTQDVKHVIWHPTEDLLFSCSYDNTIKVYRDEDDDDWECVQTLDGHENTVWSLAFDNIG  207 (312)
T ss_pred             ----------CcEEEEeeeccccccccEEEEcCCcceeEEeccCCeEEEEeecCCCCeeEEEEecCccceEEEEEecCCC
Confidence                      1234666788999999999999999999999999999999866   236788999999999999999999


Q ss_pred             CEEEEEeCCCeEEEEeCCC-------------C-CccEEEEEcCCCeEEEEecCCCceeeEEeccCCceeEEEEEEecCC
Q 042146          155 TMIVTSSYDGLYRILDAST-------------P-NGKFILVGTLDNTLRLWNYSTRKILKTYSGYTNSKYCISSTFSVTN  220 (262)
Q Consensus       155 ~~l~~~~~dg~i~~~d~~~-------------~-~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~  220 (262)
                      ..|++++.|+++++|-...             | +...|++++.|+.|++|.....-.-..+....              
T Consensus       208 ~rl~s~sdD~tv~Iw~~~~~~~~~~sr~~Y~v~W~~~~IaS~ggD~~i~lf~~s~~~d~p~~~l~~--------------  273 (312)
T KOG0645|consen  208 SRLVSCSDDGTVSIWRLYTDLSGMHSRALYDVPWDNGVIASGGGDDAIRLFKESDSPDEPSWNLLA--------------  273 (312)
T ss_pred             ceEEEecCCcceEeeeeccCcchhcccceEeeeecccceEeccCCCEEEEEEecCCCCCchHHHHH--------------
Confidence            9999999999999998544             1 24679999999999999765321111110000              


Q ss_pred             CeeEEccccceEEEEEcCC-CCeEEEeeecCCCcEEEEeec
Q 042146          221 GKYIVSHRDPVISVASHPA-KNIIASGALDNDRTMKIWTQE  260 (262)
Q Consensus       221 ~~~~~~~~~~v~~~~~~p~-~~~l~~~~~d~d~~i~iw~~~  260 (262)
                       .....|...|+++.|+|. ..+|++++  .||.|++|.+.
T Consensus       274 -~~~~aHe~dVNsV~w~p~~~~~L~s~~--DDG~v~~W~l~  311 (312)
T KOG0645|consen  274 -KKEGAHEVDVNSVQWNPKVSNRLASGG--DDGIVNFWELE  311 (312)
T ss_pred             -hhhcccccccceEEEcCCCCCceeecC--CCceEEEEEec
Confidence             000118889999999995 77899998  89999999985

>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]

Probab=100.00  E-value=4.9e-30  Score=185.14  Aligned_cols=227  Identities=24%  Similarity=0.437  Sum_probs=186.7

Q ss_pred             ccccceecccCcCceEEEEEccCCCeEEEecCCCeEEEeecCCCCCCCCCC----CCCCccccCCcccccc-----ceeE
Q 042146           12 PYTLTQTLNGHLRAVSYVKFSHDGRLLTSSSAEKTLLTYSLSSISNFDSTP----PSPLQKFTGHEQGISD-----LATI   82 (262)
Q Consensus        12 ~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~----~~~~~~~~~~~~~v~~-----~~~i   82 (262)
                      .+++.+.+..-.+.|+++.|+++|.+|++++.|.+++|||...........    +....++..+...+..     ..+|
T Consensus         3 s~~~ak~f~~~~~~i~sl~fs~~G~~litss~dDsl~LYd~~~g~~~~ti~skkyG~~~~~Fth~~~~~i~sStk~d~tI   82 (311)
T KOG1446|consen    3 SFRPAKVFRETNGKINSLDFSDDGLLLITSSEDDSLRLYDSLSGKQVKTINSKKYGVDLACFTHHSNTVIHSSTKEDDTI   82 (311)
T ss_pred             ccccccccccCCCceeEEEecCCCCEEEEecCCCeEEEEEcCCCceeeEeecccccccEEEEecCCceEEEccCCCCCce
Confidence            456667777778899999999999999999999999999987765443222    2233344444333211     2289


Q ss_pred             EEEecCCCccceecccCCcceEEEEEeCCCCEEEeecCCCeEEEEECCCCeeeeeeecCCCCeeeEEEccCCCEEEEEeC
Q 042146           83 RLWDVPTATSLKTLIGHTNYVFCINFNPQSNRIVSDTFNETIRIWDIKTGKCLKVLPAHSDPVTAIDFNRDGTMIVTSSY  162 (262)
Q Consensus        83 ~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~  162 (262)
                      +..++.+.+.++-+.+|...|++|+.+|-+..+++++.|++|++||++..++...+....  -..++|.|+|-++|++..
T Consensus        83 ryLsl~dNkylRYF~GH~~~V~sL~~sP~~d~FlS~S~D~tvrLWDlR~~~cqg~l~~~~--~pi~AfDp~GLifA~~~~  160 (311)
T KOG1446|consen   83 RYLSLHDNKYLRYFPGHKKRVNSLSVSPKDDTFLSSSLDKTVRLWDLRVKKCQGLLNLSG--RPIAAFDPEGLIFALANG  160 (311)
T ss_pred             EEEEeecCceEEEcCCCCceEEEEEecCCCCeEEecccCCeEEeeEecCCCCceEEecCC--CcceeECCCCcEEEEecC
Confidence            999999999999999999999999999988999999999999999999888777665433  346789999999999998


Q ss_pred             CCeEEEEeCCC-------------------------CCccEEEEEcCCCeEEEEecCCCceeeEEeccCCceeEEEEEEe
Q 042146          163 DGLYRILDAST-------------------------PNGKFILVGTLDNTLRLWNYSTRKILKTYSGYTNSKYCISSTFS  217 (262)
Q Consensus       163 dg~i~~~d~~~-------------------------~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~  217 (262)
                      ...|++||+|+                         ++|++++.++..+.+++.|.-+|....++..+.+.         
T Consensus       161 ~~~IkLyD~Rs~dkgPF~tf~i~~~~~~ew~~l~FS~dGK~iLlsT~~s~~~~lDAf~G~~~~tfs~~~~~---------  231 (311)
T KOG1446|consen  161 SELIKLYDLRSFDKGPFTTFSITDNDEAEWTDLEFSPDGKSILLSTNASFIYLLDAFDGTVKSTFSGYPNA---------  231 (311)
T ss_pred             CCeEEEEEecccCCCCceeEccCCCCccceeeeEEcCCCCEEEEEeCCCcEEEEEccCCcEeeeEeeccCC---------
Confidence            88999999998                         89999999999999999999999999998875432         


Q ss_pred             cCCCeeEEccccceEEEEEcCCCCeEEEeeecCCCcEEEEeecc
Q 042146          218 VTNGKYIVSHRDPVISVASHPAKNIIASGALDNDRTMKIWTQEK  261 (262)
Q Consensus       218 ~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~d~d~~i~iw~~~~  261 (262)
                                ..--...+|+|+++++++|+  +||+|.+|+++.
T Consensus       232 ----------~~~~~~a~ftPds~Fvl~gs--~dg~i~vw~~~t  263 (311)
T KOG1446|consen  232 ----------GNLPLSATFTPDSKFVLSGS--DDGTIHVWNLET  263 (311)
T ss_pred             ----------CCcceeEEECCCCcEEEEec--CCCcEEEEEcCC
Confidence                      11125778999999999999  899999999864

>PTZ00420 coronin; Provisional

Probab=100.00  E-value=5.1e-30  Score=207.82  Aligned_cols=208  Identities=18%  Similarity=0.301  Sum_probs=159.3

Q ss_pred             CCceeeeccc--ccceecccCcCceEEEEEccC-CCeEEEecCCCeEEEeecCCCCCCCCCCCCCCccccCCccccccce
Q 042146            4 DRSLESFRPY--TLTQTLNGHLRAVSYVKFSHD-GRLLTSSSAEKTLLTYSLSSISNFDSTPPSPLQKFTGHEQGISDLA   80 (262)
Q Consensus         4 d~~i~~~~~~--~~~~~~~~h~~~v~~~~~~~~-~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~   80 (262)
                      ++.+..|+..  ..+..+.+|.++|.+++|+|+ +.+||+|+.|++|++||+.......    .                
T Consensus        53 ~gvI~L~~~~r~~~v~~L~gH~~~V~~lafsP~~~~lLASgS~DgtIrIWDi~t~~~~~----~----------------  112 (568)
T PTZ00420         53 IGAIRLENQMRKPPVIKLKGHTSSILDLQFNPCFSEILASGSEDLTIRVWEIPHNDESV----K----------------  112 (568)
T ss_pred             eeEEEeeecCCCceEEEEcCCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCCccc----c----------------
Confidence            4556666533  356788999999999999997 7899999999999999886421000    0                


Q ss_pred             eEEEEecCCCccceecccCCcceEEEEEeCCCCE-EEeecCCCeEEEEECCCCeeeeeeecCCCCeeeEEEccCCCEEEE
Q 042146           81 TIRLWDVPTATSLKTLIGHTNYVFCINFNPQSNR-IVSDTFNETIRIWDIKTGKCLKVLPAHSDPVTAIDFNRDGTMIVT  159 (262)
Q Consensus        81 ~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~-l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~  159 (262)
                             ....++..+.+|...|.+++|+|++.. +++++.|++|++||+++++.+..+. |...|.+++|+|+|.+|++
T Consensus       113 -------~i~~p~~~L~gH~~~V~sVaf~P~g~~iLaSgS~DgtIrIWDl~tg~~~~~i~-~~~~V~SlswspdG~lLat  184 (568)
T PTZ00420        113 -------EIKDPQCILKGHKKKISIIDWNPMNYYIMCSSGFDSFVNIWDIENEKRAFQIN-MPKKLSSLKWNIKGNLLSG  184 (568)
T ss_pred             -------ccccceEEeecCCCcEEEEEECCCCCeEEEEEeCCCeEEEEECCCCcEEEEEe-cCCcEEEEEECCCCCEEEE
Confidence                   001234456789999999999998875 5789999999999999998777775 6678999999999999999


Q ss_pred             EeCCCeEEEEeCCC-------------------------CCccEEEEEcCCC----eEEEEecCC-CceeeEEeccCCce
Q 042146          160 SSYDGLYRILDAST-------------------------PNGKFILVGTLDN----TLRLWNYST-RKILKTYSGYTNSK  209 (262)
Q Consensus       160 ~~~dg~i~~~d~~~-------------------------~~~~~l~~~~~dg----~i~i~d~~~-~~~~~~~~~~~~~~  209 (262)
                      ++.|+.|++||+++                         +++.+|++++.++    .|+|||++. ++++..+..+.   
T Consensus       185 ~s~D~~IrIwD~Rsg~~i~tl~gH~g~~~s~~v~~~~fs~d~~~IlTtG~d~~~~R~VkLWDlr~~~~pl~~~~ld~---  261 (568)
T PTZ00420        185 TCVGKHMHIIDPRKQEIASSFHIHDGGKNTKNIWIDGLGGDDNYILSTGFSKNNMREMKLWDLKNTTSALVTMSIDN---  261 (568)
T ss_pred             EecCCEEEEEECCCCcEEEEEecccCCceeEEEEeeeEcCCCCEEEEEEcCCCCccEEEEEECCCCCCceEEEEecC---
Confidence            99999999999986                         2446788877664    799999995 55565543211   


Q ss_pred             eEEEEEEecCCCeeEEccccceEEEEEcCCCCeEEEeeecCCCcEEEEeecc
Q 042146          210 YCISSTFSVTNGKYIVSHRDPVISVASHPAKNIIASGALDNDRTMKIWTQEK  261 (262)
Q Consensus       210 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~d~d~~i~iw~~~~  261 (262)
                                       +.+.+......+++.++++|+  .|++|++|++..
T Consensus       262 -----------------~~~~L~p~~D~~tg~l~lsGk--GD~tIr~~e~~~  294 (568)
T PTZ00420        262 -----------------ASAPLIPHYDESTGLIYLIGK--GDGNCRYYQHSL  294 (568)
T ss_pred             -----------------CccceEEeeeCCCCCEEEEEE--CCCeEEEEEccC
Confidence                             233334444456688999998  899999999854

>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]

Probab=99.98  E-value=3.5e-30  Score=185.82  Aligned_cols=242  Identities=24%  Similarity=0.457  Sum_probs=188.1

Q ss_pred             eecccCcCceEEEEEccCCCeEEEecCCCeEEEeecCCCCCC----C-----CCC-CCCCccccCCccccccce------
Q 042146           17 QTLNGHLRAVSYVKFSHDGRLLTSSSAEKTLLTYSLSSISNF----D-----STP-PSPLQKFTGHEQGISDLA------   80 (262)
Q Consensus        17 ~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~----~-----~~~-~~~~~~~~~~~~~v~~~~------   80 (262)
                      ..+..|.+++++.+|+|||.++|+|+.|-.|+|.|++..-..    +     ... ...+..+-.|...+..+.      
T Consensus       106 ~ylt~HK~~cR~aafs~DG~lvATGsaD~SIKildvermlaks~~~em~~~~~qa~hPvIRTlYDH~devn~l~FHPre~  185 (430)
T KOG0640|consen  106 KYLTSHKSPCRAAAFSPDGSLVATGSADASIKILDVERMLAKSKPKEMISGDTQARHPVIRTLYDHVDEVNDLDFHPRET  185 (430)
T ss_pred             EEEeecccceeeeeeCCCCcEEEccCCcceEEEeehhhhhhhcchhhhccCCcccCCceEeehhhccCcccceeecchhh
Confidence            345679999999999999999999999999999998732110    0     111 122344555655555444      


Q ss_pred             ---------eEEEEecCCCccceecc--cCCcceEEEEEeCCCCEEEeecCCCeEEEEECCCCeeeeee---ecCCCCee
Q 042146           81 ---------TIRLWDVPTATSLKTLI--GHTNYVFCINFNPQSNRIVSDTFNETIRIWDIKTGKCLKVL---PAHSDPVT  146 (262)
Q Consensus        81 ---------~i~v~d~~~~~~~~~~~--~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~---~~~~~~v~  146 (262)
                               +|+++|.......+.++  ....+|.++.|+|.|.++++|..-.++++||+++.++....   ..|.+.|+
T Consensus       186 ILiS~srD~tvKlFDfsK~saKrA~K~~qd~~~vrsiSfHPsGefllvgTdHp~~rlYdv~T~QcfvsanPd~qht~ai~  265 (430)
T KOG0640|consen  186 ILISGSRDNTVKLFDFSKTSAKRAFKVFQDTEPVRSISFHPSGEFLLVGTDHPTLRLYDVNTYQCFVSANPDDQHTGAIT  265 (430)
T ss_pred             eEEeccCCCeEEEEecccHHHHHHHHHhhccceeeeEeecCCCceEEEecCCCceeEEeccceeEeeecCccccccccee
Confidence                     89999987654433332  24578999999999999999999999999999998875543   45889999


Q ss_pred             eEEEccCCCEEEEEeCCCeEEEEeCCC----------------------CCccEEEEEcCCCeEEEEecCCCceeeEEec
Q 042146          147 AIDFNRDGTMIVTSSYDGLYRILDAST----------------------PNGKFILVGTLDNTLRLWNYSTRKILKTYSG  204 (262)
Q Consensus       147 ~~~~~~~~~~l~~~~~dg~i~~~d~~~----------------------~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~  204 (262)
                      ++.+++.+++.++++.||.|++||--+                      .+++|+++.+.|..+++|.+.+++++..+.+
T Consensus       266 ~V~Ys~t~~lYvTaSkDG~IklwDGVS~rCv~t~~~AH~gsevcSa~Ftkn~kyiLsSG~DS~vkLWEi~t~R~l~~YtG  345 (430)
T KOG0640|consen  266 QVRYSSTGSLYVTASKDGAIKLWDGVSNRCVRTIGNAHGGSEVCSAVFTKNGKYILSSGKDSTVKLWEISTGRMLKEYTG  345 (430)
T ss_pred             EEEecCCccEEEEeccCCcEEeeccccHHHHHHHHhhcCCceeeeEEEccCCeEEeecCCcceeeeeeecCCceEEEEec
Confidence            999999999999999999999999654                      6899999999999999999999999999886


Q ss_pred             cCCc---eeEEEEEEecCCCe------------------------eEEccccceEEEEEcCCCCeEEEeeecCCCcEEEE
Q 042146          205 YTNS---KYCISSTFSVTNGK------------------------YIVSHRDPVISVASHPAKNIIASGALDNDRTMKIW  257 (262)
Q Consensus       205 ~~~~---~~~~~~~~~~~~~~------------------------~~~~~~~~v~~~~~~p~~~~l~~~~~d~d~~i~iw  257 (262)
                      ....   .......|...+.+                        +-.+|.+.++.+.-||.+..+.|++  .|-.+|+|
T Consensus       346 Ag~tgrq~~rtqAvFNhtEdyVl~pDEas~slcsWdaRtadr~~l~slgHn~a~R~i~HSP~~p~FmTcs--dD~raRFW  423 (430)
T KOG0640|consen  346 AGTTGRQKHRTQAVFNHTEDYVLFPDEASNSLCSWDARTADRVALLSLGHNGAVRWIVHSPVEPAFMTCS--DDFRARFW  423 (430)
T ss_pred             CCcccchhhhhhhhhcCccceEEccccccCceeeccccchhhhhhcccCCCCCceEEEeCCCCCceeeec--ccceeeee
Confidence            5221   11112222222222                        2234999999999999999999999  89999999


Q ss_pred             eec
Q 042146          258 TQE  260 (262)
Q Consensus       258 ~~~  260 (262)
                      --.
T Consensus       424 yrr  426 (430)
T KOG0640|consen  424 YRR  426 (430)
T ss_pred             eec
Confidence            653

>KOG1407 consensus WD40 repeat protein [Function unknown]

Probab=99.98  E-value=3.9e-30  Score=181.18  Aligned_cols=230  Identities=24%  Similarity=0.359  Sum_probs=180.5

Q ss_pred             eeeecccccceecccCcCceEEEEEccCCCeEEEecCCCeEEEeecCCCCCCCCCC----CCC---CccccCCcc---cc
Q 042146            7 LESFRPYTLTQTLNGHLRAVSYVKFSHDGRLLTSSSAEKTLLTYSLSSISNFDSTP----PSP---LQKFTGHEQ---GI   76 (262)
Q Consensus         7 i~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~----~~~---~~~~~~~~~---~v   76 (262)
                      +..+..+.. +.+++|.++|.+++|+.+|..|++|+.|+++.+|+++.........    ...   +...+.+..   ..
T Consensus         5 ~~~~~~l~~-r~~~~~~~~v~Sv~wn~~g~~lasgs~dktv~v~n~e~~r~~~~~~~~gh~~svdql~w~~~~~d~~ata   83 (313)
T KOG1407|consen    5 LPKFKSLKR-RELQGHVQKVHSVAWNCDGTKLASGSFDKTVSVWNLERDRFRKELVYRGHTDSVDQLCWDPKHPDLFATA   83 (313)
T ss_pred             ccchhhhhh-HHhhhhhhcceEEEEcccCceeeecccCCceEEEEecchhhhhhhcccCCCcchhhheeCCCCCcceEEe
Confidence            333444333 6778999999999999999999999999999999987642211100    001   111111111   12


Q ss_pred             ccceeEEEEecCCCccceecccCCcceEEEEEeCCCCEEEeecCCCeEEEEECCCC------------------------
Q 042146           77 SDLATIRLWDVPTATSLKTLIGHTNYVFCINFNPQSNRIVSDTFNETIRIWDIKTG------------------------  132 (262)
Q Consensus        77 ~~~~~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~------------------------  132 (262)
                      .....|++||++.+++........+.+ -+.|+|+|++++++..|..|...|.++.                        
T Consensus        84 s~dk~ir~wd~r~~k~~~~i~~~~eni-~i~wsp~g~~~~~~~kdD~it~id~r~~~~~~~~~~~~e~ne~~w~~~nd~F  162 (313)
T KOG1407|consen   84 SGDKTIRIWDIRSGKCTARIETKGENI-NITWSPDGEYIAVGNKDDRITFIDARTYKIVNEEQFKFEVNEISWNNSNDLF  162 (313)
T ss_pred             cCCceEEEEEeccCcEEEEeeccCcce-EEEEcCCCCEEEEecCcccEEEEEecccceeehhcccceeeeeeecCCCCEE
Confidence            233399999999999988876544444 5789999999999999999998888653                        


Q ss_pred             -----------------eeeeeeecCCCCeeeEEEccCCCEEEEEeCCCeEEEEeCCC--------------------CC
Q 042146          133 -----------------KCLKVLPAHSDPVTAIDFNRDGTMIVTSSYDGLYRILDAST--------------------PN  175 (262)
Q Consensus       133 -----------------~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~d~~~--------------------~~  175 (262)
                                       +++..+++|.....|+.|+|+|++|++|+.|..+.+||+..                    .+
T Consensus       163 flt~GlG~v~ILsypsLkpv~si~AH~snCicI~f~p~GryfA~GsADAlvSLWD~~ELiC~R~isRldwpVRTlSFS~d  242 (313)
T KOG1407|consen  163 FLTNGLGCVEILSYPSLKPVQSIKAHPSNCICIEFDPDGRYFATGSADALVSLWDVDELICERCISRLDWPVRTLSFSHD  242 (313)
T ss_pred             EEecCCceEEEEeccccccccccccCCcceEEEEECCCCceEeeccccceeeccChhHhhhheeeccccCceEEEEeccC
Confidence                             23445668999999999999999999999999999999876                    79


Q ss_pred             ccEEEEEcCCCeEEEEecCCCceeeEEeccCCceeEEEEEEecCCCeeEEccccceEEEEEcCCCCeEEEeeecCC----
Q 042146          176 GKFILVGTLDNTLRLWNYSTRKILKTYSGYTNSKYCISSTFSVTNGKYIVSHRDPVISVASHPAKNIIASGALDND----  251 (262)
Q Consensus       176 ~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~d~d----  251 (262)
                      |++|++|++|-.|-|=++++|..+..++                       +.++...++|+|...+||.++.|.|    
T Consensus       243 g~~lASaSEDh~IDIA~vetGd~~~eI~-----------------------~~~~t~tVAWHPk~~LLAyA~ddk~~d~~  299 (313)
T KOG1407|consen  243 GRMLASASEDHFIDIAEVETGDRVWEIP-----------------------CEGPTFTVAWHPKRPLLAYACDDKDGDSN  299 (313)
T ss_pred             cceeeccCccceEEeEecccCCeEEEee-----------------------ccCCceeEEecCCCceeeEEecCCCCccc
Confidence            9999999999999999999999999998                       8899999999999999999884443    


Q ss_pred             ---CcEEEEeecc
Q 042146          252 ---RTMKIWTQEK  261 (262)
Q Consensus       252 ---~~i~iw~~~~  261 (262)
                         |.+++|-+.+
T Consensus       300 reag~vKiFG~~~  312 (313)
T KOG1407|consen  300 REAGTVKIFGLSN  312 (313)
T ss_pred             cccceeEEecCCC
Confidence               5788886654

>KOG0294 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.97  E-value=4.2e-30  Score=185.44  Aligned_cols=188  Identities=21%  Similarity=0.391  Sum_probs=162.1

Q ss_pred             cccceecccCcCceEEEEEccCCCeEEEecCCCeEEEeecCCCCCCCCCCCCCCccccCCccccccceeEEEEecCCCcc
Q 042146           13 YTLTQTLNGHLRAVSYVKFSHDGRLLTSSSAEKTLLTYSLSSISNFDSTPPSPLQKFTGHEQGISDLATIRLWDVPTATS   92 (262)
Q Consensus        13 ~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~i~v~d~~~~~~   92 (262)
                      +.+...++.|.++|++++.  +++++|+||.|-+|+|||+                                   .+...
T Consensus        33 l~~lF~~~aH~~sitavAV--s~~~~aSGssDetI~IYDm-----------------------------------~k~~q   75 (362)
T KOG0294|consen   33 LKPLFAFSAHAGSITALAV--SGPYVASGSSDETIHIYDM-----------------------------------RKRKQ   75 (362)
T ss_pred             eeccccccccccceeEEEe--cceeEeccCCCCcEEEEec-----------------------------------cchhh
Confidence            3457788999999999998  5889999999999888855                                   45566


Q ss_pred             ceecccCCcceEEEEEeCCCC--EEEeecCCCeEEEEECCCCeeeeeeecCCCCeeeEEEccCCCEEEEEeCCCeEEEEe
Q 042146           93 LKTLIGHTNYVFCINFNPQSN--RIVSDTFNETIRIWDIKTGKCLKVLPAHSDPVTAIDFNRDGTMIVTSSYDGLYRILD  170 (262)
Q Consensus        93 ~~~~~~~~~~v~~~~~~~~~~--~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~d  170 (262)
                      +..+-.|.+.|+++.|.+.-.  .|++|+.||.|.+|+...-.++..+++|.+.|+.++.+|.+++-++.+.|+.+++|+
T Consensus        76 lg~ll~HagsitaL~F~~~~S~shLlS~sdDG~i~iw~~~~W~~~~slK~H~~~Vt~lsiHPS~KLALsVg~D~~lr~WN  155 (362)
T KOG0294|consen   76 LGILLSHAGSITALKFYPPLSKSHLLSGSDDGHIIIWRVGSWELLKSLKAHKGQVTDLSIHPSGKLALSVGGDQVLRTWN  155 (362)
T ss_pred             hcceeccccceEEEEecCCcchhheeeecCCCcEEEEEcCCeEEeeeecccccccceeEecCCCceEEEEcCCceeeeeh
Confidence            677778999999999998654  899999999999999999999999999999999999999999999999999999999


Q ss_pred             CCC----------------------------------------------------------CCccEEEEEcCCCeEEEEe
Q 042146          171 AST----------------------------------------------------------PNGKFILVGTLDNTLRLWN  192 (262)
Q Consensus       171 ~~~----------------------------------------------------------~~~~~l~~~~~dg~i~i~d  192 (262)
                      +-.                                                          .++.+|++|..|+.|.+||
T Consensus       156 LV~Gr~a~v~~L~~~at~v~w~~~Gd~F~v~~~~~i~i~q~d~A~v~~~i~~~~r~l~~~~l~~~~L~vG~d~~~i~~~D  235 (362)
T KOG0294|consen  156 LVRGRVAFVLNLKNKATLVSWSPQGDHFVVSGRNKIDIYQLDNASVFREIENPKRILCATFLDGSELLVGGDNEWISLKD  235 (362)
T ss_pred             hhcCccceeeccCCcceeeEEcCCCCEEEEEeccEEEEEecccHhHhhhhhccccceeeeecCCceEEEecCCceEEEec
Confidence            755                                                          3566777777777777777


Q ss_pred             cCCCceeeEEeccCCceeEEEEEEecCCCeeEEccccceEEEEE--cCCCCeEEEeeecCCCcEEEEeecc
Q 042146          193 YSTRKILKTYSGYTNSKYCISSTFSVTNGKYIVSHRDPVISVAS--HPAKNIIASGALDNDRTMKIWTQEK  261 (262)
Q Consensus       193 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~--~p~~~~l~~~~~d~d~~i~iw~~~~  261 (262)
                      .....+...+.+                      |..+|.++.+  .|++.+|+|+|  .||.|+|||++.
T Consensus       236 ~ds~~~~~~~~A----------------------H~~RVK~i~~~~~~~~~~lvTaS--SDG~I~vWd~~~  282 (362)
T KOG0294|consen  236 TDSDTPLTEFLA----------------------HENRVKDIASYTNPEHEYLVTAS--SDGFIKVWDIDM  282 (362)
T ss_pred             cCCCccceeeec----------------------chhheeeeEEEecCCceEEEEec--cCceEEEEEccc
Confidence            777666666666                      8899999985  57789999999  999999999874

>KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.97  E-value=1e-30  Score=183.43  Aligned_cols=199  Identities=20%  Similarity=0.379  Sum_probs=166.6

Q ss_pred             CCceeeecc-----cccceecccCcCceEEEEEccC-CCeEEEecCCCeEEEeecCCCCCCCCCCCCCCccccCCccccc
Q 042146            4 DRSLESFRP-----YTLTQTLNGHLRAVSYVKFSHD-GRLLTSSSAEKTLLTYSLSSISNFDSTPPSPLQKFTGHEQGIS   77 (262)
Q Consensus         4 d~~i~~~~~-----~~~~~~~~~h~~~v~~~~~~~~-~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~   77 (262)
                      .|.+.+.+.     .+..+.+. -...+..++|+++ .+.+++++.||++++||+..                       
T Consensus        37 ~G~L~ile~~~~~gi~e~~s~d-~~D~LfdV~Wse~~e~~~~~a~GDGSLrl~d~~~-----------------------   92 (311)
T KOG0277|consen   37 NGRLFILEVTDPKGIQECQSYD-TEDGLFDVAWSENHENQVIAASGDGSLRLFDLTM-----------------------   92 (311)
T ss_pred             CceEEEEecCCCCCeEEEEeee-cccceeEeeecCCCcceEEEEecCceEEEeccCC-----------------------
Confidence            455555543     12333343 3577999999996 56789999999999997532                       


Q ss_pred             cceeEEEEecCCCccceecccCCcceEEEEEeC-CCCEEEeecCCCeEEEEECCCCeeeeeeecCCCCeeeEEEcc-CCC
Q 042146           78 DLATIRLWDVPTATSLKTLIGHTNYVFCINFNP-QSNRIVSDTFNETIRIWDIKTGKCLKVLPAHSDPVTAIDFNR-DGT  155 (262)
Q Consensus        78 ~~~~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~-~~~  155 (262)
                                 ...++..++.|+.+|.++.|++ .+..++++|.|++|++|+....+.+.++.+|..-|...+|+| .++
T Consensus        93 -----------~s~Pi~~~kEH~~EV~Svdwn~~~r~~~ltsSWD~TiKLW~~~r~~Sv~Tf~gh~~~Iy~a~~sp~~~n  161 (311)
T KOG0277|consen   93 -----------PSKPIHKFKEHKREVYSVDWNTVRRRIFLTSSWDGTIKLWDPNRPNSVQTFNGHNSCIYQAAFSPHIPN  161 (311)
T ss_pred             -----------CCcchhHHHhhhhheEEeccccccceeEEeeccCCceEeecCCCCcceEeecCCccEEEEEecCCCCCC
Confidence                       3457888999999999999999 666788889999999999999999999999999999999999 778


Q ss_pred             EEEEEeCCCeEEEEeCCC---------------------CCccEEEEEcCCCeEEEEecCCCc-eeeEEeccCCceeEEE
Q 042146          156 MIVTSSYDGLYRILDAST---------------------PNGKFILVGTLDNTLRLWNYSTRK-ILKTYSGYTNSKYCIS  213 (262)
Q Consensus       156 ~l~~~~~dg~i~~~d~~~---------------------~~~~~l~~~~~dg~i~i~d~~~~~-~~~~~~~~~~~~~~~~  213 (262)
                      .+++++.|+++++||++.                     -+...|++|+.|+.|+.||+++.+ ++..+.+         
T Consensus       162 lfas~Sgd~~l~lwdvr~~gk~~~i~ah~~Eil~cdw~ky~~~vl~Tg~vd~~vr~wDir~~r~pl~eL~g---------  232 (311)
T KOG0277|consen  162 LFASASGDGTLRLWDVRSPGKFMSIEAHNSEILCCDWSKYNHNVLATGGVDNLVRGWDIRNLRTPLFELNG---------  232 (311)
T ss_pred             eEEEccCCceEEEEEecCCCceeEEEeccceeEeecccccCCcEEEecCCCceEEEEehhhccccceeecC---------
Confidence            999999999999999987                     467889999999999999999754 5566655         


Q ss_pred             EEEecCCCeeEEccccceEEEEEcCC-CCeEEEeeecCCCcEEEEeecc
Q 042146          214 STFSVTNGKYIVSHRDPVISVASHPA-KNIIASGALDNDRTMKIWTQEK  261 (262)
Q Consensus       214 ~~~~~~~~~~~~~~~~~v~~~~~~p~-~~~l~~~~~d~d~~i~iw~~~~  261 (262)
                                   |.-.|+.+.|||. ..+|++++  .|-+++||+...
T Consensus       233 -------------h~~AVRkvk~Sph~~~lLaSas--YDmT~riw~~~~  266 (311)
T KOG0277|consen  233 -------------HGLAVRKVKFSPHHASLLASAS--YDMTVRIWDPER  266 (311)
T ss_pred             -------------CceEEEEEecCcchhhHhhhcc--ccceEEeccccc
Confidence                         8899999999997 46889999  899999999874

>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=99.97  E-value=9.9e-30  Score=176.78  Aligned_cols=220  Identities=23%  Similarity=0.430  Sum_probs=186.9

Q ss_pred             CCCceeeecccc--cceecccCcCceEEEEEccCCCeEEEecCCCeEEEeecCCCCCCCCCCCCCCccccCCccccccce
Q 042146            3 SDRSLESFRPYT--LTQTLNGHLRAVSYVKFSHDGRLLTSSSAEKTLLTYSLSSISNFDSTPPSPLQKFTGHEQGISDLA   80 (262)
Q Consensus         3 ~d~~i~~~~~~~--~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~   80 (262)
                      +|++++.|.|.+  +++++.+|..+|..++.+.|...|++++.|+.+.+||+.+.        +....+.+|...+..+.
T Consensus        37 sdrtvrLWNp~rg~liktYsghG~EVlD~~~s~Dnskf~s~GgDk~v~vwDV~TG--------kv~Rr~rgH~aqVNtV~  108 (307)
T KOG0316|consen   37 SDRTVRLWNPLRGALIKTYSGHGHEVLDAALSSDNSKFASCGGDKAVQVWDVNTG--------KVDRRFRGHLAQVNTVR  108 (307)
T ss_pred             CCceEEeecccccceeeeecCCCceeeeccccccccccccCCCCceEEEEEcccC--------eeeeecccccceeeEEE
Confidence            689999998754  89999999999999999999999999999999999987654        44455666665554444


Q ss_pred             ---------------eEEEEecCC--CccceecccCCcceEEEEEeCCCCEEEeecCCCeEEEEECCCCeeeeeeecCCC
Q 042146           81 ---------------TIRLWDVPT--ATSLKTLIGHTNYVFCINFNPQSNRIVSDTFNETIRIWDIKTGKCLKVLPAHSD  143 (262)
Q Consensus        81 ---------------~i~v~d~~~--~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~  143 (262)
                                     .+++||.++  .++++.+......|.++.++  +..+++|+.||+++.||++.|+...-+.  ..
T Consensus       109 fNeesSVv~SgsfD~s~r~wDCRS~s~ePiQildea~D~V~Si~v~--~heIvaGS~DGtvRtydiR~G~l~sDy~--g~  184 (307)
T KOG0316|consen  109 FNEESSVVASGSFDSSVRLWDCRSRSFEPIQILDEAKDGVSSIDVA--EHEIVAGSVDGTVRTYDIRKGTLSSDYF--GH  184 (307)
T ss_pred             ecCcceEEEeccccceeEEEEcccCCCCccchhhhhcCceeEEEec--ccEEEeeccCCcEEEEEeecceeehhhc--CC
Confidence                           899999875  46788888888999999886  6789999999999999999998766654  56


Q ss_pred             CeeeEEEccCCCEEEEEeCCCeEEEEeCCC----------------------CCccEEEEEcCCCeEEEEecCCCceeeE
Q 042146          144 PVTAIDFNRDGTMIVTSSYDGLYRILDAST----------------------PNGKFILVGTLDNTLRLWNYSTRKILKT  201 (262)
Q Consensus       144 ~v~~~~~~~~~~~l~~~~~dg~i~~~d~~~----------------------~~~~~l~~~~~dg~i~i~d~~~~~~~~~  201 (262)
                      ||+++.|+++++..++++.|+++++.|-.+                      .....+++|++||.+++||+.....+..
T Consensus       185 pit~vs~s~d~nc~La~~l~stlrLlDk~tGklL~sYkGhkn~eykldc~l~qsdthV~sgSEDG~Vy~wdLvd~~~~sk  264 (307)
T KOG0316|consen  185 PITSVSFSKDGNCSLASSLDSTLRLLDKETGKLLKSYKGHKNMEYKLDCCLNQSDTHVFSGSEDGKVYFWDLVDETQISK  264 (307)
T ss_pred             cceeEEecCCCCEEEEeeccceeeecccchhHHHHHhcccccceeeeeeeecccceeEEeccCCceEEEEEeccceeeee
Confidence            899999999999999999999999999776                      4567899999999999999999999988


Q ss_pred             EeccCCceeEEEEEEecCCCeeEEccccc-eEEEEEcCCCCeEEEeeecCCCcEEEEee
Q 042146          202 YSGYTNSKYCISSTFSVTNGKYIVSHRDP-VISVASHPAKNIIASGALDNDRTMKIWTQ  259 (262)
Q Consensus       202 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-v~~~~~~p~~~~l~~~~~d~d~~i~iw~~  259 (262)
                      ++.                      +... |.+++++|....|+++.   ++.+..|--
T Consensus       265 ~~~----------------------~~~v~v~dl~~hp~~~~f~~A~---~~~~~~~~~  298 (307)
T KOG0316|consen  265 LSV----------------------VSTVIVTDLSCHPTMDDFITAT---GHGDLFWYQ  298 (307)
T ss_pred             ecc----------------------CCceeEEeeecccCccceeEec---CCceeceee
Confidence            886                      5555 89999999998888885   566777753

>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=99.97  E-value=1.2e-29  Score=198.48  Aligned_cols=225  Identities=23%  Similarity=0.367  Sum_probs=182.0

Q ss_pred             ceeeecc--cccceecccCcCceEEEEEccCCCeEEEecCCCeEEEeecCCCCCCCCCCCCCCccccCCccccccce---
Q 042146            6 SLESFRP--YTLTQTLNGHLRAVSYVKFSHDGRLLTSSSAEKTLLTYSLSSISNFDSTPPSPLQKFTGHEQGISDLA---   80 (262)
Q Consensus         6 ~i~~~~~--~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~---   80 (262)
                      .+..|..  .........+...|+++.|+++|.+|++|..+|.|.|||.............       |...+.+++   
T Consensus       198 ~vylW~~~s~~v~~l~~~~~~~vtSv~ws~~G~~LavG~~~g~v~iwD~~~~k~~~~~~~~-------h~~rvg~laW~~  270 (484)
T KOG0305|consen  198 SVYLWSASSGSVTELCSFGEELVTSVKWSPDGSHLAVGTSDGTVQIWDVKEQKKTRTLRGS-------HASRVGSLAWNS  270 (484)
T ss_pred             eEEEEecCCCceEEeEecCCCceEEEEECCCCCEEEEeecCCeEEEEehhhccccccccCC-------cCceeEEEeccC
Confidence            4555542  3333333444889999999999999999999999999998765443332221       333332222   


Q ss_pred             ----------eEEEEecCCCcccee-cccCCcceEEEEEeCCCCEEEeecCCCeEEEEECCCCeeeeeeecCCCCeeeEE
Q 042146           81 ----------TIRLWDVPTATSLKT-LIGHTNYVFCINFNPQSNRIVSDTFNETIRIWDIKTGKCLKVLPAHSDPVTAID  149 (262)
Q Consensus        81 ----------~i~v~d~~~~~~~~~-~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~  149 (262)
                                .|..+|++..+.... +.+|...|..++|++++.++|+|+.|+.+.|||.....++..+..|...|.+++
T Consensus       271 ~~lssGsr~~~I~~~dvR~~~~~~~~~~~H~qeVCgLkws~d~~~lASGgnDN~~~Iwd~~~~~p~~~~~~H~aAVKA~a  350 (484)
T KOG0305|consen  271 SVLSSGSRDGKILNHDVRISQHVVSTLQGHRQEVCGLKWSPDGNQLASGGNDNVVFIWDGLSPEPKFTFTEHTAAVKALA  350 (484)
T ss_pred             ceEEEecCCCcEEEEEEecchhhhhhhhcccceeeeeEECCCCCeeccCCCccceEeccCCCccccEEEeccceeeeEee
Confidence                      889999988776665 889999999999999999999999999999999988888999999999999999


Q ss_pred             Ecc-CCCEEEEEe--CCCeEEEEeCCC-------------------CCccEEEE--EcCCCeEEEEecCCCceeeEEecc
Q 042146          150 FNR-DGTMIVTSS--YDGLYRILDAST-------------------PNGKFILV--GTLDNTLRLWNYSTRKILKTYSGY  205 (262)
Q Consensus       150 ~~~-~~~~l~~~~--~dg~i~~~d~~~-------------------~~~~~l~~--~~~dg~i~i~d~~~~~~~~~~~~~  205 (262)
                      |+| ...+||+|+  .|++|++||...                   +..+.|++  |..+..|.||+..+.+.+..+.+ 
T Consensus       351 wcP~q~~lLAsGGGs~D~~i~fwn~~~g~~i~~vdtgsQVcsL~Wsk~~kEi~sthG~s~n~i~lw~~ps~~~~~~l~g-  429 (484)
T KOG0305|consen  351 WCPWQSGLLATGGGSADRCIKFWNTNTGARIDSVDTGSQVCSLIWSKKYKELLSTHGYSENQITLWKYPSMKLVAELLG-  429 (484)
T ss_pred             eCCCccCceEEcCCCcccEEEEEEcCCCcEecccccCCceeeEEEcCCCCEEEEecCCCCCcEEEEeccccceeeeecC-
Confidence            999 667888875  799999999887                   33433444  34667899999999888888887 


Q ss_pred             CCceeEEEEEEecCCCeeEEccccceEEEEEcCCCCeEEEeeecCCCcEEEEeecc
Q 042146          206 TNSKYCISSTFSVTNGKYIVSHRDPVISVASHPAKNIIASGALDNDRTMKIWTQEK  261 (262)
Q Consensus       206 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~d~d~~i~iw~~~~  261 (262)
                                           |..+|..++++|+|..+++|+  .|.++++|++-.
T Consensus       430 ---------------------H~~RVl~la~SPdg~~i~t~a--~DETlrfw~~f~  462 (484)
T KOG0305|consen  430 ---------------------HTSRVLYLALSPDGETIVTGA--ADETLRFWNLFD  462 (484)
T ss_pred             ---------------------CcceeEEEEECCCCCEEEEec--ccCcEEeccccC
Confidence                                 999999999999999999999  899999999743

>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.97  E-value=7.3e-30  Score=199.33  Aligned_cols=209  Identities=22%  Similarity=0.398  Sum_probs=171.8

Q ss_pred             CceeeecccccceecccCcCceEEEEEccCCCeEEEecCCCeEEEeecCCCCCCCC--CCCCCCccccCCcccc-----c
Q 042146            5 RSLESFRPYTLTQTLNGHLRAVSYVKFSHDGRLLTSSSAEKTLLTYSLSSISNFDS--TPPSPLQKFTGHEQGI-----S   77 (262)
Q Consensus         5 ~~i~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~--~~~~~~~~~~~~~~~v-----~   77 (262)
                      -.||++++..+++.++.-.-||++..|-+..+++++|+.|..|++|++.+......  ..+..+..+..|+...     +
T Consensus        37 V~IWnyetqtmVksfeV~~~PvRa~kfiaRknWiv~GsDD~~IrVfnynt~ekV~~FeAH~DyIR~iavHPt~P~vLtsS  116 (794)
T KOG0276|consen   37 VQIWNYETQTMVKSFEVSEVPVRAAKFIARKNWIVTGSDDMQIRVFNYNTGEKVKTFEAHSDYIRSIAVHPTLPYVLTSS  116 (794)
T ss_pred             eEEEecccceeeeeeeecccchhhheeeeccceEEEecCCceEEEEecccceeeEEeeccccceeeeeecCCCCeEEecC
Confidence            35677788999999999999999999999999999999999999998766443321  1223333333333222     1


Q ss_pred             cceeEEEEecCC-CccceecccCCcceEEEEEeC-CCCEEEeecCCCeEEEEECCCCeeeeeeecCCCCeeeEEEccCC-
Q 042146           78 DLATIRLWDVPT-ATSLKTLIGHTNYVFCINFNP-QSNRIVSDTFNETIRIWDIKTGKCLKVLPAHSDPVTAIDFNRDG-  154 (262)
Q Consensus        78 ~~~~i~v~d~~~-~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~-  154 (262)
                      ....|++||.+. ..+.+++.+|...|.+++|+| |.+.+++++-|++|+||.+.+..+..++++|...|+|+.|-+.| 
T Consensus       117 DDm~iKlW~we~~wa~~qtfeGH~HyVMqv~fnPkD~ntFaS~sLDrTVKVWslgs~~~nfTl~gHekGVN~Vdyy~~gd  196 (794)
T KOG0276|consen  117 DDMTIKLWDWENEWACEQTFEGHEHYVMQVAFNPKDPNTFASASLDRTVKVWSLGSPHPNFTLEGHEKGVNCVDYYTGGD  196 (794)
T ss_pred             CccEEEEeeccCceeeeeEEcCcceEEEEEEecCCCccceeeeeccccEEEEEcCCCCCceeeeccccCcceEEeccCCC
Confidence            222899999976 457788999999999999999 88899999999999999999999999999999999999999854 


Q ss_pred             -CEEEEEeCCCeEEEEeCCC--------------------CCccEEEEEcCCCeEEEEecCCCceeeEEeccCCceeEEE
Q 042146          155 -TMIVTSSYDGLYRILDAST--------------------PNGKFILVGTLDNTLRLWNYSTRKILKTYSGYTNSKYCIS  213 (262)
Q Consensus       155 -~~l~~~~~dg~i~~~d~~~--------------------~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~  213 (262)
                       .+|++|+.|.++++||..+                    |.-+.+++|++||+++||+..+-++..++.-..+.++|++
T Consensus       197 kpylIsgaDD~tiKvWDyQtk~CV~TLeGHt~Nvs~v~fhp~lpiiisgsEDGTvriWhs~Ty~lE~tLn~gleRvW~I~  276 (794)
T KOG0276|consen  197 KPYLISGADDLTIKVWDYQTKSCVQTLEGHTNNVSFVFFHPELPIIISGSEDGTVRIWNSKTYKLEKTLNYGLERVWCIA  276 (794)
T ss_pred             cceEEecCCCceEEEeecchHHHHHHhhcccccceEEEecCCCcEEEEecCCccEEEecCcceehhhhhhcCCceEEEEe
Confidence             5999999999999999876                    6678999999999999999999888888876444444443

>KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.97  E-value=1.9e-30  Score=182.08  Aligned_cols=199  Identities=23%  Similarity=0.393  Sum_probs=168.8

Q ss_pred             CCCCceeeec---ccccceecccCcCceEEEEEccC-CCeEEEecCCCeEEEeecCCCCCCCCCCCCCCccccCCccccc
Q 042146            2 SSDRSLESFR---PYTLTQTLNGHLRAVSYVKFSHD-GRLLTSSSAEKTLLTYSLSSISNFDSTPPSPLQKFTGHEQGIS   77 (262)
Q Consensus         2 s~d~~i~~~~---~~~~~~~~~~h~~~v~~~~~~~~-~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~   77 (262)
                      +-||+++.|.   +-.+++.++.|..+|.++.|++. ++.++++|.|++|++|+.                         
T Consensus        80 ~GDGSLrl~d~~~~s~Pi~~~kEH~~EV~Svdwn~~~r~~~ltsSWD~TiKLW~~-------------------------  134 (311)
T KOG0277|consen   80 SGDGSLRLFDLTMPSKPIHKFKEHKREVYSVDWNTVRRRIFLTSSWDGTIKLWDP-------------------------  134 (311)
T ss_pred             ecCceEEEeccCCCCcchhHHHhhhhheEEeccccccceeEEeeccCCceEeecC-------------------------
Confidence            4699999996   55689999999999999999994 567888899999988854                         


Q ss_pred             cceeEEEEecCCCccceecccCCcceEEEEEeC-CCCEEEeecCCCeEEEEECCCCeeeeeeecCCCCeeeEEEcc-CCC
Q 042146           78 DLATIRLWDVPTATSLKTLIGHTNYVFCINFNP-QSNRIVSDTFNETIRIWDIKTGKCLKVLPAHSDPVTAIDFNR-DGT  155 (262)
Q Consensus        78 ~~~~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~-~~~  155 (262)
                                ..++.+.++.+|...|...+|+| .+++++++|.|+++++||++..-....+..|...+.++.|+. +.+
T Consensus       135 ----------~r~~Sv~Tf~gh~~~Iy~a~~sp~~~nlfas~Sgd~~l~lwdvr~~gk~~~i~ah~~Eil~cdw~ky~~~  204 (311)
T KOG0277|consen  135 ----------NRPNSVQTFNGHNSCIYQAAFSPHIPNLFASASGDGTLRLWDVRSPGKFMSIEAHNSEILCCDWSKYNHN  204 (311)
T ss_pred             ----------CCCcceEeecCCccEEEEEecCCCCCCeEEEccCCceEEEEEecCCCceeEEEeccceeEeecccccCCc
Confidence                      45667788999999999999999 788999999999999999986444444889999999999998 778


Q ss_pred             EEEEEeCCCeEEEEeCCC----------------------CCccEEEEEcCCCeEEEEecCCCc-eeeEEeccCCceeEE
Q 042146          156 MIVTSSYDGLYRILDAST----------------------PNGKFILVGTLDNTLRLWNYSTRK-ILKTYSGYTNSKYCI  212 (262)
Q Consensus       156 ~l~~~~~dg~i~~~d~~~----------------------~~~~~l~~~~~dg~i~i~d~~~~~-~~~~~~~~~~~~~~~  212 (262)
                      .+++|+.|+.|+.||++.                      .....|++++.|-+++|||...+. ++.+...        
T Consensus       205 vl~Tg~vd~~vr~wDir~~r~pl~eL~gh~~AVRkvk~Sph~~~lLaSasYDmT~riw~~~~~ds~~e~~~~--------  276 (311)
T KOG0277|consen  205 VLATGGVDNLVRGWDIRNLRTPLFELNGHGLAVRKVKFSPHHASLLASASYDMTVRIWDPERQDSAIETVDH--------  276 (311)
T ss_pred             EEEecCCCceEEEEehhhccccceeecCCceEEEEEecCcchhhHhhhccccceEEecccccchhhhhhhhc--------
Confidence            999999999999999987                      345679999999999999998544 4444443        


Q ss_pred             EEEEecCCCeeEEccccceEEEEEcCC-CCeEEEeeecCCCcEEEEee
Q 042146          213 SSTFSVTNGKYIVSHRDPVISVASHPA-KNIIASGALDNDRTMKIWTQ  259 (262)
Q Consensus       213 ~~~~~~~~~~~~~~~~~~v~~~~~~p~-~~~l~~~~~d~d~~i~iw~~  259 (262)
                                    |.+-+..+.|++. ..++|+++  =|+.++||+.
T Consensus       277 --------------HtEFv~g~Dws~~~~~~vAs~g--WDe~l~Vw~p  308 (311)
T KOG0277|consen  277 --------------HTEFVCGLDWSLFDPGQVASTG--WDELLYVWNP  308 (311)
T ss_pred             --------------cceEEeccccccccCceeeecc--cccceeeecc
Confidence                          7888899999984 56899999  4699999984

>PLN00181 protein SPA1-RELATED; Provisional

Probab=99.97  E-value=8.7e-29  Score=213.26  Aligned_cols=210  Identities=18%  Similarity=0.279  Sum_probs=167.4

Q ss_pred             CCCCceeeec--ccccceecccCcCceEEEEEcc-CCCeEEEecCCCeEEEeecCCCCCCCCCCCCCCccccCCcccccc
Q 042146            2 SSDRSLESFR--PYTLTQTLNGHLRAVSYVKFSH-DGRLLTSSSAEKTLLTYSLSSISNFDSTPPSPLQKFTGHEQGISD   78 (262)
Q Consensus         2 s~d~~i~~~~--~~~~~~~~~~h~~~v~~~~~~~-~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~   78 (262)
                      +.|++++.|+  ..+.+..+.+|.+.|++++|+| ++.+|++|+.|++|++||+.                         
T Consensus       552 ~~Dg~v~lWd~~~~~~~~~~~~H~~~V~~l~~~p~~~~~L~Sgs~Dg~v~iWd~~-------------------------  606 (793)
T PLN00181        552 NFEGVVQVWDVARSQLVTEMKEHEKRVWSIDYSSADPTLLASGSDDGSVKLWSIN-------------------------  606 (793)
T ss_pred             eCCCeEEEEECCCCeEEEEecCCCCCEEEEEEcCCCCCEEEEEcCCCEEEEEECC-------------------------
Confidence            3588988886  4567888999999999999997 78999999999999999664                         


Q ss_pred             ceeEEEEecCCCccceecccCCcceEEEEEeC-CCCEEEeecCCCeEEEEECCCCe-eeeeeecCCCCeeeEEEccCCCE
Q 042146           79 LATIRLWDVPTATSLKTLIGHTNYVFCINFNP-QSNRIVSDTFNETIRIWDIKTGK-CLKVLPAHSDPVTAIDFNRDGTM  156 (262)
Q Consensus        79 ~~~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~dg~i~vwd~~~~~-~~~~~~~~~~~v~~~~~~~~~~~  156 (262)
                                ++..+..+.. ...+.++.|++ ++.++++|+.||.|++||+++.+ ++..+.+|...|.++.|. ++.+
T Consensus       607 ----------~~~~~~~~~~-~~~v~~v~~~~~~g~~latgs~dg~I~iwD~~~~~~~~~~~~~h~~~V~~v~f~-~~~~  674 (793)
T PLN00181        607 ----------QGVSIGTIKT-KANICCVQFPSESGRSLAFGSADHKVYYYDLRNPKLPLCTMIGHSKTVSYVRFV-DSST  674 (793)
T ss_pred             ----------CCcEEEEEec-CCCeEEEEEeCCCCCEEEEEeCCCeEEEEECCCCCccceEecCCCCCEEEEEEe-CCCE
Confidence                      3344444443 35688999965 79999999999999999998765 466778899999999997 6789


Q ss_pred             EEEEeCCCeEEEEeCCC--------------------------CCccEEEEEcCCCeEEEEecCCCceeeEEeccCCcee
Q 042146          157 IVTSSYDGLYRILDAST--------------------------PNGKFILVGTLDNTLRLWNYSTRKILKTYSGYTNSKY  210 (262)
Q Consensus       157 l~~~~~dg~i~~~d~~~--------------------------~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~  210 (262)
                      |++++.|++|++||++.                          +++.+|++|+.|+.|++|+.....++..+........
T Consensus       675 lvs~s~D~~ikiWd~~~~~~~~~~~~l~~~~gh~~~i~~v~~s~~~~~lasgs~D~~v~iw~~~~~~~~~s~~~~~~~~~  754 (793)
T PLN00181        675 LVSSSTDNTLKLWDLSMSISGINETPLHSFMGHTNVKNFVGLSVSDGYIATGSETNEVFVYHKAFPMPVLSYKFKTIDPV  754 (793)
T ss_pred             EEEEECCCEEEEEeCCCCccccCCcceEEEcCCCCCeeEEEEcCCCCEEEEEeCCCEEEEEECCCCCceEEEecccCCcc
Confidence            99999999999999862                          5788999999999999999877665544432111000


Q ss_pred             EEEEEEecCCCeeEEccccceEEEEEcCCCCeEEEeeecCCCcEEEEee
Q 042146          211 CISSTFSVTNGKYIVSHRDPVISVASHPAKNIIASGALDNDRTMKIWTQ  259 (262)
Q Consensus       211 ~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~d~d~~i~iw~~  259 (262)
                               .+.....+...|.+++|+|++..|++|+  .||.|+||++
T Consensus       755 ---------~~~~~~~~~~~V~~v~ws~~~~~lva~~--~dG~I~i~~~  792 (793)
T PLN00181        755 ---------SGLEVDDASQFISSVCWRGQSSTLVAAN--STGNIKILEM  792 (793)
T ss_pred             ---------cccccCCCCcEEEEEEEcCCCCeEEEec--CCCcEEEEec
Confidence                     0001112667899999999999999999  8999999986

>KOG2096 consensus WD40 repeat protein [General function prediction only]

Probab=99.97  E-value=8.5e-30  Score=184.38  Aligned_cols=218  Identities=23%  Similarity=0.397  Sum_probs=168.2

Q ss_pred             cceecccCcCceEEEEEccCCCeEEEecCCCeEEEeecCCCCCC---------CCCCCCCCcccc---------------
Q 042146           15 LTQTLNGHLRAVSYVKFSHDGRLLTSSSAEKTLLTYSLSSISNF---------DSTPPSPLQKFT---------------   70 (262)
Q Consensus        15 ~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~---------~~~~~~~~~~~~---------------   70 (262)
                      .+..+++|.+.|++++|+.||++|||++.|++|++|++......         +...+..+...+               
T Consensus        78 ~~~~LKgH~~~vt~~~FsSdGK~lat~~~Dr~Ir~w~~~DF~~~eHr~~R~nve~dhpT~V~FapDc~s~vv~~~~g~~l  157 (420)
T KOG2096|consen   78 NVSVLKGHKKEVTDVAFSSDGKKLATISGDRSIRLWDVRDFENKEHRCIRQNVEYDHPTRVVFAPDCKSVVVSVKRGNKL  157 (420)
T ss_pred             hhhhhhccCCceeeeEEcCCCceeEEEeCCceEEEEecchhhhhhhhHhhccccCCCceEEEECCCcceEEEEEccCCEE
Confidence            34578899999999999999999999999999999998753211         111110000000               


Q ss_pred             ---------------------------CCccccccce---------------eEEEEecCCCccceecccCCcceEEEEE
Q 042146           71 ---------------------------GHEQGISDLA---------------TIRLWDVPTATSLKTLIGHTNYVFCINF  108 (262)
Q Consensus        71 ---------------------------~~~~~v~~~~---------------~i~v~d~~~~~~~~~~~~~~~~v~~~~~  108 (262)
                                                 -|...+..++               .|.+|++. |+.+..+......-...++
T Consensus       158 ~vyk~~K~~dG~~~~~~v~~D~~~f~~kh~v~~i~iGiA~~~k~imsas~dt~i~lw~lk-Gq~L~~idtnq~~n~~aav  236 (420)
T KOG2096|consen  158 CVYKLVKKTDGSGSHHFVHIDNLEFERKHQVDIINIGIAGNAKYIMSASLDTKICLWDLK-GQLLQSIDTNQSSNYDAAV  236 (420)
T ss_pred             EEEEeeecccCCCCcccccccccccchhcccceEEEeecCCceEEEEecCCCcEEEEecC-Cceeeeeccccccccceee
Confidence                                       0000000000               89999997 8888888777777788899


Q ss_pred             eCCCCEEEeecCCCeEEEEECC---CC-----eeeeeeecCCCCeeeEEEccCCCEEEEEeCCCeEEEEeCCC-------
Q 042146          109 NPQSNRIVSDTFNETIRIWDIK---TG-----KCLKVLPAHSDPVTAIDFNRDGTMIVTSSYDGLYRILDAST-------  173 (262)
Q Consensus       109 ~~~~~~l~~~~~dg~i~vwd~~---~~-----~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~d~~~-------  173 (262)
                      +|+|+++++++..--|++|.+-   .|     +.+..+++|...|..++|+|++..+++.+.||++++||+..       
T Consensus       237 SP~GRFia~~gFTpDVkVwE~~f~kdG~fqev~rvf~LkGH~saV~~~aFsn~S~r~vtvSkDG~wriwdtdVrY~~~qD  316 (420)
T KOG2096|consen  237 SPDGRFIAVSGFTPDVKVWEPIFTKDGTFQEVKRVFSLKGHQSAVLAAAFSNSSTRAVTVSKDGKWRIWDTDVRYEAGQD  316 (420)
T ss_pred             CCCCcEEEEecCCCCceEEEEEeccCcchhhhhhhheeccchhheeeeeeCCCcceeEEEecCCcEEEeeccceEecCCC
Confidence            9999999999999999999873   22     34567789999999999999999999999999999999765       


Q ss_pred             ------------------------CCccEEEEEcCCCeEEEEecCCCceeeEEeccCCceeEEEEEEecCCCeeEEcccc
Q 042146          174 ------------------------PNGKFILVGTLDNTLRLWNYSTRKILKTYSGYTNSKYCISSTFSVTNGKYIVSHRD  229 (262)
Q Consensus       174 ------------------------~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  229 (262)
                                              |+++.|+.+. ...+++|..++|+...+++..                     |.+
T Consensus       317 pk~Lk~g~~pl~aag~~p~RL~lsP~g~~lA~s~-gs~l~~~~se~g~~~~~~e~~---------------------h~~  374 (420)
T KOG2096|consen  317 PKILKEGSAPLHAAGSEPVRLELSPSGDSLAVSF-GSDLKVFASEDGKDYPELEDI---------------------HST  374 (420)
T ss_pred             chHhhcCCcchhhcCCCceEEEeCCCCcEEEeec-CCceEEEEcccCccchhHHHh---------------------hcC
Confidence                                    6777776654 346888888888776666531                     899


Q ss_pred             ceEEEEEcCCCCeEEEeeecCCCcEEEEe
Q 042146          230 PVISVASHPAKNIIASGALDNDRTMKIWT  258 (262)
Q Consensus       230 ~v~~~~~~p~~~~l~~~~~d~d~~i~iw~  258 (262)
                      .|.+++|+|+|++++|+|   |..+++..
T Consensus       375 ~Is~is~~~~g~~~atcG---dr~vrv~~  400 (420)
T KOG2096|consen  375 TISSISYSSDGKYIATCG---DRYVRVIR  400 (420)
T ss_pred             ceeeEEecCCCcEEeeec---ceeeeeec
Confidence            999999999999999996   78888865

>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=99.97  E-value=6.4e-29  Score=197.64  Aligned_cols=210  Identities=20%  Similarity=0.399  Sum_probs=175.6

Q ss_pred             Cceeeec--ccccceecccCcCceEEEEEccCCCeEEEecCCCeEEEeecCCCCCCCCCCCCCCccccCCccccccceeE
Q 042146            5 RSLESFR--PYTLTQTLNGHLRAVSYVKFSHDGRLLTSSSAEKTLLTYSLSSISNFDSTPPSPLQKFTGHEQGISDLATI   82 (262)
Q Consensus         5 ~~i~~~~--~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~i   82 (262)
                      |.+..|+  ...++.+.++|.+.|.+++.+||++.+++||.|.+|++||+.-.....   ...                -
T Consensus       434 Gel~vfdlaS~~l~Eti~AHdgaIWsi~~~pD~~g~vT~saDktVkfWdf~l~~~~~---gt~----------------~  494 (888)
T KOG0306|consen  434 GELQVFDLASASLVETIRAHDGAIWSISLSPDNKGFVTGSADKTVKFWDFKLVVSVP---GTQ----------------K  494 (888)
T ss_pred             CceEEEEeehhhhhhhhhccccceeeeeecCCCCceEEecCCcEEEEEeEEEEeccC---ccc----------------c
Confidence            4454554  566788889999999999999999999999999999999874321100   000                0


Q ss_pred             EEEecCCCccceecccCCcceEEEEEeCCCCEEEeecCCCeEEEEECCCCeeeeeeecCCCCeeeEEEccCCCEEEEEeC
Q 042146           83 RLWDVPTATSLKTLIGHTNYVFCINFNPQSNRIVSDTFNETIRIWDIKTGKCLKVLPAHSDPVTAIDFNRDGTMIVTSSY  162 (262)
Q Consensus        83 ~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~  162 (262)
                      ++..+.   ..+++ .-...|.|++++||+++|+++--|.+|+||-+.+.+....+.+|.-||.||..+||++++++|+.
T Consensus       495 k~lsl~---~~rtL-el~ddvL~v~~Spdgk~LaVsLLdnTVkVyflDtlKFflsLYGHkLPV~smDIS~DSklivTgSA  570 (888)
T KOG0306|consen  495 KVLSLK---HTRTL-ELEDDVLCVSVSPDGKLLAVSLLDNTVKVYFLDTLKFFLSLYGHKLPVLSMDISPDSKLIVTGSA  570 (888)
T ss_pred             eeeeec---cceEE-eccccEEEEEEcCCCcEEEEEeccCeEEEEEecceeeeeeecccccceeEEeccCCcCeEEeccC
Confidence            000110   01111 23467999999999999999999999999999999998899999999999999999999999999


Q ss_pred             CCeEEEEeCCC--------------------CCccEEEEEcCCCeEEEEecCCCceeeEEeccCCceeEEEEEEecCCCe
Q 042146          163 DGLYRILDAST--------------------PNGKFILVGTLDNTLRLWNYSTRKILKTYSGYTNSKYCISSTFSVTNGK  222 (262)
Q Consensus       163 dg~i~~~d~~~--------------------~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  222 (262)
                      |++|++|-+.-                    |....+.+++.|+.|+-||-...+.++.+.+                  
T Consensus       571 DKnVKiWGLdFGDCHKS~fAHdDSvm~V~F~P~~~~FFt~gKD~kvKqWDg~kFe~iq~L~~------------------  632 (888)
T KOG0306|consen  571 DKNVKIWGLDFGDCHKSFFAHDDSVMSVQFLPKTHLFFTCGKDGKVKQWDGEKFEEIQKLDG------------------  632 (888)
T ss_pred             CCceEEeccccchhhhhhhcccCceeEEEEcccceeEEEecCcceEEeechhhhhhheeecc------------------
Confidence            99999997654                    7888999999999999999999999999998                  


Q ss_pred             eEEccccceEEEEEcCCCCeEEEeeecCCCcEEEEeecc
Q 042146          223 YIVSHRDPVISVASHPAKNIIASGALDNDRTMKIWTQEK  261 (262)
Q Consensus       223 ~~~~~~~~v~~~~~~p~~~~l~~~~~d~d~~i~iw~~~~  261 (262)
                          |...|+|++.+|+|.+++++|  .|.+|++|....
T Consensus       633 ----H~~ev~cLav~~~G~~vvs~s--hD~sIRlwE~td  665 (888)
T KOG0306|consen  633 ----HHSEVWCLAVSPNGSFVVSSS--HDKSIRLWERTD  665 (888)
T ss_pred             ----chheeeeeEEcCCCCeEEecc--CCceeEeeeccC
Confidence                889999999999999999999  899999998764

>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=99.97  E-value=2.5e-29  Score=199.39  Aligned_cols=228  Identities=21%  Similarity=0.359  Sum_probs=191.0

Q ss_pred             CCCCceeee--cccccceecccCcCceEEEEE-ccCCCeEEEecCCCeEEEeecCCCCCCCCCCCCCCccccCCcccccc
Q 042146            2 SSDRSLESF--RPYTLTQTLNGHLRAVSYVKF-SHDGRLLTSSSAEKTLLTYSLSSISNFDSTPPSPLQKFTGHEQGISD   78 (262)
Q Consensus         2 s~d~~i~~~--~~~~~~~~~~~h~~~v~~~~~-~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~   78 (262)
                      .+|+.+..+  +..++.+.+-|..+.|.+|.| .|+.++||++++.+.+|+|++.+....         .+.+|...+.+
T Consensus       300 taeQnl~l~d~~~l~i~k~ivG~ndEI~Dm~~lG~e~~~laVATNs~~lr~y~~~~~~c~---------ii~GH~e~vlS  370 (775)
T KOG0319|consen  300 TAEQNLFLYDEDELTIVKQIVGYNDEILDMKFLGPEESHLAVATNSPELRLYTLPTSYCQ---------IIPGHTEAVLS  370 (775)
T ss_pred             EccceEEEEEccccEEehhhcCCchhheeeeecCCccceEEEEeCCCceEEEecCCCceE---------EEeCchhheee
Confidence            357777777  678888999999999999998 678899999999999999977653322         44555544433


Q ss_pred             ce---------------eEEEEecCCCc----cceecccCCcceEEEEEeC-CCCEEEeecCCCeEEEEECCCCee----
Q 042146           79 LA---------------TIRLWDVPTAT----SLKTLIGHTNYVFCINFNP-QSNRIVSDTFNETIRIWDIKTGKC----  134 (262)
Q Consensus        79 ~~---------------~i~v~d~~~~~----~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~dg~i~vwd~~~~~~----  134 (262)
                      +.               ++++|.++++.    ++....+|...|.+++++. ...+|+++|.|+++++|++...+.    
T Consensus       371 L~~~~~g~llat~sKD~svilWr~~~~~~~~~~~a~~~gH~~svgava~~~~~asffvsvS~D~tlK~W~l~~s~~~~~~  450 (775)
T KOG0319|consen  371 LDVWSSGDLLATGSKDKSVILWRLNNNCSKSLCVAQANGHTNSVGAVAGSKLGASFFVSVSQDCTLKLWDLPKSKETAFP  450 (775)
T ss_pred             eeecccCcEEEEecCCceEEEEEecCCcchhhhhhhhcccccccceeeecccCccEEEEecCCceEEEecCCCccccccc
Confidence            22               89999885443    3455678999999999987 456899999999999999976221    


Q ss_pred             -----eeeeecCCCCeeeEEEccCCCEEEEEeCCCeEEEEeCCC--------------------CCccEEEEEcCCCeEE
Q 042146          135 -----LKVLPAHSDPVTAIDFNRDGTMIVTSSYDGLYRILDAST--------------------PNGKFILVGTLDNTLR  189 (262)
Q Consensus       135 -----~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~d~~~--------------------~~~~~l~~~~~dg~i~  189 (262)
                           ......|...|++++++|+.+++++||.|++.++|++..                    +..+.+++++.|++|+
T Consensus       451 ~~~~~~~t~~aHdKdIN~Vaia~ndkLiAT~SqDktaKiW~le~~~l~~vLsGH~RGvw~V~Fs~~dq~laT~SgD~TvK  530 (775)
T KOG0319|consen  451 IVLTCRYTERAHDKDINCVAIAPNDKLIATGSQDKTAKIWDLEQLRLLGVLSGHTRGVWCVSFSKNDQLLATCSGDKTVK  530 (775)
T ss_pred             ceehhhHHHHhhcccccceEecCCCceEEecccccceeeecccCceEEEEeeCCccceEEEEeccccceeEeccCCceEE
Confidence                 113356999999999999999999999999999999887                    7788999999999999


Q ss_pred             EEecCCCceeeEEeccCCceeEEEEEEecCCCeeEEccccceEEEEEcCCCCeEEEeeecCCCcEEEEeeccC
Q 042146          190 LWNYSTRKILKTYSGYTNSKYCISSTFSVTNGKYIVSHRDPVISVASHPAKNIIASGALDNDRTMKIWTQEKE  262 (262)
Q Consensus       190 i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~d~d~~i~iw~~~~~  262 (262)
                      ||.+.+..++++|.+                      |...|..+.|-.++..|++++  .||-|++|+++++
T Consensus       531 IW~is~fSClkT~eG----------------------H~~aVlra~F~~~~~qliS~~--adGliKlWnikt~  579 (775)
T KOG0319|consen  531 IWSISTFSCLKTFEG----------------------HTSAVLRASFIRNGKQLISAG--ADGLIKLWNIKTN  579 (775)
T ss_pred             EEEeccceeeeeecC----------------------ccceeEeeeeeeCCcEEEecc--CCCcEEEEeccch
Confidence            999999999999998                      889999999999999999999  9999999999753

>KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton]

Probab=99.97  E-value=1.2e-28  Score=181.88  Aligned_cols=213  Identities=27%  Similarity=0.440  Sum_probs=168.0

Q ss_pred             ccccceecccCcCceEEEEEccCCCeEEEecCCCeEEEeecCCCCCCCCCCCCCCccccCCcccccc-------------
Q 042146           12 PYTLTQTLNGHLRAVSYVKFSHDGRLLTSSSAEKTLLTYSLSSISNFDSTPPSPLQKFTGHEQGISD-------------   78 (262)
Q Consensus        12 ~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~-------------   78 (262)
                      +.++++.+ .|..-|.++...  ++.+++|+.||.+++||......         ..+.+|...+..             
T Consensus        95 aP~pl~~~-~hdDWVSsv~~~--~~~IltgsYDg~~riWd~~Gk~~---------~~~~Ght~~ik~v~~v~~n~~~~~f  162 (423)
T KOG0313|consen   95 APKPLQCF-LHDDWVSSVKGA--SKWILTGSYDGTSRIWDLKGKSI---------KTIVGHTGPIKSVAWVIKNSSSCLF  162 (423)
T ss_pred             CCCccccc-cchhhhhhhccc--CceEEEeecCCeeEEEecCCceE---------EEEecCCcceeeeEEEecCCccceE
Confidence            44444444 378888888876  77999999999999999865322         222333333221             


Q ss_pred             -----ceeEEEEecCCCccc----eecccCCcceEEEEEeCCCCEEEeecCCCeEEEEECCC------------------
Q 042146           79 -----LATIRLWDVPTATSL----KTLIGHTNYVFCINFNPQSNRIVSDTFNETIRIWDIKT------------------  131 (262)
Q Consensus        79 -----~~~i~v~d~~~~~~~----~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~------------------  131 (262)
                           ..++++|.++.+...    +..++|+..|.++...+++..+++|+.|..|.+|+..+                  
T Consensus       163 vsas~Dqtl~Lw~~~~~~~~~~~~~~~~GHk~~V~sVsv~~sgtr~~SgS~D~~lkiWs~~~~~~~~~E~~s~~rrk~~~  242 (423)
T KOG0313|consen  163 VSASMDQTLRLWKWNVGENKVKALKVCRGHKRSVDSVSVDSSGTRFCSGSWDTMLKIWSVETDEEDELESSSNRRRKKQK  242 (423)
T ss_pred             EEecCCceEEEEEecCchhhhhHHhHhcccccceeEEEecCCCCeEEeecccceeeecccCCCccccccccchhhhhhhh
Confidence                 227888888776543    33458999999999999999999999999999999321                  


Q ss_pred             -------CeeeeeeecCCCCeeeEEEccCCCEEEEEeCCCeEEEEeCCC-------------------CCccEEEEEcCC
Q 042146          132 -------GKCLKVLPAHSDPVTAIDFNRDGTMIVTSSYDGLYRILDAST-------------------PNGKFILVGTLD  185 (262)
Q Consensus       132 -------~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~d~~~-------------------~~~~~l~~~~~d  185 (262)
                             +.++..+.+|..+|.++.|++ ...+++++.|.+|+.||+..                   +..++|++|+.|
T Consensus       243 ~~~~~~~r~P~vtl~GHt~~Vs~V~w~d-~~v~yS~SwDHTIk~WDletg~~~~~~~~~ksl~~i~~~~~~~Ll~~gssd  321 (423)
T KOG0313|consen  243 REKEGGTRTPLVTLEGHTEPVSSVVWSD-ATVIYSVSWDHTIKVWDLETGGLKSTLTTNKSLNCISYSPLSKLLASGSSD  321 (423)
T ss_pred             hhhcccccCceEEecccccceeeEEEcC-CCceEeecccceEEEEEeecccceeeeecCcceeEeecccccceeeecCCC
Confidence                   235667789999999999998 77899999999999999887                   778899999999


Q ss_pred             CeEEEEecCCCc---eeeEEeccCCceeEEEEEEecCCCeeEEccccceEEEEEcCCCC-eEEEeeecCCCcEEEEeecc
Q 042146          186 NTLRLWNYSTRK---ILKTYSGYTNSKYCISSTFSVTNGKYIVSHRDPVISVASHPAKN-IIASGALDNDRTMKIWTQEK  261 (262)
Q Consensus       186 g~i~i~d~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~-~l~~~~~d~d~~i~iw~~~~  261 (262)
                      ..|++||.+++.   ..+++.+                      |...|.++.|+|... +|++++  .|+++++||++.
T Consensus       322 r~irl~DPR~~~gs~v~~s~~g----------------------H~nwVssvkwsp~~~~~~~S~S--~D~t~klWDvRS  377 (423)
T KOG0313|consen  322 RHIRLWDPRTGDGSVVSQSLIG----------------------HKNWVSSVKWSPTNEFQLVSGS--YDNTVKLWDVRS  377 (423)
T ss_pred             CceeecCCCCCCCceeEEeeec----------------------chhhhhheecCCCCceEEEEEe--cCCeEEEEEecc
Confidence            999999999864   2344444                      999999999999765 577888  899999999864

>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]

Probab=99.97  E-value=2.1e-29  Score=184.44  Aligned_cols=173  Identities=27%  Similarity=0.541  Sum_probs=155.5

Q ss_pred             CcCceEEEEEccCCCeEEEecCCCeEEEeecCCCCCCCCCCCCCCccccCCccccccceeEEEEecCCCccceecccCCc
Q 042146           22 HLRAVSYVKFSHDGRLLTSSSAEKTLLTYSLSSISNFDSTPPSPLQKFTGHEQGISDLATIRLWDVPTATSLKTLIGHTN  101 (262)
Q Consensus        22 h~~~v~~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~i~v~d~~~~~~~~~~~~~~~  101 (262)
                      ..+.|.|+.+.  ...+++|..|++|+|||.                                   .+..++..+.+|.+
T Consensus       196 ~skgVYClQYD--D~kiVSGlrDnTikiWD~-----------------------------------n~~~c~~~L~GHtG  238 (499)
T KOG0281|consen  196 NSKGVYCLQYD--DEKIVSGLRDNTIKIWDK-----------------------------------NSLECLKILTGHTG  238 (499)
T ss_pred             cCCceEEEEec--chhhhcccccCceEEecc-----------------------------------ccHHHHHhhhcCCC
Confidence            45779999984  456999999999888854                                   55678888999999


Q ss_pred             ceEEEEEeCCCCEEEeecCCCeEEEEECCCCeeeeeeecCCCCeeeEEEccCCCEEEEEeCCCeEEEEeCCC--------
Q 042146          102 YVFCINFNPQSNRIVSDTFNETIRIWDIKTGKCLKVLPAHSDPVTAIDFNRDGTMIVTSSYDGLYRILDAST--------  173 (262)
Q Consensus       102 ~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~d~~~--------  173 (262)
                      .|.|+.+.  .+.+++|++|.+|++||.++++++.++-.|...|..+.|+  ..++++++.|.++.+||+.+        
T Consensus       239 SVLCLqyd--~rviisGSSDsTvrvWDv~tge~l~tlihHceaVLhlrf~--ng~mvtcSkDrsiaVWdm~sps~it~rr  314 (499)
T KOG0281|consen  239 SVLCLQYD--ERVIVSGSSDSTVRVWDVNTGEPLNTLIHHCEAVLHLRFS--NGYMVTCSKDRSIAVWDMASPTDITLRR  314 (499)
T ss_pred             cEEeeecc--ceEEEecCCCceEEEEeccCCchhhHHhhhcceeEEEEEe--CCEEEEecCCceeEEEeccCchHHHHHH
Confidence            99999996  6699999999999999999999999999999999999998  45999999999999999987        


Q ss_pred             -------------CCccEEEEEcCCCeEEEEecCCCceeeEEeccCCceeEEEEEEecCCCeeEEccccceEEEEEcCCC
Q 042146          174 -------------PNGKFILVGTLDNTLRLWNYSTRKILKTYSGYTNSKYCISSTFSVTNGKYIVSHRDPVISVASHPAK  240 (262)
Q Consensus       174 -------------~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~  240 (262)
                                   -+.+++++++.|.+|++|++.+++.++++.+                      |+..|.|+.+.  +
T Consensus       315 VLvGHrAaVNvVdfd~kyIVsASgDRTikvW~~st~efvRtl~g----------------------HkRGIAClQYr--~  370 (499)
T KOG0281|consen  315 VLVGHRAAVNVVDFDDKYIVSASGDRTIKVWSTSTCEFVRTLNG----------------------HKRGIACLQYR--D  370 (499)
T ss_pred             HHhhhhhheeeeccccceEEEecCCceEEEEeccceeeehhhhc----------------------ccccceehhcc--C
Confidence                         4778999999999999999999999999998                      88888888875  8


Q ss_pred             CeEEEeeecCCCcEEEEeecc
Q 042146          241 NIIASGALDNDRTMKIWTQEK  261 (262)
Q Consensus       241 ~~l~~~~~d~d~~i~iw~~~~  261 (262)
                      +++++|+  .|.+|++|+++.
T Consensus       371 rlvVSGS--SDntIRlwdi~~  389 (499)
T KOG0281|consen  371 RLVVSGS--SDNTIRLWDIEC  389 (499)
T ss_pred             eEEEecC--CCceEEEEeccc
Confidence            9999999  899999999864

>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]

Probab=99.97  E-value=2.8e-29  Score=187.02  Aligned_cols=222  Identities=26%  Similarity=0.498  Sum_probs=183.7

Q ss_pred             CCCceeeec----ccccceecccCcCceEEEEEccCCCeEEEecCCCeEEEeecCCCCCCCCCCCCCCccccCCcccccc
Q 042146            3 SDRSLESFR----PYTLTQTLNGHLRAVSYVKFSHDGRLLTSSSAEKTLLTYSLSSISNFDSTPPSPLQKFTGHEQGISD   78 (262)
Q Consensus         3 ~d~~i~~~~----~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~   78 (262)
                      +|+.|..|+    ...++.++.+-.++|+++.|.++++++++++.|+.+++|++.....        ...+.+|...+.+
T Consensus       195 ~Dr~Ik~W~v~~~k~~~~~tLaGs~g~it~~d~d~~~~~~iAas~d~~~r~Wnvd~~r~--------~~TLsGHtdkVt~  266 (459)
T KOG0288|consen  195 SDRIIKLWNVLGEKSELISTLAGSLGNITSIDFDSDNKHVIAASNDKNLRLWNVDSLRL--------RHTLSGHTDKVTA  266 (459)
T ss_pred             hhhhhhhhhcccchhhhhhhhhccCCCcceeeecCCCceEEeecCCCceeeeeccchhh--------hhhhcccccceee
Confidence            466677775    3347888889999999999999999999999999999998876433        2333334333332


Q ss_pred             c---------------eeEEEEecCCCccceecccCCcceEEEEEeCCCCEEEeecCCCeEEEEECCCCeeeeeeecCCC
Q 042146           79 L---------------ATIRLWDVPTATSLKTLIGHTNYVFCINFNPQSNRIVSDTFNETIRIWDIKTGKCLKVLPAHSD  143 (262)
Q Consensus        79 ~---------------~~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~  143 (262)
                      +               .+|+.||+....+.+++- ....+..|...  ...+++|-.|++|++||.++..+...+..+. 
T Consensus       267 ak~~~~~~~vVsgs~DRtiK~WDl~k~~C~kt~l-~~S~cnDI~~~--~~~~~SgH~DkkvRfwD~Rs~~~~~sv~~gg-  342 (459)
T KOG0288|consen  267 AKFKLSHSRVVSGSADRTIKLWDLQKAYCSKTVL-PGSQCNDIVCS--ISDVISGHFDKKVRFWDIRSADKTRSVPLGG-  342 (459)
T ss_pred             ehhhccccceeeccccchhhhhhhhhhheecccc-ccccccceEec--ceeeeecccccceEEEeccCCceeeEeecCc-
Confidence            2               289999999888777654 23456666665  5668999999999999999999999987654 


Q ss_pred             CeeeEEEccCCCEEEEEeCCCeEEEEeCCC------------------------CCccEEEEEcCCCeEEEEecCCCcee
Q 042146          144 PVTAIDFNRDGTMIVTSSYDGLYRILDAST------------------------PNGKFILVGTLDNTLRLWNYSTRKIL  199 (262)
Q Consensus       144 ~v~~~~~~~~~~~l~~~~~dg~i~~~d~~~------------------------~~~~~l~~~~~dg~i~i~d~~~~~~~  199 (262)
                      .|+++..++++..+.+++.|.++.+.|++.                        |++.|+++|+.||.|+||++.++++.
T Consensus       343 ~vtSl~ls~~g~~lLsssRDdtl~viDlRt~eI~~~~sA~g~k~asDwtrvvfSpd~~YvaAGS~dgsv~iW~v~tgKlE  422 (459)
T KOG0288|consen  343 RVTSLDLSMDGLELLSSSRDDTLKVIDLRTKEIRQTFSAEGFKCASDWTRVVFSPDGSYVAAGSADGSVYIWSVFTGKLE  422 (459)
T ss_pred             ceeeEeeccCCeEEeeecCCCceeeeecccccEEEEeeccccccccccceeEECCCCceeeeccCCCcEEEEEccCceEE
Confidence            899999999999999999999999999987                        99999999999999999999999999


Q ss_pred             eEEeccCCceeEEEEEEecCCCeeEEccccceEEEEEcCCCCeEEEeeecCCCcEEEEe
Q 042146          200 KTYSGYTNSKYCISSTFSVTNGKYIVSHRDPVISVASHPAKNIIASGALDNDRTMKIWT  258 (262)
Q Consensus       200 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~d~d~~i~iw~  258 (262)
                      ..+....                    ....|++++|+|.|..|++++  .++.+.+|.
T Consensus       423 ~~l~~s~--------------------s~~aI~s~~W~~sG~~Llsad--k~~~v~lW~  459 (459)
T KOG0288|consen  423 KVLSLST--------------------SNAAITSLSWNPSGSGLLSAD--KQKAVTLWT  459 (459)
T ss_pred             EEeccCC--------------------CCcceEEEEEcCCCchhhccc--CCcceEecC
Confidence            9887632                    223699999999999999999  899999994

>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]

Probab=99.96  E-value=8.4e-29  Score=181.86  Aligned_cols=233  Identities=16%  Similarity=0.250  Sum_probs=184.6

Q ss_pred             CCCCceeeec--ccccceecccCcCceEEEEEccCCCeEEEecCCCeEEEeecCCCCCCCCCCCCCCccccC---Ccccc
Q 042146            2 SSDRSLESFR--PYTLTQTLNGHLRAVSYVKFSHDGRLLTSSSAEKTLLTYSLSSISNFDSTPPSPLQKFTG---HEQGI   76 (262)
Q Consensus         2 s~d~~i~~~~--~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~---~~~~v   76 (262)
                      |.||.+..|+  ......++++|.+.|..+++..  ..+++++.|++|+.|.++..............-+..   .....
T Consensus        86 s~DG~VkiWnlsqR~~~~~f~AH~G~V~Gi~v~~--~~~~tvgdDKtvK~wk~~~~p~~tilg~s~~~gIdh~~~~~~Fa  163 (433)
T KOG0268|consen   86 SCDGEVKIWNLSQRECIRTFKAHEGLVRGICVTQ--TSFFTVGDDKTVKQWKIDGPPLHTILGKSVYLGIDHHRKNSVFA  163 (433)
T ss_pred             ccCceEEEEehhhhhhhheeecccCceeeEEecc--cceEEecCCcceeeeeccCCcceeeecccccccccccccccccc
Confidence            5799888886  5668999999999999999977  679999999999999876521100000001111111   12223


Q ss_pred             ccceeEEEEecCCCccceecccCCcceEEEEEeC-CCCEEEeecCCCeEEEEECCCCeeeeeeecCCCCeeeEEEccCCC
Q 042146           77 SDLATIRLWDVPTATSLKTLIGHTNYVFCINFNP-QSNRIVSDTFNETIRIWDIKTGKCLKVLPAHSDPVTAIDFNRDGT  155 (262)
Q Consensus        77 ~~~~~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~  155 (262)
                      ++-..|.|||.+...++..+.-....|.++.|+| ....|+++..|+.|.+||++++++++.+. -...-+.++|+|.+.
T Consensus       164 TcGe~i~IWD~~R~~Pv~smswG~Dti~svkfNpvETsILas~~sDrsIvLyD~R~~~Pl~KVi-~~mRTN~IswnPeaf  242 (433)
T KOG0268|consen  164 TCGEQIDIWDEQRDNPVSSMSWGADSISSVKFNPVETSILASCASDRSIVLYDLRQASPLKKVI-LTMRTNTICWNPEAF  242 (433)
T ss_pred             ccCceeeecccccCCccceeecCCCceeEEecCCCcchheeeeccCCceEEEecccCCccceee-eeccccceecCcccc
Confidence            3444799999999999999988888999999999 55677888899999999999999988774 355668899999888


Q ss_pred             EEEEEeCCCeEEEEeCCC---------------------CCccEEEEEcCCCeEEEEecCCCceeeEEeccCCceeEEEE
Q 042146          156 MIVTSSYDGLYRILDAST---------------------PNGKFILVGTLDNTLRLWNYSTRKILKTYSGYTNSKYCISS  214 (262)
Q Consensus       156 ~l~~~~~dg~i~~~d~~~---------------------~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~  214 (262)
                      .|++|+.|..++.||++.                     |.|+.+++|+-|.+|+||..+.+.....+...         
T Consensus       243 nF~~a~ED~nlY~~DmR~l~~p~~v~~dhvsAV~dVdfsptG~EfvsgsyDksIRIf~~~~~~SRdiYhtk---------  313 (433)
T KOG0268|consen  243 NFVAANEDHNLYTYDMRNLSRPLNVHKDHVSAVMDVDFSPTGQEFVSGSYDKSIRIFPVNHGHSRDIYHTK---------  313 (433)
T ss_pred             ceeeccccccceehhhhhhcccchhhcccceeEEEeccCCCcchhccccccceEEEeecCCCcchhhhhHh---------
Confidence            999999999999999987                     88999999999999999999877654444210         


Q ss_pred             EEecCCCeeEEccccceEEEEEcCCCCeEEEeeecCCCcEEEEeec
Q 042146          215 TFSVTNGKYIVSHRDPVISVASHPAKNIIASGALDNDRTMKIWTQE  260 (262)
Q Consensus       215 ~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~d~d~~i~iw~~~  260 (262)
                                  --..|.++.||.|.+++++||  +|+.|++|+-+
T Consensus       314 ------------RMq~V~~Vk~S~Dskyi~SGS--dd~nvRlWka~  345 (433)
T KOG0268|consen  314 ------------RMQHVFCVKYSMDSKYIISGS--DDGNVRLWKAK  345 (433)
T ss_pred             ------------hhheeeEEEEeccccEEEecC--CCcceeeeecc
Confidence                        224689999999999999999  89999999864

>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=99.96  E-value=4e-28  Score=193.14  Aligned_cols=154  Identities=28%  Similarity=0.546  Sum_probs=127.3

Q ss_pred             eEEEEecCCCccceecccCCcceEEEEEeCCCCEEEeecCCCeEEEEECCCCeeeeeeecCCCCeeeEEEccCCCEEEEE
Q 042146           81 TIRLWDVPTATSLKTLIGHTNYVFCINFNPQSNRIVSDTFNETIRIWDIKTGKCLKVLPAHSDPVTAIDFNRDGTMIVTS  160 (262)
Q Consensus        81 ~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~  160 (262)
                      .+++|+..+.++++++...  .+.+..|-|.++++++|...|.+.+||+.+...+.++++|.+.|++++.+||+..+++|
T Consensus       395 SikiWn~~t~kciRTi~~~--y~l~~~Fvpgd~~Iv~G~k~Gel~vfdlaS~~l~Eti~AHdgaIWsi~~~pD~~g~vT~  472 (888)
T KOG0306|consen  395 SIKIWNRDTLKCIRTITCG--YILASKFVPGDRYIVLGTKNGELQVFDLASASLVETIRAHDGAIWSISLSPDNKGFVTG  472 (888)
T ss_pred             cEEEEEccCcceeEEeccc--cEEEEEecCCCceEEEeccCCceEEEEeehhhhhhhhhccccceeeeeecCCCCceEEe
Confidence            5666666666666665432  56666666666666666666667777766666666777899999999999999999999


Q ss_pred             eCCCeEEEEeCCC--------------------------------CCccEEEEEcCCCeEEEEecCCCceeeEEeccCCc
Q 042146          161 SYDGLYRILDAST--------------------------------PNGKFILVGTLDNTLRLWNYSTRKILKTYSGYTNS  208 (262)
Q Consensus       161 ~~dg~i~~~d~~~--------------------------------~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~  208 (262)
                      +.|.+|++||...                                ||+++|+++--|.+++||-+.+.+.--.+-+    
T Consensus       473 saDktVkfWdf~l~~~~~gt~~k~lsl~~~rtLel~ddvL~v~~Spdgk~LaVsLLdnTVkVyflDtlKFflsLYG----  548 (888)
T KOG0306|consen  473 SADKTVKFWDFKLVVSVPGTQKKVLSLKHTRTLELEDDVLCVSVSPDGKLLAVSLLDNTVKVYFLDTLKFFLSLYG----  548 (888)
T ss_pred             cCCcEEEEEeEEEEeccCcccceeeeeccceEEeccccEEEEEEcCCCcEEEEEeccCeEEEEEecceeeeeeecc----
Confidence            9999999999643                                8999999999999999999998877777766    


Q ss_pred             eeEEEEEEecCCCeeEEccccceEEEEEcCCCCeEEEeeecCCCcEEEEeec
Q 042146          209 KYCISSTFSVTNGKYIVSHRDPVISVASHPAKNIIASGALDNDRTMKIWTQE  260 (262)
Q Consensus       209 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~d~d~~i~iw~~~  260 (262)
                                        |.-||.||..+||+++++|||  .|.+|+||-++
T Consensus       549 ------------------HkLPV~smDIS~DSklivTgS--ADKnVKiWGLd  580 (888)
T KOG0306|consen  549 ------------------HKLPVLSMDISPDSKLIVTGS--ADKNVKIWGLD  580 (888)
T ss_pred             ------------------cccceeEEeccCCcCeEEecc--CCCceEEeccc
Confidence                              999999999999999999999  99999999764

>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]

Probab=99.96  E-value=3.7e-28  Score=200.18  Aligned_cols=207  Identities=24%  Similarity=0.396  Sum_probs=164.8

Q ss_pred             cceecccCcCceEEEEEccCCCeEEEecCCCeEEEeecCCCCCCCCCCCCCCccccCCccccccceeEEEEecCCCccce
Q 042146           15 LTQTLNGHLRAVSYVKFSHDGRLLTSSSAEKTLLTYSLSSISNFDSTPPSPLQKFTGHEQGISDLATIRLWDVPTATSLK   94 (262)
Q Consensus        15 ~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~i~v~d~~~~~~~~   94 (262)
                      .+.+...|.+.|+|+.|+|||++||+||.|+.|.||.....         ......+..+.        .-+.+..+...
T Consensus        61 ~l~~m~~h~~sv~CVR~S~dG~~lAsGSDD~~v~iW~~~~~---------~~~~~fgs~g~--------~~~vE~wk~~~  123 (942)
T KOG0973|consen   61 HLCTMDDHDGSVNCVRFSPDGSYLASGSDDRLVMIWERAEI---------GSGTVFGSTGG--------AKNVESWKVVS  123 (942)
T ss_pred             hheeeccccCceeEEEECCCCCeEeeccCcceEEEeeeccc---------CCccccccccc--------ccccceeeEEE
Confidence            44566789999999999999999999999999999976531         00000000000        11446677888


Q ss_pred             ecccCCcceEEEEEeCCCCEEEeecCCCeEEEEECCCCeeeeeeecCCCCeeeEEEccCCCEEEEEeCCCeEEEEeCCC-
Q 042146           95 TLIGHTNYVFCINFNPQSNRIVSDTFNETIRIWDIKTGKCLKVLPAHSDPVTAIDFNRDGTMIVTSSYDGLYRILDAST-  173 (262)
Q Consensus        95 ~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~d~~~-  173 (262)
                      .+.+|...|..++|+|++.++++++.|++|.+|+.++.+.+..+++|.+.|..+.|.|-|++|++-+.|++|++|.+.. 
T Consensus       124 ~l~~H~~DV~Dv~Wsp~~~~lvS~s~DnsViiwn~~tF~~~~vl~~H~s~VKGvs~DP~Gky~ASqsdDrtikvwrt~dw  203 (942)
T KOG0973|consen  124 ILRGHDSDVLDVNWSPDDSLLVSVSLDNSVIIWNAKTFELLKVLRGHQSLVKGVSWDPIGKYFASQSDDRTLKVWRTSDW  203 (942)
T ss_pred             EEecCCCccceeccCCCccEEEEecccceEEEEccccceeeeeeecccccccceEECCccCeeeeecCCceEEEEEcccc
Confidence            8999999999999999999999999999999999999999999999999999999999999999999999999999655 


Q ss_pred             -------------------------CCcc---------------------------------------------------
Q 042146          174 -------------------------PNGK---------------------------------------------------  177 (262)
Q Consensus       174 -------------------------~~~~---------------------------------------------------  177 (262)
                                               |+|+                                                   
T Consensus       204 ~i~k~It~pf~~~~~~T~f~RlSWSPDG~~las~nA~n~~~~~~~IieR~tWk~~~~LvGH~~p~evvrFnP~lfe~~~~  283 (942)
T KOG0973|consen  204 GIEKSITKPFEESPLTTFFLRLSWSPDGHHLASPNAVNGGKSTIAIIERGTWKVDKDLVGHSAPVEVVRFNPKLFERNNK  283 (942)
T ss_pred             eeeEeeccchhhCCCcceeeecccCCCcCeecchhhccCCcceeEEEecCCceeeeeeecCCCceEEEEeChHHhccccc
Confidence                                     3333                                                   


Q ss_pred             ------------EEEEEcCCCeEEEEecCCCceeeEEeccCCceeEEEEEEecCCCeeEEccccceEEEEEcCCCCeEEE
Q 042146          178 ------------FILVGTLDNTLRLWNYSTRKILKTYSGYTNSKYCISSTFSVTNGKYIVSHRDPVISVASHPAKNIIAS  245 (262)
Q Consensus       178 ------------~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~  245 (262)
                                  .+++|+.|++|-||.....+++......                     ....|.+++|+|||..|+.
T Consensus       284 ng~~~~~~~~y~i~AvgSqDrSlSVW~T~~~RPl~vi~~l---------------------f~~SI~DmsWspdG~~Lfa  342 (942)
T KOG0973|consen  284 NGTSTQPNCYYCIAAVGSQDRSLSVWNTALPRPLFVIHNL---------------------FNKSIVDMSWSPDGFSLFA  342 (942)
T ss_pred             cCCccCCCcceEEEEEecCCccEEEEecCCCCchhhhhhh---------------------hcCceeeeeEcCCCCeEEE
Confidence                        4555666666666665444444333210                     4578999999999999999


Q ss_pred             eeecCCCcEEEEeecc
Q 042146          246 GALDNDRTMKIWTQEK  261 (262)
Q Consensus       246 ~~~d~d~~i~iw~~~~  261 (262)
                      +|  .||+|.+..+++
T Consensus       343 cS--~DGtV~~i~Fee  356 (942)
T KOG0973|consen  343 CS--LDGTVALIHFEE  356 (942)
T ss_pred             Ee--cCCeEEEEEcch
Confidence            99  899999998875

>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=99.96  E-value=2.4e-28  Score=185.54  Aligned_cols=190  Identities=25%  Similarity=0.457  Sum_probs=161.7

Q ss_pred             cccccceecccCcCceEEEEEccCCCeEEEecCCCeEEEeecCCCCCCCCCCCCCCccccCCccccccceeEEEEecCCC
Q 042146           11 RPYTLTQTLNGHLRAVSYVKFSHDGRLLTSSSAEKTLLTYSLSSISNFDSTPPSPLQKFTGHEQGISDLATIRLWDVPTA   90 (262)
Q Consensus        11 ~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~i~v~d~~~~   90 (262)
                      ......+++......|.++.|..||++||+|...|.|+++|+                                   .+.
T Consensus        56 ~~~~~~k~~srFk~~v~s~~fR~DG~LlaaGD~sG~V~vfD~-----------------------------------k~r  100 (487)
T KOG0310|consen   56 VTRSVRKTFSRFKDVVYSVDFRSDGRLLAAGDESGHVKVFDM-----------------------------------KSR  100 (487)
T ss_pred             chhhhhhhHHhhccceeEEEeecCCeEEEccCCcCcEEEecc-----------------------------------ccH
Confidence            344566667777889999999999999999999999888853                                   345


Q ss_pred             ccceecccCCcceEEEEEeC-CCCEEEeecCCCeEEEEECCCCeeeeeeecCCCCeeeEEEcc-CCCEEEEEeCCCeEEE
Q 042146           91 TSLKTLIGHTNYVFCINFNP-QSNRIVSDTFNETIRIWDIKTGKCLKVLPAHSDPVTAIDFNR-DGTMIVTSSYDGLYRI  168 (262)
Q Consensus        91 ~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~dg~i~~  168 (262)
                      ..++.+.+|..++..+.|+| ++..+++|+.|+.+++||+.+......+.+|++.|.+.+|+| ++.++++|+.||+|++
T Consensus       101 ~iLR~~~ah~apv~~~~f~~~d~t~l~s~sDd~v~k~~d~s~a~v~~~l~~htDYVR~g~~~~~~~hivvtGsYDg~vrl  180 (487)
T KOG0310|consen  101 VILRQLYAHQAPVHVTKFSPQDNTMLVSGSDDKVVKYWDLSTAYVQAELSGHTDYVRCGDISPANDHIVVTGSYDGKVRL  180 (487)
T ss_pred             HHHHHHhhccCceeEEEecccCCeEEEecCCCceEEEEEcCCcEEEEEecCCcceeEeeccccCCCeEEEecCCCceEEE
Confidence            56778899999999999999 555678899999999999998887668899999999999999 5568999999999999


Q ss_pred             EeCCC--------------------CCccEEEEEcCCCeEEEEecCCCc-eeeEEeccCCceeEEEEEEecCCCeeEEcc
Q 042146          169 LDAST--------------------PNGKFILVGTLDNTLRLWNYSTRK-ILKTYSGYTNSKYCISSTFSVTNGKYIVSH  227 (262)
Q Consensus       169 ~d~~~--------------------~~~~~l~~~~~dg~i~i~d~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  227 (262)
                      ||++.                    |.|..+++++. ..+++||+.+|. .+..+..                      |
T Consensus       181 ~DtR~~~~~v~elnhg~pVe~vl~lpsgs~iasAgG-n~vkVWDl~~G~qll~~~~~----------------------H  237 (487)
T KOG0310|consen  181 WDTRSLTSRVVELNHGCPVESVLALPSGSLIASAGG-NSVKVWDLTTGGQLLTSMFN----------------------H  237 (487)
T ss_pred             EEeccCCceeEEecCCCceeeEEEcCCCCEEEEcCC-CeEEEEEecCCceehhhhhc----------------------c
Confidence            99987                    67788888774 479999999654 4444444                      8


Q ss_pred             ccceEEEEEcCCCCeEEEeeecCCCcEEEEeec
Q 042146          228 RDPVISVASHPAKNIIASGALDNDRTMKIWTQE  260 (262)
Q Consensus       228 ~~~v~~~~~~p~~~~l~~~~~d~d~~i~iw~~~  260 (262)
                      ...|+|+++..++..|+++|  -|+.|++|++.
T Consensus       238 ~KtVTcL~l~s~~~rLlS~s--LD~~VKVfd~t  268 (487)
T KOG0310|consen  238 NKTVTCLRLASDSTRLLSGS--LDRHVKVFDTT  268 (487)
T ss_pred             cceEEEEEeecCCceEeecc--cccceEEEEcc
Confidence            89999999999999999999  78999999964

>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]

Probab=99.96  E-value=2.3e-28  Score=187.05  Aligned_cols=245  Identities=24%  Similarity=0.406  Sum_probs=180.6

Q ss_pred             cccccceecccCcCceEEEEEccCCCeEEEecCCCeEEEeecCCCCC----CCCCCCCC---Cccc--cCCcccc---cc
Q 042146           11 RPYTLTQTLNGHLRAVSYVKFSHDGRLLTSSSAEKTLLTYSLSSISN----FDSTPPSP---LQKF--TGHEQGI---SD   78 (262)
Q Consensus        11 ~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~----~~~~~~~~---~~~~--~~~~~~v---~~   78 (262)
                      -|......+++|+..|.++++.|.|..|++|+.|-+|++||++....    +....+..   +..+  ......+   +.
T Consensus       155 IP~shEi~l~hgtk~Vsal~~Dp~GaR~~sGs~Dy~v~~wDf~gMdas~~~fr~l~P~E~h~i~sl~ys~Tg~~iLvvsg  234 (641)
T KOG0772|consen  155 IPGSHEIQLKHGTKIVSALAVDPSGARFVSGSLDYTVKFWDFQGMDASMRSFRQLQPCETHQINSLQYSVTGDQILVVSG  234 (641)
T ss_pred             CCccceEeccCCceEEEEeeecCCCceeeeccccceEEEEecccccccchhhhccCcccccccceeeecCCCCeEEEEec
Confidence            36666778899999999999999999999999999999999987432    11111111   1111  1111111   12


Q ss_pred             ceeEEEEecCCCcc------------ceecccCCcceEEEEEeC-CCCEEEeecCCCeEEEEECCCCee-eeeee-----
Q 042146           79 LATIRLWDVPTATS------------LKTLIGHTNYVFCINFNP-QSNRIVSDTFNETIRIWDIKTGKC-LKVLP-----  139 (262)
Q Consensus        79 ~~~i~v~d~~~~~~------------~~~~~~~~~~v~~~~~~~-~~~~l~~~~~dg~i~vwd~~~~~~-~~~~~-----  139 (262)
                      -+..+++|-...+.            +...++|...++|.+|+| +...+++++.||++++||+...+. ...++     
T Consensus       235 ~aqakl~DRdG~~~~e~~KGDQYI~Dm~nTKGHia~lt~g~whP~~k~~FlT~s~DgtlRiWdv~~~k~q~qVik~k~~~  314 (641)
T KOG0772|consen  235 SAQAKLLDRDGFEIVEFSKGDQYIRDMYNTKGHIAELTCGCWHPDNKEEFLTCSYDGTLRIWDVNNTKSQLQVIKTKPAG  314 (641)
T ss_pred             CcceeEEccCCceeeeeeccchhhhhhhccCCceeeeeccccccCcccceEEecCCCcEEEEecCCchhheeEEeeccCC
Confidence            22667777543222            123468999999999999 556789999999999999976542 22222     


Q ss_pred             cCCCCeeeEEEccCCCEEEEEeCCCeEEEEeCCC-------------------------CCccEEEEEcCCCeEEEEecC
Q 042146          140 AHSDPVTAIDFNRDGTMIVTSSYDGLYRILDAST-------------------------PNGKFILVGTLDNTLRLWNYS  194 (262)
Q Consensus       140 ~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~d~~~-------------------------~~~~~l~~~~~dg~i~i~d~~  194 (262)
                      +..-+++.++|+|+++.+++|+.||.|.+|+.++                         .+|++|++-+.|+++++||++
T Consensus       315 g~Rv~~tsC~~nrdg~~iAagc~DGSIQ~W~~~~~~v~p~~~vk~AH~~g~~Itsi~FS~dg~~LlSRg~D~tLKvWDLr  394 (641)
T KOG0772|consen  315 GKRVPVTSCAWNRDGKLIAAGCLDGSIQIWDKGSRTVRPVMKVKDAHLPGQDITSISFSYDGNYLLSRGFDDTLKVWDLR  394 (641)
T ss_pred             CcccCceeeecCCCcchhhhcccCCceeeeecCCcccccceEeeeccCCCCceeEEEeccccchhhhccCCCceeeeecc
Confidence            2334789999999999999999999999999765                         789999999999999999999


Q ss_pred             CC-ceeeEEeccCCceeEEEEEEecCCCeeEEc----------------------------cccceEEEEEcCCCCeEEE
Q 042146          195 TR-KILKTYSGYTNSKYCISSTFSVTNGKYIVS----------------------------HRDPVISVASHPAKNIIAS  245 (262)
Q Consensus       195 ~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------------------------~~~~v~~~~~~p~~~~l~~  245 (262)
                      .. +++....+.........++|++.+.-++.+                            ....|..+.|||.-+.|+.
T Consensus       395 q~kkpL~~~tgL~t~~~~tdc~FSPd~kli~TGtS~~~~~~~g~L~f~d~~t~d~v~ki~i~~aSvv~~~WhpkLNQi~~  474 (641)
T KOG0772|consen  395 QFKKPLNVRTGLPTPFPGTDCCFSPDDKLILTGTSAPNGMTAGTLFFFDRMTLDTVYKIDISTASVVRCLWHPKLNQIFA  474 (641)
T ss_pred             ccccchhhhcCCCccCCCCccccCCCceEEEecccccCCCCCceEEEEeccceeeEEEecCCCceEEEEeecchhhheee
Confidence            74 566666665555555566666655555544                            4567889999999888888


Q ss_pred             eeecCCCcEEEE
Q 042146          246 GALDNDRTMKIW  257 (262)
Q Consensus       246 ~~~d~d~~i~iw  257 (262)
                      |+  .||+++++
T Consensus       475 gs--gdG~~~vy  484 (641)
T KOG0772|consen  475 GS--GDGTAHVY  484 (641)
T ss_pred             ec--CCCceEEE
Confidence            88  88999875

>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics]

Probab=99.96  E-value=6.3e-28  Score=181.72  Aligned_cols=229  Identities=19%  Similarity=0.285  Sum_probs=173.6

Q ss_pred             cCcCceEEEEEccCCC-eEEEecCCCeEEEeecCCCCCCCCC--CCCCCccccCCcccccc----------------cee
Q 042146           21 GHLRAVSYVKFSHDGR-LLTSSSAEKTLLTYSLSSISNFDST--PPSPLQKFTGHEQGISD----------------LAT   81 (262)
Q Consensus        21 ~h~~~v~~~~~~~~~~-~l~s~~~d~~i~iw~~~~~~~~~~~--~~~~~~~~~~~~~~v~~----------------~~~   81 (262)
                      .|.+.|+.+.+-|+.. .+|+++..+.+.|||...-......  ...+...+.+|...-..                ...
T Consensus       122 ~h~gEVnRaRymPQnp~iVAt~t~~~dv~Vfd~tk~~s~~~~~~~~~Pdl~L~gH~~eg~glsWn~~~~g~Lls~~~d~~  201 (422)
T KOG0264|consen  122 NHDGEVNRARYMPQNPNIVATKTSSGDVYVFDYTKHPSKPKASGECRPDLRLKGHEKEGYGLSWNRQQEGTLLSGSDDHT  201 (422)
T ss_pred             cCCccchhhhhCCCCCcEEEecCCCCCEEEEEeccCCCcccccccCCCceEEEeecccccccccccccceeEeeccCCCc
Confidence            5999999999999755 6677788999999998775443332  33445566666653222                228


Q ss_pred             EEEEecCCCcc-------ceecccCCcceEEEEEeC-CCCEEEeecCCCeEEEEECC--CCeeeeeeecCCCCeeeEEEc
Q 042146           82 IRLWDVPTATS-------LKTLIGHTNYVFCINFNP-QSNRIVSDTFNETIRIWDIK--TGKCLKVLPAHSDPVTAIDFN  151 (262)
Q Consensus        82 i~v~d~~~~~~-------~~~~~~~~~~v~~~~~~~-~~~~l~~~~~dg~i~vwd~~--~~~~~~~~~~~~~~v~~~~~~  151 (262)
                      |.+||+.....       ...+.+|...|..++|+| +..++++++.|+.+.|||+|  +.++.+...+|.++|.|++|+
T Consensus       202 i~lwdi~~~~~~~~~~~p~~~~~~h~~~VeDV~~h~~h~~lF~sv~dd~~L~iwD~R~~~~~~~~~~~ah~~~vn~~~fn  281 (422)
T KOG0264|consen  202 ICLWDINAESKEDKVVDPKTIFSGHEDVVEDVAWHPLHEDLFGSVGDDGKLMIWDTRSNTSKPSHSVKAHSAEVNCVAFN  281 (422)
T ss_pred             EEEEeccccccCCccccceEEeecCCcceehhhccccchhhheeecCCCeEEEEEcCCCCCCCcccccccCCceeEEEeC
Confidence            99999975433       345678999999999999 67788999999999999999  567777788999999999999


Q ss_pred             c-CCCEEEEEeCCCeEEEEeCCC----------------------CCccEEEEEcCCCeEEEEecCCCceeeEEeccCCc
Q 042146          152 R-DGTMIVTSSYDGLYRILDAST----------------------PNGKFILVGTLDNTLRLWNYSTRKILKTYSGYTNS  208 (262)
Q Consensus       152 ~-~~~~l~~~~~dg~i~~~d~~~----------------------~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~  208 (262)
                      | ++..||+|+.|++|++||+|.                      .....|++++.|+.+.+||+..-...+.-......
T Consensus       282 p~~~~ilAT~S~D~tV~LwDlRnL~~~lh~~e~H~dev~~V~WSPh~etvLASSg~D~rl~vWDls~ig~eq~~eda~dg  361 (422)
T KOG0264|consen  282 PFNEFILATGSADKTVALWDLRNLNKPLHTFEGHEDEVFQVEWSPHNETVLASSGTDRRLNVWDLSRIGEEQSPEDAEDG  361 (422)
T ss_pred             CCCCceEEeccCCCcEEEeechhcccCceeccCCCcceEEEEeCCCCCceeEecccCCcEEEEeccccccccChhhhccC
Confidence            9 667899999999999999998                      45678999999999999999753322221110000


Q ss_pred             eeEEEEEEecCCC-eeEEccccceEEEEEcCCCCeEE-EeeecCCCcEEEEeec
Q 042146          209 KYCISSTFSVTNG-KYIVSHRDPVISVASHPAKNIIA-SGALDNDRTMKIWTQE  260 (262)
Q Consensus       209 ~~~~~~~~~~~~~-~~~~~~~~~v~~~~~~p~~~~l~-~~~~d~d~~i~iw~~~  260 (262)
                               +++- ..-.||...|..+.|+|....++ +.+  +|+.+.||++.
T Consensus       362 ---------ppEllF~HgGH~~kV~DfsWnp~ePW~I~Sva--eDN~LqIW~~s  404 (422)
T KOG0264|consen  362 ---------PPELLFIHGGHTAKVSDFSWNPNEPWTIASVA--EDNILQIWQMA  404 (422)
T ss_pred             ---------CcceeEEecCcccccccccCCCCCCeEEEEec--CCceEEEeecc
Confidence                     0010 11234899999999999988655 555  79999999986

>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.96  E-value=1.9e-27  Score=166.23  Aligned_cols=205  Identities=20%  Similarity=0.266  Sum_probs=162.6

Q ss_pred             CCCCceeeec-----ccccceecccCcCceEEEEEcc--CCCeEEEecCCCeEEEeecCCCCCCCCCCCCCCccccCCcc
Q 042146            2 SSDRSLESFR-----PYTLTQTLNGHLRAVSYVKFSH--DGRLLTSSSAEKTLLTYSLSSISNFDSTPPSPLQKFTGHEQ   74 (262)
Q Consensus         2 s~d~~i~~~~-----~~~~~~~~~~h~~~v~~~~~~~--~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~   74 (262)
                      |+|++|++|.     +.+++.+|.+|.+||..++|-.  .|.+||+++.||.|.||..++.                   
T Consensus        30 sSD~tVkIf~v~~n~~s~ll~~L~Gh~GPVwqv~wahPk~G~iLAScsYDgkVIiWke~~g-------------------   90 (299)
T KOG1332|consen   30 SSDGTVKIFEVRNNGQSKLLAELTGHSGPVWKVAWAHPKFGTILASCSYDGKVIIWKEENG-------------------   90 (299)
T ss_pred             cCCccEEEEEEcCCCCceeeeEecCCCCCeeEEeecccccCcEeeEeecCceEEEEecCCC-------------------
Confidence            6899999996     2367889999999999999954  6999999999999999965431                   


Q ss_pred             ccccceeEEEEecCCCccceecccCCcceEEEEEeC--CCCEEEeecCCCeEEEEECCCC---eeeeeeecCCCCeeeEE
Q 042146           75 GISDLATIRLWDVPTATSLKTLIGHTNYVFCINFNP--QSNRIVSDTFNETIRIWDIKTG---KCLKVLPAHSDPVTAID  149 (262)
Q Consensus        75 ~v~~~~~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~--~~~~l~~~~~dg~i~vwd~~~~---~~~~~~~~~~~~v~~~~  149 (262)
                                    ..........|...|++++|.|  .|-.|++++.||.|.|.+.+..   .......+|.-.|++++
T Consensus        91 --------------~w~k~~e~~~h~~SVNsV~wapheygl~LacasSDG~vsvl~~~~~g~w~t~ki~~aH~~GvnsVs  156 (299)
T KOG1332|consen   91 --------------RWTKAYEHAAHSASVNSVAWAPHEYGLLLACASSDGKVSVLTYDSSGGWTTSKIVFAHEIGVNSVS  156 (299)
T ss_pred             --------------chhhhhhhhhhcccceeecccccccceEEEEeeCCCcEEEEEEcCCCCccchhhhhccccccceee
Confidence                          2334556678999999999999  5678999999999999988754   22344578999999999


Q ss_pred             EccC---C-----------CEEEEEeCCCeEEEEeCCC--------------------------CCccEEEEEcCCCeEE
Q 042146          150 FNRD---G-----------TMIVTSSYDGLYRILDAST--------------------------PNGKFILVGTLDNTLR  189 (262)
Q Consensus       150 ~~~~---~-----------~~l~~~~~dg~i~~~d~~~--------------------------~~~~~l~~~~~dg~i~  189 (262)
                      |.|-   |           +.|++|+.|..|++|+..+                          ....++++++.||.+.
T Consensus       157 wapa~~~g~~~~~~~~~~~krlvSgGcDn~VkiW~~~~~~w~~e~~l~~H~dwVRDVAwaP~~gl~~s~iAS~SqDg~vi  236 (299)
T KOG1332|consen  157 WAPASAPGSLVDQGPAAKVKRLVSGGCDNLVKIWKFDSDSWKLERTLEGHKDWVRDVAWAPSVGLPKSTIASCSQDGTVI  236 (299)
T ss_pred             ecCcCCCccccccCcccccceeeccCCccceeeeecCCcchhhhhhhhhcchhhhhhhhccccCCCceeeEEecCCCcEE
Confidence            9984   4           5699999999999999876                          2346899999999999


Q ss_pred             EEecCCCceeeEEeccCCceeEEEEEEecCCCeeEEccccceEEEEEcCCCCeEEEeeecCCCcEEEEeec
Q 042146          190 LWNYSTRKILKTYSGYTNSKYCISSTFSVTNGKYIVSHRDPVISVASHPAKNIIASGALDNDRTMKIWTQE  260 (262)
Q Consensus       190 i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~d~d~~i~iw~~~  260 (262)
                      ||-.+.-.......-                   +......+..++||+.|++|+.++  .|+.|.+|+-+
T Consensus       237 Iwt~~~e~e~wk~tl-------------------l~~f~~~~w~vSWS~sGn~LaVs~--GdNkvtlwke~  286 (299)
T KOG1332|consen  237 IWTKDEEYEPWKKTL-------------------LEEFPDVVWRVSWSLSGNILAVSG--GDNKVTLWKEN  286 (299)
T ss_pred             EEEecCccCcccccc-------------------cccCCcceEEEEEeccccEEEEec--CCcEEEEEEeC
Confidence            997652111111000                   000446799999999999999999  89999999865

>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]

Probab=99.96  E-value=2.5e-27  Score=170.26  Aligned_cols=204  Identities=18%  Similarity=0.295  Sum_probs=152.0

Q ss_pred             ccCcCceEEEEEcc-CCCeEEEecCCCeEEEeecCCCCCCCCCCCCCCccccCCccccccceeEEEEecCCCcc-ceecc
Q 042146           20 NGHLRAVSYVKFSH-DGRLLTSSSAEKTLLTYSLSSISNFDSTPPSPLQKFTGHEQGISDLATIRLWDVPTATS-LKTLI   97 (262)
Q Consensus        20 ~~h~~~v~~~~~~~-~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~i~v~d~~~~~~-~~~~~   97 (262)
                      ..-...|.+++||| ...+++++|.||+||+|+++..                                  +.. .+...
T Consensus        24 ~pP~DsIS~l~FSP~~~~~~~A~SWD~tVR~wevq~~----------------------------------g~~~~ka~~   69 (347)
T KOG0647|consen   24 NPPEDSISALAFSPQADNLLAAGSWDGTVRIWEVQNS----------------------------------GQLVPKAQQ   69 (347)
T ss_pred             CCcccchheeEeccccCceEEecccCCceEEEEEecC----------------------------------Ccccchhhh
Confidence            34567899999999 4566779999999999987641                                  111 13455


Q ss_pred             cCCcceEEEEEeCCCCEEEeecCCCeEEEEECCCCeeeeeeecCCCCeeeEEEccCCC--EEEEEeCCCeEEEEeCCC--
Q 042146           98 GHTNYVFCINFNPQSNRIVSDTFNETIRIWDIKTGKCLKVLPAHSDPVTAIDFNRDGT--MIVTSSYDGLYRILDAST--  173 (262)
Q Consensus        98 ~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~--~l~~~~~dg~i~~~d~~~--  173 (262)
                      .|.++|.+++|+.+|..+++|+.|+.+++||+.+++. ..+..|.++|..+.|-+...  .|++|+.|++|+.||+|.  
T Consensus        70 ~~~~PvL~v~WsddgskVf~g~~Dk~~k~wDL~S~Q~-~~v~~Hd~pvkt~~wv~~~~~~cl~TGSWDKTlKfWD~R~~~  148 (347)
T KOG0647|consen   70 SHDGPVLDVCWSDDGSKVFSGGCDKQAKLWDLASGQV-SQVAAHDAPVKTCHWVPGMNYQCLVTGSWDKTLKFWDTRSSN  148 (347)
T ss_pred             ccCCCeEEEEEccCCceEEeeccCCceEEEEccCCCe-eeeeecccceeEEEEecCCCcceeEecccccceeecccCCCC
Confidence            6889999999999999999999999999999999964 56678999999999988655  899999999999999998  


Q ss_pred             ---------------CCccEEEEEcCCCeEEEEecCCCcee---------------eEEeccCCc----eeEEEEEEe--
Q 042146          174 ---------------PNGKFILVGTLDNTLRLWNYSTRKIL---------------KTYSGYTNS----KYCISSTFS--  217 (262)
Q Consensus       174 ---------------~~~~~l~~~~~dg~i~i~d~~~~~~~---------------~~~~~~~~~----~~~~~~~~~--  217 (262)
                                     .-..+++++..+..|.+|+++++...               ..++..+..    +........  
T Consensus       149 pv~t~~LPeRvYa~Dv~~pm~vVata~r~i~vynL~n~~te~k~~~SpLk~Q~R~va~f~d~~~~alGsiEGrv~iq~id  228 (347)
T KOG0647|consen  149 PVATLQLPERVYAADVLYPMAVVATAERHIAVYNLENPPTEFKRIESPLKWQTRCVACFQDKDGFALGSIEGRVAIQYID  228 (347)
T ss_pred             eeeeeeccceeeehhccCceeEEEecCCcEEEEEcCCCcchhhhhcCcccceeeEEEEEecCCceEeeeecceEEEEecC
Confidence                           23567889999999999999764322               222211110    000000000  


Q ss_pred             ---cCCCeeEEccc---------cceEEEEEcCCCCeEEEeeecCCCcEEEEeec
Q 042146          218 ---VTNGKYIVSHR---------DPVISVASHPAKNIIASGALDNDRTMKIWTQE  260 (262)
Q Consensus       218 ---~~~~~~~~~~~---------~~v~~~~~~p~~~~l~~~~~d~d~~i~iw~~~  260 (262)
                         +..+..+..|+         -.|++++|+|....|+|+|  .||++.+||-+
T Consensus       229 ~~~~~~nFtFkCHR~~~~~~~~VYaVNsi~FhP~hgtlvTaG--sDGtf~FWDkd  281 (347)
T KOG0647|consen  229 DPNPKDNFTFKCHRSTNSVNDDVYAVNSIAFHPVHGTLVTAG--SDGTFSFWDKD  281 (347)
T ss_pred             CCCccCceeEEEeccCCCCCCceEEecceEeecccceEEEec--CCceEEEecch
Confidence               01122223354         2589999999999999999  89999999964

>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]

Probab=99.96  E-value=1e-28  Score=181.24  Aligned_cols=170  Identities=26%  Similarity=0.491  Sum_probs=156.5

Q ss_pred             ccccCCccccccce---------------eEEEEecCCCccceecccCCcceEEEEEeCCCCEEEeecCCCeEEEEECCC
Q 042146           67 QKFTGHEQGISDLA---------------TIRLWDVPTATSLKTLIGHTNYVFCINFNPQSNRIVSDTFNETIRIWDIKT  131 (262)
Q Consensus        67 ~~~~~~~~~v~~~~---------------~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~  131 (262)
                      ..+.+|.+.|.+++               +++|||+.+++...++.+|...|..+++++...|+++++.|+.|+.||++.
T Consensus       145 rVi~gHlgWVr~vavdP~n~wf~tgs~DrtikIwDlatg~LkltltGhi~~vr~vavS~rHpYlFs~gedk~VKCwDLe~  224 (460)
T KOG0285|consen  145 RVISGHLGWVRSVAVDPGNEWFATGSADRTIKIWDLATGQLKLTLTGHIETVRGVAVSKRHPYLFSAGEDKQVKCWDLEY  224 (460)
T ss_pred             hhhhhccceEEEEeeCCCceeEEecCCCceeEEEEcccCeEEEeecchhheeeeeeecccCceEEEecCCCeeEEEechh
Confidence            34567777776655               999999999999999999999999999999999999999999999999999


Q ss_pred             CeeeeeeecCCCCeeeEEEccCCCEEEEEeCCCeEEEEeCCC--------------------CCccEEEEEcCCCeEEEE
Q 042146          132 GKCLKVLPAHSDPVTAIDFNRDGTMIVTSSYDGLYRILDAST--------------------PNGKFILVGTLDNTLRLW  191 (262)
Q Consensus       132 ~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~d~~~--------------------~~~~~l~~~~~dg~i~i~  191 (262)
                      ++.++.+.+|-+.|.+++.+|.-+.|++|+.|.++++||+|+                    +-...+++|+.|++|++|
T Consensus       225 nkvIR~YhGHlS~V~~L~lhPTldvl~t~grDst~RvWDiRtr~~V~~l~GH~~~V~~V~~~~~dpqvit~S~D~tvrlW  304 (460)
T KOG0285|consen  225 NKVIRHYHGHLSGVYCLDLHPTLDVLVTGGRDSTIRVWDIRTRASVHVLSGHTNPVASVMCQPTDPQVITGSHDSTVRLW  304 (460)
T ss_pred             hhhHHHhccccceeEEEeccccceeEEecCCcceEEEeeecccceEEEecCCCCcceeEEeecCCCceEEecCCceEEEe
Confidence            999999999999999999999999999999999999999998                    557789999999999999


Q ss_pred             ecCCCceeeEEeccCCceeEEEEEEecCCCeeEEccccceEEEEEcCCCCeEEEeeecCCCcEEEEeecc
Q 042146          192 NYSTRKILKTYSGYTNSKYCISSTFSVTNGKYIVSHRDPVISVASHPAKNIIASGALDNDRTMKIWTQEK  261 (262)
Q Consensus       192 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~d~d~~i~iw~~~~  261 (262)
                      |++.|+...++..                      |+..|.+++.+|....+|+++.|   .|+-|++.+
T Consensus       305 Dl~agkt~~tlt~----------------------hkksvral~lhP~e~~fASas~d---nik~w~~p~  349 (460)
T KOG0285|consen  305 DLRAGKTMITLTH----------------------HKKSVRALCLHPKENLFASASPD---NIKQWKLPE  349 (460)
T ss_pred             eeccCceeEeeec----------------------ccceeeEEecCCchhhhhccCCc---cceeccCCc
Confidence            9999999988887                      89999999999999999999833   799998864

>KOG0289 consensus mRNA splicing factor [General function prediction only]

Probab=99.96  E-value=2.5e-27  Score=177.81  Aligned_cols=219  Identities=21%  Similarity=0.341  Sum_probs=177.1

Q ss_pred             eecccccceecccCcCceEEEEEccCCCeEEEecCCCeEEEeecCCCCCCCCCCCCCCccccCCccccccc---------
Q 042146            9 SFRPYTLTQTLNGHLRAVSYVKFSHDGRLLTSSSAEKTLLTYSLSSISNFDSTPPSPLQKFTGHEQGISDL---------   79 (262)
Q Consensus         9 ~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~---------   79 (262)
                      +....+.+.+|+||...|+.+.|+|+...+++++.|..|++|......        .......|...|..+         
T Consensus       247 d~~s~q~l~~~~Gh~kki~~v~~~~~~~~v~~aSad~~i~vws~~~~s--------~~~~~~~h~~~V~~ls~h~tgeYl  318 (506)
T KOG0289|consen  247 DKPSNQILATLKGHTKKITSVKFHKDLDTVITASADEIIRVWSVPLSS--------EPTSSRPHEEPVTGLSLHPTGEYL  318 (506)
T ss_pred             ecchhhhhhhccCcceEEEEEEeccchhheeecCCcceEEeecccccc--------CccccccccccceeeeeccCCcEE
Confidence            335678899999999999999999999999999999999999765432        222222333333222         


Q ss_pred             ------eeEEEEecCCCccceeccc--CCcceEEEEEeCCCCEEEeecCCCeEEEEECCCCeeeeeeecCCCCeeeEEEc
Q 042146           80 ------ATIRLWDVPTATSLKTLIG--HTNYVFCINFNPQSNRIVSDTFNETIRIWDIKTGKCLKVLPAHSDPVTAIDFN  151 (262)
Q Consensus        80 ------~~i~v~d~~~~~~~~~~~~--~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~  151 (262)
                            +...+.|++++..+.....  ..-.+++.+|||||.+|.+|..||.|++||+.++..+..|.+|.++|..++|+
T Consensus       319 lsAs~d~~w~Fsd~~~g~~lt~vs~~~s~v~~ts~~fHpDgLifgtgt~d~~vkiwdlks~~~~a~Fpght~~vk~i~Fs  398 (506)
T KOG0289|consen  319 LSASNDGTWAFSDISSGSQLTVVSDETSDVEYTSAAFHPDGLIFGTGTPDGVVKIWDLKSQTNVAKFPGHTGPVKAISFS  398 (506)
T ss_pred             EEecCCceEEEEEccCCcEEEEEeeccccceeEEeeEcCCceEEeccCCCceEEEEEcCCccccccCCCCCCceeEEEec
Confidence                  2667778888877665543  22458999999999999999999999999999999999999999999999999


Q ss_pred             cCCCEEEEEeCCCeEEEEeCCC---------------------CCccEEEEEcCCCeEEEEecCC--CceeeEEeccCCc
Q 042146          152 RDGTMIVTSSYDGLYRILDAST---------------------PNGKFILVGTLDNTLRLWNYST--RKILKTYSGYTNS  208 (262)
Q Consensus       152 ~~~~~l~~~~~dg~i~~~d~~~---------------------~~~~~l~~~~~dg~i~i~d~~~--~~~~~~~~~~~~~  208 (262)
                      .+|-+|++++.|+.|++||+|.                     ..|.+|+.++.+=.|++++-.+  ..++..+..    
T Consensus       399 ENGY~Lat~add~~V~lwDLRKl~n~kt~~l~~~~~v~s~~fD~SGt~L~~~g~~l~Vy~~~k~~k~W~~~~~~~~----  474 (506)
T KOG0289|consen  399 ENGYWLATAADDGSVKLWDLRKLKNFKTIQLDEKKEVNSLSFDQSGTYLGIAGSDLQVYICKKKTKSWTEIKELAD----  474 (506)
T ss_pred             cCceEEEEEecCCeEEEEEehhhcccceeeccccccceeEEEcCCCCeEEeecceeEEEEEecccccceeeehhhh----
Confidence            9999999999999999999997                     5788999997776666665333  345555544    


Q ss_pred             eeEEEEEEecCCCeeEEccccceEEEEEcCCCCeEEEeeecCCCcEEEEee
Q 042146          209 KYCISSTFSVTNGKYIVSHRDPVISVASHPAKNIIASGALDNDRTMKIWTQ  259 (262)
Q Consensus       209 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~d~d~~i~iw~~  259 (262)
                                        |.+..+++.|....++++++|  -|..++++.+
T Consensus       475 ------------------~sg~st~v~Fg~~aq~l~s~s--md~~l~~~a~  505 (506)
T KOG0289|consen  475 ------------------HSGLSTGVRFGEHAQYLASTS--MDAILRLYAL  505 (506)
T ss_pred             ------------------cccccceeeecccceEEeecc--chhheEEeec
Confidence                              778899999999999999999  7788888865

>KOG0641 consensus WD40 repeat protein [General function prediction only]

Probab=99.96  E-value=4.8e-26  Score=157.96  Aligned_cols=222  Identities=22%  Similarity=0.388  Sum_probs=175.9

Q ss_pred             cceecccCcCceEEEEEccCCCeEEEecCCCeEEEeecCCCCCCCCCCCCCCccccCCccccccce--------------
Q 042146           15 LTQTLNGHLRAVSYVKFSHDGRLLTSSSAEKTLLTYSLSSISNFDSTPPSPLQKFTGHEQGISDLA--------------   80 (262)
Q Consensus        15 ~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~--------------   80 (262)
                      +.+.-+.|.+.|.|.+|+|+|+++++|+.|++|++..+.......   .....++..|...+..++              
T Consensus        81 ~~kr~khhkgsiyc~~ws~~geliatgsndk~ik~l~fn~dt~~~---~g~dle~nmhdgtirdl~fld~~~s~~~il~s  157 (350)
T KOG0641|consen   81 LCKRNKHHKGSIYCTAWSPCGELIATGSNDKTIKVLPFNADTCNA---TGHDLEFNMHDGTIRDLAFLDDPESGGAILAS  157 (350)
T ss_pred             EeeeccccCccEEEEEecCccCeEEecCCCceEEEEecccccccc---cCcceeeeecCCceeeeEEecCCCcCceEEEe
Confidence            445567899999999999999999999999999998775532211   111223333433333322              


Q ss_pred             ------eEEEEecCCCccceecccCCcceEEEEEeCCCCEEEeecCCCeEEEEECCCCeeeeeeec--C-----CCCeee
Q 042146           81 ------TIRLWDVPTATSLKTLIGHTNYVFCINFNPQSNRIVSDTFNETIRIWDIKTGKCLKVLPA--H-----SDPVTA  147 (262)
Q Consensus        81 ------~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~--~-----~~~v~~  147 (262)
                            .|++-|...++..+.+.+|.+-|.++- +-++-.+++|+.|.+|++||++-..++..+..  |     .+.|.+
T Consensus       158 ~gagdc~iy~tdc~~g~~~~a~sghtghilaly-swn~~m~~sgsqdktirfwdlrv~~~v~~l~~~~~~~glessavaa  236 (350)
T KOG0641|consen  158 AGAGDCKIYITDCGRGQGFHALSGHTGHILALY-SWNGAMFASGSQDKTIRFWDLRVNSCVNTLDNDFHDGGLESSAVAA  236 (350)
T ss_pred             cCCCcceEEEeecCCCCcceeecCCcccEEEEE-EecCcEEEccCCCceEEEEeeeccceeeeccCcccCCCcccceeEE
Confidence                  788889999999999999999998773 23588999999999999999998888877632  2     256899


Q ss_pred             EEEccCCCEEEEEeCCCeEEEEeCCC--------------------CCccEEEEEcCCCeEEEEecCCCceeeEEeccCC
Q 042146          148 IDFNRDGTMIVTSSYDGLYRILDAST--------------------PNGKFILVGTLDNTLRLWNYSTRKILKTYSGYTN  207 (262)
Q Consensus       148 ~~~~~~~~~l~~~~~dg~i~~~d~~~--------------------~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~  207 (262)
                      ++..|.|++|++|-.|....+||++.                    |...|+++++.|..|++-|+. |.+...++.   
T Consensus       237 v~vdpsgrll~sg~~dssc~lydirg~r~iq~f~phsadir~vrfsp~a~yllt~syd~~ikltdlq-gdla~el~~---  312 (350)
T KOG0641|consen  237 VAVDPSGRLLASGHADSSCMLYDIRGGRMIQRFHPHSADIRCVRFSPGAHYLLTCSYDMKIKLTDLQ-GDLAHELPI---  312 (350)
T ss_pred             EEECCCcceeeeccCCCceEEEEeeCCceeeeeCCCccceeEEEeCCCceEEEEecccceEEEeecc-cchhhcCce---
Confidence            99999999999999999999999987                    788999999999999999986 444333321   


Q ss_pred             ceeEEEEEEecCCCeeEEccccceEEEEEcCCCCeEEEeeecCCCcEEEEeec
Q 042146          208 SKYCISSTFSVTNGKYIVSHRDPVISVASHPAKNIIASGALDNDRTMKIWTQE  260 (262)
Q Consensus       208 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~d~d~~i~iw~~~  260 (262)
                                    .++..|++.+..+.|+|..--+++.+  .|.++.+|.++
T Consensus       313 --------------~vv~ehkdk~i~~rwh~~d~sfisss--adkt~tlwa~~  349 (350)
T KOG0641|consen  313 --------------MVVAEHKDKAIQCRWHPQDFSFISSS--ADKTATLWALN  349 (350)
T ss_pred             --------------EEEEeccCceEEEEecCccceeeecc--CcceEEEeccC
Confidence                          11223999999999999999999999  89999999875

>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]

Probab=99.96  E-value=5e-27  Score=177.27  Aligned_cols=234  Identities=22%  Similarity=0.335  Sum_probs=189.3

Q ss_pred             ceecccCcCceEEEEEccCCCeEEEecCCCeEEEeecCCCCCCCCCCC---------CCCccc-cCCccccccce-----
Q 042146           16 TQTLNGHLRAVSYVKFSHDGRLLTSSSAEKTLLTYSLSSISNFDSTPP---------SPLQKF-TGHEQGISDLA-----   80 (262)
Q Consensus        16 ~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~---------~~~~~~-~~~~~~v~~~~-----   80 (262)
                      ...+..|.-+|.|++++|++++.++++.+++|.=|++.........-+         .+...- ..|...+..++     
T Consensus       135 ~~~~~~H~~s~~~vals~d~~~~fsask~g~i~kw~v~tgk~~~~i~~~~ev~k~~~~~~k~~r~~h~keil~~avS~Dg  214 (479)
T KOG0299|consen  135 FRVIGKHQLSVTSVALSPDDKRVFSASKDGTILKWDVLTGKKDRYIIERDEVLKSHGNPLKESRKGHVKEILTLAVSSDG  214 (479)
T ss_pred             ceeeccccCcceEEEeeccccceeecCCCcceeeeehhcCcccccccccchhhhhccCCCCcccccccceeEEEEEcCCC
Confidence            466778999999999999999999999999999999877653311111         111111 13433333322     


Q ss_pred             ----------eEEEEecCCCccceecccCCcceEEEEEeCCCCEEEeecCCCeEEEEECCCCeeeeeeecCCCCeeeEEE
Q 042146           81 ----------TIRLWDVPTATSLKTLIGHTNYVFCINFNPQSNRIVSDTFNETIRIWDIKTGKCLKVLPAHSDPVTAIDF  150 (262)
Q Consensus        81 ----------~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~  150 (262)
                                .|.||+.++.+.++.+.+|.+.|.+++|-.....+++++.|..|++|++.....+.++.+|.+.|.++.-
T Consensus       215 kylatgg~d~~v~Iw~~~t~ehv~~~~ghr~~V~~L~fr~gt~~lys~s~Drsvkvw~~~~~s~vetlyGHqd~v~~Ida  294 (479)
T KOG0299|consen  215 KYLATGGRDRHVQIWDCDTLEHVKVFKGHRGAVSSLAFRKGTSELYSASADRSVKVWSIDQLSYVETLYGHQDGVLGIDA  294 (479)
T ss_pred             cEEEecCCCceEEEecCcccchhhcccccccceeeeeeecCccceeeeecCCceEEEehhHhHHHHHHhCCccceeeech
Confidence                      7889999999999999999999999999988889999999999999999998889999999999999998


Q ss_pred             ccCCCEEEEEeCCCeEEEEeCCC------------------CCccEEEEEcCCCeEEEEecCCCceeeEEeccCCceeEE
Q 042146          151 NRDGTMIVTSSYDGLYRILDAST------------------PNGKFILVGTLDNTLRLWNYSTRKILKTYSGYTNSKYCI  212 (262)
Q Consensus       151 ~~~~~~l~~~~~dg~i~~~d~~~------------------~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~  212 (262)
                      ...++.+-+|+.|+++++|++..                  -+...+++|+.+|.|.+|++.+.+++.+.+...+.....
T Consensus       295 L~reR~vtVGgrDrT~rlwKi~eesqlifrg~~~sidcv~~In~~HfvsGSdnG~IaLWs~~KKkplf~~~~AHgv~~~~  374 (479)
T KOG0299|consen  295 LSRERCVTVGGRDRTVRLWKIPEESQLIFRGGEGSIDCVAFINDEHFVSGSDNGSIALWSLLKKKPLFTSRLAHGVIPEL  374 (479)
T ss_pred             hcccceEEeccccceeEEEeccccceeeeeCCCCCeeeEEEecccceeeccCCceEEEeeecccCceeEeeccccccCCc
Confidence            88888888888999999999966                  467889999999999999999999988876432211100


Q ss_pred             EEEEecCCCeeEEccccceEEEEEcCCCCeEEEeeecCCCcEEEEeecc
Q 042146          213 SSTFSVTNGKYIVSHRDPVISVASHPAKNIIASGALDNDRTMKIWTQEK  261 (262)
Q Consensus       213 ~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~d~d~~i~iw~~~~  261 (262)
                                -.+.+...|++++..|...++|+|+  .+|.|++|.++.
T Consensus       375 ----------~~~~~~~Witsla~i~~sdL~asGS--~~G~vrLW~i~~  411 (479)
T KOG0299|consen  375 ----------DPVNGNFWITSLAVIPGSDLLASGS--WSGCVRLWKIED  411 (479)
T ss_pred             ----------cccccccceeeeEecccCceEEecC--CCCceEEEEecC
Confidence                      0011345899999999999999999  789999999875

>PTZ00421 coronin; Provisional

Probab=99.96  E-value=2.6e-26  Score=185.25  Aligned_cols=167  Identities=14%  Similarity=0.289  Sum_probs=139.9

Q ss_pred             CCCCceeeeccc---------ccceecccCcCceEEEEEccCC-CeEEEecCCCeEEEeecCCCCCCCCCCCCCCccccC
Q 042146            2 SSDRSLESFRPY---------TLTQTLNGHLRAVSYVKFSHDG-RLLTSSSAEKTLLTYSLSSISNFDSTPPSPLQKFTG   71 (262)
Q Consensus         2 s~d~~i~~~~~~---------~~~~~~~~h~~~v~~~~~~~~~-~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~   71 (262)
                      +.|++|+.|+-.         .++..+.+|...|.+++|+|++ ++|++|+.|++|+|||+                   
T Consensus        95 S~DgtIkIWdi~~~~~~~~~~~~l~~L~gH~~~V~~l~f~P~~~~iLaSgs~DgtVrIWDl-------------------  155 (493)
T PTZ00421         95 SEDGTIMGWGIPEEGLTQNISDPIVHLQGHTKKVGIVSFHPSAMNVLASAGADMVVNVWDV-------------------  155 (493)
T ss_pred             eCCCEEEEEecCCCccccccCcceEEecCCCCcEEEEEeCcCCCCEEEEEeCCCEEEEEEC-------------------
Confidence            468999988621         3567889999999999999985 69999999999988865                   


Q ss_pred             CccccccceeEEEEecCCCccceecccCCcceEEEEEeCCCCEEEeecCCCeEEEEECCCCeeeeeeecCCCC-eeeEEE
Q 042146           72 HEQGISDLATIRLWDVPTATSLKTLIGHTNYVFCINFNPQSNRIVSDTFNETIRIWDIKTGKCLKVLPAHSDP-VTAIDF  150 (262)
Q Consensus        72 ~~~~v~~~~~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~-v~~~~~  150 (262)
                                      ++++.+..+..|...|.+++|+|++++|++++.|+.|++||+++++.+..+..|.+. +..+.|
T Consensus       156 ----------------~tg~~~~~l~~h~~~V~sla~spdG~lLatgs~Dg~IrIwD~rsg~~v~tl~~H~~~~~~~~~w  219 (493)
T PTZ00421        156 ----------------ERGKAVEVIKCHSDQITSLEWNLDGSLLCTTSKDKKLNIIDPRDGTIVSSVEAHASAKSQRCLW  219 (493)
T ss_pred             ----------------CCCeEEEEEcCCCCceEEEEEECCCCEEEEecCCCEEEEEECCCCcEEEEEecCCCCcceEEEE
Confidence                            345566677789999999999999999999999999999999999999888888764 456788


Q ss_pred             ccCCCEEEEEe----CCCeEEEEeCCC----------------------CCccEEEEEc-CCCeEEEEecCCCceeeEEe
Q 042146          151 NRDGTMIVTSS----YDGLYRILDAST----------------------PNGKFILVGT-LDNTLRLWNYSTRKILKTYS  203 (262)
Q Consensus       151 ~~~~~~l~~~~----~dg~i~~~d~~~----------------------~~~~~l~~~~-~dg~i~i~d~~~~~~~~~~~  203 (262)
                      .+++..+++++    .|+.|++||++.                      +++++|++++ .|+.|++||+.+++++....
T Consensus       220 ~~~~~~ivt~G~s~s~Dr~VklWDlr~~~~p~~~~~~d~~~~~~~~~~d~d~~~L~lggkgDg~Iriwdl~~~~~~~~~~  299 (493)
T PTZ00421        220 AKRKDLIITLGCSKSQQRQIMLWDTRKMASPYSTVDLDQSSALFIPFFDEDTNLLYIGSKGEGNIRCFELMNERLTFCSS  299 (493)
T ss_pred             cCCCCeEEEEecCCCCCCeEEEEeCCCCCCceeEeccCCCCceEEEEEcCCCCEEEEEEeCCCeEEEEEeeCCceEEEee
Confidence            99888777654    479999999875                      5677788777 59999999999988776654

>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=99.96  E-value=2.1e-27  Score=186.34  Aligned_cols=214  Identities=24%  Similarity=0.452  Sum_probs=174.6

Q ss_pred             cCcCceE---EEEEc-cCCCeEEEecCCCeEEEeecCCCCCCCCCCCCCCccccCCccccccce---------------e
Q 042146           21 GHLRAVS---YVKFS-HDGRLLTSSSAEKTLLTYSLSSISNFDSTPPSPLQKFTGHEQGISDLA---------------T   81 (262)
Q Consensus        21 ~h~~~v~---~~~~~-~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~---------------~   81 (262)
                      .|...|.   .+..+ |.++||+|||.||.|++|+.........  ......++.|...+..+.               +
T Consensus        19 qn~~~v~~~~~Lq~da~~~ryLfTgGRDg~i~~W~~~~d~~~~s--~~~~asme~HsDWVNDiiL~~~~~tlIS~SsDtT   96 (735)
T KOG0308|consen   19 QNRNGVNITKALQLDAPNGRYLFTGGRDGIIRLWSVTQDSNEPS--TPYIASMEHHSDWVNDIILCGNGKTLISASSDTT   96 (735)
T ss_pred             hccccccchhhccccCCCCceEEecCCCceEEEeccccccCCcc--cchhhhhhhhHhHHhhHHhhcCCCceEEecCCce
Confidence            3455555   44444 4677899999999999999866433211  113455555555443322               9


Q ss_pred             EEEEecCCC--ccceecccCCcceEEEEE-eCCCCEEEeecCCCeEEEEECCCC--eeee--------eee-cCCCCeee
Q 042146           82 IRLWDVPTA--TSLKTLIGHTNYVFCINF-NPQSNRIVSDTFNETIRIWDIKTG--KCLK--------VLP-AHSDPVTA  147 (262)
Q Consensus        82 i~v~d~~~~--~~~~~~~~~~~~v~~~~~-~~~~~~l~~~~~dg~i~vwd~~~~--~~~~--------~~~-~~~~~v~~  147 (262)
                      |++|+...+  -++.++..|.+.|.|+++ .++..++|+|+-|+.|.+||++++  +.+.        .+. ++..+|.+
T Consensus        97 VK~W~~~~~~~~c~stir~H~DYVkcla~~ak~~~lvaSgGLD~~IflWDin~~~~~l~~s~n~~t~~sl~sG~k~siYS  176 (735)
T KOG0308|consen   97 VKVWNAHKDNTFCMSTIRTHKDYVKCLAYIAKNNELVASGGLDRKIFLWDINTGTATLVASFNNVTVNSLGSGPKDSIYS  176 (735)
T ss_pred             EEEeecccCcchhHhhhhcccchheeeeecccCceeEEecCCCccEEEEEccCcchhhhhhccccccccCCCCCccceee
Confidence            999999887  577788999999999999 778899999999999999999976  2222        222 67889999


Q ss_pred             EEEccCCCEEEEEeCCCeEEEEeCCC--------------------CCccEEEEEcCCCeEEEEecCCCceeeEEeccCC
Q 042146          148 IDFNRDGTMIVTSSYDGLYRILDAST--------------------PNGKFILVGTLDNTLRLWNYSTRKILKTYSGYTN  207 (262)
Q Consensus       148 ~~~~~~~~~l~~~~~dg~i~~~d~~~--------------------~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~  207 (262)
                      ++..+.|..+++|+..+.+++||.++                    .+|..+++++.||+|++||+...+++.++..   
T Consensus       177 LA~N~t~t~ivsGgtek~lr~wDprt~~kimkLrGHTdNVr~ll~~dDGt~~ls~sSDgtIrlWdLgqQrCl~T~~v---  253 (735)
T KOG0308|consen  177 LAMNQTGTIIVSGGTEKDLRLWDPRTCKKIMKLRGHTDNVRVLLVNDDGTRLLSASSDGTIRLWDLGQQRCLATYIV---  253 (735)
T ss_pred             eecCCcceEEEecCcccceEEeccccccceeeeeccccceEEEEEcCCCCeEeecCCCceEEeeeccccceeeeEEe---
Confidence            99999999999999999999999887                    7899999999999999999999999999887   


Q ss_pred             ceeEEEEEEecCCCeeEEccccceEEEEEcCCCCeEEEeeecCCCcEEEEeec
Q 042146          208 SKYCISSTFSVTNGKYIVSHRDPVISVASHPAKNIIASGALDNDRTMKIWTQE  260 (262)
Q Consensus       208 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~d~d~~i~iw~~~  260 (262)
                                         |.+.|.++..+|+-..+++|+  .||.|..=++.
T Consensus       254 -------------------H~e~VWaL~~~~sf~~vYsG~--rd~~i~~Tdl~  285 (735)
T KOG0308|consen  254 -------------------HKEGVWALQSSPSFTHVYSGG--RDGNIYRTDLR  285 (735)
T ss_pred             -------------------ccCceEEEeeCCCcceEEecC--CCCcEEecccC
Confidence                               888899999999999999999  89999876654

>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]

Probab=99.96  E-value=2.6e-28  Score=181.88  Aligned_cols=221  Identities=22%  Similarity=0.382  Sum_probs=181.1

Q ss_pred             ccccceecccCcCceEEEEEccCCCeEEEecCCCeEEEeecCCCCCCCCCCCCCCccccCCccccc--------------
Q 042146           12 PYTLTQTLNGHLRAVSYVKFSHDGRLLTSSSAEKTLLTYSLSSISNFDSTPPSPLQKFTGHEQGIS--------------   77 (262)
Q Consensus        12 ~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~--------------   77 (262)
                      |......+..|.+.|..+.|-++...|++|+.|..|++|+....+      ......+.+..+++.              
T Consensus       164 pS~~~~~ld~h~gev~~v~~l~~sdtlatgg~Dr~Ik~W~v~~~k------~~~~~tLaGs~g~it~~d~d~~~~~~iAa  237 (459)
T KOG0288|consen  164 PSRALFVLDAHEGEVHDVEFLRNSDTLATGGSDRIIKLWNVLGEK------SELISTLAGSLGNITSIDFDSDNKHVIAA  237 (459)
T ss_pred             chhhhhhhhccccccceeEEccCcchhhhcchhhhhhhhhcccch------hhhhhhhhccCCCcceeeecCCCceEEee
Confidence            455667788999999999999998899999999999999876533      112222333322222              


Q ss_pred             -cceeEEEEecCCCccceecccCCcceEEEEEeCCCCEEEeecCCCeEEEEECCCCeeeeeeecCCCCeeeEEEccCCCE
Q 042146           78 -DLATIRLWDVPTATSLKTLIGHTNYVFCINFNPQSNRIVSDTFNETIRIWDIKTGKCLKVLPAHSDPVTAIDFNRDGTM  156 (262)
Q Consensus        78 -~~~~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~  156 (262)
                       ....+++|++...+...++.+|.+.|+++.|......+++|+.|.+|++||+....+..++. ..+.+.+|+.+  ...
T Consensus       238 s~d~~~r~Wnvd~~r~~~TLsGHtdkVt~ak~~~~~~~vVsgs~DRtiK~WDl~k~~C~kt~l-~~S~cnDI~~~--~~~  314 (459)
T KOG0288|consen  238 SNDKNLRLWNVDSLRLRHTLSGHTDKVTAAKFKLSHSRVVSGSADRTIKLWDLQKAYCSKTVL-PGSQCNDIVCS--ISD  314 (459)
T ss_pred             cCCCceeeeeccchhhhhhhcccccceeeehhhccccceeeccccchhhhhhhhhhheecccc-ccccccceEec--cee
Confidence             22279999999999999999999999999998877779999999999999999988887764 35667777776  557


Q ss_pred             EEEEeCCCeEEEEeCCC-------------------CCccEEEEEcCCCeEEEEecCCCceeeEEeccCCceeEEEEEEe
Q 042146          157 IVTSSYDGLYRILDAST-------------------PNGKFILVGTLDNTLRLWNYSTRKILKTYSGYTNSKYCISSTFS  217 (262)
Q Consensus       157 l~~~~~dg~i~~~d~~~-------------------~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~  217 (262)
                      ++++..|++|++||.++                   +++..|++++.|.++.+.|+++.+....+......         
T Consensus       315 ~~SgH~DkkvRfwD~Rs~~~~~sv~~gg~vtSl~ls~~g~~lLsssRDdtl~viDlRt~eI~~~~sA~g~k---------  385 (459)
T KOG0288|consen  315 VISGHFDKKVRFWDIRSADKTRSVPLGGRVTSLDLSMDGLELLSSSRDDTLKVIDLRTKEIRQTFSAEGFK---------  385 (459)
T ss_pred             eeecccccceEEEeccCCceeeEeecCcceeeEeeccCCeEEeeecCCCceeeeecccccEEEEeeccccc---------
Confidence            88999999999999887                   68888999999999999999999888888753321         


Q ss_pred             cCCCeeEEccccceEEEEEcCCCCeEEEeeecCCCcEEEEeecc
Q 042146          218 VTNGKYIVSHRDPVISVASHPAKNIIASGALDNDRTMKIWTQEK  261 (262)
Q Consensus       218 ~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~d~d~~i~iw~~~~  261 (262)
                               .....+.+.|||++.|+++||  .||.|+||++.+
T Consensus       386 ---------~asDwtrvvfSpd~~YvaAGS--~dgsv~iW~v~t  418 (459)
T KOG0288|consen  386 ---------CASDWTRVVFSPDGSYVAAGS--ADGSVYIWSVFT  418 (459)
T ss_pred             ---------cccccceeEECCCCceeeecc--CCCcEEEEEccC
Confidence                     333489999999999999999  899999999864

>KOG0300 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.96  E-value=2.7e-27  Score=171.73  Aligned_cols=234  Identities=22%  Similarity=0.356  Sum_probs=180.5

Q ss_pred             CCCCc--eeeecccccceecccCcCceEEEEEccCCCeEEEecCCCeEEEeecCCCCCCCC----CCCCCCccccCCccc
Q 042146            2 SSDRS--LESFRPYTLTQTLNGHLRAVSYVKFSHDGRLLTSSSAEKTLLTYSLSSISNFDS----TPPSPLQKFTGHEQG   75 (262)
Q Consensus         2 s~d~~--i~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~----~~~~~~~~~~~~~~~   75 (262)
                      |+|.+  ||..+....+.++.||.+.|+++.|++.+.++++++.|++-.||...-.-....    .......+...+...
T Consensus       167 SADhTA~iWs~Esg~CL~~Y~GH~GSVNsikfh~s~~L~lTaSGD~taHIW~~av~~~vP~~~a~~~hSsEeE~e~sDe~  246 (481)
T KOG0300|consen  167 SADHTARIWSLESGACLATYTGHTGSVNSIKFHNSGLLLLTASGDETAHIWKAAVNWEVPSNNAPSDHSSEEEEEHSDEH  246 (481)
T ss_pred             ccccceeEEeeccccceeeecccccceeeEEeccccceEEEccCCcchHHHHHhhcCcCCCCCCCCCCCchhhhhccccc
Confidence            45665  455578899999999999999999999999999999999999997321100000    000000001111000


Q ss_pred             cccce-eEEEEec-CCCccceecccCCcceEEEEEeCCCCEEEeecCCCeEEEEECCCCeeeeeeecCCCCeeeEEEccC
Q 042146           76 ISDLA-TIRLWDV-PTATSLKTLIGHTNYVFCINFNPQSNRIVSDTFNETIRIWDIKTGKCLKVLPAHSDPVTAIDFNRD  153 (262)
Q Consensus        76 v~~~~-~i~v~d~-~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~  153 (262)
                      ..... ..+. |- .-..++..+.+|.+.|.+..|...++++++++.|.+..+||++++.++..+.+|....+.++-+|.
T Consensus       247 ~~d~d~~~~s-D~~tiRvPl~~ltgH~~vV~a~dWL~gg~Q~vTaSWDRTAnlwDVEtge~v~~LtGHd~ELtHcstHpt  325 (481)
T KOG0300|consen  247 NRDTDSSEKS-DGHTIRVPLMRLTGHRAVVSACDWLAGGQQMVTASWDRTANLWDVETGEVVNILTGHDSELTHCSTHPT  325 (481)
T ss_pred             cccccccccc-CCceeeeeeeeeeccccceEehhhhcCcceeeeeeccccceeeeeccCceeccccCcchhccccccCCc
Confidence            00000 0000 00 012356678899999999999999999999999999999999999999999999999999999999


Q ss_pred             CCEEEEEeCCCeEEEEeCCC--------------------CCccEEEEEcCCCeEEEEecCCC-ceeeEEeccCCceeEE
Q 042146          154 GTMIVTSSYDGLYRILDAST--------------------PNGKFILVGTLDNTLRLWNYSTR-KILKTYSGYTNSKYCI  212 (262)
Q Consensus       154 ~~~l~~~~~dg~i~~~d~~~--------------------~~~~~l~~~~~dg~i~i~d~~~~-~~~~~~~~~~~~~~~~  212 (262)
                      .+++++++.|.+.++||++.                    ..+..+++|+.|.+|++||+++. .++.++.         
T Consensus       326 QrLVvTsSrDtTFRLWDFReaI~sV~VFQGHtdtVTS~vF~~dd~vVSgSDDrTvKvWdLrNMRsplATIR---------  396 (481)
T KOG0300|consen  326 QRLVVTSSRDTTFRLWDFREAIQSVAVFQGHTDTVTSVVFNTDDRVVSGSDDRTVKVWDLRNMRSPLATIR---------  396 (481)
T ss_pred             ceEEEEeccCceeEeccchhhcceeeeecccccceeEEEEecCCceeecCCCceEEEeeeccccCcceeee---------
Confidence            99999999999999999987                    45677999999999999999975 4667776         


Q ss_pred             EEEEecCCCeeEEccccceEEEEEcCCCCeEEEeeecCCCcEEEEeecc
Q 042146          213 SSTFSVTNGKYIVSHRDPVISVASHPAKNIIASGALDNDRTMKIWTQEK  261 (262)
Q Consensus       213 ~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~d~d~~i~iw~~~~  261 (262)
                                    -..+++.++.+..+++++.--  ++..|++||++.
T Consensus       397 --------------tdS~~NRvavs~g~~iIAiPh--DNRqvRlfDlnG  429 (481)
T KOG0300|consen  397 --------------TDSPANRVAVSKGHPIIAIPH--DNRQVRLFDLNG  429 (481)
T ss_pred             --------------cCCccceeEeecCCceEEecc--CCceEEEEecCC
Confidence                          667899999998888998887  789999999975

>KOG0646 consensus WD40 repeat protein [General function prediction only]

Probab=99.95  E-value=1.5e-26  Score=174.89  Aligned_cols=199  Identities=17%  Similarity=0.262  Sum_probs=162.0

Q ss_pred             ccCcCceEEEEEccCCCeEEEecCCCeEEEeecCCCCCCCCCCCCCCccccCCccccccceeEEEEecCCCccceecccC
Q 042146           20 NGHLRAVSYVKFSHDGRLLTSSSAEKTLLTYSLSSISNFDSTPPSPLQKFTGHEQGISDLATIRLWDVPTATSLKTLIGH   99 (262)
Q Consensus        20 ~~h~~~v~~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~i~v~d~~~~~~~~~~~~~   99 (262)
                      -.-+++|.|++-+|+|.+|+.|+..|.|++|                                   .+.+|..+..+.+|
T Consensus        78 ~v~Pg~v~al~s~n~G~~l~ag~i~g~lYlW-----------------------------------elssG~LL~v~~aH  122 (476)
T KOG0646|consen   78 IVLPGPVHALASSNLGYFLLAGTISGNLYLW-----------------------------------ELSSGILLNVLSAH  122 (476)
T ss_pred             cccccceeeeecCCCceEEEeecccCcEEEE-----------------------------------EeccccHHHHHHhh
Confidence            3457889999999999999999888887766                                   55688999999999


Q ss_pred             CcceEEEEEeCCCCEEEeecCCCeEEEEECC---------CCeeeeeeecCCCCeeeEEEccCC--CEEEEEeCCCeEEE
Q 042146          100 TNYVFCINFNPQSNRIVSDTFNETIRIWDIK---------TGKCLKVLPAHSDPVTAIDFNRDG--TMIVTSSYDGLYRI  168 (262)
Q Consensus       100 ~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~---------~~~~~~~~~~~~~~v~~~~~~~~~--~~l~~~~~dg~i~~  168 (262)
                      ...|+|+.|+-|+.++++|+.||.|.+|++.         +-++++.+..|.-+|+++...+.|  ..+++++.|.++++
T Consensus       123 YQ~ITcL~fs~dgs~iiTgskDg~V~vW~l~~lv~a~~~~~~~p~~~f~~HtlsITDl~ig~Gg~~~rl~TaS~D~t~k~  202 (476)
T KOG0646|consen  123 YQSITCLKFSDDGSHIITGSKDGAVLVWLLTDLVSADNDHSVKPLHIFSDHTLSITDLQIGSGGTNARLYTASEDRTIKL  202 (476)
T ss_pred             ccceeEEEEeCCCcEEEecCCCccEEEEEEEeecccccCCCccceeeeccCcceeEEEEecCCCccceEEEecCCceEEE
Confidence            9999999999999999999999999999873         346788899999999999998753  58999999999999


Q ss_pred             EeCCC-------------------CCccEEEEEcCCCeEEEEecCCCceeeEEeccCCceeEEEEEEecCCCeeEEcccc
Q 042146          169 LDAST-------------------PNGKFILVGTLDNTLRLWNYSTRKILKTYSGYTNSKYCISSTFSVTNGKYIVSHRD  229 (262)
Q Consensus       169 ~d~~~-------------------~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  229 (262)
                      ||+..                   |.+..+++|+.+|.|.+.++.......      ..+..-...+.......+.+|..
T Consensus       203 wdlS~g~LLlti~fp~si~av~lDpae~~~yiGt~~G~I~~~~~~~~~~~~------~~v~~k~~~~~~t~~~~~~Gh~~  276 (476)
T KOG0646|consen  203 WDLSLGVLLLTITFPSSIKAVALDPAERVVYIGTEEGKIFQNLLFKLSGQS------AGVNQKGRHEENTQINVLVGHEN  276 (476)
T ss_pred             EEeccceeeEEEecCCcceeEEEcccccEEEecCCcceEEeeehhcCCccc------ccccccccccccceeeeeccccC
Confidence            99887                   788999999999999998876432111      00111111111233334556877


Q ss_pred             --ceEEEEEcCCCCeEEEeeecCCCcEEEEeecc
Q 042146          230 --PVISVASHPAKNIIASGALDNDRTMKIWTQEK  261 (262)
Q Consensus       230 --~v~~~~~~p~~~~l~~~~~d~d~~i~iw~~~~  261 (262)
                        +|+|++.+-||.+|++|+  .||.|.|||+.+
T Consensus       277 ~~~ITcLais~DgtlLlSGd--~dg~VcvWdi~S  308 (476)
T KOG0646|consen  277 ESAITCLAISTDGTLLLSGD--EDGKVCVWDIYS  308 (476)
T ss_pred             CcceeEEEEecCccEEEeeC--CCCCEEEEecch
Confidence              999999999999999999  999999999864

>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]

Probab=99.95  E-value=6.5e-26  Score=163.39  Aligned_cols=200  Identities=22%  Similarity=0.342  Sum_probs=153.5

Q ss_pred             CcCceEEEEEccCCCeEEEecCCCeEEEeecCCCCCCCCCCCCCCccccCCccccccceeEEEEecCCCccceecccCCc
Q 042146           22 HLRAVSYVKFSHDGRLLTSSSAEKTLLTYSLSSISNFDSTPPSPLQKFTGHEQGISDLATIRLWDVPTATSLKTLIGHTN  101 (262)
Q Consensus        22 h~~~v~~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~i~v~d~~~~~~~~~~~~~~~  101 (262)
                      -...|.++.|+|.+..|++++.||++++|+...                                   .. +.....|..
T Consensus        12 P~d~IS~v~f~~~~~~LLvssWDgslrlYdv~~-----------------------------------~~-l~~~~~~~~   55 (323)
T KOG1036|consen   12 PEDGISSVKFSPSSSDLLVSSWDGSLRLYDVPA-----------------------------------NS-LKLKFKHGA   55 (323)
T ss_pred             ChhceeeEEEcCcCCcEEEEeccCcEEEEeccc-----------------------------------hh-hhhheecCC
Confidence            357799999999999999999999999997643                                   22 222234889


Q ss_pred             ceEEEEEeCCCCEEEeecCCCeEEEEECCCCeeeeeeecCCCCeeeEEEccCCCEEEEEeCCCeEEEEeCCC--------
Q 042146          102 YVFCINFNPQSNRIVSDTFNETIRIWDIKTGKCLKVLPAHSDPVTAIDFNRDGTMIVTSSYDGLYRILDAST--------  173 (262)
Q Consensus       102 ~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~d~~~--------  173 (262)
                      ++.+++|.+ ...+++|+.||.|+.+|++++... .+..|..+|.++.+++....+++|+.|++|++||.+.        
T Consensus        56 plL~c~F~d-~~~~~~G~~dg~vr~~Dln~~~~~-~igth~~~i~ci~~~~~~~~vIsgsWD~~ik~wD~R~~~~~~~~d  133 (323)
T KOG1036|consen   56 PLLDCAFAD-ESTIVTGGLDGQVRRYDLNTGNED-QIGTHDEGIRCIEYSYEVGCVISGSWDKTIKFWDPRNKVVVGTFD  133 (323)
T ss_pred             ceeeeeccC-CceEEEeccCceEEEEEecCCcce-eeccCCCceEEEEeeccCCeEEEcccCccEEEEeccccccccccc
Confidence            999999986 567899999999999999988654 4557999999999999888999999999999999994        


Q ss_pred             ---------CCccEEEEEcCCCeEEEEecCCCceeeEEeccCCceeEEEEEEecCCCeeEE-------------------
Q 042146          174 ---------PNGKFILVGTLDNTLRLWNYSTRKILKTYSGYTNSKYCISSTFSVTNGKYIV-------------------  225 (262)
Q Consensus       174 ---------~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------------  225 (262)
                               ..++.|++|+.+..+.+||+++.....+.....-......+...+....++.                   
T Consensus       134 ~~kkVy~~~v~g~~LvVg~~~r~v~iyDLRn~~~~~q~reS~lkyqtR~v~~~pn~eGy~~sSieGRVavE~~d~s~~~~  213 (323)
T KOG1036|consen  134 QGKKVYCMDVSGNRLVVGTSDRKVLIYDLRNLDEPFQRRESSLKYQTRCVALVPNGEGYVVSSIEGRVAVEYFDDSEEAQ  213 (323)
T ss_pred             cCceEEEEeccCCEEEEeecCceEEEEEcccccchhhhccccceeEEEEEEEecCCCceEEEeecceEEEEccCCchHHh
Confidence                     5688999999999999999997654332222111111112222221111111                   


Q ss_pred             -------ccc---------cceEEEEEcCCCCeEEEeeecCCCcEEEEeecc
Q 042146          226 -------SHR---------DPVISVASHPAKNIIASGALDNDRTMKIWTQEK  261 (262)
Q Consensus       226 -------~~~---------~~v~~~~~~p~~~~l~~~~~d~d~~i~iw~~~~  261 (262)
                             .|.         -+|++|+|||-...|+||+  .||.|.+||+.+
T Consensus       214 skkyaFkCHr~~~~~~~~~yPVNai~Fhp~~~tfaTgG--sDG~V~~Wd~~~  263 (323)
T KOG1036|consen  214 SKKYAFKCHRLSEKDTEIIYPVNAIAFHPIHGTFATGG--SDGIVNIWDLFN  263 (323)
T ss_pred             hhceeEEeeecccCCceEEEEeceeEeccccceEEecC--CCceEEEccCcc
Confidence                   132         3799999999999999999  999999999864

>KOG0289 consensus mRNA splicing factor [General function prediction only]

Probab=99.95  E-value=1.7e-26  Score=173.39  Aligned_cols=179  Identities=23%  Similarity=0.505  Sum_probs=166.2

Q ss_pred             CceEEEEEccCCCeEEEecCCCeEEEeecCCCCCCCCCCCCCCccccCCccccccceeEEEEecCCCccceecccCCcce
Q 042146           24 RAVSYVKFSHDGRLLTSSSAEKTLLTYSLSSISNFDSTPPSPLQKFTGHEQGISDLATIRLWDVPTATSLKTLIGHTNYV  103 (262)
Q Consensus        24 ~~v~~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~i~v~d~~~~~~~~~~~~~~~~v  103 (262)
                      ..+.++...|..+.+++|+.|..+.++                                   |....+.+..+++|...|
T Consensus       220 pgi~ald~~~s~~~ilTGG~d~~av~~-----------------------------------d~~s~q~l~~~~Gh~kki  264 (506)
T KOG0289|consen  220 PGITALDIIPSSSKILTGGEDKTAVLF-----------------------------------DKPSNQILATLKGHTKKI  264 (506)
T ss_pred             CCeeEEeecCCCCcceecCCCCceEEE-----------------------------------ecchhhhhhhccCcceEE
Confidence            568889888888889999999887777                                   445678889999999999


Q ss_pred             EEEEEeCCCCEEEeecCCCeEEEEECCCCeeeeeeecCCCCeeeEEEccCCCEEEEEeCCCeEEEEeCCC----------
Q 042146          104 FCINFNPQSNRIVSDTFNETIRIWDIKTGKCLKVLPAHSDPVTAIDFNRDGTMIVTSSYDGLYRILDAST----------  173 (262)
Q Consensus       104 ~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~d~~~----------  173 (262)
                      +.+.++|+...+++++.|..|+||.............|..+|+.+..+|.|.||++++.||+..+.|+++          
T Consensus       265 ~~v~~~~~~~~v~~aSad~~i~vws~~~~s~~~~~~~h~~~V~~ls~h~tgeYllsAs~d~~w~Fsd~~~g~~lt~vs~~  344 (506)
T KOG0289|consen  265 TSVKFHKDLDTVITASADEIIRVWSVPLSSEPTSSRPHEEPVTGLSLHPTGEYLLSASNDGTWAFSDISSGSQLTVVSDE  344 (506)
T ss_pred             EEEEeccchhheeecCCcceEEeeccccccCccccccccccceeeeeccCCcEEEEecCCceEEEEEccCCcEEEEEeec
Confidence            9999999999999999999999999988777788889999999999999999999999999999999887          


Q ss_pred             ------------CCccEEEEEcCCCeEEEEecCCCceeeEEeccCCceeEEEEEEecCCCeeEEccccceEEEEEcCCCC
Q 042146          174 ------------PNGKFILVGTLDNTLRLWNYSTRKILKTYSGYTNSKYCISSTFSVTNGKYIVSHRDPVISVASHPAKN  241 (262)
Q Consensus       174 ------------~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~  241 (262)
                                  |||..|.+|+.||.|+|||+..+..+..|++                      |.++|..++|+.+|-
T Consensus       345 ~s~v~~ts~~fHpDgLifgtgt~d~~vkiwdlks~~~~a~Fpg----------------------ht~~vk~i~FsENGY  402 (506)
T KOG0289|consen  345 TSDVEYTSAAFHPDGLIFGTGTPDGVVKIWDLKSQTNVAKFPG----------------------HTGPVKAISFSENGY  402 (506)
T ss_pred             cccceeEEeeEcCCceEEeccCCCceEEEEEcCCccccccCCC----------------------CCCceeEEEeccCce
Confidence                        8999999999999999999999999999988                      999999999999999


Q ss_pred             eEEEeeecCCCcEEEEeecc
Q 042146          242 IIASGALDNDRTMKIWTQEK  261 (262)
Q Consensus       242 ~l~~~~~d~d~~i~iw~~~~  261 (262)
                      +|++++  +|+.|++||+++
T Consensus       403 ~Lat~a--dd~~V~lwDLRK  420 (506)
T KOG0289|consen  403 WLATAA--DDGSVKLWDLRK  420 (506)
T ss_pred             EEEEEe--cCCeEEEEEehh
Confidence            999999  899999999975

>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]

Probab=99.95  E-value=3.2e-26  Score=180.82  Aligned_cols=242  Identities=22%  Similarity=0.361  Sum_probs=177.3

Q ss_pred             cccccceecccCcCceEEEEEccCCCeEEEecCCCeEEEeecCCCCCCCC---CCCCCC----ccccCCccc----cccc
Q 042146           11 RPYTLTQTLNGHLRAVSYVKFSHDGRLLTSSSAEKTLLTYSLSSISNFDS---TPPSPL----QKFTGHEQG----ISDL   79 (262)
Q Consensus        11 ~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~---~~~~~~----~~~~~~~~~----v~~~   79 (262)
                      ..+++.+.+.+|...|..+++.+.. .++++|.||++++|+-........   ..+...    ..+......    -...
T Consensus         2 ~~Y~ls~~l~gH~~DVr~v~~~~~~-~i~s~sRd~t~~vw~~~~~~~l~~~~~~~~~g~i~~~i~y~e~~~~~l~~g~~D   80 (745)
T KOG0301|consen    2 PQYKLSHELEGHKSDVRAVAVTDGV-CIISGSRDGTVKVWAKKGKQYLETHAFEGPKGFIANSICYAESDKGRLVVGGMD   80 (745)
T ss_pred             CcceeEEEeccCccchheeEecCCe-EEeecCCCCceeeeeccCcccccceecccCcceeeccceeccccCcceEeeccc
Confidence            4578889999999999999986654 799999999999998643221110   000000    111111111    1223


Q ss_pred             eeEEEEecCCCccceecccCCcceEEEEEeCCCCEEEeecCCCeEEEEECCCCeeeeeeecCCCCeeeEEEccCCCEEEE
Q 042146           80 ATIRLWDVPTATSLKTLIGHTNYVFCINFNPQSNRIVSDTFNETIRIWDIKTGKCLKVLPAHSDPVTAIDFNRDGTMIVT  159 (262)
Q Consensus        80 ~~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~  159 (262)
                      ..+.+|...+..++..+++|+..|.|+....++. +++||.|.++++|-  .+++...+.+|...|++++.-|++ .+++
T Consensus        81 ~~i~v~~~~~~~P~~~LkgH~snVC~ls~~~~~~-~iSgSWD~TakvW~--~~~l~~~l~gH~asVWAv~~l~e~-~~vT  156 (745)
T KOG0301|consen   81 TTIIVFKLSQAEPLYTLKGHKSNVCSLSIGEDGT-LISGSWDSTAKVWR--IGELVYSLQGHTASVWAVASLPEN-TYVT  156 (745)
T ss_pred             ceEEEEecCCCCchhhhhccccceeeeecCCcCc-eEecccccceEEec--chhhhcccCCcchheeeeeecCCC-cEEe
Confidence            3788999999999999999999999999887777 99999999999995  466777799999999999999987 8999


Q ss_pred             EeCCCeEEEEeCCC-----------------CCccEEEEEcCCCeEEEEecCCCceeeEEeccCCceeEEEEEEec----
Q 042146          160 SSYDGLYRILDAST-----------------PNGKFILVGTLDNTLRLWNYSTRKILKTYSGYTNSKYCISSTFSV----  218 (262)
Q Consensus       160 ~~~dg~i~~~d~~~-----------------~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~----  218 (262)
                      |+.|++|++|.-..                 -++..+++++.||.|++|++ +|+++.++.+|.+.+++++...+.    
T Consensus       157 gsaDKtIklWk~~~~l~tf~gHtD~VRgL~vl~~~~flScsNDg~Ir~w~~-~ge~l~~~~ghtn~vYsis~~~~~~~Iv  235 (745)
T KOG0301|consen  157 GSADKTIKLWKGGTLLKTFSGHTDCVRGLAVLDDSHFLSCSNDGSIRLWDL-DGEVLLEMHGHTNFVYSISMALSDGLIV  235 (745)
T ss_pred             ccCcceeeeccCCchhhhhccchhheeeeEEecCCCeEeecCCceEEEEec-cCceeeeeeccceEEEEEEecCCCCeEE
Confidence            99999999998654                 45667889999999999999 799999999988877777622110    


Q ss_pred             -------------CCCeeEEccc-cceEEEEEcCCCCeEEEeeecCCCcEEEEeecc
Q 042146          219 -------------TNGKYIVSHR-DPVISVASHPAKNIIASGALDNDRTMKIWTQEK  261 (262)
Q Consensus       219 -------------~~~~~~~~~~-~~v~~~~~~p~~~~l~~~~~d~d~~i~iw~~~~  261 (262)
                                   ........|. ..|.++.+-++|.++ +|+  .||.||||...+
T Consensus       236 s~gEDrtlriW~~~e~~q~I~lPttsiWsa~~L~NgDIv-vg~--SDG~VrVfT~~k  289 (745)
T KOG0301|consen  236 STGEDRTLRIWKKDECVQVITLPTTSIWSAKVLLNGDIV-VGG--SDGRVRVFTVDK  289 (745)
T ss_pred             EecCCceEEEeecCceEEEEecCccceEEEEEeeCCCEE-Eec--cCceEEEEEecc
Confidence                         0000011133 366777777777644 444  578888877654

>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]

Probab=99.95  E-value=3.7e-26  Score=188.54  Aligned_cols=215  Identities=22%  Similarity=0.394  Sum_probs=168.6

Q ss_pred             cCcCceEEEEEccCCCeEEEec--CCCeEEEeecCCCCCCCCCCCCCCccccCCccccccceeEEEEecCCCccceeccc
Q 042146           21 GHLRAVSYVKFSHDGRLLTSSS--AEKTLLTYSLSSISNFDSTPPSPLQKFTGHEQGISDLATIRLWDVPTATSLKTLIG   98 (262)
Q Consensus        21 ~h~~~v~~~~~~~~~~~l~s~~--~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~i~v~d~~~~~~~~~~~~   98 (262)
                      .++..|.+++.+|++..+|||+  .|+.++||+.+.....                       ...++..-.+.+.++..
T Consensus        11 H~~~~IfSIdv~pdg~~~aTgGq~~d~~~~iW~~~~vl~~-----------------------~~~~~~~l~k~l~~m~~   67 (942)
T KOG0973|consen   11 HNEKSIFSIDVHPDGVKFATGGQVLDGGIVIWSQDPVLDE-----------------------KEEKNENLPKHLCTMDD   67 (942)
T ss_pred             cCCeeEEEEEecCCceeEecCCccccccceeeccccccch-----------------------hhhhhcccchhheeecc
Confidence            3456799999999999999999  9999999987653210                       11122223456677888


Q ss_pred             CCcceEEEEEeCCCCEEEeecCCCeEEEEECCC------------------CeeeeeeecCCCCeeeEEEccCCCEEEEE
Q 042146           99 HTNYVFCINFNPQSNRIVSDTFNETIRIWDIKT------------------GKCLKVLPAHSDPVTAIDFNRDGTMIVTS  160 (262)
Q Consensus        99 ~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~------------------~~~~~~~~~~~~~v~~~~~~~~~~~l~~~  160 (262)
                      |.+.|+|+.|+|||++||+|++|+.|.||+...                  -+.+..+.+|.+.|..++|+|++.+|+++
T Consensus        68 h~~sv~CVR~S~dG~~lAsGSDD~~v~iW~~~~~~~~~~fgs~g~~~~vE~wk~~~~l~~H~~DV~Dv~Wsp~~~~lvS~  147 (942)
T KOG0973|consen   68 HDGSVNCVRFSPDGSYLASGSDDRLVMIWERAEIGSGTVFGSTGGAKNVESWKVVSILRGHDSDVLDVNWSPDDSLLVSV  147 (942)
T ss_pred             ccCceeEEEECCCCCeEeeccCcceEEEeeecccCCcccccccccccccceeeEEEEEecCCCccceeccCCCccEEEEe
Confidence            999999999999999999999999999998762                  13567788999999999999999999999


Q ss_pred             eCCCeEEEEeCCC--------------------CCccEEEEEcCCCeEEEEecCCCceeeEEeccCC----ceeEEEEEE
Q 042146          161 SYDGLYRILDAST--------------------PNGKFILVGTLDNTLRLWNYSTRKILKTYSGYTN----SKYCISSTF  216 (262)
Q Consensus       161 ~~dg~i~~~d~~~--------------------~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~----~~~~~~~~~  216 (262)
                      +.|++|.+|+.++                    |-|+||++-+.|++|+||+..+....+.+..+..    ...-.+..|
T Consensus       148 s~DnsViiwn~~tF~~~~vl~~H~s~VKGvs~DP~Gky~ASqsdDrtikvwrt~dw~i~k~It~pf~~~~~~T~f~RlSW  227 (942)
T KOG0973|consen  148 SLDNSVIIWNAKTFELLKVLRGHQSLVKGVSWDPIGKYFASQSDDRTLKVWRTSDWGIEKSITKPFEESPLTTFFLRLSW  227 (942)
T ss_pred             cccceEEEEccccceeeeeeecccccccceEECCccCeeeeecCCceEEEEEcccceeeEeeccchhhCCCcceeeeccc
Confidence            9999999999887                    8899999999999999999777666665554322    222233334


Q ss_pred             ecCCCe--------------------------eEEccccceEEEEEcCC-----CC------------eEEEeeecCCCc
Q 042146          217 SVTNGK--------------------------YIVSHRDPVISVASHPA-----KN------------IIASGALDNDRT  253 (262)
Q Consensus       217 ~~~~~~--------------------------~~~~~~~~v~~~~~~p~-----~~------------~l~~~~~d~d~~  253 (262)
                      ++++.+                          -++||.+++.+++|+|.     .+            .+|+||  .|++
T Consensus       228 SPDG~~las~nA~n~~~~~~~IieR~tWk~~~~LvGH~~p~evvrFnP~lfe~~~~ng~~~~~~~~y~i~AvgS--qDrS  305 (942)
T KOG0973|consen  228 SPDGHHLASPNAVNGGKSTIAIIERGTWKVDKDLVGHSAPVEVVRFNPKLFERNNKNGTSTQPNCYYCIAAVGS--QDRS  305 (942)
T ss_pred             CCCcCeecchhhccCCcceeEEEecCCceeeeeeecCCCceEEEEeChHHhccccccCCccCCCcceEEEEEec--CCcc
Confidence            433322                          34459999999999982     11            678888  8999


Q ss_pred             EEEEeec
Q 042146          254 MKIWTQE  260 (262)
Q Consensus       254 i~iw~~~  260 (262)
                      |.||...
T Consensus       306 lSVW~T~  312 (942)
T KOG0973|consen  306 LSVWNTA  312 (942)
T ss_pred             EEEEecC
Confidence            9999863

>KOG0282 consensus mRNA splicing factor [Function unknown]

Probab=99.95  E-value=9.3e-27  Score=176.80  Aligned_cols=195  Identities=23%  Similarity=0.444  Sum_probs=152.9

Q ss_pred             CCCccccCCccccccce----------------eEEEEecCC-CccceecccCCcceEEEEEeCCCCEEEeecCCCeEEE
Q 042146           64 SPLQKFTGHEQGISDLA----------------TIRLWDVPT-ATSLKTLIGHTNYVFCINFNPQSNRIVSDTFNETIRI  126 (262)
Q Consensus        64 ~~~~~~~~~~~~v~~~~----------------~i~v~d~~~-~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~v  126 (262)
                      ..+..+.+|..+++++.                .|+||++.. +++++++.+|..+|..++|+++|..+++++.|+.|++
T Consensus       205 k~~~~~~gH~kgvsai~~fp~~~hLlLS~gmD~~vklW~vy~~~~~lrtf~gH~k~Vrd~~~s~~g~~fLS~sfD~~lKl  284 (503)
T KOG0282|consen  205 KLSHNLSGHTKGVSAIQWFPKKGHLLLSGGMDGLVKLWNVYDDRRCLRTFKGHRKPVRDASFNNCGTSFLSASFDRFLKL  284 (503)
T ss_pred             hheeeccCCccccchhhhccceeeEEEecCCCceEEEEEEecCcceehhhhcchhhhhhhhccccCCeeeeeecceeeee
Confidence            34455677877776655                899999987 8899999999999999999999999999999999999


Q ss_pred             EECCCCeeeeeeecCCCCeeeEEEccCC-CEEEEEeCCCeEEEEeCCC--------------------CCccEEEEEcCC
Q 042146          127 WDIKTGKCLKVLPAHSDPVTAIDFNRDG-TMIVTSSYDGLYRILDAST--------------------PNGKFILVGTLD  185 (262)
Q Consensus       127 wd~~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~dg~i~~~d~~~--------------------~~~~~l~~~~~d  185 (262)
                      ||+++|+++..+. ....++|+.|+|++ +.|++|+.|+.|+.||+|+                    +++..+++.++|
T Consensus       285 wDtETG~~~~~f~-~~~~~~cvkf~pd~~n~fl~G~sd~ki~~wDiRs~kvvqeYd~hLg~i~~i~F~~~g~rFissSDd  363 (503)
T KOG0282|consen  285 WDTETGQVLSRFH-LDKVPTCVKFHPDNQNIFLVGGSDKKIRQWDIRSGKVVQEYDRHLGAILDITFVDEGRRFISSSDD  363 (503)
T ss_pred             eccccceEEEEEe-cCCCceeeecCCCCCcEEEEecCCCcEEEEeccchHHHHHHHhhhhheeeeEEccCCceEeeeccC
Confidence            9999999999886 35678999999988 7899999999999999998                    789999999999


Q ss_pred             CeEEEEecCCCceeeEEec-----------cCCceeEEE-------EEEe------cCCCeeEEcc--ccceEEEEEcCC
Q 042146          186 NTLRLWNYSTRKILKTYSG-----------YTNSKYCIS-------STFS------VTNGKYIVSH--RDPVISVASHPA  239 (262)
Q Consensus       186 g~i~i~d~~~~~~~~~~~~-----------~~~~~~~~~-------~~~~------~~~~~~~~~~--~~~v~~~~~~p~  239 (262)
                      +.++||+.+..-+++....           |.+..+..+       ..|+      ....+.+.+|  .+.-..+.||||
T Consensus       364 ks~riWe~~~~v~ik~i~~~~~hsmP~~~~~P~~~~~~aQs~dN~i~ifs~~~~~r~nkkK~feGh~vaGys~~v~fSpD  443 (503)
T KOG0282|consen  364 KSVRIWENRIPVPIKNIADPEMHTMPCLTLHPNGKWFAAQSMDNYIAIFSTVPPFRLNKKKRFEGHSVAGYSCQVDFSPD  443 (503)
T ss_pred             ccEEEEEcCCCccchhhcchhhccCcceecCCCCCeehhhccCceEEEEecccccccCHhhhhcceeccCceeeEEEcCC
Confidence            9999999886644433221           111100000       0011      1111122223  355678999999


Q ss_pred             CCeEEEeeecCCCcEEEEeecc
Q 042146          240 KNIIASGALDNDRTMKIWTQEK  261 (262)
Q Consensus       240 ~~~l~~~~~d~d~~i~iw~~~~  261 (262)
                      |.+|++|.  .||.+.+||.+.
T Consensus       444 G~~l~SGd--sdG~v~~wdwkt  463 (503)
T KOG0282|consen  444 GRTLCSGD--SDGKVNFWDWKT  463 (503)
T ss_pred             CCeEEeec--CCccEEEeechh
Confidence            99999999  899999999763

>KOG1274 consensus WD40 repeat protein [General function prediction only]

Probab=99.95  E-value=3.3e-25  Score=180.09  Aligned_cols=211  Identities=17%  Similarity=0.317  Sum_probs=179.0

Q ss_pred             cCcCceEEEEEccCCCeEEEecCCCeEEEeecCCCCCCCCCCCCCCccccCCcccc-------------ccceeEEEEec
Q 042146           21 GHLRAVSYVKFSHDGRLLTSSSAEKTLLTYSLSSISNFDSTPPSPLQKFTGHEQGI-------------SDLATIRLWDV   87 (262)
Q Consensus        21 ~h~~~v~~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v-------------~~~~~i~v~d~   87 (262)
                      +|+..-+.++|.|+|++|.+++.||.|++|+.....    ..+..+..   +...+             ...++|.+|.+
T Consensus        11 aht~G~t~i~~d~~gefi~tcgsdg~ir~~~~~sd~----e~P~ti~~---~g~~v~~ia~~s~~f~~~s~~~tv~~y~f   83 (933)
T KOG1274|consen   11 AHTGGLTLICYDPDGEFICTCGSDGDIRKWKTNSDE----EEPETIDI---SGELVSSIACYSNHFLTGSEQNTVLRYKF   83 (933)
T ss_pred             hccCceEEEEEcCCCCEEEEecCCCceEEeecCCcc----cCCchhhc---cCceeEEEeecccceEEeeccceEEEeeC
Confidence            689999999999999999999999999999865431    11111111   11112             12228889998


Q ss_pred             CCCccceecccCCcceEEEEEeCCCCEEEeecCCCeEEEEECCCCeeeeeeecCCCCeeeEEEccCCCEEEEEeCCCeEE
Q 042146           88 PTATSLKTLIGHTNYVFCINFNPQSNRIVSDTFNETIRIWDIKTGKCLKVLPAHSDPVTAIDFNRDGTMIVTSSYDGLYR  167 (262)
Q Consensus        88 ~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~  167 (262)
                      ..++.-..+....-++.+++++.+|++++.|+.|-.|++-++.+......+++|.++|.++.|+|.+.+|++.+.||.|+
T Consensus        84 ps~~~~~iL~Rftlp~r~~~v~g~g~~iaagsdD~~vK~~~~~D~s~~~~lrgh~apVl~l~~~p~~~fLAvss~dG~v~  163 (933)
T KOG1274|consen   84 PSGEEDTILARFTLPIRDLAVSGSGKMIAAGSDDTAVKLLNLDDSSQEKVLRGHDAPVLQLSYDPKGNFLAVSSCDGKVQ  163 (933)
T ss_pred             CCCCccceeeeeeccceEEEEecCCcEEEeecCceeEEEEeccccchheeecccCCceeeeeEcCCCCEEEEEecCceEE
Confidence            88877766777788999999999999999999999999999999888899999999999999999999999999999999


Q ss_pred             EEeCCC----------------------------CCccEEEEEcCCCeEEEEecCCCceeeEEeccCCceeEEEEEEecC
Q 042146          168 ILDAST----------------------------PNGKFILVGTLDNTLRLWNYSTRKILKTYSGYTNSKYCISSTFSVT  219 (262)
Q Consensus       168 ~~d~~~----------------------------~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~  219 (262)
                      +||+..                            |++..+++.+.|+.|.+|+....+....+....             
T Consensus       164 iw~~~~~~~~~tl~~v~k~n~~~~s~i~~~~aW~Pk~g~la~~~~d~~Vkvy~r~~we~~f~Lr~~~-------------  230 (933)
T KOG1274|consen  164 IWDLQDGILSKTLTGVDKDNEFILSRICTRLAWHPKGGTLAVPPVDNTVKVYSRKGWELQFKLRDKL-------------  230 (933)
T ss_pred             EEEcccchhhhhcccCCccccccccceeeeeeecCCCCeEEeeccCCeEEEEccCCceeheeecccc-------------
Confidence            999876                            788888888889999999999999888887533             


Q ss_pred             CCeeEEccccceEEEEEcCCCCeEEEeeecCCCcEEEEeec
Q 042146          220 NGKYIVSHRDPVISVASHPAKNIIASGALDNDRTMKIWTQE  260 (262)
Q Consensus       220 ~~~~~~~~~~~v~~~~~~p~~~~l~~~~~d~d~~i~iw~~~  260 (262)
                             +...+.++.|+|.|++||+++  -||.|.|||.+
T Consensus       231 -------~ss~~~~~~wsPnG~YiAAs~--~~g~I~vWnv~  262 (933)
T KOG1274|consen  231 -------SSSKFSDLQWSPNGKYIAAST--LDGQILVWNVD  262 (933)
T ss_pred             -------cccceEEEEEcCCCcEEeeec--cCCcEEEEecc
Confidence                   445599999999999999999  88999999987

>PTZ00420 coronin; Provisional

Probab=99.95  E-value=5.5e-25  Score=178.70  Aligned_cols=185  Identities=20%  Similarity=0.303  Sum_probs=144.6

Q ss_pred             eEEEecCCCeEEEeecCCCCCCCCCCCCCCccccCCccccccceeEEEEecCCCccceecccCCcceEEEEEeCC-CCEE
Q 042146           37 LLTSSSAEKTLLTYSLSSISNFDSTPPSPLQKFTGHEQGISDLATIRLWDVPTATSLKTLIGHTNYVFCINFNPQ-SNRI  115 (262)
Q Consensus        37 ~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~-~~~l  115 (262)
                      ..++++.+-...+|+...+                     ...+.+++|+......+..+.+|...|.+++|+|+ +++|
T Consensus        32 ~~ia~n~~~~A~~w~~~gG---------------------G~~gvI~L~~~~r~~~v~~L~gH~~~V~~lafsP~~~~lL   90 (568)
T PTZ00420         32 CGIACSSGFVAVPWEVEGG---------------------GLIGAIRLENQMRKPPVIKLKGHTSSILDLQFNPCFSEIL   90 (568)
T ss_pred             eeEeeCCCeEEEEEEcCCC---------------------CceeEEEeeecCCCceEEEEcCCCCCEEEEEEcCCCCCEE
Confidence            3455566666777765431                     11235788887777778889999999999999996 7899


Q ss_pred             EeecCCCeEEEEECCCCe--------eeeeeecCCCCeeeEEEccCCCE-EEEEeCCCeEEEEeCCC-------------
Q 042146          116 VSDTFNETIRIWDIKTGK--------CLKVLPAHSDPVTAIDFNRDGTM-IVTSSYDGLYRILDAST-------------  173 (262)
Q Consensus       116 ~~~~~dg~i~vwd~~~~~--------~~~~~~~~~~~v~~~~~~~~~~~-l~~~~~dg~i~~~d~~~-------------  173 (262)
                      ++|+.||+|++||+.++.        ++..+.+|...|.+++|+|++.. |++++.|++|++||++.             
T Consensus        91 ASgS~DgtIrIWDi~t~~~~~~~i~~p~~~L~gH~~~V~sVaf~P~g~~iLaSgS~DgtIrIWDl~tg~~~~~i~~~~~V  170 (568)
T PTZ00420         91 ASGSEDLTIRVWEIPHNDESVKEIKDPQCILKGHKKKISIIDWNPMNYYIMCSSGFDSFVNIWDIENEKRAFQINMPKKL  170 (568)
T ss_pred             EEEeCCCeEEEEECCCCCccccccccceEEeecCCCcEEEEEECCCCCeEEEEEeCCCeEEEEECCCCcEEEEEecCCcE
Confidence            999999999999997542        34467789999999999998875 57899999999999875             


Q ss_pred             ------CCccEEEEEcCCCeEEEEecCCCceeeEEeccCCceeEEEEEEecCCCeeEEccccceEEEEEcCCCCeEEEee
Q 042146          174 ------PNGKFILVGTLDNTLRLWNYSTRKILKTYSGYTNSKYCISSTFSVTNGKYIVSHRDPVISVASHPAKNIIASGA  247 (262)
Q Consensus       174 ------~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~  247 (262)
                            +++.+|++++.|+.|+|||+++++.+..+.+|...+..                 ..+....|++++.+|+++|
T Consensus       171 ~SlswspdG~lLat~s~D~~IrIwD~Rsg~~i~tl~gH~g~~~s-----------------~~v~~~~fs~d~~~IlTtG  233 (568)
T PTZ00420        171 SSLKWNIKGNLLSGTCVGKHMHIIDPRKQEIASSFHIHDGGKNT-----------------KNIWIDGLGGDDNYILSTG  233 (568)
T ss_pred             EEEEECCCCCEEEEEecCCEEEEEECCCCcEEEEEecccCCcee-----------------EEEEeeeEcCCCCEEEEEE
Confidence                  78999999999999999999999999888874332111                 1123345678999999988


Q ss_pred             ecCC----CcEEEEeecc
Q 042146          248 LDND----RTMKIWTQEK  261 (262)
Q Consensus       248 ~d~d----~~i~iw~~~~  261 (262)
                        .|    +.|+|||+.+
T Consensus       234 --~d~~~~R~VkLWDlr~  249 (568)
T PTZ00420        234 --FSKNNMREMKLWDLKN  249 (568)
T ss_pred             --cCCCCccEEEEEECCC
Confidence              44    3799999863

>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]

Probab=99.95  E-value=2.9e-26  Score=185.45  Aligned_cols=200  Identities=31%  Similarity=0.602  Sum_probs=170.2

Q ss_pred             CcCceEEEEEccCCCeEEEecCCCeEEEeecCCCCCCCCCCCCCCcc-ccCCccccccce---------------eEEEE
Q 042146           22 HLRAVSYVKFSHDGRLLTSSSAEKTLLTYSLSSISNFDSTPPSPLQK-FTGHEQGISDLA---------------TIRLW   85 (262)
Q Consensus        22 h~~~v~~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~-~~~~~~~v~~~~---------------~i~v~   85 (262)
                      |...+.+..|+  ..++++++.|++|++|+....        ..+.. +.+|...+..+.               ++++|
T Consensus       207 ~~~~~~~~q~~--~~~~~~~s~~~tl~~~~~~~~--------~~i~~~l~GH~g~V~~l~~~~~~~~lvsgS~D~t~rvW  276 (537)
T KOG0274|consen  207 DDHVVLCLQLH--DGFFKSGSDDSTLHLWDLNNG--------YLILTRLVGHFGGVWGLAFPSGGDKLVSGSTDKTERVW  276 (537)
T ss_pred             Ccchhhhheee--cCeEEecCCCceeEEeecccc--------eEEEeeccCCCCCceeEEEecCCCEEEEEecCCcEEeE
Confidence            56778899988  567999999999999976543        22233 555555544333               89999


Q ss_pred             ecCCCccceecccCCcceEEEEEeCCCCEEEeecCCCeEEEEECCCCeeeeeeecCCCCeeeEEEccCCCEEEEEeCCCe
Q 042146           86 DVPTATSLKTLIGHTNYVFCINFNPQSNRIVSDTFNETIRIWDIKTGKCLKVLPAHSDPVTAIDFNRDGTMIVTSSYDGL  165 (262)
Q Consensus        86 d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~  165 (262)
                      |..++++...+.+|...|.++...  +.++++|+.|.+|++|++++++.+..+.+|.++|.++..+  +.++++|+.|++
T Consensus       277 d~~sg~C~~~l~gh~stv~~~~~~--~~~~~sgs~D~tVkVW~v~n~~~l~l~~~h~~~V~~v~~~--~~~lvsgs~d~~  352 (537)
T KOG0274|consen  277 DCSTGECTHSLQGHTSSVRCLTID--PFLLVSGSRDNTVKVWDVTNGACLNLLRGHTGPVNCVQLD--EPLLVSGSYDGT  352 (537)
T ss_pred             ecCCCcEEEEecCCCceEEEEEcc--CceEeeccCCceEEEEeccCcceEEEeccccccEEEEEec--CCEEEEEecCce
Confidence            999999999999999999999875  5678889999999999999999999999999999999998  889999999999


Q ss_pred             EEEEeCCC------------------CCc-cEEEEEcCCCeEEEEecCCC-ceeeEEeccCCceeEEEEEEecCCCeeEE
Q 042146          166 YRILDAST------------------PNG-KFILVGTLDNTLRLWNYSTR-KILKTYSGYTNSKYCISSTFSVTNGKYIV  225 (262)
Q Consensus       166 i~~~d~~~------------------~~~-~~l~~~~~dg~i~i~d~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  225 (262)
                      |++||...                  .++ +.+++|+.|+.|++||++++ +++.++.+                     
T Consensus       353 v~VW~~~~~~cl~sl~gH~~~V~sl~~~~~~~~~Sgs~D~~IkvWdl~~~~~c~~tl~~---------------------  411 (537)
T KOG0274|consen  353 VKVWDPRTGKCLKSLSGHTGRVYSLIVDSENRLLSGSLDTTIKVWDLRTKRKCIHTLQG---------------------  411 (537)
T ss_pred             EEEEEhhhceeeeeecCCcceEEEEEecCcceEEeeeeccceEeecCCchhhhhhhhcC---------------------
Confidence            99999887                  456 99999999999999999999 89999987                     


Q ss_pred             ccccceEEEEEcCCCCeEEEeeecCCCcEEEEeecc
Q 042146          226 SHRDPVISVASHPAKNIIASGALDNDRTMKIWTQEK  261 (262)
Q Consensus       226 ~~~~~v~~~~~~p~~~~l~~~~~d~d~~i~iw~~~~  261 (262)
                       |..-+..+.+  .+++|++++  .|++|++||.++
T Consensus       412 -h~~~v~~l~~--~~~~Lvs~~--aD~~Ik~WD~~~  442 (537)
T KOG0274|consen  412 -HTSLVSSLLL--RDNFLVSSS--ADGTIKLWDAEE  442 (537)
T ss_pred             -Cccccccccc--ccceeEecc--ccccEEEeeccc
Confidence             6666655554  488999999  899999999875

>KOG0641 consensus WD40 repeat protein [General function prediction only]

Probab=99.95  E-value=3.8e-25  Score=153.55  Aligned_cols=203  Identities=19%  Similarity=0.376  Sum_probs=143.8

Q ss_pred             cccceecccCcCceEEEEEccCCCeEEEecCCCeEEEeecCCCCCCCCCCCCCCccccCCccccccceeEEEEecCCCcc
Q 042146           13 YTLTQTLNGHLRAVSYVKFSHDGRLLTSSSAEKTLLTYSLSSISNFDSTPPSPLQKFTGHEQGISDLATIRLWDVPTATS   92 (262)
Q Consensus        13 ~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~i~v~d~~~~~~   92 (262)
                      +..+.+++ ....|++++|+|.|.+.++|+..++++|-..........          +|......          ..-.
T Consensus        23 f~~i~~l~-dsqairav~fhp~g~lyavgsnskt~ric~yp~l~~~r~----------~hea~~~p----------p~v~   81 (350)
T KOG0641|consen   23 FEAINILE-DSQAIRAVAFHPAGGLYAVGSNSKTFRICAYPALIDLRH----------AHEAAKQP----------PSVL   81 (350)
T ss_pred             eEEEEEec-chhheeeEEecCCCceEEeccCCceEEEEccccccCccc----------ccccccCC----------CeEE
Confidence            33444443 567899999999999999999999999886543211100          01000000          0000


Q ss_pred             ceecccCCcceEEEEEeCCCCEEEeecCCCeEEEE---------------------------------------------
Q 042146           93 LKTLIGHTNYVFCINFNPQSNRIVSDTFNETIRIW---------------------------------------------  127 (262)
Q Consensus        93 ~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vw---------------------------------------------  127 (262)
                      .+.-+.|++.|.|.+|+|+|+++++|+.|.+|++.                                             
T Consensus        82 ~kr~khhkgsiyc~~ws~~geliatgsndk~ik~l~fn~dt~~~~g~dle~nmhdgtirdl~fld~~~s~~~il~s~gag  161 (350)
T KOG0641|consen   82 CKRNKHHKGSIYCTAWSPCGELIATGSNDKTIKVLPFNADTCNATGHDLEFNMHDGTIRDLAFLDDPESGGAILASAGAG  161 (350)
T ss_pred             eeeccccCccEEEEEecCccCeEEecCCCceEEEEecccccccccCcceeeeecCCceeeeEEecCCCcCceEEEecCCC
Confidence            11223455556666666666666666665555554                                             


Q ss_pred             -------ECCCCeeeeeeecCCCCeeeEEEccCCCEEEEEeCCCeEEEEeCCC---------------------------
Q 042146          128 -------DIKTGKCLKVLPAHSDPVTAIDFNRDGTMIVTSSYDGLYRILDAST---------------------------  173 (262)
Q Consensus       128 -------d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~d~~~---------------------------  173 (262)
                             |...++..+.+.+|.+-|.++ ++-++-++++|+.|.+|++||++.                           
T Consensus       162 dc~iy~tdc~~g~~~~a~sghtghilal-yswn~~m~~sgsqdktirfwdlrv~~~v~~l~~~~~~~glessavaav~vd  240 (350)
T KOG0641|consen  162 DCKIYITDCGRGQGFHALSGHTGHILAL-YSWNGAMFASGSQDKTIRFWDLRVNSCVNTLDNDFHDGGLESSAVAAVAVD  240 (350)
T ss_pred             cceEEEeecCCCCcceeecCCcccEEEE-EEecCcEEEccCCCceEEEEeeeccceeeeccCcccCCCcccceeEEEEEC
Confidence                   333444455556677777665 344678899999999999999886                           


Q ss_pred             CCccEEEEEcCCCeEEEEecCCCceeeEEeccCCceeEEEEEEecCCCeeEEccccceEEEEEcCCCCeEEEeeecCCCc
Q 042146          174 PNGKFILVGTLDNTLRLWNYSTRKILKTYSGYTNSKYCISSTFSVTNGKYIVSHRDPVISVASHPAKNIIASGALDNDRT  253 (262)
Q Consensus       174 ~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~d~d~~  253 (262)
                      |.|++|++|-.|....+||++.++.++.+..                      |...|.++.|+|...++.+++  .|..
T Consensus       241 psgrll~sg~~dssc~lydirg~r~iq~f~p----------------------hsadir~vrfsp~a~yllt~s--yd~~  296 (350)
T KOG0641|consen  241 PSGRLLASGHADSSCMLYDIRGGRMIQRFHP----------------------HSADIRCVRFSPGAHYLLTCS--YDMK  296 (350)
T ss_pred             CCcceeeeccCCCceEEEEeeCCceeeeeCC----------------------CccceeEEEeCCCceEEEEec--ccce
Confidence            7899999999999999999999999998877                      889999999999999999999  8999


Q ss_pred             EEEEeecc
Q 042146          254 MKIWTQEK  261 (262)
Q Consensus       254 i~iw~~~~  261 (262)
                      |++=|++.
T Consensus       297 ikltdlqg  304 (350)
T KOG0641|consen  297 IKLTDLQG  304 (350)
T ss_pred             EEEeeccc
Confidence            99988753

>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=99.95  E-value=3.4e-25  Score=168.51  Aligned_cols=192  Identities=24%  Similarity=0.465  Sum_probs=162.5

Q ss_pred             CCceeeec--ccccceecccCcCceEEEEEccCC-CeEEEecCCCeEEEeecCCCCCCCCCCCCCCccccCCccccccce
Q 042146            4 DRSLESFR--PYTLTQTLNGHLRAVSYVKFSHDG-RLLTSSSAEKTLLTYSLSSISNFDSTPPSPLQKFTGHEQGISDLA   80 (262)
Q Consensus         4 d~~i~~~~--~~~~~~~~~~h~~~v~~~~~~~~~-~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~   80 (262)
                      .|.+..|+  +...++.+.+|+.+|....|+|++ ..|++|+.|+.+++||+                            
T Consensus        89 sG~V~vfD~k~r~iLR~~~ah~apv~~~~f~~~d~t~l~s~sDd~v~k~~d~----------------------------  140 (487)
T KOG0310|consen   89 SGHVKVFDMKSRVILRQLYAHQAPVHVTKFSPQDNTMLVSGSDDKVVKYWDL----------------------------  140 (487)
T ss_pred             cCcEEEeccccHHHHHHHhhccCceeEEEecccCCeEEEecCCCceEEEEEc----------------------------
Confidence            45666776  334788899999999999999965 46777888888777755                            


Q ss_pred             eEEEEecCCCccceecccCCcceEEEEEeC-CCCEEEeecCCCeEEEEECCCC-eeeeeeecCCCCeeeEEEccCCCEEE
Q 042146           81 TIRLWDVPTATSLKTLIGHTNYVFCINFNP-QSNRIVSDTFNETIRIWDIKTG-KCLKVLPAHSDPVTAIDFNRDGTMIV  158 (262)
Q Consensus        81 ~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~dg~i~vwd~~~~-~~~~~~~~~~~~v~~~~~~~~~~~l~  158 (262)
                             .+......+.+|.+.|.|.+|+| ++..+++|+.||+|++||++.. ..+.++ .|..+|..+.+-|.|..++
T Consensus       141 -------s~a~v~~~l~~htDYVR~g~~~~~~~hivvtGsYDg~vrl~DtR~~~~~v~el-nhg~pVe~vl~lpsgs~ia  212 (487)
T KOG0310|consen  141 -------STAYVQAELSGHTDYVRCGDISPANDHIVVTGSYDGKVRLWDTRSLTSRVVEL-NHGCPVESVLALPSGSLIA  212 (487)
T ss_pred             -------CCcEEEEEecCCcceeEeeccccCCCeEEEecCCCceEEEEEeccCCceeEEe-cCCCceeeEEEcCCCCEEE
Confidence                   44445557889999999999999 5668999999999999999977 667777 4899999999999999998


Q ss_pred             EEeCCCeEEEEeCCC---------------------CCccEEEEEcCCCeEEEEecCCCceeeEEeccCCceeEEEEEEe
Q 042146          159 TSSYDGLYRILDAST---------------------PNGKFILVGTLDNTLRLWNYSTRKILKTYSGYTNSKYCISSTFS  217 (262)
Q Consensus       159 ~~~~dg~i~~~d~~~---------------------~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~  217 (262)
                      +++ ...+++||+..                     .++..|++|+-|+.+++||+.+.+.+..+.              
T Consensus       213 sAg-Gn~vkVWDl~~G~qll~~~~~H~KtVTcL~l~s~~~rLlS~sLD~~VKVfd~t~~Kvv~s~~--------------  277 (487)
T KOG0310|consen  213 SAG-GNSVKVWDLTTGGQLLTSMFNHNKTVTCLRLASDSTRLLSGSLDRHVKVFDTTNYKVVHSWK--------------  277 (487)
T ss_pred             EcC-CCeEEEEEecCCceehhhhhcccceEEEEEeecCCceEeecccccceEEEEccceEEEEeee--------------
Confidence            887 46799999884                     577999999999999999998888888887              


Q ss_pred             cCCCeeEEccccceEEEEEcCCCCeEEEeeecCCCcEEEE
Q 042146          218 VTNGKYIVSHRDPVISVASHPAKNIIASGALDNDRTMKIW  257 (262)
Q Consensus       218 ~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~d~d~~i~iw  257 (262)
                               -.++|.+++.+|+++.++.|.  .||.+.+=
T Consensus       278 ---------~~~pvLsiavs~dd~t~viGm--snGlv~~r  306 (487)
T KOG0310|consen  278 ---------YPGPVLSIAVSPDDQTVVIGM--SNGLVSIR  306 (487)
T ss_pred             ---------cccceeeEEecCCCceEEEec--ccceeeee
Confidence                     678999999999999999998  88987654

>KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair]

Probab=99.95  E-value=6.5e-26  Score=162.82  Aligned_cols=210  Identities=22%  Similarity=0.379  Sum_probs=160.6

Q ss_pred             ccCcCceEEEEEcc-CCCeEEEecCCCeEEEeecCCCCCCCCCC----CCCC---ccccCCccccccce-----------
Q 042146           20 NGHLRAVSYVKFSH-DGRLLTSSSAEKTLLTYSLSSISNFDSTP----PSPL---QKFTGHEQGISDLA-----------   80 (262)
Q Consensus        20 ~~h~~~v~~~~~~~-~~~~l~s~~~d~~i~iw~~~~~~~~~~~~----~~~~---~~~~~~~~~v~~~~-----------   80 (262)
                      ..|.+.|+++...+ .|+|+++|+.||.|.+||+++....+...    ..++   .--.+|...+..+.           
T Consensus        40 r~HgGsvNsL~id~tegrymlSGgadgsi~v~Dl~n~t~~e~s~li~k~~c~v~~~h~~~Hky~iss~~WyP~DtGmFts  119 (397)
T KOG4283|consen   40 RPHGGSVNSLQIDLTEGRYMLSGGADGSIAVFDLQNATDYEASGLIAKHKCIVAKQHENGHKYAISSAIWYPIDTGMFTS  119 (397)
T ss_pred             ccCCCccceeeeccccceEEeecCCCccEEEEEeccccchhhccceeheeeeccccCCccceeeeeeeEEeeecCceeec
Confidence            46899999999988 68999999999999999998754322111    1110   01112333333222           


Q ss_pred             -----eEEEEecCCCccceecccCCcceEEEEEeC---CCCEEEeecCCCeEEEEECCCCeeeeeeecCCCCeeeEEEcc
Q 042146           81 -----TIRLWDVPTATSLKTLIGHTNYVFCINFNP---QSNRIVSDTFNETIRIWDIKTGKCLKVLPAHSDPVTAIDFNR  152 (262)
Q Consensus        81 -----~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~---~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~  152 (262)
                           +++|||..+.+....++ ..+.|.+-+++|   ...++|+|..+-.|++.|+.+|...+.+.+|.+.|.++.|+|
T Consensus       120 sSFDhtlKVWDtnTlQ~a~~F~-me~~VYshamSp~a~sHcLiA~gtr~~~VrLCDi~SGs~sH~LsGHr~~vlaV~Wsp  198 (397)
T KOG4283|consen  120 SSFDHTLKVWDTNTLQEAVDFK-MEGKVYSHAMSPMAMSHCLIAAGTRDVQVRLCDIASGSFSHTLSGHRDGVLAVEWSP  198 (397)
T ss_pred             ccccceEEEeecccceeeEEee-cCceeehhhcChhhhcceEEEEecCCCcEEEEeccCCcceeeeccccCceEEEEecc
Confidence                 99999999988877765 457788888888   355788999999999999999999999999999999999999


Q ss_pred             CCC-EEEEEeCCCeEEEEeCCCCCccEEEEEcCCCeEEEEecCCCceeeEEeccCCceeEEEEEEecCCCeeEEccccce
Q 042146          153 DGT-MIVTSSYDGLYRILDASTPNGKFILVGTLDNTLRLWNYSTRKILKTYSGYTNSKYCISSTFSVTNGKYIVSHRDPV  231 (262)
Q Consensus       153 ~~~-~l~~~~~dg~i~~~d~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v  231 (262)
                      ... .|++|+.||.|++||+|...          |..++.|..+++....++...                   +|.+.|
T Consensus       199 ~~e~vLatgsaDg~irlWDiRras----------gcf~~lD~hn~k~~p~~~~n~-------------------ah~gkv  249 (397)
T KOG4283|consen  199 SSEWVLATGSADGAIRLWDIRRAS----------GCFRVLDQHNTKRPPILKTNT-------------------AHYGKV  249 (397)
T ss_pred             CceeEEEecCCCceEEEEEeeccc----------ceeEEeecccCccCccccccc-------------------ccccee
Confidence            766 58889999999999998632          445666666544333333110                   189999


Q ss_pred             EEEEEcCCCCeEEEeeecCCCcEEEEeecc
Q 042146          232 ISVASHPAKNIIASGALDNDRTMKIWTQEK  261 (262)
Q Consensus       232 ~~~~~~p~~~~l~~~~~d~d~~i~iw~~~~  261 (262)
                      ..++|..++.++++.+  .|..+++|+..+
T Consensus       250 ngla~tSd~~~l~~~g--td~r~r~wn~~~  277 (397)
T KOG4283|consen  250 NGLAWTSDARYLASCG--TDDRIRVWNMES  277 (397)
T ss_pred             eeeeecccchhhhhcc--CccceEEeeccc
Confidence            9999999999999999  889999999864

>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]

Probab=99.94  E-value=2.2e-25  Score=168.41  Aligned_cols=205  Identities=20%  Similarity=0.412  Sum_probs=165.3

Q ss_pred             ccCcCceEEEEEccCCCeEEEecCCCeEEEeecCCCCCCCCCCCCCCccccCCccccccce---------------eEEE
Q 042146           20 NGHLRAVSYVKFSHDGRLLTSSSAEKTLLTYSLSSISNFDSTPPSPLQKFTGHEQGISDLA---------------TIRL   84 (262)
Q Consensus        20 ~~h~~~v~~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~---------------~i~v   84 (262)
                      ++|.+.+.+++.++||+|||+|+.|..|.||+.++.        ..+..+.+|...|..++               .+++
T Consensus       199 ~~h~keil~~avS~Dgkylatgg~d~~v~Iw~~~t~--------ehv~~~~ghr~~V~~L~fr~gt~~lys~s~Drsvkv  270 (479)
T KOG0299|consen  199 KGHVKEILTLAVSSDGKYLATGGRDRHVQIWDCDTL--------EHVKVFKGHRGAVSSLAFRKGTSELYSASADRSVKV  270 (479)
T ss_pred             ccccceeEEEEEcCCCcEEEecCCCceEEEecCccc--------chhhcccccccceeeeeeecCccceeeeecCCceEE
Confidence            489999999999999999999999999999976653        34444666666665544               8999


Q ss_pred             EecCCCccceecccCCcceEEEEEeCCCCEEEeecCCCeEEEEECCCCeeeeeeecCCCCeeeEEEccCCCEEEEEeCCC
Q 042146           85 WDVPTATSLKTLIGHTNYVFCINFNPQSNRIVSDTFNETIRIWDIKTGKCLKVLPAHSDPVTAIDFNRDGTMIVTSSYDG  164 (262)
Q Consensus        85 ~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg  164 (262)
                      |+++....+.++.+|.+.|..|....-++.+.+|+.|.++++|++... ....+.+|.+.+-|++|-. ..+|++|+.+|
T Consensus       271 w~~~~~s~vetlyGHqd~v~~IdaL~reR~vtVGgrDrT~rlwKi~ee-sqlifrg~~~sidcv~~In-~~HfvsGSdnG  348 (479)
T KOG0299|consen  271 WSIDQLSYVETLYGHQDGVLGIDALSRERCVTVGGRDRTVRLWKIPEE-SQLIFRGGEGSIDCVAFIN-DEHFVSGSDNG  348 (479)
T ss_pred             EehhHhHHHHHHhCCccceeeechhcccceEEeccccceeEEEecccc-ceeeeeCCCCCeeeEEEec-ccceeeccCCc
Confidence            999999999999999999999998888888888889999999999543 3345678888999999974 56899999999


Q ss_pred             eEEEEeCCC--------------------------------CCccEEEEEcCCCeEEEEecCCC----ceeeEEeccCCc
Q 042146          165 LYRILDAST--------------------------------PNGKFILVGTLDNTLRLWNYSTR----KILKTYSGYTNS  208 (262)
Q Consensus       165 ~i~~~d~~~--------------------------------~~~~~l~~~~~dg~i~i~d~~~~----~~~~~~~~~~~~  208 (262)
                      .|.+|++..                                +..+++++|+.+|.|++|-+..+    +++..++     
T Consensus       349 ~IaLWs~~KKkplf~~~~AHgv~~~~~~~~~~~Witsla~i~~sdL~asGS~~G~vrLW~i~~g~r~i~~l~~ls-----  423 (479)
T KOG0299|consen  349 SIALWSLLKKKPLFTSRLAHGVIPELDPVNGNFWITSLAVIPGSDLLASGSWSGCVRLWKIEDGLRAINLLYSLS-----  423 (479)
T ss_pred             eEEEeeecccCceeEeeccccccCCccccccccceeeeEecccCceEEecCCCCceEEEEecCCccccceeeecc-----
Confidence            999999765                                56788999999999999998876    2333333     


Q ss_pred             eeEEEEEEecCCCeeEEccccceEEEEEcCCCCeEEEeeecCCCcEEEEe
Q 042146          209 KYCISSTFSVTNGKYIVSHRDPVISVASHPAKNIIASGALDNDRTMKIWT  258 (262)
Q Consensus       209 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~d~d~~i~iw~  258 (262)
                                        -.+-|++++|+++|+.+++|-. ....+-=|.
T Consensus       424 ------------------~~GfVNsl~f~~sgk~ivagiG-kEhRlGRW~  454 (479)
T KOG0299|consen  424 ------------------LVGFVNSLAFSNSGKRIVAGIG-KEHRLGRWW  454 (479)
T ss_pred             ------------------cccEEEEEEEccCCCEEEEecc-cccccceee
Confidence                              4567999999999996666541 344443343

>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=99.94  E-value=1.3e-25  Score=176.41  Aligned_cols=255  Identities=20%  Similarity=0.339  Sum_probs=190.8

Q ss_pred             CCCCceeeecccc----cceecccCcCceEEEEE-ccCCCeEEEecCCCeEEEeecCCCCC--CCCCCCCCCcccc-CCc
Q 042146            2 SSDRSLESFRPYT----LTQTLNGHLRAVSYVKF-SHDGRLLTSSSAEKTLLTYSLSSISN--FDSTPPSPLQKFT-GHE   73 (262)
Q Consensus         2 s~d~~i~~~~~~~----~~~~~~~h~~~v~~~~~-~~~~~~l~s~~~d~~i~iw~~~~~~~--~~~~~~~~~~~~~-~~~   73 (262)
                      |+|-+++.|....    ...++..|..-|.|+++ -++...+|+||-|+.|.+||+.....  ...........+. ++.
T Consensus        92 SsDtTVK~W~~~~~~~~c~stir~H~DYVkcla~~ak~~~lvaSgGLD~~IflWDin~~~~~l~~s~n~~t~~sl~sG~k  171 (735)
T KOG0308|consen   92 SSDTTVKVWNAHKDNTFCMSTIRTHKDYVKCLAYIAKNNELVASGGLDRKIFLWDINTGTATLVASFNNVTVNSLGSGPK  171 (735)
T ss_pred             cCCceEEEeecccCcchhHhhhhcccchheeeeecccCceeEEecCCCccEEEEEccCcchhhhhhccccccccCCCCCc
Confidence            6788999997544    46788999999999999 77888999999999999999986522  1122222222233 555


Q ss_pred             cccccce---------------eEEEEecCCCccceecccCCcceEEEEEeCCCCEEEeecCCCeEEEEECCCCeeeeee
Q 042146           74 QGISDLA---------------TIRLWDVPTATSLKTLIGHTNYVFCINFNPQSNRIVSDTFNETIRIWDIKTGKCLKVL  138 (262)
Q Consensus        74 ~~v~~~~---------------~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~  138 (262)
                      .++++++               .+++||.++.+.+..+++|...|.++..++||+.++++++||+|++||+...+++.++
T Consensus       172 ~siYSLA~N~t~t~ivsGgtek~lr~wDprt~~kimkLrGHTdNVr~ll~~dDGt~~ls~sSDgtIrlWdLgqQrCl~T~  251 (735)
T KOG0308|consen  172 DSIYSLAMNQTGTIIVSGGTEKDLRLWDPRTCKKIMKLRGHTDNVRVLLVNDDGTRLLSASSDGTIRLWDLGQQRCLATY  251 (735)
T ss_pred             cceeeeecCCcceEEEecCcccceEEeccccccceeeeeccccceEEEEEcCCCCeEeecCCCceEEeeeccccceeeeE
Confidence            5555554               8999999999999999999999999999999999999999999999999999999999


Q ss_pred             ecCCCCeeeEEEccCCCEEEEEeCCCeEEEEeCCCC--------------------CccEEEEEcCCCeEEEEecCCCce
Q 042146          139 PAHSDPVTAIDFNRDGTMIVTSSYDGLYRILDASTP--------------------NGKFILVGTLDNTLRLWNYSTRKI  198 (262)
Q Consensus       139 ~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~d~~~~--------------------~~~~l~~~~~dg~i~i~d~~~~~~  198 (262)
                      ..|+..|+++..+|+-.++++|+.||.|..=|++++                    ..+-+-+++.|+.|+-|..+....
T Consensus       252 ~vH~e~VWaL~~~~sf~~vYsG~rd~~i~~Tdl~n~~~~tlick~daPv~~l~~~~~~~~~WvtTtds~I~rW~~~~~~~  331 (735)
T KOG0308|consen  252 IVHKEGVWALQSSPSFTHVYSGGRDGNIYRTDLRNPAKSTLICKEDAPVLKLHLHEHDNSVWVTTTDSSIKRWKLEPDIA  331 (735)
T ss_pred             EeccCceEEEeeCCCcceEEecCCCCcEEecccCCchhheEeecCCCchhhhhhccccCCceeeeccccceecCCccccc
Confidence            999999999999999999999999999999999881                    123346778888999997653222


Q ss_pred             eeEEeccCCceeEEEEEEec----CCCeeEEccccceEEEEEcCCCCeEEEeeecCCCcEEEEeec
Q 042146          199 LKTYSGYTNSKYCISSTFSV----TNGKYIVSHRDPVISVASHPAKNIIASGALDNDRTMKIWTQE  260 (262)
Q Consensus       199 ~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~d~d~~i~iw~~~  260 (262)
                      +........  .+.......    ..-..+.....+|...+.-.+.+.++|=.  ..|.+.+||+-
T Consensus       332 l~~s~~~~~--~~T~~~~~~~~~~~tp~~vi~Gg~ai~k~~mL~dkRhVlTkD--a~gnv~lwDIl  393 (735)
T KOG0308|consen  332 LSVSGDLDF--FSTDSNNHSCDLTNTPDSVIPGGAAIKKHAMLNDKRHVLTKD--AKGNVALWDIL  393 (735)
T ss_pred             cccCCCCCc--ccccCCCccccccCCCceeccCchhhhhhhhhcCcceEeeec--CCCCEEEEEee
Confidence            111111000  000000000    00111111234566667777899999988  89999999984

>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]

Probab=99.94  E-value=3.5e-25  Score=175.01  Aligned_cols=219  Identities=21%  Similarity=0.388  Sum_probs=171.3

Q ss_pred             CCCCceeeecc----cccceecccCcCceEE-EEEcc-CCCeEEEecCCCeEEEeecCCCCCCCCCCCCCCccccCCccc
Q 042146            2 SSDRSLESFRP----YTLTQTLNGHLRAVSY-VKFSH-DGRLLTSSSAEKTLLTYSLSSISNFDSTPPSPLQKFTGHEQG   75 (262)
Q Consensus         2 s~d~~i~~~~~----~~~~~~~~~h~~~v~~-~~~~~-~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~   75 (262)
                      |+||+++.|.+    +...+.+.+|.+-|.+ ++|-+ ++-.+++|++|.+|.+|        ......+...+.+|...
T Consensus        32 sRd~t~~vw~~~~~~~l~~~~~~~~~g~i~~~i~y~e~~~~~l~~g~~D~~i~v~--------~~~~~~P~~~LkgH~sn  103 (745)
T KOG0301|consen   32 SRDGTVKVWAKKGKQYLETHAFEGPKGFIANSICYAESDKGRLVVGGMDTTIIVF--------KLSQAEPLYTLKGHKSN  103 (745)
T ss_pred             CCCCceeeeeccCcccccceecccCcceeeccceeccccCcceEeecccceEEEE--------ecCCCCchhhhhccccc
Confidence            57999999975    3345667888888887 88875 44569999999999999        55556777778888877


Q ss_pred             cccce--------------eEEEEecCCCccceecccCCcceEEEEEeCCCCEEEeecCCCeEEEEECCCCeeeeeeecC
Q 042146           76 ISDLA--------------TIRLWDVPTATSLKTLIGHTNYVFCINFNPQSNRIVSDTFNETIRIWDIKTGKCLKVLPAH  141 (262)
Q Consensus        76 v~~~~--------------~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~  141 (262)
                      |.++.              ++++|..  +++...+++|...|++++.-|++ .+++|+.|.+|++|.-  ++.++++.+|
T Consensus       104 VC~ls~~~~~~~iSgSWD~TakvW~~--~~l~~~l~gH~asVWAv~~l~e~-~~vTgsaDKtIklWk~--~~~l~tf~gH  178 (745)
T KOG0301|consen  104 VCSLSIGEDGTLISGSWDSTAKVWRI--GELVYSLQGHTASVWAVASLPEN-TYVTGSADKTIKLWKG--GTLLKTFSGH  178 (745)
T ss_pred             eeeeecCCcCceEecccccceEEecc--hhhhcccCCcchheeeeeecCCC-cEEeccCcceeeeccC--Cchhhhhccc
Confidence            76655              7888886  45666799999999999999987 8899999999999964  7889999999


Q ss_pred             CCCeeeEEEccCCCEEEEEeCCCeEEEEeCCC-------------------CCccEEEEEcCCCeEEEEecCCCceeeEE
Q 042146          142 SDPVTAIDFNRDGTMIVTSSYDGLYRILDAST-------------------PNGKFILVGTLDNTLRLWNYSTRKILKTY  202 (262)
Q Consensus       142 ~~~v~~~~~~~~~~~l~~~~~dg~i~~~d~~~-------------------~~~~~l~~~~~dg~i~i~d~~~~~~~~~~  202 (262)
                      .+-|..+++-+++ .|++|+.||.|++|++..                   .++..++++++|++++||+..  ++.+.+
T Consensus       179 tD~VRgL~vl~~~-~flScsNDg~Ir~w~~~ge~l~~~~ghtn~vYsis~~~~~~~Ivs~gEDrtlriW~~~--e~~q~I  255 (745)
T KOG0301|consen  179 TDCVRGLAVLDDS-HFLSCSNDGSIRLWDLDGEVLLEMHGHTNFVYSISMALSDGLIVSTGEDRTLRIWKKD--ECVQVI  255 (745)
T ss_pred             hhheeeeEEecCC-CeEeecCCceEEEEeccCceeeeeeccceEEEEEEecCCCCeEEEecCCceEEEeecC--ceEEEE
Confidence            9999999998754 689999999999999954                   678899999999999999876  777777


Q ss_pred             eccCCceeEEEEEEecCCCeeEEccccceEEEEEcC
Q 042146          203 SGYTNSKYCISSTFSVTNGKYIVSHRDPVISVASHP  238 (262)
Q Consensus       203 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p  238 (262)
                      .-....+++..+.  ..+.-++.+.++.|+-..-++
T Consensus       256 ~lPttsiWsa~~L--~NgDIvvg~SDG~VrVfT~~k  289 (745)
T KOG0301|consen  256 TLPTTSIWSAKVL--LNGDIVVGGSDGRVRVFTVDK  289 (745)
T ss_pred             ecCccceEEEEEe--eCCCEEEeccCceEEEEEecc
Confidence            7655566555433  223333333445555444443

>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]

Probab=99.94  E-value=1.2e-24  Score=157.38  Aligned_cols=195  Identities=23%  Similarity=0.353  Sum_probs=159.5

Q ss_pred             CCceeeec--ccccceecccCcCceEEEEEccCCCeEEEecCCCeEEEeecCCCCCCCCCCCCCCccccCCcccccccee
Q 042146            4 DRSLESFR--PYTLTQTLNGHLRAVSYVKFSHDGRLLTSSSAEKTLLTYSLSSISNFDSTPPSPLQKFTGHEQGISDLAT   81 (262)
Q Consensus         4 d~~i~~~~--~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~   81 (262)
                      |.+|+.+.  ..+.++.+.||...|++++.+|-+..+++++.|++|++||+.                            
T Consensus        79 d~tIryLsl~dNkylRYF~GH~~~V~sL~~sP~~d~FlS~S~D~tvrLWDlR----------------------------  130 (311)
T KOG1446|consen   79 DDTIRYLSLHDNKYLRYFPGHKKRVNSLSVSPKDDTFLSSSLDKTVRLWDLR----------------------------  130 (311)
T ss_pred             CCceEEEEeecCceEEEcCCCCceEEEEEecCCCCeEEecccCCeEEeeEec----------------------------
Confidence            56677664  667899999999999999999999999999999999999664                            


Q ss_pred             EEEEecCCCccceecccCCcceEEEEEeCCCCEEEeecCCCeEEEEECCCC--eeeeeee---cCCCCeeeEEEccCCCE
Q 042146           82 IRLWDVPTATSLKTLIGHTNYVFCINFNPQSNRIVSDTFNETIRIWDIKTG--KCLKVLP---AHSDPVTAIDFNRDGTM  156 (262)
Q Consensus        82 i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~--~~~~~~~---~~~~~v~~~~~~~~~~~  156 (262)
                             ..++...+..  ..-..++|+|+|-++|++.....|++||++.-  .+..++.   .-....+.|.|+|+|+.
T Consensus       131 -------~~~cqg~l~~--~~~pi~AfDp~GLifA~~~~~~~IkLyD~Rs~dkgPF~tf~i~~~~~~ew~~l~FS~dGK~  201 (311)
T KOG1446|consen  131 -------VKKCQGLLNL--SGRPIAAFDPEGLIFALANGSELIKLYDLRSFDKGPFTTFSITDNDEAEWTDLEFSPDGKS  201 (311)
T ss_pred             -------CCCCceEEec--CCCcceeECCCCcEEEEecCCCeEEEEEecccCCCCceeEccCCCCccceeeeEEcCCCCE
Confidence                   2333333321  22235789999999999998889999999864  2333332   23567899999999999


Q ss_pred             EEEEeCCCeEEEEeCCC-----------------------CCccEEEEEcCCCeEEEEecCCCceeeEEeccCCceeEEE
Q 042146          157 IVTSSYDGLYRILDAST-----------------------PNGKFILVGTLDNTLRLWNYSTRKILKTYSGYTNSKYCIS  213 (262)
Q Consensus       157 l~~~~~dg~i~~~d~~~-----------------------~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~  213 (262)
                      |+.+...+.+++.|.-.                       |+++++++|+.||+|.+|++++++.+..+.+.        
T Consensus       202 iLlsT~~s~~~~lDAf~G~~~~tfs~~~~~~~~~~~a~ftPds~Fvl~gs~dg~i~vw~~~tg~~v~~~~~~--------  273 (311)
T KOG1446|consen  202 ILLSTNASFIYLLDAFDGTVKSTFSGYPNAGNLPLSATFTPDSKFVLSGSDDGTIHVWNLETGKKVAVLRGP--------  273 (311)
T ss_pred             EEEEeCCCcEEEEEccCCcEeeeEeeccCCCCcceeEEECCCCcEEEEecCCCcEEEEEcCCCcEeeEecCC--------
Confidence            99999999999999654                       99999999999999999999999999998863        


Q ss_pred             EEEecCCCeeEEccccceEEEEEcCCCCeEEEeeecCCCcEEEEeec
Q 042146          214 STFSVTNGKYIVSHRDPVISVASHPAKNIIASGALDNDRTMKIWTQE  260 (262)
Q Consensus       214 ~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~d~d~~i~iw~~~  260 (262)
                                   +..++.++.|+|.-.++++++    ..+-+|-+.
T Consensus       274 -------------~~~~~~~~~fnP~~~mf~sa~----s~l~fw~p~  303 (311)
T KOG1446|consen  274 -------------NGGPVSCVRFNPRYAMFVSAS----SNLVFWLPD  303 (311)
T ss_pred             -------------CCCCccccccCCceeeeeecC----ceEEEEecc
Confidence                         567889999999999999886    478888654

>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics]

Probab=99.94  E-value=4.9e-25  Score=166.21  Aligned_cols=179  Identities=25%  Similarity=0.444  Sum_probs=145.5

Q ss_pred             cceecccCcCceEEEEEccCCC-eEEEecCCCeEEEeecCCCCCCCCCCCCCCccccCCccccccce-------------
Q 042146           15 LTQTLNGHLRAVSYVKFSHDGR-LLTSSSAEKTLLTYSLSSISNFDSTPPSPLQKFTGHEQGISDLA-------------   80 (262)
Q Consensus        15 ~~~~~~~h~~~v~~~~~~~~~~-~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~-------------   80 (262)
                      +-.++.+|++.-.++.|++... .|++++.|++|.+||+...... .....+...+.+|...+..+.             
T Consensus       169 Pdl~L~gH~~eg~glsWn~~~~g~Lls~~~d~~i~lwdi~~~~~~-~~~~~p~~~~~~h~~~VeDV~~h~~h~~lF~sv~  247 (422)
T KOG0264|consen  169 PDLRLKGHEKEGYGLSWNRQQEGTLLSGSDDHTICLWDINAESKE-DKVVDPKTIFSGHEDVVEDVAWHPLHEDLFGSVG  247 (422)
T ss_pred             CceEEEeecccccccccccccceeEeeccCCCcEEEEeccccccC-CccccceEEeecCCcceehhhccccchhhheeec
Confidence            3448899999888999999644 7999999999999999765432 222334455666666554444             


Q ss_pred             ---eEEEEecC--CCccceecccCCcceEEEEEeC-CCCEEEeecCCCeEEEEECCCC-eeeeeeecCCCCeeeEEEccC
Q 042146           81 ---TIRLWDVP--TATSLKTLIGHTNYVFCINFNP-QSNRIVSDTFNETIRIWDIKTG-KCLKVLPAHSDPVTAIDFNRD  153 (262)
Q Consensus        81 ---~i~v~d~~--~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~dg~i~vwd~~~~-~~~~~~~~~~~~v~~~~~~~~  153 (262)
                         .+.+||++  +.++.+...+|.++|+|++|+| ++..||+|+.|++|.+||+|+. ++++.+.+|+..|.++.|+|+
T Consensus       248 dd~~L~iwD~R~~~~~~~~~~~ah~~~vn~~~fnp~~~~ilAT~S~D~tV~LwDlRnL~~~lh~~e~H~dev~~V~WSPh  327 (422)
T KOG0264|consen  248 DDGKLMIWDTRSNTSKPSHSVKAHSAEVNCVAFNPFNEFILATGSADKTVALWDLRNLNKPLHTFEGHEDEVFQVEWSPH  327 (422)
T ss_pred             CCCeEEEEEcCCCCCCCcccccccCCceeEEEeCCCCCceEEeccCCCcEEEeechhcccCceeccCCCcceEEEEeCCC
Confidence               89999999  5566677889999999999999 7778899999999999999964 578899999999999999994


Q ss_pred             -CCEEEEEeCCCeEEEEeCCC----------------------------------CCc-cEEEEEcCCCeEEEEecC
Q 042146          154 -GTMIVTSSYDGLYRILDAST----------------------------------PNG-KFILVGTLDNTLRLWNYS  194 (262)
Q Consensus       154 -~~~l~~~~~dg~i~~~d~~~----------------------------------~~~-~~l~~~~~dg~i~i~d~~  194 (262)
                       ...|++++.|+.+.+||+..                                  |+. -.+++.++|+.+.||.+.
T Consensus       328 ~etvLASSg~D~rl~vWDls~ig~eq~~eda~dgppEllF~HgGH~~kV~DfsWnp~ePW~I~SvaeDN~LqIW~~s  404 (422)
T KOG0264|consen  328 NETVLASSGTDRRLNVWDLSRIGEEQSPEDAEDGPPELLFIHGGHTAKVSDFSWNPNEPWTIASVAEDNILQIWQMA  404 (422)
T ss_pred             CCceeEecccCCcEEEEeccccccccChhhhccCCcceeEEecCcccccccccCCCCCCeEEEEecCCceEEEeecc
Confidence             56899999999999999876                                  344 457778899999999876

>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.94  E-value=5.2e-26  Score=159.09  Aligned_cols=187  Identities=24%  Similarity=0.430  Sum_probs=155.7

Q ss_pred             cccCcCceEEEEEccCCCeEEEecCCCeEEEeecCCCCCCCCCCCCCCccccCCccccccceeEEEEecCCCccceeccc
Q 042146           19 LNGHLRAVSYVKFSHDGRLLTSSSAEKTLLTYSLSSISNFDSTPPSPLQKFTGHEQGISDLATIRLWDVPTATSLKTLIG   98 (262)
Q Consensus        19 ~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~i~v~d~~~~~~~~~~~~   98 (262)
                      -..|...|..+...-.|+.|||++.|++|+|+...+..                                ..+.+.++.+
T Consensus         7 dt~H~D~IHda~lDyygkrlATcsSD~tVkIf~v~~n~--------------------------------~s~ll~~L~G   54 (299)
T KOG1332|consen    7 DTQHEDMIHDAQLDYYGKRLATCSSDGTVKIFEVRNNG--------------------------------QSKLLAELTG   54 (299)
T ss_pred             hhhhhhhhhHhhhhhhcceeeeecCCccEEEEEEcCCC--------------------------------CceeeeEecC
Confidence            35788889888888889999999999999999765410                                1256778999


Q ss_pred             CCcceEEEEEeC--CCCEEEeecCCCeEEEEECCCCe--eeeeeecCCCCeeeEEEccC--CCEEEEEeCCCeEEEEeCC
Q 042146           99 HTNYVFCINFNP--QSNRIVSDTFNETIRIWDIKTGK--CLKVLPAHSDPVTAIDFNRD--GTMIVTSSYDGLYRILDAS  172 (262)
Q Consensus        99 ~~~~v~~~~~~~--~~~~l~~~~~dg~i~vwd~~~~~--~~~~~~~~~~~v~~~~~~~~--~~~l~~~~~dg~i~~~d~~  172 (262)
                      |.++|..++|..  .|.+|++++.||.|.||.-++++  ..+....|...|++++|.|.  |-.|++++.||.|.+++.+
T Consensus        55 h~GPVwqv~wahPk~G~iLAScsYDgkVIiWke~~g~w~k~~e~~~h~~SVNsV~wapheygl~LacasSDG~vsvl~~~  134 (299)
T KOG1332|consen   55 HSGPVWKVAWAHPKFGTILASCSYDGKVIIWKEENGRWTKAYEHAAHSASVNSVAWAPHEYGLLLACASSDGKVSVLTYD  134 (299)
T ss_pred             CCCCeeEEeecccccCcEeeEeecCceEEEEecCCCchhhhhhhhhhcccceeecccccccceEEEEeeCCCcEEEEEEc
Confidence            999999999965  89999999999999999987763  34556789999999999994  5689999999999999877


Q ss_pred             C-----------------------C--------------CccEEEEEcCCCeEEEEecCCCc--eeeEEeccCCceeEEE
Q 042146          173 T-----------------------P--------------NGKFILVGTLDNTLRLWNYSTRK--ILKTYSGYTNSKYCIS  213 (262)
Q Consensus       173 ~-----------------------~--------------~~~~l~~~~~dg~i~i~d~~~~~--~~~~~~~~~~~~~~~~  213 (262)
                      .                       |              .-+.|++|+.|..|+||+...++  ..+++.+         
T Consensus       135 ~~g~w~t~ki~~aH~~GvnsVswapa~~~g~~~~~~~~~~~krlvSgGcDn~VkiW~~~~~~w~~e~~l~~---------  205 (299)
T KOG1332|consen  135 SSGGWTTSKIVFAHEIGVNSVSWAPASAPGSLVDQGPAAKVKRLVSGGCDNLVKIWKFDSDSWKLERTLEG---------  205 (299)
T ss_pred             CCCCccchhhhhccccccceeeecCcCCCccccccCcccccceeeccCCccceeeeecCCcchhhhhhhhh---------
Confidence            6                       1              12679999999999999998763  3344555         


Q ss_pred             EEEecCCCeeEEccccceEEEEEcCCC----CeEEEeeecCCCcEEEEeecc
Q 042146          214 STFSVTNGKYIVSHRDPVISVASHPAK----NIIASGALDNDRTMKIWTQEK  261 (262)
Q Consensus       214 ~~~~~~~~~~~~~~~~~v~~~~~~p~~----~~l~~~~~d~d~~i~iw~~~~  261 (262)
                                   |.+-|+.++|.|.-    ..||+++  .||++.||..++
T Consensus       206 -------------H~dwVRDVAwaP~~gl~~s~iAS~S--qDg~viIwt~~~  242 (299)
T KOG1332|consen  206 -------------HKDWVRDVAWAPSVGLPKSTIASCS--QDGTVIIWTKDE  242 (299)
T ss_pred             -------------cchhhhhhhhccccCCCceeeEEec--CCCcEEEEEecC
Confidence                         99999999999964    5799999  999999998764

>KOG1408 consensus WD40 repeat protein [Function unknown]

Probab=99.94  E-value=1.1e-24  Score=173.23  Aligned_cols=233  Identities=15%  Similarity=0.275  Sum_probs=175.9

Q ss_pred             eEEEEEccCCCeEEEecCCCeEEEeecCCCCCCCCCC-----CCCC---------------ccccC-CccccccceeEEE
Q 042146           26 VSYVKFSHDGRLLTSSSAEKTLLTYSLSSISNFDSTP-----PSPL---------------QKFTG-HEQGISDLATIRL   84 (262)
Q Consensus        26 v~~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~-----~~~~---------------~~~~~-~~~~v~~~~~i~v   84 (262)
                      ..++.|.|....|...-.|..|+|||+..........     ...+               ..++. .-......++|++
T Consensus       327 ~IA~~Fdet~~klscVYndhSlYvWDvrD~~kvgk~~s~lyHS~ciW~Ve~~p~nv~~~~~aclp~~cF~TCSsD~TIRl  406 (1080)
T KOG1408|consen  327 AIACQFDETTDKLSCVYNDHSLYVWDVRDVNKVGKCSSMLYHSACIWDVENLPCNVHSPTAACLPRGCFTTCSSDGTIRL  406 (1080)
T ss_pred             eeEEEecCCCceEEEEEcCceEEEEeccccccccceeeeeeccceeeeeccccccccCcccccCCccceeEecCCCcEEE
Confidence            3467899988999999999999999998643221100     0000               11110 0111233449999


Q ss_pred             EecCCCccce-------------------------------------ecccCCcceEEEEEeCCCCEEEeecCCCeEEEE
Q 042146           85 WDVPTATSLK-------------------------------------TLIGHTNYVFCINFNPQSNRIVSDTFNETIRIW  127 (262)
Q Consensus        85 ~d~~~~~~~~-------------------------------------~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vw  127 (262)
                      |++..+..-.                                     ......-.+.+++++|++++|++|..-|.++||
T Consensus       407 W~l~~ctnn~vyrRNils~~l~ki~y~d~~~q~~~d~~~~~fdka~~s~~d~r~G~R~~~vSp~gqhLAsGDr~GnlrVy  486 (1080)
T KOG1408|consen  407 WDLAFCTNNQVYRRNILSANLSKIPYEDSTQQIMHDASAGIFDKALVSTCDSRFGFRALAVSPDGQHLASGDRGGNLRVY  486 (1080)
T ss_pred             eecccccccceeecccchhhhhcCccccCchhhhhhccCCcccccchhhcCcccceEEEEECCCcceecccCccCceEEE
Confidence            9986521100                                     001233568999999999999999999999999


Q ss_pred             ECCCCeeeeeeecCCCCeeeEEEcc---CCCEEEEEeCCCeEEEEeCCC-------------------------------
Q 042146          128 DIKTGKCLKVLPAHSDPVTAIDFNR---DGTMIVTSSYDGLYRILDAST-------------------------------  173 (262)
Q Consensus       128 d~~~~~~~~~~~~~~~~v~~~~~~~---~~~~l~~~~~dg~i~~~d~~~-------------------------------  173 (262)
                      ++...+....+.+|...|.|+.|+.   ..++|++++.|+.|.+||+..                               
T Consensus       487 ~Lq~l~~~~~~eAHesEilcLeyS~p~~~~kLLASasrdRlIHV~Dv~rny~l~qtld~HSssITsvKFa~~gln~~Mis  566 (1080)
T KOG1408|consen  487 DLQELEYTCFMEAHESEILCLEYSFPVLTNKLLASASRDRLIHVYDVKRNYDLVQTLDGHSSSITSVKFACNGLNRKMIS  566 (1080)
T ss_pred             EehhhhhhhheecccceeEEEeecCchhhhHhhhhccCCceEEEEecccccchhhhhcccccceeEEEEeecCCceEEEe
Confidence            9999888888999999999999986   346899999999999999765                               


Q ss_pred             ---------------------------------------CCccEEEEEcCCCeEEEEecCCCceeeEEeccCCc-eeEEE
Q 042146          174 ---------------------------------------PNGKFILVGTLDNTLRLWNYSTRKILKTYSGYTNS-KYCIS  213 (262)
Q Consensus       174 ---------------------------------------~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~-~~~~~  213 (262)
                                                             |+.+++++++.|..|+|||+..|++.+.|++.... ...+.
T Consensus       567 cGADksimFr~~qk~~~g~~f~r~t~t~~ktTlYDm~Vdp~~k~v~t~cQDrnirif~i~sgKq~k~FKgs~~~eG~lIK  646 (1080)
T KOG1408|consen  567 CGADKSIMFRVNQKASSGRLFPRHTQTLSKTTLYDMAVDPTSKLVVTVCQDRNIRIFDIESGKQVKSFKGSRDHEGDLIK  646 (1080)
T ss_pred             ccCchhhheehhccccCceeccccccccccceEEEeeeCCCcceEEEEecccceEEEeccccceeeeecccccCCCceEE
Confidence                                                   77899999999999999999999999999875433 44444


Q ss_pred             EEEecCCCeeE----------------------EccccceEEEEEcCCCCeEEEeeecCCCcEEEEeec
Q 042146          214 STFSVTNGKYI----------------------VSHRDPVISVASHPAKNIIASGALDNDRTMKIWTQE  260 (262)
Q Consensus       214 ~~~~~~~~~~~----------------------~~~~~~v~~~~~~p~~~~l~~~~~d~d~~i~iw~~~  260 (262)
                      +...+...++.                      .+|...|+.+.|.+|-+.|++.+  .||.|.||++.
T Consensus       647 v~lDPSgiY~atScsdktl~~~Df~sgEcvA~m~GHsE~VTG~kF~nDCkHlISvs--gDgCIFvW~lp  713 (1080)
T KOG1408|consen  647 VILDPSGIYLATSCSDKTLCFVDFVSGECVAQMTGHSEAVTGVKFLNDCKHLISVS--GDGCIFVWKLP  713 (1080)
T ss_pred             EEECCCccEEEEeecCCceEEEEeccchhhhhhcCcchheeeeeecccchhheeec--CCceEEEEECc
Confidence            44443333322                      23999999999999999999999  89999999985

>KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=99.94  E-value=4.6e-24  Score=153.99  Aligned_cols=208  Identities=20%  Similarity=0.343  Sum_probs=161.4

Q ss_pred             ccCcCceEEEEEccCCCeEEEecCCCeEEEeecCCCCCCCCCCCCCCccccCCccccccceeEEEEecCCCccceecccC
Q 042146           20 NGHLRAVSYVKFSHDGRLLTSSSAEKTLLTYSLSSISNFDSTPPSPLQKFTGHEQGISDLATIRLWDVPTATSLKTLIGH   99 (262)
Q Consensus        20 ~~h~~~v~~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~i~v~d~~~~~~~~~~~~~   99 (262)
                      .+|..-|.|+.|.+.|+.+|+++.|++++|||...                               +..+..+....+.|
T Consensus        10 s~h~DlihdVs~D~~GRRmAtCSsDq~vkI~d~~~-------------------------------~s~~W~~Ts~Wrah   58 (361)
T KOG2445|consen   10 SGHKDLIHDVSFDFYGRRMATCSSDQTVKIWDSTS-------------------------------DSGTWSCTSSWRAH   58 (361)
T ss_pred             cCCcceeeeeeecccCceeeeccCCCcEEEEeccC-------------------------------CCCceEEeeeEEec
Confidence            47889999999999999999999999999998643                               12345566678899


Q ss_pred             CcceEEEEEeC--CCCEEEeecCCCeEEEEECCCC---------eeeeeeecCCCCeeeEEEcc--CCCEEEEEeCCCeE
Q 042146          100 TNYVFCINFNP--QSNRIVSDTFNETIRIWDIKTG---------KCLKVLPAHSDPVTAIDFNR--DGTMIVTSSYDGLY  166 (262)
Q Consensus       100 ~~~v~~~~~~~--~~~~l~~~~~dg~i~vwd~~~~---------~~~~~~~~~~~~v~~~~~~~--~~~~l~~~~~dg~i  166 (262)
                      .+.|..+.|.+  -|+.+|+++.|+++.||.-...         ....++....+.|+++.|.|  -|-.|++++.||.+
T Consensus        59 ~~Si~rV~WAhPEfGqvvA~cS~Drtv~iWEE~~~~~~~~~~~Wv~~ttl~DsrssV~DV~FaP~hlGLklA~~~aDG~l  138 (361)
T KOG2445|consen   59 DGSIWRVVWAHPEFGQVVATCSYDRTVSIWEEQEKSEEAHGRRWVRRTTLVDSRSSVTDVKFAPKHLGLKLAAASADGIL  138 (361)
T ss_pred             CCcEEEEEecCccccceEEEEecCCceeeeeecccccccccceeEEEEEeecCCcceeEEEecchhcceEEEEeccCcEE
Confidence            99999999976  7899999999999999975211         23445566788999999999  57789999999999


Q ss_pred             EEEeCCC------------------------------------CCccEEEEEcCC-----CeEEEEecCCC----ceeeE
Q 042146          167 RILDAST------------------------------------PNGKFILVGTLD-----NTLRLWNYSTR----KILKT  201 (262)
Q Consensus       167 ~~~d~~~------------------------------------~~~~~l~~~~~d-----g~i~i~d~~~~----~~~~~  201 (262)
                      ++|+...                                    ...++|++|+.+     +.++||....+    ..+.+
T Consensus       139 RIYEA~dp~nLs~W~Lq~Ei~~~~~pp~~~~~~~~CvsWn~sr~~~p~iAvgs~e~a~~~~~~~Iye~~e~~rKw~kva~  218 (361)
T KOG2445|consen  139 RIYEAPDPMNLSQWTLQHEIQNVIDPPGKNKQPCFCVSWNPSRMHEPLIAVGSDEDAPHLNKVKIYEYNENGRKWLKVAE  218 (361)
T ss_pred             EEEecCCccccccchhhhhhhhccCCcccccCcceEEeeccccccCceEEEEcccCCccccceEEEEecCCcceeeeehh
Confidence            9999765                                    245788888866     47888865432    35566


Q ss_pred             EeccCCceeEEEEEEecCCCeeEEc-------------------------------------------cccceEEEEEcC
Q 042146          202 YSGYTNSKYCISSTFSVTNGKYIVS-------------------------------------------HRDPVISVASHP  238 (262)
Q Consensus       202 ~~~~~~~~~~~~~~~~~~~~~~~~~-------------------------------------------~~~~v~~~~~~p  238 (262)
                      +.++..++..++.++.....+.+.+                                           |.+.|..+.|+-
T Consensus       219 L~d~~dpI~di~wAPn~Gr~y~~lAvA~kDgv~I~~v~~~~s~i~~ee~~~~~~~~~l~v~~vs~~~~H~~~VWrv~wNm  298 (361)
T KOG2445|consen  219 LPDHTDPIRDISWAPNIGRSYHLLAVATKDGVRIFKVKVARSAIEEEEVLAPDLMTDLPVEKVSELDDHNGEVWRVRWNM  298 (361)
T ss_pred             cCCCCCcceeeeeccccCCceeeEEEeecCcEEEEEEeeccchhhhhcccCCCCccccceEEeeeccCCCCceEEEEEee
Confidence            7777777776665544333222211                                           888999999999


Q ss_pred             CCCeEEEeeecCCCcEEEEeec
Q 042146          239 AKNIIASGALDNDRTMKIWTQE  260 (262)
Q Consensus       239 ~~~~l~~~~~d~d~~i~iw~~~  260 (262)
                      .|..|++.|  .||.||+|+.+
T Consensus       299 tGtiLsStG--dDG~VRLWkan  318 (361)
T KOG2445|consen  299 TGTILSSTG--DDGCVRLWKAN  318 (361)
T ss_pred             eeeEEeecC--CCceeeehhhh
Confidence            999999988  88999999753

>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]

Probab=99.93  E-value=1e-24  Score=154.51  Aligned_cols=170  Identities=19%  Similarity=0.288  Sum_probs=135.4

Q ss_pred             CCceeee--cccccceecccCcCceEEEEEccCCCeEEEecCCCeEEEeecCCCCCCCCCC-CCCCccccCCc-------
Q 042146            4 DRSLESF--RPYTLTQTLNGHLRAVSYVKFSHDGRLLTSSSAEKTLLTYSLSSISNFDSTP-PSPLQKFTGHE-------   73 (262)
Q Consensus         4 d~~i~~~--~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~-~~~~~~~~~~~-------   73 (262)
                      |.+...|  .+..-+-++++|++.|+|++..-+.+++++|+.|.++++||+++++.....+ +.++.......       
T Consensus        31 D~~~~vw~s~nGerlGty~GHtGavW~~Did~~s~~liTGSAD~t~kLWDv~tGk~la~~k~~~~Vk~~~F~~~gn~~l~  110 (327)
T KOG0643|consen   31 DSTPTVWYSLNGERLGTYDGHTGAVWCCDIDWDSKHLITGSADQTAKLWDVETGKQLATWKTNSPVKRVDFSFGGNLILA  110 (327)
T ss_pred             CCCceEEEecCCceeeeecCCCceEEEEEecCCcceeeeccccceeEEEEcCCCcEEEEeecCCeeEEEeeccCCcEEEE
Confidence            4444444  3677889999999999999999999999999999999999999876543322 22222221111       


Q ss_pred             ---cccccceeEEEEecC-------CCccceecccCCcceEEEEEeCCCCEEEeecCCCeEEEEECCCCe-eeeeeecCC
Q 042146           74 ---QGISDLATIRLWDVP-------TATSLKTLIGHTNYVFCINFNPQSNRIVSDTFNETIRIWDIKTGK-CLKVLPAHS  142 (262)
Q Consensus        74 ---~~v~~~~~i~v~d~~-------~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~-~~~~~~~~~  142 (262)
                         .....-+.|.++|++       ..++...+..+...++.+-|.|-++.|++|.+||.|..||+++++ .+...+.|.
T Consensus       111 ~tD~~mg~~~~v~~fdi~~~~~~~~s~ep~~kI~t~~skit~a~Wg~l~~~ii~Ghe~G~is~~da~~g~~~v~s~~~h~  190 (327)
T KOG0643|consen  111 STDKQMGYTCFVSVFDIRDDSSDIDSEEPYLKIPTPDSKITSALWGPLGETIIAGHEDGSISIYDARTGKELVDSDEEHS  190 (327)
T ss_pred             EehhhcCcceEEEEEEccCChhhhcccCceEEecCCccceeeeeecccCCEEEEecCCCcEEEEEcccCceeeechhhhc
Confidence               111222278899887       345567777788999999999999999999999999999999974 455567899


Q ss_pred             CCeeeEEEccCCCEEEEEeCCCeEEEEeCCC
Q 042146          143 DPVTAIDFNRDGTMIVTSSYDGLYRILDAST  173 (262)
Q Consensus       143 ~~v~~~~~~~~~~~l~~~~~dg~i~~~d~~~  173 (262)
                      ..|+.|.++|+..++++++.|.+-++||.++
T Consensus       191 ~~Ind~q~s~d~T~FiT~s~Dttakl~D~~t  221 (327)
T KOG0643|consen  191 SKINDLQFSRDRTYFITGSKDTTAKLVDVRT  221 (327)
T ss_pred             cccccccccCCcceEEecccCccceeeeccc
Confidence            9999999999999999999999999999887

>KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning]

Probab=99.93  E-value=8.6e-27  Score=184.90  Aligned_cols=185  Identities=25%  Similarity=0.544  Sum_probs=169.1

Q ss_pred             eecccCcCceEEEEEccCCCeEEEecCCCeEEEeecCCCCCCCCCCCCCCccccCCccccccceeEEEEecCCCccceec
Q 042146           17 QTLNGHLRAVSYVKFSHDGRLLTSSSAEKTLLTYSLSSISNFDSTPPSPLQKFTGHEQGISDLATIRLWDVPTATSLKTL   96 (262)
Q Consensus        17 ~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~i~v~d~~~~~~~~~~   96 (262)
                      +.+-.|...|.|+..-..++.+++|+.|..+-+|.+.                                   ....+..+
T Consensus        22 ~~~~~hsaav~~lk~~~s~r~~~~Gg~~~k~~L~~i~-----------------------------------kp~~i~S~   66 (825)
T KOG0267|consen   22 REFVAHSAAVGCLKIRKSSRSLVTGGEDEKVNLWAIG-----------------------------------KPNAITSL   66 (825)
T ss_pred             hhhhhhhhhhceeeeeccceeeccCCCceeecccccc-----------------------------------CCchhhee
Confidence            4556789999999987788999999999888888442                                   23334458


Q ss_pred             ccCCcceEEEEEeCCCCEEEeecCCCeEEEEECCCCeeeeeeecCCCCeeeEEEccCCCEEEEEeCCCeEEEEeCCC---
Q 042146           97 IGHTNYVFCINFNPQSNRIVSDTFNETIRIWDIKTGKCLKVLPAHSDPVTAIDFNRDGTMIVTSSYDGLYRILDAST---  173 (262)
Q Consensus        97 ~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~d~~~---  173 (262)
                      .+|..+|.++.|+++..+|++|+.+|+|++||++.++.++++.+|...+.++.|+|-+.+++.++.|+.+++||.+.   
T Consensus        67 ~~hespIeSl~f~~~E~LlaagsasgtiK~wDleeAk~vrtLtgh~~~~~sv~f~P~~~~~a~gStdtd~~iwD~Rk~Gc  146 (825)
T KOG0267|consen   67 TGHESPIESLTFDTSERLLAAGSASGTIKVWDLEEAKIVRTLTGHLLNITSVDFHPYGEFFASGSTDTDLKIWDIRKKGC  146 (825)
T ss_pred             eccCCcceeeecCcchhhhcccccCCceeeeehhhhhhhhhhhccccCcceeeeccceEEeccccccccceehhhhccCc
Confidence            89999999999999999999999999999999999999999999999999999999999999999999999999984   


Q ss_pred             -----------------CCccEEEEEcCCCeEEEEecCCCceeeEEeccCCceeEEEEEEecCCCeeEEccccceEEEEE
Q 042146          174 -----------------PNGKFILVGTLDNTLRLWNYSTRKILKTYSGYTNSKYCISSTFSVTNGKYIVSHRDPVISVAS  236 (262)
Q Consensus       174 -----------------~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~  236 (262)
                                       |+|++++.|++|..++|||+..|+....|+.                      |.+.+..+.|
T Consensus       147 ~~~~~s~~~vv~~l~lsP~Gr~v~~g~ed~tvki~d~~agk~~~ef~~----------------------~e~~v~sle~  204 (825)
T KOG0267|consen  147 SHTYKSHTRVVDVLRLSPDGRWVASGGEDNTVKIWDLTAGKLSKEFKS----------------------HEGKVQSLEF  204 (825)
T ss_pred             eeeecCCcceeEEEeecCCCceeeccCCcceeeeeccccccccccccc----------------------cccccccccc
Confidence                             8999999999999999999999999999998                      8889999999


Q ss_pred             cCCCCeEEEeeecCCCcEEEEeec
Q 042146          237 HPAKNIIASGALDNDRTMKIWTQE  260 (262)
Q Consensus       237 ~p~~~~l~~~~~d~d~~i~iw~~~  260 (262)
                      +|..-++++||  .|+++++||++
T Consensus       205 hp~e~Lla~Gs--~d~tv~f~dle  226 (825)
T KOG0267|consen  205 HPLEVLLAPGS--SDRTVRFWDLE  226 (825)
T ss_pred             CchhhhhccCC--CCceeeeeccc
Confidence            99999999999  89999999987

>KOG2055 consensus WD40 repeat protein [General function prediction only]

Probab=99.93  E-value=4.1e-24  Score=161.82  Aligned_cols=233  Identities=18%  Similarity=0.222  Sum_probs=169.9

Q ss_pred             cCceEEEEEccCCCeEEEecCCCeEEEeecCCCCCCCC----CCCCCCccccCCccc---ccc---ceeEEEEecCCCcc
Q 042146           23 LRAVSYVKFSHDGRLLTSSSAEKTLLTYSLSSISNFDS----TPPSPLQKFTGHEQG---ISD---LATIRLWDVPTATS   92 (262)
Q Consensus        23 ~~~v~~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~----~~~~~~~~~~~~~~~---v~~---~~~i~v~d~~~~~~   92 (262)
                      .++|+++.|+|....|++++.||+++||.++.......    ....++.+...+..+   +..   -..++.||+++.+.
T Consensus       213 ~~~I~sv~FHp~~plllvaG~d~~lrifqvDGk~N~~lqS~~l~~fPi~~a~f~p~G~~~i~~s~rrky~ysyDle~ak~  292 (514)
T KOG2055|consen  213 HGGITSVQFHPTAPLLLVAGLDGTLRIFQVDGKVNPKLQSIHLEKFPIQKAEFAPNGHSVIFTSGRRKYLYSYDLETAKV  292 (514)
T ss_pred             cCCceEEEecCCCceEEEecCCCcEEEEEecCccChhheeeeeccCccceeeecCCCceEEEecccceEEEEeecccccc
Confidence            47899999999999999999999999999876433211    111122221111111   111   11789999988764


Q ss_pred             c--eecccCC-cceEEEEEeCCCCEEEeecCCCeEEEEECCCCeeeeeeecCCCCeeeEEEccCCCEEEEEeCCCeEEEE
Q 042146           93 L--KTLIGHT-NYVFCINFNPQSNRIVSDTFNETIRIWDIKTGKCLKVLPAHSDPVTAIDFNRDGTMIVTSSYDGLYRIL  169 (262)
Q Consensus        93 ~--~~~~~~~-~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~  169 (262)
                      .  ....++. ..+....++|++++|+..+..|.|.+....+++.+..++ -.+.|..++|+.+++.|++++.+|.|.+|
T Consensus       293 ~k~~~~~g~e~~~~e~FeVShd~~fia~~G~~G~I~lLhakT~eli~s~K-ieG~v~~~~fsSdsk~l~~~~~~GeV~v~  371 (514)
T KOG2055|consen  293 TKLKPPYGVEEKSMERFEVSHDSNFIAIAGNNGHIHLLHAKTKELITSFK-IEGVVSDFTFSSDSKELLASGGTGEVYVW  371 (514)
T ss_pred             ccccCCCCcccchhheeEecCCCCeEEEcccCceEEeehhhhhhhhheee-eccEEeeEEEecCCcEEEEEcCCceEEEE
Confidence            3  3344443 457788899999999999999999999999999998886 58899999999999999999999999999


Q ss_pred             eCCC---------------------CCccEEEEEcCCCeEEEEecCC------CceeeEEeccCCceeEEEEEEecCCC-
Q 042146          170 DAST---------------------PNGKFILVGTLDNTLRLWNYST------RKILKTYSGYTNSKYCISSTFSVTNG-  221 (262)
Q Consensus       170 d~~~---------------------~~~~~l~~~~~dg~i~i~d~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~-  221 (262)
                      |++.                     .++.||++|+..|.|.|||..+      .+++..+......+..+.  |+.... 
T Consensus       372 nl~~~~~~~rf~D~G~v~gts~~~S~ng~ylA~GS~~GiVNIYd~~s~~~s~~PkPik~~dNLtt~Itsl~--Fn~d~qi  449 (514)
T KOG2055|consen  372 NLRQNSCLHRFVDDGSVHGTSLCISLNGSYLATGSDSGIVNIYDGNSCFASTNPKPIKTVDNLTTAITSLQ--FNHDAQI  449 (514)
T ss_pred             ecCCcceEEEEeecCccceeeeeecCCCceEEeccCcceEEEeccchhhccCCCCchhhhhhhheeeeeee--eCcchhh
Confidence            9987                     6889999999999999999653      234444332222222221  111110 


Q ss_pred             --------------------eeEE------ccccceEEEEEcCCCCeEEEeeecCCCcEEEEeec
Q 042146          222 --------------------KYIV------SHRDPVISVASHPAKNIIASGALDNDRTMKIWTQE  260 (262)
Q Consensus       222 --------------------~~~~------~~~~~v~~~~~~p~~~~l~~~~~d~d~~i~iw~~~  260 (262)
                                          .++.      ..-+.|+||+|+|.+.+||.|.  ++|.+.+|++.
T Consensus       450 LAiaS~~~knalrLVHvPS~TVFsNfP~~n~~vg~vtc~aFSP~sG~lAvGN--e~grv~l~kL~  512 (514)
T KOG2055|consen  450 LAIASRVKKNALRLVHVPSCTVFSNFPTSNTKVGHVTCMAFSPNSGYLAVGN--EAGRVHLFKLH  512 (514)
T ss_pred             hhhhhhccccceEEEeccceeeeccCCCCCCcccceEEEEecCCCceEEeec--CCCceeeEeec
Confidence                                0000      0345799999999999999999  99999999985

>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]

Probab=99.93  E-value=8.8e-26  Score=166.10  Aligned_cols=211  Identities=18%  Similarity=0.353  Sum_probs=167.9

Q ss_pred             cceecccCcCceEEEEEccCC-CeEEEecCCCeEEEeecCCCCCCCCCCCCCCccccCCcccccc-------------ce
Q 042146           15 LTQTLNGHLRAVSYVKFSHDG-RLLTSSSAEKTLLTYSLSSISNFDSTPPSPLQKFTGHEQGISD-------------LA   80 (262)
Q Consensus        15 ~~~~~~~h~~~v~~~~~~~~~-~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~-------------~~   80 (262)
                      ++..+.+|...|.|++=+|.. ..+++|+.||.|+|||+.....        ...+..|.+.|..             ..
T Consensus        58 Fv~~L~gHrdGV~~lakhp~~ls~~aSGs~DG~VkiWnlsqR~~--------~~~f~AH~G~V~Gi~v~~~~~~tvgdDK  129 (433)
T KOG0268|consen   58 FVGSLDGHRDGVSCLAKHPNKLSTVASGSCDGEVKIWNLSQREC--------IRTFKAHEGLVRGICVTQTSFFTVGDDK  129 (433)
T ss_pred             chhhccccccccchhhcCcchhhhhhccccCceEEEEehhhhhh--------hheeecccCceeeEEecccceEEecCCc
Confidence            456778999999999999987 7899999999999998876433        2333334333332             22


Q ss_pred             eEEEEecCCCccceecccCCcceEEEEEeCCCCEEEeecCCCeEEEEECCCCeeeeeeecCCCCeeeEEEcc-CCCEEEE
Q 042146           81 TIRLWDVPTATSLKTLIGHTNYVFCINFNPQSNRIVSDTFNETIRIWDIKTGKCLKVLPAHSDPVTAIDFNR-DGTMIVT  159 (262)
Q Consensus        81 ~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~  159 (262)
                      +|+.|.++. .+++++.+ ...+..+.-+..+..+++++.  .|.|||.+...++..+.-....|.++.|+| ....|++
T Consensus       130 tvK~wk~~~-~p~~tilg-~s~~~gIdh~~~~~~FaTcGe--~i~IWD~~R~~Pv~smswG~Dti~svkfNpvETsILas  205 (433)
T KOG0268|consen  130 TVKQWKIDG-PPLHTILG-KSVYLGIDHHRKNSVFATCGE--QIDIWDEQRDNPVSSMSWGADSISSVKFNPVETSILAS  205 (433)
T ss_pred             ceeeeeccC-Ccceeeec-cccccccccccccccccccCc--eeeecccccCCccceeecCCCceeEEecCCCcchheee
Confidence            788888764 35555443 445666766666777888775  589999998889999987788899999999 4567888


Q ss_pred             EeCCCeEEEEeCCC-------------------CCccEEEEEcCCCeEEEEecCCC-ceeeEEeccCCceeEEEEEEecC
Q 042146          160 SSYDGLYRILDAST-------------------PNGKFILVGTLDNTLRLWNYSTR-KILKTYSGYTNSKYCISSTFSVT  219 (262)
Q Consensus       160 ~~~dg~i~~~d~~~-------------------~~~~~l~~~~~dg~i~i~d~~~~-~~~~~~~~~~~~~~~~~~~~~~~  219 (262)
                      |+.|+.|.+||++.                   |.+-.+++|++|..++.||++.. +++....+               
T Consensus       206 ~~sDrsIvLyD~R~~~Pl~KVi~~mRTN~IswnPeafnF~~a~ED~nlY~~DmR~l~~p~~v~~d---------------  270 (433)
T KOG0268|consen  206 CASDRSIVLYDLRQASPLKKVILTMRTNTICWNPEAFNFVAANEDHNLYTYDMRNLSRPLNVHKD---------------  270 (433)
T ss_pred             eccCCceEEEecccCCccceeeeeccccceecCccccceeeccccccceehhhhhhcccchhhcc---------------
Confidence            88999999999997                   77778999999999999999864 34555555               


Q ss_pred             CCeeEEccccceEEEEEcCCCCeEEEeeecCCCcEEEEeecc
Q 042146          220 NGKYIVSHRDPVISVASHPAKNIIASGALDNDRTMKIWTQEK  261 (262)
Q Consensus       220 ~~~~~~~~~~~v~~~~~~p~~~~l~~~~~d~d~~i~iw~~~~  261 (262)
                             |...|.++.|||.|+-+++||  .|.+|+||..+.
T Consensus       271 -------hvsAV~dVdfsptG~Efvsgs--yDksIRIf~~~~  303 (433)
T KOG0268|consen  271 -------HVSAVMDVDFSPTGQEFVSGS--YDKSIRIFPVNH  303 (433)
T ss_pred             -------cceeEEEeccCCCcchhcccc--ccceEEEeecCC
Confidence                   888999999999999999999  899999998864

>KOG0302 consensus Ribosome Assembly protein [General function prediction only]

Probab=99.93  E-value=1.7e-24  Score=160.16  Aligned_cols=199  Identities=24%  Similarity=0.432  Sum_probs=153.6

Q ss_pred             cccCcCceEEEEEccCC--CeEEEecCCCeEEEeecCCCCCCCCCCCCCCccccCCccccccceeEEEEecCCCccceec
Q 042146           19 LNGHLRAVSYVKFSHDG--RLLTSSSAEKTLLTYSLSSISNFDSTPPSPLQKFTGHEQGISDLATIRLWDVPTATSLKTL   96 (262)
Q Consensus        19 ~~~h~~~v~~~~~~~~~--~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~i~v~d~~~~~~~~~~   96 (262)
                      .-.|.+.++-+.-++-+  .+.++-+..|.|.||++......-....                  +.+-+ ...+++.++
T Consensus       147 ~i~h~g~~NRvr~~~~~~~~~~aswse~G~V~Vw~l~~~l~~l~~~~------------------~~~~~-s~~~Pl~t~  207 (440)
T KOG0302|consen  147 SIPHYGGINRVRVSRLGNEVLCASWSENGRVQVWDLAPHLNALSEPG------------------LEVKD-SEFRPLFTF  207 (440)
T ss_pred             ccccccccceeeecccCCcceeeeecccCcEEEEEchhhhhhhcCcc------------------ccccc-cccCceEEe
Confidence            34678888888877754  4677778899999999864211100000                  01111 345788889


Q ss_pred             ccCCcceEEEEEeC-CCCEEEeecCCCeEEEEECCCCee---eeeeecCCCCeeeEEEccC-CCEEEEEeCCCeEEEEeC
Q 042146           97 IGHTNYVFCINFNP-QSNRIVSDTFNETIRIWDIKTGKC---LKVLPAHSDPVTAIDFNRD-GTMIVTSSYDGLYRILDA  171 (262)
Q Consensus        97 ~~~~~~v~~~~~~~-~~~~l~~~~~dg~i~vwd~~~~~~---~~~~~~~~~~v~~~~~~~~-~~~l~~~~~dg~i~~~d~  171 (262)
                      .+|+..=..|+|+| ....|++|.--+.|++|...++.-   ...+.+|+..|-.++|||. ...|++|+.||.|+|||+
T Consensus       208 ~ghk~EGy~LdWSp~~~g~LlsGDc~~~I~lw~~~~g~W~vd~~Pf~gH~~SVEDLqWSptE~~vfaScS~DgsIrIWDi  287 (440)
T KOG0302|consen  208 NGHKGEGYGLDWSPIKTGRLLSGDCVKGIHLWEPSTGSWKVDQRPFTGHTKSVEDLQWSPTEDGVFASCSCDGSIRIWDI  287 (440)
T ss_pred             cccCccceeeecccccccccccCccccceEeeeeccCceeecCccccccccchhhhccCCccCceEEeeecCceEEEEEe
Confidence            99999999999999 334578888888999999887642   2335679999999999994 468999999999999999


Q ss_pred             CC----------------------CCccEEEEEcCCCeEEEEecCC---CceeeEEeccCCceeEEEEEEecCCCeeEEc
Q 042146          172 ST----------------------PNGKFILVGTLDNTLRLWNYST---RKILKTYSGYTNSKYCISSTFSVTNGKYIVS  226 (262)
Q Consensus       172 ~~----------------------~~~~~l~~~~~dg~i~i~d~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  226 (262)
                      |.                      ....+|++|+.||+++|||++.   ++++..|+.                      
T Consensus       288 Rs~~~~~~~~~kAh~sDVNVISWnr~~~lLasG~DdGt~~iwDLR~~~~~~pVA~fk~----------------------  345 (440)
T KOG0302|consen  288 RSGPKKAAVSTKAHNSDVNVISWNRREPLLASGGDDGTLSIWDLRQFKSGQPVATFKY----------------------  345 (440)
T ss_pred             cCCCccceeEeeccCCceeeEEccCCcceeeecCCCceEEEEEhhhccCCCcceeEEe----------------------
Confidence            98                      2345899999999999999986   567777776                      


Q ss_pred             cccceEEEEEcCCC-CeEEEeeecCCCcEEEEeec
Q 042146          227 HRDPVISVASHPAK-NIIASGALDNDRTMKIWTQE  260 (262)
Q Consensus       227 ~~~~v~~~~~~p~~-~~l~~~~~d~d~~i~iw~~~  260 (262)
                      |..+|+++.|+|.. ..|+++|  .|.+|.|||+.
T Consensus       346 Hk~pItsieW~p~e~s~iaasg--~D~QitiWDls  378 (440)
T KOG0302|consen  346 HKAPITSIEWHPHEDSVIAASG--EDNQITIWDLS  378 (440)
T ss_pred             ccCCeeEEEeccccCceEEecc--CCCcEEEEEee
Confidence            99999999999964 4566666  79999999985

>KOG0269 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.93  E-value=3.6e-25  Score=176.91  Aligned_cols=196  Identities=21%  Similarity=0.373  Sum_probs=157.0

Q ss_pred             CCCCceeeecc-----cccceecccCcCceEEEEEccC-CCeEEEecCCCeEEEeecCCCCCCCCCCCCCCccccCCccc
Q 042146            2 SSDRSLESFRP-----YTLTQTLNGHLRAVSYVKFSHD-GRLLTSSSAEKTLLTYSLSSISNFDSTPPSPLQKFTGHEQG   75 (262)
Q Consensus         2 s~d~~i~~~~~-----~~~~~~~~~h~~~v~~~~~~~~-~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~   75 (262)
                      +..|.|..|+-     .+++..|..|+..++++.|++. ..+|++||.||+|++||+.                      
T Consensus       107 s~nG~i~vWdlnk~~rnk~l~~f~EH~Rs~~~ldfh~tep~iliSGSQDg~vK~~DlR----------------------  164 (839)
T KOG0269|consen  107 STNGVISVWDLNKSIRNKLLTVFNEHERSANKLDFHSTEPNILISGSQDGTVKCWDLR----------------------  164 (839)
T ss_pred             cCCCcEEEEecCccccchhhhHhhhhccceeeeeeccCCccEEEecCCCceEEEEeee----------------------
Confidence            34677777752     3466788999999999999985 5689999999999888653                      


Q ss_pred             cccceeEEEEecCCCccceecccCCcceEEEEEeC-CCCEEEeecCCCeEEEEECCCC-eeeeeeecCCCCeeeEEEccC
Q 042146           76 ISDLATIRLWDVPTATSLKTLIGHTNYVFCINFNP-QSNRIVSDTFNETIRIWDIKTG-KCLKVLPAHSDPVTAIDFNRD  153 (262)
Q Consensus        76 v~~~~~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~dg~i~vwd~~~~-~~~~~~~~~~~~v~~~~~~~~  153 (262)
                                   ..+...++.+....|..++|+| .+..++++.+.|.+.+||+|.. ++...+.+|.++|.++.|+|+
T Consensus       165 -------------~~~S~~t~~~nSESiRDV~fsp~~~~~F~s~~dsG~lqlWDlRqp~r~~~k~~AH~GpV~c~nwhPn  231 (839)
T KOG0269|consen  165 -------------SKKSKSTFRSNSESIRDVKFSPGYGNKFASIHDSGYLQLWDLRQPDRCEKKLTAHNGPVLCLNWHPN  231 (839)
T ss_pred             -------------cccccccccccchhhhceeeccCCCceEEEecCCceEEEeeccCchhHHHHhhcccCceEEEeecCC
Confidence                         4455556667788999999999 7888999999999999999854 567788899999999999999


Q ss_pred             CCEEEEEeCCCeEEEEeCCC---------------------CCc-cEEEEEc--CCCeEEEEecCCCc-eeeEEeccCCc
Q 042146          154 GTMIVTSSYDGLYRILDAST---------------------PNG-KFILVGT--LDNTLRLWNYSTRK-ILKTYSGYTNS  208 (262)
Q Consensus       154 ~~~l~~~~~dg~i~~~d~~~---------------------~~~-~~l~~~~--~dg~i~i~d~~~~~-~~~~~~~~~~~  208 (262)
                      +.+||+|+.|++|++||+..                     |.. ..|++++  .|-.|+|||++..- +-.++..    
T Consensus       232 r~~lATGGRDK~vkiWd~t~~~~~~~~tInTiapv~rVkWRP~~~~hLAtcsmv~dtsV~VWDvrRPYIP~~t~~e----  307 (839)
T KOG0269|consen  232 REWLATGGRDKMVKIWDMTDSRAKPKHTINTIAPVGRVKWRPARSYHLATCSMVVDTSVHVWDVRRPYIPYATFLE----  307 (839)
T ss_pred             CceeeecCCCccEEEEeccCCCccceeEEeecceeeeeeeccCccchhhhhhccccceEEEEeeccccccceeeec----
Confidence            99999999999999999885                     444 3455554  56789999998543 3344444    


Q ss_pred             eeEEEEEEecCCCeeEEccccceEEEEEcC-CCCeEEEeeecCCCcEEE
Q 042146          209 KYCISSTFSVTNGKYIVSHRDPVISVASHP-AKNIIASGALDNDRTMKI  256 (262)
Q Consensus       209 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p-~~~~l~~~~~d~d~~i~i  256 (262)
                                        |...++.++|.. +...|.+++  .||+|..
T Consensus       308 ------------------H~~~vt~i~W~~~d~~~l~s~s--KD~tv~q  336 (839)
T KOG0269|consen  308 ------------------HTDSVTGIAWDSGDRINLWSCS--KDGTVLQ  336 (839)
T ss_pred             ------------------cCccccceeccCCCceeeEeec--CccHHHH
Confidence                              888899999965 456778888  8887643

>KOG0300 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.93  E-value=9.8e-25  Score=158.52  Aligned_cols=190  Identities=27%  Similarity=0.486  Sum_probs=163.3

Q ss_pred             ccccceecccCcCceEEEEEccCCCeEEEecCCCeEEEeecCCCCCCCCCCCCCCccccCCccccccceeEEEEecCCCc
Q 042146           12 PYTLTQTLNGHLRAVSYVKFSHDGRLLTSSSAEKTLLTYSLSSISNFDSTPPSPLQKFTGHEQGISDLATIRLWDVPTAT   91 (262)
Q Consensus        12 ~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~i~v~d~~~~~   91 (262)
                      .+++++.+.||...|+.++.....+.+.+++.|.+.+||                                   .++++.
T Consensus       137 ~~~lvre~~GHkDGiW~Vaa~~tqpi~gtASADhTA~iW-----------------------------------s~Esg~  181 (481)
T KOG0300|consen  137 KFRLVRELEGHKDGIWHVAADSTQPICGTASADHTARIW-----------------------------------SLESGA  181 (481)
T ss_pred             eEeehhhhcccccceeeehhhcCCcceeecccccceeEE-----------------------------------eecccc
Confidence            355788889999999999998888899999999998887                                   456789


Q ss_pred             cceecccCCcceEEEEEeCCCCEEEeecCCCeEEEEEC------CC----------------------------------
Q 042146           92 SLKTLIGHTNYVFCINFNPQSNRIVSDTFNETIRIWDI------KT----------------------------------  131 (262)
Q Consensus        92 ~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~------~~----------------------------------  131 (262)
                      ++.++.+|.+.|++++|++.+.++++++.|++-.||..      ..                                  
T Consensus       182 CL~~Y~GH~GSVNsikfh~s~~L~lTaSGD~taHIW~~av~~~vP~~~a~~~hSsEeE~e~sDe~~~d~d~~~~sD~~ti  261 (481)
T KOG0300|consen  182 CLATYTGHTGSVNSIKFHNSGLLLLTASGDETAHIWKAAVNWEVPSNNAPSDHSSEEEEEHSDEHNRDTDSSEKSDGHTI  261 (481)
T ss_pred             ceeeecccccceeeEEeccccceEEEccCCcchHHHHHhhcCcCCCCCCCCCCCchhhhhcccccccccccccccCCcee
Confidence            99999999999999999999999999999999999951      10                                  


Q ss_pred             CeeeeeeecCCCCeeeEEEccCCCEEEEEeCCCeEEEEeCCC--------------------CCccEEEEEcCCCeEEEE
Q 042146          132 GKCLKVLPAHSDPVTAIDFNRDGTMIVTSSYDGLYRILDAST--------------------PNGKFILVGTLDNTLRLW  191 (262)
Q Consensus       132 ~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~d~~~--------------------~~~~~l~~~~~dg~i~i~  191 (262)
                      .-++..+.+|.+.|.+..|-..|+.+++++.|.+..+||+..                    |..+++++++.|.+.++|
T Consensus       262 RvPl~~ltgH~~vV~a~dWL~gg~Q~vTaSWDRTAnlwDVEtge~v~~LtGHd~ELtHcstHptQrLVvTsSrDtTFRLW  341 (481)
T KOG0300|consen  262 RVPLMRLTGHRAVVSACDWLAGGQQMVTASWDRTANLWDVETGEVVNILTGHDSELTHCSTHPTQRLVVTSSRDTTFRLW  341 (481)
T ss_pred             eeeeeeeeccccceEehhhhcCcceeeeeeccccceeeeeccCceeccccCcchhccccccCCcceEEEEeccCceeEec
Confidence            024556788999999999999999999999999999999887                    788999999999999999


Q ss_pred             ecCCC-ceeeEEeccCCceeEEEEEEecCCCeeEEccccceEEEEEcCCCCeEEEeeecCCCcEEEEeecc
Q 042146          192 NYSTR-KILKTYSGYTNSKYCISSTFSVTNGKYIVSHRDPVISVASHPAKNIIASGALDNDRTMKIWTQEK  261 (262)
Q Consensus       192 d~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~d~d~~i~iw~~~~  261 (262)
                      |++.. ..+..|++                      |.+.|+++.|..+.+ +++|+  +|.+|++||+.+
T Consensus       342 DFReaI~sV~VFQG----------------------HtdtVTS~vF~~dd~-vVSgS--DDrTvKvWdLrN  387 (481)
T KOG0300|consen  342 DFREAIQSVAVFQG----------------------HTDTVTSVVFNTDDR-VVSGS--DDRTVKVWDLRN  387 (481)
T ss_pred             cchhhcceeeeecc----------------------cccceeEEEEecCCc-eeecC--CCceEEEeeecc
Confidence            99842 34455555                      999999999987655 77888  899999999864

>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]

Probab=99.93  E-value=1.6e-24  Score=165.97  Aligned_cols=214  Identities=19%  Similarity=0.322  Sum_probs=167.2

Q ss_pred             cCcCceEEEEEccCCCeEEEecCCCeEEEeecCCCCCCCC------CCC-CCCccccCCccc--c---ccceeEEEEecC
Q 042146           21 GHLRAVSYVKFSHDGRLLTSSSAEKTLLTYSLSSISNFDS------TPP-SPLQKFTGHEQG--I---SDLATIRLWDVP   88 (262)
Q Consensus        21 ~h~~~v~~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~------~~~-~~~~~~~~~~~~--v---~~~~~i~v~d~~   88 (262)
                      .|.+-|.++.+|...+++.||+. |.|+|||+........      ... ..+....-...+  +   ....++.|||+.
T Consensus       417 ~HGEvVcAvtIS~~trhVyTgGk-gcVKVWdis~pg~k~PvsqLdcl~rdnyiRSckL~pdgrtLivGGeastlsiWDLA  495 (705)
T KOG0639|consen  417 AHGEVVCAVTISNPTRHVYTGGK-GCVKVWDISQPGNKSPVSQLDCLNRDNYIRSCKLLPDGRTLIVGGEASTLSIWDLA  495 (705)
T ss_pred             ccCcEEEEEEecCCcceeEecCC-CeEEEeeccCCCCCCccccccccCcccceeeeEecCCCceEEeccccceeeeeecc
Confidence            58888999999999999999985 8999999976422111      100 011111111111  0   112389999997


Q ss_pred             CCccce--ecccCCcceEEEEEeCCCCEEEeecCCCeEEEEECCCCeeeeeeecCCCCeeeEEEccCCCEEEEEeCCCeE
Q 042146           89 TATSLK--TLIGHTNYVFCINFNPQSNRIVSDTFNETIRIWDIKTGKCLKVLPAHSDPVTAIDFNRDGTMIVTSSYDGLY  166 (262)
Q Consensus        89 ~~~~~~--~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i  166 (262)
                      ...+-.  ++....-...+++.+||.++.+++..||.|.|||+++...++.+++|...+.||.++++|..|.+|+.|.+|
T Consensus       496 apTprikaeltssapaCyALa~spDakvcFsccsdGnI~vwDLhnq~~VrqfqGhtDGascIdis~dGtklWTGGlDntv  575 (705)
T KOG0639|consen  496 APTPRIKAELTSSAPACYALAISPDAKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDISKDGTKLWTGGLDNTV  575 (705)
T ss_pred             CCCcchhhhcCCcchhhhhhhcCCccceeeeeccCCcEEEEEcccceeeecccCCCCCceeEEecCCCceeecCCCccce
Confidence            665432  344344567789999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEEeCCC-------------------CCccEEEEEcCCCeEEEEecCCCceeeEEeccCCceeEEEEEEecCCCeeEEcc
Q 042146          167 RILDAST-------------------PNGKFILVGTLDNTLRLWNYSTRKILKTYSGYTNSKYCISSTFSVTNGKYIVSH  227 (262)
Q Consensus       167 ~~~d~~~-------------------~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  227 (262)
                      +.||++.                   |++.+|++|.+++.+.|...... ....+..                      |
T Consensus       576 RcWDlregrqlqqhdF~SQIfSLg~cP~~dWlavGMens~vevlh~skp-~kyqlhl----------------------h  632 (705)
T KOG0639|consen  576 RCWDLREGRQLQQHDFSSQIFSLGYCPTGDWLAVGMENSNVEVLHTSKP-EKYQLHL----------------------H  632 (705)
T ss_pred             eehhhhhhhhhhhhhhhhhheecccCCCccceeeecccCcEEEEecCCc-cceeecc----------------------c
Confidence            9999997                   89999999999999988776532 2233332                      8


Q ss_pred             ccceEEEEEcCCCCeEEEeeecCCCcEEEEeec
Q 042146          228 RDPVISVASHPAKNIIASGALDNDRTMKIWTQE  260 (262)
Q Consensus       228 ~~~v~~~~~~p~~~~l~~~~~d~d~~i~iw~~~  260 (262)
                      +.-|.++.|.+.|+++++.+  .|..+..|...
T Consensus       633 eScVLSlKFa~cGkwfvStG--kDnlLnawrtP  663 (705)
T KOG0639|consen  633 ESCVLSLKFAYCGKWFVSTG--KDNLLNAWRTP  663 (705)
T ss_pred             ccEEEEEEecccCceeeecC--chhhhhhccCc
Confidence            89999999999999999999  88999998763

>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]

Probab=99.93  E-value=2.8e-24  Score=158.22  Aligned_cols=148  Identities=29%  Similarity=0.554  Sum_probs=139.1

Q ss_pred             CccceecccCCcceEEEEEeCCCCEEEeecCCCeEEEEECCCCeeeeeeecCCCCeeeEEEccCCCEEEEEeCCCeEEEE
Q 042146           90 ATSLKTLIGHTNYVFCINFNPQSNRIVSDTFNETIRIWDIKTGKCLKVLPAHSDPVTAIDFNRDGTMIVTSSYDGLYRIL  169 (262)
Q Consensus        90 ~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~  169 (262)
                      ...+..+..|+..|.+++.+|+.+++++|+.|..-.+|++.++.....+.+|+..|+++.|+.+|.+|++|..+|.|++|
T Consensus        54 DdS~~tF~~H~~svFavsl~P~~~l~aTGGgDD~AflW~~~~ge~~~eltgHKDSVt~~~FshdgtlLATGdmsG~v~v~  133 (399)
T KOG0296|consen   54 DDSLVTFDKHTDSVFAVSLHPNNNLVATGGGDDLAFLWDISTGEFAGELTGHKDSVTCCSFSHDGTLLATGDMSGKVLVF  133 (399)
T ss_pred             ccceeehhhcCCceEEEEeCCCCceEEecCCCceEEEEEccCCcceeEecCCCCceEEEEEccCceEEEecCCCccEEEE
Confidence            34566788999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             eCCC--------------------CCccEEEEEcCCCeEEEEecCCCceeeEEeccCCceeEEEEEEecCCCeeEEcccc
Q 042146          170 DAST--------------------PNGKFILVGTLDNTLRLWNYSTRKILKTYSGYTNSKYCISSTFSVTNGKYIVSHRD  229 (262)
Q Consensus       170 d~~~--------------------~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  229 (262)
                      +..+                    |.+..|++|+.||.+..|.+.++...+.+.+                      |..
T Consensus       134 ~~stg~~~~~~~~e~~dieWl~WHp~a~illAG~~DGsvWmw~ip~~~~~kv~~G----------------------h~~  191 (399)
T KOG0296|consen  134 KVSTGGEQWKLDQEVEDIEWLKWHPRAHILLAGSTDGSVWMWQIPSQALCKVMSG----------------------HNS  191 (399)
T ss_pred             EcccCceEEEeecccCceEEEEecccccEEEeecCCCcEEEEECCCcceeeEecC----------------------CCC
Confidence            9877                    8899999999999999999999888888887                      889


Q ss_pred             ceEEEEEcCCCCeEEEeeecCCCcEEEEeecc
Q 042146          230 PVISVASHPAKNIIASGALDNDRTMKIWTQEK  261 (262)
Q Consensus       230 ~v~~~~~~p~~~~l~~~~~d~d~~i~iw~~~~  261 (262)
                      ++++-.|.|+|+.++++.  .||+|++|++..
T Consensus       192 ~ct~G~f~pdGKr~~tgy--~dgti~~Wn~kt  221 (399)
T KOG0296|consen  192 PCTCGEFIPDGKRILTGY--DDGTIIVWNPKT  221 (399)
T ss_pred             CcccccccCCCceEEEEe--cCceEEEEecCC
Confidence            999999999999999999  899999999864

>KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning]

Probab=99.93  E-value=1.3e-25  Score=178.24  Aligned_cols=176  Identities=26%  Similarity=0.484  Sum_probs=158.4

Q ss_pred             cceecccCcCceEEEEEccCCCeEEEecCCCeEEEeecCCCCCCCCCCCCCCccccCCccccccceeEEEEecCCCccce
Q 042146           15 LTQTLNGHLRAVSYVKFSHDGRLLTSSSAEKTLLTYSLSSISNFDSTPPSPLQKFTGHEQGISDLATIRLWDVPTATSLK   94 (262)
Q Consensus        15 ~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~i~v~d~~~~~~~~   94 (262)
                      .+..|.+|..+|.|+.|+++..+|++|+.+|+|++||+                                   +..+.++
T Consensus        62 ~i~S~~~hespIeSl~f~~~E~LlaagsasgtiK~wDl-----------------------------------eeAk~vr  106 (825)
T KOG0267|consen   62 AITSLTGHESPIESLTFDTSERLLAAGSASGTIKVWDL-----------------------------------EEAKIVR  106 (825)
T ss_pred             hhheeeccCCcceeeecCcchhhhcccccCCceeeeeh-----------------------------------hhhhhhh
Confidence            44468899999999999999999999999999888854                                   5677788


Q ss_pred             ecccCCcceEEEEEeCCCCEEEeecCCCeEEEEECCCCeeeeeeecCCCCeeeEEEccCCCEEEEEeCCCeEEEEeCCC-
Q 042146           95 TLIGHTNYVFCINFNPQSNRIVSDTFNETIRIWDIKTGKCLKVLPAHSDPVTAIDFNRDGTMIVTSSYDGLYRILDAST-  173 (262)
Q Consensus        95 ~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~d~~~-  173 (262)
                      ++.+|...+.++.|+|.+.+.++|+.|+.+++||.+..-+.+.+.+|...+..++|+|+|++++.++.|.++++||+.. 
T Consensus       107 tLtgh~~~~~sv~f~P~~~~~a~gStdtd~~iwD~Rk~Gc~~~~~s~~~vv~~l~lsP~Gr~v~~g~ed~tvki~d~~ag  186 (825)
T KOG0267|consen  107 TLTGHLLNITSVDFHPYGEFFASGSTDTDLKIWDIRKKGCSHTYKSHTRVVDVLRLSPDGRWVASGGEDNTVKIWDLTAG  186 (825)
T ss_pred             hhhccccCcceeeeccceEEeccccccccceehhhhccCceeeecCCcceeEEEeecCCCceeeccCCcceeeeeccccc
Confidence            9999999999999999999999999999999999998889999999999999999999999999999999999999854 


Q ss_pred             -------------------CCccEEEEEcCCCeEEEEecCCCceeeEEeccCCceeEEEEEEecCCCeeEEccccceEEE
Q 042146          174 -------------------PNGKFILVGTLDNTLRLWNYSTRKILKTYSGYTNSKYCISSTFSVTNGKYIVSHRDPVISV  234 (262)
Q Consensus       174 -------------------~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~  234 (262)
                                         |..-.++.|+.|+++++||+++.+.+.....                      ....|.+.
T Consensus       187 k~~~ef~~~e~~v~sle~hp~e~Lla~Gs~d~tv~f~dletfe~I~s~~~----------------------~~~~v~~~  244 (825)
T KOG0267|consen  187 KLSKEFKSHEGKVQSLEFHPLEVLLAPGSSDRTVRFWDLETFEVISSGKP----------------------ETDGVRSL  244 (825)
T ss_pred             ccccccccccccccccccCchhhhhccCCCCceeeeeccceeEEeeccCC----------------------ccCCceee
Confidence                               4556788999999999999998888776655                      45679999


Q ss_pred             EEcCCCCeEEEee
Q 042146          235 ASHPAKNIIASGA  247 (262)
Q Consensus       235 ~~~p~~~~l~~~~  247 (262)
                      +|+|++..+++|.
T Consensus       245 ~fn~~~~~~~~G~  257 (825)
T KOG0267|consen  245 AFNPDGKIVLSGE  257 (825)
T ss_pred             eecCCceeeecCc
Confidence            9999999998885

>KOG0270 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.93  E-value=1.8e-24  Score=162.89  Aligned_cols=199  Identities=17%  Similarity=0.369  Sum_probs=153.4

Q ss_pred             CceEEEEEcc-------CCCeEEEecCCCeEEEeecCCCCCCCCCCCCCCccccCCccccccceeEEEEecCCCccceec
Q 042146           24 RAVSYVKFSH-------DGRLLTSSSAEKTLLTYSLSSISNFDSTPPSPLQKFTGHEQGISDLATIRLWDVPTATSLKTL   96 (262)
Q Consensus        24 ~~v~~~~~~~-------~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~i~v~d~~~~~~~~~~   96 (262)
                      ..-.|++|..       .|+|+|.|+.|..|.|||++-....     .+...+.......         .-..++.-...
T Consensus       174 afPLC~ewld~~~~~~~~gNyvAiGtmdp~IeIWDLDI~d~v-----~P~~~LGs~~sk~---------~~k~~k~~~~~  239 (463)
T KOG0270|consen  174 AFPLCIEWLDHGSKSGGAGNYVAIGTMDPEIEIWDLDIVDAV-----LPCVTLGSKASKK---------KKKKGKRSNSA  239 (463)
T ss_pred             CcchhhhhhhcCCCCCCCcceEEEeccCceeEEecccccccc-----ccceeechhhhhh---------hhhhccccccc
Confidence            3346777743       3789999999999999998642111     1111111000000         00011111234


Q ss_pred             ccCCcceEEEEEeC-CCCEEEeecCCCeEEEEECCCCeeeeeeecCCCCeeeEEEcc-CCCEEEEEeCCCeEEEEeCCC-
Q 042146           97 IGHTNYVFCINFNP-QSNRIVSDTFNETIRIWDIKTGKCLKVLPAHSDPVTAIDFNR-DGTMIVTSSYDGLYRILDAST-  173 (262)
Q Consensus        97 ~~~~~~v~~~~~~~-~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~dg~i~~~d~~~-  173 (262)
                      .+|...|..++|+. -.+.|++|+.|.+|++||+.++++..++..|.++|.++.|+| .+..|++|+.|+++.+.|.|. 
T Consensus       240 ~gHTdavl~Ls~n~~~~nVLaSgsaD~TV~lWD~~~g~p~~s~~~~~k~Vq~l~wh~~~p~~LLsGs~D~~V~l~D~R~~  319 (463)
T KOG0270|consen  240 SGHTDAVLALSWNRNFRNVLASGSADKTVKLWDVDTGKPKSSITHHGKKVQTLEWHPYEPSVLLSGSYDGTVALKDCRDP  319 (463)
T ss_pred             ccchHHHHHHHhccccceeEEecCCCceEEEEEcCCCCcceehhhcCCceeEEEecCCCceEEEeccccceEEeeeccCc
Confidence            57888999999987 456799999999999999999999999999999999999999 667999999999999999994 


Q ss_pred             --------------------CCccEEEEEcCCCeEEEEecCCC-ceeeEEeccCCceeEEEEEEecCCCeeEEccccceE
Q 042146          174 --------------------PNGKFILVGTLDNTLRLWNYSTR-KILKTYSGYTNSKYCISSTFSVTNGKYIVSHRDPVI  232 (262)
Q Consensus       174 --------------------~~~~~l~~~~~dg~i~i~d~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~  232 (262)
                                          .....+++++.||.++-+|+|.. +++.+++.                      |.++|.
T Consensus       320 ~~s~~~wk~~g~VEkv~w~~~se~~f~~~tddG~v~~~D~R~~~~~vwt~~A----------------------Hd~~IS  377 (463)
T KOG0270|consen  320 SNSGKEWKFDGEVEKVAWDPHSENSFFVSTDDGTVYYFDIRNPGKPVWTLKA----------------------HDDEIS  377 (463)
T ss_pred             cccCceEEeccceEEEEecCCCceeEEEecCCceEEeeecCCCCCceeEEEe----------------------ccCCcc
Confidence                                45678889999999999999974 88888887                      999999


Q ss_pred             EEEEcCCC-CeEEEeeecCCCcEEEEeec
Q 042146          233 SVASHPAK-NIIASGALDNDRTMKIWTQE  260 (262)
Q Consensus       233 ~~~~~p~~-~~l~~~~~d~d~~i~iw~~~  260 (262)
                      ++++++.- .+++|++  .|+.|++|++.
T Consensus       378 gl~~n~~~p~~l~t~s--~d~~Vklw~~~  404 (463)
T KOG0270|consen  378 GLSVNIQTPGLLSTAS--TDKVVKLWKFD  404 (463)
T ss_pred             eEEecCCCCcceeecc--ccceEEEEeec
Confidence            99999865 4678888  89999999985

>KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning]

Probab=99.93  E-value=1.3e-24  Score=168.15  Aligned_cols=199  Identities=22%  Similarity=0.405  Sum_probs=170.2

Q ss_pred             ccccceecccCcCceEEEEEccCCCeEEEecCCCeEEEeecCCCCCCCCCCCCCCccccCCccccccceeEEEEecCCCc
Q 042146           12 PYTLTQTLNGHLRAVSYVKFSHDGRLLTSSSAEKTLLTYSLSSISNFDSTPPSPLQKFTGHEQGISDLATIRLWDVPTAT   91 (262)
Q Consensus        12 ~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~i~v~d~~~~~   91 (262)
                      .+.+..++..|...|+.++|+|....|++++.||+|++|+++.....                           +...-+
T Consensus       283 ~w~ik~tl~s~~d~ir~l~~~~sep~lit~sed~~lk~WnLqk~~~s---------------------------~~~~~e  335 (577)
T KOG0642|consen  283 KWNIKFTLRSHDDCIRALAFHPSEPVLITASEDGTLKLWNLQKAKKS---------------------------AEKDVE  335 (577)
T ss_pred             ecceeeeeecchhhhhhhhcCCCCCeEEEeccccchhhhhhcccCCc---------------------------ccccee
Confidence            35566688889999999999999999999999999999998541100                           011345


Q ss_pred             cceecccCCcceEEEEEeCCCCEEEeecCCCeEEEEECCCC----------eeeeeeecCCCCeeeEEEccCCCEEEEEe
Q 042146           92 SLKTLIGHTNYVFCINFNPQSNRIVSDTFNETIRIWDIKTG----------KCLKVLPAHSDPVTAIDFNRDGTMIVTSS  161 (262)
Q Consensus        92 ~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~----------~~~~~~~~~~~~v~~~~~~~~~~~l~~~~  161 (262)
                      ++.++.+|.++|.|+++.+++..+++|+.||+|+.|++...          .....+.+|.+.++.+++|+....|++|+
T Consensus       336 pi~tfraH~gPVl~v~v~~n~~~~ysgg~Dg~I~~w~~p~n~dp~ds~dp~vl~~~l~Ghtdavw~l~~s~~~~~Llscs  415 (577)
T KOG0642|consen  336 PILTFRAHEGPVLCVVVPSNGEHCYSGGIDGTIRCWNLPPNQDPDDSYDPSVLSGTLLGHTDAVWLLALSSTKDRLLSCS  415 (577)
T ss_pred             eeEEEecccCceEEEEecCCceEEEeeccCceeeeeccCCCCCcccccCcchhccceeccccceeeeeecccccceeeec
Confidence            77889999999999999999999999999999999965421          23446778999999999999989999999


Q ss_pred             CCCeEEEEeCCC--------------------------------------------------------------------
Q 042146          162 YDGLYRILDAST--------------------------------------------------------------------  173 (262)
Q Consensus       162 ~dg~i~~~d~~~--------------------------------------------------------------------  173 (262)
                      .||++++|+...                                                                    
T Consensus       416 ~DgTvr~w~~~~~~~~~f~~~~e~g~Plsvd~~ss~~a~~~~s~~~~~~~~~~~ev~s~~~~~~s~~~~~~~~~~~in~v  495 (577)
T KOG0642|consen  416 SDGTVRLWEPTEESPCTFGEPKEHGYPLSVDRTSSRPAHSLASFRFGYTSIDDMEVVSDLLIFESSASPGPRRYPQINKV  495 (577)
T ss_pred             CCceEEeeccCCcCccccCCccccCCcceEeeccchhHhhhhhcccccccchhhhhhhheeeccccCCCcccccCccceE
Confidence            999999998654                                                                    


Q ss_pred             ---CCccEEEEEcCCCeEEEEecCCCceeeEEeccCCceeEEEEEEecCCCeeEEccccceEEEEEcCCCCeEEEeeecC
Q 042146          174 ---PNGKFILVGTLDNTLRLWNYSTRKILKTYSGYTNSKYCISSTFSVTNGKYIVSHRDPVISVASHPAKNIIASGALDN  250 (262)
Q Consensus       174 ---~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~d~  250 (262)
                         ++..+.+++.+|+.|+++|..+++++.....                      |...++++++.|+|.+|++++  .
T Consensus       496 Vs~~~~~~~~~~hed~~Ir~~dn~~~~~l~s~~a----------------------~~~svtslai~~ng~~l~s~s--~  551 (577)
T KOG0642|consen  496 VSHPTADITFTAHEDRSIRFFDNKTGKILHSMVA----------------------HKDSVTSLAIDPNGPYLMSGS--H  551 (577)
T ss_pred             EecCCCCeeEecccCCceecccccccccchheee----------------------ccceecceeecCCCceEEeec--C
Confidence               6678888999999999999999999888776                      889999999999999999999  9


Q ss_pred             CCcEEEEeecc
Q 042146          251 DRTMKIWTQEK  261 (262)
Q Consensus       251 d~~i~iw~~~~  261 (262)
                      |+.+++|++..
T Consensus       552 d~sv~l~kld~  562 (577)
T KOG0642|consen  552 DGSVRLWKLDV  562 (577)
T ss_pred             Cceeehhhccc
Confidence            99999999853

>KOG0269 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.93  E-value=6.2e-24  Score=169.94  Aligned_cols=215  Identities=16%  Similarity=0.345  Sum_probs=164.1

Q ss_pred             cCceEEEEEccCCCeEEEecCCCeEEEeecCCCCCCCCC----CCCCCcccc-----CCc------cccccceeEEEEec
Q 042146           23 LRAVSYVKFSHDGRLLTSSSAEKTLLTYSLSSISNFDST----PPSPLQKFT-----GHE------QGISDLATIRLWDV   87 (262)
Q Consensus        23 ~~~v~~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~----~~~~~~~~~-----~~~------~~v~~~~~i~v~d~   87 (262)
                      .+...++..+++-..++.++. ..+++|.+.........    .......+.     .+.      ......+.|.+||+
T Consensus        39 k~~~nAIs~nr~~~qiv~AGr-s~lklyai~~~~~~~~~~~~~k~kqn~~~S~~DVkW~~~~~NlIAT~s~nG~i~vWdl  117 (839)
T KOG0269|consen   39 KAKANAISVNRDINQIVVAGR-SLLKLYAINPNDFSEKCNHRFKTKQNKFYSAADVKWGQLYSNLIATCSTNGVISVWDL  117 (839)
T ss_pred             ccccceEeecCCcceeEEecc-cceeeEeeCcccCCcceeeecccccceeeehhhcccccchhhhheeecCCCcEEEEec
Confidence            345677888899888888885 57888877653211100    000000000     000      11122238999999


Q ss_pred             CC---CccceecccCCcceEEEEEeC-CCCEEEeecCCCeEEEEECCCCeeeeeeecCCCCeeeEEEcc-CCCEEEEEeC
Q 042146           88 PT---ATSLKTLIGHTNYVFCINFNP-QSNRIVSDTFNETIRIWDIKTGKCLKVLPAHSDPVTAIDFNR-DGTMIVTSSY  162 (262)
Q Consensus        88 ~~---~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~  162 (262)
                      ..   .+.+..+..|...++++.|++ ...+|++|+.||+|++||++..+...++.+....|.++.|+| .+..|+++..
T Consensus       118 nk~~rnk~l~~f~EH~Rs~~~ldfh~tep~iliSGSQDg~vK~~DlR~~~S~~t~~~nSESiRDV~fsp~~~~~F~s~~d  197 (839)
T KOG0269|consen  118 NKSIRNKLLTVFNEHERSANKLDFHSTEPNILISGSQDGTVKCWDLRSKKSKSTFRSNSESIRDVKFSPGYGNKFASIHD  197 (839)
T ss_pred             CccccchhhhHhhhhccceeeeeeccCCccEEEecCCCceEEEEeeecccccccccccchhhhceeeccCCCceEEEecC
Confidence            87   455667889999999999999 677899999999999999999988888888888999999999 6789999999


Q ss_pred             CCeEEEEeCCC---------------------CCccEEEEEcCCCeEEEEecCCCce--eeEEeccCCceeEEEEEEecC
Q 042146          163 DGLYRILDAST---------------------PNGKFILVGTLDNTLRLWNYSTRKI--LKTYSGYTNSKYCISSTFSVT  219 (262)
Q Consensus       163 dg~i~~~d~~~---------------------~~~~~l~~~~~dg~i~i~d~~~~~~--~~~~~~~~~~~~~~~~~~~~~  219 (262)
                      .|.+.+||+|.                     |++.+||+|+.|+.|+|||..+.+.  +.++.                
T Consensus       198 sG~lqlWDlRqp~r~~~k~~AH~GpV~c~nwhPnr~~lATGGRDK~vkiWd~t~~~~~~~~tIn----------------  261 (839)
T KOG0269|consen  198 SGYLQLWDLRQPDRCEKKLTAHNGPVLCLNWHPNREWLATGGRDKMVKIWDMTDSRAKPKHTIN----------------  261 (839)
T ss_pred             CceEEEeeccCchhHHHHhhcccCceEEEeecCCCceeeecCCCccEEEEeccCCCccceeEEe----------------
Confidence            99999999998                     8999999999999999999986443  33333                


Q ss_pred             CCeeEEccccceEEEEEcCCCC-eEEEeeecCCCcEEEEeecc
Q 042146          220 NGKYIVSHRDPVISVASHPAKN-IIASGALDNDRTMKIWTQEK  261 (262)
Q Consensus       220 ~~~~~~~~~~~v~~~~~~p~~~-~l~~~~~d~d~~i~iw~~~~  261 (262)
                             ...+|.++.|-|..+ .||++++-.|-.|+|||+..
T Consensus       262 -------Tiapv~rVkWRP~~~~hLAtcsmv~dtsV~VWDvrR  297 (839)
T KOG0269|consen  262 -------TIAPVGRVKWRPARSYHLATCSMVVDTSVHVWDVRR  297 (839)
T ss_pred             -------ecceeeeeeeccCccchhhhhhccccceEEEEeecc
Confidence                   456899999999865 57777655689999999864

>KOG1539 consensus WD repeat protein [General function prediction only]

Probab=99.92  E-value=2.5e-23  Score=167.73  Aligned_cols=234  Identities=19%  Similarity=0.329  Sum_probs=179.1

Q ss_pred             CCceeeec--ccccceec-ccCcCceEEEEEccCCCeEEEecCCCeEEEeecCCCCCC---------CCCCCCCCccccC
Q 042146            4 DRSLESFR--PYTLTQTL-NGHLRAVSYVKFSHDGRLLTSSSAEKTLLTYSLSSISNF---------DSTPPSPLQKFTG   71 (262)
Q Consensus         4 d~~i~~~~--~~~~~~~~-~~h~~~v~~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~---------~~~~~~~~~~~~~   71 (262)
                      .|.+..|+  ..+++..+ ..|.+.|....|.|....+++++.|+.+++|=.+.....         ...++..+..+..
T Consensus       266 ~G~m~~wDLe~kkl~~v~~nah~~sv~~~~fl~~epVl~ta~~DnSlk~~vfD~~dg~pR~LR~R~GHs~Pp~~irfy~~  345 (910)
T KOG1539|consen  266 NGDMAFWDLEKKKLINVTRNAHYGSVTGATFLPGEPVLVTAGADNSLKVWVFDSGDGVPRLLRSRGGHSAPPSCIRFYGS  345 (910)
T ss_pred             CceEEEEEcCCCeeeeeeeccccCCcccceecCCCceEeeccCCCceeEEEeeCCCCcchheeeccCCCCCchheeeecc
Confidence            35555554  45555444 489999999999999999999999999999976632110         0111111110000


Q ss_pred             Cc-------------------------------------c-----------ccccce--------------------eEE
Q 042146           72 HE-------------------------------------Q-----------GISDLA--------------------TIR   83 (262)
Q Consensus        72 ~~-------------------------------------~-----------~v~~~~--------------------~i~   83 (262)
                      ..                                     .           ++...+                    ..+
T Consensus       346 ~g~~ilsa~~Drt~r~fs~~~e~~~~~l~~~~~~~~~kk~~~~~~~~~k~p~i~~fa~~~~RE~~W~Nv~~~h~~~~~~~  425 (910)
T KOG1539|consen  346 QGHFILSAKQDRTLRSFSVISESQSQELGQLHNKKRAKKVNVFSTEKLKLPPIVEFAFENAREKEWDNVITAHKGKRSAY  425 (910)
T ss_pred             CcEEEEecccCcchhhhhhhHHHHhHhhcccccccccccccccchhhhcCCcceeeecccchhhhhcceeEEecCcceEE
Confidence            00                                     0           000000                    677


Q ss_pred             EEecCCCcc-ceec-----ccCCcceEEEEEeCCCCEEEeecCCCeEEEEECCCCeeeeee---ecCCCCeeeEEEccCC
Q 042146           84 LWDVPTATS-LKTL-----IGHTNYVFCINFNPQSNRIVSDTFNETIRIWDIKTGKCLKVL---PAHSDPVTAIDFNRDG  154 (262)
Q Consensus        84 v~d~~~~~~-~~~~-----~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~---~~~~~~v~~~~~~~~~  154 (262)
                      .|+..+... ...+     +.-...+++++.++.|++.+.|+..|.|-+|++++|-....+   ..|.++|+.++...-+
T Consensus       426 tW~~~n~~~G~~~L~~~~~~~~~~~~~av~vs~CGNF~~IG~S~G~Id~fNmQSGi~r~sf~~~~ah~~~V~gla~D~~n  505 (910)
T KOG1539|consen  426 TWNFRNKTSGRHVLDPKRFKKDDINATAVCVSFCGNFVFIGYSKGTIDRFNMQSGIHRKSFGDSPAHKGEVTGLAVDGTN  505 (910)
T ss_pred             EEeccCcccccEEecCccccccCcceEEEEEeccCceEEEeccCCeEEEEEcccCeeecccccCccccCceeEEEecCCC
Confidence            888766543 2222     223367899999999999999999999999999999888887   5899999999999989


Q ss_pred             CEEEEEeCCCeEEEEeCCC-------------------CCccEEEEEcCCCeEEEEecCCCceeeEEeccCCceeEEEEE
Q 042146          155 TMIVTSSYDGLYRILDAST-------------------PNGKFILVGTLDNTLRLWNYSTRKILKTYSGYTNSKYCISST  215 (262)
Q Consensus       155 ~~l~~~~~dg~i~~~d~~~-------------------~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~  215 (262)
                      +.+++++.+|.++.||...                   .....++.+..|-.|+++|..+.+.++.|.+           
T Consensus       506 ~~~vsa~~~Gilkfw~f~~k~l~~~l~l~~~~~~iv~hr~s~l~a~~~ddf~I~vvD~~t~kvvR~f~g-----------  574 (910)
T KOG1539|consen  506 RLLVSAGADGILKFWDFKKKVLKKSLRLGSSITGIVYHRVSDLLAIALDDFSIRVVDVVTRKVVREFWG-----------  574 (910)
T ss_pred             ceEEEccCcceEEEEecCCcceeeeeccCCCcceeeeeehhhhhhhhcCceeEEEEEchhhhhhHHhhc-----------
Confidence            9999999999999999876                   3456788889999999999999999999998           


Q ss_pred             EecCCCeeEEccccceEEEEEcCCCCeEEEeeecCCCcEEEEeecc
Q 042146          216 FSVTNGKYIVSHRDPVISVASHPAKNIIASGALDNDRTMKIWTQEK  261 (262)
Q Consensus       216 ~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~d~d~~i~iw~~~~  261 (262)
                                 |...|++++|||||+.|++++  .|++|++||+..
T Consensus       575 -----------h~nritd~~FS~DgrWlisas--mD~tIr~wDlpt  607 (910)
T KOG1539|consen  575 -----------HGNRITDMTFSPDGRWLISAS--MDSTIRTWDLPT  607 (910)
T ss_pred             -----------cccceeeeEeCCCCcEEEEee--cCCcEEEEeccC
Confidence                       999999999999999999999  889999999864

>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein

Probab=99.92  E-value=9.4e-22  Score=152.04  Aligned_cols=233  Identities=16%  Similarity=0.183  Sum_probs=164.2

Q ss_pred             CCCCceeeec--ccccceecccCcCceEEEEEccCCCeE-EEecCCCeEEEeecCCCCCCCCCC-CCCCcc--ccCCccc
Q 042146            2 SSDRSLESFR--PYTLTQTLNGHLRAVSYVKFSHDGRLL-TSSSAEKTLLTYSLSSISNFDSTP-PSPLQK--FTGHEQG   75 (262)
Q Consensus         2 s~d~~i~~~~--~~~~~~~~~~h~~~v~~~~~~~~~~~l-~s~~~d~~i~iw~~~~~~~~~~~~-~~~~~~--~~~~~~~   75 (262)
                      +.|+.+..|+  ..+..+.+..|.. +.+++|+|+++.+ ++++.++.|++||........... ......  +......
T Consensus         8 ~~d~~v~~~d~~t~~~~~~~~~~~~-~~~l~~~~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~g~~   86 (300)
T TIGR03866         8 EKDNTISVIDTATLEVTRTFPVGQR-PRGITLSKDGKLLYVCASDSDTIQVIDLATGEVIGTLPSGPDPELFALHPNGKI   86 (300)
T ss_pred             cCCCEEEEEECCCCceEEEEECCCC-CCceEECCCCCEEEEEECCCCeEEEEECCCCcEEEeccCCCCccEEEECCCCCE
Confidence            3578888887  4556777776544 6789999999876 567889999999987643322111 111111  1111111


Q ss_pred             c--c--cceeEEEEecCCCccceecccCCcceEEEEEeCCCCEEEeecCCC-eEEEEECCCCeeeeeeecCCCCeeeEEE
Q 042146           76 I--S--DLATIRLWDVPTATSLKTLIGHTNYVFCINFNPQSNRIVSDTFNE-TIRIWDIKTGKCLKVLPAHSDPVTAIDF  150 (262)
Q Consensus        76 v--~--~~~~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg-~i~vwd~~~~~~~~~~~~~~~~v~~~~~  150 (262)
                      +  .  ..+.+++||+.+.+.+..+.. ...+.+++|+|+++++++++.++ .+.+||.++++....... ......++|
T Consensus        87 l~~~~~~~~~l~~~d~~~~~~~~~~~~-~~~~~~~~~~~dg~~l~~~~~~~~~~~~~d~~~~~~~~~~~~-~~~~~~~~~  164 (300)
T TIGR03866        87 LYIANEDDNLVTVIDIETRKVLAEIPV-GVEPEGMAVSPDGKIVVNTSETTNMAHFIDTKTYEIVDNVLV-DQRPRFAEF  164 (300)
T ss_pred             EEEEcCCCCeEEEEECCCCeEEeEeeC-CCCcceEEECCCCCEEEEEecCCCeEEEEeCCCCeEEEEEEc-CCCccEEEE
Confidence            1  1  134899999988777666643 33468899999999999888765 567789988877665543 344578999


Q ss_pred             ccCCCEEEEE-eCCCeEEEEeCCC---------------------------CCccEEEE-EcCCCeEEEEecCCCceeeE
Q 042146          151 NRDGTMIVTS-SYDGLYRILDAST---------------------------PNGKFILV-GTLDNTLRLWNYSTRKILKT  201 (262)
Q Consensus       151 ~~~~~~l~~~-~~dg~i~~~d~~~---------------------------~~~~~l~~-~~~dg~i~i~d~~~~~~~~~  201 (262)
                      +|+++.|+++ ..++.|++||+.+                           ++++++++ ...++.+.+||+++++.+..
T Consensus       165 s~dg~~l~~~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~i~~s~dg~~~~~~~~~~~~i~v~d~~~~~~~~~  244 (300)
T TIGR03866       165 TADGKELWVSSEIGGTVSVIDVATRKVIKKITFEIPGVHPEAVQPVGIKLTKDGKTAFVALGPANRVAVVDAKTYEVLDY  244 (300)
T ss_pred             CCCCCEEEEEcCCCCEEEEEEcCcceeeeeeeecccccccccCCccceEECCCCCEEEEEcCCCCeEEEEECCCCcEEEE
Confidence            9999987554 4699999999864                           35665444 34566899999988877665


Q ss_pred             EeccCCceeEEEEEEecCCCeeEEccccceEEEEEcCCCCeEEEeeecCCCcEEEEeecc
Q 042146          202 YSGYTNSKYCISSTFSVTNGKYIVSHRDPVISVASHPAKNIIASGALDNDRTMKIWTQEK  261 (262)
Q Consensus       202 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~d~d~~i~iw~~~~  261 (262)
                      +.                       +...+.+++|+|++++|++++. .++.|++||++.
T Consensus       245 ~~-----------------------~~~~~~~~~~~~~g~~l~~~~~-~~~~i~v~d~~~  280 (300)
T TIGR03866       245 LL-----------------------VGQRVWQLAFTPDEKYLLTTNG-VSNDVSVIDVAA  280 (300)
T ss_pred             EE-----------------------eCCCcceEEECCCCCEEEEEcC-CCCeEEEEECCC
Confidence            43                       4457889999999999988642 589999999864

Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.

>KOG1273 consensus WD40 repeat protein [General function prediction only]

Probab=99.92  E-value=8.6e-23  Score=148.08  Aligned_cols=185  Identities=18%  Similarity=0.326  Sum_probs=151.3

Q ss_pred             cceecccCcCceEEEEEccCCCeEEEecCCCeEEEeecCCCCCCCCCCCCCCccccCCccccccceeEEEEecCCCccce
Q 042146           15 LTQTLNGHLRAVSYVKFSHDGRLLTSSSAEKTLLTYSLSSISNFDSTPPSPLQKFTGHEQGISDLATIRLWDVPTATSLK   94 (262)
Q Consensus        15 ~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~i~v~d~~~~~~~~   94 (262)
                      +..+++ |.. -.|+.|++.|.+||+|..||.|.|||+.                                   +...-+
T Consensus        17 l~~tld-~~~-a~~~~Fs~~G~~lAvGc~nG~vvI~D~~-----------------------------------T~~iar   59 (405)
T KOG1273|consen   17 LTHTLD-NPL-AECCQFSRWGDYLAVGCANGRVVIYDFD-----------------------------------TFRIAR   59 (405)
T ss_pred             hceecc-CCc-cceEEeccCcceeeeeccCCcEEEEEcc-----------------------------------ccchhh
Confidence            344443 333 7899999999999999999999888654                                   445566


Q ss_pred             ecccCCcceEEEEEeCCCCEEEeecCCCeEEEEECCCCeeeeeeecCCCCeeeEEEccCC-CEEEEEeCCCeEEEEeCCC
Q 042146           95 TLIGHTNYVFCINFNPQSNRIVSDTFNETIRIWDIKTGKCLKVLPAHSDPVTAIDFNRDG-TMIVTSSYDGLYRILDAST  173 (262)
Q Consensus        95 ~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~dg~i~~~d~~~  173 (262)
                      .+.+|..+|++++|+++|+.|+++|.|..|.+||+..+.+++.+. ..++|+.+.|+|.. +..+++-.+..-.+-++..
T Consensus        60 ~lsaH~~pi~sl~WS~dgr~LltsS~D~si~lwDl~~gs~l~rir-f~spv~~~q~hp~k~n~~va~~~~~sp~vi~~s~  138 (405)
T KOG1273|consen   60 MLSAHVRPITSLCWSRDGRKLLTSSRDWSIKLWDLLKGSPLKRIR-FDSPVWGAQWHPRKRNKCVATIMEESPVVIDFSD  138 (405)
T ss_pred             hhhccccceeEEEecCCCCEeeeecCCceeEEEeccCCCceeEEE-ccCccceeeeccccCCeEEEEEecCCcEEEEecC
Confidence            788899999999999999999999999999999999999999886 58899999999944 3444443333333433331


Q ss_pred             ------------------------CCccEEEEEcCCCeEEEEecCCCceeeEEeccCCceeEEEEEEecCCCeeEEcccc
Q 042146          174 ------------------------PNGKFILVGTLDNTLRLWNYSTRKILKTYSGYTNSKYCISSTFSVTNGKYIVSHRD  229 (262)
Q Consensus       174 ------------------------~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  229 (262)
                                              +.|+++++|+..|.+.++|..+.+++..++-.                     ...
T Consensus       139 ~~h~~Lp~d~d~dln~sas~~~fdr~g~yIitGtsKGkllv~~a~t~e~vas~rit---------------------s~~  197 (405)
T KOG1273|consen  139 PKHSVLPKDDDGDLNSSASHGVFDRRGKYIITGTSKGKLLVYDAETLECVASFRIT---------------------SVQ  197 (405)
T ss_pred             CceeeccCCCccccccccccccccCCCCEEEEecCcceEEEEecchheeeeeeeec---------------------hhe
Confidence                                    56899999999999999999999999888751                     225


Q ss_pred             ceEEEEEcCCCCeEEEeeecCCCcEEEEeec
Q 042146          230 PVISVASHPAKNIIASGALDNDRTMKIWTQE  260 (262)
Q Consensus       230 ~v~~~~~~p~~~~l~~~~~d~d~~i~iw~~~  260 (262)
                      .|..+.++..|+.|+.-+  .|..||.|+++
T Consensus       198 ~IK~I~~s~~g~~liiNt--sDRvIR~ye~~  226 (405)
T KOG1273|consen  198 AIKQIIVSRKGRFLIINT--SDRVIRTYEIS  226 (405)
T ss_pred             eeeEEEEeccCcEEEEec--CCceEEEEehh
Confidence            789999999999999999  89999999975

>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]

Probab=99.92  E-value=6e-23  Score=148.20  Aligned_cols=183  Identities=19%  Similarity=0.329  Sum_probs=142.9

Q ss_pred             CCCCceeeec--ccccceecccCcCceEEEEEccCCCeEEEecCCCeEEEeecCCCCCCCCCCCCCCccccCCccccccc
Q 042146            2 SSDRSLESFR--PYTLTQTLNGHLRAVSYVKFSHDGRLLTSSSAEKTLLTYSLSSISNFDSTPPSPLQKFTGHEQGISDL   79 (262)
Q Consensus         2 s~d~~i~~~~--~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~   79 (262)
                      |+||+++.|+  ...+...+ .|..++.+++|.++ ..+++|+.||.|+.+|+..                         
T Consensus        32 sWDgslrlYdv~~~~l~~~~-~~~~plL~c~F~d~-~~~~~G~~dg~vr~~Dln~-------------------------   84 (323)
T KOG1036|consen   32 SWDGSLRLYDVPANSLKLKF-KHGAPLLDCAFADE-STIVTGGLDGQVRRYDLNT-------------------------   84 (323)
T ss_pred             eccCcEEEEeccchhhhhhe-ecCCceeeeeccCC-ceEEEeccCceEEEEEecC-------------------------
Confidence            5799999986  33344444 58999999999874 4699999999999887643                         


Q ss_pred             eeEEEEecCCCccceecccCCcceEEEEEeCCCCEEEeecCCCeEEEEECCCCeeeeeeecCCCCeeeEEEccCCCEEEE
Q 042146           80 ATIRLWDVPTATSLKTLIGHTNYVFCINFNPQSNRIVSDTFNETIRIWDIKTGKCLKVLPAHSDPVTAIDFNRDGTMIVT  159 (262)
Q Consensus        80 ~~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~  159 (262)
                                +. ...+..|..+|.||..++....+++|+.|++|++||.+.......+.. ...|.++...  ++.|++
T Consensus        85 ----------~~-~~~igth~~~i~ci~~~~~~~~vIsgsWD~~ik~wD~R~~~~~~~~d~-~kkVy~~~v~--g~~LvV  150 (323)
T KOG1036|consen   85 ----------GN-EDQIGTHDEGIRCIEYSYEVGCVISGSWDKTIKFWDPRNKVVVGTFDQ-GKKVYCMDVS--GNRLVV  150 (323)
T ss_pred             ----------Cc-ceeeccCCCceEEEEeeccCCeEEEcccCccEEEEecccccccccccc-CceEEEEecc--CCEEEE
Confidence                      22 234456888999999998888899999999999999887555555543 3467777654  677888


Q ss_pred             EeCCCeEEEEeCCC------------------------------------------------------------------
Q 042146          160 SSYDGLYRILDAST------------------------------------------------------------------  173 (262)
Q Consensus       160 ~~~dg~i~~~d~~~------------------------------------------------------------------  173 (262)
                      |+.|..+.+||+|.                                                                  
T Consensus       151 g~~~r~v~iyDLRn~~~~~q~reS~lkyqtR~v~~~pn~eGy~~sSieGRVavE~~d~s~~~~skkyaFkCHr~~~~~~~  230 (323)
T KOG1036|consen  151 GTSDRKVLIYDLRNLDEPFQRRESSLKYQTRCVALVPNGEGYVVSSIEGRVAVEYFDDSEEAQSKKYAFKCHRLSEKDTE  230 (323)
T ss_pred             eecCceEEEEEcccccchhhhccccceeEEEEEEEecCCCceEEEeecceEEEEccCCchHHhhhceeEEeeecccCCce
Confidence            88888888888876                                                                  


Q ss_pred             -----------CCccEEEEEcCCCeEEEEecCCCceeeEEeccCCceeEEEEEEecCCCeeEEccccceEEEEEcCCCCe
Q 042146          174 -----------PNGKFILVGTLDNTLRLWNYSTRKILKTYSGYTNSKYCISSTFSVTNGKYIVSHRDPVISVASHPAKNI  242 (262)
Q Consensus       174 -----------~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~  242 (262)
                                 |-...|++|+.||.|.+||+.+.+.+..+..                      .+..|.+++|+.+|..
T Consensus       231 ~~yPVNai~Fhp~~~tfaTgGsDG~V~~Wd~~~rKrl~q~~~----------------------~~~SI~slsfs~dG~~  288 (323)
T KOG1036|consen  231 IIYPVNAIAFHPIHGTFATGGSDGIVNIWDLFNRKRLKQLAK----------------------YETSISSLSFSMDGSL  288 (323)
T ss_pred             EEEEeceeEeccccceEEecCCCceEEEccCcchhhhhhccC----------------------CCCceEEEEeccCCCe
Confidence                       4456689999999999999988888887765                      4567999999999999


Q ss_pred             EEEee
Q 042146          243 IASGA  247 (262)
Q Consensus       243 l~~~~  247 (262)
                      ||+++
T Consensus       289 LAia~  293 (323)
T KOG1036|consen  289 LAIAS  293 (323)
T ss_pred             EEEEe
Confidence            99987

>KOG2048 consensus WD40 repeat protein [General function prediction only]

Probab=99.92  E-value=1.2e-22  Score=160.41  Aligned_cols=215  Identities=17%  Similarity=0.253  Sum_probs=174.3

Q ss_pred             CcCceEEEEEccCCCeEEEecCCCeEEEeecCCCCCCC----CCCCCCCccccCC-c---cccccceeEEEEecCCCccc
Q 042146           22 HLRAVSYVKFSHDGRLLTSSSAEKTLLTYSLSSISNFD----STPPSPLQKFTGH-E---QGISDLATIRLWDVPTATSL   93 (262)
Q Consensus        22 h~~~v~~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~----~~~~~~~~~~~~~-~---~~v~~~~~i~v~d~~~~~~~   93 (262)
                      -..+|.+|||+.+.+.||.+-.||.|.+|++.......    ..+...+..+... .   ..+..-+.|.-||+.++++.
T Consensus        24 ~Ps~I~slA~s~kS~~lAvsRt~g~IEiwN~~~~w~~~~vi~g~~drsIE~L~W~e~~RLFS~g~sg~i~EwDl~~lk~~  103 (691)
T KOG2048|consen   24 KPSEIVSLAYSHKSNQLAVSRTDGNIEIWNLSNNWFLEPVIHGPEDRSIESLAWAEGGRLFSSGLSGSITEWDLHTLKQK  103 (691)
T ss_pred             eccceEEEEEeccCCceeeeccCCcEEEEccCCCceeeEEEecCCCCceeeEEEccCCeEEeecCCceEEEEecccCcee
Confidence            46889999999999999999999999999987632211    1111111111111 1   11222338999999999999


Q ss_pred             eecccCCcceEEEEEeCCCCEEEeecCCCeEEEEECCCCeeee--eeecCCCCeeeEEEccCCCEEEEEeCCCeEEEEeC
Q 042146           94 KTLIGHTNYVFCINFNPQSNRIVSDTFNETIRIWDIKTGKCLK--VLPAHSDPVTAIDFNRDGTMIVTSSYDGLYRILDA  171 (262)
Q Consensus        94 ~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~--~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~d~  171 (262)
                      ..+....+.|.+++.+|.+..++.|++||.++.++...++...  .+...++.|.++.|+|++..+++|+.||.|++||.
T Consensus       104 ~~~d~~gg~IWsiai~p~~~~l~IgcddGvl~~~s~~p~~I~~~r~l~rq~sRvLslsw~~~~~~i~~Gs~Dg~Iriwd~  183 (691)
T KOG2048|consen  104 YNIDSNGGAIWSIAINPENTILAIGCDDGVLYDFSIGPDKITYKRSLMRQKSRVLSLSWNPTGTKIAGGSIDGVIRIWDV  183 (691)
T ss_pred             EEecCCCcceeEEEeCCccceEEeecCCceEEEEecCCceEEEEeecccccceEEEEEecCCccEEEecccCceEEEEEc
Confidence            9999999999999999999999999999988888877776543  34445789999999999999999999999999998


Q ss_pred             CC---------------------------CCccEEEEEcCCCeEEEEecCCCceeeEEeccCCceeEEEEEEecCCCeeE
Q 042146          172 ST---------------------------PNGKFILVGTLDNTLRLWNYSTRKILKTYSGYTNSKYCISSTFSVTNGKYI  224 (262)
Q Consensus       172 ~~---------------------------~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  224 (262)
                      ..                           -....+++|...|.|++||...+.+++.+..                    
T Consensus       184 ~~~~t~~~~~~~~d~l~k~~~~iVWSv~~Lrd~tI~sgDS~G~V~FWd~~~gTLiqS~~~--------------------  243 (691)
T KOG2048|consen  184 KSGQTLHIITMQLDRLSKREPTIVWSVLFLRDSTIASGDSAGTVTFWDSIFGTLIQSHSC--------------------  243 (691)
T ss_pred             CCCceEEEeeecccccccCCceEEEEEEEeecCcEEEecCCceEEEEcccCcchhhhhhh--------------------
Confidence            77                           2456789999999999999999999998887                    


Q ss_pred             EccccceEEEEEcCCCCeEEEeeecCCCcEEEEeec
Q 042146          225 VSHRDPVISVASHPAKNIIASGALDNDRTMKIWTQE  260 (262)
Q Consensus       225 ~~~~~~v~~~~~~p~~~~l~~~~~d~d~~i~iw~~~  260 (262)
                        |.+.|.+++..+++.+++++|  -|+.|.-+...
T Consensus       244 --h~adVl~Lav~~~~d~vfsaG--vd~~ii~~~~~  275 (691)
T KOG2048|consen  244 --HDADVLALAVADNEDRVFSAG--VDPKIIQYSLT  275 (691)
T ss_pred             --hhcceeEEEEcCCCCeEEEcc--CCCceEEEEec
Confidence              889999999999999999999  78988877654

>KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown]

Probab=99.91  E-value=6.2e-23  Score=161.13  Aligned_cols=223  Identities=19%  Similarity=0.353  Sum_probs=161.8

Q ss_pred             CCCCceeeecccccc--------eecccCcCceEEEEEccCCCeEEEecCCCeEEEeecCCCCCCCCCCCCCCccccCCc
Q 042146            2 SSDRSLESFRPYTLT--------QTLNGHLRAVSYVKFSHDGRLLTSSSAEKTLLTYSLSSISNFDSTPPSPLQKFTGHE   73 (262)
Q Consensus         2 s~d~~i~~~~~~~~~--------~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~   73 (262)
                      ..||.|..++..+..        ..+..|...|..+.|-|-...|++++.|.+++.||+..                   
T Consensus        71 dE~G~i~l~dt~~~~fr~ee~~lk~~~aH~nAifDl~wapge~~lVsasGDsT~r~Wdvk~-------------------  131 (720)
T KOG0321|consen   71 DEDGGIILFDTKSIVFRLEERQLKKPLAHKNAIFDLKWAPGESLLVSASGDSTIRPWDVKT-------------------  131 (720)
T ss_pred             cCCCceeeecchhhhcchhhhhhcccccccceeEeeccCCCceeEEEccCCceeeeeeecc-------------------
Confidence            357777777643322        33567999999999999667899999999999886643                   


Q ss_pred             cccccceeEEEEecCCCccce--ecccCCcceEEEEEeC-CCCEEEeecCCCeEEEEECCCCe-----------------
Q 042146           74 QGISDLATIRLWDVPTATSLK--TLIGHTNYVFCINFNP-QSNRIVSDTFNETIRIWDIKTGK-----------------  133 (262)
Q Consensus        74 ~~v~~~~~i~v~d~~~~~~~~--~~~~~~~~v~~~~~~~-~~~~l~~~~~dg~i~vwd~~~~~-----------------  133 (262)
                                      .+...  .+.+|...|.+++|.| +...|++|+.||.|.|||++-..                 
T Consensus       132 ----------------s~l~G~~~~~GH~~SvkS~cf~~~n~~vF~tGgRDg~illWD~R~n~~d~~e~~~~~~~~~~n~  195 (720)
T KOG0321|consen  132 ----------------SRLVGGRLNLGHTGSVKSECFMPTNPAVFCTGGRDGEILLWDCRCNGVDALEEFDNRIYGRHNT  195 (720)
T ss_pred             ----------------ceeecceeecccccccchhhhccCCCcceeeccCCCcEEEEEEeccchhhHHHHhhhhhccccC
Confidence                            33333  3778999999999999 56678999999999999997431                 


Q ss_pred             ----------eeeeeecCCCCeee---EEEccCCCEEEEEeC-CCeEEEEeCCC--------------------------
Q 042146          134 ----------CLKVLPAHSDPVTA---IDFNRDGTMIVTSSY-DGLYRILDAST--------------------------  173 (262)
Q Consensus       134 ----------~~~~~~~~~~~v~~---~~~~~~~~~l~~~~~-dg~i~~~d~~~--------------------------  173 (262)
                                .++.-.++...|.+   +.+..|...|++++. |+.|++||++.                          
T Consensus       196 ~ptpskp~~kr~~k~kA~s~ti~ssvTvv~fkDe~tlaSaga~D~~iKVWDLRk~~~~~r~ep~~~~~~~t~skrs~G~~  275 (720)
T KOG0321|consen  196 APTPSKPLKKRIRKWKAASNTIFSSVTVVLFKDESTLASAGAADSTIKVWDLRKNYTAYRQEPRGSDKYPTHSKRSVGQV  275 (720)
T ss_pred             CCCCCchhhccccccccccCceeeeeEEEEEeccceeeeccCCCcceEEEeecccccccccCCCcccCccCcccceeeeE
Confidence                      01111234444555   556678889999987 99999999987                          


Q ss_pred             -----CCccEEEEEcCCCeEEEEecCCC--ceeeEEeccCCceeEEEEEEecCCCeeE----------------------
Q 042146          174 -----PNGKFILVGTLDNTLRLWNYSTR--KILKTYSGYTNSKYCISSTFSVTNGKYI----------------------  224 (262)
Q Consensus       174 -----~~~~~l~~~~~dg~i~i~d~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------------------  224 (262)
                           ..|.+|++.+.|+.|+.||+..-  .++..+.++...-.-+....++.+..++                      
T Consensus       276 nL~lDssGt~L~AsCtD~sIy~ynm~s~s~sP~~~~sg~~~~sf~vks~lSpd~~~l~SgSsd~~ayiw~vs~~e~~~~~  355 (720)
T KOG0321|consen  276 NLILDSSGTYLFASCTDNSIYFYNMRSLSISPVAEFSGKLNSSFYVKSELSPDDCSLLSGSSDEQAYIWVVSSPEAPPAL  355 (720)
T ss_pred             EEEecCCCCeEEEEecCCcEEEEeccccCcCchhhccCcccceeeeeeecCCCCceEeccCCCcceeeeeecCccCChhh
Confidence                 35688888888999999999853  3445555544444444444443333333                      


Q ss_pred             -EccccceEEEEEcCCC-CeEEEeeecCCCcEEEEeecc
Q 042146          225 -VSHRDPVISVASHPAK-NIIASGALDNDRTMKIWTQEK  261 (262)
Q Consensus       225 -~~~~~~v~~~~~~p~~-~~l~~~~~d~d~~i~iw~~~~  261 (262)
                       .+|.-.|++++|.|.. .-++|++  +|..++||++.+
T Consensus       356 l~Ght~eVt~V~w~pS~~t~v~TcS--dD~~~kiW~l~~  392 (720)
T KOG0321|consen  356 LLGHTREVTTVRWLPSATTPVATCS--DDFRVKIWRLSN  392 (720)
T ss_pred             hhCcceEEEEEeeccccCCCceeec--cCcceEEEeccC
Confidence             3388899999998853 2366667  899999999854

>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]

Probab=99.91  E-value=2.4e-23  Score=150.73  Aligned_cols=145  Identities=25%  Similarity=0.469  Sum_probs=127.9

Q ss_pred             eecccCCcceEEEEEeCCCCEEEeecCCCeEEEEECCCC------------------eeeeeeecCCCCeeeEEEccCCC
Q 042146           94 KTLIGHTNYVFCINFNPQSNRIVSDTFNETIRIWDIKTG------------------KCLKVLPAHSDPVTAIDFNRDGT  155 (262)
Q Consensus        94 ~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~------------------~~~~~~~~~~~~v~~~~~~~~~~  155 (262)
                      ..+..|+.++.+.+|+|||.++++|+.|..|+|.|++..                  -.++++..|..+|+++.|+|...
T Consensus       106 ~ylt~HK~~cR~aafs~DG~lvATGsaD~SIKildvermlaks~~~em~~~~~qa~hPvIRTlYDH~devn~l~FHPre~  185 (430)
T KOG0640|consen  106 KYLTSHKSPCRAAAFSPDGSLVATGSADASIKILDVERMLAKSKPKEMISGDTQARHPVIRTLYDHVDEVNDLDFHPRET  185 (430)
T ss_pred             EEEeecccceeeeeeCCCCcEEEccCCcceEEEeehhhhhhhcchhhhccCCcccCCceEeehhhccCcccceeecchhh
Confidence            345679999999999999999999999999999998621                  24667778999999999999999


Q ss_pred             EEEEEeCCCeEEEEeCCC----------------------CCccEEEEEcCCCeEEEEecCCCceeeEEeccCCceeEEE
Q 042146          156 MIVTSSYDGLYRILDAST----------------------PNGKFILVGTLDNTLRLWNYSTRKILKTYSGYTNSKYCIS  213 (262)
Q Consensus       156 ~l~~~~~dg~i~~~d~~~----------------------~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~  213 (262)
                      .|++++.|++|++||...                      |.|.+|++|+.-..+++||+.+.++...-...+.      
T Consensus       186 ILiS~srD~tvKlFDfsK~saKrA~K~~qd~~~vrsiSfHPsGefllvgTdHp~~rlYdv~T~QcfvsanPd~q------  259 (430)
T KOG0640|consen  186 ILISGSRDNTVKLFDFSKTSAKRAFKVFQDTEPVRSISFHPSGEFLLVGTDHPTLRLYDVNTYQCFVSANPDDQ------  259 (430)
T ss_pred             eEEeccCCCeEEEEecccHHHHHHHHHhhccceeeeEeecCCCceEEEecCCCceeEEeccceeEeeecCcccc------
Confidence            999999999999999876                      8999999999999999999998877554432111      


Q ss_pred             EEEecCCCeeEEccccceEEEEEcCCCCeEEEeeecCCCcEEEEee
Q 042146          214 STFSVTNGKYIVSHRDPVISVASHPAKNIIASGALDNDRTMKIWTQ  259 (262)
Q Consensus       214 ~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~d~d~~i~iw~~  259 (262)
                                   |.+.|+++.+++.+++.+|++  .||.|++||-
T Consensus       260 -------------ht~ai~~V~Ys~t~~lYvTaS--kDG~IklwDG  290 (430)
T KOG0640|consen  260 -------------HTGAITQVRYSSTGSLYVTAS--KDGAIKLWDG  290 (430)
T ss_pred             -------------cccceeEEEecCCccEEEEec--cCCcEEeecc
Confidence                         999999999999999999999  9999999984

>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]

Probab=99.91  E-value=8.4e-23  Score=156.90  Aligned_cols=219  Identities=19%  Similarity=0.292  Sum_probs=167.2

Q ss_pred             cCcCceEEEEEccCCCeEEEecCCCeEEEeecCCCCCCCCCCCCCC----ccccCCcccccc----------------ce
Q 042146           21 GHLRAVSYVKFSHDGRLLTSSSAEKTLLTYSLSSISNFDSTPPSPL----QKFTGHEQGISD----------------LA   80 (262)
Q Consensus        21 ~h~~~v~~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~----~~~~~~~~~v~~----------------~~   80 (262)
                      .....|++++|++.|..|++.+.....+|+|.+.....+...+...    ..-.+|...+.+                .+
T Consensus       212 ~E~h~i~sl~ys~Tg~~iLvvsg~aqakl~DRdG~~~~e~~KGDQYI~Dm~nTKGHia~lt~g~whP~~k~~FlT~s~Dg  291 (641)
T KOG0772|consen  212 CETHQINSLQYSVTGDQILVVSGSAQAKLLDRDGFEIVEFSKGDQYIRDMYNTKGHIAELTCGCWHPDNKEEFLTCSYDG  291 (641)
T ss_pred             ccccccceeeecCCCCeEEEEecCcceeEEccCCceeeeeeccchhhhhhhccCCceeeeeccccccCcccceEEecCCC
Confidence            3456799999999999999999899999999877544333332211    112233333322                33


Q ss_pred             eEEEEecCCCccceec------ccCCcceEEEEEeCCCCEEEeecCCCeEEEEECCCCe--e-eeeeecCCC--CeeeEE
Q 042146           81 TIRLWDVPTATSLKTL------IGHTNYVFCINFNPQSNRIVSDTFNETIRIWDIKTGK--C-LKVLPAHSD--PVTAID  149 (262)
Q Consensus        81 ~i~v~d~~~~~~~~~~------~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~--~-~~~~~~~~~--~v~~~~  149 (262)
                      ++++||+...+.....      .+..-+++.++|+|+++++|+|+.||.|.+|+..+..  + ...-.+|..  .|+|+.
T Consensus       292 tlRiWdv~~~k~q~qVik~k~~~g~Rv~~tsC~~nrdg~~iAagc~DGSIQ~W~~~~~~v~p~~~vk~AH~~g~~Itsi~  371 (641)
T KOG0772|consen  292 TLRIWDVNNTKSQLQVIKTKPAGGKRVPVTSCAWNRDGKLIAAGCLDGSIQIWDKGSRTVRPVMKVKDAHLPGQDITSIS  371 (641)
T ss_pred             cEEEEecCCchhheeEEeeccCCCcccCceeeecCCCcchhhhcccCCceeeeecCCcccccceEeeeccCCCCceeEEE
Confidence            9999999875433222      2233578999999999999999999999999975432  1 233356776  899999


Q ss_pred             EccCCCEEEEEeCCCeEEEEeCCC-----------------------CCccEEEEEc------CCCeEEEEecCCCceee
Q 042146          150 FNRDGTMIVTSSYDGLYRILDAST-----------------------PNGKFILVGT------LDNTLRLWNYSTRKILK  200 (262)
Q Consensus       150 ~~~~~~~l~~~~~dg~i~~~d~~~-----------------------~~~~~l~~~~------~dg~i~i~d~~~~~~~~  200 (262)
                      ||++|++|++-+.|+++++||++.                       |+.+++++|+      ..|.+.+||..+.+.+.
T Consensus       372 FS~dg~~LlSRg~D~tLKvWDLrq~kkpL~~~tgL~t~~~~tdc~FSPd~kli~TGtS~~~~~~~g~L~f~d~~t~d~v~  451 (641)
T KOG0772|consen  372 FSYDGNYLLSRGFDDTLKVWDLRQFKKPLNVRTGLPTPFPGTDCCFSPDDKLILTGTSAPNGMTAGTLFFFDRMTLDTVY  451 (641)
T ss_pred             eccccchhhhccCCCceeeeeccccccchhhhcCCCccCCCCccccCCCceEEEecccccCCCCCceEEEEeccceeeEE
Confidence            999999999999999999999997                       8889999986      34789999999988888


Q ss_pred             EEeccCCceeEEEEEEecCCCeeEEccccceEEEEEcCCCC
Q 042146          201 TYSGYTNSKYCISSTFSVTNGKYIVSHRDPVISVASHPAKN  241 (262)
Q Consensus       201 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~  241 (262)
                      .+.-.  ...+..+.|++.-++++++....-..+-|+|+..
T Consensus       452 ki~i~--~aSvv~~~WhpkLNQi~~gsgdG~~~vyYdp~~S  490 (641)
T KOG0772|consen  452 KIDIS--TASVVRCLWHPKLNQIFAGSGDGTAHVYYDPNES  490 (641)
T ss_pred             EecCC--CceEEEEeecchhhheeeecCCCceEEEECcccc
Confidence            87654  5667788899999999999887777888887643

>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]

Probab=99.91  E-value=7.8e-23  Score=152.27  Aligned_cols=195  Identities=21%  Similarity=0.388  Sum_probs=153.3

Q ss_pred             ecccCcCceEEEEEcc-CCCeEEEecCCCeEEEeecCCCCCCCCCCCCCCccccCCccccccceeEEEEecCCCccceec
Q 042146           18 TLNGHLRAVSYVKFSH-DGRLLTSSSAEKTLLTYSLSSISNFDSTPPSPLQKFTGHEQGISDLATIRLWDVPTATSLKTL   96 (262)
Q Consensus        18 ~~~~h~~~v~~~~~~~-~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~i~v~d~~~~~~~~~~   96 (262)
                      .+.||+++|..++|+| +...+|+||.|.+|.||.+......                            ..-.+++..+
T Consensus        76 ~v~GHt~~vLDi~w~PfnD~vIASgSeD~~v~vW~IPe~~l~----------------------------~~ltepvv~L  127 (472)
T KOG0303|consen   76 LVCGHTAPVLDIDWCPFNDCVIASGSEDTKVMVWQIPENGLT----------------------------RDLTEPVVEL  127 (472)
T ss_pred             CccCccccccccccCccCCceeecCCCCceEEEEECCCcccc----------------------------cCcccceEEE
Confidence            3468999999999999 5678999999999999987652211                            0112567788


Q ss_pred             ccCCcceEEEEEeC-CCCEEEeecCCCeEEEEECCCCeeeeeeecCCCCeeeEEEccCCCEEEEEeCCCeEEEEeCCC--
Q 042146           97 IGHTNYVFCINFNP-QSNRIVSDTFNETIRIWDIKTGKCLKVLPAHSDPVTAIDFNRDGTMIVTSSYDGLYRILDAST--  173 (262)
Q Consensus        97 ~~~~~~v~~~~~~~-~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~d~~~--  173 (262)
                      .+|...|.-++|+| -.+.|++++.|.+|.+||+.+++.+..+. |...|.++.|+.+|.+|++.+.|+.|++||.+.  
T Consensus       128 ~gH~rrVg~V~wHPtA~NVLlsag~Dn~v~iWnv~tgeali~l~-hpd~i~S~sfn~dGs~l~TtckDKkvRv~dpr~~~  206 (472)
T KOG0303|consen  128 YGHQRRVGLVQWHPTAPNVLLSAGSDNTVSIWNVGTGEALITLD-HPDMVYSMSFNRDGSLLCTTCKDKKVRVIDPRRGT  206 (472)
T ss_pred             eecceeEEEEeecccchhhHhhccCCceEEEEeccCCceeeecC-CCCeEEEEEeccCCceeeeecccceeEEEcCCCCc
Confidence            99999999999999 56788999999999999999999888887 999999999999999999999999999999987  


Q ss_pred             -------------------CCccEEEEEc---CCCeEEEEecCCCceeeEEeccCCceeEEEEEEecCCCeeEEccccce
Q 042146          174 -------------------PNGKFILVGT---LDNTLRLWNYSTRKILKTYSGYTNSKYCISSTFSVTNGKYIVSHRDPV  231 (262)
Q Consensus       174 -------------------~~~~~l~~~~---~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v  231 (262)
                                         .++..+-+|-   .+..+-+||..+.+....+...+                    ....|
T Consensus       207 ~v~e~~~heG~k~~Raifl~~g~i~tTGfsr~seRq~aLwdp~nl~eP~~~~elD--------------------tSnGv  266 (472)
T KOG0303|consen  207 VVSEGVAHEGAKPARAIFLASGKIFTTGFSRMSERQIALWDPNNLEEPIALQELD--------------------TSNGV  266 (472)
T ss_pred             EeeecccccCCCcceeEEeccCceeeeccccccccceeccCcccccCcceeEEec--------------------cCCce
Confidence                               4555444442   45678888876543322222111                    33456


Q ss_pred             EEEEEcCCCCeEEEeeecCCCcEEEEeeccC
Q 042146          232 ISVASHPAKNIIASGALDNDRTMKIWTQEKE  262 (262)
Q Consensus       232 ~~~~~~p~~~~l~~~~~d~d~~i~iw~~~~~  262 (262)
                      .---|.|+..+++.+|- .|+.||.|.+.++
T Consensus       267 l~PFyD~dt~ivYl~GK-GD~~IRYyEit~d  296 (472)
T KOG0303|consen  267 LLPFYDPDTSIVYLCGK-GDSSIRYFEITNE  296 (472)
T ss_pred             EEeeecCCCCEEEEEec-CCcceEEEEecCC
Confidence            66678999998887775 5999999998754

>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]

Probab=99.91  E-value=1.8e-22  Score=145.50  Aligned_cols=207  Identities=17%  Similarity=0.280  Sum_probs=149.7

Q ss_pred             CCCCceeeeccc---c-cceecccCcCceEEEEEccCCCeEEEecCCCeEEEeecCCCCCCCCCCCCCCccccCCccccc
Q 042146            2 SSDRSLESFRPY---T-LTQTLNGHLRAVSYVKFSHDGRLLTSSSAEKTLLTYSLSSISNFDSTPPSPLQKFTGHEQGIS   77 (262)
Q Consensus         2 s~d~~i~~~~~~---~-~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~   77 (262)
                      |.|++++.|+-.   . .-+....|.++|.+++|+.||..+++|+.|+.+++||+.                        
T Consensus        47 SWD~tVR~wevq~~g~~~~ka~~~~~~PvL~v~WsddgskVf~g~~Dk~~k~wDL~------------------------  102 (347)
T KOG0647|consen   47 SWDGTVRIWEVQNSGQLVPKAQQSHDGPVLDVCWSDDGSKVFSGGCDKQAKLWDLA------------------------  102 (347)
T ss_pred             ccCCceEEEEEecCCcccchhhhccCCCeEEEEEccCCceEEeeccCCceEEEEcc------------------------
Confidence            689999999621   1 224556799999999999999999999999998888654                        


Q ss_pred             cceeEEEEecCCCccceecccCCcceEEEEEeCCCC--EEEeecCCCeEEEEECCCCeeeeeeecCCCCeeeEEEccCCC
Q 042146           78 DLATIRLWDVPTATSLKTLIGHTNYVFCINFNPQSN--RIVSDTFNETIRIWDIKTGKCLKVLPAHSDPVTAIDFNRDGT  155 (262)
Q Consensus        78 ~~~~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~--~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~  155 (262)
                                 ++ .+..+..|.++|.++.|-+...  .|++||.|.+|+.||.+...++.++.- .+.+.++..-  ..
T Consensus       103 -----------S~-Q~~~v~~Hd~pvkt~~wv~~~~~~cl~TGSWDKTlKfWD~R~~~pv~t~~L-PeRvYa~Dv~--~p  167 (347)
T KOG0647|consen  103 -----------SG-QVSQVAAHDAPVKTCHWVPGMNYQCLVTGSWDKTLKFWDTRSSNPVATLQL-PERVYAADVL--YP  167 (347)
T ss_pred             -----------CC-CeeeeeecccceeEEEEecCCCcceeEecccccceeecccCCCCeeeeeec-cceeeehhcc--Cc
Confidence                       44 4556677999999999988554  799999999999999999888877753 4556665543  34


Q ss_pred             EEEEEeCCCeEEEEeCCC----------------------CCccEEEEEcCCCeEEEEecCCC--ceeeEEeccCC----
Q 042146          156 MIVTSSYDGLYRILDAST----------------------PNGKFILVGTLDNTLRLWNYSTR--KILKTYSGYTN----  207 (262)
Q Consensus       156 ~l~~~~~dg~i~~~d~~~----------------------~~~~~l~~~~~dg~i~i~d~~~~--~~~~~~~~~~~----  207 (262)
                      +++++..++.|.+|+++.                      .+.+..+.|+.+|.+.|..+..+  +.-.+|+-|..    
T Consensus       168 m~vVata~r~i~vynL~n~~te~k~~~SpLk~Q~R~va~f~d~~~~alGsiEGrv~iq~id~~~~~~nFtFkCHR~~~~~  247 (347)
T KOG0647|consen  168 MAVVATAERHIAVYNLENPPTEFKRIESPLKWQTRCVACFQDKDGFALGSIEGRVAIQYIDDPNPKDNFTFKCHRSTNSV  247 (347)
T ss_pred             eeEEEecCCcEEEEEcCCCcchhhhhcCcccceeeEEEEEecCCceEeeeecceEEEEecCCCCccCceeEEEeccCCCC
Confidence            677777788888888765                      34455577777777777766654  22233333321    


Q ss_pred             --ceeEE-EEEEecCCCeeEEc----------------------cccceEEEEEcCCCCeEEEee
Q 042146          208 --SKYCI-SSTFSVTNGKYIVS----------------------HRDPVISVASHPAKNIIASGA  247 (262)
Q Consensus       208 --~~~~~-~~~~~~~~~~~~~~----------------------~~~~v~~~~~~p~~~~l~~~~  247 (262)
                        .++.+ .++|.+.-+.++..                      |..+|++++|+.+|.++|.+.
T Consensus       248 ~~~VYaVNsi~FhP~hgtlvTaGsDGtf~FWDkdar~kLk~s~~~~qpItcc~fn~~G~ifaYA~  312 (347)
T KOG0647|consen  248 NDDVYAVNSIAFHPVHGTLVTAGSDGTFSFWDKDARTKLKTSETHPQPITCCSFNRNGSIFAYAL  312 (347)
T ss_pred             CCceEEecceEeecccceEEEecCCceEEEecchhhhhhhccCcCCCccceeEecCCCCEEEEEe
Confidence              13332 34455444443322                      888999999999999988764

>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]

Probab=99.91  E-value=9.7e-23  Score=148.44  Aligned_cols=153  Identities=21%  Similarity=0.402  Sum_probs=117.2

Q ss_pred             ccCcCceEEEEEcc-----CCCeEEEecCCCeEEEeecCCCC---CC----CCCCCCC----CccccCCc-cccc----c
Q 042146           20 NGHLRAVSYVKFSH-----DGRLLTSSSAEKTLLTYSLSSIS---NF----DSTPPSP----LQKFTGHE-QGIS----D   78 (262)
Q Consensus        20 ~~h~~~v~~~~~~~-----~~~~l~s~~~d~~i~iw~~~~~~---~~----~~~~~~~----~~~~~~~~-~~v~----~   78 (262)
                      +.|..+|..++|++     +-..+|+++. +.+.+|......   ..    +....+.    ...+.... .+..    .
T Consensus        35 ed~~~~I~gv~fN~~~~~~e~~vfatvG~-~rvtiy~c~~d~~ir~lq~y~D~d~~Esfytcsw~yd~~~~~p~la~~G~  113 (385)
T KOG1034|consen   35 EDHNKPIFGVAFNSFLGCDEPQVFATVGG-NRVTIYECPGDGGIRLLQSYADEDHDESFYTCSWSYDSNTGNPFLAAGGY  113 (385)
T ss_pred             ccCCCccceeeeehhcCCCCCceEEEeCC-cEEEEEEECCccceeeeeeccCCCCCcceEEEEEEecCCCCCeeEEeecc
Confidence            56889999999985     2345666654 678888875422   00    1111111    11111121 1221    3


Q ss_pred             ceeEEEEecCCCccceecccCCcceEEEEEeC-CCCEEEeecCCCeEEEEECCCCeeeeee---ecCCCCeeeEEEccCC
Q 042146           79 LATIRLWDVPTATSLKTLIGHTNYVFCINFNP-QSNRIVSDTFNETIRIWDIKTGKCLKVL---PAHSDPVTAIDFNRDG  154 (262)
Q Consensus        79 ~~~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~dg~i~vwd~~~~~~~~~~---~~~~~~v~~~~~~~~~  154 (262)
                      .+.|+|.|..+++....+.+|...|+.|.++| ..++++++|.|..|++|++++..++..+   .+|.+.|.++.|+++|
T Consensus       114 ~GvIrVid~~~~~~~~~~~ghG~sINeik~~p~~~qlvls~SkD~svRlwnI~~~~Cv~VfGG~egHrdeVLSvD~~~~g  193 (385)
T KOG1034|consen  114 LGVIRVIDVVSGQCSKNYRGHGGSINEIKFHPDRPQLVLSASKDHSVRLWNIQTDVCVAVFGGVEGHRDEVLSVDFSLDG  193 (385)
T ss_pred             eeEEEEEecchhhhccceeccCccchhhhcCCCCCcEEEEecCCceEEEEeccCCeEEEEecccccccCcEEEEEEcCCC
Confidence            34899999999999999999999999999999 5578899999999999999999998887   5699999999999999


Q ss_pred             CEEEEEeCCCeEEEEeCCC
Q 042146          155 TMIVTSSYDGLYRILDAST  173 (262)
Q Consensus       155 ~~l~~~~~dg~i~~~d~~~  173 (262)
                      .++++|+.|..+++|++..
T Consensus       194 d~i~ScGmDhslk~W~l~~  212 (385)
T KOG1034|consen  194 DRIASCGMDHSLKLWRLNV  212 (385)
T ss_pred             CeeeccCCcceEEEEecCh
Confidence            9999999999999999984

>KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair]

Probab=99.91  E-value=1.6e-22  Score=145.54  Aligned_cols=215  Identities=21%  Similarity=0.362  Sum_probs=165.2

Q ss_pred             ccCcCceEEEEEcc-CCCeEEEecCCCeEEEeecCCCCCCCCCCCCCCccccCCcccccc----------ceeEEEEecC
Q 042146           20 NGHLRAVSYVKFSH-DGRLLTSSSAEKTLLTYSLSSISNFDSTPPSPLQKFTGHEQGISD----------LATIRLWDVP   88 (262)
Q Consensus        20 ~~h~~~v~~~~~~~-~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~----------~~~i~v~d~~   88 (262)
                      .+|.-.|.++.|-| |.-+|.+++-|.++++||..+.+.....+.. -..+..+..++..          .-.|++-|+.
T Consensus        98 ~~Hky~iss~~WyP~DtGmFtssSFDhtlKVWDtnTlQ~a~~F~me-~~VYshamSp~a~sHcLiA~gtr~~~VrLCDi~  176 (397)
T KOG4283|consen   98 NGHKYAISSAIWYPIDTGMFTSSSFDHTLKVWDTNTLQEAVDFKME-GKVYSHAMSPMAMSHCLIAAGTRDVQVRLCDIA  176 (397)
T ss_pred             ccceeeeeeeEEeeecCceeecccccceEEEeecccceeeEEeecC-ceeehhhcChhhhcceEEEEecCCCcEEEEecc
Confidence            47889999999999 5668899999999999998775443222111 1111111111111          1189999999


Q ss_pred             CCccceecccCCcceEEEEEeCCCCE-EEeecCCCeEEEEECCCC-eeeee--------------eecCCCCeeeEEEcc
Q 042146           89 TATSLKTLIGHTNYVFCINFNPQSNR-IVSDTFNETIRIWDIKTG-KCLKV--------------LPAHSDPVTAIDFNR  152 (262)
Q Consensus        89 ~~~~~~~~~~~~~~v~~~~~~~~~~~-l~~~~~dg~i~vwd~~~~-~~~~~--------------~~~~~~~v~~~~~~~  152 (262)
                      .|...+++.+|.+.|.++.|+|...+ |++|+.||.|++||++.. -+...              -..|.+.+..++|..
T Consensus       177 SGs~sH~LsGHr~~vlaV~Wsp~~e~vLatgsaDg~irlWDiRrasgcf~~lD~hn~k~~p~~~~n~ah~gkvngla~tS  256 (397)
T KOG4283|consen  177 SGSFSHTLSGHRDGVLAVEWSPSSEWVLATGSADGAIRLWDIRRASGCFRVLDQHNTKRPPILKTNTAHYGKVNGLAWTS  256 (397)
T ss_pred             CCcceeeeccccCceEEEEeccCceeEEEecCCCceEEEEEeecccceeEEeecccCccCccccccccccceeeeeeecc
Confidence            99999999999999999999997665 689999999999999854 22222              235778899999999


Q ss_pred             CCCEEEEEeCCCeEEEEeCCC-------------------------CCccEEEEEcCCCeEEEEecCCCceeeEEeccCC
Q 042146          153 DGTMIVTSSYDGLYRILDAST-------------------------PNGKFILVGTLDNTLRLWNYSTRKILKTYSGYTN  207 (262)
Q Consensus       153 ~~~~l~~~~~dg~i~~~d~~~-------------------------~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~  207 (262)
                      ++.++++++.|..+++|+..+                         .+...++---.++.+.++++-.+..+..+..   
T Consensus       257 d~~~l~~~gtd~r~r~wn~~~G~ntl~~~g~~~~n~~~~~~~~~~~~~s~vfv~~p~~~~lall~~~sgs~ir~l~~---  333 (397)
T KOG4283|consen  257 DARYLASCGTDDRIRVWNMESGRNTLREFGPIIHNQTTSFAVHIQSMDSDVFVLFPNDGSLALLNLLEGSFVRRLST---  333 (397)
T ss_pred             cchhhhhccCccceEEeecccCcccccccccccccccccceEEEeecccceEEEEecCCeEEEEEccCceEEEeeec---
Confidence            999999999999999999876                         1222222233447788888888888888877   


Q ss_pred             ceeEEEEEEecCCCeeEEccccceEEEEEcCCCCeEEEeeecCCCcEEEEee
Q 042146          208 SKYCISSTFSVTNGKYIVSHRDPVISVASHPAKNIIASGALDNDRTMKIWTQ  259 (262)
Q Consensus       208 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~d~d~~i~iw~~  259 (262)
                                         |-..|.|.++-|+-+...++.  -|+.|..|-+
T Consensus       334 -------------------h~k~i~c~~~~~~fq~~~tg~--~d~ni~~w~p  364 (397)
T KOG4283|consen  334 -------------------HLKRINCAAYRPDFEQCFTGD--MNGNIYMWSP  364 (397)
T ss_pred             -------------------ccceeeEEeecCchhhhhccc--cCCccccccc
Confidence                               888899999999999999999  7899999965

>KOG4328 consensus WD40 protein [Function unknown]

Probab=99.91  E-value=3.4e-22  Score=151.32  Aligned_cols=223  Identities=17%  Similarity=0.319  Sum_probs=161.8

Q ss_pred             cccceecccCcCceEEEEEccCC--CeEEEecCCCeEEEeecCCCCCCCCCCCCCCccccCCccccccc-----------
Q 042146           13 YTLTQTLNGHLRAVSYVKFSHDG--RLLTSSSAEKTLLTYSLSSISNFDSTPPSPLQKFTGHEQGISDL-----------   79 (262)
Q Consensus        13 ~~~~~~~~~h~~~v~~~~~~~~~--~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~-----------   79 (262)
                      +.....++.|.++|++++|+|..  +++|+|..-|+|-+||+....    ........+..|...|..+           
T Consensus       176 ~~~~~v~kv~~~Rit~l~fHPt~~~~lva~GdK~G~VG~Wn~~~~~----~d~d~v~~f~~hs~~Vs~l~F~P~n~s~i~  251 (498)
T KOG4328|consen  176 YRILNVAKVTDRRITSLAFHPTENRKLVAVGDKGGQVGLWNFGTQE----KDKDGVYLFTPHSGPVSGLKFSPANTSQIY  251 (498)
T ss_pred             ceecceeEecccceEEEEecccCcceEEEEccCCCcEEEEecCCCC----CccCceEEeccCCccccceEecCCChhhee
Confidence            34455667789999999999964  589999999999999995210    0000011111111111111           


Q ss_pred             -------------------------------------------------eeEEEEecCCCcc-ceecccCCcceEEEEEe
Q 042146           80 -------------------------------------------------ATIRLWDVPTATS-LKTLIGHTNYVFCINFN  109 (262)
Q Consensus        80 -------------------------------------------------~~i~v~d~~~~~~-~~~~~~~~~~v~~~~~~  109 (262)
                                                                       +...+||++++.. ...+.-|+..|.+++++
T Consensus       252 ssSyDGtiR~~D~~~~i~e~v~s~~~d~~~fs~~d~~~e~~~vl~~~~~G~f~~iD~R~~~s~~~~~~lh~kKI~sv~~N  331 (498)
T KOG4328|consen  252 SSSYDGTIRLQDFEGNISEEVLSLDTDNIWFSSLDFSAESRSVLFGDNVGNFNVIDLRTDGSEYENLRLHKKKITSVALN  331 (498)
T ss_pred             eeccCceeeeeeecchhhHHHhhcCccceeeeeccccCCCccEEEeecccceEEEEeecCCccchhhhhhhcccceeecC
Confidence                                                             0567888877654 55566788899999999


Q ss_pred             C-CCCEEEeecCCCeEEEEECCCCee----eeeeecCCCCeeeEEEccCCCEEEEEeCCCeEEEEeCCC-----------
Q 042146          110 P-QSNRIVSDTFNETIRIWDIKTGKC----LKVLPAHSDPVTAIDFNRDGTMIVTSSYDGLYRILDAST-----------  173 (262)
Q Consensus       110 ~-~~~~l~~~~~dg~i~vwd~~~~~~----~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~d~~~-----------  173 (262)
                      | ...++++++.|++++|||++.-..    ......|...|.+..|||.+-.|++.+.|..|++||..-           
T Consensus       332 P~~p~~laT~s~D~T~kIWD~R~l~~K~sp~lst~~HrrsV~sAyFSPs~gtl~TT~~D~~IRv~dss~~sa~~~p~~~I  411 (498)
T KOG4328|consen  332 PVCPWFLATASLDQTAKIWDLRQLRGKASPFLSTLPHRRSVNSAYFSPSGGTLLTTCQDNEIRVFDSSCISAKDEPLGTI  411 (498)
T ss_pred             CCCchheeecccCcceeeeehhhhcCCCCcceecccccceeeeeEEcCCCCceEeeccCCceEEeecccccccCCcccee
Confidence            9 566789999999999999985322    222346999999999999877799999999999999841           


Q ss_pred             ------------------CCccEEEEEcCCCeEEEEecCCCceeeEEeccCCceeEEEEEEecCCCeeEEccccceE-EE
Q 042146          174 ------------------PNGKFILVGTLDNTLRLWNYSTRKILKTYSGYTNSKYCISSTFSVTNGKYIVSHRDPVI-SV  234 (262)
Q Consensus       174 ------------------~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~-~~  234 (262)
                                        |+..++++|-.-..|-|+|-..++.+..+....                     ...|. -.
T Consensus       412 ~Hn~~t~RwlT~fKA~W~P~~~li~vg~~~r~IDv~~~~~~q~v~el~~P~---------------------~~tI~~vn  470 (498)
T KOG4328|consen  412 PHNNRTGRWLTPFKAAWDPDYNLIVVGRYPRPIDVFDGNGGQMVCELHDPE---------------------SSTIPSVN  470 (498)
T ss_pred             eccCcccccccchhheeCCCccEEEEeccCcceeEEcCCCCEEeeeccCcc---------------------ccccccce
Confidence                              888999999988899999998888787765421                     11233 34


Q ss_pred             EEcCCCCeEEEeeecCCCcEEEEeecc
Q 042146          235 ASHPAKNIIASGALDNDRTMKIWTQEK  261 (262)
Q Consensus       235 ~~~p~~~~l~~~~~d~d~~i~iw~~~~  261 (262)
                      .|||-+..+++|+. .-|.|.||.-++
T Consensus       471 ~~HP~~~~~~aG~~-s~Gki~vft~k~  496 (498)
T KOG4328|consen  471 EFHPMRDTLAAGGN-SSGKIYVFTNKK  496 (498)
T ss_pred             eecccccceeccCC-ccceEEEEecCC
Confidence            79999996666653 688999987543

>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]

Probab=99.91  E-value=4.1e-23  Score=158.36  Aligned_cols=229  Identities=17%  Similarity=0.303  Sum_probs=180.3

Q ss_pred             Cceeeecc-----cccceeccc--CcCceEEEEEccCCCeEEEecCCCeEEEeecCCCCCCCCC--CCCCCcc--ccC-C
Q 042146            5 RSLESFRP-----YTLTQTLNG--HLRAVSYVKFSHDGRLLTSSSAEKTLLTYSLSSISNFDST--PPSPLQK--FTG-H   72 (262)
Q Consensus         5 ~~i~~~~~-----~~~~~~~~~--h~~~v~~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~--~~~~~~~--~~~-~   72 (262)
                      |.|++|+-     ..++..+.-  ...-|+++.+.|||+.|++|+.-.++.|||+......-..  ......+  +.. -
T Consensus       440 gcVKVWdis~pg~k~PvsqLdcl~rdnyiRSckL~pdgrtLivGGeastlsiWDLAapTprikaeltssapaCyALa~sp  519 (705)
T KOG0639|consen  440 GCVKVWDISQPGNKSPVSQLDCLNRDNYIRSCKLLPDGRTLIVGGEASTLSIWDLAAPTPRIKAELTSSAPACYALAISP  519 (705)
T ss_pred             CeEEEeeccCCCCCCccccccccCcccceeeeEecCCCceEEeccccceeeeeeccCCCcchhhhcCCcchhhhhhhcCC
Confidence            45666652     223444432  3566999999999999999999999999998653211100  0000000  000 0


Q ss_pred             cc----ccccceeEEEEecCCCccceecccCCcceEEEEEeCCCCEEEeecCCCeEEEEECCCCeeeeeeecCCCCeeeE
Q 042146           73 EQ----GISDLATIRLWDVPTATSLKTLIGHTNYVFCINFNPQSNRIVSDTFNETIRIWDIKTGKCLKVLPAHSDPVTAI  148 (262)
Q Consensus        73 ~~----~v~~~~~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~  148 (262)
                      ..    .....+.|.|||+.+...++.+++|.+.+.||.++++|..|-+|+-|.+|+.||+++++.+.... ..+.|.++
T Consensus       520 DakvcFsccsdGnI~vwDLhnq~~VrqfqGhtDGascIdis~dGtklWTGGlDntvRcWDlregrqlqqhd-F~SQIfSL  598 (705)
T KOG0639|consen  520 DAKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDISKDGTKLWTGGLDNTVRCWDLREGRQLQQHD-FSSQIFSL  598 (705)
T ss_pred             ccceeeeeccCCcEEEEEcccceeeecccCCCCCceeEEecCCCceeecCCCccceeehhhhhhhhhhhhh-hhhhheec
Confidence            11    11233489999999999999999999999999999999999999999999999999998776653 57889999


Q ss_pred             EEccCCCEEEEEeCCCeEEEEeCCC-------------------CCccEEEEEcCCCeEEEEecCCCceeeEEeccCCce
Q 042146          149 DFNRDGTMIVTSSYDGLYRILDAST-------------------PNGKFILVGTLDNTLRLWNYSTRKILKTYSGYTNSK  209 (262)
Q Consensus       149 ~~~~~~~~l~~~~~dg~i~~~d~~~-------------------~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~  209 (262)
                      -++|++.+++.|-.++.+-+.....                   +.|+++++.+.|..+..|...-|..+...+      
T Consensus       599 g~cP~~dWlavGMens~vevlh~skp~kyqlhlheScVLSlKFa~cGkwfvStGkDnlLnawrtPyGasiFqsk------  672 (705)
T KOG0639|consen  599 GYCPTGDWLAVGMENSNVEVLHTSKPEKYQLHLHESCVLSLKFAYCGKWFVSTGKDNLLNAWRTPYGASIFQSK------  672 (705)
T ss_pred             ccCCCccceeeecccCcEEEEecCCccceeecccccEEEEEEecccCceeeecCchhhhhhccCccccceeecc------
Confidence            9999999999999999998888765                   679999999999999999998888877666      


Q ss_pred             eEEEEEEecCCCeeEEccccceEEEEEcCCCCeEEEeeecCCCcEEEEee
Q 042146          210 YCISSTFSVTNGKYIVSHRDPVISVASHPAKNIIASGALDNDRTMKIWTQ  259 (262)
Q Consensus       210 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~d~d~~i~iw~~  259 (262)
                                       -...|.++..+.+.++++||+  .|....||.+
T Consensus       673 -----------------E~SsVlsCDIS~ddkyIVTGS--GdkkATVYeV  703 (705)
T KOG0639|consen  673 -----------------ESSSVLSCDISFDDKYIVTGS--GDKKATVYEV  703 (705)
T ss_pred             -----------------ccCcceeeeeccCceEEEecC--CCcceEEEEE
Confidence                             556899999999999999999  8888888875

>KOG1273 consensus WD40 repeat protein [General function prediction only]

Probab=99.91  E-value=8e-22  Score=143.12  Aligned_cols=234  Identities=21%  Similarity=0.342  Sum_probs=170.6

Q ss_pred             CCCc--eeeecccccceecccCcCceEEEEEccCCCeEEEecCCCeEEEeecCCCCCCC-CCCCCCCccccCCcccccc-
Q 042146            3 SDRS--LESFRPYTLTQTLNGHLRAVSYVKFSHDGRLLTSSSAEKTLLTYSLSSISNFD-STPPSPLQKFTGHEQGISD-   78 (262)
Q Consensus         3 ~d~~--i~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~-~~~~~~~~~~~~~~~~v~~-   78 (262)
                      .||.  |+++.++.+-+.+.+|..+|.+++||++|+.|+|+|.|..|.+||+..+.... ..-..++.....|...... 
T Consensus        43 ~nG~vvI~D~~T~~iar~lsaH~~pi~sl~WS~dgr~LltsS~D~si~lwDl~~gs~l~rirf~spv~~~q~hp~k~n~~  122 (405)
T KOG1273|consen   43 ANGRVVIYDFDTFRIARMLSAHVRPITSLCWSRDGRKLLTSSRDWSIKLWDLLKGSPLKRIRFDSPVWGAQWHPRKRNKC  122 (405)
T ss_pred             cCCcEEEEEccccchhhhhhccccceeEEEecCCCCEeeeecCCceeEEEeccCCCceeEEEccCccceeeeccccCCeE
Confidence            3565  45556888999999999999999999999999999999999999987654221 1112222222222222111 


Q ss_pred             ce-----eEEEEecCCCccc-eecc---cCCcceEEEEEeCCCCEEEeecCCCeEEEEECCCCeeeeeeecCC-CCeeeE
Q 042146           79 LA-----TIRLWDVPTATSL-KTLI---GHTNYVFCINFNPQSNRIVSDTFNETIRIWDIKTGKCLKVLPAHS-DPVTAI  148 (262)
Q Consensus        79 ~~-----~i~v~d~~~~~~~-~~~~---~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~-~~v~~~  148 (262)
                      +.     .-.+.++..+... ....   .....-.+..|++.|+++++|...|.+.++|.++.+++..++.-. ..|..+
T Consensus       123 va~~~~~sp~vi~~s~~~h~~Lp~d~d~dln~sas~~~fdr~g~yIitGtsKGkllv~~a~t~e~vas~rits~~~IK~I  202 (405)
T KOG1273|consen  123 VATIMEESPVVIDFSDPKHSVLPKDDDGDLNSSASHGVFDRRGKYIITGTSKGKLLVYDAETLECVASFRITSVQAIKQI  202 (405)
T ss_pred             EEEEecCCcEEEEecCCceeeccCCCccccccccccccccCCCCEEEEecCcceEEEEecchheeeeeeeechheeeeEE
Confidence            00     1112222211100 0000   011122234588899999999999999999999999998887655 789999


Q ss_pred             EEccCCCEEEEEeCCCeEEEEeCCC-------------------------------CCccEEEEEcC-CCeEEEEecCCC
Q 042146          149 DFNRDGTMIVTSSYDGLYRILDAST-------------------------------PNGKFILVGTL-DNTLRLWNYSTR  196 (262)
Q Consensus       149 ~~~~~~~~l~~~~~dg~i~~~d~~~-------------------------------~~~~~l~~~~~-dg~i~i~d~~~~  196 (262)
                      .++..|+.|+.-+.|+.|+.|+++.                               .+|.|+++|+. ...++||....|
T Consensus       203 ~~s~~g~~liiNtsDRvIR~ye~~di~~~~r~~e~e~~~K~qDvVNk~~Wk~ccfs~dgeYv~a~s~~aHaLYIWE~~~G  282 (405)
T KOG1273|consen  203 IVSRKGRFLIINTSDRVIRTYEISDIDDEGRDGEVEPEHKLQDVVNKLQWKKCCFSGDGEYVCAGSARAHALYIWEKSIG  282 (405)
T ss_pred             EEeccCcEEEEecCCceEEEEehhhhcccCccCCcChhHHHHHHHhhhhhhheeecCCccEEEeccccceeEEEEecCCc
Confidence            9999999999999999999999874                               67888888873 358999999999


Q ss_pred             ceeeEEeccCCceeEEEEEEecCCCeeEEccccceEEEEEcCCCCeEEEeeecCCCcEEEEeec
Q 042146          197 KILKTYSGYTNSKYCISSTFSVTNGKYIVSHRDPVISVASHPAKNIIASGALDNDRTMKIWTQE  260 (262)
Q Consensus       197 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~d~d~~i~iw~~~  260 (262)
                      .+++.+.+.                     .......+.|+|-...+++-.   .|.|++|...
T Consensus       283 sLVKILhG~---------------------kgE~l~DV~whp~rp~i~si~---sg~v~iw~~~  322 (405)
T KOG1273|consen  283 SLVKILHGT---------------------KGEELLDVNWHPVRPIIASIA---SGVVYIWAVV  322 (405)
T ss_pred             ceeeeecCC---------------------chhheeecccccceeeeeecc---CCceEEEEee
Confidence            999999872                     225678899999999998884   6899999864

>KOG0646 consensus WD40 repeat protein [General function prediction only]

Probab=99.91  E-value=7.3e-23  Score=155.18  Aligned_cols=171  Identities=18%  Similarity=0.364  Sum_probs=146.1

Q ss_pred             eeeecccccceecccCcCceEEEEEccCCCeEEEecCCCeEEEeecCCCCCCCCCCCCCCccccCCccccccceeEEEEe
Q 042146            7 LESFRPYTLTQTLNGHLRAVSYVKFSHDGRLLTSSSAEKTLLTYSLSSISNFDSTPPSPLQKFTGHEQGISDLATIRLWD   86 (262)
Q Consensus         7 i~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~i~v~d   86 (262)
                      +|...++.++..+.+|-.+|+|+.|+.||.+|+|||.||.|.+|.+.......                          +
T Consensus       107 lWelssG~LL~v~~aHYQ~ITcL~fs~dgs~iiTgskDg~V~vW~l~~lv~a~--------------------------~  160 (476)
T KOG0646|consen  107 LWELSSGILLNVLSAHYQSITCLKFSDDGSHIITGSKDGAVLVWLLTDLVSAD--------------------------N  160 (476)
T ss_pred             EEEeccccHHHHHHhhccceeEEEEeCCCcEEEecCCCccEEEEEEEeecccc--------------------------c
Confidence            34446889999999999999999999999999999999999999874321100                          1


Q ss_pred             cCCCccceecccCCcceEEEEEeCC--CCEEEeecCCCeEEEEECCCCeeeeeeecCCCCeeeEEEccCCCEEEEEeCCC
Q 042146           87 VPTATSLKTLIGHTNYVFCINFNPQ--SNRIVSDTFNETIRIWDIKTGKCLKVLPAHSDPVTAIDFNRDGTMIVTSSYDG  164 (262)
Q Consensus        87 ~~~~~~~~~~~~~~~~v~~~~~~~~--~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg  164 (262)
                      -.+..+++.+..|.-+|+.+...+.  ..++++++.|.++++||+..+..+.++. ....+.+++.+|-++.++.|+.+|
T Consensus       161 ~~~~~p~~~f~~HtlsITDl~ig~Gg~~~rl~TaS~D~t~k~wdlS~g~LLlti~-fp~si~av~lDpae~~~yiGt~~G  239 (476)
T KOG0646|consen  161 DHSVKPLHIFSDHTLSITDLQIGSGGTNARLYTASEDRTIKLWDLSLGVLLLTIT-FPSSIKAVALDPAERVVYIGTEEG  239 (476)
T ss_pred             CCCccceeeeccCcceeEEEEecCCCccceEEEecCCceEEEEEeccceeeEEEe-cCCcceeEEEcccccEEEecCCcc
Confidence            1134667788899999999998874  4689999999999999999999888875 577899999999999999999999


Q ss_pred             eEEEEeCCC--------------------------------------CCccEEEEEcCCCeEEEEecCCCceeeEEec
Q 042146          165 LYRILDAST--------------------------------------PNGKFILVGTLDNTLRLWNYSTRKILKTYSG  204 (262)
Q Consensus       165 ~i~~~d~~~--------------------------------------~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~  204 (262)
                      .|.+.++..                                      .|+..|++|+.||.+.|||+...++++++..
T Consensus       240 ~I~~~~~~~~~~~~~~v~~k~~~~~~t~~~~~~Gh~~~~~ITcLais~DgtlLlSGd~dg~VcvWdi~S~Q~iRtl~~  317 (476)
T KOG0646|consen  240 KIFQNLLFKLSGQSAGVNQKGRHEENTQINVLVGHENESAITCLAISTDGTLLLSGDEDGKVCVWDIYSKQCIRTLQT  317 (476)
T ss_pred             eEEeeehhcCCcccccccccccccccceeeeeccccCCcceeEEEEecCccEEEeeCCCCCEEEEecchHHHHHHHhh
Confidence            999887654                                      5899999999999999999999999988875

>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]

Probab=99.90  E-value=3.8e-23  Score=150.75  Aligned_cols=179  Identities=25%  Similarity=0.443  Sum_probs=147.6

Q ss_pred             eeEEEEecCCCccceecc--------cCCcceEEEEEeCCCCEEEeecCCCeEEEEECCCCeeeeeee-cCCCCeeeEEE
Q 042146           80 ATIRLWDVPTATSLKTLI--------GHTNYVFCINFNPQSNRIVSDTFNETIRIWDIKTGKCLKVLP-AHSDPVTAIDF  150 (262)
Q Consensus        80 ~~i~v~d~~~~~~~~~~~--------~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~-~~~~~v~~~~~  150 (262)
                      +-|.+|+..+|+..+.++        -+..+|.|+.|+.|...+++|+.||.|++|.+++|.+++.+. +|...|+|+.|
T Consensus       235 GFiEVWny~~GKlrKDLkYQAqd~fMMmd~aVlci~FSRDsEMlAsGsqDGkIKvWri~tG~ClRrFdrAHtkGvt~l~F  314 (508)
T KOG0275|consen  235 GFIEVWNYTTGKLRKDLKYQAQDNFMMMDDAVLCISFSRDSEMLASGSQDGKIKVWRIETGQCLRRFDRAHTKGVTCLSF  314 (508)
T ss_pred             ceeeeehhccchhhhhhhhhhhcceeecccceEEEeecccHHHhhccCcCCcEEEEEEecchHHHHhhhhhccCeeEEEE
Confidence            379999998887655432        366899999999999999999999999999999999999986 89999999999


Q ss_pred             ccCCCEEEEEeCCCeEEEEeCCC--------------------CCccEEEEEcCCCeEEEEecCCCceeeEEeccCCcee
Q 042146          151 NRDGTMIVTSSYDGLYRILDAST--------------------PNGKFILVGTLDNTLRLWNYSTRKILKTYSGYTNSKY  210 (262)
Q Consensus       151 ~~~~~~l~~~~~dg~i~~~d~~~--------------------~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~  210 (262)
                      +.|+..+++++.|.++++--+.+                    ++|..+++++.||+|++|+..+++++.+++.......
T Consensus       315 SrD~SqiLS~sfD~tvRiHGlKSGK~LKEfrGHsSyvn~a~ft~dG~~iisaSsDgtvkvW~~KtteC~~Tfk~~~~d~~  394 (508)
T KOG0275|consen  315 SRDNSQILSASFDQTVRIHGLKSGKCLKEFRGHSSYVNEATFTDDGHHIISASSDGTVKVWHGKTTECLSTFKPLGTDYP  394 (508)
T ss_pred             ccCcchhhcccccceEEEeccccchhHHHhcCccccccceEEcCCCCeEEEecCCccEEEecCcchhhhhhccCCCCccc
Confidence            99999999999999999998877                    7899999999999999999999999999886554433


Q ss_pred             EEEEEEec-CCCeeEEc------------------------cccceEEEEEcCCCCeEEEeeecCCCcEEEEeec
Q 042146          211 CISSTFSV-TNGKYIVS------------------------HRDPVISVASHPAKNIIASGALDNDRTMKIWTQE  260 (262)
Q Consensus       211 ~~~~~~~~-~~~~~~~~------------------------~~~~v~~~~~~p~~~~l~~~~~d~d~~i~iw~~~  260 (262)
                      ...+...+ ....+++.                        ..+...+...+|.|.++.+.+  +|+.++.|.+.
T Consensus       395 vnsv~~~PKnpeh~iVCNrsntv~imn~qGQvVrsfsSGkREgGdFi~~~lSpkGewiYcig--ED~vlYCF~~~  467 (508)
T KOG0275|consen  395 VNSVILLPKNPEHFIVCNRSNTVYIMNMQGQVVRSFSSGKREGGDFINAILSPKGEWIYCIG--EDGVLYCFSVL  467 (508)
T ss_pred             ceeEEEcCCCCceEEEEcCCCeEEEEeccceEEeeeccCCccCCceEEEEecCCCcEEEEEc--cCcEEEEEEee
Confidence            33322221 12222222                        334566778899999999999  99999998764

>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]

Probab=99.90  E-value=1.1e-21  Score=150.54  Aligned_cols=222  Identities=15%  Similarity=0.204  Sum_probs=172.0

Q ss_pred             cceecccCcCceEEEEEccCCCeEEEecCCCeEEEeecCCCCCCCCCCCCCCccccCCccccccce----eEEEEecCCC
Q 042146           15 LTQTLNGHLRAVSYVKFSHDGRLLTSSSAEKTLLTYSLSSISNFDSTPPSPLQKFTGHEQGISDLA----TIRLWDVPTA   90 (262)
Q Consensus        15 ~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~----~i~v~d~~~~   90 (262)
                      ......+|......++.+|+.+.++|++.|+.+++|+ +....+......+......|..++..++    ...+.|.++.
T Consensus       360 f~~~v~gh~delwgla~hps~~q~~T~gqdk~v~lW~-~~k~~wt~~~~d~~~~~~fhpsg~va~Gt~~G~w~V~d~e~~  438 (626)
T KOG2106|consen  360 FTLTVQGHGDELWGLATHPSKNQLLTCGQDKHVRLWN-DHKLEWTKIIEDPAECADFHPSGVVAVGTATGRWFVLDTETQ  438 (626)
T ss_pred             ceEEEEecccceeeEEcCCChhheeeccCcceEEEcc-CCceeEEEEecCceeEeeccCcceEEEeeccceEEEEecccc
Confidence            3345568999999999999999999999999999998 3333333333444555555655554444    6778899886


Q ss_pred             ccceecccCCcceEEEEEeCCCCEEEeecCCCeEEEEECCCC-eeeeee-ecCCCCeeeEEEccCCCEEEEEeCCCeEEE
Q 042146           91 TSLKTLIGHTNYVFCINFNPQSNRIVSDTFNETIRIWDIKTG-KCLKVL-PAHSDPVTAIDFNRDGTMIVTSSYDGLYRI  168 (262)
Q Consensus        91 ~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~-~~~~~~-~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~  168 (262)
                      ..+..... .+++++++|+|+|.+||.|+.|+.|++|-+..+ ...... +.+.++|+.+.|++|+++|.+-+.|-.|..
T Consensus       439 ~lv~~~~d-~~~ls~v~ysp~G~~lAvgs~d~~iyiy~Vs~~g~~y~r~~k~~gs~ithLDwS~Ds~~~~~~S~d~eiLy  517 (626)
T KOG2106|consen  439 DLVTIHTD-NEQLSVVRYSPDGAFLAVGSHDNHIYIYRVSANGRKYSRVGKCSGSPITHLDWSSDSQFLVSNSGDYEILY  517 (626)
T ss_pred             eeEEEEec-CCceEEEEEcCCCCEEEEecCCCeEEEEEECCCCcEEEEeeeecCceeEEeeecCCCceEEeccCceEEEE
Confidence            66555554 899999999999999999999999999988643 333333 334589999999999999999999999999


Q ss_pred             EeCCC--------------------------------------CCccEEEEEcCCCeEEEEecCCCceeeEEeccCCcee
Q 042146          169 LDAST--------------------------------------PNGKFILVGTLDNTLRLWNYSTRKILKTYSGYTNSKY  210 (262)
Q Consensus       169 ~d~~~--------------------------------------~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~  210 (262)
                      |....                                      .+.+.+++|.+.|.|++|...--++...+..      
T Consensus       518 W~~~~~~~~ts~kDvkW~t~~c~lGF~v~g~s~~t~i~a~~rs~~~~~lA~gdd~g~v~lf~yPc~s~rA~~he------  591 (626)
T KOG2106|consen  518 WKPSECKQITSVKDVKWATYTCTLGFEVFGGSDGTDINAVARSHCEKLLASGDDFGKVHLFSYPCSSPRAPSHE------  591 (626)
T ss_pred             EccccCcccceecceeeeeeEEEEEEEEecccCCchHHHhhhhhhhhhhhccccCceEEEEccccCCCccccee------
Confidence            95332                                      5678899999999999998664443332221      


Q ss_pred             EEEEEEecCCCeeEEccccceEEEEEcCCCCeEEEeeecCCCcEEEEee
Q 042146          211 CISSTFSVTNGKYIVSHRDPVISVASHPAKNIIASGALDNDRTMKIWTQ  259 (262)
Q Consensus       211 ~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~d~d~~i~iw~~  259 (262)
                                   ..+|...|++++|..+...|++.+  .|.+|..|++
T Consensus       592 -------------~~ghs~~vt~V~Fl~~d~~li~tg--~D~Si~qW~l  625 (626)
T KOG2106|consen  592 -------------YGGHSSHVTNVAFLCKDSHLISTG--KDTSIMQWRL  625 (626)
T ss_pred             -------------eccccceeEEEEEeeCCceEEecC--CCceEEEEEe
Confidence                         122899999999999999999999  8999999986

>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=99.90  E-value=2.6e-22  Score=157.64  Aligned_cols=157  Identities=23%  Similarity=0.441  Sum_probs=139.2

Q ss_pred             eEEEEecCCCccceecccCCcceEEEEEeCCCCEEEeecCCCeEEEEECCCCeeeeeeec-CCCCeeeEEEccCCCEEEE
Q 042146           81 TIRLWDVPTATSLKTLIGHTNYVFCINFNPQSNRIVSDTFNETIRIWDIKTGKCLKVLPA-HSDPVTAIDFNRDGTMIVT  159 (262)
Q Consensus        81 ~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~  159 (262)
                      .|++|+..++.......-+...|+++.|+++|.+|++|..+|.|.|||..+.+.+..+.. |...|.+++|.  +..+.+
T Consensus       198 ~vylW~~~s~~v~~l~~~~~~~vtSv~ws~~G~~LavG~~~g~v~iwD~~~~k~~~~~~~~h~~rvg~laW~--~~~lss  275 (484)
T KOG0305|consen  198 SVYLWSASSGSVTELCSFGEELVTSVKWSPDGSHLAVGTSDGTVQIWDVKEQKKTRTLRGSHASRVGSLAWN--SSVLSS  275 (484)
T ss_pred             eEEEEecCCCceEEeEecCCCceEEEEECCCCCEEEEeecCCeEEEEehhhccccccccCCcCceeEEEecc--CceEEE
Confidence            567777777765444444478999999999999999999999999999999999999988 99999999998  678999


Q ss_pred             EeCCCeEEEEeCCC---------------------CCccEEEEEcCCCeEEEEecCCCceeeEEeccCCceeEEEEEEec
Q 042146          160 SSYDGLYRILDAST---------------------PNGKFILVGTLDNTLRLWNYSTRKILKTYSGYTNSKYCISSTFSV  218 (262)
Q Consensus       160 ~~~dg~i~~~d~~~---------------------~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~  218 (262)
                      |+.|+.|..+|++.                     +++.++++|+.|+.+.|||....++...+..              
T Consensus       276 Gsr~~~I~~~dvR~~~~~~~~~~~H~qeVCgLkws~d~~~lASGgnDN~~~Iwd~~~~~p~~~~~~--------------  341 (484)
T KOG0305|consen  276 GSRDGKILNHDVRISQHVVSTLQGHRQEVCGLKWSPDGNQLASGGNDNVVFIWDGLSPEPKFTFTE--------------  341 (484)
T ss_pred             ecCCCcEEEEEEecchhhhhhhhcccceeeeeEECCCCCeeccCCCccceEeccCCCccccEEEec--------------
Confidence            99999999999987                     8999999999999999999987788888776              


Q ss_pred             CCCeeEEccccceEEEEEcCC-CCeEEEeeecCCCcEEEEeecc
Q 042146          219 TNGKYIVSHRDPVISVASHPA-KNIIASGALDNDRTMKIWTQEK  261 (262)
Q Consensus       219 ~~~~~~~~~~~~v~~~~~~p~-~~~l~~~~~d~d~~i~iw~~~~  261 (262)
                              |...|.+++|+|- ..+||+|+...|++|++|+...
T Consensus       342 --------H~aAVKA~awcP~q~~lLAsGGGs~D~~i~fwn~~~  377 (484)
T KOG0305|consen  342 --------HTAAVKALAWCPWQSGLLATGGGSADRCIKFWNTNT  377 (484)
T ss_pred             --------cceeeeEeeeCCCccCceEEcCCCcccEEEEEEcCC
Confidence                    9999999999995 6789999876899999999863

>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]

Probab=99.90  E-value=7.7e-21  Score=145.89  Aligned_cols=241  Identities=17%  Similarity=0.296  Sum_probs=164.2

Q ss_pred             cceecccCcCceEEEEEccCCCeEEEecCCC--------eEEEeecCCCCCC---------------CCCC---------
Q 042146           15 LTQTLNGHLRAVSYVKFSHDGRLLTSSSAEK--------TLLTYSLSSISNF---------------DSTP---------   62 (262)
Q Consensus        15 ~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~--------~i~iw~~~~~~~~---------------~~~~---------   62 (262)
                      ..+.+.+|...|.||+.+|+.-.+++|-.-|        .+++||..+....               ....         
T Consensus        96 ~Qr~y~GH~ddikc~~vHPdri~vatGQ~ag~~g~~~~phvriWdsv~L~TL~V~g~f~~GV~~vaFsk~~~G~~l~~vD  175 (626)
T KOG2106|consen   96 SQRHYLGHNDDIKCMAVHPDRIRVATGQGAGTSGRPLQPHVRIWDSVTLSTLHVIGFFDRGVTCVAFSKINGGSLLCAVD  175 (626)
T ss_pred             hcccccCCCCceEEEeecCCceeeccCcccccCCCcCCCeeeecccccceeeeeeccccccceeeeecccCCCceEEEec
Confidence            4566789999999999999999899886666        4999993221100               0000         


Q ss_pred             ---CCCCccc--c--CCccccc----------------------cceeEEEEecCCCcccee---ccc-CCcceEEEEEe
Q 042146           63 ---PSPLQKF--T--GHEQGIS----------------------DLATIRLWDVPTATSLKT---LIG-HTNYVFCINFN  109 (262)
Q Consensus        63 ---~~~~~~~--~--~~~~~v~----------------------~~~~i~v~d~~~~~~~~~---~~~-~~~~v~~~~~~  109 (262)
                         +..+..+  +  .....+.                      .-+.+..|+.+.+...+.   +.. .+..|.|++|.
T Consensus       176 ~s~~h~lSVWdWqk~~~~~~vk~sne~v~~a~FHPtd~nliit~Gk~H~~Fw~~~~~~l~k~~~~fek~ekk~Vl~v~F~  255 (626)
T KOG2106|consen  176 DSNPHMLSVWDWQKKAKLGPVKTSNEVVFLATFHPTDPNLIITCGKGHLYFWTLRGGSLVKRQGIFEKREKKFVLCVTFL  255 (626)
T ss_pred             CCCccccchhhchhhhccCcceeccceEEEEEeccCCCcEEEEeCCceEEEEEccCCceEEEeeccccccceEEEEEEEc
Confidence               0000000  0  0000110                      001889999887765543   222 33679999999


Q ss_pred             CCCCEEEeecCCCeEEEEECCCCeeeeeeecCCCCeeeEEEccCCCEEEEEeCCCeEEEEeCCC----------------
Q 042146          110 PQSNRIVSDTFNETIRIWDIKTGKCLKVLPAHSDPVTAIDFNRDGTMIVTSSYDGLYRILDAST----------------  173 (262)
Q Consensus       110 ~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~d~~~----------------  173 (262)
                      ++|. +++|.++|.|.||+..+.+..+....|.+.|.+++...+|.+|- |+.|+.|..||-.-                
T Consensus       256 engd-viTgDS~G~i~Iw~~~~~~~~k~~~aH~ggv~~L~~lr~GtllS-GgKDRki~~Wd~~y~k~r~~elPe~~G~iR  333 (626)
T KOG2106|consen  256 ENGD-VITGDSGGNILIWSKGTNRISKQVHAHDGGVFSLCMLRDGTLLS-GGKDRKIILWDDNYRKLRETELPEQFGPIR  333 (626)
T ss_pred             CCCC-EEeecCCceEEEEeCCCceEEeEeeecCCceEEEEEecCccEee-cCccceEEeccccccccccccCchhcCCee
Confidence            9876 67899999999999988887777779999999999999987655 99999999999322                


Q ss_pred             --------------------------------------------CCccEEEEEcCCCeEEEEecCCCceeeEEec-----
Q 042146          174 --------------------------------------------PNGKFILVGTLDNTLRLWNYSTRKILKTYSG-----  204 (262)
Q Consensus       174 --------------------------------------------~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~-----  204 (262)
                                                                  |+.+.+++++.|+.+++|+  ..+++.+..-     
T Consensus       334 tv~e~~~di~vGTtrN~iL~Gt~~~~f~~~v~gh~delwgla~hps~~q~~T~gqdk~v~lW~--~~k~~wt~~~~d~~~  411 (626)
T KOG2106|consen  334 TVAEGKGDILVGTTRNFILQGTLENGFTLTVQGHGDELWGLATHPSKNQLLTCGQDKHVRLWN--DHKLEWTKIIEDPAE  411 (626)
T ss_pred             EEecCCCcEEEeeccceEEEeeecCCceEEEEecccceeeEEcCCChhheeeccCcceEEEcc--CCceeEEEEecCcee
Confidence                                                        7788999999999999999  3444433321     


Q ss_pred             ----cCCceeEEE------EEEecCCCeeEEc--cccceEEEEEcCCCCeEEEeeecCCCcEEEEeecc
Q 042146          205 ----YTNSKYCIS------STFSVTNGKYIVS--HRDPVISVASHPAKNIIASGALDNDRTMKIWTQEK  261 (262)
Q Consensus       205 ----~~~~~~~~~------~~~~~~~~~~~~~--~~~~v~~~~~~p~~~~l~~~~~d~d~~i~iw~~~~  261 (262)
                          |...+..+.      +.+......++.-  ...++++++|+|+|.+||.|+  .|+.|+||.+..
T Consensus       412 ~~~fhpsg~va~Gt~~G~w~V~d~e~~~lv~~~~d~~~ls~v~ysp~G~~lAvgs--~d~~iyiy~Vs~  478 (626)
T KOG2106|consen  412 CADFHPSGVVAVGTATGRWFVLDTETQDLVTIHTDNEQLSVVRYSPDGAFLAVGS--HDNHIYIYRVSA  478 (626)
T ss_pred             EeeccCcceEEEeeccceEEEEecccceeEEEEecCCceEEEEEcCCCCEEEEec--CCCeEEEEEECC
Confidence                111111110      0111112222221  467899999999999999999  999999998864

>KOG0294 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.90  E-value=1.2e-21  Score=142.12  Aligned_cols=159  Identities=18%  Similarity=0.347  Sum_probs=128.4

Q ss_pred             CCCCceeeec--ccccceecccCcCceEEEEEccCCC--eEEEecCCCeEEEeecCCCCCCCCCCCCCCccccCCccccc
Q 042146            2 SSDRSLESFR--PYTLTQTLNGHLRAVSYVKFSHDGR--LLTSSSAEKTLLTYSLSSISNFDSTPPSPLQKFTGHEQGIS   77 (262)
Q Consensus         2 s~d~~i~~~~--~~~~~~~~~~h~~~v~~~~~~~~~~--~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~   77 (262)
                      |+|.+|.+|+  .......+-.|.+.|+++.|.+.-.  .|++|+.||.|.+|+.                         
T Consensus        60 ssDetI~IYDm~k~~qlg~ll~HagsitaL~F~~~~S~shLlS~sdDG~i~iw~~-------------------------  114 (362)
T KOG0294|consen   60 SSDETIHIYDMRKRKQLGILLSHAGSITALKFYPPLSKSHLLSGSDDGHIIIWRV-------------------------  114 (362)
T ss_pred             CCCCcEEEEeccchhhhcceeccccceEEEEecCCcchhheeeecCCCcEEEEEc-------------------------
Confidence            5789999886  4556778888999999999998764  8999999999888854                         


Q ss_pred             cceeEEEEecCCCccceecccCCcceEEEEEeCCCCEEEeecCCCeEEEEECCCCeeeeeeec-----------------
Q 042146           78 DLATIRLWDVPTATSLKTLIGHTNYVFCINFNPQSNRIVSDTFNETIRIWDIKTGKCLKVLPA-----------------  140 (262)
Q Consensus        78 ~~~~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~-----------------  140 (262)
                                .....+.++++|.+.|+.++++|.+++.++.+.|+.+++||+-+|+.-..++-                 
T Consensus       115 ----------~~W~~~~slK~H~~~Vt~lsiHPS~KLALsVg~D~~lr~WNLV~Gr~a~v~~L~~~at~v~w~~~Gd~F~  184 (362)
T KOG0294|consen  115 ----------GSWELLKSLKAHKGQVTDLSIHPSGKLALSVGGDQVLRTWNLVRGRVAFVLNLKNKATLVSWSPQGDHFV  184 (362)
T ss_pred             ----------CCeEEeeeecccccccceeEecCCCceEEEEcCCceeeeehhhcCccceeeccCCcceeeEEcCCCCEEE
Confidence                      45677889999999999999999999999999999999999977643221110                 


Q ss_pred             ----------------------CCCCeeeEEEccCCCEEEEEeCCCeEEEEeCCC----------------------CCc
Q 042146          141 ----------------------HSDPVTAIDFNRDGTMIVTSSYDGLYRILDAST----------------------PNG  176 (262)
Q Consensus       141 ----------------------~~~~v~~~~~~~~~~~l~~~~~dg~i~~~d~~~----------------------~~~  176 (262)
                                            ....+.++.|- ++..|++|..|+.|.+||..+                      +.+
T Consensus       185 v~~~~~i~i~q~d~A~v~~~i~~~~r~l~~~~l-~~~~L~vG~d~~~i~~~D~ds~~~~~~~~AH~~RVK~i~~~~~~~~  263 (362)
T KOG0294|consen  185 VSGRNKIDIYQLDNASVFREIENPKRILCATFL-DGSELLVGGDNEWISLKDTDSDTPLTEFLAHENRVKDIASYTNPEH  263 (362)
T ss_pred             EEeccEEEEEecccHhHhhhhhccccceeeeec-CCceEEEecCCceEEEeccCCCccceeeecchhheeeeEEEecCCc
Confidence                                  01123444443 466788888899999999885                      678


Q ss_pred             cEEEEEcCCCeEEEEecCCC
Q 042146          177 KFILVGTLDNTLRLWNYSTR  196 (262)
Q Consensus       177 ~~l~~~~~dg~i~i~d~~~~  196 (262)
                      .+|++++.||.|++||++..
T Consensus       264 ~~lvTaSSDG~I~vWd~~~~  283 (362)
T KOG0294|consen  264 EYLVTASSDGFIKVWDIDME  283 (362)
T ss_pred             eEEEEeccCceEEEEEcccc
Confidence            89999999999999999865

>KOG1188 consensus WD40 repeat protein [General function prediction only]

Probab=99.90  E-value=5.6e-22  Score=145.12  Aligned_cols=233  Identities=17%  Similarity=0.283  Sum_probs=167.9

Q ss_pred             CCCceeeeccc--ccceecccCcCceEEEEEcc--CCCeEEEecCCCeEEEeecCCCCCCCC-----CCCCCCccccCC-
Q 042146            3 SDRSLESFRPY--TLTQTLNGHLRAVSYVKFSH--DGRLLTSSSAEKTLLTYSLSSISNFDS-----TPPSPLQKFTGH-   72 (262)
Q Consensus         3 ~d~~i~~~~~~--~~~~~~~~h~~~v~~~~~~~--~~~~l~s~~~d~~i~iw~~~~~~~~~~-----~~~~~~~~~~~~-   72 (262)
                      +.|+++.|++.  +.+..+++|+..++.++|..  ....+.+++.||+|++||+........     .++.+...+... 
T Consensus        48 Sngsv~lyd~~tg~~l~~fk~~~~~~N~vrf~~~ds~h~v~s~ssDG~Vr~wD~Rs~~e~a~~~~~~~~~~~f~~ld~nc  127 (376)
T KOG1188|consen   48 SNGSVRLYDKGTGQLLEEFKGPPATTNGVRFISCDSPHGVISCSSDGTVRLWDIRSQAESARISWTQQSGTPFICLDLNC  127 (376)
T ss_pred             cCCeEEEEeccchhhhheecCCCCcccceEEecCCCCCeeEEeccCCeEEEEEeecchhhhheeccCCCCCcceEeeccC
Confidence            46888888754  48999999999999999977  466899999999999999876433221     112233333221 


Q ss_pred             c--------cccccceeEEEEecCCCcc-ceec-ccCCcceEEEEEeC-CCCEEEeecCCCeEEEEECCCCe----eeee
Q 042146           73 E--------QGISDLATIRLWDVPTATS-LKTL-IGHTNYVFCINFNP-QSNRIVSDTFNETIRIWDIKTGK----CLKV  137 (262)
Q Consensus        73 ~--------~~v~~~~~i~v~d~~~~~~-~~~~-~~~~~~v~~~~~~~-~~~~l~~~~~dg~i~vwd~~~~~----~~~~  137 (262)
                      .        ......+.|.+||++..+. +..+ ..|...|++++|+| +.++|++||.||.|.++|++...    ++..
T Consensus       128 k~~ii~~GtE~~~s~A~v~lwDvR~~qq~l~~~~eSH~DDVT~lrFHP~~pnlLlSGSvDGLvnlfD~~~d~EeDaL~~v  207 (376)
T KOG1188|consen  128 KKNIIACGTELTRSDASVVLWDVRSEQQLLRQLNESHNDDVTQLRFHPSDPNLLLSGSVDGLVNLFDTKKDNEEDALLHV  207 (376)
T ss_pred             cCCeEEeccccccCceEEEEEEeccccchhhhhhhhccCcceeEEecCCCCCeEEeecccceEEeeecCCCcchhhHHHh
Confidence            2        2233445899999998776 5544 56999999999999 77899999999999999997442    2334


Q ss_pred             eecCCCCeeeEEEccCC-CEEEEEeCCCeEEEEeCCC--------------------------------CCccEEEEE-c
Q 042146          138 LPAHSDPVTAIDFNRDG-TMIVTSSYDGLYRILDAST--------------------------------PNGKFILVG-T  183 (262)
Q Consensus       138 ~~~~~~~v~~~~~~~~~-~~l~~~~~dg~i~~~d~~~--------------------------------~~~~~l~~~-~  183 (262)
                      + .|...|.++.|..++ +.+.+-+...+..+|++..                                .+....+.+ +
T Consensus       208 i-N~~sSI~~igw~~~~ykrI~clTH~Etf~~~ele~~~~~~~~~~~~~~~~d~r~~~~~dY~I~~~~~~~~~~~~l~g~  286 (376)
T KOG1188|consen  208 I-NHGSSIHLIGWLSKKYKRIMCLTHMETFAIYELEDGSEETWLENPDVSADDLRKEDNCDYVINEHSPGDKDTCALAGT  286 (376)
T ss_pred             h-cccceeeeeeeecCCcceEEEEEccCceeEEEccCCChhhcccCccchhhhHHhhhhhhheeecccCCCcceEEEecc
Confidence            4 477889999999876 4588888999999999876                                223333333 3


Q ss_pred             CCCeEEEEecC---CC---ceeeEEeccCCceeEEEEEEecCCCeeEEccccceEEEEEcCCCCeEEEeeecCCCcEEEE
Q 042146          184 LDNTLRLWNYS---TR---KILKTYSGYTNSKYCISSTFSVTNGKYIVSHRDPVISVASHPAKNIIASGALDNDRTMKIW  257 (262)
Q Consensus       184 ~dg~i~i~d~~---~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~d~d~~i~iw  257 (262)
                      ..+...++-+.   ++   +.+..+.+                     +|..-|+++.|.-.+.++.|||  +||.+.+|
T Consensus       287 ~~n~~~~~~~~~~~s~~~~~~~a~l~g---------------------~~~eiVR~i~~~~~~~~l~TGG--EDG~l~~W  343 (376)
T KOG1188|consen  287 DSNKGTIFPLVDTSSGSLLTEPAILQG---------------------GHEEIVRDILFDVKNDVLYTGG--EDGLLQAW  343 (376)
T ss_pred             ccCceeEEEeeecccccccCccccccC---------------------CcHHHHHHHhhhcccceeeccC--CCceEEEE
Confidence            24445444333   12   22222222                     2778899999999999999999  99999999


Q ss_pred             ee
Q 042146          258 TQ  259 (262)
Q Consensus       258 ~~  259 (262)
                      +.
T Consensus       344 k~  345 (376)
T KOG1188|consen  344 KV  345 (376)
T ss_pred             ec
Confidence            84

>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]

Probab=99.89  E-value=6.2e-22  Score=154.69  Aligned_cols=223  Identities=18%  Similarity=0.273  Sum_probs=161.6

Q ss_pred             cceecccCcCceEEEEEccCCCeEEEecCCCeEEEeecCCCCCCCCCCCC-----------------------C------
Q 042146           15 LTQTLNGHLRAVSYVKFSHDGRLLTSSSAEKTLLTYSLSSISNFDSTPPS-----------------------P------   65 (262)
Q Consensus        15 ~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~-----------------------~------   65 (262)
                      .-..+.+|++.|+|+...|.|.+|++|+.||+|+||.+.++.........                       .      
T Consensus       392 ~~lvyrGHtg~Vr~iSvdp~G~wlasGsdDGtvriWEi~TgRcvr~~~~d~~I~~vaw~P~~~~~vLAvA~~~~~~ivnp  471 (733)
T KOG0650|consen  392 CALVYRGHTGLVRSISVDPSGEWLASGSDDGTVRIWEIATGRCVRTVQFDSEIRSVAWNPLSDLCVLAVAVGECVLIVNP  471 (733)
T ss_pred             eeeeEeccCCeEEEEEecCCcceeeecCCCCcEEEEEeecceEEEEEeecceeEEEEecCCCCceeEEEEecCceEEeCc
Confidence            45567899999999999999999999999999999998764321100000                       0      


Q ss_pred             --------------Cccc-------------c-C--------------Cccccccce------------------eEEEE
Q 042146           66 --------------LQKF-------------T-G--------------HEQGISDLA------------------TIRLW   85 (262)
Q Consensus        66 --------------~~~~-------------~-~--------------~~~~v~~~~------------------~i~v~   85 (262)
                                    ....             . .              |...+..+.                  .|.|.
T Consensus       472 ~~G~~~e~~~t~ell~~~~~~~~p~~~~~~W~~~~~~e~~~~v~~~I~~~k~i~~vtWHrkGDYlatV~~~~~~~~VliH  551 (733)
T KOG0650|consen  472 IFGDRLEVGPTKELLASAPNESEPDAAVVTWSRASLDELEKGVCIVIKHPKSIRQVTWHRKGDYLATVMPDSGNKSVLIH  551 (733)
T ss_pred             cccchhhhcchhhhhhcCCCccCCcccceeechhhhhhhccceEEEEecCCccceeeeecCCceEEEeccCCCcceEEEE
Confidence                          0000             0 0              000000000                  45555


Q ss_pred             ecCCCccceecccCCcceEEEEEeCCCCEEEeecCCCeEEEEECCCCeeeeeeecCCCCeeeEEEccCCCEEEEEeCCCe
Q 042146           86 DVPTATSLKTLIGHTNYVFCINFNPQSNRIVSDTFNETIRIWDIKTGKCLKVLPAHSDPVTAIDFNRDGTMIVTSSYDGL  165 (262)
Q Consensus        86 d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~  165 (262)
                      ++........++...+.|.++.|+|...+|++++. ..|++||+..+..+..+......|..++.+|.|..|+.++.|+.
T Consensus       552 QLSK~~sQ~PF~kskG~vq~v~FHPs~p~lfVaTq-~~vRiYdL~kqelvKkL~tg~kwiS~msihp~GDnli~gs~d~k  630 (733)
T KOG0650|consen  552 QLSKRKSQSPFRKSKGLVQRVKFHPSKPYLFVATQ-RSVRIYDLSKQELVKKLLTGSKWISSMSIHPNGDNLILGSYDKK  630 (733)
T ss_pred             ecccccccCchhhcCCceeEEEecCCCceEEEEec-cceEEEehhHHHHHHHHhcCCeeeeeeeecCCCCeEEEecCCCe
Confidence            55555544555556678999999999888888874 68999999988887777766778999999999999999999999


Q ss_pred             EEEEeCCC---------------------CCccEEEEEcCCCeEEEEecC------CCc---eeeEEeccCCceeEEEEE
Q 042146          166 YRILDAST---------------------PNGKFILVGTLDNTLRLWNYS------TRK---ILKTYSGYTNSKYCISST  215 (262)
Q Consensus       166 i~~~d~~~---------------------~~~~~l~~~~~dg~i~i~d~~------~~~---~~~~~~~~~~~~~~~~~~  215 (262)
                      +..||+.-                     +.-+++++|+.||++.|+.-.      ...   ++..+++|...       
T Consensus       631 ~~WfDldlsskPyk~lr~H~~avr~Va~H~ryPLfas~sdDgtv~Vfhg~VY~Dl~qnpliVPlK~L~gH~~~-------  703 (733)
T KOG0650|consen  631 MCWFDLDLSSKPYKTLRLHEKAVRSVAFHKRYPLFASGSDDGTVIVFHGMVYNDLLQNPLIVPLKRLRGHEKT-------  703 (733)
T ss_pred             eEEEEcccCcchhHHhhhhhhhhhhhhhccccceeeeecCCCcEEEEeeeeehhhhcCCceEeeeeccCceee-------
Confidence            99999875                     456789999999999998532      111   33444442211       


Q ss_pred             EecCCCeeEEccccceEEEEEcCCCCeEEEeeecCCCcEEEEe
Q 042146          216 FSVTNGKYIVSHRDPVISVASHPAKNIIASGALDNDRTMKIWT  258 (262)
Q Consensus       216 ~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~d~d~~i~iw~  258 (262)
                                 ....|..+.|||....|++++  .||+|++|.
T Consensus       704 -----------~~~gVLd~~wHP~qpWLfsAG--Ad~tirlfT  733 (733)
T KOG0650|consen  704 -----------NDLGVLDTIWHPRQPWLFSAG--ADGTIRLFT  733 (733)
T ss_pred             -----------cccceEeecccCCCceEEecC--CCceEEeeC
Confidence                       233489999999999999999  999999983

>KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only]

Probab=99.89  E-value=2.7e-22  Score=142.12  Aligned_cols=222  Identities=18%  Similarity=0.299  Sum_probs=159.1

Q ss_pred             cccceecccCcCceEEEEEccCCCeEEEecCCCeEEEeecCCCCCCCCCC---CCCCccccCCc-ccc---ccceeEEEE
Q 042146           13 YTLTQTLNGHLRAVSYVKFSHDGRLLTSSSAEKTLLTYSLSSISNFDSTP---PSPLQKFTGHE-QGI---SDLATIRLW   85 (262)
Q Consensus        13 ~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~---~~~~~~~~~~~-~~v---~~~~~i~v~   85 (262)
                      -.+...+++|.+.|+++.|-.+++ |.+|..-|.|++|++++........   ...+..+..-. ...   .-...+.+|
T Consensus         4 PdP~fvLRp~~~~v~s~~fqa~~r-L~sg~~~G~V~~w~lqt~r~~~~~r~~g~~~it~lq~~p~d~l~tqgRd~~L~lw   82 (323)
T KOG0322|consen    4 PDPFFVLRPHSSSVTSVLFQANER-LMSGLSVGIVKMWVLQTERDLPLIRLFGRLFITNLQSIPNDSLDTQGRDPLLILW   82 (323)
T ss_pred             CCCeeEeccccchheehhhccchh-hhcccccceEEEEEeecCccchhhhhhccceeeceeecCCcchhhcCCCceEEEE
Confidence            345677889999999999988775 9999999999999998754322111   11111111000 000   001134444


Q ss_pred             ecCCCc--------------------------------------c-----------ceec----ccCCcceEEEEEeC-C
Q 042146           86 DVPTAT--------------------------------------S-----------LKTL----IGHTNYVFCINFNP-Q  111 (262)
Q Consensus        86 d~~~~~--------------------------------------~-----------~~~~----~~~~~~v~~~~~~~-~  111 (262)
                      ++....                                      .           +...    .+..+.+.|..+.. +
T Consensus        83 ~ia~s~~i~i~Si~~nslgFCrfSl~~~~k~~eqll~yp~rgsde~h~~D~g~~tqv~i~dd~~~~Klgsvmc~~~~~~c  162 (323)
T KOG0322|consen   83 TIAYSAFISIHSIVVNSLGFCRFSLVKKPKNSEQLLEYPSRGSDETHKQDGGDTTQVQIADDSERSKLGSVMCQDKDHAC  162 (323)
T ss_pred             EccCcceEEEeeeeccccccccceeccCCCcchhheecCCcccchhhhhccCccceeEccCchhccccCceeeeeccccc
Confidence            432200                                      0           0000    01224566666433 3


Q ss_pred             CC--EEEeecCCCeEEEEECCCC----------eeeeeeecCCCCeeeEEEccCCCEEEEEeCCCeEEEEeCCC------
Q 042146          112 SN--RIVSDTFNETIRIWDIKTG----------KCLKVLPAHSDPVTAIDFNRDGTMIVTSSYDGLYRILDAST------  173 (262)
Q Consensus       112 ~~--~l~~~~~dg~i~vwd~~~~----------~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~d~~~------  173 (262)
                      +.  ++++|.++|.+.+||+.++          +.+.....|..+|.++.|.+.-+.=++++.+..+..|.+..      
T Consensus       163 ~s~~lllaGyEsghvv~wd~S~~~~~~~~~~~~kv~~~~ash~qpvlsldyas~~~rGisgga~dkl~~~Sl~~s~gslq  242 (323)
T KOG0322|consen  163 GSTFLLLAGYESGHVVIWDLSTGDKIIQLPQSSKVESPNASHKQPVLSLDYASSCDRGISGGADDKLVMYSLNHSTGSLQ  242 (323)
T ss_pred             cceEEEEEeccCCeEEEEEccCCceeeccccccccccchhhccCcceeeeechhhcCCcCCCccccceeeeeccccCccc
Confidence            33  4678999999999999987          34444567999999999998666667888888888988754      


Q ss_pred             ------------------CCccEEEEEcCCCeEEEEecCCCceeeEEeccCCceeEEEEEEecCCCeeEEccccceEEEE
Q 042146          174 ------------------PNGKFILVGTLDNTLRLWNYSTRKILKTYSGYTNSKYCISSTFSVTNGKYIVSHRDPVISVA  235 (262)
Q Consensus       174 ------------------~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~  235 (262)
                                        ||++.+++++.|+.||||+.++.+++..++.                      |.+.|++++
T Consensus       243 ~~~e~~lknpGv~gvrIRpD~KIlATAGWD~RiRVyswrtl~pLAVLky----------------------Hsagvn~vA  300 (323)
T KOG0322|consen  243 IRKEITLKNPGVSGVRIRPDGKILATAGWDHRIRVYSWRTLNPLAVLKY----------------------HSAGVNAVA  300 (323)
T ss_pred             ccceEEecCCCccceEEccCCcEEeecccCCcEEEEEeccCCchhhhhh----------------------hhcceeEEE
Confidence                              8999999999999999999999999999987                      999999999


Q ss_pred             EcCCCCeEEEeeecCCCcEEEEee
Q 042146          236 SHPAKNIIASGALDNDRTMKIWTQ  259 (262)
Q Consensus       236 ~~p~~~~l~~~~~d~d~~i~iw~~  259 (262)
                      |+|+..++|.+|  .|+.|.+|++
T Consensus       301 fspd~~lmAaas--kD~rISLWkL  322 (323)
T KOG0322|consen  301 FSPDCELMAAAS--KDARISLWKL  322 (323)
T ss_pred             eCCCCchhhhcc--CCceEEeeec
Confidence            999999999999  9999999986

>KOG1407 consensus WD40 repeat protein [Function unknown]

Probab=99.89  E-value=6.8e-22  Score=139.85  Aligned_cols=156  Identities=22%  Similarity=0.460  Sum_probs=136.7

Q ss_pred             eEEEEecCCCcccee--cccCCcceEEEEEeC-CCCEEEeecCCCeEEEEECCCCeeeeeeecCCCCeeeEEEccCCCEE
Q 042146           81 TIRLWDVPTATSLKT--LIGHTNYVFCINFNP-QSNRIVSDTFNETIRIWDIKTGKCLKVLPAHSDPVTAIDFNRDGTMI  157 (262)
Q Consensus        81 ~i~v~d~~~~~~~~~--~~~~~~~v~~~~~~~-~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l  157 (262)
                      .+.+|+++..+....  .++|.+.|..++|+| ...++++++.|.+|++||++++++...+... +.-.-+.|+|+|.++
T Consensus        43 tv~v~n~e~~r~~~~~~~~gh~~svdql~w~~~~~d~~atas~dk~ir~wd~r~~k~~~~i~~~-~eni~i~wsp~g~~~  121 (313)
T KOG1407|consen   43 TVSVWNLERDRFRKELVYRGHTDSVDQLCWDPKHPDLFATASGDKTIRIWDIRSGKCTARIETK-GENINITWSPDGEYI  121 (313)
T ss_pred             ceEEEEecchhhhhhhcccCCCcchhhheeCCCCCcceEEecCCceEEEEEeccCcEEEEeecc-CcceEEEEcCCCCEE
Confidence            799999987765543  568998999999998 7788999999999999999999999988654 444568899999999


Q ss_pred             EEEeCCCeEEEEeCCC-------------------CCccEEEEEcCCCeEEEEecCCCceeeEEeccCCceeEEEEEEec
Q 042146          158 VTSSYDGLYRILDAST-------------------PNGKFILVGTLDNTLRLWNYSTRKILKTYSGYTNSKYCISSTFSV  218 (262)
Q Consensus       158 ~~~~~dg~i~~~d~~~-------------------~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~  218 (262)
                      +++..|..|...|.+.                   .++++++..+..|+|.|......+++..++.              
T Consensus       122 ~~~~kdD~it~id~r~~~~~~~~~~~~e~ne~~w~~~nd~Fflt~GlG~v~ILsypsLkpv~si~A--------------  187 (313)
T KOG1407|consen  122 AVGNKDDRITFIDARTYKIVNEEQFKFEVNEISWNNSNDLFFLTNGLGCVEILSYPSLKPVQSIKA--------------  187 (313)
T ss_pred             EEecCcccEEEEEecccceeehhcccceeeeeeecCCCCEEEEecCCceEEEEecccccccccccc--------------
Confidence            9999999999999987                   4566777777789999999999999999988              


Q ss_pred             CCCeeEEccccceEEEEEcCCCCeEEEeeecCCCcEEEEeecc
Q 042146          219 TNGKYIVSHRDPVISVASHPAKNIIASGALDNDRTMKIWTQEK  261 (262)
Q Consensus       219 ~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~d~d~~i~iw~~~~  261 (262)
                              |.....|+.|+|+|++||+|+  .|..+.+||+++
T Consensus       188 --------H~snCicI~f~p~GryfA~Gs--ADAlvSLWD~~E  220 (313)
T KOG1407|consen  188 --------HPSNCICIEFDPDGRYFATGS--ADALVSLWDVDE  220 (313)
T ss_pred             --------CCcceEEEEECCCCceEeecc--ccceeeccChhH
Confidence                    888899999999999999999  899999999864

>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]

Probab=99.89  E-value=9.9e-23  Score=143.37  Aligned_cols=177  Identities=25%  Similarity=0.398  Sum_probs=145.0

Q ss_pred             ccccceecccCcCceEEEEEccCCCeEEEecCCCeEEEeecCCCCCCCCCCCCCCccccCCcccc---------------
Q 042146           12 PYTLTQTLNGHLRAVSYVKFSHDGRLLTSSSAEKTLLTYSLSSISNFDSTPPSPLQKFTGHEQGI---------------   76 (262)
Q Consensus        12 ~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v---------------   76 (262)
                      +...++.+ .|..-|.+++|+.|.++|++|+.++.+||+|++....       +..++.+|..++               
T Consensus        90 tgdelhsf-~hkhivk~~af~~ds~~lltgg~ekllrvfdln~p~A-------pp~E~~ghtg~Ir~v~wc~eD~~iLSS  161 (334)
T KOG0278|consen   90 TGDELHSF-EHKHIVKAVAFSQDSNYLLTGGQEKLLRVFDLNRPKA-------PPKEISGHTGGIRTVLWCHEDKCILSS  161 (334)
T ss_pred             hhhhhhhh-hhhheeeeEEecccchhhhccchHHHhhhhhccCCCC-------CchhhcCCCCcceeEEEeccCceEEee
Confidence            45566777 4899999999999999999999999999999876322       122233333332               


Q ss_pred             ccceeEEEEecCCCccceecccCCcceEEEEEeCCCCEEEeecCCCeEEEEECCCCeeeeeeecCCCCeeeEEEccCCCE
Q 042146           77 SDLATIRLWDVPTATSLKTLIGHTNYVFCINFNPQSNRIVSDTFNETIRIWDIKTGKCLKVLPAHSDPVTAIDFNRDGTM  156 (262)
Q Consensus        77 ~~~~~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~  156 (262)
                      ....+|++||.+++..++++. .+.+|+++.++++|+++.++. .+.|.+||..+..++..++. ...|.+...+|+...
T Consensus       162 add~tVRLWD~rTgt~v~sL~-~~s~VtSlEvs~dG~ilTia~-gssV~Fwdaksf~~lKs~k~-P~nV~SASL~P~k~~  238 (334)
T KOG0278|consen  162 ADDKTVRLWDHRTGTEVQSLE-FNSPVTSLEVSQDGRILTIAY-GSSVKFWDAKSFGLLKSYKM-PCNVESASLHPKKEF  238 (334)
T ss_pred             ccCCceEEEEeccCcEEEEEe-cCCCCcceeeccCCCEEEEec-CceeEEeccccccceeeccC-ccccccccccCCCce
Confidence            234489999999999998886 567899999999999887765 57899999999888887753 567899999999999


Q ss_pred             EEEEeCCCeEEEEeCCC---------------------CCccEEEEEcCCCeEEEEecCCCcee
Q 042146          157 IVTSSYDGLYRILDAST---------------------PNGKFILVGTLDNTLRLWNYSTRKIL  199 (262)
Q Consensus       157 l~~~~~dg~i~~~d~~~---------------------~~~~~l~~~~~dg~i~i~d~~~~~~~  199 (262)
                      +++|+.|..++.||..+                     |+|...++|++||+|++|....++..
T Consensus       239 fVaGged~~~~kfDy~TgeEi~~~nkgh~gpVhcVrFSPdGE~yAsGSEDGTirlWQt~~~~~~  302 (334)
T KOG0278|consen  239 FVAGGEDFKVYKFDYNTGEEIGSYNKGHFGPVHCVRFSPDGELYASGSEDGTIRLWQTTPGKTY  302 (334)
T ss_pred             EEecCcceEEEEEeccCCceeeecccCCCCceEEEEECCCCceeeccCCCceEEEEEecCCCch
Confidence            99999999999999876                     89999999999999999998766543

>KOG0293 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.89  E-value=2e-22  Score=150.94  Aligned_cols=172  Identities=28%  Similarity=0.455  Sum_probs=128.0

Q ss_pred             CCCCceeeec-----ccccceecccCcCceEEEEEccCCCeEEEecCCCeEEEeecCCCCCCCCCCCC---CC-------
Q 042146            2 SSDRSLESFR-----PYTLTQTLNGHLRAVSYVKFSHDGRLLTSSSAEKTLLTYSLSSISNFDSTPPS---PL-------   66 (262)
Q Consensus         2 s~d~~i~~~~-----~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~---~~-------   66 (262)
                      |.|.+.-.|.     .+++.+++.+|..+|..+.||||.++|++++.|..+.+||..++......+..   ..       
T Consensus       243 SkD~Taiiw~v~~d~~~kl~~tlvgh~~~V~yi~wSPDdryLlaCg~~e~~~lwDv~tgd~~~~y~~~~~~S~~sc~W~p  322 (519)
T KOG0293|consen  243 SKDSTAIIWIVVYDVHFKLKKTLVGHSQPVSYIMWSPDDRYLLACGFDEVLSLWDVDTGDLRHLYPSGLGFSVSSCAWCP  322 (519)
T ss_pred             cCCceEEEEEEecCcceeeeeeeecccCceEEEEECCCCCeEEecCchHheeeccCCcchhhhhcccCcCCCcceeEEcc
Confidence            3455555553     46678999999999999999999999999999999999999875432211111   00       


Q ss_pred             ---ccccCC----------cc------------ccccce-----------------------------------------
Q 042146           67 ---QKFTGH----------EQ------------GISDLA-----------------------------------------   80 (262)
Q Consensus        67 ---~~~~~~----------~~------------~v~~~~-----------------------------------------   80 (262)
                         ....+.          .+            .+..++                                         
T Consensus       323 Dg~~~V~Gs~dr~i~~wdlDgn~~~~W~gvr~~~v~dlait~Dgk~vl~v~~d~~i~l~~~e~~~dr~lise~~~its~~  402 (519)
T KOG0293|consen  323 DGFRFVTGSPDRTIIMWDLDGNILGNWEGVRDPKVHDLAITYDGKYVLLVTVDKKIRLYNREARVDRGLISEEQPITSFS  402 (519)
T ss_pred             CCceeEecCCCCcEEEecCCcchhhcccccccceeEEEEEcCCCcEEEEEecccceeeechhhhhhhccccccCceeEEE
Confidence               000000          00            000110                                         


Q ss_pred             ---------------eEEEEecCCCccceecccCCcc--eEEEEEeC-CCCEEEeecCCCeEEEEECCCCeeeeeeecCC
Q 042146           81 ---------------TIRLWDVPTATSLKTLIGHTNY--VFCINFNP-QSNRIVSDTFNETIRIWDIKTGKCLKVLPAHS  142 (262)
Q Consensus        81 ---------------~i~v~d~~~~~~~~~~~~~~~~--v~~~~~~~-~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~  142 (262)
                                     .+++||++....+..+.+|+..  +-.-+|-- +..++++||+|+.|+||+.++++++.++.+|.
T Consensus       403 iS~d~k~~LvnL~~qei~LWDl~e~~lv~kY~Ghkq~~fiIrSCFgg~~~~fiaSGSED~kvyIWhr~sgkll~~LsGHs  482 (519)
T KOG0293|consen  403 ISKDGKLALVNLQDQEIHLWDLEENKLVRKYFGHKQGHFIIRSCFGGGNDKFIASGSEDSKVYIWHRISGKLLAVLSGHS  482 (519)
T ss_pred             EcCCCcEEEEEcccCeeEEeecchhhHHHHhhcccccceEEEeccCCCCcceEEecCCCceEEEEEccCCceeEeecCCc
Confidence                           8899999988888899998854  33334433 56899999999999999999999999999999


Q ss_pred             CCeeeEEEcc-CCCEEEEEeCCCeEEEEeCCC
Q 042146          143 DPVTAIDFNR-DGTMIVTSSYDGLYRILDAST  173 (262)
Q Consensus       143 ~~v~~~~~~~-~~~~l~~~~~dg~i~~~d~~~  173 (262)
                      ..|++++|+| +..+||+|+.||+|++|....
T Consensus       483 ~~vNcVswNP~~p~m~ASasDDgtIRIWg~~~  514 (519)
T KOG0293|consen  483 KTVNCVSWNPADPEMFASASDDGTIRIWGPSD  514 (519)
T ss_pred             ceeeEEecCCCCHHHhhccCCCCeEEEecCCc
Confidence            9999999999 667888888888888887653

>KOG1408 consensus WD40 repeat protein [Function unknown]

Probab=99.89  E-value=2.4e-21  Score=154.59  Aligned_cols=156  Identities=17%  Similarity=0.359  Sum_probs=123.3

Q ss_pred             EEEEEeCCCCEEEeecCCCeEEEEECCCCee---eeeeecCCCCeeeEEEcc-C----------CCEEEEEeCCCeEEEE
Q 042146          104 FCINFNPQSNRIVSDTFNETIRIWDIKTGKC---LKVLPAHSDPVTAIDFNR-D----------GTMIVTSSYDGLYRIL  169 (262)
Q Consensus       104 ~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~---~~~~~~~~~~v~~~~~~~-~----------~~~l~~~~~dg~i~~~  169 (262)
                      -++.|+|....|.+...|..++|||++.-+.   .+.+-.|...|+++.--| +          ...|++|+.|++|++|
T Consensus       328 IA~~Fdet~~klscVYndhSlYvWDvrD~~kvgk~~s~lyHS~ciW~Ve~~p~nv~~~~~aclp~~cF~TCSsD~TIRlW  407 (1080)
T KOG1408|consen  328 IACQFDETTDKLSCVYNDHSLYVWDVRDVNKVGKCSSMLYHSACIWDVENLPCNVHSPTAACLPRGCFTTCSSDGTIRLW  407 (1080)
T ss_pred             eEEEecCCCceEEEEEcCceEEEEeccccccccceeeeeeccceeeeeccccccccCcccccCCccceeEecCCCcEEEe
Confidence            4567888888999999999999999986432   233445888888776655 1          2358999999999999


Q ss_pred             eCCC---------------------------------------------------------CCccEEEEEcCCCeEEEEe
Q 042146          170 DAST---------------------------------------------------------PNGKFILVGTLDNTLRLWN  192 (262)
Q Consensus       170 d~~~---------------------------------------------------------~~~~~l~~~~~dg~i~i~d  192 (262)
                      |+..                                                         |++++|++|..-|.++||+
T Consensus       408 ~l~~ctnn~vyrRNils~~l~ki~y~d~~~q~~~d~~~~~fdka~~s~~d~r~G~R~~~vSp~gqhLAsGDr~GnlrVy~  487 (1080)
T KOG1408|consen  408 DLAFCTNNQVYRRNILSANLSKIPYEDSTQQIMHDASAGIFDKALVSTCDSRFGFRALAVSPDGQHLASGDRGGNLRVYD  487 (1080)
T ss_pred             ecccccccceeecccchhhhhcCccccCchhhhhhccCCcccccchhhcCcccceEEEEECCCcceecccCccCceEEEE
Confidence            9765                                                         8999999999999999999


Q ss_pred             cCCCceeeEEeccCCceeEEEEEEecCCCeeEEc----------------------------------------------
Q 042146          193 YSTRKILKTYSGYTNSKYCISSTFSVTNGKYIVS----------------------------------------------  226 (262)
Q Consensus       193 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------------------------------------------  226 (262)
                      +...+....+..|+.++.|+...+.....++++.                                              
T Consensus       488 Lq~l~~~~~~eAHesEilcLeyS~p~~~~kLLASasrdRlIHV~Dv~rny~l~qtld~HSssITsvKFa~~gln~~Misc  567 (1080)
T KOG1408|consen  488 LQELEYTCFMEAHESEILCLEYSFPVLTNKLLASASRDRLIHVYDVKRNYDLVQTLDGHSSSITSVKFACNGLNRKMISC  567 (1080)
T ss_pred             ehhhhhhhheecccceeEEEeecCchhhhHhhhhccCCceEEEEecccccchhhhhcccccceeEEEEeecCCceEEEec
Confidence            9988888888888888888876655544444333                                              


Q ss_pred             ---------------------------cccceEEEEEcCCCCeEEEeeecCCCcEEEEeecc
Q 042146          227 ---------------------------HRDPVISVASHPAKNIIASGALDNDRTMKIWTQEK  261 (262)
Q Consensus       227 ---------------------------~~~~v~~~~~~p~~~~l~~~~~d~d~~i~iw~~~~  261 (262)
                                                 ....+..|+..|..+++++++  .|..|+||++++
T Consensus       568 GADksimFr~~qk~~~g~~f~r~t~t~~ktTlYDm~Vdp~~k~v~t~c--QDrnirif~i~s  627 (1080)
T KOG1408|consen  568 GADKSIMFRVNQKASSGRLFPRHTQTLSKTTLYDMAVDPTSKLVVTVC--QDRNIRIFDIES  627 (1080)
T ss_pred             cCchhhheehhccccCceeccccccccccceEEEeeeCCCcceEEEEe--cccceEEEeccc
Confidence                                       234577888888888889998  889999998864

>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]

Probab=99.89  E-value=3.8e-22  Score=157.22  Aligned_cols=128  Identities=20%  Similarity=0.284  Sum_probs=95.7

Q ss_pred             cceecccCcCceEEEEEcc-CCCeEEEecCCCeEEEeecCCCCCCCCCCC--------CCCccccCCcc--cc---ccce
Q 042146           15 LTQTLNGHLRAVSYVKFSH-DGRLLTSSSAEKTLLTYSLSSISNFDSTPP--------SPLQKFTGHEQ--GI---SDLA   80 (262)
Q Consensus        15 ~~~~~~~h~~~v~~~~~~~-~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~--------~~~~~~~~~~~--~v---~~~~   80 (262)
                      -+..+.+|...|+.+.|+| +..+||++|.|..|+||.+..........+        .....+..|..  ++   ..-+
T Consensus        71 ~i~~l~~H~d~VtDl~FspF~D~LLAT~S~D~~VKiW~lp~g~~q~LSape~~~g~~~~~vE~l~fHpTaDgil~s~a~g  150 (1012)
T KOG1445|consen   71 DIGILAAHGDQVTDLGFSPFADELLATCSRDEPVKIWKLPRGHSQKLSAPEIDVGGGNVIVECLRFHPTADGILASGAHG  150 (1012)
T ss_pred             ccceeecccceeeccCccccchhhhhcccCCCeeEEEecCCCcccccCCcceeecCCceEEEEeecccCcCceEEeccCc
Confidence            4556789999999999999 456899999999999999874322111111        11122333322  22   1222


Q ss_pred             eEEEEecCCCccceecccCCcceEEEEEeCCCCEEEeecCCCeEEEEECCC-CeeeeeeecCC
Q 042146           81 TIRLWDVPTATSLKTLIGHTNYVFCINFNPQSNRIVSDTFNETIRIWDIKT-GKCLKVLPAHS  142 (262)
Q Consensus        81 ~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~-~~~~~~~~~~~  142 (262)
                      .+++||+.+++.+..+.+|...|.++.|+.||.++++.+.|..|+|||.+. +++++...+|.
T Consensus       151 ~v~i~D~stqk~~~el~~h~d~vQSa~WseDG~llatscKdkqirifDPRa~~~piQ~te~H~  213 (1012)
T KOG1445|consen  151 SVYITDISTQKTAVELSGHTDKVQSADWSEDGKLLATSCKDKQIRIFDPRASMEPIQTTEGHG  213 (1012)
T ss_pred             eEEEEEcccCceeecccCCchhhhccccccCCceEeeecCCcceEEeCCccCCCccccccccc
Confidence            899999999999999999999999999999999999999999999999984 34555555554

>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]

Probab=99.89  E-value=4.2e-21  Score=139.82  Aligned_cols=145  Identities=21%  Similarity=0.437  Sum_probs=120.7

Q ss_pred             eEEEEec-CCCccc--eec-----ccCCcceEEEEEeC-CCCEEEeecCCCeEEEEECCCCeeeeeeecCCCCeeeEEEc
Q 042146           81 TIRLWDV-PTATSL--KTL-----IGHTNYVFCINFNP-QSNRIVSDTFNETIRIWDIKTGKCLKVLPAHSDPVTAIDFN  151 (262)
Q Consensus        81 ~i~v~d~-~~~~~~--~~~-----~~~~~~v~~~~~~~-~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~  151 (262)
                      .|+++|+ +.|+..  ...     .+..+.|.|++|+| +.+.++.|+....+-||.-..+.++..+.+|.+.|+.+.|.
T Consensus       180 cirvFdt~RpGr~c~vy~t~~~~k~gq~giisc~a~sP~~~~~~a~gsY~q~~giy~~~~~~pl~llggh~gGvThL~~~  259 (406)
T KOG2919|consen  180 CIRVFDTSRPGRDCPVYTTVTKGKFGQKGIISCFAFSPMDSKTLAVGSYGQRVGIYNDDGRRPLQLLGGHGGGVTHLQWC  259 (406)
T ss_pred             eEEEeeccCCCCCCcchhhhhcccccccceeeeeeccCCCCcceeeecccceeeeEecCCCCceeeecccCCCeeeEEec
Confidence            6777777 333321  111     23367789999999 56688999988899898888888999999999999999999


Q ss_pred             cCCCEEEEEe-CCCeEEEEeCCC------------------------CCccEEEEEcCCCeEEEEecCC-CceeeEEecc
Q 042146          152 RDGTMIVTSS-YDGLYRILDAST------------------------PNGKFILVGTLDNTLRLWNYST-RKILKTYSGY  205 (262)
Q Consensus       152 ~~~~~l~~~~-~dg~i~~~d~~~------------------------~~~~~l~~~~~dg~i~i~d~~~-~~~~~~~~~~  205 (262)
                      ++|+.|++|+ .|..|..||+|.                        |.+++|++|+.||.|++||+.+ |..+..+.. 
T Consensus       260 edGn~lfsGaRk~dkIl~WDiR~~~~pv~~L~rhv~~TNQRI~FDld~~~~~LasG~tdG~V~vwdlk~~gn~~sv~~~-  338 (406)
T KOG2919|consen  260 EDGNKLFSGARKDDKILCWDIRYSRDPVYALERHVGDTNQRILFDLDPKGEILASGDTDGSVRVWDLKDLGNEVSVTGN-  338 (406)
T ss_pred             cCcCeecccccCCCeEEEEeehhccchhhhhhhhccCccceEEEecCCCCceeeccCCCccEEEEecCCCCCccccccc-
Confidence            9999999998 478999999987                        8899999999999999999987 665665554 


Q ss_pred             CCceeEEEEEEecCCCeeEEccccceEEEEEcCCCCeEEEee
Q 042146          206 TNSKYCISSTFSVTNGKYIVSHRDPVISVASHPAKNIIASGA  247 (262)
Q Consensus       206 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~  247 (262)
                                           +...++.++++|--+++||++
T Consensus       339 ---------------------~sd~vNgvslnP~mpilatss  359 (406)
T KOG2919|consen  339 ---------------------YSDTVNGVSLNPIMPILATSS  359 (406)
T ss_pred             ---------------------ccccccceecCcccceeeecc
Confidence                                 888899999999999999987

>KOG0270 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.89  E-value=1.7e-21  Score=147.00  Aligned_cols=184  Identities=17%  Similarity=0.304  Sum_probs=143.0

Q ss_pred             cCcCceEEEEEccC-CCeEEEecCCCeEEEeecCCCCCCCCCCCCCCccccCCccccccceeEEEEecCCCccceecccC
Q 042146           21 GHLRAVSYVKFSHD-GRLLTSSSAEKTLLTYSLSSISNFDSTPPSPLQKFTGHEQGISDLATIRLWDVPTATSLKTLIGH   99 (262)
Q Consensus        21 ~h~~~v~~~~~~~~-~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~i~v~d~~~~~~~~~~~~~   99 (262)
                      +|+..|.+++|+.. .+.||+||.|.+|++|                                   |+.++++..++..|
T Consensus       241 gHTdavl~Ls~n~~~~nVLaSgsaD~TV~lW-----------------------------------D~~~g~p~~s~~~~  285 (463)
T KOG0270|consen  241 GHTDAVLALSWNRNFRNVLASGSADKTVKLW-----------------------------------DVDTGKPKSSITHH  285 (463)
T ss_pred             cchHHHHHHHhccccceeEEecCCCceEEEE-----------------------------------EcCCCCcceehhhc
Confidence            69999999999886 5589999999998887                                   55678888899999


Q ss_pred             CcceEEEEEeC-CCCEEEeecCCCeEEEEECCCCeeeeeeecCCCCeeeEEEccCC-CEEEEEeCCCeEEEEeCCC----
Q 042146          100 TNYVFCINFNP-QSNRIVSDTFNETIRIWDIKTGKCLKVLPAHSDPVTAIDFNRDG-TMIVTSSYDGLYRILDAST----  173 (262)
Q Consensus       100 ~~~v~~~~~~~-~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~dg~i~~~d~~~----  173 (262)
                      ...|.+++|+| .+.+|++|+.|++|.+.|.|........-...+.|-.++|.|.. ..++++..||+++-+|+|.    
T Consensus       286 ~k~Vq~l~wh~~~p~~LLsGs~D~~V~l~D~R~~~~s~~~wk~~g~VEkv~w~~~se~~f~~~tddG~v~~~D~R~~~~~  365 (463)
T KOG0270|consen  286 GKKVQTLEWHPYEPSVLLSGSYDGTVALKDCRDPSNSGKEWKFDGEVEKVAWDPHSENSFFVSTDDGTVYYFDIRNPGKP  365 (463)
T ss_pred             CCceeEEEecCCCceEEEeccccceEEeeeccCccccCceEEeccceEEEEecCCCceeEEEecCCceEEeeecCCCCCc
Confidence            99999999999 67789999999999999999533222222346789999999954 5788888999999999998    


Q ss_pred             ------------------CCccEEEEEcCCCeEEEEecCCCceeeEEeccCCceeEEEEEEecCCCeeEEccccceEEEE
Q 042146          174 ------------------PNGKFILVGTLDNTLRLWNYSTRKILKTYSGYTNSKYCISSTFSVTNGKYIVSHRDPVISVA  235 (262)
Q Consensus       174 ------------------~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~  235 (262)
                                        ....++++++.|+.|++|++....+-.... +.-                   .-++..|++
T Consensus       366 vwt~~AHd~~ISgl~~n~~~p~~l~t~s~d~~Vklw~~~~~~~~~v~~-~~~-------------------~~~rl~c~~  425 (463)
T KOG0270|consen  366 VWTLKAHDDEISGLSVNIQTPGLLSTASTDKVVKLWKFDVDSPKSVKE-HSF-------------------KLGRLHCFA  425 (463)
T ss_pred             eeEEEeccCCcceEEecCCCCcceeeccccceEEEEeecCCCCccccc-ccc-------------------cccceeecc
Confidence                              345789999999999999987544322111 100                   123466788


Q ss_pred             EcCCCC-eEEEeeecCCCcEEEEeecc
Q 042146          236 SHPAKN-IIASGALDNDRTMKIWTQEK  261 (262)
Q Consensus       236 ~~p~~~-~l~~~~~d~d~~i~iw~~~~  261 (262)
                      +.|+-. .++.||  ..+.++|||+..
T Consensus       426 ~~~~~a~~la~GG--~k~~~~vwd~~~  450 (463)
T KOG0270|consen  426 LDPDVAFTLAFGG--EKAVLRVWDIFT  450 (463)
T ss_pred             cCCCcceEEEecC--ccceEEEeeccc
Confidence            888765 466666  778899999853

>KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription]

Probab=99.89  E-value=4.3e-21  Score=152.19  Aligned_cols=145  Identities=23%  Similarity=0.469  Sum_probs=121.5

Q ss_pred             eecccCCcceEEEEEeCCCCEEEeecCCC-----eEEEEECCCCeeeeeeecCCCCeeeEEEccCCCEEEEEeCCCeEEE
Q 042146           94 KTLIGHTNYVFCINFNPQSNRIVSDTFNE-----TIRIWDIKTGKCLKVLPAHSDPVTAIDFNRDGTMIVTSSYDGLYRI  168 (262)
Q Consensus        94 ~~~~~~~~~v~~~~~~~~~~~l~~~~~dg-----~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~  168 (262)
                      +.+.+|...|.+++.+|+++++|+++...     .|++|+..+-..+..+..|.-.|+.++||||+++|++.+.|+++.+
T Consensus       519 ~KLYGHGyEv~~l~~s~~gnliASaCKS~~~ehAvI~lw~t~~W~~~~~L~~HsLTVT~l~FSpdg~~LLsvsRDRt~sl  598 (764)
T KOG1063|consen  519 HKLYGHGYEVYALAISPTGNLIASACKSSLKEHAVIRLWNTANWLQVQELEGHSLTVTRLAFSPDGRYLLSVSRDRTVSL  598 (764)
T ss_pred             HHhccCceeEEEEEecCCCCEEeehhhhCCccceEEEEEeccchhhhheecccceEEEEEEECCCCcEEEEeecCceEEe
Confidence            34568999999999999999999988654     4999999888888889999999999999999999999999999999


Q ss_pred             EeCCC------------------------CCccEEEEEcCCCeEEEEecCCC--ceeeEEeccCCceeEEEEEEecCCCe
Q 042146          169 LDAST------------------------PNGKFILVGTLDNTLRLWNYSTR--KILKTYSGYTNSKYCISSTFSVTNGK  222 (262)
Q Consensus       169 ~d~~~------------------------~~~~~l~~~~~dg~i~i~d~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~  222 (262)
                      |....                        |++.++++++.|..|++|.....  +.+..+..                  
T Consensus       599 ~~~~~~~~~e~~fa~~k~HtRIIWdcsW~pde~~FaTaSRDK~VkVW~~~~~~d~~i~~~a~------------------  660 (764)
T KOG1063|consen  599 YEVQEDIKDEFRFACLKAHTRIIWDCSWSPDEKYFATASRDKKVKVWEEPDLRDKYISRFAC------------------  660 (764)
T ss_pred             eeeecccchhhhhccccccceEEEEcccCcccceeEEecCCceEEEEeccCchhhhhhhhch------------------
Confidence            98644                        89999999999999999998876  44443311                  


Q ss_pred             eEEccccceEEEEEcCC----C-CeEEEeeecCCCcEEEEeec
Q 042146          223 YIVSHRDPVISVASHPA----K-NIIASGALDNDRTMKIWTQE  260 (262)
Q Consensus       223 ~~~~~~~~v~~~~~~p~----~-~~l~~~~~d~d~~i~iw~~~  260 (262)
                        ..+..+|+.+++.|-    . ..++.|-  +.|.|.+|+..
T Consensus       661 --~~~~~aVTAv~~~~~~~~e~~~~vavGl--e~GeI~l~~~~  699 (764)
T KOG1063|consen  661 --LKFSLAVTAVAYLPVDHNEKGDVVAVGL--EKGEIVLWRRK  699 (764)
T ss_pred             --hccCCceeeEEeeccccccccceEEEEe--cccEEEEEecc
Confidence              117889999999773    2 2556665  89999999965

>KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair]

Probab=99.88  E-value=1.5e-21  Score=145.82  Aligned_cols=139  Identities=25%  Similarity=0.446  Sum_probs=111.4

Q ss_pred             cceecccCcCceEEEEEccCCCeEEEecCCCeEEEeecCCCCCCCCCCCCCCccccCCccccccceeEEEEecCCCccce
Q 042146           15 LTQTLNGHLRAVSYVKFSHDGRLLTSSSAEKTLLTYSLSSISNFDSTPPSPLQKFTGHEQGISDLATIRLWDVPTATSLK   94 (262)
Q Consensus        15 ~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~i~v~d~~~~~~~~   94 (262)
                      ....|..|..+|+++.|+|+|+.||+|+.+|.|.+|............       ....            +-+.....+
T Consensus        57 y~s~Ls~H~~aVN~vRf~p~gelLASg~D~g~v~lWk~~~~~~~~~d~-------e~~~------------~ke~w~v~k  117 (434)
T KOG1009|consen   57 YLSSLSRHTRAVNVVRFSPDGELLASGGDGGEVFLWKQGDVRIFDADT-------EADL------------NKEKWVVKK  117 (434)
T ss_pred             EeecccCCcceeEEEEEcCCcCeeeecCCCceEEEEEecCcCCccccc-------hhhh------------CccceEEEE
Confidence            556788999999999999999999999999999999765311110000       0000            011233445


Q ss_pred             ecccCCcceEEEEEeCCCCEEEeecCCCeEEEEECCCCeeeeeeecCCCCeeeEEEccCCCEEEEEeCCCeEEEEeCC
Q 042146           95 TLIGHTNYVFCINFNPQSNRIVSDTFNETIRIWDIKTGKCLKVLPAHSDPVTAIDFNRDGTMIVTSSYDGLYRILDAS  172 (262)
Q Consensus        95 ~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~d~~  172 (262)
                      .+.+|...|..++|+|++.++++++-|..+++||+..++....+..|...+..++|.|-++++++-+.|...+.+.+.
T Consensus       118 ~lr~h~~diydL~Ws~d~~~l~s~s~dns~~l~Dv~~G~l~~~~~dh~~yvqgvawDpl~qyv~s~s~dr~~~~~~~~  195 (434)
T KOG1009|consen  118 VLRGHRDDIYDLAWSPDSNFLVSGSVDNSVRLWDVHAGQLLAILDDHEHYVQGVAWDPLNQYVASKSSDRHPEGFSAK  195 (434)
T ss_pred             EecccccchhhhhccCCCceeeeeeccceEEEEEeccceeEeeccccccccceeecchhhhhhhhhccCcccceeeee
Confidence            667799999999999999999999999999999999999999999999999999999999999999988866666544

>KOG1274 consensus WD40 repeat protein [General function prediction only]

Probab=99.88  E-value=1.3e-20  Score=153.83  Aligned_cols=218  Identities=22%  Similarity=0.353  Sum_probs=163.8

Q ss_pred             CCCCceeeeccccc---ceecccCcCceEEEEEccCCCeEEEecCCCeEEEeecCCCCCCCCC----CCCCCccccCCcc
Q 042146            2 SSDRSLESFRPYTL---TQTLNGHLRAVSYVKFSHDGRLLTSSSAEKTLLTYSLSSISNFDST----PPSPLQKFTGHEQ   74 (262)
Q Consensus         2 s~d~~i~~~~~~~~---~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~----~~~~~~~~~~~~~   74 (262)
                      ++||.|+.|+....   -.++..|...|.+++..  +.+|++|+.+++|.+|.+.+.......    .+.....+.+...
T Consensus        32 gsdg~ir~~~~~sd~e~P~ti~~~g~~v~~ia~~--s~~f~~~s~~~tv~~y~fps~~~~~iL~Rftlp~r~~~v~g~g~  109 (933)
T KOG1274|consen   32 GSDGDIRKWKTNSDEEEPETIDISGELVSSIACY--SNHFLTGSEQNTVLRYKFPSGEEDTILARFTLPIRDLAVSGSGK  109 (933)
T ss_pred             cCCCceEEeecCCcccCCchhhccCceeEEEeec--ccceEEeeccceEEEeeCCCCCccceeeeeeccceEEEEecCCc
Confidence            46888888874432   34444477888887764  458999999999999988764332111    1111111222221


Q ss_pred             cc---ccceeEEEEecCCCccceecccCCcceEEEEEeCCCCEEEeecCCCeEEEEECCCCeeeeeeec--------CCC
Q 042146           75 GI---SDLATIRLWDVPTATSLKTLIGHTNYVFCINFNPQSNRIVSDTFNETIRIWDIKTGKCLKVLPA--------HSD  143 (262)
Q Consensus        75 ~v---~~~~~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~--------~~~  143 (262)
                      .+   .....|++.+..+......+++|.++|.++.++|.+++||+.+-||.|++||+.++.+...+.+        ...
T Consensus       110 ~iaagsdD~~vK~~~~~D~s~~~~lrgh~apVl~l~~~p~~~fLAvss~dG~v~iw~~~~~~~~~tl~~v~k~n~~~~s~  189 (933)
T KOG1274|consen  110 MIAAGSDDTAVKLLNLDDSSQEKVLRGHDAPVLQLSYDPKGNFLAVSSCDGKVQIWDLQDGILSKTLTGVDKDNEFILSR  189 (933)
T ss_pred             EEEeecCceeEEEEeccccchheeecccCCceeeeeEcCCCCEEEEEecCceEEEEEcccchhhhhcccCCccccccccc
Confidence            11   2222799999999999999999999999999999999999999999999999998876665532        134


Q ss_pred             CeeeEEEccCCCEEEEEeCCCeEEEEeCCC----------------------CCccEEEEEcCCCeEEEEecCCCceeeE
Q 042146          144 PVTAIDFNRDGTMIVTSSYDGLYRILDAST----------------------PNGKFILVGTLDNTLRLWNYSTRKILKT  201 (262)
Q Consensus       144 ~v~~~~~~~~~~~l~~~~~dg~i~~~d~~~----------------------~~~~~l~~~~~dg~i~i~d~~~~~~~~~  201 (262)
                      .+..++|+|++..|+..+.|+.|++|+...                      |+|.|||+++.+|.|.|||..+-..   
T Consensus       190 i~~~~aW~Pk~g~la~~~~d~~Vkvy~r~~we~~f~Lr~~~~ss~~~~~~wsPnG~YiAAs~~~g~I~vWnv~t~~~---  266 (933)
T KOG1274|consen  190 ICTRLAWHPKGGTLAVPPVDNTVKVYSRKGWELQFKLRDKLSSSKFSDLQWSPNGKYIAASTLDGQILVWNVDTHER---  266 (933)
T ss_pred             eeeeeeecCCCCeEEeeccCCeEEEEccCCceeheeecccccccceEEEEEcCCCcEEeeeccCCcEEEEecccchh---
Confidence            578899999999999999999999999776                      8999999999999999999987211   


Q ss_pred             EeccCCceeEEEEEEecCCCeeEEccccceEEEEEcCCCCeEEEee
Q 042146          202 YSGYTNSKYCISSTFSVTNGKYIVSHRDPVISVASHPAKNIIASGA  247 (262)
Q Consensus       202 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~  247 (262)
                         |.                    ....|.+++|.|+.+.+-.-.
T Consensus       267 ---~~--------------------~~~~Vc~~aw~p~~n~it~~~  289 (933)
T KOG1274|consen  267 ---HE--------------------FKRAVCCEAWKPNANAITLIT  289 (933)
T ss_pred             ---cc--------------------ccceeEEEecCCCCCeeEEEe
Confidence               11                    446788999999887654433

>KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription]

Probab=99.88  E-value=3.6e-21  Score=152.58  Aligned_cols=206  Identities=20%  Similarity=0.323  Sum_probs=156.9

Q ss_pred             cccceecccCcCceEEEEEccCCCeEEEecCCCeEEEeecCCCCCCCCCCCCCCccccCCccccccceeEEEEecCCCcc
Q 042146           13 YTLTQTLNGHLRAVSYVKFSHDGRLLTSSSAEKTLLTYSLSSISNFDSTPPSPLQKFTGHEQGISDLATIRLWDVPTATS   92 (262)
Q Consensus        13 ~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~i~v~d~~~~~~   92 (262)
                      +..++.+-||...|.|++.+|+++++|+++......-                              +.|++|+..+...
T Consensus       515 wPEv~KLYGHGyEv~~l~~s~~gnliASaCKS~~~eh------------------------------AvI~lw~t~~W~~  564 (764)
T KOG1063|consen  515 WPEVHKLYGHGYEVYALAISPTGNLIASACKSSLKEH------------------------------AVIRLWNTANWLQ  564 (764)
T ss_pred             chhhHHhccCceeEEEEEecCCCCEEeehhhhCCccc------------------------------eEEEEEeccchhh
Confidence            3456677799999999999999999999987543211                              2578888888888


Q ss_pred             ceecccCCcceEEEEEeCCCCEEEeecCCCeEEEEECCCCe----eeeeeecCCCCeeeEEEccCCCEEEEEeCCCeEEE
Q 042146           93 LKTLIGHTNYVFCINFNPQSNRIVSDTFNETIRIWDIKTGK----CLKVLPAHSDPVTAIDFNRDGTMIVTSSYDGLYRI  168 (262)
Q Consensus        93 ~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~----~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~  168 (262)
                      .+.+.+|.-.|+.|+|+||+++|++.+.|.++.+|......    .....+.|+.-|.+..|+|++.+|+++|.|++|++
T Consensus       565 ~~~L~~HsLTVT~l~FSpdg~~LLsvsRDRt~sl~~~~~~~~~e~~fa~~k~HtRIIWdcsW~pde~~FaTaSRDK~VkV  644 (764)
T KOG1063|consen  565 VQELEGHSLTVTRLAFSPDGRYLLSVSRDRTVSLYEVQEDIKDEFRFACLKAHTRIIWDCSWSPDEKYFATASRDKKVKV  644 (764)
T ss_pred             hheecccceEEEEEEECCCCcEEEEeecCceEEeeeeecccchhhhhccccccceEEEEcccCcccceeEEecCCceEEE
Confidence            88999999999999999999999999999999999875332    12235789999999999999999999999999999


Q ss_pred             EeCCC-----------------------------CCccEEEEEcCCCeEEEEecCCCceeeEEeccCCceeEEEEEEecC
Q 042146          169 LDAST-----------------------------PNGKFILVGTLDNTLRLWNYSTRKILKTYSGYTNSKYCISSTFSVT  219 (262)
Q Consensus       169 ~d~~~-----------------------------~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~  219 (262)
                      |....                             ..+..+++|-+.|.|.+|....-....+...+.          ...
T Consensus       645 W~~~~~~d~~i~~~a~~~~~~aVTAv~~~~~~~~e~~~~vavGle~GeI~l~~~~~~~~~~~~~~~~----------~~~  714 (764)
T KOG1063|consen  645 WEEPDLRDKYISRFACLKFSLAVTAVAYLPVDHNEKGDVVAVGLEKGEIVLWRRKREHRQVTVGTFN----------LDT  714 (764)
T ss_pred             EeccCchhhhhhhhchhccCCceeeEEeeccccccccceEEEEecccEEEEEecccccccccceeee----------ecc
Confidence            98654                             234578999999999999865211111110000          000


Q ss_pred             CCeeEEccccceEEEEEcCC--------C--CeEEEeeecCCCcEEEEeec
Q 042146          220 NGKYIVSHRDPVISVASHPA--------K--NIIASGALDNDRTMKIWTQE  260 (262)
Q Consensus       220 ~~~~~~~~~~~v~~~~~~p~--------~--~~l~~~~~d~d~~i~iw~~~  260 (262)
                      ......+|...|+.+.|.|.        .  ..|++|+  +|..+|+++++
T Consensus       715 ~l~~~~~~~~aV~rl~w~p~~~~~~~~~~~~l~la~~g--~D~~vri~nv~  763 (764)
T KOG1063|consen  715 RLCATIGPDSAVNRLLWRPTCSDDWVEDKEWLNLAVGG--DDESVRIFNVD  763 (764)
T ss_pred             ccccccChHHhhheeEeccccccccccccceeEEeeec--ccceeEEeecc
Confidence            00011127889999999985        2  2468888  89999999875

>KOG0283 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.88  E-value=3.3e-21  Score=155.79  Aligned_cols=171  Identities=22%  Similarity=0.347  Sum_probs=136.1

Q ss_pred             cccceecccCcCceEEEEEccCCCeEEEecCCCeEEEeecCCCCCCCCCCCCCCccccCCccccccce------------
Q 042146           13 YTLTQTLNGHLRAVSYVKFSHDGRLLTSSSAEKTLLTYSLSSISNFDSTPPSPLQKFTGHEQGISDLA------------   80 (262)
Q Consensus        13 ~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~------------   80 (262)
                      -+++..+.||.+.|..+.||.++ +|+++|.|++||+|++......         ....|...|++++            
T Consensus       359 ekP~~ef~GHt~DILDlSWSKn~-fLLSSSMDKTVRLWh~~~~~CL---------~~F~HndfVTcVaFnPvDDryFiSG  428 (712)
T KOG0283|consen  359 EKPFCEFKGHTADILDLSWSKNN-FLLSSSMDKTVRLWHPGRKECL---------KVFSHNDFVTCVAFNPVDDRYFISG  428 (712)
T ss_pred             ccchhhhhccchhheecccccCC-eeEeccccccEEeecCCCccee---------eEEecCCeeEEEEecccCCCcEeec
Confidence            35788899999999999998765 7999999999999977643222         2223344443333            


Q ss_pred             ----eEEEEecCCCccceecccCCcceEEEEEeCCCCEEEeecCCCeEEEEECCCCeeeeeeec--C------CCCeeeE
Q 042146           81 ----TIRLWDVPTATSLKTLIGHTNYVFCINFNPQSNRIVSDTFNETIRIWDIKTGKCLKVLPA--H------SDPVTAI  148 (262)
Q Consensus        81 ----~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~--~------~~~v~~~  148 (262)
                          .|++|++...+.+.-.. -...|++++|.|+|+..+.|+.+|.+++|+.+..+......-  |      ...|+.+
T Consensus       429 SLD~KvRiWsI~d~~Vv~W~D-l~~lITAvcy~PdGk~avIGt~~G~C~fY~t~~lk~~~~~~I~~~~~Kk~~~~rITG~  507 (712)
T KOG0283|consen  429 SLDGKVRLWSISDKKVVDWND-LRDLITAVCYSPDGKGAVIGTFNGYCRFYDTEGLKLVSDFHIRLHNKKKKQGKRITGL  507 (712)
T ss_pred             ccccceEEeecCcCeeEeehh-hhhhheeEEeccCCceEEEEEeccEEEEEEccCCeEEEeeeEeeccCccccCceeeee
Confidence                89999998776655444 348899999999999999999999999999987766544321  1      2279999


Q ss_pred             EEcc-CCCEEEEEeCCCeEEEEeCCC----------------------CCccEEEEEcCCCeEEEEecC
Q 042146          149 DFNR-DGTMIVTSSYDGLYRILDAST----------------------PNGKFILVGTLDNTLRLWNYS  194 (262)
Q Consensus       149 ~~~~-~~~~l~~~~~dg~i~~~d~~~----------------------~~~~~l~~~~~dg~i~i~d~~  194 (262)
                      .|.| +...+++.+.|..|+|||.+.                      .+|++|+++++|..|++|+..
T Consensus       508 Q~~p~~~~~vLVTSnDSrIRI~d~~~~~lv~KfKG~~n~~SQ~~Asfs~Dgk~IVs~seDs~VYiW~~~  576 (712)
T KOG0283|consen  508 QFFPGDPDEVLVTSNDSRIRIYDGRDKDLVHKFKGFRNTSSQISASFSSDGKHIVSASEDSWVYIWKND  576 (712)
T ss_pred             EecCCCCCeEEEecCCCceEEEeccchhhhhhhcccccCCcceeeeEccCCCEEEEeecCceEEEEeCC
Confidence            9998 445688889999999999955                      799999999999999999973

>KOG0302 consensus Ribosome Assembly protein [General function prediction only]

Probab=99.88  E-value=8.9e-21  Score=140.61  Aligned_cols=158  Identities=24%  Similarity=0.376  Sum_probs=121.0

Q ss_pred             cccccceecccCcCceEEEEEccCC-CeEEEecCCCeEEEeecCCCCCCCCCCCCCCccccCCcccc-------------
Q 042146           11 RPYTLTQTLNGHLRAVSYVKFSHDG-RLLTSSSAEKTLLTYSLSSISNFDSTPPSPLQKFTGHEQGI-------------   76 (262)
Q Consensus        11 ~~~~~~~~~~~h~~~v~~~~~~~~~-~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v-------------   76 (262)
                      ...+++.++.+|.+.=..++|||-. ..|++|.--+.|++|...+. .+....    ..+.+|...|             
T Consensus       199 s~~~Pl~t~~ghk~EGy~LdWSp~~~g~LlsGDc~~~I~lw~~~~g-~W~vd~----~Pf~gH~~SVEDLqWSptE~~vf  273 (440)
T KOG0302|consen  199 SEFRPLFTFNGHKGEGYGLDWSPIKTGRLLSGDCVKGIHLWEPSTG-SWKVDQ----RPFTGHTKSVEDLQWSPTEDGVF  273 (440)
T ss_pred             cccCceEEecccCccceeeecccccccccccCccccceEeeeeccC-ceeecC----ccccccccchhhhccCCccCceE
Confidence            4567889999999999999999942 24889988899999977652 111110    1122222222             


Q ss_pred             ---ccceeEEEEecCCCcc--ceecccCCcceEEEEEeCCCCEEEeecCCCeEEEEECCC---CeeeeeeecCCCCeeeE
Q 042146           77 ---SDLATIRLWDVPTATS--LKTLIGHTNYVFCINFNPQSNRIVSDTFNETIRIWDIKT---GKCLKVLPAHSDPVTAI  148 (262)
Q Consensus        77 ---~~~~~i~v~d~~~~~~--~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~---~~~~~~~~~~~~~v~~~  148 (262)
                         .+.++|+|||++.+..  ....+.|.+.|+.|.|+....+|++|+.||+++|||++.   ++++..++.|+.+|+++
T Consensus       274 aScS~DgsIrIWDiRs~~~~~~~~~kAh~sDVNVISWnr~~~lLasG~DdGt~~iwDLR~~~~~~pVA~fk~Hk~pItsi  353 (440)
T KOG0302|consen  274 ASCSCDGSIRIWDIRSGPKKAAVSTKAHNSDVNVISWNRREPLLASGGDDGTLSIWDLRQFKSGQPVATFKYHKAPITSI  353 (440)
T ss_pred             EeeecCceEEEEEecCCCccceeEeeccCCceeeEEccCCcceeeecCCCceEEEEEhhhccCCCcceeEEeccCCeeEE
Confidence               3344999999998732  223478999999999999888999999999999999985   57888999999999999


Q ss_pred             EEccC-CCEEEEEeCCCeEEEEeCCC
Q 042146          149 DFNRD-GTMIVTSSYDGLYRILDAST  173 (262)
Q Consensus       149 ~~~~~-~~~l~~~~~dg~i~~~d~~~  173 (262)
                      .|+|. ...|++++.|..|.+||+..
T Consensus       354 eW~p~e~s~iaasg~D~QitiWDlsv  379 (440)
T KOG0302|consen  354 EWHPHEDSVIAASGEDNQITIWDLSV  379 (440)
T ss_pred             EeccccCceEEeccCCCcEEEEEeec
Confidence            99994 45777778888888888764

>KOG2096 consensus WD40 repeat protein [General function prediction only]

Probab=99.87  E-value=1.6e-20  Score=136.61  Aligned_cols=160  Identities=21%  Similarity=0.440  Sum_probs=121.4

Q ss_pred             eecccCCcceEEEEEeCCCCEEEeecCCCeEEEEECCCCe-----eeeeeecCCCCeeeEEEccCCCEE-EEEeCCCeEE
Q 042146           94 KTLIGHTNYVFCINFNPQSNRIVSDTFNETIRIWDIKTGK-----CLKVLPAHSDPVTAIDFNRDGTMI-VTSSYDGLYR  167 (262)
Q Consensus        94 ~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~-----~~~~~~~~~~~v~~~~~~~~~~~l-~~~~~dg~i~  167 (262)
                      ..+++|...|++++|+.||++|++++.|+.|++|+++...     +++.- ..-+-.+.++|+||-+-+ +++-...+++
T Consensus        80 ~~LKgH~~~vt~~~FsSdGK~lat~~~Dr~Ir~w~~~DF~~~eHr~~R~n-ve~dhpT~V~FapDc~s~vv~~~~g~~l~  158 (420)
T KOG2096|consen   80 SVLKGHKKEVTDVAFSSDGKKLATISGDRSIRLWDVRDFENKEHRCIRQN-VEYDHPTRVVFAPDCKSVVVSVKRGNKLC  158 (420)
T ss_pred             hhhhccCCceeeeEEcCCCceeEEEeCCceEEEEecchhhhhhhhHhhcc-ccCCCceEEEECCCcceEEEEEccCCEEE
Confidence            3578999999999999999999999999999999997532     11111 112245889999988754 4455667899


Q ss_pred             EEeCCC--------------------------------CCccEEEEEcCCCeEEEEecCCCceeeEEeccCCceeEEEEE
Q 042146          168 ILDAST--------------------------------PNGKFILVGTLDNTLRLWNYSTRKILKTYSGYTNSKYCISST  215 (262)
Q Consensus       168 ~~d~~~--------------------------------~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~  215 (262)
                      +|.+..                                .++.++++++.|..|.+|+++ |+.+..+.......+..+  
T Consensus       159 vyk~~K~~dG~~~~~~v~~D~~~f~~kh~v~~i~iGiA~~~k~imsas~dt~i~lw~lk-Gq~L~~idtnq~~n~~aa--  235 (420)
T KOG2096|consen  159 VYKLVKKTDGSGSHHFVHIDNLEFERKHQVDIINIGIAGNAKYIMSASLDTKICLWDLK-GQLLQSIDTNQSSNYDAA--  235 (420)
T ss_pred             EEEeeecccCCCCcccccccccccchhcccceEEEeecCCceEEEEecCCCcEEEEecC-Cceeeeecccccccccee--
Confidence            998654                                567899999999999999998 888877754332222111  


Q ss_pred             EecCCCee-------------------------------EEccccceEEEEEcCCCCeEEEeeecCCCcEEEEeec
Q 042146          216 FSVTNGKY-------------------------------IVSHRDPVISVASHPAKNIIASGALDNDRTMKIWTQE  260 (262)
Q Consensus       216 ~~~~~~~~-------------------------------~~~~~~~v~~~~~~p~~~~l~~~~~d~d~~i~iw~~~  260 (262)
                      .+ +++++                               +.+|...|..++|+|+...++|.|  .||+++|||++
T Consensus       236 vS-P~GRFia~~gFTpDVkVwE~~f~kdG~fqev~rvf~LkGH~saV~~~aFsn~S~r~vtvS--kDG~wriwdtd  308 (420)
T KOG2096|consen  236 VS-PDGRFIAVSGFTPDVKVWEPIFTKDGTFQEVKRVFSLKGHQSAVLAAAFSNSSTRAVTVS--KDGKWRIWDTD  308 (420)
T ss_pred             eC-CCCcEEEEecCCCCceEEEEEeccCcchhhhhhhheeccchhheeeeeeCCCcceeEEEe--cCCcEEEeecc
Confidence            11 22222                               233999999999999999999999  99999999985

>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.87  E-value=2.3e-21  Score=161.42  Aligned_cols=200  Identities=19%  Similarity=0.307  Sum_probs=162.5

Q ss_pred             CCCceeeecccc--------cceecccCcCceEEEEEccCCC-eEEEecCCCeEEEeecCCCCCCCCCCCCCCccccCCc
Q 042146            3 SDRSLESFRPYT--------LTQTLNGHLRAVSYVKFSHDGR-LLTSSSAEKTLLTYSLSSISNFDSTPPSPLQKFTGHE   73 (262)
Q Consensus         3 ~d~~i~~~~~~~--------~~~~~~~h~~~v~~~~~~~~~~-~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~   73 (262)
                      .||.|..|.+-.        .+.+...|+++|+.+.|++... +||+|+.||.|.|||+.+...                
T Consensus        88 edG~I~ly~p~~~~~~~~~~~la~~~~h~G~V~gLDfN~~q~nlLASGa~~geI~iWDlnn~~t----------------  151 (1049)
T KOG0307|consen   88 EDGNIVLYDPASIIANASEEVLATKSKHTGPVLGLDFNPFQGNLLASGADDGEILIWDLNKPET----------------  151 (1049)
T ss_pred             cCCceEEecchhhccCcchHHHhhhcccCCceeeeeccccCCceeeccCCCCcEEEeccCCcCC----------------
Confidence            488899997544        5667789999999999999755 999999999999998865211                


Q ss_pred             cccccceeEEEEecCCCcccee--cccCCcceEEEEEeC-CCCEEEeecCCCeEEEEECCCCeeeeeeecCCC--CeeeE
Q 042146           74 QGISDLATIRLWDVPTATSLKT--LIGHTNYVFCINFNP-QSNRIVSDTFNETIRIWDIKTGKCLKVLPAHSD--PVTAI  148 (262)
Q Consensus        74 ~~v~~~~~i~v~d~~~~~~~~~--~~~~~~~v~~~~~~~-~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~--~v~~~  148 (262)
                                         ...  -....+.|.+++|+. ....|++++.+|.+.|||++..+.+-.+..+..  .+..+
T Consensus       152 -------------------P~~~~~~~~~~eI~~lsWNrkvqhILAS~s~sg~~~iWDlr~~~pii~ls~~~~~~~~S~l  212 (1049)
T KOG0307|consen  152 -------------------PFTPGSQAPPSEIKCLSWNRKVSHILASGSPSGRAVIWDLRKKKPIIKLSDTPGRMHCSVL  212 (1049)
T ss_pred             -------------------CCCCCCCCCcccceEeccchhhhHHhhccCCCCCceeccccCCCcccccccCCCccceeee
Confidence                               111  122456799999997 456789999999999999999888877766544  47899


Q ss_pred             EEccCC-CEEEEEeCCC---eEEEEeCCC----------------------CCccEEEEEcCCCeEEEEecCCCceeeEE
Q 042146          149 DFNRDG-TMIVTSSYDG---LYRILDAST----------------------PNGKFILVGTLDNTLRLWNYSTRKILKTY  202 (262)
Q Consensus       149 ~~~~~~-~~l~~~~~dg---~i~~~d~~~----------------------~~~~~l~~~~~dg~i~i~d~~~~~~~~~~  202 (262)
                      +|+|+. ..+++++.|.   .|.+||+|.                      .|.++|++++.|+.|..|+.++++.+..+
T Consensus       213 ~WhP~~aTql~~As~dd~~PviqlWDlR~assP~k~~~~H~~GilslsWc~~D~~lllSsgkD~~ii~wN~~tgEvl~~~  292 (1049)
T KOG0307|consen  213 AWHPDHATQLLVASGDDSAPVIQLWDLRFASSPLKILEGHQRGILSLSWCPQDPRLLLSSGKDNRIICWNPNTGEVLGEL  292 (1049)
T ss_pred             eeCCCCceeeeeecCCCCCceeEeecccccCCchhhhcccccceeeeccCCCCchhhhcccCCCCeeEecCCCceEeeec
Confidence            999965 4677776554   699999886                      56689999999999999999999999999


Q ss_pred             eccCCceeEEEEEEecCCCeeEEccccceEEEEEcCCCC-eEEEeeecCCCcEEEEeecc
Q 042146          203 SGYTNSKYCISSTFSVTNGKYIVSHRDPVISVASHPAKN-IIASGALDNDRTMKIWTQEK  261 (262)
Q Consensus       203 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~-~l~~~~~d~d~~i~iw~~~~  261 (262)
                      ..                      ....+..+.|+|... .++.++  -||.|.|+.+..
T Consensus       293 p~----------------------~~nW~fdv~w~pr~P~~~A~as--fdgkI~I~sl~~  328 (1049)
T KOG0307|consen  293 PA----------------------QGNWCFDVQWCPRNPSVMAAAS--FDGKISIYSLQG  328 (1049)
T ss_pred             CC----------------------CCcceeeeeecCCCcchhhhhe--eccceeeeeeec
Confidence            86                      667889999999887 777778  789999998753

>KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown]

Probab=99.86  E-value=1.3e-20  Score=135.36  Aligned_cols=189  Identities=20%  Similarity=0.312  Sum_probs=139.0

Q ss_pred             cCcCceEEEEEccCCC-----eEEEecCCCeEEEeecCCCCCCCCCCCCCCccccCCccccccceeEEEEecCCCcccee
Q 042146           21 GHLRAVSYVKFSHDGR-----LLTSSSAEKTLLTYSLSSISNFDSTPPSPLQKFTGHEQGISDLATIRLWDVPTATSLKT   95 (262)
Q Consensus        21 ~h~~~v~~~~~~~~~~-----~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~i~v~d~~~~~~~~~   95 (262)
                      .|.-+++.+.|.|+..     +|||.+  ..+|+|.+.....    .......                  +.+    ..
T Consensus        94 d~~YP~tK~~wiPd~~g~~pdlLATs~--D~LRlWri~~ee~----~~~~~~~------------------L~~----~k  145 (364)
T KOG0290|consen   94 DHPYPVTKLMWIPDSKGVYPDLLATSS--DFLRLWRIGDEES----RVELQSV------------------LNN----NK  145 (364)
T ss_pred             CCCCCccceEecCCccccCcchhhccc--CeEEEEeccCcCC----ceehhhh------------------hcc----Cc
Confidence            5889999999999753     566654  4788896643100    0000000                  000    01


Q ss_pred             cccCCcceEEEEEeC-CCCEEEeecCCCeEEEEECCCCe---eeeeeecCCCCeeeEEEccCC-CEEEEEeCCCeEEEEe
Q 042146           96 LIGHTNYVFCINFNP-QSNRIVSDTFNETIRIWDIKTGK---CLKVLPAHSDPVTAIDFNRDG-TMIVTSSYDGLYRILD  170 (262)
Q Consensus        96 ~~~~~~~v~~~~~~~-~~~~l~~~~~dg~i~vwd~~~~~---~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~dg~i~~~d  170 (262)
                      -..+.+++++..|+. +.+++.+.+-|-+..|||++++.   ....+-+|..+|..++|...+ +.|++.+.||.+++||
T Consensus       146 ns~~~aPlTSFDWne~dp~~igtSSiDTTCTiWdie~~~~~~vkTQLIAHDKEV~DIaf~~~s~~~FASvgaDGSvRmFD  225 (364)
T KOG0290|consen  146 NSEFCAPLTSFDWNEVDPNLIGTSSIDTTCTIWDIETGVSGTVKTQLIAHDKEVYDIAFLKGSRDVFASVGADGSVRMFD  225 (364)
T ss_pred             ccccCCcccccccccCCcceeEeecccCeEEEEEEeeccccceeeEEEecCcceeEEEeccCccceEEEecCCCcEEEEE
Confidence            123667999999998 88899999999999999999873   355667899999999999855 4899999999999999


Q ss_pred             CCC------------------------CCccEEEEEcCC-CeEEEEecCC-CceeeEEeccCCceeEEEEEEecCCCeeE
Q 042146          171 AST------------------------PNGKFILVGTLD-NTLRLWNYST-RKILKTYSGYTNSKYCISSTFSVTNGKYI  224 (262)
Q Consensus       171 ~~~------------------------~~~~~l~~~~~d-g~i~i~d~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  224 (262)
                      +|.                        .+.+++++-..| ..|.|.|++. ..++..+++                    
T Consensus       226 LR~leHSTIIYE~p~~~~pLlRLswnkqDpnymATf~~dS~~V~iLDiR~P~tpva~L~~--------------------  285 (364)
T KOG0290|consen  226 LRSLEHSTIIYEDPSPSTPLLRLSWNKQDPNYMATFAMDSNKVVILDIRVPCTPVARLRN--------------------  285 (364)
T ss_pred             ecccccceEEecCCCCCCcceeeccCcCCchHHhhhhcCCceEEEEEecCCCcceehhhc--------------------
Confidence            998                        234555554433 4677777775 456666666                    


Q ss_pred             EccccceEEEEEcCCC-CeEEEeeecCCCcEEEEeecc
Q 042146          225 VSHRDPVISVASHPAK-NIIASGALDNDRTMKIWTQEK  261 (262)
Q Consensus       225 ~~~~~~v~~~~~~p~~-~~l~~~~~d~d~~i~iw~~~~  261 (262)
                        |++.|+.++|.|.. ..|+|+|  .|..+.+||++.
T Consensus       286 --H~a~VNgIaWaPhS~~hictaG--DD~qaliWDl~q  319 (364)
T KOG0290|consen  286 --HQASVNGIAWAPHSSSHICTAG--DDCQALIWDLQQ  319 (364)
T ss_pred             --CcccccceEecCCCCceeeecC--CcceEEEEeccc
Confidence              99999999999974 5788888  899999999864

>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]

Probab=99.86  E-value=7.5e-20  Score=145.25  Aligned_cols=229  Identities=21%  Similarity=0.347  Sum_probs=170.4

Q ss_pred             CCCceeeec--ccccceecccCcCceEEEEEccCCCeEEEecCCCeEEEeecCCCCCCCCCCCCCCccccC----Ccccc
Q 042146            3 SDRSLESFR--PYTLTQTLNGHLRAVSYVKFSHDGRLLTSSSAEKTLLTYSLSSISNFDSTPPSPLQKFTG----HEQGI   76 (262)
Q Consensus         3 ~d~~i~~~~--~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~----~~~~v   76 (262)
                      ++..+..|+  ...+.+++++|...|.|++|+.||+.||+|+.|+.|.+|+-.-...........++....    |...-
T Consensus        31 Ag~rlliyD~ndG~llqtLKgHKDtVycVAys~dGkrFASG~aDK~VI~W~~klEG~LkYSH~D~IQCMsFNP~~h~Las  110 (1081)
T KOG1538|consen   31 AGSRLLVYDTSDGTLLQPLKGHKDTVYCVAYAKDGKRFASGSADKSVIIWTSKLEGILKYSHNDAIQCMSFNPITHQLAS  110 (1081)
T ss_pred             cCCEEEEEeCCCcccccccccccceEEEEEEccCCceeccCCCceeEEEecccccceeeeccCCeeeEeecCchHHHhhh
Confidence            455566665  467899999999999999999999999999999999999754322222222333332221    11122


Q ss_pred             ccceeEEEEecCCCccceecccCCcceEEEEEeCCCCEEEeecCCCeEEEEECCCCeeeeee---ecCCCCeeeEEEccC
Q 042146           77 SDLATIRLWDVPTATSLKTLIGHTNYVFCINFNPQSNRIVSDTFNETIRIWDIKTGKCLKVL---PAHSDPVTAIDFNRD  153 (262)
Q Consensus        77 ~~~~~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~---~~~~~~v~~~~~~~~  153 (262)
                      .++...-+|..+.....+ . .....+.+.+|..||++++.|-.+|+|.+-+-. +++.-.+   .+.+++|.+++|+|.
T Consensus       111 CsLsdFglWS~~qK~V~K-~-kss~R~~~CsWtnDGqylalG~~nGTIsiRNk~-gEek~~I~Rpgg~Nspiwsi~~~p~  187 (1081)
T KOG1538|consen  111 CSLSDFGLWSPEQKSVSK-H-KSSSRIICCSWTNDGQYLALGMFNGTISIRNKN-GEEKVKIERPGGSNSPIWSICWNPS  187 (1081)
T ss_pred             cchhhccccChhhhhHHh-h-hhheeEEEeeecCCCcEEEEeccCceEEeecCC-CCcceEEeCCCCCCCCceEEEecCC
Confidence            233356677765433222 1 234678999999999999999999999998743 3332233   246789999999994


Q ss_pred             C-----CEEEEEeCCCeEEEEeCCC-------------------CCccEEEEEcCCCeEEEEecCCCceeeEEeccCCce
Q 042146          154 G-----TMIVTSSYDGLYRILDAST-------------------PNGKFILVGTLDNTLRLWNYSTRKILKTYSGYTNSK  209 (262)
Q Consensus       154 ~-----~~l~~~~~dg~i~~~d~~~-------------------~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~  209 (262)
                      .     ..+++.....++..|.+..                   ++|.|++.|+.|+.+.+|- +.|-.+.++..     
T Consensus       188 sg~G~~di~aV~DW~qTLSFy~LsG~~Igk~r~L~FdP~CisYf~NGEy~LiGGsdk~L~~fT-R~GvrLGTvg~-----  261 (1081)
T KOG1538|consen  188 SGEGRNDILAVADWGQTLSFYQLSGKQIGKDRALNFDPCCISYFTNGEYILLGGSDKQLSLFT-RDGVRLGTVGE-----  261 (1081)
T ss_pred             CCCCccceEEEEeccceeEEEEecceeecccccCCCCchhheeccCCcEEEEccCCCceEEEe-ecCeEEeeccc-----
Confidence            3     4788899999999998765                   8999999999999999996 44666666654     


Q ss_pred             eEEEEEEecCCCeeEEccccceEEEEEcCCCCeEEEeeecCCCcEEEEee
Q 042146          210 YCISSTFSVTNGKYIVSHRDPVISVASHPAKNIIASGALDNDRTMKIWTQ  259 (262)
Q Consensus       210 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~d~d~~i~iw~~  259 (262)
                                       .+..|..++..|+++.++.|+  .||+|-.|++
T Consensus       262 -----------------~D~WIWtV~~~PNsQ~v~~GC--qDGTiACyNl  292 (1081)
T KOG1538|consen  262 -----------------QDSWIWTVQAKPNSQYVVVGC--QDGTIACYNL  292 (1081)
T ss_pred             -----------------cceeEEEEEEccCCceEEEEE--ccCeeehhhh
Confidence                             667899999999999999999  8999988875

>KOG1539 consensus WD repeat protein [General function prediction only]

Probab=99.86  E-value=1.3e-19  Score=146.69  Aligned_cols=177  Identities=20%  Similarity=0.368  Sum_probs=154.3

Q ss_pred             cCceEEEEEccCCCeEEEecCCCeEEEeecCCCCCCCCCCCCCCccccCCccccccceeEEEEecCCCccceec---ccC
Q 042146           23 LRAVSYVKFSHDGRLLTSSSAEKTLLTYSLSSISNFDSTPPSPLQKFTGHEQGISDLATIRLWDVPTATSLKTL---IGH   99 (262)
Q Consensus        23 ~~~v~~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~i~v~d~~~~~~~~~~---~~~   99 (262)
                      ...+++++.++.|++.+.|...|+|-+|+++.                                   |-....+   +.|
T Consensus       448 ~~~~~av~vs~CGNF~~IG~S~G~Id~fNmQS-----------------------------------Gi~r~sf~~~~ah  492 (910)
T KOG1539|consen  448 DINATAVCVSFCGNFVFIGYSKGTIDRFNMQS-----------------------------------GIHRKSFGDSPAH  492 (910)
T ss_pred             CcceEEEEEeccCceEEEeccCCeEEEEEccc-----------------------------------CeeecccccCccc
Confidence            47799999999999999999999998887654                                   3333344   579


Q ss_pred             CcceEEEEEeCCCCEEEeecCCCeEEEEECCCCeeeeeeecCCCCeeeEEEccCCCEEEEEeCCCeEEEEeCCC------
Q 042146          100 TNYVFCINFNPQSNRIVSDTFNETIRIWDIKTGKCLKVLPAHSDPVTAIDFNRDGTMIVTSSYDGLYRILDAST------  173 (262)
Q Consensus       100 ~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~d~~~------  173 (262)
                      +.+|+.++...-++.+++++.+|.+++||+.+..++..+. -..++.++.++.....++.+..|-.|+++|+.+      
T Consensus       493 ~~~V~gla~D~~n~~~vsa~~~Gilkfw~f~~k~l~~~l~-l~~~~~~iv~hr~s~l~a~~~ddf~I~vvD~~t~kvvR~  571 (910)
T KOG1539|consen  493 KGEVTGLAVDGTNRLLVSAGADGILKFWDFKKKVLKKSLR-LGSSITGIVYHRVSDLLAIALDDFSIRVVDVVTRKVVRE  571 (910)
T ss_pred             cCceeEEEecCCCceEEEccCcceEEEEecCCcceeeeec-cCCCcceeeeeehhhhhhhhcCceeEEEEEchhhhhhHH
Confidence            9999999999989999999999999999999888777775 466789999999889999999999999999875      


Q ss_pred             --------------CCccEEEEEcCCCeEEEEecCCCceeeEEeccCCceeEEEEEEecCCCeeEEccccceEEEEEcCC
Q 042146          174 --------------PNGKFILVGTLDNTLRLWNYSTRKILKTYSGYTNSKYCISSTFSVTNGKYIVSHRDPVISVASHPA  239 (262)
Q Consensus       174 --------------~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~  239 (262)
                                    |+|++|++++.|++|++||+.++.++..+.                       -+.+++++.|+|+
T Consensus       572 f~gh~nritd~~FS~DgrWlisasmD~tIr~wDlpt~~lID~~~-----------------------vd~~~~sls~SPn  628 (910)
T KOG1539|consen  572 FWGHGNRITDMTFSPDGRWLISASMDSTIRTWDLPTGTLIDGLL-----------------------VDSPCTSLSFSPN  628 (910)
T ss_pred             hhccccceeeeEeCCCCcEEEEeecCCcEEEEeccCcceeeeEe-----------------------cCCcceeeEECCC
Confidence                          899999999999999999999999998886                       5678999999999


Q ss_pred             CCeEEEeeecCCCcEEEEee
Q 042146          240 KNIIASGALDNDRTMKIWTQ  259 (262)
Q Consensus       240 ~~~l~~~~~d~d~~i~iw~~  259 (262)
                      |.+|||...| ..-|++|.-
T Consensus       629 gD~LAT~Hvd-~~gIylWsN  647 (910)
T KOG1539|consen  629 GDFLATVHVD-QNGIYLWSN  647 (910)
T ss_pred             CCEEEEEEec-CceEEEEEc
Confidence            9999999943 367999963

>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]

Probab=99.85  E-value=2e-19  Score=138.13  Aligned_cols=230  Identities=12%  Similarity=0.185  Sum_probs=168.0

Q ss_pred             eeeecccccceecccCc--CceEEEEEccCCC-eEEEecCCCeEEEeecCCC----CCCCCCCCCCCccccCCcccc---
Q 042146            7 LESFRPYTLTQTLNGHL--RAVSYVKFSHDGR-LLTSSSAEKTLLTYSLSSI----SNFDSTPPSPLQKFTGHEQGI---   76 (262)
Q Consensus         7 i~~~~~~~~~~~~~~h~--~~v~~~~~~~~~~-~l~s~~~d~~i~iw~~~~~----~~~~~~~~~~~~~~~~~~~~v---   76 (262)
                      |+++......-.+..|+  ..+.++.|+.... ..++.+.|..+++|.-...    .......+....+........   
T Consensus        16 l~D~s~~~~~~~~~~~t~~pg~~s~~w~~~n~lvvas~~gdk~~~~~~K~g~~~~Vp~~~k~~gd~~~Cv~~~s~S~y~~   95 (673)
T KOG4378|consen   16 LSDFSDLETKSEYVHQTAEPGDFSFNWQRRNFLVVASMAGDKVMRIKEKDGKTPEVPRVRKLTGDNAFCVACASQSLYEI   95 (673)
T ss_pred             EeecccccCccccccCCCCCcceeeeccccceEEEeecCCceeEEEecccCCCCccceeeccccchHHHHhhhhcceeee
Confidence            44444555444444443  3388899987664 3344567889999954331    000001111100110000001   


Q ss_pred             --ccceeEEEEecCCCccceecccCCcceEEEEEeCCCCEEEeecCCCeEEEEECCCCeeeeeeecCCC-CeeeEEEccC
Q 042146           77 --SDLATIRLWDVPTATSLKTLIGHTNYVFCINFNPQSNRIVSDTFNETIRIWDIKTGKCLKVLPAHSD-PVTAIDFNRD  153 (262)
Q Consensus        77 --~~~~~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~-~v~~~~~~~~  153 (262)
                        ..-+.|++||++.....+.+++|+..|+++.++-...+||+++..|.|.|..+.++.....+....+ .|.-+.|+|.
T Consensus        96 sgG~~~~Vkiwdl~~kl~hr~lkdh~stvt~v~YN~~DeyiAsvs~gGdiiih~~~t~~~tt~f~~~sgqsvRll~ys~s  175 (673)
T KOG4378|consen   96 SGGQSGCVKIWDLRAKLIHRFLKDHQSTVTYVDYNNTDEYIASVSDGGDIIIHGTKTKQKTTTFTIDSGQSVRLLRYSPS  175 (673)
T ss_pred             ccCcCceeeehhhHHHHHhhhccCCcceeEEEEecCCcceeEEeccCCcEEEEecccCccccceecCCCCeEEEeecccc
Confidence              1112899999997777788999999999999999999999999999999999999988888865434 5668999996


Q ss_pred             CC-EEEEEeCCCeEEEEeCCC----------------------CCccEEEEEcCCCeEEEEecCCCceeeEEeccCCcee
Q 042146          154 GT-MIVTSSYDGLYRILDAST----------------------PNGKFILVGTLDNTLRLWNYSTRKILKTYSGYTNSKY  210 (262)
Q Consensus       154 ~~-~l~~~~~dg~i~~~d~~~----------------------~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~  210 (262)
                      .+ +|.+++.+|.|.+||+..                      .+..+|++.+.|..|.+||.+..+....+.       
T Consensus       176 kr~lL~~asd~G~VtlwDv~g~sp~~~~~~~HsAP~~gicfspsne~l~vsVG~Dkki~~yD~~s~~s~~~l~-------  248 (673)
T KOG4378|consen  176 KRFLLSIASDKGAVTLWDVQGMSPIFHASEAHSAPCRGICFSPSNEALLVSVGYDKKINIYDIRSQASTDRLT-------  248 (673)
T ss_pred             cceeeEeeccCCeEEEEeccCCCcccchhhhccCCcCcceecCCccceEEEecccceEEEeecccccccceee-------
Confidence            65 678889999999999876                      456788899999999999999877777665       


Q ss_pred             EEEEEEecCCCeeEEccccceEEEEEcCCCCeEEEeeecCCCcEEEEeecc
Q 042146          211 CISSTFSVTNGKYIVSHRDPVISVASHPAKNIIASGALDNDRTMKIWTQEK  261 (262)
Q Consensus       211 ~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~d~d~~i~iw~~~~  261 (262)
                                      ...+...++|.|+|.+|+.|.  ..|.|..||+..
T Consensus       249 ----------------y~~Plstvaf~~~G~~L~aG~--s~G~~i~YD~R~  281 (673)
T KOG4378|consen  249 ----------------YSHPLSTVAFSECGTYLCAGN--SKGELIAYDMRS  281 (673)
T ss_pred             ----------------ecCCcceeeecCCceEEEeec--CCceEEEEeccc
Confidence                            566889999999999999999  899999999864

>KOG1310 consensus WD40 repeat protein [General function prediction only]

Probab=99.85  E-value=2.5e-20  Score=144.73  Aligned_cols=211  Identities=20%  Similarity=0.329  Sum_probs=152.0

Q ss_pred             ccccceecccCcCceEEEEEccCCCeEEEecCCCeEEEeecCCCCCCCCCCCCCCccccCCccccccceeEEEEecCCCc
Q 042146           12 PYTLTQTLNGHLRAVSYVKFSHDGRLLTSSSAEKTLLTYSLSSISNFDSTPPSPLQKFTGHEQGISDLATIRLWDVPTAT   91 (262)
Q Consensus        12 ~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~i~v~d~~~~~   91 (262)
                      ...+.+.+.||++-|+|++|+.+|.+|++||.|-.+.|||.-                                   ..+
T Consensus        39 rL~lE~eL~GH~GCVN~LeWn~dG~lL~SGSDD~r~ivWd~~-----------------------------------~~K   83 (758)
T KOG1310|consen   39 RLDLEAELTGHTGCVNCLEWNADGELLASGSDDTRLIVWDPF-----------------------------------EYK   83 (758)
T ss_pred             hcchhhhhccccceecceeecCCCCEEeecCCcceEEeecch-----------------------------------hcc
Confidence            345677889999999999999999999999999999888653                                   233


Q ss_pred             cceec-ccCCcceEEEEEeC--CCCEEEeecCCCeEEEEECCC----------CeeeeeeecCCCCeeeEEEccCC-CEE
Q 042146           92 SLKTL-IGHTNYVFCINFNP--QSNRIVSDTFNETIRIWDIKT----------GKCLKVLPAHSDPVTAIDFNRDG-TMI  157 (262)
Q Consensus        92 ~~~~~-~~~~~~v~~~~~~~--~~~~l~~~~~dg~i~vwd~~~----------~~~~~~~~~~~~~v~~~~~~~~~-~~l  157 (262)
                      ++..+ .+|...|.+++|-|  +.+++++|..|..|+++|+..          ......+..|...|..++-.|++ +.+
T Consensus        84 llhsI~TgHtaNIFsvKFvP~tnnriv~sgAgDk~i~lfdl~~~~~~~~d~~~~~~~~~~~cht~rVKria~~p~~Phtf  163 (758)
T KOG1310|consen   84 LLHSISTGHTANIFSVKFVPYTNNRIVLSGAGDKLIKLFDLDSSKEGGMDHGMEETTRCWSCHTDRVKRIATAPNGPHTF  163 (758)
T ss_pred             eeeeeecccccceeEEeeeccCCCeEEEeccCcceEEEEecccccccccccCccchhhhhhhhhhhhhheecCCCCCceE
Confidence            33333 47999999999999  667899999999999999974          23445567799999999999987 789


Q ss_pred             EEEeCCCeEEEEeCCC-------------------------------CCccEEEEEcCCCeEEEEecCCCceeeEEeccC
Q 042146          158 VTSSYDGLYRILDAST-------------------------------PNGKFILVGTLDNTLRLWNYSTRKILKTYSGYT  206 (262)
Q Consensus       158 ~~~~~dg~i~~~d~~~-------------------------------~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~  206 (262)
                      .+++.||+|+-+|+|.                               .+..+|++|+.|-..++||.+..  +..+....
T Consensus       164 wsasEDGtirQyDiREph~c~p~~~~~~~l~ny~~~lielk~ltisp~rp~~laVGgsdpfarLYD~Rr~--lks~~s~~  241 (758)
T KOG1310|consen  164 WSASEDGTIRQYDIREPHVCNPDEDCPSILVNYNPQLIELKCLTISPSRPYYLAVGGSDPFARLYDRRRV--LKSFRSDG  241 (758)
T ss_pred             EEecCCcceeeecccCCccCCccccccHHHHHhchhhheeeeeeecCCCCceEEecCCCchhhhhhhhhh--ccCCCCCc
Confidence            9999999999999997                               35679999999999999996421  11111110


Q ss_pred             -----CceeEEEEEEecCCCe-eEEc----cccceEEEEEcCCCCeEEEeeecCCCcEEEEeecc
Q 042146          207 -----NSKYCISSTFSVTNGK-YIVS----HRDPVISVASHPAKNIIASGALDNDRTMKIWTQEK  261 (262)
Q Consensus       207 -----~~~~~~~~~~~~~~~~-~~~~----~~~~v~~~~~~p~~~~l~~~~~d~d~~i~iw~~~~  261 (262)
                           ++..+..+.+..+... ...+    -...++-++|+|+|.-|...-  ..-.|++++++.
T Consensus       242 ~~~~~pp~~~~cv~yf~p~hlkn~~gn~~~~~~~~t~vtfnpNGtElLvs~--~gEhVYlfdvn~  304 (758)
T KOG1310|consen  242 TMNTCPPKDCRCVRYFSPGHLKNSQGNLDRYITCCTYVTFNPNGTELLVSW--GGEHVYLFDVNE  304 (758)
T ss_pred             cccCCCCcccchhheecCccccCcccccccceeeeEEEEECCCCcEEEEee--CCeEEEEEeecC
Confidence                 1111111111111110 0000    112267788999998666553  355899999875

>KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown]

Probab=99.85  E-value=3.4e-20  Score=145.96  Aligned_cols=196  Identities=18%  Similarity=0.289  Sum_probs=149.1

Q ss_pred             cCcCceEE--EEEcc---CCCeEEEecCCCeEEEeecCCCCCCCCCCCCCCccccCCccccccceeEEEEecCCCcccee
Q 042146           21 GHLRAVSY--VKFSH---DGRLLTSSSAEKTLLTYSLSSISNFDSTPPSPLQKFTGHEQGISDLATIRLWDVPTATSLKT   95 (262)
Q Consensus        21 ~h~~~v~~--~~~~~---~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~i~v~d~~~~~~~~~   95 (262)
                      .|.-++.-  ..|++   ....|+.+.+||.|.++|......                            .+ ....+..
T Consensus        45 ~~~~p~pPf~~sFs~~~n~eHiLavadE~G~i~l~dt~~~~f----------------------------r~-ee~~lk~   95 (720)
T KOG0321|consen   45 NDGLPVPPFADSFSAAPNKEHILAVADEDGGIILFDTKSIVF----------------------------RL-EERQLKK   95 (720)
T ss_pred             cCCCCCCCccccccCCCCccceEEEecCCCceeeecchhhhc----------------------------ch-hhhhhcc
Confidence            34444443  56655   345799999999999998754211                            11 2233456


Q ss_pred             cccCCcceEEEEEeCCCCEEEeecCCCeEEEEECCCCeeeee--eecCCCCeeeEEEcc-CCCEEEEEeCCCeEEEEeCC
Q 042146           96 LIGHTNYVFCINFNPQSNRIVSDTFNETIRIWDIKTGKCLKV--LPAHSDPVTAIDFNR-DGTMIVTSSYDGLYRILDAS  172 (262)
Q Consensus        96 ~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~--~~~~~~~v~~~~~~~-~~~~l~~~~~dg~i~~~d~~  172 (262)
                      ...|...|..+.|.|....|++++.|.++++||+++++++..  +.+|...|.+++|+| +...|++|+.||.|.|||++
T Consensus        96 ~~aH~nAifDl~wapge~~lVsasGDsT~r~Wdvk~s~l~G~~~~~GH~~SvkS~cf~~~n~~vF~tGgRDg~illWD~R  175 (720)
T KOG0321|consen   96 PLAHKNAIFDLKWAPGESLLVSASGDSTIRPWDVKTSRLVGGRLNLGHTGSVKSECFMPTNPAVFCTGGRDGEILLWDCR  175 (720)
T ss_pred             cccccceeEeeccCCCceeEEEccCCceeeeeeeccceeecceeecccccccchhhhccCCCcceeeccCCCcEEEEEEe
Confidence            678999999999999777899999999999999999888766  889999999999999 56789999999999999988


Q ss_pred             C--------------------------------------------------CCccEEEEEcC-CCeEEEEecCCCceeeE
Q 042146          173 T--------------------------------------------------PNGKFILVGTL-DNTLRLWNYSTRKILKT  201 (262)
Q Consensus       173 ~--------------------------------------------------~~~~~l~~~~~-dg~i~i~d~~~~~~~~~  201 (262)
                      .                                                  .|...|++++. |+.|+|||++.......
T Consensus       176 ~n~~d~~e~~~~~~~~~~n~~ptpskp~~kr~~k~kA~s~ti~ssvTvv~fkDe~tlaSaga~D~~iKVWDLRk~~~~~r  255 (720)
T KOG0321|consen  176 CNGVDALEEFDNRIYGRHNTAPTPSKPLKKRIRKWKAASNTIFSSVTVVLFKDESTLASAGAADSTIKVWDLRKNYTAYR  255 (720)
T ss_pred             ccchhhHHHHhhhhhccccCCCCCCchhhccccccccccCceeeeeEEEEEeccceeeeccCCCcceEEEeecccccccc
Confidence            6                                                  47788888887 99999999997654433


Q ss_pred             EeccCCceeEEEEEEecCCCeeEEcc---ccceEEEEEcCCCCeEEEeeecCCCcEEEEeecc
Q 042146          202 YSGYTNSKYCISSTFSVTNGKYIVSH---RDPVISVASHPAKNIIASGALDNDRTMKIWTQEK  261 (262)
Q Consensus       202 ~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~v~~~~~~p~~~~l~~~~~d~d~~i~iw~~~~  261 (262)
                      ........+.              .|   .-.+.++.....|.+|.+.+  .|+.|++|++..
T Consensus       256 ~ep~~~~~~~--------------t~skrs~G~~nL~lDssGt~L~AsC--tD~sIy~ynm~s  302 (720)
T KOG0321|consen  256 QEPRGSDKYP--------------THSKRSVGQVNLILDSSGTYLFASC--TDNSIYFYNMRS  302 (720)
T ss_pred             cCCCcccCcc--------------CcccceeeeEEEEecCCCCeEEEEe--cCCcEEEEeccc
Confidence            3221110000              02   33577888888899998888  789999999864

>KOG0649 consensus WD40 repeat protein [General function prediction only]

Probab=99.85  E-value=9.6e-19  Score=123.02  Aligned_cols=209  Identities=18%  Similarity=0.235  Sum_probs=151.9

Q ss_pred             CceEEEEEccCCCeEEEecCCCeEEEeecCCCCCCCCCCC--CCCccccCCccccccce------------eEEEEecCC
Q 042146           24 RAVSYVKFSHDGRLLTSSSAEKTLLTYSLSSISNFDSTPP--SPLQKFTGHEQGISDLA------------TIRLWDVPT   89 (262)
Q Consensus        24 ~~v~~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~--~~~~~~~~~~~~v~~~~------------~i~v~d~~~   89 (262)
                      ..|.+-+++|.+++|++|+.+|+|.+..+......+..++  ..+....+|..+++.+.            .|+-|..+.
T Consensus        11 ~tvf~qa~sp~~~~l~agn~~G~iav~sl~sl~s~sa~~~gk~~iv~eqahdgpiy~~~f~d~~Lls~gdG~V~gw~W~E   90 (325)
T KOG0649|consen   11 NTVFAQAISPSKQYLFAGNLFGDIAVLSLKSLDSGSAEPPGKLKIVPEQAHDGPIYYLAFHDDFLLSGGDGLVYGWEWNE   90 (325)
T ss_pred             HHHHHHhhCCcceEEEEecCCCeEEEEEehhhhccccCCCCCcceeeccccCCCeeeeeeehhheeeccCceEEEeeehh
Confidence            3466778999999999999999999999987544333322  23344467777776655            666665543


Q ss_pred             Ccc------ceec--ccC-----CcceEEEEEeCCCCEEEeecCCCeEEEEECCCCeeeeeeecCCCCeeeEEEccCCCE
Q 042146           90 ATS------LKTL--IGH-----TNYVFCINFNPQSNRIVSDTFNETIRIWDIKTGKCLKVLPAHSDPVTAIDFNRDGTM  156 (262)
Q Consensus        90 ~~~------~~~~--~~~-----~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~  156 (262)
                      ...      +...  +-|     -..|++|...|..+-++.++.|+.++-||+++|+..+++++|++.|.+++--.....
T Consensus        91 ~~es~~~K~lwe~~~P~~~~~~evPeINam~ldP~enSi~~AgGD~~~y~~dlE~G~i~r~~rGHtDYvH~vv~R~~~~q  170 (325)
T KOG0649|consen   91 EEESLATKRLWEVKIPMQVDAVEVPEINAMWLDPSENSILFAGGDGVIYQVDLEDGRIQREYRGHTDYVHSVVGRNANGQ  170 (325)
T ss_pred             hhhhccchhhhhhcCccccCcccCCccceeEeccCCCcEEEecCCeEEEEEEecCCEEEEEEcCCcceeeeeeecccCcc
Confidence            221      1111  112     246899999997776766668999999999999999999999999999998666678


Q ss_pred             EEEEeCCCeEEEEeCCC----------------------------CCccEEEEEcCCCeEEEEecCCCceeeEEeccCCc
Q 042146          157 IVTSSYDGLYRILDAST----------------------------PNGKFILVGTLDNTLRLWNYSTRKILKTYSGYTNS  208 (262)
Q Consensus       157 l~~~~~dg~i~~~d~~~----------------------------~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~  208 (262)
                      +++|+.||++++||+++                            .+..++++|+ ...+.+|+++..++...++     
T Consensus       171 ilsG~EDGtvRvWd~kt~k~v~~ie~yk~~~~lRp~~g~wigala~~edWlvCGg-Gp~lslwhLrsse~t~vfp-----  244 (325)
T KOG0649|consen  171 ILSGAEDGTVRVWDTKTQKHVSMIEPYKNPNLLRPDWGKWIGALAVNEDWLVCGG-GPKLSLWHLRSSESTCVFP-----  244 (325)
T ss_pred             eeecCCCccEEEEeccccceeEEeccccChhhcCcccCceeEEEeccCceEEecC-CCceeEEeccCCCceEEEe-----
Confidence            99999999999999987                            3455666665 3568999999998888887     


Q ss_pred             eeEEEEEEecCCCeeEEccccceEEEEEcCCCCeEEEeeecCCCcEEEEeec
Q 042146          209 KYCISSTFSVTNGKYIVSHRDPVISVASHPAKNIIASGALDNDRTMKIWTQE  260 (262)
Q Consensus       209 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~d~d~~i~iw~~~  260 (262)
                                        -..++..+.|.  .+.+++++  +.+.|.-|.++
T Consensus       245 ------------------ipa~v~~v~F~--~d~vl~~G--~g~~v~~~~l~  274 (325)
T KOG0649|consen  245 ------------------IPARVHLVDFV--DDCVLIGG--EGNHVQSYTLN  274 (325)
T ss_pred             ------------------cccceeEeeee--cceEEEec--cccceeeeeec
Confidence                              44566666665  33455555  45566666554

>KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only]

Probab=99.85  E-value=1.5e-21  Score=157.92  Aligned_cols=210  Identities=27%  Similarity=0.398  Sum_probs=160.2

Q ss_pred             cccccceecccCcCceEEEEEccCCCeEEEecCCCeEEEeecCCCCCCCCCCCCCCccccCCccccccceeEEEEecCCC
Q 042146           11 RPYTLTQTLNGHLRAVSYVKFSHDGRLLTSSSAEKTLLTYSLSSISNFDSTPPSPLQKFTGHEQGISDLATIRLWDVPTA   90 (262)
Q Consensus        11 ~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~i~v~d~~~~   90 (262)
                      +..+.++.+.+|..+|.|..|...|.++++|+.|..++||.                                   .+++
T Consensus       178 qkmk~ikrLlgH~naVyca~fDrtg~~Iitgsdd~lvKiwS-----------------------------------~et~  222 (1113)
T KOG0644|consen  178 QKMKNIKRLLGHRNAVYCAIFDRTGRYIITGSDDRLVKIWS-----------------------------------META  222 (1113)
T ss_pred             HHHHHHHHHHhhhhheeeeeeccccceEeecCccceeeeee-----------------------------------ccch
Confidence            44566777889999999999999999999999999988884                                   4577


Q ss_pred             ccceecccCCcceEEEEEeCCCCEEEeecCCCeEEEEECCCCeeeeeeecCCCCeeeEEEccCCCEEEEEeCCCeEEEEe
Q 042146           91 TSLKTLIGHTNYVFCINFNPQSNRIVSDTFNETIRIWDIKTGKCLKVLPAHSDPVTAIDFNRDGTMIVTSSYDGLYRILD  170 (262)
Q Consensus        91 ~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~d  170 (262)
                      .++....+|.+.|+.++.+.+..++++++.|..|++|-+..+.++..+.+|++.|++++|+|-.    +.+.||++++||
T Consensus       223 ~~lAs~rGhs~ditdlavs~~n~~iaaaS~D~vIrvWrl~~~~pvsvLrghtgavtaiafsP~~----sss~dgt~~~wd  298 (1113)
T KOG0644|consen  223 RCLASCRGHSGDITDLAVSSNNTMIAAASNDKVIRVWRLPDGAPVSVLRGHTGAVTAIAFSPRA----SSSDDGTCRIWD  298 (1113)
T ss_pred             hhhccCCCCccccchhccchhhhhhhhcccCceEEEEecCCCchHHHHhccccceeeeccCccc----cCCCCCceEecc
Confidence            8889999999999999999888899999999999999999999999999999999999999954    778999999999


Q ss_pred             CCC------------------------CCccEEEEEcCCCeEEEEecCCCc-----ee-eEEeccCC------ceeEEEE
Q 042146          171 AST------------------------PNGKFILVGTLDNTLRLWNYSTRK-----IL-KTYSGYTN------SKYCISS  214 (262)
Q Consensus       171 ~~~------------------------~~~~~l~~~~~dg~i~i~d~~~~~-----~~-~~~~~~~~------~~~~~~~  214 (262)
                      .+-                        .++.-+++++.|+.-..|.+....     ++ .+..+...      ...+...
T Consensus       299 ~r~~~~~y~prp~~~~~~~~~~s~~~~~~~~~f~Tgs~d~ea~n~e~~~l~~~~~~lif~t~ssd~~~~~~~ar~~~~~~  378 (1113)
T KOG0644|consen  299 ARLEPRIYVPRPLKFTEKDLVDSILFENNGDRFLTGSRDGEARNHEFEQLAWRSNLLIFVTRSSDLSSIVVTARNDHRLC  378 (1113)
T ss_pred             ccccccccCCCCCCcccccceeeeeccccccccccccCCcccccchhhHhhhhccceEEEeccccccccceeeeeeeEee
Confidence            882                        344566777777776666554211     11 01111000      1111122


Q ss_pred             EEecCCC---eeEEccccceEEEEEcCCCCeEE-EeeecCCCcEEEEeecc
Q 042146          215 TFSVTNG---KYIVSHRDPVISVASHPAKNIIA-SGALDNDRTMKIWTQEK  261 (262)
Q Consensus       215 ~~~~~~~---~~~~~~~~~v~~~~~~p~~~~l~-~~~~d~d~~i~iw~~~~  261 (262)
                      .+....+   ....+|...+..+.+||-...++ +++  .||...|||+-+
T Consensus       379 vwnl~~g~l~H~l~ghsd~~yvLd~Hpfn~ri~msag--~dgst~iwdi~e  427 (1113)
T KOG0644|consen  379 VWNLYTGQLLHNLMGHSDEVYVLDVHPFNPRIAMSAG--YDGSTIIWDIWE  427 (1113)
T ss_pred             eeecccchhhhhhcccccceeeeeecCCCcHhhhhcc--CCCceEeeeccc
Confidence            2222222   23344889999999999777665 666  899999999853

>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.84  E-value=1.2e-20  Score=157.30  Aligned_cols=207  Identities=23%  Similarity=0.381  Sum_probs=155.3

Q ss_pred             CCCCCceeeecc--------cccceecccCcCceEEEEEccCCCe----EEEecCCCeEEEeecCCCCCCCCCCCCCCcc
Q 042146            1 MSSDRSLESFRP--------YTLTQTLNGHLRAVSYVKFSHDGRL----LTSSSAEKTLLTYSLSSISNFDSTPPSPLQK   68 (262)
Q Consensus         1 ~s~d~~i~~~~~--------~~~~~~~~~h~~~v~~~~~~~~~~~----l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~   68 (262)
                      ||.+.+++.|..        .+++..+. -...-+.++|.+.+..    ||.|.+||.|.+||.....            
T Consensus        35 fst~~slEifeld~~~~~~dlk~~~s~~-s~~rF~kL~W~~~g~~~~GlIaGG~edG~I~ly~p~~~~------------  101 (1049)
T KOG0307|consen   35 FSTSASLEIFELDFSDESSDLKPVGSLQ-SSNRFNKLAWGSYGSHSHGLIAGGLEDGNIVLYDPASII------------  101 (1049)
T ss_pred             cccccccceeeecccCcccccccccccc-ccccceeeeecccCCCccceeeccccCCceEEecchhhc------------
Confidence            455667776641        12333332 3456789999997765    8889999999999875420            


Q ss_pred             ccCCccccccceeEEEEecCCCccceecccCCcceEEEEEeC-CCCEEEeecCCCeEEEEECCCCeeeeee--ecCCCCe
Q 042146           69 FTGHEQGISDLATIRLWDVPTATSLKTLIGHTNYVFCINFNP-QSNRIVSDTFNETIRIWDIKTGKCLKVL--PAHSDPV  145 (262)
Q Consensus        69 ~~~~~~~v~~~~~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~dg~i~vwd~~~~~~~~~~--~~~~~~v  145 (262)
                                       .-.....+.+...|.+.|..+.|++ .+++|++|+.||.|.|||+..-+.-...  ....+.|
T Consensus       102 -----------------~~~~~~~la~~~~h~G~V~gLDfN~~q~nlLASGa~~geI~iWDlnn~~tP~~~~~~~~~~eI  164 (1049)
T KOG0307|consen  102 -----------------ANASEEVLATKSKHTGPVLGLDFNPFQGNLLASGADDGEILIWDLNKPETPFTPGSQAPPSEI  164 (1049)
T ss_pred             -----------------cCcchHHHhhhcccCCceeeeeccccCCceeeccCCCCcEEEeccCCcCCCCCCCCCCCcccc
Confidence                             0012345667788999999999999 5559999999999999999875433333  1245689


Q ss_pred             eeEEEcc-CCCEEEEEeCCCeEEEEeCCC----------------------C-CccEEEEEcCCC---eEEEEecCCC-c
Q 042146          146 TAIDFNR-DGTMIVTSSYDGLYRILDAST----------------------P-NGKFILVGTLDN---TLRLWNYSTR-K  197 (262)
Q Consensus       146 ~~~~~~~-~~~~l~~~~~dg~i~~~d~~~----------------------~-~~~~l~~~~~dg---~i~i~d~~~~-~  197 (262)
                      .+++|.. ....|++++.+|++.+||+|.                      | +...+++++.|.   .|.+||+|.- .
T Consensus       165 ~~lsWNrkvqhILAS~s~sg~~~iWDlr~~~pii~ls~~~~~~~~S~l~WhP~~aTql~~As~dd~~PviqlWDlR~ass  244 (1049)
T KOG0307|consen  165 KCLSWNRKVSHILASGSPSGRAVIWDLRKKKPIIKLSDTPGRMHCSVLAWHPDHATQLLVASGDDSAPVIQLWDLRFASS  244 (1049)
T ss_pred             eEeccchhhhHHhhccCCCCCceeccccCCCcccccccCCCccceeeeeeCCCCceeeeeecCCCCCceeEeecccccCC
Confidence            9999987 456789999999999999997                      2 334566666553   7999999863 4


Q ss_pred             eeeEEeccCCceeEEEEEEecCCCeeEEccccceEEEEEcCCC-CeEEEeeecCCCcEEEEeecc
Q 042146          198 ILKTYSGYTNSKYCISSTFSVTNGKYIVSHRDPVISVASHPAK-NIIASGALDNDRTMKIWTQEK  261 (262)
Q Consensus       198 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~-~~l~~~~~d~d~~i~iw~~~~  261 (262)
                      +++++.+                      |...|.++.|++.+ .+|++++  .|+.|.+|+.+.
T Consensus       245 P~k~~~~----------------------H~~GilslsWc~~D~~lllSsg--kD~~ii~wN~~t  285 (1049)
T KOG0307|consen  245 PLKILEG----------------------HQRGILSLSWCPQDPRLLLSSG--KDNRIICWNPNT  285 (1049)
T ss_pred             chhhhcc----------------------cccceeeeccCCCCchhhhccc--CCCCeeEecCCC
Confidence            6666665                      99999999999977 7888998  899999999874

>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]

Probab=99.84  E-value=2.7e-19  Score=137.38  Aligned_cols=179  Identities=19%  Similarity=0.326  Sum_probs=141.6

Q ss_pred             Cceeee--cccccceecccCcCceEEEEEccCCCeEEEecCCCeEEEeecCCCCCCCCCCCCCCccccCCccccccceeE
Q 042146            5 RSLESF--RPYTLTQTLNGHLRAVSYVKFSHDGRLLTSSSAEKTLLTYSLSSISNFDSTPPSPLQKFTGHEQGISDLATI   82 (262)
Q Consensus         5 ~~i~~~--~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~i   82 (262)
                      +.+++|  +.-...+.+++|+..|+++.++-...|||+++..|-|.|..+.                             
T Consensus       101 ~~Vkiwdl~~kl~hr~lkdh~stvt~v~YN~~DeyiAsvs~gGdiiih~~~-----------------------------  151 (673)
T KOG4378|consen  101 GCVKIWDLRAKLIHRFLKDHQSTVTYVDYNNTDEYIASVSDGGDIIIHGTK-----------------------------  151 (673)
T ss_pred             ceeeehhhHHHHHhhhccCCcceeEEEEecCCcceeEEeccCCcEEEEecc-----------------------------
Confidence            445555  4444667789999999999999999999999999998888553                             


Q ss_pred             EEEecCCCccceecccC-CcceEEEEEeCCCCE-EEeecCCCeEEEEECCCCeeeeee-ecCCCCeeeEEEcc-CCCEEE
Q 042146           83 RLWDVPTATSLKTLIGH-TNYVFCINFNPQSNR-IVSDTFNETIRIWDIKTGKCLKVL-PAHSDPVTAIDFNR-DGTMIV  158 (262)
Q Consensus        83 ~v~d~~~~~~~~~~~~~-~~~v~~~~~~~~~~~-l~~~~~dg~i~vwd~~~~~~~~~~-~~~~~~v~~~~~~~-~~~~l~  158 (262)
                            ++....++... ...|.-+.++|..+. |.+++.+|.|.+||+....++..+ ..|..+...++|+| +..+|+
T Consensus       152 ------t~~~tt~f~~~sgqsvRll~ys~skr~lL~~asd~G~VtlwDv~g~sp~~~~~~~HsAP~~gicfspsne~l~v  225 (673)
T KOG4378|consen  152 ------TKQKTTTFTIDSGQSVRLLRYSPSKRFLLSIASDKGAVTLWDVQGMSPIFHASEAHSAPCRGICFSPSNEALLV  225 (673)
T ss_pred             ------cCccccceecCCCCeEEEeecccccceeeEeeccCCeEEEEeccCCCcccchhhhccCCcCcceecCCccceEE
Confidence                  33333344322 344568899996654 668899999999999877766554 67999999999999 566899


Q ss_pred             EEeCCCeEEEEeCCC-------------------CCccEEEEEcCCCeEEEEecCCC-ceeeEEeccCCceeEEEEEEec
Q 042146          159 TSSYDGLYRILDAST-------------------PNGKFILVGTLDNTLRLWNYSTR-KILKTYSGYTNSKYCISSTFSV  218 (262)
Q Consensus       159 ~~~~dg~i~~~d~~~-------------------~~~~~l~~~~~dg~i~i~d~~~~-~~~~~~~~~~~~~~~~~~~~~~  218 (262)
                      +.+.|..|.+||.++                   ++|.+|++|+..|.|..||++.. .++..+..              
T Consensus       226 sVG~Dkki~~yD~~s~~s~~~l~y~~Plstvaf~~~G~~L~aG~s~G~~i~YD~R~~k~Pv~v~sa--------------  291 (673)
T KOG4378|consen  226 SVGYDKKINIYDIRSQASTDRLTYSHPLSTVAFSECGTYLCAGNSKGELIAYDMRSTKAPVAVRSA--------------  291 (673)
T ss_pred             EecccceEEEeecccccccceeeecCCcceeeecCCceEEEeecCCceEEEEecccCCCCceEeee--------------
Confidence            999999999999987                   79999999999999999999964 56777766              


Q ss_pred             CCCeeEEccccceEEEEEcCCC
Q 042146          219 TNGKYIVSHRDPVISVASHPAK  240 (262)
Q Consensus       219 ~~~~~~~~~~~~v~~~~~~p~~  240 (262)
                              |...|++++|-|..
T Consensus       292 --------h~~sVt~vafq~s~  305 (673)
T KOG4378|consen  292 --------HDASVTRVAFQPSP  305 (673)
T ss_pred             --------cccceeEEEeeecc
Confidence                    66667777776654

>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.84  E-value=2e-19  Score=135.22  Aligned_cols=175  Identities=22%  Similarity=0.365  Sum_probs=140.8

Q ss_pred             EEEEEccCCCeEEEecCCCeEEEeecCCCCCCCCCCCCCCccccCCccccccceeEEEEecCCCccceecccCCcceEEE
Q 042146           27 SYVKFSHDGRLLTSSSAEKTLLTYSLSSISNFDSTPPSPLQKFTGHEQGISDLATIRLWDVPTATSLKTLIGHTNYVFCI  106 (262)
Q Consensus        27 ~~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~i~v~d~~~~~~~~~~~~~~~~v~~~  106 (262)
                      .+++|+++|..|++|+.||++|+|+.                                   .+...+.....|...|.++
T Consensus       148 k~vaf~~~gs~latgg~dg~lRv~~~-----------------------------------Ps~~t~l~e~~~~~eV~DL  192 (398)
T KOG0771|consen  148 KVVAFNGDGSKLATGGTDGTLRVWEW-----------------------------------PSMLTILEEIAHHAEVKDL  192 (398)
T ss_pred             eEEEEcCCCCEeeeccccceEEEEec-----------------------------------CcchhhhhhHhhcCccccc
Confidence            78999999999999999999998853                                   3445556667789999999


Q ss_pred             EEeCCCCEEEeecCCCeEEEEECCCCeeeeeeec--CCCCeeeEEEccCC---CE--EEEEeCCCeEEEEeCCC------
Q 042146          107 NFNPQSNRIVSDTFNETIRIWDIKTGKCLKVLPA--HSDPVTAIDFNRDG---TM--IVTSSYDGLYRILDAST------  173 (262)
Q Consensus       107 ~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~--~~~~v~~~~~~~~~---~~--l~~~~~dg~i~~~d~~~------  173 (262)
                      .|+||+++|++.+.| ..+||+.+++.++.....  .......+.|+.++   .+  ++....-+.|+.||+..      
T Consensus       193 ~FS~dgk~lasig~d-~~~VW~~~~g~~~a~~t~~~k~~~~~~cRF~~d~~~~~l~laa~~~~~~~v~~~~~~~w~~~~~  271 (398)
T KOG0771|consen  193 DFSPDGKFLASIGAD-SARVWSVNTGAALARKTPFSKDEMFSSCRFSVDNAQETLRLAASQFPGGGVRLCDISLWSGSNF  271 (398)
T ss_pred             eeCCCCcEEEEecCC-ceEEEEeccCchhhhcCCcccchhhhhceecccCCCceEEEEEecCCCCceeEEEeeeeccccc
Confidence            999999999999999 999999999977666542  23456778888876   33  33333455666655432      


Q ss_pred             -------------------CCccEEEEEcCCCeEEEEecCCCceeeEEeccCCceeEEEEEEecCCCeeEEccccceEEE
Q 042146          174 -------------------PNGKFILVGTLDNTLRLWNYSTRKILKTYSGYTNSKYCISSTFSVTNGKYIVSHRDPVISV  234 (262)
Q Consensus       174 -------------------~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~  234 (262)
                                         .+|++++.|+.||.|-|++..+.+.++.++..                     |..-|+.+
T Consensus       272 l~~~~~~~~~~siSsl~VS~dGkf~AlGT~dGsVai~~~~~lq~~~~vk~a---------------------H~~~VT~l  330 (398)
T KOG0771|consen  272 LRLRKKIKRFKSISSLAVSDDGKFLALGTMDGSVAIYDAKSLQRLQYVKEA---------------------HLGFVTGL  330 (398)
T ss_pred             cchhhhhhccCcceeEEEcCCCcEEEEeccCCcEEEEEeceeeeeEeehhh---------------------heeeeeeE
Confidence                               79999999999999999999988877776542                     88999999


Q ss_pred             EEcCCCCeEEEeeecCCCcEEEEeec
Q 042146          235 ASHPAKNIIASGALDNDRTMKIWTQE  260 (262)
Q Consensus       235 ~~~p~~~~l~~~~~d~d~~i~iw~~~  260 (262)
                      .|+|+.+++++.+  .|..+.|..+.
T Consensus       331 tF~Pdsr~~~svS--s~~~~~v~~l~  354 (398)
T KOG0771|consen  331 TFSPDSRYLASVS--SDNEAAVTKLA  354 (398)
T ss_pred             EEcCCcCcccccc--cCCceeEEEEe
Confidence            9999999999988  77888887664

>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]

Probab=99.83  E-value=4.3e-19  Score=147.21  Aligned_cols=236  Identities=18%  Similarity=0.305  Sum_probs=166.1

Q ss_pred             eeeecccccceecccC---cCceEEEEEcc--CCCeEEEecCCCeEEEeecCCCC--CCCC------CC--------CCC
Q 042146            7 LESFRPYTLTQTLNGH---LRAVSYVKFSH--DGRLLTSSSAEKTLLTYSLSSIS--NFDS------TP--------PSP   65 (262)
Q Consensus         7 i~~~~~~~~~~~~~~h---~~~v~~~~~~~--~~~~l~s~~~d~~i~iw~~~~~~--~~~~------~~--------~~~   65 (262)
                      ++.|+..+....|..+   ...|+.+.+-.  |..++++|+.||.|+||+-....  ....      ..        ...
T Consensus      1090 vwd~e~~~~l~~F~n~~~~~t~Vs~l~liNe~D~aLlLtas~dGvIRIwk~y~~~~~~~eLVTaw~~Ls~~~~~~r~~~~ 1169 (1387)
T KOG1517|consen 1090 VWDWEKGRLLNGFDNGAFPDTRVSDLELINEQDDALLLTASSDGVIRIWKDYADKWKKPELVTAWSSLSDQLPGARGTGL 1169 (1387)
T ss_pred             EEecccCceeccccCCCCCCCccceeeeecccchhheeeeccCceEEEecccccccCCceeEEeeccccccCccCCCCCe
Confidence            4555556665555543   45688888854  45689999999999999743321  0000      00        001


Q ss_pred             CccccCCcccc---ccceeEEEEecCCCccceeccc-CCcceEEEEEeC-CCCEEEeecCCCeEEEEECCCC---eeeee
Q 042146           66 LQKFTGHEQGI---SDLATIRLWDVPTATSLKTLIG-HTNYVFCINFNP-QSNRIVSDTFNETIRIWDIKTG---KCLKV  137 (262)
Q Consensus        66 ~~~~~~~~~~v---~~~~~i~v~d~~~~~~~~~~~~-~~~~v~~~~~~~-~~~~l~~~~~dg~i~vwd~~~~---~~~~~  137 (262)
                      +..+....+..   .....|+|||.+....+..+.. ....|+++.-+. .|+.+++|..||.|++||.+..   ..+..
T Consensus      1170 v~dWqQ~~G~Ll~tGd~r~IRIWDa~~E~~~~diP~~s~t~vTaLS~~~~~gn~i~AGfaDGsvRvyD~R~a~~ds~v~~ 1249 (1387)
T KOG1517|consen 1170 VVDWQQQSGHLLVTGDVRSIRIWDAHKEQVVADIPYGSSTLVTALSADLVHGNIIAAGFADGSVRVYDRRMAPPDSLVCV 1249 (1387)
T ss_pred             eeehhhhCCeEEecCCeeEEEEEecccceeEeecccCCCccceeecccccCCceEEEeecCCceEEeecccCCcccccee
Confidence            11111111111   1133899999998877776653 334577776554 5799999999999999998754   34666


Q ss_pred             eecCCCC--eeeEEEccCCC-EEEEEeCCCeEEEEeCCC-------------------------CCccEEEEEcCCCeEE
Q 042146          138 LPAHSDP--VTAIDFNRDGT-MIVTSSYDGLYRILDAST-------------------------PNGKFILVGTLDNTLR  189 (262)
Q Consensus       138 ~~~~~~~--v~~~~~~~~~~-~l~~~~~dg~i~~~d~~~-------------------------~~~~~l~~~~~dg~i~  189 (262)
                      .+.|+..  |..+.+.+.|- .|++|+.||.|++||+|.                         +..+.+++|+. +.|.
T Consensus      1250 ~R~h~~~~~Iv~~slq~~G~~elvSgs~~G~I~~~DlR~~~~e~~~~iv~~~~yGs~lTal~VH~hapiiAsGs~-q~ik 1328 (1387)
T KOG1517|consen 1250 YREHNDVEPIVHLSLQRQGLGELVSGSQDGDIQLLDLRMSSKETFLTIVAHWEYGSALTALTVHEHAPIIASGSA-QLIK 1328 (1387)
T ss_pred             ecccCCcccceeEEeecCCCcceeeeccCCeEEEEecccCcccccceeeeccccCccceeeeeccCCCeeeecCc-ceEE
Confidence            7788876  99999999765 599999999999999997                         34567888887 9999


Q ss_pred             EEecCCCceeeEEeccCCceeEEEEEEecCCCeeEEccccceEEEEEcCCCCeEEEeeecCCCcEEEEeecc
Q 042146          190 LWNYSTRKILKTYSGYTNSKYCISSTFSVTNGKYIVSHRDPVISVASHPAKNIIASGALDNDRTMKIWTQEK  261 (262)
Q Consensus       190 i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~d~d~~i~iw~~~~  261 (262)
                      ||++. |+.+..++.+               ..++....+.+.|++|||...++|+|+  .|..|.||..++
T Consensus      1329 Iy~~~-G~~l~~~k~n---------------~~F~~q~~gs~scL~FHP~~~llAaG~--~Ds~V~iYs~~k 1382 (1387)
T KOG1517|consen 1329 IYSLS-GEQLNIIKYN---------------PGFMGQRIGSVSCLAFHPHRLLLAAGS--ADSTVSIYSCEK 1382 (1387)
T ss_pred             EEecC-hhhhcccccC---------------cccccCcCCCcceeeecchhHhhhhcc--CCceEEEeecCC
Confidence            99986 6666666532               112222556789999999999999998  899999998765

>KOG2048 consensus WD40 repeat protein [General function prediction only]

Probab=99.83  E-value=2.4e-18  Score=136.41  Aligned_cols=166  Identities=15%  Similarity=0.204  Sum_probs=115.0

Q ss_pred             CCCceeeeccc----ccceecccCcCceEEEEEccCCCeEEEecCCCeEEEeecCCCCCCC-------CCCC-CCCccc-
Q 042146            3 SDRSLESFRPY----TLTQTLNGHLRAVSYVKFSHDGRLLTSSSAEKTLLTYSLSSISNFD-------STPP-SPLQKF-   69 (262)
Q Consensus         3 ~d~~i~~~~~~----~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~-------~~~~-~~~~~~-   69 (262)
                      .||.+..+.-.    +....|...++.|.+++|+|++..+++|+.||.|++||........       .... .+...+ 
T Consensus       130 ddGvl~~~s~~p~~I~~~r~l~rq~sRvLslsw~~~~~~i~~Gs~Dg~Iriwd~~~~~t~~~~~~~~d~l~k~~~~iVWS  209 (691)
T KOG2048|consen  130 DDGVLYDFSIGPDKITYKRSLMRQKSRVLSLSWNPTGTKIAGGSIDGVIRIWDVKSGQTLHIITMQLDRLSKREPTIVWS  209 (691)
T ss_pred             CCceEEEEecCCceEEEEeecccccceEEEEEecCCccEEEecccCceEEEEEcCCCceEEEeeecccccccCCceEEEE
Confidence            46666666522    2334455567899999999999999999999999999987654322       1111 111111 


Q ss_pred             -cC-Cc---cccccceeEEEEecCCCccceecccCCcceEEEEEeCCCCEEEeecCCCeEEEEECCCCeee----eeeec
Q 042146           70 -TG-HE---QGISDLATIRLWDVPTATSLKTLIGHTNYVFCINFNPQSNRIVSDTFNETIRIWDIKTGKCL----KVLPA  140 (262)
Q Consensus        70 -~~-~~---~~v~~~~~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~----~~~~~  140 (262)
                       .. ..   ....+.+.|++||...+..++.+..|.+.|.+++..++++++++++.|+.|..|...+++..    .....
T Consensus       210 v~~Lrd~tI~sgDS~G~V~FWd~~~gTLiqS~~~h~adVl~Lav~~~~d~vfsaGvd~~ii~~~~~~~~~~wv~~~~r~~  289 (691)
T KOG2048|consen  210 VLFLRDSTIASGDSAGTVTFWDSIFGTLIQSHSCHDADVLALAVADNEDRVFSAGVDPKIIQYSLTTNKSEWVINSRRDL  289 (691)
T ss_pred             EEEeecCcEEEecCCceEEEEcccCcchhhhhhhhhcceeEEEEcCCCCeEEEccCCCceEEEEecCCccceeeeccccC
Confidence             11 11   11223348999999999999999999999999999999999999999999999987665331    12234


Q ss_pred             CCCCeeeEEEccCCCEEEEEeCCCeEEEEe
Q 042146          141 HSDPVTAIDFNRDGTMIVTSSYDGLYRILD  170 (262)
Q Consensus       141 ~~~~v~~~~~~~~~~~l~~~~~dg~i~~~d  170 (262)
                      |...|.+++..++  .+++|+.|.++.+-.
T Consensus       290 h~hdvrs~av~~~--~l~sgG~d~~l~i~~  317 (691)
T KOG2048|consen  290 HAHDVRSMAVIEN--ALISGGRDFTLAICS  317 (691)
T ss_pred             Ccccceeeeeecc--eEEecceeeEEEEcc
Confidence            5666666666654  566666666655544

>KOG4227 consensus WD40 repeat protein [General function prediction only]

Probab=99.83  E-value=3.2e-19  Score=133.48  Aligned_cols=127  Identities=17%  Similarity=0.272  Sum_probs=106.0

Q ss_pred             eecccCcCceEEEEEccCCCeEEEecCCCeEEEeecCCCCCCCCCCCCCCccccCCccccccceeEEEEecCCCccceec
Q 042146           17 QTLNGHLRAVSYVKFSHDGRLLTSSSAEKTLLTYSLSSISNFDSTPPSPLQKFTGHEQGISDLATIRLWDVPTATSLKTL   96 (262)
Q Consensus        17 ~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~i~v~d~~~~~~~~~~   96 (262)
                      +-+.+|.+.|+++.|+.++++|++|+.|..+++|+++..-.                             ..+.+++...
T Consensus        50 KD~~~H~GCiNAlqFS~N~~~L~SGGDD~~~~~W~~de~~~-----------------------------~k~~KPI~~~  100 (609)
T KOG4227|consen   50 KDVREHTGCINALQFSHNDRFLASGGDDMHGRVWNVDELMV-----------------------------RKTPKPIGVM  100 (609)
T ss_pred             hhhhhhccccceeeeccCCeEEeecCCcceeeeechHHHHh-----------------------------hcCCCCceec
Confidence            34568999999999999999999999999999998764110                             1123444433


Q ss_pred             c-cCCcceEEEEEeCCCCEEEeecCCCeEEEEECCCCeeeeeeecCC---CCeeeEEEccCCCEEEEEeCCCeEEEEeCC
Q 042146           97 I-GHTNYVFCINFNPQSNRIVSDTFNETIRIWDIKTGKCLKVLPAHS---DPVTAIDFNRDGTMIVTSSYDGLYRILDAS  172 (262)
Q Consensus        97 ~-~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~---~~v~~~~~~~~~~~l~~~~~dg~i~~~d~~  172 (262)
                      . .|...|.|++|+...+++++|..+++|...|+++.+.+..+. |.   +.|..+..+|..+.|++.+.++.|.+||.+
T Consensus       101 ~~~H~SNIF~L~F~~~N~~~~SG~~~~~VI~HDiEt~qsi~V~~-~~~~~~~VY~m~~~P~DN~~~~~t~~~~V~~~D~R  179 (609)
T KOG4227|consen  101 EHPHRSNIFSLEFDLENRFLYSGERWGTVIKHDIETKQSIYVAN-ENNNRGDVYHMDQHPTDNTLIVVTRAKLVSFIDNR  179 (609)
T ss_pred             cCccccceEEEEEccCCeeEecCCCcceeEeeecccceeeeeec-ccCcccceeecccCCCCceEEEEecCceEEEEecc
Confidence            3 355899999999999999999999999999999998888774 44   489999999999999999999999999988


Q ss_pred             C
Q 042146          173 T  173 (262)
Q Consensus       173 ~  173 (262)
                      .
T Consensus       180 d  180 (609)
T KOG4227|consen  180 D  180 (609)
T ss_pred             C
Confidence            6

>KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown]

Probab=99.83  E-value=5.7e-19  Score=127.01  Aligned_cols=223  Identities=21%  Similarity=0.291  Sum_probs=149.9

Q ss_pred             cccceecc-cCcCceEEEEEccCCCeEEEecCCCeEEEeecCCCCCC-CCC----CCCCCcc-----ccC-C---ccccc
Q 042146           13 YTLTQTLN-GHLRAVSYVKFSHDGRLLTSSSAEKTLLTYSLSSISNF-DST----PPSPLQK-----FTG-H---EQGIS   77 (262)
Q Consensus        13 ~~~~~~~~-~h~~~v~~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~-~~~----~~~~~~~-----~~~-~---~~~v~   77 (262)
                      ...+..+. .+-+.|.|+.|.|++..+|+-. |..|.+|++++.... ...    .......     +.. |   .....
T Consensus       112 lE~v~~Ldteavg~i~cvew~Pns~klasm~-dn~i~l~~l~ess~~vaev~ss~s~e~~~~ftsg~WspHHdgnqv~tt  190 (370)
T KOG1007|consen  112 LECVASLDTEAVGKINCVEWEPNSDKLASMD-DNNIVLWSLDESSKIVAEVLSSESAEMRHSFTSGAWSPHHDGNQVATT  190 (370)
T ss_pred             hhHhhcCCHHHhCceeeEEEcCCCCeeEEec-cCceEEEEcccCcchheeecccccccccceecccccCCCCccceEEEe
Confidence            44455554 5667899999999999999877 899999999876542 111    1111111     112 2   12234


Q ss_pred             cceeEEEEecCCCccceec-ccCCcceEEEEEeCCCC-EEEeecCCCeEEEEECCC-CeeeeeeecCCCCeeeEEEcc-C
Q 042146           78 DLATIRLWDVPTATSLKTL-IGHTNYVFCINFNPQSN-RIVSDTFNETIRIWDIKT-GKCLKVLPAHSDPVTAIDFNR-D  153 (262)
Q Consensus        78 ~~~~i~v~d~~~~~~~~~~-~~~~~~v~~~~~~~~~~-~l~~~~~dg~i~vwd~~~-~~~~~~~~~~~~~v~~~~~~~-~  153 (262)
                      ...++..||+++..+...+ ..|...|..+.|+|+.+ +|++++.||.|++||.+. ..++.++.+|...|.++.|+| .
T Consensus       191 ~d~tl~~~D~RT~~~~~sI~dAHgq~vrdlDfNpnkq~~lvt~gDdgyvriWD~R~tk~pv~el~~HsHWvW~VRfn~~h  270 (370)
T KOG1007|consen  191 SDSTLQFWDLRTMKKNNSIEDAHGQRVRDLDFNPNKQHILVTCGDDGYVRIWDTRKTKFPVQELPGHSHWVWAVRFNPEH  270 (370)
T ss_pred             CCCcEEEEEccchhhhcchhhhhcceeeeccCCCCceEEEEEcCCCccEEEEeccCCCccccccCCCceEEEEEEecCcc
Confidence            4459999999987766554 46889999999999765 578999999999999985 457889999999999999999 4


Q ss_pred             CCEEEEEeCCCeEEEEeCCCCC-ccEEEEEcCCCeEEEEecCC------CceeeEEeccCCceeEEEEEEecCCCeeEEc
Q 042146          154 GTMIVTSSYDGLYRILDASTPN-GKFILVGTLDNTLRLWNYST------RKILKTYSGYTNSKYCISSTFSVTNGKYIVS  226 (262)
Q Consensus       154 ~~~l~~~~~dg~i~~~d~~~~~-~~~l~~~~~dg~i~i~d~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  226 (262)
                      ..++++++.|..|.+|...+.. ...+..+.....-..=|.+.      ...+.++..                      
T Consensus       271 dqLiLs~~SDs~V~Lsca~svSSE~qi~~~~dese~e~~dseer~kpL~dg~l~tyde----------------------  328 (370)
T KOG1007|consen  271 DQLILSGGSDSAVNLSCASSVSSEQQIEFEDDESESEDEDSEERVKPLQDGQLETYDE----------------------  328 (370)
T ss_pred             ceEEEecCCCceeEEEeccccccccccccccccccCcchhhHHhcccccccccccccc----------------------
Confidence            5678899999999888766521 11111111110000000000      011122222                      


Q ss_pred             cccceEEEEEcCCCCe-EEEeeecCCCcEEEEeec
Q 042146          227 HRDPVISVASHPAKNI-IASGALDNDRTMKIWTQE  260 (262)
Q Consensus       227 ~~~~v~~~~~~p~~~~-l~~~~~d~d~~i~iw~~~  260 (262)
                      |++.|.+++|+.-.+. +|+-+  .||.+.|=++.
T Consensus       329 hEDSVY~~aWSsadPWiFASLS--YDGRviIs~V~  361 (370)
T KOG1007|consen  329 HEDSVYALAWSSADPWIFASLS--YDGRVIISSVP  361 (370)
T ss_pred             cccceEEEeeccCCCeeEEEec--cCceEEeecCC
Confidence            9999999999987765 55667  89999876654

>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]

Probab=99.83  E-value=1.6e-19  Score=142.68  Aligned_cols=124  Identities=21%  Similarity=0.381  Sum_probs=107.2

Q ss_pred             CcCceEEEEEcc-CCCeEEEecCCCeEEEeecCCCCCCCCCCCCCCccccCCccccccceeEEEEecCCCccceecccCC
Q 042146           22 HLRAVSYVKFSH-DGRLLTSSSAEKTLLTYSLSSISNFDSTPPSPLQKFTGHEQGISDLATIRLWDVPTATSLKTLIGHT  100 (262)
Q Consensus        22 h~~~v~~~~~~~-~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~i~v~d~~~~~~~~~~~~~~  100 (262)
                      ....|+.+.|.| |...||+++.||.|++|.+......+                            ....+...+..|.
T Consensus       626 Ngt~vtDl~WdPFD~~rLAVa~ddg~i~lWr~~a~gl~e----------------------------~~~tPe~~lt~h~  677 (1012)
T KOG1445|consen  626 NGTLVTDLHWDPFDDERLAVATDDGQINLWRLTANGLPE----------------------------NEMTPEKILTIHG  677 (1012)
T ss_pred             cCceeeecccCCCChHHeeecccCceEEEEEeccCCCCc----------------------------ccCCcceeeeccc
Confidence            346699999999 67789999999999999876422110                            1234555677899


Q ss_pred             cceEEEEEeC-CCCEEEeecCCCeEEEEECCCCeeeeeeecCCCCeeeEEEccCCCEEEEEeCCCeEEEEeCCC
Q 042146          101 NYVFCINFNP-QSNRIVSDTFNETIRIWDIKTGKCLKVLPAHSDPVTAIDFNRDGTMIVTSSYDGLYRILDAST  173 (262)
Q Consensus       101 ~~v~~~~~~~-~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~d~~~  173 (262)
                      ..|+++.|+| -.+.|++++.|-+|++||+++++....+.+|.+.|..++|+|+|+.+++.+.||+|++|..++
T Consensus       678 eKI~slRfHPLAadvLa~asyd~Ti~lWDl~~~~~~~~l~gHtdqIf~~AWSpdGr~~AtVcKDg~~rVy~Prs  751 (1012)
T KOG1445|consen  678 EKITSLRFHPLAADVLAVASYDSTIELWDLANAKLYSRLVGHTDQIFGIAWSPDGRRIATVCKDGTLRVYEPRS  751 (1012)
T ss_pred             ceEEEEEecchhhhHhhhhhccceeeeeehhhhhhhheeccCcCceeEEEECCCCcceeeeecCceEEEeCCCC
Confidence            9999999999 677899999999999999999999899999999999999999999999999999999999887

>KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown]

Probab=99.82  E-value=1.6e-18  Score=124.66  Aligned_cols=194  Identities=18%  Similarity=0.317  Sum_probs=139.3

Q ss_pred             cceecccCcCceEEEEEccCC-CeEEEecCC-------CeEEEeecCCCCCCCCCCCCCCccccCCccccccceeEEEEe
Q 042146           15 LTQTLNGHLRAVSYVKFSHDG-RLLTSSSAE-------KTLLTYSLSSISNFDSTPPSPLQKFTGHEQGISDLATIRLWD   86 (262)
Q Consensus        15 ~~~~~~~h~~~v~~~~~~~~~-~~l~s~~~d-------~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~i~v~d   86 (262)
                      ....|..|.+.|..++-+|-. +.|+|+-.+       -.+.||.+.......                          +
T Consensus        55 ~skvf~h~agEvw~las~P~d~~ilaT~yn~~s~s~vl~~aaiw~ipe~~~~S--------------------------~  108 (370)
T KOG1007|consen   55 LSKVFFHHAGEVWDLASSPFDQRILATVYNDTSDSGVLTGAAIWQIPEPLGQS--------------------------N  108 (370)
T ss_pred             hhhhhhcCCcceehhhcCCCCCceEEEEEeccCCCcceeeEEEEecccccCcc--------------------------c
Confidence            445667788999999999954 455555432       135566554311100                          0


Q ss_pred             cCCCccceecc-cCCcceEEEEEeCCCCEEEeecCCCeEEEEECCCCee-eeeee-----cCCCCeeeEEEcc--CCCEE
Q 042146           87 VPTATSLKTLI-GHTNYVFCINFNPQSNRIVSDTFNETIRIWDIKTGKC-LKVLP-----AHSDPVTAIDFNR--DGTMI  157 (262)
Q Consensus        87 ~~~~~~~~~~~-~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~-~~~~~-----~~~~~v~~~~~~~--~~~~l  157 (262)
                      ..+.+++..+. .+-+.|.|+.|.|++..+++-. |..|.+|++..+.. +..+.     .+....++-+|+|  +++.+
T Consensus       109 ~~tlE~v~~Ldteavg~i~cvew~Pns~klasm~-dn~i~l~~l~ess~~vaev~ss~s~e~~~~ftsg~WspHHdgnqv  187 (370)
T KOG1007|consen  109 SSTLECVASLDTEAVGKINCVEWEPNSDKLASMD-DNNIVLWSLDESSKIVAEVLSSESAEMRHSFTSGAWSPHHDGNQV  187 (370)
T ss_pred             cchhhHhhcCCHHHhCceeeEEEcCCCCeeEEec-cCceEEEEcccCcchheeecccccccccceecccccCCCCccceE
Confidence            01233344444 3456899999999999998876 88999999987655 33332     2455788899999  66666


Q ss_pred             EEEeCCCeEEEEeCCC---------------------CC-ccEEEEEcCCCeEEEEecCC-CceeeEEeccCCceeEEEE
Q 042146          158 VTSSYDGLYRILDAST---------------------PN-GKFILVGTLDNTLRLWNYST-RKILKTYSGYTNSKYCISS  214 (262)
Q Consensus       158 ~~~~~dg~i~~~d~~~---------------------~~-~~~l~~~~~dg~i~i~d~~~-~~~~~~~~~~~~~~~~~~~  214 (262)
                      ++. .|+++..||+|+                     |+ ..+|++|+.||.|+|||.+. ..++.++.+          
T Consensus       188 ~tt-~d~tl~~~D~RT~~~~~sI~dAHgq~vrdlDfNpnkq~~lvt~gDdgyvriWD~R~tk~pv~el~~----------  256 (370)
T KOG1007|consen  188 ATT-SDSTLQFWDLRTMKKNNSIEDAHGQRVRDLDFNPNKQHILVTCGDDGYVRIWDTRKTKFPVQELPG----------  256 (370)
T ss_pred             EEe-CCCcEEEEEccchhhhcchhhhhcceeeeccCCCCceEEEEEcCCCccEEEEeccCCCccccccCC----------
Confidence            654 589999999998                     33 45788999999999999986 457777777          


Q ss_pred             EEecCCCeeEEccccceEEEEEcCC-CCeEEEeeecCCCcEEEEeec
Q 042146          215 TFSVTNGKYIVSHRDPVISVASHPA-KNIIASGALDNDRTMKIWTQE  260 (262)
Q Consensus       215 ~~~~~~~~~~~~~~~~v~~~~~~p~-~~~l~~~~~d~d~~i~iw~~~  260 (262)
                                  |...|.++.|+|. .+++.++|  .|..|.+|...
T Consensus       257 ------------HsHWvW~VRfn~~hdqLiLs~~--SDs~V~Lsca~  289 (370)
T KOG1007|consen  257 ------------HSHWVWAVRFNPEHDQLILSGG--SDSAVNLSCAS  289 (370)
T ss_pred             ------------CceEEEEEEecCccceEEEecC--CCceeEEEecc
Confidence                        8889999999996 45677888  89999998753

>KOG4328 consensus WD40 protein [Function unknown]

Probab=99.82  E-value=2.9e-19  Score=135.63  Aligned_cols=152  Identities=20%  Similarity=0.385  Sum_probs=120.6

Q ss_pred             ecCCCccceecccCCcceEEEEEeCCC--CEEEeecCCCeEEEEECCCC----eeeeeeecCCCCeeeEEEcc-CCCEEE
Q 042146           86 DVPTATSLKTLIGHTNYVFCINFNPQS--NRIVSDTFNETIRIWDIKTG----KCLKVLPAHSDPVTAIDFNR-DGTMIV  158 (262)
Q Consensus        86 d~~~~~~~~~~~~~~~~v~~~~~~~~~--~~l~~~~~dg~i~vwd~~~~----~~~~~~~~~~~~v~~~~~~~-~~~~l~  158 (262)
                      |+..-......+-+...|++++|+|..  +++++|...|.|-+||+.+.    .-+..+..|..+|.+|.|+| +..+++
T Consensus       172 ~l~~~~~~~v~kv~~~Rit~l~fHPt~~~~lva~GdK~G~VG~Wn~~~~~~d~d~v~~f~~hs~~Vs~l~F~P~n~s~i~  251 (498)
T KOG4328|consen  172 DLDDYRILNVAKVTDRRITSLAFHPTENRKLVAVGDKGGQVGLWNFGTQEKDKDGVYLFTPHSGPVSGLKFSPANTSQIY  251 (498)
T ss_pred             ccccceecceeEecccceEEEEecccCcceEEEEccCCCcEEEEecCCCCCccCceEEeccCCccccceEecCCChhhee
Confidence            333334444556688999999999944  57899999999999999633    23566778999999999999 567899


Q ss_pred             EEeCCCeEEEEeCCC-----------------------------------------------------------------
Q 042146          159 TSSYDGLYRILDAST-----------------------------------------------------------------  173 (262)
Q Consensus       159 ~~~~dg~i~~~d~~~-----------------------------------------------------------------  173 (262)
                      +.+.||+|++-|+..                                                                 
T Consensus       252 ssSyDGtiR~~D~~~~i~e~v~s~~~d~~~fs~~d~~~e~~~vl~~~~~G~f~~iD~R~~~s~~~~~~lh~kKI~sv~~N  331 (498)
T KOG4328|consen  252 SSSYDGTIRLQDFEGNISEEVLSLDTDNIWFSSLDFSAESRSVLFGDNVGNFNVIDLRTDGSEYENLRLHKKKITSVALN  331 (498)
T ss_pred             eeccCceeeeeeecchhhHHHhhcCccceeeeeccccCCCccEEEeecccceEEEEeecCCccchhhhhhhcccceeecC
Confidence            999999999999776                                                                 


Q ss_pred             -CCccEEEEEcCCCeEEEEecCCCceeeE--EeccCCceeEEEEEEecCCCeeEEccccceEEEEEcCCCCeEEEeeecC
Q 042146          174 -PNGKFILVGTLDNTLRLWNYSTRKILKT--YSGYTNSKYCISSTFSVTNGKYIVSHRDPVISVASHPAKNIIASGALDN  250 (262)
Q Consensus       174 -~~~~~l~~~~~dg~i~i~d~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~d~  250 (262)
                       ....+|++++.|++.+|||++....-..  +..                    ..|...|.+..|||.+..|+|.+  .
T Consensus       332 P~~p~~laT~s~D~T~kIWD~R~l~~K~sp~lst--------------------~~HrrsV~sAyFSPs~gtl~TT~--~  389 (498)
T KOG4328|consen  332 PVCPWFLATASLDQTAKIWDLRQLRGKASPFLST--------------------LPHRRSVNSAYFSPSGGTLLTTC--Q  389 (498)
T ss_pred             CCCchheeecccCcceeeeehhhhcCCCCcceec--------------------ccccceeeeeEEcCCCCceEeec--c
Confidence             2456789999999999999886432221  111                    11999999999999988899999  8


Q ss_pred             CCcEEEEee
Q 042146          251 DRTMKIWTQ  259 (262)
Q Consensus       251 d~~i~iw~~  259 (262)
                      |..|+|||.
T Consensus       390 D~~IRv~ds  398 (498)
T KOG4328|consen  390 DNEIRVFDS  398 (498)
T ss_pred             CCceEEeec
Confidence            999999997

>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]

Probab=99.82  E-value=6.1e-18  Score=125.40  Aligned_cols=193  Identities=18%  Similarity=0.284  Sum_probs=139.2

Q ss_pred             CceEEEEEccCCCeEEEecCC--CeEEEeecCCCCCC-CCCCCCCC--ccccCCccccccceeEEEEecCCCccceecc-
Q 042146           24 RAVSYVKFSHDGRLLTSSSAE--KTLLTYSLSSISNF-DSTPPSPL--QKFTGHEQGISDLATIRLWDVPTATSLKTLI-   97 (262)
Q Consensus        24 ~~v~~~~~~~~~~~l~s~~~d--~~i~iw~~~~~~~~-~~~~~~~~--~~~~~~~~~v~~~~~i~v~d~~~~~~~~~~~-   97 (262)
                      ..|--+-|+..  ++|..+.+  +.+++.++...... +..-+.++  ..+....--|.-...|+|+|+.+.+.+.++. 
T Consensus        47 ~~IvEmLFSSS--LvaiV~~~qpr~Lkv~~~Kk~~~ICe~~fpt~IL~VrmNr~RLvV~Lee~IyIydI~~MklLhTI~t  124 (391)
T KOG2110|consen   47 VSIVEMLFSSS--LVAIVSIKQPRKLKVVHFKKKTTICEIFFPTSILAVRMNRKRLVVCLEESIYIYDIKDMKLLHTIET  124 (391)
T ss_pred             eEEEEeecccc--eeEEEecCCCceEEEEEcccCceEEEEecCCceEEEEEccceEEEEEcccEEEEecccceeehhhhc
Confidence            33555556544  44444433  45888876542211 01111111  1222222223333379999999998888764 


Q ss_pred             --cCCcceEEEEEeCCCCEEEe--ecCCCeEEEEECCCCeeeeeeecCCCCeeeEEEccCCCEEEEEeCCCeEEEEeCCC
Q 042146           98 --GHTNYVFCINFNPQSNRIVS--DTFNETIRIWDIKTGKCLKVLPAHSDPVTAIDFNRDGTMIVTSSYDGLYRILDAST  173 (262)
Q Consensus        98 --~~~~~v~~~~~~~~~~~l~~--~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~d~~~  173 (262)
                        .+...+.++.+++.+.+++-  ....|.|.+||+.+-+++..+.+|++++.+++|+++|.+||+++..|+|       
T Consensus       125 ~~~n~~gl~AlS~n~~n~ylAyp~s~t~GdV~l~d~~nl~~v~~I~aH~~~lAalafs~~G~llATASeKGTV-------  197 (391)
T KOG2110|consen  125 TPPNPKGLCALSPNNANCYLAYPGSTTSGDVVLFDTINLQPVNTINAHKGPLAALAFSPDGTLLATASEKGTV-------  197 (391)
T ss_pred             cCCCccceEeeccCCCCceEEecCCCCCceEEEEEcccceeeeEEEecCCceeEEEECCCCCEEEEeccCceE-------
Confidence              34556777777777778874  3346899999999999999999999999999999999999999988876       


Q ss_pred             CCccEEEEEcCCCeEEEEecCCCceeeEEeccCCceeEEEEEEecCCCeeEEccccceEEEEEcCCCCeEEEeeecCCCc
Q 042146          174 PNGKFILVGTLDNTLRLWNYSTRKILKTYSGYTNSKYCISSTFSVTNGKYIVSHRDPVISVASHPAKNIIASGALDNDRT  253 (262)
Q Consensus       174 ~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~d~d~~  253 (262)
                                    |||+.+.+|+.+.+|+...                    -...|.+++|+|++++|++.|  +.++
T Consensus       198 --------------IRVf~v~~G~kl~eFRRG~--------------------~~~~IySL~Fs~ds~~L~~sS--~TeT  241 (391)
T KOG2110|consen  198 --------------IRVFSVPEGQKLYEFRRGT--------------------YPVSIYSLSFSPDSQFLAASS--NTET  241 (391)
T ss_pred             --------------EEEEEcCCccEeeeeeCCc--------------------eeeEEEEEEECCCCCeEEEec--CCCe
Confidence                          8999999999999987532                    234688999999999999999  8999


Q ss_pred             EEEEeecc
Q 042146          254 MKIWTQEK  261 (262)
Q Consensus       254 i~iw~~~~  261 (262)
                      |++|++++
T Consensus       242 VHiFKL~~  249 (391)
T KOG2110|consen  242 VHIFKLEK  249 (391)
T ss_pred             EEEEEecc
Confidence            99999874

>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein

Probab=99.81  E-value=2.9e-17  Score=126.94  Aligned_cols=165  Identities=15%  Similarity=0.200  Sum_probs=122.6

Q ss_pred             CeEEEecCCCeEEEeecCCCCCCCCCCCCCCccccCCccccccceeEEEEecCCCccceecccCCcceEEEEEeCCCCEE
Q 042146           36 RLLTSSSAEKTLLTYSLSSISNFDSTPPSPLQKFTGHEQGISDLATIRLWDVPTATSLKTLIGHTNYVFCINFNPQSNRI  115 (262)
Q Consensus        36 ~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l  115 (262)
                      +.+++++.|+.|++||+.                                   +++.+..+..+. .+.+++|+|+++.+
T Consensus         2 ~~~~s~~~d~~v~~~d~~-----------------------------------t~~~~~~~~~~~-~~~~l~~~~dg~~l   45 (300)
T TIGR03866         2 KAYVSNEKDNTISVIDTA-----------------------------------TLEVTRTFPVGQ-RPRGITLSKDGKLL   45 (300)
T ss_pred             cEEEEecCCCEEEEEECC-----------------------------------CCceEEEEECCC-CCCceEECCCCCEE
Confidence            568899999988888653                                   444445554433 35679999999876


Q ss_pred             -EeecCCCeEEEEECCCCeeeeeeecCCCCeeeEEEccCCCEEEEE-eCCCeEEEEeCCC-------------------C
Q 042146          116 -VSDTFNETIRIWDIKTGKCLKVLPAHSDPVTAIDFNRDGTMIVTS-SYDGLYRILDAST-------------------P  174 (262)
Q Consensus       116 -~~~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~~dg~i~~~d~~~-------------------~  174 (262)
                       ++++.++.|++||+.+++.+..+..+.. +..++|+|+++.++++ +.++.+++||+..                   |
T Consensus        46 ~~~~~~~~~v~~~d~~~~~~~~~~~~~~~-~~~~~~~~~g~~l~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~  124 (300)
T TIGR03866        46 YVCASDSDTIQVIDLATGEVIGTLPSGPD-PELFALHPNGKILYIANEDDNLVTVIDIETRKVLAEIPVGVEPEGMAVSP  124 (300)
T ss_pred             EEEECCCCeEEEEECCCCcEEEeccCCCC-ccEEEECCCCCEEEEEcCCCCeEEEEECCCCeEEeEeeCCCCcceEEECC
Confidence             5677889999999999888777655443 5778999999877655 5689999999875                   6


Q ss_pred             CccEEEEEcCCC-eEEEEecCCCceeeEEeccCCceeEEEEEEecCCCeeEEccccceEEEEEcCCCCeEEEeeecCCCc
Q 042146          175 NGKFILVGTLDN-TLRLWNYSTRKILKTYSGYTNSKYCISSTFSVTNGKYIVSHRDPVISVASHPAKNIIASGALDNDRT  253 (262)
Q Consensus       175 ~~~~l~~~~~dg-~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~d~d~~  253 (262)
                      ++++++++..++ .+.+||.++++......                       ....+..++|+|+++.|+.++. .++.
T Consensus       125 dg~~l~~~~~~~~~~~~~d~~~~~~~~~~~-----------------------~~~~~~~~~~s~dg~~l~~~~~-~~~~  180 (300)
T TIGR03866       125 DGKIVVNTSETTNMAHFIDTKTYEIVDNVL-----------------------VDQRPRFAEFTADGKELWVSSE-IGGT  180 (300)
T ss_pred             CCCEEEEEecCCCeEEEEeCCCCeEEEEEE-----------------------cCCCccEEEECCCCCEEEEEcC-CCCE
Confidence            788888887765 46678988776655443                       2234567999999998865541 5899


Q ss_pred             EEEEeecc
Q 042146          254 MKIWTQEK  261 (262)
Q Consensus       254 i~iw~~~~  261 (262)
                      |++||+++
T Consensus       181 v~i~d~~~  188 (300)
T TIGR03866       181 VSVIDVAT  188 (300)
T ss_pred             EEEEEcCc
Confidence            99999864

Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.

>KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=99.81  E-value=5.9e-18  Score=122.72  Aligned_cols=161  Identities=19%  Similarity=0.393  Sum_probs=120.0

Q ss_pred             ccCCcceEEEEEeCCCCEEEeecCCCeEEEEECCCC----eeeeeeecCCCCeeeEEEcc--CCCEEEEEeCCCeEEEEe
Q 042146           97 IGHTNYVFCINFNPQSNRIVSDTFNETIRIWDIKTG----KCLKVLPAHSDPVTAIDFNR--DGTMIVTSSYDGLYRILD  170 (262)
Q Consensus        97 ~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~----~~~~~~~~~~~~v~~~~~~~--~~~~l~~~~~dg~i~~~d  170 (262)
                      .+|++-|.++.|++.|+.+++++.|++|+|||.+..    .+....+.|.+.|..+.|.+  -|+.+++|+.|+++.+|.
T Consensus        10 s~h~DlihdVs~D~~GRRmAtCSsDq~vkI~d~~~~s~~W~~Ts~Wrah~~Si~rV~WAhPEfGqvvA~cS~Drtv~iWE   89 (361)
T KOG2445|consen   10 SGHKDLIHDVSFDFYGRRMATCSSDQTVKIWDSTSDSGTWSCTSSWRAHDGSIWRVVWAHPEFGQVVATCSYDRTVSIWE   89 (361)
T ss_pred             cCCcceeeeeeecccCceeeeccCCCcEEEEeccCCCCceEEeeeEEecCCcEEEEEecCccccceEEEEecCCceeeee
Confidence            368899999999999999999999999999997543    45667789999999999976  688999999999999998


Q ss_pred             CCC-------------------------------CCccEEEEEcCCCeEEEEecCCC------ceeeEEe-------ccC
Q 042146          171 AST-------------------------------PNGKFILVGTLDNTLRLWNYSTR------KILKTYS-------GYT  206 (262)
Q Consensus       171 ~~~-------------------------------~~~~~l~~~~~dg~i~i~d~~~~------~~~~~~~-------~~~  206 (262)
                      -..                               .-|-.|++++.||.+|||+....      .+..+++       .+.
T Consensus        90 E~~~~~~~~~~~Wv~~ttl~DsrssV~DV~FaP~hlGLklA~~~aDG~lRIYEA~dp~nLs~W~Lq~Ei~~~~~pp~~~~  169 (361)
T KOG2445|consen   90 EQEKSEEAHGRRWVRRTTLVDSRSSVTDVKFAPKHLGLKLAAASADGILRIYEAPDPMNLSQWTLQHEIQNVIDPPGKNK  169 (361)
T ss_pred             ecccccccccceeEEEEEeecCCcceeEEEecchhcceEEEEeccCcEEEEEecCCccccccchhhhhhhhccCCccccc
Confidence            522                               34667999999999999986532      2222222       122


Q ss_pred             CceeEEEEEEecCCCee--------------------------------EEccccceEEEEEcCC----CCeEEEeeecC
Q 042146          207 NSKYCISSTFSVTNGKY--------------------------------IVSHRDPVISVASHPA----KNIIASGALDN  250 (262)
Q Consensus       207 ~~~~~~~~~~~~~~~~~--------------------------------~~~~~~~v~~~~~~p~----~~~l~~~~~d~  250 (262)
                      ..-.|+....+.....+                                +.+|..+|++++|.|+    -.+||+++  .
T Consensus       170 ~~~~CvsWn~sr~~~p~iAvgs~e~a~~~~~~~Iye~~e~~rKw~kva~L~d~~dpI~di~wAPn~Gr~y~~lAvA~--k  247 (361)
T KOG2445|consen  170 QPCFCVSWNPSRMHEPLIAVGSDEDAPHLNKVKIYEYNENGRKWLKVAELPDHTDPIRDISWAPNIGRSYHLLAVAT--K  247 (361)
T ss_pred             CcceEEeeccccccCceEEEEcccCCccccceEEEEecCCcceeeeehhcCCCCCcceeeeeccccCCceeeEEEee--c
Confidence            22223332211111111                                1128899999999996    34799999  8


Q ss_pred             CCcEEEEeec
Q 042146          251 DRTMKIWTQE  260 (262)
Q Consensus       251 d~~i~iw~~~  260 (262)
                      || |+||++.
T Consensus       248 Dg-v~I~~v~  256 (361)
T KOG2445|consen  248 DG-VRIFKVK  256 (361)
T ss_pred             Cc-EEEEEEe
Confidence            89 9999987

>KOG2055 consensus WD40 repeat protein [General function prediction only]

Probab=99.80  E-value=1.3e-17  Score=126.92  Aligned_cols=170  Identities=18%  Similarity=0.359  Sum_probs=128.4

Q ss_pred             CCCceeeec----ccccceecccCcCceEEEEEccCCC-eEEEecCCCeEEEeecCCCCCCCCCCCC-----CCcccc-C
Q 042146            3 SDRSLESFR----PYTLTQTLNGHLRAVSYVKFSHDGR-LLTSSSAEKTLLTYSLSSISNFDSTPPS-----PLQKFT-G   71 (262)
Q Consensus         3 ~d~~i~~~~----~~~~~~~~~~h~~~v~~~~~~~~~~-~l~s~~~d~~i~iw~~~~~~~~~~~~~~-----~~~~~~-~   71 (262)
                      .|+++++|+    ....++.+.--..||.+..|.|+|. .+++++.....+.||++..+......+.     ....|. .
T Consensus       233 ~d~~lrifqvDGk~N~~lqS~~l~~fPi~~a~f~p~G~~~i~~s~rrky~ysyDle~ak~~k~~~~~g~e~~~~e~FeVS  312 (514)
T KOG2055|consen  233 LDGTLRIFQVDGKVNPKLQSIHLEKFPIQKAEFAPNGHSVIFTSGRRKYLYSYDLETAKVTKLKPPYGVEEKSMERFEVS  312 (514)
T ss_pred             CCCcEEEEEecCccChhheeeeeccCccceeeecCCCceEEEecccceEEEEeeccccccccccCCCCcccchhheeEec
Confidence            488888885    3346677766788999999999999 9999999999999999875443222211     111111 1


Q ss_pred             Cccccccc----eeEEEEecCCCccceecccCCcceEEEEEeCCCCEEEeecCCCeEEEEECCCCeeeeeeecCCC-Cee
Q 042146           72 HEQGISDL----ATIRLWDVPTATSLKTLIGHTNYVFCINFNPQSNRIVSDTFNETIRIWDIKTGKCLKVLPAHSD-PVT  146 (262)
Q Consensus        72 ~~~~v~~~----~~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~-~v~  146 (262)
                      |......+    +.|.+....+++.+.+++ -.+.|..++|+.+++.|++.+.+|.|.+||++...+++.+....+ .-+
T Consensus       313 hd~~fia~~G~~G~I~lLhakT~eli~s~K-ieG~v~~~~fsSdsk~l~~~~~~GeV~v~nl~~~~~~~rf~D~G~v~gt  391 (514)
T KOG2055|consen  313 HDSNFIAIAGNNGHIHLLHAKTKELITSFK-IEGVVSDFTFSSDSKELLASGGTGEVYVWNLRQNSCLHRFVDDGSVHGT  391 (514)
T ss_pred             CCCCeEEEcccCceEEeehhhhhhhhheee-eccEEeeEEEecCCcEEEEEcCCceEEEEecCCcceEEEEeecCcccee
Confidence            22221111    167888888888887776 467899999999999999999999999999999999988864221 346


Q ss_pred             eEEEccCCCEEEEEeCCCeEEEEeCCC
Q 042146          147 AIDFNRDGTMIVTSSYDGLYRILDAST  173 (262)
Q Consensus       147 ~~~~~~~~~~l~~~~~dg~i~~~d~~~  173 (262)
                      +++.++++.+|++|+..|.|.|||..+
T Consensus       392 s~~~S~ng~ylA~GS~~GiVNIYd~~s  418 (514)
T KOG2055|consen  392 SLCISLNGSYLATGSDSGIVNIYDGNS  418 (514)
T ss_pred             eeeecCCCceEEeccCcceEEEeccch
Confidence            777889999999999999999999665

>COG2319 FOG: WD40 repeat [General function prediction only]

Probab=99.80  E-value=1.4e-16  Score=128.49  Aligned_cols=220  Identities=36%  Similarity=0.658  Sum_probs=171.5

Q ss_pred             ecccCcCceEEEEEccCCCeEEEecCCCeEEEeecCCCC-CCCCCCC---CCCccccC-C-ccc--c---cc-ceeEEEE
Q 042146           18 TLNGHLRAVSYVKFSHDGRLLTSSSAEKTLLTYSLSSIS-NFDSTPP---SPLQKFTG-H-EQG--I---SD-LATIRLW   85 (262)
Q Consensus        18 ~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~iw~~~~~~-~~~~~~~---~~~~~~~~-~-~~~--v---~~-~~~i~v~   85 (262)
                      .+..|...+.++.+.+.+..++.++.|+.+.+|+..... .......   .....+.. . ...  +   .. ...+.+|
T Consensus        60 ~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~  139 (466)
T COG2319          60 LLRGHEDSITSIAFSPDGELLLSGSSDGTIKLWDLDNGEKLIKSLEGLHDSSVSKLALSSPDGNSILLASSSLDGTVKLW  139 (466)
T ss_pred             eeeeccceEEEEEECCCCcEEEEecCCCcEEEEEcCCCceeEEEEeccCCCceeeEEEECCCcceEEeccCCCCccEEEE
Confidence            456899999999999999999999999999999987653 1111111   11111111 1 111  1   11 3389999


Q ss_pred             ecCC-CccceecccCCcceEEEEEeCCCCEEEeecC-CCeEEEEECCCCeeeeeeecCCCCeeeEEEccCCC-EEEEEeC
Q 042146           86 DVPT-ATSLKTLIGHTNYVFCINFNPQSNRIVSDTF-NETIRIWDIKTGKCLKVLPAHSDPVTAIDFNRDGT-MIVTSSY  162 (262)
Q Consensus        86 d~~~-~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~~~~~  162 (262)
                      +... ......+..|...|..++|+|++..+++++. ++.+++|++..+..+..+..|...+.+++|+|++. .+++++.
T Consensus       140 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~  219 (466)
T COG2319         140 DLSTPGKLIRTLEGHSESVTSLAFSPDGKLLASGSSLDGTIKLWDLRTGKPLSTLAGHTDPVSSLAFSPDGGLLIASGSS  219 (466)
T ss_pred             EecCCCeEEEEEecCcccEEEEEECCCCCEEEecCCCCCceEEEEcCCCceEEeeccCCCceEEEEEcCCcceEEEEecC
Confidence            9987 7777888899999999999999998888886 99999999998888888888999999999999998 5555599


Q ss_pred             CCeEEEEeCCC--------------------CCccEEEEEcCCCeEEEEecCCCce-eeEEeccCCceeEEEEEEecCCC
Q 042146          163 DGLYRILDAST--------------------PNGKFILVGTLDNTLRLWNYSTRKI-LKTYSGYTNSKYCISSTFSVTNG  221 (262)
Q Consensus       163 dg~i~~~d~~~--------------------~~~~~l~~~~~dg~i~i~d~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~  221 (262)
                      |+.+++||...                    +++.++++++.|+.+++|+.+.... ...+..                 
T Consensus       220 d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~-----------------  282 (466)
T COG2319         220 DGTIRLWDLSTGKLLRSTLSGHSDSVVSSFSPDGSLLASGSSDGTIRLWDLRSSSSLLRTLSG-----------------  282 (466)
T ss_pred             CCcEEEEECCCCcEEeeecCCCCcceeEeECCCCCEEEEecCCCcEEEeeecCCCcEEEEEec-----------------
Confidence            99999997653                    3346778899999999999986655 333322                 


Q ss_pred             eeEEccccceEEEEEcCCCCeEEEeeecCCCcEEEEeecc
Q 042146          222 KYIVSHRDPVISVASHPAKNIIASGALDNDRTMKIWTQEK  261 (262)
Q Consensus       222 ~~~~~~~~~v~~~~~~p~~~~l~~~~~d~d~~i~iw~~~~  261 (262)
                           |...+.++.|+|++..+++++  .|+.+++|+...
T Consensus       283 -----~~~~v~~~~~~~~~~~~~~~~--~d~~~~~~~~~~  315 (466)
T COG2319         283 -----HSSSVLSVAFSPDGKLLASGS--SDGTVRLWDLET  315 (466)
T ss_pred             -----CCccEEEEEECCCCCEEEEee--CCCcEEEEEcCC
Confidence                 788999999999988888887  678899997753

>KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton]

Probab=99.79  E-value=2.1e-17  Score=120.46  Aligned_cols=202  Identities=19%  Similarity=0.259  Sum_probs=153.0

Q ss_pred             eecccCcCceEEEEEccCCCeEEEecCCCeEEEeecCCCCCCCCCCCCCCccccCCccccccceeEEEEecCCCccceec
Q 042146           17 QTLNGHLRAVSYVKFSHDGRLLTSSSAEKTLLTYSLSSISNFDSTPPSPLQKFTGHEQGISDLATIRLWDVPTATSLKTL   96 (262)
Q Consensus        17 ~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~i~v~d~~~~~~~~~~   96 (262)
                      ..+..-.++|+|.+|++|+..+|.+-....|.||...+.                                .-.+..+++
T Consensus         4 ~~~~~~~~pitchAwn~drt~iAv~~~~~evhiy~~~~~--------------------------------~~w~~~htl   51 (361)
T KOG1523|consen    4 VVFHRLLEPITCHAWNSDRTQIAVSPNNHEVHIYSMLGA--------------------------------DLWEPAHTL   51 (361)
T ss_pred             EEeeeccCceeeeeecCCCceEEeccCCceEEEEEecCC--------------------------------CCceeceeh
Confidence            344445689999999999999999999989888855331                                114677888


Q ss_pred             ccCCcceEEEEEeCCCCEEEeecCCCeEEEEECCCC---eeeeeeecCCCCeeeEEEccCCCEEEEEeCCCeEEEEeCCC
Q 042146           97 IGHTNYVFCINFNPQSNRIVSDTFNETIRIWDIKTG---KCLKVLPAHSDPVTAIDFNRDGTMIVTSSYDGLYRILDAST  173 (262)
Q Consensus        97 ~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~---~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~d~~~  173 (262)
                      +.|...|+.+.|+|..+.|++++.|..-++|....+   ++...+..++...+++.|+|.++.|++|+....|.+|-...
T Consensus        52 s~Hd~~vtgvdWap~snrIvtcs~drnayVw~~~~~~~WkptlvLlRiNrAAt~V~WsP~enkFAVgSgar~isVcy~E~  131 (361)
T KOG1523|consen   52 SEHDKIVTGVDWAPKSNRIVTCSHDRNAYVWTQPSGGTWKPTLVLLRINRAATCVKWSPKENKFAVGSGARLISVCYYEQ  131 (361)
T ss_pred             hhhCcceeEEeecCCCCceeEccCCCCccccccCCCCeeccceeEEEeccceeeEeecCcCceEEeccCccEEEEEEEec
Confidence            999999999999999999999999999999998433   45555667899999999999999999999999999998765


Q ss_pred             ------------------------CCccEEEEEcCCCeEEEEecCCCceeeEEeccCCceeEEEEEEecCCCeeEE---c
Q 042146          174 ------------------------PNGKFILVGTLDNTLRLWNYSTRKILKTYSGYTNSKYCISSTFSVTNGKYIV---S  226 (262)
Q Consensus       174 ------------------------~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~  226 (262)
                                              |++-+|++|+.|+..+++..-- +.+.+-+.  ...+.-...|    +.++.   .
T Consensus       132 ENdWWVsKhikkPirStv~sldWhpnnVLlaaGs~D~k~rVfSayI-K~Vdekpa--p~pWgsk~PF----G~lm~E~~~  204 (361)
T KOG1523|consen  132 ENDWWVSKHIKKPIRSTVTSLDWHPNNVLLAAGSTDGKCRVFSAYI-KGVDEKPA--PTPWGSKMPF----GQLMSEASS  204 (361)
T ss_pred             ccceehhhhhCCccccceeeeeccCCcceecccccCcceeEEEEee-eccccCCC--CCCCccCCcH----HHHHHhhcc
Confidence                                    7888999999999999986421 11111110  1111111000    00000   1


Q ss_pred             cccceEEEEEcCCCCeEEEeeecCCCcEEEEee
Q 042146          227 HRDPVISVASHPAKNIIASGALDNDRTMKIWTQ  259 (262)
Q Consensus       227 ~~~~v~~~~~~p~~~~l~~~~~d~d~~i~iw~~  259 (262)
                      ..+.|..+.|+|+|..|+-.+  .|+.+.+=|.
T Consensus       205 ~ggwvh~v~fs~sG~~lawv~--Hds~v~~~da  235 (361)
T KOG1523|consen  205 SGGWVHGVLFSPSGNRLAWVG--HDSTVSFVDA  235 (361)
T ss_pred             CCCceeeeEeCCCCCEeeEec--CCCceEEeec
Confidence            567899999999999999999  8898887654

>KOG1963 consensus WD40 repeat protein [General function prediction only]

Probab=99.78  E-value=6.5e-17  Score=131.90  Aligned_cols=122  Identities=20%  Similarity=0.306  Sum_probs=99.8

Q ss_pred             ccCcCceEEEEEccCCCeEEEecCCCeEEEeecCCCCCCCCCCCCCCccccCCccccccceeEEEEecCCCccceecccC
Q 042146           20 NGHLRAVSYVKFSHDGRLLTSSSAEKTLLTYSLSSISNFDSTPPSPLQKFTGHEQGISDLATIRLWDVPTATSLKTLIGH   99 (262)
Q Consensus        20 ~~h~~~v~~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~i~v~d~~~~~~~~~~~~~   99 (262)
                      ..|...++|.++||+++++|+|..||+|.+|.--...                               ........+.-|
T Consensus       202 ~~Htf~~t~~~~spn~~~~Aa~d~dGrI~vw~d~~~~-------------------------------~~~~t~t~lHWH  250 (792)
T KOG1963|consen  202 VHHTFNITCVALSPNERYLAAGDSDGRILVWRDFGSS-------------------------------DDSETCTLLHWH  250 (792)
T ss_pred             hhhcccceeEEeccccceEEEeccCCcEEEEeccccc-------------------------------cccccceEEEec
Confidence            3578889999999999999999999999999422100                               011223345568


Q ss_pred             CcceEEEEEeCCCCEEEeecCCCeEEEEECCCCeeeeeeecCCCCeeeEEEccCCCEEEEEeCCCeEEEEeCCC
Q 042146          100 TNYVFCINFNPQSNRIVSDTFNETIRIWDIKTGKCLKVLPAHSDPVTAIDFNRDGTMIVTSSYDGLYRILDAST  173 (262)
Q Consensus       100 ~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~d~~~  173 (262)
                      ..+|++++|+++|.+|++|+..|.+.+|.+.+++ ..-++.-.++|..+.++||+.+.+....|..|.+..+.+
T Consensus       251 ~~~V~~L~fS~~G~~LlSGG~E~VLv~Wq~~T~~-kqfLPRLgs~I~~i~vS~ds~~~sl~~~DNqI~li~~~d  323 (792)
T KOG1963|consen  251 HDEVNSLSFSSDGAYLLSGGREGVLVLWQLETGK-KQFLPRLGSPILHIVVSPDSDLYSLVLEDNQIHLIKASD  323 (792)
T ss_pred             ccccceeEEecCCceEeecccceEEEEEeecCCC-cccccccCCeeEEEEEcCCCCeEEEEecCceEEEEeccc
Confidence            8999999999999999999999999999999988 444556678999999999999999999999988887643

>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins

Probab=99.78  E-value=1.8e-16  Score=113.66  Aligned_cols=116  Identities=21%  Similarity=0.498  Sum_probs=91.9

Q ss_pred             CcceEEEEEeCCCCEEEe--ecCCCeEEEEECCCCeeeeeeecCCCCeeeEEEccCCCEEEEEeCCCeEEEEeCCCCCcc
Q 042146          100 TNYVFCINFNPQSNRIVS--DTFNETIRIWDIKTGKCLKVLPAHSDPVTAIDFNRDGTMIVTSSYDGLYRILDASTPNGK  177 (262)
Q Consensus       100 ~~~v~~~~~~~~~~~l~~--~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~  177 (262)
                      .++|.+++|+|+++.+++  |..++.|.+||++ ++.+..+.  ...+..+.|+|+|++|++++.+              
T Consensus        59 ~~~I~~~~WsP~g~~favi~g~~~~~v~lyd~~-~~~i~~~~--~~~~n~i~wsP~G~~l~~~g~~--------------  121 (194)
T PF08662_consen   59 EGPIHDVAWSPNGNEFAVIYGSMPAKVTLYDVK-GKKIFSFG--TQPRNTISWSPDGRFLVLAGFG--------------  121 (194)
T ss_pred             CCceEEEEECcCCCEEEEEEccCCcccEEEcCc-ccEeEeec--CCCceEEEECCCCCEEEEEEcc--------------
Confidence            457999999999998754  4466799999997 66666663  5678899999999999888743              


Q ss_pred             EEEEEcCCCeEEEEecCCCceeeEEeccCCceeEEEEEEecCCCeeEEccccceEEEEEcCCCCeEEEeeec----CCCc
Q 042146          178 FILVGTLDNTLRLWNYSTRKILKTYSGYTNSKYCISSTFSVTNGKYIVSHRDPVISVASHPAKNIIASGALD----NDRT  253 (262)
Q Consensus       178 ~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~d----~d~~  253 (262)
                           ...|.|.+||.++.+.+....                       |. .++.++|+|+|++|+++...    .|+.
T Consensus       122 -----n~~G~l~~wd~~~~~~i~~~~-----------------------~~-~~t~~~WsPdGr~~~ta~t~~r~~~dng  172 (194)
T PF08662_consen  122 -----NLNGDLEFWDVRKKKKISTFE-----------------------HS-DATDVEWSPDGRYLATATTSPRLRVDNG  172 (194)
T ss_pred             -----CCCcEEEEEECCCCEEeeccc-----------------------cC-cEEEEEEcCCCCEEEEEEeccceecccc
Confidence                 345789999999888877764                       33 46899999999999999731    2788


Q ss_pred             EEEEeecc
Q 042146          254 MKIWTQEK  261 (262)
Q Consensus       254 i~iw~~~~  261 (262)
                      ++||++..
T Consensus       173 ~~Iw~~~G  180 (194)
T PF08662_consen  173 FKIWSFQG  180 (194)
T ss_pred             EEEEEecC
Confidence            99999864

>KOG1334 consensus WD40 repeat protein [General function prediction only]

Probab=99.77  E-value=3.1e-18  Score=131.18  Aligned_cols=224  Identities=20%  Similarity=0.298  Sum_probs=150.1

Q ss_pred             ccccceecccCcCceEEEEEccCCCeEEEecCCCeEEEeecCCCCCCCCC-CCCCCccccC-------Cccccc--ccee
Q 042146           12 PYTLTQTLNGHLRAVSYVKFSHDGRLLTSSSAEKTLLTYSLSSISNFDST-PPSPLQKFTG-------HEQGIS--DLAT   81 (262)
Q Consensus        12 ~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~-~~~~~~~~~~-------~~~~v~--~~~~   81 (262)
                      .+.+...|..|.+.|+.+.|+..|..|++||.|.+|.+||-......... .+.....++.       ....+.  ..+.
T Consensus       131 r~~l~~kL~~H~GcVntV~FN~~Gd~l~SgSDD~~vv~WdW~~~~~~l~f~SGH~~NvfQaKFiP~s~d~ti~~~s~dgq  210 (559)
T KOG1334|consen  131 RLRLQKKLNKHKGCVNTVHFNQRGDVLASGSDDLQVVVWDWVSGSPKLSFESGHCNNVFQAKFIPFSGDRTIVTSSRDGQ  210 (559)
T ss_pred             HhhhhhcccCCCCccceeeecccCceeeccCccceEEeehhhccCcccccccccccchhhhhccCCCCCcCceeccccCc
Confidence            45677788999999999999999999999999999999986554322111 1111111111       111111  1113


Q ss_pred             EEEEecCC-Cc--cceecccCCcceEEEEEeCC-CCEEEeecCCCeEEEEECCCCeeeeee---ecCCC---CeeeEEEc
Q 042146           82 IRLWDVPT-AT--SLKTLIGHTNYVFCINFNPQ-SNRIVSDTFNETIRIWDIKTGKCLKVL---PAHSD---PVTAIDFN  151 (262)
Q Consensus        82 i~v~d~~~-~~--~~~~~~~~~~~v~~~~~~~~-~~~l~~~~~dg~i~vwd~~~~~~~~~~---~~~~~---~v~~~~~~  151 (262)
                      +++=.+.. +.  ....+..|.++|.-++.-|+ ..-|.+++.|+.+.-.|++.+.+...+   ..+..   ....++..
T Consensus       211 vr~s~i~~t~~~e~t~rl~~h~g~vhklav~p~sp~~f~S~geD~~v~~~Dlr~~~pa~~~~cr~~~~~~~v~L~~Ia~~  290 (559)
T KOG1334|consen  211 VRVSEILETGYVENTKRLAPHEGPVHKLAVEPDSPKPFLSCGEDAVVFHIDLRQDVPAEKFVCREADEKERVGLYTIAVD  290 (559)
T ss_pred             eeeeeeccccceecceecccccCccceeeecCCCCCcccccccccceeeeeeccCCccceeeeeccCCccceeeeeEecC
Confidence            44433322 22  23456679999999999995 456889999999999999876432222   11222   34555555


Q ss_pred             cC-CCEEEEEeCCCeEEEEeCCC---------------------------------------------------------
Q 042146          152 RD-GTMIVTSSYDGLYRILDAST---------------------------------------------------------  173 (262)
Q Consensus       152 ~~-~~~l~~~~~dg~i~~~d~~~---------------------------------------------------------  173 (262)
                      |. ...+++++.|..+++||.+.                                                         
T Consensus       291 P~nt~~faVgG~dqf~RvYD~R~~~~e~~n~~~~~f~p~hl~~d~~v~ITgl~Ysh~~sElLaSYnDe~IYLF~~~~~~G  370 (559)
T KOG1334|consen  291 PRNTNEFAVGGSDQFARVYDQRRIDKEENNGVLDKFCPHHLVEDDPVNITGLVYSHDGSELLASYNDEDIYLFNKSMGDG  370 (559)
T ss_pred             CCCccccccCChhhhhhhhcccchhhccccchhhhcCCccccccCcccceeEEecCCccceeeeecccceEEeccccccC
Confidence            52 33556666666666666544                                                         


Q ss_pred             ---------------------------------CCccEEEEEcCCCeEEEEecCCCceeeEEeccCCceeEEEEEEecCC
Q 042146          174 ---------------------------------PNGKFILVGTLDNTLRLWNYSTRKILKTYSGYTNSKYCISSTFSVTN  220 (262)
Q Consensus       174 ---------------------------------~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~  220 (262)
                                                       |...|+++|+.-|.|.||+-.+++.+..+.+                
T Consensus       371 ~~p~~~s~~~~~~k~vYKGHrN~~TVKgVNFfGPrsEyVvSGSDCGhIFiW~K~t~eii~~Meg----------------  434 (559)
T KOG1334|consen  371 SEPDPSSPREQYVKRVYKGHRNSRTVKGVNFFGPRSEYVVSGSDCGHIFIWDKKTGEIIRFMEG----------------  434 (559)
T ss_pred             CCCCCCcchhhccchhhcccccccccceeeeccCccceEEecCccceEEEEecchhHHHHHhhc----------------
Confidence                                             5567777777777777777777777776665                


Q ss_pred             CeeEEccccceEEEEEcCCCCeEEEeeecCCCcEEEEee
Q 042146          221 GKYIVSHRDPVISVASHPAKNIIASGALDNDRTMKIWTQ  259 (262)
Q Consensus       221 ~~~~~~~~~~v~~~~~~p~~~~l~~~~~d~d~~i~iw~~  259 (262)
                            ...-|+|+.=||.-.+||++|  =|..|+||..
T Consensus       435 ------Dr~VVNCLEpHP~~PvLAsSG--id~DVKIWTP  465 (559)
T KOG1334|consen  435 ------DRHVVNCLEPHPHLPVLASSG--IDHDVKIWTP  465 (559)
T ss_pred             ------ccceEeccCCCCCCchhhccC--CccceeeecC
Confidence                  334799999999999999999  7899999987

>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]

Probab=99.77  E-value=1.6e-17  Score=129.04  Aligned_cols=187  Identities=19%  Similarity=0.261  Sum_probs=137.4

Q ss_pred             CCCCceeeec-ccccceecccCcCceEEEEEccCCCeEEEecCCCeEEEeecCCCCCC---CCCCCCCCccccCCccccc
Q 042146            2 SSDRSLESFR-PYTLTQTLNGHLRAVSYVKFSHDGRLLTSSSAEKTLLTYSLSSISNF---DSTPPSPLQKFTGHEQGIS   77 (262)
Q Consensus         2 s~d~~i~~~~-~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~---~~~~~~~~~~~~~~~~~v~   77 (262)
                      |+||.+.... ..+..+...+|.++|.|-.|+|||.-|+++++||.|++|.-...-..   ...++.....+......+.
T Consensus        82 s~DGkf~il~k~~rVE~sv~AH~~A~~~gRW~~dGtgLlt~GEDG~iKiWSrsGMLRStl~Q~~~~v~c~~W~p~S~~vl  161 (737)
T KOG1524|consen   82 SNDGRFVILNKSARVERSISAHAAAISSGRWSPDGAGLLTAGEDGVIKIWSRSGMLRSTVVQNEESIRCARWAPNSNSIV  161 (737)
T ss_pred             cCCceEEEecccchhhhhhhhhhhhhhhcccCCCCceeeeecCCceEEEEeccchHHHHHhhcCceeEEEEECCCCCceE
Confidence            5788888875 56788889999999999999999999999999999999976442110   0111111111122222221


Q ss_pred             c--ceeEEEEecCCCccceecccCCcceEEEEEeCCCCEEEeecCCCeEEEEECCCCeeeeeeecCCCCeeeEEEccCCC
Q 042146           78 D--LATIRLWDVPTATSLKTLIGHTNYVFCINFNPQSNRIVSDTFNETIRIWDIKTGKCLKVLPAHSDPVTAIDFNRDGT  155 (262)
Q Consensus        78 ~--~~~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~  155 (262)
                      .  .+.+.+-.+.....+..++.|.+-|.++.|+|..+++++|++|-..++||.. |+.+..-..|..+|++++|.|+ .
T Consensus       162 ~c~g~h~~IKpL~~n~k~i~WkAHDGiiL~~~W~~~s~lI~sgGED~kfKvWD~~-G~~Lf~S~~~ey~ITSva~npd-~  239 (737)
T KOG1524|consen  162 FCQGGHISIKPLAANSKIIRWRAHDGLVLSLSWSTQSNIIASGGEDFRFKIWDAQ-GANLFTSAAEEYAITSVAFNPE-K  239 (737)
T ss_pred             EecCCeEEEeecccccceeEEeccCcEEEEeecCccccceeecCCceeEEeeccc-CcccccCChhccceeeeeeccc-c
Confidence            1  1155555666666677788999999999999999999999999999999964 6677777789999999999999 5


Q ss_pred             EEEEEeCCCeEEEEeCCC---------CCccEEEEEcCCCeEEEE
Q 042146          156 MIVTSSYDGLYRILDAST---------PNGKFILVGTLDNTLRLW  191 (262)
Q Consensus       156 ~l~~~~~dg~i~~~d~~~---------~~~~~l~~~~~dg~i~i~  191 (262)
                      .++.++. .++++=..+.         +||..+++|+..|.+.+=
T Consensus       240 ~~~v~S~-nt~R~~~p~~GSifnlsWS~DGTQ~a~gt~~G~v~~A  283 (737)
T KOG1524|consen  240 DYLLWSY-NTARFSSPRVGSIFNLSWSADGTQATCGTSTGQLIVA  283 (737)
T ss_pred             ceeeeee-eeeeecCCCccceEEEEEcCCCceeeccccCceEEEe
Confidence            6666654 3455333333         889999999999977653

>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]

Probab=99.76  E-value=4.3e-17  Score=137.30  Aligned_cols=244  Identities=21%  Similarity=0.301  Sum_probs=157.0

Q ss_pred             cccceecccCcCceEEEEEccCC-CeEEEecCCCeEEEeecCCCCCCC-CC--------CCCCCcccc-----------C
Q 042146           13 YTLTQTLNGHLRAVSYVKFSHDG-RLLTSSSAEKTLLTYSLSSISNFD-ST--------PPSPLQKFT-----------G   71 (262)
Q Consensus        13 ~~~~~~~~~h~~~v~~~~~~~~~-~~l~s~~~d~~i~iw~~~~~~~~~-~~--------~~~~~~~~~-----------~   71 (262)
                      +.++..+..|...|..++.++.. .+|+|||.||+|++|++....... ..        .........           .
T Consensus      1038 G~lVAhL~Ehs~~v~k~a~s~~~~s~FvsgS~DGtVKvW~~~k~~~~~~s~rS~ltys~~~sr~~~vt~~~~~~~~Av~t 1117 (1431)
T KOG1240|consen 1038 GILVAHLHEHSSAVIKLAVSSEHTSLFVSGSDDGTVKVWNLRKLEGEGGSARSELTYSPEGSRVEKVTMCGNGDQFAVST 1117 (1431)
T ss_pred             ceEeehhhhccccccceeecCCCCceEEEecCCceEEEeeehhhhcCcceeeeeEEEeccCCceEEEEeccCCCeEEEEc
Confidence            45788889999999999988765 999999999999999986532210 00        000000000           0


Q ss_pred             Cccccc-----------------------------------------------cceeEEEEecCCCccceecc--cCCcc
Q 042146           72 HEQGIS-----------------------------------------------DLATIRLWDVPTATSLKTLI--GHTNY  102 (262)
Q Consensus        72 ~~~~v~-----------------------------------------------~~~~i~v~d~~~~~~~~~~~--~~~~~  102 (262)
                      ..+.+.                                               ..+.|..||........+++  ...+.
T Consensus      1118 ~DG~v~~~~id~~~~~~~~~~~~ri~n~~~~g~vv~m~a~~~~~~S~~lvy~T~~~~iv~~D~r~~~~~w~lk~~~~hG~ 1197 (1431)
T KOG1240|consen 1118 KDGSVRVLRIDHYNVSKRVATQVRIPNLKKDGVVVSMHAFTAIVQSHVLVYATDLSRIVSWDTRMRHDAWRLKNQLRHGL 1197 (1431)
T ss_pred             CCCeEEEEEccccccccceeeeeecccccCCCceEEeecccccccceeEEEEEeccceEEecchhhhhHHhhhcCccccc
Confidence            000000                                               00056677777665555443  34478


Q ss_pred             eEEEEEeCCCCEEEeecCCCeEEEEECCCCeeeeeee-cCCCCeeeEEEccC---CCEEEEEe--CCCeEEEEeCCC---
Q 042146          103 VFCINFNPQSNRIVSDTFNETIRIWDIKTGKCLKVLP-AHSDPVTAIDFNRD---GTMIVTSS--YDGLYRILDAST---  173 (262)
Q Consensus       103 v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~-~~~~~v~~~~~~~~---~~~l~~~~--~dg~i~~~d~~~---  173 (262)
                      |++++.+|.+++++.|+..|.+.+||+|-+.++.... ++..+++.+..+|-   ....++++  ..+.|.+|++..   
T Consensus      1198 vTSi~idp~~~WlviGts~G~l~lWDLRF~~~i~sw~~P~~~~i~~v~~~~~~~~~S~~vs~~~~~~nevs~wn~~~g~~ 1277 (1431)
T KOG1240|consen 1198 VTSIVIDPWCNWLVIGTSRGQLVLWDLRFRVPILSWEHPARAPIRHVWLCPTYPQESVSVSAGSSSNNEVSTWNMETGLR 1277 (1431)
T ss_pred             eeEEEecCCceEEEEecCCceEEEEEeecCceeecccCcccCCcceEEeeccCCCCceEEEecccCCCceeeeecccCcc
Confidence            9999999999999999999999999999887776653 24468888888772   24444444  577899999876   


Q ss_pred             ------------------------------------CCccEEEEEcCCCeEEEEecCCCcee-eEEeccCCceeEE----
Q 042146          174 ------------------------------------PNGKFILVGTLDNTLRLWNYSTRKIL-KTYSGYTNSKYCI----  212 (262)
Q Consensus       174 ------------------------------------~~~~~l~~~~~dg~i~i~d~~~~~~~-~~~~~~~~~~~~~----  212 (262)
                                                          ..+.++++|+.|..|+.||....+.. ..+.+........    
T Consensus      1278 ~~vl~~s~~~p~ls~~~Ps~~~~kp~~~~~~~~~~~~~~~~~ltggsd~kIR~wD~~~p~~ss~~~~~~s~~~~~~~~s~ 1357 (1431)
T KOG1240|consen 1278 QTVLWASDGAPILSYALPSNDARKPDSLAGISCGVCEKNGFLLTGGSDMKIRKWDPTRPEISSYAVPGPSTSYSTNSESY 1357 (1431)
T ss_pred             eEEEEcCCCCcchhhhcccccCCCCCcccceeeecccCCceeeecCCccceeeccCCCcccccccccCccccccccchhc
Confidence                                                23568999999999999998754332 1111110000000    


Q ss_pred             --EE---------------------------EEecCCCeeEEccccceEEEEEcCCC-CeEEEeeecCCCcEEEEe
Q 042146          213 --SS---------------------------TFSVTNGKYIVSHRDPVISVASHPAK-NIIASGALDNDRTMKIWT  258 (262)
Q Consensus       213 --~~---------------------------~~~~~~~~~~~~~~~~v~~~~~~p~~-~~l~~~~~d~d~~i~iw~  258 (262)
                        +.                           .........-..|..+|+++++.... .+|++++  .||.|+||+
T Consensus      1358 ~~~~i~~~~~i~e~i~~~~tv~~t~~~~~~~~~~~~~~~ps~~H~d~Itdma~~~~~q~llvs~s--~dG~IkiWk 1431 (1431)
T KOG1240|consen 1358 DLSTIPGSQFIDEFIIYQQTVGLTEALRENQKLRPGPSDPSTYHHDPITDMATLKSEQPLLVSSS--RDGVIKIWK 1431 (1431)
T ss_pred             cccccCCCccchhhhhhhhhcCchhhcccccccccCCCCCcccccchhhhhhhhccCccEEEEec--CCCeeeecC
Confidence              00                           00000111122288999999987654 5777888  899999995

>COG2319 FOG: WD40 repeat [General function prediction only]

Probab=99.76  E-value=1.8e-15  Score=121.96  Aligned_cols=198  Identities=37%  Similarity=0.689  Sum_probs=156.9

Q ss_pred             CCceeeecc---cccceecccCcCceEEEEEccCCCeEEEecC-CCeEEEeecCCCCCCCCCCCCCCccccCCccccccc
Q 042146            4 DRSLESFRP---YTLTQTLNGHLRAVSYVKFSHDGRLLTSSSA-EKTLLTYSLSSISNFDSTPPSPLQKFTGHEQGISDL   79 (262)
Q Consensus         4 d~~i~~~~~---~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~-d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~   79 (262)
                      |+.+..|+.   ......+..|...|.++.|+|++.++++++. |+.+++|+..                          
T Consensus       133 d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------------------  186 (466)
T COG2319         133 DGTVKLWDLSTPGKLIRTLEGHSESVTSLAFSPDGKLLASGSSLDGTIKLWDLR--------------------------  186 (466)
T ss_pred             CccEEEEEecCCCeEEEEEecCcccEEEEEECCCCCEEEecCCCCCceEEEEcC--------------------------
Confidence            777777764   4678888999999999999999998988885 9998888553                          


Q ss_pred             eeEEEEecCCCccceecccCCcceEEEEEeCCCC-EEEeecCCCeEEEEECCCCeeee-eeecCCCCeeeEEEccCCCEE
Q 042146           80 ATIRLWDVPTATSLKTLIGHTNYVFCINFNPQSN-RIVSDTFNETIRIWDIKTGKCLK-VLPAHSDPVTAIDFNRDGTMI  157 (262)
Q Consensus        80 ~~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~~~~~dg~i~vwd~~~~~~~~-~~~~~~~~v~~~~~~~~~~~l  157 (262)
                               .+..+..+..|...|.+++|+|++. .+++++.|+.|++||...+..+. .+..|.... ...|+|++..+
T Consensus       187 ---------~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~  256 (466)
T COG2319         187 ---------TGKPLSTLAGHTDPVSSLAFSPDGGLLIASGSSDGTIRLWDLSTGKLLRSTLSGHSDSV-VSSFSPDGSLL  256 (466)
T ss_pred             ---------CCceEEeeccCCCceEEEEEcCCcceEEEEecCCCcEEEEECCCCcEEeeecCCCCcce-eEeECCCCCEE
Confidence                     3455566666999999999999988 55555999999999998787777 677887775 44899999889


Q ss_pred             EEEeCCCeEEEEeCCC---------------------CCccEEEEEcCCCeEEEEecCCCceeeEEe--ccCCceeEEEE
Q 042146          158 VTSSYDGLYRILDAST---------------------PNGKFILVGTLDNTLRLWNYSTRKILKTYS--GYTNSKYCISS  214 (262)
Q Consensus       158 ~~~~~dg~i~~~d~~~---------------------~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~--~~~~~~~~~~~  214 (262)
                      ++++.|+.+++|+++.                     |++..+++++.|+.+.+||..+........  .          
T Consensus       257 ~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~----------  326 (466)
T COG2319         257 ASGSSDGTIRLWDLRSSSSLLRTLSGHSSSVLSVAFSPDGKLLASGSSDGTVRLWDLETGKLLSSLTLKG----------  326 (466)
T ss_pred             EEecCCCcEEEeeecCCCcEEEEEecCCccEEEEEECCCCCEEEEeeCCCcEEEEEcCCCceEEEeeecc----------
Confidence            9999999999999864                     556777778888889999888777666554  2          


Q ss_pred             EEecCCCeeEEccccceEEEEEcCCCCeEEEe-eecCCCcEEEEeecc
Q 042146          215 TFSVTNGKYIVSHRDPVISVASHPAKNIIASG-ALDNDRTMKIWTQEK  261 (262)
Q Consensus       215 ~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~-~~d~d~~i~iw~~~~  261 (262)
                                  |...+..+.|.+++..++.+ .  .|+.+++|++..
T Consensus       327 ------------~~~~~~~~~~~~~~~~~~~~~~--~d~~~~~~~~~~  360 (466)
T COG2319         327 ------------HEGPVSSLSFSPDGSLLVSGGS--DDGTIRLWDLRT  360 (466)
T ss_pred             ------------cCCceEEEEECCCCCEEEEeec--CCCcEEeeecCC
Confidence                        66678899884332555555 5  678999998754

>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]

Probab=99.76  E-value=4.7e-16  Score=115.56  Aligned_cols=148  Identities=16%  Similarity=0.310  Sum_probs=113.1

Q ss_pred             cCceEEEEEccCCCeEEEecCCCeEEEeecCCCCCCCCCC-----CCCCccccCCcc-------ccccceeEEEEecCCC
Q 042146           23 LRAVSYVKFSHDGRLLTSSSAEKTLLTYSLSSISNFDSTP-----PSPLQKFTGHEQ-------GISDLATIRLWDVPTA   90 (262)
Q Consensus        23 ~~~v~~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~-----~~~~~~~~~~~~-------~v~~~~~i~v~d~~~~   90 (262)
                      ..+|.++.++.  +.|++.-.+ .|.|||+...+......     +.-+..+..+..       .-...+.|.+||..+-
T Consensus        87 pt~IL~VrmNr--~RLvV~Lee-~IyIydI~~MklLhTI~t~~~n~~gl~AlS~n~~n~ylAyp~s~t~GdV~l~d~~nl  163 (391)
T KOG2110|consen   87 PTSILAVRMNR--KRLVVCLEE-SIYIYDIKDMKLLHTIETTPPNPKGLCALSPNNANCYLAYPGSTTSGDVVLFDTINL  163 (391)
T ss_pred             CCceEEEEEcc--ceEEEEEcc-cEEEEecccceeehhhhccCCCccceEeeccCCCCceEEecCCCCCceEEEEEcccc
Confidence            45677777754  456666554 49999998754432211     111222222221       1122448999999999


Q ss_pred             ccceecccCCcceEEEEEeCCCCEEEeecCCCe-EEEEECCCCeeeeeeecCC--CCeeeEEEccCCCEEEEEeCCCeEE
Q 042146           91 TSLKTLIGHTNYVFCINFNPQSNRIVSDTFNET-IRIWDIKTGKCLKVLPAHS--DPVTAIDFNRDGTMIVTSSYDGLYR  167 (262)
Q Consensus        91 ~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~-i~vwd~~~~~~~~~~~~~~--~~v~~~~~~~~~~~l~~~~~dg~i~  167 (262)
                      +++..+..|++++.+++|+|+|.+||++|+.|+ |+|+.+.+|+.+.+++...  ..|.+++|+|++.+|++.+..++|+
T Consensus       164 ~~v~~I~aH~~~lAalafs~~G~llATASeKGTVIRVf~v~~G~kl~eFRRG~~~~~IySL~Fs~ds~~L~~sS~TeTVH  243 (391)
T KOG2110|consen  164 QPVNTINAHKGPLAALAFSPDGTLLATASEKGTVIRVFSVPEGQKLYEFRRGTYPVSIYSLSFSPDSQFLAASSNTETVH  243 (391)
T ss_pred             eeeeEEEecCCceeEEEECCCCCEEEEeccCceEEEEEEcCCccEeeeeeCCceeeEEEEEEECCCCCeEEEecCCCeEE
Confidence            999999999999999999999999999999996 7899999999999997543  3689999999999999999999999


Q ss_pred             EEeCCC
Q 042146          168 ILDAST  173 (262)
Q Consensus       168 ~~d~~~  173 (262)
                      +|.+..
T Consensus       244 iFKL~~  249 (391)
T KOG2110|consen  244 IFKLEK  249 (391)
T ss_pred             EEEecc
Confidence            999876

>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]

Probab=99.76  E-value=7.9e-17  Score=120.63  Aligned_cols=160  Identities=21%  Similarity=0.350  Sum_probs=128.7

Q ss_pred             CCCCceeeec---------ccccceecccCcCceEEEEEccC-CCeEEEecCCCeEEEeecCCCCCCCCCCCCCCccccC
Q 042146            2 SSDRSLESFR---------PYTLTQTLNGHLRAVSYVKFSHD-GRLLTSSSAEKTLLTYSLSSISNFDSTPPSPLQKFTG   71 (262)
Q Consensus         2 s~d~~i~~~~---------~~~~~~~~~~h~~~v~~~~~~~~-~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~   71 (262)
                      |.|-++.+|+         ...++..|.+|...|--++|+|. .+.|++++.|.+|.+||+                   
T Consensus       101 SeD~~v~vW~IPe~~l~~~ltepvv~L~gH~rrVg~V~wHPtA~NVLlsag~Dn~v~iWnv-------------------  161 (472)
T KOG0303|consen  101 SEDTKVMVWQIPENGLTRDLTEPVVELYGHQRRVGLVQWHPTAPNVLLSAGSDNTVSIWNV-------------------  161 (472)
T ss_pred             CCCceEEEEECCCcccccCcccceEEEeecceeEEEEeecccchhhHhhccCCceEEEEec-------------------
Confidence            4577788885         24578889999999999999996 568999999999888854                   


Q ss_pred             CccccccceeEEEEecCCCccceecccCCcceEEEEEeCCCCEEEeecCCCeEEEEECCCCeeeeeeecCCC-CeeeEEE
Q 042146           72 HEQGISDLATIRLWDVPTATSLKTLIGHTNYVFCINFNPQSNRIVSDTFNETIRIWDIKTGKCLKVLPAHSD-PVTAIDF  150 (262)
Q Consensus        72 ~~~~v~~~~~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~-~v~~~~~  150 (262)
                                      .+++.+.++. |...|.++.|+.+|.++++.+.|..|+|||.++++.+.+-.+|.+ .-..+.|
T Consensus       162 ----------------~tgeali~l~-hpd~i~S~sfn~dGs~l~TtckDKkvRv~dpr~~~~v~e~~~heG~k~~Raif  224 (472)
T KOG0303|consen  162 ----------------GTGEALITLD-HPDMVYSMSFNRDGSLLCTTCKDKKVRVIDPRRGTVVSEGVAHEGAKPARAIF  224 (472)
T ss_pred             ----------------cCCceeeecC-CCCeEEEEEeccCCceeeeecccceeEEEcCCCCcEeeecccccCCCcceeEE
Confidence                            5677676776 999999999999999999999999999999999999998888876 3455667


Q ss_pred             ccCCCEEEEEe---CCCeEEEEeCCC----------------------CCccEE-EEEcCCCeEEEEecCCCc
Q 042146          151 NRDGTMIVTSS---YDGLYRILDAST----------------------PNGKFI-LVGTLDNTLRLWNYSTRK  197 (262)
Q Consensus       151 ~~~~~~l~~~~---~dg~i~~~d~~~----------------------~~~~~l-~~~~~dg~i~i~d~~~~~  197 (262)
                      -.++..+-+|.   .+..+.+||...                      ++...+ ++|-.|+.|+.|.+..-.
T Consensus       225 l~~g~i~tTGfsr~seRq~aLwdp~nl~eP~~~~elDtSnGvl~PFyD~dt~ivYl~GKGD~~IRYyEit~d~  297 (472)
T KOG0303|consen  225 LASGKIFTTGFSRMSERQIALWDPNNLEEPIALQELDTSNGVLLPFYDPDTSIVYLCGKGDSSIRYFEITNEP  297 (472)
T ss_pred             eccCceeeeccccccccceeccCcccccCcceeEEeccCCceEEeeecCCCCEEEEEecCCcceEEEEecCCC
Confidence            77888555553   577899999765                      445544 556688999999887644

>KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair]

Probab=99.75  E-value=2.4e-17  Score=123.66  Aligned_cols=167  Identities=23%  Similarity=0.359  Sum_probs=126.4

Q ss_pred             CcCceEEEEEccCCC-eEEEecCCCeEEEeecCCCCCCCCCCCCCCccccCCccccccceeEEEEecCCCccceecccCC
Q 042146           22 HLRAVSYVKFSHDGR-LLTSSSAEKTLLTYSLSSISNFDSTPPSPLQKFTGHEQGISDLATIRLWDVPTATSLKTLIGHT  100 (262)
Q Consensus        22 h~~~v~~~~~~~~~~-~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~i~v~d~~~~~~~~~~~~~~  100 (262)
                      ...+|.++.|.++.. .||||+.|..|++|.+.........                          .+-+.+..+..|.
T Consensus        12 ~~~pv~s~dfq~n~~~~laT~G~D~~iriW~v~r~~~~~~~--------------------------~~V~y~s~Ls~H~   65 (434)
T KOG1009|consen   12 DHEPVYSVDFQKNSLNKLATAGGDKDIRIWKVNRSEPGGGD--------------------------MKVEYLSSLSRHT   65 (434)
T ss_pred             CCCceEEEEeccCcccceecccCccceeeeeeeecCCCCCc--------------------------eeEEEeecccCCc
Confidence            346899999999876 9999999999999976542110000                          0112344677899


Q ss_pred             cceEEEEEeCCCCEEEeecCCCeEEEEECC--------C--------CeeeeeeecCCCCeeeEEEccCCCEEEEEeCCC
Q 042146          101 NYVFCINFNPQSNRIVSDTFNETIRIWDIK--------T--------GKCLKVLPAHSDPVTAIDFNRDGTMIVTSSYDG  164 (262)
Q Consensus       101 ~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~--------~--------~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg  164 (262)
                      ..|+++.|+|+|.+|++|+.+|.|.+|-..        +        -.....+.+|...|..++|+|++..+++++.  
T Consensus        66 ~aVN~vRf~p~gelLASg~D~g~v~lWk~~~~~~~~~d~e~~~~ke~w~v~k~lr~h~~diydL~Ws~d~~~l~s~s~--  143 (434)
T KOG1009|consen   66 RAVNVVRFSPDGELLASGGDGGEVFLWKQGDVRIFDADTEADLNKEKWVVKKVLRGHRDDIYDLAWSPDSNFLVSGSV--  143 (434)
T ss_pred             ceeEEEEEcCCcCeeeecCCCceEEEEEecCcCCccccchhhhCccceEEEEEecccccchhhhhccCCCceeeeeec--
Confidence            999999999999999999999999999765        2        1223455678899999999988877666654  


Q ss_pred             eEEEEeCCCCCccEEEEEcCCCeEEEEecCCCceeeEEeccCCceeEEEEEEecCCCeeEEccccceEEEEEcCCCCeEE
Q 042146          165 LYRILDASTPNGKFILVGTLDNTLRLWNYSTRKILKTYSGYTNSKYCISSTFSVTNGKYIVSHRDPVISVASHPAKNIIA  244 (262)
Q Consensus       165 ~i~~~d~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~  244 (262)
                                          |..+++||+..|+....+..                      |...+..++|.|-+++++
T Consensus       144 --------------------dns~~l~Dv~~G~l~~~~~d----------------------h~~yvqgvawDpl~qyv~  181 (434)
T KOG1009|consen  144 --------------------DNSVRLWDVHAGQLLAILDD----------------------HEHYVQGVAWDPLNQYVA  181 (434)
T ss_pred             --------------------cceEEEEEeccceeEeeccc----------------------cccccceeecchhhhhhh
Confidence                                55677788888888888877                      777888889999888888


Q ss_pred             EeeecCCCcEEEEeec
Q 042146          245 SGALDNDRTMKIWTQE  260 (262)
Q Consensus       245 ~~~~d~d~~i~iw~~~  260 (262)
                      +-+  .|...+.+.++
T Consensus       182 s~s--~dr~~~~~~~~  195 (434)
T KOG1009|consen  182 SKS--SDRHPEGFSAK  195 (434)
T ss_pred             hhc--cCcccceeeee
Confidence            888  66655555543

>PRK11028 6-phosphogluconolactonase; Provisional

Probab=99.75  E-value=3e-15  Score=117.35  Aligned_cols=235  Identities=10%  Similarity=0.163  Sum_probs=146.1

Q ss_pred             CCCceeeeccc-----ccceecccCcCceEEEEEccCCCeEEEe-cCCCeEEEeecCCCCCC---CC--CCCCCCc-ccc
Q 042146            3 SDRSLESFRPY-----TLTQTLNGHLRAVSYVKFSHDGRLLTSS-SAEKTLLTYSLSSISNF---DS--TPPSPLQ-KFT   70 (262)
Q Consensus         3 ~d~~i~~~~~~-----~~~~~~~~h~~~v~~~~~~~~~~~l~s~-~~d~~i~iw~~~~~~~~---~~--~~~~~~~-~~~   70 (262)
                      .|+.|..|+-.     +.++.+. +.+....++++|++++|+++ ..++.|.+|+++.....   ..  ....+.. .+.
T Consensus        10 ~~~~I~~~~~~~~g~l~~~~~~~-~~~~~~~l~~spd~~~lyv~~~~~~~i~~~~~~~~g~l~~~~~~~~~~~p~~i~~~   88 (330)
T PRK11028         10 ESQQIHVWNLNHEGALTLLQVVD-VPGQVQPMVISPDKRHLYVGVRPEFRVLSYRIADDGALTFAAESPLPGSPTHISTD   88 (330)
T ss_pred             CCCCEEEEEECCCCceeeeeEEe-cCCCCccEEECCCCCEEEEEECCCCcEEEEEECCCCceEEeeeecCCCCceEEEEC
Confidence            46778777632     2445554 34567789999999988766 45889999998632111   00  0001110 111


Q ss_pred             CCccccc----cceeEEEEecCCCc----cceecccCCcceEEEEEeCCCCEEEe-ecCCCeEEEEECCCCeeee-----
Q 042146           71 GHEQGIS----DLATIRLWDVPTAT----SLKTLIGHTNYVFCINFNPQSNRIVS-DTFNETIRIWDIKTGKCLK-----  136 (262)
Q Consensus        71 ~~~~~v~----~~~~i~v~d~~~~~----~~~~~~~~~~~v~~~~~~~~~~~l~~-~~~dg~i~vwd~~~~~~~~-----  136 (262)
                      .....+.    ..+.|.+|++.+..    .+..+. +......++++|+++++++ ...++.|.+||+.+...+.     
T Consensus        89 ~~g~~l~v~~~~~~~v~v~~~~~~g~~~~~~~~~~-~~~~~~~~~~~p~g~~l~v~~~~~~~v~v~d~~~~g~l~~~~~~  167 (330)
T PRK11028         89 HQGRFLFSASYNANCVSVSPLDKDGIPVAPIQIIE-GLEGCHSANIDPDNRTLWVPCLKEDRIRLFTLSDDGHLVAQEPA  167 (330)
T ss_pred             CCCCEEEEEEcCCCeEEEEEECCCCCCCCceeecc-CCCcccEeEeCCCCCEEEEeeCCCCEEEEEEECCCCcccccCCC
Confidence            1111111    12378999986432    122222 2344677889999998865 4566899999997633221     


Q ss_pred             --eeecCCCCeeeEEEccCCCEEEEEeC-CCeEEEEeCCC------------------------------CCccEEEEEc
Q 042146          137 --VLPAHSDPVTAIDFNRDGTMIVTSSY-DGLYRILDAST------------------------------PNGKFILVGT  183 (262)
Q Consensus       137 --~~~~~~~~v~~~~~~~~~~~l~~~~~-dg~i~~~d~~~------------------------------~~~~~l~~~~  183 (262)
                        ... .......++|+|++++++++.. ++.|.+|++..                              |++++++++.
T Consensus       168 ~~~~~-~g~~p~~~~~~pdg~~lyv~~~~~~~v~v~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~i~~~pdg~~lyv~~  246 (330)
T PRK11028        168 EVTTV-EGAGPRHMVFHPNQQYAYCVNELNSSVDVWQLKDPHGEIECVQTLDMMPADFSDTRWAADIHITPDGRHLYACD  246 (330)
T ss_pred             ceecC-CCCCCceEEECCCCCEEEEEecCCCEEEEEEEeCCCCCEEEEEEEecCCCcCCCCccceeEEECCCCCEEEEec
Confidence              111 1234578999999999988875 89999999751                              5677777775


Q ss_pred             C-CCeEEEEecCCCceeeEEeccCCceeEEEEEEecCCCeeEEccccceEEEEEcCCCCeEEEeeecCCCcEEEEeec
Q 042146          184 L-DNTLRLWNYSTRKILKTYSGYTNSKYCISSTFSVTNGKYIVSHRDPVISVASHPAKNIIASGALDNDRTMKIWTQE  260 (262)
Q Consensus       184 ~-dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~d~d~~i~iw~~~  260 (262)
                      . ++.|.+|++........+..+..                   -......++++|+|++|+++.. .+++|.+|+++
T Consensus       247 ~~~~~I~v~~i~~~~~~~~~~~~~~-------------------~~~~p~~~~~~~dg~~l~va~~-~~~~v~v~~~~  304 (330)
T PRK11028        247 RTASLISVFSVSEDGSVLSFEGHQP-------------------TETQPRGFNIDHSGKYLIAAGQ-KSHHISVYEID  304 (330)
T ss_pred             CCCCeEEEEEEeCCCCeEEEeEEEe-------------------ccccCCceEECCCCCEEEEEEc-cCCcEEEEEEc
Confidence            4 57888888754322112211100                   1123457899999999998873 38999999885

>PRK01742 tolB translocation protein TolB; Provisional

Probab=99.75  E-value=3.5e-16  Score=126.37  Aligned_cols=190  Identities=17%  Similarity=0.155  Sum_probs=129.4

Q ss_pred             CCceeeec-ccccceecccCcCceEEEEEccCCCeEEEecCCC---eEEEeecCCCCCCCCCCCCCCccccCCccccccc
Q 042146            4 DRSLESFR-PYTLTQTLNGHLRAVSYVKFSHDGRLLTSSSAEK---TLLTYSLSSISNFDSTPPSPLQKFTGHEQGISDL   79 (262)
Q Consensus         4 d~~i~~~~-~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~---~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~   79 (262)
                      +..|+.++ ...-.+.+..|...+.+..|+|||+.|+.++.++   .|++|                             
T Consensus       183 ~~~i~i~d~dg~~~~~lt~~~~~v~~p~wSPDG~~la~~s~~~~~~~i~i~-----------------------------  233 (429)
T PRK01742        183 PYEVRVADYDGFNQFIVNRSSQPLMSPAWSPDGSKLAYVSFENKKSQLVVH-----------------------------  233 (429)
T ss_pred             eEEEEEECCCCCCceEeccCCCccccceEcCCCCEEEEEEecCCCcEEEEE-----------------------------
Confidence            34566664 2223456677888999999999999999876532   45555                             


Q ss_pred             eeEEEEecCCCcc--ceecccCCcceEEEEEeCCCCEEEeec-CCCeEEE--EECCCCeeeeeeecCCCCeeeEEEccCC
Q 042146           80 ATIRLWDVPTATS--LKTLIGHTNYVFCINFNPQSNRIVSDT-FNETIRI--WDIKTGKCLKVLPAHSDPVTAIDFNRDG  154 (262)
Q Consensus        80 ~~i~v~d~~~~~~--~~~~~~~~~~v~~~~~~~~~~~l~~~~-~dg~i~v--wd~~~~~~~~~~~~~~~~v~~~~~~~~~  154 (262)
                            |+.+++.  +..+.++   ...++|+|||+.|+.++ .+|.+.|  ||+.+++. ..+..+...+....|+|||
T Consensus       234 ------dl~tg~~~~l~~~~g~---~~~~~wSPDG~~La~~~~~~g~~~Iy~~d~~~~~~-~~lt~~~~~~~~~~wSpDG  303 (429)
T PRK01742        234 ------DLRSGARKVVASFRGH---NGAPAFSPDGSRLAFASSKDGVLNIYVMGANGGTP-SQLTSGAGNNTEPSWSPDG  303 (429)
T ss_pred             ------eCCCCceEEEecCCCc---cCceeECCCCCEEEEEEecCCcEEEEEEECCCCCe-EeeccCCCCcCCEEECCCC
Confidence                  4444432  2223333   34689999999887754 6776554  56666553 4555667778899999999


Q ss_pred             CEEEEEe-CCCeEEEEeCCC------------------CCccEEEEEcCCCeEEEEecCCCceeeEEeccCCceeEEEEE
Q 042146          155 TMIVTSS-YDGLYRILDAST------------------PNGKFILVGTLDNTLRLWNYSTRKILKTYSGYTNSKYCISST  215 (262)
Q Consensus       155 ~~l~~~~-~dg~i~~~d~~~------------------~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~  215 (262)
                      +.|+.++ .+|...+|++..                  |++++|+..+.++ +.+||+.+++.......           
T Consensus       304 ~~i~f~s~~~g~~~I~~~~~~~~~~~~l~~~~~~~~~SpDG~~ia~~~~~~-i~~~Dl~~g~~~~lt~~-----------  371 (429)
T PRK01742        304 QSILFTSDRSGSPQVYRMSASGGGASLVGGRGYSAQISADGKTLVMINGDN-VVKQDLTSGSTEVLSST-----------  371 (429)
T ss_pred             CEEEEEECCCCCceEEEEECCCCCeEEecCCCCCccCCCCCCEEEEEcCCC-EEEEECCCCCeEEecCC-----------
Confidence            9776555 577788887532                  6788887777655 55588887765432221           


Q ss_pred             EecCCCeeEEccccceEEEEEcCCCCeEEEeeecCCCcEEEEee
Q 042146          216 FSVTNGKYIVSHRDPVISVASHPAKNIIASGALDNDRTMKIWTQ  259 (262)
Q Consensus       216 ~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~d~d~~i~iw~~  259 (262)
                                 .  ....+.|+|++++|+.++  .++.+.+|.+
T Consensus       372 -----------~--~~~~~~~sPdG~~i~~~s--~~g~~~~l~~  400 (429)
T PRK01742        372 -----------F--LDESPSISPNGIMIIYSS--TQGLGKVLQL  400 (429)
T ss_pred             -----------C--CCCCceECCCCCEEEEEE--cCCCceEEEE
Confidence                       1  124578999999999999  7888888775

>KOG2321 consensus WD40 repeat protein [General function prediction only]

Probab=99.74  E-value=2e-16  Score=123.85  Aligned_cols=217  Identities=16%  Similarity=0.247  Sum_probs=158.5

Q ss_pred             cceecccCcCceEEEEEccCCCeE-EEecCCCeEEEeecCCCCCCC--CCCCCC------------------CccccCCc
Q 042146           15 LTQTLNGHLRAVSYVKFSHDGRLL-TSSSAEKTLLTYSLSSISNFD--STPPSP------------------LQKFTGHE   73 (262)
Q Consensus        15 ~~~~~~~h~~~v~~~~~~~~~~~l-~s~~~d~~i~iw~~~~~~~~~--~~~~~~------------------~~~~~~~~   73 (262)
                      +++.| +|...-+.|..+|||+|+ |+|..--.|++||+.+....-  ......                  -..+..|.
T Consensus        44 LiQdf-e~p~ast~ik~s~DGqY~lAtG~YKP~ikvydlanLSLKFERhlDae~V~feiLsDD~SK~v~L~~DR~IefHa  122 (703)
T KOG2321|consen   44 LIQDF-EMPTASTRIKVSPDGQYLLATGTYKPQIKVYDLANLSLKFERHLDAEVVDFEILSDDYSKSVFLQNDRTIEFHA  122 (703)
T ss_pred             HHHhc-CCccccceeEecCCCcEEEEecccCCceEEEEcccceeeeeecccccceeEEEeccchhhheEeecCceeeehh
Confidence            44444 478888999999999986 566677899999997743210  000000                  00000000


Q ss_pred             -----------------------cccccce---eEEEEecCCCccceecccCCcceEEEEEeCCCCEEEeecCCCeEEEE
Q 042146           74 -----------------------QGISDLA---TIRLWDVPTATSLKTLIGHTNYVFCINFNPQSNRIVSDTFNETIRIW  127 (262)
Q Consensus        74 -----------------------~~v~~~~---~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vw  127 (262)
                                             ..+...+   .|+-++++.|+.+..+....+.++++..++...+|++|+.+|.|-.|
T Consensus       123 k~G~hy~~RIP~~GRDm~y~~~scDly~~gsg~evYRlNLEqGrfL~P~~~~~~~lN~v~in~~hgLla~Gt~~g~VEfw  202 (703)
T KOG2321|consen  123 KYGRHYRTRIPKFGRDMKYHKPSCDLYLVGSGSEVYRLNLEQGRFLNPFETDSGELNVVSINEEHGLLACGTEDGVVEFW  202 (703)
T ss_pred             hcCeeeeeecCcCCccccccCCCccEEEeecCcceEEEEccccccccccccccccceeeeecCccceEEecccCceEEEe
Confidence                                   0001111   78888999999999998888999999999999999999999999999


Q ss_pred             ECCCCeeeeeee------cCCC-----CeeeEEEccCCCEEEEEeCCCeEEEEeCCC----------------------C
Q 042146          128 DIKTGKCLKVLP------AHSD-----PVTAIDFNRDGTMIVTSSYDGLYRILDAST----------------------P  174 (262)
Q Consensus       128 d~~~~~~~~~~~------~~~~-----~v~~~~~~~~~~~l~~~~~dg~i~~~d~~~----------------------~  174 (262)
                      |.++...+..+.      .|.+     .|+++.|+.+|-.+++|..+|.+.+||++.                      .
T Consensus       203 DpR~ksrv~~l~~~~~v~s~pg~~~~~svTal~F~d~gL~~aVGts~G~v~iyDLRa~~pl~~kdh~~e~pi~~l~~~~~  282 (703)
T KOG2321|consen  203 DPRDKSRVGTLDAASSVNSHPGGDAAPSVTALKFRDDGLHVAVGTSTGSVLIYDLRASKPLLVKDHGYELPIKKLDWQDT  282 (703)
T ss_pred             cchhhhhheeeecccccCCCccccccCcceEEEecCCceeEEeeccCCcEEEEEcccCCceeecccCCccceeeeccccc
Confidence            999876655543      2333     399999999999999999999999999998                      1


Q ss_pred             CccEEEEEcCCCeEEEEecCCCceeeEEeccCCceeEEEEEEecCCCeeEEccccceEEEEEcCCCCeEEEeeecCCCcE
Q 042146          175 NGKFILVGTLDNTLRLWNYSTRKILKTYSGYTNSKYCISSTFSVTNGKYIVSHRDPVISVASHPAKNIIASGALDNDRTM  254 (262)
Q Consensus       175 ~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~d~d~~i  254 (262)
                      ++.--+.......++|||-.+|+....+.                       ....++.+++-|++.+++++-  +++.+
T Consensus       283 ~~q~~v~S~Dk~~~kiWd~~~Gk~~asiE-----------------------pt~~lND~C~~p~sGm~f~An--e~~~m  337 (703)
T KOG2321|consen  283 DQQNKVVSMDKRILKIWDECTGKPMASIE-----------------------PTSDLNDFCFVPGSGMFFTAN--ESSKM  337 (703)
T ss_pred             CCCceEEecchHHhhhcccccCCceeecc-----------------------ccCCcCceeeecCCceEEEec--CCCcc
Confidence            22223334445789999999999988776                       444588999999999999987  66665


Q ss_pred             EEE
Q 042146          255 KIW  257 (262)
Q Consensus       255 ~iw  257 (262)
                      ..|
T Consensus       338 ~~y  340 (703)
T KOG2321|consen  338 HTY  340 (703)
T ss_pred             eeE
Confidence            544

>KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning]

Probab=99.74  E-value=6.2e-17  Score=126.11  Aligned_cols=177  Identities=21%  Similarity=0.354  Sum_probs=137.4

Q ss_pred             CCCCceeeec----------ccccceecccCcCceEEEEEccCCCeEEEecCCCeEEEeecCCCCCCCCCCCCCCccccC
Q 042146            2 SSDRSLESFR----------PYTLTQTLNGHLRAVSYVKFSHDGRLLTSSSAEKTLLTYSLSSISNFDSTPPSPLQKFTG   71 (262)
Q Consensus         2 s~d~~i~~~~----------~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~   71 (262)
                      +.|++|..|.          ..+++.+|.+|.++|.|+++.+++..+++|+.||+|+.|++....  +.           
T Consensus       313 sed~~lk~WnLqk~~~s~~~~~epi~tfraH~gPVl~v~v~~n~~~~ysgg~Dg~I~~w~~p~n~--dp-----------  379 (577)
T KOG0642|consen  313 SEDGTLKLWNLQKAKKSAEKDVEPILTFRAHEGPVLCVVVPSNGEHCYSGGIDGTIRCWNLPPNQ--DP-----------  379 (577)
T ss_pred             ccccchhhhhhcccCCccccceeeeEEEecccCceEEEEecCCceEEEeeccCceeeeeccCCCC--Cc-----------
Confidence            4567766553          356888999999999999999999999999999999999875211  00           


Q ss_pred             CccccccceeEEEEecCCC-ccceecccCCcceEEEEEeCCCCEEEeecCCCeEEEEECCCCeee---------------
Q 042146           72 HEQGISDLATIRLWDVPTA-TSLKTLIGHTNYVFCINFNPQSNRIVSDTFNETIRIWDIKTGKCL---------------  135 (262)
Q Consensus        72 ~~~~v~~~~~i~v~d~~~~-~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~---------------  135 (262)
                                   +|.... .....+.+|.+.|+.+++++....|++++.||+++.|+.....+.               
T Consensus       380 -------------~ds~dp~vl~~~l~Ghtdavw~l~~s~~~~~Llscs~DgTvr~w~~~~~~~~~f~~~~e~g~Plsvd  446 (577)
T KOG0642|consen  380 -------------DDSYDPSVLSGTLLGHTDAVWLLALSSTKDRLLSCSSDGTVRLWEPTEESPCTFGEPKEHGYPLSVD  446 (577)
T ss_pred             -------------ccccCcchhccceeccccceeeeeecccccceeeecCCceEEeeccCCcCccccCCccccCCcceEe
Confidence                         111111 223457899999999999999999999999999999987543220               


Q ss_pred             -----------------------------eeee-------cCCCCeeeEEEccCCCEEEEEeCCCeEEEEeCCC------
Q 042146          136 -----------------------------KVLP-------AHSDPVTAIDFNRDGTMIVTSSYDGLYRILDAST------  173 (262)
Q Consensus       136 -----------------------------~~~~-------~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~d~~~------  173 (262)
                                                   ..+.       .-...+..+.++|.....+++..|+.|+++|..+      
T Consensus       447 ~~ss~~a~~~~s~~~~~~~~~~~ev~s~~~~~~s~~~~~~~~~~~in~vVs~~~~~~~~~~hed~~Ir~~dn~~~~~l~s  526 (577)
T KOG0642|consen  447 RTSSRPAHSLASFRFGYTSIDDMEVVSDLLIFESSASPGPRRYPQINKVVSHPTADITFTAHEDRSIRFFDNKTGKILHS  526 (577)
T ss_pred             eccchhHhhhhhcccccccchhhhhhhheeeccccCCCcccccCccceEEecCCCCeeEecccCCceecccccccccchh
Confidence                                         0000       0112467788899999999999999999999876      


Q ss_pred             --------------CCccEEEEEcCCCeEEEEecCCCceeeEEec
Q 042146          174 --------------PNGKFILVGTLDNTLRLWNYSTRKILKTYSG  204 (262)
Q Consensus       174 --------------~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~  204 (262)
                                    +++.+|++++.|+.+++|.+....++.....
T Consensus       527 ~~a~~~svtslai~~ng~~l~s~s~d~sv~l~kld~k~~~~es~~  571 (577)
T KOG0642|consen  527 MVAHKDSVTSLAIDPNGPYLMSGSHDGSVRLWKLDVKTCVLESTA  571 (577)
T ss_pred             eeeccceecceeecCCCceEEeecCCceeehhhccchheeecccc
Confidence                          8999999999999999999987777766654

>KOG0649 consensus WD40 repeat protein [General function prediction only]

Probab=99.74  E-value=3.5e-15  Score=105.29  Aligned_cols=181  Identities=16%  Similarity=0.246  Sum_probs=122.6

Q ss_pred             cceecccCcCceEEEEEccCCCeEEEecCCCeEEEeecCCCCC-------CCCCCCCC-----Cc-----cccCCcccc-
Q 042146           15 LTQTLNGHLRAVSYVKFSHDGRLLTSSSAEKTLLTYSLSSISN-------FDSTPPSP-----LQ-----KFTGHEQGI-   76 (262)
Q Consensus        15 ~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~-------~~~~~~~~-----~~-----~~~~~~~~v-   76 (262)
                      .+...++|.++|..++|+  ..+|++|+ ||.|+=|.-.+...       .+...+..     ..     .+......+ 
T Consensus        54 ~iv~eqahdgpiy~~~f~--d~~Lls~g-dG~V~gw~W~E~~es~~~K~lwe~~~P~~~~~~evPeINam~ldP~enSi~  130 (325)
T KOG0649|consen   54 KIVPEQAHDGPIYYLAFH--DDFLLSGG-DGLVYGWEWNEEEESLATKRLWEVKIPMQVDAVEVPEINAMWLDPSENSIL  130 (325)
T ss_pred             ceeeccccCCCeeeeeee--hhheeecc-CceEEEeeehhhhhhccchhhhhhcCccccCcccCCccceeEeccCCCcEE
Confidence            445568999999999998  44677776 59999887543211       01111100     00     011122222 


Q ss_pred             --ccceeEEEEecCCCccceecccCCcceEEEEEeCCCCEEEeecCCCeEEEEECCCCeeeeeeecC---------C-CC
Q 042146           77 --SDLATIRLWDVPTATSLKTLIGHTNYVFCINFNPQSNRIVSDTFNETIRIWDIKTGKCLKVLPAH---------S-DP  144 (262)
Q Consensus        77 --~~~~~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~---------~-~~  144 (262)
                        ...+.++-||+++|+..+.+++|.+.|.++.--.....+++|++||++++||.++++.+..+...         . ..
T Consensus       131 ~AgGD~~~y~~dlE~G~i~r~~rGHtDYvH~vv~R~~~~qilsG~EDGtvRvWd~kt~k~v~~ie~yk~~~~lRp~~g~w  210 (325)
T KOG0649|consen  131 FAGGDGVIYQVDLEDGRIQREYRGHTDYVHSVVGRNANGQILSGAEDGTVRVWDTKTQKHVSMIEPYKNPNLLRPDWGKW  210 (325)
T ss_pred             EecCCeEEEEEEecCCEEEEEEcCCcceeeeeeecccCcceeecCCCccEEEEeccccceeEEeccccChhhcCcccCce
Confidence              12338999999999999999999999999998666778999999999999999999988877432         1 23


Q ss_pred             eeeEEEccCCCEEEEEeCCCeEEEEeCCC-----------------CCccEEEEEcCCCeEEEEecCCCceeeEE
Q 042146          145 VTAIDFNRDGTMIVTSSYDGLYRILDAST-----------------PNGKFILVGTLDNTLRLWNYSTRKILKTY  202 (262)
Q Consensus       145 v~~~~~~~~~~~l~~~~~dg~i~~~d~~~-----------------~~~~~l~~~~~dg~i~i~d~~~~~~~~~~  202 (262)
                      |-+++.  +...|+.|+ ...+.+|.+++                 ...+.++++++...+.-|.+. |.+....
T Consensus       211 igala~--~edWlvCGg-Gp~lslwhLrsse~t~vfpipa~v~~v~F~~d~vl~~G~g~~v~~~~l~-Gvl~a~i  281 (325)
T KOG0649|consen  211 IGALAV--NEDWLVCGG-GPKLSLWHLRSSESTCVFPIPARVHLVDFVDDCVLIGGEGNHVQSYTLN-GVLQANI  281 (325)
T ss_pred             eEEEec--cCceEEecC-CCceeEEeccCCCceEEEecccceeEeeeecceEEEeccccceeeeeec-cEEEEec
Confidence            445544  455666554 57799999998                 245666777766677777654 4443333

>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only]

Probab=99.73  E-value=1.9e-16  Score=122.98  Aligned_cols=142  Identities=17%  Similarity=0.221  Sum_probs=97.0

Q ss_pred             cCceEEEEEccC-CCeEEEecCCCeEEEeecCCCCCCCCCCCCCCccccCCccccccceeEEEEec-CCCccceecccCC
Q 042146           23 LRAVSYVKFSHD-GRLLTSSSAEKTLLTYSLSSISNFDSTPPSPLQKFTGHEQGISDLATIRLWDV-PTATSLKTLIGHT  100 (262)
Q Consensus        23 ~~~v~~~~~~~~-~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~i~v~d~-~~~~~~~~~~~~~  100 (262)
                      +..|+|+.|-|- ...|+++-.+|.+.+||.+.........      +..+..+-  .-.|..|.- .+..++..+.--.
T Consensus       219 ktsvT~ikWvpg~~~~Fl~a~~sGnlyly~~~~~~~~t~p~------~~~~k~~~--~f~i~t~ksk~~rNPv~~w~~~~  290 (636)
T KOG2394|consen  219 KSSVTCIKWVPGSDSLFLVAHASGNLYLYDKEIVCGATAPS------YQALKDGD--QFAILTSKSKKTRNPVARWHIGE  290 (636)
T ss_pred             ccceEEEEEEeCCCceEEEEEecCceEEeeccccccCCCCc------ccccCCCC--eeEEeeeeccccCCccceeEecc
Confidence            478999999884 4467777889999999874322111111      11100000  001222221 1224444454455


Q ss_pred             cceEEEEEeCCCCEEEeecCCCeEEEEECCCCeeeeeeecCCCCeeeEEEccCCCEEEEEeCCCeEEEEeCC
Q 042146          101 NYVFCINFNPQSNRIVSDTFNETIRIWDIKTGKCLKVLPAHSDPVTAIDFNRDGTMIVTSSYDGLYRILDAS  172 (262)
Q Consensus       101 ~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~d~~  172 (262)
                      ..|+..+|+|||++||+.+.||.++|+|..+.+++-.++..-+...|++|||||+++++|+.|.-|.+|.+.
T Consensus       291 g~in~f~FS~DG~~LA~VSqDGfLRvF~fdt~eLlg~mkSYFGGLLCvcWSPDGKyIvtGGEDDLVtVwSf~  362 (636)
T KOG2394|consen  291 GSINEFAFSPDGKYLATVSQDGFLRIFDFDTQELLGVMKSYFGGLLCVCWSPDGKYIVTGGEDDLVTVWSFE  362 (636)
T ss_pred             ccccceeEcCCCceEEEEecCceEEEeeccHHHHHHHHHhhccceEEEEEcCCccEEEecCCcceEEEEEec
Confidence            689999999999999999999999999999988877777777889999999999888877777666555544

>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]

Probab=99.73  E-value=2.9e-16  Score=125.20  Aligned_cols=194  Identities=19%  Similarity=0.383  Sum_probs=144.4

Q ss_pred             ceEEEEEccCCCeEEEecCCCeEEEeecCCCCCCCCCCCCCCccccCCccccccceeEEEEecCCCccceecccCCcceE
Q 042146           25 AVSYVKFSHDGRLLTSSSAEKTLLTYSLSSISNFDSTPPSPLQKFTGHEQGISDLATIRLWDVPTATSLKTLIGHTNYVF  104 (262)
Q Consensus        25 ~v~~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~i~v~d~~~~~~~~~~~~~~~~v~  104 (262)
                      .|..++|-|||..|+.+..+ .                                   +.+||...|..+.++++|++.|.
T Consensus        14 ci~d~afkPDGsqL~lAAg~-r-----------------------------------lliyD~ndG~llqtLKgHKDtVy   57 (1081)
T KOG1538|consen   14 CINDIAFKPDGTQLILAAGS-R-----------------------------------LLVYDTSDGTLLQPLKGHKDTVY   57 (1081)
T ss_pred             chheeEECCCCceEEEecCC-E-----------------------------------EEEEeCCCcccccccccccceEE
Confidence            79999999999988776644 2                                   55668888999999999999999


Q ss_pred             EEEEeCCCCEEEeecCCCeEEEEECCCCeeeeeeecCCCCeeeEEEccCCCEEEEEeCCCeEEEEeCCC-----------
Q 042146          105 CINFNPQSNRIVSDTFNETIRIWDIKTGKCLKVLPAHSDPVTAIDFNRDGTMIVTSSYDGLYRILDAST-----------  173 (262)
Q Consensus       105 ~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~d~~~-----------  173 (262)
                      |++|+.+|+.+++|+.|..|.+|+..-.- +..+ .|...|.||.|.|-...|++|+... .-+|....           
T Consensus        58 cVAys~dGkrFASG~aDK~VI~W~~klEG-~LkY-SH~D~IQCMsFNP~~h~LasCsLsd-FglWS~~qK~V~K~kss~R  134 (1081)
T KOG1538|consen   58 CVAYAKDGKRFASGSADKSVIIWTSKLEG-ILKY-SHNDAIQCMSFNPITHQLASCSLSD-FGLWSPEQKSVSKHKSSSR  134 (1081)
T ss_pred             EEEEccCCceeccCCCceeEEEecccccc-eeee-ccCCeeeEeecCchHHHhhhcchhh-ccccChhhhhHHhhhhhee
Confidence            99999999999999999999999854222 2233 5899999999999988999988543 34666443           


Q ss_pred             -------CCccEEEEEcCCCeEEEEecCCCceeeEEe---ccCCceeEEEEEEecC---------------------CCe
Q 042146          174 -------PNGKFILVGTLDNTLRLWNYSTRKILKTYS---GYTNSKYCISSTFSVT---------------------NGK  222 (262)
Q Consensus       174 -------~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~---~~~~~~~~~~~~~~~~---------------------~~~  222 (262)
                             .||++++.|-.+|+|.+-+- +++.-..+.   +...+++.+.......                     +++
T Consensus       135 ~~~CsWtnDGqylalG~~nGTIsiRNk-~gEek~~I~Rpgg~Nspiwsi~~~p~sg~G~~di~aV~DW~qTLSFy~LsG~  213 (1081)
T KOG1538|consen  135 IICCSWTNDGQYLALGMFNGTISIRNK-NGEEKVKIERPGGSNSPIWSICWNPSSGEGRNDILAVADWGQTLSFYQLSGK  213 (1081)
T ss_pred             EEEeeecCCCcEEEEeccCceEEeecC-CCCcceEEeCCCCCCCCceEEEecCCCCCCccceEEEEeccceeEEEEecce
Confidence                   78999999999999998764 344433333   2445555555433322                     222


Q ss_pred             eEEc---cccceEEEEEcCCCCeEEEeeecCCCcEEEEeec
Q 042146          223 YIVS---HRDPVISVASHPAKNIIASGALDNDRTMKIWTQE  260 (262)
Q Consensus       223 ~~~~---~~~~v~~~~~~p~~~~l~~~~~d~d~~i~iw~~~  260 (262)
                      ++..   -.-...|+.+.|+|.++..||  .|+.+++|..+
T Consensus       214 ~Igk~r~L~FdP~CisYf~NGEy~LiGG--sdk~L~~fTR~  252 (1081)
T KOG1538|consen  214 QIGKDRALNFDPCCISYFTNGEYILLGG--SDKQLSLFTRD  252 (1081)
T ss_pred             eecccccCCCCchhheeccCCcEEEEcc--CCCceEEEeec
Confidence            2211   112356888889999999999  88999988643

>KOG1188 consensus WD40 repeat protein [General function prediction only]

Probab=99.72  E-value=1.2e-16  Score=117.58  Aligned_cols=126  Identities=24%  Similarity=0.441  Sum_probs=105.7

Q ss_pred             CEEEeecCCCeEEEEECCCCeeeeeeecCCCCeeeEEEcc--CCCEEEEEeCCCeEEEEeCCC-----------------
Q 042146          113 NRIVSDTFNETIRIWDIKTGKCLKVLPAHSDPVTAIDFNR--DGTMIVTSSYDGLYRILDAST-----------------  173 (262)
Q Consensus       113 ~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~--~~~~l~~~~~dg~i~~~d~~~-----------------  173 (262)
                      ..++++.+.|.|++||..+++.+..++++...++.+.|..  .+..+.+|+.||+|++||+|.                 
T Consensus        41 ~~vav~lSngsv~lyd~~tg~~l~~fk~~~~~~N~vrf~~~ds~h~v~s~ssDG~Vr~wD~Rs~~e~a~~~~~~~~~~~f  120 (376)
T KOG1188|consen   41 TAVAVSLSNGSVRLYDKGTGQLLEEFKGPPATTNGVRFISCDSPHGVISCSSDGTVRLWDIRSQAESARISWTQQSGTPF  120 (376)
T ss_pred             eeEEEEecCCeEEEEeccchhhhheecCCCCcccceEEecCCCCCeeEEeccCCeEEEEEeecchhhhheeccCCCCCcc
Confidence            5688888999999999999999999999999999999987  466899999999999999998                 


Q ss_pred             ------CCccEEEEEc----CCCeEEEEecCCCce-eeEEeccCCceeEEEEEEecCCCeeEEccccceEEEEEcCCC-C
Q 042146          174 ------PNGKFILVGT----LDNTLRLWNYSTRKI-LKTYSGYTNSKYCISSTFSVTNGKYIVSHRDPVISVASHPAK-N  241 (262)
Q Consensus       174 ------~~~~~l~~~~----~dg~i~i~d~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~-~  241 (262)
                            .+++.+++|+    .+-.|.+||+|..+. +..+..                     .|.+-|+++.|+|.. +
T Consensus       121 ~~ld~nck~~ii~~GtE~~~s~A~v~lwDvR~~qq~l~~~~e---------------------SH~DDVT~lrFHP~~pn  179 (376)
T KOG1188|consen  121 ICLDLNCKKNIIACGTELTRSDASVVLWDVRSEQQLLRQLNE---------------------SHNDDVTQLRFHPSDPN  179 (376)
T ss_pred             eEeeccCcCCeEEeccccccCceEEEEEEeccccchhhhhhh---------------------hccCcceeEEecCCCCC
Confidence                  1456666665    345789999998665 554432                     199999999999975 5


Q ss_pred             eEEEeeecCCCcEEEEeecc
Q 042146          242 IIASGALDNDRTMKIWTQEK  261 (262)
Q Consensus       242 ~l~~~~~d~d~~i~iw~~~~  261 (262)
                      +|++||  -||-|.|||+++
T Consensus       180 lLlSGS--vDGLvnlfD~~~  197 (376)
T KOG1188|consen  180 LLLSGS--VDGLVNLFDTKK  197 (376)
T ss_pred             eEEeec--ccceEEeeecCC
Confidence            888999  899999999975

>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]

Probab=99.71  E-value=7.7e-16  Score=119.81  Aligned_cols=229  Identities=12%  Similarity=0.171  Sum_probs=150.7

Q ss_pred             cCcCceEEEEEccCCCeEEEecCCCeEEEeecCCCCCCCCCCCC-----CCccc-----cCCcccc----ccceeEEEEe
Q 042146           21 GHLRAVSYVKFSHDGRLLTSSSAEKTLLTYSLSSISNFDSTPPS-----PLQKF-----TGHEQGI----SDLATIRLWD   86 (262)
Q Consensus        21 ~h~~~v~~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~-----~~~~~-----~~~~~~v----~~~~~i~v~d   86 (262)
                      .|...|.|+.|+.+...+.+++.+..+.-|++..........+.     .....     .+.....    +..+.+.+.+
T Consensus        12 r~~e~vc~v~w~~~eei~~~~dDh~~~~~~~~~~~s~~~~~~p~df~pt~~h~~~rs~~~g~~~d~~~i~s~DGkf~il~   91 (737)
T KOG1524|consen   12 RNSEKVCCVDWSSNEEIYFVSDDHQIFKWSDVSRDSVEVAKLPDDFVPTDMHLGGRSSGGGKGSDTLLICSNDGRFVILN   91 (737)
T ss_pred             ccceeEEeecccccceEEEeccCceEEEeecccchhhhhhhCCcccCCccccccccccCCCCCcceEEEEcCCceEEEec
Confidence            57777889999998887766665555555555432211111110     00000     0011100    1112333333


Q ss_pred             cCCCccceecccCCcceEEEEEeCCCCEEEeecCCCeEEEEECCCCeeeeeeecCCCCeeeEEEccCCCEEEEEeCCC--
Q 042146           87 VPTATSLKTLIGHTNYVFCINFNPQSNRIVSDTFNETIRIWDIKTGKCLKVLPAHSDPVTAIDFNRDGTMIVTSSYDG--  164 (262)
Q Consensus        87 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg--  164 (262)
                       ..++.......|.+.+.+-.|+|+|.-|+++++||.|++|. ++|....++.....+|.|++|.|+++.++-|..+.  
T Consensus        92 -k~~rVE~sv~AH~~A~~~gRW~~dGtgLlt~GEDG~iKiWS-rsGMLRStl~Q~~~~v~c~~W~p~S~~vl~c~g~h~~  169 (737)
T KOG1524|consen   92 -KSARVERSISAHAAAISSGRWSPDGAGLLTAGEDGVIKIWS-RSGMLRSTVVQNEESIRCARWAPNSNSIVFCQGGHIS  169 (737)
T ss_pred             -ccchhhhhhhhhhhhhhhcccCCCCceeeeecCCceEEEEe-ccchHHHHHhhcCceeEEEEECCCCCceEEecCCeEE
Confidence             34556667788999999999999999999999999999998 77776666666678999999999877555443321  


Q ss_pred             --------eEEEEeCCC---------CCccEEEEEcCCCeEEEEecCCCceeeEEeccCCceeEEEEEEecCCCeeEEc-
Q 042146          165 --------LYRILDAST---------PNGKFILVGTLDNTLRLWNYSTRKILKTYSGYTNSKYCISSTFSVTNGKYIVS-  226 (262)
Q Consensus       165 --------~i~~~d~~~---------~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-  226 (262)
                              .+.-|....         +..+.+++|++|-..+|||-. |+.+..-..|+.++..+  +|.++....+.. 
T Consensus       170 IKpL~~n~k~i~WkAHDGiiL~~~W~~~s~lI~sgGED~kfKvWD~~-G~~Lf~S~~~ey~ITSv--a~npd~~~~v~S~  246 (737)
T KOG1524|consen  170 IKPLAANSKIIRWRAHDGLVLSLSWSTQSNIIASGGEDFRFKIWDAQ-GANLFTSAAEEYAITSV--AFNPEKDYLLWSY  246 (737)
T ss_pred             EeecccccceeEEeccCcEEEEeecCccccceeecCCceeEEeeccc-CcccccCChhccceeee--eeccccceeeeee
Confidence                    122233222         678899999999999999964 67776666666655554  444443333333 


Q ss_pred             --------cccceEEEEEcCCCCeEEEeeecCCCcEEE
Q 042146          227 --------HRDPVISVASHPAKNIIASGALDNDRTMKI  256 (262)
Q Consensus       227 --------~~~~v~~~~~~p~~~~l~~~~~d~d~~i~i  256 (262)
                              ..+.|..++|||||..++.|.  ..|.+.+
T Consensus       247 nt~R~~~p~~GSifnlsWS~DGTQ~a~gt--~~G~v~~  282 (737)
T KOG1524|consen  247 NTARFSSPRVGSIFNLSWSADGTQATCGT--STGQLIV  282 (737)
T ss_pred             eeeeecCCCccceEEEEEcCCCceeeccc--cCceEEE
Confidence                    457899999999999999998  7777643

>KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton]

Probab=99.71  E-value=6.8e-15  Score=119.26  Aligned_cols=225  Identities=17%  Similarity=0.171  Sum_probs=152.9

Q ss_pred             ccccceecccCcCceEEEEEccC-CCeEEEecCCCeEEEeecCCCCCCCCC--------CCCCCc--cccC--Cc---cc
Q 042146           12 PYTLTQTLNGHLRAVSYVKFSHD-GRLLTSSSAEKTLLTYSLSSISNFDST--------PPSPLQ--KFTG--HE---QG   75 (262)
Q Consensus        12 ~~~~~~~~~~h~~~v~~~~~~~~-~~~l~s~~~d~~i~iw~~~~~~~~~~~--------~~~~~~--~~~~--~~---~~   75 (262)
                      +.++...+. -..+|.|+.|+|. ..++|.|..+|+|.+||+.........        ...+..  .+..  +.   ..
T Consensus       232 p~~Pe~~~~-~~s~v~~~~f~p~~p~ll~gG~y~GqV~lWD~~~~~~~~~s~ls~~~~sh~~~v~~vvW~~~~~~~~f~s  310 (555)
T KOG1587|consen  232 PNTPELVLE-SPSEVTCLKFCPFDPNLLAGGCYNGQVVLWDLRKGSDTPPSGLSALEVSHSEPVTAVVWLQNEHNTEFFS  310 (555)
T ss_pred             CCCceEEEe-cCCceeEEEeccCCcceEEeeccCceEEEEEccCCCCCCCcccccccccCCcCeEEEEEeccCCCCceEE
Confidence            445555554 4688999999994 667888899999999999875432100        000100  0111  11   12


Q ss_pred             cccceeEEEEecCCCccce------ecc------cCCcceEEEEEeC-CCCEEEeecCCCeEEEEECC---CCe-----e
Q 042146           76 ISDLATIRLWDVPTATSLK------TLI------GHTNYVFCINFNP-QSNRIVSDTFNETIRIWDIK---TGK-----C  134 (262)
Q Consensus        76 v~~~~~i~v~d~~~~~~~~------~~~------~~~~~v~~~~~~~-~~~~l~~~~~dg~i~vwd~~---~~~-----~  134 (262)
                      +..++.|..|+++.-....      ...      .....+++++|.| +...++.|+..|.|.--+-.   ...     .
T Consensus       311 ~ssDG~i~~W~~~~l~~P~e~~~~~~~~~~~~~~~~~~~~t~~~F~~~~p~~FiVGTe~G~v~~~~r~g~~~~~~~~~~~  390 (555)
T KOG1587|consen  311 LSSDGSICSWDTDMLSLPVEGLLLESKKHKGQQSSKAVGATSLKFEPTDPNHFIVGTEEGKVYKGCRKGYTPAPEVSYKG  390 (555)
T ss_pred             EecCCcEeeeeccccccchhhcccccccccccccccccceeeEeeccCCCceEEEEcCCcEEEEEeccCCcccccccccc
Confidence            2345588999876433211      111      1234689999998 67789999999998874322   211     1


Q ss_pred             eeeeecCCCCeeeEEEccCCCEEEEEeCCCeEEEEeCCC----------------------CCccEEEEEcCCCeEEEEe
Q 042146          135 LKVLPAHSDPVTAIDFNRDGTMIVTSSYDGLYRILDAST----------------------PNGKFILVGTLDNTLRLWN  192 (262)
Q Consensus       135 ~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~d~~~----------------------~~~~~l~~~~~dg~i~i~d  192 (262)
                      ...+..|.++|+++.++|-+..++..+.|.++++|....                      .....++++..+|.|.+||
T Consensus       391 ~~~~~~h~g~v~~v~~nPF~~k~fls~gDW~vriWs~~~~~~Pl~~~~~~~~~v~~vaWSptrpavF~~~d~~G~l~iWD  470 (555)
T KOG1587|consen  391 HSTFITHIGPVYAVSRNPFYPKNFLSVGDWTVRIWSEDVIASPLLSLDSSPDYVTDVAWSPTRPAVFATVDGDGNLDIWD  470 (555)
T ss_pred             cccccccCcceEeeecCCCccceeeeeccceeEeccccCCCCcchhhhhccceeeeeEEcCcCceEEEEEcCCCceehhh
Confidence            334556889999999999776555555599999999873                      2345788888999999999


Q ss_pred             cCCCc--eeeEEeccCCceeEEEEEEecCCCeeEEccccceEEEEEcCCCCeEEEeeecCCCcEEEEeecc
Q 042146          193 YSTRK--ILKTYSGYTNSKYCISSTFSVTNGKYIVSHRDPVISVASHPAKNIIASGALDNDRTMKIWTQEK  261 (262)
Q Consensus       193 ~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~d~d~~i~iw~~~~  261 (262)
                      +....  ++.+...                      +....+.+.|++.|+.|++|.  ..|++.+|++..
T Consensus       471 Ll~~~~~Pv~s~~~----------------------~~~~l~~~~~s~~g~~lavGd--~~G~~~~~~l~~  517 (555)
T KOG1587|consen  471 LLQDDEEPVLSQKV----------------------CSPALTRVRWSPNGKLLAVGD--ANGTTHILKLSE  517 (555)
T ss_pred             hhccccCCcccccc----------------------cccccceeecCCCCcEEEEec--CCCcEEEEEcCc
Confidence            97543  3333332                      445667888999999999999  899999999853

>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.70  E-value=5.6e-16  Score=116.86  Aligned_cols=168  Identities=20%  Similarity=0.296  Sum_probs=118.4

Q ss_pred             CCCceeeec--ccccceecccCcCceEEEEEccCCCeEEEecCCCeEEEeecCCCCCCCCCCCCC----C--ccccCCc-
Q 042146            3 SDRSLESFR--PYTLTQTLNGHLRAVSYVKFSHDGRLLTSSSAEKTLLTYSLSSISNFDSTPPSP----L--QKFTGHE-   73 (262)
Q Consensus         3 ~d~~i~~~~--~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~----~--~~~~~~~-   73 (262)
                      .||+++.|+  ....+....+|.+.|.++.|+|||+.|++-+.| ..+||+.+.........+..    .  ..+.... 
T Consensus       164 ~dg~lRv~~~Ps~~t~l~e~~~~~eV~DL~FS~dgk~lasig~d-~~~VW~~~~g~~~a~~t~~~k~~~~~~cRF~~d~~  242 (398)
T KOG0771|consen  164 TDGTLRVWEWPSMLTILEEIAHHAEVKDLDFSPDGKFLASIGAD-SARVWSVNTGAALARKTPFSKDEMFSSCRFSVDNA  242 (398)
T ss_pred             ccceEEEEecCcchhhhhhHhhcCccccceeCCCCcEEEEecCC-ceEEEEeccCchhhhcCCcccchhhhhceecccCC
Confidence            578888876  556777788999999999999999999999999 99999998764333222111    0  1111101 


Q ss_pred             -ccccc-----------ceeEEEEecCCCccceecccCCcceEEEEEeCCCCEEEeecCCCeEEEEECCCCeeeeee-ec
Q 042146           74 -QGISD-----------LATIRLWDVPTATSLKTLIGHTNYVFCINFNPQSNRIVSDTFNETIRIWDIKTGKCLKVL-PA  140 (262)
Q Consensus        74 -~~v~~-----------~~~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~-~~  140 (262)
                       ..+..           ...+.+|+-..--...+...-...|++++++++|++++.|+.||.|-|++..+.+.++.. +.
T Consensus       243 ~~~l~laa~~~~~~~v~~~~~~~w~~~~~l~~~~~~~~~~siSsl~VS~dGkf~AlGT~dGsVai~~~~~lq~~~~vk~a  322 (398)
T KOG0771|consen  243 QETLRLAASQFPGGGVRLCDISLWSGSNFLRLRKKIKRFKSISSLAVSDDGKFLALGTMDGSVAIYDAKSLQRLQYVKEA  322 (398)
T ss_pred             CceEEEEEecCCCCceeEEEeeeeccccccchhhhhhccCcceeEEEcCCCcEEEEeccCCcEEEEEeceeeeeEeehhh
Confidence             01100           113444443211112222223457999999999999999999999999999888776655 56


Q ss_pred             CCCCeeeEEEccCCCEEEEEeCCCeEEEEeC
Q 042146          141 HSDPVTAIDFNRDGTMIVTSSYDGLYRILDA  171 (262)
Q Consensus       141 ~~~~v~~~~~~~~~~~l~~~~~dg~i~~~d~  171 (262)
                      |...|+.+.|+|+.+++++.+.+....+..+
T Consensus       323 H~~~VT~ltF~Pdsr~~~svSs~~~~~v~~l  353 (398)
T KOG0771|consen  323 HLGFVTGLTFSPDSRYLASVSSDNEAAVTKL  353 (398)
T ss_pred             heeeeeeEEEcCCcCcccccccCCceeEEEE
Confidence            9999999999999999999888877665543

>KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton]

Probab=99.69  E-value=4e-15  Score=108.80  Aligned_cols=154  Identities=16%  Similarity=0.255  Sum_probs=125.7

Q ss_pred             ccccceecccCcCceEEEEEccCCCeEEEecCCCeEEEeecCCCCCCCCCCCCCCccccCCccccccceeEEEEecCCCc
Q 042146           12 PYTLTQTLNGHLRAVSYVKFSHDGRLLTSSSAEKTLLTYSLSSISNFDSTPPSPLQKFTGHEQGISDLATIRLWDVPTAT   91 (262)
Q Consensus        12 ~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~i~v~d~~~~~   91 (262)
                      .++..++++.|...|++++|+|..+.|++++.|+.-++|.....                                .+.+
T Consensus        44 ~w~~~htls~Hd~~vtgvdWap~snrIvtcs~drnayVw~~~~~--------------------------------~~Wk   91 (361)
T KOG1523|consen   44 LWEPAHTLSEHDKIVTGVDWAPKSNRIVTCSHDRNAYVWTQPSG--------------------------------GTWK   91 (361)
T ss_pred             CceeceehhhhCcceeEEeecCCCCceeEccCCCCccccccCCC--------------------------------Ceec
Confidence            47788999999999999999999999999999999999954210                                1344


Q ss_pred             cceecccCCcceEEEEEeCCCCEEEeecCCCeEEEEECCCCeee----eeeecCCCCeeeEEEccCCCEEEEEeCCCeEE
Q 042146           92 SLKTLIGHTNYVFCINFNPQSNRIVSDTFNETIRIWDIKTGKCL----KVLPAHSDPVTAIDFNRDGTMIVTSSYDGLYR  167 (262)
Q Consensus        92 ~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~----~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~  167 (262)
                      +...+..++...+++.|+|.++.+++|+....|.||-++...-=    +.-+.+.+.|+++.|+|++-+|++|+.|+..+
T Consensus        92 ptlvLlRiNrAAt~V~WsP~enkFAVgSgar~isVcy~E~ENdWWVsKhikkPirStv~sldWhpnnVLlaaGs~D~k~r  171 (361)
T KOG1523|consen   92 PTLVLLRINRAATCVKWSPKENKFAVGSGARLISVCYYEQENDWWVSKHIKKPIRSTVTSLDWHPNNVLLAAGSTDGKCR  171 (361)
T ss_pred             cceeEEEeccceeeEeecCcCceEEeccCccEEEEEEEecccceehhhhhCCccccceeeeeccCCcceecccccCccee
Confidence            55556678899999999999999999999999999988754321    23345678899999999999999999999999


Q ss_pred             EEeCCC--------------------------------------CCccEEEEEcCCCeEEEEecCCCc
Q 042146          168 ILDAST--------------------------------------PNGKFILVGTLDNTLRLWNYSTRK  197 (262)
Q Consensus       168 ~~d~~~--------------------------------------~~~~~l~~~~~dg~i~i~d~~~~~  197 (262)
                      +|...-                                      ++|..|+-.+.|+.+.+-|.....
T Consensus       172 VfSayIK~Vdekpap~pWgsk~PFG~lm~E~~~~ggwvh~v~fs~sG~~lawv~Hds~v~~~da~~p~  239 (361)
T KOG1523|consen  172 VFSAYIKGVDEKPAPTPWGSKMPFGQLMSEASSSGGWVHGVLFSPSGNRLAWVGHDSTVSFVDAAGPS  239 (361)
T ss_pred             EEEEeeeccccCCCCCCCccCCcHHHHHHhhccCCCceeeeEeCCCCCEeeEecCCCceEEeecCCCc
Confidence            997432                                      678888888888888887766543

>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]

Probab=99.69  E-value=2.6e-14  Score=104.52  Aligned_cols=192  Identities=15%  Similarity=0.258  Sum_probs=121.0

Q ss_pred             ceEEEEEccCCCeEEEecCCCeEEEeecCCCCCCCCCC----CCC----------CccccCCccccccceeEEEEecCCC
Q 042146           25 AVSYVKFSHDGRLLTSSSAEKTLLTYSLSSISNFDSTP----PSP----------LQKFTGHEQGISDLATIRLWDVPTA   90 (262)
Q Consensus        25 ~v~~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~----~~~----------~~~~~~~~~~v~~~~~i~v~d~~~~   90 (262)
                      ...+++|+.|...+++|.++| .+||+++..+......    +..          +....+...+-..-..|.|||-...
T Consensus         7 ~~lsvs~NQD~ScFava~~~G-friyn~~P~ke~~~r~~~~~G~~~veMLfR~N~laLVGGg~~pky~pNkviIWDD~k~   85 (346)
T KOG2111|consen    7 KTLSVSFNQDHSCFAVATDTG-FRIYNCDPFKESASRQFIDGGFKIVEMLFRSNYLALVGGGSRPKYPPNKVIIWDDLKE   85 (346)
T ss_pred             ceeEEEEccCCceEEEEecCc-eEEEecCchhhhhhhccccCchhhhhHhhhhceEEEecCCCCCCCCCceEEEEecccC
Confidence            355699999999898887655 7999987743311111    000          0011122223344447888885555


Q ss_pred             ccceecccCCcceEEEEEeCCC------------------------------------------CEEEe-ecCCCeEEEE
Q 042146           91 TSLKTLIGHTNYVFCINFNPQS------------------------------------------NRIVS-DTFNETIRIW  127 (262)
Q Consensus        91 ~~~~~~~~~~~~v~~~~~~~~~------------------------------------------~~l~~-~~~dg~i~vw  127 (262)
                      .++.++. ...+|.++.+.++.                                          .+|+. |-.-|.|.|-
T Consensus        86 ~~i~el~-f~~~I~~V~l~r~riVvvl~~~I~VytF~~n~k~l~~~et~~NPkGlC~~~~~~~k~~LafPg~k~GqvQi~  164 (346)
T KOG2111|consen   86 RCIIELS-FNSEIKAVKLRRDRIVVVLENKIYVYTFPDNPKLLHVIETRSNPKGLCSLCPTSNKSLLAFPGFKTGQVQIV  164 (346)
T ss_pred             cEEEEEE-eccceeeEEEcCCeEEEEecCeEEEEEcCCChhheeeeecccCCCceEeecCCCCceEEEcCCCccceEEEE
Confidence            5554443 34445555554321                                          11111 2223444444


Q ss_pred             ECCCCee--eeeeecCCCCeeeEEEccCCCEEEEEeCCCeEEEEeCCCCCccEEEEEcCCCeEEEEecCCCceeeEEecc
Q 042146          128 DIKTGKC--LKVLPAHSDPVTAIDFNRDGTMIVTSSYDGLYRILDASTPNGKFILVGTLDNTLRLWNYSTRKILKTYSGY  205 (262)
Q Consensus       128 d~~~~~~--~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~  205 (262)
                      |+...+.  ...+.+|.+.|.|++.+.+|.++|++|..|++                     |||||..+|+++.+++..
T Consensus       165 dL~~~~~~~p~~I~AH~s~Iacv~Ln~~Gt~vATaStkGTL---------------------IRIFdt~~g~~l~E~RRG  223 (346)
T KOG2111|consen  165 DLASTKPNAPSIINAHDSDIACVALNLQGTLVATASTKGTL---------------------IRIFDTEDGTLLQELRRG  223 (346)
T ss_pred             EhhhcCcCCceEEEcccCceeEEEEcCCccEEEEeccCcEE---------------------EEEEEcCCCcEeeeeecC
Confidence            4443322  24455677777777777777777776666654                     899999999999999753


Q ss_pred             CCceeEEEEEEecCCCeeEEccccceEEEEEcCCCCeEEEeeecCCCcEEEEeecc
Q 042146          206 TNSKYCISSTFSVTNGKYIVSHRDPVISVASHPAKNIIASGALDNDRTMKIWTQEK  261 (262)
Q Consensus       206 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~d~d~~i~iw~~~~  261 (262)
                      .                    ....|.+|+|||+..+||++|  +.|+|+||.+..
T Consensus       224 ~--------------------d~A~iy~iaFSp~~s~LavsS--dKgTlHiF~l~~  257 (346)
T KOG2111|consen  224 V--------------------DRADIYCIAFSPNSSWLAVSS--DKGTLHIFSLRD  257 (346)
T ss_pred             C--------------------chheEEEEEeCCCccEEEEEc--CCCeEEEEEeec
Confidence            3                    556799999999999999999  899999998863

>KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton]

Probab=99.68  E-value=9.3e-15  Score=118.47  Aligned_cols=180  Identities=21%  Similarity=0.328  Sum_probs=130.5

Q ss_pred             eEEEEecCCCccceecccCCcceEEEEEeC-CCCEEEeecCCCeEEEEECCCCee--eeee----ecCCCCeeeEEEccC
Q 042146           81 TIRLWDVPTATSLKTLIGHTNYVFCINFNP-QSNRIVSDTFNETIRIWDIKTGKC--LKVL----PAHSDPVTAIDFNRD  153 (262)
Q Consensus        81 ~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~dg~i~vwd~~~~~~--~~~~----~~~~~~v~~~~~~~~  153 (262)
                      .+.+|++...........-...|.|++|+| +..+++.|+.+|.|.+||++.+..  ...+    ..|..+++.+.|.++
T Consensus       223 ~~~vW~~~~p~~Pe~~~~~~s~v~~~~f~p~~p~ll~gG~y~GqV~lWD~~~~~~~~~s~ls~~~~sh~~~v~~vvW~~~  302 (555)
T KOG1587|consen  223 VLLVWSLKNPNTPELVLESPSEVTCLKFCPFDPNLLAGGCYNGQVVLWDLRKGSDTPPSGLSALEVSHSEPVTAVVWLQN  302 (555)
T ss_pred             eEEEEecCCCCCceEEEecCCceeEEEeccCCcceEEeeccCceEEEEEccCCCCCCCcccccccccCCcCeEEEEEecc
Confidence            589999987744433334567899999999 778899999999999999987654  2222    358889999999875


Q ss_pred             CC--EEEEEeCCCeEEEEeCCC---------------------------------CCccEEEEEcCCCeEEEEecCCC--
Q 042146          154 GT--MIVTSSYDGLYRILDAST---------------------------------PNGKFILVGTLDNTLRLWNYSTR--  196 (262)
Q Consensus       154 ~~--~l~~~~~dg~i~~~d~~~---------------------------------~~~~~l~~~~~dg~i~i~d~~~~--  196 (262)
                      ..  -|++++.||.|..|+++.                                 .+...+++|+++|.|.--+....  
T Consensus       303 ~~~~~f~s~ssDG~i~~W~~~~l~~P~e~~~~~~~~~~~~~~~~~~~~t~~~F~~~~p~~FiVGTe~G~v~~~~r~g~~~  382 (555)
T KOG1587|consen  303 EHNTEFFSLSSDGSICSWDTDMLSLPVEGLLLESKKHKGQQSSKAVGATSLKFEPTDPNHFIVGTEEGKVYKGCRKGYTP  382 (555)
T ss_pred             CCCCceEEEecCCcEeeeeccccccchhhcccccccccccccccccceeeEeeccCCCceEEEEcCCcEEEEEeccCCcc
Confidence            44  499999999999999876                                 45677999999999887433322  


Q ss_pred             ------ceeeEEeccCCceeEEEEEEecCCCeeEEc---------------------cccceEEEEEcCCCCeEEEeeec
Q 042146          197 ------KILKTYSGYTNSKYCISSTFSVTNGKYIVS---------------------HRDPVISVASHPAKNIIASGALD  249 (262)
Q Consensus       197 ------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------------~~~~v~~~~~~p~~~~l~~~~~d  249 (262)
                            +....+..|...+.++..........+..+                     +...|++++|||....++.... 
T Consensus       383 ~~~~~~~~~~~~~~h~g~v~~v~~nPF~~k~fls~gDW~vriWs~~~~~~Pl~~~~~~~~~v~~vaWSptrpavF~~~d-  461 (555)
T KOG1587|consen  383 APEVSYKGHSTFITHIGPVYAVSRNPFYPKNFLSVGDWTVRIWSEDVIASPLLSLDSSPDYVTDVAWSPTRPAVFATVD-  461 (555)
T ss_pred             cccccccccccccccCcceEeeecCCCccceeeeeccceeEeccccCCCCcchhhhhccceeeeeEEcCcCceEEEEEc-
Confidence                  123345556667777665444333333333                     4556999999998875554432 


Q ss_pred             CCCcEEEEeecc
Q 042146          250 NDRTMKIWTQEK  261 (262)
Q Consensus       250 ~d~~i~iw~~~~  261 (262)
                      .||.|.+||+..
T Consensus       462 ~~G~l~iWDLl~  473 (555)
T KOG1587|consen  462 GDGNLDIWDLLQ  473 (555)
T ss_pred             CCCceehhhhhc
Confidence            699999999864

>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]

Probab=99.67  E-value=2e-14  Score=120.09  Aligned_cols=218  Identities=18%  Similarity=0.299  Sum_probs=146.4

Q ss_pred             cCcCceEEEEEccCCCeEEEecCCCeEEEeecCCCCCCCCCCCCC-----Ccc---ccCCccc----cccceeEEEEecC
Q 042146           21 GHLRAVSYVKFSHDGRLLTSSSAEKTLLTYSLSSISNFDSTPPSP-----LQK---FTGHEQG----ISDLATIRLWDVP   88 (262)
Q Consensus        21 ~h~~~v~~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~-----~~~---~~~~~~~----v~~~~~i~v~d~~   88 (262)
                      +..++-..+.|+|-...++++...-.|++||.+....+.......     +..   +......    ..+.+.|+||+-.
T Consensus      1062 ~n~~~pk~~~~hpf~p~i~~ad~r~~i~vwd~e~~~~l~~F~n~~~~~t~Vs~l~liNe~D~aLlLtas~dGvIRIwk~y 1141 (1387)
T KOG1517|consen 1062 GNNQPPKTLKFHPFEPQIAAADDRERIRVWDWEKGRLLNGFDNGAFPDTRVSDLELINEQDDALLLTASSDGVIRIWKDY 1141 (1387)
T ss_pred             cCCCCCceeeecCCCceeEEcCCcceEEEEecccCceeccccCCCCCCCccceeeeecccchhheeeeccCceEEEeccc
Confidence            334467788999999999999988899999988765543332211     111   1111111    1233489999753


Q ss_pred             CC-----ccceecc-------cCCcceEEEEEeCCCCEEEeecCCCeEEEEECCCCeeeeeeecC-CCCeeeEEEcc-CC
Q 042146           89 TA-----TSLKTLI-------GHTNYVFCINFNPQSNRIVSDTFNETIRIWDIKTGKCLKVLPAH-SDPVTAIDFNR-DG  154 (262)
Q Consensus        89 ~~-----~~~~~~~-------~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~-~~~v~~~~~~~-~~  154 (262)
                      ..     +.+..+.       +..+.-.-+.|.....+|++++.-..|+|||....+++..+... +..++++.-+. .|
T Consensus      1142 ~~~~~~~eLVTaw~~Ls~~~~~~r~~~~v~dWqQ~~G~Ll~tGd~r~IRIWDa~~E~~~~diP~~s~t~vTaLS~~~~~g 1221 (1387)
T KOG1517|consen 1142 ADKWKKPELVTAWSSLSDQLPGARGTGLVVDWQQQSGHLLVTGDVRSIRIWDAHKEQVVADIPYGSSTLVTALSADLVHG 1221 (1387)
T ss_pred             ccccCCceeEEeeccccccCccCCCCCeeeehhhhCCeEEecCCeeEEEEEecccceeEeecccCCCccceeecccccCC
Confidence            22     2222221       11122244567776666666666789999999988877776543 34667765544 57


Q ss_pred             CEEEEEeCCCeEEEEeCCC-------------------------CCc-cEEEEEcCCCeEEEEecCCCceeeEEeccCCc
Q 042146          155 TMIVTSSYDGLYRILDAST-------------------------PNG-KFILVGTLDNTLRLWNYSTRKILKTYSGYTNS  208 (262)
Q Consensus       155 ~~l~~~~~dg~i~~~d~~~-------------------------~~~-~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~  208 (262)
                      +.+++|..||.|++||.|.                         ++| ..|++|+.+|.|++||++.......+.-    
T Consensus      1222 n~i~AGfaDGsvRvyD~R~a~~ds~v~~~R~h~~~~~Iv~~slq~~G~~elvSgs~~G~I~~~DlR~~~~e~~~~i---- 1297 (1387)
T KOG1517|consen 1222 NIIAAGFADGSVRVYDRRMAPPDSLVCVYREHNDVEPIVHLSLQRQGLGELVSGSQDGDIQLLDLRMSSKETFLTI---- 1297 (1387)
T ss_pred             ceEEEeecCCceEEeecccCCccccceeecccCCcccceeEEeecCCCcceeeeccCCeEEEEecccCccccccee----
Confidence            9999999999999999987                         222 2599999999999999997522222211    


Q ss_pred             eeEEEEEEecCCCeeEEcc---ccceEEEEEcCCCCeEEEeeecCCCcEEEEeecc
Q 042146          209 KYCISSTFSVTNGKYIVSH---RDPVISVASHPAKNIIASGALDNDRTMKIWTQEK  261 (262)
Q Consensus       209 ~~~~~~~~~~~~~~~~~~~---~~~v~~~~~~p~~~~l~~~~~d~d~~i~iw~~~~  261 (262)
                                      ..|   .+..+++..|++.+.+|+|+  . +.|+||++..
T Consensus      1298 ----------------v~~~~yGs~lTal~VH~hapiiAsGs--~-q~ikIy~~~G 1334 (1387)
T KOG1517|consen 1298 ----------------VAHWEYGSALTALTVHEHAPIIASGS--A-QLIKIYSLSG 1334 (1387)
T ss_pred             ----------------eeccccCccceeeeeccCCCeeeecC--c-ceEEEEecCh
Confidence                            002   23589999999999999998  6 8999999864

>KOG1310 consensus WD40 repeat protein [General function prediction only]

Probab=99.67  E-value=5.7e-16  Score=120.84  Aligned_cols=154  Identities=18%  Similarity=0.371  Sum_probs=118.4

Q ss_pred             cceecccCCcceEEEEEeCCCCEEEeecCCCeEEEEECCCCeeeeee-ecCCCCeeeEEEcc--CCCEEEEEeCCCeEEE
Q 042146           92 SLKTLIGHTNYVFCINFNPQSNRIVSDTFNETIRIWDIKTGKCLKVL-PAHSDPVTAIDFNR--DGTMIVTSSYDGLYRI  168 (262)
Q Consensus        92 ~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~-~~~~~~v~~~~~~~--~~~~l~~~~~dg~i~~  168 (262)
                      ....+.+|.+-|+|++|+.+|.+|++|+.|-.+.|||.-..++++.+ .+|...|.++.|-|  +.+.+++|+.|..|++
T Consensus        42 lE~eL~GH~GCVN~LeWn~dG~lL~SGSDD~r~ivWd~~~~KllhsI~TgHtaNIFsvKFvP~tnnriv~sgAgDk~i~l  121 (758)
T KOG1310|consen   42 LEAELTGHTGCVNCLEWNADGELLASGSDDTRLIVWDPFEYKLLHSISTGHTANIFSVKFVPYTNNRIVLSGAGDKLIKL  121 (758)
T ss_pred             hhhhhccccceecceeecCCCCEEeecCCcceEEeecchhcceeeeeecccccceeEEeeeccCCCeEEEeccCcceEEE
Confidence            44567899999999999999999999999999999999888887776 57999999999999  5568999999999999


Q ss_pred             EeCCC------------------------------CCc-cEEEEEcCCCeEEEEecCCCceeeEEeccCCceeEEEEEEe
Q 042146          169 LDAST------------------------------PNG-KFILVGTLDNTLRLWNYSTRKILKTYSGYTNSKYCISSTFS  217 (262)
Q Consensus       169 ~d~~~------------------------------~~~-~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~  217 (262)
                      ||+..                              |++ +.+.++++||+|+-||++.......-..  -...+...   
T Consensus       122 fdl~~~~~~~~d~~~~~~~~~~~cht~rVKria~~p~~PhtfwsasEDGtirQyDiREph~c~p~~~--~~~~l~ny---  196 (758)
T KOG1310|consen  122 FDLDSSKEGGMDHGMEETTRCWSCHTDRVKRIATAPNGPHTFWSASEDGTIRQYDIREPHVCNPDED--CPSILVNY---  196 (758)
T ss_pred             EecccccccccccCccchhhhhhhhhhhhhheecCCCCCceEEEecCCcceeeecccCCccCCcccc--ccHHHHHh---
Confidence            99985                              455 7899999999999999986322111000  00000000   


Q ss_pred             cCCCeeEEccccceEEEEEcCCCC-eEEEeeecCCCcEEEEee
Q 042146          218 VTNGKYIVSHRDPVISVASHPAKN-IIASGALDNDRTMKIWTQ  259 (262)
Q Consensus       218 ~~~~~~~~~~~~~v~~~~~~p~~~-~l~~~~~d~d~~i~iw~~  259 (262)
                        .     ..--...++..+|... +|+.|+  .|--.++||.
T Consensus       197 --~-----~~lielk~ltisp~rp~~laVGg--sdpfarLYD~  230 (758)
T KOG1310|consen  197 --N-----PQLIELKCLTISPSRPYYLAVGG--SDPFARLYDR  230 (758)
T ss_pred             --c-----hhhheeeeeeecCCCCceEEecC--CCchhhhhhh
Confidence              0     0113467899999765 678888  7889999984

>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]

Probab=99.67  E-value=4e-15  Score=109.17  Aligned_cols=120  Identities=26%  Similarity=0.505  Sum_probs=103.2

Q ss_pred             CCcceEEEEEeC----CCCEEEeecCCCeEEEEECCCCeeeeeeecCCCCeeeEEEccCCCEEEEEeCCCeEEEEeCCCC
Q 042146           99 HTNYVFCINFNP----QSNRIVSDTFNETIRIWDIKTGKCLKVLPAHSDPVTAIDFNRDGTMIVTSSYDGLYRILDASTP  174 (262)
Q Consensus        99 ~~~~v~~~~~~~----~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~d~~~~  174 (262)
                      |......++|.-    ...++++|+.-|.|+|.|+.++++...+.+|...|+.+.++|+.                    
T Consensus        88 ~~Esfytcsw~yd~~~~~p~la~~G~~GvIrVid~~~~~~~~~~~ghG~sINeik~~p~~--------------------  147 (385)
T KOG1034|consen   88 HDESFYTCSWSYDSNTGNPFLAAGGYLGVIRVIDVVSGQCSKNYRGHGGSINEIKFHPDR--------------------  147 (385)
T ss_pred             CCcceEEEEEEecCCCCCeeEEeecceeEEEEEecchhhhccceeccCccchhhhcCCCC--------------------
Confidence            556677777764    25678899999999999999999999999999999999999954                    


Q ss_pred             CccEEEEEcCCCeEEEEecCCCceeeEEeccCCceeEEEEEEecCCCeeEEccccceEEEEEcCCCCeEEEeeecCCCcE
Q 042146          175 NGKFILVGTLDNTLRLWNYSTRKILKTYSGYTNSKYCISSTFSVTNGKYIVSHRDPVISVASHPAKNIIASGALDNDRTM  254 (262)
Q Consensus       175 ~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~d~d~~i  254 (262)
                       .+++++++.|..|++||+++..++..+.+.+.                   |.+.|.++.|++++.+++++|  -|.+|
T Consensus       148 -~qlvls~SkD~svRlwnI~~~~Cv~VfGG~eg-------------------HrdeVLSvD~~~~gd~i~ScG--mDhsl  205 (385)
T KOG1034|consen  148 -PQLVLSASKDHSVRLWNIQTDVCVAVFGGVEG-------------------HRDEVLSVDFSLDGDRIASCG--MDHSL  205 (385)
T ss_pred             -CcEEEEecCCceEEEEeccCCeEEEEeccccc-------------------ccCcEEEEEEcCCCCeeeccC--CcceE
Confidence             23456667778889999999999999887443                   999999999999999999999  78999


Q ss_pred             EEEeec
Q 042146          255 KIWTQE  260 (262)
Q Consensus       255 ~iw~~~  260 (262)
                      ++|+++
T Consensus       206 k~W~l~  211 (385)
T KOG1034|consen  206 KLWRLN  211 (385)
T ss_pred             EEEecC
Confidence            999997

>KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown]

Probab=99.66  E-value=1.8e-14  Score=106.47  Aligned_cols=168  Identities=20%  Similarity=0.319  Sum_probs=119.2

Q ss_pred             CCCCceeeecccccceec----ccCcCceEEEEEccCCCeEEEecCCCeEEEeecCCCCCCCCCCCCCCccccCCccccc
Q 042146            2 SSDRSLESFRPYTLTQTL----NGHLRAVSYVKFSHDGRLLTSSSAEKTLLTYSLSSISNFDSTPPSPLQKFTGHEQGIS   77 (262)
Q Consensus         2 s~d~~i~~~~~~~~~~~~----~~h~~~v~~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~   77 (262)
                      |.|++++.|......+..    ..-..+++++.+.++...|+.|-..|++.-+.+....+...    .......|...+.
T Consensus        43 s~drtvrv~lkrds~q~wpsI~~~mP~~~~~~~y~~e~~~L~vg~~ngtvtefs~sedfnkm~----~~r~~~~h~~~v~  118 (404)
T KOG1409|consen   43 SEDRTVRVWLKRDSGQYWPSIYHYMPSPCSAMEYVSESRRLYVGQDNGTVTEFALSEDFNKMT----FLKDYLAHQARVS  118 (404)
T ss_pred             cccceeeeEEeccccccCchhhhhCCCCceEeeeeccceEEEEEEecceEEEEEhhhhhhhcc----hhhhhhhhhccee
Confidence            568888888654433322    33578899999999999999999999999988754211110    0000001100000


Q ss_pred             cce------------------------------------------------------eEE--EEecCCCccceecccCCc
Q 042146           78 DLA------------------------------------------------------TIR--LWDVPTATSLKTLIGHTN  101 (262)
Q Consensus        78 ~~~------------------------------------------------------~i~--v~d~~~~~~~~~~~~~~~  101 (262)
                      .+.                                                      .|.  -.....-..+.++.+|.+
T Consensus       119 ~~if~~~~e~V~s~~~dk~~~~hc~e~~~~lg~Y~~~~~~t~~~~d~~~~fvGd~~gqvt~lr~~~~~~~~i~~~~~h~~  198 (404)
T KOG1409|consen  119 AIVFSLTHEWVLSTGKDKQFAWHCTESGNRLGGYNFETPASALQFDALYAFVGDHSGQITMLKLEQNGCQLITTFNGHTG  198 (404)
T ss_pred             eEEecCCceeEEEeccccceEEEeeccCCcccceEeeccCCCCceeeEEEEecccccceEEEEEeecCCceEEEEcCccc
Confidence            000                                                      111  111223455667889999


Q ss_pred             ceEEEEEeCCCCEEEeecCCCeEEEEECCCCe-eeeeeecCCCCeeeEEEccCCCEEEEEeCCCeEEEEeCCC
Q 042146          102 YVFCINFNPQSNRIVSDTFNETIRIWDIKTGK-CLKVLPAHSDPVTAIDFNRDGTMIVTSSYDGLYRILDAST  173 (262)
Q Consensus       102 ~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~-~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~d~~~  173 (262)
                      .+.+++|.|...++++|..|..+.+||+--++ ...++.+|...|..+...+.-+.+++++.||.|.+|++..
T Consensus       199 ~~~~l~Wd~~~~~LfSg~~d~~vi~wdigg~~g~~~el~gh~~kV~~l~~~~~t~~l~S~~edg~i~~w~mn~  271 (404)
T KOG1409|consen  199 EVTCLKWDPGQRLLFSGASDHSVIMWDIGGRKGTAYELQGHNDKVQALSYAQHTRQLISCGEDGGIVVWNMNV  271 (404)
T ss_pred             ceEEEEEcCCCcEEEeccccCceEEEeccCCcceeeeeccchhhhhhhhhhhhheeeeeccCCCeEEEEeccc
Confidence            99999999999999999999999999996443 3456778999999999999889999999999999999876

>KOG1963 consensus WD40 repeat protein [General function prediction only]

Probab=99.65  E-value=4.7e-14  Score=115.53  Aligned_cols=244  Identities=17%  Similarity=0.271  Sum_probs=167.2

Q ss_pred             Cceeeec--ccccceecccCcCceEEEEEccCC---CeEEEecCCCeEEEeecCCCCCCCCCCCC---------------
Q 042146            5 RSLESFR--PYTLTQTLNGHLRAVSYVKFSHDG---RLLTSSSAEKTLLTYSLSSISNFDSTPPS---------------   64 (262)
Q Consensus         5 ~~i~~~~--~~~~~~~~~~h~~~v~~~~~~~~~---~~l~s~~~d~~i~iw~~~~~~~~~~~~~~---------------   64 (262)
                      ..|.+|.  +...+..+++|..+++.+.+.|..   .++++++.||.|++||.............               
T Consensus        37 ~~V~VyS~~Tg~~i~~l~~~~a~l~s~~~~~~~~~~~~~~~~sl~G~I~vwd~~~~~Llkt~~~~~~v~~~~~~~~~a~~  116 (792)
T KOG1963|consen   37 NFVKVYSTATGECITSLEDHTAPLTSVIVLPSSENANYLIVCSLDGTIRVWDWSDGELLKTFDNNLPVHALVYKPAQADI  116 (792)
T ss_pred             CEEEEEecchHhhhhhcccccCccceeeecCCCccceEEEEEecCccEEEecCCCcEEEEEEecCCceeEEEechhHhCc
Confidence            3444554  556777899999999999998854   47889999999999997653221100000               


Q ss_pred             ------------CCccc------------------------cCC--cccc-----------ccceeEEEEecCCCccce-
Q 042146           65 ------------PLQKF------------------------TGH--EQGI-----------SDLATIRLWDVPTATSLK-   94 (262)
Q Consensus        65 ------------~~~~~------------------------~~~--~~~v-----------~~~~~i~v~d~~~~~~~~-   94 (262)
                                  ....+                        ..+  ...+           .-...+.+|+..++.... 
T Consensus       117 s~~~~~s~~~~~~~~~~s~~~~~q~~~~~~~t~~~~~~d~~~~~~~~~~I~~~~~ge~~~i~~~~~~~~~~v~~~~~~~~  196 (792)
T KOG1963|consen  117 SANVYVSVEDYSILTTFSKKLSKQSSRFVLATFDSAKGDFLKEHQEPKSIVDNNSGEFKGIVHMCKIHIYFVPKHTKHTS  196 (792)
T ss_pred             cceeEeecccceeeeecccccccceeeeEeeeccccchhhhhhhcCCccEEEcCCceEEEEEEeeeEEEEEecccceeec
Confidence                        00000                        000  0000           000067777776644111 


Q ss_pred             ---ecccCCcceEEEEEeCCCCEEEeecCCCeEEEEECCC--C--eeeeeeecCCCCeeeEEEccCCCEEEEEeCCCeEE
Q 042146           95 ---TLIGHTNYVFCINFNPQSNRIVSDTFNETIRIWDIKT--G--KCLKVLPAHSDPVTAIDFNRDGTMIVTSSYDGLYR  167 (262)
Q Consensus        95 ---~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~--~--~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~  167 (262)
                         .-..|.-.+++.+++|+++++++|..||.|.+|.--.  .  ...+.+.-|..+|++++|+++|.+|++|+.+|.+.
T Consensus       197 ~~~~~~~Htf~~t~~~~spn~~~~Aa~d~dGrI~vw~d~~~~~~~~t~t~lHWH~~~V~~L~fS~~G~~LlSGG~E~VLv  276 (792)
T KOG1963|consen  197 SRDITVHHTFNITCVALSPNERYLAAGDSDGRILVWRDFGSSDDSETCTLLHWHHDEVNSLSFSSDGAYLLSGGREGVLV  276 (792)
T ss_pred             cchhhhhhcccceeEEeccccceEEEeccCCcEEEEeccccccccccceEEEecccccceeEEecCCceEeecccceEEE
Confidence               1124666789999999999999999999999996322  1  22445666889999999999999999999999999


Q ss_pred             EEeCCC-------------------CCccEEEEEcCCCeEEEEecCCCceeeEEeccCCceeEEEEEEecCCCeeEEccc
Q 042146          168 ILDAST-------------------PNGKFILVGTLDNTLRLWNYSTRKILKTYSGYTNSKYCISSTFSVTNGKYIVSHR  228 (262)
Q Consensus       168 ~~d~~~-------------------~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  228 (262)
                      +|.+.+                   |++.+.+....|..|.+....+.....++.+........           -....
T Consensus       277 ~Wq~~T~~kqfLPRLgs~I~~i~vS~ds~~~sl~~~DNqI~li~~~dl~~k~tIsgi~~~~~~~-----------k~~~~  345 (792)
T KOG1963|consen  277 LWQLETGKKQFLPRLGSPILHIVVSPDSDLYSLVLEDNQIHLIKASDLEIKSTISGIKPPTPST-----------KTRPQ  345 (792)
T ss_pred             EEeecCCCcccccccCCeeEEEEEcCCCCeEEEEecCceEEEEeccchhhhhhccCccCCCccc-----------ccccc
Confidence            999877                   889999999999999999887766666665533221110           00034


Q ss_pred             cceEEEEEcCCCCeEEEeeecCCCcEEEEeecc
Q 042146          229 DPVISVASHPAKNIIASGALDNDRTMKIWTQEK  261 (262)
Q Consensus       229 ~~v~~~~~~p~~~~l~~~~~d~d~~i~iw~~~~  261 (262)
                      +-.+.++++|.-+.++-.+  ..|.|.+||+-+
T Consensus       346 ~l~t~~~idpr~~~~vln~--~~g~vQ~ydl~t  376 (792)
T KOG1963|consen  346 SLTTGVSIDPRTNSLVLNG--HPGHVQFYDLYT  376 (792)
T ss_pred             ccceeEEEcCCCCceeecC--CCceEEEEeccc
Confidence            4567888899666666666  789999998754

>KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=99.65  E-value=5.4e-16  Score=118.47  Aligned_cols=174  Identities=23%  Similarity=0.341  Sum_probs=145.8

Q ss_pred             ceEEEEEccCCCeEEEecCCCeEEEeecCCCCCCCCCCCCCCccccCCccccccceeEEEEecCCCccceecccCCcceE
Q 042146           25 AVSYVKFSHDGRLLTSSSAEKTLLTYSLSSISNFDSTPPSPLQKFTGHEQGISDLATIRLWDVPTATSLKTLIGHTNYVF  104 (262)
Q Consensus        25 ~v~~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~i~v~d~~~~~~~~~~~~~~~~v~  104 (262)
                      .-..+.++.+|++|+.|+.-|.|-.+                                   |..+++....+. -...|.
T Consensus       131 GPY~~~ytrnGrhlllgGrKGHlAa~-----------------------------------Dw~t~~L~~Ei~-v~Etv~  174 (545)
T KOG1272|consen  131 GPYHLDYTRNGRHLLLGGRKGHLAAF-----------------------------------DWVTKKLHFEIN-VMETVR  174 (545)
T ss_pred             CCeeeeecCCccEEEecCCccceeee-----------------------------------ecccceeeeeee-hhhhhh
Confidence            34578899999999999999987666                                   445555555543 346688


Q ss_pred             EEEEeCCCCEEEeecCCCeEEEEECCCCeeeeeeecCCCCeeeEEEccCCCEEEEEeCCCeEEEEeCCC-----------
Q 042146          105 CINFNPQSNRIVSDTFNETIRIWDIKTGKCLKVLPAHSDPVTAIDFNRDGTMIVTSSYDGLYRILDAST-----------  173 (262)
Q Consensus       105 ~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~d~~~-----------  173 (262)
                      .+.|..+.+++|++- ...++||| +.|..++.++.| ..|..+.|-|..-+|++++..|.++.-|+..           
T Consensus       175 Dv~~LHneq~~AVAQ-K~y~yvYD-~~GtElHClk~~-~~v~rLeFLPyHfLL~~~~~~G~L~Y~DVS~GklVa~~~t~~  251 (545)
T KOG1272|consen  175 DVTFLHNEQFFAVAQ-KKYVYVYD-NNGTELHCLKRH-IRVARLEFLPYHFLLVAASEAGFLKYQDVSTGKLVASIRTGA  251 (545)
T ss_pred             hhhhhcchHHHHhhh-hceEEEec-CCCcEEeehhhc-CchhhhcccchhheeeecccCCceEEEeechhhhhHHHHccC
Confidence            889988888887775 56899999 668888888764 5689999999999999999999999999876           


Q ss_pred             ---------CCccEEEEEcCCCeEEEEecCCCceeeEEeccCCceeEEEEEEecCCCeeEEccccceEEEEEcCCCCeEE
Q 042146          174 ---------PNGKFILVGTLDNTLRLWNYSTRKILKTYSGYTNSKYCISSTFSVTNGKYIVSHRDPVISVASHPAKNIIA  244 (262)
Q Consensus       174 ---------~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~  244 (262)
                               |-+..+-+|...|+|.+|.....+++..+..                      |.++|.++++.|+|.++|
T Consensus       252 G~~~vm~qNP~NaVih~GhsnGtVSlWSP~skePLvKiLc----------------------H~g~V~siAv~~~G~YMa  309 (545)
T KOG1272|consen  252 GRTDVMKQNPYNAVIHLGHSNGTVSLWSPNSKEPLVKILC----------------------HRGPVSSIAVDRGGRYMA  309 (545)
T ss_pred             CccchhhcCCccceEEEcCCCceEEecCCCCcchHHHHHh----------------------cCCCcceEEECCCCcEEe
Confidence                     6677888999999999999998888776655                      999999999999999999


Q ss_pred             EeeecCCCcEEEEeecc
Q 042146          245 SGALDNDRTMKIWTQEK  261 (262)
Q Consensus       245 ~~~~d~d~~i~iw~~~~  261 (262)
                      |+|  -|..++|||+.+
T Consensus       310 TtG--~Dr~~kIWDlR~  324 (545)
T KOG1272|consen  310 TTG--LDRKVKIWDLRN  324 (545)
T ss_pred             ecc--cccceeEeeecc
Confidence            999  889999999864

>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only]

Probab=99.64  E-value=1.7e-15  Score=117.72  Aligned_cols=104  Identities=16%  Similarity=0.318  Sum_probs=88.4

Q ss_pred             ccceecccCcCceEEEEEccCCCeEEEecCCCeEEEeecCCCCCCCCCCCCCCccccCCccccccceeEEEEecCCCccc
Q 042146           14 TLTQTLNGHLRAVSYVKFSHDGRLLTSSSAEKTLLTYSLSSISNFDSTPPSPLQKFTGHEQGISDLATIRLWDVPTATSL   93 (262)
Q Consensus        14 ~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~i~v~d~~~~~~~   93 (262)
                      .++..+.--++.|+.++|+|||++||+.+.||.+||+|+.                                   +.+.+
T Consensus       281 NPv~~w~~~~g~in~f~FS~DG~~LA~VSqDGfLRvF~fd-----------------------------------t~eLl  325 (636)
T KOG2394|consen  281 NPVARWHIGEGSINEFAFSPDGKYLATVSQDGFLRIFDFD-----------------------------------TQELL  325 (636)
T ss_pred             CccceeEeccccccceeEcCCCceEEEEecCceEEEeecc-----------------------------------HHHHH
Confidence            3455555556789999999999999999999999988653                                   33444


Q ss_pred             eecccCCcceEEEEEeCCCCEEEeecCCCeEEEEECCCCeeeeeeecCCCCeeeEEEcc
Q 042146           94 KTLIGHTNYVFCINFNPQSNRIVSDTFNETIRIWDIKTGKCLKVLPAHSDPVTAIDFNR  152 (262)
Q Consensus        94 ~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~  152 (262)
                      ..++.--+...|++|+|||+++++|++|..|.||.+..++.+..-.+|++.|..++|.|
T Consensus       326 g~mkSYFGGLLCvcWSPDGKyIvtGGEDDLVtVwSf~erRVVARGqGHkSWVs~VaFDp  384 (636)
T KOG2394|consen  326 GVMKSYFGGLLCVCWSPDGKYIVTGGEDDLVTVWSFEERRVVARGQGHKSWVSVVAFDP  384 (636)
T ss_pred             HHHHhhccceEEEEEcCCccEEEecCCcceEEEEEeccceEEEeccccccceeeEeecc
Confidence            44444457799999999999999999999999999999999999999999999999996

>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]

Probab=99.64  E-value=3.2e-15  Score=117.68  Aligned_cols=174  Identities=17%  Similarity=0.364  Sum_probs=138.4

Q ss_pred             ecccCcCceEEEEEccCCCeEEEecCC---CeEEEeecCCCCCCCCCC--CCCCccccCCc----cccccceeEEEEecC
Q 042146           18 TLNGHLRAVSYVKFSHDGRLLTSSSAE---KTLLTYSLSSISNFDSTP--PSPLQKFTGHE----QGISDLATIRLWDVP   88 (262)
Q Consensus        18 ~~~~h~~~v~~~~~~~~~~~l~s~~~d---~~i~iw~~~~~~~~~~~~--~~~~~~~~~~~----~~v~~~~~i~v~d~~   88 (262)
                      ..-.|.++|+.+.|+..|.||++...+   ..|.|+++..........  .........|.    ..|.....|++||+.
T Consensus       516 ~~I~~~k~i~~vtWHrkGDYlatV~~~~~~~~VliHQLSK~~sQ~PF~kskG~vq~v~FHPs~p~lfVaTq~~vRiYdL~  595 (733)
T KOG0650|consen  516 IVIKHPKSIRQVTWHRKGDYLATVMPDSGNKSVLIHQLSKRKSQSPFRKSKGLVQRVKFHPSKPYLFVATQRSVRIYDLS  595 (733)
T ss_pred             EEEecCCccceeeeecCCceEEEeccCCCcceEEEEecccccccCchhhcCCceeEEEecCCCceEEEEeccceEEEehh
Confidence            334689999999999999999997654   578999887643322111  11111112222    223344489999999


Q ss_pred             CCccceecccCCcceEEEEEeCCCCEEEeecCCCeEEEEECCC-CeeeeeeecCCCCeeeEEEccCCCEEEEEeCCCeEE
Q 042146           89 TATSLKTLIGHTNYVFCINFNPQSNRIVSDTFNETIRIWDIKT-GKCLKVLPAHSDPVTAIDFNRDGTMIVTSSYDGLYR  167 (262)
Q Consensus        89 ~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~-~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~  167 (262)
                      ....++.+......|..++++|.|.-|+.|+.|+.+..+|+.- .++.+.+..|...+++++|++.-.+|++|+.||++.
T Consensus       596 kqelvKkL~tg~kwiS~msihp~GDnli~gs~d~k~~WfDldlsskPyk~lr~H~~avr~Va~H~ryPLfas~sdDgtv~  675 (733)
T KOG0650|consen  596 KQELVKKLLTGSKWISSMSIHPNGDNLILGSYDKKMCWFDLDLSSKPYKTLRLHEKAVRSVAFHKRYPLFASGSDDGTVI  675 (733)
T ss_pred             HHHHHHHHhcCCeeeeeeeecCCCCeEEEecCCCeeEEEEcccCcchhHHhhhhhhhhhhhhhccccceeeeecCCCcEE
Confidence            9888888888888999999999999999999999999999974 467778889999999999999999999999999999


Q ss_pred             EEeCCC---------------------------------CCccEEEEEcCCCeEEEE
Q 042146          168 ILDAST---------------------------------PNGKFILVGTLDNTLRLW  191 (262)
Q Consensus       168 ~~d~~~---------------------------------~~~~~l~~~~~dg~i~i~  191 (262)
                      +|.-..                                 |...+|++++.||+|++|
T Consensus       676 Vfhg~VY~Dl~qnpliVPlK~L~gH~~~~~~gVLd~~wHP~qpWLfsAGAd~tirlf  732 (733)
T KOG0650|consen  676 VFHGMVYNDLLQNPLIVPLKRLRGHEKTNDLGVLDTIWHPRQPWLFSAGADGTIRLF  732 (733)
T ss_pred             EEeeeeehhhhcCCceEeeeeccCceeecccceEeecccCCCceEEecCCCceEEee
Confidence            986433                                 778899999999999998

>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]

Probab=99.64  E-value=2.3e-14  Score=105.08  Aligned_cols=179  Identities=17%  Similarity=0.287  Sum_probs=121.1

Q ss_pred             CCCCceeeecc--cccceeccc--CcC---ceEEEEEccCCCeEEEecCCCeEEEeecCC-CCCCCCC---------CCC
Q 042146            2 SSDRSLESFRP--YTLTQTLNG--HLR---AVSYVKFSHDGRLLTSSSAEKTLLTYSLSS-ISNFDST---------PPS   64 (262)
Q Consensus         2 s~d~~i~~~~~--~~~~~~~~~--h~~---~v~~~~~~~~~~~l~s~~~d~~i~iw~~~~-~~~~~~~---------~~~   64 (262)
                      |+|+.|..|+.  .++...+++  |..   +-.+++|+|||.+|++|- .+.|+++|+.. .......         ...
T Consensus       130 sr~~PIh~wdaftG~lraSy~~ydh~de~taAhsL~Fs~DGeqlfaGy-krcirvFdt~RpGr~c~vy~t~~~~k~gq~g  208 (406)
T KOG2919|consen  130 SRDQPIHLWDAFTGKLRASYRAYDHQDEYTAAHSLQFSPDGEQLFAGY-KRCIRVFDTSRPGRDCPVYTTVTKGKFGQKG  208 (406)
T ss_pred             cccCceeeeeccccccccchhhhhhHHhhhhheeEEecCCCCeEeecc-cceEEEeeccCCCCCCcchhhhhcccccccc
Confidence            45666777763  334444443  322   346899999999998865 58999999843 2211110         011


Q ss_pred             CCcccc--CCccccccce----eEEEEecCCCccceecccCCcceEEEEEeCCCCEEEeecC-CCeEEEEECCC-Ceeee
Q 042146           65 PLQKFT--GHEQGISDLA----TIRLWDVPTATSLKTLIGHTNYVFCINFNPQSNRIVSDTF-NETIRIWDIKT-GKCLK  136 (262)
Q Consensus        65 ~~~~~~--~~~~~v~~~~----~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-dg~i~vwd~~~-~~~~~  136 (262)
                      .+..+.  .+......++    .+-++.-..+.++..+-+|.+.|+.++|.++|+.|++|+. |-.|..||++. ..++.
T Consensus       209 iisc~a~sP~~~~~~a~gsY~q~~giy~~~~~~pl~llggh~gGvThL~~~edGn~lfsGaRk~dkIl~WDiR~~~~pv~  288 (406)
T KOG2919|consen  209 IISCFAFSPMDSKTLAVGSYGQRVGIYNDDGRRPLQLLGGHGGGVTHLQWCEDGNKLFSGARKDDKILCWDIRYSRDPVY  288 (406)
T ss_pred             eeeeeeccCCCCcceeeecccceeeeEecCCCCceeeecccCCCeeeEEeccCcCeecccccCCCeEEEEeehhccchhh
Confidence            111222  2222222222    6677777788899999999999999999999999999885 66899999985 45677


Q ss_pred             eeecCCC-Ceee--EEEccCCCEEEEEeCCCeEEEEeCCCCCccEEEE
Q 042146          137 VLPAHSD-PVTA--IDFNRDGTMIVTSSYDGLYRILDASTPNGKFILV  181 (262)
Q Consensus       137 ~~~~~~~-~v~~--~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~l~~  181 (262)
                      .+..|.+ .-..  ....|.+++|++|+.||.|++||+..+.....+.
T Consensus       289 ~L~rhv~~TNQRI~FDld~~~~~LasG~tdG~V~vwdlk~~gn~~sv~  336 (406)
T KOG2919|consen  289 ALERHVGDTNQRILFDLDPKGEILASGDTDGSVRVWDLKDLGNEVSVT  336 (406)
T ss_pred             hhhhhccCccceEEEecCCCCceeeccCCCccEEEEecCCCCCccccc
Confidence            7776655 2223  4456899999999999999999999844433333

>KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=99.64  E-value=1.7e-15  Score=115.80  Aligned_cols=217  Identities=18%  Similarity=0.245  Sum_probs=154.0

Q ss_pred             eecccccceecccCcCceEEEEEccCCCeEEEecCCCeEEEeecCCCCCCCCCCCCCC---ccccCCcc--ccccceeEE
Q 042146            9 SFRPYTLTQTLNGHLRAVSYVKFSHDGRLLTSSSAEKTLLTYSLSSISNFDSTPPSPL---QKFTGHEQ--GISDLATIR   83 (262)
Q Consensus         9 ~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~---~~~~~~~~--~v~~~~~i~   83 (262)
                      +|.+.++...+.. ...|.++.|-.+..+||++. .+.+.|||-..............   ..++.|-.  .....+.++
T Consensus       157 Dw~t~~L~~Ei~v-~Etv~Dv~~LHneq~~AVAQ-K~y~yvYD~~GtElHClk~~~~v~rLeFLPyHfLL~~~~~~G~L~  234 (545)
T KOG1272|consen  157 DWVTKKLHFEINV-METVRDVTFLHNEQFFAVAQ-KKYVYVYDNNGTELHCLKRHIRVARLEFLPYHFLLVAASEAGFLK  234 (545)
T ss_pred             ecccceeeeeeeh-hhhhhhhhhhcchHHHHhhh-hceEEEecCCCcEEeehhhcCchhhhcccchhheeeecccCCceE
Confidence            4557777666654 46688888888888777766 47888888765433222221111   12222221  122233677


Q ss_pred             EEecCCCccceecccCCcceEEEEEeCCCCEEEeecCCCeEEEEECCCCeeeeeeecCCCCeeeEEEccCCCEEEEEeCC
Q 042146           84 LWDVPTATSLKTLIGHTNYVFCINFNPQSNRIVSDTFNETIRIWDIKTGKCLKVLPAHSDPVTAIDFNRDGTMIVTSSYD  163 (262)
Q Consensus        84 v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d  163 (262)
                      .-|+.+|+.+..+....+.+..|+-+|-...+-.|...|+|.+|...+.+++..+..|.++|.++++.++|+++++++.|
T Consensus       235 Y~DVS~GklVa~~~t~~G~~~vm~qNP~NaVih~GhsnGtVSlWSP~skePLvKiLcH~g~V~siAv~~~G~YMaTtG~D  314 (545)
T KOG1272|consen  235 YQDVSTGKLVASIRTGAGRTDVMKQNPYNAVIHLGHSNGTVSLWSPNSKEPLVKILCHRGPVSSIAVDRGGRYMATTGLD  314 (545)
T ss_pred             EEeechhhhhHHHHccCCccchhhcCCccceEEEcCCCceEEecCCCCcchHHHHHhcCCCcceEEECCCCcEEeecccc
Confidence            78999999999998888999999999999999999999999999999999998888999999999999999999999999


Q ss_pred             CeEEEEeCCC-----------------CCccEEEEEcCCCeEEEEe-cCCCc--eeeEEeccCCceeEEEEEEecCCCee
Q 042146          164 GLYRILDAST-----------------PNGKFILVGTLDNTLRLWN-YSTRK--ILKTYSGYTNSKYCISSTFSVTNGKY  223 (262)
Q Consensus       164 g~i~~~d~~~-----------------~~~~~l~~~~~dg~i~i~d-~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~  223 (262)
                      ..++|||+|.                 -..+-+++.+....+.||. .-.+.  ....+..|.                 
T Consensus       315 r~~kIWDlR~~~ql~t~~tp~~a~~ls~SqkglLA~~~G~~v~iw~d~~~~s~~~~~pYm~H~-----------------  377 (545)
T KOG1272|consen  315 RKVKIWDLRNFYQLHTYRTPHPASNLSLSQKGLLALSYGDHVQIWKDALKGSGHGETPYMNHR-----------------  377 (545)
T ss_pred             cceeEeeeccccccceeecCCCccccccccccceeeecCCeeeeehhhhcCCCCCCcchhhhc-----------------
Confidence            9999999997                 1233344445555788884 22211  111222211                 


Q ss_pred             EEccccceEEEEEcCCCCeEEEee
Q 042146          224 IVSHRDPVISVASHPAKNIIASGA  247 (262)
Q Consensus       224 ~~~~~~~v~~~~~~p~~~~l~~~~  247 (262)
                         ..++|..+.|.|-...|-.|.
T Consensus       378 ---~~~~V~~l~FcP~EDvLGIGH  398 (545)
T KOG1272|consen  378 ---CGGPVEDLRFCPYEDVLGIGH  398 (545)
T ss_pred             ---cCcccccceeccHHHeeeccc
Confidence               345788888888766665554

>KOG2139 consensus WD40 repeat protein [General function prediction only]

Probab=99.63  E-value=7.1e-14  Score=104.04  Aligned_cols=150  Identities=18%  Similarity=0.348  Sum_probs=107.3

Q ss_pred             cCceEEEEEccCCCeEEEecCCCeEEEeecCCCCC--CCCCCCCCCcc-----ccCCccccccceeEEEEecCCC----c
Q 042146           23 LRAVSYVKFSHDGRLLTSSSAEKTLLTYSLSSISN--FDSTPPSPLQK-----FTGHEQGISDLATIRLWDVPTA----T   91 (262)
Q Consensus        23 ~~~v~~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~--~~~~~~~~~~~-----~~~~~~~v~~~~~i~v~d~~~~----~   91 (262)
                      +-.+..++|++.-..||++..|-.|++|+-.....  ......+.+..     +.+....|.+-+-|.+|.....    .
T Consensus        98 ~~dlr~~aWhqH~~~fava~nddvVriy~ksst~pt~Lks~sQrnvtclawRPlsaselavgCr~gIciW~~s~tln~~r  177 (445)
T KOG2139|consen   98 EIDLRGVAWHQHIIAFAVATNDDVVRIYDKSSTCPTKLKSVSQRNVTCLAWRPLSASELAVGCRAGICIWSDSRTLNANR  177 (445)
T ss_pred             hcceeeEeechhhhhhhhhccCcEEEEeccCCCCCceecchhhcceeEEEeccCCcceeeeeecceeEEEEcCccccccc
Confidence            45688899999877899999999999998654211  11111122222     2223334445558999976431    1


Q ss_pred             c----------ceecccCCcceEEEEEeCCCCEEEeecC-CCeEEEEECCCCeeeeeeecCCCCeeeEEEccCCCEEEEE
Q 042146           92 S----------LKTLIGHTNYVFCINFNPQSNRIVSDTF-NETIRIWDIKTGKCLKVLPAHSDPVTAIDFNRDGTMIVTS  160 (262)
Q Consensus        92 ~----------~~~~~~~~~~v~~~~~~~~~~~l~~~~~-dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~  160 (262)
                      .          +...++| .+|++|+|++||..+++++. |..|.|||+.++..+.......+.++-+.||||+.+|+++
T Consensus       178 ~~~~~s~~~~qvl~~pgh-~pVtsmqwn~dgt~l~tAS~gsssi~iWdpdtg~~~pL~~~glgg~slLkwSPdgd~lfaA  256 (445)
T KOG2139|consen  178 NIRMMSTHHLQVLQDPGH-NPVTSMQWNEDGTILVTASFGSSSIMIWDPDTGQKIPLIPKGLGGFSLLKWSPDGDVLFAA  256 (445)
T ss_pred             ccccccccchhheeCCCC-ceeeEEEEcCCCCEEeecccCcceEEEEcCCCCCcccccccCCCceeeEEEcCCCCEEEEe
Confidence            1          1122344 68999999999999998875 5689999999998776665556788999999999999999


Q ss_pred             eCCCeEEEEeCCC
Q 042146          161 SYDGLYRILDAST  173 (262)
Q Consensus       161 ~~dg~i~~~d~~~  173 (262)
                      .-|+..++|....
T Consensus       257 t~davfrlw~e~q  269 (445)
T KOG2139|consen  257 TCDAVFRLWQENQ  269 (445)
T ss_pred             cccceeeeehhcc
Confidence            9999999995443

>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]

Probab=99.62  E-value=1.4e-12  Score=95.55  Aligned_cols=165  Identities=16%  Similarity=0.271  Sum_probs=117.7

Q ss_pred             Cceeeecccc--cceecccCcCceEEEEEccCCCeEEEecCCCeEEEeecCC-CCCC---CCCC-CCCCccccCCccc--
Q 042146            5 RSLESFRPYT--LTQTLNGHLRAVSYVKFSHDGRLLTSSSAEKTLLTYSLSS-ISNF---DSTP-PSPLQKFTGHEQG--   75 (262)
Q Consensus         5 ~~i~~~~~~~--~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~iw~~~~-~~~~---~~~~-~~~~~~~~~~~~~--   75 (262)
                      +.+-+|+..+  ++.++. ...+|.++.+.++  .+++.- .+.|.+|.... .+..   +... +.-+..+..+...  
T Consensus        75 NkviIWDD~k~~~i~el~-f~~~I~~V~l~r~--riVvvl-~~~I~VytF~~n~k~l~~~et~~NPkGlC~~~~~~~k~~  150 (346)
T KOG2111|consen   75 NKVIIWDDLKERCIIELS-FNSEIKAVKLRRD--RIVVVL-ENKIYVYTFPDNPKLLHVIETRSNPKGLCSLCPTSNKSL  150 (346)
T ss_pred             ceEEEEecccCcEEEEEE-eccceeeEEEcCC--eEEEEe-cCeEEEEEcCCChhheeeeecccCCCceEeecCCCCceE
Confidence            4455666443  444443 5788999999776  354443 57999998863 2111   1111 1112222111110  


Q ss_pred             ----cccceeEEEEecCCCcc--ceecccCCcceEEEEEeCCCCEEEeecCCCe-EEEEECCCCeeeeeeecC--CCCee
Q 042146           76 ----ISDLATIRLWDVPTATS--LKTLIGHTNYVFCINFNPQSNRIVSDTFNET-IRIWDIKTGKCLKVLPAH--SDPVT  146 (262)
Q Consensus        76 ----v~~~~~i~v~d~~~~~~--~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~-i~vwd~~~~~~~~~~~~~--~~~v~  146 (262)
                          -...+.|++-|+...+.  ...+.+|...|.|++.+.+|.++|++|..|+ |+|||.+++.++.+++..  ...|.
T Consensus       151 LafPg~k~GqvQi~dL~~~~~~~p~~I~AH~s~Iacv~Ln~~Gt~vATaStkGTLIRIFdt~~g~~l~E~RRG~d~A~iy  230 (346)
T KOG2111|consen  151 LAFPGFKTGQVQIVDLASTKPNAPSIINAHDSDIACVALNLQGTLVATASTKGTLIRIFDTEDGTLLQELRRGVDRADIY  230 (346)
T ss_pred             EEcCCCccceEEEEEhhhcCcCCceEEEcccCceeEEEEcCCccEEEEeccCcEEEEEEEcCCCcEeeeeecCCchheEE
Confidence                01113788999876554  4778899999999999999999999999996 889999999999998653  34799


Q ss_pred             eEEEccCCCEEEEEeCCCeEEEEeCCC
Q 042146          147 AIDFNRDGTMIVTSSYDGLYRILDAST  173 (262)
Q Consensus       147 ~~~~~~~~~~l~~~~~dg~i~~~d~~~  173 (262)
                      +|+|||++.+|+++|.-|++.+|.++.
T Consensus       231 ~iaFSp~~s~LavsSdKgTlHiF~l~~  257 (346)
T KOG2111|consen  231 CIAFSPNSSWLAVSSDKGTLHIFSLRD  257 (346)
T ss_pred             EEEeCCCccEEEEEcCCCeEEEEEeec
Confidence            999999999999999999999999886

>KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only]

Probab=99.62  E-value=1.9e-15  Score=107.75  Aligned_cols=128  Identities=20%  Similarity=0.260  Sum_probs=104.4

Q ss_pred             cccceecccCcCceEEEEEccCCCeEEEecCCCeEEEeecCCCCCCCCCCCCCCccccCCccccccceeEEEEecCCCcc
Q 042146           13 YTLTQTLNGHLRAVSYVKFSHDGRLLTSSSAEKTLLTYSLSSISNFDSTPPSPLQKFTGHEQGISDLATIRLWDVPTATS   92 (262)
Q Consensus        13 ~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~i~v~d~~~~~~   92 (262)
                      .+.......|.++|.++.|.+....=++|+.+..+..|+++.                               +...-+.
T Consensus       195 ~kv~~~~ash~qpvlsldyas~~~rGisgga~dkl~~~Sl~~-------------------------------s~gslq~  243 (323)
T KOG0322|consen  195 SKVESPNASHKQPVLSLDYASSCDRGISGGADDKLVMYSLNH-------------------------------STGSLQI  243 (323)
T ss_pred             cccccchhhccCcceeeeechhhcCCcCCCccccceeeeecc-------------------------------ccCcccc
Confidence            355566678999999999998777778888888888887643                               1111111


Q ss_pred             ceecccCCcceEEEEEeCCCCEEEeecCCCeEEEEECCCCeeeeeeecCCCCeeeEEEccCCCEEEEEeCCCeEEEEeC
Q 042146           93 LKTLIGHTNYVFCINFNPQSNRIVSDTFNETIRIWDIKTGKCLKVLPAHSDPVTAIDFNRDGTMIVTSSYDGLYRILDA  171 (262)
Q Consensus        93 ~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~d~  171 (262)
                      -.+..-....|..+.+-||++.+|+++.|+.|+||..++.+++..++.|++.|++++|+|+...+++++.|++|.+|++
T Consensus       244 ~~e~~lknpGv~gvrIRpD~KIlATAGWD~RiRVyswrtl~pLAVLkyHsagvn~vAfspd~~lmAaaskD~rISLWkL  322 (323)
T KOG0322|consen  244 RKEITLKNPGVSGVRIRPDGKILATAGWDHRIRVYSWRTLNPLAVLKYHSAGVNAVAFSPDCELMAAASKDARISLWKL  322 (323)
T ss_pred             cceEEecCCCccceEEccCCcEEeecccCCcEEEEEeccCCchhhhhhhhcceeEEEeCCCCchhhhccCCceEEeeec
Confidence            1122222345888999999999999999999999999999999999999999999999999999999999999999986

>PRK03629 tolB translocation protein TolB; Provisional

Probab=99.62  E-value=6.4e-13  Score=107.39  Aligned_cols=192  Identities=10%  Similarity=0.139  Sum_probs=120.9

Q ss_pred             ceeeec-ccccceecccCcCceEEEEEccCCCeEEEecC---CCeEEEeecCCCCCCCCCCCCCCccccCCcccccccee
Q 042146            6 SLESFR-PYTLTQTLNGHLRAVSYVKFSHDGRLLTSSSA---EKTLLTYSLSSISNFDSTPPSPLQKFTGHEQGISDLAT   81 (262)
Q Consensus         6 ~i~~~~-~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~---d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~   81 (262)
                      .|+.++ .....+.+..+...+.+.+|+|||+.|+..+.   +..|.                                 
T Consensus       180 ~l~~~d~dg~~~~~lt~~~~~~~~p~wSPDG~~la~~s~~~g~~~i~---------------------------------  226 (429)
T PRK03629        180 ELRVSDYDGYNQFVVHRSPQPLMSPAWSPDGSKLAYVTFESGRSALV---------------------------------  226 (429)
T ss_pred             eEEEEcCCCCCCEEeecCCCceeeeEEcCCCCEEEEEEecCCCcEEE---------------------------------
Confidence            355554 22233445556778999999999999887542   22344                                 


Q ss_pred             EEEEecCCCccceecccCCcceEEEEEeCCCCEEEee-cCCC--eEEEEECCCCeeeeeeecCCCCeeeEEEccCCCEEE
Q 042146           82 IRLWDVPTATSLKTLIGHTNYVFCINFNPQSNRIVSD-TFNE--TIRIWDIKTGKCLKVLPAHSDPVTAIDFNRDGTMIV  158 (262)
Q Consensus        82 i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~~dg--~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~  158 (262)
                        +|++.+++... +......+...+|+|||+.|+.. +.+|  .|.+||+.+++... +..+...+....|+|+|+.|+
T Consensus       227 --i~dl~~G~~~~-l~~~~~~~~~~~~SPDG~~La~~~~~~g~~~I~~~d~~tg~~~~-lt~~~~~~~~~~wSPDG~~I~  302 (429)
T PRK03629        227 --IQTLANGAVRQ-VASFPRHNGAPAFSPDGSKLAFALSKTGSLNLYVMDLASGQIRQ-VTDGRSNNTEPTWFPDSQNLA  302 (429)
T ss_pred             --EEECCCCCeEE-ccCCCCCcCCeEECCCCCEEEEEEcCCCCcEEEEEECCCCCEEE-ccCCCCCcCceEECCCCCEEE
Confidence              44554443221 11122334468999999988754 4444  59999998876544 334455678899999999887


Q ss_pred             EEeCC-CeEEEE--eCCC-------------------CCccEEEEEcCC---CeEEEEecCCCceeeEEeccCCceeEEE
Q 042146          159 TSSYD-GLYRIL--DAST-------------------PNGKFILVGTLD---NTLRLWNYSTRKILKTYSGYTNSKYCIS  213 (262)
Q Consensus       159 ~~~~d-g~i~~~--d~~~-------------------~~~~~l~~~~~d---g~i~i~d~~~~~~~~~~~~~~~~~~~~~  213 (262)
                      ..+.+ +...+|  |+..                   |++++++..+.+   ..|.+||+.+++.. .+..         
T Consensus       303 f~s~~~g~~~Iy~~d~~~g~~~~lt~~~~~~~~~~~SpDG~~Ia~~~~~~g~~~I~~~dl~~g~~~-~Lt~---------  372 (429)
T PRK03629        303 YTSDQAGRPQVYKVNINGGAPQRITWEGSQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATGGVQ-VLTD---------  372 (429)
T ss_pred             EEeCCCCCceEEEEECCCCCeEEeecCCCCccCEEECCCCCEEEEEEccCCCceEEEEECCCCCeE-EeCC---------
Confidence            76653 444444  5443                   678877765433   35778888776543 2221         


Q ss_pred             EEEecCCCeeEEccccceEEEEEcCCCCeEEEeeecCCCc---EEEEeec
Q 042146          214 STFSVTNGKYIVSHRDPVISVASHPAKNIIASGALDNDRT---MKIWTQE  260 (262)
Q Consensus       214 ~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~d~d~~---i~iw~~~  260 (262)
                                    ........|+|||+.|+.++  .++.   +.+++++
T Consensus       373 --------------~~~~~~p~~SpDG~~i~~~s--~~~~~~~l~~~~~~  406 (429)
T PRK03629        373 --------------TFLDETPSIAPNGTMVIYSS--SQGMGSVLNLVSTD  406 (429)
T ss_pred             --------------CCCCCCceECCCCCEEEEEE--cCCCceEEEEEECC
Confidence                          01123578999999999988  5553   5666654

>PRK04922 tolB translocation protein TolB; Provisional

Probab=99.61  E-value=3.6e-13  Score=109.17  Aligned_cols=194  Identities=18%  Similarity=0.173  Sum_probs=123.7

Q ss_pred             ceeeecc-cccceecccCcCceEEEEEccCCCeEEEecCCC---eEEEeecCCCCCCCCCCCCCCccccCCcccccccee
Q 042146            6 SLESFRP-YTLTQTLNGHLRAVSYVKFSHDGRLLTSSSAEK---TLLTYSLSSISNFDSTPPSPLQKFTGHEQGISDLAT   81 (262)
Q Consensus         6 ~i~~~~~-~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~---~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~   81 (262)
                      +|+.++. ....+.+..|...+.+.+|+|||+.|+..+.++   .|.+                                
T Consensus       185 ~l~i~D~~g~~~~~lt~~~~~v~~p~wSpDg~~la~~s~~~~~~~l~~--------------------------------  232 (433)
T PRK04922        185 ALQVADSDGYNPQTILRSAEPILSPAWSPDGKKLAYVSFERGRSAIYV--------------------------------  232 (433)
T ss_pred             EEEEECCCCCCceEeecCCCccccccCCCCCCEEEEEecCCCCcEEEE--------------------------------
Confidence            3555542 333455666778899999999999998876432   3444                                


Q ss_pred             EEEEecCCCccceecccCCcceEEEEEeCCCCEEE-eecCCC--eEEEEECCCCeeeeeeecCCCCeeeEEEccCCCEEE
Q 042146           82 IRLWDVPTATSLKTLIGHTNYVFCINFNPQSNRIV-SDTFNE--TIRIWDIKTGKCLKVLPAHSDPVTAIDFNRDGTMIV  158 (262)
Q Consensus        82 i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~-~~~~dg--~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~  158 (262)
                         ||+.+++.. .+....+...+.+|+|+|+.++ +.+.+|  .|++||+.+++. ..+..+.......+|+|+|+.|+
T Consensus       233 ---~dl~~g~~~-~l~~~~g~~~~~~~SpDG~~l~~~~s~~g~~~Iy~~d~~~g~~-~~lt~~~~~~~~~~~spDG~~l~  307 (433)
T PRK04922        233 ---QDLATGQRE-LVASFRGINGAPSFSPDGRRLALTLSRDGNPEIYVMDLGSRQL-TRLTNHFGIDTEPTWAPDGKSIY  307 (433)
T ss_pred             ---EECCCCCEE-EeccCCCCccCceECCCCCEEEEEEeCCCCceEEEEECCCCCe-EECccCCCCccceEECCCCCEEE
Confidence               455444332 2222333455789999999775 445555  699999988764 34445555567889999999887


Q ss_pred             EEe-CCCe--EEEEeCCC-------------------CCccEEEEEcCCC---eEEEEecCCCceeeEEeccCCceeEEE
Q 042146          159 TSS-YDGL--YRILDAST-------------------PNGKFILVGTLDN---TLRLWNYSTRKILKTYSGYTNSKYCIS  213 (262)
Q Consensus       159 ~~~-~dg~--i~~~d~~~-------------------~~~~~l~~~~~dg---~i~i~d~~~~~~~~~~~~~~~~~~~~~  213 (262)
                      .++ .+|.  |.++|+..                   |++++++..+.++   .|.+||+.+++.. .+.          
T Consensus       308 f~sd~~g~~~iy~~dl~~g~~~~lt~~g~~~~~~~~SpDG~~Ia~~~~~~~~~~I~v~d~~~g~~~-~Lt----------  376 (433)
T PRK04922        308 FTSDRGGRPQIYRVAASGGSAERLTFQGNYNARASVSPDGKKIAMVHGSGGQYRIAVMDLSTGSVR-TLT----------  376 (433)
T ss_pred             EEECCCCCceEEEEECCCCCeEEeecCCCCccCEEECCCCCEEEEEECCCCceeEEEEECCCCCeE-ECC----------
Confidence            766 3444  66666543                   6788877665332   5888898776654 222          


Q ss_pred             EEEecCCCeeEEccccceEEEEEcCCCCeEEEeeec-CCCcEEEEeec
Q 042146          214 STFSVTNGKYIVSHRDPVISVASHPAKNIIASGALD-NDRTMKIWTQE  260 (262)
Q Consensus       214 ~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~d-~d~~i~iw~~~  260 (262)
                                   +........|+|+|+.|+..+.+ ..+.|.+++++
T Consensus       377 -------------~~~~~~~p~~spdG~~i~~~s~~~g~~~L~~~~~~  411 (433)
T PRK04922        377 -------------PGSLDESPSFAPNGSMVLYATREGGRGVLAAVSTD  411 (433)
T ss_pred             -------------CCCCCCCceECCCCCEEEEEEecCCceEEEEEECC
Confidence                         21223456899999988777621 12345666553

>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A

Probab=99.61  E-value=9.7e-13  Score=103.55  Aligned_cols=162  Identities=20%  Similarity=0.248  Sum_probs=100.3

Q ss_pred             CCCceeeec--ccccceecccCcCceEEEEEccCCCeEEEecCCCeEEEeecCCCCCCCCCCCCCCccccCCccccccce
Q 042146            3 SDRSLESFR--PYTLTQTLNGHLRAVSYVKFSHDGRLLTSSSAEKTLLTYSLSSISNFDSTPPSPLQKFTGHEQGISDLA   80 (262)
Q Consensus         3 ~d~~i~~~~--~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~   80 (262)
                      .++++..++  +.+.+.++......-..+.|+|||+++++++.||.|.++                              
T Consensus        14 ~~~~v~viD~~t~~~~~~i~~~~~~h~~~~~s~Dgr~~yv~~rdg~vsvi------------------------------   63 (369)
T PF02239_consen   14 GSGSVAVIDGATNKVVARIPTGGAPHAGLKFSPDGRYLYVANRDGTVSVI------------------------------   63 (369)
T ss_dssp             GGTEEEEEETTT-SEEEEEE-STTEEEEEE-TT-SSEEEEEETTSEEEEE------------------------------
T ss_pred             CCCEEEEEECCCCeEEEEEcCCCCceeEEEecCCCCEEEEEcCCCeEEEE------------------------------
Confidence            356777776  456778887654444557899999999999999987776                              


Q ss_pred             eEEEEecCCCccceecccCCcceEEEEEeCCCCEEEeec-CCCeEEEEECCCCeeeeeeecC-------CCCeeeEEEcc
Q 042146           81 TIRLWDVPTATSLKTLIGHTNYVFCINFNPQSNRIVSDT-FNETIRIWDIKTGKCLKVLPAH-------SDPVTAIDFNR  152 (262)
Q Consensus        81 ~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~dg~i~vwd~~~~~~~~~~~~~-------~~~v~~~~~~~  152 (262)
                           |+.+.+.+.+++. ......+++++||++++++. ..+.+.++|.++.+++..+...       ...+.++..+|
T Consensus        64 -----D~~~~~~v~~i~~-G~~~~~i~~s~DG~~~~v~n~~~~~v~v~D~~tle~v~~I~~~~~~~~~~~~Rv~aIv~s~  137 (369)
T PF02239_consen   64 -----DLATGKVVATIKV-GGNPRGIAVSPDGKYVYVANYEPGTVSVIDAETLEPVKTIPTGGMPVDGPESRVAAIVASP  137 (369)
T ss_dssp             -----ETTSSSEEEEEE--SSEEEEEEE--TTTEEEEEEEETTEEEEEETTT--EEEEEE--EE-TTTS---EEEEEE-S
T ss_pred             -----ECCcccEEEEEec-CCCcceEEEcCCCCEEEEEecCCCceeEeccccccceeecccccccccccCCCceeEEecC
Confidence                 5556677777664 34467899999999988765 6889999999998887776432       23566676677


Q ss_pred             CCCEEEEEeC-CCeEEEEeCCC---------------------CCccEEEEE-cCCCeEEEEecCCCceee
Q 042146          153 DGTMIVTSSY-DGLYRILDAST---------------------PNGKFILVG-TLDNTLRLWNYSTRKILK  200 (262)
Q Consensus       153 ~~~~l~~~~~-dg~i~~~d~~~---------------------~~~~~l~~~-~~dg~i~i~d~~~~~~~~  200 (262)
                      ....++.+-. .+.|.+.|...                     ++++|++++ ..+..|-++|.++++.+.
T Consensus       138 ~~~~fVv~lkd~~~I~vVdy~d~~~~~~~~i~~g~~~~D~~~dpdgry~~va~~~sn~i~viD~~~~k~v~  208 (369)
T PF02239_consen  138 GRPEFVVNLKDTGEIWVVDYSDPKNLKVTTIKVGRFPHDGGFDPDGRYFLVAANGSNKIAVIDTKTGKLVA  208 (369)
T ss_dssp             SSSEEEEEETTTTEEEEEETTTSSCEEEEEEE--TTEEEEEE-TTSSEEEEEEGGGTEEEEEETTTTEEEE
T ss_pred             CCCEEEEEEccCCeEEEEEeccccccceeeecccccccccccCcccceeeecccccceeEEEeeccceEEE
Confidence            6665555444 36666666443                     556655443 344556666665554443

...

>PRK05137 tolB translocation protein TolB; Provisional

Probab=99.61  E-value=7.5e-13  Score=107.47  Aligned_cols=194  Identities=17%  Similarity=0.167  Sum_probs=123.2

Q ss_pred             ceeeec-ccccceecccCcCceEEEEEccCCCeEEEecCC---CeEEEeecCCCCCCCCCCCCCCccccCCcccccccee
Q 042146            6 SLESFR-PYTLTQTLNGHLRAVSYVKFSHDGRLLTSSSAE---KTLLTYSLSSISNFDSTPPSPLQKFTGHEQGISDLAT   81 (262)
Q Consensus         6 ~i~~~~-~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d---~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~   81 (262)
                      .|+.++ .....+.+..|...+.+.+|+|||+.|+..+..   ..|.                                 
T Consensus       183 ~l~~~d~dg~~~~~lt~~~~~v~~p~wSpDG~~lay~s~~~g~~~i~---------------------------------  229 (435)
T PRK05137        183 RLAIMDQDGANVRYLTDGSSLVLTPRFSPNRQEITYMSYANGRPRVY---------------------------------  229 (435)
T ss_pred             EEEEECCCCCCcEEEecCCCCeEeeEECCCCCEEEEEEecCCCCEEE---------------------------------
Confidence            444444 233445666788899999999999998887642   3444                                 


Q ss_pred             EEEEecCCCccceecccCCcceEEEEEeCCCCEEE-eecCCC--eEEEEECCCCeeeeeeecCCCCeeeEEEccCCCEEE
Q 042146           82 IRLWDVPTATSLKTLIGHTNYVFCINFNPQSNRIV-SDTFNE--TIRIWDIKTGKCLKVLPAHSDPVTAIDFNRDGTMIV  158 (262)
Q Consensus        82 i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~-~~~~dg--~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~  158 (262)
                        +||+.+++. ..+..+.+.+...+|+|+|+.|+ +.+.++  .|.+||+.+++. ..+..+........|+|||+.++
T Consensus       230 --~~dl~~g~~-~~l~~~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~d~~~~~~-~~Lt~~~~~~~~~~~spDG~~i~  305 (435)
T PRK05137        230 --LLDLETGQR-ELVGNFPGMTFAPRFSPDGRKVVMSLSQGGNTDIYTMDLRSGTT-TRLTDSPAIDTSPSYSPDGSQIV  305 (435)
T ss_pred             --EEECCCCcE-EEeecCCCcccCcEECCCCCEEEEEEecCCCceEEEEECCCCce-EEccCCCCccCceeEcCCCCEEE
Confidence              555555443 23334455677889999998775 555555  488889887765 44555666677899999999887


Q ss_pred             EEeC-CC--eEEEEeCCC-------------------CCccEEEEEcCC---CeEEEEecCCCceeeEEeccCCceeEEE
Q 042146          159 TSSY-DG--LYRILDAST-------------------PNGKFILVGTLD---NTLRLWNYSTRKILKTYSGYTNSKYCIS  213 (262)
Q Consensus       159 ~~~~-dg--~i~~~d~~~-------------------~~~~~l~~~~~d---g~i~i~d~~~~~~~~~~~~~~~~~~~~~  213 (262)
                      ..+. +|  .|.++|+..                   |+++.|+....+   ..|.+||+..+. ...+.          
T Consensus       306 f~s~~~g~~~Iy~~d~~g~~~~~lt~~~~~~~~~~~SpdG~~ia~~~~~~~~~~i~~~d~~~~~-~~~lt----------  374 (435)
T PRK05137        306 FESDRSGSPQLYVMNADGSNPRRISFGGGRYSTPVWSPRGDLIAFTKQGGGQFSIGVMKPDGSG-ERILT----------  374 (435)
T ss_pred             EEECCCCCCeEEEEECCCCCeEEeecCCCcccCeEECCCCCEEEEEEcCCCceEEEEEECCCCc-eEecc----------
Confidence            7663 33  577777654                   566666655432   246666654332 22221          


Q ss_pred             EEEecCCCeeEEccccceEEEEEcCCCCeEEEeeecCC----CcEEEEeec
Q 042146          214 STFSVTNGKYIVSHRDPVISVASHPAKNIIASGALDND----RTMKIWTQE  260 (262)
Q Consensus       214 ~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~d~d----~~i~iw~~~  260 (262)
                                   ....+....|+|+|+.|+..+.+..    ..+.+.+++
T Consensus       375 -------------~~~~~~~p~~spDG~~i~~~~~~~~~~~~~~L~~~dl~  412 (435)
T PRK05137        375 -------------SGFLVEGPTWAPNGRVIMFFRQTPGSGGAPKLYTVDLT  412 (435)
T ss_pred             -------------CCCCCCCCeECCCCCEEEEEEccCCCCCcceEEEEECC
Confidence                         2224567899999998887652111    245555553

>KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown]

Probab=99.60  E-value=8.3e-14  Score=100.82  Aligned_cols=185  Identities=18%  Similarity=0.257  Sum_probs=132.9

Q ss_pred             cCcCceEEEEEcc-CCCeEEEecCCCeEEEeecCCCCCCCCCCCCCCccccCCccccccceeEEEEecCCCccceecccC
Q 042146           21 GHLRAVSYVKFSH-DGRLLTSSSAEKTLLTYSLSSISNFDSTPPSPLQKFTGHEQGISDLATIRLWDVPTATSLKTLIGH   99 (262)
Q Consensus        21 ~h~~~v~~~~~~~-~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~i~v~d~~~~~~~~~~~~~   99 (262)
                      .+..+++++.|+. +-+++.+.|-|-+..|||++..                                ..+....++..|
T Consensus       148 ~~~aPlTSFDWne~dp~~igtSSiDTTCTiWdie~~--------------------------------~~~~vkTQLIAH  195 (364)
T KOG0290|consen  148 EFCAPLTSFDWNEVDPNLIGTSSIDTTCTIWDIETG--------------------------------VSGTVKTQLIAH  195 (364)
T ss_pred             ccCCcccccccccCCcceeEeecccCeEEEEEEeec--------------------------------cccceeeEEEec
Confidence            4678999999987 6678999999999988877542                                022344567889


Q ss_pred             CcceEEEEEeCCC-CEEEeecCCCeEEEEECCCCeeeeee---ecCCCCeeeEEEcc-CCCEEEEEeCC-CeEEEEeCCC
Q 042146          100 TNYVFCINFNPQS-NRIVSDTFNETIRIWDIKTGKCLKVL---PAHSDPVTAIDFNR-DGTMIVTSSYD-GLYRILDAST  173 (262)
Q Consensus       100 ~~~v~~~~~~~~~-~~l~~~~~dg~i~vwd~~~~~~~~~~---~~~~~~v~~~~~~~-~~~~l~~~~~d-g~i~~~d~~~  173 (262)
                      ..+|..++|...+ +.+++.+.||.|+++|+|..+.-..+   .....+...++|++ |.+++++-..| ..|.+.|+|.
T Consensus       196 DKEV~DIaf~~~s~~~FASvgaDGSvRmFDLR~leHSTIIYE~p~~~~pLlRLswnkqDpnymATf~~dS~~V~iLDiR~  275 (364)
T KOG0290|consen  196 DKEVYDIAFLKGSRDVFASVGADGSVRMFDLRSLEHSTIIYEDPSPSTPLLRLSWNKQDPNYMATFAMDSNKVVILDIRV  275 (364)
T ss_pred             CcceeEEEeccCccceEEEecCCCcEEEEEecccccceEEecCCCCCCcceeeccCcCCchHHhhhhcCCceEEEEEecC
Confidence            9999999999844 56889999999999999976543333   22345788899988 66778776654 5799999987


Q ss_pred             ----------------------CCccEEEEEcCCCeEEEEecCCCceeeEEeccCCceeEEEEEEecCCCeeEEccccce
Q 042146          174 ----------------------PNGKFILVGTLDNTLRLWNYSTRKILKTYSGYTNSKYCISSTFSVTNGKYIVSHRDPV  231 (262)
Q Consensus       174 ----------------------~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v  231 (262)
                                            .....+++++.|..+.+||+...-.    +....             .-+.....+.|
T Consensus       276 P~tpva~L~~H~a~VNgIaWaPhS~~hictaGDD~qaliWDl~q~~~----~~~~d-------------Pilay~a~~EV  338 (364)
T KOG0290|consen  276 PCTPVARLRNHQASVNGIAWAPHSSSHICTAGDDCQALIWDLQQMPR----ENGED-------------PILAYTAGGEV  338 (364)
T ss_pred             CCcceehhhcCcccccceEecCCCCceeeecCCcceEEEEecccccc----cCCCC-------------chhhhhcccee
Confidence                                  3567899999999999999875221    00000             00111156789


Q ss_pred             EEEEEcCC-CCeEEEeeecCCCcEEEE
Q 042146          232 ISVASHPA-KNIIASGALDNDRTMKIW  257 (262)
Q Consensus       232 ~~~~~~p~-~~~l~~~~~d~d~~i~iw  257 (262)
                      +.+.|+|. ...++.+.   ++++.+-
T Consensus       339 Nqi~Ws~~~~Dwiai~~---~kkleiL  362 (364)
T KOG0290|consen  339 NQIQWSSSQPDWIAICF---GKKLEIL  362 (364)
T ss_pred             eeeeecccCCCEEEEEe---cCeeeEE
Confidence            99999975 55666664   5566553

>KOG3881 consensus Uncharacterized conserved protein [Function unknown]

Probab=99.60  E-value=1.5e-13  Score=103.18  Aligned_cols=182  Identities=19%  Similarity=0.264  Sum_probs=135.4

Q ss_pred             CcCceEEEEEccCCCeEEEecCCCeEEEeecCCCCCCCCCCCCCCccccCCccccccceeEEEEecCCCccceecccCCc
Q 042146           22 HLRAVSYVKFSHDGRLLTSSSAEKTLLTYSLSSISNFDSTPPSPLQKFTGHEQGISDLATIRLWDVPTATSLKTLIGHTN  101 (262)
Q Consensus        22 h~~~v~~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~i~v~d~~~~~~~~~~~~~~~  101 (262)
                      ..++|..++.. + ..|++|-.+|.+.+|......                              +. ..++..+..+ .
T Consensus       104 ~~~~I~gl~~~-d-g~Litc~~sG~l~~~~~k~~d------------------------------~h-ss~l~~la~g-~  149 (412)
T KOG3881|consen  104 GTKSIKGLKLA-D-GTLITCVSSGNLQVRHDKSGD------------------------------LH-SSKLIKLATG-P  149 (412)
T ss_pred             ccccccchhhc-C-CEEEEEecCCcEEEEeccCCc------------------------------cc-cccceeeecC-C
Confidence            34455554442 2 357777788888888654321                              11 1222223222 4


Q ss_pred             ceEEEEEeCC-CCEEEeecCC--CeEEEEECCCCeeeeeeecCC---------CCeeeEEEccC--CCEEEEEeCCCeEE
Q 042146          102 YVFCINFNPQ-SNRIVSDTFN--ETIRIWDIKTGKCLKVLPAHS---------DPVTAIDFNRD--GTMIVTSSYDGLYR  167 (262)
Q Consensus       102 ~v~~~~~~~~-~~~l~~~~~d--g~i~vwd~~~~~~~~~~~~~~---------~~v~~~~~~~~--~~~l~~~~~dg~i~  167 (262)
                      .+..+.-+|. ...+++|+..  ..+.+||++..+.+..-+.-.         -.++++.|-|.  ...|++++.-+.++
T Consensus       150 g~~~~r~~~~~p~Iva~GGke~~n~lkiwdle~~~qiw~aKNvpnD~L~LrVPvW~tdi~Fl~g~~~~~fat~T~~hqvR  229 (412)
T KOG3881|consen  150 GLYDVRQTDTDPYIVATGGKENINELKIWDLEQSKQIWSAKNVPNDRLGLRVPVWITDIRFLEGSPNYKFATITRYHQVR  229 (412)
T ss_pred             ceeeeccCCCCCceEecCchhcccceeeeecccceeeeeccCCCCccccceeeeeeccceecCCCCCceEEEEecceeEE
Confidence            4566666664 4456669988  889999999886665443211         13678889886  78999999999999


Q ss_pred             EEeCCC---------------------CCccEEEEEcCCCeEEEEecCCCceeeE-EeccCCceeEEEEEEecCCCeeEE
Q 042146          168 ILDAST---------------------PNGKFILVGTLDNTLRLWNYSTRKILKT-YSGYTNSKYCISSTFSVTNGKYIV  225 (262)
Q Consensus       168 ~~d~~~---------------------~~~~~l~~~~~dg~i~i~d~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~  225 (262)
                      +||.+.                     |+++++++|..-|.+..||++.++.... +.+                     
T Consensus       230 ~YDt~~qRRPV~~fd~~E~~is~~~l~p~gn~Iy~gn~~g~l~~FD~r~~kl~g~~~kg---------------------  288 (412)
T KOG3881|consen  230 LYDTRHQRRPVAQFDFLENPISSTGLTPSGNFIYTGNTKGQLAKFDLRGGKLLGCGLKG---------------------  288 (412)
T ss_pred             EecCcccCcceeEeccccCcceeeeecCCCcEEEEecccchhheecccCceeeccccCC---------------------
Confidence            999876                     8999999999999999999999988876 665                     


Q ss_pred             ccccceEEEEEcCCCCeEEEeeecCCCcEEEEeecc
Q 042146          226 SHRDPVISVASHPAKNIIASGALDNDRTMKIWTQEK  261 (262)
Q Consensus       226 ~~~~~v~~~~~~p~~~~l~~~~~d~d~~i~iw~~~~  261 (262)
                       ..+.|+++..+|.+++|+++|  -|..|||+|++.
T Consensus       289 -~tGsirsih~hp~~~~las~G--LDRyvRIhD~kt  321 (412)
T KOG3881|consen  289 -ITGSIRSIHCHPTHPVLASCG--LDRYVRIHDIKT  321 (412)
T ss_pred             -ccCCcceEEEcCCCceEEeec--cceeEEEeeccc
Confidence             778999999999999999999  789999999875

>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins

Probab=99.60  E-value=6.9e-14  Score=100.39  Aligned_cols=124  Identities=19%  Similarity=0.402  Sum_probs=91.1

Q ss_pred             CcCceEEEEEccCCCeEEEe--cCCCeEEEeecCCCCCCCCCCCCCCccccCCccccccceeEEEEecCCCccceecccC
Q 042146           22 HLRAVSYVKFSHDGRLLTSS--SAEKTLLTYSLSSISNFDSTPPSPLQKFTGHEQGISDLATIRLWDVPTATSLKTLIGH   99 (262)
Q Consensus        22 h~~~v~~~~~~~~~~~l~s~--~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~i~v~d~~~~~~~~~~~~~   99 (262)
                      ..++|.+++|+|+|+.||+.  ..++.|.+||+                                   + ++.+..+.  
T Consensus        58 ~~~~I~~~~WsP~g~~favi~g~~~~~v~lyd~-----------------------------------~-~~~i~~~~--   99 (194)
T PF08662_consen   58 KEGPIHDVAWSPNGNEFAVIYGSMPAKVTLYDV-----------------------------------K-GKKIFSFG--   99 (194)
T ss_pred             CCCceEEEEECcCCCEEEEEEccCCcccEEEcC-----------------------------------c-ccEeEeec--
Confidence            34579999999999987654  35567777754                                   2 34444443  


Q ss_pred             CcceEEEEEeCCCCEEEeecC---CCeEEEEECCCCeeeeeeecCCCCeeeEEEccCCCEEEEEeCCCeEEEEeCCCCCc
Q 042146          100 TNYVFCINFNPQSNRIVSDTF---NETIRIWDIKTGKCLKVLPAHSDPVTAIDFNRDGTMIVTSSYDGLYRILDASTPNG  176 (262)
Q Consensus       100 ~~~v~~~~~~~~~~~l~~~~~---dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~  176 (262)
                      ...++.+.|+|+|+++++++.   .|.|.+||.++.+.+.... |. .++.++|+|+|++|+++......          
T Consensus       100 ~~~~n~i~wsP~G~~l~~~g~~n~~G~l~~wd~~~~~~i~~~~-~~-~~t~~~WsPdGr~~~ta~t~~r~----------  167 (194)
T PF08662_consen  100 TQPRNTISWSPDGRFLVLAGFGNLNGDLEFWDVRKKKKISTFE-HS-DATDVEWSPDGRYLATATTSPRL----------  167 (194)
T ss_pred             CCCceEEEECCCCCEEEEEEccCCCcEEEEEECCCCEEeeccc-cC-cEEEEEEcCCCCEEEEEEeccce----------
Confidence            456789999999999998764   4679999999888887764 33 47899999999999998754322          


Q ss_pred             cEEEEEcCCCeEEEEecCCCceeeEE
Q 042146          177 KFILVGTLDNTLRLWNYSTRKILKTY  202 (262)
Q Consensus       177 ~~l~~~~~dg~i~i~d~~~~~~~~~~  202 (262)
                            ..|..++||+.. |+++...
T Consensus       168 ------~~dng~~Iw~~~-G~~l~~~  186 (194)
T PF08662_consen  168 ------RVDNGFKIWSFQ-GRLLYKK  186 (194)
T ss_pred             ------eccccEEEEEec-CeEeEec
Confidence                  235678888874 6665544

>KOG4547 consensus WD40 repeat-containing protein [General function prediction only]

Probab=99.58  E-value=2.2e-13  Score=107.27  Aligned_cols=182  Identities=16%  Similarity=0.203  Sum_probs=135.9

Q ss_pred             cCCCeEEEecCCCeEEEeecCCCCCCCCCCCCCCcc---------ccCCccc---------------------cccceeE
Q 042146           33 HDGRLLTSSSAEKTLLTYSLSSISNFDSTPPSPLQK---------FTGHEQG---------------------ISDLATI   82 (262)
Q Consensus        33 ~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~---------~~~~~~~---------------------v~~~~~i   82 (262)
                      |-..|+|....||.+++|+....+......+.....         +.....+                     -...+.|
T Consensus         3 ~~~~~~A~~~~~g~l~iw~t~~~~~~~e~~p~~~~s~t~~~~~w~L~~~~s~~k~~~~~~~~~~s~~t~~lvlgt~~g~v   82 (541)
T KOG4547|consen    3 PALDYFALSTGDGRLRIWDTAKNQLQQEFAPIASLSGTCTYTKWGLSADYSPMKWLSLEKAKKASLDTSMLVLGTPQGSV   82 (541)
T ss_pred             chhheEeecCCCCeEEEEEccCceeeeeeccchhccCcceeEEEEEEeccchHHHHhHHHHhhccCCceEEEeecCCccE
Confidence            456799999999999999987654322221111000         0000000                     0111178


Q ss_pred             EEEecCCCccceecc--cCCcceEEEEEeCCCCEEEeecCCCeEEEEECCCCeeeeeeecCCCCeeeEEEccCCCEEEEE
Q 042146           83 RLWDVPTATSLKTLI--GHTNYVFCINFNPQSNRIVSDTFNETIRIWDIKTGKCLKVLPAHSDPVTAIDFNRDGTMIVTS  160 (262)
Q Consensus        83 ~v~d~~~~~~~~~~~--~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~  160 (262)
                      .+++...++....+.  .|.+.|+++.++.+-..|.+++.|+.+..|++...+.+...+.....+.+++.+||+..++++
T Consensus        83 ~~ys~~~g~it~~~st~~h~~~v~~~~~~~~~~ciyS~~ad~~v~~~~~~~~~~~~~~~~~~~~~~sl~is~D~~~l~~a  162 (541)
T KOG4547|consen   83 LLYSVAGGEITAKLSTDKHYGNVNEILDAQRLGCIYSVGADLKVVYILEKEKVIIRIWKEQKPLVSSLCISPDGKILLTA  162 (541)
T ss_pred             EEEEecCCeEEEEEecCCCCCcceeeecccccCceEecCCceeEEEEecccceeeeeeccCCCccceEEEcCCCCEEEec
Confidence            888888887766654  689999999999998999999999999999999999999998888899999999999888877


Q ss_pred             eCCCeEEEEeCCCCCccEEEEEcCCCeEEEEecCCCceeeEEeccCCceeEEEEEEecCCCeeEEccccceEEEEEcCC-
Q 042146          161 SYDGLYRILDASTPNGKFILVGTLDNTLRLWNYSTRKILKTYSGYTNSKYCISSTFSVTNGKYIVSHRDPVISVASHPA-  239 (262)
Q Consensus       161 ~~dg~i~~~d~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~-  239 (262)
                      +                        +.|.+||+++++.+..|.+                      |.++|++++|-.+ 
T Consensus       163 s------------------------~~ik~~~~~~kevv~~ftg----------------------h~s~v~t~~f~~~~  196 (541)
T KOG4547|consen  163 S------------------------RQIKVLDIETKEVVITFTG----------------------HGSPVRTLSFTTLI  196 (541)
T ss_pred             c------------------------ceEEEEEccCceEEEEecC----------------------CCcceEEEEEEEec
Confidence            6                        4699999999999999998                      7788888888766 


Q ss_pred             ----CCeEEEeeecCCCcEEEEeecc
Q 042146          240 ----KNIIASGALDNDRTMKIWTQEK  261 (262)
Q Consensus       240 ----~~~l~~~~~d~d~~i~iw~~~~  261 (262)
                          |.++.++.. .+.-+.+|.+.+
T Consensus       197 ~g~~G~~vLssa~-~~r~i~~w~v~~  221 (541)
T KOG4547|consen  197 DGIIGKYVLSSAA-AERGITVWVVEK  221 (541)
T ss_pred             cccccceeeeccc-cccceeEEEEEc
Confidence                555554431 456677887654

>PRK02889 tolB translocation protein TolB; Provisional

Probab=99.58  E-value=9.3e-13  Score=106.50  Aligned_cols=183  Identities=17%  Similarity=0.145  Sum_probs=117.3

Q ss_pred             ceeeecc-cccceecccCcCceEEEEEccCCCeEEEecCCC-eEEEeecCCCCCCCCCCCCCCccccCCccccccceeEE
Q 042146            6 SLESFRP-YTLTQTLNGHLRAVSYVKFSHDGRLLTSSSAEK-TLLTYSLSSISNFDSTPPSPLQKFTGHEQGISDLATIR   83 (262)
Q Consensus         6 ~i~~~~~-~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~-~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~i~   83 (262)
                      .|+.++. ....+.+..+...+.+.+|+|||+.|+..+.++ .-                                 .|.
T Consensus       177 ~L~~~D~dG~~~~~l~~~~~~v~~p~wSPDG~~la~~s~~~~~~---------------------------------~I~  223 (427)
T PRK02889        177 QLQISDADGQNAQSALSSPEPIISPAWSPDGTKLAYVSFESKKP---------------------------------VVY  223 (427)
T ss_pred             EEEEECCCCCCceEeccCCCCcccceEcCCCCEEEEEEccCCCc---------------------------------EEE
Confidence            3555442 333445556788899999999999998876432 10                                 244


Q ss_pred             EEecCCCccceecccCCcceEEEEEeCCCCEEE-eecCCCeEEEE--ECCCCeeeeeeecCCCCeeeEEEccCCCEEEEE
Q 042146           84 LWDVPTATSLKTLIGHTNYVFCINFNPQSNRIV-SDTFNETIRIW--DIKTGKCLKVLPAHSDPVTAIDFNRDGTMIVTS  160 (262)
Q Consensus        84 v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~-~~~~dg~i~vw--d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~  160 (262)
                      +||+.+++... +......+...+|+|||+.|+ +.+.+|...+|  |+..+. ...+..+........|+|||+.|+..
T Consensus       224 ~~dl~~g~~~~-l~~~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~d~~~~~-~~~lt~~~~~~~~~~wSpDG~~l~f~  301 (427)
T PRK02889        224 VHDLATGRRRV-VANFKGSNSAPAWSPDGRTLAVALSRDGNSQIYTVNADGSG-LRRLTQSSGIDTEPFFSPDGRSIYFT  301 (427)
T ss_pred             EEECCCCCEEE-eecCCCCccceEECCCCCEEEEEEccCCCceEEEEECCCCC-cEECCCCCCCCcCeEEcCCCCEEEEE
Confidence            55665554322 222334566889999999876 56777765555  555444 44555555566788999999988766


Q ss_pred             eC-CCeEEEEeCC--C-------------------CCccEEEEEcCCC---eEEEEecCCCceeeEEeccCCceeEEEEE
Q 042146          161 SY-DGLYRILDAS--T-------------------PNGKFILVGTLDN---TLRLWNYSTRKILKTYSGYTNSKYCISST  215 (262)
Q Consensus       161 ~~-dg~i~~~d~~--~-------------------~~~~~l~~~~~dg---~i~i~d~~~~~~~~~~~~~~~~~~~~~~~  215 (262)
                      +. +|...+|.+.  .                   |++++++..+.++   .|.+||+.+++... +..           
T Consensus       302 s~~~g~~~Iy~~~~~~g~~~~lt~~g~~~~~~~~SpDG~~Ia~~s~~~g~~~I~v~d~~~g~~~~-lt~-----------  369 (427)
T PRK02889        302 SDRGGAPQIYRMPASGGAAQRVTFTGSYNTSPRISPDGKLLAYISRVGGAFKLYVQDLATGQVTA-LTD-----------  369 (427)
T ss_pred             ecCCCCcEEEEEECCCCceEEEecCCCCcCceEECCCCCEEEEEEccCCcEEEEEEECCCCCeEE-ccC-----------
Confidence            53 4555555432  2                   7888887766544   58889988776432 221           


Q ss_pred             EecCCCeeEEccccceEEEEEcCCCCeEEEee
Q 042146          216 FSVTNGKYIVSHRDPVISVASHPAKNIIASGA  247 (262)
Q Consensus       216 ~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~  247 (262)
                                  ........|+|+++.|+.++
T Consensus       370 ------------~~~~~~p~~spdg~~l~~~~  389 (427)
T PRK02889        370 ------------TTRDESPSFAPNGRYILYAT  389 (427)
T ss_pred             ------------CCCccCceECCCCCEEEEEE
Confidence                        11235678999999888877

>PRK11028 6-phosphogluconolactonase; Provisional

Probab=99.57  E-value=3.9e-12  Score=99.80  Aligned_cols=162  Identities=8%  Similarity=0.144  Sum_probs=107.5

Q ss_pred             eEEEEecCC-Ccc--ceecccCCcceEEEEEeCCCCEEEeec-CCCeEEEEECCC-Ce---eeeeeecCCCCeeeEEEcc
Q 042146           81 TIRLWDVPT-ATS--LKTLIGHTNYVFCINFNPQSNRIVSDT-FNETIRIWDIKT-GK---CLKVLPAHSDPVTAIDFNR  152 (262)
Q Consensus        81 ~i~v~d~~~-~~~--~~~~~~~~~~v~~~~~~~~~~~l~~~~-~dg~i~vwd~~~-~~---~~~~~~~~~~~v~~~~~~~  152 (262)
                      .|.+|++.. +..  ..... .......++++|+++++++++ .++.|.+|++.+ +.   .+..+. +......++++|
T Consensus        58 ~i~~~~~~~~g~l~~~~~~~-~~~~p~~i~~~~~g~~l~v~~~~~~~v~v~~~~~~g~~~~~~~~~~-~~~~~~~~~~~p  135 (330)
T PRK11028         58 RVLSYRIADDGALTFAAESP-LPGSPTHISTDHQGRFLFSASYNANCVSVSPLDKDGIPVAPIQIIE-GLEGCHSANIDP  135 (330)
T ss_pred             cEEEEEECCCCceEEeeeec-CCCCceEEEECCCCCEEEEEEcCCCeEEEEEECCCCCCCCceeecc-CCCcccEeEeCC
Confidence            788888863 322  11221 233567899999999888765 478999999964 22   222232 234467789999


Q ss_pred             CCCEEEEEe-CCCeEEEEeCCC--------------------------CCccEEEEEcC-CCeEEEEecCC--Cc--eee
Q 042146          153 DGTMIVTSS-YDGLYRILDAST--------------------------PNGKFILVGTL-DNTLRLWNYST--RK--ILK  200 (262)
Q Consensus       153 ~~~~l~~~~-~dg~i~~~d~~~--------------------------~~~~~l~~~~~-dg~i~i~d~~~--~~--~~~  200 (262)
                      +++++++++ .++.|.+||+..                          |+++++++++. ++.|.+|++..  ++  .+.
T Consensus       136 ~g~~l~v~~~~~~~v~v~d~~~~g~l~~~~~~~~~~~~g~~p~~~~~~pdg~~lyv~~~~~~~v~v~~~~~~~~~~~~~~  215 (330)
T PRK11028        136 DNRTLWVPCLKEDRIRLFTLSDDGHLVAQEPAEVTTVEGAGPRHMVFHPNQQYAYCVNELNSSVDVWQLKDPHGEIECVQ  215 (330)
T ss_pred             CCCEEEEeeCCCCEEEEEEECCCCcccccCCCceecCCCCCCceEEECCCCCEEEEEecCCCEEEEEEEeCCCCCEEEEE
Confidence            999886555 669999998742                          67788888776 89999999973  32  223


Q ss_pred             EEeccCCceeEEEEEEecCCCeeEEccccceEEEEEcCCCCeEEEeeecCCCcEEEEeecc
Q 042146          201 TYSGYTNSKYCISSTFSVTNGKYIVSHRDPVISVASHPAKNIIASGALDNDRTMKIWTQEK  261 (262)
Q Consensus       201 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~d~d~~i~iw~~~~  261 (262)
                      .+.......                .+......+.++|++++|+++.. .++.|.+|++++
T Consensus       216 ~~~~~p~~~----------------~~~~~~~~i~~~pdg~~lyv~~~-~~~~I~v~~i~~  259 (330)
T PRK11028        216 TLDMMPADF----------------SDTRWAADIHITPDGRHLYACDR-TASLISVFSVSE  259 (330)
T ss_pred             EEecCCCcC----------------CCCccceeEEECCCCCEEEEecC-CCCeEEEEEEeC
Confidence            322110000                01223456899999999999863 378999999853

>PRK01742 tolB translocation protein TolB; Provisional

Probab=99.56  E-value=3.5e-13  Score=109.09  Aligned_cols=154  Identities=16%  Similarity=0.201  Sum_probs=108.4

Q ss_pred             eEEEEEccCCCeEEEec-CCCeEEEeecCCCCCCCCCCCCCCccccCCccccccceeEEEEecCCCccceecccCCcceE
Q 042146           26 VSYVKFSHDGRLLTSSS-AEKTLLTYSLSSISNFDSTPPSPLQKFTGHEQGISDLATIRLWDVPTATSLKTLIGHTNYVF  104 (262)
Q Consensus        26 v~~~~~~~~~~~l~s~~-~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~i~v~d~~~~~~~~~~~~~~~~v~  104 (262)
                      ....+|+|||+.|+.++ .+|.+.||                                 +||+.++. ...+..+...+.
T Consensus       250 ~~~~~wSPDG~~La~~~~~~g~~~Iy---------------------------------~~d~~~~~-~~~lt~~~~~~~  295 (429)
T PRK01742        250 NGAPAFSPDGSRLAFASSKDGVLNIY---------------------------------VMGANGGT-PSQLTSGAGNNT  295 (429)
T ss_pred             cCceeECCCCCEEEEEEecCCcEEEE---------------------------------EEECCCCC-eEeeccCCCCcC
Confidence            44689999999888764 67776665                                 34554443 334445566678


Q ss_pred             EEEEeCCCCEEEeec-CCCeEEEEECCCC-eeeeeeecCCCCeeeEEEccCCCEEEEEeCCCeEEEEeCCC---------
Q 042146          105 CINFNPQSNRIVSDT-FNETIRIWDIKTG-KCLKVLPAHSDPVTAIDFNRDGTMIVTSSYDGLYRILDAST---------  173 (262)
Q Consensus       105 ~~~~~~~~~~l~~~~-~dg~i~vwd~~~~-~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~d~~~---------  173 (262)
                      ...|+|+|+.++..+ .+|...||++... .....+ .+..  ....|+|+|+.++..+.++ +.+||+.+         
T Consensus       296 ~~~wSpDG~~i~f~s~~~g~~~I~~~~~~~~~~~~l-~~~~--~~~~~SpDG~~ia~~~~~~-i~~~Dl~~g~~~~lt~~  371 (429)
T PRK01742        296 EPSWSPDGQSILFTSDRSGSPQVYRMSASGGGASLV-GGRG--YSAQISADGKTLVMINGDN-VVKQDLTSGSTEVLSST  371 (429)
T ss_pred             CEEECCCCCEEEEEECCCCCceEEEEECCCCCeEEe-cCCC--CCccCCCCCCEEEEEcCCC-EEEEECCCCCeEEecCC
Confidence            899999999876554 5677888876432 222222 3333  4678999999998887765 44588654         


Q ss_pred             ---------CCccEEEEEcCCCeEEEEec--CCCceeeEEeccCCceeEEEEEEecCCCeeEEccccceEEEEEcCC
Q 042146          174 ---------PNGKFILVGTLDNTLRLWNY--STRKILKTYSGYTNSKYCISSTFSVTNGKYIVSHRDPVISVASHPA  239 (262)
Q Consensus       174 ---------~~~~~l~~~~~dg~i~i~d~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~  239 (262)
                               |++++|+.++.++...+|.+  .+|+.+..+..                      |.+.+...+|+|-
T Consensus       372 ~~~~~~~~sPdG~~i~~~s~~g~~~~l~~~~~~G~~~~~l~~----------------------~~g~~~~p~wsp~  426 (429)
T PRK01742        372 FLDESPSISPNGIMIIYSSTQGLGKVLQLVSADGRFKARLPG----------------------SDGQVKFPAWSPY  426 (429)
T ss_pred             CCCCCceECCCCCEEEEEEcCCCceEEEEEECCCCceEEccC----------------------CCCCCCCcccCCC
Confidence                     78999999998888887775  35777777765                      6677888899884

>KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]

Probab=99.55  E-value=1.6e-12  Score=96.42  Aligned_cols=224  Identities=18%  Similarity=0.315  Sum_probs=147.7

Q ss_pred             cCceEEEEEccCCCeEEEecCCCeEEEeecCCCCCCCCCCCCCCccccCCcccc--------------------------
Q 042146           23 LRAVSYVKFSHDGRLLTSSSAEKTLLTYSLSSISNFDSTPPSPLQKFTGHEQGI--------------------------   76 (262)
Q Consensus        23 ~~~v~~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v--------------------------   76 (262)
                      ..-|.++.|...|.+||+|..+|.|.++.-+.....   .......++.|....                          
T Consensus        25 adiis~vef~~~Ge~LatGdkgGRVv~f~r~~~~~~---ey~~~t~fqshepEFDYLkSleieEKinkIrw~~~~n~a~F  101 (433)
T KOG1354|consen   25 ADIISAVEFDHYGERLATGDKGGRVVLFEREKLYKG---EYNFQTEFQSHEPEFDYLKSLEIEEKINKIRWLDDGNLAEF  101 (433)
T ss_pred             hcceeeEEeecccceEeecCCCCeEEEeeccccccc---ceeeeeeeeccCcccchhhhhhhhhhhhhceecCCCCccEE
Confidence            456899999999999999999999999976543220   000111111111111                          


Q ss_pred             ---ccceeEEEEecCCCccce-----------------------------------ec-ccCCcceEEEEEeCCCCEEEe
Q 042146           77 ---SDLATIRLWDVPTATSLK-----------------------------------TL-IGHTNYVFCINFNPQSNRIVS  117 (262)
Q Consensus        77 ---~~~~~i~v~d~~~~~~~~-----------------------------------~~-~~~~~~v~~~~~~~~~~~l~~  117 (262)
                         ....+|++|.+.......                                   .+ ..|..-|++|.++.|+..+++
T Consensus       102 LlstNdktiKlWKi~er~~k~~~~~~~~~~~~~~~~~lr~p~~~~~~~~vea~prRv~aNaHtyhiNSIS~NsD~Et~lS  181 (433)
T KOG1354|consen  102 LLSTNDKTIKLWKIRERGSKKEGYNLPEEGPPGTITSLRLPVEGRHDLEVEASPRRVYANAHTYHINSISVNSDKETFLS  181 (433)
T ss_pred             EEecCCcceeeeeeeccccccccccccccCCCCccceeeceeeccccceeeeeeeeeccccceeEeeeeeecCccceEee
Confidence               112288999875321110                                   00 257778999999999999988


Q ss_pred             ecCCCeEEEEECCCC-ee--eeeeecCC-----CCeeeEEEcc-CCCEEEEEeCCCeEEEEeCCC---------------
Q 042146          118 DTFNETIRIWDIKTG-KC--LKVLPAHS-----DPVTAIDFNR-DGTMIVTSSYDGLYRILDAST---------------  173 (262)
Q Consensus       118 ~~~dg~i~vwd~~~~-~~--~~~~~~~~-----~~v~~~~~~~-~~~~l~~~~~dg~i~~~d~~~---------------  173 (262)
                      +. |=.|.+|+++-. +.  +.-++.++     .-|++..|+| .-++|+-++..|+|++.|+|.               
T Consensus       182 AD-dLRINLWnlei~d~sFnIVDIKP~nmEeLteVITsaEFhp~~cn~f~YSSSKGtIrLcDmR~~aLCd~hsKlfEepe  260 (433)
T KOG1354|consen  182 AD-DLRINLWNLEIIDQSFNIVDIKPANMEELTEVITSAEFHPHHCNVFVYSSSKGTIRLCDMRQSALCDAHSKLFEEPE  260 (433)
T ss_pred             cc-ceeeeeccccccCCceeEEEccccCHHHHHHHHhhhccCHhHccEEEEecCCCcEEEeechhhhhhcchhhhhcccc
Confidence            75 778999998632 21  22233333     4589999999 456888889999999999995               


Q ss_pred             ---------------------CCccEEEEEcCCCeEEEEec-CCCceeeEEeccCCceeEEEEEEecCCCeeEEccccce
Q 042146          174 ---------------------PNGKFILVGTLDNTLRLWNY-STRKILKTYSGYTNSKYCISSTFSVTNGKYIVSHRDPV  231 (262)
Q Consensus       174 ---------------------~~~~~l~~~~~dg~i~i~d~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v  231 (262)
                                           ++|+|+++-+. -+|++||+ ...+++.+++.|.....-+...+..+       .--.-
T Consensus       261 dp~~rsffseiIsSISDvKFs~sGryilsRDy-ltvk~wD~nme~~pv~t~~vh~~lr~kLc~lYEnD-------~IfdK  332 (433)
T KOG1354|consen  261 DPSSRSFFSEIISSISDVKFSHSGRYILSRDY-LTVKLWDLNMEAKPVETYPVHEYLRSKLCSLYEND-------AIFDK  332 (433)
T ss_pred             CCcchhhHHHHhhhhhceEEccCCcEEEEecc-ceeEEEeccccCCcceEEeehHhHHHHHHHHhhcc-------chhhe
Confidence                                 67888887653 57999999 45778888876543211111100000       00012


Q ss_pred             EEEEEcCCCCeEEEeeecCCCcEEEEeec
Q 042146          232 ISVASHPAKNIIASGALDNDRTMKIWTQE  260 (262)
Q Consensus       232 ~~~~~~p~~~~l~~~~~d~d~~i~iw~~~  260 (262)
                      .-++|+.++..++||+  ....+++++..
T Consensus       333 Fec~~sg~~~~v~TGs--y~n~frvf~~~  359 (433)
T KOG1354|consen  333 FECSWSGNDSYVMTGS--YNNVFRVFNLA  359 (433)
T ss_pred             eEEEEcCCcceEeccc--ccceEEEecCC
Confidence            4578999999999999  88999999843

>KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only]

Probab=99.55  E-value=9.6e-14  Score=102.25  Aligned_cols=201  Identities=16%  Similarity=0.210  Sum_probs=126.5

Q ss_pred             EEEccCCCeEEEecCCCeEEEeecCCCCCCCCCC---CCCCccccCCcccccc----ceeEEEEecCCCccceecccCCc
Q 042146           29 VKFSHDGRLLTSSSAEKTLLTYSLSSISNFDSTP---PSPLQKFTGHEQGISD----LATIRLWDVPTATSLKTLIGHTN  101 (262)
Q Consensus        29 ~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~---~~~~~~~~~~~~~v~~----~~~i~v~d~~~~~~~~~~~~~~~  101 (262)
                      ..|||+|+++|+.+.- .+.|-|.++.+......   ......+......+.+    ...|.+|++...+.-..+....+
T Consensus        14 c~fSp~g~yiAs~~~y-rlviRd~~tlq~~qlf~cldki~yieW~ads~~ilC~~yk~~~vqvwsl~Qpew~ckIdeg~a   92 (447)
T KOG4497|consen   14 CSFSPCGNYIASLSRY-RLVIRDSETLQLHQLFLCLDKIVYIEWKADSCHILCVAYKDPKVQVWSLVQPEWYCKIDEGQA   92 (447)
T ss_pred             eeECCCCCeeeeeeee-EEEEeccchhhHHHHHHHHHHhhheeeeccceeeeeeeeccceEEEEEeecceeEEEeccCCC
Confidence            6799999999999876 66677665432211000   0000111111111111    12799999999888888888889


Q ss_pred             ceEEEEEeCCCCE-EEeecCCCeEEEEECCCCeeeeeeecCCCCeeeEEEccCCCEEEEEeCCCeEE-------------
Q 042146          102 YVFCINFNPQSNR-IVSDTFNETIRIWDIKTGKCLKVLPAHSDPVTAIDFNRDGTMIVTSSYDGLYR-------------  167 (262)
Q Consensus       102 ~v~~~~~~~~~~~-l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~-------------  167 (262)
                      ++.+++|+|+|+. |.+...+-.|.+|.+.+.+.... +..+..+..++|+|+|++.+.++.-...-             
T Consensus        93 gls~~~WSPdgrhiL~tseF~lriTVWSL~t~~~~~~-~~pK~~~kg~~f~~dg~f~ai~sRrDCkdyv~i~~c~~W~ll  171 (447)
T KOG4497|consen   93 GLSSISWSPDGRHILLTSEFDLRITVWSLNTQKGYLL-PHPKTNVKGYAFHPDGQFCAILSRRDCKDYVQISSCKAWILL  171 (447)
T ss_pred             cceeeeECCCcceEeeeecceeEEEEEEeccceeEEe-cccccCceeEEECCCCceeeeeecccHHHHHHHHhhHHHHHH
Confidence            9999999999965 55666788999999998776544 33355678999999999988887542211             


Q ss_pred             -EEeCCCCCccEEEEEcCCCeEEEEecCCCceeeEEeccCCceeEEEEEEecCCCeeEEccccceEEEEEcCCCCeEEEe
Q 042146          168 -ILDASTPNGKFILVGTLDNTLRLWNYSTRKILKTYSGYTNSKYCISSTFSVTNGKYIVSHRDPVISVASHPAKNIIASG  246 (262)
Q Consensus       168 -~~d~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~  246 (262)
                       -+++.+-|-.-+=-+-.+..+.+||-.---.+..+.                       ..-.+..++|+|.+++|+.|
T Consensus       172 ~~f~~dT~DltgieWsPdg~~laVwd~~Leykv~aYe-----------------------~~lG~k~v~wsP~~qflavG  228 (447)
T KOG4497|consen  172 KEFKLDTIDLTGIEWSPDGNWLAVWDNVLEYKVYAYE-----------------------RGLGLKFVEWSPCNQFLAVG  228 (447)
T ss_pred             HhcCCCcccccCceECCCCcEEEEecchhhheeeeee-----------------------eccceeEEEeccccceEEee
Confidence             112222111111111222334466643222222221                       34578899999999999999


Q ss_pred             eecCCCcEEE
Q 042146          247 ALDNDRTMKI  256 (262)
Q Consensus       247 ~~d~d~~i~i  256 (262)
                      +  .|+.+|+
T Consensus       229 s--yD~~lrv  236 (447)
T KOG4497|consen  229 S--YDQMLRV  236 (447)
T ss_pred             c--cchhhhh
Confidence            9  8999886

>KOG4227 consensus WD40 repeat protein [General function prediction only]

Probab=99.54  E-value=5.5e-13  Score=100.53  Aligned_cols=104  Identities=17%  Similarity=0.301  Sum_probs=89.5

Q ss_pred             eecccCCcceEEEEEeCCCCEEEeecCCCeEEEEECCC------Ceeeeeeec-CCCCeeeEEEccCCCEEEEEeCCCeE
Q 042146           94 KTLIGHTNYVFCINFNPQSNRIVSDTFNETIRIWDIKT------GKCLKVLPA-HSDPVTAIDFNRDGTMIVTSSYDGLY  166 (262)
Q Consensus        94 ~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~------~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~~~dg~i  166 (262)
                      +.+.+|.+.|+++.|+.++++|++|+.|-.+++|++..      .+++..... |.+.|.|++|....+.+++|..+++|
T Consensus        50 KD~~~H~GCiNAlqFS~N~~~L~SGGDD~~~~~W~~de~~~~k~~KPI~~~~~~H~SNIF~L~F~~~N~~~~SG~~~~~V  129 (609)
T KOG4227|consen   50 KDVREHTGCINALQFSHNDRFLASGGDDMHGRVWNVDELMVRKTPKPIGVMEHPHRSNIFSLEFDLENRFLYSGERWGTV  129 (609)
T ss_pred             hhhhhhccccceeeeccCCeEEeecCCcceeeeechHHHHhhcCCCCceeccCccccceEEEEEccCCeeEecCCCccee
Confidence            34568999999999999999999999999999999853      355555433 55899999999988999999999999


Q ss_pred             EEEeCCC----------------------CCccEEEEEcCCCeEEEEecCCCc
Q 042146          167 RILDAST----------------------PNGKFILVGTLDNTLRLWNYSTRK  197 (262)
Q Consensus       167 ~~~d~~~----------------------~~~~~l~~~~~dg~i~i~d~~~~~  197 (262)
                      .+-|+.+                      |..+.|++.+.++.|.+||.+..+
T Consensus       130 I~HDiEt~qsi~V~~~~~~~~~VY~m~~~P~DN~~~~~t~~~~V~~~D~Rd~~  182 (609)
T KOG4227|consen  130 IKHDIETKQSIYVANENNNRGDVYHMDQHPTDNTLIVVTRAKLVSFIDNRDRQ  182 (609)
T ss_pred             EeeecccceeeeeecccCcccceeecccCCCCceEEEEecCceEEEEeccCCC
Confidence            9999877                      667899999999999999998644

>KOG3881 consensus Uncharacterized conserved protein [Function unknown]

Probab=99.53  E-value=8.7e-13  Score=99.11  Aligned_cols=101  Identities=19%  Similarity=0.332  Sum_probs=89.2

Q ss_pred             ceEEEEEeCC--CCEEEeecCCCeEEEEECCCC-eeeeeeecCCCCeeeEEEccCCCEEEEEeCCCeEEEEeCCC-----
Q 042146          102 YVFCINFNPQ--SNRIVSDTFNETIRIWDIKTG-KCLKVLPAHSDPVTAIDFNRDGTMIVTSSYDGLYRILDAST-----  173 (262)
Q Consensus       102 ~v~~~~~~~~--~~~l~~~~~dg~i~vwd~~~~-~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~d~~~-----  173 (262)
                      .++.+.|-+.  ...|++++.-+.+++||.+.+ +++..+.....+++++...|.++.+++|..-|.+..||++.     
T Consensus       204 W~tdi~Fl~g~~~~~fat~T~~hqvR~YDt~~qRRPV~~fd~~E~~is~~~l~p~gn~Iy~gn~~g~l~~FD~r~~kl~g  283 (412)
T KOG3881|consen  204 WITDIRFLEGSPNYKFATITRYHQVRLYDTRHQRRPVAQFDFLENPISSTGLTPSGNFIYTGNTKGQLAKFDLRGGKLLG  283 (412)
T ss_pred             eeccceecCCCCCceEEEEecceeEEEecCcccCcceeEeccccCcceeeeecCCCcEEEEecccchhheecccCceeec
Confidence            4567888876  788999999999999999865 67888887889999999999999999999999999999987     


Q ss_pred             ----------------CCccEEEEEcCCCeEEEEecCCCceeeEE
Q 042146          174 ----------------PNGKFILVGTLDNTLRLWNYSTRKILKTY  202 (262)
Q Consensus       174 ----------------~~~~~l~~~~~dg~i~i~d~~~~~~~~~~  202 (262)
                                      |..+++++++-|..+||+|+.+.+++...
T Consensus       284 ~~~kg~tGsirsih~hp~~~~las~GLDRyvRIhD~ktrkll~kv  328 (412)
T KOG3881|consen  284 CGLKGITGSIRSIHCHPTHPVLASCGLDRYVRIHDIKTRKLLHKV  328 (412)
T ss_pred             cccCCccCCcceEEEcCCCceEEeeccceeEEEeecccchhhhhh
Confidence                            77789999999999999999987666543

>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]

Probab=99.53  E-value=3.8e-13  Score=114.17  Aligned_cols=150  Identities=15%  Similarity=0.257  Sum_probs=121.5

Q ss_pred             CCccceecccCCcceEEEEEeCC-CCEEEeecCCCeEEEEECCCC-------eeeeeeecCCCCeeeEEEccCCCEEEEE
Q 042146           89 TATSLKTLIGHTNYVFCINFNPQ-SNRIVSDTFNETIRIWDIKTG-------KCLKVLPAHSDPVTAIDFNRDGTMIVTS  160 (262)
Q Consensus        89 ~~~~~~~~~~~~~~v~~~~~~~~-~~~l~~~~~dg~i~vwd~~~~-------~~~~~~~~~~~~v~~~~~~~~~~~l~~~  160 (262)
                      .|..+..+..|...+..++.++. +.++++|+.||+|++||++.-       +...++..-...+.++...+.++.+|.+
T Consensus      1037 ~G~lVAhL~Ehs~~v~k~a~s~~~~s~FvsgS~DGtVKvW~~~k~~~~~~s~rS~ltys~~~sr~~~vt~~~~~~~~Av~ 1116 (1431)
T KOG1240|consen 1037 RGILVAHLHEHSSAVIKLAVSSEHTSLFVSGSDDGTVKVWNLRKLEGEGGSARSELTYSPEGSRVEKVTMCGNGDQFAVS 1116 (1431)
T ss_pred             cceEeehhhhccccccceeecCCCCceEEEecCCceEEEeeehhhhcCcceeeeeEEEeccCCceEEEEeccCCCeEEEE
Confidence            35566777889999999998874 499999999999999998642       2223333346789999999999999999


Q ss_pred             eCCCeEEEEeCCC------------------------------CCc-cEEEEEcCCCeEEEEecCCCceeeEEeccCCce
Q 042146          161 SYDGLYRILDAST------------------------------PNG-KFILVGTLDNTLRLWNYSTRKILKTYSGYTNSK  209 (262)
Q Consensus       161 ~~dg~i~~~d~~~------------------------------~~~-~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~  209 (262)
                      +.||.|.+.++..                              ..+ ..++.++..+.|..||+++......++...   
T Consensus      1117 t~DG~v~~~~id~~~~~~~~~~~~ri~n~~~~g~vv~m~a~~~~~~S~~lvy~T~~~~iv~~D~r~~~~~w~lk~~~--- 1193 (1431)
T KOG1240|consen 1117 TKDGSVRVLRIDHYNVSKRVATQVRIPNLKKDGVVVSMHAFTAIVQSHVLVYATDLSRIVSWDTRMRHDAWRLKNQL--- 1193 (1431)
T ss_pred             cCCCeEEEEEccccccccceeeeeecccccCCCceEEeecccccccceeEEEEEeccceEEecchhhhhHHhhhcCc---
Confidence            9999999998765                              122 378888888999999999877776665422   


Q ss_pred             eEEEEEEecCCCeeEEccccceEEEEEcCCCCeEEEeeecCCCcEEEEeec
Q 042146          210 YCISSTFSVTNGKYIVSHRDPVISVASHPAKNIIASGALDNDRTMKIWTQE  260 (262)
Q Consensus       210 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~d~d~~i~iw~~~  260 (262)
                                       ..+.|++++.+|.+..+++|.  .-|.+-+||+.
T Consensus      1194 -----------------~hG~vTSi~idp~~~WlviGt--s~G~l~lWDLR 1225 (1431)
T KOG1240|consen 1194 -----------------RHGLVTSIVIDPWCNWLVIGT--SRGQLVLWDLR 1225 (1431)
T ss_pred             -----------------cccceeEEEecCCceEEEEec--CCceEEEEEee
Confidence                             457899999999999999999  89999999985

>KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only]

Probab=99.51  E-value=6.3e-13  Score=110.94  Aligned_cols=190  Identities=21%  Similarity=0.274  Sum_probs=136.3

Q ss_pred             CceEEEEEccCCCeEEEecCCCeEEEeecCCCCCCCCCCCCCCccc--------cCCcc---ccccceeEEEEecCCCcc
Q 042146           24 RAVSYVKFSHDGRLLTSSSAEKTLLTYSLSSISNFDSTPPSPLQKF--------TGHEQ---GISDLATIRLWDVPTATS   92 (262)
Q Consensus        24 ~~v~~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~--------~~~~~---~v~~~~~i~v~d~~~~~~   92 (262)
                      ..|....+..+...++.+..++.+.+||.................+        ....-   .-...+.|.+|+......
T Consensus        88 ~wi~g~~l~~e~k~i~l~~~~ns~~i~d~~~~~~~~~i~~~er~~l~~~~~~g~s~~~~~i~~gsv~~~iivW~~~~dn~  167 (967)
T KOG0974|consen   88 DWIFGAKLFEENKKIALVTSRNSLLIRDSKNSSVLSKIQSDERCTLYSSLIIGDSAEELYIASGSVFGEIIVWKPHEDNK  167 (967)
T ss_pred             ccccccchhhhcceEEEEEcCceEEEEecccCceehhcCCCceEEEEeEEEEeccCcEEEEEeccccccEEEEeccccCC
Confidence            3344455556677889999999999999876544332222221111        11111   112233899999875555


Q ss_pred             ceecccCCcceEEEEEeCCCCEEEeecCCCeEEEEECCCCeeee-eeecCCCCeeeEEEccCCCEEEEEeCCCeEEEEeC
Q 042146           93 LKTLIGHTNYVFCINFNPQSNRIVSDTFNETIRIWDIKTGKCLK-VLPAHSDPVTAIDFNRDGTMIVTSSYDGLYRILDA  171 (262)
Q Consensus        93 ~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~-~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~d~  171 (262)
                      ...+.+|.+.|.++.++-+|+++++.|.|.++++|++.+++... ..-+|+..+..+.|.|+  .+++++.|-+.+    
T Consensus       168 p~~l~GHeG~iF~i~~s~dg~~i~s~SdDRsiRlW~i~s~~~~~~~~fgHsaRvw~~~~~~n--~i~t~gedctcr----  241 (967)
T KOG0974|consen  168 PIRLKGHEGSIFSIVTSLDGRYIASVSDDRSIRLWPIDSREVLGCTGFGHSARVWACCFLPN--RIITVGEDCTCR----  241 (967)
T ss_pred             cceecccCCceEEEEEccCCcEEEEEecCcceeeeecccccccCcccccccceeEEEEeccc--eeEEeccceEEE----
Confidence            55688999999999999999999999999999999999987765 55689999999999987  666666655554    


Q ss_pred             CCCCccEEEEEcCCCeEEEEecCCCceeeEEeccCCceeEEEEEEecCCCeeEEccccceEEEEEcCCCCeEEEeeecCC
Q 042146          172 STPNGKFILVGTLDNTLRLWNYSTRKILKTYSGYTNSKYCISSTFSVTNGKYIVSHRDPVISVASHPAKNIIASGALDND  251 (262)
Q Consensus       172 ~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~d~d  251 (262)
                                        +|+.. ++.+..+..|                     -.+.|..++..+....++|++  .|
T Consensus       242 ------------------vW~~~-~~~l~~y~~h---------------------~g~~iw~~~~~~~~~~~vT~g--~D  279 (967)
T KOG0974|consen  242 ------------------VWGVN-GTQLEVYDEH---------------------SGKGIWKIAVPIGVIIKVTGG--ND  279 (967)
T ss_pred             ------------------EEecc-cceehhhhhh---------------------hhcceeEEEEcCCceEEEeec--cC
Confidence                              45332 3333455542                     345789999999999999999  99


Q ss_pred             CcEEEEeecc
Q 042146          252 RTMKIWTQEK  261 (262)
Q Consensus       252 ~~i~iw~~~~  261 (262)
                      +.+++|++..
T Consensus       280 s~lk~~~l~~  289 (967)
T KOG0974|consen  280 STLKLWDLNG  289 (967)
T ss_pred             cchhhhhhhc
Confidence            9999999753

>KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only]

Probab=99.51  E-value=4.4e-12  Score=93.65  Aligned_cols=222  Identities=16%  Similarity=0.281  Sum_probs=132.9

Q ss_pred             CCceeeecccc--cceecccCcCceEEEEEccCCCe-EEEecCCCeEEEeecCCCCCCCCCCCCC-CccccCCcccc-cc
Q 042146            4 DRSLESFRPYT--LTQTLNGHLRAVSYVKFSHDGRL-LTSSSAEKTLLTYSLSSISNFDSTPPSP-LQKFTGHEQGI-SD   78 (262)
Q Consensus         4 d~~i~~~~~~~--~~~~~~~h~~~v~~~~~~~~~~~-l~s~~~d~~i~iw~~~~~~~~~~~~~~~-~~~~~~~~~~v-~~   78 (262)
                      |+.+..|.-.+  -.-.++.-..++.++.|||||+. |.+..-|-.|.+|.+.+.......-++. ..-+..+..+- ..
T Consensus        70 ~~~vqvwsl~Qpew~ckIdeg~agls~~~WSPdgrhiL~tseF~lriTVWSL~t~~~~~~~~pK~~~kg~~f~~dg~f~a  149 (447)
T KOG4497|consen   70 DPKVQVWSLVQPEWYCKIDEGQAGLSSISWSPDGRHILLTSEFDLRITVWSLNTQKGYLLPHPKTNVKGYAFHPDGQFCA  149 (447)
T ss_pred             cceEEEEEeecceeEEEeccCCCcceeeeECCCcceEeeeecceeEEEEEEeccceeEEecccccCceeEEECCCCceee
Confidence            44555554332  23345566788999999999965 5566678899999987643322111111 11111111110 00


Q ss_pred             ce-------eEEEEecCCCccceecccCCcceEEEEEeCCCCEEEeecCCCeEEEEECCCCeeeeeeecCCCCeeeEEEc
Q 042146           79 LA-------TIRLWDVPTATSLKTLIGHTNYVFCINFNPQSNRIVSDTFNETIRIWDIKTGKCLKVLPAHSDPVTAIDFN  151 (262)
Q Consensus        79 ~~-------~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~  151 (262)
                      +.       .+.+..-.....++.++-..-..+.+.|+|||+.+++         ||---.-.+..+. -.-++..++|+
T Consensus       150 i~sRrDCkdyv~i~~c~~W~ll~~f~~dT~DltgieWsPdg~~laV---------wd~~Leykv~aYe-~~lG~k~v~ws  219 (447)
T KOG4497|consen  150 ILSRRDCKDYVQISSCKAWILLKEFKLDTIDLTGIEWSPDGNWLAV---------WDNVLEYKVYAYE-RGLGLKFVEWS  219 (447)
T ss_pred             eeecccHHHHHHHHhhHHHHHHHhcCCCcccccCceECCCCcEEEE---------ecchhhheeeeee-eccceeEEEec
Confidence            00       1111111122233334444455678889998876654         5422111122221 23568899999


Q ss_pred             cCCCEEEEEeCCCeEEEEeCCC----------------------------------------------------------
Q 042146          152 RDGTMIVTSSYDGLYRILDAST----------------------------------------------------------  173 (262)
Q Consensus       152 ~~~~~l~~~~~dg~i~~~d~~~----------------------------------------------------------  173 (262)
                      |.++.|++|+.|+.+++.+--+                                                          
T Consensus       220 P~~qflavGsyD~~lrvlnh~tWk~f~eflhl~s~~dp~~~~~~ke~~~~~ql~~~cLsf~p~~~~a~~~~~se~~YE~~  299 (447)
T KOG4497|consen  220 PCNQFLAVGSYDQMLRVLNHFTWKPFGEFLHLCSYHDPTLHLLEKETFSIVQLLHHCLSFTPTDLEAHIWEESETIYEQQ  299 (447)
T ss_pred             cccceEEeeccchhhhhhceeeeeehhhhccchhccCchhhhhhhhhcchhhhcccccccCCCccccCccccchhhhhhh
Confidence            9999999999999998876332                                                          


Q ss_pred             ----------------------------CCccEEEEEcCC--CeEEEEecCCCceeeEEeccCCceeEEEEEEecCCCee
Q 042146          174 ----------------------------PNGKFILVGTLD--NTLRLWNYSTRKILKTYSGYTNSKYCISSTFSVTNGKY  223 (262)
Q Consensus       174 ----------------------------~~~~~l~~~~~d--g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  223 (262)
                                                  +|..|+++-...  ..+-+||++..++-..+.                    
T Consensus       300 ~~pv~~~~lkp~tD~pnPk~g~g~lafs~Ds~y~aTrnd~~PnalW~Wdlq~l~l~avLi--------------------  359 (447)
T KOG4497|consen  300 MTPVKVHKLKPPTDFPNPKCGAGKLAFSCDSTYAATRNDKYPNALWLWDLQNLKLHAVLI--------------------  359 (447)
T ss_pred             hcceeeecccCCCCCCCcccccceeeecCCceEEeeecCCCCceEEEEechhhhhhhhhh--------------------
Confidence                                        355566555433  467778877665554443                    


Q ss_pred             EEccccceEEEEEcCCCCeEEEeeecCCCcEEEEeec
Q 042146          224 IVSHRDPVISVASHPAKNIIASGALDNDRTMKIWTQE  260 (262)
Q Consensus       224 ~~~~~~~v~~~~~~p~~~~l~~~~~d~d~~i~iw~~~  260 (262)
                         ...+|....|+|....|+.+.  ....+++|.+.
T Consensus       360 ---Qk~piraf~WdP~~prL~vct--g~srLY~W~ps  391 (447)
T KOG4497|consen  360 ---QKHPIRAFEWDPGRPRLVVCT--GKSRLYFWAPS  391 (447)
T ss_pred             ---hccceeEEEeCCCCceEEEEc--CCceEEEEcCC
Confidence               567899999999999888877  56778888764

>KOG2139 consensus WD40 repeat protein [General function prediction only]

Probab=99.50  E-value=7.7e-11  Score=88.20  Aligned_cols=163  Identities=14%  Similarity=0.198  Sum_probs=104.8

Q ss_pred             CCCceeeecc-cccceecc-cCcCceEEEEEccCC-CeEEEecCCCeEEEeecCCCCCCCC----CCCC--CCccccCCc
Q 042146            3 SDRSLESFRP-YTLTQTLN-GHLRAVSYVKFSHDG-RLLTSSSAEKTLLTYSLSSISNFDS----TPPS--PLQKFTGHE   73 (262)
Q Consensus         3 ~d~~i~~~~~-~~~~~~~~-~h~~~v~~~~~~~~~-~~l~s~~~d~~i~iw~~~~~~~~~~----~~~~--~~~~~~~~~   73 (262)
                      .|.++++|+. .+....++ ..+..|+|++|-|.+ ..|+.|+. +-|.+|..+.......    ....  .+...++| 
T Consensus       118 nddvVriy~ksst~pt~Lks~sQrnvtclawRPlsaselavgCr-~gIciW~~s~tln~~r~~~~~s~~~~qvl~~pgh-  195 (445)
T KOG2139|consen  118 NDDVVRIYDKSSTCPTKLKSVSQRNVTCLAWRPLSASELAVGCR-AGICIWSDSRTLNANRNIRMMSTHHLQVLQDPGH-  195 (445)
T ss_pred             cCcEEEEeccCCCCCceecchhhcceeEEEeccCCcceeeeeec-ceeEEEEcCcccccccccccccccchhheeCCCC-
Confidence            4677888863 34333443 235679999999964 46777765 6689998765322111    0111  11112222 


Q ss_pred             cccccce----------------eEEEEecCCCccceecccCCcceEEEEEeCCCCEEEeecCCCeEEEEECCCCeeeee
Q 042146           74 QGISDLA----------------TIRLWDVPTATSLKTLIGHTNYVFCINFNPQSNRIVSDTFNETIRIWDIKTGKCLKV  137 (262)
Q Consensus        74 ~~v~~~~----------------~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~  137 (262)
                      ..|..+.                .|.+||..++..+.......+.++-+.|+||+.+|+++.-|+..++|+.........
T Consensus       196 ~pVtsmqwn~dgt~l~tAS~gsssi~iWdpdtg~~~pL~~~glgg~slLkwSPdgd~lfaAt~davfrlw~e~q~wt~er  275 (445)
T KOG2139|consen  196 NPVTSMQWNEDGTILVTASFGSSSIMIWDPDTGQKIPLIPKGLGGFSLLKWSPDGDVLFAATCDAVFRLWQENQSWTKER  275 (445)
T ss_pred             ceeeEEEEcCCCCEEeecccCcceEEEEcCCCCCcccccccCCCceeeEEEcCCCCEEEEecccceeeeehhcccceecc
Confidence            2222222                899999998877655544567799999999999999999999999996543322222


Q ss_pred             eecCCCCeeeEEEccCCCEE-EEEeCCCeEE
Q 042146          138 LPAHSDPVTAIDFNRDGTMI-VTSSYDGLYR  167 (262)
Q Consensus       138 ~~~~~~~v~~~~~~~~~~~l-~~~~~dg~i~  167 (262)
                      .....+.|...+|+|.|+.| ++++..-.++
T Consensus       276 w~lgsgrvqtacWspcGsfLLf~~sgsp~ly  306 (445)
T KOG2139|consen  276 WILGSGRVQTACWSPCGSFLLFACSGSPRLY  306 (445)
T ss_pred             eeccCCceeeeeecCCCCEEEEEEcCCceEE
Confidence            22345689999999999854 4555544444

>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB

Probab=99.49  E-value=2.9e-11  Score=98.05  Aligned_cols=183  Identities=18%  Similarity=0.172  Sum_probs=116.8

Q ss_pred             ceeeecc-cccceecccCcCceEEEEEccCCCeEEEecCCC-eEEEeecCCCCCCCCCCCCCCccccCCccccccceeEE
Q 042146            6 SLESFRP-YTLTQTLNGHLRAVSYVKFSHDGRLLTSSSAEK-TLLTYSLSSISNFDSTPPSPLQKFTGHEQGISDLATIR   83 (262)
Q Consensus         6 ~i~~~~~-~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~-~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~i~   83 (262)
                      .|+.++. ....+.+..+...+...+|+|+|++|+.++.++ .-                                 .|+
T Consensus       171 ~l~~~d~~g~~~~~l~~~~~~~~~p~~Spdg~~la~~~~~~~~~---------------------------------~i~  217 (417)
T TIGR02800       171 ELQVADYDGANPQTITRSREPILSPAWSPDGQKLAYVSFESGKP---------------------------------EIY  217 (417)
T ss_pred             eEEEEcCCCCCCEEeecCCCceecccCCCCCCEEEEEEcCCCCc---------------------------------EEE
Confidence            3444442 233455556777889999999999998876432 10                                 244


Q ss_pred             EEecCCCccceecccCCcceEEEEEeCCCCEEE-eecCCC--eEEEEECCCCeeeeeeecCCCCeeeEEEccCCCEEEEE
Q 042146           84 LWDVPTATSLKTLIGHTNYVFCINFNPQSNRIV-SDTFNE--TIRIWDIKTGKCLKVLPAHSDPVTAIDFNRDGTMIVTS  160 (262)
Q Consensus        84 v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~-~~~~dg--~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~  160 (262)
                      +||+.+++... +..+...+.+++|+|+++.|+ +.+.++  .|++||+.+++.. .+..+........|+|+++.|+..
T Consensus       218 v~d~~~g~~~~-~~~~~~~~~~~~~spDg~~l~~~~~~~~~~~i~~~d~~~~~~~-~l~~~~~~~~~~~~s~dg~~l~~~  295 (417)
T TIGR02800       218 VQDLATGQREK-VASFPGMNGAPAFSPDGSKLAVSLSKDGNPDIYVMDLDGKQLT-RLTNGPGIDTEPSWSPDGKSIAFT  295 (417)
T ss_pred             EEECCCCCEEE-eecCCCCccceEECCCCCEEEEEECCCCCccEEEEECCCCCEE-ECCCCCCCCCCEEECCCCCEEEEE
Confidence            55555543322 223445566789999998775 444444  5899999877543 344455555678999999988766


Q ss_pred             eC-CC--eEEEEeCCC-------------------CCccEEEEEcCCC---eEEEEecCCCceeeEEeccCCceeEEEEE
Q 042146          161 SY-DG--LYRILDAST-------------------PNGKFILVGTLDN---TLRLWNYSTRKILKTYSGYTNSKYCISST  215 (262)
Q Consensus       161 ~~-dg--~i~~~d~~~-------------------~~~~~l~~~~~dg---~i~i~d~~~~~~~~~~~~~~~~~~~~~~~  215 (262)
                      +. ++  .|.++|+..                   +++++++.++.++   .|.+||+.++... .+..           
T Consensus       296 s~~~g~~~iy~~d~~~~~~~~l~~~~~~~~~~~~spdg~~i~~~~~~~~~~~i~~~d~~~~~~~-~l~~-----------  363 (417)
T TIGR02800       296 SDRGGSPQIYMMDADGGEVRRLTFRGGYNASPSWSPDGDLIAFVHREGGGFNIAVMDLDGGGER-VLTD-----------  363 (417)
T ss_pred             ECCCCCceEEEEECCCCCEEEeecCCCCccCeEECCCCCEEEEEEccCCceEEEEEeCCCCCeE-EccC-----------
Confidence            54 33  577777654                   6778887777665   7888888765432 2221           


Q ss_pred             EecCCCeeEEccccceEEEEEcCCCCeEEEee
Q 042146          216 FSVTNGKYIVSHRDPVISVASHPAKNIIASGA  247 (262)
Q Consensus       216 ~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~  247 (262)
                                  ........|+|+++.|+..+
T Consensus       364 ------------~~~~~~p~~spdg~~l~~~~  383 (417)
T TIGR02800       364 ------------TGLDESPSFAPNGRMILYAT  383 (417)
T ss_pred             ------------CCCCCCceECCCCCEEEEEE
Confidence                        11223457999999888877

The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.

>KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only]

Probab=99.47  E-value=1.3e-11  Score=103.25  Aligned_cols=131  Identities=25%  Similarity=0.381  Sum_probs=106.3

Q ss_pred             Cceeeecccc--cceecccCcCceEEEEEccCCCeEEEecCCCeEEEeecCCCCCCCCCCCCCCccccCCccccccceeE
Q 042146            5 RSLESFRPYT--LTQTLNGHLRAVSYVKFSHDGRLLTSSSAEKTLLTYSLSSISNFDSTPPSPLQKFTGHEQGISDLATI   82 (262)
Q Consensus         5 ~~i~~~~~~~--~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~i   82 (262)
                      +.|..|++..  .-..+.+|.+.|.++.++.||+++++.|+|+++++|++++                            
T Consensus       155 ~~iivW~~~~dn~p~~l~GHeG~iF~i~~s~dg~~i~s~SdDRsiRlW~i~s----------------------------  206 (967)
T KOG0974|consen  155 GEIIVWKPHEDNKPIRLKGHEGSIFSIVTSLDGRYIASVSDDRSIRLWPIDS----------------------------  206 (967)
T ss_pred             ccEEEEeccccCCcceecccCCceEEEEEccCCcEEEEEecCcceeeeeccc----------------------------
Confidence            3455555331  2225789999999999999999999999999999997654                            


Q ss_pred             EEEecCCCccc-eecccCCcceEEEEEeCCCCEEEeecCCCeEEEEECCCCeeeeeeecCC-CCeeeEEEccCCCEEEEE
Q 042146           83 RLWDVPTATSL-KTLIGHTNYVFCINFNPQSNRIVSDTFNETIRIWDIKTGKCLKVLPAHS-DPVTAIDFNRDGTMIVTS  160 (262)
Q Consensus        83 ~v~d~~~~~~~-~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~-~~v~~~~~~~~~~~l~~~  160 (262)
                             .+.. ...-+|.+.|..+.++|+  .+++++.|.+.++|+.+ +..+..+..|. ..+..++..++....+++
T Consensus       207 -------~~~~~~~~fgHsaRvw~~~~~~n--~i~t~gedctcrvW~~~-~~~l~~y~~h~g~~iw~~~~~~~~~~~vT~  276 (967)
T KOG0974|consen  207 -------REVLGCTGFGHSARVWACCFLPN--RIITVGEDCTCRVWGVN-GTQLEVYDEHSGKGIWKIAVPIGVIIKVTG  276 (967)
T ss_pred             -------ccccCcccccccceeEEEEeccc--eeEEeccceEEEEEecc-cceehhhhhhhhcceeEEEEcCCceEEEee
Confidence                   2222 245679999999999988  89999999999999755 45555777775 479999999999999999


Q ss_pred             eCCCeEEEEeCCC
Q 042146          161 SYDGLYRILDAST  173 (262)
Q Consensus       161 ~~dg~i~~~d~~~  173 (262)
                      +.|+.+++||+..
T Consensus       277 g~Ds~lk~~~l~~  289 (967)
T KOG0974|consen  277 GNDSTLKLWDLNG  289 (967)
T ss_pred             ccCcchhhhhhhc
Confidence            9999999999765

>KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only]

Probab=99.47  E-value=2.3e-14  Score=116.99  Aligned_cols=118  Identities=28%  Similarity=0.611  Sum_probs=103.6

Q ss_pred             ceecccCCcceEEEEEeCCCCEEEeecCCCeEEEEECCCCeeeeeeecCCCCeeeEEEccCCCEEEEEeCCCeEEEEeCC
Q 042146           93 LKTLIGHTNYVFCINFNPQSNRIVSDTFNETIRIWDIKTGKCLKVLPAHSDPVTAIDFNRDGTMIVTSSYDGLYRILDAS  172 (262)
Q Consensus        93 ~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~d~~  172 (262)
                      ++.+.+|...|.|..|...|.++++|+.|..++||..+++.++..+.+|.+.|+.++.+.+..+                
T Consensus       183 ikrLlgH~naVyca~fDrtg~~Iitgsdd~lvKiwS~et~~~lAs~rGhs~ditdlavs~~n~~----------------  246 (1113)
T KOG0644|consen  183 IKRLLGHRNAVYCAIFDRTGRYIITGSDDRLVKIWSMETARCLASCRGHSGDITDLAVSSNNTM----------------  246 (1113)
T ss_pred             HHHHHhhhhheeeeeeccccceEeecCccceeeeeeccchhhhccCCCCccccchhccchhhhh----------------
Confidence            3456789999999999999999999999999999999999999999999999999998865444                


Q ss_pred             CCCccEEEEEcCCCeEEEEecCCCceeeEEeccCCceeEEEEEEecCCCeeEEccccceEEEEEcCCCCeEEEeeecCCC
Q 042146          173 TPNGKFILVGTLDNTLRLWNYSTRKILKTYSGYTNSKYCISSTFSVTNGKYIVSHRDPVISVASHPAKNIIASGALDNDR  252 (262)
Q Consensus       173 ~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~d~d~  252 (262)
                            +++++.|..|++|.+.++.++..+.+                      |.+.|++++|+|-.    +.+  .||
T Consensus       247 ------iaaaS~D~vIrvWrl~~~~pvsvLrg----------------------htgavtaiafsP~~----sss--~dg  292 (1113)
T KOG0644|consen  247 ------IAAASNDKVIRVWRLPDGAPVSVLRG----------------------HTGAVTAIAFSPRA----SSS--DDG  292 (1113)
T ss_pred             ------hhhcccCceEEEEecCCCchHHHHhc----------------------cccceeeeccCccc----cCC--CCC
Confidence                  45556677889999999999999988                      99999999999966    555  799


Q ss_pred             cEEEEeec
Q 042146          253 TMKIWTQE  260 (262)
Q Consensus       253 ~i~iw~~~  260 (262)
                      ++++||..
T Consensus       293 t~~~wd~r  300 (1113)
T KOG0644|consen  293 TCRIWDAR  300 (1113)
T ss_pred             ceEecccc
Confidence            99999975

>PRK05137 tolB translocation protein TolB; Provisional

Probab=99.45  E-value=3.2e-11  Score=98.00  Aligned_cols=155  Identities=17%  Similarity=0.232  Sum_probs=107.6

Q ss_pred             eEEEEecCCCccceecccCCcceEEEEEeCCCCEEEeecC---CCeEEEEECCCCeeeeeeecCCCCeeeEEEccCCCEE
Q 042146           81 TIRLWDVPTATSLKTLIGHTNYVFCINFNPQSNRIVSDTF---NETIRIWDIKTGKCLKVLPAHSDPVTAIDFNRDGTMI  157 (262)
Q Consensus        81 ~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~---dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l  157 (262)
                      .|.++|.. +.....+..+...+.+.+|+|||+.|+..+.   +..|.+||+.+++.. .+..+.+.+...+|+|||+.|
T Consensus       183 ~l~~~d~d-g~~~~~lt~~~~~v~~p~wSpDG~~lay~s~~~g~~~i~~~dl~~g~~~-~l~~~~g~~~~~~~SPDG~~l  260 (435)
T PRK05137        183 RLAIMDQD-GANVRYLTDGSSLVLTPRFSPNRQEITYMSYANGRPRVYLLDLETGQRE-LVGNFPGMTFAPRFSPDGRKV  260 (435)
T ss_pred             EEEEECCC-CCCcEEEecCCCCeEeeEECCCCCEEEEEEecCCCCEEEEEECCCCcEE-EeecCCCcccCcEECCCCCEE
Confidence            68888874 4445556667888999999999998877653   468999999888653 344566677889999999876


Q ss_pred             E-EEeCCCe--EEEEeCCC-------------------CCccEEEEEcC-CC--eEEEEecCCCceeeEEeccCCceeEE
Q 042146          158 V-TSSYDGL--YRILDAST-------------------PNGKFILVGTL-DN--TLRLWNYSTRKILKTYSGYTNSKYCI  212 (262)
Q Consensus       158 ~-~~~~dg~--i~~~d~~~-------------------~~~~~l~~~~~-dg--~i~i~d~~~~~~~~~~~~~~~~~~~~  212 (262)
                      + +.+.++.  |.+||+..                   |+++.|+..+. +|  .|+++|+..++.. .+..        
T Consensus       261 a~~~~~~g~~~Iy~~d~~~~~~~~Lt~~~~~~~~~~~spDG~~i~f~s~~~g~~~Iy~~d~~g~~~~-~lt~--------  331 (435)
T PRK05137        261 VMSLSQGGNTDIYTMDLRSGTTTRLTDSPAIDTSPSYSPDGSQIVFESDRSGSPQLYVMNADGSNPR-RISF--------  331 (435)
T ss_pred             EEEEecCCCceEEEEECCCCceEEccCCCCccCceeEcCCCCEEEEEECCCCCCeEEEEECCCCCeE-Eeec--------
Confidence            5 5555555  77778654                   77887776653 33  5777887655443 3322        


Q ss_pred             EEEEecCCCeeEEccccceEEEEEcCCCCeEEEeeecC-CCcEEEEeec
Q 042146          213 SSTFSVTNGKYIVSHRDPVISVASHPAKNIIASGALDN-DRTMKIWTQE  260 (262)
Q Consensus       213 ~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~d~-d~~i~iw~~~  260 (262)
                                    +...+....|+|+|+.|+..+.+. +..|.+|++.
T Consensus       332 --------------~~~~~~~~~~SpdG~~ia~~~~~~~~~~i~~~d~~  366 (435)
T PRK05137        332 --------------GGGRYSTPVWSPRGDLIAFTKQGGGQFSIGVMKPD  366 (435)
T ss_pred             --------------CCCcccCeEECCCCCEEEEEEcCCCceEEEEEECC
Confidence                          333456678999999998776211 1356777763

>PRK03629 tolB translocation protein TolB; Provisional

Probab=99.43  E-value=4.1e-11  Score=96.96  Aligned_cols=158  Identities=18%  Similarity=0.191  Sum_probs=104.2

Q ss_pred             cCceEEEEEccCCCeEEEe-cCCCeEEEeecCCCCCCCCCCCCCCccccCCccccccceeEEEEecCCCccceecccCCc
Q 042146           23 LRAVSYVKFSHDGRLLTSS-SAEKTLLTYSLSSISNFDSTPPSPLQKFTGHEQGISDLATIRLWDVPTATSLKTLIGHTN  101 (262)
Q Consensus        23 ~~~v~~~~~~~~~~~l~s~-~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~i~v~d~~~~~~~~~~~~~~~  101 (262)
                      .+.+...+|+|||+.|+.. +.+|..                                 .|++||+.+++... +..+..
T Consensus       242 ~~~~~~~~~SPDG~~La~~~~~~g~~---------------------------------~I~~~d~~tg~~~~-lt~~~~  287 (429)
T PRK03629        242 PRHNGAPAFSPDGSKLAFALSKTGSL---------------------------------NLYVMDLASGQIRQ-VTDGRS  287 (429)
T ss_pred             CCCcCCeEECCCCCEEEEEEcCCCCc---------------------------------EEEEEECCCCCEEE-ccCCCC
Confidence            3445568999999988765 444432                                 23455665554332 333344


Q ss_pred             ceEEEEEeCCCCEEEeecCC-C--eEEEEECCCCeeeeeeecCCCCeeeEEEccCCCEEEEEeCC---CeEEEEeCCC--
Q 042146          102 YVFCINFNPQSNRIVSDTFN-E--TIRIWDIKTGKCLKVLPAHSDPVTAIDFNRDGTMIVTSSYD---GLYRILDAST--  173 (262)
Q Consensus       102 ~v~~~~~~~~~~~l~~~~~d-g--~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d---g~i~~~d~~~--  173 (262)
                      .+....|+|+|+.|+..+.+ +  .|.++|+.+++. ..+..+........|+|+|+.++..+.+   ..|.+||+..  
T Consensus       288 ~~~~~~wSPDG~~I~f~s~~~g~~~Iy~~d~~~g~~-~~lt~~~~~~~~~~~SpDG~~Ia~~~~~~g~~~I~~~dl~~g~  366 (429)
T PRK03629        288 NNTEPTWFPDSQNLAYTSDQAGRPQVYKVNINGGAP-QRITWEGSQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATGG  366 (429)
T ss_pred             CcCceEECCCCCEEEEEeCCCCCceEEEEECCCCCe-EEeecCCCCccCEEECCCCCEEEEEEccCCCceEEEEECCCCC
Confidence            57788999999988766654 3  455567766654 3333344456788999999988876643   3588888764  


Q ss_pred             ----------------CCccEEEEEcCCCe---EEEEecCCCceeeEEeccCCceeEEEEEEecCCCeeEEccccceEEE
Q 042146          174 ----------------PNGKFILVGTLDNT---LRLWNYSTRKILKTYSGYTNSKYCISSTFSVTNGKYIVSHRDPVISV  234 (262)
Q Consensus       174 ----------------~~~~~l~~~~~dg~---i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~  234 (262)
                                      ||+++|+.++.++.   +.++++ +|+....+..                      |.+.+...
T Consensus       367 ~~~Lt~~~~~~~p~~SpDG~~i~~~s~~~~~~~l~~~~~-~G~~~~~l~~----------------------~~~~~~~p  423 (429)
T PRK03629        367 VQVLTDTFLDETPSIAPNGTMVIYSSSQGMGSVLNLVST-DGRFKARLPA----------------------TDGQVKFP  423 (429)
T ss_pred             eEEeCCCCCCCCceECCCCCEEEEEEcCCCceEEEEEEC-CCCCeEECcc----------------------CCCCcCCc
Confidence                            78888888877653   666676 3555566655                      66677788


Q ss_pred             EEcC
Q 042146          235 ASHP  238 (262)
Q Consensus       235 ~~~p  238 (262)
                      +|+|
T Consensus       424 ~Wsp  427 (429)
T PRK03629        424 AWSP  427 (429)
T ss_pred             ccCC
Confidence            8887

>PRK00178 tolB translocation protein TolB; Provisional

Probab=99.43  E-value=1.3e-10  Score=94.47  Aligned_cols=184  Identities=12%  Similarity=0.133  Sum_probs=113.4

Q ss_pred             ceecccCcCceEEEEEccCCCeEEEecCCC-eEEEeecCCCCCCCCCCCCCCccccCCccccccceeEEEEecCCCccce
Q 042146           16 TQTLNGHLRAVSYVKFSHDGRLLTSSSAEK-TLLTYSLSSISNFDSTPPSPLQKFTGHEQGISDLATIRLWDVPTATSLK   94 (262)
Q Consensus        16 ~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~-~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~i~v~d~~~~~~~~   94 (262)
                      .+.+..+...+....|+|||+.|+..+.++ .-                                 .|.+|++.+++...
T Consensus       191 ~~~l~~~~~~~~~p~wSpDG~~la~~s~~~~~~---------------------------------~l~~~~l~~g~~~~  237 (430)
T PRK00178        191 AVTLLQSREPILSPRWSPDGKRIAYVSFEQKRP---------------------------------RIFVQNLDTGRREQ  237 (430)
T ss_pred             ceEEecCCCceeeeeECCCCCEEEEEEcCCCCC---------------------------------EEEEEECCCCCEEE
Confidence            344556777899999999999988765432 11                                 24455555554322


Q ss_pred             ecccCCcceEEEEEeCCCCEEE-eecCCC--eEEEEECCCCeeeeeeecCCCCeeeEEEccCCCEEEEEeC-CC--eEEE
Q 042146           95 TLIGHTNYVFCINFNPQSNRIV-SDTFNE--TIRIWDIKTGKCLKVLPAHSDPVTAIDFNRDGTMIVTSSY-DG--LYRI  168 (262)
Q Consensus        95 ~~~~~~~~v~~~~~~~~~~~l~-~~~~dg--~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-dg--~i~~  168 (262)
                       +....+.+....|+|+|+.|+ +.+.+|  .|++||+.+++.. .+..+........|+|+|+.++..+. +|  .|.+
T Consensus       238 -l~~~~g~~~~~~~SpDG~~la~~~~~~g~~~Iy~~d~~~~~~~-~lt~~~~~~~~~~~spDg~~i~f~s~~~g~~~iy~  315 (430)
T PRK00178        238 -ITNFEGLNGAPAWSPDGSKLAFVLSKDGNPEIYVMDLASRQLS-RVTNHPAIDTEPFWGKDGRTLYFTSDRGGKPQIYK  315 (430)
T ss_pred             -ccCCCCCcCCeEECCCCCEEEEEEccCCCceEEEEECCCCCeE-EcccCCCCcCCeEECCCCCEEEEEECCCCCceEEE
Confidence             222233455689999999876 444454  6888999877643 44445556677899999997766553 33  5666


Q ss_pred             EeCCC-------------------CCccEEEEEcCC-C--eEEEEecCCCceeeEEeccCCceeEEEEEEecCCCeeEEc
Q 042146          169 LDAST-------------------PNGKFILVGTLD-N--TLRLWNYSTRKILKTYSGYTNSKYCISSTFSVTNGKYIVS  226 (262)
Q Consensus       169 ~d~~~-------------------~~~~~l~~~~~d-g--~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  226 (262)
                      +|+..                   |++++++..+.+ +  .|.++|+.+++.. .+..                      
T Consensus       316 ~d~~~g~~~~lt~~~~~~~~~~~Spdg~~i~~~~~~~~~~~l~~~dl~tg~~~-~lt~----------------------  372 (430)
T PRK00178        316 VNVNGGRAERVTFVGNYNARPRLSADGKTLVMVHRQDGNFHVAAQDLQRGSVR-ILTD----------------------  372 (430)
T ss_pred             EECCCCCEEEeecCCCCccceEECCCCCEEEEEEccCCceEEEEEECCCCCEE-EccC----------------------
Confidence            67543                   566766665432 2  4667777766532 2211                      


Q ss_pred             cccceEEEEEcCCCCeEEEeeecCCCc--EEEEee
Q 042146          227 HRDPVISVASHPAKNIIASGALDNDRT--MKIWTQ  259 (262)
Q Consensus       227 ~~~~v~~~~~~p~~~~l~~~~~d~d~~--i~iw~~  259 (262)
                       ........|+|+|+.++.++. .++.  |.+.++
T Consensus       373 -~~~~~~p~~spdg~~i~~~~~-~~g~~~l~~~~~  405 (430)
T PRK00178        373 -TSLDESPSVAPNGTMLIYATR-QQGRGVLMLVSI  405 (430)
T ss_pred             -CCCCCCceECCCCCEEEEEEe-cCCceEEEEEEC
Confidence             111124579999998887763 2333  444444

>KOG4714 consensus Nucleoporin [Nuclear structure]

Probab=99.43  E-value=9.6e-13  Score=94.00  Aligned_cols=157  Identities=17%  Similarity=0.161  Sum_probs=105.9

Q ss_pred             eecccCcCceEEEEEccCCCeEEEecCCCeEEEeecCCCCCCCCC----CCC-CCcc--------ccCCccccccceeEE
Q 042146           17 QTLNGHLRAVSYVKFSHDGRLLTSSSAEKTLLTYSLSSISNFDST----PPS-PLQK--------FTGHEQGISDLATIR   83 (262)
Q Consensus        17 ~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~----~~~-~~~~--------~~~~~~~v~~~~~i~   83 (262)
                      +.+..|+++-.+-+.+-.++.++++..||.+.+.+.+........    ... ...+        ..+....+......+
T Consensus        83 ~~~a~~sep~p~~~~s~~~t~V~~~~~dg~~~v~s~~~~~~~~~~i~~~~~~~as~~~~~~~~~i~s~~~g~~n~~d~~~  162 (319)
T KOG4714|consen   83 KVLAKNSEIDPNDACTMTDNRVCIGYADGSLAVFSTDKDLALMSRIPSIHSGSASRKICRHGNSILSGGCGNWNAQDNFY  162 (319)
T ss_pred             eeeeccCCCCCcccccccCCceEecCCCceEEEEechHHHhhhhhcccccccccccceeecccEEecCCcceEeecccee
Confidence            344445555445555556778999999999999998762211110    000 0011        112223334444677


Q ss_pred             EEecCCCccceecccCCcceEEEEEeC-CCCEEEeecCCCeEEEEECCCCe-eeeeeecCCCCeeeEEEcc-CCCEEEEE
Q 042146           84 LWDVPTATSLKTLIGHTNYVFCINFNP-QSNRIVSDTFNETIRIWDIKTGK-CLKVLPAHSDPVTAIDFNR-DGTMIVTS  160 (262)
Q Consensus        84 v~d~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~dg~i~vwd~~~~~-~~~~~~~~~~~v~~~~~~~-~~~~l~~~  160 (262)
                      .|+++..+.+..-+.-...|.+++-+| ...++++|+.||.+-+||.+... +...+..|+.+++.+-|+| ++..|+++
T Consensus       163 a~~~~p~~t~~~~~~~~~~v~~l~~hp~qq~~v~cgt~dg~~~l~d~rn~~~p~S~l~ahk~~i~eV~FHpk~p~~Lft~  242 (319)
T KOG4714|consen  163 ANTLDPIKTLIPSKKALDAVTALCSHPAQQHLVCCGTDDGIVGLWDARNVAMPVSLLKAHKAEIWEVHFHPKNPEHLFTC  242 (319)
T ss_pred             eecccccccccccccccccchhhhCCcccccEEEEecCCCeEEEEEcccccchHHHHHHhhhhhhheeccCCCchheeEe
Confidence            777765443322222234499999999 56678899999999999998764 3455688999999999999 78899999


Q ss_pred             eCCCeEEEEeCCC
Q 042146          161 SYDGLYRILDAST  173 (262)
Q Consensus       161 ~~dg~i~~~d~~~  173 (262)
                      +.||.+-.||...
T Consensus       243 sedGslw~wdas~  255 (319)
T KOG4714|consen  243 SEDGSLWHWDAST  255 (319)
T ss_pred             cCCCcEEEEcCCC
Confidence            9999999999774

>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis]

Probab=99.43  E-value=2.4e-10  Score=90.03  Aligned_cols=97  Identities=16%  Similarity=0.392  Sum_probs=78.0

Q ss_pred             CCCCeeeEEEccCCCEEEEE--eCCCeEEEEeCCC-----------------CCccEEEEEcC---CCeEEEEecCCCce
Q 042146          141 HSDPVTAIDFNRDGTMIVTS--SYDGLYRILDAST-----------------PNGKFILVGTL---DNTLRLWNYSTRKI  198 (262)
Q Consensus       141 ~~~~v~~~~~~~~~~~l~~~--~~dg~i~~~d~~~-----------------~~~~~l~~~~~---dg~i~i~d~~~~~~  198 (262)
                      ..++|.++.|+|+++.|+++  -.-..+.+||++.                 |.|++++.++-   .|.|.|||+.+.++
T Consensus       269 k~GPVhdv~W~~s~~EF~VvyGfMPAkvtifnlr~~~v~df~egpRN~~~fnp~g~ii~lAGFGNL~G~mEvwDv~n~K~  348 (566)
T KOG2315|consen  269 KEGPVHDVTWSPSGREFAVVYGFMPAKVTIFNLRGKPVFDFPEGPRNTAFFNPHGNIILLAGFGNLPGDMEVWDVPNRKL  348 (566)
T ss_pred             CCCCceEEEECCCCCEEEEEEecccceEEEEcCCCCEeEeCCCCCccceEECCCCCEEEEeecCCCCCceEEEeccchhh
Confidence            47899999999999877665  4567889999886                 78898888764   48999999999988


Q ss_pred             eeEEeccCCceeEEEEEEecCCCeeEEccccceEEEEEcCCCCeEEEeeec----CCCcEEEEeecc
Q 042146          199 LKTYSGYTNSKYCISSTFSVTNGKYIVSHRDPVISVASHPAKNIIASGALD----NDRTMKIWTQEK  261 (262)
Q Consensus       199 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~d----~d~~i~iw~~~~  261 (262)
                      +..+..                        ..-+-+.|+|||.+++|+.+-    -|+.++||++..
T Consensus       349 i~~~~a------------------------~~tt~~eW~PdGe~flTATTaPRlrvdNg~KiwhytG  391 (566)
T KOG2315|consen  349 IAKFKA------------------------ANTTVFEWSPDGEYFLTATTAPRLRVDNGIKIWHYTG  391 (566)
T ss_pred             cccccc------------------------CCceEEEEcCCCcEEEEEeccccEEecCCeEEEEecC
Confidence            888864                        234567899999999999731    278899999753

>KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism]

Probab=99.43  E-value=1.1e-11  Score=90.17  Aligned_cols=115  Identities=19%  Similarity=0.244  Sum_probs=87.9

Q ss_pred             eEEEEEccCCCeEEEecCCCeEEEeecCCCCCCCCCCCCCCccccCCccccccceeEEEEecCCCccceecccCCcceEE
Q 042146           26 VSYVKFSHDGRLLTSSSAEKTLLTYSLSSISNFDSTPPSPLQKFTGHEQGISDLATIRLWDVPTATSLKTLIGHTNYVFC  105 (262)
Q Consensus        26 v~~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~i~v~d~~~~~~~~~~~~~~~~v~~  105 (262)
                      -.++.|++.+..++++-.+|.+.+-+...                                 ..-+.++.++.|.-++..
T Consensus       124 ~lslD~~~~~~~i~vs~s~G~~~~v~~t~---------------------------------~~le~vq~wk~He~E~Wt  170 (339)
T KOG0280|consen  124 ALSLDISTSGTKIFVSDSRGSISGVYETE---------------------------------MVLEKVQTWKVHEFEAWT  170 (339)
T ss_pred             eeEEEeeccCceEEEEcCCCcEEEEecce---------------------------------eeeeecccccccceeeee
Confidence            45677777777788877777766332110                                 011334467889999999


Q ss_pred             EEEeC-CCCEEEeecCCCeEEEEECC-CCeeeee-eecCCCCeeeEEEcc-CCCEEEEEeCCCeEEEEeCCC
Q 042146          106 INFNP-QSNRIVSDTFNETIRIWDIK-TGKCLKV-LPAHSDPVTAIDFNR-DGTMIVTSSYDGLYRILDAST  173 (262)
Q Consensus       106 ~~~~~-~~~~l~~~~~dg~i~vwd~~-~~~~~~~-~~~~~~~v~~~~~~~-~~~~l~~~~~dg~i~~~d~~~  173 (262)
                      .+|+. +.+++++|+.|+.+..||+| .++.+.. .+.|...|.++.-+| .+.++++|+.|-.|++||.|+
T Consensus       171 a~f~~~~pnlvytGgDD~~l~~~D~R~p~~~i~~n~kvH~~GV~SI~ss~~~~~~I~TGsYDe~i~~~DtRn  242 (339)
T KOG0280|consen  171 AKFSDKEPNLVYTGGDDGSLSCWDIRIPKTFIWHNSKVHTSGVVSIYSSPPKPTYIATGSYDECIRVLDTRN  242 (339)
T ss_pred             eecccCCCceEEecCCCceEEEEEecCCcceeeecceeeecceEEEecCCCCCceEEEeccccceeeeehhc
Confidence            99986 66789999999999999999 4444443 466899999999887 678999999999999999997

>PRK04922 tolB translocation protein TolB; Provisional

Probab=99.42  E-value=3.6e-11  Score=97.63  Aligned_cols=154  Identities=16%  Similarity=0.202  Sum_probs=104.9

Q ss_pred             eEEEEecCCCccceecccCCcceEEEEEeCCCCEEEeecCC---CeEEEEECCCCeeeeeeecCCCCeeeEEEccCCCEE
Q 042146           81 TIRLWDVPTATSLKTLIGHTNYVFCINFNPQSNRIVSDTFN---ETIRIWDIKTGKCLKVLPAHSDPVTAIDFNRDGTMI  157 (262)
Q Consensus        81 ~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d---g~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l  157 (262)
                      .|.+||.. +...+.+..+...+.+.+|+|+++.|+..+.+   ..|.+||+.+++... +....+...+.+|+|+|+.+
T Consensus       185 ~l~i~D~~-g~~~~~lt~~~~~v~~p~wSpDg~~la~~s~~~~~~~l~~~dl~~g~~~~-l~~~~g~~~~~~~SpDG~~l  262 (433)
T PRK04922        185 ALQVADSD-GYNPQTILRSAEPILSPAWSPDGKKLAYVSFERGRSAIYVQDLATGQREL-VASFRGINGAPSFSPDGRRL  262 (433)
T ss_pred             EEEEECCC-CCCceEeecCCCccccccCCCCCCEEEEEecCCCCcEEEEEECCCCCEEE-eccCCCCccCceECCCCCEE
Confidence            68889975 44445555677789999999999998876633   469999998876533 33344555688999999876


Q ss_pred             E-EEeCCC--eEEEEeCCC-------------------CCccEEEEEcC-CCe--EEEEecCCCceeeEEeccCCceeEE
Q 042146          158 V-TSSYDG--LYRILDAST-------------------PNGKFILVGTL-DNT--LRLWNYSTRKILKTYSGYTNSKYCI  212 (262)
Q Consensus       158 ~-~~~~dg--~i~~~d~~~-------------------~~~~~l~~~~~-dg~--i~i~d~~~~~~~~~~~~~~~~~~~~  212 (262)
                      + +.+.+|  .|++||+.+                   ++++.|+..+. +|.  |+++|+.+++... +..        
T Consensus       263 ~~~~s~~g~~~Iy~~d~~~g~~~~lt~~~~~~~~~~~spDG~~l~f~sd~~g~~~iy~~dl~~g~~~~-lt~--------  333 (433)
T PRK04922        263 ALTLSRDGNPEIYVMDLGSRQLTRLTNHFGIDTEPTWAPDGKSIYFTSDRGGRPQIYRVAASGGSAER-LTF--------  333 (433)
T ss_pred             EEEEeCCCCceEEEEECCCCCeEECccCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCeEE-eec--------
Confidence            5 445555  588898765                   67777776653 343  6666766554322 211        


Q ss_pred             EEEEecCCCeeEEccccceEEEEEcCCCCeEEEeeecCCC--cEEEEeec
Q 042146          213 SSTFSVTNGKYIVSHRDPVISVASHPAKNIIASGALDNDR--TMKIWTQE  260 (262)
Q Consensus       213 ~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~d~d~--~i~iw~~~  260 (262)
                                    +.......+|+|+|+.|+..+. .++  .|.+|++.
T Consensus       334 --------------~g~~~~~~~~SpDG~~Ia~~~~-~~~~~~I~v~d~~  368 (433)
T PRK04922        334 --------------QGNYNARASVSPDGKKIAMVHG-SGGQYRIAVMDLS  368 (433)
T ss_pred             --------------CCCCccCEEECCCCCEEEEEEC-CCCceeEEEEECC
Confidence                          2223446899999999987752 222  58888875

>KOG4190 consensus Uncharacterized conserved protein [Function unknown]

Probab=99.42  E-value=1.8e-13  Score=107.65  Aligned_cols=159  Identities=16%  Similarity=0.279  Sum_probs=120.6

Q ss_pred             ceecccCcCceEEEEEccCCCeEEEecCCCeEEEeecCCCCCCCCCCCCCCccccCCccccccceeEEEEecCCCcccee
Q 042146           16 TQTLNGHLRAVSYVKFSHDGRLLTSSSAEKTLLTYSLSSISNFDSTPPSPLQKFTGHEQGISDLATIRLWDVPTATSLKT   95 (262)
Q Consensus        16 ~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~i~v~d~~~~~~~~~   95 (262)
                      +..+.||+..|+.++--.+.+-+++++.|++|++|.+.....                            .+.+..+..+
T Consensus       728 L~nf~GH~~~iRai~AidNENSFiSASkDKTVKLWSik~EgD----------------------------~~~tsaCQfT  779 (1034)
T KOG4190|consen  728 LCNFTGHQEKIRAIAAIDNENSFISASKDKTVKLWSIKPEGD----------------------------EIGTSACQFT  779 (1034)
T ss_pred             eecccCcHHHhHHHHhcccccceeeccCCceEEEEEeccccC----------------------------ccccceeeeE
Confidence            456789999999999888889999999999999998754111                            1123446678


Q ss_pred             cccCCcceEEEEEeCCCCEEEeecCCCeEEEEECCCCeeeeeeec--CCCCeeeEEEcc--CCCEEEE-EeCCCeEEEEe
Q 042146           96 LIGHTNYVFCINFNPQSNRIVSDTFNETIRIWDIKTGKCLKVLPA--HSDPVTAIDFNR--DGTMIVT-SSYDGLYRILD  170 (262)
Q Consensus        96 ~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~--~~~~v~~~~~~~--~~~~l~~-~~~dg~i~~~d  170 (262)
                      +..|+.+|..+.|-.+-++++++  ||-|.+||.--++++..+..  ..+.+..+..-|  +...++. |+...+|+++|
T Consensus       780 Y~aHkk~i~~igfL~~lr~i~Sc--D~giHlWDPFigr~Laq~~dapk~~a~~~ikcl~nv~~~iliAgcsaeSTVKl~D  857 (1034)
T KOG4190|consen  780 YQAHKKPIHDIGFLADLRSIASC--DGGIHLWDPFIGRLLAQMEDAPKEGAGGNIKCLENVDRHILIAGCSAESTVKLFD  857 (1034)
T ss_pred             hhhccCcccceeeeeccceeeec--cCcceeecccccchhHhhhcCcccCCCceeEecccCcchheeeeccchhhheeee
Confidence            88999999999999888877765  78999999877776654321  122333333334  3344444 47889999999


Q ss_pred             CCC-------------------------CCccEEEEEcCCCeEEEEecCCCceeeEEec
Q 042146          171 AST-------------------------PNGKFILVGTLDNTLRLWNYSTRKILKTYSG  204 (262)
Q Consensus       171 ~~~-------------------------~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~  204 (262)
                      .|+                         +.|+.++++-.+|+|.+.|.++|+.+...+.
T Consensus       858 aRsce~~~E~kVcna~~Pna~~R~iaVa~~GN~lAa~LSnGci~~LDaR~G~vINswrp  916 (1034)
T KOG4190|consen  858 ARSCEWTCELKVCNAPGPNALTRAIAVADKGNKLAAALSNGCIAILDARNGKVINSWRP  916 (1034)
T ss_pred             cccccceeeEEeccCCCCchheeEEEeccCcchhhHHhcCCcEEEEecCCCceeccCCc
Confidence            887                         6788999999999999999999998887654

>PRK02889 tolB translocation protein TolB; Provisional

Probab=99.41  E-value=4.8e-11  Score=96.65  Aligned_cols=154  Identities=13%  Similarity=0.211  Sum_probs=100.6

Q ss_pred             eEEEEecCCCccceecccCCcceEEEEEeCCCCEEEeecCC---CeEEEEECCCCeeeeeeecCCCCeeeEEEccCCCEE
Q 042146           81 TIRLWDVPTATSLKTLIGHTNYVFCINFNPQSNRIVSDTFN---ETIRIWDIKTGKCLKVLPAHSDPVTAIDFNRDGTMI  157 (262)
Q Consensus        81 ~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d---g~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l  157 (262)
                      .|.++|.. +.....+..+...+.+.+|+|+|+.|+..+.+   ..|.+||+.+++... +....+.+...+|+|||+.|
T Consensus       177 ~L~~~D~d-G~~~~~l~~~~~~v~~p~wSPDG~~la~~s~~~~~~~I~~~dl~~g~~~~-l~~~~g~~~~~~~SPDG~~l  254 (427)
T PRK02889        177 QLQISDAD-GQNAQSALSSPEPIISPAWSPDGTKLAYVSFESKKPVVYVHDLATGRRRV-VANFKGSNSAPAWSPDGRTL  254 (427)
T ss_pred             EEEEECCC-CCCceEeccCCCCcccceEcCCCCEEEEEEccCCCcEEEEEECCCCCEEE-eecCCCCccceEECCCCCEE
Confidence            57777763 44444555677789999999999998876532   369999999886543 33344566789999999987


Q ss_pred             E-EEeCCCeEEEEeC--CC-------------------CCccEEEEEcC-CCeEEEEec--CCCceeeEEeccCCceeEE
Q 042146          158 V-TSSYDGLYRILDA--ST-------------------PNGKFILVGTL-DNTLRLWNY--STRKILKTYSGYTNSKYCI  212 (262)
Q Consensus       158 ~-~~~~dg~i~~~d~--~~-------------------~~~~~l~~~~~-dg~i~i~d~--~~~~~~~~~~~~~~~~~~~  212 (262)
                      + +.+.+|...+|.+  ..                   |+++.|+..+. +|...||.+  .+++... +..        
T Consensus       255 a~~~~~~g~~~Iy~~d~~~~~~~~lt~~~~~~~~~~wSpDG~~l~f~s~~~g~~~Iy~~~~~~g~~~~-lt~--------  325 (427)
T PRK02889        255 AVALSRDGNSQIYTVNADGSGLRRLTQSSGIDTEPFFSPDGRSIYFTSDRGGAPQIYRMPASGGAAQR-VTF--------  325 (427)
T ss_pred             EEEEccCCCceEEEEECCCCCcEECCCCCCCCcCeEEcCCCCEEEEEecCCCCcEEEEEECCCCceEE-Eec--------
Confidence            6 4567777666643  32                   67777665543 345555543  3333221 111        


Q ss_pred             EEEEecCCCeeEEccccceEEEEEcCCCCeEEEeeecCCC---cEEEEeecc
Q 042146          213 SSTFSVTNGKYIVSHRDPVISVASHPAKNIIASGALDNDR---TMKIWTQEK  261 (262)
Q Consensus       213 ~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~d~d~---~i~iw~~~~  261 (262)
                                    ........+|+|+|+.|+..+  .++   .|.+|++..
T Consensus       326 --------------~g~~~~~~~~SpDG~~Ia~~s--~~~g~~~I~v~d~~~  361 (427)
T PRK02889        326 --------------TGSYNTSPRISPDGKLLAYIS--RVGGAFKLYVQDLAT  361 (427)
T ss_pred             --------------CCCCcCceEECCCCCEEEEEE--ccCCcEEEEEEECCC
Confidence                          222234578999999998776  333   588998753

>PRK01029 tolB translocation protein TolB; Provisional

Probab=99.41  E-value=2.7e-10  Score=91.96  Aligned_cols=187  Identities=17%  Similarity=0.142  Sum_probs=109.3

Q ss_pred             eecccCcCceEEEEEccCCCeE---EEecCCCeEEEeecCCCCCCCCCCCCCCccccCCccccccceeEEEEecCCCccc
Q 042146           17 QTLNGHLRAVSYVKFSHDGRLL---TSSSAEKTLLTYSLSSISNFDSTPPSPLQKFTGHEQGISDLATIRLWDVPTATSL   93 (262)
Q Consensus        17 ~~~~~h~~~v~~~~~~~~~~~l---~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~i~v~d~~~~~~~   93 (262)
                      +.+......+.+=+|+|||+.+   ++...+|.-.                                 |.+.++..++..
T Consensus       178 ~~lt~~~~~~~sP~wSPDG~~~~~~y~S~~~g~~~---------------------------------I~~~~l~~g~~~  224 (428)
T PRK01029        178 RPLTQEHSLSITPTWMHIGSGFPYLYVSYKLGVPK---------------------------------IFLGSLENPAGK  224 (428)
T ss_pred             eEcccCCCCcccceEccCCCceEEEEEEccCCCce---------------------------------EEEEECCCCCce
Confidence            3344455666778999998752   2444444322                                 345566555432


Q ss_pred             eecccCCcceEEEEEeCCCCEEEeecC-----CCeEEEEECCCC---eeeeeeecCCCCeeeEEEccCCCEEEEEe-CCC
Q 042146           94 KTLIGHTNYVFCINFNPQSNRIVSDTF-----NETIRIWDIKTG---KCLKVLPAHSDPVTAIDFNRDGTMIVTSS-YDG  164 (262)
Q Consensus        94 ~~~~~~~~~v~~~~~~~~~~~l~~~~~-----dg~i~vwd~~~~---~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~dg  164 (262)
                      . +....+.....+|+|||+.|+..+.     +..+..|++..+   +...............+|+|||+.|+..+ .+|
T Consensus       225 ~-lt~~~g~~~~p~wSPDG~~Laf~s~~~g~~di~~~~~~~~~g~~g~~~~lt~~~~~~~~~p~wSPDG~~Laf~s~~~g  303 (428)
T PRK01029        225 K-ILALQGNQLMPTFSPRKKLLAFISDRYGNPDLFIQSFSLETGAIGKPRRLLNEAFGTQGNPSFSPDGTRLVFVSNKDG  303 (428)
T ss_pred             E-eecCCCCccceEECCCCCEEEEEECCCCCcceeEEEeecccCCCCcceEeecCCCCCcCCeEECCCCCEEEEEECCCC
Confidence            2 2223344556899999998875442     223445777642   33333322233456789999999777665 466


Q ss_pred             eEEEE--eCCC---------------------CCccEEEEEcCC---CeEEEEecCCCceeeEEeccCCceeEEEEEEec
Q 042146          165 LYRIL--DAST---------------------PNGKFILVGTLD---NTLRLWNYSTRKILKTYSGYTNSKYCISSTFSV  218 (262)
Q Consensus       165 ~i~~~--d~~~---------------------~~~~~l~~~~~d---g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~  218 (262)
                      ...+|  ++..                     |+++.|+..+.+   ..|.+||+.+++......               
T Consensus       304 ~~~ly~~~~~~~g~~~~~lt~~~~~~~~p~wSPDG~~Laf~~~~~g~~~I~v~dl~~g~~~~Lt~---------------  368 (428)
T PRK01029        304 RPRIYIMQIDPEGQSPRLLTKKYRNSSCPAWSPDGKKIAFCSVIKGVRQICVYDLATGRDYQLTT---------------  368 (428)
T ss_pred             CceEEEEECcccccceEEeccCCCCccceeECCCCCEEEEEEcCCCCcEEEEEECCCCCeEEccC---------------
Confidence            54444  4321                     778877765433   368888888776543222               


Q ss_pred             CCCeeEEccccceEEEEEcCCCCeEEEeee-cCCCcEEEEeec
Q 042146          219 TNGKYIVSHRDPVISVASHPAKNIIASGAL-DNDRTMKIWTQE  260 (262)
Q Consensus       219 ~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~-d~d~~i~iw~~~  260 (262)
                              ....+....|+|+|+.|+..+. +....|.++++.
T Consensus       369 --------~~~~~~~p~wSpDG~~L~f~~~~~g~~~L~~vdl~  403 (428)
T PRK01029        369 --------SPENKESPSWAIDSLHLVYSAGNSNESELYLISLI  403 (428)
T ss_pred             --------CCCCccceEECCCCCEEEEEECCCCCceEEEEECC
Confidence                    2234567899999998775441 123467777764

>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]

Probab=99.40  E-value=1.4e-10  Score=89.86  Aligned_cols=118  Identities=14%  Similarity=0.225  Sum_probs=87.9

Q ss_pred             cCcCceEEEEEccCCCeEEEecCCCeEEEeecCCCCCCCCCCCCCCccccCCccccccceeEEEEecCCCccceecccCC
Q 042146           21 GHLRAVSYVKFSHDGRLLTSSSAEKTLLTYSLSSISNFDSTPPSPLQKFTGHEQGISDLATIRLWDVPTATSLKTLIGHT  100 (262)
Q Consensus        21 ~h~~~v~~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~i~v~d~~~~~~~~~~~~~~  100 (262)
                      +|.+.|.-..+..+++-++.|..||-                                  .+-++|.++++ +..+...-
T Consensus       357 ~~~~~VrY~r~~~~~e~~vigt~dgD----------------------------------~l~iyd~~~~e-~kr~e~~l  401 (668)
T COG4946         357 GKKGGVRYRRIQVDPEGDVIGTNDGD----------------------------------KLGIYDKDGGE-VKRIEKDL  401 (668)
T ss_pred             CCCCceEEEEEccCCcceEEeccCCc----------------------------------eEEEEecCCce-EEEeeCCc
Confidence            45556666666666666666666661                                  24445555444 34445566


Q ss_pred             cceEEEEEeCCCCEEEeecCCCeEEEEECCCCeeeeeeecCCCCeeeEEEccCCCEEEEEeCCC----eEEEEeCCC
Q 042146          101 NYVFCINFNPQSNRIVSDTFNETIRIWDIKTGKCLKVLPAHSDPVTAIDFNRDGTMIVTSSYDG----LYRILDAST  173 (262)
Q Consensus       101 ~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg----~i~~~d~~~  173 (262)
                      +.|.+++.+|+|++++++.....|-+.|+.++.....-+...+-|+.++|||++++++-+--+|    .|+++|+..
T Consensus       402 g~I~av~vs~dGK~~vvaNdr~el~vididngnv~~idkS~~~lItdf~~~~nsr~iAYafP~gy~tq~Iklydm~~  478 (668)
T COG4946         402 GNIEAVKVSPDGKKVVVANDRFELWVIDIDNGNVRLIDKSEYGLITDFDWHPNSRWIAYAFPEGYYTQSIKLYDMDG  478 (668)
T ss_pred             cceEEEEEcCCCcEEEEEcCceEEEEEEecCCCeeEecccccceeEEEEEcCCceeEEEecCcceeeeeEEEEecCC
Confidence            8899999999999999999999999999999986554444567899999999999999887665    688998776

>KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only]

Probab=99.40  E-value=1.5e-12  Score=114.32  Aligned_cols=172  Identities=13%  Similarity=0.281  Sum_probs=118.3

Q ss_pred             ecccCcCceEEEEEccCCCeEEEecCCCeEEEeecCCCCCCCCCCCCCCccccCCccccccceeEEEEecCCCccceecc
Q 042146           18 TLNGHLRAVSYVKFSHDGRLLTSSSAEKTLLTYSLSSISNFDSTPPSPLQKFTGHEQGISDLATIRLWDVPTATSLKTLI   97 (262)
Q Consensus        18 ~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~i~v~d~~~~~~~~~~~   97 (262)
                      .++.|-..|.+|.-+|...+.+||+.||.+++|.-..        +.                .|..|+.         .
T Consensus      2203 ~~k~~v~~v~r~~sHp~~~~Yltgs~dgsv~~~~w~~--------~~----------------~v~~~rt---------~ 2249 (2439)
T KOG1064|consen 2203 MIKHPVENVRRMTSHPSDPYYLTGSQDGSVRMFEWGH--------GQ----------------QVVCFRT---------A 2249 (2439)
T ss_pred             EeecccCceeeecCCCCCceEEecCCCceEEEEeccC--------CC----------------eEEEeec---------c
Confidence            3445667799999999999999999999999993211        11                2333332         1


Q ss_pred             cCCcceEEEEEeCCCCEEEeecCCCeEEEEECCCCeeeeeeecCCCCeeeEEEccCCCEEEEEe---CCCeEEEEeCCC-
Q 042146           98 GHTNYVFCINFNPQSNRIVSDTFNETIRIWDIKTGKCLKVLPAHSDPVTAIDFNRDGTMIVTSS---YDGLYRILDAST-  173 (262)
Q Consensus        98 ~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~---~dg~i~~~d~~~-  173 (262)
                      +. ..|+.+.|+.+|+.+..+..||.+.+|... .++....+.|+....+++|-.  ..+++++   .++.+.+||... 
T Consensus      2250 g~-s~vtr~~f~~qGnk~~i~d~dg~l~l~q~~-pk~~~s~qchnk~~~Df~Fi~--s~~~tag~s~d~~n~~lwDtl~~ 2325 (2439)
T KOG1064|consen 2250 GN-SRVTRSRFNHQGNKFGIVDGDGDLSLWQAS-PKPYTSWQCHNKALSDFRFIG--SLLATAGRSSDNRNVCLWDTLLP 2325 (2439)
T ss_pred             Cc-chhhhhhhcccCCceeeeccCCceeecccC-CcceeccccCCccccceeeee--hhhhccccCCCCCcccchhcccC
Confidence            22 678889999999999999999999999876 555555666776666666653  4455543   356677777543 


Q ss_pred             --------------------CCccEEEEEcCCCeEEEEecCCCceeeEEeccCCceeEEEEEEecCCCeeEEccccceEE
Q 042146          174 --------------------PNGKFILVGTLDNTLRLWNYSTRKILKTYSGYTNSKYCISSTFSVTNGKYIVSHRDPVIS  233 (262)
Q Consensus       174 --------------------~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~  233 (262)
                                          |..+.|++|+.+|.|++||++..+++.+++.                             
T Consensus      2326 ~~~s~v~~~H~~gaT~l~~~P~~qllisggr~G~v~l~D~rqrql~h~~~~----------------------------- 2376 (2439)
T KOG1064|consen 2326 PMNSLVHTCHDGGATVLAYAPKHQLLISGGRKGEVCLFDIRQRQLRHTFQA----------------------------- 2376 (2439)
T ss_pred             cccceeeeecCCCceEEEEcCcceEEEecCCcCcEEEeehHHHHHHHHhhh-----------------------------
Confidence                                5666777777777777777776666655541                             


Q ss_pred             EEEcCCCCeEEEeeecCCCcEEEEeec
Q 042146          234 VASHPAKNIIASGALDNDRTMKIWTQE  260 (262)
Q Consensus       234 ~~~~p~~~~l~~~~~d~d~~i~iw~~~  260 (262)
                        ++ ...++++++  ..|.|+||++.
T Consensus      2377 --~~-~~~~f~~~s--s~g~ikIw~~s 2398 (2439)
T KOG1064|consen 2377 --LD-TREYFVTGS--SEGNIKIWRLS 2398 (2439)
T ss_pred             --hh-hhheeeccC--cccceEEEEcc
Confidence              33 456666666  66777777664

>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A

Probab=99.39  E-value=2.1e-10  Score=90.46  Aligned_cols=158  Identities=16%  Similarity=0.212  Sum_probs=100.8

Q ss_pred             eEEEEecCCCccceecccCCcceEEEEEeCCCCEEEeecCCCeEEEEECCCCeeeeeeecCCCCeeeEEEccCCCEEEEE
Q 042146           81 TIRLWDVPTATSLKTLIGHTNYVFCINFNPQSNRIVSDTFNETIRIWDIKTGKCLKVLPAHSDPVTAIDFNRDGTMIVTS  160 (262)
Q Consensus        81 ~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~  160 (262)
                      .|.+.|..+.+.+..+......-..+.++||++++++++.||.|.++|+.+++.+.+++... ....+++++||++++++
T Consensus        17 ~v~viD~~t~~~~~~i~~~~~~h~~~~~s~Dgr~~yv~~rdg~vsviD~~~~~~v~~i~~G~-~~~~i~~s~DG~~~~v~   95 (369)
T PF02239_consen   17 SVAVIDGATNKVVARIPTGGAPHAGLKFSPDGRYLYVANRDGTVSVIDLATGKVVATIKVGG-NPRGIAVSPDGKYVYVA   95 (369)
T ss_dssp             EEEEEETTT-SEEEEEE-STTEEEEEE-TT-SSEEEEEETTSEEEEEETTSSSEEEEEE-SS-EEEEEEE--TTTEEEEE
T ss_pred             EEEEEECCCCeEEEEEcCCCCceeEEEecCCCCEEEEEcCCCeEEEEECCcccEEEEEecCC-CcceEEEcCCCCEEEEE
Confidence            35555777778888877655544567899999999999999999999999999999987644 46889999999988877


Q ss_pred             e-CCCeEEEEeCCC---------------------------CCcc-EEEEEcCCCeEEEEecCCCceeeEEeccCCceeE
Q 042146          161 S-YDGLYRILDAST---------------------------PNGK-FILVGTLDNTLRLWNYSTRKILKTYSGYTNSKYC  211 (262)
Q Consensus       161 ~-~dg~i~~~d~~~---------------------------~~~~-~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~  211 (262)
                      . ..+.+.++|..+                           +..+ ++++--+.+.|.+.|....+.+..-.        
T Consensus        96 n~~~~~v~v~D~~tle~v~~I~~~~~~~~~~~~Rv~aIv~s~~~~~fVv~lkd~~~I~vVdy~d~~~~~~~~--------  167 (369)
T PF02239_consen   96 NYEPGTVSVIDAETLEPVKTIPTGGMPVDGPESRVAAIVASPGRPEFVVNLKDTGEIWVVDYSDPKNLKVTT--------  167 (369)
T ss_dssp             EEETTEEEEEETTT--EEEEEE--EE-TTTS---EEEEEE-SSSSEEEEEETTTTEEEEEETTTSSCEEEEE--------
T ss_pred             ecCCCceeEeccccccceeecccccccccccCCCceeEEecCCCCEEEEEEccCCeEEEEEeccccccceee--------
Confidence            5 689999999876                           1222 22222223444444443332211100        


Q ss_pred             EEEEEecCCCeeEEccccceEEEEEcCCCCeEEEeeecCCCcEEEEeecc
Q 042146          212 ISSTFSVTNGKYIVSHRDPVISVASHPAKNIIASGALDNDRTMKIWTQEK  261 (262)
Q Consensus       212 ~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~d~d~~i~iw~~~~  261 (262)
                                   ...........|+|++++++.+.. ....|-++|.++
T Consensus       168 -------------i~~g~~~~D~~~dpdgry~~va~~-~sn~i~viD~~~  203 (369)
T PF02239_consen  168 -------------IKVGRFPHDGGFDPDGRYFLVAAN-GSNKIAVIDTKT  203 (369)
T ss_dssp             -------------EE--TTEEEEEE-TTSSEEEEEEG-GGTEEEEEETTT
T ss_pred             -------------ecccccccccccCcccceeeeccc-ccceeEEEeecc
Confidence                         003345668899999998877653 356787887654

...

>KOG2041 consensus WD40 repeat protein [General function prediction only]

Probab=99.36  E-value=4.4e-11  Score=97.05  Aligned_cols=202  Identities=10%  Similarity=0.140  Sum_probs=141.2

Q ss_pred             cCceEEEEEccCCCeEEEecCCCeEEEeecCCCCCC-------CCCCCCCCccccCCccccccce---------------
Q 042146           23 LRAVSYVKFSHDGRLLTSSSAEKTLLTYSLSSISNF-------DSTPPSPLQKFTGHEQGISDLA---------------   80 (262)
Q Consensus        23 ~~~v~~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~-------~~~~~~~~~~~~~~~~~v~~~~---------------   80 (262)
                      .....|++|+.+..|+|.|+.||.+++-.+.+...-       ........+.+.+|...|..+.               
T Consensus        14 nvkL~c~~WNke~gyIAcgG~dGlLKVlKl~t~t~d~~~~glaa~snLsmNQtLeGH~~sV~vvTWNe~~QKLTtSDt~G   93 (1189)
T KOG2041|consen   14 NVKLHCAEWNKESGYIACGGADGLLKVLKLGTDTTDLNKSGLAAASNLSMNQTLEGHNASVMVVTWNENNQKLTTSDTSG   93 (1189)
T ss_pred             CceEEEEEEcccCCeEEeccccceeEEEEccccCCcccccccccccccchhhhhccCcceEEEEEeccccccccccCCCc
Confidence            456889999999999999999999999998763211       1122233456777877764333               


Q ss_pred             eEEEEecCCCccceecc--cCCcceEEEEEeCCCCEEEeecCCCeEEEEECCCCeeeeeeecCCCCeeeEEEccCCCEEE
Q 042146           81 TIRLWDVPTATSLKTLI--GHTNYVFCINFNPQSNRIVSDTFNETIRIWDIKTGKCLKVLPAHSDPVTAIDFNRDGTMIV  158 (262)
Q Consensus        81 ~i~v~d~~~~~~~~~~~--~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~  158 (262)
                      -|.||=+..+.....+.  ..++.|.+++|+.+|..++....||.|.+=.+..++ +.--.-.......+.|++|.+.++
T Consensus        94 lIiVWmlykgsW~EEMiNnRnKSvV~SmsWn~dG~kIcIvYeDGavIVGsvdGNR-IwgKeLkg~~l~hv~ws~D~~~~L  172 (1189)
T KOG2041|consen   94 LIIVWMLYKGSWCEEMINNRNKSVVVSMSWNLDGTKICIVYEDGAVIVGSVDGNR-IWGKELKGQLLAHVLWSEDLEQAL  172 (1189)
T ss_pred             eEEEEeeecccHHHHHhhCcCccEEEEEEEcCCCcEEEEEEccCCEEEEeeccce-ecchhcchheccceeecccHHHHH
Confidence            67778777776554442  356789999999999999999999999988776433 322221223356788999999988


Q ss_pred             EEeCCCeEEEEeCCC---------------------------------------CCccEEEEEcCCCeEEEEecCCCcee
Q 042146          159 TSSYDGLYRILDAST---------------------------------------PNGKFILVGTLDNTLRLWNYSTRKIL  199 (262)
Q Consensus       159 ~~~~dg~i~~~d~~~---------------------------------------~~~~~l~~~~~dg~i~i~d~~~~~~~  199 (262)
                      .+-..|.+.+||...                                       |+.+.|+++-.+|.++|-.-.+..  
T Consensus       173 f~~ange~hlydnqgnF~~Kl~~~c~Vn~tg~~s~~~~kia~i~w~~g~~~~v~pdrP~lavcy~nGr~QiMR~eND~--  250 (1189)
T KOG2041|consen  173 FKKANGETHLYDNQGNFERKLEKDCEVNGTGIFSNFPTKIAEIEWNTGPYQPVPPDRPRLAVCYANGRMQIMRSENDP--  250 (1189)
T ss_pred             hhhcCCcEEEecccccHHHhhhhceEEeeeeeecCCCccccceeeccCccccCCCCCCEEEEEEcCceehhhhhcCCC--
Confidence            888899999999665                                       455566666655555553322211  


Q ss_pred             eEEeccCCceeEEEEEEecCCCeeEEccccceEEEEEcCCCCeEEEeee
Q 042146          200 KTYSGYTNSKYCISSTFSVTNGKYIVSHRDPVISVASHPAKNIIASGAL  248 (262)
Q Consensus       200 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~  248 (262)
                                           ...+..-.-.+....|+|+|..||.+|.
T Consensus       251 ---------------------~Pvv~dtgm~~vgakWnh~G~vLAvcG~  278 (1189)
T KOG2041|consen  251 ---------------------EPVVVDTGMKIVGAKWNHNGAVLAVCGN  278 (1189)
T ss_pred             ---------------------CCeEEecccEeecceecCCCcEEEEccC
Confidence                                 1112224467888999999999999983

>PRK04792 tolB translocation protein TolB; Provisional

Probab=99.36  E-value=3.7e-10  Score=91.89  Aligned_cols=184  Identities=16%  Similarity=0.175  Sum_probs=108.7

Q ss_pred             eecccCcCceEEEEEccCCCeEEEecCC-CeEEEeecCCCCCCCCCCCCCCccccCCccccccceeEEEEecCCCcccee
Q 042146           17 QTLNGHLRAVSYVKFSHDGRLLTSSSAE-KTLLTYSLSSISNFDSTPPSPLQKFTGHEQGISDLATIRLWDVPTATSLKT   95 (262)
Q Consensus        17 ~~~~~h~~~v~~~~~~~~~~~l~s~~~d-~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~i~v~d~~~~~~~~~   95 (262)
                      +.+..+...+.+..|+|||+.|+..+.+ +.-                                 .|.++|+.+++... 
T Consensus       211 ~~l~~~~~~~~~p~wSPDG~~La~~s~~~g~~---------------------------------~L~~~dl~tg~~~~-  256 (448)
T PRK04792        211 QMLLRSPEPLMSPAWSPDGRKLAYVSFENRKA---------------------------------EIFVQDIYTQVREK-  256 (448)
T ss_pred             eEeecCCCcccCceECCCCCEEEEEEecCCCc---------------------------------EEEEEECCCCCeEE-
Confidence            3444556778899999999988876532 222                                 23455655544321 


Q ss_pred             cccCCcceEEEEEeCCCCEEEe-ecCCC--eEEEEECCCCeeeeeeecCCCCeeeEEEccCCCEEEEEeC-CC--eEEEE
Q 042146           96 LIGHTNYVFCINFNPQSNRIVS-DTFNE--TIRIWDIKTGKCLKVLPAHSDPVTAIDFNRDGTMIVTSSY-DG--LYRIL  169 (262)
Q Consensus        96 ~~~~~~~v~~~~~~~~~~~l~~-~~~dg--~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-dg--~i~~~  169 (262)
                      +..........+|+|||+.|+. .+.+|  .|+++|+.+++.. .+..+.......+|+||++.++..+. ++  .|.++
T Consensus       257 lt~~~g~~~~~~wSPDG~~La~~~~~~g~~~Iy~~dl~tg~~~-~lt~~~~~~~~p~wSpDG~~I~f~s~~~g~~~Iy~~  335 (448)
T PRK04792        257 VTSFPGINGAPRFSPDGKKLALVLSKDGQPEIYVVDIATKALT-RITRHRAIDTEPSWHPDGKSLIFTSERGGKPQIYRV  335 (448)
T ss_pred             ecCCCCCcCCeeECCCCCEEEEEEeCCCCeEEEEEECCCCCeE-ECccCCCCccceEECCCCCEEEEEECCCCCceEEEE
Confidence            1111223346799999997764 45566  4888898877643 44445556678899999998766553 33  46666


Q ss_pred             eCCC-------------------CCccEEEEEcC-CC--eEEEEecCCCceeeEEeccCCceeEEEEEEecCCCeeEEcc
Q 042146          170 DAST-------------------PNGKFILVGTL-DN--TLRLWNYSTRKILKTYSGYTNSKYCISSTFSVTNGKYIVSH  227 (262)
Q Consensus       170 d~~~-------------------~~~~~l~~~~~-dg--~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  227 (262)
                      |+..                   |++++|+..+. ++  .|.++|+.+++... +..                      .
T Consensus       336 dl~~g~~~~Lt~~g~~~~~~~~SpDG~~l~~~~~~~g~~~I~~~dl~~g~~~~-lt~----------------------~  392 (448)
T PRK04792        336 NLASGKVSRLTFEGEQNLGGSITPDGRSMIMVNRTNGKFNIARQDLETGAMQV-LTS----------------------T  392 (448)
T ss_pred             ECCCCCEEEEecCCCCCcCeeECCCCCEEEEEEecCCceEEEEEECCCCCeEE-ccC----------------------C
Confidence            6543                   56666655443 22  34455666554322 211                      1


Q ss_pred             ccceEEEEEcCCCCeEEEeeecCCCc--EEEEeec
Q 042146          228 RDPVISVASHPAKNIIASGALDNDRT--MKIWTQE  260 (262)
Q Consensus       228 ~~~v~~~~~~p~~~~l~~~~~d~d~~--i~iw~~~  260 (262)
                       .......|+|+|+.|+..+. .++.  +.+++.+
T Consensus       393 -~~d~~ps~spdG~~I~~~~~-~~g~~~l~~~~~~  425 (448)
T PRK04792        393 -RLDESPSVAPNGTMVIYSTT-YQGKQVLAAVSID  425 (448)
T ss_pred             -CCCCCceECCCCCEEEEEEe-cCCceEEEEEECC
Confidence             11123479999998877663 2443  5555543

>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB

Probab=99.35  E-value=2.8e-10  Score=92.36  Aligned_cols=153  Identities=16%  Similarity=0.235  Sum_probs=104.4

Q ss_pred             eEEEEecCCCccceecccCCcceEEEEEeCCCCEEEeecCC---CeEEEEECCCCeeeeeeecCCCCeeeEEEccCCCEE
Q 042146           81 TIRLWDVPTATSLKTLIGHTNYVFCINFNPQSNRIVSDTFN---ETIRIWDIKTGKCLKVLPAHSDPVTAIDFNRDGTMI  157 (262)
Q Consensus        81 ~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d---g~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l  157 (262)
                      .|.++|... .....+..+...+...+|+|++++++.+..+   ..|++||+.+++... +..+.+.+.+++|+|+++.|
T Consensus       171 ~l~~~d~~g-~~~~~l~~~~~~~~~p~~Spdg~~la~~~~~~~~~~i~v~d~~~g~~~~-~~~~~~~~~~~~~spDg~~l  248 (417)
T TIGR02800       171 ELQVADYDG-ANPQTITRSREPILSPAWSPDGQKLAYVSFESGKPEIYVQDLATGQREK-VASFPGMNGAPAFSPDGSKL  248 (417)
T ss_pred             eEEEEcCCC-CCCEEeecCCCceecccCCCCCCEEEEEEcCCCCcEEEEEECCCCCEEE-eecCCCCccceEECCCCCEE
Confidence            577778753 3344555566678899999999998876543   479999998876543 33455667789999999877


Q ss_pred             EE-EeCCC--eEEEEeCCC-------------------CCccEEEEEcC-CC--eEEEEecCCCceeeEEeccCCceeEE
Q 042146          158 VT-SSYDG--LYRILDAST-------------------PNGKFILVGTL-DN--TLRLWNYSTRKILKTYSGYTNSKYCI  212 (262)
Q Consensus       158 ~~-~~~dg--~i~~~d~~~-------------------~~~~~l~~~~~-dg--~i~i~d~~~~~~~~~~~~~~~~~~~~  212 (262)
                      +. .+.++  .|++||+..                   ++++.|+..+. .+  .|+++|+.+++.. .+..        
T Consensus       249 ~~~~~~~~~~~i~~~d~~~~~~~~l~~~~~~~~~~~~s~dg~~l~~~s~~~g~~~iy~~d~~~~~~~-~l~~--------  319 (417)
T TIGR02800       249 AVSLSKDGNPDIYVMDLDGKQLTRLTNGPGIDTEPSWSPDGKSIAFTSDRGGSPQIYMMDADGGEVR-RLTF--------  319 (417)
T ss_pred             EEEECCCCCccEEEEECCCCCEEECCCCCCCCCCEEECCCCCEEEEEECCCCCceEEEEECCCCCEE-Eeec--------
Confidence            64 44444  588888764                   56777665543 23  5777777665532 2221        


Q ss_pred             EEEEecCCCeeEEccccceEEEEEcCCCCeEEEeeecCCC---cEEEEeec
Q 042146          213 SSTFSVTNGKYIVSHRDPVISVASHPAKNIIASGALDNDR---TMKIWTQE  260 (262)
Q Consensus       213 ~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~d~d~---~i~iw~~~  260 (262)
                                    +...+....|+|++++++.++  .++   .|.+|++.
T Consensus       320 --------------~~~~~~~~~~spdg~~i~~~~--~~~~~~~i~~~d~~  354 (417)
T TIGR02800       320 --------------RGGYNASPSWSPDGDLIAFVH--REGGGFNIAVMDLD  354 (417)
T ss_pred             --------------CCCCccCeEECCCCCEEEEEE--ccCCceEEEEEeCC
Confidence                          334566788999999998887  444   67777764

The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.

>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3

Probab=99.34  E-value=3.5e-09  Score=83.48  Aligned_cols=216  Identities=13%  Similarity=0.216  Sum_probs=131.4

Q ss_pred             cCceEEEEEccCCCeEEEecC----CCeEEEeecCCCC-CCCC------CCCCCC-ccccCCccccc----cceeEEEEe
Q 042146           23 LRAVSYVKFSHDGRLLTSSSA----EKTLLTYSLSSIS-NFDS------TPPSPL-QKFTGHEQGIS----DLATIRLWD   86 (262)
Q Consensus        23 ~~~v~~~~~~~~~~~l~s~~~----d~~i~iw~~~~~~-~~~~------~~~~~~-~~~~~~~~~v~----~~~~i~v~d   86 (262)
                      .....-++++|++++|.+..+    ++.|..|++.... ....      ....+. ..+......+.    ..+.+.+++
T Consensus        36 ~~~Ps~l~~~~~~~~LY~~~e~~~~~g~v~~~~i~~~~g~L~~~~~~~~~g~~p~~i~~~~~g~~l~vany~~g~v~v~~  115 (345)
T PF10282_consen   36 GENPSWLAVSPDGRRLYVVNEGSGDSGGVSSYRIDPDTGTLTLLNSVPSGGSSPCHIAVDPDGRFLYVANYGGGSVSVFP  115 (345)
T ss_dssp             SSSECCEEE-TTSSEEEEEETTSSTTTEEEEEEEETTTTEEEEEEEEEESSSCEEEEEECTTSSEEEEEETTTTEEEEEE
T ss_pred             CCCCceEEEEeCCCEEEEEEccccCCCCEEEEEECCCcceeEEeeeeccCCCCcEEEEEecCCCEEEEEEccCCeEEEEE
Confidence            344567889999999988866    5789999876531 0000      000000 01111111111    122788888


Q ss_pred             cCCCcccee----c----------ccCCcceEEEEEeCCCCEEEeec-CCCeEEEEECCCCe--e--eeeee-cCCCCee
Q 042146           87 VPTATSLKT----L----------IGHTNYVFCINFNPQSNRIVSDT-FNETIRIWDIKTGK--C--LKVLP-AHSDPVT  146 (262)
Q Consensus        87 ~~~~~~~~~----~----------~~~~~~v~~~~~~~~~~~l~~~~-~dg~i~vwd~~~~~--~--~~~~~-~~~~~v~  146 (262)
                      +.....+..    +          ........++.++|+++++++.. ....|.+|++....  .  ...+. .....-.
T Consensus       116 l~~~g~l~~~~~~~~~~g~g~~~~rq~~~h~H~v~~~pdg~~v~v~dlG~D~v~~~~~~~~~~~l~~~~~~~~~~G~GPR  195 (345)
T PF10282_consen  116 LDDDGSLGEVVQTVRHEGSGPNPDRQEGPHPHQVVFSPDGRFVYVPDLGADRVYVYDIDDDTGKLTPVDSIKVPPGSGPR  195 (345)
T ss_dssp             ECTTSEEEEEEEEEESEEEESSTTTTSSTCEEEEEE-TTSSEEEEEETTTTEEEEEEE-TTS-TEEEEEEEECSTTSSEE
T ss_pred             ccCCcccceeeeecccCCCCCcccccccccceeEEECCCCCEEEEEecCCCEEEEEEEeCCCceEEEeeccccccCCCCc
Confidence            876322211    1          11234578899999999887653 34589999987654  2  12222 2345678


Q ss_pred             eEEEccCCCEEEEE-eCCCeEEEEeCCC------------------------------CCccEEEEEc-CCCeEEEEecC
Q 042146          147 AIDFNRDGTMIVTS-SYDGLYRILDAST------------------------------PNGKFILVGT-LDNTLRLWNYS  194 (262)
Q Consensus       147 ~~~~~~~~~~l~~~-~~dg~i~~~d~~~------------------------------~~~~~l~~~~-~dg~i~i~d~~  194 (262)
                      .++|+|+++++++. -.+++|.+|++..                              |++++|+++. ....|.+|++.
T Consensus       196 h~~f~pdg~~~Yv~~e~s~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~ispdg~~lyvsnr~~~sI~vf~~d  275 (345)
T PF10282_consen  196 HLAFSPDGKYAYVVNELSNTVSVFDYDPSDGSLTEIQTISTLPEGFTGENAPAEIAISPDGRFLYVSNRGSNSISVFDLD  275 (345)
T ss_dssp             EEEE-TTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEESCETTSCSSSSEEEEEE-TTSSEEEEEECTTTEEEEEEEC
T ss_pred             EEEEcCCcCEEEEecCCCCcEEEEeecccCCceeEEEEeeeccccccccCCceeEEEecCCCEEEEEeccCCEEEEEEEe
Confidence            99999999977655 4678899998872                              7888887766 45688999883


Q ss_pred             --CCce--eeEEeccCCceeEEEEEEecCCCeeEEccccceEEEEEcCCCCeEEEeeecCCCcEEEEeecc
Q 042146          195 --TRKI--LKTYSGYTNSKYCISSTFSVTNGKYIVSHRDPVISVASHPAKNIIASGALDNDRTMKIWTQEK  261 (262)
Q Consensus       195 --~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~d~d~~i~iw~~~~  261 (262)
                        ++++  +..+..                      .....+.++++|+|++|+++.. .++.|.+|+++.
T Consensus       276 ~~~g~l~~~~~~~~----------------------~G~~Pr~~~~s~~g~~l~Va~~-~s~~v~vf~~d~  323 (345)
T PF10282_consen  276 PATGTLTLVQTVPT----------------------GGKFPRHFAFSPDGRYLYVANQ-DSNTVSVFDIDP  323 (345)
T ss_dssp             TTTTTEEEEEEEEE----------------------SSSSEEEEEE-TTSSEEEEEET-TTTEEEEEEEET
T ss_pred             cCCCceEEEEEEeC----------------------CCCCccEEEEeCCCCEEEEEec-CCCeEEEEEEeC
Confidence              2332  222221                      3345789999999999999875 477899998863

1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.

>KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only]

Probab=99.31  E-value=1.8e-11  Score=107.87  Aligned_cols=163  Identities=14%  Similarity=0.291  Sum_probs=121.0

Q ss_pred             CCCCceeeeccc--ccceecc-cCcCceEEEEEccCCCeEEEecCCCeEEEeecCCCCCCCCCCCCCCccccCCcccccc
Q 042146            2 SSDRSLESFRPY--TLTQTLN-GHLRAVSYVKFSHDGRLLTSSSAEKTLLTYSLSSISNFDSTPPSPLQKFTGHEQGISD   78 (262)
Q Consensus         2 s~d~~i~~~~~~--~~~~~~~-~h~~~v~~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~   78 (262)
                      +.||+++.|.-.  +.+..++ +-...|+.+.|+.+|+.+..+..||.+.+|..                          
T Consensus      2227 s~dgsv~~~~w~~~~~v~~~rt~g~s~vtr~~f~~qGnk~~i~d~dg~l~l~q~-------------------------- 2280 (2439)
T KOG1064|consen 2227 SQDGSVRMFEWGHGQQVVCFRTAGNSRVTRSRFNHQGNKFGIVDGDGDLSLWQA-------------------------- 2280 (2439)
T ss_pred             CCCceEEEEeccCCCeEEEeeccCcchhhhhhhcccCCceeeeccCCceeeccc--------------------------
Confidence            356666666522  2222221 12266777777777777777777777777733                          


Q ss_pred             ceeEEEEecCCCccceecccCCcceEEEEEeCCCCEEEeec---CCCeEEEEECCC---CeeeeeeecCCCCeeeEEEcc
Q 042146           79 LATIRLWDVPTATSLKTLIGHTNYVFCINFNPQSNRIVSDT---FNETIRIWDIKT---GKCLKVLPAHSDPVTAIDFNR  152 (262)
Q Consensus        79 ~~~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~---~dg~i~vwd~~~---~~~~~~~~~~~~~v~~~~~~~  152 (262)
                               . .++....+.|........|-.  ..+++++   .++.+.+||..-   ..+++  .+|.+.++++++.|
T Consensus      2281 ---------~-pk~~~s~qchnk~~~Df~Fi~--s~~~tag~s~d~~n~~lwDtl~~~~~s~v~--~~H~~gaT~l~~~P 2346 (2439)
T KOG1064|consen 2281 ---------S-PKPYTSWQCHNKALSDFRFIG--SLLATAGRSSDNRNVCLWDTLLPPMNSLVH--TCHDGGATVLAYAP 2346 (2439)
T ss_pred             ---------C-CcceeccccCCccccceeeee--hhhhccccCCCCCcccchhcccCcccceee--eecCCCceEEEEcC
Confidence                     2 455666778888888888874  5666654   467899999642   23344  68999999999999


Q ss_pred             CCCEEEEEeCCCeEEEEeCCC----------CCccEEEEEcCCCeEEEEecCCCceeeEEec
Q 042146          153 DGTMIVTSSYDGLYRILDAST----------PNGKFILVGTLDNTLRLWNYSTRKILKTYSG  204 (262)
Q Consensus       153 ~~~~l~~~~~dg~i~~~d~~~----------~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~  204 (262)
                      ..+.|++|+.+|.|++||++.          ....++++|+..|.++||++.....+.+++.
T Consensus      2347 ~~qllisggr~G~v~l~D~rqrql~h~~~~~~~~~~f~~~ss~g~ikIw~~s~~~ll~~~p~ 2408 (2439)
T KOG1064|consen 2347 KHQLLISGGRKGEVCLFDIRQRQLRHTFQALDTREYFVTGSSEGNIKIWRLSEFGLLHTFPS 2408 (2439)
T ss_pred             cceEEEecCCcCcEEEeehHHHHHHHHhhhhhhhheeeccCcccceEEEEccccchhhcCch
Confidence            999999999999999999987          4567999999999999999998888877764

>KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown]

Probab=99.28  E-value=1.3e-10  Score=86.38  Aligned_cols=211  Identities=15%  Similarity=0.210  Sum_probs=136.9

Q ss_pred             cccceecccCcCceEEEEEccCCCeEEEecCCCeEEEeecCCCCCCCCCCCCCCccccCCccccccceeEEEEecCCCcc
Q 042146           13 YTLTQTLNGHLRAVSYVKFSHDGRLLTSSSAEKTLLTYSLSSISNFDSTPPSPLQKFTGHEQGISDLATIRLWDVPTATS   92 (262)
Q Consensus        13 ~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~i~v~d~~~~~~   92 (262)
                      ..+++.++||...|++...-|..+-+++.+.|.++++|--.                                  +.++.
T Consensus        14 p~ll~~~eG~~d~vn~~~l~~~e~gv~~~s~drtvrv~lkr----------------------------------ds~q~   59 (404)
T KOG1409|consen   14 PELLSKIEGSQDDVNAAILIPKEEGVISVSEDRTVRVWLKR----------------------------------DSGQY   59 (404)
T ss_pred             hhhhhhhcCchhhhhhheeccCCCCeEEccccceeeeEEec----------------------------------ccccc
Confidence            34677889999999999999988889999999999999321                                  12222


Q ss_pred             ceecc-cCCcceEEEEEeCCCCEEEeecCCCeEEEEECC----CCeeeeeeecCCCCeeeEEEccCCCEEEEEeCCCeEE
Q 042146           93 LKTLI-GHTNYVFCINFNPQSNRIVSDTFNETIRIWDIK----TGKCLKVLPAHSDPVTAIDFNRDGTMIVTSSYDGLYR  167 (262)
Q Consensus        93 ~~~~~-~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~----~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~  167 (262)
                      -..+. ....+++++.+.++...|++|-..|++.-+.+.    ....++....|...+..+-|+....++++++.|..+.
T Consensus        60 wpsI~~~mP~~~~~~~y~~e~~~L~vg~~ngtvtefs~sedfnkm~~~r~~~~h~~~v~~~if~~~~e~V~s~~~dk~~~  139 (404)
T KOG1409|consen   60 WPSIYHYMPSPCSAMEYVSESRRLYVGQDNGTVTEFALSEDFNKMTFLKDYLAHQARVSAIVFSLTHEWVLSTGKDKQFA  139 (404)
T ss_pred             CchhhhhCCCCceEeeeeccceEEEEEEecceEEEEEhhhhhhhcchhhhhhhhhcceeeEEecCCceeEEEeccccceE
Confidence            22221 234678999999999999999999999988653    3444566677889999999998888888888887654


Q ss_pred             EEeCCC-----------------CCccEEEEEcCCCeEEEEec--CCCceeeEEeccCCceeEEEEEEecCCCee-----
Q 042146          168 ILDAST-----------------PNGKFILVGTLDNTLRLWNY--STRKILKTYSGYTNSKYCISSTFSVTNGKY-----  223 (262)
Q Consensus       168 ~~d~~~-----------------~~~~~l~~~~~dg~i~i~d~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----  223 (262)
                      ---.+.                 -+-.+...|...|.|..-.+  ....++.++.+|...+.+...  .+.++.+     
T Consensus       140 ~hc~e~~~~lg~Y~~~~~~t~~~~d~~~~fvGd~~gqvt~lr~~~~~~~~i~~~~~h~~~~~~l~W--d~~~~~LfSg~~  217 (404)
T KOG1409|consen  140 WHCTESGNRLGGYNFETPASALQFDALYAFVGDHSGQITMLKLEQNGCQLITTFNGHTGEVTCLKW--DPGQRLLFSGAS  217 (404)
T ss_pred             EEeeccCCcccceEeeccCCCCceeeEEEEecccccceEEEEEeecCCceEEEEcCcccceEEEEE--cCCCcEEEeccc
Confidence            332222                 00012223333333332221  122333344444333333321  1111111     


Q ss_pred             ------------------EEccccceEEEEEcCCCCeEEEeeecCCCcEEEEeecc
Q 042146          224 ------------------IVSHRDPVISVASHPAKNIIASGALDNDRTMKIWTQEK  261 (262)
Q Consensus       224 ------------------~~~~~~~v~~~~~~p~~~~l~~~~~d~d~~i~iw~~~~  261 (262)
                                        ..+|...|..+..-+.-+.|++++  +||.|.+|+++.
T Consensus       218 d~~vi~wdigg~~g~~~el~gh~~kV~~l~~~~~t~~l~S~~--edg~i~~w~mn~  271 (404)
T KOG1409|consen  218 DHSVIMWDIGGRKGTAYELQGHNDKVQALSYAQHTRQLISCG--EDGGIVVWNMNV  271 (404)
T ss_pred             cCceEEEeccCCcceeeeeccchhhhhhhhhhhhheeeeecc--CCCeEEEEeccc
Confidence                              112777888888877788899999  999999999874

>KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]

Probab=99.24  E-value=1.9e-10  Score=85.59  Aligned_cols=206  Identities=19%  Similarity=0.337  Sum_probs=132.6

Q ss_pred             ccCcCceEEEEEccCCCeEEEecCCCeEEEeecCCCCCCCCCCCCCCccccCCccccccceeEEEEecCCCccceecccC
Q 042146           20 NGHLRAVSYVKFSHDGRLLTSSSAEKTLLTYSLSSISNFDSTPPSPLQKFTGHEQGISDLATIRLWDVPTATSLKTLIGH   99 (262)
Q Consensus        20 ~~h~~~v~~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~i~v~d~~~~~~~~~~~~~   99 (262)
                      .+|+-.|+++.++.|+..++++. |=.|.+|+++-...                       ...+.|+...    .+..-
T Consensus       161 NaHtyhiNSIS~NsD~Et~lSAD-dLRINLWnlei~d~-----------------------sFnIVDIKP~----nmEeL  212 (433)
T KOG1354|consen  161 NAHTYHINSISVNSDKETFLSAD-DLRINLWNLEIIDQ-----------------------SFNIVDIKPA----NMEEL  212 (433)
T ss_pred             ccceeEeeeeeecCccceEeecc-ceeeeeccccccCC-----------------------ceeEEEcccc----CHHHH
Confidence            46899999999999999888865 78899998754211                       2334454321    12223


Q ss_pred             CcceEEEEEeC-CCCEEEeecCCCeEEEEECCCCeee----eee------------ecCCCCeeeEEEccCCCEEEEEeC
Q 042146          100 TNYVFCINFNP-QSNRIVSDTFNETIRIWDIKTGKCL----KVL------------PAHSDPVTAIDFNRDGTMIVTSSY  162 (262)
Q Consensus       100 ~~~v~~~~~~~-~~~~l~~~~~dg~i~vwd~~~~~~~----~~~------------~~~~~~v~~~~~~~~~~~l~~~~~  162 (262)
                      ..-|++..|+| ..+.++-.++.|+|++.|++...+.    ..+            ..--..|.++.|+++|+++++-+.
T Consensus       213 teVITsaEFhp~~cn~f~YSSSKGtIrLcDmR~~aLCd~hsKlfEepedp~~rsffseiIsSISDvKFs~sGryilsRDy  292 (433)
T KOG1354|consen  213 TEVITSAEFHPHHCNVFVYSSSKGTIRLCDMRQSALCDAHSKLFEEPEDPSSRSFFSEIISSISDVKFSHSGRYILSRDY  292 (433)
T ss_pred             HHHHhhhccCHhHccEEEEecCCCcEEEeechhhhhhcchhhhhccccCCcchhhHHHHhhhhhceEEccCCcEEEEecc
Confidence            45688899999 5566777778999999999854221    011            111246899999999999987653


Q ss_pred             CCeEEEEeCCC------------------------------------CCccEEEEEcCCCeEEEEecCCCcee-eEEecc
Q 042146          163 DGLYRILDAST------------------------------------PNGKFILVGTLDNTLRLWNYSTRKIL-KTYSGY  205 (262)
Q Consensus       163 dg~i~~~d~~~------------------------------------~~~~~l~~~~~dg~i~i~d~~~~~~~-~~~~~~  205 (262)
                       -+|++||+..                                    .++.++++|+-....++|++..|... .++...
T Consensus       293 -ltvk~wD~nme~~pv~t~~vh~~lr~kLc~lYEnD~IfdKFec~~sg~~~~v~TGsy~n~frvf~~~~gsk~d~tl~as  371 (433)
T KOG1354|consen  293 -LTVKLWDLNMEAKPVETYPVHEYLRSKLCSLYENDAIFDKFECSWSGNDSYVMTGSYNNVFRVFNLARGSKEDFTLEAS  371 (433)
T ss_pred             -ceeEEEeccccCCcceEEeehHhHHHHHHHHhhccchhheeEEEEcCCcceEecccccceEEEecCCCCcceeeccccc
Confidence             5899999865                                    45679999999999999997655432 222221


Q ss_pred             CCc-----eeEEEEEEecCCCe----e--EEccccceEEEEEcCCCCeEEEeeecCCCcEEEE
Q 042146          206 TNS-----KYCISSTFSVTNGK----Y--IVSHRDPVISVASHPAKNIIASGALDNDRTMKIW  257 (262)
Q Consensus       206 ~~~-----~~~~~~~~~~~~~~----~--~~~~~~~v~~~~~~p~~~~l~~~~~d~d~~i~iw  257 (262)
                      ...     +............+    .  .......+...+|+|..+.+|.+.   -+.+.||
T Consensus       372 r~~~~~~~~~k~~~V~~~g~r~~~~~~vd~ldf~kkilh~aWhp~en~ia~aa---tnnlyif  431 (433)
T KOG1354|consen  372 RKNMKPRKVLKLRLVSSSGKRKRDEISVDALDFRKKILHTAWHPKENSIAVAA---TNNLYIF  431 (433)
T ss_pred             ccCCcccccccceeeecCCCccccccccchhhhhhHHHhhccCCccceeeeee---cCceEEe
Confidence            111     11111111100000    0  001344677889999999999986   3467665

>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain

Probab=99.23  E-value=3.2e-08  Score=76.86  Aligned_cols=34  Identities=15%  Similarity=0.218  Sum_probs=26.7

Q ss_pred             cccceEEEEEcCCCC-eEEEeeecCCCcEEEEeecc
Q 042146          227 HRDPVISVASHPAKN-IIASGALDNDRTMKIWTQEK  261 (262)
Q Consensus       227 ~~~~v~~~~~~p~~~-~l~~~~~d~d~~i~iw~~~~  261 (262)
                      -...+..++++||++ .|++... .++.|.+.|...
T Consensus       297 vG~~~~~iavS~Dgkp~lyvtn~-~s~~VsViD~~t  331 (352)
T TIGR02658       297 LGHEIDSINVSQDAKPLLYALST-GDKTLYIFDAET  331 (352)
T ss_pred             CCCceeeEEECCCCCeEEEEeCC-CCCcEEEEECcC
Confidence            355788999999999 7776663 478899999753

This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.

>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide

Probab=99.22  E-value=3.9e-11  Score=62.48  Aligned_cols=38  Identities=26%  Similarity=0.520  Sum_probs=36.1

Q ss_pred             ccceecccCcCceEEEEEccCCCeEEEecCCCeEEEee
Q 042146           14 TLTQTLNGHLRAVSYVKFSHDGRLLTSSSAEKTLLTYS   51 (262)
Q Consensus        14 ~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~iw~   51 (262)
                      ++++++++|.++|++++|+|++++|++++.|++|++||
T Consensus         2 ~~~~~~~~h~~~i~~i~~~~~~~~~~s~~~D~~i~vwd   39 (39)
T PF00400_consen    2 KCVRTFRGHSSSINSIAWSPDGNFLASGSSDGTIRVWD   39 (39)
T ss_dssp             EEEEEEESSSSSEEEEEEETTSSEEEEEETTSEEEEEE
T ss_pred             eEEEEEcCCCCcEEEEEEecccccceeeCCCCEEEEEC
Confidence            56789999999999999999999999999999999996

WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....

>PRK00178 tolB translocation protein TolB; Provisional

Probab=99.22  E-value=5.6e-09  Score=85.05  Aligned_cols=154  Identities=14%  Similarity=0.156  Sum_probs=99.2

Q ss_pred             eEEEEecCCCccceecccCCcceEEEEEeCCCCEEEeecCC---CeEEEEECCCCeeeeeeecCCCCeeeEEEccCCCEE
Q 042146           81 TIRLWDVPTATSLKTLIGHTNYVFCINFNPQSNRIVSDTFN---ETIRIWDIKTGKCLKVLPAHSDPVTAIDFNRDGTMI  157 (262)
Q Consensus        81 ~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d---g~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l  157 (262)
                      .|.++|...+. .+.+..+...+...+|+|+|+.|+..+.+   ..|.+||+.+++... +....+.+...+|+|+|+.|
T Consensus       180 ~l~~~d~~g~~-~~~l~~~~~~~~~p~wSpDG~~la~~s~~~~~~~l~~~~l~~g~~~~-l~~~~g~~~~~~~SpDG~~l  257 (430)
T PRK00178        180 TLQRSDYDGAR-AVTLLQSREPILSPRWSPDGKRIAYVSFEQKRPRIFVQNLDTGRREQ-ITNFEGLNGAPAWSPDGSKL  257 (430)
T ss_pred             EEEEECCCCCC-ceEEecCCCceeeeeECCCCCEEEEEEcCCCCCEEEEEECCCCCEEE-ccCCCCCcCCeEECCCCCEE
Confidence            47777776443 34455567788999999999998765533   369999998876533 33334455678999999987


Q ss_pred             E-EEeCCC--eEEEEeCCC-------------------CCccEEEEEcC-CC--eEEEEecCCCceeeEEeccCCceeEE
Q 042146          158 V-TSSYDG--LYRILDAST-------------------PNGKFILVGTL-DN--TLRLWNYSTRKILKTYSGYTNSKYCI  212 (262)
Q Consensus       158 ~-~~~~dg--~i~~~d~~~-------------------~~~~~l~~~~~-dg--~i~i~d~~~~~~~~~~~~~~~~~~~~  212 (262)
                      + +.+.+|  .|.++|+.+                   |+++.++..+. +|  .|+++|+.+++......         
T Consensus       258 a~~~~~~g~~~Iy~~d~~~~~~~~lt~~~~~~~~~~~spDg~~i~f~s~~~g~~~iy~~d~~~g~~~~lt~---------  328 (430)
T PRK00178        258 AFVLSKDGNPEIYVMDLASRQLSRVTNHPAIDTEPFWGKDGRTLYFTSDRGGKPQIYKVNVNGGRAERVTF---------  328 (430)
T ss_pred             EEEEccCCCceEEEEECCCCCeEEcccCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECCCCCEEEeec---------
Confidence            6 444455  588888765                   67776655443 33  56667776665432211         


Q ss_pred             EEEEecCCCeeEEccccceEEEEEcCCCCeEEEeeecCCC--cEEEEeec
Q 042146          213 SSTFSVTNGKYIVSHRDPVISVASHPAKNIIASGALDNDR--TMKIWTQE  260 (262)
Q Consensus       213 ~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~d~d~--~i~iw~~~  260 (262)
                                    .........|+|+++.|+..+. .++  .|.+||+.
T Consensus       329 --------------~~~~~~~~~~Spdg~~i~~~~~-~~~~~~l~~~dl~  363 (430)
T PRK00178        329 --------------VGNYNARPRLSADGKTLVMVHR-QDGNFHVAAQDLQ  363 (430)
T ss_pred             --------------CCCCccceEECCCCCEEEEEEc-cCCceEEEEEECC
Confidence                          1112235679999998887762 233  46667664

>KOG1334 consensus WD40 repeat protein [General function prediction only]

Probab=99.20  E-value=1.4e-10  Score=89.96  Aligned_cols=166  Identities=20%  Similarity=0.320  Sum_probs=113.7

Q ss_pred             ceecccCCcceEEEEEeCCCCEEEeecCCCeEEEEECCCCeeeee-----------------------------------
Q 042146           93 LKTLIGHTNYVFCINFNPQSNRIVSDTFNETIRIWDIKTGKCLKV-----------------------------------  137 (262)
Q Consensus        93 ~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~-----------------------------------  137 (262)
                      ...+..|.+.|+.+.|+..|..+++|+.|..|.+||...++....                                   
T Consensus       135 ~~kL~~H~GcVntV~FN~~Gd~l~SgSDD~~vv~WdW~~~~~~l~f~SGH~~NvfQaKFiP~s~d~ti~~~s~dgqvr~s  214 (559)
T KOG1334|consen  135 QKKLNKHKGCVNTVHFNQRGDVLASGSDDLQVVVWDWVSGSPKLSFESGHCNNVFQAKFIPFSGDRTIVTSSRDGQVRVS  214 (559)
T ss_pred             hhcccCCCCccceeeecccCceeeccCccceEEeehhhccCcccccccccccchhhhhccCCCCCcCceeccccCceeee
Confidence            345678999999999999999999999999999999865432221                                   


Q ss_pred             -------------eecCCCCeeeEEEccCC-CEEEEEeCCCeEEEEeCCC---------------------------CCc
Q 042146          138 -------------LPAHSDPVTAIDFNRDG-TMIVTSSYDGLYRILDAST---------------------------PNG  176 (262)
Q Consensus       138 -------------~~~~~~~v~~~~~~~~~-~~l~~~~~dg~i~~~d~~~---------------------------~~~  176 (262)
                                   +..|.++|..++.-|+. ..|.+++.|+.+.-+|++.                           .+.
T Consensus       215 ~i~~t~~~e~t~rl~~h~g~vhklav~p~sp~~f~S~geD~~v~~~Dlr~~~pa~~~~cr~~~~~~~v~L~~Ia~~P~nt  294 (559)
T KOG1334|consen  215 EILETGYVENTKRLAPHEGPVHKLAVEPDSPKPFLSCGEDAVVFHIDLRQDVPAEKFVCREADEKERVGLYTIAVDPRNT  294 (559)
T ss_pred             eeccccceecceecccccCccceeeecCCCCCcccccccccceeeeeeccCCccceeeeeccCCccceeeeeEecCCCCc
Confidence                         22477778888888844 4688888888888888776                           234


Q ss_pred             cEEEEEcCCCeEEEEecCCCce------eeEEecc----CCceeEEEEEEecCCCeeEEc--------------------
Q 042146          177 KFILVGTLDNTLRLWNYSTRKI------LKTYSGY----TNSKYCISSTFSVTNGKYIVS--------------------  226 (262)
Q Consensus       177 ~~l~~~~~dg~i~i~d~~~~~~------~~~~~~~----~~~~~~~~~~~~~~~~~~~~~--------------------  226 (262)
                      ..+++|+.|..+++||.+.-..      +..+-.+    ...+....+.+....+.++++                    
T Consensus       295 ~~faVgG~dqf~RvYD~R~~~~e~~n~~~~~f~p~hl~~d~~v~ITgl~Ysh~~sElLaSYnDe~IYLF~~~~~~G~~p~  374 (559)
T KOG1334|consen  295 NEFAVGGSDQFARVYDQRRIDKEENNGVLDKFCPHHLVEDDPVNITGLVYSHDGSELLASYNDEDIYLFNKSMGDGSEPD  374 (559)
T ss_pred             cccccCChhhhhhhhcccchhhccccchhhhcCCccccccCcccceeEEecCCccceeeeecccceEEeccccccCCCCC
Confidence            5788999999999999774221      1111111    223333333333222222222                    


Q ss_pred             ---------------cc--cceEEEEE-cCCCCeEEEeeecCCCcEEEEeec
Q 042146          227 ---------------HR--DPVISVAS-HPAKNIIASGALDNDRTMKIWTQE  260 (262)
Q Consensus       227 ---------------~~--~~v~~~~~-~p~~~~l~~~~~d~d~~i~iw~~~  260 (262)
                                     |.  ..|..+-| -|...++++|+  .-|.|.||+-+
T Consensus       375 ~~s~~~~~~k~vYKGHrN~~TVKgVNFfGPrsEyVvSGS--DCGhIFiW~K~  424 (559)
T KOG1334|consen  375 PSSPREQYVKRVYKGHRNSRTVKGVNFFGPRSEYVVSGS--DCGHIFIWDKK  424 (559)
T ss_pred             CCcchhhccchhhcccccccccceeeeccCccceEEecC--ccceEEEEecc
Confidence                           32  34666654 67888999999  89999999864

>KOG3914 consensus WD repeat protein WDR4 [Function unknown]

Probab=99.20  E-value=1e-09  Score=83.23  Aligned_cols=144  Identities=16%  Similarity=0.286  Sum_probs=97.1

Q ss_pred             eEEEEEccCCCeEEEecCCCeEEEeecCCCCCCCCCCCCCCccccCCccccc---------------cceeEEEEecCCC
Q 042146           26 VSYVKFSHDGRLLTSSSAEKTLLTYSLSSISNFDSTPPSPLQKFTGHEQGIS---------------DLATIRLWDVPTA   90 (262)
Q Consensus        26 v~~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~---------------~~~~i~v~d~~~~   90 (262)
                      ......+|.++++|.+..+....++++.....  ................+.               ....+.+|.... 
T Consensus        65 ~~~~~~s~~~~llAv~~~~K~~~~f~~~~~~~--~~kl~~~~~v~~~~~ai~~~~~~~sv~v~dkagD~~~~di~s~~~-  141 (390)
T KOG3914|consen   65 PALVLTSDSGRLVAVATSSKQRAVFDYRENPK--GAKLLDVSCVPKRPTAISFIREDTSVLVADKAGDVYSFDILSADS-  141 (390)
T ss_pred             ccccccCCCceEEEEEeCCCceEEEEEecCCC--cceeeeEeecccCcceeeeeeccceEEEEeecCCceeeeeecccc-
Confidence            44455678899999998888877777655332  000000000111111111               111455555554 


Q ss_pred             ccceecccCCcceEEEEEeCCCCEEEeecCCCeEEEEECCCCeeeeee-ecCCCCeeeEEEccCCCEEEEEeCCCeEEEE
Q 042146           91 TSLKTLIGHTNYVFCINFNPQSNRIVSDTFNETIRIWDIKTGKCLKVL-PAHSDPVTAIDFNRDGTMIVTSSYDGLYRIL  169 (262)
Q Consensus        91 ~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~-~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~  169 (262)
                      .....+-+|-.++..++++||+++++++..|..|++-.......+..+ -+|+.-|..++.-++ ..|++++.|+++++|
T Consensus       142 ~~~~~~lGhvSml~dVavS~D~~~IitaDRDEkIRvs~ypa~f~IesfclGH~eFVS~isl~~~-~~LlS~sGD~tlr~W  220 (390)
T KOG3914|consen  142 GRCEPILGHVSMLLDVAVSPDDQFIITADRDEKIRVSRYPATFVIESFCLGHKEFVSTISLTDN-YLLLSGSGDKTLRLW  220 (390)
T ss_pred             cCcchhhhhhhhhheeeecCCCCEEEEecCCceEEEEecCcccchhhhccccHhheeeeeeccC-ceeeecCCCCcEEEE
Confidence            334455689999999999999999999999999999776554444443 469999999998764 458999999999999


Q ss_pred             eCCC
Q 042146          170 DAST  173 (262)
Q Consensus       170 d~~~  173 (262)
                      |.++
T Consensus       221 d~~s  224 (390)
T KOG3914|consen  221 DITS  224 (390)
T ss_pred             eccc
Confidence            9887

>PRK01029 tolB translocation protein TolB; Provisional

Probab=99.19  E-value=4.2e-09  Score=85.17  Aligned_cols=100  Identities=20%  Similarity=0.205  Sum_probs=64.5

Q ss_pred             ceEEEEEeCCCCEEEeec-CCCe--EEEEECCC-CeeeeeeecCCCCeeeEEEccCCCEEEEEeCC---CeEEEEeCCC-
Q 042146          102 YVFCINFNPQSNRIVSDT-FNET--IRIWDIKT-GKCLKVLPAHSDPVTAIDFNRDGTMIVTSSYD---GLYRILDAST-  173 (262)
Q Consensus       102 ~v~~~~~~~~~~~l~~~~-~dg~--i~vwd~~~-~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d---g~i~~~d~~~-  173 (262)
                      .....+|+|||+.|+..+ .+|.  |.++++.. +.....+..+...+....|+|||+.|+..+.+   ..|.+||+.. 
T Consensus       282 ~~~~p~wSPDG~~Laf~s~~~g~~~ly~~~~~~~g~~~~~lt~~~~~~~~p~wSPDG~~Laf~~~~~g~~~I~v~dl~~g  361 (428)
T PRK01029        282 TQGNPSFSPDGTRLVFVSNKDGRPRIYIMQIDPEGQSPRLLTKKYRNSSCPAWSPDGKKIAFCSVIKGVRQICVYDLATG  361 (428)
T ss_pred             CcCCeEECCCCCEEEEEECCCCCceEEEEECcccccceEEeccCCCCccceeECCCCCEEEEEEcCCCCcEEEEEECCCC
Confidence            345679999999877654 4564  44445532 23334444455567889999999988876543   3688999765 


Q ss_pred             ------------------CCccEEEEEcC---CCeEEEEecCCCceeeE
Q 042146          174 ------------------PNGKFILVGTL---DNTLRLWNYSTRKILKT  201 (262)
Q Consensus       174 ------------------~~~~~l~~~~~---dg~i~i~d~~~~~~~~~  201 (262)
                                        |+++.|+....   ...|+++|+..++....
T Consensus       362 ~~~~Lt~~~~~~~~p~wSpDG~~L~f~~~~~g~~~L~~vdl~~g~~~~L  410 (428)
T PRK01029        362 RDYQLTTSPENKESPSWAIDSLHLVYSAGNSNESELYLISLITKKTRKI  410 (428)
T ss_pred             CeEEccCCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCEEEe
Confidence                              67776654332   24677778776654433

>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal

Probab=99.19  E-value=4.9e-08  Score=71.41  Aligned_cols=194  Identities=10%  Similarity=0.144  Sum_probs=105.5

Q ss_pred             eEEEEEccCCCeEEEecCCCeEEEeecCCCCCCCCCCCCCCccccCCccccccceeEEEEecCCCccceecccCCcceEE
Q 042146           26 VSYVKFSHDGRLLTSSSAEKTLLTYSLSSISNFDSTPPSPLQKFTGHEQGISDLATIRLWDVPTATSLKTLIGHTNYVFC  105 (262)
Q Consensus        26 v~~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~i~v~d~~~~~~~~~~~~~~~~v~~  105 (262)
                      =+-++||||+.+||.+...|+|+++|+.....+                           .+.....  ....-...|..
T Consensus        46 WRkl~WSpD~tlLa~a~S~G~i~vfdl~g~~lf---------------------------~I~p~~~--~~~d~~~Aiag   96 (282)
T PF15492_consen   46 WRKLAWSPDCTLLAYAESTGTIRVFDLMGSELF---------------------------VIPPAMS--FPGDLSDAIAG   96 (282)
T ss_pred             heEEEECCCCcEEEEEcCCCeEEEEecccceeE---------------------------EcCcccc--cCCccccceee
Confidence            467999999999999999999999998753222                           1111000  00011234555


Q ss_pred             EEEeCC------CCEEEeecCCCeEEEEECCC-----Ceeeeeee---cCCCCeeeEEEccCCCEEEEEeCCCeEEEEeC
Q 042146          106 INFNPQ------SNRIVSDTFNETIRIWDIKT-----GKCLKVLP---AHSDPVTAIDFNRDGTMIVTSSYDGLYRILDA  171 (262)
Q Consensus       106 ~~~~~~------~~~l~~~~~dg~i~vwd~~~-----~~~~~~~~---~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~d~  171 (262)
                      |.|.+.      ...|++-..+|.++=|-+..     .+..+.+.   .+...|.++.|+|..++|++|+....      
T Consensus        97 l~Fl~~~~s~~ws~ELlvi~Y~G~L~Sy~vs~gt~q~y~e~hsfsf~~~yp~Gi~~~vy~p~h~LLlVgG~~~~------  170 (282)
T PF15492_consen   97 LIFLEYKKSAQWSYELLVINYRGQLRSYLVSVGTNQGYQENHSFSFSSHYPHGINSAVYHPKHRLLLVGGCEQN------  170 (282)
T ss_pred             eEeeccccccccceeEEEEeccceeeeEEEEcccCCcceeeEEEEecccCCCceeEEEEcCCCCEEEEeccCCC------
Confidence            555431      12355556677777666432     22333332   24678999999999888887764321      


Q ss_pred             CCCCccEEEEEcCCCeEEEEecCCCceeeEEe-ccCCceeEE---EEEEecCCCeeE---EccccceEEEEEcCCCCeEE
Q 042146          172 STPNGKFILVGTLDNTLRLWNYSTRKILKTYS-GYTNSKYCI---SSTFSVTNGKYI---VSHRDPVISVASHPAKNIIA  244 (262)
Q Consensus       172 ~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~-~~~~~~~~~---~~~~~~~~~~~~---~~~~~~v~~~~~~p~~~~l~  244 (262)
                          ....-.++ +.-+.-|.+-++.+-.... ..++.+...   ...+......++   ......|..|..||||..||
T Consensus       171 ----~~~~s~a~-~~GLtaWRiL~~~Pyyk~v~~~~~~~~~~~~~~~~~~~~~~~~fs~~~~~~d~i~kmSlSPdg~~La  245 (282)
T PF15492_consen  171 ----QDGMSKAS-SCGLTAWRILSDSPYYKQVTSSEDDITASSKRRGLLRIPSFKFFSRQGQEQDGIFKMSLSPDGSLLA  245 (282)
T ss_pred             ----CCcccccc-ccCceEEEEcCCCCcEEEccccCccccccccccceeeccceeeeeccccCCCceEEEEECCCCCEEE
Confidence                00001111 1123444443332221111 111111000   000000111111   11467899999999999999


Q ss_pred             EeeecCCCcEEEEeecc
Q 042146          245 SGALDNDRTMKIWTQEK  261 (262)
Q Consensus       245 ~~~~d~d~~i~iw~~~~  261 (262)
                      +..  .+|.|.+|++..
T Consensus       246 ~ih--~sG~lsLW~iPs  260 (282)
T PF15492_consen  246 CIH--FSGSLSLWEIPS  260 (282)
T ss_pred             EEE--cCCeEEEEecCc
Confidence            999  889999999863

>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]

Probab=99.18  E-value=8.1e-08  Score=72.40  Aligned_cols=221  Identities=15%  Similarity=0.295  Sum_probs=137.9

Q ss_pred             cCcCceEEEEEccCCCeEEEecC---CCeEEEeecCCCCC------CCCCCCCC--CccccCCcccc----ccceeEEEE
Q 042146           21 GHLRAVSYVKFSHDGRLLTSSSA---EKTLLTYSLSSISN------FDSTPPSP--LQKFTGHEQGI----SDLATIRLW   85 (262)
Q Consensus        21 ~h~~~v~~~~~~~~~~~l~s~~~---d~~i~iw~~~~~~~------~~~~~~~~--~~~~~~~~~~v----~~~~~i~v~   85 (262)
                      .+.+.++-|+|+|+++.|.++-.   +|.|.-|.++....      .......+  -..+......+    +..+.|.++
T Consensus        37 ~~~~nptyl~~~~~~~~LY~v~~~~~~ggvaay~iD~~~G~Lt~ln~~~~~g~~p~yvsvd~~g~~vf~AnY~~g~v~v~  116 (346)
T COG2706          37 AELGNPTYLAVNPDQRHLYVVNEPGEEGGVAAYRIDPDDGRLTFLNRQTLPGSPPCYVSVDEDGRFVFVANYHSGSVSVY  116 (346)
T ss_pred             cccCCCceEEECCCCCEEEEEEecCCcCcEEEEEEcCCCCeEEEeeccccCCCCCeEEEECCCCCEEEEEEccCceEEEE
Confidence            46777899999999999888754   47788887765210      01111111  11111111111    122377788


Q ss_pred             ecCCCccce---ecccCCcc----------eEEEEEeCCCCEEEeecC-CCeEEEEECCCCeeee----eeecCCCCeee
Q 042146           86 DVPTATSLK---TLIGHTNY----------VFCINFNPQSNRIVSDTF-NETIRIWDIKTGKCLK----VLPAHSDPVTA  147 (262)
Q Consensus        86 d~~~~~~~~---~~~~~~~~----------v~~~~~~~~~~~l~~~~~-dg~i~vwd~~~~~~~~----~~~~~~~~v~~  147 (262)
                      -++....+.   ....|.+.          +....+.|++++|++..- --.|.+|++..++...    .++ ....-..
T Consensus       117 p~~~dG~l~~~v~~~~h~g~~p~~rQ~~~h~H~a~~tP~~~~l~v~DLG~Dri~~y~~~dg~L~~~~~~~v~-~G~GPRH  195 (346)
T COG2706         117 PLQADGSLQPVVQVVKHTGSGPHERQESPHVHSANFTPDGRYLVVPDLGTDRIFLYDLDDGKLTPADPAEVK-PGAGPRH  195 (346)
T ss_pred             EcccCCccccceeeeecCCCCCCccccCCccceeeeCCCCCEEEEeecCCceEEEEEcccCccccccccccC-CCCCcce
Confidence            775522221   12223333          788899999999887653 2379999999775432    222 3445689


Q ss_pred             EEEccCCCEEEEEe-CCCeEEEEeCCC------------------------------CCccEEEEEcCC-CeEEEEecCC
Q 042146          148 IDFNRDGTMIVTSS-YDGLYRILDAST------------------------------PNGKFILVGTLD-NTLRLWNYST  195 (262)
Q Consensus       148 ~~~~~~~~~l~~~~-~dg~i~~~d~~~------------------------------~~~~~l~~~~~d-g~i~i~d~~~  195 (262)
                      |.|+|++++..... .+++|.+|....                              ++|++|.++..- ..|.+|.+..
T Consensus       196 i~FHpn~k~aY~v~EL~stV~v~~y~~~~g~~~~lQ~i~tlP~dF~g~~~~aaIhis~dGrFLYasNRg~dsI~~f~V~~  275 (346)
T COG2706         196 IVFHPNGKYAYLVNELNSTVDVLEYNPAVGKFEELQTIDTLPEDFTGTNWAAAIHISPDGRFLYASNRGHDSIAVFSVDP  275 (346)
T ss_pred             EEEcCCCcEEEEEeccCCEEEEEEEcCCCceEEEeeeeccCccccCCCCceeEEEECCCCCEEEEecCCCCeEEEEEEcC
Confidence            99999999866554 789999998665                              788888877532 3566665543


Q ss_pred             C-ceeeEEeccCCceeEEEEEEecCCCeeEEccccceEEEEEcCCCCeEEEeeecCCCcEEEEeeccC
Q 042146          196 R-KILKTYSGYTNSKYCISSTFSVTNGKYIVSHRDPVISVASHPAKNIIASGALDNDRTMKIWTQEKE  262 (262)
Q Consensus       196 ~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~d~d~~i~iw~~~~~  262 (262)
                      . ..+..+....                   .+....+...++|.+++|+++..+ ..+|.+|.++++
T Consensus       276 ~~g~L~~~~~~~-------------------teg~~PR~F~i~~~g~~Liaa~q~-sd~i~vf~~d~~  323 (346)
T COG2706         276 DGGKLELVGITP-------------------TEGQFPRDFNINPSGRFLIAANQK-SDNITVFERDKE  323 (346)
T ss_pred             CCCEEEEEEEec-------------------cCCcCCccceeCCCCCEEEEEccC-CCcEEEEEEcCC
Confidence            2 2222222110                   044457889999999999999864 556999988753

>KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism]

Probab=99.17  E-value=5.4e-09  Score=76.41  Aligned_cols=101  Identities=15%  Similarity=0.196  Sum_probs=83.6

Q ss_pred             eEEEEEeCCCCEEEeecCCCeEEEEECCCCee--eeeeecCCCCeeeEEEcc-CCCEEEEEeCCCeEEEEeCCC------
Q 042146          103 VFCINFNPQSNRIVSDTFNETIRIWDIKTGKC--LKVLPAHSDPVTAIDFNR-DGTMIVTSSYDGLYRILDAST------  173 (262)
Q Consensus       103 v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~--~~~~~~~~~~v~~~~~~~-~~~~l~~~~~dg~i~~~d~~~------  173 (262)
                      ..++.|++.+..++++..+|.+.+-+......  ++..+.|.-+.+-..|+. +.+++++|+.|+.+..||+|.      
T Consensus       124 ~lslD~~~~~~~i~vs~s~G~~~~v~~t~~~le~vq~wk~He~E~Wta~f~~~~pnlvytGgDD~~l~~~D~R~p~~~i~  203 (339)
T KOG0280|consen  124 ALSLDISTSGTKIFVSDSRGSISGVYETEMVLEKVQTWKVHEFEAWTAKFSDKEPNLVYTGGDDGSLSCWDIRIPKTFIW  203 (339)
T ss_pred             eeEEEeeccCceEEEEcCCCcEEEEecceeeeeecccccccceeeeeeecccCCCceEEecCCCceEEEEEecCCcceee
Confidence            45788899999999999999999666554443  347889999999999987 567999999999999999993      


Q ss_pred             -----------------CCccEEEEEcCCCeEEEEecC-CCceeeEEe
Q 042146          174 -----------------PNGKFILVGTLDNTLRLWNYS-TRKILKTYS  203 (262)
Q Consensus       174 -----------------~~~~~l~~~~~dg~i~i~d~~-~~~~~~~~~  203 (262)
                                       |.+.++++|+.|..|++||.+ .++++..-+
T Consensus       204 ~n~kvH~~GV~SI~ss~~~~~~I~TGsYDe~i~~~DtRnm~kPl~~~~  251 (339)
T KOG0280|consen  204 HNSKVHTSGVVSIYSSPPKPTYIATGSYDECIRVLDTRNMGKPLFKAK  251 (339)
T ss_pred             ecceeeecceEEEecCCCCCceEEEeccccceeeeehhcccCccccCc
Confidence                             677899999999999999999 466665443

>KOG1912 consensus WD40 repeat protein [General function prediction only]

Probab=99.17  E-value=1.4e-08  Score=83.58  Aligned_cols=128  Identities=16%  Similarity=0.221  Sum_probs=101.5

Q ss_pred             cccccceecccCcCceEEEEEccCC------------CeEEEecCCCeEEEeecCCCCCCCCCCCCCCccccCCcccccc
Q 042146           11 RPYTLTQTLNGHLRAVSYVKFSHDG------------RLLTSSSAEKTLLTYSLSSISNFDSTPPSPLQKFTGHEQGISD   78 (262)
Q Consensus        11 ~~~~~~~~~~~h~~~v~~~~~~~~~------------~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~   78 (262)
                      ..++.++.++.|+..|+.+.|.|..            -.||++...|.|.+|                            
T Consensus        43 ~s~q~iqsie~h~s~V~~VrWap~~~p~~llS~~~~~lliAsaD~~GrIil~----------------------------   94 (1062)
T KOG1912|consen   43 RSLQLIQSIELHQSAVTSVRWAPAPSPRDLLSPSSSQLLIASADISGRIILV----------------------------   94 (1062)
T ss_pred             hhhhhhhccccCccceeEEEeccCCCchhccCccccceeEEeccccCcEEEE----------------------------
Confidence            4678899999999999999998732            256666677777666                            


Q ss_pred             ceeEEEEecCCCccceecccCCcceEEEEEeC---CC-CEEEeecCCCeEEEEECCCCeeeeeeecCCCCeeeEEEcc-C
Q 042146           79 LATIRLWDVPTATSLKTLIGHTNYVFCINFNP---QS-NRIVSDTFNETIRIWDIKTGKCLKVLPAHSDPVTAIDFNR-D  153 (262)
Q Consensus        79 ~~~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~---~~-~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~-~  153 (262)
                             |...+..+..+..|..++..++|-|   +. ..|++-....+|.+|+..+|+..+..........|+.+.| |
T Consensus        95 -------d~~~~s~~~~l~~~~~~~qdl~W~~~rd~Srd~LlaIh~ss~lvLwntdtG~k~Wk~~ys~~iLs~f~~DPfd  167 (1062)
T KOG1912|consen   95 -------DFVLASVINWLSHSNDSVQDLCWVPARDDSRDVLLAIHGSSTLVLWNTDTGEKFWKYDYSHEILSCFRVDPFD  167 (1062)
T ss_pred             -------EehhhhhhhhhcCCCcchhheeeeeccCcchheeEEecCCcEEEEEEccCCceeeccccCCcceeeeeeCCCC
Confidence                   4455666667777888999999977   33 4567777778999999999999999887777888899999 8


Q ss_pred             CCEEEEEeCCCeEEEEeCCC
Q 042146          154 GTMIVTSSYDGLYRILDAST  173 (262)
Q Consensus       154 ~~~l~~~~~dg~i~~~d~~~  173 (262)
                      .+++..-+..|.+.+.+...
T Consensus       168 ~rh~~~l~s~g~vl~~~~l~  187 (1062)
T KOG1912|consen  168 SRHFCVLGSKGFVLSCKDLG  187 (1062)
T ss_pred             cceEEEEccCceEEEEeccC
Confidence            88888888888888777543

>COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]

Probab=99.16  E-value=4.5e-09  Score=77.58  Aligned_cols=179  Identities=19%  Similarity=0.373  Sum_probs=119.5

Q ss_pred             CcCceEEEEEccCCCeEEEecCCCeEEEeecCCCCCCCCCCCCCCccccCCcccc-------------------------
Q 042146           22 HLRAVSYVKFSHDGRLLTSSSAEKTLLTYSLSSISNFDSTPPSPLQKFTGHEQGI-------------------------   76 (262)
Q Consensus        22 h~~~v~~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v-------------------------   76 (262)
                      ....|+++.|...|.||++|...|.|.++.-+....-   .......+++|....                         
T Consensus        25 ead~ItaVefd~tg~YlatGDkgGRVvlfer~~s~~c---eykf~teFQshe~EFDYLkSleieEKin~I~w~~~t~r~h  101 (460)
T COG5170          25 EADKITAVEFDETGLYLATGDKGGRVVLFEREKSYGC---EYKFFTEFQSHELEFDYLKSLEIEEKINAIEWFDDTGRNH  101 (460)
T ss_pred             ccceeeEEEeccccceEeecCCCceEEEeeccccccc---chhhhhhhcccccchhhhhhccHHHHhhheeeecCCCcce
Confidence            3466999999999999999999999999976543210   011112222222211                         


Q ss_pred             ----ccceeEEEEecCCC-------------------cccee-----------------------c-ccCCcceEEEEEe
Q 042146           77 ----SDLATIRLWDVPTA-------------------TSLKT-----------------------L-IGHTNYVFCINFN  109 (262)
Q Consensus        77 ----~~~~~i~v~d~~~~-------------------~~~~~-----------------------~-~~~~~~v~~~~~~  109 (262)
                          ....+|++|.+...                   .++.+                       . ..|..-|+++.++
T Consensus       102 FLlstNdktiKlWKiyeknlk~va~nnls~~~~~~~~g~~~s~~~l~lprls~hd~iiaa~p~rvyaNaH~yhiNSiS~N  181 (460)
T COG5170         102 FLLSTNDKTIKLWKIYEKNLKVVAENNLSDSFHSPMGGPLTSTKELLLPRLSEHDEIIAAKPCRVYANAHPYHINSISFN  181 (460)
T ss_pred             EEEecCCceeeeeeeecccchhhhccccccccccccCCCcCCHHHhhcccccccceEEEeccceeccccceeEeeeeeec
Confidence                11228999987432                   01000                       0 2466678899999


Q ss_pred             CCCCEEEeecCCCeEEEEECCCCe---eeeeeecCC-----CCeeeEEEccCC-CEEEEEeCCCeEEEEeCCC-------
Q 042146          110 PQSNRIVSDTFNETIRIWDIKTGK---CLKVLPAHS-----DPVTAIDFNRDG-TMIVTSSYDGLYRILDAST-------  173 (262)
Q Consensus       110 ~~~~~l~~~~~dg~i~vwd~~~~~---~~~~~~~~~-----~~v~~~~~~~~~-~~l~~~~~dg~i~~~d~~~-------  173 (262)
                      .|...++++. |-.|.+|+++-..   .+..++.|.     .-|++..|+|.. ..+.-.+..|.|++-|+|.       
T Consensus       182 sD~et~lSaD-dLrINLWnl~i~D~sFnIVDiKP~nmeeLteVItSaeFhp~~cn~fmYSsSkG~Ikl~DlRq~alcdn~  260 (460)
T COG5170         182 SDKETLLSAD-DLRINLWNLEIIDGSFNIVDIKPHNMEELTEVITSAEFHPEMCNVFMYSSSKGEIKLNDLRQSALCDNS  260 (460)
T ss_pred             Cchheeeecc-ceeeeeccccccCCceEEEeccCccHHHHHHHHhhcccCHhHcceEEEecCCCcEEehhhhhhhhccCc
Confidence            8888888765 7789999986321   233344454     358899999944 5677778899999999995       


Q ss_pred             -----------------------------CCccEEEEEcCCCeEEEEecCC-CceeeEEecc
Q 042146          174 -----------------------------PNGKFILVGTLDNTLRLWNYST-RKILKTYSGY  205 (262)
Q Consensus       174 -----------------------------~~~~~l~~~~~dg~i~i~d~~~-~~~~~~~~~~  205 (262)
                                                   ++|+++++-+. -+++|||.+. ..++.+++-|
T Consensus       261 ~klfe~~~D~v~~~ff~eivsSISD~kFs~ngryIlsRdy-ltvkiwDvnm~k~pikTi~~h  321 (460)
T COG5170         261 KKLFELTIDGVDVDFFEEIVSSISDFKFSDNGRYILSRDY-LTVKIWDVNMAKNPIKTIPMH  321 (460)
T ss_pred             hhhhhhccCcccchhHHHHhhhhcceEEcCCCcEEEEecc-ceEEEEecccccCCceeechH
Confidence                                         67778876653 5799999986 4567776543

>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]

Probab=99.16  E-value=2.8e-08  Score=77.95  Aligned_cols=132  Identities=12%  Similarity=0.215  Sum_probs=92.5

Q ss_pred             EEEEEeCCCCEEEeec-----------CCCeEEEEECCCCeeeeeeecCCCCeeeEEEccCCCEEEEEe--CCCeEEEEe
Q 042146          104 FCINFNPQSNRIVSDT-----------FNETIRIWDIKTGKCLKVLPAHSDPVTAIDFNRDGTMIVTSS--YDGLYRILD  170 (262)
Q Consensus       104 ~~~~~~~~~~~l~~~~-----------~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~--~dg~i~~~d  170 (262)
                      ..+.|++.|++++.--           ....+++++++.....-.. .-.++|...+|.|.++.+++.+  .+..+.++|
T Consensus       226 ~qLkW~~~g~~ll~l~~t~~ksnKsyfgesnLyl~~~~e~~i~V~~-~~~~pVhdf~W~p~S~~F~vi~g~~pa~~s~~~  304 (561)
T COG5354         226 VQLKWQVLGKYLLVLVMTHTKSNKSYFGESNLYLLRITERSIPVEK-DLKDPVHDFTWEPLSSRFAVISGYMPASVSVFD  304 (561)
T ss_pred             cEEEEecCCceEEEEEEEeeecccceeccceEEEEeecccccceec-cccccceeeeecccCCceeEEecccccceeecc
Confidence            3577888888765321           1245788887744433222 5588999999999888776655  677888888


Q ss_pred             CCC-----------------CCccEEEEEcCC---CeEEEEecCCCceee-EEeccCCceeEEEEEEecCCCeeEEcccc
Q 042146          171 AST-----------------PNGKFILVGTLD---NTLRLWNYSTRKILK-TYSGYTNSKYCISSTFSVTNGKYIVSHRD  229 (262)
Q Consensus       171 ~~~-----------------~~~~~l~~~~~d---g~i~i~d~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  229 (262)
                      ++.                 |.+++++.++-+   |.+.+||......+. .+.+                        .
T Consensus       305 lr~Nl~~~~Pe~~rNT~~fsp~~r~il~agF~nl~gni~i~~~~~rf~~~~~~~~------------------------~  360 (561)
T COG5354         305 LRGNLRFYFPEQKRNTIFFSPHERYILFAGFDNLQGNIEIFDPAGRFKVAGAFNG------------------------L  360 (561)
T ss_pred             cccceEEecCCcccccccccCcccEEEEecCCccccceEEeccCCceEEEEEeec------------------------C
Confidence            876                 678888886644   789999987654443 4433                        2


Q ss_pred             ceEEEEEcCCCCeEEEeee----cCCCcEEEEeec
Q 042146          230 PVISVASHPAKNIIASGAL----DNDRTMKIWTQE  260 (262)
Q Consensus       230 ~v~~~~~~p~~~~l~~~~~----d~d~~i~iw~~~  260 (262)
                      ...-+.|+|+++++.+...    ..|..|+||++.
T Consensus       361 n~s~~~wspd~qF~~~~~ts~k~~~Dn~i~l~~v~  395 (561)
T COG5354         361 NTSYCDWSPDGQFYDTDTTSEKLRVDNSIKLWDVY  395 (561)
T ss_pred             CceEeeccCCceEEEecCCCcccccCcceEEEEec
Confidence            3456789999998877641    137899999985

>KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair]

Probab=99.16  E-value=3.5e-09  Score=88.35  Aligned_cols=154  Identities=14%  Similarity=0.242  Sum_probs=112.0

Q ss_pred             eEEEEecCCCccceecccCCcceEEEEEeCCCCEEEeecCCCeEEEEECCCCeeeeeeecCCCCeeeEEEccCCCEEEEE
Q 042146           81 TIRLWDVPTATSLKTLIGHTNYVFCINFNPQSNRIVSDTFNETIRIWDIKTGKCLKVLPAHSDPVTAIDFNRDGTMIVTS  160 (262)
Q Consensus        81 ~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~  160 (262)
                      .+..+|+.+.+..+...-....|.-|+.  +++++.+|...|+|.+-|+++.+.++++.+|.+.|.++..  .|+.|++|
T Consensus       158 ~li~~Dl~~~~e~r~~~v~a~~v~imR~--Nnr~lf~G~t~G~V~LrD~~s~~~iht~~aHs~siSDfDv--~GNlLitC  233 (1118)
T KOG1275|consen  158 KLIHIDLNTEKETRTTNVSASGVTIMRY--NNRNLFCGDTRGTVFLRDPNSFETIHTFDAHSGSISDFDV--QGNLLITC  233 (1118)
T ss_pred             heeeeecccceeeeeeeccCCceEEEEe--cCcEEEeecccceEEeecCCcCceeeeeeccccceeeeec--cCCeEEEe
Confidence            4566677666655544433334555554  5889999999999999999999999999999999988765  48899999


Q ss_pred             eC---------CCeEEEEeCCC-------------------C-CccEEEEEcCCCeEEEEecCC-Cce-eeEEeccCCce
Q 042146          161 SY---------DGLYRILDAST-------------------P-NGKFILVGTLDNTLRLWNYST-RKI-LKTYSGYTNSK  209 (262)
Q Consensus       161 ~~---------dg~i~~~d~~~-------------------~-~~~~l~~~~~dg~i~i~d~~~-~~~-~~~~~~~~~~~  209 (262)
                      +.         |..|++||+|.                   | =...+++.+..|...+-|..+ ..+ ...+..+    
T Consensus       234 G~S~R~~~l~~D~FvkVYDLRmmral~PI~~~~~P~flrf~Psl~t~~~V~S~sGq~q~vd~~~lsNP~~~~~~v~----  309 (1118)
T KOG1275|consen  234 GYSMRRYNLAMDPFVKVYDLRMMRALSPIQFPYGPQFLRFHPSLTTRLAVTSQSGQFQFVDTATLSNPPAGVKMVN----  309 (1118)
T ss_pred             ecccccccccccchhhhhhhhhhhccCCcccccCchhhhhcccccceEEEEecccceeeccccccCCCccceeEEc----
Confidence            86         45678888887                   1 134577777778887777332 111 1111111    


Q ss_pred             eEEEEEEecCCCeeEEccccceEEEEEcCCCCeEEEeeecCCCcEEEEeec
Q 042146          210 YCISSTFSVTNGKYIVSHRDPVISVASHPAKNIIASGALDNDRTMKIWTQE  260 (262)
Q Consensus       210 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~d~d~~i~iw~~~  260 (262)
                                      .....+..+.++++++.++.|.  .+|.|.+|.-.
T Consensus       310 ----------------p~~s~i~~fDiSsn~~alafgd--~~g~v~~wa~~  342 (1118)
T KOG1275|consen  310 ----------------PNGSGISAFDISSNGDALAFGD--HEGHVNLWADR  342 (1118)
T ss_pred             ----------------cCCCcceeEEecCCCceEEEec--ccCcEeeecCC
Confidence                            1445589999999999999999  89999999743

>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=99.15  E-value=2.1e-10  Score=93.49  Aligned_cols=125  Identities=24%  Similarity=0.420  Sum_probs=90.9

Q ss_pred             cceecccCcCceEEEEEccCC-CeEEEecCCCeEEEeecCCCCCCCCCCCCCCccccCCccccccceeEEEEecCCCccc
Q 042146           15 LTQTLNGHLRAVSYVKFSHDG-RLLTSSSAEKTLLTYSLSSISNFDSTPPSPLQKFTGHEQGISDLATIRLWDVPTATSL   93 (262)
Q Consensus        15 ~~~~~~~h~~~v~~~~~~~~~-~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~i~v~d~~~~~~~   93 (262)
                      ....+.+|..+|+.+-|+|+. ..+++++.|-.+..||+....                                  .++
T Consensus       106 Ief~lhghsraitd~n~~~q~pdVlatcsvdt~vh~wd~rSp~----------------------------------~p~  151 (1081)
T KOG0309|consen  106 IEFVLHGHSRAITDINFNPQHPDVLATCSVDTYVHAWDMRSPH----------------------------------RPF  151 (1081)
T ss_pred             eEEEEecCccceeccccCCCCCcceeeccccccceeeeccCCC----------------------------------cce
Confidence            455678999999999999864 478999999999999775421                                  111


Q ss_pred             eecccCCcceEEEEEeCCCCEEEeecCCCeEEEEECCCC-eeeeeeecCCCCeeeEEEcc-CCCEEEEEeCCCeEEEEeC
Q 042146           94 KTLIGHTNYVFCINFNPQSNRIVSDTFNETIRIWDIKTG-KCLKVLPAHSDPVTAIDFNR-DGTMIVTSSYDGLYRILDA  171 (262)
Q Consensus        94 ~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~-~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~dg~i~~~d~  171 (262)
                      ..+..-......++|+-...-+.+.+....|++||++.+ .++..+++|...|+.++|.. -...+.+++.||+|+.||.
T Consensus       152 ys~~~w~s~asqVkwnyk~p~vlasshg~~i~vwd~r~gs~pl~s~K~~vs~vn~~~fnr~~~s~~~s~~~d~tvkfw~y  231 (1081)
T KOG0309|consen  152 YSTSSWRSAASQVKWNYKDPNVLASSHGNDIFVWDLRKGSTPLCSLKGHVSSVNSIDFNRFKYSEIMSSSNDGTVKFWDY  231 (1081)
T ss_pred             eeeecccccCceeeecccCcchhhhccCCceEEEeccCCCcceEEecccceeeehHHHhhhhhhhhcccCCCCceeeecc
Confidence            222222233445777764444555566778999999865 56778888999999999876 3346889999999999997


Q ss_pred             CC
Q 042146          172 ST  173 (262)
Q Consensus       172 ~~  173 (262)
                      ..
T Consensus       232 ~k  233 (1081)
T KOG0309|consen  232 SK  233 (1081)
T ss_pred             cc
Confidence            65

>KOG4190 consensus Uncharacterized conserved protein [Function unknown]

Probab=99.15  E-value=5.2e-10  Score=88.59  Aligned_cols=230  Identities=14%  Similarity=0.190  Sum_probs=150.7

Q ss_pred             CCCCceeeec---------ccccceecccCcCceEEEEEccCCCeEEEecCCCeEEEeecCCCCCC-------CCCCCCC
Q 042146            2 SSDRSLESFR---------PYTLTQTLNGHLRAVSYVKFSHDGRLLTSSSAEKTLLTYSLSSISNF-------DSTPPSP   65 (262)
Q Consensus         2 s~d~~i~~~~---------~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~-------~~~~~~~   65 (262)
                      |.|.+++.|.         +.....+++.|+++|.++.|-.+-++++++  ||.|.+||---....       .......
T Consensus       754 SkDKTVKLWSik~EgD~~~tsaCQfTY~aHkk~i~~igfL~~lr~i~Sc--D~giHlWDPFigr~Laq~~dapk~~a~~~  831 (1034)
T KOG4190|consen  754 SKDKTVKLWSIKPEGDEIGTSACQFTYQAHKKPIHDIGFLADLRSIASC--DGGIHLWDPFIGRLLAQMEDAPKEGAGGN  831 (1034)
T ss_pred             cCCceEEEEEeccccCccccceeeeEhhhccCcccceeeeeccceeeec--cCcceeecccccchhHhhhcCcccCCCce
Confidence            5788888885         122667899999999999999998888765  799999985332111       1111222


Q ss_pred             CccccCCcccc-----ccceeEEEEecCCCccceecc-----cCCcceEEEEEeCCCCEEEeecCCCeEEEEECCCCeee
Q 042146           66 LQKFTGHEQGI-----SDLATIRLWDVPTATSLKTLI-----GHTNYVFCINFNPQSNRIVSDTFNETIRIWDIKTGKCL  135 (262)
Q Consensus        66 ~~~~~~~~~~v-----~~~~~i~v~d~~~~~~~~~~~-----~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~  135 (262)
                      +..+..-...+     ..-.+|+++|.+..+....++     +..+.+.++++.|.|++++++-.+|+|.+.|.++|+.+
T Consensus       832 ikcl~nv~~~iliAgcsaeSTVKl~DaRsce~~~E~kVcna~~Pna~~R~iaVa~~GN~lAa~LSnGci~~LDaR~G~vI  911 (1034)
T KOG4190|consen  832 IKCLENVDRHILIAGCSAESTVKLFDARSCEWTCELKVCNAPGPNALTRAIAVADKGNKLAAALSNGCIAILDARNGKVI  911 (1034)
T ss_pred             eEecccCcchheeeeccchhhheeeecccccceeeEEeccCCCCchheeEEEeccCcchhhHHhcCCcEEEEecCCCcee
Confidence            33333312211     112289999998887666553     44577999999999999999999999999999999988


Q ss_pred             eeeecCCCCeeeEEEccCCCEEEEEeCCCeEEE-EeCCC------------------CCccEEEEEcCCCeEEEEecC-C
Q 042146          136 KVLPAHSDPVTAIDFNRDGTMIVTSSYDGLYRI-LDAST------------------PNGKFILVGTLDNTLRLWNYS-T  195 (262)
Q Consensus       136 ~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~-~d~~~------------------~~~~~l~~~~~dg~i~i~d~~-~  195 (262)
                      ...+.-.-....++ .|..+.|+....|.++.+ |....                  .-|.-|+++.....+.+|--. .
T Consensus       912 Nswrpmecdllqla-apsdq~L~~saldHslaVnWhaldgimh~q~kpppepahflqsvgpSLV~a~~Gn~lgVYad~a~  990 (1034)
T KOG4190|consen  912 NSWRPMECDLLQLA-APSDQALAQSALDHSLAVNWHALDGIMHLQDKPPPEPAHFLQSVGPSLVTAQNGNILGVYADSAE  990 (1034)
T ss_pred             ccCCcccchhhhhc-CchhHHHHhhcccceeEeeehhcCCeeeeccCCCCcchhhhhccCceeEEeccCcEEEEEecchh
Confidence            77654443333333 244455666666666666 64333                  245677777777777777421 1


Q ss_pred             Cc---eeeEEeccCCceeEEEEEEecCCCeeEEccccceEEEEEcCCCCeEEEeeecCCCcEEE
Q 042146          196 RK---ILKTYSGYTNSKYCISSTFSVTNGKYIVSHRDPVISVASHPAKNIIASGALDNDRTMKI  256 (262)
Q Consensus       196 ~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~d~d~~i~i  256 (262)
                      ..   .+..++..+                    ..+..++++--|-+.-+..|.  +.|.|.+
T Consensus       991 ~ha~stitKiR~d~--------------------f~G~lTala~LPLN~afLaGn--e~G~IaL 1032 (1034)
T KOG4190|consen  991 LHAESTITKIRPDE--------------------FPGTLTALAPLPLNCAFLAGN--EHGAIAL 1032 (1034)
T ss_pred             hhhhhhhccccccc--------------------cCCccceeeeccccchhhccC--CCCceee
Confidence            11   111222111                    445677888888777777777  7788875

>KOG2695 consensus WD40 repeat protein [General function prediction only]

Probab=99.15  E-value=2.2e-10  Score=85.29  Aligned_cols=122  Identities=20%  Similarity=0.280  Sum_probs=100.0

Q ss_pred             eEEEEecCCCccceecccCCcceEEEEEeCCCCEEEeecCCCeEEEEECCCC-----eeeeeeecCCCCeeeEEEcc-CC
Q 042146           81 TIRLWDVPTATSLKTLIGHTNYVFCINFNPQSNRIVSDTFNETIRIWDIKTG-----KCLKVLPAHSDPVTAIDFNR-DG  154 (262)
Q Consensus        81 ~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~-----~~~~~~~~~~~~v~~~~~~~-~~  154 (262)
                      .+.+-|++++... .+. .++.|.++.|+..++++..|+.+|.|..+|++.+     .+.+.+ .|.+.|+++..-. ++
T Consensus       235 qv~L~nvetg~~q-sf~-sksDVfAlQf~~s~nLv~~GcRngeI~~iDLR~rnqG~~~~a~rl-yh~Ssvtslq~Lq~s~  311 (425)
T KOG2695|consen  235 QVLLTNVETGHQQ-SFQ-SKSDVFALQFAGSDNLVFNGCRNGEIFVIDLRCRNQGNGWCAQRL-YHDSSVTSLQILQFSQ  311 (425)
T ss_pred             eeEEEEeeccccc-ccc-cchhHHHHHhcccCCeeEecccCCcEEEEEeeecccCCCcceEEE-EcCcchhhhhhhcccc
Confidence            5556666655332 222 5677889999988999999999999999999865     344555 4899999998877 78


Q ss_pred             CEEEEEeCCCeEEEEeCCC-------------------------CCccEEEEEcCCCeEEEEecCCCceeeEEecc
Q 042146          155 TMIVTSSYDGLYRILDAST-------------------------PNGKFILVGTLDNTLRLWNYSTRKILKTYSGY  205 (262)
Q Consensus       155 ~~l~~~~~dg~i~~~d~~~-------------------------~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~  205 (262)
                      .+|.+.+.+|+|++||+|.                         +....+++++.|...+||.++.|+++.+++..
T Consensus       312 q~LmaS~M~gkikLyD~R~~K~~~~V~qYeGHvN~~a~l~~~v~~eeg~I~s~GdDcytRiWsl~~ghLl~tipf~  387 (425)
T KOG2695|consen  312 QKLMASDMTGKIKLYDLRATKCKKSVMQYEGHVNLSAYLPAHVKEEEGSIFSVGDDCYTRIWSLDSGHLLCTIPFP  387 (425)
T ss_pred             ceEeeccCcCceeEeeehhhhcccceeeeecccccccccccccccccceEEEccCeeEEEEEecccCceeeccCCC
Confidence            8999999999999999986                         56678888999999999999999999988753

>KOG2321 consensus WD40 repeat protein [General function prediction only]

Probab=99.14  E-value=1.8e-09  Score=85.59  Aligned_cols=158  Identities=13%  Similarity=0.227  Sum_probs=112.6

Q ss_pred             cccccceecccCcCceEEEEEccCCCeEEEecCCCeEEEeecCCCCCCCCCCCCCCccccCCccccccceeEEEEecCCC
Q 042146           11 RPYTLTQTLNGHLRAVSYVKFSHDGRLLTSSSAEKTLLTYSLSSISNFDSTPPSPLQKFTGHEQGISDLATIRLWDVPTA   90 (262)
Q Consensus        11 ~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~i~v~d~~~~   90 (262)
                      +.+..+..|..-.++++++..++...+|++|+.+|.|..||......                        +...+....
T Consensus       163 EqGrfL~P~~~~~~~lN~v~in~~hgLla~Gt~~g~VEfwDpR~ksr------------------------v~~l~~~~~  218 (703)
T KOG2321|consen  163 EQGRFLNPFETDSGELNVVSINEEHGLLACGTEDGVVEFWDPRDKSR------------------------VGTLDAASS  218 (703)
T ss_pred             cccccccccccccccceeeeecCccceEEecccCceEEEecchhhhh------------------------heeeecccc
Confidence            35667777777779999999999999999999999999997644211                        111222211


Q ss_pred             ccceecccCCcceEEEEEeCCCCEEEeecCCCeEEEEECCCCeeeeeeecC--CCCeeeEEEccC--CCEEEEEeCCCeE
Q 042146           91 TSLKTLIGHTNYVFCINFNPQSNRIVSDTFNETIRIWDIKTGKCLKVLPAH--SDPVTAIDFNRD--GTMIVTSSYDGLY  166 (262)
Q Consensus        91 ~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~--~~~v~~~~~~~~--~~~l~~~~~dg~i  166 (262)
                      -.-.........|++++|+.+|-.+++|+.+|.+.|||+++.+++..- .|  ..+|..+.|.+.  ++.+++ .....+
T Consensus       219 v~s~pg~~~~~svTal~F~d~gL~~aVGts~G~v~iyDLRa~~pl~~k-dh~~e~pi~~l~~~~~~~q~~v~S-~Dk~~~  296 (703)
T KOG2321|consen  219 VNSHPGGDAAPSVTALKFRDDGLHVAVGTSTGSVLIYDLRASKPLLVK-DHGYELPIKKLDWQDTDQQNKVVS-MDKRIL  296 (703)
T ss_pred             cCCCccccccCcceEEEecCCceeEEeeccCCcEEEEEcccCCceeec-ccCCccceeeecccccCCCceEEe-cchHHh
Confidence            111111122345999999988999999999999999999999887654 35  458999999875  334444 345689


Q ss_pred             EEEeCCC-------------------CCccEEEEEcCCCeEEEEecC
Q 042146          167 RILDAST-------------------PNGKFILVGTLDNTLRLWNYS  194 (262)
Q Consensus       167 ~~~d~~~-------------------~~~~~l~~~~~dg~i~i~d~~  194 (262)
                      ++||-..                   |++.+++++.+++.+..|=+.
T Consensus       297 kiWd~~~Gk~~asiEpt~~lND~C~~p~sGm~f~Ane~~~m~~yyiP  343 (703)
T KOG2321|consen  297 KIWDECTGKPMASIEPTSDLNDFCFVPGSGMFFTANESSKMHTYYIP  343 (703)
T ss_pred             hhcccccCCceeeccccCCcCceeeecCCceEEEecCCCcceeEEcc
Confidence            9999665                   677788888877776665444

>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation []

Probab=99.13  E-value=8.1e-08  Score=84.19  Aligned_cols=175  Identities=14%  Similarity=0.191  Sum_probs=104.2

Q ss_pred             eEEEEecCCCccceecccCCcceEEEEEeCCCCEEEeecC---CCeEEEEECCCCeeeeeee----cCCCCeeeEEEccC
Q 042146           81 TIRLWDVPTATSLKTLIGHTNYVFCINFNPQSNRIVSDTF---NETIRIWDIKTGKCLKVLP----AHSDPVTAIDFNRD  153 (262)
Q Consensus        81 ~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~---dg~i~vwd~~~~~~~~~~~----~~~~~v~~~~~~~~  153 (262)
                      .++||+-+ |.....-..-.+--.+++|-|.|+++|+...   ...|.+|. ++|-.-..|.    .....|..+.|+++
T Consensus       238 ~iRVy~Re-G~L~stSE~v~gLe~~l~WrPsG~lIA~~q~~~~~~~VvFfE-rNGLrhgeF~l~~~~~~~~v~~l~Wn~d  315 (928)
T PF04762_consen  238 VIRVYSRE-GELQSTSEPVDGLEGALSWRPSGNLIASSQRLPDRHDVVFFE-RNGLRHGEFTLRFDPEEEKVIELAWNSD  315 (928)
T ss_pred             EEEEECCC-ceEEeccccCCCccCCccCCCCCCEEEEEEEcCCCcEEEEEe-cCCcEeeeEecCCCCCCceeeEEEECCC
Confidence            77888864 4433333333344457899999999998764   34577776 4554433332    23568999999999


Q ss_pred             CCEEEEEeCCCeEEEEeCCC------------------------CCccEEEEEcCCCeEEEEecC----CCc--------
Q 042146          154 GTMIVTSSYDGLYRILDAST------------------------PNGKFILVGTLDNTLRLWNYS----TRK--------  197 (262)
Q Consensus       154 ~~~l~~~~~dg~i~~~d~~~------------------------~~~~~l~~~~~dg~i~i~d~~----~~~--------  197 (262)
                      +..|+....|. |.+|-..+                        .+...|...+.+|.+..+++.    .+.        
T Consensus       316 s~iLAv~~~~~-vqLWt~~NYHWYLKqei~~~~~~~~~~~~Wdpe~p~~L~v~t~~g~~~~~~~~~~v~~s~~~~~~D~g  394 (928)
T PF04762_consen  316 SEILAVWLEDR-VQLWTRSNYHWYLKQEIRFSSSESVNFVKWDPEKPLRLHVLTSNGQYEIYDFAWDVSRSPGSSPNDNG  394 (928)
T ss_pred             CCEEEEEecCC-ceEEEeeCCEEEEEEEEEccCCCCCCceEECCCCCCEEEEEecCCcEEEEEEEEEEEecCCCCccCce
Confidence            99999987665 99998776                        223445555555555444332    110        


Q ss_pred             eeeEEeccCCceeEEEEE-EecCCCeeEEccccceEEEEEcCCCCeEEEeeecCCCcEEEEeec
Q 042146          198 ILKTYSGYTNSKYCISST-FSVTNGKYIVSHRDPVISVASHPAKNIIASGALDNDRTMKIWTQE  260 (262)
Q Consensus       198 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~d~d~~i~iw~~~  260 (262)
                      .+..+.+..-.....+.+ ..++-...-.....+|.+++|++++..+++-.  .||.|.+|...
T Consensus       395 ~vaVIDG~~lllTpf~~a~VPPPMs~~~l~~~~~v~~vaf~~~~~~~avl~--~d~~l~~~~~~  456 (928)
T PF04762_consen  395 TVAVIDGNKLLLTPFRRAVVPPPMSSYELELPSPVNDVAFSPSNSRFAVLT--SDGSLSIYEWD  456 (928)
T ss_pred             EEEEEeCCeEEEecccccCCCchHhceEEcCCCCcEEEEEeCCCCeEEEEE--CCCCEEEEEec
Confidence            111111111111111111 11111112222567899999999998888887  89999999853

>PRK04043 tolB translocation protein TolB; Provisional

Probab=99.13  E-value=1.3e-07  Score=76.27  Aligned_cols=114  Identities=12%  Similarity=0.098  Sum_probs=70.7

Q ss_pred             ceEEEEEccCCCe-EEEecCCC-eEEEeecCCCCCCCCCCCCCCccccCCccccccceeEEEEecCCCccceecccCCcc
Q 042146           25 AVSYVKFSHDGRL-LTSSSAEK-TLLTYSLSSISNFDSTPPSPLQKFTGHEQGISDLATIRLWDVPTATSLKTLIGHTNY  102 (262)
Q Consensus        25 ~v~~~~~~~~~~~-l~s~~~d~-~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~i~v~d~~~~~~~~~~~~~~~~  102 (262)
                      ....-.|+|||+. ++..+.++ .-                                 .|.++|+.+++..... ...+.
T Consensus       189 ~~~~p~wSpDG~~~i~y~s~~~~~~---------------------------------~Iyv~dl~tg~~~~lt-~~~g~  234 (419)
T PRK04043        189 LNIFPKWANKEQTAFYYTSYGERKP---------------------------------TLYKYNLYTGKKEKIA-SSQGM  234 (419)
T ss_pred             CeEeEEECCCCCcEEEEEEccCCCC---------------------------------EEEEEECCCCcEEEEe-cCCCc
Confidence            6778889999874 55444331 21                                 2456677666543332 24455


Q ss_pred             eEEEEEeCCCCEEEe-ecC--CCeEEEEECCCCeeeeeeecCCCCeeeEEEccCCCEEEEEeC-CC--eEEEEeCCC
Q 042146          103 VFCINFNPQSNRIVS-DTF--NETIRIWDIKTGKCLKVLPAHSDPVTAIDFNRDGTMIVTSSY-DG--LYRILDAST  173 (262)
Q Consensus       103 v~~~~~~~~~~~l~~-~~~--dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-dg--~i~~~d~~~  173 (262)
                      .....|+|||+.++. .+.  +..|.++|+.+++. ..+..+........|+|||+.|+..+. .+  .|.+.|+..
T Consensus       235 ~~~~~~SPDG~~la~~~~~~g~~~Iy~~dl~~g~~-~~LT~~~~~d~~p~~SPDG~~I~F~Sdr~g~~~Iy~~dl~~  310 (419)
T PRK04043        235 LVVSDVSKDGSKLLLTMAPKGQPDIYLYDTNTKTL-TQITNYPGIDVNGNFVEDDKRIVFVSDRLGYPNIFMKKLNS  310 (419)
T ss_pred             EEeeEECCCCCEEEEEEccCCCcEEEEEECCCCcE-EEcccCCCccCccEECCCCCEEEEEECCCCCceEEEEECCC
Confidence            667789999987654 333  35788889887764 334334433455689999987766653 33  466666654

>PRK04792 tolB translocation protein TolB; Provisional

Probab=99.12  E-value=2e-08  Score=81.90  Aligned_cols=153  Identities=18%  Similarity=0.214  Sum_probs=94.1

Q ss_pred             eEEEEecCCCccceecccCCcceEEEEEeCCCCEEEeecC-C--CeEEEEECCCCeeeeeeecCCCCeeeEEEccCCCEE
Q 042146           81 TIRLWDVPTATSLKTLIGHTNYVFCINFNPQSNRIVSDTF-N--ETIRIWDIKTGKCLKVLPAHSDPVTAIDFNRDGTMI  157 (262)
Q Consensus        81 ~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-d--g~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l  157 (262)
                      .|.++|..... .+.+..+...+.+..|+|||+.|+..+. +  ..|.+||+.+++... +....+.....+|+|||+.|
T Consensus       199 ~l~i~d~dG~~-~~~l~~~~~~~~~p~wSPDG~~La~~s~~~g~~~L~~~dl~tg~~~~-lt~~~g~~~~~~wSPDG~~L  276 (448)
T PRK04792        199 QLMIADYDGYN-EQMLLRSPEPLMSPAWSPDGRKLAYVSFENRKAEIFVQDIYTQVREK-VTSFPGINGAPRFSPDGKKL  276 (448)
T ss_pred             EEEEEeCCCCC-ceEeecCCCcccCceECCCCCEEEEEEecCCCcEEEEEECCCCCeEE-ecCCCCCcCCeeECCCCCEE
Confidence            45555654332 2334445667889999999998876543 2  368999998876432 22223344578999999977


Q ss_pred             EE-EeCCCe--EEEEeCCC-------------------CCccEEEEEcC-CC--eEEEEecCCCceeeEEeccCCceeEE
Q 042146          158 VT-SSYDGL--YRILDAST-------------------PNGKFILVGTL-DN--TLRLWNYSTRKILKTYSGYTNSKYCI  212 (262)
Q Consensus       158 ~~-~~~dg~--i~~~d~~~-------------------~~~~~l~~~~~-dg--~i~i~d~~~~~~~~~~~~~~~~~~~~  212 (262)
                      +. .+.+|.  |.++|+.+                   |+++.++..+. ++  .|+++|+.+++.... ..        
T Consensus       277 a~~~~~~g~~~Iy~~dl~tg~~~~lt~~~~~~~~p~wSpDG~~I~f~s~~~g~~~Iy~~dl~~g~~~~L-t~--------  347 (448)
T PRK04792        277 ALVLSKDGQPEIYVVDIATKALTRITRHRAIDTEPSWHPDGKSLIFTSERGGKPQIYRVNLASGKVSRL-TF--------  347 (448)
T ss_pred             EEEEeCCCCeEEEEEECCCCCeEECccCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCEEEE-ec--------
Confidence            65 456664  77777654                   67776665543 33  466667766654322 11        


Q ss_pred             EEEEecCCCeeEEccccceEEEEEcCCCCeEEEeeecCCCcEEEEee
Q 042146          213 SSTFSVTNGKYIVSHRDPVISVASHPAKNIIASGALDNDRTMKIWTQ  259 (262)
Q Consensus       213 ~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~d~d~~i~iw~~  259 (262)
                                    ........+|+|+|+.|+..+. .++..+||-+
T Consensus       348 --------------~g~~~~~~~~SpDG~~l~~~~~-~~g~~~I~~~  379 (448)
T PRK04792        348 --------------EGEQNLGGSITPDGRSMIMVNR-TNGKFNIARQ  379 (448)
T ss_pred             --------------CCCCCcCeeECCCCCEEEEEEe-cCCceEEEEE
Confidence                          1112234689999998887763 2455555443

>KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]

Probab=99.12  E-value=1.6e-09  Score=83.61  Aligned_cols=204  Identities=20%  Similarity=0.226  Sum_probs=148.1

Q ss_pred             CCCCceeeecccc-----cceecccCcCceEEEEEccCCCeEEEecC-CCeEEEeecCCCCCCCCCC----CCCCccccC
Q 042146            2 SSDRSLESFRPYT-----LTQTLNGHLRAVSYVKFSHDGRLLTSSSA-EKTLLTYSLSSISNFDSTP----PSPLQKFTG   71 (262)
Q Consensus         2 s~d~~i~~~~~~~-----~~~~~~~h~~~v~~~~~~~~~~~l~s~~~-d~~i~iw~~~~~~~~~~~~----~~~~~~~~~   71 (262)
                      |.||.++.|.+-.     .+..+..|.+.|.+++.+-++..+.|.+. |..++++|+++........    +........
T Consensus        27 SlDGh~KFWkKs~isGvEfVKhFraHL~~I~sl~~S~dg~L~~Sv~d~Dhs~KvfDvEn~DminmiKL~~lPg~a~wv~s  106 (558)
T KOG0882|consen   27 SLDGHKKFWKKSRISGVEFVKHFRAHLGVILSLAVSYDGWLFRSVEDPDHSVKVFDVENFDMINMIKLVDLPGFAEWVTS  106 (558)
T ss_pred             ecchhhhhcCCCCccceeehhhhHHHHHHHHhhhccccceeEeeccCcccceeEEEeeccchhhhcccccCCCceEEecC
Confidence            4688888887544     66777889999999999999999999887 9999999998754332221    111111222


Q ss_pred             Cccccccce-------eEEEEecCCCc--cceecccCCcceEEEEEeCCCCEEEeecCCCeEEEEECCC------Ceee-
Q 042146           72 HEQGISDLA-------TIRLWDVPTAT--SLKTLIGHTNYVFCINFNPQSNRIVSDTFNETIRIWDIKT------GKCL-  135 (262)
Q Consensus        72 ~~~~v~~~~-------~i~v~d~~~~~--~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~------~~~~-  135 (262)
                      ....+..++       .+.++|-....  ....-.-|..+|.++.++|.+..+++....|.|.-|..+.      .+.. 
T Consensus       107 kGd~~s~IAVs~~~sg~i~VvD~~~d~~q~~~fkklH~sPV~~i~y~qa~Ds~vSiD~~gmVEyWs~e~~~qfPr~~l~~  186 (558)
T KOG0882|consen  107 KGDKISLIAVSLFKSGKIFVVDGFGDFCQDGYFKKLHFSPVKKIRYNQAGDSAVSIDISGMVEYWSAEGPFQFPRTNLNF  186 (558)
T ss_pred             CCCeeeeEEeecccCCCcEEECCcCCcCccceecccccCceEEEEeeccccceeeccccceeEeecCCCcccCccccccc
Confidence            222222222       56677754433  2223345889999999999999999999999999998862      1111 


Q ss_pred             --------eeeecCCCCeeeEEEccCCCEEEEEeCCCeEEEEeCCC----------------------------------
Q 042146          136 --------KVLPAHSDPVTAIDFNRDGTMIVTSSYDGLYRILDAST----------------------------------  173 (262)
Q Consensus       136 --------~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~d~~~----------------------------------  173 (262)
                              ..+...+....++.|+|++..+.+-+.|..|++++.++                                  
T Consensus       187 ~~K~eTdLy~f~K~Kt~pts~Efsp~g~qistl~~DrkVR~F~~KtGklvqeiDE~~t~~~~q~ks~y~l~~VelgRRma  266 (558)
T KOG0882|consen  187 ELKHETDLYGFPKAKTEPTSFEFSPDGAQISTLNPDRKVRGFVFKTGKLVQEIDEVLTDAQYQPKSPYGLMHVELGRRMA  266 (558)
T ss_pred             cccccchhhcccccccCccceEEccccCcccccCcccEEEEEEeccchhhhhhhccchhhhhccccccccceeehhhhhh
Confidence                    11222345678999999999999999999999999876                                  


Q ss_pred             -------------------CCccEEEEEcCCCeEEEEecCCCceeeEEeccC
Q 042146          174 -------------------PNGKFILVGTLDNTLRLWNYSTRKILKTYSGYT  206 (262)
Q Consensus       174 -------------------~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~  206 (262)
                                         ..+++|+.|+-=| |++.++.++++++.+...+
T Consensus       267 verelek~~~~~~~~~~fdes~~flly~t~~g-ikvin~~tn~v~ri~gk~e  317 (558)
T KOG0882|consen  267 VERELEKHGSTVGTNAVFDESGNFLLYGTILG-IKVINLDTNTVVRILGKDE  317 (558)
T ss_pred             HHhhHhhhcCcccceeEEcCCCCEEEeeccee-EEEEEeecCeEEEEeccch
Confidence                               5688999888766 8999999999888876433

>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]

Probab=99.11  E-value=4.2e-09  Score=87.45  Aligned_cols=109  Identities=13%  Similarity=0.213  Sum_probs=84.1

Q ss_pred             EEEEEccCCCeEEEecC----CCeEEEeecCCCCCCCCCCCCCCccccCCccccccceeEEEEecCCCccceecccCCcc
Q 042146           27 SYVKFSHDGRLLTSSSA----EKTLLTYSLSSISNFDSTPPSPLQKFTGHEQGISDLATIRLWDVPTATSLKTLIGHTNY  102 (262)
Q Consensus        27 ~~~~~~~~~~~l~s~~~----d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~i~v~d~~~~~~~~~~~~~~~~  102 (262)
                      +-..|+|..++||+++-    .|.|.||                                    .++|++..... -.-.
T Consensus        19 ti~SWHPsePlfAVA~fS~er~GSVtIf------------------------------------adtGEPqr~Vt-~P~h   61 (1416)
T KOG3617|consen   19 TISSWHPSEPLFAVASFSPERGGSVTIF------------------------------------ADTGEPQRDVT-YPVH   61 (1416)
T ss_pred             cccccCCCCceeEEEEecCCCCceEEEE------------------------------------ecCCCCCcccc-ccee
Confidence            44678999999888763    4566655                                    13444332221 1122


Q ss_pred             eEEEEEeCCCCEEEeecCCCeEEEEECCCCeeeeeeecCCCCeeeEEEccCCCEEEEEeCCCeEEEEeCC
Q 042146          103 VFCINFNPQSNRIVSDTFNETIRIWDIKTGKCLKVLPAHSDPVTAIDFNRDGTMIVTSSYDGLYRILDAS  172 (262)
Q Consensus       103 v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~d~~  172 (262)
                      +++++|+|..-.|+.|-.-|.+.+|...+.+.-.....|..+|..+.|||+|..|+++..-|.+.+|...
T Consensus        62 atSLCWHpe~~vLa~gwe~g~~~v~~~~~~e~htv~~th~a~i~~l~wS~~G~~l~t~d~~g~v~lwr~d  131 (1416)
T KOG3617|consen   62 ATSLCWHPEEFVLAQGWEMGVSDVQKTNTTETHTVVETHPAPIQGLDWSHDGTVLMTLDNPGSVHLWRYD  131 (1416)
T ss_pred             hhhhccChHHHHHhhccccceeEEEecCCceeeeeccCCCCCceeEEecCCCCeEEEcCCCceeEEEEee
Confidence            5679999998899999999999999988777666667799999999999999999999999999999865

>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide

Probab=99.08  E-value=7.3e-10  Score=57.60  Aligned_cols=39  Identities=33%  Similarity=0.753  Sum_probs=36.4

Q ss_pred             CeeeeeeecCCCCeeeEEEccCCCEEEEEeCCCeEEEEe
Q 042146          132 GKCLKVLPAHSDPVTAIDFNRDGTMIVTSSYDGLYRILD  170 (262)
Q Consensus       132 ~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~d  170 (262)
                      ++++..+.+|.++|++|+|+|++.+|++++.|+.|++||
T Consensus         1 g~~~~~~~~h~~~i~~i~~~~~~~~~~s~~~D~~i~vwd   39 (39)
T PF00400_consen    1 GKCVRTFRGHSSSINSIAWSPDGNFLASGSSDGTIRVWD   39 (39)
T ss_dssp             EEEEEEEESSSSSEEEEEEETTSSEEEEEETTSEEEEEE
T ss_pred             CeEEEEEcCCCCcEEEEEEecccccceeeCCCCEEEEEC
Confidence            367889999999999999999999999999999999997

WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....

>KOG4547 consensus WD40 repeat-containing protein [General function prediction only]

Probab=99.06  E-value=1.5e-08  Score=80.58  Aligned_cols=132  Identities=14%  Similarity=0.213  Sum_probs=103.3

Q ss_pred             Cceeeec--ccccceec--ccCcCceEEEEEccCCCeEEEecCCCeEEEeecCCCCCCCCCCCCCCccccCCccccccce
Q 042146            5 RSLESFR--PYTLTQTL--NGHLRAVSYVKFSHDGRLLTSSSAEKTLLTYSLSSISNFDSTPPSPLQKFTGHEQGISDLA   80 (262)
Q Consensus         5 ~~i~~~~--~~~~~~~~--~~h~~~v~~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~   80 (262)
                      |.+..|.  ..++...+  ..|.+.|.++.++.+-..|.+++.|+.+..|+.                            
T Consensus        80 g~v~~ys~~~g~it~~~st~~h~~~v~~~~~~~~~~ciyS~~ad~~v~~~~~----------------------------  131 (541)
T KOG4547|consen   80 GSVLLYSVAGGEITAKLSTDKHYGNVNEILDAQRLGCIYSVGADLKVVYILE----------------------------  131 (541)
T ss_pred             ccEEEEEecCCeEEEEEecCCCCCcceeeecccccCceEecCCceeEEEEec----------------------------
Confidence            4455554  33444444  479999999999999999999999999888854                            


Q ss_pred             eEEEEecCCCccceecccCCcceEEEEEeCCCCEEEeecCCCeEEEEECCCCeeeeeeecCCCCeeeEEEccC-----CC
Q 042146           81 TIRLWDVPTATSLKTLIGHTNYVFCINFNPQSNRIVSDTFNETIRIWDIKTGKCLKVLPAHSDPVTAIDFNRD-----GT  155 (262)
Q Consensus        81 ~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~-----~~  155 (262)
                             ...+.++.+.+.+..+.+++.+||+..+++++  +.|++||+++.+.+..|.+|.++|.++.|-.+     |.
T Consensus       132 -------~~~~~~~~~~~~~~~~~sl~is~D~~~l~~as--~~ik~~~~~~kevv~~ftgh~s~v~t~~f~~~~~g~~G~  202 (541)
T KOG4547|consen  132 -------KEKVIIRIWKEQKPLVSSLCISPDGKILLTAS--RQIKVLDIETKEVVITFTGHGSPVRTLSFTTLIDGIIGK  202 (541)
T ss_pred             -------ccceeeeeeccCCCccceEEEcCCCCEEEecc--ceEEEEEccCceEEEEecCCCcceEEEEEEEeccccccc
Confidence                   34555556666677788999999999999987  68999999999999999999999999999876     66


Q ss_pred             EEEEE-eCCCeEEEEeCCC
Q 042146          156 MIVTS-SYDGLYRILDAST  173 (262)
Q Consensus       156 ~l~~~-~~dg~i~~~d~~~  173 (262)
                      +++++ ..+.-+.+|-+..
T Consensus       203 ~vLssa~~~r~i~~w~v~~  221 (541)
T KOG4547|consen  203 YVLSSAAAERGITVWVVEK  221 (541)
T ss_pred             eeeeccccccceeEEEEEc
Confidence            65554 4556677776544

>PLN02919 haloacid dehalogenase-like hydrolase family protein

Probab=99.06  E-value=1.9e-07  Score=83.28  Aligned_cols=146  Identities=14%  Similarity=0.242  Sum_probs=96.8

Q ss_pred             EEEEEeC-CCCEEEeecCCCeEEEEECCCCeeeeeeec---------------CCCCeeeEEEccCCCEEE-EEeCCCeE
Q 042146          104 FCINFNP-QSNRIVSDTFNETIRIWDIKTGKCLKVLPA---------------HSDPVTAIDFNRDGTMIV-TSSYDGLY  166 (262)
Q Consensus       104 ~~~~~~~-~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~---------------~~~~v~~~~~~~~~~~l~-~~~~dg~i  166 (262)
                      ..++++| ++.++++.+.++.|++||..++... .+.+               .-.....|+++|+++.|+ +-+.++.|
T Consensus       686 ~gVa~dp~~g~LyVad~~~~~I~v~d~~~g~v~-~~~G~G~~~~~~g~~~~~~~~~~P~GIavspdG~~LYVADs~n~~I  764 (1057)
T PLN02919        686 WDVCFEPVNEKVYIAMAGQHQIWEYNISDGVTR-VFSGDGYERNLNGSSGTSTSFAQPSGISLSPDLKELYIADSESSSI  764 (1057)
T ss_pred             eEEEEecCCCeEEEEECCCCeEEEEECCCCeEE-EEecCCccccCCCCccccccccCccEEEEeCCCCEEEEEECCCCeE
Confidence            5789999 5666677778899999998876532 2211               012346799999998554 55567899


Q ss_pred             EEEeCCC-----------------------------------------CCccEEEEEcCCCeEEEEecCCCceeeEEecc
Q 042146          167 RILDAST-----------------------------------------PNGKFILVGTLDNTLRLWNYSTRKILKTYSGY  205 (262)
Q Consensus       167 ~~~d~~~-----------------------------------------~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~  205 (262)
                      ++||+.+                                         +++..+++-..++.|++||..++...... +.
T Consensus       765 rv~D~~tg~~~~~~gg~~~~~~~l~~fG~~dG~g~~~~l~~P~Gvavd~dG~LYVADs~N~rIrviD~~tg~v~tia-G~  843 (1057)
T PLN02919        765 RALDLKTGGSRLLAGGDPTFSDNLFKFGDHDGVGSEVLLQHPLGVLCAKDGQIYVADSYNHKIKKLDPATKRVTTLA-GT  843 (1057)
T ss_pred             EEEECCCCcEEEEEecccccCcccccccCCCCchhhhhccCCceeeEeCCCcEEEEECCCCEEEEEECCCCeEEEEe-cc
Confidence            9998642                                         34566666677788888888766554322 21


Q ss_pred             CCceeEEEEEEecCCCeeEEccccceEEEEEcCCCCeEEEeeecCCCcEEEEeecc
Q 042146          206 TNSKYCISSTFSVTNGKYIVSHRDPVISVASHPAKNIIASGALDNDRTMKIWTQEK  261 (262)
Q Consensus       206 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~d~d~~i~iw~~~~  261 (262)
                      ...        ...++....+.-.....++++++|+++++-+  .++.|++|++++
T Consensus       844 G~~--------G~~dG~~~~a~l~~P~GIavd~dG~lyVaDt--~Nn~Irvid~~~  889 (1057)
T PLN02919        844 GKA--------GFKDGKALKAQLSEPAGLALGENGRLFVADT--NNSLIRYLDLNK  889 (1057)
T ss_pred             CCc--------CCCCCcccccccCCceEEEEeCCCCEEEEEC--CCCEEEEEECCC
Confidence            100        0011111222334678999999999888877  789999999864

>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=99.03  E-value=8.8e-09  Score=78.45  Aligned_cols=91  Identities=15%  Similarity=0.250  Sum_probs=77.6

Q ss_pred             EEEEecCCCccceecccCCcceEEEEEeCCCC-EEEeecCCCeEEEEECCCCeeeeeeecCCCCeeeEEEccCC-CEEEE
Q 042146           82 IRLWDVPTATSLKTLIGHTNYVFCINFNPQSN-RIVSDTFNETIRIWDIKTGKCLKVLPAHSDPVTAIDFNRDG-TMIVT  159 (262)
Q Consensus        82 i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~~  159 (262)
                      +++.+..+-+....+..+...|..++|+|..+ ++..++.+.+|+|.|+++...+..+..+ .++++++|.-+. ++++.
T Consensus       175 v~~l~~~~fkssq~lp~~g~~IrdlafSp~~~GLl~~asl~nkiki~dlet~~~vssy~a~-~~~wSC~wDlde~h~IYa  253 (463)
T KOG1645|consen  175 VQKLESHDFKSSQILPGEGSFIRDLAFSPFNEGLLGLASLGNKIKIMDLETSCVVSSYIAY-NQIWSCCWDLDERHVIYA  253 (463)
T ss_pred             eEEeccCCcchhhcccccchhhhhhccCccccceeeeeccCceEEEEecccceeeeheecc-CCceeeeeccCCcceeEE
Confidence            56666666666667778889999999999666 7889999999999999999999988877 789999998855 57888


Q ss_pred             EeCCCeEEEEeCCC
Q 042146          160 SSYDGLYRILDAST  173 (262)
Q Consensus       160 ~~~dg~i~~~d~~~  173 (262)
                      |...|.|.+||++.
T Consensus       254 Gl~nG~VlvyD~R~  267 (463)
T KOG1645|consen  254 GLQNGMVLVYDMRQ  267 (463)
T ss_pred             eccCceEEEEEccC
Confidence            88999999999987

>KOG4532 consensus WD40-like repeat containing protein [General function prediction only]

Probab=99.03  E-value=2.1e-07  Score=67.61  Aligned_cols=199  Identities=9%  Similarity=0.029  Sum_probs=118.0

Q ss_pred             CCCeEEEecCCCeEEEeecCCCCCCCC----CCC--CCCccccCC--cccc-ccceeEEEEecCCCccceecccCCcceE
Q 042146           34 DGRLLTSSSAEKTLLTYSLSSISNFDS----TPP--SPLQKFTGH--EQGI-SDLATIRLWDVPTATSLKTLIGHTNYVF  104 (262)
Q Consensus        34 ~~~~l~s~~~d~~i~iw~~~~~~~~~~----~~~--~~~~~~~~~--~~~v-~~~~~i~v~d~~~~~~~~~~~~~~~~v~  104 (262)
                      ...+||.|+..|...+|.+.+......    ...  .........  ...+ ....++++.+++.+..-....-..-.++
T Consensus        83 kc~~la~gG~~g~fd~~~~~tn~~h~~~cd~snn~v~~~~r~cd~~~~~~i~sndht~k~~~~~~~s~~~~~h~~~~~~n  162 (344)
T KOG4532|consen   83 KCVTLADGGASGQFDLFACNTNDGHLYQCDVSNNDVTLVKRYCDLKFPLNIASNDHTGKTMVVSGDSNKFAVHNQNLTQN  162 (344)
T ss_pred             cccEEEeccccceeeeecccCcccceeeecccccchhhhhhhcccccceeeccCCcceeEEEEecCcccceeecccccee
Confidence            345899999999999998764221100    000  000000000  0011 1112666776654433222211113388


Q ss_pred             EEEEeCCCCEEEeecCCCeEEEEECCCC-e-eeee-eecCCCCeeeEEEccCCCEEEEEeCCCeEEEEeCCC--------
Q 042146          105 CINFNPQSNRIVSDTFNETIRIWDIKTG-K-CLKV-LPAHSDPVTAIDFNRDGTMIVTSSYDGLYRILDAST--------  173 (262)
Q Consensus       105 ~~~~~~~~~~l~~~~~dg~i~vwd~~~~-~-~~~~-~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~d~~~--------  173 (262)
                      +++++++++++++.+....|..|.+... + .+.. ...-+..-.+..|+.....+|++..||++.+||+|.        
T Consensus       163 s~~~snd~~~~~~Vgds~~Vf~y~id~~sey~~~~~~a~t~D~gF~~S~s~~~~~FAv~~Qdg~~~I~DVR~~~tpm~~~  242 (344)
T KOG4532|consen  163 SLHYSNDPSWGSSVGDSRRVFRYAIDDESEYIENIYEAPTSDHGFYNSFSENDLQFAVVFQDGTCAIYDVRNMATPMAEI  242 (344)
T ss_pred             eeEEcCCCceEEEecCCCcceEEEeCCccceeeeeEecccCCCceeeeeccCcceEEEEecCCcEEEEEecccccchhhh
Confidence            9999999999999999999999988643 2 2221 222344557889999999999999999999999987        


Q ss_pred             ------CCc-------------cEEEEEcCCCeEEEEecCCCceeeEEeccCCceeEEEEEEecCCCeeEEccc-cceEE
Q 042146          174 ------PNG-------------KFILVGTLDNTLRLWNYSTRKILKTYSGYTNSKYCISSTFSVTNGKYIVSHR-DPVIS  233 (262)
Q Consensus       174 ------~~~-------------~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~v~~  233 (262)
                            ++|             .+|+..-.-+.+.+.|++++.-.+.+...+..               ...|. ..|..
T Consensus       243 sstrp~hnGa~R~c~Fsl~g~lDLLf~sEhfs~~hv~D~R~~~~~q~I~i~~d~---------------~~~~~tq~ifg  307 (344)
T KOG4532|consen  243 SSTRPHHNGAFRVCRFSLYGLLDLLFISEHFSRVHVVDTRNYVNHQVIVIPDDV---------------ERKHNTQHIFG  307 (344)
T ss_pred             cccCCCCCCceEEEEecCCCcceEEEEecCcceEEEEEcccCceeeEEecCccc---------------ccccccccccc
Confidence                  111             23344444466777888877655544322111               00133 33777


Q ss_pred             EEEcCCCCeEEEee
Q 042146          234 VASHPAKNIIASGA  247 (262)
Q Consensus       234 ~~~~p~~~~l~~~~  247 (262)
                      -.|+.++.-+.+.+
T Consensus       308 t~f~~~n~s~~v~~  321 (344)
T KOG4532|consen  308 TNFNNENESNDVKN  321 (344)
T ss_pred             ccccCCCccccccc
Confidence            77877776666665

>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species

Probab=99.02  E-value=3.6e-07  Score=68.70  Aligned_cols=194  Identities=17%  Similarity=0.139  Sum_probs=111.6

Q ss_pred             EEEEcc-CCCeEEEecCCCeEEEeecCCCCCCCCCCCCCCcc-cc--CCccccccceeEEEEecCCCccceecc----c-
Q 042146           28 YVKFSH-DGRLLTSSSAEKTLLTYSLSSISNFDSTPPSPLQK-FT--GHEQGISDLATIRLWDVPTATSLKTLI----G-   98 (262)
Q Consensus        28 ~~~~~~-~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~-~~--~~~~~v~~~~~i~v~d~~~~~~~~~~~----~-   98 (262)
                      +..|.+ ++.++++--..+.|..|+...........+.+... +.  ....-+.....+.++|..+++......    . 
T Consensus         4 gp~~d~~~g~l~~~D~~~~~i~~~~~~~~~~~~~~~~~~~G~~~~~~~g~l~v~~~~~~~~~d~~~g~~~~~~~~~~~~~   83 (246)
T PF08450_consen    4 GPVWDPRDGRLYWVDIPGGRIYRVDPDTGEVEVIDLPGPNGMAFDRPDGRLYVADSGGIAVVDPDTGKVTVLADLPDGGV   83 (246)
T ss_dssp             EEEEETTTTEEEEEETTTTEEEEEETTTTEEEEEESSSEEEEEEECTTSEEEEEETTCEEEEETTTTEEEEEEEEETTCS
T ss_pred             ceEEECCCCEEEEEEcCCCEEEEEECCCCeEEEEecCCCceEEEEccCCEEEEEEcCceEEEecCCCcEEEEeeccCCCc
Confidence            345665 55555555556666666655432211111111100 00  111111111245556776664332222    1 


Q ss_pred             CCcceEEEEEeCCCCEEEeecCC--------CeEEEEECCCCeeeeeeecCCCCeeeEEEccCCCEEE-EEeCCCeEEEE
Q 042146           99 HTNYVFCINFNPQSNRIVSDTFN--------ETIRIWDIKTGKCLKVLPAHSDPVTAIDFNRDGTMIV-TSSYDGLYRIL  169 (262)
Q Consensus        99 ~~~~v~~~~~~~~~~~l~~~~~d--------g~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~-~~~~dg~i~~~  169 (262)
                      .....+.+++.|+|++.++....        |.|..++.. ++...... .-...+.|+|+|+++.|+ +-+..+.|..|
T Consensus        84 ~~~~~ND~~vd~~G~ly~t~~~~~~~~~~~~g~v~~~~~~-~~~~~~~~-~~~~pNGi~~s~dg~~lyv~ds~~~~i~~~  161 (246)
T PF08450_consen   84 PFNRPNDVAVDPDGNLYVTDSGGGGASGIDPGSVYRIDPD-GKVTVVAD-GLGFPNGIAFSPDGKTLYVADSFNGRIWRF  161 (246)
T ss_dssp             CTEEEEEEEE-TTS-EEEEEECCBCTTCGGSEEEEEEETT-SEEEEEEE-EESSEEEEEEETTSSEEEEEETTTTEEEEE
T ss_pred             ccCCCceEEEcCCCCEEEEecCCCccccccccceEEECCC-CeEEEEec-CcccccceEECCcchheeecccccceeEEE
Confidence            34678899999999977765543        568888877 55433333 345568999999998765 55677888888


Q ss_pred             eCCC---------------------------CCccEEEEEcCCCeEEEEecCCCceeeEEeccCCceeEEEEEEecCCCe
Q 042146          170 DAST---------------------------PNGKFILVGTLDNTLRLWNYSTRKILKTYSGYTNSKYCISSTFSVTNGK  222 (262)
Q Consensus       170 d~~~---------------------------~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  222 (262)
                      ++..                           .++++.++.-..+.|.++|.+ |+.+..+..                  
T Consensus       162 ~~~~~~~~~~~~~~~~~~~~~~g~pDG~~vD~~G~l~va~~~~~~I~~~~p~-G~~~~~i~~------------------  222 (246)
T PF08450_consen  162 DLDADGGELSNRRVFIDFPGGPGYPDGLAVDSDGNLWVADWGGGRIVVFDPD-GKLLREIEL------------------  222 (246)
T ss_dssp             EEETTTCCEEEEEEEEE-SSSSCEEEEEEEBTTS-EEEEEETTTEEEEEETT-SCEEEEEE-------------------
T ss_pred             eccccccceeeeeeEEEcCCCCcCCCcceEcCCCCEEEEEcCCCEEEEECCC-ccEEEEEcC------------------
Confidence            8753                           456666666677888888876 887777764                  


Q ss_pred             eEEccccceEEEEE-cCCCCeEEEe
Q 042146          223 YIVSHRDPVISVAS-HPAKNIIASG  246 (262)
Q Consensus       223 ~~~~~~~~v~~~~~-~p~~~~l~~~  246 (262)
                          ....+++++| -|+.+.|+..
T Consensus       223 ----p~~~~t~~~fgg~~~~~L~vT  243 (246)
T PF08450_consen  223 ----PVPRPTNCAFGGPDGKTLYVT  243 (246)
T ss_dssp             ----SSSSEEEEEEESTTSSEEEEE
T ss_pred             ----CCCCEEEEEEECCCCCEEEEE
Confidence                3347889999 4665555443

These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....

>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=98.99  E-value=1.8e-09  Score=88.16  Aligned_cols=179  Identities=24%  Similarity=0.334  Sum_probs=120.4

Q ss_pred             cCceEEEEEccCCCeEEEecCCCeEEEeecCCCCCCCCCCCCCCccccCCccccccceeEEEEecCCCccceecccCC--
Q 042146           23 LRAVSYVKFSHDGRLLTSSSAEKTLLTYSLSSISNFDSTPPSPLQKFTGHEQGISDLATIRLWDVPTATSLKTLIGHT--  100 (262)
Q Consensus        23 ~~~v~~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~i~v~d~~~~~~~~~~~~~~--  100 (262)
                      .+++.++..+|.|+-+|.++.-|.+. -|++.                                  ...+..-+ .|.  
T Consensus        24 ~~~~~a~si~p~grdi~lAsr~gl~i-~dld~----------------------------------p~~ppr~l-~h~tp   67 (1081)
T KOG0309|consen   24 DGGFNAVSINPSGRDIVLASRQGLYI-IDLDD----------------------------------PFTPPRWL-HHITP   67 (1081)
T ss_pred             cCcccceeeccccchhhhhhhcCeEE-EeccC----------------------------------CCCCceee-eccCc
Confidence            56788999999999999998776433 23221                                  11111111 122  


Q ss_pred             cceEEEEEeCC--CCEEEeecCCCeEEEEECCC---CeeeeeeecCCCCeeeEEEcc-CCCEEEEEeCCCeEEEEeCCCC
Q 042146          101 NYVFCINFNPQ--SNRIVSDTFNETIRIWDIKT---GKCLKVLPAHSDPVTAIDFNR-DGTMIVTSSYDGLYRILDASTP  174 (262)
Q Consensus       101 ~~v~~~~~~~~--~~~l~~~~~dg~i~vwd~~~---~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~dg~i~~~d~~~~  174 (262)
                      -.|-...|+|.  ..+-++......-.+|++..   ......+.+|...|+.+-|+| ....+++++.|-.+..||+++|
T Consensus        68 w~vad~qws~h~a~~~wiVsts~qkaiiwnlA~ss~~aIef~lhghsraitd~n~~~q~pdVlatcsvdt~vh~wd~rSp  147 (1081)
T KOG0309|consen   68 WQVADVQWSPHPAKPYWIVSTSNQKAIIWNLAKSSSNAIEFVLHGHSRAITDINFNPQHPDVLATCSVDTYVHAWDMRSP  147 (1081)
T ss_pred             chhcceecccCCCCceeEEecCcchhhhhhhhcCCccceEEEEecCccceeccccCCCCCcceeeccccccceeeeccCC
Confidence            23555667663  33344444455667788752   333445678999999999999 4568999999999999999983


Q ss_pred             C---------------------ccEEEEEcCCCeEEEEecCCC-ceeeEEeccCCceeEEEEEEecCCCeeEEccccceE
Q 042146          175 N---------------------GKFILVGTLDNTLRLWNYSTR-KILKTYSGYTNSKYCISSTFSVTNGKYIVSHRDPVI  232 (262)
Q Consensus       175 ~---------------------~~~l~~~~~dg~i~i~d~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~  232 (262)
                      .                     ...+++.+....|++||++.| .++..+++                      |...|+
T Consensus       148 ~~p~ys~~~w~s~asqVkwnyk~p~vlasshg~~i~vwd~r~gs~pl~s~K~----------------------~vs~vn  205 (1081)
T KOG0309|consen  148 HRPFYSTSSWRSAASQVKWNYKDPNVLASSHGNDIFVWDLRKGSTPLCSLKG----------------------HVSSVN  205 (1081)
T ss_pred             CcceeeeecccccCceeeecccCcchhhhccCCceEEEeccCCCcceEEecc----------------------cceeee
Confidence            2                     223344455567899998875 46666666                      777788


Q ss_pred             EEEEcCC-CCeEEEeeecCCCcEEEEeecc
Q 042146          233 SVASHPA-KNIIASGALDNDRTMKIWTQEK  261 (262)
Q Consensus       233 ~~~~~p~-~~~l~~~~~d~d~~i~iw~~~~  261 (262)
                      .+.|..- ...+.+++  .||+|+.|+.++
T Consensus       206 ~~~fnr~~~s~~~s~~--~d~tvkfw~y~k  233 (1081)
T KOG0309|consen  206 SIDFNRFKYSEIMSSS--NDGTVKFWDYSK  233 (1081)
T ss_pred             hHHHhhhhhhhhcccC--CCCceeeecccc
Confidence            8888764 34566777  799999999864

>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]

Probab=98.98  E-value=3.1e-07  Score=69.32  Aligned_cols=144  Identities=12%  Similarity=0.200  Sum_probs=103.9

Q ss_pred             cCCcceEEEEEeCCCCEEEeecCC---CeEEEEECCC--Cee--eeeeecCCCCeeeEEEccCCCEEEEEe-CCCeEEEE
Q 042146           98 GHTNYVFCINFNPQSNRIVSDTFN---ETIRIWDIKT--GKC--LKVLPAHSDPVTAIDFNRDGTMIVTSS-YDGLYRIL  169 (262)
Q Consensus        98 ~~~~~v~~~~~~~~~~~l~~~~~d---g~i~vwd~~~--~~~--~~~~~~~~~~v~~~~~~~~~~~l~~~~-~dg~i~~~  169 (262)
                      ...+..+-|+++|+++.|+++-.+   |.|.-|.+..  |+.  +........+-+-+++++++++++++. ..|.|.++
T Consensus        37 ~~~~nptyl~~~~~~~~LY~v~~~~~~ggvaay~iD~~~G~Lt~ln~~~~~g~~p~yvsvd~~g~~vf~AnY~~g~v~v~  116 (346)
T COG2706          37 AELGNPTYLAVNPDQRHLYVVNEPGEEGGVAAYRIDPDDGRLTFLNRQTLPGSPPCYVSVDEDGRFVFVANYHSGSVSVY  116 (346)
T ss_pred             cccCCCceEEECCCCCEEEEEEecCCcCcEEEEEEcCCCCeEEEeeccccCCCCCeEEEECCCCCEEEEEEccCceEEEE
Confidence            456678899999999999887654   6677766653  543  222222233448899999999888886 56789888


Q ss_pred             eCCC---------------------------------CCccEEEEEc-CCCeEEEEecCCCceeeEEeccCCceeEEEEE
Q 042146          170 DAST---------------------------------PNGKFILVGT-LDNTLRLWNYSTRKILKTYSGYTNSKYCISST  215 (262)
Q Consensus       170 d~~~---------------------------------~~~~~l~~~~-~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~  215 (262)
                      -++.                                 |++++|++.+ .-..|.+|++..|++...-+..-         
T Consensus       117 p~~~dG~l~~~v~~~~h~g~~p~~rQ~~~h~H~a~~tP~~~~l~v~DLG~Dri~~y~~~dg~L~~~~~~~v---------  187 (346)
T COG2706         117 PLQADGSLQPVVQVVKHTGSGPHERQESPHVHSANFTPDGRYLVVPDLGTDRIFLYDLDDGKLTPADPAEV---------  187 (346)
T ss_pred             EcccCCccccceeeeecCCCCCCccccCCccceeeeCCCCCEEEEeecCCceEEEEEcccCcccccccccc---------
Confidence            8754                                 7888888876 33478999998776654333211         


Q ss_pred             EecCCCeeEEccccceEEEEEcCCCCeEEEeeecCCCcEEEEeecc
Q 042146          216 FSVTNGKYIVSHRDPVISVASHPAKNIIASGALDNDRTMKIWTQEK  261 (262)
Q Consensus       216 ~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~d~d~~i~iw~~~~  261 (262)
                                ......+.|.|+|++++....+. -+++|.+|++++
T Consensus       188 ----------~~G~GPRHi~FHpn~k~aY~v~E-L~stV~v~~y~~  222 (346)
T COG2706         188 ----------KPGAGPRHIVFHPNGKYAYLVNE-LNSTVDVLEYNP  222 (346)
T ss_pred             ----------CCCCCcceEEEcCCCcEEEEEec-cCCEEEEEEEcC
Confidence                      14556789999999999888873 589999999875

>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL

Probab=98.94  E-value=6.9e-07  Score=71.61  Aligned_cols=167  Identities=14%  Similarity=0.120  Sum_probs=102.3

Q ss_pred             CCCeEEEecCCCeEEEeecCCCCCC-CCCCCCCCcccc-CCcccc---ccceeEEEEecCCCccceecccCCcceE----
Q 042146           34 DGRLLTSSSAEKTLLTYSLSSISNF-DSTPPSPLQKFT-GHEQGI---SDLATIRLWDVPTATSLKTLIGHTNYVF----  104 (262)
Q Consensus        34 ~~~~l~s~~~d~~i~iw~~~~~~~~-~~~~~~~~~~~~-~~~~~v---~~~~~i~v~d~~~~~~~~~~~~~~~~v~----  104 (262)
                      ++..++.++.++.+..+|.++.+.. ...........+ .....+   ...+.+..+|.++++.+.+.........    
T Consensus       104 ~~~~v~v~~~~g~l~ald~~tG~~~W~~~~~~~~~~~p~v~~~~v~v~~~~g~l~a~d~~tG~~~W~~~~~~~~~~~~~~  183 (377)
T TIGR03300       104 DGGLVFVGTEKGEVIALDAEDGKELWRAKLSSEVLSPPLVANGLVVVRTNDGRLTALDAATGERLWTYSRVTPALTLRGS  183 (377)
T ss_pred             cCCEEEEEcCCCEEEEEECCCCcEeeeeccCceeecCCEEECCEEEEECCCCeEEEEEcCCCceeeEEccCCCceeecCC
Confidence            4667888888999999998654321 111111100000 001111   1223789999999888776654322111    


Q ss_pred             -EEEEeCCCCEEEeecCCCeEEEEECCCCeeeeeeecCCC----C---eeeEEEcc--CCCEEEEEeCCCeEEEEeCCC-
Q 042146          105 -CINFNPQSNRIVSDTFNETIRIWDIKTGKCLKVLPAHSD----P---VTAIDFNR--DGTMIVTSSYDGLYRILDAST-  173 (262)
Q Consensus       105 -~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~----~---v~~~~~~~--~~~~l~~~~~dg~i~~~d~~~-  173 (262)
                       +...  .+..++.+..+|.+..+|+++++.+........    .   +..+.-+|  .+..+++++.+|.+..+|..+ 
T Consensus       184 ~sp~~--~~~~v~~~~~~g~v~ald~~tG~~~W~~~~~~~~g~~~~~~~~~~~~~p~~~~~~vy~~~~~g~l~a~d~~tG  261 (377)
T TIGR03300       184 ASPVI--ADGGVLVGFAGGKLVALDLQTGQPLWEQRVALPKGRTELERLVDVDGDPVVDGGQVYAVSYQGRVAALDLRSG  261 (377)
T ss_pred             CCCEE--ECCEEEEECCCCEEEEEEccCCCEeeeeccccCCCCCchhhhhccCCccEEECCEEEEEEcCCEEEEEECCCC
Confidence             1112  234678888899999999999987765432110    0   01111112  355788888899999999865 


Q ss_pred             ---------------CCccEEEEEcCCCeEEEEecCCCceeeEE
Q 042146          174 ---------------PNGKFILVGTLDNTLRLWNYSTRKILKTY  202 (262)
Q Consensus       174 ---------------~~~~~l~~~~~dg~i~i~d~~~~~~~~~~  202 (262)
                                     ..+..+++++.+|.++.+|..+|+.+...
T Consensus       262 ~~~W~~~~~~~~~p~~~~~~vyv~~~~G~l~~~d~~tG~~~W~~  305 (377)
T TIGR03300       262 RVLWKRDASSYQGPAVDDNRLYVTDADGVVVALDRRSGSELWKN  305 (377)
T ss_pred             cEEEeeccCCccCceEeCCEEEEECCCCeEEEEECCCCcEEEcc
Confidence                           24667888889999999999999877655

Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.

>KOG2695 consensus WD40 repeat protein [General function prediction only]

Probab=98.93  E-value=6.1e-09  Score=77.84  Aligned_cols=122  Identities=15%  Similarity=0.310  Sum_probs=96.6

Q ss_pred             EeecCCCeEEEEECCCCeeeeeeecCCCCeeeEEEccCCCEEEEEeCCCeEEEEeCCC----------------------
Q 042146          116 VSDTFNETIRIWDIKTGKCLKVLPAHSDPVTAIDFNRDGTMIVTSSYDGLYRILDAST----------------------  173 (262)
Q Consensus       116 ~~~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~d~~~----------------------  173 (262)
                      ++.+.+..|-+-|++++.. ..+. .++.|.++.|...+++++.|+.+|.|..+|+|.                      
T Consensus       228 fs~G~sqqv~L~nvetg~~-qsf~-sksDVfAlQf~~s~nLv~~GcRngeI~~iDLR~rnqG~~~~a~rlyh~Ssvtslq  305 (425)
T KOG2695|consen  228 FSVGLSQQVLLTNVETGHQ-QSFQ-SKSDVFALQFAGSDNLVFNGCRNGEIFVIDLRCRNQGNGWCAQRLYHDSSVTSLQ  305 (425)
T ss_pred             ecccccceeEEEEeecccc-cccc-cchhHHHHHhcccCCeeEecccCCcEEEEEeeecccCCCcceEEEEcCcchhhhh
Confidence            4455577888889888753 3343 577899999999899999999999999999987                      


Q ss_pred             ---CCccEEEEEcCCCeEEEEecCCCce---eeEEeccCCceeEEEEEEecCCCeeEEccccceEEEEEcCCCCeEEEee
Q 042146          174 ---PNGKFILVGTLDNTLRLWNYSTRKI---LKTYSGYTNSKYCISSTFSVTNGKYIVSHRDPVISVASHPAKNIIASGA  247 (262)
Q Consensus       174 ---~~~~~l~~~~~dg~i~i~d~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~  247 (262)
                         .++++|++.+.+|.|++||++.-++   +.++.+|.+.-                    .-.-+..+|....++++|
T Consensus       306 ~Lq~s~q~LmaS~M~gkikLyD~R~~K~~~~V~qYeGHvN~~--------------------a~l~~~v~~eeg~I~s~G  365 (425)
T KOG2695|consen  306 ILQFSQQKLMASDMTGKIKLYDLRATKCKKSVMQYEGHVNLS--------------------AYLPAHVKEEEGSIFSVG  365 (425)
T ss_pred             hhccccceEeeccCcCceeEeeehhhhcccceeeeecccccc--------------------cccccccccccceEEEcc
Confidence               4788999999999999999998777   88888865431                    112234567777888888


Q ss_pred             ecCCCcEEEEeecc
Q 042146          248 LDNDRTMKIWTQEK  261 (262)
Q Consensus       248 ~d~d~~i~iw~~~~  261 (262)
                        +|...|||.++.
T Consensus       366 --dDcytRiWsl~~  377 (425)
T KOG2695|consen  366 --DDCYTRIWSLDS  377 (425)
T ss_pred             --CeeEEEEEeccc
Confidence              899999999863

>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL

Probab=98.92  E-value=6.7e-07  Score=71.68  Aligned_cols=166  Identities=14%  Similarity=0.223  Sum_probs=102.0

Q ss_pred             CCeEEEecCCCeEEEeecCCCCCC-CCCCCCCCccccC------Ccccc---ccceeEEEEecCCCccceecccCC----
Q 042146           35 GRLLTSSSAEKTLLTYSLSSISNF-DSTPPSPLQKFTG------HEQGI---SDLATIRLWDVPTATSLKTLIGHT----  100 (262)
Q Consensus        35 ~~~l~s~~~d~~i~iw~~~~~~~~-~~~~~~~~~~~~~------~~~~v---~~~~~i~v~d~~~~~~~~~~~~~~----  100 (262)
                      +..++.++.++.|..||.++.+.. .............      ....+   ...+.+..+|.++++.+.+.....    
T Consensus       145 ~~~v~v~~~~g~l~a~d~~tG~~~W~~~~~~~~~~~~~~~sp~~~~~~v~~~~~~g~v~ald~~tG~~~W~~~~~~~~g~  224 (377)
T TIGR03300       145 NGLVVVRTNDGRLTALDAATGERLWTYSRVTPALTLRGSASPVIADGGVLVGFAGGKLVALDLQTGQPLWEQRVALPKGR  224 (377)
T ss_pred             CCEEEEECCCCeEEEEEcCCCceeeEEccCCCceeecCCCCCEEECCEEEEECCCCEEEEEEccCCCEeeeeccccCCCC
Confidence            456777788999999998764331 1110000000000      00111   112367888888887665432110    


Q ss_pred             c---ceEEEEEeC--CCCEEEeecCCCeEEEEECCCCeeeeeeecCCCCeeeEEEccCCCEEEEEeCCCeEEEEeCCC--
Q 042146          101 N---YVFCINFNP--QSNRIVSDTFNETIRIWDIKTGKCLKVLPAHSDPVTAIDFNRDGTMIVTSSYDGLYRILDAST--  173 (262)
Q Consensus       101 ~---~v~~~~~~~--~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~d~~~--  173 (262)
                      .   ....+.-.|  .+..+++++.+|.+..+|.++++.+..... .. .....  ..+..++.++.+|.+..+|..+  
T Consensus       225 ~~~~~~~~~~~~p~~~~~~vy~~~~~g~l~a~d~~tG~~~W~~~~-~~-~~~p~--~~~~~vyv~~~~G~l~~~d~~tG~  300 (377)
T TIGR03300       225 TELERLVDVDGDPVVDGGQVYAVSYQGRVAALDLRSGRVLWKRDA-SS-YQGPA--VDDNRLYVTDADGVVVALDRRSGS  300 (377)
T ss_pred             CchhhhhccCCccEEECCEEEEEEcCCEEEEEECCCCcEEEeecc-CC-ccCce--EeCCEEEEECCCCeEEEEECCCCc
Confidence            0   000111111  356788888899999999999988776642 11 12222  2466788888899998888754  


Q ss_pred             -----------------CCccEEEEEcCCCeEEEEecCCCceeeEEec
Q 042146          174 -----------------PNGKFILVGTLDNTLRLWNYSTRKILKTYSG  204 (262)
Q Consensus       174 -----------------~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~  204 (262)
                                       ..+..+++++.+|.|+++|..+|+.+..++.
T Consensus       301 ~~W~~~~~~~~~~ssp~i~g~~l~~~~~~G~l~~~d~~tG~~~~~~~~  348 (377)
T TIGR03300       301 ELWKNDELKYRQLTAPAVVGGYLVVGDFEGYLHWLSREDGSFVARLKT  348 (377)
T ss_pred             EEEccccccCCccccCEEECCEEEEEeCCCEEEEEECCCCCEEEEEEc
Confidence                             2356788999999999999999999988875

Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.

>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis]

Probab=98.91  E-value=5.4e-07  Score=71.68  Aligned_cols=175  Identities=17%  Similarity=0.361  Sum_probs=115.6

Q ss_pred             cCcCceEEEEEccCCC--eEEE-----ecCCCeEEEeecCCCCCCCCCCC------CCCc-cccCCcccc----------
Q 042146           21 GHLRAVSYVKFSHDGR--LLTS-----SSAEKTLLTYSLSSISNFDSTPP------SPLQ-KFTGHEQGI----------   76 (262)
Q Consensus        21 ~h~~~v~~~~~~~~~~--~l~s-----~~~d~~i~iw~~~~~~~~~~~~~------~~~~-~~~~~~~~v----------   76 (262)
                      -|...|+.+.+||-+.  .+|+     .|.-+.|+||.+...........      ..+. .+.....++          
T Consensus       163 l~~~~i~~f~lSpgp~~~~vAvyvPe~kGaPa~vri~~~~~~~~~~~~a~ksFFkadkvqm~WN~~gt~LLvLastdVDk  242 (566)
T KOG2315|consen  163 LSVSGITMLSLSPGPEPPFVAVYVPEKKGAPASVRIYKYPEEGQHQPVANKSFFKADKVQMKWNKLGTALLVLASTDVDK  242 (566)
T ss_pred             eeccceeeEEecCCCCCceEEEEccCCCCCCcEEEEeccccccccchhhhccccccceeEEEeccCCceEEEEEEEeecC
Confidence            3678899999999632  3443     46667899998763211111000      0000 011111111          


Q ss_pred             -----ccceeEEEEecCCCccceecccCCcceEEEEEeCCCCEEEe--ecCCCeEEEEECCCCeeeeeeecCCCCeeeEE
Q 042146           77 -----SDLATIRLWDVPTATSLKTLIGHTNYVFCINFNPQSNRIVS--DTFNETIRIWDIKTGKCLKVLPAHSDPVTAID  149 (262)
Q Consensus        77 -----~~~~~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~--~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~  149 (262)
                           +.-..+++.+++.......+. ..++|.++.|+|+++.+++  |..--++.|+|++ +.++..+  ..++=+++-
T Consensus       243 tn~SYYGEq~Lyll~t~g~s~~V~L~-k~GPVhdv~W~~s~~EF~VvyGfMPAkvtifnlr-~~~v~df--~egpRN~~~  318 (566)
T KOG2315|consen  243 TNASYYGEQTLYLLATQGESVSVPLL-KEGPVHDVTWSPSGREFAVVYGFMPAKVTIFNLR-GKPVFDF--PEGPRNTAF  318 (566)
T ss_pred             CCccccccceEEEEEecCceEEEecC-CCCCceEEEECCCCCEEEEEEecccceEEEEcCC-CCEeEeC--CCCCccceE
Confidence                 111177777776333333333 4689999999999988765  4445689999986 6666665  466778999


Q ss_pred             EccCCCEEEEEeC---CCeEEEEeCCC------------------CCccEEEEEcC------CCeEEEEecCCCceee
Q 042146          150 FNRDGTMIVTSSY---DGLYRILDAST------------------PNGKFILVGTL------DNTLRLWNYSTRKILK  200 (262)
Q Consensus       150 ~~~~~~~l~~~~~---dg~i~~~d~~~------------------~~~~~l~~~~~------dg~i~i~d~~~~~~~~  200 (262)
                      |+|.|++++.++-   -|.+-+||+.+                  |+|+++++++.      |..++||+.. |..+.
T Consensus       319 fnp~g~ii~lAGFGNL~G~mEvwDv~n~K~i~~~~a~~tt~~eW~PdGe~flTATTaPRlrvdNg~Kiwhyt-G~~l~  395 (566)
T KOG2315|consen  319 FNPHGNIILLAGFGNLPGDMEVWDVPNRKLIAKFKAANTTVFEWSPDGEYFLTATTAPRLRVDNGIKIWHYT-GSLLH  395 (566)
T ss_pred             ECCCCCEEEEeecCCCCCceEEEeccchhhccccccCCceEEEEcCCCcEEEEEeccccEEecCCeEEEEec-Cceee
Confidence            9999999988875   47899999876                  99999999974      4678899975 55443

>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation []

Probab=98.89  E-value=8.5e-07  Score=77.99  Aligned_cols=184  Identities=13%  Similarity=0.188  Sum_probs=119.2

Q ss_pred             cCceEEEEEccCCCeEEEecCCCeEEEeecCCCCCCCCCCCCCCccccCCccccccceeEEEEecCCCccceecccCCcc
Q 042146           23 LRAVSYVKFSHDGRLLTSSSAEKTLLTYSLSSISNFDSTPPSPLQKFTGHEQGISDLATIRLWDVPTATSLKTLIGHTNY  102 (262)
Q Consensus        23 ~~~v~~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~i~v~d~~~~~~~~~~~~~~~~  102 (262)
                      ...|.++.|-++...++.+..+|.|.+...+.                               +... ..+.....-...
T Consensus        75 ~~~ivs~~yl~d~~~l~~~~~~Gdi~~~~~~~-------------------------------~~~~-~~~E~VG~vd~G  122 (928)
T PF04762_consen   75 NDKIVSFQYLADSESLCIALASGDIILVREDP-------------------------------DPDE-DEIEIVGSVDSG  122 (928)
T ss_pred             CCcEEEEEeccCCCcEEEEECCceEEEEEccC-------------------------------CCCC-ceeEEEEEEcCc
Confidence            46799999999988888888889888773321                               0001 111112223467


Q ss_pred             eEEEEEeCCCCEEEeecCCCeEEEEECCCCee------------------------eeeeec------------------
Q 042146          103 VFCINFNPQSNRIVSDTFNETIRIWDIKTGKC------------------------LKVLPA------------------  140 (262)
Q Consensus       103 v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~------------------------~~~~~~------------------  140 (262)
                      |.+++|+||+.+|+..+.++++.+.+- +..+                        ...|.+                  
T Consensus       123 I~a~~WSPD~Ella~vT~~~~l~~mt~-~fd~i~E~~l~~~~~~~~~~VsVGWGkKeTQF~Gs~gK~aa~~~~~p~~~~~  201 (928)
T PF04762_consen  123 ILAASWSPDEELLALVTGEGNLLLMTR-DFDPISEVPLDSDDFGESKHVSVGWGKKETQFHGSAGKAAARQLRDPTVPKV  201 (928)
T ss_pred             EEEEEECCCcCEEEEEeCCCEEEEEec-cceEEEEeecCccccCCCceeeeccCcccCccCcchhhhhhhhccCCCCCcc
Confidence            999999999999999998998888642 1111                        111111                  


Q ss_pred             ------CCCCeeeEEEccCCCEEEEEeC---C---CeEEEEeCCC-------------------CCccEEEEEcC---CC
Q 042146          141 ------HSDPVTAIDFNRDGTMIVTSSY---D---GLYRILDAST-------------------PNGKFILVGTL---DN  186 (262)
Q Consensus       141 ------~~~~v~~~~~~~~~~~l~~~~~---d---g~i~~~d~~~-------------------~~~~~l~~~~~---dg  186 (262)
                            ....-..++|-.||.+|++.+.   .   +.+++|+-..                   |.|+++++...   ..
T Consensus       202 d~~~~s~dd~~~~ISWRGDG~yFAVss~~~~~~~~R~iRVy~ReG~L~stSE~v~gLe~~l~WrPsG~lIA~~q~~~~~~  281 (928)
T PF04762_consen  202 DEGKLSWDDGRVRISWRGDGEYFAVSSVEPETGSRRVIRVYSREGELQSTSEPVDGLEGALSWRPSGNLIASSQRLPDRH  281 (928)
T ss_pred             ccCccccCCCceEEEECCCCcEEEEEEEEcCCCceeEEEEECCCceEEeccccCCCccCCccCCCCCCEEEEEEEcCCCc
Confidence                  1223456888889999988874   2   5788888654                   77877777653   23


Q ss_pred             eEEEEecCCCceeeEEeccCCceeEEEEEEecCCCeeEEccccceEEEEEcCCCCeEEEeeecCCCcEEEEeecc
Q 042146          187 TLRLWNYSTRKILKTYSGYTNSKYCISSTFSVTNGKYIVSHRDPVISVASHPAKNIIASGALDNDRTMKIWTQEK  261 (262)
Q Consensus       187 ~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~d~d~~i~iw~~~~  261 (262)
                      .|.+|. ++|-.-..|.-...                  .....|..+.|++++..||..-  .| .|.+|-..+
T Consensus       282 ~VvFfE-rNGLrhgeF~l~~~------------------~~~~~v~~l~Wn~ds~iLAv~~--~~-~vqLWt~~N  334 (928)
T PF04762_consen  282 DVVFFE-RNGLRHGEFTLRFD------------------PEEEKVIELAWNSDSEILAVWL--ED-RVQLWTRSN  334 (928)
T ss_pred             EEEEEe-cCCcEeeeEecCCC------------------CCCceeeEEEECCCCCEEEEEe--cC-CceEEEeeC
Confidence            455554 23333333322110                  0456789999999999999987  44 499998754

>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]

Probab=98.88  E-value=7.3e-07  Score=71.07  Aligned_cols=130  Identities=11%  Similarity=0.163  Sum_probs=73.6

Q ss_pred             EEEEEccCCCeEEEecCCCeEEEeecCCCCCCCCCCC------------CCCccccCCccccc----cceeEEEEecCCC
Q 042146           27 SYVKFSHDGRLLTSSSAEKTLLTYSLSSISNFDSTPP------------SPLQKFTGHEQGIS----DLATIRLWDVPTA   90 (262)
Q Consensus        27 ~~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~------------~~~~~~~~~~~~v~----~~~~i~v~d~~~~   90 (262)
                      +-+.|||.|.||+|--.. -|.+|--++.........            ..+..+......+.    .-..+.|||+.+|
T Consensus       214 tyv~wSP~GTYL~t~Hk~-GI~lWGG~~f~r~~RF~Hp~Vq~idfSP~EkYLVT~s~~p~~~~~~d~e~~~l~IWDI~tG  292 (698)
T KOG2314|consen  214 TYVRWSPKGTYLVTFHKQ-GIALWGGESFDRIQRFYHPGVQFIDFSPNEKYLVTYSPEPIIVEEDDNEGQQLIIWDIATG  292 (698)
T ss_pred             eeEEecCCceEEEEEecc-ceeeecCccHHHHHhccCCCceeeecCCccceEEEecCCccccCcccCCCceEEEEEcccc
Confidence            568899999999997654 477885433211111000            11111111111111    1128999999999


Q ss_pred             ccceecccCC--cc-eEEEEEeCCCCEEEeecCCCeEEEEECCCCeeeeeeecCCCCeeeEEEccCCCEEE
Q 042146           91 TSLKTLIGHT--NY-VFCINFNPQSNRIVSDTFNETIRIWDIKTGKCLKVLPAHSDPVTAIDFNRDGTMIV  158 (262)
Q Consensus        91 ~~~~~~~~~~--~~-v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~  158 (262)
                      ...+.+....  .. -.-..|+.|++++|.-.. ..|.||+..+..++..-.-.-..|....|+|.+++||
T Consensus       293 ~lkrsF~~~~~~~~~WP~frWS~DdKy~Arm~~-~sisIyEtpsf~lld~Kslki~gIr~FswsP~~~llA  362 (698)
T KOG2314|consen  293 LLKRSFPVIKSPYLKWPIFRWSHDDKYFARMTG-NSISIYETPSFMLLDKKSLKISGIRDFSWSPTSNLLA  362 (698)
T ss_pred             chhcceeccCCCccccceEEeccCCceeEEecc-ceEEEEecCceeeecccccCCccccCcccCCCcceEE
Confidence            9888776522  22 234689999999987665 5788898765433222212234455556666555444

>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]

Probab=98.87  E-value=3.2e-09  Score=88.56  Aligned_cols=126  Identities=11%  Similarity=0.162  Sum_probs=95.2

Q ss_pred             eecccccceecccCcCceEEEEEccCCCeEEEecCCCeEEEeecCCCCCCCCCCCCCCccccCCccccccceeEEEEecC
Q 042146            9 SFRPYTLTQTLNGHLRAVSYVKFSHDGRLLTSSSAEKTLLTYSLSSISNFDSTPPSPLQKFTGHEQGISDLATIRLWDVP   88 (262)
Q Consensus         9 ~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~i~v~d~~   88 (262)
                      +|..++..++++.|...-+|++|+-..+.|+.|+..|.|+++++                                   .
T Consensus      1087 IFSRFr~w~~frd~~~~fTc~afs~~~~hL~vG~~~Geik~~nv-----------------------------------~ 1131 (1516)
T KOG1832|consen 1087 IFSRFRSWRSFRDETALFTCIAFSGGTNHLAVGSHAGEIKIFNV-----------------------------------S 1131 (1516)
T ss_pred             hHhhcccchhhhccccceeeEEeecCCceEEeeeccceEEEEEc-----------------------------------c
Confidence            35567788899999999999999999999999999998887754                                   5


Q ss_pred             CCccceecccCCcceEEEEEeCCCCEEEeecCCC--eEEEEECCC-CeeeeeeecCCCCeeeEEEccCCCEEEEEeCCCe
Q 042146           89 TATSLKTLIGHTNYVFCINFNPQSNRIVSDTFNE--TIRIWDIKT-GKCLKVLPAHSDPVTAIDFNRDGTMIVTSSYDGL  165 (262)
Q Consensus        89 ~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg--~i~vwd~~~-~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~  165 (262)
                      +|.......+|..+|+-+.-+.+|..+++.+.-.  ...+|++.+ +.+.+.+..    -.++.|+.....-+.|.....
T Consensus      1132 sG~~e~s~ncH~SavT~vePs~dgs~~Ltsss~S~PlsaLW~~~s~~~~~Hsf~e----d~~vkFsn~~q~r~~gt~~d~ 1207 (1516)
T KOG1832|consen 1132 SGSMEESVNCHQSAVTLVEPSVDGSTQLTSSSSSSPLSALWDASSTGGPRHSFDE----DKAVKFSNSLQFRALGTEADD 1207 (1516)
T ss_pred             CccccccccccccccccccccCCcceeeeeccccCchHHHhccccccCccccccc----cceeehhhhHHHHHhcccccc
Confidence            6777778889999999998888888776554332  467898753 445555543    357788876555555555567


Q ss_pred             EEEEeCCC
Q 042146          166 YRILDAST  173 (262)
Q Consensus       166 i~~~d~~~  173 (262)
                      ..+||+.+
T Consensus      1208 a~~YDvqT 1215 (1516)
T KOG1832|consen 1208 ALLYDVQT 1215 (1516)
T ss_pred             eEEEeccc
Confidence            78888776

>KOG3914 consensus WD repeat protein WDR4 [Function unknown]

Probab=98.87  E-value=1.9e-08  Score=76.52  Aligned_cols=99  Identities=22%  Similarity=0.400  Sum_probs=74.8

Q ss_pred             EEEEEeCCCCEEEe---ecCCCeEEEEECCCCeeeeeeecCCCCeeeEEEccCCCEEEEEeCCCeEEEEeCCC-------
Q 042146          104 FCINFNPQSNRIVS---DTFNETIRIWDIKTGKCLKVLPAHSDPVTAIDFNRDGTMIVTSSYDGLYRILDAST-------  173 (262)
Q Consensus       104 ~~~~~~~~~~~l~~---~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~d~~~-------  173 (262)
                      +++.+..+......   ++....+.+|....+.+.. +-+|-+.+++++++||+++++++..|..|++-....       
T Consensus       111 ~ai~~~~~~~sv~v~dkagD~~~~di~s~~~~~~~~-~lGhvSml~dVavS~D~~~IitaDRDEkIRvs~ypa~f~Iesf  189 (390)
T KOG3914|consen  111 TAISFIREDTSVLVADKAGDVYSFDILSADSGRCEP-ILGHVSMLLDVAVSPDDQFIITADRDEKIRVSRYPATFVIESF  189 (390)
T ss_pred             ceeeeeeccceEEEEeecCCceeeeeecccccCcch-hhhhhhhhheeeecCCCCEEEEecCCceEEEEecCcccchhhh
Confidence            34444444444333   3444556666665555444 448999999999999999999999999999877654       


Q ss_pred             -------------CCccEEEEEcCCCeEEEEecCCCceeeEEe
Q 042146          174 -------------PNGKFILVGTLDNTLRLWNYSTRKILKTYS  203 (262)
Q Consensus       174 -------------~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~  203 (262)
                                   .++..|++|+.|++|++||+++|+++.++.
T Consensus       190 clGH~eFVS~isl~~~~~LlS~sGD~tlr~Wd~~sgk~L~t~d  232 (390)
T KOG3914|consen  190 CLGHKEFVSTISLTDNYLLLSGSGDKTLRLWDITSGKLLDTCD  232 (390)
T ss_pred             ccccHhheeeeeeccCceeeecCCCCcEEEEecccCCcccccc
Confidence                         466779999999999999999999887665

>KOG4532 consensus WD40-like repeat containing protein [General function prediction only]

Probab=98.85  E-value=4.4e-07  Score=65.96  Aligned_cols=118  Identities=14%  Similarity=0.155  Sum_probs=88.4

Q ss_pred             eEEEEEccCCCeEEEecCCCeEEEeecCCCCCCCCCCCCCCccccCCccccccceeEEEEecCCCccce-ecccCCcceE
Q 042146           26 VSYVKFSHDGRLLTSSSAEKTLLTYSLSSISNFDSTPPSPLQKFTGHEQGISDLATIRLWDVPTATSLK-TLIGHTNYVF  104 (262)
Q Consensus        26 v~~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~i~v~d~~~~~~~~-~~~~~~~~v~  104 (262)
                      +.+++++++++++++.+....|..|.++...                                 ...+. ......+.-.
T Consensus       161 ~ns~~~snd~~~~~~Vgds~~Vf~y~id~~s---------------------------------ey~~~~~~a~t~D~gF  207 (344)
T KOG4532|consen  161 QNSLHYSNDPSWGSSVGDSRRVFRYAIDDES---------------------------------EYIENIYEAPTSDHGF  207 (344)
T ss_pred             eeeeEEcCCCceEEEecCCCcceEEEeCCcc---------------------------------ceeeeeEecccCCCce
Confidence            8899999999999999999999988765411                                 11111 2222334456


Q ss_pred             EEEEeCCCCEEEeecCCCeEEEEECCCCeee-----eeeecCCCCeeeEEEccCCC--EEEEEeCCCeEEEEeCCCCCc
Q 042146          105 CINFNPQSNRIVSDTFNETIRIWDIKTGKCL-----KVLPAHSDPVTAIDFNRDGT--MIVTSSYDGLYRILDASTPNG  176 (262)
Q Consensus       105 ~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~-----~~~~~~~~~v~~~~~~~~~~--~l~~~~~dg~i~~~d~~~~~~  176 (262)
                      +..|+.....+|++..||++.|||++.....     .+-..|++.+..+.|++.|.  +|+..-.-+.+.+.|+|.-..
T Consensus       208 ~~S~s~~~~~FAv~~Qdg~~~I~DVR~~~tpm~~~sstrp~hnGa~R~c~Fsl~g~lDLLf~sEhfs~~hv~D~R~~~~  286 (344)
T KOG4532|consen  208 YNSFSENDLQFAVVFQDGTCAIYDVRNMATPMAEISSTRPHHNGAFRVCRFSLYGLLDLLFISEHFSRVHVVDTRNYVN  286 (344)
T ss_pred             eeeeccCcceEEEEecCCcEEEEEecccccchhhhcccCCCCCCceEEEEecCCCcceEEEEecCcceEEEEEcccCce
Confidence            7889998999999999999999999865322     22245889999999998653  677777788999999998333

>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3

Probab=98.83  E-value=2.9e-06  Score=67.09  Aligned_cols=138  Identities=12%  Similarity=0.201  Sum_probs=95.5

Q ss_pred             cceEEEEEeCCCCEEEeecC----CCeEEEEECCCC--e--eeeeeecCCCCeeeEEEccCCCEEEEEe-CCCeEEEEeC
Q 042146          101 NYVFCINFNPQSNRIVSDTF----NETIRIWDIKTG--K--CLKVLPAHSDPVTAIDFNRDGTMIVTSS-YDGLYRILDA  171 (262)
Q Consensus       101 ~~v~~~~~~~~~~~l~~~~~----dg~i~vwd~~~~--~--~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~dg~i~~~d~  171 (262)
                      .....++++|++++|++...    +|.|..|.+...  +  .+............++++|++++|+++. .+|.+.++++
T Consensus        37 ~~Ps~l~~~~~~~~LY~~~e~~~~~g~v~~~~i~~~~g~L~~~~~~~~~g~~p~~i~~~~~g~~l~vany~~g~v~v~~l  116 (345)
T PF10282_consen   37 ENPSWLAVSPDGRRLYVVNEGSGDSGGVSSYRIDPDTGTLTLLNSVPSGGSSPCHIAVDPDGRFLYVANYGGGSVSVFPL  116 (345)
T ss_dssp             SSECCEEE-TTSSEEEEEETTSSTTTEEEEEEEETTTTEEEEEEEEEESSSCEEEEEECTTSSEEEEEETTTTEEEEEEE
T ss_pred             CCCceEEEEeCCCEEEEEEccccCCCCEEEEEECCCcceeEEeeeeccCCCCcEEEEEecCCCEEEEEEccCCeEEEEEc
Confidence            44567889999999988766    578999988753  3  3333332344567899999999988887 5889999987


Q ss_pred             CC----------------------------------CCccEEEEEc-CCCeEEEEecCCCc--eee--EEeccCCceeEE
Q 042146          172 ST----------------------------------PNGKFILVGT-LDNTLRLWNYSTRK--ILK--TYSGYTNSKYCI  212 (262)
Q Consensus       172 ~~----------------------------------~~~~~l~~~~-~dg~i~i~d~~~~~--~~~--~~~~~~~~~~~~  212 (262)
                      ..                                  |+++++++.. ....|.+|++....  +..  .+..        
T Consensus       117 ~~~g~l~~~~~~~~~~g~g~~~~rq~~~h~H~v~~~pdg~~v~v~dlG~D~v~~~~~~~~~~~l~~~~~~~~--------  188 (345)
T PF10282_consen  117 DDDGSLGEVVQTVRHEGSGPNPDRQEGPHPHQVVFSPDGRFVYVPDLGADRVYVYDIDDDTGKLTPVDSIKV--------  188 (345)
T ss_dssp             CTTSEEEEEEEEEESEEEESSTTTTSSTCEEEEEE-TTSSEEEEEETTTTEEEEEEE-TTS-TEEEEEEEEC--------
T ss_pred             cCCcccceeeeecccCCCCCcccccccccceeEEECCCCCEEEEEecCCCEEEEEEEeCCCceEEEeecccc--------
Confidence            65                                  6777666654 33478888776544  221  1111        


Q ss_pred             EEEEecCCCeeEEccccceEEEEEcCCCCeEEEeeecCCCcEEEEeec
Q 042146          213 SSTFSVTNGKYIVSHRDPVISVASHPAKNIIASGALDNDRTMKIWTQE  260 (262)
Q Consensus       213 ~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~d~d~~i~iw~~~  260 (262)
                                   ......+.++|+|++++++.... .++.|.+++++
T Consensus       189 -------------~~G~GPRh~~f~pdg~~~Yv~~e-~s~~v~v~~~~  222 (345)
T PF10282_consen  189 -------------PPGSGPRHLAFSPDGKYAYVVNE-LSNTVSVFDYD  222 (345)
T ss_dssp             -------------STTSSEEEEEE-TTSSEEEEEET-TTTEEEEEEEE
T ss_pred             -------------ccCCCCcEEEEcCCcCEEEEecC-CCCcEEEEeec
Confidence                         14566889999999999887763 57889999886

1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.

>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]

Probab=98.81  E-value=2.1e-06  Score=67.42  Aligned_cols=104  Identities=17%  Similarity=0.265  Sum_probs=85.3

Q ss_pred             cCCcceEEEEEeCCCCEEEeecCCC-eEEEEECCCCeeeeeeecCCCCeeeEEEccCCCEEEEEeCCCeEEEEeCCC---
Q 042146           98 GHTNYVFCINFNPQSNRIVSDTFNE-TIRIWDIKTGKCLKVLPAHSDPVTAIDFNRDGTMIVTSSYDGLYRILDAST---  173 (262)
Q Consensus        98 ~~~~~v~~~~~~~~~~~l~~~~~dg-~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~d~~~---  173 (262)
                      ++...|.-..+..+++-++.|..|| .+-|+|.++++.. .+...-+.|.++..+|+|+.++.+.....+-+.|+.+   
T Consensus       357 ~~~~~VrY~r~~~~~e~~vigt~dgD~l~iyd~~~~e~k-r~e~~lg~I~av~vs~dGK~~vvaNdr~el~vididngnv  435 (668)
T COG4946         357 GKKGGVRYRRIQVDPEGDVIGTNDGDKLGIYDKDGGEVK-RIEKDLGNIEAVKVSPDGKKVVVANDRFELWVIDIDNGNV  435 (668)
T ss_pred             CCCCceEEEEEccCCcceEEeccCCceEEEEecCCceEE-EeeCCccceEEEEEcCCCcEEEEEcCceEEEEEEecCCCe
Confidence            4666788888888888899999999 8999999988754 4455678899999999999999999888888888876   


Q ss_pred             -----------------CCccEEEEEcCCC----eEEEEecCCCceeeEE
Q 042146          174 -----------------PNGKFILVGTLDN----TLRLWNYSTRKILKTY  202 (262)
Q Consensus       174 -----------------~~~~~l~~~~~dg----~i~i~d~~~~~~~~~~  202 (262)
                                       +++++++-+--+|    .|+++|+.+++....-
T Consensus       436 ~~idkS~~~lItdf~~~~nsr~iAYafP~gy~tq~Iklydm~~~Kiy~vT  485 (668)
T COG4946         436 RLIDKSEYGLITDFDWHPNSRWIAYAFPEGYYTQSIKLYDMDGGKIYDVT  485 (668)
T ss_pred             eEecccccceeEEEEEcCCceeEEEecCcceeeeeEEEEecCCCeEEEec
Confidence                             7888999887665    6889999877765443

>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain

Probab=98.80  E-value=5.1e-06  Score=64.78  Aligned_cols=106  Identities=9%  Similarity=0.020  Sum_probs=78.0

Q ss_pred             eEEEEecCCCccceecccCCcceEEEEEeCCCCEEEeecC----------CCeEEEEECCCCeeeeeeecCCC-------
Q 042146           81 TIRLWDVPTATSLKTLIGHTNYVFCINFNPQSNRIVSDTF----------NETIRIWDIKTGKCLKVLPAHSD-------  143 (262)
Q Consensus        81 ~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~----------dg~i~vwd~~~~~~~~~~~~~~~-------  143 (262)
                      .|.+.|..+.+.+..+..-..+- .+ ++||++.++++..          +..|.+||+.+.+.+.++.....       
T Consensus        28 ~v~ViD~~~~~v~g~i~~G~~P~-~~-~spDg~~lyva~~~~~R~~~G~~~d~V~v~D~~t~~~~~~i~~p~~p~~~~~~  105 (352)
T TIGR02658        28 QVYTIDGEAGRVLGMTDGGFLPN-PV-VASDGSFFAHASTVYSRIARGKRTDYVEVIDPQTHLPIADIELPEGPRFLVGT  105 (352)
T ss_pred             eEEEEECCCCEEEEEEEccCCCc-ee-ECCCCCEEEEEeccccccccCCCCCEEEEEECccCcEEeEEccCCCchhhccC
Confidence            57777888888777765433333 24 9999998877655          78999999999999988864222       


Q ss_pred             CeeeEEEccCCCEEEEEe-C-CCeEEEEeCCC---------CCccEEEEEcCCCeE
Q 042146          144 PVTAIDFNRDGTMIVTSS-Y-DGLYRILDAST---------PNGKFILVGTLDNTL  188 (262)
Q Consensus       144 ~v~~~~~~~~~~~l~~~~-~-dg~i~~~d~~~---------~~~~~l~~~~~dg~i  188 (262)
                      .-..++++|||++|++.. . +..|.+.|+..         |++..++..++++..
T Consensus       106 ~~~~~~ls~dgk~l~V~n~~p~~~V~VvD~~~~kvv~ei~vp~~~~vy~t~e~~~~  161 (352)
T TIGR02658       106 YPWMTSLTPDNKTLLFYQFSPSPAVGVVDLEGKAFVRMMDVPDCYHIFPTANDTFF  161 (352)
T ss_pred             ccceEEECCCCCEEEEecCCCCCEEEEEECCCCcEEEEEeCCCCcEEEEecCCccE
Confidence            234789999999888766 4 78999999887         677776666544433

This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.

>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.76  E-value=7e-07  Score=74.07  Aligned_cols=134  Identities=14%  Similarity=0.197  Sum_probs=100.8

Q ss_pred             CceEEEEEccCCCeEEEecCCCeEEEeecCCCCCCCCCCCCCCccccCCccccccceeEEEEecCCCccceecccCCcce
Q 042146           24 RAVSYVKFSHDGRLLTSSSAEKTLLTYSLSSISNFDSTPPSPLQKFTGHEQGISDLATIRLWDVPTATSLKTLIGHTNYV  103 (262)
Q Consensus        24 ~~v~~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~i~v~d~~~~~~~~~~~~~~~~v  103 (262)
                      ..++|++++  +++|+-|+.+|.|++.+.+.                                    .. .+...|... 
T Consensus        40 D~is~~av~--~~~~~~GtH~g~v~~~~~~~------------------------------------~~-~~~~~~s~~-   79 (846)
T KOG2066|consen   40 DAISCCAVH--DKFFALGTHRGAVYLTTCQG------------------------------------NP-KTNFDHSSS-   79 (846)
T ss_pred             hHHHHHHhh--cceeeeccccceEEEEecCC------------------------------------cc-ccccccccc-
Confidence            456666664  56899999999999886543                                    22 222233332 


Q ss_pred             EEEEEeCCCCEEEeecCCCeEEEEECCCCeeeeeeecCCCCeeeEEEccC-----CCEEEEEeCCCeEEEEeCCC-----
Q 042146          104 FCINFNPQSNRIVSDTFNETIRIWDIKTGKCLKVLPAHSDPVTAIDFNRD-----GTMIVTSSYDGLYRILDAST-----  173 (262)
Q Consensus       104 ~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~-----~~~l~~~~~dg~i~~~d~~~-----  173 (262)
                           ..+|.++++++.||+|.|-.+-+.+....+. ...++.+++++|+     .+++++|+.-| +.++.-+-     
T Consensus        80 -----~~~Gey~asCS~DGkv~I~sl~~~~~~~~~d-f~rpiksial~Pd~~~~~sk~fv~GG~ag-lvL~er~wlgnk~  152 (846)
T KOG2066|consen   80 -----ILEGEYVASCSDDGKVVIGSLFTDDEITQYD-FKRPIKSIALHPDFSRQQSKQFVSGGMAG-LVLSERNWLGNKD  152 (846)
T ss_pred             -----ccCCceEEEecCCCcEEEeeccCCccceeEe-cCCcceeEEeccchhhhhhhheeecCcce-EEEehhhhhcCcc
Confidence                 5689999999999999999988887777665 4678999999997     56899999888 77765332     


Q ss_pred             ---------------CCccEEEEEcCCCeEEEEecCCCceeeEEecc
Q 042146          174 ---------------PNGKFILVGTLDNTLRLWNYSTRKILKTYSGY  205 (262)
Q Consensus       174 ---------------~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~  205 (262)
                                     -.|+++|-++.+| |++||..+++.+..++..
T Consensus       153 ~v~l~~~eG~I~~i~W~g~lIAWand~G-v~vyd~~~~~~l~~i~~p  198 (846)
T KOG2066|consen  153 SVVLSEGEGPIHSIKWRGNLIAWANDDG-VKVYDTPTRQRLTNIPPP  198 (846)
T ss_pred             ceeeecCccceEEEEecCcEEEEecCCC-cEEEeccccceeeccCCC
Confidence                           3578888888777 899999988888777653

>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A

Probab=98.73  E-value=8e-06  Score=61.03  Aligned_cols=123  Identities=24%  Similarity=0.234  Sum_probs=84.2

Q ss_pred             eEEEEecCCCccceecccC--CcceEEEEEeCCCCEEEeecCCCeEEEEECCCCeeeeeeecCCCCeeeEEEccCCCEEE
Q 042146           81 TIRLWDVPTATSLKTLIGH--TNYVFCINFNPQSNRIVSDTFNETIRIWDIKTGKCLKVLPAHSDPVTAIDFNRDGTMIV  158 (262)
Q Consensus        81 ~i~v~d~~~~~~~~~~~~~--~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~  158 (262)
                      .|..+|..+++.+....-.  .....+. ..+++..+++++.++.|..||..+++.+..+.. ..++.... ...+..++
T Consensus         4 ~l~~~d~~tG~~~W~~~~~~~~~~~~~~-~~~~~~~v~~~~~~~~l~~~d~~tG~~~W~~~~-~~~~~~~~-~~~~~~v~   80 (238)
T PF13360_consen    4 TLSALDPRTGKELWSYDLGPGIGGPVAT-AVPDGGRVYVASGDGNLYALDAKTGKVLWRFDL-PGPISGAP-VVDGGRVY   80 (238)
T ss_dssp             EEEEEETTTTEEEEEEECSSSCSSEEET-EEEETTEEEEEETTSEEEEEETTTSEEEEEEEC-SSCGGSGE-EEETTEEE
T ss_pred             EEEEEECCCCCEEEEEECCCCCCCccce-EEEeCCEEEEEcCCCEEEEEECCCCCEEEEeec-ccccccee-eecccccc
Confidence            4566677777777665421  1111211 233567777778899999999999999888875 33322222 22455667


Q ss_pred             EEeCCCeEEEEeCCC------------------------CCccEEEEEcCCCeEEEEecCCCceeeEEeccC
Q 042146          159 TSSYDGLYRILDAST------------------------PNGKFILVGTLDNTLRLWNYSTRKILKTYSGYT  206 (262)
Q Consensus       159 ~~~~dg~i~~~d~~~------------------------~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~  206 (262)
                      .++.++.+..+|..+                        ..+..++++..++.|..+|+++|+.+.......
T Consensus        81 v~~~~~~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~tG~~~w~~~~~~  152 (238)
T PF13360_consen   81 VGTSDGSLYALDAKTGKVLWSIYLTSSPPAGVRSSSSPAVDGDRLYVGTSSGKLVALDPKTGKLLWKYPVGE  152 (238)
T ss_dssp             EEETTSEEEEEETTTSCEEEEEEE-SSCTCSTB--SEEEEETTEEEEEETCSEEEEEETTTTEEEEEEESST
T ss_pred             cccceeeeEecccCCcceeeeeccccccccccccccCceEecCEEEEEeccCcEEEEecCCCcEEEEeecCC
Confidence            777788888888655                        135678888889999999999999988887644

...

>KOG4714 consensus Nucleoporin [Nuclear structure]

Probab=98.73  E-value=7.1e-08  Score=69.59  Aligned_cols=127  Identities=18%  Similarity=0.299  Sum_probs=84.5

Q ss_pred             cCceEEEEEccC-CCeEEEecCCCeEEEeecCCCCCCCCCCCCCCccccCCccccccceeEEEEecCCCccceecccCCc
Q 042146           23 LRAVSYVKFSHD-GRLLTSSSAEKTLLTYSLSSISNFDSTPPSPLQKFTGHEQGISDLATIRLWDVPTATSLKTLIGHTN  101 (262)
Q Consensus        23 ~~~v~~~~~~~~-~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~i~v~d~~~~~~~~~~~~~~~  101 (262)
                      ...|.+++-+|. ...+++|+.||.+.+||..+.                                  ..+...++.|+.
T Consensus       179 ~~~v~~l~~hp~qq~~v~cgt~dg~~~l~d~rn~----------------------------------~~p~S~l~ahk~  224 (319)
T KOG4714|consen  179 LDAVTALCSHPAQQHLVCCGTDDGIVGLWDARNV----------------------------------AMPVSLLKAHKA  224 (319)
T ss_pred             cccchhhhCCcccccEEEEecCCCeEEEEEcccc----------------------------------cchHHHHHHhhh
Confidence            345999999995 457788899999999976531                                  234556788999


Q ss_pred             ceEEEEEeC-CCCEEEeecCCCeEEEEECCCCeeeeeee--------cCCCCeee-EEEccCCCEEEEEeCCCeEEEEeC
Q 042146          102 YVFCINFNP-QSNRIVSDTFNETIRIWDIKTGKCLKVLP--------AHSDPVTA-IDFNRDGTMIVTSSYDGLYRILDA  171 (262)
Q Consensus       102 ~v~~~~~~~-~~~~l~~~~~dg~i~vwd~~~~~~~~~~~--------~~~~~v~~-~~~~~~~~~l~~~~~dg~i~~~d~  171 (262)
                      +++.+-|+| ++..|+++++||.+..||..+ +.+..-.        -...++.+ +...+     +--+....|.-||+
T Consensus       225 ~i~eV~FHpk~p~~Lft~sedGslw~wdas~-~~l~i~~~~s~~s~WLsgD~v~s~i~i~~-----ll~~~~~SinsfDV  298 (319)
T KOG4714|consen  225 EIWEVHFHPKNPEHLFTCSEDGSLWHWDAST-TFLSISNQASVISSWLSGDPVKSRIEITS-----LLPSRSLSINSFDV  298 (319)
T ss_pred             hhhheeccCCCchheeEecCCCcEEEEcCCC-ceEEecCccccccccccCCcccceEeeec-----cccccceeeeeeec
Confidence            999999999 788999999999999999764 3332110        01122222 22221     00111223445555


Q ss_pred             CCCCccEEEEEcCCCeEEEEe
Q 042146          172 STPNGKFILVGTLDNTLRLWN  192 (262)
Q Consensus       172 ~~~~~~~l~~~~~dg~i~i~d  192 (262)
                      .   +..|++|+.-+.|++++
T Consensus       299 ~---g~~lVcgtd~eaIyl~~  316 (319)
T KOG4714|consen  299 L---GPCLVCGTDAEAIYLTR  316 (319)
T ss_pred             c---CceEEeccccceEEEec
Confidence            4   67888888888888875

>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]

Probab=98.73  E-value=3.4e-06  Score=66.59  Aligned_cols=208  Identities=16%  Similarity=0.184  Sum_probs=122.7

Q ss_pred             cceecccCcCceEEEEEccCCCeEEEecCCCeEEEeecCCCCCCCCCCCCCCccccCCccccccceeEEEEecCCCccce
Q 042146           15 LTQTLNGHLRAVSYVKFSHDGRLLTSSSAEKTLLTYSLSSISNFDSTPPSPLQKFTGHEQGISDLATIRLWDVPTATSLK   94 (262)
Q Consensus        15 ~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~i~v~d~~~~~~~~   94 (262)
                      .-..+..-.-++....|||.|.+|++.... .|.+|                                   .-..+..+.
T Consensus        24 ~~~~~~~~~~p~~~~~~SP~G~~l~~~~~~-~V~~~-----------------------------------~g~~~~~l~   67 (561)
T COG5354          24 IHTRFESENWPVAYVSESPLGTYLFSEHAA-GVECW-----------------------------------GGPSKAKLV   67 (561)
T ss_pred             ccccccccCcchhheeecCcchheehhhcc-ceEEc-----------------------------------cccchhhee
Confidence            444454466789999999999999987654 34555                                   434444444


Q ss_pred             ecccCCcceEEEEEeCCCCEEEeecCCC---------------eEEEEECCCCeeeeeeecCCCC--ee-eEEEccCCCE
Q 042146           95 TLIGHTNYVFCINFNPQSNRIVSDTFNE---------------TIRIWDIKTGKCLKVLPAHSDP--VT-AIDFNRDGTM  156 (262)
Q Consensus        95 ~~~~~~~~v~~~~~~~~~~~l~~~~~dg---------------~i~vwd~~~~~~~~~~~~~~~~--v~-~~~~~~~~~~  156 (262)
                      .+.  ...|..+.|+|.+++|.+=+..+               .+.+||..++..+..+.....+  .. -+.|+-+.++
T Consensus        68 ~~~--~~~V~~~~fSP~~kYL~tw~~~pi~~pe~e~sp~~~~n~~~vwd~~sg~iv~sf~~~~q~~~~Wp~~k~s~~D~y  145 (561)
T COG5354          68 RFR--HPDVKYLDFSPNEKYLVTWSREPIIEPEIEISPFTSKNNVFVWDIASGMIVFSFNGISQPYLGWPVLKFSIDDKY  145 (561)
T ss_pred             eee--cCCceecccCcccceeeeeccCCccChhhccCCccccCceeEEeccCceeEeeccccCCcccccceeeeeecchh
Confidence            443  23577888888888888755433               4999999999988888765554  44 6777776665


Q ss_pred             EEEEeCCCeEEEEeCCC---------------------C--CccEEEE-----EcCCCeEEEEecCCCceeeEEeccC--
Q 042146          157 IVTSSYDGLYRILDAST---------------------P--NGKFILV-----GTLDNTLRLWNYSTRKILKTYSGYT--  206 (262)
Q Consensus       157 l~~~~~dg~i~~~d~~~---------------------~--~~~~l~~-----~~~dg~i~i~d~~~~~~~~~~~~~~--  206 (262)
                      .+-- ....++++++..                     |  ++..|+.     ....+.+++|.+..+..+.+-.-..  
T Consensus       146 ~ARv-v~~sl~i~e~t~n~~~~p~~~lr~~gi~dFsisP~~n~~~la~~tPEk~~kpa~~~i~sIp~~s~l~tk~lfk~~  224 (561)
T COG5354         146 VARV-VGSSLYIHEITDNIEEHPFKNLRPVGILDFSISPEGNHDELAYWTPEKLNKPAMVRILSIPKNSVLVTKNLFKVS  224 (561)
T ss_pred             hhhh-ccCeEEEEecCCccccCchhhccccceeeEEecCCCCCceEEEEccccCCCCcEEEEEEccCCCeeeeeeeEeec
Confidence            5443 344577787522                     1  2223332     2345667777776554443221100  


Q ss_pred             ---------CceeEEEEE--E-----------------ecCCCeeEEccccceEEEEEcCCCCeEEEeeecCCCcEEEEe
Q 042146          207 ---------NSKYCISST--F-----------------SVTNGKYIVSHRDPVISVASHPAKNIIASGALDNDRTMKIWT  258 (262)
Q Consensus       207 ---------~~~~~~~~~--~-----------------~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~d~d~~i~iw~  258 (262)
                               +...++...  +                 ...+......-.++|...+|.|.++.+++.+.-.+-.+.+++
T Consensus       225 ~~qLkW~~~g~~ll~l~~t~~ksnKsyfgesnLyl~~~~e~~i~V~~~~~~pVhdf~W~p~S~~F~vi~g~~pa~~s~~~  304 (561)
T COG5354         225 GVQLKWQVLGKYLLVLVMTHTKSNKSYFGESNLYLLRITERSIPVEKDLKDPVHDFTWEPLSSRFAVISGYMPASVSVFD  304 (561)
T ss_pred             ccEEEEecCCceEEEEEEEeeecccceeccceEEEEeecccccceeccccccceeeeecccCCceeEEecccccceeecc
Confidence                     001111100  0                 001111111247899999999999887766521466677776


Q ss_pred             ecc
Q 042146          259 QEK  261 (262)
Q Consensus       259 ~~~  261 (262)
                      +..
T Consensus       305 lr~  307 (561)
T COG5354         305 LRG  307 (561)
T ss_pred             ccc
Confidence            653

>PLN02919 haloacid dehalogenase-like hydrolase family protein

Probab=98.72  E-value=1.2e-05  Score=72.18  Aligned_cols=156  Identities=12%  Similarity=0.084  Sum_probs=92.3

Q ss_pred             ceEEEEEeCCCCEEEeec-CCCeEEEEECCCCeeeeeeecC-----------------CCCeeeEEEcc-CCCEEEEEeC
Q 042146          102 YVFCINFNPQSNRIVSDT-FNETIRIWDIKTGKCLKVLPAH-----------------SDPVTAIDFNR-DGTMIVTSSY  162 (262)
Q Consensus       102 ~v~~~~~~~~~~~l~~~~-~dg~i~vwd~~~~~~~~~~~~~-----------------~~~v~~~~~~~-~~~~l~~~~~  162 (262)
                      ....++++++++.|+++. ..+.|+++|+.++. +.++.+-                 -..-..++++| ++.++++.+.
T Consensus       625 ~P~GIavd~~gn~LYVaDt~n~~Ir~id~~~~~-V~tlag~G~~g~~~~gg~~~~~~~ln~P~gVa~dp~~g~LyVad~~  703 (1057)
T PLN02919        625 RPQGLAYNAKKNLLYVADTENHALREIDFVNET-VRTLAGNGTKGSDYQGGKKGTSQVLNSPWDVCFEPVNEKVYIAMAG  703 (1057)
T ss_pred             CCcEEEEeCCCCEEEEEeCCCceEEEEecCCCE-EEEEeccCcccCCCCCChhhhHhhcCCCeEEEEecCCCeEEEEECC
Confidence            356889999888665544 45689999987765 3333110                 01236799999 5666677777


Q ss_pred             CCeEEEEeCCC----------------------------------CCcc-EEEEEcCCCeEEEEecCCCceeeEEeccCC
Q 042146          163 DGLYRILDAST----------------------------------PNGK-FILVGTLDNTLRLWNYSTRKILKTYSGYTN  207 (262)
Q Consensus       163 dg~i~~~d~~~----------------------------------~~~~-~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~  207 (262)
                      ++.|++||...                                  ++++ .+++.+.++.|++||+.++.......+.. 
T Consensus       704 ~~~I~v~d~~~g~v~~~~G~G~~~~~~g~~~~~~~~~~P~GIavspdG~~LYVADs~n~~Irv~D~~tg~~~~~~gg~~-  782 (1057)
T PLN02919        704 QHQIWEYNISDGVTRVFSGDGYERNLNGSSGTSTSFAQPSGISLSPDLKELYIADSESSSIRALDLKTGGSRLLAGGDP-  782 (1057)
T ss_pred             CCeEEEEECCCCeEEEEecCCccccCCCCccccccccCccEEEEeCCCCEEEEEECCCCeEEEEECCCCcEEEEEeccc-
Confidence            88898888632                                  4555 44555667899999988765322111100 


Q ss_pred             ceeEEEEEEecCCCeeEEccccceEEEEEcCCCCeEEEeeecCCCcEEEEeecc
Q 042146          208 SKYCISSTFSVTNGKYIVSHRDPVISVASHPAKNIIASGALDNDRTMKIWTQEK  261 (262)
Q Consensus       208 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~d~d~~i~iw~~~~  261 (262)
                      ........+...++......-.....++++|+|.++++-+  .++.|++|+.+.
T Consensus       783 ~~~~~l~~fG~~dG~g~~~~l~~P~Gvavd~dG~LYVADs--~N~rIrviD~~t  834 (1057)
T PLN02919        783 TFSDNLFKFGDHDGVGSEVLLQHPLGVLCAKDGQIYVADS--YNHKIKKLDPAT  834 (1057)
T ss_pred             ccCcccccccCCCCchhhhhccCCceeeEeCCCcEEEEEC--CCCEEEEEECCC
Confidence            0000000000000000000112346899999999888877  789999999753

>COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]

Probab=98.71  E-value=3e-07  Score=68.23  Aligned_cols=75  Identities=9%  Similarity=0.237  Sum_probs=56.7

Q ss_pred             CCcceEEEEEeCCCCEEEeecCCCeEEEEECCCCe-----eeeeeecCC------------CCeeeEEEccCC--CEEEE
Q 042146           99 HTNYVFCINFNPQSNRIVSDTFNETIRIWDIKTGK-----CLKVLPAHS------------DPVTAIDFNRDG--TMIVT  159 (262)
Q Consensus        99 ~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~-----~~~~~~~~~------------~~v~~~~~~~~~--~~l~~  159 (262)
                      ....|+++.|...|.++++|...|.|.+|.-+...     ...+++.|.            ..|..+.|..++  ..++.
T Consensus        25 ead~ItaVefd~tg~YlatGDkgGRVvlfer~~s~~ceykf~teFQshe~EFDYLkSleieEKin~I~w~~~t~r~hFLl  104 (460)
T COG5170          25 EADKITAVEFDETGLYLATGDKGGRVVLFEREKSYGCEYKFFTEFQSHELEFDYLKSLEIEEKINAIEWFDDTGRNHFLL  104 (460)
T ss_pred             ccceeeEEEeccccceEeecCCCceEEEeecccccccchhhhhhhcccccchhhhhhccHHHHhhheeeecCCCcceEEE
Confidence            34679999999999999999999999999754322     223344443            357888887644  47888


Q ss_pred             EeCCCeEEEEeCCC
Q 042146          160 SSYDGLYRILDAST  173 (262)
Q Consensus       160 ~~~dg~i~~~d~~~  173 (262)
                      .+.|++|++|.+..
T Consensus       105 stNdktiKlWKiye  118 (460)
T COG5170         105 STNDKTIKLWKIYE  118 (460)
T ss_pred             ecCCceeeeeeeec
Confidence            89999999999765

>KOG1912 consensus WD40 repeat protein [General function prediction only]

Probab=98.70  E-value=1.5e-06  Score=72.15  Aligned_cols=139  Identities=16%  Similarity=0.174  Sum_probs=97.3

Q ss_pred             EEEEecCCCccceecccCCcceEEEEEeCC------------CCEEEeecCCCeEEEEECCCCeeeeeeecCCCCeeeEE
Q 042146           82 IRLWDVPTATSLKTLIGHTNYVFCINFNPQ------------SNRIVSDTFNETIRIWDIKTGKCLKVLPAHSDPVTAID  149 (262)
Q Consensus        82 i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~------------~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~  149 (262)
                      |.+.|..+.+.++.+..|+..|+.+.|.|-            .-+++++...|.|.+||...+..+..+..|..++.+++
T Consensus        37 V~VVDs~s~q~iqsie~h~s~V~~VrWap~~~p~~llS~~~~~lliAsaD~~GrIil~d~~~~s~~~~l~~~~~~~qdl~  116 (1062)
T KOG1912|consen   37 VSVVDSRSLQLIQSIELHQSAVTSVRWAPAPSPRDLLSPSSSQLLIASADISGRIILVDFVLASVINWLSHSNDSVQDLC  116 (1062)
T ss_pred             EEEEehhhhhhhhccccCccceeEEEeccCCCchhccCccccceeEEeccccCcEEEEEehhhhhhhhhcCCCcchhhee
Confidence            566677888889999999999999999872            12477888889999999999988888888999999999


Q ss_pred             EccCCCEEEEEeCCCeEEEEeCCCCCccEEEEEcCCCeEEEEecCCCceeeEEeccCCceeEEEEEEecCCCeeEEcccc
Q 042146          150 FNRDGTMIVTSSYDGLYRILDASTPNGKFILVGTLDNTLRLWNYSTRKILKTYSGYTNSKYCISSTFSVTNGKYIVSHRD  229 (262)
Q Consensus       150 ~~~~~~~l~~~~~dg~i~~~d~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  229 (262)
                      |-|...                  ....+|++-.....+.+|+..+|+.........+...|..+-+.......+.+.++
T Consensus       117 W~~~rd------------------~Srd~LlaIh~ss~lvLwntdtG~k~Wk~~ys~~iLs~f~~DPfd~rh~~~l~s~g  178 (1062)
T KOG1912|consen  117 WVPARD------------------DSRDVLLAIHGSSTLVLWNTDTGEKFWKYDYSHEILSCFRVDPFDSRHFCVLGSKG  178 (1062)
T ss_pred             eeeccC------------------cchheeEEecCCcEEEEEEccCCceeeccccCCcceeeeeeCCCCcceEEEEccCc
Confidence            977321                  01133444455567788888888887777664444444444444444444445555


Q ss_pred             ceEEEEEcC
Q 042146          230 PVISVASHP  238 (262)
Q Consensus       230 ~v~~~~~~p  238 (262)
                      .+..+.+.+
T Consensus       179 ~vl~~~~l~  187 (1062)
T KOG1912|consen  179 FVLSCKDLG  187 (1062)
T ss_pred             eEEEEeccC
Confidence            555555543

>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A

Probab=98.64  E-value=1.5e-05  Score=59.59  Aligned_cols=166  Identities=19%  Similarity=0.183  Sum_probs=102.2

Q ss_pred             cCCCeEEEecCCCeEEEeecCCCCCC-CCCCCCCCccc-cCCccccc---cceeEEEEecCCCccceec-ccCC---cce
Q 042146           33 HDGRLLTSSSAEKTLLTYSLSSISNF-DSTPPSPLQKF-TGHEQGIS---DLATIRLWDVPTATSLKTL-IGHT---NYV  103 (262)
Q Consensus        33 ~~~~~l~s~~~d~~i~iw~~~~~~~~-~~~~~~~~~~~-~~~~~~v~---~~~~i~v~d~~~~~~~~~~-~~~~---~~v  103 (262)
                      +++..+++++.++.|..||..+.+.. ........... ......+.   ..+.+..+|..+++.+... ....   ...
T Consensus        34 ~~~~~v~~~~~~~~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~v~v~~~~~~l~~~d~~tG~~~W~~~~~~~~~~~~~  113 (238)
T PF13360_consen   34 PDGGRVYVASGDGNLYALDAKTGKVLWRFDLPGPISGAPVVDGGRVYVGTSDGSLYALDAKTGKVLWSIYLTSSPPAGVR  113 (238)
T ss_dssp             EETTEEEEEETTSEEEEEETTTSEEEEEEECSSCGGSGEEEETTEEEEEETTSEEEEEETTTSCEEEEEEE-SSCTCSTB
T ss_pred             EeCCEEEEEcCCCEEEEEECCCCCEEEEeeccccccceeeecccccccccceeeeEecccCCcceeeeeccccccccccc
Confidence            35667777789999999998665321 11111111111 11111111   1237999999999988873 3221   112


Q ss_pred             EEEEEeCCCCEEEeecCCCeEEEEECCCCeeeeeeecCCCCe-----------eeEEEccCCCEEEEEeCCCe-EEEEeC
Q 042146          104 FCINFNPQSNRIVSDTFNETIRIWDIKTGKCLKVLPAHSDPV-----------TAIDFNRDGTMIVTSSYDGL-YRILDA  171 (262)
Q Consensus       104 ~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~v-----------~~~~~~~~~~~l~~~~~dg~-i~~~d~  171 (262)
                      ..+.....+..++++..++.|..+|+++|+.+..........           ..+.+. ++ .++.++.++. +.+ |+
T Consensus       114 ~~~~~~~~~~~~~~~~~~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~-~~-~v~~~~~~g~~~~~-d~  190 (238)
T PF13360_consen  114 SSSSPAVDGDRLYVGTSSGKLVALDPKTGKLLWKYPVGEPRGSSPISSFSDINGSPVIS-DG-RVYVSSGDGRVVAV-DL  190 (238)
T ss_dssp             --SEEEEETTEEEEEETCSEEEEEETTTTEEEEEEESSTT-SS--EEEETTEEEEEECC-TT-EEEEECCTSSEEEE-ET
T ss_pred             cccCceEecCEEEEEeccCcEEEEecCCCcEEEEeecCCCCCCcceeeecccccceEEE-CC-EEEEEcCCCeEEEE-EC
Confidence            233333348888888889999999999999988886644221           122222 33 6666666664 444 65


Q ss_pred             CC-----------------CCccEEEEEcCCCeEEEEecCCCceeeE
Q 042146          172 ST-----------------PNGKFILVGTLDNTLRLWNYSTRKILKT  201 (262)
Q Consensus       172 ~~-----------------~~~~~l~~~~~dg~i~i~d~~~~~~~~~  201 (262)
                      .+                 ..+..|+.++.++.|..||+++|+.+..
T Consensus       191 ~tg~~~w~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~d~~tG~~~W~  237 (238)
T PF13360_consen  191 ATGEKLWSKPISGIYSLPSVDGGTLYVTSSDGRLYALDLKTGKVVWQ  237 (238)
T ss_dssp             TTTEEEEEECSS-ECECEECCCTEEEEEETTTEEEEEETTTTEEEEE
T ss_pred             CCCCEEEEecCCCccCCceeeCCEEEEEeCCCEEEEEECCCCCEEeE
Confidence            54                 5667788777999999999999987653

...

>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]

Probab=98.61  E-value=5.4e-08  Score=81.52  Aligned_cols=110  Identities=25%  Similarity=0.405  Sum_probs=89.4

Q ss_pred             ceecccCCcceEEEEEeCCCCEEEeecCCCeEEEEECCCCeeeeeeecCCCCeeeEEEccCCCEEEEEeCCC--eEEEEe
Q 042146           93 LKTLIGHTNYVFCINFNPQSNRIVSDTFNETIRIWDIKTGKCLKVLPAHSDPVTAIDFNRDGTMIVTSSYDG--LYRILD  170 (262)
Q Consensus        93 ~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg--~i~~~d  170 (262)
                      .+.+..|....+|++|+.+.+.|+.|+..|.|+++++.+|.......+|.++|+-+.=+.+|..+++.+.-.  -..+|+
T Consensus      1094 w~~frd~~~~fTc~afs~~~~hL~vG~~~Geik~~nv~sG~~e~s~ncH~SavT~vePs~dgs~~Ltsss~S~PlsaLW~ 1173 (1516)
T KOG1832|consen 1094 WRSFRDETALFTCIAFSGGTNHLAVGSHAGEIKIFNVSSGSMEESVNCHQSAVTLVEPSVDGSTQLTSSSSSSPLSALWD 1173 (1516)
T ss_pred             chhhhccccceeeEEeecCCceEEeeeccceEEEEEccCccccccccccccccccccccCCcceeeeeccccCchHHHhc
Confidence            345667888999999999999999999999999999999999999999999999999888998777665433  467898


Q ss_pred             CCC-----------------CCccEEEEEcCCCeEEEEecCCCceeeEE
Q 042146          171 AST-----------------PNGKFILVGTLDNTLRLWNYSTRKILKTY  202 (262)
Q Consensus       171 ~~~-----------------~~~~~l~~~~~dg~i~i~d~~~~~~~~~~  202 (262)
                      +.+                 ..-..-+.|+......+||+.++.++.++
T Consensus      1174 ~~s~~~~~Hsf~ed~~vkFsn~~q~r~~gt~~d~a~~YDvqT~~~l~ty 1222 (1516)
T KOG1832|consen 1174 ASSTGGPRHSFDEDKAVKFSNSLQFRALGTEADDALLYDVQTCSPLQTY 1222 (1516)
T ss_pred             cccccCccccccccceeehhhhHHHHHhcccccceEEEecccCcHHHHh
Confidence            876                 11223345565667889999999888774

>KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]

Probab=98.60  E-value=4.6e-07  Score=70.38  Aligned_cols=192  Identities=10%  Similarity=0.097  Sum_probs=126.8

Q ss_pred             cCcCceEEEEEccCCCeEEEecCCCeEEEeecCCCCCCCCCCCCCCccccCCccccccceeEEEEecCCCccceecccCC
Q 042146           21 GHLRAVSYVKFSHDGRLLTSSSAEKTLLTYSLSSISNFDSTPPSPLQKFTGHEQGISDLATIRLWDVPTATSLKTLIGHT  100 (262)
Q Consensus        21 ~h~~~v~~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~i~v~d~~~~~~~~~~~~~~  100 (262)
                      -|...|+-+.- ...+++++++.||.++.|.-..                                +..-+.+..+..|.
T Consensus         7 mhrd~i~hv~~-tka~fiiqASlDGh~KFWkKs~--------------------------------isGvEfVKhFraHL   53 (558)
T KOG0882|consen    7 MHRDVITHVFP-TKAKFIIQASLDGHKKFWKKSR--------------------------------ISGVEFVKHFRAHL   53 (558)
T ss_pred             cccceeeeEee-ehhheEEeeecchhhhhcCCCC--------------------------------ccceeehhhhHHHH
Confidence            36666766543 4567999999999999993211                                01123445567788


Q ss_pred             cceEEEEEeCCCCEEEeecC-CCeEEEEECCCCeeeeeeecC--CCCeeeEEEccC-C-CEEEE-EeCCCeEEEEeCCC-
Q 042146          101 NYVFCINFNPQSNRIVSDTF-NETIRIWDIKTGKCLKVLPAH--SDPVTAIDFNRD-G-TMIVT-SSYDGLYRILDAST-  173 (262)
Q Consensus       101 ~~v~~~~~~~~~~~l~~~~~-dg~i~vwd~~~~~~~~~~~~~--~~~v~~~~~~~~-~-~~l~~-~~~dg~i~~~d~~~-  173 (262)
                      ..|.+++.+-++.++.+.+. |..++++|+++-..+..++..  .+.+ +...+|. . ..+++ ...++.+.++|-+. 
T Consensus        54 ~~I~sl~~S~dg~L~~Sv~d~Dhs~KvfDvEn~DminmiKL~~lPg~a-~wv~skGd~~s~IAVs~~~sg~i~VvD~~~d  132 (558)
T KOG0882|consen   54 GVILSLAVSYDGWLFRSVEDPDHSVKVFDVENFDMINMIKLVDLPGFA-EWVTSKGDKISLIAVSLFKSGKIFVVDGFGD  132 (558)
T ss_pred             HHHHhhhccccceeEeeccCcccceeEEEeeccchhhhcccccCCCce-EEecCCCCeeeeEEeecccCCCcEEECCcCC
Confidence            99999999999999999887 999999999876655443321  2222 1222331 1 13333 34678899998665 


Q ss_pred             ---------------------CCccEEEEEcCCCeEEEEecCC------CceeeEEeccCCceeEEEEEEecCCCeeEEc
Q 042146          174 ---------------------PNGKFILVGTLDNTLRLWNYST------RKILKTYSGYTNSKYCISSTFSVTNGKYIVS  226 (262)
Q Consensus       174 ---------------------~~~~~l~~~~~dg~i~i~d~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  226 (262)
                                           +.+..+++....|-|.-|..+.      .+....++...             +-.-+.-
T Consensus       133 ~~q~~~fkklH~sPV~~i~y~qa~Ds~vSiD~~gmVEyWs~e~~~qfPr~~l~~~~K~eT-------------dLy~f~K  199 (558)
T KOG0882|consen  133 FCQDGYFKKLHFSPVKKIRYNQAGDSAVSIDISGMVEYWSAEGPFQFPRTNLNFELKHET-------------DLYGFPK  199 (558)
T ss_pred             cCccceecccccCceEEEEeeccccceeeccccceeEeecCCCcccCccccccccccccc-------------hhhcccc
Confidence                                 5667788888889999998762      11111111100             0000111


Q ss_pred             cccceEEEEEcCCCCeEEEeeecCCCcEEEEeecc
Q 042146          227 HRDPVISVASHPAKNIIASGALDNDRTMKIWTQEK  261 (262)
Q Consensus       227 ~~~~v~~~~~~p~~~~l~~~~~d~d~~i~iw~~~~  261 (262)
                      .+....++.|+|++..+.+-+  .|..|+++....
T Consensus       200 ~Kt~pts~Efsp~g~qistl~--~DrkVR~F~~Kt  232 (558)
T KOG0882|consen  200 AKTEPTSFEFSPDGAQISTLN--PDRKVRGFVFKT  232 (558)
T ss_pred             cccCccceEEccccCcccccC--cccEEEEEEecc
Confidence            566788999999999999999  899999998764

>KOG3621 consensus WD40 repeat-containing protein [General function prediction only]

Probab=98.59  E-value=1.1e-05  Score=66.24  Aligned_cols=117  Identities=12%  Similarity=0.162  Sum_probs=85.0

Q ss_pred             CcCceEEEEEccCCCeEEEecCCCeEEEeecCCCCCCCCCCCCCCccccCCccccccceeEEEEecCCCccce-ecccCC
Q 042146           22 HLRAVSYVKFSHDGRLLTSSSAEKTLLTYSLSSISNFDSTPPSPLQKFTGHEQGISDLATIRLWDVPTATSLK-TLIGHT  100 (262)
Q Consensus        22 h~~~v~~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~i~v~d~~~~~~~~-~~~~~~  100 (262)
                      |...|.--++...+++++.|+.-|.+.+|+-..                                   +.... ...+..
T Consensus        32 ~~~~v~lTc~dst~~~l~~GsS~G~lyl~~R~~-----------------------------------~~~~~~~~~~~~   76 (726)
T KOG3621|consen   32 FPARVKLTCVDATEEYLAMGSSAGSVYLYNRHT-----------------------------------GEMRKLKNEGAT   76 (726)
T ss_pred             CcceEEEEEeecCCceEEEecccceEEEEecCc-----------------------------------hhhhcccccCcc
Confidence            445566566677889999999999998885422                                   11111 111233


Q ss_pred             cceEEEEEeCCCCEEEeecCCCeEEEEECCCCeeee-----ee-ecCCCCeeeEEEccCCCEEEEEeCCCeEEEEeCCC
Q 042146          101 NYVFCINFNPQSNRIVSDTFNETIRIWDIKTGKCLK-----VL-PAHSDPVTAIDFNRDGTMIVTSSYDGLYRILDAST  173 (262)
Q Consensus       101 ~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~-----~~-~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~d~~~  173 (262)
                      +.+..+.++++..++|+|+..|.|.++-++.+.+..     .. +.|...|++++|++++..+++|...|+|.+-.+..
T Consensus        77 ~~~~~~~vs~~e~lvAagt~~g~V~v~ql~~~~p~~~~~~t~~d~~~~~rVTal~Ws~~~~k~ysGD~~Gkv~~~~L~s  155 (726)
T KOG3621|consen   77 GITCVRSVSSVEYLVAAGTASGRVSVFQLNKELPRDLDYVTPCDKSHKCRVTALEWSKNGMKLYSGDSQGKVVLTELDS  155 (726)
T ss_pred             ceEEEEEecchhHhhhhhcCCceEEeehhhccCCCcceeeccccccCCceEEEEEecccccEEeecCCCceEEEEEech
Confidence            456667788888999999999999999887643211     11 23678999999999999999999999988776554

>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats

Probab=98.59  E-value=3.3e-07  Score=73.62  Aligned_cols=74  Identities=23%  Similarity=0.350  Sum_probs=62.3

Q ss_pred             cCCcceEEEEEeCCCCEEEeecCCCeEEEEECCCCeeeeeeecCCCCeeeEEEccCCCEEEEEeCCCeEEEEeCCC
Q 042146           98 GHTNYVFCINFNPQSNRIVSDTFNETIRIWDIKTGKCLKVLPAHSDPVTAIDFNRDGTMIVTSSYDGLYRILDAST  173 (262)
Q Consensus        98 ~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~d~~~  173 (262)
                      .....+.|.+++|+...++.|+.||.|.+||...+...  .....-..+.++|+|+|..+++|+..|.+.+||+.-
T Consensus       257 pL~s~v~~ca~sp~E~kLvlGC~DgSiiLyD~~~~~t~--~~ka~~~P~~iaWHp~gai~~V~s~qGelQ~FD~AL  330 (545)
T PF11768_consen  257 PLPSQVICCARSPSEDKLVLGCEDGSIILYDTTRGVTL--LAKAEFIPTLIAWHPDGAIFVVGSEQGELQCFDMAL  330 (545)
T ss_pred             ecCCcceEEecCcccceEEEEecCCeEEEEEcCCCeee--eeeecccceEEEEcCCCcEEEEEcCCceEEEEEeec
Confidence            46678999999999999999999999999998766332  223455678999999999999999999999999764

>PRK04043 tolB translocation protein TolB; Provisional

Probab=98.59  E-value=3.8e-05  Score=62.21  Aligned_cols=120  Identities=13%  Similarity=0.167  Sum_probs=77.1

Q ss_pred             ceEEEEEeCCCCE-EEeecC---CCeEEEEECCCCeeeeeeecCCCCeeeEEEccCCCEEEEE-eCC--CeEEEEeCCC-
Q 042146          102 YVFCINFNPQSNR-IVSDTF---NETIRIWDIKTGKCLKVLPAHSDPVTAIDFNRDGTMIVTS-SYD--GLYRILDAST-  173 (262)
Q Consensus       102 ~v~~~~~~~~~~~-l~~~~~---dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~~d--g~i~~~d~~~-  173 (262)
                      ......|+|+|+. ++..+.   +..|.++|+.+++..... ...+......|+|||+.++.. +.+  ..|.++|+.. 
T Consensus       189 ~~~~p~wSpDG~~~i~y~s~~~~~~~Iyv~dl~tg~~~~lt-~~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~dl~~g  267 (419)
T PRK04043        189 LNIFPKWANKEQTAFYYTSYGERKPTLYKYNLYTGKKEKIA-SSQGMLVVSDVSKDGSKLLLTMAPKGQPDIYLYDTNTK  267 (419)
T ss_pred             CeEeEEECCCCCcEEEEEEccCCCCEEEEEECCCCcEEEEe-cCCCcEEeeEECCCCCEEEEEEccCCCcEEEEEECCCC
Confidence            6778999999984 554333   357999999888754443 345556778899999866543 333  4677778654 


Q ss_pred             ------------------CCccEEEEEcC-CC--eEEEEecCCCceeeEEeccCCceeEEEEEEecCCCeeEEccccceE
Q 042146          174 ------------------PNGKFILVGTL-DN--TLRLWNYSTRKILKTYSGYTNSKYCISSTFSVTNGKYIVSHRDPVI  232 (262)
Q Consensus       174 ------------------~~~~~l~~~~~-dg--~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~  232 (262)
                                        |+|+.|+..+. .+  .|++.|+.+++..+...                       ...  .
T Consensus       268 ~~~~LT~~~~~d~~p~~SPDG~~I~F~Sdr~g~~~Iy~~dl~~g~~~rlt~-----------------------~g~--~  322 (419)
T PRK04043        268 TLTQITNYPGIDVNGNFVEDDKRIVFVSDRLGYPNIFMKKLNSGSVEQVVF-----------------------HGK--N  322 (419)
T ss_pred             cEEEcccCCCccCccEECCCCCEEEEEECCCCCceEEEEECCCCCeEeCcc-----------------------CCC--c
Confidence                              67765555542 22  56667776665533221                       111  1


Q ss_pred             EEEEcCCCCeEEEee
Q 042146          233 SVASHPAKNIIASGA  247 (262)
Q Consensus       233 ~~~~~p~~~~l~~~~  247 (262)
                      ...|+|+|+.|+..+
T Consensus       323 ~~~~SPDG~~Ia~~~  337 (419)
T PRK04043        323 NSSVSTYKNYIVYSS  337 (419)
T ss_pred             CceECCCCCEEEEEE
Confidence            237999999887776

>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function

Probab=98.56  E-value=0.00015  Score=55.08  Aligned_cols=177  Identities=15%  Similarity=0.197  Sum_probs=109.5

Q ss_pred             EEEEcc-CCCeEEEecCCC-eEEEeecCCCCCCCCCCCCCCccccCCccc--------------cccceeEEEEecC-CC
Q 042146           28 YVKFSH-DGRLLTSSSAEK-TLLTYSLSSISNFDSTPPSPLQKFTGHEQG--------------ISDLATIRLWDVP-TA   90 (262)
Q Consensus        28 ~~~~~~-~~~~l~s~~~d~-~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~--------------v~~~~~i~v~d~~-~~   90 (262)
                      .++.+| ....++.+-.-| ...+||..+...........-.-|.+|...              -..-+.|-|||.. +.
T Consensus         9 ~~a~~p~~~~avafaRRPG~~~~v~D~~~g~~~~~~~a~~gRHFyGHg~fs~dG~~LytTEnd~~~g~G~IgVyd~~~~~   88 (305)
T PF07433_consen    9 GVAAHPTRPEAVAFARRPGTFALVFDCRTGQLLQRLWAPPGRHFYGHGVFSPDGRLLYTTENDYETGRGVIGVYDAARGY   88 (305)
T ss_pred             ceeeCCCCCeEEEEEeCCCcEEEEEEcCCCceeeEEcCCCCCEEecCEEEcCCCCEEEEeccccCCCcEEEEEEECcCCc
Confidence            456666 344455555444 355666665544333333333334333211              1222389999998 56


Q ss_pred             ccceecccCCcceEEEEEeCCCCEEEeecC------------------CCeEEEEECCCCeeeee--e--ecCCCCeeeE
Q 042146           91 TSLKTLIGHTNYVFCINFNPQSNRIVSDTF------------------NETIRIWDIKTGKCLKV--L--PAHSDPVTAI  148 (262)
Q Consensus        91 ~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~------------------dg~i~vwd~~~~~~~~~--~--~~~~~~v~~~  148 (262)
                      +.+.++..|.-.-..+.+.||++.|+++-.                  +-.+...|.++++.+..  +  ..|...|..+
T Consensus        89 ~ri~E~~s~GIGPHel~l~pDG~tLvVANGGI~Thpd~GR~kLNl~tM~psL~~ld~~sG~ll~q~~Lp~~~~~lSiRHL  168 (305)
T PF07433_consen   89 RRIGEFPSHGIGPHELLLMPDGETLVVANGGIETHPDSGRAKLNLDTMQPSLVYLDARSGALLEQVELPPDLHQLSIRHL  168 (305)
T ss_pred             EEEeEecCCCcChhhEEEcCCCCEEEEEcCCCccCcccCceecChhhcCCceEEEecCCCceeeeeecCccccccceeeE
Confidence            677788877767778889999977766431                  23466667778877666  3  2367789999


Q ss_pred             EEccCCCEEEEEeCCCe-------EEEEeCCC-------------------------CCccEEE-EEcCCCeEEEEecCC
Q 042146          149 DFNRDGTMIVTSSYDGL-------YRILDAST-------------------------PNGKFIL-VGTLDNTLRLWNYST  195 (262)
Q Consensus       149 ~~~~~~~~l~~~~~dg~-------i~~~d~~~-------------------------~~~~~l~-~~~~dg~i~i~d~~~  195 (262)
                      ++.++|..++..-..|.       +.+++...                         .++.+++ ++-.-+.+.+||..+
T Consensus       169 a~~~~G~V~~a~Q~qg~~~~~~PLva~~~~g~~~~~~~~p~~~~~~l~~Y~gSIa~~~~g~~ia~tsPrGg~~~~~d~~t  248 (305)
T PF07433_consen  169 AVDGDGTVAFAMQYQGDPGDAPPLVALHRRGGALRLLPAPEEQWRRLNGYIGSIAADRDGRLIAVTSPRGGRVAVWDAAT  248 (305)
T ss_pred             EecCCCcEEEEEecCCCCCccCCeEEEEcCCCcceeccCChHHHHhhCCceEEEEEeCCCCEEEEECCCCCEEEEEECCC
Confidence            99998876665543332       33333222                         4565554 444667899999999


Q ss_pred             CceeeEEec
Q 042146          196 RKILKTYSG  204 (262)
Q Consensus       196 ~~~~~~~~~  204 (262)
                      ++.+....-
T Consensus       249 g~~~~~~~l  257 (305)
T PF07433_consen  249 GRLLGSVPL  257 (305)
T ss_pred             CCEeecccc
Confidence            998877653

>KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]

Probab=98.56  E-value=4.7e-08  Score=78.93  Aligned_cols=185  Identities=16%  Similarity=0.268  Sum_probs=121.4

Q ss_pred             cCceEEEEEccC--CCeEEEecCCCeEEEeecCCCCCCCCCCCCCCccccCCccccccceeEEEEecCCCccceecccCC
Q 042146           23 LRAVSYVKFSHD--GRLLTSSSAEKTLLTYSLSSISNFDSTPPSPLQKFTGHEQGISDLATIRLWDVPTATSLKTLIGHT  100 (262)
Q Consensus        23 ~~~v~~~~~~~~--~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~i~v~d~~~~~~~~~~~~~~  100 (262)
                      ...+.|++++-+  ...+++|..+|.|-+-.+....                                 .......+++.
T Consensus        56 tqy~kcva~~y~~d~cIlavG~atG~I~l~s~r~~h---------------------------------dSs~E~tp~~a  102 (783)
T KOG1008|consen   56 TQYVKCVASFYGNDRCILAVGSATGNISLLSVRHPH---------------------------------DSSAEVTPGYA  102 (783)
T ss_pred             CCCceeehhhcCCchhhhhhccccCceEEeecCCcc---------------------------------cccceeccccc
Confidence            445677776543  3467778888887776543210                                 01112345677


Q ss_pred             cceEEEEEeC-CCCEEEeec----CCCeEEEEECCCC--eee--eeeec-CCCCeeeEEEccCCCEEEEEeCCCeEEEEe
Q 042146          101 NYVFCINFNP-QSNRIVSDT----FNETIRIWDIKTG--KCL--KVLPA-HSDPVTAIDFNRDGTMIVTSSYDGLYRILD  170 (262)
Q Consensus       101 ~~v~~~~~~~-~~~~l~~~~----~dg~i~vwd~~~~--~~~--~~~~~-~~~~v~~~~~~~~~~~l~~~~~dg~i~~~d  170 (262)
                      .+.++++|++ |.+.||+|-    .|..+.|||+.++  .+.  ..+.. ......+++|..+.+++.+|...+.+.++|
T Consensus       103 r~Ct~lAwneLDtn~LAagldkhrnds~~~Iwdi~s~ltvPke~~~fs~~~l~gqns~cwlrd~klvlaGm~sr~~~ifd  182 (783)
T KOG1008|consen  103 RPCTSLAWNELDTNHLAAGLDKHRNDSSLKIWDINSLLTVPKESPLFSSSTLDGQNSVCWLRDTKLVLAGMTSRSVHIFD  182 (783)
T ss_pred             ccccccccccccHHHHHhhhhhhcccCCccceecccccCCCccccccccccccCccccccccCcchhhcccccchhhhhh
Confidence            8899999998 667777764    3567999999876  221  12222 234567889988889999999999999999


Q ss_pred             CCC-------------------C-CccEEEEEcCCCeEEEEe-cCCC-ceeeEEeccCCceeEEEEEEecCCCeeEEccc
Q 042146          171 AST-------------------P-NGKFILVGTLDNTLRLWN-YSTR-KILKTYSGYTNSKYCISSTFSVTNGKYIVSHR  228 (262)
Q Consensus       171 ~~~-------------------~-~~~~l~~~~~dg~i~i~d-~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  228 (262)
                      +|.                   | .++|+++-. ||.|.+|| .++- .++..+....+.                  ..
T Consensus       183 lRqs~~~~~svnTk~vqG~tVdp~~~nY~cs~~-dg~iAiwD~~rnienpl~~i~~~~N~------------------~~  243 (783)
T KOG1008|consen  183 LRQSLDSVSSVNTKYVQGITVDPFSPNYFCSNS-DGDIAIWDTYRNIENPLQIILRNENK------------------KP  243 (783)
T ss_pred             hhhhhhhhhhhhhhhcccceecCCCCCceeccc-cCceeeccchhhhccHHHHHhhCCCC------------------cc
Confidence            994                   4 567777665 99999999 3332 222222211111                  23


Q ss_pred             cceEEEEEcCCCC-eEEEeeecCCCcEEEEeec
Q 042146          229 DPVISVASHPAKN-IIASGALDNDRTMKIWTQE  260 (262)
Q Consensus       229 ~~v~~~~~~p~~~-~l~~~~~d~d~~i~iw~~~  260 (262)
                      +.+..++|+|... .+++... ..++|+++++.
T Consensus       244 ~~l~~~aycPtrtglla~l~R-dS~tIrlydi~  275 (783)
T KOG1008|consen  244 KQLFALAYCPTRTGLLAVLSR-DSITIRLYDIC  275 (783)
T ss_pred             cceeeEEeccCCcchhhhhcc-CcceEEEeccc
Confidence            3588999999754 4555554 36789998874

>KOG2041 consensus WD40 repeat protein [General function prediction only]

Probab=98.55  E-value=6.9e-07  Score=73.47  Aligned_cols=137  Identities=14%  Similarity=0.189  Sum_probs=100.0

Q ss_pred             CCcceEEEEEeCCCCEEEeecCCCeEEEEECCCCe---------------eeeeeecCCCCeeeEEEccCCCEEEEEeCC
Q 042146           99 HTNYVFCINFNPQSNRIVSDTFNETIRIWDIKTGK---------------CLKVLPAHSDPVTAIDFNRDGTMIVTSSYD  163 (262)
Q Consensus        99 ~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~---------------~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d  163 (262)
                      ......|++|+....++++|+.||.+++..+.+..               .-+++.+|+..|.-+.|..+.+.|-++..+
T Consensus        13 nnvkL~c~~WNke~gyIAcgG~dGlLKVlKl~t~t~d~~~~glaa~snLsmNQtLeGH~~sV~vvTWNe~~QKLTtSDt~   92 (1189)
T KOG2041|consen   13 NNVKLHCAEWNKESGYIACGGADGLLKVLKLGTDTTDLNKSGLAAASNLSMNQTLEGHNASVMVVTWNENNQKLTTSDTS   92 (1189)
T ss_pred             CCceEEEEEEcccCCeEEeccccceeEEEEccccCCcccccccccccccchhhhhccCcceEEEEEeccccccccccCCC
Confidence            34568899999999999999999999999876431               224567899999999999999999999999


Q ss_pred             CeEEEEeCCC----------------------CCccEEEEEcCCCeEEEEecCCCcee-eEEeccCCceeEEEEEEecCC
Q 042146          164 GLYRILDAST----------------------PNGKFILVGTLDNTLRLWNYSTRKIL-KTYSGYTNSKYCISSTFSVTN  220 (262)
Q Consensus       164 g~i~~~d~~~----------------------~~~~~l~~~~~dg~i~i~d~~~~~~~-~~~~~~~~~~~~~~~~~~~~~  220 (262)
                      |.|.+|-+-.                      .+|..++..-.||.|.+=.+...+.- +.+                  
T Consensus        93 GlIiVWmlykgsW~EEMiNnRnKSvV~SmsWn~dG~kIcIvYeDGavIVGsvdGNRIwgKeL------------------  154 (1189)
T KOG2041|consen   93 GLIIVWMLYKGSWCEEMINNRNKSVVVSMSWNLDGTKICIVYEDGAVIVGSVDGNRIWGKEL------------------  154 (1189)
T ss_pred             ceEEEEeeecccHHHHHhhCcCccEEEEEEEcCCCcEEEEEEccCCEEEEeeccceecchhc------------------
Confidence            9999998765                      45555555555665554433321110 111                  


Q ss_pred             CeeEEccccceEEEEEcCCCCeEEEeeecCCCcEEEEeecc
Q 042146          221 GKYIVSHRDPVISVASHPAKNIIASGALDNDRTMKIWTQEK  261 (262)
Q Consensus       221 ~~~~~~~~~~v~~~~~~p~~~~l~~~~~d~d~~i~iw~~~~  261 (262)
                            .......+.|+||.+.+..+-  .+|.+.++|.+.
T Consensus       155 ------kg~~l~hv~ws~D~~~~Lf~~--ange~hlydnqg  187 (1189)
T KOG2041|consen  155 ------KGQLLAHVLWSEDLEQALFKK--ANGETHLYDNQG  187 (1189)
T ss_pred             ------chheccceeecccHHHHHhhh--cCCcEEEecccc
Confidence                  112344788999988887776  788899888653

>PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals

Probab=98.54  E-value=3.9e-05  Score=61.26  Aligned_cols=139  Identities=15%  Similarity=0.220  Sum_probs=83.1

Q ss_pred             ceEEEEEccCCCeEEEecCCCeEEEeecCCCCCCC-CCCCCCC----cc--ccCCccccccceeEEEEecCC---C----
Q 042146           25 AVSYVKFSHDGRLLTSSSAEKTLLTYSLSSISNFD-STPPSPL----QK--FTGHEQGISDLATIRLWDVPT---A----   90 (262)
Q Consensus        25 ~v~~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~-~~~~~~~----~~--~~~~~~~v~~~~~i~v~d~~~---~----   90 (262)
                      .|+.+.|.++..-|++|...|.|.||.....+... ...+...    ..  ......        .+-|+..   .    
T Consensus         3 ~v~~vs~a~~t~Elav~~~~GeVv~~k~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~--------~l~di~~r~~~~~~~   74 (395)
T PF08596_consen    3 SVTHVSFAPETLELAVGLESGEVVLFKFGKNQNYGNREQPPDLDYNFRRFSLNNSPG--------KLTDISDRAPPSLKE   74 (395)
T ss_dssp             -EEEEEEETTTTEEEEEETTS-EEEEEEEE------------------S--GGGSS---------SEEE-GGG--TT-SE
T ss_pred             eEEEEEecCCCceEEEEccCCcEEEEEcccCCCCCccCCCcccCcccccccccCCCc--------ceEEehhhCCccccc
Confidence            58899999998899999999999999876644332 1111100    01  111111        1223221   1    


Q ss_pred             --ccceecccCCcceEEEEEeCCCCEEEeecCCCeEEEEECCCCeeeeee--ec------CCCCeeeEEEcc-----CC-
Q 042146           91 --TSLKTLIGHTNYVFCINFNPQSNRIVSDTFNETIRIWDIKTGKCLKVL--PA------HSDPVTAIDFNR-----DG-  154 (262)
Q Consensus        91 --~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~--~~------~~~~v~~~~~~~-----~~-  154 (262)
                        .+...+....++|++++.+ +=.+++.|+.+|.+.|.|+|....+..-  ..      ....++++.|..     |+ 
T Consensus        75 gf~P~~l~~~~~g~vtal~~S-~iGFvaigy~~G~l~viD~RGPavI~~~~i~~~~~~~~~~~~vt~ieF~vm~~~~D~y  153 (395)
T PF08596_consen   75 GFLPLTLLDAKQGPVTALKNS-DIGFVAIGYESGSLVVIDLRGPAVIYNENIRESFLSKSSSSYVTSIEFSVMTLGGDGY  153 (395)
T ss_dssp             EEEEEEEE---S-SEEEEEE--BTSEEEEEETTSEEEEEETTTTEEEEEEEGGG--T-SS----EEEEEEEEEE-TTSSS
T ss_pred             ccCchhheeccCCcEeEEecC-CCcEEEEEecCCcEEEEECCCCeEEeeccccccccccccccCeeEEEEEEEecCCCcc
Confidence              1222334457899999997 6668999999999999999877766542  11      234688888863     33 


Q ss_pred             --CEEEEEeCCCeEEEEeCC
Q 042146          155 --TMIVTSSYDGLYRILDAS  172 (262)
Q Consensus       155 --~~l~~~~~dg~i~~~d~~  172 (262)
                        -.|++|...|.+.+|.+.
T Consensus       154 SSi~L~vGTn~G~v~~fkIl  173 (395)
T PF08596_consen  154 SSICLLVGTNSGNVLTFKIL  173 (395)
T ss_dssp             EEEEEEEEETTSEEEEEEEE
T ss_pred             cceEEEEEeCCCCEEEEEEe
Confidence              378899999999999876

The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A.

>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.53  E-value=2.9e-05  Score=64.92  Aligned_cols=120  Identities=18%  Similarity=0.350  Sum_probs=83.2

Q ss_pred             CCCeEEEecCCCeEEEeecCCCCCCCCCCCCCCccccCCccccccceeEEEEecCCCccceecccCCcceEEEEEeCC--
Q 042146           34 DGRLLTSSSAEKTLLTYSLSSISNFDSTPPSPLQKFTGHEQGISDLATIRLWDVPTATSLKTLIGHTNYVFCINFNPQ--  111 (262)
Q Consensus        34 ~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~--  111 (262)
                      +|.+++|+|.||+|.|-.+.+                                   .+...++ ..+.++.+++++|+  
T Consensus        82 ~Gey~asCS~DGkv~I~sl~~-----------------------------------~~~~~~~-df~rpiksial~Pd~~  125 (846)
T KOG2066|consen   82 EGEYVASCSDDGKVVIGSLFT-----------------------------------DDEITQY-DFKRPIKSIALHPDFS  125 (846)
T ss_pred             CCceEEEecCCCcEEEeeccC-----------------------------------CccceeE-ecCCcceeEEeccchh
Confidence            499999999999998875432                                   2222222 23567889999997  


Q ss_pred             ---CCEEEeecCCCeEEEEECCC--CeeeeeeecCCCCeeeEEEccCCCEEEEEeCCCeEEEEeCCC-------------
Q 042146          112 ---SNRIVSDTFNETIRIWDIKT--GKCLKVLPAHSDPVTAIDFNRDGTMIVTSSYDGLYRILDAST-------------  173 (262)
Q Consensus       112 ---~~~l~~~~~dg~i~vwd~~~--~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~d~~~-------------  173 (262)
                         .+.+++|+..| +.++.-+-  .+....+....++|.++.|.  |++++-++.+| |++||+..             
T Consensus       126 ~~~sk~fv~GG~ag-lvL~er~wlgnk~~v~l~~~eG~I~~i~W~--g~lIAWand~G-v~vyd~~~~~~l~~i~~p~~~  201 (846)
T KOG2066|consen  126 RQQSKQFVSGGMAG-LVLSERNWLGNKDSVVLSEGEGPIHSIKWR--GNLIAWANDDG-VKVYDTPTRQRLTNIPPPSQS  201 (846)
T ss_pred             hhhhhheeecCcce-EEEehhhhhcCccceeeecCccceEEEEec--CcEEEEecCCC-cEEEeccccceeeccCCCCCC
Confidence               56799999888 77775321  11111344557899999997  77888888766 79999776             


Q ss_pred             ------------CCccEEEEEcCCCeEEEEecC
Q 042146          174 ------------PNGKFILVGTLDNTLRLWNYS  194 (262)
Q Consensus       174 ------------~~~~~l~~~~~dg~i~i~d~~  194 (262)
                                  .+...|+.| +..+|+|..++
T Consensus       202 ~R~e~fpphl~W~~~~~LVIG-W~d~v~i~~I~  233 (846)
T KOG2066|consen  202 VRPELFPPHLHWQDEDRLVIG-WGDSVKICSIK  233 (846)
T ss_pred             CCcccCCCceEecCCCeEEEe-cCCeEEEEEEe
Confidence                        244555554 44568888777

>PRK11138 outer membrane biogenesis protein BamB; Provisional

Probab=98.48  E-value=8.2e-05  Score=60.10  Aligned_cols=118  Identities=15%  Similarity=0.161  Sum_probs=78.7

Q ss_pred             CCEEEeecCCCeEEEEECCCCeeeeeeecCCCCeeeEEEccCCCEEEEEeCCCeEEEEeCCC------------------
Q 042146          112 SNRIVSDTFNETIRIWDIKTGKCLKVLPAHSDPVTAIDFNRDGTMIVTSSYDGLYRILDAST------------------  173 (262)
Q Consensus       112 ~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~d~~~------------------  173 (262)
                      +..++.++.+|.+..+|+.+++.+......  ....+.  ..+..++.++.+|.+..+|..+                  
T Consensus       256 ~~~vy~~~~~g~l~ald~~tG~~~W~~~~~--~~~~~~--~~~~~vy~~~~~g~l~ald~~tG~~~W~~~~~~~~~~~sp  331 (394)
T PRK11138        256 GGVVYALAYNGNLVALDLRSGQIVWKREYG--SVNDFA--VDGGRIYLVDQNDRVYALDTRGGVELWSQSDLLHRLLTAP  331 (394)
T ss_pred             CCEEEEEEcCCeEEEEECCCCCEEEeecCC--CccCcE--EECCEEEEEcCCCeEEEEECCCCcEEEcccccCCCcccCC
Confidence            556777778899999999999887765321  111222  2355677777778777777654                  


Q ss_pred             -CCccEEEEEcCCCeEEEEecCCCceeeEEeccCCceeEEEEEEecCCCeeEEccccceE-EEEEcCCCCeEEEeeecCC
Q 042146          174 -PNGKFILVGTLDNTLRLWNYSTRKILKTYSGYTNSKYCISSTFSVTNGKYIVSHRDPVI-SVASHPAKNIIASGALDND  251 (262)
Q Consensus       174 -~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~-~~~~~p~~~~l~~~~~d~d  251 (262)
                       ..+.+++.++.+|.++..|..+|+.+...+..                      ...+. ...+  .+..|+.++  .|
T Consensus       332 ~v~~g~l~v~~~~G~l~~ld~~tG~~~~~~~~~----------------------~~~~~s~P~~--~~~~l~v~t--~~  385 (394)
T PRK11138        332 VLYNGYLVVGDSEGYLHWINREDGRFVAQQKVD----------------------SSGFLSEPVV--ADDKLLIQA--RD  385 (394)
T ss_pred             EEECCEEEEEeCCCEEEEEECCCCCEEEEEEcC----------------------CCcceeCCEE--ECCEEEEEe--CC
Confidence             13567888899999999999999988776531                      11111 1112  244677777  88


Q ss_pred             CcEEEEee
Q 042146          252 RTMKIWTQ  259 (262)
Q Consensus       252 ~~i~iw~~  259 (262)
                      |.|..++.
T Consensus       386 G~l~~~~~  393 (394)
T PRK11138        386 GTVYAITR  393 (394)
T ss_pred             ceEEEEeC
Confidence            99988765

>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]

Probab=98.48  E-value=4.6e-05  Score=66.54  Aligned_cols=181  Identities=15%  Similarity=0.174  Sum_probs=112.4

Q ss_pred             CceEEEEEccCCCeEEEecCCCeEEEeecCCCCCCCCCCCCCCccccCCccccccceeEEEEecCCCccceecccCCcce
Q 042146           24 RAVSYVKFSHDGRLLTSSSAEKTLLTYSLSSISNFDSTPPSPLQKFTGHEQGISDLATIRLWDVPTATSLKTLIGHTNYV  103 (262)
Q Consensus        24 ~~v~~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~i~v~d~~~~~~~~~~~~~~~~v  103 (262)
                      ..|.++.|..+++-++.+..+|.|.+-|.+.                                   .. +.....-...|
T Consensus        69 ~~i~s~~fl~d~~~i~v~~~~G~iilvd~et-----------------------------------~~-~eivg~vd~GI  112 (1265)
T KOG1920|consen   69 DEIVSVQFLADTNSICVITALGDIILVDPET-----------------------------------LE-LEIVGNVDNGI  112 (1265)
T ss_pred             cceEEEEEecccceEEEEecCCcEEEEcccc-----------------------------------cc-eeeeeeccCce
Confidence            5788888888888888888888877764432                                   11 11112234679


Q ss_pred             EEEEEeCCCCEEEeecCCCeEEEEEC----CCC-------------------eeeeeeecC-------------------
Q 042146          104 FCINFNPQSNRIVSDTFNETIRIWDI----KTG-------------------KCLKVLPAH-------------------  141 (262)
Q Consensus       104 ~~~~~~~~~~~l~~~~~dg~i~vwd~----~~~-------------------~~~~~~~~~-------------------  141 (262)
                      .+++|+||+..++..+..+++.+-+-    -..                   +....+.+.                   
T Consensus       113 ~aaswS~Dee~l~liT~~~tll~mT~~f~~i~E~~L~~d~~~~sk~v~VGwGrkeTqfrgs~gr~~~~~~~~~ek~~~~~  192 (1265)
T KOG1920|consen  113 SAASWSPDEELLALITGRQTLLFMTKDFEPIAEKPLDADDERKSKFVNVGWGRKETQFRGSEGRQAARQKIEKEKALEQI  192 (1265)
T ss_pred             EEEeecCCCcEEEEEeCCcEEEEEeccccchhccccccccccccccceecccccceeeecchhhhcccccccccccccch
Confidence            99999999999998888888776532    111                   111122110                   


Q ss_pred             --CCCeeeEEEccCCCEEEEEe----CC-CeEEEEeCCC-------------------CCccEEEEEc---CCCeEEEEe
Q 042146          142 --SDPVTAIDFNRDGTMIVTSS----YD-GLYRILDAST-------------------PNGKFILVGT---LDNTLRLWN  192 (262)
Q Consensus       142 --~~~v~~~~~~~~~~~l~~~~----~d-g~i~~~d~~~-------------------~~~~~l~~~~---~dg~i~i~d  192 (262)
                        .+.=+.+.|--||.++++..    .+ +.|++||...                   |.|..+++-.   .|+.|.+|.
T Consensus       193 ~~~~~~~~IsWRgDg~~fAVs~~~~~~~~RkirV~drEg~Lns~se~~~~l~~~LsWkPsgs~iA~iq~~~sd~~IvffE  272 (1265)
T KOG1920|consen  193 EQDDHKTSISWRGDGEYFAVSFVESETGTRKIRVYDREGALNSTSEPVEGLQHSLSWKPSGSLIAAIQCKTSDSDIVFFE  272 (1265)
T ss_pred             hhccCCceEEEccCCcEEEEEEEeccCCceeEEEecccchhhcccCcccccccceeecCCCCeEeeeeecCCCCcEEEEe
Confidence              01124588988999988843    23 7899999763                   6666666542   344566665


Q ss_pred             cCCCceeeEEeccCCceeEEEEEEecCCCeeEEccccceEEEEEcCCCCeEEE---eeecCCCcEEEEeecc
Q 042146          193 YSTRKILKTYSGYTNSKYCISSTFSVTNGKYIVSHRDPVISVASHPAKNIIAS---GALDNDRTMKIWTQEK  261 (262)
Q Consensus       193 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~---~~~d~d~~i~iw~~~~  261 (262)
                      .. |-.-..|.-..+.                  ...+|..++|+.++..||+   ..  +...|++|-+.+
T Consensus       273 rN-GL~hg~f~l~~p~------------------de~~ve~L~Wns~sdiLAv~~~~~--e~~~v~lwt~~N  323 (1265)
T KOG1920|consen  273 RN-GLRHGEFVLPFPL------------------DEKEVEELAWNSNSDILAVVTSNL--ENSLVQLWTTGN  323 (1265)
T ss_pred             cC-CccccccccCCcc------------------cccchheeeecCCCCceeeeeccc--ccceEEEEEecC
Confidence            32 2222222110000                  3345899999999999998   44  455699998754

>KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair]

Probab=98.45  E-value=1.1e-06  Score=74.05  Aligned_cols=136  Identities=13%  Similarity=0.253  Sum_probs=96.7

Q ss_pred             eeecccccceecccCcCceEEEEEccCCCeEEEecCCCeEEEeecCCCCCCCCCCCCCCccccCCccccccceeEEEEec
Q 042146            8 ESFRPYTLTQTLNGHLRAVSYVKFSHDGRLLTSSSAEKTLLTYSLSSISNFDSTPPSPLQKFTGHEQGISDLATIRLWDV   87 (262)
Q Consensus         8 ~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~i~v~d~   87 (262)
                      ++..+++.++++.+|++.|.++..  .|+.|+++|..+...-..++                          .-|+|||+
T Consensus       202 rD~~s~~~iht~~aHs~siSDfDv--~GNlLitCG~S~R~~~l~~D--------------------------~FvkVYDL  253 (1118)
T KOG1275|consen  202 RDPNSFETIHTFDAHSGSISDFDV--QGNLLITCGYSMRRYNLAMD--------------------------PFVKVYDL  253 (1118)
T ss_pred             ecCCcCceeeeeeccccceeeeec--cCCeEEEeeccccccccccc--------------------------chhhhhhh
Confidence            334567788899999998866554  67888888876543322221                          14889999


Q ss_pred             CCCccceecccCCcceEEEEEeC-CCCEEEeecCCCeEEEEECC---CC-eeeeeeecCCCCeeeEEEccCCCEEEEEeC
Q 042146           88 PTATSLKTLIGHTNYVFCINFNP-QSNRIVSDTFNETIRIWDIK---TG-KCLKVLPAHSDPVTAIDFNRDGTMIVTSSY  162 (262)
Q Consensus        88 ~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~dg~i~vwd~~---~~-~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~  162 (262)
                      +..+.+..+.-+.++ .-+.|+| -...+++++..|...+-|..   +. .-+..+..-...+..++++++++.|+.+..
T Consensus       254 Rmmral~PI~~~~~P-~flrf~Psl~t~~~V~S~sGq~q~vd~~~lsNP~~~~~~v~p~~s~i~~fDiSsn~~alafgd~  332 (1118)
T KOG1275|consen  254 RMMRALSPIQFPYGP-QFLRFHPSLTTRLAVTSQSGQFQFVDTATLSNPPAGVKMVNPNGSGISAFDISSNGDALAFGDH  332 (1118)
T ss_pred             hhhhccCCcccccCc-hhhhhcccccceEEEEecccceeeccccccCCCccceeEEccCCCcceeEEecCCCceEEEecc
Confidence            887777666555444 5678888 45678888889999998832   22 112233333456999999999999999999


Q ss_pred             CCeEEEEeCC
Q 042146          163 DGLYRILDAS  172 (262)
Q Consensus       163 dg~i~~~d~~  172 (262)
                      +|.|.+|--+
T Consensus       333 ~g~v~~wa~~  342 (1118)
T KOG1275|consen  333 EGHVNLWADR  342 (1118)
T ss_pred             cCcEeeecCC
Confidence            9999999743

>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []

Probab=98.40  E-value=0.00035  Score=52.08  Aligned_cols=188  Identities=11%  Similarity=0.156  Sum_probs=105.7

Q ss_pred             eecccCcCceEEEEEccCCC-eEEEecCCCeEEEeecCCCCCCCCCCCCCCccccCCccccccceeEEEEecCCCcccee
Q 042146           17 QTLNGHLRAVSYVKFSHDGR-LLTSSSAEKTLLTYSLSSISNFDSTPPSPLQKFTGHEQGISDLATIRLWDVPTATSLKT   95 (262)
Q Consensus        17 ~~~~~h~~~v~~~~~~~~~~-~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~i~v~d~~~~~~~~~   95 (262)
                      +.+.+-...+..++|+|+.+ ++++....+.|...+.                                    +++.+..
T Consensus        15 ~~l~g~~~e~SGLTy~pd~~tLfaV~d~~~~i~els~------------------------------------~G~vlr~   58 (248)
T PF06977_consen   15 KPLPGILDELSGLTYNPDTGTLFAVQDEPGEIYELSL------------------------------------DGKVLRR   58 (248)
T ss_dssp             EE-TT--S-EEEEEEETTTTEEEEEETTTTEEEEEET------------------------------------T--EEEE
T ss_pred             eECCCccCCccccEEcCCCCeEEEEECCCCEEEEEcC------------------------------------CCCEEEE
Confidence            45566667799999999755 6666677777655543                                    2444444


Q ss_pred             cccC-CcceEEEEEeCCCCEEEeecCCCeEEEEECCCC------eeeeee-----ecCCCCeeeEEEccCCCEEEEEeCC
Q 042146           96 LIGH-TNYVFCINFNPQSNRIVSDTFNETIRIWDIKTG------KCLKVL-----PAHSDPVTAIDFNRDGTMIVTSSYD  163 (262)
Q Consensus        96 ~~~~-~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~------~~~~~~-----~~~~~~v~~~~~~~~~~~l~~~~~d  163 (262)
                      +.-. .+....|++..++.++++--.++.+.++++...      .....+     ..++..+-.++|.|.++.|+.+-..
T Consensus        59 i~l~g~~D~EgI~y~g~~~~vl~~Er~~~L~~~~~~~~~~~~~~~~~~~~~l~~~~~~N~G~EGla~D~~~~~L~v~kE~  138 (248)
T PF06977_consen   59 IPLDGFGDYEGITYLGNGRYVLSEERDQRLYIFTIDDDTTSLDRADVQKISLGFPNKGNKGFEGLAYDPKTNRLFVAKER  138 (248)
T ss_dssp             EE-SS-SSEEEEEE-STTEEEEEETTTTEEEEEEE----TT--EEEEEEEE---S---SS--EEEEEETTTTEEEEEEES
T ss_pred             EeCCCCCCceeEEEECCCEEEEEEcCCCcEEEEEEeccccccchhhceEEecccccCCCcceEEEEEcCCCCEEEEEeCC
Confidence            3222 245778888877777777666889999988322      111112     1245678999999987777777666


Q ss_pred             CeEEEEeCCC--------------------------------CCccEEEEEcCCCeEEEEecCCCceeeEEeccCCceeE
Q 042146          164 GLYRILDAST--------------------------------PNGKFILVGTLDNTLRLWNYSTRKILKTYSGYTNSKYC  211 (262)
Q Consensus       164 g~i~~~d~~~--------------------------------~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~  211 (262)
                      .-..+|.+..                                ..+++++....+..|.++| ..|+++..+.-..... .
T Consensus       139 ~P~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~S~l~~~p~t~~lliLS~es~~l~~~d-~~G~~~~~~~L~~g~~-g  216 (248)
T PF06977_consen  139 KPKRLYEVNGFPGGFDLFVSDDQDLDDDKLFVRDLSGLSYDPRTGHLLILSDESRLLLELD-RQGRVVSSLSLDRGFH-G  216 (248)
T ss_dssp             SSEEEEEEESTT-SS--EEEE-HHHH-HT--SS---EEEEETTTTEEEEEETTTTEEEEE--TT--EEEEEE-STTGG-G
T ss_pred             CChhhEEEccccCccceeeccccccccccceeccccceEEcCCCCeEEEEECCCCeEEEEC-CCCCEEEEEEeCCccc-C
Confidence            5555554432                                4577888888889999999 5688776665321100 0


Q ss_pred             EEEEEecCCCeeEEccccceEEEEEcCCCCeEEEeeecCCCcEEEE
Q 042146          212 ISSTFSVTNGKYIVSHRDPVISVASHPAKNIIASGALDNDRTMKIW  257 (262)
Q Consensus       212 ~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~d~d~~i~iw  257 (262)
                      +            ...-.....|+|.|+|.+.+++   +-+..++|
T Consensus       217 l------------~~~~~QpEGIa~d~~G~LYIvs---EpNlfy~f  247 (248)
T PF06977_consen  217 L------------SKDIPQPEGIAFDPDGNLYIVS---EPNLFYRF  247 (248)
T ss_dssp             -------------SS---SEEEEEE-TT--EEEEE---TTTEEEEE
T ss_pred             c------------ccccCCccEEEECCCCCEEEEc---CCceEEEe
Confidence            0            0011346799999999766665   55655554

Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.

>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function

Probab=98.39  E-value=0.00038  Score=52.90  Aligned_cols=81  Identities=17%  Similarity=0.188  Sum_probs=61.2

Q ss_pred             eEEEEecCCCccceecccCCcce--EEEEEeCCCCEEEee-----cCCCeEEEEECC-CCeeeeeeecCCCCeeeEEEcc
Q 042146           81 TIRLWDVPTATSLKTLIGHTNYV--FCINFNPQSNRIVSD-----TFNETIRIWDIK-TGKCLKVLPAHSDPVTAIDFNR  152 (262)
Q Consensus        81 ~i~v~d~~~~~~~~~~~~~~~~v--~~~~~~~~~~~l~~~-----~~dg~i~vwd~~-~~~~~~~~~~~~~~v~~~~~~~  152 (262)
                      ...+||..+++....+....+.-  -.-.|+|||++|++.     ...|.|-|||.. +-+.+.++..|.-.-..+.+.|
T Consensus        29 ~~~v~D~~~g~~~~~~~a~~gRHFyGHg~fs~dG~~LytTEnd~~~g~G~IgVyd~~~~~~ri~E~~s~GIGPHel~l~p  108 (305)
T PF07433_consen   29 FALVFDCRTGQLLQRLWAPPGRHFYGHGVFSPDGRLLYTTENDYETGRGVIGVYDAARGYRRIGEFPSHGIGPHELLLMP  108 (305)
T ss_pred             EEEEEEcCCCceeeEEcCCCCCEEecCEEEcCCCCEEEEeccccCCCcEEEEEEECcCCcEEEeEecCCCcChhhEEEcC
Confidence            57889999988776654322211  135799999999975     345889999998 6677888887777778899999


Q ss_pred             CCCEEEEEe
Q 042146          153 DGTMIVTSS  161 (262)
Q Consensus       153 ~~~~l~~~~  161 (262)
                      ||+.|+++-
T Consensus       109 DG~tLvVAN  117 (305)
T PF07433_consen  109 DGETLVVAN  117 (305)
T ss_pred             CCCEEEEEc
Confidence            998777763

>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.37  E-value=4.4e-05  Score=64.35  Aligned_cols=169  Identities=15%  Similarity=0.225  Sum_probs=102.5

Q ss_pred             EEccCCCeEEEecCCCeEEEeecCCCCCCCCCCCCCCccccCCccccccceeEEEEecCCCccceecccCCcc-eEEEEE
Q 042146           30 KFSHDGRLLTSSSAEKTLLTYSLSSISNFDSTPPSPLQKFTGHEQGISDLATIRLWDVPTATSLKTLIGHTNY-VFCINF  108 (262)
Q Consensus        30 ~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~i~v~d~~~~~~~~~~~~~~~~-v~~~~~  108 (262)
                      .|++.+..++.|+.+|.|.+.+-                                    .-+.++.++.+... |..+..
T Consensus        30 c~~s~~~~vvigt~~G~V~~Ln~------------------------------------s~~~~~~fqa~~~siv~~L~~   73 (933)
T KOG2114|consen   30 CCSSSTGSVVIGTADGRVVILNS------------------------------------SFQLIRGFQAYEQSIVQFLYI   73 (933)
T ss_pred             EEcCCCceEEEeeccccEEEecc------------------------------------cceeeehheecchhhhhHhhc
Confidence            36788889999999999877742                                    11222444544444 444444


Q ss_pred             eCCCCEEEeecCCC-----eEEEEECCCC------eeee--eeec-----CCCCeeeEEEccCCCEEEEEeCCCeEEEEe
Q 042146          109 NPQSNRIVSDTFNE-----TIRIWDIKTG------KCLK--VLPA-----HSDPVTAIDFNRDGTMIVTSSYDGLYRILD  170 (262)
Q Consensus       109 ~~~~~~l~~~~~dg-----~i~vwd~~~~------~~~~--~~~~-----~~~~v~~~~~~~~~~~l~~~~~dg~i~~~d  170 (262)
                      ..+.++|++.+.|+     .|++|+++..      +++.  .+..     ...++.+++.+.+-+.++.|-.+|.|..+.
T Consensus        74 ~~~~~~L~sv~Ed~~~np~llkiw~lek~~~n~sP~c~~~~ri~~~~np~~~~p~s~l~Vs~~l~~Iv~Gf~nG~V~~~~  153 (933)
T KOG2114|consen   74 LNKQNFLFSVGEDEQGNPVLLKIWDLEKVDKNNSPQCLYEHRIFTIKNPTNPSPASSLAVSEDLKTIVCGFTNGLVICYK  153 (933)
T ss_pred             ccCceEEEEEeecCCCCceEEEEecccccCCCCCcceeeeeeeeccCCCCCCCcceEEEEEccccEEEEEecCcEEEEEc
Confidence            44456777766554     5999999643      2331  1112     245789999999988999999999999885


Q ss_pred             CCC------------------------CCccE-EEEEcCCCeEEEEecCCCce-eeEEeccCCceeEEEEEEecCCCeeE
Q 042146          171 AST------------------------PNGKF-ILVGTLDNTLRLWNYSTRKI-LKTYSGYTNSKYCISSTFSVTNGKYI  224 (262)
Q Consensus       171 ~~~------------------------~~~~~-l~~~~~dg~i~i~d~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~  224 (262)
                      -.-                        .++.. +.+++ ...|.+|.+....+ ...+..                    
T Consensus       154 GDi~RDrgsr~~~~~~~~~pITgL~~~~d~~s~lFv~T-t~~V~~y~l~gr~p~~~~ld~--------------------  212 (933)
T KOG2114|consen  154 GDILRDRGSRQDYSHRGKEPITGLALRSDGKSVLFVAT-TEQVMLYSLSGRTPSLKVLDN--------------------  212 (933)
T ss_pred             CcchhccccceeeeccCCCCceeeEEecCCceeEEEEe-cceeEEEEecCCCcceeeecc--------------------
Confidence            322                        22222 22222 23466666663221 222222                    


Q ss_pred             EccccceEEEEEcCCCCeEEEeeecCCCcEEEEeec
Q 042146          225 VSHRDPVISVASHPAKNIIASGALDNDRTMKIWTQE  260 (262)
Q Consensus       225 ~~~~~~v~~~~~~p~~~~l~~~~~d~d~~i~iw~~~  260 (262)
                        |...+.|.++++....+++++   +..+.+|+.+
T Consensus       213 --~G~~lnCss~~~~t~qfIca~---~e~l~fY~sd  243 (933)
T KOG2114|consen  213 --NGISLNCSSFSDGTYQFICAG---SEFLYFYDSD  243 (933)
T ss_pred             --CCccceeeecCCCCccEEEec---CceEEEEcCC
Confidence              666777888877666555554   3466766654

>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=98.34  E-value=7.2e-05  Score=60.62  Aligned_cols=127  Identities=10%  Similarity=0.105  Sum_probs=79.2

Q ss_pred             CCcceEEEEEeCCCCEEEeecCCCeEEEEECCCCeeeeeeecCCCCeeeEEEccCCCEEEEEeCCCeEEEEe-CCC----
Q 042146           99 HTNYVFCINFNPQSNRIVSDTFNETIRIWDIKTGKCLKVLPAHSDPVTAIDFNRDGTMIVTSSYDGLYRILD-AST----  173 (262)
Q Consensus        99 ~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~d-~~~----  173 (262)
                      .......+.++|+++.++++ .+|.-.+|.....+...     .+.-..++|.+. ..+++-...++|.++. +..    
T Consensus        31 ~~~~p~~ls~npngr~v~V~-g~geY~iyt~~~~r~k~-----~G~g~~~vw~~~-n~yAv~~~~~~I~I~kn~~~~~~k  103 (443)
T PF04053_consen   31 CEIYPQSLSHNPNGRFVLVC-GDGEYEIYTALAWRNKA-----FGSGLSFVWSSR-NRYAVLESSSTIKIYKNFKNEVVK  103 (443)
T ss_dssp             -SS--SEEEE-TTSSEEEEE-ETTEEEEEETTTTEEEE-----EEE-SEEEE-TS-SEEEEE-TTS-EEEEETTEE-TT-
T ss_pred             CCcCCeeEEECCCCCEEEEE-cCCEEEEEEccCCcccc-----cCceeEEEEecC-ccEEEEECCCeEEEEEcCccccce
Confidence            33457789999999999884 47888888744333322     233467889984 4577777788999963 222    


Q ss_pred             -----------CCccEEEEEcCCCeEEEEecCCCceeeEEeccCCceeEEEEEEecCCCeeEEccccceEEEEEcCCCCe
Q 042146          174 -----------PNGKFILVGTLDNTLRLWNYSTRKILKTYSGYTNSKYCISSTFSVTNGKYIVSHRDPVISVASHPAKNI  242 (262)
Q Consensus       174 -----------~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~  242 (262)
                                 -.|..|...+. +.|.+||..+++.++.+..                        .+|..+.|++++.+
T Consensus       104 ~i~~~~~~~~If~G~LL~~~~~-~~i~~yDw~~~~~i~~i~v------------------------~~vk~V~Ws~~g~~  158 (443)
T PF04053_consen  104 SIKLPFSVEKIFGGNLLGVKSS-DFICFYDWETGKLIRRIDV------------------------SAVKYVIWSDDGEL  158 (443)
T ss_dssp             ----SS-EEEEE-SSSEEEEET-TEEEEE-TTT--EEEEESS-------------------------E-EEEEE-TTSSE
T ss_pred             EEcCCcccceEEcCcEEEEECC-CCEEEEEhhHcceeeEEec------------------------CCCcEEEEECCCCE
Confidence                       12566666654 4899999999999999863                        24899999999999


Q ss_pred             EEEeeecCCCcEEEEeec
Q 042146          243 IASGALDNDRTMKIWTQE  260 (262)
Q Consensus       243 l~~~~~d~d~~i~iw~~~  260 (262)
                      ++..+   +..+.|.+.+
T Consensus       159 val~t---~~~i~il~~~  173 (443)
T PF04053_consen  159 VALVT---KDSIYILKYN  173 (443)
T ss_dssp             EEEE----S-SEEEEEE-
T ss_pred             EEEEe---CCeEEEEEec
Confidence            99987   4478887764

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.

>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats

Probab=98.34  E-value=2.9e-06  Score=68.41  Aligned_cols=74  Identities=12%  Similarity=0.131  Sum_probs=59.8

Q ss_pred             cCcCceEEEEEccCCCeEEEecCCCeEEEeecCCCCCCCCCCCCCCccccCCccccccceeEEEEecCCCccceecccCC
Q 042146           21 GHLRAVSYVKFSHDGRLLTSSSAEKTLLTYSLSSISNFDSTPPSPLQKFTGHEQGISDLATIRLWDVPTATSLKTLIGHT  100 (262)
Q Consensus        21 ~h~~~v~~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~i~v~d~~~~~~~~~~~~~~  100 (262)
                      ..+..|.|++++|+...|+.|+.||.|.+||...                                   +  +..+....
T Consensus       257 pL~s~v~~ca~sp~E~kLvlGC~DgSiiLyD~~~-----------------------------------~--~t~~~ka~  299 (545)
T PF11768_consen  257 PLPSQVICCARSPSEDKLVLGCEDGSIILYDTTR-----------------------------------G--VTLLAKAE  299 (545)
T ss_pred             ecCCcceEEecCcccceEEEEecCCeEEEEEcCC-----------------------------------C--eeeeeeec
Confidence            4678899999999999999999999999996532                                   1  11122233


Q ss_pred             cceEEEEEeCCCCEEEeecCCCeEEEEECCC
Q 042146          101 NYVFCINFNPQSNRIVSDTFNETIRIWDIKT  131 (262)
Q Consensus       101 ~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~  131 (262)
                      -..+.++|||+|..+++|+..|.+.+||+.-
T Consensus       300 ~~P~~iaWHp~gai~~V~s~qGelQ~FD~AL  330 (545)
T PF11768_consen  300 FIPTLIAWHPDGAIFVVGSEQGELQCFDMAL  330 (545)
T ss_pred             ccceEEEEcCCCcEEEEEcCCceEEEEEeec
Confidence            4578899999999999999999999999853

>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.32  E-value=0.0002  Score=60.54  Aligned_cols=179  Identities=13%  Similarity=0.221  Sum_probs=107.8

Q ss_pred             CCCCceeeec-ccccceecccCcCc-eEEEEEccCCCeEEEecCCC-----eEEEeecCCCCCCCCCCCCCCccccCCcc
Q 042146            2 SSDRSLESFR-PYTLTQTLNGHLRA-VSYVKFSHDGRLLTSSSAEK-----TLLTYSLSSISNFDSTPPSPLQKFTGHEQ   74 (262)
Q Consensus         2 s~d~~i~~~~-~~~~~~~~~~h~~~-v~~~~~~~~~~~l~s~~~d~-----~i~iw~~~~~~~~~~~~~~~~~~~~~~~~   74 (262)
                      +.||.+..+. .++..+.++++... |.-+....+.++|++.+.|+     .|++|+++....-..  +.          
T Consensus        42 t~~G~V~~Ln~s~~~~~~fqa~~~siv~~L~~~~~~~~L~sv~Ed~~~np~llkiw~lek~~~n~s--P~----------  109 (933)
T KOG2114|consen   42 TADGRVVILNSSFQLIRGFQAYEQSIVQFLYILNKQNFLFSVGEDEQGNPVLLKIWDLEKVDKNNS--PQ----------  109 (933)
T ss_pred             eccccEEEecccceeeehheecchhhhhHhhcccCceEEEEEeecCCCCceEEEEecccccCCCCC--cc----------
Confidence            3578888886 45666889999888 44443333346888877765     488888865321110  10          


Q ss_pred             ccccceeEEEEecCCCccceecccCCcceEEEEEeCCCCEEEeecCCCeEEEEECC----CCeeeeeeecCCCCeeeEEE
Q 042146           75 GISDLATIRLWDVPTATSLKTLIGHTNYVFCINFNPQSNRIVSDTFNETIRIWDIK----TGKCLKVLPAHSDPVTAIDF  150 (262)
Q Consensus        75 ~v~~~~~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~----~~~~~~~~~~~~~~v~~~~~  150 (262)
                         .+...+++-..       .+....++.+++++.+-+.+++|-.+|.|..+.-.    .+...........+|+.+.+
T Consensus       110 ---c~~~~ri~~~~-------np~~~~p~s~l~Vs~~l~~Iv~Gf~nG~V~~~~GDi~RDrgsr~~~~~~~~~pITgL~~  179 (933)
T KOG2114|consen  110 ---CLYEHRIFTIK-------NPTNPSPASSLAVSEDLKTIVCGFTNGLVICYKGDILRDRGSRQDYSHRGKEPITGLAL  179 (933)
T ss_pred             ---eeeeeeeeccC-------CCCCCCcceEEEEEccccEEEEEecCcEEEEEcCcchhccccceeeeccCCCCceeeEE
Confidence               00011222211       11245678999999999999999999999998531    11112222234679999999


Q ss_pred             ccCCCEEEEEeCCCeEEEEeCCC--------------------CCccE-EEEEcCCCeEEEEecCCCceeeEEe
Q 042146          151 NRDGTMIVTSSYDGLYRILDAST--------------------PNGKF-ILVGTLDNTLRLWNYSTRKILKTYS  203 (262)
Q Consensus       151 ~~~~~~l~~~~~dg~i~~~d~~~--------------------~~~~~-l~~~~~dg~i~i~d~~~~~~~~~~~  203 (262)
                      ..++..++.+..-..|.+|.+..                    .++.. +++++ +..+.+|+.....+...+.
T Consensus       180 ~~d~~s~lFv~Tt~~V~~y~l~gr~p~~~~ld~~G~~lnCss~~~~t~qfIca~-~e~l~fY~sd~~~~cfaf~  252 (933)
T KOG2114|consen  180 RSDGKSVLFVATTEQVMLYSLSGRTPSLKVLDNNGISLNCSSFSDGTYQFICAG-SEFLYFYDSDGRGPCFAFE  252 (933)
T ss_pred             ecCCceeEEEEecceeEEEEecCCCcceeeeccCCccceeeecCCCCccEEEec-CceEEEEcCCCcceeeeec
Confidence            98887633334445567776553                    12222 33333 3458888877666666665

>smart00320 WD40 WD40 repeats

Probab=98.32  E-value=1.8e-06  Score=43.87  Aligned_cols=38  Identities=39%  Similarity=0.597  Sum_probs=33.9

Q ss_pred             ccceecccCcCceEEEEEccCCCeEEEecCCCeEEEee
Q 042146           14 TLTQTLNGHLRAVSYVKFSHDGRLLTSSSAEKTLLTYS   51 (262)
Q Consensus        14 ~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~iw~   51 (262)
                      ++...+..|...|.++.|++++.++++++.|+.+++|+
T Consensus         3 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~   40 (40)
T smart00320        3 ELLKTLKGHTGPVTSVAFSPDGKYLASASDDGTIKLWD   40 (40)
T ss_pred             EEEEEEEecCCceeEEEECCCCCEEEEecCCCeEEEcC
Confidence            45567778999999999999999999999999999995

Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.

>PRK11138 outer membrane biogenesis protein BamB; Provisional

Probab=98.28  E-value=0.00032  Score=56.73  Aligned_cols=168  Identities=9%  Similarity=0.015  Sum_probs=98.4

Q ss_pred             CCeEEEecCCCeEEEeecCCCCCC-CCCCCCCCcc---ccCCcccc-ccceeEEEEecCCCccceecccCCcceE-EEEE
Q 042146           35 GRLLTSSSAEKTLLTYSLSSISNF-DSTPPSPLQK---FTGHEQGI-SDLATIRLWDVPTATSLKTLIGHTNYVF-CINF  108 (262)
Q Consensus        35 ~~~l~s~~~d~~i~iw~~~~~~~~-~~~~~~~~~~---~~~~~~~v-~~~~~i~v~d~~~~~~~~~~~~~~~~v~-~~~~  108 (262)
                      +..++.++.+|.+.-+|.++.+.. ..........   +....--+ ...+.+..+|.++++.+........... ...-
T Consensus       120 ~~~v~v~~~~g~l~ald~~tG~~~W~~~~~~~~~ssP~v~~~~v~v~~~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~~  199 (394)
T PRK11138        120 GGKVYIGSEKGQVYALNAEDGEVAWQTKVAGEALSRPVVSDGLVLVHTSNGMLQALNESDGAVKWTVNLDVPSLTLRGES  199 (394)
T ss_pred             CCEEEEEcCCCEEEEEECCCCCCcccccCCCceecCCEEECCEEEEECCCCEEEEEEccCCCEeeeecCCCCcccccCCC
Confidence            456777888999999998765432 1111111100   00000000 1123688889999988876653211100 0001


Q ss_pred             eC--CCCEEEeecCCCeEEEEECCCCeeeeeeecCCC-------CeeeEEEcc--CCCEEEEEeCCCeEEEEeCCC----
Q 042146          109 NP--QSNRIVSDTFNETIRIWDIKTGKCLKVLPAHSD-------PVTAIDFNR--DGTMIVTSSYDGLYRILDAST----  173 (262)
Q Consensus       109 ~~--~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~-------~v~~~~~~~--~~~~l~~~~~dg~i~~~d~~~----  173 (262)
                      +|  .+..++.++.+|.+..+|.++++.+........       ....+.-+|  .+..++.++.+|.+..+|..+    
T Consensus       200 sP~v~~~~v~~~~~~g~v~a~d~~~G~~~W~~~~~~~~~~~~~~~~~~~~~sP~v~~~~vy~~~~~g~l~ald~~tG~~~  279 (394)
T PRK11138        200 APATAFGGAIVGGDNGRVSAVLMEQGQLIWQQRISQPTGATEIDRLVDVDTTPVVVGGVVYALAYNGNLVALDLRSGQIV  279 (394)
T ss_pred             CCEEECCEEEEEcCCCEEEEEEccCChhhheeccccCCCccchhcccccCCCcEEECCEEEEEEcCCeEEEEECCCCCEE
Confidence            22  234567778899999999999987766532110       011122233  345677777888888888765    


Q ss_pred             ------------CCccEEEEEcCCCeEEEEecCCCceeeEE
Q 042146          174 ------------PNGKFILVGTLDNTLRLWNYSTRKILKTY  202 (262)
Q Consensus       174 ------------~~~~~l~~~~~dg~i~i~d~~~~~~~~~~  202 (262)
                                  ..+..++.++.+|.+..+|..+|+.+...
T Consensus       280 W~~~~~~~~~~~~~~~~vy~~~~~g~l~ald~~tG~~~W~~  320 (394)
T PRK11138        280 WKREYGSVNDFAVDGGRIYLVDQNDRVYALDTRGGVELWSQ  320 (394)
T ss_pred             EeecCCCccCcEEECCEEEEEcCCCeEEEEECCCCcEEEcc
Confidence                        23466777888999999999999876544

>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region

Probab=98.24  E-value=0.00031  Score=44.71  Aligned_cols=75  Identities=16%  Similarity=0.271  Sum_probs=55.1

Q ss_pred             eEEEEEeC-CC---CEEEeecCCCeEEEEECCCCeeeeeeecCCCCeeeEEEccCCCEEEEEeCCCeEEEEeCCCCCccE
Q 042146          103 VFCINFNP-QS---NRIVSDTFNETIRIWDIKTGKCLKVLPAHSDPVTAIDFNRDGTMIVTSSYDGLYRILDASTPNGKF  178 (262)
Q Consensus       103 v~~~~~~~-~~---~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~  178 (262)
                      |++|++.. ++   +.|++|+.|..|++|+  ....+.++.. .+.|++++-... ..|+.+..+|+|-+|+.       
T Consensus         2 V~al~~~d~d~dg~~eLlvGs~D~~IRvf~--~~e~~~Ei~e-~~~v~~L~~~~~-~~F~Y~l~NGTVGvY~~-------   70 (111)
T PF14783_consen    2 VTALCLFDFDGDGENELLVGSDDFEIRVFK--GDEIVAEITE-TDKVTSLCSLGG-GRFAYALANGTVGVYDR-------   70 (111)
T ss_pred             eeEEEEEecCCCCcceEEEecCCcEEEEEe--CCcEEEEEec-ccceEEEEEcCC-CEEEEEecCCEEEEEeC-------
Confidence            56777765 22   5799999999999997  3466777764 566788877655 56888888888888753       


Q ss_pred             EEEEcCCCeEEEEecCCC
Q 042146          179 ILVGTLDNTLRLWNYSTR  196 (262)
Q Consensus       179 l~~~~~dg~i~i~d~~~~  196 (262)
                              ..++|.+++.
T Consensus        71 --------~~RlWRiKSK   80 (111)
T PF14783_consen   71 --------SQRLWRIKSK   80 (111)
T ss_pred             --------cceeeeeccC
Confidence                    4678877643

>PRK02888 nitrous-oxide reductase; Validated

Probab=98.24  E-value=0.00029  Score=58.57  Aligned_cols=127  Identities=11%  Similarity=0.179  Sum_probs=85.7

Q ss_pred             EeCCCCEEEee-cCCCeEEEEECCCCeeeeeeecCCCCeeeEEEccCCCEEEEEeCCC---------------eEEEEeC
Q 042146          108 FNPQSNRIVSD-TFNETIRIWDIKTGKCLKVLPAHSDPVTAIDFNRDGTMIVTSSYDG---------------LYRILDA  171 (262)
Q Consensus       108 ~~~~~~~l~~~-~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg---------------~i~~~d~  171 (262)
                      +.|||+.+... -..+.+.+.|.++.+...++.-. +....++++|+|+++++.+.+.               .+..++.
T Consensus       200 lpnDGk~l~~~~ey~~~vSvID~etmeV~~qV~Vd-gnpd~v~~spdGk~afvTsyNsE~G~tl~em~a~e~d~~vvfni  278 (635)
T PRK02888        200 LPNDGKDLDDPKKYRSLFTAVDAETMEVAWQVMVD-GNLDNVDTDYDGKYAFSTCYNSEEGVTLAEMMAAERDWVVVFNI  278 (635)
T ss_pred             cCCCCCEeecccceeEEEEEEECccceEEEEEEeC-CCcccceECCCCCEEEEeccCcccCcceeeeccccCceEEEEch
Confidence            34466555332 23466888888887777776543 3447789999999988886321               2333333


Q ss_pred             CC-----CCccEEEEEcCCCeEEEEecCC-----CceeeEEeccCCceeEEEEEEecCCCeeEEccccceEEEEEcCCCC
Q 042146          172 ST-----PNGKFILVGTLDNTLRLWNYST-----RKILKTYSGYTNSKYCISSTFSVTNGKYIVSHRDPVISVASHPAKN  241 (262)
Q Consensus       172 ~~-----~~~~~l~~~~~dg~i~i~d~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~  241 (262)
                      ..     ++|++...+  ++.|.+.|.++     .+.+..++                       -......+.++|||+
T Consensus       279 ~~iea~vkdGK~~~V~--gn~V~VID~~t~~~~~~~v~~yIP-----------------------VGKsPHGV~vSPDGk  333 (635)
T PRK02888        279 ARIEEAVKAGKFKTIG--GSKVPVVDGRKAANAGSALTRYVP-----------------------VPKNPHGVNTSPDGK  333 (635)
T ss_pred             HHHHHhhhCCCEEEEC--CCEEEEEECCccccCCcceEEEEE-----------------------CCCCccceEECCCCC
Confidence            32     566666653  56788999887     34555554                       445677899999999


Q ss_pred             eEEEeeecCCCcEEEEeecc
Q 042146          242 IIASGALDNDRTMKIWTQEK  261 (262)
Q Consensus       242 ~l~~~~~d~d~~i~iw~~~~  261 (262)
                      ++++++. .+.+|.|.|+.+
T Consensus       334 ylyVank-lS~tVSVIDv~k  352 (635)
T PRK02888        334 YFIANGK-LSPTVTVIDVRK  352 (635)
T ss_pred             EEEEeCC-CCCcEEEEEChh
Confidence            9988875 488999999864

>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins

Probab=98.21  E-value=6.8e-05  Score=64.29  Aligned_cols=115  Identities=17%  Similarity=0.239  Sum_probs=84.9

Q ss_pred             cCCCeEEEEECCCCeeeeeeecCCCC-eeeEEEcc-----CCCEEEEEeCCCeEEEEeCCC-------------------
Q 042146          119 TFNETIRIWDIKTGKCLKVLPAHSDP-VTAIDFNR-----DGTMIVTSSYDGLYRILDAST-------------------  173 (262)
Q Consensus       119 ~~dg~i~vwd~~~~~~~~~~~~~~~~-v~~~~~~~-----~~~~l~~~~~dg~i~~~d~~~-------------------  173 (262)
                      .....|+-.|++.|+.+.++..|... |..++=..     +...-+.|-.+..+..||.|.                   
T Consensus       501 ~~~~~ly~mDLe~GKVV~eW~~~~~~~v~~~~p~~K~aqlt~e~tflGls~n~lfriDpR~~~~k~v~~~~k~Y~~~~~F  580 (794)
T PF08553_consen  501 NNPNKLYKMDLERGKVVEEWKVHDDIPVVDIAPDSKFAQLTNEQTFLGLSDNSLFRIDPRLSGNKLVDSQSKQYSSKNNF  580 (794)
T ss_pred             CCCCceEEEecCCCcEEEEeecCCCcceeEecccccccccCCCceEEEECCCceEEeccCCCCCceeeccccccccCCCc
Confidence            45678999999999999999887654 55443221     234567788888999999886                   


Q ss_pred             -----CCccEEEEEcCCCeEEEEecCCCcee-eEEeccCCceeEEEEEEecCCCeeEEccccceEEEEEcCCCCeEEEee
Q 042146          174 -----PNGKFILVGTLDNTLRLWNYSTRKIL-KTYSGYTNSKYCISSTFSVTNGKYIVSHRDPVISVASHPAKNIIASGA  247 (262)
Q Consensus       174 -----~~~~~l~~~~~dg~i~i~d~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~  247 (262)
                           ....+||+|+.+|.||+||-- |+.. ..+++                      -..+|..|..+.||++|++.+
T Consensus       581 s~~aTt~~G~iavgs~~G~IRLyd~~-g~~AKT~lp~----------------------lG~pI~~iDvt~DGkwilaTc  637 (794)
T PF08553_consen  581 SCFATTEDGYIAVGSNKGDIRLYDRL-GKRAKTALPG----------------------LGDPIIGIDVTADGKWILATC  637 (794)
T ss_pred             eEEEecCCceEEEEeCCCcEEeeccc-chhhhhcCCC----------------------CCCCeeEEEecCCCcEEEEee
Confidence                 345689999999999999943 3222 22222                      678999999999999988876


Q ss_pred             ecCCCcEEEEee
Q 042146          248 LDNDRTMKIWTQ  259 (262)
Q Consensus       248 ~d~d~~i~iw~~  259 (262)
                         +..|.+.+.
T Consensus       638 ---~tyLlLi~t  646 (794)
T PF08553_consen  638 ---KTYLLLIDT  646 (794)
T ss_pred             ---cceEEEEEE
Confidence               456777664

Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].

>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=98.20  E-value=0.00014  Score=59.07  Aligned_cols=212  Identities=14%  Similarity=0.125  Sum_probs=98.8

Q ss_pred             cCcCceEEEEEccCCCeEEEecCCCeEEEeecCCCCCCCCCCCCCCccccC-Cccccc-cceeEEEEecCCCccceeccc
Q 042146           21 GHLRAVSYVKFSHDGRLLTSSSAEKTLLTYSLSSISNFDSTPPSPLQKFTG-HEQGIS-DLATIRLWDVPTATSLKTLIG   98 (262)
Q Consensus        21 ~h~~~v~~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~-~~~~v~-~~~~i~v~d~~~~~~~~~~~~   98 (262)
                      ...-....+.++|+|+++++++ ||.-.|+................ .+.+ ..-.+. .-..|.++.--+.+....++.
T Consensus        30 ~~~~~p~~ls~npngr~v~V~g-~geY~iyt~~~~r~k~~G~g~~~-vw~~~n~yAv~~~~~~I~I~kn~~~~~~k~i~~  107 (443)
T PF04053_consen   30 SCEIYPQSLSHNPNGRFVLVCG-DGEYEIYTALAWRNKAFGSGLSF-VWSSRNRYAVLESSSTIKIYKNFKNEVVKSIKL  107 (443)
T ss_dssp             E-SS--SEEEE-TTSSEEEEEE-TTEEEEEETTTTEEEEEEE-SEE-EE-TSSEEEEE-TTS-EEEEETTEE-TT-----
T ss_pred             CCCcCCeeEEECCCCCEEEEEc-CCEEEEEEccCCcccccCceeEE-EEecCccEEEEECCCeEEEEEcCccccceEEcC
Confidence            3445578999999999988855 67777775322111110000000 0111 000000 011455542222222222221


Q ss_pred             CCcceEEEEEeCCCCEEEeecCCCeEEEEECCCCeeeeeeecCCCCeeeEEEccCCCEEEEEeCCCeEEEEeCCC-----
Q 042146           99 HTNYVFCINFNPQSNRIVSDTFNETIRIWDIKTGKCLKVLPAHSDPVTAIDFNRDGTMIVTSSYDGLYRILDAST-----  173 (262)
Q Consensus        99 ~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~d~~~-----  173 (262)
                      . ..+..|-.   |.+|+..+.+ .|.+||+++++.++.+...  +|..+.|++++.+++..+.+ .+.+++...     
T Consensus       108 ~-~~~~~If~---G~LL~~~~~~-~i~~yDw~~~~~i~~i~v~--~vk~V~Ws~~g~~val~t~~-~i~il~~~~~~~~~  179 (443)
T PF04053_consen  108 P-FSVEKIFG---GNLLGVKSSD-FICFYDWETGKLIRRIDVS--AVKYVIWSDDGELVALVTKD-SIYILKYNLEAVAA  179 (443)
T ss_dssp             S-S-EEEEE----SSSEEEEETT-EEEEE-TTT--EEEEESS---E-EEEEE-TTSSEEEEE-S--SEEEEEE-HHHHHH
T ss_pred             C-cccceEEc---CcEEEEECCC-CEEEEEhhHcceeeEEecC--CCcEEEEECCCCEEEEEeCC-eEEEEEecchhccc
Confidence            1 12333322   8888777644 8999999999999998643  48999999999999888755 455554332     


Q ss_pred             -------------CC-ccEEEEEcCCCeEEEEecCCCceeeEEeccCCceeEEEEEEecCCCeeEEccccceEEEEEcCC
Q 042146          174 -------------PN-GKFILVGTLDNTLRLWNYSTRKILKTYSGYTNSKYCISSTFSVTNGKYIVSHRDPVISVASHPA  239 (262)
Q Consensus       174 -------------~~-~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~  239 (262)
                                   .. ...+-+|..++.+.+|-..+ +.-. +.+.+..              .+..-+.++.=+...|.
T Consensus       180 ~~~~g~e~~f~~~~E~~~~IkSg~W~~d~fiYtT~~-~lkY-l~~Ge~~--------------~i~~ld~~~yllgy~~~  243 (443)
T PF04053_consen  180 IPEEGVEDAFELIHEISERIKSGCWVEDCFIYTTSN-HLKY-LVNGETG--------------IIAHLDKPLYLLGYLPK  243 (443)
T ss_dssp             BTTTB-GGGEEEEEEE-S--SEEEEETTEEEEE-TT-EEEE-EETTEEE--------------EEEE-SS--EEEEEETT
T ss_pred             ccccCchhceEEEEEecceeEEEEEEcCEEEEEcCC-eEEE-EEcCCcc--------------eEEEcCCceEEEEEEcc
Confidence                         11 23445556666666776544 3333 3321111              11113556667777887


Q ss_pred             CCeEEEeeecCCCcEEEEeec
Q 042146          240 KNIIASGALDNDRTMKIWTQE  260 (262)
Q Consensus       240 ~~~l~~~~~d~d~~i~iw~~~  260 (262)
                      .+.+....  .|+.|..+.++
T Consensus       244 ~~~ly~~D--r~~~v~~~~ld  262 (443)
T PF04053_consen  244 ENRLYLID--RDGNVISYELD  262 (443)
T ss_dssp             TTEEEEE---TT--EEEEE--
T ss_pred             CCEEEEEE--CCCCEEEEEEC
Confidence            77888877  78888877664

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.

>KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=98.20  E-value=1.1e-05  Score=65.54  Aligned_cols=95  Identities=17%  Similarity=0.259  Sum_probs=73.0

Q ss_pred             CcCceEEEEEccCCCeEEEecCCCeEEEeecCCCCCCCCCCCCCCccccCCccccccceeEEEEecCCCccceecccCCc
Q 042146           22 HLRAVSYVKFSHDGRLLTSSSAEKTLLTYSLSSISNFDSTPPSPLQKFTGHEQGISDLATIRLWDVPTATSLKTLIGHTN  101 (262)
Q Consensus        22 h~~~v~~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~i~v~d~~~~~~~~~~~~~~~  101 (262)
                      -...|.-+.|+|.-..+|.+..+|.|.+..+.-                           =++|++         +-+..
T Consensus        19 l~~~i~~~ewnP~~dLiA~~t~~gelli~R~n~---------------------------qRlwti---------p~p~~   62 (665)
T KOG4640|consen   19 LPINIKRIEWNPKMDLIATRTEKGELLIHRLNW---------------------------QRLWTI---------PIPGE   62 (665)
T ss_pred             cccceEEEEEcCccchhheeccCCcEEEEEecc---------------------------ceeEec---------cCCCC
Confidence            345688899999999999999999988885431                           244444         33444


Q ss_pred             ceE-EEEEeCCCCEEEeecCCCeEEEEECCCCeeeeeee-cCCCCeeeEEEcc
Q 042146          102 YVF-CINFNPQSNRIVSDTFNETIRIWDIKTGKCLKVLP-AHSDPVTAIDFNR  152 (262)
Q Consensus       102 ~v~-~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~-~~~~~v~~~~~~~  152 (262)
                      .++ +++|.|||+.++.|-.||+|++.|++++..+.... .-...|.++-|.|
T Consensus        63 ~v~~sL~W~~DGkllaVg~kdG~I~L~Dve~~~~l~~~~~s~e~~is~~~w~~  115 (665)
T KOG4640|consen   63 NVTASLCWRPDGKLLAVGFKDGTIRLHDVEKGGRLVSFLFSVETDISKGIWDR  115 (665)
T ss_pred             ccceeeeecCCCCEEEEEecCCeEEEEEccCCCceeccccccccchheeeccc
Confidence            455 99999999999999999999999999987776632 2355778888863

>KOG2444 consensus WD40 repeat protein [General function prediction only]

Probab=98.19  E-value=4.2e-06  Score=59.66  Aligned_cols=120  Identities=15%  Similarity=0.206  Sum_probs=79.7

Q ss_pred             EEeecCCCeEEEEECCCCeeee-eeecCCCCeeeEEEccCCCEEEEEeCCCeEEEEeCCC--------------------
Q 042146          115 IVSDTFNETIRIWDIKTGKCLK-VLPAHSDPVTAIDFNRDGTMIVTSSYDGLYRILDAST--------------------  173 (262)
Q Consensus       115 l~~~~~dg~i~vwd~~~~~~~~-~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~d~~~--------------------  173 (262)
                      +..-+.+|.|.-++++..+..- .-..+...   .....-+..++.|+.+|.|.+|....                    
T Consensus        33 l~~~sa~~~v~~~~~~k~k~s~rse~~~~e~---~~v~~~~~~~~vG~~dg~v~~~n~n~~g~~~d~~~s~~e~i~~~Ip  109 (238)
T KOG2444|consen   33 LRATSADGLVRERKVRKHKESCRSERFIDEG---QRVVTASAKLMVGTSDGAVYVFNWNLEGAHSDRVCSGEESIDLGIP  109 (238)
T ss_pred             hccccCCcccccchhhhhhhhhhhhhhhhcc---eeecccCceEEeecccceEEEecCCccchHHHhhhcccccceeccc
Confidence            4445667788777766433211 11112211   11122356788899999999998763                    


Q ss_pred             --CCccEEEEEcCCCeEEEEecCCCceeeEEeccCCceeEEEEEEecCCCeeEEccc-cceEEEEEcCCCCeEEEe--ee
Q 042146          174 --PNGKFILVGTLDNTLRLWNYSTRKILKTYSGYTNSKYCISSTFSVTNGKYIVSHR-DPVISVASHPAKNIIASG--AL  248 (262)
Q Consensus       174 --~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~v~~~~~~p~~~~l~~~--~~  248 (262)
                        .++.+..+++.+|.|+.|+....+.+.....                      |. .++.....+..+.+++.+  | 
T Consensus       110 ~~~~~~~~c~~~~dg~ir~~n~~p~k~~g~~g~----------------------h~~~~~e~~ivv~sd~~i~~a~~S-  166 (238)
T KOG2444|consen  110 NGRDSSLGCVGAQDGRIRACNIKPNKVLGYVGQ----------------------HNFESGEELIVVGSDEFLKIADTS-  166 (238)
T ss_pred             cccccceeEEeccCCceeeeccccCceeeeecc----------------------ccCCCcceeEEecCCceEEeeccc-
Confidence              3455888999999999999988877766655                      44 556666666677777777  6 


Q ss_pred             cCCCcEEEEeecc
Q 042146          249 DNDRTMKIWTQEK  261 (262)
Q Consensus       249 d~d~~i~iw~~~~  261 (262)
                       .|..++.|++.+
T Consensus       167 -~d~~~k~W~ve~  178 (238)
T KOG2444|consen  167 -HDRVLKKWNVEK  178 (238)
T ss_pred             -cchhhhhcchhh
Confidence             678888888764

>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]

Probab=98.18  E-value=0.0015  Score=50.46  Aligned_cols=102  Identities=14%  Similarity=0.137  Sum_probs=68.2

Q ss_pred             cceEEEEEeCCCCEEEeecC-----------CCeEEEEECCCCeeeeeeecCCCCeeeEEEccCCCEEEEEeC-CCeEEE
Q 042146          101 NYVFCINFNPQSNRIVSDTF-----------NETIRIWDIKTGKCLKVLPAHSDPVTAIDFNRDGTMIVTSSY-DGLYRI  168 (262)
Q Consensus       101 ~~v~~~~~~~~~~~l~~~~~-----------dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-dg~i~~  168 (262)
                      ...+.+.+.|+|.+.++...           -|.|+.+|. .+..+..+..+-..-+.|+||||++.|+.+.. .+.|.-
T Consensus       111 ~r~ND~~v~pdG~~wfgt~~~~~~~~~~~~~~G~lyr~~p-~g~~~~l~~~~~~~~NGla~SpDg~tly~aDT~~~~i~r  189 (307)
T COG3386         111 NRPNDGVVDPDGRIWFGDMGYFDLGKSEERPTGSLYRVDP-DGGVVRLLDDDLTIPNGLAFSPDGKTLYVADTPANRIHR  189 (307)
T ss_pred             CCCCceeEcCCCCEEEeCCCccccCccccCCcceEEEEcC-CCCEEEeecCcEEecCceEECCCCCEEEEEeCCCCeEEE
Confidence            34567888888887765444           144555554 45555655555555688999999988877765 478888


Q ss_pred             EeCCC---------------------------CCccEEEEEcCCC-eEEEEecCCCceeeEEec
Q 042146          169 LDAST---------------------------PNGKFILVGTLDN-TLRLWNYSTRKILKTYSG  204 (262)
Q Consensus       169 ~d~~~---------------------------~~~~~l~~~~~dg-~i~i~d~~~~~~~~~~~~  204 (262)
                      |++..                           .++.+-+++..+| .|.+|+.. |+++..+..
T Consensus       190 ~~~d~~~g~~~~~~~~~~~~~~~G~PDG~~vDadG~lw~~a~~~g~~v~~~~pd-G~l~~~i~l  252 (307)
T COG3386         190 YDLDPATGPIGGRRGFVDFDEEPGLPDGMAVDADGNLWVAAVWGGGRVVRFNPD-GKLLGEIKL  252 (307)
T ss_pred             EecCcccCccCCcceEEEccCCCCCCCceEEeCCCCEEEecccCCceEEEECCC-CcEEEEEEC
Confidence            87652                           3445554444443 78888877 888877765

>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]

Probab=98.16  E-value=0.0012  Score=48.52  Aligned_cols=121  Identities=10%  Similarity=0.074  Sum_probs=75.5

Q ss_pred             eEEEEecCCCccceecccCCcceEEEEEeCCCCEEEeecCCCeEEEEECCCCeeeeeeecCCCCeeeEEEccCCCEEEEE
Q 042146           81 TIRLWDVPTATSLKTLIGHTNYVFCINFNPQSNRIVSDTFNETIRIWDIKTGKCLKVLPAHSDPVTAIDFNRDGTMIVTS  160 (262)
Q Consensus        81 ~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~  160 (262)
                      .+++.+..+|.....+.....-=......+++.++..|+.|+..+..|.++..++...+...+-..+-+..|-...|+.+
T Consensus        74 ~lYfl~~~tGs~~w~f~~~~~vk~~a~~d~~~glIycgshd~~~yalD~~~~~cVykskcgG~~f~sP~i~~g~~sly~a  153 (354)
T KOG4649|consen   74 GLYFLCVKTGSQIWNFVILETVKVRAQCDFDGGLIYCGSHDGNFYALDPKTYGCVYKSKCGGGTFVSPVIAPGDGSLYAA  153 (354)
T ss_pred             cEEEEEecchhheeeeeehhhhccceEEcCCCceEEEecCCCcEEEecccccceEEecccCCceeccceecCCCceEEEE
Confidence            56777788887766654332222234567799999999999999999999999988876554444444555633345555


Q ss_pred             eCCCeEEEEeCCC--------------------CCccEEEEEcCCCeEEEEecCCCceeeEE
Q 042146          161 SYDGLYRILDAST--------------------PNGKFILVGTLDNTLRLWNYSTRKILKTY  202 (262)
Q Consensus       161 ~~dg~i~~~d~~~--------------------~~~~~l~~~~~dg~i~i~d~~~~~~~~~~  202 (262)
                      ...|.+.--....                    --+..+..++-||.+.-++ +.|+.+..+
T Consensus       154 ~t~G~vlavt~~~~~~~~~w~~~~~~PiF~splcv~~sv~i~~VdG~l~~f~-~sG~qvwr~  214 (354)
T KOG4649|consen  154 ITAGAVLAVTKNPYSSTEFWAATRFGPIFASPLCVGSSVIITTVDGVLTSFD-ESGRQVWRP  214 (354)
T ss_pred             eccceEEEEccCCCCcceehhhhcCCccccCceeccceEEEEEeccEEEEEc-CCCcEEEee
Confidence            5555554433332                    1234555566677666555 445554443

>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]

Probab=98.14  E-value=3.6e-05  Score=61.79  Aligned_cols=59  Identities=20%  Similarity=0.304  Sum_probs=46.1

Q ss_pred             ceEEEEEeCCCCEEEeecCCCeEEEEECCCCeeeeeeecCCCCeeeEEEccCCCEEEEEeCC
Q 042146          102 YVFCINFNPQSNRIVSDTFNETIRIWDIKTGKCLKVLPAHSDPVTAIDFNRDGTMIVTSSYD  163 (262)
Q Consensus       102 ~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d  163 (262)
                      .-+-+.|+|-|.||++-...| |.+|--++-..++.+. |. .|.-+.|||..++|++=+..
T Consensus       212 Tetyv~wSP~GTYL~t~Hk~G-I~lWGG~~f~r~~RF~-Hp-~Vq~idfSP~EkYLVT~s~~  270 (698)
T KOG2314|consen  212 TETYVRWSPKGTYLVTFHKQG-IALWGGESFDRIQRFY-HP-GVQFIDFSPNEKYLVTYSPE  270 (698)
T ss_pred             eeeeEEecCCceEEEEEeccc-eeeecCccHHHHHhcc-CC-CceeeecCCccceEEEecCC
Confidence            456789999999999987655 6889766666666663 54 47889999999999987653

>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal

Probab=98.13  E-value=0.00049  Score=51.00  Aligned_cols=67  Identities=12%  Similarity=0.192  Sum_probs=47.8

Q ss_pred             EEEeCCCCEEEeecCCCeEEEEECCCC--eeeeee---ecCCCCeeeEEEccCCCEEEEEeCCCeEEEEeCCC
Q 042146          106 INFNPQSNRIVSDTFNETIRIWDIKTG--KCLKVL---PAHSDPVTAIDFNRDGTMIVTSSYDGLYRILDAST  173 (262)
Q Consensus       106 ~~~~~~~~~l~~~~~dg~i~vwd~~~~--~~~~~~---~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~d~~~  173 (262)
                      ++.+.+|++||..- |..|.|-..+..  ..+...   +...-+=..++||||+..|+.+...|+|++||+..
T Consensus         3 ~~~~~~Gk~lAi~q-d~~iEiRsa~Ddf~si~~kcqVpkD~~PQWRkl~WSpD~tlLa~a~S~G~i~vfdl~g   74 (282)
T PF15492_consen    3 LALSSDGKLLAILQ-DQCIEIRSAKDDFSSIIGKCQVPKDPNPQWRKLAWSPDCTLLAYAESTGTIRVFDLMG   74 (282)
T ss_pred             eeecCCCcEEEEEe-ccEEEEEeccCCchheeEEEecCCCCCchheEEEECCCCcEEEEEcCCCeEEEEeccc
Confidence            45677888887764 667777655432  122222   22233567899999999999999999999999875

>smart00320 WD40 WD40 repeats

Probab=98.12  E-value=1.5e-05  Score=40.33  Aligned_cols=39  Identities=38%  Similarity=0.721  Sum_probs=33.5

Q ss_pred             CeeeeeeecCCCCeeeEEEccCCCEEEEEeCCCeEEEEe
Q 042146          132 GKCLKVLPAHSDPVTAIDFNRDGTMIVTSSYDGLYRILD  170 (262)
Q Consensus       132 ~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~d  170 (262)
                      +++...+..|...|.++.|++++..+++++.|+.+++|+
T Consensus         2 ~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~   40 (40)
T smart00320        2 GELLKTLKGHTGPVTSVAFSPDGKYLASASDDGTIKLWD   40 (40)
T ss_pred             cEEEEEEEecCCceeEEEECCCCCEEEEecCCCeEEEcC
Confidence            345666778889999999999889999999999999986

Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.

>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species

Probab=98.11  E-value=0.0019  Score=48.59  Aligned_cols=154  Identities=16%  Similarity=0.192  Sum_probs=89.6

Q ss_pred             eEEEEecCCCccceecccCCcceEEEEEe-CCCCEEEeecCCCeEEEEECCCCeeeeeeec-----CCCCeeeEEEccCC
Q 042146           81 TIRLWDVPTATSLKTLIGHTNYVFCINFN-PQSNRIVSDTFNETIRIWDIKTGKCLKVLPA-----HSDPVTAIDFNRDG  154 (262)
Q Consensus        81 ~i~v~d~~~~~~~~~~~~~~~~v~~~~~~-~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~-----~~~~v~~~~~~~~~  154 (262)
                      .|..|+..++.... +... . ...+++. +++.++++ ... .+.++|+.+++.......     .....+++++.|+|
T Consensus        23 ~i~~~~~~~~~~~~-~~~~-~-~~G~~~~~~~g~l~v~-~~~-~~~~~d~~~g~~~~~~~~~~~~~~~~~~ND~~vd~~G   97 (246)
T PF08450_consen   23 RIYRVDPDTGEVEV-IDLP-G-PNGMAFDRPDGRLYVA-DSG-GIAVVDPDTGKVTVLADLPDGGVPFNRPNDVAVDPDG   97 (246)
T ss_dssp             EEEEEETTTTEEEE-EESS-S-EEEEEEECTTSEEEEE-ETT-CEEEEETTTTEEEEEEEEETTCSCTEEEEEEEE-TTS
T ss_pred             EEEEEECCCCeEEE-EecC-C-CceEEEEccCCEEEEE-EcC-ceEEEecCCCcEEEEeeccCCCcccCCCceEEEcCCC
Confidence            46777776654432 2211 1 6777888 56554444 444 445569988865443332     23467899999999


Q ss_pred             CEEEEEeCC--------CeEEEEeCCC------------------CCccEEE-EEcCCCeEEEEecCCCce-e---eEEe
Q 042146          155 TMIVTSSYD--------GLYRILDAST------------------PNGKFIL-VGTLDNTLRLWNYSTRKI-L---KTYS  203 (262)
Q Consensus       155 ~~l~~~~~d--------g~i~~~d~~~------------------~~~~~l~-~~~~dg~i~i~d~~~~~~-~---~~~~  203 (262)
                      ++.++....        |.+..++...                  ++++.|+ +-+..+.|..+++..... +   ..+.
T Consensus        98 ~ly~t~~~~~~~~~~~~g~v~~~~~~~~~~~~~~~~~~pNGi~~s~dg~~lyv~ds~~~~i~~~~~~~~~~~~~~~~~~~  177 (246)
T PF08450_consen   98 NLYVTDSGGGGASGIDPGSVYRIDPDGKVTVVADGLGFPNGIAFSPDGKTLYVADSFNGRIWRFDLDADGGELSNRRVFI  177 (246)
T ss_dssp             -EEEEEECCBCTTCGGSEEEEEEETTSEEEEEEEEESSEEEEEEETTSSEEEEEETTTTEEEEEEEETTTCCEEEEEEEE
T ss_pred             CEEEEecCCCccccccccceEEECCCCeEEEEecCcccccceEECCcchheeecccccceeEEEeccccccceeeeeeEE
Confidence            977776543        5577777663                  6676554 556777788887753221 1   1111


Q ss_pred             ccCCceeEEEEEEecCCCeeEEccccceEEEEEcCCCCeEEEeeecCCCcEEEEeec
Q 042146          204 GYTNSKYCISSTFSVTNGKYIVSHRDPVISVASHPAKNIIASGALDNDRTMKIWTQE  260 (262)
Q Consensus       204 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~d~d~~i~iw~~~  260 (262)
                      ....                   ..+..-.+++..+|++.++.-  ..+.|.+++.+
T Consensus       178 ~~~~-------------------~~g~pDG~~vD~~G~l~va~~--~~~~I~~~~p~  213 (246)
T PF08450_consen  178 DFPG-------------------GPGYPDGLAVDSDGNLWVADW--GGGRIVVFDPD  213 (246)
T ss_dssp             E-SS-------------------SSCEEEEEEEBTTS-EEEEEE--TTTEEEEEETT
T ss_pred             EcCC-------------------CCcCCCcceEcCCCCEEEEEc--CCCEEEEECCC
Confidence            1000                   112366788888888777655  56778777764

These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....

>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]

Probab=98.11  E-value=0.00022  Score=62.50  Aligned_cols=70  Identities=13%  Similarity=0.154  Sum_probs=57.6

Q ss_pred             CcceEEEEEeCCCCEEEeecCCCeEEEEECCCCeeeeeeecCCCCeeeEEEccCCCEEEEEeCCCeEEEEe
Q 042146          100 TNYVFCINFNPQSNRIVSDTFNETIRIWDIKTGKCLKVLPAHSDPVTAIDFNRDGTMIVTSSYDGLYRILD  170 (262)
Q Consensus       100 ~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~d  170 (262)
                      ...|.++.|..+++.++.+...|.|.+-|.++... .....-...|.+++|+||+..++..+..+++.+-+
T Consensus        68 d~~i~s~~fl~d~~~i~v~~~~G~iilvd~et~~~-eivg~vd~GI~aaswS~Dee~l~liT~~~tll~mT  137 (1265)
T KOG1920|consen   68 DDEIVSVQFLADTNSICVITALGDIILVDPETLEL-EIVGNVDNGISAASWSPDEELLALITGRQTLLFMT  137 (1265)
T ss_pred             CcceEEEEEecccceEEEEecCCcEEEEcccccce-eeeeeccCceEEEeecCCCcEEEEEeCCcEEEEEe
Confidence            36899999999999999999999999999887653 23334567899999999999999999888876544

>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]

Probab=98.10  E-value=0.0001  Score=62.36  Aligned_cols=49  Identities=6%  Similarity=0.175  Sum_probs=37.4

Q ss_pred             EEEEecCCCccceecccCCcceEEEEEeCCCCEEEeecCCCeEEEEECC
Q 042146           82 IRLWDVPTATSLKTLIGHTNYVFCINFNPQSNRIVSDTFNETIRIWDIK  130 (262)
Q Consensus        82 i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~  130 (262)
                      +.+|...+.+.-.....|..+|..+.|+|+|..++++..-|.|.+|...
T Consensus        83 ~~v~~~~~~e~htv~~th~a~i~~l~wS~~G~~l~t~d~~g~v~lwr~d  131 (1416)
T KOG3617|consen   83 SDVQKTNTTETHTVVETHPAPIQGLDWSHDGTVLMTLDNPGSVHLWRYD  131 (1416)
T ss_pred             eEEEecCCceeeeeccCCCCCceeEEecCCCCeEEEcCCCceeEEEEee
Confidence            3344444443333445689999999999999999999999999999764

>KOG3621 consensus WD40 repeat-containing protein [General function prediction only]

Probab=98.09  E-value=5.6e-05  Score=62.35  Aligned_cols=118  Identities=8%  Similarity=0.071  Sum_probs=75.0

Q ss_pred             CcceEEEEEeCCCCEEEeecCCCeEEEEECCCCeeeeeee-cCCCCeeeEEEccCCCEEEEEeCCCeEEEEeCCCCCccE
Q 042146          100 TNYVFCINFNPQSNRIVSDTFNETIRIWDIKTGKCLKVLP-AHSDPVTAIDFNRDGTMIVTSSYDGLYRILDASTPNGKF  178 (262)
Q Consensus       100 ~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~-~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~  178 (262)
                      ...|.--+++..+++++.|+..|.+++|+-..++....-. +..+.+.....+++..+++.|+..|.             
T Consensus        33 ~~~v~lTc~dst~~~l~~GsS~G~lyl~~R~~~~~~~~~~~~~~~~~~~~~vs~~e~lvAagt~~g~-------------   99 (726)
T KOG3621|consen   33 PARVKLTCVDATEEYLAMGSSAGSVYLYNRHTGEMRKLKNEGATGITCVRSVSSVEYLVAAGTASGR-------------   99 (726)
T ss_pred             cceEEEEEeecCCceEEEecccceEEEEecCchhhhcccccCccceEEEEEecchhHhhhhhcCCce-------------
Confidence            3445555667789999999999999999966554432222 23344555566665555555555444             


Q ss_pred             EEEEcCCCeEEEEecCCCcee---eEEeccCCceeEEEEEEecCCCeeEEccccceEEEEEcCCCCeEEEeeecCCCcEE
Q 042146          179 ILVGTLDNTLRLWNYSTRKIL---KTYSGYTNSKYCISSTFSVTNGKYIVSHRDPVISVASHPAKNIIASGALDNDRTMK  255 (262)
Q Consensus       179 l~~~~~dg~i~i~d~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~d~d~~i~  255 (262)
                               |.++.+....+.   ..-+.+.                   .|...|++++|++++..|++|.  ..|+|.
T Consensus       100 ---------V~v~ql~~~~p~~~~~~t~~d~-------------------~~~~rVTal~Ws~~~~k~ysGD--~~Gkv~  149 (726)
T KOG3621|consen  100 ---------VSVFQLNKELPRDLDYVTPCDK-------------------SHKCRVTALEWSKNGMKLYSGD--SQGKVV  149 (726)
T ss_pred             ---------EEeehhhccCCCcceeeccccc-------------------cCCceEEEEEecccccEEeecC--CCceEE
Confidence                     444444332111   1101100                   1788999999999999999998  889988


Q ss_pred             EEeec
Q 042146          256 IWTQE  260 (262)
Q Consensus       256 iw~~~  260 (262)
                      +-.++
T Consensus       150 ~~~L~  154 (726)
T KOG3621|consen  150 LTELD  154 (726)
T ss_pred             EEEec
Confidence            76654

>PRK02888 nitrous-oxide reductase; Validated

Probab=98.03  E-value=0.00053  Score=57.09  Aligned_cols=82  Identities=12%  Similarity=0.208  Sum_probs=60.7

Q ss_pred             CCCEEEeecCCCeEEEEECCC-----CeeeeeeecCCCCeeeEEEccCCCEEEEEe-CCCeEEEEeCCC-----------
Q 042146          111 QSNRIVSDTFNETIRIWDIKT-----GKCLKVLPAHSDPVTAIDFNRDGTMIVTSS-YDGLYRILDAST-----------  173 (262)
Q Consensus       111 ~~~~l~~~~~dg~i~vwd~~~-----~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~dg~i~~~d~~~-----------  173 (262)
                      +|++...  .++.|.+.|.++     .+.+..+.. ......+.++|||+++++++ .+.++.++|+..           
T Consensus       287 dGK~~~V--~gn~V~VID~~t~~~~~~~v~~yIPV-GKsPHGV~vSPDGkylyVanklS~tVSVIDv~k~k~~~~~~~~~  363 (635)
T PRK02888        287 AGKFKTI--GGSKVPVVDGRKAANAGSALTRYVPV-PKNPHGVNTSPDGKYFIANGKLSPTVTVIDVRKLDDLFDGKIKP  363 (635)
T ss_pred             CCCEEEE--CCCEEEEEECCccccCCcceEEEEEC-CCCccceEECCCCCEEEEeCCCCCcEEEEEChhhhhhhhccCCc
Confidence            4555444  256799999887     345555544 44568999999999877765 689999999876           


Q ss_pred             --------------------CCccEEEEEcCCCeEEEEecCC
Q 042146          174 --------------------PNGKFILVGTLDNTLRLWNYST  195 (262)
Q Consensus       174 --------------------~~~~~l~~~~~dg~i~i~d~~~  195 (262)
                                          .+|....+--.|..|..||+..
T Consensus       364 ~~~vvaevevGlGPLHTaFDg~G~aytslf~dsqv~kwn~~~  405 (635)
T PRK02888        364 RDAVVAEPELGLGPLHTAFDGRGNAYTTLFLDSQIVKWNIEA  405 (635)
T ss_pred             cceEEEeeccCCCcceEEECCCCCEEEeEeecceeEEEehHH
Confidence                                4566666667888899999875

>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region

Probab=98.02  E-value=0.001  Score=42.39  Aligned_cols=100  Identities=16%  Similarity=0.186  Sum_probs=65.3

Q ss_pred             eEEEEEcc---C-CCeEEEecCCCeEEEeecCCCCCCCCCCCCCCccccCCccccccceeEEEEecCCCccceecccCCc
Q 042146           26 VSYVKFSH---D-GRLLTSSSAEKTLLTYSLSSISNFDSTPPSPLQKFTGHEQGISDLATIRLWDVPTATSLKTLIGHTN  101 (262)
Q Consensus        26 v~~~~~~~---~-~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~i~v~d~~~~~~~~~~~~~~~  101 (262)
                      |++|++..   + .+.|++|+.|..|++|+-                                     .+.+.++. ..+
T Consensus         2 V~al~~~d~d~dg~~eLlvGs~D~~IRvf~~-------------------------------------~e~~~Ei~-e~~   43 (111)
T PF14783_consen    2 VTALCLFDFDGDGENELLVGSDDFEIRVFKG-------------------------------------DEIVAEIT-ETD   43 (111)
T ss_pred             eeEEEEEecCCCCcceEEEecCCcEEEEEeC-------------------------------------CcEEEEEe-ccc
Confidence            67777755   3 258999999999999942                                     23344443 345


Q ss_pred             ceEEEEEeCCCCEEEeecCCCeEEEEECCCCeeeeeeecCCCCeeeEEEcc-CC---CEEEEEeCCCeEE
Q 042146          102 YVFCINFNPQSNRIVSDTFNETIRIWDIKTGKCLKVLPAHSDPVTAIDFNR-DG---TMIVTSSYDGLYR  167 (262)
Q Consensus       102 ~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~-~~---~~l~~~~~dg~i~  167 (262)
                      .|+++.-... ..++.+..+|+|-+|+-  .+.++..+. +..++++.+.. ++   ..|++|-.+|.|-
T Consensus        44 ~v~~L~~~~~-~~F~Y~l~NGTVGvY~~--~~RlWRiKS-K~~~~~~~~~D~~gdG~~eLI~GwsnGkve  109 (111)
T PF14783_consen   44 KVTSLCSLGG-GRFAYALANGTVGVYDR--SQRLWRIKS-KNQVTSMAFYDINGDGVPELIVGWSNGKVE  109 (111)
T ss_pred             ceEEEEEcCC-CEEEEEecCCEEEEEeC--cceeeeecc-CCCeEEEEEEcCCCCCceEEEEEecCCeEE
Confidence            5677766654 66888899999999974  344556653 34466666554 32   2577777776653

>KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.01  E-value=0.00017  Score=57.90  Aligned_cols=124  Identities=19%  Similarity=0.270  Sum_probs=90.7

Q ss_pred             CCCCEE-EeecCCCeEEEEECCCCeeeeeeecCCCCeeeEEEccCCC--E-----EEEEeCCCeEEEEeCCC--------
Q 042146          110 PQSNRI-VSDTFNETIRIWDIKTGKCLKVLPAHSDPVTAIDFNRDGT--M-----IVTSSYDGLYRILDAST--------  173 (262)
Q Consensus       110 ~~~~~l-~~~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~--~-----l~~~~~dg~i~~~d~~~--------  173 (262)
                      .+.+++ .++.....++-.|++.|+.+.+.+.+.. |+-+.+.|+.+  .     =+.|-.|..|.-||.|.        
T Consensus       343 ~dsnlil~~~~~~~~l~klDIE~GKIVeEWk~~~d-i~mv~~t~d~K~~Ql~~e~TlvGLs~n~vfriDpRv~~~~kl~~  421 (644)
T KOG2395|consen  343 ADSNLILMDGGEQDKLYKLDIERGKIVEEWKFEDD-INMVDITPDFKFAQLTSEQTLVGLSDNSVFRIDPRVQGKNKLAV  421 (644)
T ss_pred             cccceEeeCCCCcCcceeeecccceeeeEeeccCC-cceeeccCCcchhcccccccEEeecCCceEEecccccCcceeee
Confidence            344444 4566667889999999999999987666 77777877543  2     34566788899999886        


Q ss_pred             -----------------CCccEEEEEcCCCeEEEEecCCCceeeEEeccCCceeEEEEEEecCCCeeEEccccceEEEEE
Q 042146          174 -----------------PNGKFILVGTLDNTLRLWNYSTRKILKTYSGYTNSKYCISSTFSVTNGKYIVSHRDPVISVAS  236 (262)
Q Consensus       174 -----------------~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~  236 (262)
                                       ....++++|+.+|.|++||.-..+.-..+++                      -..+|..+..
T Consensus       422 ~q~kqy~~k~nFsc~aTT~sG~IvvgS~~GdIRLYdri~~~AKTAlPg----------------------LG~~I~hVdv  479 (644)
T KOG2395|consen  422 VQSKQYSTKNNFSCFATTESGYIVVGSLKGDIRLYDRIGRRAKTALPG----------------------LGDAIKHVDV  479 (644)
T ss_pred             eeccccccccccceeeecCCceEEEeecCCcEEeehhhhhhhhhcccc----------------------cCCceeeEEe
Confidence                             4567899999999999999743333344454                      6788999999


Q ss_pred             cCCCCeEEEeeecCCCcEEEEee
Q 042146          237 HPAKNIIASGALDNDRTMKIWTQ  259 (262)
Q Consensus       237 ~p~~~~l~~~~~d~d~~i~iw~~  259 (262)
                      +.+|+.|++.+   +..+.+-++
T Consensus       480 tadGKwil~Tc---~tyLlLi~t  499 (644)
T KOG2395|consen  480 TADGKWILATC---KTYLLLIDT  499 (644)
T ss_pred             eccCcEEEEec---ccEEEEEEE
Confidence            99999888776   445555443

>KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=98.00  E-value=4e-05  Score=62.43  Aligned_cols=92  Identities=21%  Similarity=0.351  Sum_probs=74.3

Q ss_pred             CcceEEEEEeCCCCEEEeecCCCeEEEEECCCCeeeeeeecCCCCee-eEEEccCCCEEEEEeCCCeEEEEeCCCCCc--
Q 042146          100 TNYVFCINFNPQSNRIVSDTFNETIRIWDIKTGKCLKVLPAHSDPVT-AIDFNRDGTMIVTSSYDGLYRILDASTPNG--  176 (262)
Q Consensus       100 ~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~v~-~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~--  176 (262)
                      ...+..+.|+|.-.++|.+..+|.|.+..+. .+.+.++.-|...++ +++|.|||+.|++|-.||+|++.|...+..  
T Consensus        20 ~~~i~~~ewnP~~dLiA~~t~~gelli~R~n-~qRlwtip~p~~~v~~sL~W~~DGkllaVg~kdG~I~L~Dve~~~~l~   98 (665)
T KOG4640|consen   20 PINIKRIEWNPKMDLIATRTEKGELLIHRLN-WQRLWTIPIPGENVTASLCWRPDGKLLAVGFKDGTIRLHDVEKGGRLV   98 (665)
T ss_pred             ccceEEEEEcCccchhheeccCCcEEEEEec-cceeEeccCCCCccceeeeecCCCCEEEEEecCCeEEEEEccCCCcee
Confidence            3467889999999999999999999999988 777888887787787 999999999999999999999999987321  


Q ss_pred             cEEEEEcCCCeEEEEe
Q 042146          177 KFILVGTLDNTLRLWN  192 (262)
Q Consensus       177 ~~l~~~~~dg~i~i~d  192 (262)
                      .+.++-..+-.-.+|+
T Consensus        99 ~~~~s~e~~is~~~w~  114 (665)
T KOG4640|consen   99 SFLFSVETDISKGIWD  114 (665)
T ss_pred             ccccccccchheeecc
Confidence            1233344455556675

>KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]

Probab=97.97  E-value=4.3e-06  Score=68.04  Aligned_cols=120  Identities=13%  Similarity=0.258  Sum_probs=77.3

Q ss_pred             eecccCcCceEEEEEcc-CCCeEEEec----CCCeEEEeecCCCCCCCCCCCCCCccccCCccccccceeEEEEecCCCc
Q 042146           17 QTLNGHLRAVSYVKFSH-DGRLLTSSS----AEKTLLTYSLSSISNFDSTPPSPLQKFTGHEQGISDLATIRLWDVPTAT   91 (262)
Q Consensus        17 ~~~~~h~~~v~~~~~~~-~~~~l~s~~----~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~i~v~d~~~~~   91 (262)
                      ....+|..+.++++|++ |.+.||+|-    .|..+.|||+...-.    .+..                          
T Consensus        96 E~tp~~ar~Ct~lAwneLDtn~LAagldkhrnds~~~Iwdi~s~lt----vPke--------------------------  145 (783)
T KOG1008|consen   96 EVTPGYARPCTSLAWNELDTNHLAAGLDKHRNDSSLKIWDINSLLT----VPKE--------------------------  145 (783)
T ss_pred             eecccccccccccccccccHHHHHhhhhhhcccCCccceecccccC----CCcc--------------------------
Confidence            34567888899999988 456666662    244666776654211    0000                          


Q ss_pred             cceeccc-CCcceEEEEEeCCCCEEEeecCCCeEEEEECCCC-eeeeeeecCCCCeeeEEEcc-CCCEEEEEeCCCeEEE
Q 042146           92 SLKTLIG-HTNYVFCINFNPQSNRIVSDTFNETIRIWDIKTG-KCLKVLPAHSDPVTAIDFNR-DGTMIVTSSYDGLYRI  168 (262)
Q Consensus        92 ~~~~~~~-~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~-~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~dg~i~~  168 (262)
                       ...+.+ -.....+++|..+.+++.+|.....+.++|++.. .....+  .+..+..+...| .++++++-. ||.|.+
T Consensus       146 -~~~fs~~~l~gqns~cwlrd~klvlaGm~sr~~~ifdlRqs~~~~~sv--nTk~vqG~tVdp~~~nY~cs~~-dg~iAi  221 (783)
T KOG1008|consen  146 -SPLFSSSTLDGQNSVCWLRDTKLVLAGMTSRSVHIFDLRQSLDSVSSV--NTKYVQGITVDPFSPNYFCSNS-DGDIAI  221 (783)
T ss_pred             -ccccccccccCccccccccCcchhhcccccchhhhhhhhhhhhhhhhh--hhhhcccceecCCCCCceeccc-cCceee
Confidence             001111 2233457888888999999999999999999833 212222  244566778888 777777665 999999


Q ss_pred             Ee
Q 042146          169 LD  170 (262)
Q Consensus       169 ~d  170 (262)
                      ||
T Consensus       222 wD  223 (783)
T KOG1008|consen  222 WD  223 (783)
T ss_pred             cc
Confidence            99

>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=97.92  E-value=3.4e-05  Score=59.51  Aligned_cols=85  Identities=18%  Similarity=0.249  Sum_probs=67.5

Q ss_pred             ccccceecccCcCceEEEEEccCCC-eEEEecCCCeEEEeecCCCCCCCCCCCCCCccccCCccccccceeEEEEecCCC
Q 042146           12 PYTLTQTLNGHLRAVSYVKFSHDGR-LLTSSSAEKTLLTYSLSSISNFDSTPPSPLQKFTGHEQGISDLATIRLWDVPTA   90 (262)
Q Consensus        12 ~~~~~~~~~~h~~~v~~~~~~~~~~-~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~i~v~d~~~~   90 (262)
                      +++..+.+.+|...|..++|||..+ ++..++.+++|+|.|+                                   ++.
T Consensus       182 ~fkssq~lp~~g~~IrdlafSp~~~GLl~~asl~nkiki~dl-----------------------------------et~  226 (463)
T KOG1645|consen  182 DFKSSQILPGEGSFIRDLAFSPFNEGLLGLASLGNKIKIMDL-----------------------------------ETS  226 (463)
T ss_pred             CcchhhcccccchhhhhhccCccccceeeeeccCceEEEEec-----------------------------------ccc
Confidence            4556667788999999999999877 6788888888777754                                   455


Q ss_pred             ccceecccCCcceEEEEEeC-CCCEEEeecCCCeEEEEECCCC
Q 042146           91 TSLKTLIGHTNYVFCINFNP-QSNRIVSDTFNETIRIWDIKTG  132 (262)
Q Consensus        91 ~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~dg~i~vwd~~~~  132 (262)
                      ..+..+..+ .++++++|+- +.+++++|-..|.|.+||++..
T Consensus       227 ~~vssy~a~-~~~wSC~wDlde~h~IYaGl~nG~VlvyD~R~~  268 (463)
T KOG1645|consen  227 CVVSSYIAY-NQIWSCCWDLDERHVIYAGLQNGMVLVYDMRQP  268 (463)
T ss_pred             eeeeheecc-CCceeeeeccCCcceeEEeccCceEEEEEccCC
Confidence            555566655 7899999987 4567899999999999999853

>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex

Probab=97.85  E-value=0.0093  Score=48.43  Aligned_cols=47  Identities=13%  Similarity=0.330  Sum_probs=34.8

Q ss_pred             EEEEecCCCccceecccCCcceEEEEEeCCCCEEEeecCCCeEEEEECC
Q 042146           82 IRLWDVPTATSLKTLIGHTNYVFCINFNPQSNRIVSDTFNETIRIWDIK  130 (262)
Q Consensus        82 i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~  130 (262)
                      |.+|+. .|+.+.++.-..+.+.++.|..+.. |++...||.+++||+.
T Consensus        63 I~iys~-sG~ll~~i~w~~~~iv~~~wt~~e~-LvvV~~dG~v~vy~~~  109 (410)
T PF04841_consen   63 IQIYSS-SGKLLSSIPWDSGRIVGMGWTDDEE-LVVVQSDGTVRVYDLF  109 (410)
T ss_pred             EEEECC-CCCEeEEEEECCCCEEEEEECCCCe-EEEEEcCCEEEEEeCC
Confidence            777776 4666665544448899999987654 5555679999999986

Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm

>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1

Probab=97.85  E-value=0.0075  Score=46.70  Aligned_cols=206  Identities=15%  Similarity=0.251  Sum_probs=115.2

Q ss_pred             EEEEccCCCeEEEec----------CCCeEEEeecCCCCCCCC--CCCC--C-------CccccCCccc-----ccccee
Q 042146           28 YVKFSHDGRLLTSSS----------AEKTLLTYSLSSISNFDS--TPPS--P-------LQKFTGHEQG-----ISDLAT   81 (262)
Q Consensus        28 ~~~~~~~~~~l~s~~----------~d~~i~iw~~~~~~~~~~--~~~~--~-------~~~~~~~~~~-----v~~~~~   81 (262)
                      .+..+|+++.+++++          ..-.|.+||.++......  .++.  .       ...+......     .+....
T Consensus        40 ~~~~spdgk~~y~a~T~~sR~~rG~RtDvv~~~D~~TL~~~~EI~iP~k~R~~~~~~~~~~~ls~dgk~~~V~N~TPa~S  119 (342)
T PF06433_consen   40 NVALSPDGKTIYVAETFYSRGTRGERTDVVEIWDTQTLSPTGEIEIPPKPRAQVVPYKNMFALSADGKFLYVQNFTPATS  119 (342)
T ss_dssp             EEEE-TTSSEEEEEEEEEEETTEEEEEEEEEEEETTTTEEEEEEEETTS-B--BS--GGGEEE-TTSSEEEEEEESSSEE
T ss_pred             ceeECCCCCEEEEEEEEEeccccccceeEEEEEecCcCcccceEecCCcchheecccccceEEccCCcEEEEEccCCCCe
Confidence            466899999888743          244799999877532110  0110  0       0011111111     111227


Q ss_pred             EEEEecCCCccceecccCCcceEEEEEeC-CCCEEEeecCCCeEEEEECC-CCeeeeee----ecCCCCee-eEEEccCC
Q 042146           82 IRLWDVPTATSLKTLIGHTNYVFCINFNP-QSNRIVSDTFNETIRIWDIK-TGKCLKVL----PAHSDPVT-AIDFNRDG  154 (262)
Q Consensus        82 i~v~d~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~dg~i~vwd~~-~~~~~~~~----~~~~~~v~-~~~~~~~~  154 (262)
                      |.|.|+..++.+.++.-. +   |.-..| ..+-+.+.+.||.+.-..+. .|+.....    ..-..++. .-++...+
T Consensus       120 VtVVDl~~~kvv~ei~~P-G---C~~iyP~~~~~F~~lC~DGsl~~v~Ld~~Gk~~~~~t~~F~~~~dp~f~~~~~~~~~  195 (342)
T PF06433_consen  120 VTVVDLAAKKVVGEIDTP-G---CWLIYPSGNRGFSMLCGDGSLLTVTLDADGKEAQKSTKVFDPDDDPLFEHPAYSRDG  195 (342)
T ss_dssp             EEEEETTTTEEEEEEEGT-S---EEEEEEEETTEEEEEETTSCEEEEEETSTSSEEEEEEEESSTTTS-B-S--EEETTT
T ss_pred             EEEEECCCCceeeeecCC-C---EEEEEecCCCceEEEecCCceEEEEECCCCCEeEeeccccCCCCcccccccceECCC
Confidence            888888888777665421 1   222334 23457788889998888886 45443221    11122222 23344455


Q ss_pred             CEEEEEeCCCeEEEEeCCC---------------------------------CCccEEEEEc-------CCC--eEEEEe
Q 042146          155 TMIVTSSYDGLYRILDAST---------------------------------PNGKFILVGT-------LDN--TLRLWN  192 (262)
Q Consensus       155 ~~l~~~~~dg~i~~~d~~~---------------------------------~~~~~l~~~~-------~dg--~i~i~d  192 (262)
                      ..++--+.+|.|+-.|+..                                 +.+++++.-.       .|+  .|.++|
T Consensus       196 ~~~~F~Sy~G~v~~~dlsg~~~~~~~~~~~~t~~e~~~~WrPGG~Q~~A~~~~~~rlyvLMh~g~~gsHKdpgteVWv~D  275 (342)
T PF06433_consen  196 GRLYFVSYEGNVYSADLSGDSAKFGKPWSLLTDAEKADGWRPGGWQLIAYHAASGRLYVLMHQGGEGSHKDPGTEVWVYD  275 (342)
T ss_dssp             TEEEEEBTTSEEEEEEETTSSEEEEEEEESS-HHHHHTTEEE-SSS-EEEETTTTEEEEEEEE--TT-TTS-EEEEEEEE
T ss_pred             CeEEEEecCCEEEEEeccCCcccccCcccccCccccccCcCCcceeeeeeccccCeEEEEecCCCCCCccCCceEEEEEE
Confidence            5666678888888887765                                 2233322221       111  477778


Q ss_pred             cCCCceeeEEeccCCceeEEEEEEecCCCeeEEccccceEEEEEcCCCC-eEEEeeecCCCcEEEEeecc
Q 042146          193 YSTRKILKTYSGYTNSKYCISSTFSVTNGKYIVSHRDPVISVASHPAKN-IIASGALDNDRTMKIWTQEK  261 (262)
Q Consensus       193 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~-~l~~~~~d~d~~i~iw~~~~  261 (262)
                      +.+++.+..+.                       -+.++.+|..+.+.+ +|++.+. .++.|.+||..+
T Consensus       276 ~~t~krv~Ri~-----------------------l~~~~~Si~Vsqd~~P~L~~~~~-~~~~l~v~D~~t  321 (342)
T PF06433_consen  276 LKTHKRVARIP-----------------------LEHPIDSIAVSQDDKPLLYALSA-GDGTLDVYDAAT  321 (342)
T ss_dssp             TTTTEEEEEEE-----------------------EEEEESEEEEESSSS-EEEEEET-TTTEEEEEETTT
T ss_pred             CCCCeEEEEEe-----------------------CCCccceEEEccCCCcEEEEEcC-CCCeEEEEeCcC
Confidence            88888888886                       344677888888755 6655442 578999999753

4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....

>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit

Probab=97.84  E-value=0.005  Score=48.37  Aligned_cols=155  Identities=21%  Similarity=0.207  Sum_probs=89.4

Q ss_pred             eEEEEecCCCccceeccc-CCcceEEEEEeC---C----CCEEEeecC----------CCeEEEEECCCC-----e--ee
Q 042146           81 TIRLWDVPTATSLKTLIG-HTNYVFCINFNP---Q----SNRIVSDTF----------NETIRIWDIKTG-----K--CL  135 (262)
Q Consensus        81 ~i~v~d~~~~~~~~~~~~-~~~~v~~~~~~~---~----~~~l~~~~~----------dg~i~vwd~~~~-----~--~~  135 (262)
                      .|++.|..+.+.+.++.- ....+.+++...   +    ..++++|+.          .|.|.++++...     +  .+
T Consensus         3 ~i~l~d~~~~~~~~~~~l~~~E~~~s~~~~~l~~~~~~~~~~ivVGT~~~~~~~~~~~~Gri~v~~i~~~~~~~~~l~~i   82 (321)
T PF03178_consen    3 SIRLVDPTTFEVLDSFELEPNEHVTSLCSVKLKGDSTGKKEYIVVGTAFNYGEDPEPSSGRILVFEISESPENNFKLKLI   82 (321)
T ss_dssp             EEEEEETTTSSEEEEEEEETTEEEEEEEEEEETTS---SSEEEEEEEEE--TTSSS-S-EEEEEEEECSS-----EEEEE
T ss_pred             EEEEEeCCCCeEEEEEECCCCceEEEEEEEEEcCccccccCEEEEEecccccccccccCcEEEEEEEEcccccceEEEEE
Confidence            366777777666554432 233455554432   2    456776543          289999999874     2  22


Q ss_pred             eeeecCCCCeeeEEEccCCCEEEEEeCCCeEEEEeCCCC--------------------CccEEEEEcCCCeEEEEecCC
Q 042146          136 KVLPAHSDPVTAIDFNRDGTMIVTSSYDGLYRILDASTP--------------------NGKFILVGTLDNTLRLWNYST  195 (262)
Q Consensus       136 ~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~d~~~~--------------------~~~~l~~~~~dg~i~i~d~~~  195 (262)
                      ... ...++|++++-- ++ .|+++. .+.|.+|++...                    .++++++|.....+.++....
T Consensus        83 ~~~-~~~g~V~ai~~~-~~-~lv~~~-g~~l~v~~l~~~~~l~~~~~~~~~~~i~sl~~~~~~I~vgD~~~sv~~~~~~~  158 (321)
T PF03178_consen   83 HST-EVKGPVTAICSF-NG-RLVVAV-GNKLYVYDLDNSKTLLKKAFYDSPFYITSLSVFKNYILVGDAMKSVSLLRYDE  158 (321)
T ss_dssp             EEE-EESS-EEEEEEE-TT-EEEEEE-TTEEEEEEEETTSSEEEEEEE-BSSSEEEEEEETTEEEEEESSSSEEEEEEET
T ss_pred             EEE-eecCcceEhhhh-CC-EEEEee-cCEEEEEEccCcccchhhheecceEEEEEEeccccEEEEEEcccCEEEEEEEc
Confidence            222 347889998866 34 344433 588999988762                    245666676666666653332


Q ss_pred             -CceeeEEeccCCceeEEEEEEecCCCeeEEccccceEEEEEcCCCCeEEEeeecCCCcEEEEeecc
Q 042146          196 -RKILKTYSGYTNSKYCISSTFSVTNGKYIVSHRDPVISVASHPAKNIIASGALDNDRTMKIWTQEK  261 (262)
Q Consensus       196 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~d~d~~i~iw~~~~  261 (262)
                       ...+..+....                    ....++++.|-++++.++.+.  .+|.+.++..+.
T Consensus       159 ~~~~l~~va~d~--------------------~~~~v~~~~~l~d~~~~i~~D--~~gnl~~l~~~~  203 (321)
T PF03178_consen  159 ENNKLILVARDY--------------------QPRWVTAAEFLVDEDTIIVGD--KDGNLFVLRYNP  203 (321)
T ss_dssp             TTE-EEEEEEES--------------------S-BEEEEEEEE-SSSEEEEEE--TTSEEEEEEE-S
T ss_pred             cCCEEEEEEecC--------------------CCccEEEEEEecCCcEEEEEc--CCCeEEEEEECC
Confidence             22122222111                    334578888876667777777  889999988763

CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....

>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex

Probab=97.82  E-value=0.012  Score=47.90  Aligned_cols=101  Identities=13%  Similarity=0.217  Sum_probs=61.3

Q ss_pred             cceEEEEEeCCCCEEEeecCCCeEEEEECCCCeeeeeeecC-CCCeeeEEEccCCCEEEEEeCCCeEEEEeCCC------
Q 042146          101 NYVFCINFNPQSNRIVSDTFNETIRIWDIKTGKCLKVLPAH-SDPVTAIDFNRDGTMIVTSSYDGLYRILDAST------  173 (262)
Q Consensus       101 ~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~-~~~v~~~~~~~~~~~l~~~~~dg~i~~~d~~~------  173 (262)
                      +++..|+++|+++++|.-..+|.+.+.+..-.+...++... ......|.|.-+...++.-  ...+.+.....      
T Consensus       217 ~~i~~iavSpng~~iAl~t~~g~l~v~ssDf~~~~~e~~~~~~~~p~~~~WCG~dav~l~~--~~~l~lvg~~~~~~~~~  294 (410)
T PF04841_consen  217 GPIIKIAVSPNGKFIALFTDSGNLWVVSSDFSEKLCEFDTDSKSPPKQMAWCGNDAVVLSW--EDELLLVGPDGDSISFW  294 (410)
T ss_pred             CCeEEEEECCCCCEEEEEECCCCEEEEECcccceeEEeecCcCCCCcEEEEECCCcEEEEe--CCEEEEECCCCCceEEe
Confidence            57999999999999999888999999876655555555433 3456777787543322222  33444443222      


Q ss_pred             CCccEEEEEcCCCeEEEEecCCCceeeEEec
Q 042146          174 PNGKFILVGTLDNTLRLWNYSTRKILKTYSG  204 (262)
Q Consensus       174 ~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~  204 (262)
                      -++..++..-.|| +||..-..-+.++.++.
T Consensus       295 ~~~~~~l~~E~DG-~riit~~~~~~l~~Vp~  324 (410)
T PF04841_consen  295 YDGPVILVSEIDG-VRIITSTSHEFLQRVPD  324 (410)
T ss_pred             ccCceEEeccCCc-eEEEeCCceEEEEECCH
Confidence            1223344444454 77776555555555543

Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm

>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]

Probab=97.81  E-value=0.002  Score=52.28  Aligned_cols=118  Identities=18%  Similarity=0.216  Sum_probs=72.4

Q ss_pred             eEEEEecCCCccceecccCCcceEEEEEeCCCCEEE-eecCCC--eEEEEECCCCeeeeeeecCCCCeeeEEEccCCCEE
Q 042146           81 TIRLWDVPTATSLKTLIGHTNYVFCINFNPQSNRIV-SDTFNE--TIRIWDIKTGKCLKVLPAHSDPVTAIDFNRDGTMI  157 (262)
Q Consensus        81 ~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~-~~~~dg--~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l  157 (262)
                      .+.++++.+++....+. ....-..-+|+|||+.|+ +...||  .|.++|+..++. ..+....+.-..=.|+|+|+.+
T Consensus       219 ~i~~~~l~~g~~~~i~~-~~g~~~~P~fspDG~~l~f~~~rdg~~~iy~~dl~~~~~-~~Lt~~~gi~~~Ps~spdG~~i  296 (425)
T COG0823         219 RIYYLDLNTGKRPVILN-FNGNNGAPAFSPDGSKLAFSSSRDGSPDIYLMDLDGKNL-PRLTNGFGINTSPSWSPDGSKI  296 (425)
T ss_pred             eEEEEeccCCccceeec-cCCccCCccCCCCCCEEEEEECCCCCccEEEEcCCCCcc-eecccCCccccCccCCCCCCEE
Confidence            57788888776555443 233344668999998875 445566  477778877663 3344333333466789999977


Q ss_pred             EEEe-CCCe--EEEEeCCC-------------------CCccEEEEEcCC-Ce--EEEEecCCCceee
Q 042146          158 VTSS-YDGL--YRILDAST-------------------PNGKFILVGTLD-NT--LRLWNYSTRKILK  200 (262)
Q Consensus       158 ~~~~-~dg~--i~~~d~~~-------------------~~~~~l~~~~~d-g~--i~i~d~~~~~~~~  200 (262)
                      +-.+ ..|.  |.+++...                   |++++++..+.. |.  |.+.|+.++..++
T Consensus       297 vf~Sdr~G~p~I~~~~~~g~~~~riT~~~~~~~~p~~SpdG~~i~~~~~~~g~~~i~~~~~~~~~~~~  364 (425)
T COG0823         297 VFTSDRGGRPQIYLYDLEGSQVTRLTFSGGGNSNPVWSPDGDKIVFESSSGGQWDIDKNDLASGGKIR  364 (425)
T ss_pred             EEEeCCCCCcceEEECCCCCceeEeeccCCCCcCccCCCCCCEEEEEeccCCceeeEEeccCCCCcEE
Confidence            6654 5555  44444443                   778877776643 33  5556665554333

>PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals

Probab=97.77  E-value=0.011  Score=47.51  Aligned_cols=189  Identities=15%  Similarity=0.137  Sum_probs=96.6

Q ss_pred             cccceecccCcCceEEEEEccCCCeEEEecCCCeEEEeecCCCCCCCCCCCCCCccccCCccccccceeEEEEecCCCcc
Q 042146           13 YTLTQTLNGHLRAVSYVKFSHDGRLLTSSSAEKTLLTYSLSSISNFDSTPPSPLQKFTGHEQGISDLATIRLWDVPTATS   92 (262)
Q Consensus        13 ~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~i~v~d~~~~~~   92 (262)
                      +.+...++...++|++++.|. =-++|.|..+|.+.|.|+.....                        |+-=.+..   
T Consensus        76 f~P~~l~~~~~g~vtal~~S~-iGFvaigy~~G~l~viD~RGPav------------------------I~~~~i~~---  127 (395)
T PF08596_consen   76 FLPLTLLDAKQGPVTALKNSD-IGFVAIGYESGSLVVIDLRGPAV------------------------IYNENIRE---  127 (395)
T ss_dssp             EEEEEEE---S-SEEEEEE-B-TSEEEEEETTSEEEEEETTTTEE------------------------EEEEEGGG---
T ss_pred             cCchhheeccCCcEeEEecCC-CcEEEEEecCCcEEEEECCCCeE------------------------Eeeccccc---
Confidence            455666677789999999974 44899999999999998854211                        11101111   


Q ss_pred             ceecccCCcceEEEEEeC-----CC---CEEEeecCCCeEEEEECCC---Ce----eeeeeecCCCCeeeEE-EccC---
Q 042146           93 LKTLIGHTNYVFCINFNP-----QS---NRIVSDTFNETIRIWDIKT---GK----CLKVLPAHSDPVTAID-FNRD---  153 (262)
Q Consensus        93 ~~~~~~~~~~v~~~~~~~-----~~---~~l~~~~~dg~i~vwd~~~---~~----~~~~~~~~~~~v~~~~-~~~~---  153 (262)
                      ...-......++++.|..     |+   -.+++|...|.+.+|.+.-   +.    .......+.++|..+. ++.+   
T Consensus       128 ~~~~~~~~~~vt~ieF~vm~~~~D~ySSi~L~vGTn~G~v~~fkIlp~~~g~f~v~~~~~~~~~~~~i~~I~~i~~~~G~  207 (395)
T PF08596_consen  128 SFLSKSSSSYVTSIEFSVMTLGGDGYSSICLLVGTNSGNVLTFKILPSSNGRFSVQFAGATTNHDSPILSIIPINADTGE  207 (395)
T ss_dssp             --T-SS----EEEEEEEEEE-TTSSSEEEEEEEEETTSEEEEEEEEE-GGG-EEEEEEEEE--SS----EEEEEETTT--
T ss_pred             cccccccccCeeEEEEEEEecCCCcccceEEEEEeCCCCEEEEEEecCCCCceEEEEeeccccCCCceEEEEEEECCCCC
Confidence            001112335677777763     22   3588899999999997741   11    1112223455555544 2111   


Q ss_pred             -----------------CCEEEEEeCCCeEEEEeCCC-------------------------CCccEEEEEcCCCeEEEE
Q 042146          154 -----------------GTMIVTSSYDGLYRILDAST-------------------------PNGKFILVGTLDNTLRLW  191 (262)
Q Consensus       154 -----------------~~~l~~~~~dg~i~~~d~~~-------------------------~~~~~l~~~~~dg~i~i~  191 (262)
                                       -..++....+..++++....                         ..+..|++-..+|.|++|
T Consensus       208 ~a~At~~~~~~l~~g~~i~g~vVvvSe~~irv~~~~~~k~~~K~~~~~~~~~~~~vv~~~~~~~~~~Lv~l~~~G~i~i~  287 (395)
T PF08596_consen  208 SALATISAMQGLSKGISIPGYVVVVSESDIRVFKPPKSKGAHKSFDDPFLCSSASVVPTISRNGGYCLVCLFNNGSIRIY  287 (395)
T ss_dssp             B-B-BHHHHHGGGGT----EEEEEE-SSEEEEE-TT---EEEEE-SS-EEEEEEEEEEEE-EEEEEEEEEEETTSEEEEE
T ss_pred             cccCchhHhhccccCCCcCcEEEEEcccceEEEeCCCCcccceeeccccccceEEEEeecccCCceEEEEEECCCcEEEE
Confidence                             12344455567778777654                         135566666788899999


Q ss_pred             ecCCCceeeEEeccCCceeEEEEEEecCCCeeEEccccceEEEEEcCCCCeEEEee
Q 042146          192 NYSTRKILKTYSGYTNSKYCISSTFSVTNGKYIVSHRDPVISVASHPAKNIIASGA  247 (262)
Q Consensus       192 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~  247 (262)
                      .+...+.+..++-....                  ....+....++++|..++-.+
T Consensus       288 SLP~Lkei~~~~l~~~~------------------d~~~~~~ssis~~Gdi~~~~g  325 (395)
T PF08596_consen  288 SLPSLKEIKSVSLPPPL------------------DSRRLSSSSISRNGDIFYWTG  325 (395)
T ss_dssp             ETTT--EEEEEE-SS---------------------HHHHTT-EE-TTS-EEEE-S
T ss_pred             ECCCchHhhcccCCCcc------------------ccccccccEECCCCCEEEEeC
Confidence            98888777776642110                  223344566677888776654

The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A.

>KOG2444 consensus WD40 repeat protein [General function prediction only]

Probab=97.75  E-value=0.00017  Score=51.72  Aligned_cols=32  Identities=25%  Similarity=0.255  Sum_probs=26.3

Q ss_pred             CCCEEEeecCCCeEEEEECCCCeeeeeeecCC
Q 042146          111 QSNRIVSDTFNETIRIWDIKTGKCLKVLPAHS  142 (262)
Q Consensus       111 ~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~  142 (262)
                      ++.+..+++.+|.|+.|++.-++.+-....|+
T Consensus       113 ~~~~~c~~~~dg~ir~~n~~p~k~~g~~g~h~  144 (238)
T KOG2444|consen  113 DSSLGCVGAQDGRIRACNIKPNKVLGYVGQHN  144 (238)
T ss_pred             ccceeEEeccCCceeeeccccCceeeeecccc
Confidence            55678899999999999998888776666666

>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins

Probab=97.73  E-value=0.0058  Score=52.94  Aligned_cols=89  Identities=20%  Similarity=0.320  Sum_probs=60.3

Q ss_pred             eEEEEecCCCc-ccee----cccCCcceEEEEEeCCCCEEEeecCCCeEEEEECCCCeeeeeeecCCCCeeeEEEccCCC
Q 042146           81 TIRLWDVPTAT-SLKT----LIGHTNYVFCINFNPQSNRIVSDTFNETIRIWDIKTGKCLKVLPAHSDPVTAIDFNRDGT  155 (262)
Q Consensus        81 ~i~v~d~~~~~-~~~~----~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~  155 (262)
                      .+..||.+-.. .+..    ........+|++-..+ .+||+|+.+|.|++||--..+....+++-..+|..|..+.||+
T Consensus       553 ~lfriDpR~~~~k~v~~~~k~Y~~~~~Fs~~aTt~~-G~iavgs~~G~IRLyd~~g~~AKT~lp~lG~pI~~iDvt~DGk  631 (794)
T PF08553_consen  553 SLFRIDPRLSGNKLVDSQSKQYSSKNNFSCFATTED-GYIAVGSNKGDIRLYDRLGKRAKTALPGLGDPIIGIDVTADGK  631 (794)
T ss_pred             ceEEeccCCCCCceeeccccccccCCCceEEEecCC-ceEEEEeCCCcEEeecccchhhhhcCCCCCCCeeEEEecCCCc
Confidence            68888887532 2211    1123455777776654 4789999999999999433233344566678999999999999


Q ss_pred             EEEEEeCCCeEEEEeC
Q 042146          156 MIVTSSYDGLYRILDA  171 (262)
Q Consensus       156 ~l~~~~~dg~i~~~d~  171 (262)
                      ++++.+ +..+.+++.
T Consensus       632 wilaTc-~tyLlLi~t  646 (794)
T PF08553_consen  632 WILATC-KTYLLLIDT  646 (794)
T ss_pred             EEEEee-cceEEEEEE
Confidence            877666 445666664

Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].

>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]

Probab=97.73  E-value=0.0033  Score=51.03  Aligned_cols=141  Identities=18%  Similarity=0.228  Sum_probs=86.8

Q ss_pred             EEEEecCCCccceecccCCcceEEEEEeCCCCEEEee---cCC-CeEEEEECCCCeeeeeeecCCCCeeeEEEccCCCEE
Q 042146           82 IRLWDVPTATSLKTLIGHTNYVFCINFNPQSNRIVSD---TFN-ETIRIWDIKTGKCLKVLPAHSDPVTAIDFNRDGTMI  157 (262)
Q Consensus        82 i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~---~~d-g~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l  157 (262)
                      +.+-|.. +.....+......+..-+|+|++..++-.   ... ..+.++|+.+++...... ..+.-..-+|+|||+.|
T Consensus       175 l~~~D~d-g~~~~~l~~~~~~~~~p~ws~~~~~~~y~~f~~~~~~~i~~~~l~~g~~~~i~~-~~g~~~~P~fspDG~~l  252 (425)
T COG0823         175 LALGDYD-GYNQQKLTDSGSLILTPAWSPDGKKLAYVSFELGGCPRIYYLDLNTGKRPVILN-FNGNNGAPAFSPDGSKL  252 (425)
T ss_pred             EEEEccC-CcceeEecccCcceeccccCcCCCceEEEEEecCCCceEEEEeccCCccceeec-cCCccCCccCCCCCCEE
Confidence            3344433 44444444445667777899988775432   222 469999999887655543 34444567899999876


Q ss_pred             EEE-eCCCe--EEEEeCCC-------------------CCccEEEEEcCC-C--eEEEEecCCCceeeEEeccCCceeEE
Q 042146          158 VTS-SYDGL--YRILDAST-------------------PNGKFILVGTLD-N--TLRLWNYSTRKILKTYSGYTNSKYCI  212 (262)
Q Consensus       158 ~~~-~~dg~--i~~~d~~~-------------------~~~~~l~~~~~d-g--~i~i~d~~~~~~~~~~~~~~~~~~~~  212 (262)
                      +.+ ..||.  |.++|+..                   |+|++++-.+.. |  .|.++|++.+.. ..+..        
T Consensus       253 ~f~~~rdg~~~iy~~dl~~~~~~~Lt~~~gi~~~Ps~spdG~~ivf~Sdr~G~p~I~~~~~~g~~~-~riT~--------  323 (425)
T COG0823         253 AFSSSRDGSPDIYLMDLDGKNLPRLTNGFGINTSPSWSPDGSKIVFTSDRGGRPQIYLYDLEGSQV-TRLTF--------  323 (425)
T ss_pred             EEEECCCCCccEEEEcCCCCcceecccCCccccCccCCCCCCEEEEEeCCCCCcceEEECCCCCce-eEeec--------
Confidence            655 45665  55556554                   788877766533 3  466667765554 22222        


Q ss_pred             EEEEecCCCeeEEccccceEEEEEcCCCCeEEEee
Q 042146          213 SSTFSVTNGKYIVSHRDPVISVASHPAKNIIASGA  247 (262)
Q Consensus       213 ~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~  247 (262)
                                    ....-..-.|+|+|++++..+
T Consensus       324 --------------~~~~~~~p~~SpdG~~i~~~~  344 (425)
T COG0823         324 --------------SGGGNSNPVWSPDGDKIVFES  344 (425)
T ss_pred             --------------cCCCCcCccCCCCCCEEEEEe
Confidence                          111222667999999888776

>KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport]

Probab=97.70  E-value=0.0032  Score=55.10  Aligned_cols=67  Identities=25%  Similarity=0.460  Sum_probs=55.8

Q ss_pred             CCcceEEEEEeCCCCEEEeecCCCeEEEEECCCCeeeeeeecCCCCeeeEEEc---cCCCEEEEEeCCCe
Q 042146           99 HTNYVFCINFNPQSNRIVSDTFNETIRIWDIKTGKCLKVLPAHSDPVTAIDFN---RDGTMIVTSSYDGL  165 (262)
Q Consensus        99 ~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~---~~~~~l~~~~~dg~  165 (262)
                      ..++|++++|+.+|..++.|-.+|.|.+||...++.++.+..|..+.+.+-+.   .++..++++..-|.
T Consensus       129 v~~~Vtsvafn~dg~~l~~G~~~G~V~v~D~~~~k~l~~i~e~~ap~t~vi~v~~t~~nS~llt~D~~Gs  198 (1206)
T KOG2079|consen  129 VQGPVTSVAFNQDGSLLLAGLGDGHVTVWDMHRAKILKVITEHGAPVTGVIFVGRTSQNSKLLTSDTGGS  198 (1206)
T ss_pred             cCCcceeeEecCCCceeccccCCCcEEEEEccCCcceeeeeecCCccceEEEEEEeCCCcEEEEccCCCc
Confidence            45789999999999999999999999999999999999888777766665443   35557888877775

>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=97.70  E-value=0.0061  Score=48.58  Aligned_cols=88  Identities=13%  Similarity=0.138  Sum_probs=56.7

Q ss_pred             eEEEEecCCCccceecccCCcceEEEEEeCCCCEEEeecCCCeEEEEECCCCeeeeeeecC-----------------CC
Q 042146           81 TIRLWDVPTATSLKTLIGHTNYVFCINFNPQSNRIVSDTFNETIRIWDIKTGKCLKVLPAH-----------------SD  143 (262)
Q Consensus        81 ~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~-----------------~~  143 (262)
                      .+.++|+++++....... ...+....|+|+|+.++... ++.|.++++.++...+.-...                 -+
T Consensus        24 ~y~i~d~~~~~~~~l~~~-~~~~~~~~~sP~g~~~~~v~-~~nly~~~~~~~~~~~lT~dg~~~i~nG~~dwvyeEEv~~  101 (353)
T PF00930_consen   24 DYYIYDIETGEITPLTPP-PPKLQDAKWSPDGKYIAFVR-DNNLYLRDLATGQETQLTTDGEPGIYNGVPDWVYEEEVFD  101 (353)
T ss_dssp             EEEEEETTTTEEEESS-E-ETTBSEEEE-SSSTEEEEEE-TTEEEEESSTTSEEEESES--TTTEEESB--HHHHHHTSS
T ss_pred             eEEEEecCCCceEECcCC-ccccccceeecCCCeeEEEe-cCceEEEECCCCCeEEeccccceeEEcCccceeccccccc
Confidence            578889988654443332 56788999999999998876 578999998777543322111                 11


Q ss_pred             CeeeEEEccCCCEEEEEeCC-CeEEEEe
Q 042146          144 PVTAIDFNRDGTMIVTSSYD-GLYRILD  170 (262)
Q Consensus       144 ~v~~~~~~~~~~~l~~~~~d-g~i~~~d  170 (262)
                      .-..+.||||+++|+....| ..|..+.
T Consensus       102 ~~~~~~WSpd~~~la~~~~d~~~v~~~~  129 (353)
T PF00930_consen  102 RRSAVWWSPDSKYLAFLRFDEREVPEYP  129 (353)
T ss_dssp             SSBSEEE-TTSSEEEEEEEE-TTS-EEE
T ss_pred             cccceEECCCCCEEEEEEECCcCCceEE
Confidence            23678999999998877643 3444433

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....

>PRK13616 lipoprotein LpqB; Provisional

Probab=97.70  E-value=0.01  Score=50.39  Aligned_cols=56  Identities=7%  Similarity=0.109  Sum_probs=35.8

Q ss_pred             eEEEEEeCCCCEEEeecCC------------CeEEEEECCCCeeeeeeecCCCCeeeEEEccCCCEEEEEe
Q 042146          103 VFCINFNPQSNRIVSDTFN------------ETIRIWDIKTGKCLKVLPAHSDPVTAIDFNRDGTMIVTSS  161 (262)
Q Consensus       103 v~~~~~~~~~~~l~~~~~d------------g~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~  161 (262)
                      .+.-.|+|+|+.+++....            +.+.+.++..+....   ...+.|..+.|||||..++...
T Consensus       399 ~t~PsWspDG~~lw~v~dg~~~~~v~~~~~~gql~~~~vd~ge~~~---~~~g~Issl~wSpDG~RiA~i~  466 (591)
T PRK13616        399 LTRPSWSLDADAVWVVVDGNTVVRVIRDPATGQLARTPVDASAVAS---RVPGPISELQLSRDGVRAAMII  466 (591)
T ss_pred             CCCceECCCCCceEEEecCcceEEEeccCCCceEEEEeccCchhhh---ccCCCcCeEEECCCCCEEEEEE
Confidence            6677899998877665432            233333443333221   2356799999999999887654

>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]

Probab=97.63  E-value=0.0084  Score=44.28  Aligned_cols=90  Identities=16%  Similarity=0.153  Sum_probs=71.6

Q ss_pred             CCEEEeecCCCeEEEEECCCCeeeeeeecCCCCeeeEEEccCCCEEEEEeCCCeEEEEeCCC------------------
Q 042146          112 SNRIVSDTFNETIRIWDIKTGKCLKVLPAHSDPVTAIDFNRDGTMIVTSSYDGLYRILDAST------------------  173 (262)
Q Consensus       112 ~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~d~~~------------------  173 (262)
                      ..+++.|+..+.+.--|..+|+...+.. -...+.+-+.- -|+.++.|+..|.+++.+..+                  
T Consensus        23 kT~v~igSHs~~~~avd~~sG~~~We~i-lg~RiE~sa~v-vgdfVV~GCy~g~lYfl~~~tGs~~w~f~~~~~vk~~a~  100 (354)
T KOG4649|consen   23 KTLVVIGSHSGIVIAVDPQSGNLIWEAI-LGVRIECSAIV-VGDFVVLGCYSGGLYFLCVKTGSQIWNFVILETVKVRAQ  100 (354)
T ss_pred             ceEEEEecCCceEEEecCCCCcEEeehh-hCceeeeeeEE-ECCEEEEEEccCcEEEEEecchhheeeeeehhhhccceE
Confidence            4678889999999999999998877643 23333332222 467899999999999988776                  


Q ss_pred             --CCccEEEEEcCCCeEEEEecCCCceeeEEe
Q 042146          174 --PNGKFILVGTLDNTLRLWNYSTRKILKTYS  203 (262)
Q Consensus       174 --~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~  203 (262)
                        +++..+..|+.|+..+..|.++..++...+
T Consensus       101 ~d~~~glIycgshd~~~yalD~~~~~cVyksk  132 (354)
T KOG4649|consen  101 CDFDGGLIYCGSHDGNFYALDPKTYGCVYKSK  132 (354)
T ss_pred             EcCCCceEEEecCCCcEEEecccccceEEecc
Confidence              789999999999999999999988887755

>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases

Probab=97.60  E-value=0.032  Score=46.63  Aligned_cols=169  Identities=17%  Similarity=0.178  Sum_probs=93.5

Q ss_pred             CeEEEecCCCeEEEeecCCCCCCCC-CCCCC---------CccccCCcccc----------ccceeEEEEecCCCcccee
Q 042146           36 RLLTSSSAEKTLLTYSLSSISNFDS-TPPSP---------LQKFTGHEQGI----------SDLATIRLWDVPTATSLKT   95 (262)
Q Consensus        36 ~~l~s~~~d~~i~iw~~~~~~~~~~-~~~~~---------~~~~~~~~~~v----------~~~~~i~v~d~~~~~~~~~   95 (262)
                      ..++.++.++.|.-+|.++.+..-. .....         ...+....--+          ...+.+..+|..+++.+..
T Consensus       111 ~~V~v~~~~g~v~AlD~~TG~~~W~~~~~~~~~~~~~i~ssP~v~~~~v~vg~~~~~~~~~~~~g~v~alD~~TG~~~W~  190 (488)
T cd00216         111 RKVFFGTFDGRLVALDAETGKQVWKFGNNDQVPPGYTMTGAPTIVKKLVIIGSSGAEFFACGVRGALRAYDVETGKLLWR  190 (488)
T ss_pred             CeEEEecCCCeEEEEECCCCCEeeeecCCCCcCcceEecCCCEEECCEEEEeccccccccCCCCcEEEEEECCCCceeeE
Confidence            5677888899999999876543211 11000         00000000000          0123678889888887776


Q ss_pred             cccCCc--------------------ce-EEEEEeCCCCEEEeecCCC------------------eEEEEECCCCeeee
Q 042146           96 LIGHTN--------------------YV-FCINFNPQSNRIVSDTFNE------------------TIRIWDIKTGKCLK  136 (262)
Q Consensus        96 ~~~~~~--------------------~v-~~~~~~~~~~~l~~~~~dg------------------~i~vwd~~~~~~~~  136 (262)
                      +.....                    .+ ...++.+.+..++.++.++                  .|.-+|+++++.+.
T Consensus       191 ~~~~~~~~~~~~~~~~~~~~~~~~g~~vw~~pa~d~~~g~V~vg~~~g~~~~~~~~~~~~~~~~~~~l~Ald~~tG~~~W  270 (488)
T cd00216         191 FYTTEPDPNAFPTWGPDRQMWGPGGGTSWASPTYDPKTNLVYVGTGNGSPWNWGGRRTPGDNLYTDSIVALDADTGKVKW  270 (488)
T ss_pred             eeccCCCcCCCCCCCCCcceecCCCCCccCCeeEeCCCCEEEEECCCCCCCccCCccCCCCCCceeeEEEEcCCCCCEEE
Confidence            543211                    01 1244555567788777665                  79999999999988


Q ss_pred             eeecCCCCee------eEEEc----cCCC---EEEEEeCCCeEEEEeCCC---------------CCccEEEEEc-----
Q 042146          137 VLPAHSDPVT------AIDFN----RDGT---MIVTSSYDGLYRILDAST---------------PNGKFILVGT-----  183 (262)
Q Consensus       137 ~~~~~~~~v~------~~~~~----~~~~---~l~~~~~dg~i~~~d~~~---------------~~~~~l~~~~-----  183 (262)
                      .++.-.....      ...+.    -++.   .++.++.+|.+..+|.++               .+...++.+.     
T Consensus       271 ~~~~~~~~~~~~~~~s~p~~~~~~~~~g~~~~~V~~g~~~G~l~ald~~tG~~~W~~~~~~~~~~~~~~~vyv~~~~~~~  350 (488)
T cd00216         271 FYQTTPHDLWDYDGPNQPSLADIKPKDGKPVPAIVHAPKNGFFYVLDRTTGKLISARPEVEQPMAYDPGLVYLGAFHIPL  350 (488)
T ss_pred             EeeCCCCCCcccccCCCCeEEeccccCCCeeEEEEEECCCceEEEEECCCCcEeeEeEeeccccccCCceEEEccccccc
Confidence            8653111111      01111    1232   567777788888777765               1113333322     


Q ss_pred             -------------CCCeEEEEecCCCceeeEEec
Q 042146          184 -------------LDNTLRLWNYSTRKILKTYSG  204 (262)
Q Consensus       184 -------------~dg~i~i~d~~~~~~~~~~~~  204 (262)
                                   .+|.+.-.|+.+|+.+.+...
T Consensus       351 ~~~~~~~~~~~~~~~G~l~AlD~~tG~~~W~~~~  384 (488)
T cd00216         351 GLPPQKKKRCKKPGKGGLAALDPKTGKVVWEKRE  384 (488)
T ss_pred             cCcccccCCCCCCCceEEEEEeCCCCcEeeEeeC
Confidence                         356777778888877766653

The alignment model contains an 8-bladed beta-propeller.

>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []

Probab=97.55  E-value=0.013  Score=43.83  Aligned_cols=78  Identities=17%  Similarity=0.270  Sum_probs=52.3

Q ss_pred             ecccCCcceEEEEEeCCCC-EEEeecCCCeEEEEECCCCeeeeeeecC-CCCeeeEEEccCCCEEEEEeCCCeEEEEeCC
Q 042146           95 TLIGHTNYVFCINFNPQSN-RIVSDTFNETIRIWDIKTGKCLKVLPAH-SDPVTAIDFNRDGTMIVTSSYDGLYRILDAS  172 (262)
Q Consensus        95 ~~~~~~~~v~~~~~~~~~~-~l~~~~~dg~i~vwd~~~~~~~~~~~~~-~~~v~~~~~~~~~~~l~~~~~dg~i~~~d~~  172 (262)
                      .+.+-...+..|+|+|+.+ ++++....+.|..++. +++.++.+.-. .+..-.|++..++.++++.-.++.+.++++.
T Consensus        16 ~l~g~~~e~SGLTy~pd~~tLfaV~d~~~~i~els~-~G~vlr~i~l~g~~D~EgI~y~g~~~~vl~~Er~~~L~~~~~~   94 (248)
T PF06977_consen   16 PLPGILDELSGLTYNPDTGTLFAVQDEPGEIYELSL-DGKVLRRIPLDGFGDYEGITYLGNGRYVLSEERDQRLYIFTID   94 (248)
T ss_dssp             E-TT--S-EEEEEEETTTTEEEEEETTTTEEEEEET-T--EEEEEE-SS-SSEEEEEE-STTEEEEEETTTTEEEEEEE-
T ss_pred             ECCCccCCccccEEcCCCCeEEEEECCCCEEEEEcC-CCCEEEEEeCCCCCCceeEEEECCCEEEEEEcCCCcEEEEEEe
Confidence            4445556699999999655 6677778889988996 47777776543 3567889998777777766678999999884


Q ss_pred             C
Q 042146          173 T  173 (262)
Q Consensus       173 ~  173 (262)
                      .
T Consensus        95 ~   95 (248)
T PF06977_consen   95 D   95 (248)
T ss_dssp             -
T ss_pred             c
Confidence            3

Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.

>COG3391 Uncharacterized conserved protein [Function unknown]

Probab=97.50  E-value=0.035  Score=44.78  Aligned_cols=91  Identities=21%  Similarity=0.316  Sum_probs=63.8

Q ss_pred             eEEEEecCCCccceecccCCcceEEEEEeCCCCEEEeecC---CCeEEEEECCCCeeeeeeecCCCCeeeEEEccCCCEE
Q 042146           81 TIRLWDVPTATSLKTLIGHTNYVFCINFNPQSNRIVSDTF---NETIRIWDIKTGKCLKVLPAHSDPVTAIDFNRDGTMI  157 (262)
Q Consensus        81 ~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~---dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l  157 (262)
                      .|.+.|..+.........- .....++++|+++.++.+..   ++++.+.|..+++..........+ ..++++|+|..+
T Consensus        97 ~v~vid~~~~~~~~~~~vG-~~P~~~~~~~~~~~vYV~n~~~~~~~vsvid~~t~~~~~~~~vG~~P-~~~a~~p~g~~v  174 (381)
T COG3391          97 TVSVIDTATNTVLGSIPVG-LGPVGLAVDPDGKYVYVANAGNGNNTVSVIDAATNKVTATIPVGNTP-TGVAVDPDGNKV  174 (381)
T ss_pred             eEEEEcCcccceeeEeeec-cCCceEEECCCCCEEEEEecccCCceEEEEeCCCCeEEEEEecCCCc-ceEEECCCCCeE
Confidence            3455554444444433221 15567899999987776554   689999999999888876554455 899999999966


Q ss_pred             EEEe-CCCeEEEEeCCC
Q 042146          158 VTSS-YDGLYRILDAST  173 (262)
Q Consensus       158 ~~~~-~dg~i~~~d~~~  173 (262)
                      +.+. .++.|.++|...
T Consensus       175 yv~~~~~~~v~vi~~~~  191 (381)
T COG3391         175 YVTNSDDNTVSVIDTSG  191 (381)
T ss_pred             EEEecCCCeEEEEeCCC
Confidence            6555 788899888554

>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain

Probab=97.49  E-value=0.00045  Score=36.82  Aligned_cols=33  Identities=18%  Similarity=0.271  Sum_probs=29.1

Q ss_pred             cccceEEEEEcCCCCeEEEeeecCCCcEEEEeecc
Q 042146          227 HRDPVISVASHPAKNIIASGALDNDRTMKIWTQEK  261 (262)
Q Consensus       227 ~~~~v~~~~~~p~~~~l~~~~~d~d~~i~iw~~~~  261 (262)
                      ....|..++|+|...+||.+.  .+|.|.+++++.
T Consensus        10 l~~~v~~~~w~P~mdLiA~~t--~~g~v~v~Rl~~   42 (47)
T PF12894_consen   10 LPSRVSCMSWCPTMDLIALGT--EDGEVLVYRLNW   42 (47)
T ss_pred             CCCcEEEEEECCCCCEEEEEE--CCCeEEEEECCC
Confidence            345799999999999999999  899999999853

>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain

Probab=97.45  E-value=0.00082  Score=35.84  Aligned_cols=31  Identities=19%  Similarity=0.319  Sum_probs=28.2

Q ss_pred             cCceEEEEEccCCCeEEEecCCCeEEEeecC
Q 042146           23 LRAVSYVKFSHDGRLLTSSSAEKTLLTYSLS   53 (262)
Q Consensus        23 ~~~v~~~~~~~~~~~l~s~~~d~~i~iw~~~   53 (262)
                      ..+|.+++|+|...+||.++.+|.|.++.+.
T Consensus        11 ~~~v~~~~w~P~mdLiA~~t~~g~v~v~Rl~   41 (47)
T PF12894_consen   11 PSRVSCMSWCPTMDLIALGTEDGEVLVYRLN   41 (47)
T ss_pred             CCcEEEEEECCCCCEEEEEECCCeEEEEECC
Confidence            4569999999999999999999999999773

>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=97.40  E-value=0.027  Score=44.90  Aligned_cols=92  Identities=16%  Similarity=0.227  Sum_probs=51.1

Q ss_pred             eEEEEecCCCccce-ec----ccCCcceEEEEEeCCCCEEEe--ecCC---CeEEEEECCCCeeeeeeec-CCC---Cee
Q 042146           81 TIRLWDVPTATSLK-TL----IGHTNYVFCINFNPQSNRIVS--DTFN---ETIRIWDIKTGKCLKVLPA-HSD---PVT  146 (262)
Q Consensus        81 ~i~v~d~~~~~~~~-~~----~~~~~~v~~~~~~~~~~~l~~--~~~d---g~i~vwd~~~~~~~~~~~~-~~~---~v~  146 (262)
                      .+.++|+.+++... ..    ......+..+.|.++++.|+.  ...+   -.+.++|..++........ ...   .-.
T Consensus       159 ~l~v~~~~~~~~~~~~~~~~~~~~~~yl~~v~W~~d~~~l~~~~~nR~q~~~~l~~~d~~tg~~~~~~~e~~~~Wv~~~~  238 (353)
T PF00930_consen  159 SLFVVDLASGKTTELDPPNSLNPQDYYLTRVGWSPDGKRLWVQWLNRDQNRLDLVLCDASTGETRVVLEETSDGWVDVYD  238 (353)
T ss_dssp             EEEEEESSSTCCCEE---HHHHTSSEEEEEEEEEETTEEEEEEEEETTSTEEEEEEEEECTTTCEEEEEEESSSSSSSSS
T ss_pred             EEEEEECCCCcEEEeeeccccCCCccCcccceecCCCcEEEEEEcccCCCEEEEEEEECCCCceeEEEEecCCcceeeec
Confidence            77888988776532 11    234567899999999884433  2222   2477778877654333322 122   223


Q ss_pred             eEEEc-cCCC-EEEEEeCCCeEEEEeCC
Q 042146          147 AIDFN-RDGT-MIVTSSYDGLYRILDAS  172 (262)
Q Consensus       147 ~~~~~-~~~~-~l~~~~~dg~i~~~d~~  172 (262)
                      ...+. +++. ++.....+|.-.||-+.
T Consensus       239 ~~~~~~~~~~~~l~~s~~~G~~hly~~~  266 (353)
T PF00930_consen  239 PPHFLGPDGNEFLWISERDGYRHLYLYD  266 (353)
T ss_dssp             EEEE-TTTSSEEEEEEETTSSEEEEEEE
T ss_pred             ccccccCCCCEEEEEEEcCCCcEEEEEc
Confidence            45554 5554 55555577755544433

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....

>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit

Probab=97.39  E-value=0.031  Score=43.90  Aligned_cols=91  Identities=18%  Similarity=0.172  Sum_probs=58.8

Q ss_pred             CCcceEEEEEeCCCCEEEeecCCCeEEEEECCCCe-eeeeeec-CCCCeeeEEEccCCCEEEEEeCCCeEEEEeCCC---
Q 042146           99 HTNYVFCINFNPQSNRIVSDTFNETIRIWDIKTGK-CLKVLPA-HSDPVTAIDFNRDGTMIVTSSYDGLYRILDAST---  173 (262)
Q Consensus        99 ~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~-~~~~~~~-~~~~v~~~~~~~~~~~l~~~~~dg~i~~~d~~~---  173 (262)
                      ..++|++++-. .+. ++++. .+.|.+|++...+ ....-.. ....+.++..  .+++++.|.....+.++....   
T Consensus        87 ~~g~V~ai~~~-~~~-lv~~~-g~~l~v~~l~~~~~l~~~~~~~~~~~i~sl~~--~~~~I~vgD~~~sv~~~~~~~~~~  161 (321)
T PF03178_consen   87 VKGPVTAICSF-NGR-LVVAV-GNKLYVYDLDNSKTLLKKAFYDSPFYITSLSV--FKNYILVGDAMKSVSLLRYDEENN  161 (321)
T ss_dssp             ESS-EEEEEEE-TTE-EEEEE-TTEEEEEEEETTSSEEEEEEE-BSSSEEEEEE--ETTEEEEEESSSSEEEEEEETTTE
T ss_pred             ecCcceEhhhh-CCE-EEEee-cCEEEEEEccCcccchhhheecceEEEEEEec--cccEEEEEEcccCEEEEEEEccCC
Confidence            46788888877 344 44444 4799999998777 4333221 2224555544  466999999888877774332   


Q ss_pred             --------------------CCccEEEEEcCCCeEEEEecC
Q 042146          174 --------------------PNGKFILVGTLDNTLRLWNYS  194 (262)
Q Consensus       174 --------------------~~~~~l~~~~~dg~i~i~d~~  194 (262)
                                          .+++.++++..+|.+.++...
T Consensus       162 ~l~~va~d~~~~~v~~~~~l~d~~~~i~~D~~gnl~~l~~~  202 (321)
T PF03178_consen  162 KLILVARDYQPRWVTAAEFLVDEDTIIVGDKDGNLFVLRYN  202 (321)
T ss_dssp             -EEEEEEESS-BEEEEEEEE-SSSEEEEEETTSEEEEEEE-
T ss_pred             EEEEEEecCCCccEEEEEEecCCcEEEEEcCCCeEEEEEEC
Confidence                                355688888888988888765

CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....

>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=97.29  E-value=0.045  Score=41.21  Aligned_cols=123  Identities=18%  Similarity=0.306  Sum_probs=70.9

Q ss_pred             eEEEEecCCC-ccceecccCCcceEEEEEeCCCCEEEeecC------------------CCeEEEEECCCCeeeeee--e
Q 042146           81 TIRLWDVPTA-TSLKTLIGHTNYVFCINFNPQSNRIVSDTF------------------NETIRIWDIKTGKCLKVL--P  139 (262)
Q Consensus        81 ~i~v~d~~~~-~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~------------------dg~i~vwd~~~~~~~~~~--~  139 (262)
                      .|-|||.+.+ +.+.++..|.-.-..+.+.+||+.++.+..                  .-++.+.|..+++.+.+.  .
T Consensus       141 ViGvYd~r~~fqrvgE~~t~GiGpHev~lm~DGrtlvvanGGIethpdfgR~~lNldsMePSlvlld~atG~liekh~Lp  220 (366)
T COG3490         141 VIGVYDAREGFQRVGEFSTHGIGPHEVTLMADGRTLVVANGGIETHPDFGRTELNLDSMEPSLVLLDAATGNLIEKHTLP  220 (366)
T ss_pred             eEEEEecccccceecccccCCcCcceeEEecCCcEEEEeCCceecccccCccccchhhcCccEEEEeccccchhhhccCc
Confidence            4666666532 345567777777778899999999887642                  112333444444443322  1


Q ss_pred             --cCCCCeeeEEEccCCCEEEEEeCCC----------------eEEEEeCCC-----------------CCccEEEEEcC
Q 042146          140 --AHSDPVTAIDFNRDGTMIVTSSYDG----------------LYRILDAST-----------------PNGKFILVGTL  184 (262)
Q Consensus       140 --~~~~~v~~~~~~~~~~~l~~~~~dg----------------~i~~~d~~~-----------------~~~~~l~~~~~  184 (262)
                        .+...|..++..+||..++.+-..|                -+..+++..                 .++-..+++-.
T Consensus       221 ~~l~~lSiRHld~g~dgtvwfgcQy~G~~~d~ppLvg~~~~g~~l~~~~~pee~~~~~anYigsiA~n~~~glV~lTSP~  300 (366)
T COG3490         221 ASLRQLSIRHLDIGRDGTVWFGCQYRGPRNDLPPLVGHFRKGEPLEFLDLPEEQTAAFANYIGSIAANRRDGLVALTSPR  300 (366)
T ss_pred             hhhhhcceeeeeeCCCCcEEEEEEeeCCCccCCcceeeccCCCcCcccCCCHHHHHHHHhhhhheeecccCCeEEEecCC
Confidence              2334577788888877666554332                223333322                 23334444445


Q ss_pred             CCeEEEEecCCCceeeEEe
Q 042146          185 DNTLRLWNYSTRKILKTYS  203 (262)
Q Consensus       185 dg~i~i~d~~~~~~~~~~~  203 (262)
                      .....+||..+|..+..-.
T Consensus       301 GN~~vi~da~tG~vv~~a~  319 (366)
T COG3490         301 GNRAVIWDAATGAVVSEAA  319 (366)
T ss_pred             CCeEEEEEcCCCcEEeccc
Confidence            5567789999998876543

>PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea

Probab=97.23  E-value=0.032  Score=44.74  Aligned_cols=154  Identities=10%  Similarity=0.107  Sum_probs=72.1

Q ss_pred             EEEEeCCCCEEEeec------CCCeEEEEECCCCeeeeeeecC---CCCeeeEEEccCCCEEEEEeCCCeEEEEeCCCCC
Q 042146          105 CINFNPQSNRIVSDT------FNETIRIWDIKTGKCLKVLPAH---SDPVTAIDFNRDGTMIVTSSYDGLYRILDASTPN  175 (262)
Q Consensus       105 ~~~~~~~~~~l~~~~------~dg~i~vwd~~~~~~~~~~~~~---~~~v~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~  175 (262)
                      .+-.-|+|+.++++-      .-|-+.++|-++.+........   ...-..+-|.|..+.++++.-.. -..+.-- .+
T Consensus       134 T~Hclp~G~imIS~lGd~~G~g~Ggf~llD~~tf~v~g~We~~~~~~~~gYDfw~qpr~nvMiSSeWg~-P~~~~~G-f~  211 (461)
T PF05694_consen  134 TVHCLPDGRIMISALGDADGNGPGGFVLLDGETFEVKGRWEKDRGPQPFGYDFWYQPRHNVMISSEWGA-PSMFEKG-FN  211 (461)
T ss_dssp             EEEE-SS--EEEEEEEETTS-S--EEEEE-TTT--EEEE--SB-TT------EEEETTTTEEEE-B----HHHHTT----
T ss_pred             eeeecCCccEEEEeccCCCCCCCCcEEEEcCccccccceeccCCCCCCCCCCeEEcCCCCEEEEeccCC-hhhcccC-CC
Confidence            344557887777632      2346888888877766655432   23457788899888888875321 0011000 01


Q ss_pred             ccEEEEEcCCCeEEEEecCCCceeeEEeccCCce--eEEEEEEecCCCeeEEc---------------------------
Q 042146          176 GKFILVGTLDNTLRLWNYSTRKILKTYSGYTNSK--YCISSTFSVTNGKYIVS---------------------------  226 (262)
Q Consensus       176 ~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~---------------------------  226 (262)
                      ..-+..+--...+.+||+.+.+.++++.-.....  ..++.+..+....-+++                           
T Consensus       212 ~~d~~~~~yG~~l~vWD~~~r~~~Q~idLg~~g~~pLEvRflH~P~~~~gFvg~aLss~i~~~~k~~~g~W~a~kVi~ip  291 (461)
T PF05694_consen  212 PEDLEAGKYGHSLHVWDWSTRKLLQTIDLGEEGQMPLEVRFLHDPDANYGFVGCALSSSIWRFYKDDDGEWAAEKVIDIP  291 (461)
T ss_dssp             TTTHHHH-S--EEEEEETTTTEEEEEEES-TTEEEEEEEEE-SSTT--EEEEEEE--EEEEEEEE-ETTEEEEEEEEEE-
T ss_pred             hhHhhcccccCeEEEEECCCCcEeeEEecCCCCCceEEEEecCCCCccceEEEEeccceEEEEEEcCCCCeeeeEEEECC
Confidence            1112222233578889988888888776543332  22333333333222222                           


Q ss_pred             ------------------cccceEEEEEcCCCCeEEEeeecCCCcEEEEeecc
Q 042146          227 ------------------HRDPVISVASHPAKNIIASGALDNDRTMKIWTQEK  261 (262)
Q Consensus       227 ------------------~~~~v~~~~~~p~~~~l~~~~~d~d~~i~iw~~~~  261 (262)
                                        -..-|+.|..|.|.++|..+.| -+|.|+.||+..
T Consensus       292 ~~~v~~~~lp~ml~~~~~~P~LitDI~iSlDDrfLYvs~W-~~GdvrqYDISD  343 (461)
T PF05694_consen  292 AKKVEGWILPEMLKPFGAVPPLITDILISLDDRFLYVSNW-LHGDVRQYDISD  343 (461)
T ss_dssp             -EE--SS---GGGGGG-EE------EEE-TTS-EEEEEET-TTTEEEEEE-SS
T ss_pred             CcccCcccccccccccccCCCceEeEEEccCCCEEEEEcc-cCCcEEEEecCC
Confidence                              0234799999999999999998 599999999864

The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A.

>KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms]

Probab=97.23  E-value=0.031  Score=40.79  Aligned_cols=107  Identities=14%  Similarity=0.173  Sum_probs=68.6

Q ss_pred             EEEEEccCCCeE-EEecCCCeEEEeecC--CCCCCCCCCCCCCccccCCccccccceeEEEEecCCCccceecccCCcce
Q 042146           27 SYVKFSHDGRLL-TSSSAEKTLLTYSLS--SISNFDSTPPSPLQKFTGHEQGISDLATIRLWDVPTATSLKTLIGHTNYV  103 (262)
Q Consensus        27 ~~~~~~~~~~~l-~s~~~d~~i~iw~~~--~~~~~~~~~~~~~~~~~~~~~~v~~~~~i~v~d~~~~~~~~~~~~~~~~v  103 (262)
                      +.++|+.+.+.+ .+-+.+-.|.-||.+  +.....                     .=.++|++..++...+...    
T Consensus       161 Ngl~Wd~d~K~fY~iDsln~~V~a~dyd~~tG~~sn---------------------r~~i~dlrk~~~~e~~~PD----  215 (310)
T KOG4499|consen  161 NGLAWDSDAKKFYYIDSLNYEVDAYDYDCPTGDLSN---------------------RKVIFDLRKSQPFESLEPD----  215 (310)
T ss_pred             ccccccccCcEEEEEccCceEEeeeecCCCcccccC---------------------cceeEEeccCCCcCCCCCC----
Confidence            456676665543 444556677677643  211100                     0124566554433333222    


Q ss_pred             EEEEEeCCCCEEEeecCCCeEEEEECCCCeeeeeeecCCCCeeeEEEcc-CCCEEEE
Q 042146          104 FCINFNPQSNRIVSDTFNETIRIWDIKTGKCLKVLPAHSDPVTAIDFNR-DGTMIVT  159 (262)
Q Consensus       104 ~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~  159 (262)
                       .+++..+|++.++.-..++|...|+.+++.+.+++-....|++++|-- +-..|++
T Consensus       216 -Gm~ID~eG~L~Va~~ng~~V~~~dp~tGK~L~eiklPt~qitsccFgGkn~d~~yv  271 (310)
T KOG4499|consen  216 -GMTIDTEGNLYVATFNGGTVQKVDPTTGKILLEIKLPTPQITSCCFGGKNLDILYV  271 (310)
T ss_pred             -cceEccCCcEEEEEecCcEEEEECCCCCcEEEEEEcCCCceEEEEecCCCccEEEE
Confidence             344566899999999999999999999999999998899999999964 3334443

>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]

Probab=97.23  E-value=0.024  Score=44.01  Aligned_cols=128  Identities=16%  Similarity=0.195  Sum_probs=81.1

Q ss_pred             Cceeeecc-cccceecccCcCceEEEEEccCCCeEEEec-CCCeEEEeecCCCCCCCCCCCCCCccccCCccccccceeE
Q 042146            5 RSLESFRP-YTLTQTLNGHLRAVSYVKFSHDGRLLTSSS-AEKTLLTYSLSSISNFDSTPPSPLQKFTGHEQGISDLATI   82 (262)
Q Consensus         5 ~~i~~~~~-~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~-~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~i   82 (262)
                      |.++.+.+ ...++.+..|-..-+.|+||||++.|..+. ..+.|..|+++...   .                      
T Consensus       143 G~lyr~~p~g~~~~l~~~~~~~~NGla~SpDg~tly~aDT~~~~i~r~~~d~~~---g----------------------  197 (307)
T COG3386         143 GSLYRVDPDGGVVRLLDDDLTIPNGLAFSPDGKTLYVADTPANRIHRYDLDPAT---G----------------------  197 (307)
T ss_pred             ceEEEEcCCCCEEEeecCcEEecCceEECCCCCEEEEEeCCCCeEEEEecCccc---C----------------------
Confidence            34666663 456666666677778999999998776664 44777777664200   0                      


Q ss_pred             EEEecCCCccceecccCCcceEEEEEeCCCCEEEeecCCC-eEEEEECCCCeeeeeeecCCCCeeeEEEcc-CCCEEEEE
Q 042146           83 RLWDVPTATSLKTLIGHTNYVFCINFNPQSNRIVSDTFNE-TIRIWDIKTGKCLKVLPAHSDPVTAIDFNR-DGTMIVTS  160 (262)
Q Consensus        83 ~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg-~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~  160 (262)
                         .+.............+..-.++...+|.+.+++-.+| .|.+|+.. ++++..+..+...+++++|-- +.+.|++.
T Consensus       198 ---~~~~~~~~~~~~~~~G~PDG~~vDadG~lw~~a~~~g~~v~~~~pd-G~l~~~i~lP~~~~t~~~FgG~~~~~L~iT  273 (307)
T COG3386         198 ---PIGGRRGFVDFDEEPGLPDGMAVDADGNLWVAAVWGGGRVVRFNPD-GKLLGEIKLPVKRPTNPAFGGPDLNTLYIT  273 (307)
T ss_pred             ---ccCCcceEEEccCCCCCCCceEEeCCCCEEEecccCCceEEEECCC-CcEEEEEECCCCCCccceEeCCCcCEEEEE
Confidence               0001111112222345556788888999886555554 99999988 888888877767788888853 44544444


Q ss_pred             e
Q 042146          161 S  161 (262)
Q Consensus       161 ~  161 (262)
                      +
T Consensus       274 s  274 (307)
T COG3386         274 S  274 (307)
T ss_pred             e
Confidence            3

>PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase

Probab=97.02  E-value=0.084  Score=40.41  Aligned_cols=61  Identities=13%  Similarity=0.240  Sum_probs=43.7

Q ss_pred             CCCCEEEeecCCCeEEEEECCCCeeeeeeecCCCCeeeEEEccCCCEEEEEeCCCeEEEEeCCC
Q 042146          110 PQSNRIVSDTFNETIRIWDIKTGKCLKVLPAHSDPVTAIDFNRDGTMIVTSSYDGLYRILDAST  173 (262)
Q Consensus       110 ~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~d~~~  173 (262)
                      ..++.|+.|+++| +.+++.........+. +..+|..+...|+-+.|++-+ |+.+.++++..
T Consensus         5 ~~~~~L~vGt~~G-l~~~~~~~~~~~~~i~-~~~~I~ql~vl~~~~~llvLs-d~~l~~~~L~~   65 (275)
T PF00780_consen    5 SWGDRLLVGTEDG-LYVYDLSDPSKPTRIL-KLSSITQLSVLPELNLLLVLS-DGQLYVYDLDS   65 (275)
T ss_pred             cCCCEEEEEECCC-EEEEEecCCccceeEe-ecceEEEEEEecccCEEEEEc-CCccEEEEchh
Confidence            3678899999998 8999983332222222 344499999999777766655 59999999766

These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity

>PRK13616 lipoprotein LpqB; Provisional

Probab=96.95  E-value=0.04  Score=46.90  Aligned_cols=115  Identities=5%  Similarity=0.007  Sum_probs=72.1

Q ss_pred             cceEEEEEeCCCCEEEeec------CCC--eEEEEECCCCeeeeeeecCCCCeeeEEEccCCCEEEEEeCCCeEEEEeCC
Q 042146          101 NYVFCINFNPQSNRIVSDT------FNE--TIRIWDIKTGKCLKVLPAHSDPVTAIDFNRDGTMIVTSSYDGLYRILDAS  172 (262)
Q Consensus       101 ~~v~~~~~~~~~~~l~~~~------~dg--~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~d~~  172 (262)
                      ..+...+++|+|+.++..-      .|.  .|.+++.. +.. ..+.. ....+.-.|+|+|..+++......+.     
T Consensus       350 ~~vsspaiSpdG~~vA~v~~~~~~~~d~~s~Lwv~~~g-g~~-~~lt~-g~~~t~PsWspDG~~lw~v~dg~~~~-----  421 (591)
T PRK13616        350 GNITSAALSRSGRQVAAVVTLGRGAPDPASSLWVGPLG-GVA-VQVLE-GHSLTRPSWSLDADAVWVVVDGNTVV-----  421 (591)
T ss_pred             cCcccceECCCCCEEEEEEeecCCCCCcceEEEEEeCC-Ccc-eeeec-CCCCCCceECCCCCceEEEecCcceE-----
Confidence            4678899999999876544      233  56666642 222 22322 22378899999999888876432221     


Q ss_pred             CCCccEEEEEcCCCeEEEEecCCCceeeEEeccCCceeEEEEEEecCCCeeEEccccceEEEEEcCCCCeEEEeeecCCC
Q 042146          173 TPNGKFILVGTLDNTLRLWNYSTRKILKTYSGYTNSKYCISSTFSVTNGKYIVSHRDPVISVASHPAKNIIASGALDNDR  252 (262)
Q Consensus       173 ~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~d~d~  252 (262)
                           ++......+.+.+.++..++...  .                       ..+.|..+.|||||..++...   ++
T Consensus       422 -----~v~~~~~~gql~~~~vd~ge~~~--~-----------------------~~g~Issl~wSpDG~RiA~i~---~g  468 (591)
T PRK13616        422 -----RVIRDPATGQLARTPVDASAVAS--R-----------------------VPGPISELQLSRDGVRAAMII---GG  468 (591)
T ss_pred             -----EEeccCCCceEEEEeccCchhhh--c-----------------------cCCCcCeEEECCCCCEEEEEE---CC
Confidence                 12222234566666776655543  1                       455799999999999888775   35


Q ss_pred             cEEE
Q 042146          253 TMKI  256 (262)
Q Consensus       253 ~i~i  256 (262)
                      .|.+
T Consensus       469 ~v~V  472 (591)
T PRK13616        469 KVYL  472 (591)
T ss_pred             EEEE
Confidence            6655

>KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport]

Probab=96.86  E-value=0.07  Score=43.63  Aligned_cols=110  Identities=15%  Similarity=0.218  Sum_probs=73.2

Q ss_pred             eEEEEecCCCccceecccCCcceEEEEEeCCCC-------EEEeecCCCeEEEEECCCCee--eeeeecC----CCCeee
Q 042146           81 TIRLWDVPTATSLKTLIGHTNYVFCINFNPQSN-------RIVSDTFNETIRIWDIKTGKC--LKVLPAH----SDPVTA  147 (262)
Q Consensus        81 ~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~-------~l~~~~~dg~i~vwd~~~~~~--~~~~~~~----~~~v~~  147 (262)
                      .++-.|++.|+.+.+++-+.. |+-+.+.|+.+       .-+.|-.+..|.-||+|-...  +...+.|    .....|
T Consensus       357 ~l~klDIE~GKIVeEWk~~~d-i~mv~~t~d~K~~Ql~~e~TlvGLs~n~vfriDpRv~~~~kl~~~q~kqy~~k~nFsc  435 (644)
T KOG2395|consen  357 KLYKLDIERGKIVEEWKFEDD-INMVDITPDFKFAQLTSEQTLVGLSDNSVFRIDPRVQGKNKLAVVQSKQYSTKNNFSC  435 (644)
T ss_pred             cceeeecccceeeeEeeccCC-cceeeccCCcchhcccccccEEeecCCceEEecccccCcceeeeeeccccccccccce
Confidence            677889999999988887666 77777877543       234566788999999984322  2222222    223455


Q ss_pred             EEEccCCCEEEEEeCCCeEEEEeCCC--------------------CCccEEEEEcCCCeEEEEec
Q 042146          148 IDFNRDGTMIVTSSYDGLYRILDAST--------------------PNGKFILVGTLDNTLRLWNY  193 (262)
Q Consensus       148 ~~~~~~~~~l~~~~~dg~i~~~d~~~--------------------~~~~~l~~~~~dg~i~i~d~  193 (262)
                      .+-..+ -++++|+.+|.|++||-..                    .+|+++++.+ +..+.+.++
T Consensus       436 ~aTT~s-G~IvvgS~~GdIRLYdri~~~AKTAlPgLG~~I~hVdvtadGKwil~Tc-~tyLlLi~t  499 (644)
T KOG2395|consen  436 FATTES-GYIVVGSLKGDIRLYDRIGRRAKTALPGLGDAIKHVDVTADGKWILATC-KTYLLLIDT  499 (644)
T ss_pred             eeecCC-ceEEEeecCCcEEeehhhhhhhhhcccccCCceeeEEeeccCcEEEEec-ccEEEEEEE
Confidence            554444 3899999999999999633                    5788777665 445555554

>KOG1916 consensus Nuclear protein, contains WD40 repeats [General function prediction only]

Probab=96.85  E-value=0.0012  Score=56.72  Aligned_cols=91  Identities=18%  Similarity=0.312  Sum_probs=51.2

Q ss_pred             EEEEEeC---CCCEEEeecCCCeEEEEECCCCeeeeeeecCCCCeeeEEEccCCCEEEEEeCCCeEEEEeCCCCCccEEE
Q 042146          104 FCINFNP---QSNRIVSDTFNETIRIWDIKTGKCLKVLPAHSDPVTAIDFNRDGTMIVTSSYDGLYRILDASTPNGKFIL  180 (262)
Q Consensus       104 ~~~~~~~---~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~l~  180 (262)
                      .-+.|.|   +.-++..+-.++.|++....+.. ...+..|...+..++|-..|-.++.+           -+|||..++
T Consensus       184 ~~V~wcp~~~~~~~ic~~~~~~~i~lL~~~ra~-~~l~rsHs~~~~d~a~~~~g~~~l~~-----------lSpDGtv~a  251 (1283)
T KOG1916|consen  184 QLVSWCPIAVNKVYICYGLKGGEIRLLNINRAL-RSLFRSHSQRVTDMAFFAEGVLKLAS-----------LSPDGTVFA  251 (1283)
T ss_pred             ceeeecccccccceeeeccCCCceeEeeechHH-HHHHHhcCCCcccHHHHhhchhhhee-----------eCCCCcEEE
Confidence            4444544   56677788888898887765433 24556688888777765544322222           114444555


Q ss_pred             EEcCCCeEEEEec-----CCCceeeEEeccC
Q 042146          181 VGTLDNTLRLWNY-----STRKILKTYSGYT  206 (262)
Q Consensus       181 ~~~~dg~i~i~d~-----~~~~~~~~~~~~~  206 (262)
                      +++.||.+++|.+     ..-+++...+.|+
T Consensus       252 ~a~~dG~v~f~Qiyi~g~~~~rclhewkphd  282 (1283)
T KOG1916|consen  252 WAISDGSVGFYQIYITGKIVHRCLHEWKPHD  282 (1283)
T ss_pred             EeecCCccceeeeeeeccccHhhhhccCCCC
Confidence            5555665555543     3334445555443

>PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus

Probab=96.85  E-value=0.19  Score=40.75  Aligned_cols=41  Identities=22%  Similarity=0.237  Sum_probs=32.8

Q ss_pred             CCCEEEeecCCCeEEEEECCCCeeeeeeecCCCCeeeEEEcc
Q 042146          111 QSNRIVSDTFNETIRIWDIKTGKCLKVLPAHSDPVTAIDFNR  152 (262)
Q Consensus       111 ~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~  152 (262)
                      |...+++|..+|.|++|.. +|..+..-..|..+|..+.+..
T Consensus        78 dw~~I~VG~ssG~vrfyte-~G~LL~~Q~~h~~pV~~ik~~~  118 (415)
T PF14655_consen   78 DWTCIAVGTSSGYVRFYTE-NGVLLLSQLLHEEPVLKIKCRS  118 (415)
T ss_pred             CcEEEEEEecccEEEEEec-cchHHHHHhcCccceEEEEecc
Confidence            4567999999999999984 6777666667888888888754

>COG4590 ABC-type uncharacterized transport system, permease component [General function prediction only]

Probab=96.81  E-value=0.043  Score=44.07  Aligned_cols=139  Identities=16%  Similarity=0.112  Sum_probs=76.4

Q ss_pred             cccCCcceEEEEEeCCCCEEEeecCCCeEEEEECCCCeee-eee-ecCCC----Cee-eEEEccCCCEEEEEeCCCeEEE
Q 042146           96 LIGHTNYVFCINFNPQSNRIVSDTFNETIRIWDIKTGKCL-KVL-PAHSD----PVT-AIDFNRDGTMIVTSSYDGLYRI  168 (262)
Q Consensus        96 ~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~-~~~-~~~~~----~v~-~~~~~~~~~~l~~~~~dg~i~~  168 (262)
                      +......+..+-..|||+.++.-+. ..+.++++.+.... +++ ....+    .|+ ++..-..|.-+.+++.||.|.-
T Consensus       216 L~~~~~~v~qllL~Pdg~~LYv~~g-~~~~v~~L~~r~l~~rkl~~dspg~~~~~Vte~l~lL~Gg~SLLv~~~dG~vsQ  294 (733)
T COG4590         216 LSVPFSDVSQLLLTPDGKTLYVRTG-SELVVALLDKRSLQIRKLVDDSPGDSRHQVTEQLYLLSGGFSLLVVHEDGLVSQ  294 (733)
T ss_pred             cCCCccchHhhEECCCCCEEEEecC-CeEEEEeecccccchhhhhhcCCCchHHHHHHHHHHHhCceeEEEEcCCCceee
Confidence            4445567888889999999887665 67888888654321 111 11111    122 1222234566777888887776


Q ss_pred             E-eCCCCC-------------------------ccEEEEEcCCCeEEEEecCCCceeeEEeccCCceeEEEEEEecCCCe
Q 042146          169 L-DASTPN-------------------------GKFILVGTLDNTLRLWNYSTRKILKTYSGYTNSKYCISSTFSVTNGK  222 (262)
Q Consensus       169 ~-d~~~~~-------------------------~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  222 (262)
                      | |.+..+                         .+-+++-..+|++.++....-+.+-.-                    
T Consensus       295 WFdvr~~~~p~l~h~R~f~l~pa~~~~l~pe~~rkgF~~l~~~G~L~~f~st~~~~lL~~--------------------  354 (733)
T COG4590         295 WFDVRRDGQPHLNHIRNFKLAPAEVQFLLPETNRKGFYSLYRNGTLQSFYSTSEKLLLFE--------------------  354 (733)
T ss_pred             eeeeecCCCCcceeeeccccCcccceeeccccccceEEEEcCCCceeeeecccCcceehh--------------------
Confidence            5 544411                         112222222233322221111111000                    


Q ss_pred             eEEccccceEEEEEcCCCCeEEEeeecCCCcEEEEeecc
Q 042146          223 YIVSHRDPVISVASHPAKNIIASGALDNDRTMKIWTQEK  261 (262)
Q Consensus       223 ~~~~~~~~v~~~~~~p~~~~l~~~~~d~d~~i~iw~~~~  261 (262)
                         .--..+.-+++||.+.+|++-   +.|.|+++.+++
T Consensus       355 ---~~~~~~~~~~~Sp~~~~Ll~e---~~gki~~~~l~N  387 (733)
T COG4590         355 ---RAYQAPQLVAMSPNQAYLLSE---DQGKIRLAQLEN  387 (733)
T ss_pred             ---hhhcCcceeeeCcccchheee---cCCceEEEEecC
Confidence               022356678899999999886   478999998865

>PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length

Probab=96.79  E-value=0.079  Score=45.04  Aligned_cols=120  Identities=13%  Similarity=0.199  Sum_probs=71.6

Q ss_pred             ceEEEEEeCCCCEEEeecCCCeEEEEECCCCeeeeeee-cCCCCeeeEEEcc--CCCEEEEEeCCCeEEEEeCCCCCccE
Q 042146          102 YVFCINFNPQSNRIVSDTFNETIRIWDIKTGKCLKVLP-AHSDPVTAIDFNR--DGTMIVTSSYDGLYRILDASTPNGKF  178 (262)
Q Consensus       102 ~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~-~~~~~v~~~~~~~--~~~~l~~~~~dg~i~~~d~~~~~~~~  178 (262)
                      ...-+.-+.-++..++-+....+.|||.+.+....+-. ...+.|.++.|..  +++.+++.+....|.+|.....  .+
T Consensus        31 ~~~li~gss~~k~a~V~~~~~~LtIWD~~~~~lE~~~~f~~~~~I~dLDWtst~d~qsiLaVGf~~~v~l~~Q~R~--dy  108 (631)
T PF12234_consen   31 NPSLISGSSIKKIAVVDSSRSELTIWDTRSGVLEYEESFSEDDPIRDLDWTSTPDGQSILAVGFPHHVLLYTQLRY--DY  108 (631)
T ss_pred             CcceEeecccCcEEEEECCCCEEEEEEcCCcEEEEeeeecCCCceeeceeeecCCCCEEEEEEcCcEEEEEEccch--hh
Confidence            34444455555555555556689999999887554432 3467899999964  7777777777777776654320  00


Q ss_pred             EEEEcCCCeEEEEecCCCceeeEEeccCCceeEEEEEEecCCCeeEEccc-cceEEEEEcCCCCeEEEeeecCCCcEEEE
Q 042146          179 ILVGTLDNTLRLWNYSTRKILKTYSGYTNSKYCISSTFSVTNGKYIVSHR-DPVISVASHPAKNIIASGALDNDRTMKIW  257 (262)
Q Consensus       179 l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~v~~~~~~p~~~~l~~~~~d~d~~i~iw  257 (262)
                      +-.           .....+++.+.-.                    .+. .+|.+..|.++|.+++.+|    +.+.|+
T Consensus       109 ~~~-----------~p~w~~i~~i~i~--------------------~~T~h~Igds~Wl~~G~LvV~sG----Nqlfv~  153 (631)
T PF12234_consen  109 TNK-----------GPSWAPIRKIDIS--------------------SHTPHPIGDSIWLKDGTLVVGSG----NQLFVF  153 (631)
T ss_pred             hcC-----------CcccceeEEEEee--------------------cCCCCCccceeEecCCeEEEEeC----CEEEEE
Confidence            000           0111122222110                    022 5788999999999887765    467776


Q ss_pred             e
Q 042146          258 T  258 (262)
Q Consensus       258 ~  258 (262)
                      +
T Consensus       154 d  154 (631)
T PF12234_consen  154 D  154 (631)
T ss_pred             C
Confidence            5

This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits.

>PHA02713 hypothetical protein; Provisional

Probab=96.67  E-value=0.12  Score=44.09  Aligned_cols=51  Identities=12%  Similarity=0.055  Sum_probs=28.1

Q ss_pred             CCCEEEeecCCC-----eEEEEECCCCeee--eeeecCCCCeeeEEEccCCCEEEEEeCC
Q 042146          111 QSNRIVSDTFNE-----TIRIWDIKTGKCL--KVLPAHSDPVTAIDFNRDGTMIVTSSYD  163 (262)
Q Consensus       111 ~~~~l~~~~~dg-----~i~vwd~~~~~~~--~~~~~~~~~v~~~~~~~~~~~l~~~~~d  163 (262)
                      ++++.+.|+.++     .+..||+++.+-.  ..+.........++  -++...+.|+.+
T Consensus       351 ~g~IYviGG~~~~~~~~sve~Ydp~~~~W~~~~~mp~~r~~~~~~~--~~g~IYviGG~~  408 (557)
T PHA02713        351 DDTIYAIGGQNGTNVERTIECYTMGDDKWKMLPDMPIALSSYGMCV--LDQYIYIIGGRT  408 (557)
T ss_pred             CCEEEEECCcCCCCCCceEEEEECCCCeEEECCCCCcccccccEEE--ECCEEEEEeCCC
Confidence            577777787654     4888998866422  12221111122222  257777777754

>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2

Probab=96.64  E-value=0.18  Score=37.87  Aligned_cols=191  Identities=16%  Similarity=0.093  Sum_probs=103.2

Q ss_pred             cccceecccCcC-ceEEEEEccCCCeEEEecCCCeEEEeecCCCCCCCCCCCCCCccccCCccccccceeEEEEecCCCc
Q 042146           13 YTLTQTLNGHLR-AVSYVKFSHDGRLLTSSSAEKTLLTYSLSSISNFDSTPPSPLQKFTGHEQGISDLATIRLWDVPTAT   91 (262)
Q Consensus        13 ~~~~~~~~~h~~-~v~~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~i~v~d~~~~~   91 (262)
                      ++.++++..... -...+.|..++.++-+.+.-|.=                                 .|+.+|+.+++
T Consensus        33 ~~vv~~ypHd~~aFTQGL~~~~~g~LyESTG~yG~S---------------------------------~l~~~d~~tg~   79 (264)
T PF05096_consen   33 YEVVETYPHDPTAFTQGLEFLDDGTLYESTGLYGQS---------------------------------SLRKVDLETGK   79 (264)
T ss_dssp             EEEEEEEE--TT-EEEEEEEEETTEEEEEECSTTEE---------------------------------EEEEEETTTSS
T ss_pred             eEEEEECCCCCcccCccEEecCCCEEEEeCCCCCcE---------------------------------EEEEEECCCCc
Confidence            345555542222 24556676777777777665531                                 35666777776


Q ss_pred             cceecccC-CcceEEEEEeCCCCEEEeecCCCeEEEEECCCCeeeeeeecCCCCeeeEEEccCCCEEEEEeCCCeEEEEe
Q 042146           92 SLKTLIGH-TNYVFCINFNPQSNRIVSDTFNETIRIWDIKTGKCLKVLPAHSDPVTAIDFNRDGTMIVTSSYDGLYRILD  170 (262)
Q Consensus        92 ~~~~~~~~-~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~d  170 (262)
                      ......-. .---..++.. ++++..-.-.++...+||..+.+.+.++.- .+.-+.++  .++..|+.+.....+..+|
T Consensus        80 ~~~~~~l~~~~FgEGit~~-~d~l~qLTWk~~~~f~yd~~tl~~~~~~~y-~~EGWGLt--~dg~~Li~SDGS~~L~~~d  155 (264)
T PF05096_consen   80 VLQSVPLPPRYFGEGITIL-GDKLYQLTWKEGTGFVYDPNTLKKIGTFPY-PGEGWGLT--SDGKRLIMSDGSSRLYFLD  155 (264)
T ss_dssp             EEEEEE-TTT--EEEEEEE-TTEEEEEESSSSEEEEEETTTTEEEEEEE--SSS--EEE--ECSSCEEEE-SSSEEEEE-
T ss_pred             EEEEEECCccccceeEEEE-CCEEEEEEecCCeEEEEccccceEEEEEec-CCcceEEE--cCCCEEEEECCccceEEEC
Confidence            55443211 1122334444 334444556789999999999998888864 45557777  5678888888888999999


Q ss_pred             CCC------------------------CCccEEEEEcCCCeEEEEecCCCceeeEEeccCCceeEEEEEEecCCCeeEEc
Q 042146          171 AST------------------------PNGKFILVGTLDNTLRLWNYSTRKILKTYSGYTNSKYCISSTFSVTNGKYIVS  226 (262)
Q Consensus       171 ~~~------------------------~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  226 (262)
                      ..+                        -+|...|=.=....|...|..+|+.+..+.-..-...     .. .... ...
T Consensus       156 P~~f~~~~~i~V~~~g~pv~~LNELE~i~G~IyANVW~td~I~~Idp~tG~V~~~iDls~L~~~-----~~-~~~~-~~~  228 (264)
T PF05096_consen  156 PETFKEVRTIQVTDNGRPVSNLNELEYINGKIYANVWQTDRIVRIDPETGKVVGWIDLSGLRPE-----VG-RDKS-RQP  228 (264)
T ss_dssp             TTT-SEEEEEE-EETTEE---EEEEEEETTEEEEEETTSSEEEEEETTT-BEEEEEE-HHHHHH-----HT-STTS-T--
T ss_pred             CcccceEEEEEEEECCEECCCcEeEEEEcCEEEEEeCCCCeEEEEeCCCCeEEEEEEhhHhhhc-----cc-cccc-ccc
Confidence            765                        2333333222334555667777777665532100000     00 0000 000


Q ss_pred             cccceEEEEEcCCCCeEEEee
Q 042146          227 HRDPVISVASHPAKNIIASGA  247 (262)
Q Consensus       227 ~~~~v~~~~~~p~~~~l~~~~  247 (262)
                      ...-.+.||++|..+.|...|
T Consensus       229 ~~dVLNGIAyd~~~~~l~vTG  249 (264)
T PF05096_consen  229 DDDVLNGIAYDPETDRLFVTG  249 (264)
T ss_dssp             TTS-EEEEEEETTTTEEEEEE
T ss_pred             cCCeeEeEeEeCCCCEEEEEe
Confidence            134578999999877666655

3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.

>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=96.61  E-value=0.3  Score=39.91  Aligned_cols=92  Identities=17%  Similarity=0.267  Sum_probs=52.4

Q ss_pred             eEEEEecCCCccceecccCCcceEEEEEeCCCCEEEeecC-----------CCeEEEEECCCCeee--eeeecCCCC--e
Q 042146           81 TIRLWDVPTATSLKTLIGHTNYVFCINFNPQSNRIVSDTF-----------NETIRIWDIKTGKCL--KVLPAHSDP--V  145 (262)
Q Consensus        81 ~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-----------dg~i~vwd~~~~~~~--~~~~~~~~~--v  145 (262)
                      .++++|+++++.+...... .....+.|.++++.|+-...           ...|+.|.+.+....  ..+......  .
T Consensus       151 ~l~v~Dl~tg~~l~d~i~~-~~~~~~~W~~d~~~~~y~~~~~~~~~~~~~~~~~v~~~~~gt~~~~d~lvfe~~~~~~~~  229 (414)
T PF02897_consen  151 TLRVFDLETGKFLPDGIEN-PKFSSVSWSDDGKGFFYTRFDEDQRTSDSGYPRQVYRHKLGTPQSEDELVFEEPDEPFWF  229 (414)
T ss_dssp             EEEEEETTTTEEEEEEEEE-EESEEEEECTTSSEEEEEECSTTTSS-CCGCCEEEEEEETTS-GGG-EEEEC-TTCTTSE
T ss_pred             EEEEEECCCCcCcCCcccc-cccceEEEeCCCCEEEEEEeCcccccccCCCCcEEEEEECCCChHhCeeEEeecCCCcEE
Confidence            4667788887655432111 11223999999877654332           224788888665322  333333332  5


Q ss_pred             eeEEEccCCCEEEEEeCC----CeEEEEeCCC
Q 042146          146 TAIDFNRDGTMIVTSSYD----GLYRILDAST  173 (262)
Q Consensus       146 ~~~~~~~~~~~l~~~~~d----g~i~~~d~~~  173 (262)
                      ..+..++++++++..+..    ..+.+.|+..
T Consensus       230 ~~~~~s~d~~~l~i~~~~~~~~s~v~~~d~~~  261 (414)
T PF02897_consen  230 VSVSRSKDGRYLFISSSSGTSESEVYLLDLDD  261 (414)
T ss_dssp             EEEEE-TTSSEEEEEEESSSSEEEEEEEECCC
T ss_pred             EEEEecCcccEEEEEEEccccCCeEEEEeccc
Confidence            678889999987764432    3467777765

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....

>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases

Probab=96.60  E-value=0.35  Score=40.55  Aligned_cols=28  Identities=21%  Similarity=0.302  Sum_probs=24.3

Q ss_pred             CEEEeecCCCeEEEEECCCCeeeeeeec
Q 042146          113 NRIVSDTFNETIRIWDIKTGKCLKVLPA  140 (262)
Q Consensus       113 ~~l~~~~~dg~i~vwd~~~~~~~~~~~~  140 (262)
                      ..++.++.+|.|.-+|.++++.+..+..
T Consensus       111 ~~V~v~~~~g~v~AlD~~TG~~~W~~~~  138 (488)
T cd00216         111 RKVFFGTFDGRLVALDAETGKQVWKFGN  138 (488)
T ss_pred             CeEEEecCCCeEEEEECCCCCEeeeecC
Confidence            6788888899999999999999888754

The alignment model contains an 8-bladed beta-propeller.

>KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport]

Probab=96.58  E-value=0.021  Score=50.36  Aligned_cols=62  Identities=24%  Similarity=0.319  Sum_probs=42.2

Q ss_pred             CCCEEEeecCCCeEEEEECCCC-eeeeeeecCCCCeeeEEEccCCCEEEEEeCCCeEEEEeCC
Q 042146          111 QSNRIVSDTFNETIRIWDIKTG-KCLKVLPAHSDPVTAIDFNRDGTMIVTSSYDGLYRILDAS  172 (262)
Q Consensus       111 ~~~~l~~~~~dg~i~vwd~~~~-~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~d~~  172 (262)
                      .+..++.|++.|.+-..|.... .+...=..-.++|++++|+.+|..++.|-.+|.|.+||+.
T Consensus        98 ~~~~ivi~Ts~ghvl~~d~~~nL~~~~~ne~v~~~Vtsvafn~dg~~l~~G~~~G~V~v~D~~  160 (1206)
T KOG2079|consen   98 VVVPIVIGTSHGHVLLSDMTGNLGPLHQNERVQGPVTSVAFNQDGSLLLAGLGDGHVTVWDMH  160 (1206)
T ss_pred             eeeeEEEEcCchhhhhhhhhcccchhhcCCccCCcceeeEecCCCceeccccCCCcEEEEEcc
Confidence            4667888998999999887653 1112222235799999999888877776666555555444

>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=96.53  E-value=0.13  Score=38.87  Aligned_cols=143  Identities=13%  Similarity=0.143  Sum_probs=84.9

Q ss_pred             eEEEEecCCCccceecccCCcc--eEEEEEeCCCCEEEeecC-----CCeEEEEECCCC-eeeeeeecCCCCeeeEEEcc
Q 042146           81 TIRLWDVPTATSLKTLIGHTNY--VFCINFNPQSNRIVSDTF-----NETIRIWDIKTG-KCLKVLPAHSDPVTAIDFNR  152 (262)
Q Consensus        81 ~i~v~d~~~~~~~~~~~~~~~~--v~~~~~~~~~~~l~~~~~-----dg~i~vwd~~~~-~~~~~~~~~~~~v~~~~~~~  152 (262)
                      ...++|....+.+..+...+..  --.=.|+|||.+|++.-.     .|.|-|||.+.+ +.+-++..|.-.-..+.+.+
T Consensus        92 f~~vfD~~~~~~pv~~~s~~~RHfyGHGvfs~dG~~LYATEndfd~~rGViGvYd~r~~fqrvgE~~t~GiGpHev~lm~  171 (366)
T COG3490          92 FAMVFDPNGAQEPVTLVSQEGRHFYGHGVFSPDGRLLYATENDFDPNRGVIGVYDAREGFQRVGEFSTHGIGPHEVTLMA  171 (366)
T ss_pred             eEEEECCCCCcCcEEEecccCceeecccccCCCCcEEEeecCCCCCCCceEEEEecccccceecccccCCcCcceeEEec
Confidence            4567888777666554321111  112358999999987543     368999999754 45677778887788999999


Q ss_pred             CCCEEEEEeCCCeEEEE-eCCCCCccEEEEEcCCCeEEEEecCCCceeeEEeccCCceeEEEEEEecCCCeeEEccccce
Q 042146          153 DGTMIVTSSYDGLYRIL-DASTPNGKFILVGTLDNTLRLWNYSTRKILKTYSGYTNSKYCISSTFSVTNGKYIVSHRDPV  231 (262)
Q Consensus       153 ~~~~l~~~~~dg~i~~~-d~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v  231 (262)
                      ||+.++.+.  |-|..- |..   ...|=..+..-.+.+.|..+|+++.+..-....                  +.-.|
T Consensus       172 DGrtlvvan--GGIethpdfg---R~~lNldsMePSlvlld~atG~liekh~Lp~~l------------------~~lSi  228 (366)
T COG3490         172 DGRTLVVAN--GGIETHPDFG---RTELNLDSMEPSLVLLDAATGNLIEKHTLPASL------------------RQLSI  228 (366)
T ss_pred             CCcEEEEeC--CceecccccC---ccccchhhcCccEEEEeccccchhhhccCchhh------------------hhcce
Confidence            999888764  323222 111   011112233344556666666665443221000                  44557


Q ss_pred             EEEEEcCCCCeEEEe
Q 042146          232 ISVASHPAKNIIASG  246 (262)
Q Consensus       232 ~~~~~~p~~~~l~~~  246 (262)
                      ..++..++|..++.+
T Consensus       229 RHld~g~dgtvwfgc  243 (366)
T COG3490         229 RHLDIGRDGTVWFGC  243 (366)
T ss_pred             eeeeeCCCCcEEEEE
Confidence            777777777766554

>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1

Probab=96.51  E-value=0.28  Score=38.35  Aligned_cols=117  Identities=13%  Similarity=0.172  Sum_probs=75.8

Q ss_pred             eEEEEecCCCccceecccCCcceEEEEEeCCCCEEEeecC----------CCeEEEEECCCCeeeeeeecCCC-------
Q 042146           81 TIRLWDVPTATSLKTLIGHTNYVFCINFNPQSNRIVSDTF----------NETIRIWDIKTGKCLKVLPAHSD-------  143 (262)
Q Consensus        81 ~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~----------dg~i~vwd~~~~~~~~~~~~~~~-------  143 (262)
                      .+.++|..+++.+..+..  +..-.+..+|+++.++++..          .-.|.+||..+-++..++.-...       
T Consensus        18 rv~viD~d~~k~lGmi~~--g~~~~~~~spdgk~~y~a~T~~sR~~rG~RtDvv~~~D~~TL~~~~EI~iP~k~R~~~~~   95 (342)
T PF06433_consen   18 RVYVIDADSGKLLGMIDT--GFLGNVALSPDGKTIYVAETFYSRGTRGERTDVVEIWDTQTLSPTGEIEIPPKPRAQVVP   95 (342)
T ss_dssp             EEEEEETTTTEEEEEEEE--ESSEEEEE-TTSSEEEEEEEEEEETTEEEEEEEEEEEETTTTEEEEEEEETTS-B--BS-
T ss_pred             eEEEEECCCCcEEEEeec--ccCCceeECCCCCEEEEEEEEEeccccccceeEEEEEecCcCcccceEecCCcchheecc
Confidence            588889888887666543  22334667999999886432          33699999999887776543222       


Q ss_pred             CeeeEEEccCCCEEEEEe--CCCeEEEEeCCC----------------C-CccEEEEEcCCCeEEEEecC-CCcee
Q 042146          144 PVTAIDFNRDGTMIVTSS--YDGLYRILDAST----------------P-NGKFILVGTLDNTLRLWNYS-TRKIL  199 (262)
Q Consensus       144 ~v~~~~~~~~~~~l~~~~--~dg~i~~~d~~~----------------~-~~~~l~~~~~dg~i~i~d~~-~~~~~  199 (262)
                      ....++++.++++++...  -...|.+.|+..                | .++-+.+-|.||.+.-..+. .|+..
T Consensus        96 ~~~~~~ls~dgk~~~V~N~TPa~SVtVVDl~~~kvv~ei~~PGC~~iyP~~~~~F~~lC~DGsl~~v~Ld~~Gk~~  171 (342)
T PF06433_consen   96 YKNMFALSADGKFLYVQNFTPATSVTVVDLAAKKVVGEIDTPGCWLIYPSGNRGFSMLCGDGSLLTVTLDADGKEA  171 (342)
T ss_dssp             -GGGEEE-TTSSEEEEEEESSSEEEEEEETTTTEEEEEEEGTSEEEEEEEETTEEEEEETTSCEEEEEETSTSSEE
T ss_pred             cccceEEccCCcEEEEEccCCCCeEEEEECCCCceeeeecCCCEEEEEecCCCceEEEecCCceEEEEECCCCCEe
Confidence            234467777888766643  445677777765                1 12346677889988888877 45554

4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....

>PF14727 PHTB1_N: PTHB1 N-terminus

Probab=96.50  E-value=0.25  Score=40.16  Aligned_cols=123  Identities=13%  Similarity=0.275  Sum_probs=75.0

Q ss_pred             CCCEEEeecCCCeEEEEECCCCe-----eeeeeecCCCCeeeEEEcc----CCCEEEEEeCCCeEEEEeCCC--------
Q 042146          111 QSNRIVSDTFNETIRIWDIKTGK-----CLKVLPAHSDPVTAIDFNR----DGTMIVTSSYDGLYRILDAST--------  173 (262)
Q Consensus       111 ~~~~l~~~~~dg~i~vwd~~~~~-----~~~~~~~~~~~v~~~~~~~----~~~~l~~~~~dg~i~~~d~~~--------  173 (262)
                      +...+++|+..|.++||++..+.     .+.+.+ -+.+|..++.-+    .....++.-.-+.+.+|.+..        
T Consensus        36 ~~d~IivGS~~G~LrIy~P~~~~~~~~~lllE~~-l~~PILqv~~G~F~s~~~~~~LaVLhP~kl~vY~v~~~~g~~~~g  114 (418)
T PF14727_consen   36 GSDKIIVGSYSGILRIYDPSGNEFQPEDLLLETQ-LKDPILQVECGKFVSGSEDLQLAVLHPRKLSVYSVSLVDGTVEHG  114 (418)
T ss_pred             CccEEEEeccccEEEEEccCCCCCCCccEEEEEe-cCCcEEEEEeccccCCCCcceEEEecCCEEEEEEEEecCCCcccC
Confidence            34689999999999999986432     222222 356777776543    122233334556666776532        


Q ss_pred             ----------------------------CCccEEEEEcCCCeEEEEecCCCceeeEEeccCCceeEEEEEEecCCCeeEE
Q 042146          174 ----------------------------PNGKFILVGTLDNTLRLWNYSTRKILKTYSGYTNSKYCISSTFSVTNGKYIV  225 (262)
Q Consensus       174 ----------------------------~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  225 (262)
                                                  ....++.+-+.||.+.+|+-+.......++..-                   
T Consensus       115 ~~~~L~~~yeh~l~~~a~nm~~G~Fgg~~~~~~IcVQS~DG~L~~feqe~~~f~~~lp~~l-------------------  175 (418)
T PF14727_consen  115 NQYQLELIYEHSLQRTAYNMCCGPFGGVKGRDFICVQSMDGSLSFFEQESFAFSRFLPDFL-------------------  175 (418)
T ss_pred             cEEEEEEEEEEecccceeEEEEEECCCCCCceEEEEEecCceEEEEeCCcEEEEEEcCCCC-------------------
Confidence                                        235788888999999999876544334333211                   


Q ss_pred             ccccceEEEEEcCCCCeEEEeeecCCCcEEEEee
Q 042146          226 SHRDPVISVASHPAKNIIASGALDNDRTMKIWTQ  259 (262)
Q Consensus       226 ~~~~~v~~~~~~p~~~~l~~~~~d~d~~i~iw~~  259 (262)
                       ..+   .+.+.|.-..|++++  .+..+.-|+.
T Consensus       176 -lPg---Pl~Y~~~tDsfvt~s--ss~~l~~Yky  203 (418)
T PF14727_consen  176 -LPG---PLCYCPRTDSFVTAS--SSWTLECYKY  203 (418)
T ss_pred             -CCc---CeEEeecCCEEEEec--CceeEEEecH
Confidence             222   355666667777776  5666666654

>PHA03098 kelch-like protein; Provisional

Probab=96.49  E-value=0.4  Score=40.72  Aligned_cols=61  Identities=13%  Similarity=0.103  Sum_probs=32.6

Q ss_pred             CCCEEEeecCC-----CeEEEEECCCCeeee--eeecCCCCeeeEEEccCCCEEEEEeCC------CeEEEEeCCC
Q 042146          111 QSNRIVSDTFN-----ETIRIWDIKTGKCLK--VLPAHSDPVTAIDFNRDGTMIVTSSYD------GLYRILDAST  173 (262)
Q Consensus       111 ~~~~l~~~~~d-----g~i~vwd~~~~~~~~--~~~~~~~~v~~~~~~~~~~~l~~~~~d------g~i~~~d~~~  173 (262)
                      ++.+++.|+.+     ..+..||+.+++-..  .+...... .+++ .-+++.++.|+.+      ..+..||..+
T Consensus       342 ~~~lyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~lp~~r~~-~~~~-~~~~~iYv~GG~~~~~~~~~~v~~yd~~t  415 (534)
T PHA03098        342 NNRIYVIGGIYNSISLNTVESWKPGESKWREEPPLIFPRYN-PCVV-NVNNLIYVIGGISKNDELLKTVECFSLNT  415 (534)
T ss_pred             CCEEEEEeCCCCCEecceEEEEcCCCCceeeCCCcCcCCcc-ceEE-EECCEEEEECCcCCCCcccceEEEEeCCC
Confidence            56677777765     357788887654221  11111111 1122 2256677777632      3577888765

>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=96.45  E-value=0.27  Score=37.41  Aligned_cols=148  Identities=8%  Similarity=0.134  Sum_probs=90.5

Q ss_pred             cccCcCceEEEEEccCCCeEEEecCCCeEEEeecCCCCCCCCCCCCCCccccCCccccccceeEEEEecCCCccceeccc
Q 042146           19 LNGHLRAVSYVKFSHDGRLLTSSSAEKTLLTYSLSSISNFDSTPPSPLQKFTGHEQGISDLATIRLWDVPTATSLKTLIG   98 (262)
Q Consensus        19 ~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~i~v~d~~~~~~~~~~~~   98 (262)
                      +.+-...|.++.|+|+.+.|++......-.++=                                   ..+|+.+.+++-
T Consensus        81 i~g~~~nvS~LTynp~~rtLFav~n~p~~iVEl-----------------------------------t~~GdlirtiPL  125 (316)
T COG3204          81 ILGETANVSSLTYNPDTRTLFAVTNKPAAIVEL-----------------------------------TKEGDLIRTIPL  125 (316)
T ss_pred             cccccccccceeeCCCcceEEEecCCCceEEEE-----------------------------------ecCCceEEEecc
Confidence            345556699999999999888877666554441                                   123455544321


Q ss_pred             C-CcceEEEEEeCCCCEEEeecCCCeEEEEECCCCeeee----------eeecCCCCeeeEEEccCCCEEEEEeCCCeEE
Q 042146           99 H-TNYVFCINFNPQSNRIVSDTFNETIRIWDIKTGKCLK----------VLPAHSDPVTAIDFNRDGTMIVTSSYDGLYR  167 (262)
Q Consensus        99 ~-~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~----------~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~  167 (262)
                      . -.....|.+.-+++++++-=.++.+.++.+.....+.          .....+.....++|.|....|+.+=.-.-+.
T Consensus       126 ~g~~DpE~Ieyig~n~fvi~dER~~~l~~~~vd~~t~~~~~~~~~i~L~~~~k~N~GfEGlA~d~~~~~l~~aKEr~P~~  205 (316)
T COG3204         126 TGFSDPETIEYIGGNQFVIVDERDRALYLFTVDADTTVISAKVQKIPLGTTNKKNKGFEGLAWDPVDHRLFVAKERNPIG  205 (316)
T ss_pred             cccCChhHeEEecCCEEEEEehhcceEEEEEEcCCccEEeccceEEeccccCCCCcCceeeecCCCCceEEEEEccCCcE
Confidence            1 1223456666666666666667777777665432111          1111255778899999888777777666666


Q ss_pred             EEeCCC-------------------------------CCccEEEEEcCCCeEEEEecCCCceeeEE
Q 042146          168 ILDAST-------------------------------PNGKFILVGTLDNTLRLWNYSTRKILKTY  202 (262)
Q Consensus       168 ~~d~~~-------------------------------~~~~~l~~~~~dg~i~i~d~~~~~~~~~~  202 (262)
                      +|....                               ..+..|+.+.+++.+.-.|.. |..+..+
T Consensus       206 I~~~~~~~~~l~~~~~~~~~~~~~~f~~DvSgl~~~~~~~~LLVLS~ESr~l~Evd~~-G~~~~~l  270 (316)
T COG3204         206 IFEVTQSPSSLSVHASLDPTADRDLFVLDVSGLEFNAITNSLLVLSDESRRLLEVDLS-GEVIELL  270 (316)
T ss_pred             EEEEecCCcccccccccCcccccceEeeccccceecCCCCcEEEEecCCceEEEEecC-CCeeeeE
Confidence            665433                               456677777777777777754 4444443

>COG5167 VID27 Protein involved in vacuole import and degradation [Intracellular trafficking and secretion]

Probab=96.42  E-value=0.13  Score=42.19  Aligned_cols=122  Identities=13%  Similarity=0.163  Sum_probs=82.0

Q ss_pred             CCCEEE-eecCCCeEEEEECCCCeeeeeeecCCCCeeeEEEccCCC-------EEEEEeCCCeEEEEeCCC---------
Q 042146          111 QSNRIV-SDTFNETIRIWDIKTGKCLKVLPAHSDPVTAIDFNRDGT-------MIVTSSYDGLYRILDAST---------  173 (262)
Q Consensus       111 ~~~~l~-~~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~-------~l~~~~~dg~i~~~d~~~---------  173 (262)
                      +..+++ .|.....++-.|++.|+.+.+...|..-  -+.|.|+.+       .-++|-.+..|.-.|.|.         
T Consensus       478 dssli~~dg~~~~kLykmDIErGkvveeW~~~ddv--vVqy~p~~kf~qmt~eqtlvGlS~~svFrIDPR~~gNKi~v~e  555 (776)
T COG5167         478 DSSLIYLDGGERDKLYKMDIERGKVVEEWDLKDDV--VVQYNPYFKFQQMTDEQTLVGLSDYSVFRIDPRARGNKIKVVE  555 (776)
T ss_pred             CcceEEecCCCcccceeeecccceeeeEeecCCcc--eeecCCchhHHhcCccceEEeecccceEEecccccCCceeeee
Confidence            445544 4666678888899999999888776654  466666321       223444455555555443         


Q ss_pred             ---------------CCccEEEEEcCCCeEEEEecCCCceeeEEeccCCceeEEEEEEecCCCeeEEccccceEEEEEcC
Q 042146          174 ---------------PNGKFILVGTLDNTLRLWNYSTRKILKTYSGYTNSKYCISSTFSVTNGKYIVSHRDPVISVASHP  238 (262)
Q Consensus       174 ---------------~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p  238 (262)
                                     ....++++|+..|.|++||.-..+.-..+++                      -...|..+..+.
T Consensus       556 sKdY~tKn~Fss~~tTesGyIa~as~kGDirLyDRig~rAKtalP~----------------------lG~aIk~idvta  613 (776)
T COG5167         556 SKDYKTKNKFSSGMTTESGYIAAASRKGDIRLYDRIGKRAKTALPG----------------------LGDAIKHIDVTA  613 (776)
T ss_pred             ehhccccccccccccccCceEEEecCCCceeeehhhcchhhhcCcc----------------------cccceeeeEeec
Confidence                           4567999999999999999654444444444                      667888899999


Q ss_pred             CCCeEEEeeecCCCcEEEEee
Q 042146          239 AKNIIASGALDNDRTMKIWTQ  259 (262)
Q Consensus       239 ~~~~l~~~~~d~d~~i~iw~~  259 (262)
                      +|+.+++.+   ...+.+-++
T Consensus       614 ~Gk~ilaTC---k~yllL~d~  631 (776)
T COG5167         614 NGKHILATC---KNYLLLTDV  631 (776)
T ss_pred             CCcEEEEee---cceEEEEec
Confidence            999887776   235555554

>PF14727 PHTB1_N: PTHB1 N-terminus

Probab=96.40  E-value=0.4  Score=38.99  Aligned_cols=59  Identities=10%  Similarity=0.079  Sum_probs=42.1

Q ss_pred             CCEEEeecCCCeEEEEECCCCeeeeeeecCCCCeeeEEEccCCCEEEEEeCCCeEEEEeC
Q 042146          112 SNRIVSDTFNETIRIWDIKTGKCLKVLPAHSDPVTAIDFNRDGTMIVTSSYDGLYRILDA  171 (262)
Q Consensus       112 ~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~d~  171 (262)
                      ..++++-+-||.+.+|+-+.-...+.+.. ---.-.+.|.|..+.|++++.+..+.-|..
T Consensus       145 ~~~IcVQS~DG~L~~feqe~~~f~~~lp~-~llPgPl~Y~~~tDsfvt~sss~~l~~Yky  203 (418)
T PF14727_consen  145 RDFICVQSMDGSLSFFEQESFAFSRFLPD-FLLPGPLCYCPRTDSFVTASSSWTLECYKY  203 (418)
T ss_pred             ceEEEEEecCceEEEEeCCcEEEEEEcCC-CCCCcCeEEeecCCEEEEecCceeEEEecH
Confidence            45788889999999999665443333333 222244778888889999998888888864

>COG3391 Uncharacterized conserved protein [Function unknown]

Probab=96.37  E-value=0.41  Score=38.71  Aligned_cols=121  Identities=17%  Similarity=0.239  Sum_probs=76.4

Q ss_pred             EEEEecCCCccceecccCCcceEEEEEeCCCCEEEeec-CCCeEEEEECCCCeeee-----eeecCCCCeeeEEEccCCC
Q 042146           82 IRLWDVPTATSLKTLIGHTNYVFCINFNPQSNRIVSDT-FNETIRIWDIKTGKCLK-----VLPAHSDPVTAIDFNRDGT  155 (262)
Q Consensus        82 i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~dg~i~vwd~~~~~~~~-----~~~~~~~~v~~~~~~~~~~  155 (262)
                      +.+.|..+.........-..+ ..+++.|+++.++... .++.|.+.|.......+     ...... .-..+.++|++.
T Consensus       142 vsvid~~t~~~~~~~~vG~~P-~~~a~~p~g~~vyv~~~~~~~v~vi~~~~~~v~~~~~~~~~~~~~-~P~~i~v~~~g~  219 (381)
T COG3391         142 VSVIDAATNKVTATIPVGNTP-TGVAVDPDGNKVYVTNSDDNTVSVIDTSGNSVVRGSVGSLVGVGT-GPAGIAVDPDGN  219 (381)
T ss_pred             EEEEeCCCCeEEEEEecCCCc-ceEEECCCCCeEEEEecCCCeEEEEeCCCcceeccccccccccCC-CCceEEECCCCC
Confidence            334454555555553322234 7899999999766554 78899999977665543     122222 336788999998


Q ss_pred             EEEEEeCC---CeEEEEeCCC---------------------CCccEEEEEc-CCCeEEEEecCCCceeeEEec
Q 042146          156 MIVTSSYD---GLYRILDAST---------------------PNGKFILVGT-LDNTLRLWNYSTRKILKTYSG  204 (262)
Q Consensus       156 ~l~~~~~d---g~i~~~d~~~---------------------~~~~~l~~~~-~dg~i~i~d~~~~~~~~~~~~  204 (262)
                      .+.+....   +.+...|...                     |++.++.+.. ..+.+.+.|..+......+..
T Consensus       220 ~~yV~~~~~~~~~v~~id~~~~~v~~~~~~~~~~~~~~v~~~p~g~~~yv~~~~~~~V~vid~~~~~v~~~~~~  293 (381)
T COG3391         220 RVYVANDGSGSNNVLKIDTATGNVTATDLPVGSGAPRGVAVDPAGKAAYVANSQGGTVSVIDGATDRVVKTGPT  293 (381)
T ss_pred             EEEEEeccCCCceEEEEeCCCceEEEeccccccCCCCceeECCCCCEEEEEecCCCeEEEEeCCCCceeeeecc
Confidence            66655443   5788777665                     4556565553 336777777777666665543

>PHA02713 hypothetical protein; Provisional

Probab=96.25  E-value=0.38  Score=41.02  Aligned_cols=61  Identities=10%  Similarity=0.127  Sum_probs=34.4

Q ss_pred             CCCEEEeecCC------CeEEEEECCCCeee--eeeecCCCCeeeEEEccCCCEEEEEeCCC-----eEEEEeCCC
Q 042146          111 QSNRIVSDTFN------ETIRIWDIKTGKCL--KVLPAHSDPVTAIDFNRDGTMIVTSSYDG-----LYRILDAST  173 (262)
Q Consensus       111 ~~~~l~~~~~d------g~i~vwd~~~~~~~--~~~~~~~~~v~~~~~~~~~~~l~~~~~dg-----~i~~~d~~~  173 (262)
                      ++...+.|+.+      ..+..||+++..-.  ..+.........+  .-+++..+.|+.++     .+..||..+
T Consensus       303 ~~~IYviGG~~~~~~~~~~v~~Yd~~~n~W~~~~~m~~~R~~~~~~--~~~g~IYviGG~~~~~~~~sve~Ydp~~  376 (557)
T PHA02713        303 DNEIIIAGGYNFNNPSLNKVYKINIENKIHVELPPMIKNRCRFSLA--VIDDTIYAIGGQNGTNVERTIECYTMGD  376 (557)
T ss_pred             CCEEEEEcCCCCCCCccceEEEEECCCCeEeeCCCCcchhhceeEE--EECCEEEEECCcCCCCCCceEEEEECCC
Confidence            56667777753      34778998776421  1111111111222  23577778888654     477888765

>PF14781 BBS2_N: Ciliary BBSome complex subunit 2, N-terminal

Probab=96.24  E-value=0.19  Score=33.45  Aligned_cols=84  Identities=12%  Similarity=0.139  Sum_probs=48.3

Q ss_pred             EEEEeCCCCEEEeecCCCeEEEEECCCCeeeeeeecCCCCeeeEEEccCCCEEEEEeCCCeEEEEeCCCCCccEEEEEcC
Q 042146          105 CINFNPQSNRIVSDTFNETIRIWDIKTGKCLKVLPAHSDPVTAIDFNRDGTMIVTSSYDGLYRILDASTPNGKFILVGTL  184 (262)
Q Consensus       105 ~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~l~~~~~  184 (262)
                      .-+|....+.|++++.-|+|.|++..........  ...++.-+-+...-.-|++|..+.        ......|+.|+.
T Consensus         3 iGkfDG~~pcL~~aT~~gKV~IH~ph~~~~~~~~--~~~~i~~LNin~~italaaG~l~~--------~~~~D~LliGt~   72 (136)
T PF14781_consen    3 IGKFDGVHPCLACATTGGKVFIHNPHERGQRTGR--QDSDISFLNINQEITALAAGRLKP--------DDGRDCLLIGTQ   72 (136)
T ss_pred             EEEeCCCceeEEEEecCCEEEEECCCcccccccc--ccCceeEEECCCceEEEEEEecCC--------CCCcCEEEEecc
Confidence            3456666677888899999999998644321111  233444444444333444443221        123456666664


Q ss_pred             CCeEEEEecCCCcee
Q 042146          185 DNTLRLWNYSTRKIL  199 (262)
Q Consensus       185 dg~i~i~d~~~~~~~  199 (262)
                       ..+..||+....-+
T Consensus        73 -t~llaYDV~~N~d~   86 (136)
T PF14781_consen   73 -TSLLAYDVENNSDL   86 (136)
T ss_pred             -ceEEEEEcccCchh
Confidence             45778998865544

>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=96.08  E-value=0.55  Score=38.43  Aligned_cols=71  Identities=18%  Similarity=0.259  Sum_probs=46.9

Q ss_pred             ceEEEEEeCCCCEEEee-cC----CCeEEEEECCCCeeeeeeecCCCCeeeEEEccCCCEEEEEeCCC-----------e
Q 042146          102 YVFCINFNPQSNRIVSD-TF----NETIRIWDIKTGKCLKVLPAHSDPVTAIDFNRDGTMIVTSSYDG-----------L  165 (262)
Q Consensus       102 ~v~~~~~~~~~~~l~~~-~~----dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg-----------~  165 (262)
                      .+....++|++++++.+ +.    ...|+++|+++++.+...-... ....+.|.++++.|+....+.           .
T Consensus       125 ~~~~~~~Spdg~~la~~~s~~G~e~~~l~v~Dl~tg~~l~d~i~~~-~~~~~~W~~d~~~~~y~~~~~~~~~~~~~~~~~  203 (414)
T PF02897_consen  125 SLGGFSVSPDGKRLAYSLSDGGSEWYTLRVFDLETGKFLPDGIENP-KFSSVSWSDDGKGFFYTRFDEDQRTSDSGYPRQ  203 (414)
T ss_dssp             EEEEEEETTTSSEEEEEEEETTSSEEEEEEEETTTTEEEEEEEEEE-ESEEEEECTTSSEEEEEECSTTTSS-CCGCCEE
T ss_pred             EeeeeeECCCCCEEEEEecCCCCceEEEEEEECCCCcCcCCccccc-ccceEEEeCCCCEEEEEEeCcccccccCCCCcE
Confidence            34467889999988743 22    3469999999998765431111 123399999988766655332           3


Q ss_pred             EEEEeCCC
Q 042146          166 YRILDAST  173 (262)
Q Consensus       166 i~~~d~~~  173 (262)
                      |+.|.+.+
T Consensus       204 v~~~~~gt  211 (414)
T PF02897_consen  204 VYRHKLGT  211 (414)
T ss_dssp             EEEEETTS
T ss_pred             EEEEECCC
Confidence            77777766

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....

>PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase

Probab=96.05  E-value=0.47  Score=36.33  Aligned_cols=173  Identities=17%  Similarity=0.286  Sum_probs=97.7

Q ss_pred             cCceEEEEEccCCCeEEEecCCCeEEEeecCCCCCCCCCC----------------CCCCcccc---CCccc----cccc
Q 042146           23 LRAVSYVKFSHDGRLLTSSSAEKTLLTYSLSSISNFDSTP----------------PSPLQKFT---GHEQG----ISDL   79 (262)
Q Consensus        23 ~~~v~~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~----------------~~~~~~~~---~~~~~----v~~~   79 (262)
                      ..+|..+...|+-+.|++-+ |+.+.++++..........                ......+.   .+...    +..-
T Consensus        35 ~~~I~ql~vl~~~~~llvLs-d~~l~~~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~f~~~~~~~~~~~L~va~k  113 (275)
T PF00780_consen   35 LSSITQLSVLPELNLLLVLS-DGQLYVYDLDSLEPVSTSAPLAFPKSRSLPTKLPETKGVSFFAVNGGHEGSRRLCVAVK  113 (275)
T ss_pred             cceEEEEEEecccCEEEEEc-CCccEEEEchhhccccccccccccccccccccccccCCeeEEeeccccccceEEEEEEC
Confidence            34499999999888777765 5999999987754333111                01111111   11110    0111


Q ss_pred             eeEEEEecCCC-----ccceecccCCcceEEEEEeCCCCEEEeecCCCeEEEEECCCCeeeeeeecC------------C
Q 042146           80 ATIRLWDVPTA-----TSLKTLIGHTNYVFCINFNPQSNRIVSDTFNETIRIWDIKTGKCLKVLPAH------------S  142 (262)
Q Consensus        80 ~~i~v~d~~~~-----~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~------------~  142 (262)
                      ..|.+|.....     ...+++. -...+.+++|.  ++.++.|..+ ...+.|+.++.....+...            .
T Consensus       114 k~i~i~~~~~~~~~f~~~~ke~~-lp~~~~~i~~~--~~~i~v~~~~-~f~~idl~~~~~~~l~~~~~~~~~~~~~~~~~  189 (275)
T PF00780_consen  114 KKILIYEWNDPRNSFSKLLKEIS-LPDPPSSIAFL--GNKICVGTSK-GFYLIDLNTGSPSELLDPSDSSSSFKSRNSSS  189 (275)
T ss_pred             CEEEEEEEECCcccccceeEEEE-cCCCcEEEEEe--CCEEEEEeCC-ceEEEecCCCCceEEeCccCCcchhhhcccCC
Confidence            16666766543     2333333 34778899998  6677777755 4678899877654333211            1


Q ss_pred             CCeeeEEEccCCCEEEEEeCCCeEEEEeCCC------------------CCccEEEEEcCCCeEEEEecCCCceeeEEec
Q 042146          143 DPVTAIDFNRDGTMIVTSSYDGLYRILDAST------------------PNGKFILVGTLDNTLRLWNYSTRKILKTYSG  204 (262)
Q Consensus       143 ~~v~~~~~~~~~~~l~~~~~dg~i~~~d~~~------------------~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~  204 (262)
                      .++..+... ++.+|++ . |..-...|...                  -..+||++-..+ .|.||++.++++++.+..
T Consensus       190 ~~~~~~~~~-~~e~Ll~-~-~~~g~fv~~~G~~~r~~~i~W~~~p~~~~~~~pyli~~~~~-~iEV~~~~~~~lvQ~i~~  265 (275)
T PF00780_consen  190 KPLGIFQLS-DNEFLLC-Y-DNIGVFVNKNGEPSRKSTIQWSSAPQSVAYSSPYLIAFSSN-SIEVRSLETGELVQTIPL  265 (275)
T ss_pred             CceEEEEeC-CceEEEE-e-cceEEEEcCCCCcCcccEEEcCCchhEEEEECCEEEEECCC-EEEEEECcCCcEEEEEEC
Confidence            233333333 3444443 2 22222223222                  235677776664 599999999999998875

These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity

>PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus

Probab=96.03  E-value=0.19  Score=40.68  Aligned_cols=101  Identities=10%  Similarity=0.105  Sum_probs=64.3

Q ss_pred             cCCcceEEEEEeCCCCEEEeecCCCeEEEEECCCCeeeeeeecCCCCeeeEEEcc---CCCEEEEEeCCCeEEEEeCCCC
Q 042146           98 GHTNYVFCINFNPQSNRIVSDTFNETIRIWDIKTGKCLKVLPAHSDPVTAIDFNR---DGTMIVTSSYDGLYRILDASTP  174 (262)
Q Consensus        98 ~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~---~~~~l~~~~~dg~i~~~d~~~~  174 (262)
                      .....+.++..+|++++.++...-|.|.++|+.++..++.+++..+.  .+.|..   .+.. .. .........  ...
T Consensus       305 D~~R~~~~i~~sP~~~laA~tDslGRV~LiD~~~~~vvrmWKGYRdA--qc~wi~~~~~~~~-~~-~~~~~~~~~--~~~  378 (415)
T PF14655_consen  305 DSKREGESICLSPSGRLAAVTDSLGRVLLIDVARGIVVRMWKGYRDA--QCGWIEVPEEGDR-DR-SNSNSPKSS--SRF  378 (415)
T ss_pred             cCCceEEEEEECCCCCEEEEEcCCCcEEEEECCCChhhhhhccCccc--eEEEEEeeccccc-cc-ccccccCCC--Ccc
Confidence            34456889999999999999888899999999999999888876553  233321   1111 00 000000000  000


Q ss_pred             CccEEEEEcCCCeEEEEecCCCceeeEEec
Q 042146          175 NGKFILVGTLDNTLRLWNYSTRKILKTYSG  204 (262)
Q Consensus       175 ~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~  204 (262)
                      .--+++-+..-|.|.||.+++|..+..+..
T Consensus       379 ~l~LvIyaprRg~lEvW~~~~g~Rv~a~~v  408 (415)
T PF14655_consen  379 ALFLVIYAPRRGILEVWSMRQGPRVAAFNV  408 (415)
T ss_pred             eEEEEEEeccCCeEEEEecCCCCEEEEEEe
Confidence            111344566789999999999988887764

>PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins

Probab=96.00  E-value=0.036  Score=28.68  Aligned_cols=31  Identities=16%  Similarity=0.325  Sum_probs=23.6

Q ss_pred             CCeeeEEEccCC---CEEEEEeCCCeEEEEeCCC
Q 042146          143 DPVTAIDFNRDG---TMIVTSSYDGLYRILDAST  173 (262)
Q Consensus       143 ~~v~~~~~~~~~---~~l~~~~~dg~i~~~d~~~  173 (262)
                      +.+.++.|+|.+   ++|+.+-.-|.|.++|+++
T Consensus         1 GAvR~~kFsP~~~~~DLL~~~E~~g~vhi~D~R~   34 (43)
T PF10313_consen    1 GAVRCCKFSPEPGGNDLLAWAEHQGRVHIVDTRS   34 (43)
T ss_pred             CCeEEEEeCCCCCcccEEEEEccCCeEEEEEccc
Confidence            357899999843   4788877778888888773

It contains a characteristic DLL sequence motif.

>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]

Probab=95.97  E-value=0.54  Score=40.20  Aligned_cols=86  Identities=21%  Similarity=0.306  Sum_probs=50.7

Q ss_pred             CCCEEEeecCCCe-----EEEEECCCCeeeeeeecCCCCeeeEEEc-cCCCEEEEEeCCC------eEEEEeCCC-----
Q 042146          111 QSNRIVSDTFNET-----IRIWDIKTGKCLKVLPAHSDPVTAIDFN-RDGTMIVTSSYDG------LYRILDAST-----  173 (262)
Q Consensus       111 ~~~~l~~~~~dg~-----i~vwd~~~~~~~~~~~~~~~~v~~~~~~-~~~~~l~~~~~dg------~i~~~d~~~-----  173 (262)
                      +|.+.++|+.||.     |-.||.++.+-...-. ...+....... -+|...++|+.++      .+..||..+     
T Consensus       380 ~g~iYavGG~dg~~~l~svE~YDp~~~~W~~va~-m~~~r~~~gv~~~~g~iYi~GG~~~~~~~l~sve~YDP~t~~W~~  458 (571)
T KOG4441|consen  380 DGKLYAVGGFDGEKSLNSVECYDPVTNKWTPVAP-MLTRRSGHGVAVLGGKLYIIGGGDGSSNCLNSVECYDPETNTWTL  458 (571)
T ss_pred             CCEEEEEeccccccccccEEEecCCCCcccccCC-CCcceeeeEEEEECCEEEEEcCcCCCccccceEEEEcCCCCceee
Confidence            6788889998874     7788887664221111 11122222222 2677888888554      467777665     


Q ss_pred             ---------------CCccEEEEEcCCC-----eEEEEecCCCc
Q 042146          174 ---------------PNGKFILVGTLDN-----TLRLWNYSTRK  197 (262)
Q Consensus       174 ---------------~~~~~l~~~~~dg-----~i~i~d~~~~~  197 (262)
                                     -++...+.|+.|+     +|..||.++.+
T Consensus       459 ~~~M~~~R~~~g~a~~~~~iYvvGG~~~~~~~~~VE~ydp~~~~  502 (571)
T KOG4441|consen  459 IAPMNTRRSGFGVAVLNGKIYVVGGFDGTSALSSVERYDPETNQ  502 (571)
T ss_pred             cCCcccccccceEEEECCEEEEECCccCCCccceEEEEcCCCCc
Confidence                           3566777777665     25556665543

>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A

Probab=95.93  E-value=0.57  Score=36.37  Aligned_cols=134  Identities=12%  Similarity=0.094  Sum_probs=67.2

Q ss_pred             CCcceEEEEEeCCCCEEEeecCCCeEEEEECCCCeeeeeeecCCCCeeeEEEccCCCEEEEEeCCCeEEEEeCCC-----
Q 042146           99 HTNYVFCINFNPQSNRIVSDTFNETIRIWDIKTGKCLKVLPAHSDPVTAIDFNRDGTMIVTSSYDGLYRILDAST-----  173 (262)
Q Consensus        99 ~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~d~~~-----  173 (262)
                      ..+.+..+..+++|+++++++......-||.-...-...-+.....|.+|.|.|++.+.+.+ ..|.|+.=+...     
T Consensus       143 ~~gs~~~~~r~~dG~~vavs~~G~~~~s~~~G~~~w~~~~r~~~~riq~~gf~~~~~lw~~~-~Gg~~~~s~~~~~~~~w  221 (302)
T PF14870_consen  143 TSGSINDITRSSDGRYVAVSSRGNFYSSWDPGQTTWQPHNRNSSRRIQSMGFSPDGNLWMLA-RGGQIQFSDDPDDGETW  221 (302)
T ss_dssp             ----EEEEEE-TTS-EEEEETTSSEEEEE-TT-SS-EEEE--SSS-EEEEEE-TTS-EEEEE-TTTEEEEEE-TTEEEEE
T ss_pred             CcceeEeEEECCCCcEEEEECcccEEEEecCCCccceEEccCccceehhceecCCCCEEEEe-CCcEEEEccCCCCcccc
Confidence            34668888889999999998766666778754321111222346789999999997765544 777777766111     


Q ss_pred             --------------------CCccEEEEEcCCCeEEEEecCCCceeeEEeccCCceeEEEEEEecCCCeeEEccccceEE
Q 042146          174 --------------------PNGKFILVGTLDNTLRLWNYSTRKILKTYSGYTNSKYCISSTFSVTNGKYIVSHRDPVIS  233 (262)
Q Consensus       174 --------------------~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~  233 (262)
                                          +++...+ ++..|.+. .....|+.-+..+....                   -......
T Consensus       222 ~~~~~~~~~~~~~~ld~a~~~~~~~wa-~gg~G~l~-~S~DgGktW~~~~~~~~-------------------~~~n~~~  280 (302)
T PF14870_consen  222 SEPIIPIKTNGYGILDLAYRPPNEIWA-VGGSGTLL-VSTDGGKTWQKDRVGEN-------------------VPSNLYR  280 (302)
T ss_dssp             ---B-TTSS--S-EEEEEESSSS-EEE-EESTT-EE-EESSTTSS-EE-GGGTT-------------------SSS---E
T ss_pred             ccccCCcccCceeeEEEEecCCCCEEE-EeCCccEE-EeCCCCccceECccccC-------------------CCCceEE
Confidence                                2333333 33344332 33344444333332110                   2345778


Q ss_pred             EEEcCCCCeEEEeeecCCCcEEEE
Q 042146          234 VASHPAKNIIASGALDNDRTMKIW  257 (262)
Q Consensus       234 ~~~~p~~~~l~~~~~d~d~~i~iw  257 (262)
                      +.|.+..+-++.|   ++|.|.=|
T Consensus       281 i~f~~~~~gf~lG---~~G~ll~~  301 (302)
T PF14870_consen  281 IVFVNPDKGFVLG---QDGVLLRY  301 (302)
T ss_dssp             EEEEETTEEEEE----STTEEEEE
T ss_pred             EEEcCCCceEEEC---CCcEEEEe
Confidence            8887777777777   57877544

>PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation

Probab=95.92  E-value=0.51  Score=35.74  Aligned_cols=60  Identities=15%  Similarity=0.133  Sum_probs=38.6

Q ss_pred             ceEEEEEeCCCCEEEeecCCCeEEEEE-CCCCeee-eeeecC--CCCeeeEEEccCCCEEEEEe
Q 042146          102 YVFCINFNPQSNRIVSDTFNETIRIWD-IKTGKCL-KVLPAH--SDPVTAIDFNRDGTMIVTSS  161 (262)
Q Consensus       102 ~v~~~~~~~~~~~l~~~~~dg~i~vwd-~~~~~~~-~~~~~~--~~~v~~~~~~~~~~~l~~~~  161 (262)
                      .+..-.|++++...+....+...+++. ..++... ..+...  ...|.++.+||||..++...
T Consensus        67 ~l~~PS~d~~g~~W~v~~~~~~~~~~~~~~~g~~~~~~v~~~~~~~~I~~l~vSpDG~RvA~v~  130 (253)
T PF10647_consen   67 SLTRPSWDPDGWVWTVDDGSGGVRVVRDSASGTGEPVEVDWPGLRGRITALRVSPDGTRVAVVV  130 (253)
T ss_pred             ccccccccCCCCEEEEEcCCCceEEEEecCCCcceeEEecccccCCceEEEEECCCCcEEEEEE
Confidence            566778899988777766666666663 3333221 112111  12899999999999877655

It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues.

>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family

Probab=95.92  E-value=0.9  Score=38.51  Aligned_cols=55  Identities=15%  Similarity=0.103  Sum_probs=38.4

Q ss_pred             eEEEEecCCCccceecccCCcc---------eEEEEEeCCCC---EEEeecCCCeEEEEECCCCeee
Q 042146           81 TIRLWDVPTATSLKTLIGHTNY---------VFCINFNPQSN---RIVSDTFNETIRIWDIKTGKCL  135 (262)
Q Consensus        81 ~i~v~d~~~~~~~~~~~~~~~~---------v~~~~~~~~~~---~l~~~~~dg~i~vwd~~~~~~~  135 (262)
                      .|.-.|+++++....++.....         ..-+.+..+|+   .++.+..+|.+++.|-++++++
T Consensus       272 s~vAld~~TG~~~W~~Q~~~~D~wD~d~~~~p~l~d~~~~G~~~~~v~~~~K~G~~~vlDr~tG~~i  338 (527)
T TIGR03075       272 SIVARDPDTGKIKWHYQTTPHDEWDYDGVNEMILFDLKKDGKPRKLLAHADRNGFFYVLDRTNGKLL  338 (527)
T ss_pred             eEEEEccccCCEEEeeeCCCCCCccccCCCCcEEEEeccCCcEEEEEEEeCCCceEEEEECCCCcee
Confidence            6777888888887766532211         11222324665   6889999999999999999875

This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.

>KOG1897 consensus Damage-specific DNA binding complex, subunit DDB1 [Replication, recombination and repair]

Probab=95.91  E-value=1.2  Score=39.76  Aligned_cols=90  Identities=17%  Similarity=0.271  Sum_probs=62.8

Q ss_pred             eEEEEecCCCccceecccC--CcceEEEEEeCCCCEEEeecCCCeEEEEECCCCeeeeeeecCCCCeeeEEEccCCCEEE
Q 042146           81 TIRLWDVPTATSLKTLIGH--TNYVFCINFNPQSNRIVSDTFNETIRIWDIKTGKCLKVLPAHSDPVTAIDFNRDGTMIV  158 (262)
Q Consensus        81 ~i~v~d~~~~~~~~~~~~~--~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~  158 (262)
                      .|.++.....+.+.....+  ++.+.++..- +|+++|.-  ...|++|++.+.+.++.-..+..++..+...-.++.++
T Consensus       808 RIivfe~~e~~~L~~v~e~~v~Gav~aL~~f-ngkllA~I--n~~vrLye~t~~~eLr~e~~~~~~~~aL~l~v~gdeI~  884 (1096)
T KOG1897|consen  808 RIIVFEFEELNSLELVAETVVKGAVYALVEF-NGKLLAGI--NQSVRLYEWTTERELRIECNISNPIIALDLQVKGDEIA  884 (1096)
T ss_pred             eEEEEEEecCCceeeeeeeeeccceeehhhh-CCeEEEec--CcEEEEEEccccceehhhhcccCCeEEEEEEecCcEEE
Confidence            4667766664444443322  2444444332 56666554  46899999998877777667888999999999999999


Q ss_pred             EEeCCCeEEEEeCCC
Q 042146          159 TSSYDGLYRILDAST  173 (262)
Q Consensus       159 ~~~~dg~i~~~d~~~  173 (262)
                      +|..-+.+.+...+.
T Consensus       885 VgDlm~Sitll~y~~  899 (1096)
T KOG1897|consen  885 VGDLMRSITLLQYKG  899 (1096)
T ss_pred             EeeccceEEEEEEec
Confidence            999888877766554

>KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms]

Probab=95.88  E-value=0.47  Score=34.93  Aligned_cols=103  Identities=13%  Similarity=0.084  Sum_probs=61.4

Q ss_pred             CcceEEEEEeCCCCEEEeecCC---------CeEEEEECCCCeeeeeeecCCCCeeeEEEccCCCEEE-EEeCCCeEEEE
Q 042146          100 TNYVFCINFNPQSNRIVSDTFN---------ETIRIWDIKTGKCLKVLPAHSDPVTAIDFNRDGTMIV-TSSYDGLYRIL  169 (262)
Q Consensus       100 ~~~v~~~~~~~~~~~l~~~~~d---------g~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~-~~~~dg~i~~~  169 (262)
                      +...+.-..+|+|++++-.-.|         |.++.|-+. + .+..+...-+--+.++|+.+.+.+. +-+.+-.|.-|
T Consensus       108 knR~NDgkvdP~Gryy~GtMad~~~~le~~~g~Ly~~~~~-h-~v~~i~~~v~IsNgl~Wd~d~K~fY~iDsln~~V~a~  185 (310)
T KOG4499|consen  108 KNRLNDGKVDPDGRYYGGTMADFGDDLEPIGGELYSWLAG-H-QVELIWNCVGISNGLAWDSDAKKFYYIDSLNYEVDAY  185 (310)
T ss_pred             hcccccCccCCCCceeeeeeccccccccccccEEEEeccC-C-CceeeehhccCCccccccccCcEEEEEccCceEEeee
Confidence            3456677789999985432222         334444321 1 1222222223336688887766544 44566667666


Q ss_pred             eCC--C-----------------------------CCccEEEEEcCCCeEEEEecCCCceeeEEec
Q 042146          170 DAS--T-----------------------------PNGKFILVGTLDNTLRLWNYSTRKILKTYSG  204 (262)
Q Consensus       170 d~~--~-----------------------------~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~  204 (262)
                      |..  +                             ..|++.++.-..|+|...|+.+|+.+.++.-
T Consensus       186 dyd~~tG~~snr~~i~dlrk~~~~e~~~PDGm~ID~eG~L~Va~~ng~~V~~~dp~tGK~L~eikl  251 (310)
T KOG4499|consen  186 DYDCPTGDLSNRKVIFDLRKSQPFESLEPDGMTIDTEGNLYVATFNGGTVQKVDPTTGKILLEIKL  251 (310)
T ss_pred             ecCCCcccccCcceeEEeccCCCcCCCCCCcceEccCCcEEEEEecCcEEEEECCCCCcEEEEEEc
Confidence            622  2                             3456666666678899999999999999886

>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A

Probab=95.86  E-value=0.71  Score=36.87  Aligned_cols=130  Identities=18%  Similarity=0.127  Sum_probs=54.6

Q ss_pred             EEccCCCeEEEec-CCC--eEEEeecCCCCCCCCCCCCC----CccccCCcccccc---ceeEEEEecCCCccceecccC
Q 042146           30 KFSHDGRLLTSSS-AEK--TLLTYSLSSISNFDSTPPSP----LQKFTGHEQGISD---LATIRLWDVPTATSLKTLIGH   99 (262)
Q Consensus        30 ~~~~~~~~l~s~~-~d~--~i~iw~~~~~~~~~~~~~~~----~~~~~~~~~~v~~---~~~i~v~d~~~~~~~~~~~~~   99 (262)
                      +|.++|+.|+-++ .||  .+.+.|+++....+......    -..+......+..   ...|...|+.+.+....+.-.
T Consensus        42 ~ft~dG~kllF~s~~dg~~nly~lDL~t~~i~QLTdg~g~~~~g~~~s~~~~~~~Yv~~~~~l~~vdL~T~e~~~vy~~p  121 (386)
T PF14583_consen   42 CFTDDGRKLLFASDFDGNRNLYLLDLATGEITQLTDGPGDNTFGGFLSPDDRALYYVKNGRSLRRVDLDTLEERVVYEVP  121 (386)
T ss_dssp             -B-TTS-EEEEEE-TTSS-EEEEEETTT-EEEE---SS-B-TTT-EE-TTSSEEEEEETTTEEEEEETTT--EEEEEE--
T ss_pred             CcCCCCCEEEEEeccCCCcceEEEEcccCEEEECccCCCCCccceEEecCCCeEEEEECCCeEEEEECCcCcEEEEEECC
Confidence            3567887655544 454  56666666643322222111    1111222222221   126777788777654444444


Q ss_pred             CcceEEEEEe--CCCCEEEeec----------------------CCCeEEEEECCCCeeeeeeecCCCCeeeEEEccC-C
Q 042146          100 TNYVFCINFN--PQSNRIVSDT----------------------FNETIRIWDIKTGKCLKVLPAHSDPVTAIDFNRD-G  154 (262)
Q Consensus       100 ~~~v~~~~~~--~~~~~l~~~~----------------------~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~-~  154 (262)
                      ...+-...|.  .++..++-.-                      -...|.-.|+.+++....+. -...+..+.|+|. .
T Consensus       122 ~~~~g~gt~v~n~d~t~~~g~e~~~~d~~~l~~~~~f~e~~~a~p~~~i~~idl~tG~~~~v~~-~~~wlgH~~fsP~dp  200 (386)
T PF14583_consen  122 DDWKGYGTWVANSDCTKLVGIEISREDWKPLTKWKGFREFYEARPHCRIFTIDLKTGERKVVFE-DTDWLGHVQFSPTDP  200 (386)
T ss_dssp             TTEEEEEEEEE-TTSSEEEEEEEEGGG-----SHHHHHHHHHC---EEEEEEETTT--EEEEEE-ESS-EEEEEEETTEE
T ss_pred             cccccccceeeCCCccEEEEEEEeehhccCccccHHHHHHHhhCCCceEEEEECCCCceeEEEe-cCccccCcccCCCCC
Confidence            4444444443  3555543211                      02345556777776544443 3455667777773 3


Q ss_pred             CEEEEE
Q 042146          155 TMIVTS  160 (262)
Q Consensus       155 ~~l~~~  160 (262)
                      ..+.-|
T Consensus       201 ~li~fC  206 (386)
T PF14583_consen  201 TLIMFC  206 (386)
T ss_dssp             EEEEEE
T ss_pred             CEEEEe
Confidence            344443

>PF08801 Nucleoporin_N: Nup133 N terminal like; InterPro: IPR014908 Nucleoporins are the main components of the nuclear pore complex (NPC) in eukaryotic cells, and mediate bidirectional nucleocytoplasmic transport, especially of mRNA and proteins

Probab=95.80  E-value=0.87  Score=37.44  Aligned_cols=31  Identities=19%  Similarity=0.568  Sum_probs=24.9

Q ss_pred             ccceEEEEEcCCCCeEEEeeecCCCcEEEEeec
Q 042146          228 RDPVISVASHPAKNIIASGALDNDRTMKIWTQE  260 (262)
Q Consensus       228 ~~~v~~~~~~p~~~~l~~~~~d~d~~i~iw~~~  260 (262)
                      +..|.+++..+..+.|++..  .+|.|.+|++.
T Consensus       189 ~~~I~~v~~d~~r~~ly~l~--~~~~Iq~w~l~  219 (422)
T PF08801_consen  189 RPKIVQVAVDPSRRLLYTLT--SDGSIQVWDLG  219 (422)
T ss_dssp             ---EEEEEEETTTTEEEEEE--SSE-EEEEEE-
T ss_pred             hhceeeEEecCCcCEEEEEe--CCCcEEEEEEe
Confidence            34499999999999999999  89999999986

RNA undergoing nuclear export first encounters the basket of the nuclear pore and many nucleoporins are accessible on the basket side of the pore [, ]. This entry represents the N-terminal of Nucleoprotein which forms a seven-bladed beta propeller structure []. ; PDB: 1XKS_A.

>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin

Probab=95.77  E-value=0.079  Score=39.05  Aligned_cols=74  Identities=16%  Similarity=0.202  Sum_probs=43.2

Q ss_pred             ccEEEEEcCCCeEEEEecCCCceeeEEeccCCceeEEEEEEecCCCeeEEccccceEEEEEcCCCCeEEEeeecCCCcEE
Q 042146          176 GKFILVGTLDNTLRLWNYSTRKILKTYSGYTNSKYCISSTFSVTNGKYIVSHRDPVISVASHPAKNIIASGALDNDRTMK  255 (262)
Q Consensus       176 ~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~d~d~~i~  255 (262)
                      +++|++-+.+|.+++||+.+++.+..-..-.+-   +.... ..+.    .....|..+..+.+|.-+++-+   +|..+
T Consensus        22 ~~~Ll~iT~~G~l~vWnl~~~k~~~~~~Si~pl---l~~~~-~~~~----~~~~~i~~~~lt~~G~PiV~ls---ng~~y   90 (219)
T PF07569_consen   22 GSYLLAITSSGLLYVWNLKKGKAVLPPVSIAPL---LNSSP-VSDK----SSSPNITSCSLTSNGVPIVTLS---NGDSY   90 (219)
T ss_pred             CCEEEEEeCCCeEEEEECCCCeeccCCccHHHH---hcccc-cccC----CCCCcEEEEEEcCCCCEEEEEe---CCCEE
Confidence            456666777777888887776654332110000   00000 0000    2566788889998888888775   57888


Q ss_pred             EEeec
Q 042146          256 IWTQE  260 (262)
Q Consensus       256 iw~~~  260 (262)
                      .|+.+
T Consensus        91 ~y~~~   95 (219)
T PF07569_consen   91 SYSPD   95 (219)
T ss_pred             Eeccc
Confidence            88764

These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus

>PF08728 CRT10: CRT10; InterPro: IPR014839 CRT10 is a transcriptional regulator of ribonucleotide reductase (RNR) genes []

Probab=95.77  E-value=1.2  Score=38.74  Aligned_cols=92  Identities=13%  Similarity=0.150  Sum_probs=64.3

Q ss_pred             cceEEEEEeC--CCCEEEeecCCCeEEEEECCC-------C-------------eeeeeeecCCCCeeeEEEc--cCCCE
Q 042146          101 NYVFCINFNP--QSNRIVSDTFNETIRIWDIKT-------G-------------KCLKVLPAHSDPVTAIDFN--RDGTM  156 (262)
Q Consensus       101 ~~v~~~~~~~--~~~~l~~~~~dg~i~vwd~~~-------~-------------~~~~~~~~~~~~v~~~~~~--~~~~~  156 (262)
                      ..|+.|.+..  ....|+.+.+||.|.+|.+++       .             ++...+. -...++.++++  ...++
T Consensus       101 HtIN~i~v~~lg~~EVLl~c~DdG~V~~Yyt~~I~~~i~~~~~~~~~~~~r~~i~P~f~~~-v~~SaWGLdIh~~~~~rl  179 (717)
T PF08728_consen  101 HTINFIKVGDLGGEEVLLLCTDDGDVLAYYTETIIEAIERFSEDNDSGFSRLKIKPFFHLR-VGASAWGLDIHDYKKSRL  179 (717)
T ss_pred             ceeeEEEecccCCeeEEEEEecCCeEEEEEHHHHHHHHHhhccccccccccccCCCCeEee-cCCceeEEEEEecCcceE
Confidence            4566666554  566789999999999997631       0             0111122 24578999998  77888


Q ss_pred             EEEEeCCCeEEEEeCCC----------------------------CCcc-EEEEEcCCCeEEEEec
Q 042146          157 IVTSSYDGLYRILDAST----------------------------PNGK-FILVGTLDNTLRLWNY  193 (262)
Q Consensus       157 l~~~~~dg~i~~~d~~~----------------------------~~~~-~l~~~~~dg~i~i~d~  193 (262)
                      +|+++....|.||-...                            +.|. .+++++-.|.+.+|++
T Consensus       180 IAVSsNs~~VTVFaf~l~~~r~~~~~s~~~~hNIP~VSFl~~~~d~~G~v~v~a~dI~G~v~~~~I  245 (717)
T PF08728_consen  180 IAVSSNSQEVTVFAFALVDERFYHVPSHQHSHNIPNVSFLDDDLDPNGHVKVVATDISGEVWTFKI  245 (717)
T ss_pred             EEEecCCceEEEEEEeccccccccccccccccCCCeeEeecCCCCCccceEEEEEeccCcEEEEEE
Confidence            99988888888875432                            2232 7888899999998887

RNR catalyses the rate limiting step in dNTP synthesis. Mutations in CRT10 have been shown to enhance hydroxyurea resistance [].

>PRK10115 protease 2; Provisional

Probab=95.75  E-value=1.3  Score=38.99  Aligned_cols=117  Identities=13%  Similarity=0.077  Sum_probs=65.2

Q ss_pred             ceEEEEEccCCCeEEEecCCCeEEEeecCCCCCCCCCCCCCCccccCCccccccceeEEEEecCCCccceecccCCcceE
Q 042146           25 AVSYVKFSHDGRLLTSSSAEKTLLTYSLSSISNFDSTPPSPLQKFTGHEQGISDLATIRLWDVPTATSLKTLIGHTNYVF  104 (262)
Q Consensus        25 ~v~~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~i~v~d~~~~~~~~~~~~~~~~v~  104 (262)
                      .+..+.++|++++|+.+...+--.-+                              .|++.|+.++..+........  .
T Consensus       128 ~l~~~~~Spdg~~la~~~d~~G~E~~------------------------------~l~v~d~~tg~~l~~~i~~~~--~  175 (686)
T PRK10115        128 TLGGMAITPDNTIMALAEDFLSRRQY------------------------------GIRFRNLETGNWYPELLDNVE--P  175 (686)
T ss_pred             EEeEEEECCCCCEEEEEecCCCcEEE------------------------------EEEEEECCCCCCCCccccCcc--e
Confidence            36667788888877766433221111                              467777777654322211111  4


Q ss_pred             EEEEeCCCCEEEeecC-C-----CeEEEEECCCC--eeeeeeecCCCCee-eEEEccCCCEEEEEeC---CCeEEEEeCC
Q 042146          105 CINFNPQSNRIVSDTF-N-----ETIRIWDIKTG--KCLKVLPAHSDPVT-AIDFNRDGTMIVTSSY---DGLYRILDAS  172 (262)
Q Consensus       105 ~~~~~~~~~~l~~~~~-d-----g~i~vwd~~~~--~~~~~~~~~~~~v~-~~~~~~~~~~l~~~~~---dg~i~~~d~~  172 (262)
                      .++|.+|++.|+-... +     ..|..+++.++  +-...+........ .+..+.++++++..+.   ++.+.+++..
T Consensus       176 ~~~w~~D~~~~~y~~~~~~~~~~~~v~~h~lgt~~~~d~lv~~e~~~~~~~~~~~s~d~~~l~i~~~~~~~~~~~l~~~~  255 (686)
T PRK10115        176 SFVWANDSWTFYYVRKHPVTLLPYQVWRHTIGTPASQDELVYEEKDDTFYVSLHKTTSKHYVVIHLASATTSEVLLLDAE  255 (686)
T ss_pred             EEEEeeCCCEEEEEEecCCCCCCCEEEEEECCCChhHCeEEEeeCCCCEEEEEEEcCCCCEEEEEEECCccccEEEEECc
Confidence            5899998886654432 2     36888888877  33333333233333 3333447776655443   3568888854


Q ss_pred             C
Q 042146          173 T  173 (262)
Q Consensus       173 ~  173 (262)
                      .
T Consensus       256 ~  256 (686)
T PRK10115        256 L  256 (686)
T ss_pred             C
Confidence            4

>KOG2247 consensus WD40 repeat-containing protein [General function prediction only]

Probab=95.74  E-value=0.0044  Score=49.77  Aligned_cols=118  Identities=14%  Similarity=0.285  Sum_probs=85.2

Q ss_pred             EEEEeCCCCEEEeecCCCeEEEEECCCCeeeeeeecCCCCeeeEEEccCCCEE-EEEeCCCeEEEEeCCC----------
Q 042146          105 CINFNPQSNRIVSDTFNETIRIWDIKTGKCLKVLPAHSDPVTAIDFNRDGTMI-VTSSYDGLYRILDAST----------  173 (262)
Q Consensus       105 ~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l-~~~~~dg~i~~~d~~~----------  173 (262)
                      ...|-|.+.-++.++.+..+..|| +.++...... ..+....++|..++..+ +.+-..+.+.+||+.+          
T Consensus        39 ~~~w~~e~~nlavaca~tiv~~YD-~agq~~le~n-~tg~aldm~wDkegdvlavlAek~~piylwd~n~eytqqLE~gg  116 (615)
T KOG2247|consen   39 IHRWRPEGHNLAVACANTIVIYYD-KAGQVILELN-PTGKALDMAWDKEGDVLAVLAEKTGPIYLWDVNSEYTQQLESGG  116 (615)
T ss_pred             eeeEecCCCceehhhhhhHHHhhh-hhcceecccC-CchhHhhhhhccccchhhhhhhcCCCeeechhhhhhHHHHhccC
Confidence            456777666688888888999999 4455555543 35566788898888754 4556789999999887          


Q ss_pred             ----------CCccEEEEEcCCCeEEEEecCCCceeeEEeccCCceeEEEEEEecCCCeeEEccccceEEEEEcCCCCeE
Q 042146          174 ----------PNGKFILVGTLDNTLRLWNYSTRKILKTYSGYTNSKYCISSTFSVTNGKYIVSHRDPVISVASHPAKNII  243 (262)
Q Consensus       174 ----------~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l  243 (262)
                                +....++.+...|.+.||+..+.+.+.....                      |..+++++++.+.+..+
T Consensus       117 ~~s~sll~wsKg~~el~ig~~~gn~viynhgtsR~iiv~Gk----------------------h~RRgtq~av~lEd~vi  174 (615)
T KOG2247|consen  117 TSSKSLLAWSKGTPELVIGNNAGNIVIYNHGTSRRIIVMGK----------------------HQRRGTQIAVTLEDYVI  174 (615)
T ss_pred             cchHHHHhhccCCccccccccccceEEEeccchhhhhhhcc----------------------cccceeEEEecccceee
Confidence                      5667788888888899998776555544433                      77788888888876654


Q ss_pred             EEe
Q 042146          244 ASG  246 (262)
Q Consensus       244 ~~~  246 (262)
                      ..+
T Consensus       175 l~d  177 (615)
T KOG2247|consen  175 LCD  177 (615)
T ss_pred             ecC
Confidence            433

>PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea

Probab=95.68  E-value=0.79  Score=37.17  Aligned_cols=100  Identities=20%  Similarity=0.253  Sum_probs=53.1

Q ss_pred             eEEEEecCCCccceecccCC--cceEEEEEeC--CCCEEEeec-CCCeEEEEEC-CCCe----eeeeeecC---------
Q 042146           81 TIRLWDVPTATSLKTLIGHT--NYVFCINFNP--QSNRIVSDT-FNETIRIWDI-KTGK----CLKVLPAH---------  141 (262)
Q Consensus        81 ~i~v~d~~~~~~~~~~~~~~--~~v~~~~~~~--~~~~l~~~~-~dg~i~vwd~-~~~~----~~~~~~~~---------  141 (262)
                      .+.+||+.+.+.++++.--.  .....+.|..  +..+-++|+ -..+|..|-- +.++    .+-.+...         
T Consensus       223 ~l~vWD~~~r~~~Q~idLg~~g~~pLEvRflH~P~~~~gFvg~aLss~i~~~~k~~~g~W~a~kVi~ip~~~v~~~~lp~  302 (461)
T PF05694_consen  223 SLHVWDWSTRKLLQTIDLGEEGQMPLEVRFLHDPDANYGFVGCALSSSIWRFYKDDDGEWAAEKVIDIPAKKVEGWILPE  302 (461)
T ss_dssp             EEEEEETTTTEEEEEEES-TTEEEEEEEEE-SSTT--EEEEEEE--EEEEEEEE-ETTEEEEEEEEEE--EE--SS---G
T ss_pred             eEEEEECCCCcEeeEEecCCCCCceEEEEecCCCCccceEEEEeccceEEEEEEcCCCCeeeeEEEECCCcccCcccccc
Confidence            89999999999888775332  3466777765  444433332 3344544432 3331    22222110         


Q ss_pred             --------CCCeeeEEEccCCCEEEEEe-CCCeEEEEeCCCCCccEEE
Q 042146          142 --------SDPVTAIDFNRDGTMIVTSS-YDGLYRILDASTPNGKFIL  180 (262)
Q Consensus       142 --------~~~v~~~~~~~~~~~l~~~~-~dg~i~~~d~~~~~~~~l~  180 (262)
                              ..-|++|..|.|.++|+.++ ..|.++.||+..|....++
T Consensus       303 ml~~~~~~P~LitDI~iSlDDrfLYvs~W~~GdvrqYDISDP~~Pkl~  350 (461)
T PF05694_consen  303 MLKPFGAVPPLITDILISLDDRFLYVSNWLHGDVRQYDISDPFNPKLV  350 (461)
T ss_dssp             GGGGG-EE------EEE-TTS-EEEEEETTTTEEEEEE-SSTTS-EEE
T ss_pred             cccccccCCCceEeEEEccCCCEEEEEcccCCcEEEEecCCCCCCcEE
Confidence                    23479999999998877666 7888999998887766654

The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A.

>PF15390 DUF4613: Domain of unknown function (DUF4613)

Probab=95.65  E-value=0.31  Score=40.68  Aligned_cols=120  Identities=11%  Similarity=0.107  Sum_probs=71.3

Q ss_pred             CcCceEEEEEccC----CCeEEEecCCCeEEEeecCCCCCCCCCCCCCCccccCCccccccceeEEEEecCCCcccee--
Q 042146           22 HLRAVSYVKFSHD----GRLLTSSSAEKTLLTYSLSSISNFDSTPPSPLQKFTGHEQGISDLATIRLWDVPTATSLKT--   95 (262)
Q Consensus        22 h~~~v~~~~~~~~----~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~i~v~d~~~~~~~~~--   95 (262)
                      .-+.|..+.|.|-    ..-|++....+.|.+|.+.....                              +..+.+..  
T Consensus        55 qFEhV~GlsW~P~~~~~~paLLAVQHkkhVtVWqL~~s~~------------------------------e~~K~l~sQt  104 (671)
T PF15390_consen   55 QFEHVHGLSWAPPCTADTPALLAVQHKKHVTVWQLCPSTT------------------------------ERNKLLMSQT  104 (671)
T ss_pred             ccceeeeeeecCcccCCCCceEEEeccceEEEEEeccCcc------------------------------ccccceeeee
Confidence            3456899999885    33566667788999997642110                              11111111  


Q ss_pred             --cc-cCCcceEEEEEeCCCCEEEeecCCCeEEEEECCCC--eeeeeeecCCCCeeeEEEccCCCEEEEEe-CCCeEEEE
Q 042146           96 --LI-GHTNYVFCINFNPQSNRIVSDTFNETIRIWDIKTG--KCLKVLPAHSDPVTAIDFNRDGTMIVTSS-YDGLYRIL  169 (262)
Q Consensus        96 --~~-~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~--~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~dg~i~~~  169 (262)
                        +. ...---..+.|||....|++-.....-.+++++..  +....+ ...+-|.|.+|.+||+.|+++- ..=.-++|
T Consensus       105 cEi~e~~pvLpQGCVWHPk~~iL~VLT~~dvSV~~sV~~d~srVkaDi-~~~G~IhCACWT~DG~RLVVAvGSsLHSyiW  183 (671)
T PF15390_consen  105 CEIREPFPVLPQGCVWHPKKAILTVLTARDVSVLPSVHCDSSRVKADI-KTSGLIHCACWTKDGQRLVVAVGSSLHSYIW  183 (671)
T ss_pred             eeccCCcccCCCcccccCCCceEEEEecCceeEeeeeeeCCceEEEec-cCCceEEEEEecCcCCEEEEEeCCeEEEEEe
Confidence              00 00011234679998888877665555455666532  333334 3467899999999999776664 33456788


Q ss_pred             eCC
Q 042146          170 DAS  172 (262)
Q Consensus       170 d~~  172 (262)
                      |-.
T Consensus       184 d~~  186 (671)
T PF15390_consen  184 DSA  186 (671)
T ss_pred             cCc
Confidence            744

>PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins

Probab=95.64  E-value=0.083  Score=27.36  Aligned_cols=32  Identities=19%  Similarity=0.416  Sum_probs=25.7

Q ss_pred             cceEEEEEeCCC---CEEEeecCCCeEEEEECCCC
Q 042146          101 NYVFCINFNPQS---NRIVSDTFNETIRIWDIKTG  132 (262)
Q Consensus       101 ~~v~~~~~~~~~---~~l~~~~~dg~i~vwd~~~~  132 (262)
                      +.|.+++|+|.+   .+|+.+-..|.|.++|++++
T Consensus         1 GAvR~~kFsP~~~~~DLL~~~E~~g~vhi~D~R~~   35 (43)
T PF10313_consen    1 GAVRCCKFSPEPGGNDLLAWAEHQGRVHIVDTRSN   35 (43)
T ss_pred             CCeEEEEeCCCCCcccEEEEEccCCeEEEEEcccC
Confidence            368899999844   47777777899999999853

It contains a characteristic DLL sequence motif.

>PF14761 HPS3_N: Hermansky-Pudlak syndrome 3

Probab=95.64  E-value=0.56  Score=34.08  Aligned_cols=50  Identities=12%  Similarity=0.236  Sum_probs=36.4

Q ss_pred             CEEEeecCCCeEEEEECCC--CeeeeeeecCCCCeeeEEEccCCCEEEEEeCC
Q 042146          113 NRIVSDTFNETIRIWDIKT--GKCLKVLPAHSDPVTAIDFNRDGTMIVTSSYD  163 (262)
Q Consensus       113 ~~l~~~~~dg~i~vwd~~~--~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d  163 (262)
                      ..|+.+...+.|.+|++..  .++...+.. -+.|..+.++..|+++++--.+
T Consensus        29 d~Lfva~~g~~Vev~~l~~~~~~~~~~F~T-v~~V~~l~y~~~GDYlvTlE~k   80 (215)
T PF14761_consen   29 DALFVAASGCKVEVYDLEQEECPLLCTFST-VGRVLQLVYSEAGDYLVTLEEK   80 (215)
T ss_pred             ceEEEEcCCCEEEEEEcccCCCceeEEEcc-hhheeEEEeccccceEEEEEee
Confidence            4444445667899999983  345556643 4789999999999999987544

>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs

Probab=95.63  E-value=0.55  Score=41.14  Aligned_cols=33  Identities=15%  Similarity=0.231  Sum_probs=27.3

Q ss_pred             cccceEEEEEcCC---CCeEEEeeecCCCcEEEEeecc
Q 042146          227 HRDPVISVASHPA---KNIIASGALDNDRTMKIWTQEK  261 (262)
Q Consensus       227 ~~~~v~~~~~~p~---~~~l~~~~~d~d~~i~iw~~~~  261 (262)
                      +...|..+.|||.   +..|+.-.  .|+++|+||+.+
T Consensus       145 ~~~~i~qv~WhP~s~~~~~l~vLt--sdn~lR~y~~~~  180 (717)
T PF10168_consen  145 SSLEIKQVRWHPWSESDSHLVVLT--SDNTLRLYDISD  180 (717)
T ss_pred             CCceEEEEEEcCCCCCCCeEEEEe--cCCEEEEEecCC
Confidence            5678999999997   46777777  799999999863

It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].

>PHA02790 Kelch-like protein; Provisional

Probab=95.39  E-value=1.4  Score=36.98  Aligned_cols=61  Identities=8%  Similarity=0.033  Sum_probs=33.1

Q ss_pred             CCCEEEeecCC--CeEEEEECCCCeee--eeeecCCCCeeeEEEccCCCEEEEEeCCC---eEEEEeCCC
Q 042146          111 QSNRIVSDTFN--ETIRIWDIKTGKCL--KVLPAHSDPVTAIDFNRDGTMIVTSSYDG---LYRILDAST  173 (262)
Q Consensus       111 ~~~~l~~~~~d--g~i~vwd~~~~~~~--~~~~~~~~~v~~~~~~~~~~~l~~~~~dg---~i~~~d~~~  173 (262)
                      ++.+.+.|+.+  ..+..||..+++-.  ..+.........+  .-+++..+.|+.++   .+..||.++
T Consensus       318 ~~~iYviGG~~~~~sve~ydp~~n~W~~~~~l~~~r~~~~~~--~~~g~IYviGG~~~~~~~ve~ydp~~  385 (480)
T PHA02790        318 NNKLYVVGGLPNPTSVERWFHGDAAWVNMPSLLKPRCNPAVA--SINNVIYVIGGHSETDTTTEYLLPNH  385 (480)
T ss_pred             CCEEEEECCcCCCCceEEEECCCCeEEECCCCCCCCcccEEE--EECCEEEEecCcCCCCccEEEEeCCC
Confidence            56777777754  35788887765322  1221111111122  22577777777553   466787665

>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin

Probab=95.36  E-value=0.24  Score=36.57  Aligned_cols=64  Identities=20%  Similarity=0.308  Sum_probs=43.1

Q ss_pred             EeCCCCEEEeecCCCeEEEEECCCCeeeeee-------e-------cCCCCeeeEEEccCCCEEEEEeCCCeEEEEeCC
Q 042146          108 FNPQSNRIVSDTFNETIRIWDIKTGKCLKVL-------P-------AHSDPVTAIDFNRDGTMIVTSSYDGLYRILDAS  172 (262)
Q Consensus       108 ~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~-------~-------~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~d~~  172 (262)
                      +..+++++++.+.+|.+++||+.+++.+..-       .       .....|..+.++.+|.-+++-+ +|..+.|+..
T Consensus        18 l~~~~~~Ll~iT~~G~l~vWnl~~~k~~~~~~Si~pll~~~~~~~~~~~~~i~~~~lt~~G~PiV~ls-ng~~y~y~~~   95 (219)
T PF07569_consen   18 LECNGSYLLAITSSGLLYVWNLKKGKAVLPPVSIAPLLNSSPVSDKSSSPNITSCSLTSNGVPIVTLS-NGDSYSYSPD   95 (219)
T ss_pred             EEeCCCEEEEEeCCCeEEEEECCCCeeccCCccHHHHhcccccccCCCCCcEEEEEEcCCCCEEEEEe-CCCEEEeccc
Confidence            3446888999999999999999988754322       1       2345667777776666555443 4566666654

These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus

>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]

Probab=95.30  E-value=0.99  Score=38.67  Aligned_cols=90  Identities=16%  Similarity=0.281  Sum_probs=52.5

Q ss_pred             EEEEeCCCCEEEeecCC------CeEEEEECCCCeeee--eeecCCCCeeeEEEccCCCEEEEEeCCCe-----EEEEeC
Q 042146          105 CINFNPQSNRIVSDTFN------ETIRIWDIKTGKCLK--VLPAHSDPVTAIDFNRDGTMIVTSSYDGL-----YRILDA  171 (262)
Q Consensus       105 ~~~~~~~~~~l~~~~~d------g~i~vwd~~~~~~~~--~~~~~~~~v~~~~~~~~~~~l~~~~~dg~-----i~~~d~  171 (262)
                      ++++. ++.+.++|+.|      .++..||.++++-..  .+...........  -+|.+.++|+.||.     +-.||.
T Consensus       327 ~~~~~-~~~lYv~GG~~~~~~~l~~ve~YD~~~~~W~~~a~M~~~R~~~~v~~--l~g~iYavGG~dg~~~l~svE~YDp  403 (571)
T KOG4441|consen  327 GVAVL-NGKLYVVGGYDSGSDRLSSVERYDPRTNQWTPVAPMNTKRSDFGVAV--LDGKLYAVGGFDGEKSLNSVECYDP  403 (571)
T ss_pred             cEEEE-CCEEEEEccccCCCcccceEEEecCCCCceeccCCccCccccceeEE--ECCEEEEEeccccccccccEEEecC
Confidence            34444 45777888888      357888988765222  1211111111111  26788899998864     677776


Q ss_pred             CC--------------------CCccEEEEEcCCC------eEEEEecCCCc
Q 042146          172 ST--------------------PNGKFILVGTLDN------TLRLWNYSTRK  197 (262)
Q Consensus       172 ~~--------------------~~~~~l~~~~~dg------~i~i~d~~~~~  197 (262)
                      .+                    .++...++|+.++      .+..||..+.+
T Consensus       404 ~~~~W~~va~m~~~r~~~gv~~~~g~iYi~GG~~~~~~~l~sve~YDP~t~~  455 (571)
T KOG4441|consen  404 VTNKWTPVAPMLTRRSGHGVAVLGGKLYIIGGGDGSSNCLNSVECYDPETNT  455 (571)
T ss_pred             CCCcccccCCCCcceeeeEEEEECCEEEEEcCcCCCccccceEEEEcCCCCc
Confidence            65                    3566666666443      35566665543

>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A

Probab=95.29  E-value=1  Score=34.98  Aligned_cols=104  Identities=12%  Similarity=0.168  Sum_probs=55.1

Q ss_pred             CcCceEEEEEccCCCeEEEecCCCeEEEeecCCCCCCCCCCCCCCccccCCccccccceeEEEEecCCCcc-ce-ecccC
Q 042146           22 HLRAVSYVKFSHDGRLLTSSSAEKTLLTYSLSSISNFDSTPPSPLQKFTGHEQGISDLATIRLWDVPTATS-LK-TLIGH   99 (262)
Q Consensus        22 h~~~v~~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~i~v~d~~~~~~-~~-~~~~~   99 (262)
                      -.+.+..+.-+++|+++++++.-....-|+-                                     ++. -. .-...
T Consensus       143 ~~gs~~~~~r~~dG~~vavs~~G~~~~s~~~-------------------------------------G~~~w~~~~r~~  185 (302)
T PF14870_consen  143 TSGSINDITRSSDGRYVAVSSRGNFYSSWDP-------------------------------------GQTTWQPHNRNS  185 (302)
T ss_dssp             ----EEEEEE-TTS-EEEEETTSSEEEEE-T-------------------------------------T-SS-EEEE--S
T ss_pred             CcceeEeEEECCCCcEEEEECcccEEEEecC-------------------------------------CCccceEEccCc
Confidence            3467888888899998888876655555532                                     211 11 11224


Q ss_pred             CcceEEEEEeCCCCEEEeecCCCeEEEEEC-CCCeeeee----eecCCCCeeeEEEccCCCEEEEEeCC
Q 042146          100 TNYVFCINFNPQSNRIVSDTFNETIRIWDI-KTGKCLKV----LPAHSDPVTAIDFNRDGTMIVTSSYD  163 (262)
Q Consensus       100 ~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~-~~~~~~~~----~~~~~~~v~~~~~~~~~~~l~~~~~d  163 (262)
                      ...|..|.|.|++.+.+.+ ..|.|+.=+. .....-..    +..-.-.+..++|.++....++|+..
T Consensus       186 ~~riq~~gf~~~~~lw~~~-~Gg~~~~s~~~~~~~~w~~~~~~~~~~~~~~ld~a~~~~~~~wa~gg~G  253 (302)
T PF14870_consen  186 SRRIQSMGFSPDGNLWMLA-RGGQIQFSDDPDDGETWSEPIIPIKTNGYGILDLAYRPPNEIWAVGGSG  253 (302)
T ss_dssp             SS-EEEEEE-TTS-EEEEE-TTTEEEEEE-TTEEEEE---B-TTSS--S-EEEEEESSSS-EEEEESTT
T ss_pred             cceehhceecCCCCEEEEe-CCcEEEEccCCCCccccccccCCcccCceeeEEEEecCCCCEEEEeCCc
Confidence            5789999999998877655 7888887762 22221111    11122347899999887776666543

>TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family

Probab=95.25  E-value=2  Score=38.12  Aligned_cols=28  Identities=25%  Similarity=0.271  Sum_probs=23.1

Q ss_pred             CCCEEEeecCCCeEEEEECCCCeeeeee
Q 042146          111 QSNRIVSDTFNETIRIWDIKTGKCLKVL  138 (262)
Q Consensus       111 ~~~~l~~~~~dg~i~vwd~~~~~~~~~~  138 (262)
                      ++..++.++.|+.+.-.|.++++.+..+
T Consensus       259 ~~~rV~~~T~Dg~LiALDA~TGk~~W~f  286 (764)
T TIGR03074       259 CARRIILPTSDARLIALDADTGKLCEDF  286 (764)
T ss_pred             cCCEEEEecCCCeEEEEECCCCCEEEEe
Confidence            4567888888999999999999888765

This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases.

>PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length

Probab=95.24  E-value=1.8  Score=37.30  Aligned_cols=90  Identities=14%  Similarity=0.310  Sum_probs=59.0

Q ss_pred             eEEEEecCCCccceecc-cCCcceEEEEEe--CCCCEEEeecCCCeEEEEECCC---------Ceeeeee--ecCC-CCe
Q 042146           81 TIRLWDVPTATSLKTLI-GHTNYVFCINFN--PQSNRIVSDTFNETIRIWDIKT---------GKCLKVL--PAHS-DPV  145 (262)
Q Consensus        81 ~i~v~d~~~~~~~~~~~-~~~~~v~~~~~~--~~~~~l~~~~~dg~i~vwd~~~---------~~~~~~~--~~~~-~~v  145 (262)
                      .+.|||...+....... ...+.|..+.|.  |+++.+++.+....|.+|.-..         -.++..+  ..|+ .+|
T Consensus        52 ~LtIWD~~~~~lE~~~~f~~~~~I~dLDWtst~d~qsiLaVGf~~~v~l~~Q~R~dy~~~~p~w~~i~~i~i~~~T~h~I  131 (631)
T PF12234_consen   52 ELTIWDTRSGVLEYEESFSEDDPIRDLDWTSTPDGQSILAVGFPHHVLLYTQLRYDYTNKGPSWAPIRKIDISSHTPHPI  131 (631)
T ss_pred             EEEEEEcCCcEEEEeeeecCCCceeeceeeecCCCCEEEEEEcCcEEEEEEccchhhhcCCcccceeEEEEeecCCCCCc
Confidence            47788877666433221 346789999996  4888888888889999985421         1222322  3344 579


Q ss_pred             eeEEEccCCCEEEEEeCCCeEEEEeCC
Q 042146          146 TAIDFNRDGTMIVTSSYDGLYRILDAS  172 (262)
Q Consensus       146 ~~~~~~~~~~~l~~~~~dg~i~~~d~~  172 (262)
                      .+..|.++|..++.++  ..+.++|-.
T Consensus       132 gds~Wl~~G~LvV~sG--Nqlfv~dk~  156 (631)
T PF12234_consen  132 GDSIWLKDGTLVVGSG--NQLFVFDKW  156 (631)
T ss_pred             cceeEecCCeEEEEeC--CEEEEECCC
Confidence            9999999987665543  456666643

This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits.

>PF07250 Glyoxal_oxid_N: Glyoxal oxidase N-terminus; InterPro: IPR009880 This entry represents the N terminus (approximately 300 residues) of a number of plant and fungal glyoxal oxidase enzymes

Probab=95.22  E-value=0.92  Score=33.97  Aligned_cols=122  Identities=16%  Similarity=0.256  Sum_probs=71.3

Q ss_pred             eEEEEecCCCccceecccCCcceEEEEEeCCCCEEEeecC-C--CeEEEEECCC--Ceeee-----eeecCCCCeeeEEE
Q 042146           81 TIRLWDVPTATSLKTLIGHTNYVFCINFNPQSNRIVSDTF-N--ETIRIWDIKT--GKCLK-----VLPAHSDPVTAIDF  150 (262)
Q Consensus        81 ~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-d--g~i~vwd~~~--~~~~~-----~~~~~~~~v~~~~~  150 (262)
                      .=.+||+.+.+..-.......-..+-.+.|+|+++.+|+. +  ..+++++...  ..+-.     .+. ....-.....
T Consensus        47 ~s~~yD~~tn~~rpl~v~td~FCSgg~~L~dG~ll~tGG~~~G~~~ir~~~p~~~~~~~~w~e~~~~m~-~~RWYpT~~~  125 (243)
T PF07250_consen   47 HSVEYDPNTNTFRPLTVQTDTFCSGGAFLPDGRLLQTGGDNDGNKAIRIFTPCTSDGTCDWTESPNDMQ-SGRWYPTATT  125 (243)
T ss_pred             EEEEEecCCCcEEeccCCCCCcccCcCCCCCCCEEEeCCCCccccceEEEecCCCCCCCCceECccccc-CCCccccceE
Confidence            5568898876543211112222333456789999998875 2  3578887644  11111     111 1112233444


Q ss_pred             ccCCCEEEEEeCCCe-EEEEeCCC-----------------------------CCccEEEEEcCCCeEEEEecCCCceee
Q 042146          151 NRDGTMIVTSSYDGL-YRILDAST-----------------------------PNGKFILVGTLDNTLRLWNYSTRKILK  200 (262)
Q Consensus       151 ~~~~~~l~~~~~dg~-i~~~d~~~-----------------------------~~~~~l~~~~~dg~i~i~d~~~~~~~~  200 (262)
                      -|||+.|+.|+.... ..+|.-..                             |+|+.++.+..++  .|||..+.+.++
T Consensus       126 L~DG~vlIvGG~~~~t~E~~P~~~~~~~~~~~~~l~~~~~~~~~nlYP~~~llPdG~lFi~an~~s--~i~d~~~n~v~~  203 (243)
T PF07250_consen  126 LPDGRVLIVGGSNNPTYEFWPPKGPGPGPVTLPFLSQTSDTLPNNLYPFVHLLPDGNLFIFANRGS--IIYDYKTNTVVR  203 (243)
T ss_pred             CCCCCEEEEeCcCCCcccccCCccCCCCceeeecchhhhccCccccCceEEEcCCCCEEEEEcCCc--EEEeCCCCeEEe
Confidence            579999999887643 33333211                             8899998888654  467888887777


Q ss_pred             EEecc
Q 042146          201 TYSGY  205 (262)
Q Consensus       201 ~~~~~  205 (262)
                      .++.-
T Consensus       204 ~lP~l  208 (243)
T PF07250_consen  204 TLPDL  208 (243)
T ss_pred             eCCCC
Confidence            77653

Glyoxal oxidase catalyses the oxidation of aldehydes to carboxylic acids, coupled with reduction of dioxygen to hydrogen peroxide. It is an essential component of the extracellular lignin degradation pathways of the wood-rot fungus Phanerochaete chrysosporium [].

>KOG1916 consensus Nuclear protein, contains WD40 repeats [General function prediction only]

Probab=95.16  E-value=0.046  Score=47.56  Aligned_cols=102  Identities=18%  Similarity=0.243  Sum_probs=61.8

Q ss_pred             CCceeeec-ccccceecccCcCceEEEEE-----------ccCCCeEEEecCCCeEEEeecCCCCCCCCCCCCCCccccC
Q 042146            4 DRSLESFR-PYTLTQTLNGHLRAVSYVKF-----------SHDGRLLTSSSAEKTLLTYSLSSISNFDSTPPSPLQKFTG   71 (262)
Q Consensus         4 d~~i~~~~-~~~~~~~~~~h~~~v~~~~~-----------~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~   71 (262)
                      ++++..+. .......+.+|...+..++|           ||||..||+++.||.++.|                     
T Consensus       204 ~~~i~lL~~~ra~~~l~rsHs~~~~d~a~~~~g~~~l~~lSpDGtv~a~a~~dG~v~f~---------------------  262 (1283)
T KOG1916|consen  204 GGEIRLLNINRALRSLFRSHSQRVTDMAFFAEGVLKLASLSPDGTVFAWAISDGSVGFY---------------------  262 (1283)
T ss_pred             CCceeEeeechHHHHHHHhcCCCcccHHHHhhchhhheeeCCCCcEEEEeecCCcccee---------------------
Confidence            34444443 22334555668777776664           7888888888889988888                     


Q ss_pred             CccccccceeEEEEecCCCccceecccCC-cceEEEEEeCCC---------CEEEeecC-CCeEEEEECCCCeee
Q 042146           72 HEQGISDLATIRLWDVPTATSLKTLIGHT-NYVFCINFNPQS---------NRIVSDTF-NETIRIWDIKTGKCL  135 (262)
Q Consensus        72 ~~~~v~~~~~i~v~d~~~~~~~~~~~~~~-~~v~~~~~~~~~---------~~l~~~~~-dg~i~vwd~~~~~~~  135 (262)
                               .+++.+.....+++.++.|. .+-.|.-++.+.         .++++++. +..+++|....-+|+
T Consensus       263 ---------Qiyi~g~~~~rclhewkphd~~p~vC~lc~~~~~~~v~i~~w~~~Itttd~nre~k~w~~a~w~Cl  328 (1283)
T KOG1916|consen  263 ---------QIYITGKIVHRCLHEWKPHDKHPRVCWLCHKQEILVVSIGKWVLRITTTDVNREEKFWAEAPWQCL  328 (1283)
T ss_pred             ---------eeeeeccccHhhhhccCCCCCCCceeeeeccccccCCccceeEEEEecccCCcceeEeeccchhhh
Confidence                     46666666667777777766 333333344322         23444443 345788876554444

>KOG4460 consensus Nuclear pore complex, Nup88/rNup84 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=94.99  E-value=0.37  Score=39.70  Aligned_cols=84  Identities=13%  Similarity=0.166  Sum_probs=42.9

Q ss_pred             CCccEEEEEcCCCeEEEEecCCCceeeEEeccCCceeEEEEEEecCCCeeEEccccceEEEEEcCCC---CeEEEeeecC
Q 042146          174 PNGKFILVGTLDNTLRLWNYSTRKILKTYSGYTNSKYCISSTFSVTNGKYIVSHRDPVISVASHPAK---NIIASGALDN  250 (262)
Q Consensus       174 ~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~---~~l~~~~~d~  250 (262)
                      +.|..++..+.+|.+..+=.+....-..+......+.|.  .+.-....+.....-.+..++|||+.   ..|..-+  .
T Consensus       113 ~~GS~VaL~G~~Gi~vMeLp~rwG~~s~~eDgk~~v~CR--t~~i~~~~ftss~~ltl~Qa~WHP~S~~D~hL~iL~--s  188 (741)
T KOG4460|consen  113 PTGSHVALIGIKGLMVMELPKRWGKNSEFEDGKSTVNCR--TTPVAERFFTSSTSLTLKQAAWHPSSILDPHLVLLT--S  188 (741)
T ss_pred             CCCceEEEecCCeeEEEEchhhcCccceecCCCceEEEE--eecccceeeccCCceeeeeccccCCccCCceEEEEe--c
Confidence            556666666667755443222211112222211122221  22222222222233457889999975   4565556  7


Q ss_pred             CCcEEEEeecc
Q 042146          251 DRTMKIWTQEK  261 (262)
Q Consensus       251 d~~i~iw~~~~  261 (262)
                      |..||+|+..+
T Consensus       189 dnviRiy~lS~  199 (741)
T KOG4460|consen  189 DNVIRIYSLSE  199 (741)
T ss_pred             CcEEEEEecCC
Confidence            89999999864

>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain

Probab=94.99  E-value=1.5  Score=35.26  Aligned_cols=59  Identities=12%  Similarity=0.159  Sum_probs=32.3

Q ss_pred             cceEEEEEeCCCCEEEeecCCCeEEEEECCCC-----e--ee-eeeec----CCCCeeeEEEccCCCEEEEEe
Q 042146          101 NYVFCINFNPQSNRIVSDTFNETIRIWDIKTG-----K--CL-KVLPA----HSDPVTAIDFNRDGTMIVTSS  161 (262)
Q Consensus       101 ~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~-----~--~~-~~~~~----~~~~v~~~~~~~~~~~l~~~~  161 (262)
                      .....+++.+++ ++ +++.....++.|....     +  .+ ..+..    +......++|.|||.+.++-+
T Consensus        72 ~~p~Gi~~~~~G-ly-V~~~~~i~~~~d~~gdg~ad~~~~~l~~~~~~~~~~~~~~~~~l~~gpDG~LYv~~G  142 (367)
T TIGR02604        72 SMVTGLAVAVGG-VY-VATPPDILFLRDKDGDDKADGEREVLLSGFGGQINNHHHSLNSLAWGPDGWLYFNHG  142 (367)
T ss_pred             CCccceeEecCC-EE-EeCCCeEEEEeCCCCCCCCCCccEEEEEccCCCCCcccccccCceECCCCCEEEecc
Confidence            345788898888 44 4444433334354311     1  11 12222    123467899999998666554

All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.

>TIGR03118 PEPCTERM_chp_1 conserved hypothetical protein TIGR03118

Probab=94.98  E-value=1.2  Score=34.22  Aligned_cols=30  Identities=13%  Similarity=0.166  Sum_probs=25.5

Q ss_pred             CceEEEEEccCCCeEEEecCCCeEEEeecC
Q 042146           24 RAVSYVKFSHDGRLLTSSSAEKTLLTYSLS   53 (262)
Q Consensus        24 ~~v~~~~~~~~~~~l~s~~~d~~i~iw~~~   53 (262)
                      .--+.|+++|.+.+-++....+...+||..
T Consensus        23 ~N~WGia~~p~~~~WVadngT~~~TlYdg~   52 (336)
T TIGR03118        23 RNAWGLSYRPGGPFWVANTGTGTATLYVGN   52 (336)
T ss_pred             cccceeEecCCCCEEEecCCcceEEeecCC
Confidence            345789999999988888888999999876

This model describes and uncharacterized conserved hypothetical protein. Members are found with the C-terminal putative exosortase interaction domain, PEP-CTERM, in Nitrosospira multiformis, Rhodoferax ferrireducens, Solibacter usitatus Ellin6076, and Acidobacteria bacterium Ellin345. It is found without the PEP-CTERM domain in several other species, including Burkholderia ambifaria, Gloeobacter violaceus PCC 7421, and three copies in the Acanthamoeba polyphaga mimivirus.

>PF15390 DUF4613: Domain of unknown function (DUF4613)

Probab=94.86  E-value=2.1  Score=36.14  Aligned_cols=147  Identities=10%  Similarity=0.160  Sum_probs=76.0

Q ss_pred             cceEEEEEeCCCCEEEeec---CCCeEEEEECCCCeeeeeeecCCCCeeeEEEccC----CCEEEEEeCCCeEEEEeCCC
Q 042146          101 NYVFCINFNPQSNRIVSDT---FNETIRIWDIKTGKCLKVLPAHSDPVTAIDFNRD----GTMIVTSSYDGLYRILDAST  173 (262)
Q Consensus       101 ~~v~~~~~~~~~~~l~~~~---~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~----~~~l~~~~~dg~i~~~d~~~  173 (262)
                      .++..++|. ||+.++-..   .+|.+++=|   .+.+..|    ..|..+.|.|-    ...|++.-....|.+|.+..
T Consensus        20 HPvhGlaWT-DGkqVvLT~L~l~~gE~kfGd---s~viGqF----EhV~GlsW~P~~~~~~paLLAVQHkkhVtVWqL~~   91 (671)
T PF15390_consen   20 HPVHGLAWT-DGKQVVLTDLQLHNGEPKFGD---SKVIGQF----EHVHGLSWAPPCTADTPALLAVQHKKHVTVWQLCP   91 (671)
T ss_pred             ccccceEec-CCCEEEEEeeeeeCCccccCC---ccEeecc----ceeeeeeecCcccCCCCceEEEeccceEEEEEecc
Confidence            467888887 566544321   233333222   2233333    34889999983    33566667788999998763


Q ss_pred             ---CCccEEEEEcCC--------CeEEEEecCCCceeeEEeccCCceeEEEEEEecCCCee--EEccccceEEEEEcCCC
Q 042146          174 ---PNGKFILVGTLD--------NTLRLWNYSTRKILKTYSGYTNSKYCISSTFSVTNGKY--IVSHRDPVISVASHPAK  240 (262)
Q Consensus       174 ---~~~~~l~~~~~d--------g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~v~~~~~~p~~  240 (262)
                         ..++.+++-..+        ..=.+|..+ ...+..+...+..+.   .....++.++  -....+.|.|.+|.+||
T Consensus        92 s~~e~~K~l~sQtcEi~e~~pvLpQGCVWHPk-~~iL~VLT~~dvSV~---~sV~~d~srVkaDi~~~G~IhCACWT~DG  167 (671)
T PF15390_consen   92 STTERNKLLMSQTCEIREPFPVLPQGCVWHPK-KAILTVLTARDVSVL---PSVHCDSSRVKADIKTSGLIHCACWTKDG  167 (671)
T ss_pred             CccccccceeeeeeeccCCcccCCCcccccCC-CceEEEEecCceeEe---eeeeeCCceEEEeccCCceEEEEEecCcC
Confidence               233344332111        000245543 233333333221111   0111122222  12367889999999999


Q ss_pred             CeEEEeeecCCCcEEEEeec
Q 042146          241 NIIASGALDNDRTMKIWTQE  260 (262)
Q Consensus       241 ~~l~~~~~d~d~~i~iw~~~  260 (262)
                      +.|+.+-. ..=.-++||-.
T Consensus       168 ~RLVVAvG-SsLHSyiWd~~  186 (671)
T PF15390_consen  168 QRLVVAVG-SSLHSYIWDSA  186 (671)
T ss_pred             CEEEEEeC-CeEEEEEecCc
Confidence            98877641 22334678743

>KOG3630 consensus Nuclear pore complex, Nup214/CAN component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=94.83  E-value=0.33  Score=43.71  Aligned_cols=135  Identities=13%  Similarity=0.144  Sum_probs=73.6

Q ss_pred             CceEEEEEccCCCeEEE--ecCCCeEEEeecCCCCCCCCCCCCCCcccc-CCcccc------------------ccceeE
Q 042146           24 RAVSYVKFSHDGRLLTS--SSAEKTLLTYSLSSISNFDSTPPSPLQKFT-GHEQGI------------------SDLATI   82 (262)
Q Consensus        24 ~~v~~~~~~~~~~~l~s--~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~-~~~~~v------------------~~~~~i   82 (262)
                      -++..+...+|+...++  .+.+-.|..||+............++..-. .....+                  .....|
T Consensus       101 ~pi~~~v~~~D~t~s~v~~tsng~~v~~fD~~~fs~s~~~~~~pl~~s~ts~ek~vf~~~~~wnP~vp~n~av~l~dlsl  180 (1405)
T KOG3630|consen  101 IPIVIFVCFHDATDSVVVSTSNGEAVYSFDLEEFSESRYETTVPLKNSATSFEKPVFQLKNVWNPLVPLNSAVDLSDLSL  180 (1405)
T ss_pred             ccceEEEeccCCceEEEEEecCCceEEEEehHhhhhhhhhhccccccccchhccccccccccccCCccchhhhhccccch
Confidence            35667777888665444  344558999999876544332222111100 000000                  001122


Q ss_pred             EEEecCCCccceecccCCcceEEEEEeCCCCEEEeecCCCeEEEEECCCCeeeeeeec----CCCCeeeEEEccCCCEEE
Q 042146           83 RLWDVPTATSLKTLIGHTNYVFCINFNPQSNRIVSDTFNETIRIWDIKTGKCLKVLPA----HSDPVTAIDFNRDGTMIV  158 (262)
Q Consensus        83 ~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~----~~~~v~~~~~~~~~~~l~  158 (262)
                      ++..+........--......++++|+|.|++++.|-..|++.-|... .+....+.+    ....|.++.|-....+++
T Consensus       181 ~V~~~~~~~~~v~s~p~t~~~Tav~WSprGKQl~iG~nnGt~vQy~P~-leik~~ip~Pp~~e~yrvl~v~Wl~t~eflv  259 (1405)
T KOG3630|consen  181 RVKSTKQLAQNVTSFPVTNSQTAVLWSPRGKQLFIGRNNGTEVQYEPS-LEIKSEIPEPPVEENYRVLSVTWLSTQEFLV  259 (1405)
T ss_pred             hhhhhhhhhhhhcccCcccceeeEEeccccceeeEecCCCeEEEeecc-cceeecccCCCcCCCcceeEEEEecceeEEE
Confidence            222222111111111244668999999999999999999999999754 332233221    136789999986555544


Q ss_pred             E
Q 042146          159 T  159 (262)
Q Consensus       159 ~  159 (262)
                      +
T Consensus       260 v  260 (1405)
T KOG3630|consen  260 V  260 (1405)
T ss_pred             E
Confidence            3

>KOG3630 consensus Nuclear pore complex, Nup214/CAN component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=94.80  E-value=0.83  Score=41.38  Aligned_cols=127  Identities=13%  Similarity=0.037  Sum_probs=73.5

Q ss_pred             cceEEEEEeCCCCEEEe--ecCCCeEEEEECCCCeeee-----eee------cCCCCeeeEEEccCC-CEEEEEeCCCeE
Q 042146          101 NYVFCINFNPQSNRIVS--DTFNETIRIWDIKTGKCLK-----VLP------AHSDPVTAIDFNRDG-TMIVTSSYDGLY  166 (262)
Q Consensus       101 ~~v~~~~~~~~~~~l~~--~~~dg~i~vwd~~~~~~~~-----~~~------~~~~~v~~~~~~~~~-~~l~~~~~dg~i  166 (262)
                      -++..+.+.+|+...++  .+.+-.|..||+++-....     -+.      .......++.|.|.- ...+.+..|+.|
T Consensus       101 ~pi~~~v~~~D~t~s~v~~tsng~~v~~fD~~~fs~s~~~~~~pl~~s~ts~ek~vf~~~~~wnP~vp~n~av~l~dlsl  180 (1405)
T KOG3630|consen  101 IPIVIFVCFHDATDSVVVSTSNGEAVYSFDLEEFSESRYETTVPLKNSATSFEKPVFQLKNVWNPLVPLNSAVDLSDLSL  180 (1405)
T ss_pred             ccceEEEeccCCceEEEEEecCCceEEEEehHhhhhhhhhhccccccccchhccccccccccccCCccchhhhhccccch
Confidence            35666677777665443  3344478999997532111     111      122345678888843 346667788888


Q ss_pred             EEEeCCC--------------------CCccEEEEEcCCCeEEEEecCCCceeeEEeccCCceeEEEEEEecCCCeeEEc
Q 042146          167 RILDAST--------------------PNGKFILVGTLDNTLRLWNYSTRKILKTYSGYTNSKYCISSTFSVTNGKYIVS  226 (262)
Q Consensus       167 ~~~d~~~--------------------~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  226 (262)
                      ++..+..                    +.|+.++.|-..|++.-|-.. ++....+......                  
T Consensus       181 ~V~~~~~~~~~v~s~p~t~~~Tav~WSprGKQl~iG~nnGt~vQy~P~-leik~~ip~Pp~~------------------  241 (1405)
T KOG3630|consen  181 RVKSTKQLAQNVTSFPVTNSQTAVLWSPRGKQLFIGRNNGTEVQYEPS-LEIKSEIPEPPVE------------------  241 (1405)
T ss_pred             hhhhhhhhhhhhcccCcccceeeEEeccccceeeEecCCCeEEEeecc-cceeecccCCCcC------------------
Confidence            8777654                    566677777777766665432 3333333322111                  


Q ss_pred             cccceEEEEEcCCCCeEEEe
Q 042146          227 HRDPVISVASHPAKNIIASG  246 (262)
Q Consensus       227 ~~~~v~~~~~~p~~~~l~~~  246 (262)
                      -..+|.++.|-....+++.-
T Consensus       242 e~yrvl~v~Wl~t~eflvvy  261 (1405)
T KOG3630|consen  242 ENYRVLSVTWLSTQEFLVVY  261 (1405)
T ss_pred             CCcceeEEEEecceeEEEEe
Confidence            23567888887766666554

>PF14269 Arylsulfotran_2: Arylsulfotransferase (ASST)

Probab=94.76  E-value=1.5  Score=34.12  Aligned_cols=92  Identities=16%  Similarity=0.171  Sum_probs=61.2

Q ss_pred             ceEEEEEeCCCCEEEeecCCCeEEEEECCCCeeeeeeecCCCC-----eeeEEEccCCCEEEEEeCCCeEEEEeCCCCCc
Q 042146          102 YVFCINFNPQSNRIVSDTFNETIRIWDIKTGKCLKVLPAHSDP-----VTAIDFNRDGTMIVTSSYDGLYRILDASTPNG  176 (262)
Q Consensus       102 ~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~-----v~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~  176 (262)
                      -++++...++|.+|++.-.-..|.+.|.++++.+..+.+....     -...++-.+-+.+-.+..++.|.+||-.....
T Consensus       145 HiNsV~~~~~G~yLiS~R~~~~i~~I~~~tG~I~W~lgG~~~~df~~~~~~f~~QHdar~~~~~~~~~~IslFDN~~~~~  224 (299)
T PF14269_consen  145 HINSVDKDDDGDYLISSRNTSTIYKIDPSTGKIIWRLGGKRNSDFTLPATNFSWQHDARFLNESNDDGTISLFDNANSDF  224 (299)
T ss_pred             EeeeeeecCCccEEEEecccCEEEEEECCCCcEEEEeCCCCCCcccccCCcEeeccCCEEeccCCCCCEEEEEcCCCCCC
Confidence            3788888889999999998899999999999999998665221     11244444555555567888999998742111


Q ss_pred             cEEEEEcCCCeEEEEecCC
Q 042146          177 KFILVGTLDNTLRLWNYST  195 (262)
Q Consensus       177 ~~l~~~~~dg~i~i~d~~~  195 (262)
                        --.....+.+.-.|..+
T Consensus       225 --~~~~~s~~~v~~ld~~~  241 (299)
T PF14269_consen  225 --NGTEPSRGLVLELDPET  241 (299)
T ss_pred             --CCCcCCCceEEEEECCC
Confidence              11122334555566653

>PHA03098 kelch-like protein; Provisional

Probab=94.72  E-value=1.5  Score=37.35  Aligned_cols=61  Identities=18%  Similarity=0.199  Sum_probs=31.6

Q ss_pred             CCCEEEeecCC------CeEEEEECCCCeeeee--eecCCCCeeeEEEccCCCEEEEEeCC--------CeEEEEeCCC
Q 042146          111 QSNRIVSDTFN------ETIRIWDIKTGKCLKV--LPAHSDPVTAIDFNRDGTMIVTSSYD--------GLYRILDAST  173 (262)
Q Consensus       111 ~~~~l~~~~~d------g~i~vwd~~~~~~~~~--~~~~~~~v~~~~~~~~~~~l~~~~~d--------g~i~~~d~~~  173 (262)
                      +++..+.|+.+      ..+..||+.+++-...  +...... .+++ ..++..++.|+.+        ..+..||..+
T Consensus       389 ~~~iYv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~p~~r~~-~~~~-~~~~~iyv~GG~~~~~~~~~~~~v~~yd~~~  465 (534)
T PHA03098        389 NNLIYVIGGISKNDELLKTVECFSLNTNKWSKGSPLPISHYG-GCAI-YHDGKIYVIGGISYIDNIKVYNIVESYNPVT  465 (534)
T ss_pred             CCEEEEECCcCCCCcccceEEEEeCCCCeeeecCCCCccccC-ceEE-EECCEEEEECCccCCCCCcccceEEEecCCC
Confidence            56666666632      3588899876643211  1111111 1222 2355666666643        2378888765

>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A

Probab=94.70  E-value=1.8  Score=34.70  Aligned_cols=88  Identities=15%  Similarity=0.189  Sum_probs=45.3

Q ss_pred             ecCCCccceecccCCcceEEE-----EEeCCCCEEEeec-CCC--eEEEEECCCCeeeeeeecCCCCeeeEEEccCCCEE
Q 042146           86 DVPTATSLKTLIGHTNYVFCI-----NFNPQSNRIVSDT-FNE--TIRIWDIKTGKCLKVLPAHSDPVTAIDFNRDGTMI  157 (262)
Q Consensus        86 d~~~~~~~~~~~~~~~~v~~~-----~~~~~~~~l~~~~-~dg--~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l  157 (262)
                      |..+|..+..+.........+     +|.++|+.|+.++ .+|  .+.+.|+.+++..+.-.+.........++|+++.+
T Consensus        16 D~~TG~~VtrLT~~~~~~h~~YF~~~~ft~dG~kllF~s~~dg~~nly~lDL~t~~i~QLTdg~g~~~~g~~~s~~~~~~   95 (386)
T PF14583_consen   16 DPDTGHRVTRLTPPDGHSHRLYFYQNCFTDDGRKLLFASDFDGNRNLYLLDLATGEITQLTDGPGDNTFGGFLSPDDRAL   95 (386)
T ss_dssp             -TTT--EEEE-S-TTS-EE---TTS--B-TTS-EEEEEE-TTSS-EEEEEETTT-EEEE---SS-B-TTT-EE-TTSSEE
T ss_pred             CCCCCceEEEecCCCCcccceeecCCCcCCCCCEEEEEeccCCCcceEEEEcccCEEEECccCCCCCccceEEecCCCeE
Confidence            566777666665433322223     4667887765544 344  68888999887655443322223356677888877


Q ss_pred             EEEeCCCeEEEEeCCC
Q 042146          158 VTSSYDGLYRILDAST  173 (262)
Q Consensus       158 ~~~~~dg~i~~~d~~~  173 (262)
                      +-......|.-.|+.+
T Consensus        96 ~Yv~~~~~l~~vdL~T  111 (386)
T PF14583_consen   96 YYVKNGRSLRRVDLDT  111 (386)
T ss_dssp             EEEETTTEEEEEETTT
T ss_pred             EEEECCCeEEEEECCc
Confidence            6666667888888887

>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2

Probab=94.56  E-value=1.5  Score=33.17  Aligned_cols=103  Identities=18%  Similarity=0.203  Sum_probs=67.0

Q ss_pred             cceEEEEEeCCCCEEEeecCCC--eEEEEECCCCeeeeeeecCC-CCeeeEEEccCCCEEEEEeCCCeEEEEeCCC----
Q 042146          101 NYVFCINFNPQSNRIVSDTFNE--TIRIWDIKTGKCLKVLPAHS-DPVTAIDFNRDGTMIVTSSYDGLYRILDAST----  173 (262)
Q Consensus       101 ~~v~~~~~~~~~~~l~~~~~dg--~i~vwd~~~~~~~~~~~~~~-~~v~~~~~~~~~~~l~~~~~dg~i~~~d~~~----  173 (262)
                      .-...+.|..++.++-+.+.-|  .|+.+|+.+++......-.. ----.++.. +.+...-.=.++...+||..+    
T Consensus        45 aFTQGL~~~~~g~LyESTG~yG~S~l~~~d~~tg~~~~~~~l~~~~FgEGit~~-~d~l~qLTWk~~~~f~yd~~tl~~~  123 (264)
T PF05096_consen   45 AFTQGLEFLDDGTLYESTGLYGQSSLRKVDLETGKVLQSVPLPPRYFGEGITIL-GDKLYQLTWKEGTGFVYDPNTLKKI  123 (264)
T ss_dssp             -EEEEEEEEETTEEEEEECSTTEEEEEEEETTTSSEEEEEE-TTT--EEEEEEE-TTEEEEEESSSSEEEEEETTTTEEE
T ss_pred             ccCccEEecCCCEEEEeCCCCCcEEEEEEECCCCcEEEEEECCccccceeEEEE-CCEEEEEEecCCeEEEEccccceEE
Confidence            3466788877888877777666  79999999998766553322 112223333 223333344678888888876    


Q ss_pred             -------------CCccEEEEEcCCCeEEEEecCCCceeeEEec
Q 042146          174 -------------PNGKFILVGTLDNTLRLWNYSTRKILKTYSG  204 (262)
Q Consensus       174 -------------~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~  204 (262)
                                   .+++.|+.......|+++|..+.+....+..
T Consensus       124 ~~~~y~~EGWGLt~dg~~Li~SDGS~~L~~~dP~~f~~~~~i~V  167 (264)
T PF05096_consen  124 GTFPYPGEGWGLTSDGKRLIMSDGSSRLYFLDPETFKEVRTIQV  167 (264)
T ss_dssp             EEEE-SSS--EEEECSSCEEEE-SSSEEEEE-TTT-SEEEEEE-
T ss_pred             EEEecCCcceEEEcCCCEEEEECCccceEEECCcccceEEEEEE
Confidence                         5778888888888999999998887777654

3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.

>TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family

Probab=94.03  E-value=4.2  Score=36.24  Aligned_cols=94  Identities=16%  Similarity=0.209  Sum_probs=63.1

Q ss_pred             CCCEEEeecCCCeEEEEECCCCeeeeeeecCCCC--------eeeEEEcc----------------CCCEEEEEeCCCeE
Q 042146          111 QSNRIVSDTFNETIRIWDIKTGKCLKVLPAHSDP--------VTAIDFNR----------------DGTMIVTSSYDGLY  166 (262)
Q Consensus       111 ~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~--------v~~~~~~~----------------~~~~l~~~~~dg~i  166 (262)
                      .+..++.++.++.|.-.|.++++.+..+......        ...+.+..                .+..++.++.|+.+
T Consensus       193 vgg~lYv~t~~~~V~ALDa~TGk~lW~~d~~~~~~~~~~~~~cRGvay~~~p~~~~~~~~~~~p~~~~~rV~~~T~Dg~L  272 (764)
T TIGR03074       193 VGDTLYLCTPHNKVIALDAATGKEKWKFDPKLKTEAGRQHQTCRGVSYYDAPAAAAGPAAPAAPADCARRIILPTSDARL  272 (764)
T ss_pred             ECCEEEEECCCCeEEEEECCCCcEEEEEcCCCCcccccccccccceEEecCCcccccccccccccccCCEEEEecCCCeE
Confidence            3667777888899999999999998887542211        11122211                23467777778877


Q ss_pred             EEEeCCC----------------------------------CCccEEEEEcC----------CCeEEEEecCCCceeeEE
Q 042146          167 RILDAST----------------------------------PNGKFILVGTL----------DNTLRLWNYSTRKILKTY  202 (262)
Q Consensus       167 ~~~d~~~----------------------------------~~~~~l~~~~~----------dg~i~i~d~~~~~~~~~~  202 (262)
                      .-.|..+                                  -.+..+++|+.          +|.|+-+|.++|+++..+
T Consensus       273 iALDA~TGk~~W~fg~~G~vdl~~~~g~~~~g~~~~ts~P~V~~g~VIvG~~v~d~~~~~~~~G~I~A~Da~TGkl~W~~  352 (764)
T TIGR03074       273 IALDADTGKLCEDFGNNGTVDLTAGMGTTPPGYYYPTSPPLVAGTTVVIGGRVADNYSTDEPSGVIRAFDVNTGALVWAW  352 (764)
T ss_pred             EEEECCCCCEEEEecCCCceeeecccCcCCCcccccccCCEEECCEEEEEecccccccccCCCcEEEEEECCCCcEeeEE
Confidence            7666554                                  01345666642          688999999999999887


Q ss_pred             ec
Q 042146          203 SG  204 (262)
Q Consensus       203 ~~  204 (262)
                      ..
T Consensus       353 ~~  354 (764)
T TIGR03074       353 DP  354 (764)
T ss_pred             ec
Confidence            64

This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases.

>PF11715 Nup160: Nucleoporin Nup120/160; InterPro: IPR021717 Nup120 is conserved from fungi to plants to humans, and is homologous with the Nup160 of vertebrates

Probab=93.87  E-value=0.61  Score=39.80  Aligned_cols=38  Identities=21%  Similarity=0.551  Sum_probs=28.6

Q ss_pred             cceEEEEEeC----CCCEEEeecCCCeEEEEECCCCeeeeee
Q 042146          101 NYVFCINFNP----QSNRIVSDTFNETIRIWDIKTGKCLKVL  138 (262)
Q Consensus       101 ~~v~~~~~~~----~~~~l~~~~~dg~i~vwd~~~~~~~~~~  138 (262)
                      ..+..+++++    +..++++.+.|+++++||+.+++++...
T Consensus       215 ~~~~~~~~~~~~~~~~~~l~tl~~D~~LRiW~l~t~~~~~~~  256 (547)
T PF11715_consen  215 SVAASLAVSSSEINDDTFLFTLSRDHTLRIWSLETGQCLATI  256 (547)
T ss_dssp             --EEEEEE-----ETTTEEEEEETTSEEEEEETTTTCEEEEE
T ss_pred             CccceEEEecceeCCCCEEEEEeCCCeEEEEECCCCeEEEEe
Confidence            3455566665    7789999999999999999999986654

The nuclear core complex, or NPC, mediates macromolecular transport across the nuclear envelope. Deletion of the NUP120 gene causes clustering of NPCs at one side of the nuclear envelope, moderate nucleolar fragmentation and slower cell growth []. The vertebrate NPC is estimated to contain between 30 and 60 different proteins. most of which are not known. Two important ones in creating the nucleoporin basket are Nup98 and Nup153, and Nup120, in conjunction with Nup 133, interacts with these two and itself plays a role in mRNA export []. Nup160, Nup133, Nup96, and Nup107 are all targets of phosphorylation. The phosphorylation sites are clustered mainly at the N-terminal regions of these proteins, which are predicted to be natively disordered. The entire Nup107-160 subcomplex is stable throughout the cell cycle, thus it seems unlikely that phosphorylation affects interactions within the Nup107-160 subcomplex, but rather that it regulates the association of the subcomplex with the NPC and other proteins []. ; PDB: 3F7F_D 3H7N_D 3HXR_A.

>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs

Probab=93.86  E-value=4.4  Score=35.84  Aligned_cols=79  Identities=16%  Similarity=0.179  Sum_probs=54.6

Q ss_pred             cceEEEEEeCCCCEEEeecCCCeEEEEECCC---------Cee---eeee--------ecCCCCeeeEEEccC---CCEE
Q 042146          101 NYVFCINFNPQSNRIVSDTFNETIRIWDIKT---------GKC---LKVL--------PAHSDPVTAIDFNRD---GTMI  157 (262)
Q Consensus       101 ~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~---------~~~---~~~~--------~~~~~~v~~~~~~~~---~~~l  157 (262)
                      -.|..+.++|+|.+++..+..|...+.=.+.         ++.   .+.+        ..+...|..+.|+|.   +.+|
T Consensus        85 f~v~~i~~n~~g~~lal~G~~~v~V~~LP~r~g~~~~~~~g~~~i~Crt~~v~~~~~~~~~~~~i~qv~WhP~s~~~~~l  164 (717)
T PF10168_consen   85 FEVHQISLNPTGSLLALVGPRGVVVLELPRRWGKNGEFEDGKKEINCRTVPVDERFFTSNSSLEIKQVRWHPWSESDSHL  164 (717)
T ss_pred             eeEEEEEECCCCCEEEEEcCCcEEEEEeccccCccccccCCCcceeEEEEEechhhccCCCCceEEEEEEcCCCCCCCeE
Confidence            4688999999999999888766544432221         111   1111        123457899999995   5789


Q ss_pred             EEEeCCCeEEEEeCCCCCccEE
Q 042146          158 VTSSYDGLYRILDASTPNGKFI  179 (262)
Q Consensus       158 ~~~~~dg~i~~~d~~~~~~~~l  179 (262)
                      ++-..|+++++||+..+.....
T Consensus       165 ~vLtsdn~lR~y~~~~~~~p~~  186 (717)
T PF10168_consen  165 VVLTSDNTLRLYDISDPQHPWQ  186 (717)
T ss_pred             EEEecCCEEEEEecCCCCCCeE
Confidence            9999999999999987555443

It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].

>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=93.66  E-value=2.5  Score=32.41  Aligned_cols=76  Identities=14%  Similarity=0.282  Sum_probs=55.4

Q ss_pred             cCCcceEEEEEeCCCCEEEeecCCCeEEEEECCCCeeeeeeecC-CCCeeeEEEccCCCEEEEEeCCCeEEEEeCCC
Q 042146           98 GHTNYVFCINFNPQSNRIVSDTFNETIRIWDIKTGKCLKVLPAH-SDPVTAIDFNRDGTMIVTSSYDGLYRILDAST  173 (262)
Q Consensus        98 ~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~-~~~v~~~~~~~~~~~l~~~~~dg~i~~~d~~~  173 (262)
                      +....+.++.|+|+.+.|++......-.|+=-.+|+.++.+.-. -.....+++..++.+.++--.++.+.++.+..
T Consensus        83 g~~~nvS~LTynp~~rtLFav~n~p~~iVElt~~GdlirtiPL~g~~DpE~Ieyig~n~fvi~dER~~~l~~~~vd~  159 (316)
T COG3204          83 GETANVSSLTYNPDTRTLFAVTNKPAAIVELTKEGDLIRTIPLTGFSDPETIEYIGGNQFVIVDERDRALYLFTVDA  159 (316)
T ss_pred             cccccccceeeCCCcceEEEecCCCceEEEEecCCceEEEecccccCChhHeEEecCCEEEEEehhcceEEEEEEcC
Confidence            44455999999999998888887777777766678888877431 22346678887777777777788888776553

>KOG1900 consensus Nuclear pore complex, Nup155 component (D Nup154, sc Nup157/Nup170) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=93.58  E-value=1  Score=41.33  Aligned_cols=33  Identities=15%  Similarity=0.296  Sum_probs=30.6

Q ss_pred             cccceEEEEEcCCCCeEEEeeecCCCcEEEEeecc
Q 042146          227 HRDPVISVASHPAKNIIASGALDNDRTMKIWTQEK  261 (262)
Q Consensus       227 ~~~~v~~~~~~p~~~~l~~~~~d~d~~i~iw~~~~  261 (262)
                      +.++|..++.....+.+.+-+  +.|+|++|++..
T Consensus       241 ~~dpI~qi~ID~SR~IlY~ls--ek~~v~~Y~i~~  273 (1311)
T KOG1900|consen  241 SKDPIRQITIDNSRNILYVLS--EKGTVSAYDIGG  273 (1311)
T ss_pred             CCCcceeeEeccccceeeeec--cCceEEEEEccC
Confidence            788999999999999999999  899999999875

>COG3823 Glutamine cyclotransferase [Posttranslational modification, protein turnover, chaperones]

Probab=93.37  E-value=2.2  Score=30.96  Aligned_cols=153  Identities=12%  Similarity=0.053  Sum_probs=77.6

Q ss_pred             eEEEEecCCCccceecccCCcceEEEEEeCCCCEEE-eecCCCeEEEEECCCCeeeeeeecCCCCeeeEEEccCCCEEEE
Q 042146           81 TIRLWDVPTATSLKTLIGHTNYVFCINFNPQSNRIV-SDTFNETIRIWDIKTGKCLKVLPAHSDPVTAIDFNRDGTMIVT  159 (262)
Q Consensus        81 ~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~-~~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~  159 (262)
                      .|++||+.+++.+.+..-....+..=-...-+..+. -.-.+|.-..+|.++-+++..+. ..+.-+.++.  |+..|+.
T Consensus        69 ~ir~~~L~~gq~~~s~~l~~~~~FgEGit~~gd~~y~LTw~egvaf~~d~~t~~~lg~~~-y~GeGWgLt~--d~~~Lim  145 (262)
T COG3823          69 KIRVSDLTTGQEIFSEKLAPDTVFGEGITKLGDYFYQLTWKEGVAFKYDADTLEELGRFS-YEGEGWGLTS--DDKNLIM  145 (262)
T ss_pred             eeEEEeccCceEEEEeecCCccccccceeeccceEEEEEeccceeEEEChHHhhhhcccc-cCCcceeeec--CCcceEe
Confidence            577778877776654322111111111111133332 23457888888988877776664 3444455553  4555666


Q ss_pred             EeCCCeEEEEeCCC------------------------CCccEEEEEcCCCeEEEEecCCCceeeEEeccCCceeEEEEE
Q 042146          160 SSYDGLYRILDAST------------------------PNGKFILVGTLDNTLRLWNYSTRKILKTYSGYTNSKYCISST  215 (262)
Q Consensus       160 ~~~dg~i~~~d~~~------------------------~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~  215 (262)
                      ++...+++.-|..+                        -+|...+--=.+..|...+..+|+.+.-+....-.       
T Consensus       146 sdGsatL~frdP~tfa~~~~v~VT~~g~pv~~LNELE~VdG~lyANVw~t~~I~rI~p~sGrV~~widlS~L~-------  218 (262)
T COG3823         146 SDGSATLQFRDPKTFAELDTVQVTDDGVPVSKLNELEWVDGELYANVWQTTRIARIDPDSGRVVAWIDLSGLL-------  218 (262)
T ss_pred             eCCceEEEecCHHHhhhcceEEEEECCeecccccceeeeccEEEEeeeeecceEEEcCCCCcEEEEEEccCCc-------
Confidence            66666666655443                        23333332223333444555666665554421110       


Q ss_pred             EecCCCeeEEccccceEEEEEcCCCC-eEEEe
Q 042146          216 FSVTNGKYIVSHRDPVISVASHPAKN-IIASG  246 (262)
Q Consensus       216 ~~~~~~~~~~~~~~~v~~~~~~p~~~-~l~~~  246 (262)
                         ..-.....+..-.+.+++.|++. +++||
T Consensus       219 ---~~~~~~~~~~nvlNGIA~~~~~~r~~iTG  247 (262)
T COG3823         219 ---KELNLDKSNDNVLNGIAHDPQQDRFLITG  247 (262)
T ss_pred             ---hhcCccccccccccceeecCcCCeEEEec
Confidence               00000111556778999999885 55554

>KOG2377 consensus Uncharacterized conserved protein [Function unknown]

Probab=93.25  E-value=1.2  Score=36.32  Aligned_cols=106  Identities=14%  Similarity=0.182  Sum_probs=66.3

Q ss_pred             CcCceEEEEEccCCCeEEEecCCCeEEEeecCCCCCCCCCCCCCCccccCCccccccceeEEEEecCCCccceecccCCc
Q 042146           22 HLRAVSYVKFSHDGRLLTSSSAEKTLLTYSLSSISNFDSTPPSPLQKFTGHEQGISDLATIRLWDVPTATSLKTLIGHTN  101 (262)
Q Consensus        22 h~~~v~~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~i~v~d~~~~~~~~~~~~~~~  101 (262)
                      ..++|.++.||+|.+.||+--.|..|.+.+.....                               ...+...+.+....
T Consensus        65 d~G~I~SIkFSlDnkilAVQR~~~~v~f~nf~~d~-------------------------------~~l~~~~~ck~k~~  113 (657)
T KOG2377|consen   65 DKGEIKSIKFSLDNKILAVQRTSKTVDFCNFIPDN-------------------------------SQLEYTQECKTKNA  113 (657)
T ss_pred             CCCceeEEEeccCcceEEEEecCceEEEEecCCCc-------------------------------hhhHHHHHhccCcc
Confidence            46799999999999999999999998888653310                               01111222233345


Q ss_pred             ceEEEEEeCCCCEEEeecCCCeEEEEECCC-CeeeeeeecCCCCeeeEEEccCCCEEEEE
Q 042146          102 YVFCINFNPQSNRIVSDTFNETIRIWDIKT-GKCLKVLPAHSDPVTAIDFNRDGTMIVTS  160 (262)
Q Consensus       102 ~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~-~~~~~~~~~~~~~v~~~~~~~~~~~l~~~  160 (262)
                      .|....|..+ .-+|..+..| +-+|.... .+.++..+.|+..|.-..|.++.+.++-+
T Consensus       114 ~IlGF~W~~s-~e~A~i~~~G-~e~y~v~pekrslRlVks~~~nvnWy~yc~et~v~LL~  171 (657)
T KOG2377|consen  114 NILGFCWTSS-TEIAFITDQG-IEFYQVLPEKRSLRLVKSHNLNVNWYMYCPETAVILLS  171 (657)
T ss_pred             eeEEEEEecC-eeEEEEecCC-eEEEEEchhhhhhhhhhhcccCccEEEEccccceEeee
Confidence            5788888765 4444444344 34444322 23345556678888888888887754433

>PF08728 CRT10: CRT10; InterPro: IPR014839 CRT10 is a transcriptional regulator of ribonucleotide reductase (RNR) genes []

Probab=93.19  E-value=5.5  Score=34.92  Aligned_cols=31  Identities=6%  Similarity=0.044  Sum_probs=23.0

Q ss_pred             cccceEEEEEcCCC-----C-eEEEeeecCCCcEEEEee
Q 042146          227 HRDPVISVASHPAK-----N-IIASGALDNDRTMKIWTQ  259 (262)
Q Consensus       227 ~~~~v~~~~~~p~~-----~-~l~~~~~d~d~~i~iw~~  259 (262)
                      +...|.+|+|-++.     . .|++++  =.|.+-+|++
T Consensus       209 ~~hNIP~VSFl~~~~d~~G~v~v~a~d--I~G~v~~~~I  245 (717)
T PF08728_consen  209 HSHNIPNVSFLDDDLDPNGHVKVVATD--ISGEVWTFKI  245 (717)
T ss_pred             cccCCCeeEeecCCCCCccceEEEEEe--ccCcEEEEEE
Confidence            56678899997643     2 566666  7789988887

RNR catalyses the rate limiting step in dNTP synthesis. Mutations in CRT10 have been shown to enhance hydroxyurea resistance [].

>TIGR02276 beta_rpt_yvtn 40-residue YVTN family beta-propeller repeat

Probab=93.10  E-value=0.61  Score=23.72  Aligned_cols=40  Identities=15%  Similarity=0.298  Sum_probs=27.2

Q ss_pred             CCCCEEEee-cCCCeEEEEECCCCeeeeeeecCCCCeeeEEE
Q 042146          110 PQSNRIVSD-TFNETIRIWDIKTGKCLKVLPAHSDPVTAIDF  150 (262)
Q Consensus       110 ~~~~~l~~~-~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~  150 (262)
                      |++++|+++ ..++.|.++|+.+++.+..+.... .-..++|
T Consensus         1 pd~~~lyv~~~~~~~v~~id~~~~~~~~~i~vg~-~P~~i~~   41 (42)
T TIGR02276         1 PDGTKLYVTNSGSNTVSVIDTATNKVIATIPVGG-YPFGVAV   41 (42)
T ss_pred             CCCCEEEEEeCCCCEEEEEECCCCeEEEEEECCC-CCceEEe
Confidence            567766554 457899999999888887776533 2344544

This repeat of about 40 amino acids is found in up to 14 copies per protein. Archaea Methanosarcina mazei and Methanosarcina acetivorans each have over 10 genes that encode tandem copies of this repeat, which is also found in other species. PSIPRED predicts with high confidence that each 40-residue repeats contains four beta strands. This model overlaps somewhat with the NHL repeat (Pfam pfam01436) and also shows sequence similarity to the WD domain, G-beta repeat (Pfam pfam00400).

>PF12768 Rax2: Cortical protein marker for cell polarity

Probab=92.99  E-value=3.1  Score=32.09  Aligned_cols=77  Identities=19%  Similarity=0.267  Sum_probs=50.7

Q ss_pred             eEEEEecCCCccceecccCCcceEEEEEeCCCCEEEeec------CCCeEEEEECCCCeeeeeeec-----CCCCeeeEE
Q 042146           81 TIRLWDVPTATSLKTLIGHTNYVFCINFNPQSNRIVSDT------FNETIRIWDIKTGKCLKVLPA-----HSDPVTAID  149 (262)
Q Consensus        81 ~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~------~dg~i~vwd~~~~~~~~~~~~-----~~~~v~~~~  149 (262)
                      .|++||..+.+....-.+-.+.|+.|.|..+.+++++|.      ....+..||+.+..- ..+..     -.++|..+.
T Consensus        17 ~lC~yd~~~~qW~~~g~~i~G~V~~l~~~~~~~Llv~G~ft~~~~~~~~la~yd~~~~~w-~~~~~~~s~~ipgpv~a~~   95 (281)
T PF12768_consen   17 GLCLYDTDNSQWSSPGNGISGTVTDLQWASNNQLLVGGNFTLNGTNSSNLATYDFKNQTW-SSLGGGSSNSIPGPVTALT   95 (281)
T ss_pred             EEEEEECCCCEeecCCCCceEEEEEEEEecCCEEEEEEeeEECCCCceeEEEEecCCCee-eecCCcccccCCCcEEEEE
Confidence            588888877665554455668899999986666666654      455788899876643 23322     236788887


Q ss_pred             Ecc-CCCEEE
Q 042146          150 FNR-DGTMIV  158 (262)
Q Consensus       150 ~~~-~~~~l~  158 (262)
                      +.. ++..+.
T Consensus        96 ~~~~d~~~~~  105 (281)
T PF12768_consen   96 FISNDGSNFW  105 (281)
T ss_pred             eeccCCceEE
Confidence            754 444344

>COG5276 Uncharacterized conserved protein [Function unknown]

Probab=92.89  E-value=3.4  Score=31.76  Aligned_cols=93  Identities=17%  Similarity=0.259  Sum_probs=59.1

Q ss_pred             cceEEEEEeCCCCEEEeecCCCeEEEEECCCCeeeeeeec--CCCCeeeEEEccCCCEEEEEeCCCeEEEEeCCCC----
Q 042146          101 NYVFCINFNPQSNRIVSDTFNETIRIWDIKTGKCLKVLPA--HSDPVTAIDFNRDGTMIVTSSYDGLYRILDASTP----  174 (262)
Q Consensus       101 ~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~--~~~~v~~~~~~~~~~~l~~~~~dg~i~~~d~~~~----  174 (262)
                      .-+..+.++  +++++.+..+.-+++.|+.+......+..  -.+--.++..  .|++..++..|.-+.+.|+..|    
T Consensus        87 ~l~~Dv~vs--e~yvyvad~ssGL~IvDIS~P~sP~~~~~lnt~gyaygv~v--sGn~aYVadlddgfLivdvsdpssP~  162 (370)
T COG5276          87 DLFADVRVS--EEYVYVADWSSGLRIVDISTPDSPTLIGFLNTDGYAYGVYV--SGNYAYVADLDDGFLIVDVSDPSSPQ  162 (370)
T ss_pred             hhhheeEec--ccEEEEEcCCCceEEEeccCCCCcceeccccCCceEEEEEe--cCCEEEEeeccCcEEEEECCCCCCce
Confidence            345566665  66777777777899999976543333221  1133344444  5889999997777888898873    


Q ss_pred             -----------------CccEEEEEcCCCeEEEEecCCCc
Q 042146          175 -----------------NGKFILVGTLDNTLRLWNYSTRK  197 (262)
Q Consensus       175 -----------------~~~~l~~~~~dg~i~i~d~~~~~  197 (262)
                                       .|++-..+..|+-+.+-|+....
T Consensus       163 lagrya~~~~d~~~v~ISGn~AYvA~~d~GL~ivDVSnp~  202 (370)
T COG5276         163 LAGRYALPGGDTHDVAISGNYAYVAWRDGGLTIVDVSNPH  202 (370)
T ss_pred             eeeeeccCCCCceeEEEecCeEEEEEeCCCeEEEEccCCC
Confidence                             24455555567777777776543

>PF11715 Nup160: Nucleoporin Nup120/160; InterPro: IPR021717 Nup120 is conserved from fungi to plants to humans, and is homologous with the Nup160 of vertebrates

Probab=92.85  E-value=1.5  Score=37.39  Aligned_cols=31  Identities=29%  Similarity=0.514  Sum_probs=26.7

Q ss_pred             CccEEEEEcCCCeEEEEecCCCceeeEEecc
Q 042146          175 NGKFILVGTLDNTLRLWNYSTRKILKTYSGY  205 (262)
Q Consensus       175 ~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~  205 (262)
                      +..++++-+.|+.+|+||+.+++++.+..-.
T Consensus       229 ~~~~l~tl~~D~~LRiW~l~t~~~~~~~~~~  259 (547)
T PF11715_consen  229 DDTFLFTLSRDHTLRIWSLETGQCLATIDLL  259 (547)
T ss_dssp             TTTEEEEEETTSEEEEEETTTTCEEEEEETT
T ss_pred             CCCEEEEEeCCCeEEEEECCCCeEEEEeccc
Confidence            6678999999999999999999997776543

The nuclear core complex, or NPC, mediates macromolecular transport across the nuclear envelope. Deletion of the NUP120 gene causes clustering of NPCs at one side of the nuclear envelope, moderate nucleolar fragmentation and slower cell growth []. The vertebrate NPC is estimated to contain between 30 and 60 different proteins. most of which are not known. Two important ones in creating the nucleoporin basket are Nup98 and Nup153, and Nup120, in conjunction with Nup 133, interacts with these two and itself plays a role in mRNA export []. Nup160, Nup133, Nup96, and Nup107 are all targets of phosphorylation. The phosphorylation sites are clustered mainly at the N-terminal regions of these proteins, which are predicted to be natively disordered. The entire Nup107-160 subcomplex is stable throughout the cell cycle, thus it seems unlikely that phosphorylation affects interactions within the Nup107-160 subcomplex, but rather that it regulates the association of the subcomplex with the NPC and other proteins []. ; PDB: 3F7F_D 3H7N_D 3HXR_A.

>PF12657 TFIIIC_delta: Transcription factor IIIC subunit delta N-term; InterPro: IPR024761 This entry represents a domain found towards the N terminus of the 90 kDa subunit of transcription factor IIIC (also known as subunit 9 in yeast [])

Probab=92.79  E-value=2.1  Score=30.24  Aligned_cols=31  Identities=13%  Similarity=0.175  Sum_probs=24.9

Q ss_pred             cceEEEEEeCCC------CEEEeecCCCeEEEEECCC
Q 042146          101 NYVFCINFNPQS------NRIVSDTFNETIRIWDIKT  131 (262)
Q Consensus       101 ~~v~~~~~~~~~------~~l~~~~~dg~i~vwd~~~  131 (262)
                      ..+..++|+|.|      -+|++.+.+|.|.+|....
T Consensus        86 ~~vv~~aWSP~Gl~~~~rClLavLTs~~~l~l~~~~~  122 (173)
T PF12657_consen   86 SQVVSAAWSPSGLGPNGRCLLAVLTSNGRLSLYGPPG  122 (173)
T ss_pred             ccEEEEEECCCCCCCCCceEEEEEcCCCeEEEEecCC
Confidence            378999999933      4688889999999998653

The whole subunit is involved in RNA polymerase III-mediated transcription. It is possible that this N-terminal domain interacts with TFIIIC subunit 8 [].

>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]

Probab=92.59  E-value=5.2  Score=34.88  Aligned_cols=47  Identities=17%  Similarity=0.171  Sum_probs=33.2

Q ss_pred             eeeec-ccccceecccCcCceEEEEEccCCCeEEEecCCCeEEEeecCC
Q 042146            7 LESFR-PYTLTQTLNGHLRAVSYVKFSHDGRLLTSSSAEKTLLTYSLSS   54 (262)
Q Consensus         7 i~~~~-~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~iw~~~~   54 (262)
                      |++|. .++++..+....+++-.|.|+.+.. |+....+|++.+|++-.
T Consensus        66 I~If~~sG~lL~~~~w~~~~lI~mgWs~~ee-LI~v~k~g~v~Vy~~~g  113 (829)
T KOG2280|consen   66 IRIFNISGQLLGRILWKHGELIGMGWSDDEE-LICVQKDGTVHVYGLLG  113 (829)
T ss_pred             EEEEeccccchHHHHhcCCCeeeecccCCce-EEEEeccceEEEeecch
Confidence            44554 3445555544455888999988765 66678999999999755

>KOG3616 consensus Selective LIM binding factor [Transcription]

Probab=92.37  E-value=2.8  Score=36.58  Aligned_cols=33  Identities=3%  Similarity=0.125  Sum_probs=27.7

Q ss_pred             cCceEEEEEccCCCeEEEecCCCeEEEeecCCC
Q 042146           23 LRAVSYVKFSHDGRLLTSSSAEKTLLTYSLSSI   55 (262)
Q Consensus        23 ~~~v~~~~~~~~~~~l~s~~~d~~i~iw~~~~~   55 (262)
                      ..-++++.-+|.+..++.+..||.|++|+....
T Consensus        14 ~e~~~aiqshp~~~s~v~~~~d~si~lfn~~~r   46 (1636)
T KOG3616|consen   14 DEFTTAIQSHPGGQSFVLAHQDGSIILFNFIPR   46 (1636)
T ss_pred             cceeeeeeecCCCceEEEEecCCcEEEEeeccc
Confidence            455778888899999999999999999987553

>PHA02790 Kelch-like protein; Provisional

Probab=92.28  E-value=6.1  Score=33.21  Aligned_cols=58  Identities=7%  Similarity=-0.168  Sum_probs=30.0

Q ss_pred             CCCEEEeecCCC---eEEEEECCCCeeee--eeecCCCCeeeEEEccCCCEEEEEeCCCeEEEEeCCC
Q 042146          111 QSNRIVSDTFNE---TIRIWDIKTGKCLK--VLPAHSDPVTAIDFNRDGTMIVTSSYDGLYRILDAST  173 (262)
Q Consensus       111 ~~~~l~~~~~dg---~i~vwd~~~~~~~~--~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~d~~~  173 (262)
                      +++..+.|+.++   .+..||+++.+-..  .+....... +++ .-++...+.|+   .+..||..+
T Consensus       362 ~g~IYviGG~~~~~~~ve~ydp~~~~W~~~~~m~~~r~~~-~~~-~~~~~IYv~GG---~~e~ydp~~  424 (480)
T PHA02790        362 NNVIYVIGGHSETDTTTEYLLPNHDQWQFGPSTYYPHYKS-CAL-VFGRRLFLVGR---NAEFYCESS  424 (480)
T ss_pred             CCEEEEecCcCCCCccEEEEeCCCCEEEeCCCCCCccccc-eEE-EECCEEEEECC---ceEEecCCC
Confidence            577777777553   47788987664322  111111111 221 23455556553   466777665

>KOG1900 consensus Nuclear pore complex, Nup155 component (D Nup154, sc Nup157/Nup170) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=92.25  E-value=6.8  Score=36.45  Aligned_cols=71  Identities=18%  Similarity=0.438  Sum_probs=50.6

Q ss_pred             CcceEEEEEeCCCCEEEeecCCCeEEEEEC----CCC---e-e----------------eeeee-cCCCCeeeEEEccCC
Q 042146          100 TNYVFCINFNPQSNRIVSDTFNETIRIWDI----KTG---K-C----------------LKVLP-AHSDPVTAIDFNRDG  154 (262)
Q Consensus       100 ~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~----~~~---~-~----------------~~~~~-~~~~~v~~~~~~~~~  154 (262)
                      ...|+|+....+|+.+++|- ||  .+|.+    ..+   + +                +..+. .+..+|..++.....
T Consensus       178 g~~V~~I~~t~nGRIF~~G~-dg--~lyEl~Yq~~~gWf~~rc~Kiclt~s~ls~lvPs~~~~~~~~~dpI~qi~ID~SR  254 (1311)
T KOG1900|consen  178 GVSVNCITYTENGRIFFAGR-DG--NLYELVYQAEDGWFGSRCRKICLTKSVLSSLVPSLLSVPGSSKDPIRQITIDNSR  254 (1311)
T ss_pred             CceEEEEEeccCCcEEEeec-CC--CEEEEEEeccCchhhcccccccCchhHHHHhhhhhhcCCCCCCCcceeeEecccc
Confidence            45688888777888777766 45  44543    221   1 1                11222 456799999999888


Q ss_pred             CEEEEEeCCCeEEEEeCCC
Q 042146          155 TMIVTSSYDGLYRILDAST  173 (262)
Q Consensus       155 ~~l~~~~~dg~i~~~d~~~  173 (262)
                      ..+.+-+..|+|..||+..
T Consensus       255 ~IlY~lsek~~v~~Y~i~~  273 (1311)
T KOG1900|consen  255 NILYVLSEKGTVSAYDIGG  273 (1311)
T ss_pred             ceeeeeccCceEEEEEccC
Confidence            8999999999999999876

>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family

Probab=92.14  E-value=6.8  Score=33.40  Aligned_cols=59  Identities=15%  Similarity=0.175  Sum_probs=35.5

Q ss_pred             eEEEEecCCCccceecccCC-cceEEEEEeC--CCCEEEeec------CCCeEEEEECCCCeeeeeee
Q 042146           81 TIRLWDVPTATSLKTLIGHT-NYVFCINFNP--QSNRIVSDT------FNETIRIWDIKTGKCLKVLP  139 (262)
Q Consensus        81 ~i~v~d~~~~~~~~~~~~~~-~~v~~~~~~~--~~~~l~~~~------~dg~i~vwd~~~~~~~~~~~  139 (262)
                      .|.-.|.++++.+....... ..-..+.-.|  .+..++++.      .+|.|.-+|.++++.+..+.
T Consensus       131 ~l~ALDa~TGk~~W~~~~~~~~~~~~~tssP~v~~g~Vivg~~~~~~~~~G~v~AlD~~TG~~lW~~~  198 (527)
T TIGR03075       131 RLVALDAKTGKVVWSKKNGDYKAGYTITAAPLVVKGKVITGISGGEFGVRGYVTAYDAKTGKLVWRRY  198 (527)
T ss_pred             EEEEEECCCCCEEeecccccccccccccCCcEEECCEEEEeecccccCCCcEEEEEECCCCceeEecc
Confidence            67888888898877654211 0001111122  133455543      26899999999999887754

This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.

>KOG2247 consensus WD40 repeat-containing protein [General function prediction only]

Probab=92.13  E-value=0.052  Score=44.00  Aligned_cols=142  Identities=16%  Similarity=0.241  Sum_probs=87.3

Q ss_pred             CcCceEEEEEccCCCeEEEecCCCeEEEeecCCCCCCCCCCCCCCccc----cCCcccc--ccceeEEEEecCCCcccee
Q 042146           22 HLRAVSYVKFSHDGRLLTSSSAEKTLLTYSLSSISNFDSTPPSPLQKF----TGHEQGI--SDLATIRLWDVPTATSLKT   95 (262)
Q Consensus        22 h~~~v~~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~----~~~~~~v--~~~~~i~v~d~~~~~~~~~   95 (262)
                      |-..-....|-|++.-++.++.+-.+..||-..........+.....+    .+....+  ...+.+.+||+.+......
T Consensus        33 alv~pi~~~w~~e~~nlavaca~tiv~~YD~agq~~le~n~tg~aldm~wDkegdvlavlAek~~piylwd~n~eytqqL  112 (615)
T KOG2247|consen   33 ALVGPIIHRWRPEGHNLAVACANTIVIYYDKAGQVILELNPTGKALDMAWDKEGDVLAVLAEKTGPIYLWDVNSEYTQQL  112 (615)
T ss_pred             hccccceeeEecCCCceehhhhhhHHHhhhhhcceecccCCchhHhhhhhccccchhhhhhhcCCCeeechhhhhhHHHH
Confidence            444445667888877799999999999998655333222222221111    1111111  1112689999865432211


Q ss_pred             cccCCcceEEEEEeCCCCEEEeecCCCeEEEEECCCCeeeeeeecCCCCeeeEEEccCCCEEEEEeCCC
Q 042146           96 LIGHTNYVFCINFNPQSNRIVSDTFNETIRIWDIKTGKCLKVLPAHSDPVTAIDFNRDGTMIVTSSYDG  164 (262)
Q Consensus        96 ~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg  164 (262)
                      -.+-...-.-+.|++....++.+-..|.+.+++-.+.+.+-....|...++++++.+.+. .+.++.|.
T Consensus       113 E~gg~~s~sll~wsKg~~el~ig~~~gn~viynhgtsR~iiv~Gkh~RRgtq~av~lEd~-vil~dcd~  180 (615)
T KOG2247|consen  113 ESGGTSSKSLLAWSKGTPELVIGNNAGNIVIYNHGTSRRIIVMGKHQRRGTQIAVTLEDY-VILCDCDN  180 (615)
T ss_pred             hccCcchHHHHhhccCCccccccccccceEEEeccchhhhhhhcccccceeEEEecccce-eeecCcHH
Confidence            111111222277888888899998999999999888777666655888999999998664 44444443

>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain

Probab=91.69  E-value=5.8  Score=32.01  Aligned_cols=60  Identities=8%  Similarity=0.064  Sum_probs=37.3

Q ss_pred             cceEEEEEeCCCCEEEeecC-------------------CCeEEEEECCCCeeeeeeecCCCCeeeEEEccCCCEEEEEe
Q 042146          101 NYVFCINFNPQSNRIVSDTF-------------------NETIRIWDIKTGKCLKVLPAHSDPVTAIDFNRDGTMIVTSS  161 (262)
Q Consensus       101 ~~v~~~~~~~~~~~l~~~~~-------------------dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~  161 (262)
                      .....++|.|+|.+.++-+.                   .|.|.-++...++....-.++ .....++|+|+|+++++-.
T Consensus       124 ~~~~~l~~gpDG~LYv~~G~~~~~~~~~~~~~~~~~~~~~g~i~r~~pdg~~~e~~a~G~-rnp~Gl~~d~~G~l~~tdn  202 (367)
T TIGR02604       124 HSLNSLAWGPDGWLYFNHGNTLASKVTRPGTSDESRQGLGGGLFRYNPDGGKLRVVAHGF-QNPYGHSVDSWGDVFFCDN  202 (367)
T ss_pred             ccccCceECCCCCEEEecccCCCceeccCCCccCcccccCceEEEEecCCCeEEEEecCc-CCCccceECCCCCEEEEcc
Confidence            44678889999887664441                   145666666655432222232 3347899999998876644

All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.

>COG5167 VID27 Protein involved in vacuole import and degradation [Intracellular trafficking and secretion]

Probab=91.66  E-value=5.1  Score=33.43  Aligned_cols=109  Identities=20%  Similarity=0.232  Sum_probs=65.4

Q ss_pred             EEEEecCCCccceecccCCcceEEEEEeCCC-------CEEEeecCCCeEEEEECCCC-eeeeeeecCCCCeeeEEEcc-
Q 042146           82 IRLWDVPTATSLKTLIGHTNYVFCINFNPQS-------NRIVSDTFNETIRIWDIKTG-KCLKVLPAHSDPVTAIDFNR-  152 (262)
Q Consensus        82 i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~-------~~l~~~~~dg~i~vwd~~~~-~~~~~~~~~~~~v~~~~~~~-  152 (262)
                      ++-.|++.|+.+..+.-|...  -+.+.|+.       ..-+.|-++..|.-.|++-. ..+... .....++.-.|+. 
T Consensus       492 LykmDIErGkvveeW~~~ddv--vVqy~p~~kf~qmt~eqtlvGlS~~svFrIDPR~~gNKi~v~-esKdY~tKn~Fss~  568 (776)
T COG5167         492 LYKMDIERGKVVEEWDLKDDV--VVQYNPYFKFQQMTDEQTLVGLSDYSVFRIDPRARGNKIKVV-ESKDYKTKNKFSSG  568 (776)
T ss_pred             ceeeecccceeeeEeecCCcc--eeecCCchhHHhcCccceEEeecccceEEecccccCCceeee-eehhcccccccccc
Confidence            455577777777777665554  45666642       22345556777777787633 222221 1222223333332 


Q ss_pred             ---CCCEEEEEeCCCeEEEEeCCC--------------------CCccEEEEEcCCCeEEEEecC
Q 042146          153 ---DGTMIVTSSYDGLYRILDAST--------------------PNGKFILVGTLDNTLRLWNYS  194 (262)
Q Consensus       153 ---~~~~l~~~~~dg~i~~~d~~~--------------------~~~~~l~~~~~dg~i~i~d~~  194 (262)
                         .+.++++++..|-|++||.-.                    .+|.++++.|. ..+.+-|++
T Consensus       569 ~tTesGyIa~as~kGDirLyDRig~rAKtalP~lG~aIk~idvta~Gk~ilaTCk-~yllL~d~~  632 (776)
T COG5167         569 MTTESGYIAAASRKGDIRLYDRIGKRAKTALPGLGDAIKHIDVTANGKHILATCK-NYLLLTDVP  632 (776)
T ss_pred             ccccCceEEEecCCCceeeehhhcchhhhcCcccccceeeeEeecCCcEEEEeec-ceEEEEecc
Confidence               345899999999999999543                    67777776664 356666654

>PF03088 Str_synth: Strictosidine synthase; InterPro: IPR018119 This entry represents a conserved region found in strictosidine synthase (4

Probab=91.15  E-value=2.4  Score=26.21  Aligned_cols=43  Identities=9%  Similarity=0.105  Sum_probs=28.2

Q ss_pred             ecCCCeEEEEECCCCeeeeeeecCCCCeeeEEEccCCCEEEEEe
Q 042146          118 DTFNETIRIWDIKTGKCLKVLPAHSDPVTAIDFNRDGTMIVTSS  161 (262)
Q Consensus       118 ~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~  161 (262)
                      +..+|.+..||+.+++....+.+ -...+.++++||+..++.+-
T Consensus        33 ~~~~GRll~ydp~t~~~~vl~~~-L~fpNGVals~d~~~vlv~E   75 (89)
T PF03088_consen   33 GRPTGRLLRYDPSTKETTVLLDG-LYFPNGVALSPDESFVLVAE   75 (89)
T ss_dssp             T---EEEEEEETTTTEEEEEEEE-ESSEEEEEE-TTSSEEEEEE
T ss_pred             CCCCcCEEEEECCCCeEEEehhC-CCccCeEEEcCCCCEEEEEe
Confidence            44478899999998875444443 33568899999999766653

3.3.2 from EC), a key enzyme in alkaloid biosynthesis. It catalyses the Pictet-Spengler stereospecific condensation of tryptamine with secologanin to form strictosidine []. The structure of the native enzyme from the Indian medicinal plant Rauvolfia serpentina (Serpentwood) (Devilpepper) represents the first example of a six-bladed four-stranded beta-propeller fold from the plant kingdom [].; GO: 0016844 strictosidine synthase activity, 0009058 biosynthetic process; PDB: 2FPB_A 2V91_B 2FP8_A 3V1S_B 2FPC_A 2VAQ_A 2FP9_B.

>PF11635 Med16: Mediator complex subunit 16; InterPro: IPR021665 Mediator is a large complex of up to 33 proteins that is conserved from plants through fungi to humans - the number and representation of individual subunits varying with species [],[]

Probab=91.04  E-value=8.3  Score=34.52  Aligned_cols=76  Identities=16%  Similarity=0.161  Sum_probs=47.0

Q ss_pred             CccEEEEEcCCCeEEEEecCCCceeeEEeccCCceeEEEEEEecCCCeeEEccccceEEEEEcCCCCeEEEeeecCCCcE
Q 042146          175 NGKFILVGTLDNTLRLWNYSTRKILKTYSGYTNSKYCISSTFSVTNGKYIVSHRDPVISVASHPAKNIIASGALDNDRTM  254 (262)
Q Consensus       175 ~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~d~d~~i  254 (262)
                      -+.+++..-.||+|.++|..+.+.+......+.....+...+...   +-..+..++..++|||.+..++.-.  .+|.+
T Consensus       270 ~~~~v~~~~~DGsI~~~dr~t~~~~~~~~~~~~~~~~v~s~~~~G---f~fp~~~~~~~vafSPt~c~~v~~~--~~~~~  344 (753)
T PF11635_consen  270 LDIVVAFAFSDGSIEFRDRNTMKELNETRTNGEPPNTVTSLFQAG---FHFPCIQPPLHVAFSPTMCSLVQID--EDGKT  344 (753)
T ss_pred             cCcEEEEEEcCCeEEEEecCcchhhcccccccCCccccccccccc---cccccCCCCceEEECcccceEEEEe--cCCCc
Confidence            356788889999999999998877765511111111111110000   0001233677899999999999888  78886


Q ss_pred             E
Q 042146          255 K  255 (262)
Q Consensus       255 ~  255 (262)
                      .
T Consensus       345 ~  345 (753)
T PF11635_consen  345 K  345 (753)
T ss_pred             e
Confidence            5

It is arranged into four different sections, a core, a head, a tail and a kinase-activity part, and the number of subunits within each of these is what varies with species. Overall, Mediator regulates the transcriptional activity of RNA polymerase II but it would appear that each of the four different sections has a slightly different function. Med16 is one of the subunits of the Tail portion of the Mediator complex and is required for lipopolysaccharide gene-expression []. Several members including the human protein, Q9Y2X0 from SWISSPROT, have one or more WD40 domains on them, PF00400 from PFAM.

>TIGR02276 beta_rpt_yvtn 40-residue YVTN family beta-propeller repeat

Probab=90.90  E-value=1.2  Score=22.52  Aligned_cols=31  Identities=26%  Similarity=0.373  Sum_probs=21.9

Q ss_pred             CCccEEEEEc-CCCeEEEEecCCCceeeEEec
Q 042146          174 PNGKFILVGT-LDNTLRLWNYSTRKILKTYSG  204 (262)
Q Consensus       174 ~~~~~l~~~~-~dg~i~i~d~~~~~~~~~~~~  204 (262)
                      |++++|+++. .++.|.++|..+++.+..+..
T Consensus         1 pd~~~lyv~~~~~~~v~~id~~~~~~~~~i~v   32 (42)
T TIGR02276         1 PDGTKLYVTNSGSNTVSVIDTATNKVIATIPV   32 (42)
T ss_pred             CCCCEEEEEeCCCCEEEEEECCCCeEEEEEEC
Confidence            3455555544 567899999988888877764

This repeat of about 40 amino acids is found in up to 14 copies per protein. Archaea Methanosarcina mazei and Methanosarcina acetivorans each have over 10 genes that encode tandem copies of this repeat, which is also found in other species. PSIPRED predicts with high confidence that each 40-residue repeats contains four beta strands. This model overlaps somewhat with the NHL repeat (Pfam pfam01436) and also shows sequence similarity to the WD domain, G-beta repeat (Pfam pfam00400).

>smart00564 PQQ beta-propeller repeat

Probab=90.78  E-value=0.81  Score=21.81  Aligned_cols=27  Identities=22%  Similarity=0.265  Sum_probs=21.8

Q ss_pred             CCEEEeecCCCeEEEEECCCCeeeeee
Q 042146          112 SNRIVSDTFNETIRIWDIKTGKCLKVL  138 (262)
Q Consensus       112 ~~~l~~~~~dg~i~vwd~~~~~~~~~~  138 (262)
                      +..++.++.+|.+..+|.++++.+..+
T Consensus         6 ~~~v~~~~~~g~l~a~d~~~G~~~W~~   32 (33)
T smart00564        6 DGTVYVGSTDGTLYALDAKTGEILWTY   32 (33)
T ss_pred             CCEEEEEcCCCEEEEEEcccCcEEEEc
Confidence            336778888999999999999877654

Beta-propeller repeat occurring in enzymes with pyrrolo-quinoline quinone (PQQ) as cofactor, in Ire1p-like Ser/Thr kinases, and in prokaryotic dehydrogenases.

>PF12657 TFIIIC_delta: Transcription factor IIIC subunit delta N-term; InterPro: IPR024761 This entry represents a domain found towards the N terminus of the 90 kDa subunit of transcription factor IIIC (also known as subunit 9 in yeast [])

Probab=90.59  E-value=3.2  Score=29.36  Aligned_cols=24  Identities=17%  Similarity=0.297  Sum_probs=16.5

Q ss_pred             eEEEEEeCCCCEEEeecCCCeEEEEE
Q 042146          103 VFCINFNPQSNRIVSDTFNETIRIWD  128 (262)
Q Consensus       103 v~~~~~~~~~~~l~~~~~dg~i~vwd  128 (262)
                      ..+++|+.||++.++++  ..|.|.+
T Consensus         7 ~~~l~WS~Dg~laV~t~--~~v~IL~   30 (173)
T PF12657_consen    7 PNALAWSEDGQLAVATG--ESVHILD   30 (173)
T ss_pred             CcCeeECCCCCEEEEcC--CeEEEEe
Confidence            46899999986655543  4677773

The whole subunit is involved in RNA polymerase III-mediated transcription. It is possible that this N-terminal domain interacts with TFIIIC subunit 8 [].

>PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases

Probab=90.34  E-value=7.8  Score=30.77  Aligned_cols=26  Identities=23%  Similarity=0.333  Sum_probs=21.2

Q ss_pred             ceEEEEEccCCCeEEEecCCCeEEEee
Q 042146           25 AVSYVKFSHDGRLLTSSSAEKTLLTYS   51 (262)
Q Consensus        25 ~v~~~~~~~~~~~l~s~~~d~~i~iw~   51 (262)
                      ..+.|+|.|||++|++ ...|.|++++
T Consensus         3 ~P~~~a~~pdG~l~v~-e~~G~i~~~~   28 (331)
T PF07995_consen    3 NPRSMAFLPDGRLLVA-ERSGRIWVVD   28 (331)
T ss_dssp             SEEEEEEETTSCEEEE-ETTTEEEEEE
T ss_pred             CceEEEEeCCCcEEEE-eCCceEEEEe
Confidence            3578999999987665 5599999997

The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B ....

>smart00564 PQQ beta-propeller repeat

Probab=90.18  E-value=0.95  Score=21.58  Aligned_cols=24  Identities=38%  Similarity=0.401  Sum_probs=18.1

Q ss_pred             EEEEEcCCCeEEEEecCCCceeeE
Q 042146          178 FILVGTLDNTLRLWNYSTRKILKT  201 (262)
Q Consensus       178 ~l~~~~~dg~i~i~d~~~~~~~~~  201 (262)
                      .+++++.+|.+..+|.++|+.+..
T Consensus         8 ~v~~~~~~g~l~a~d~~~G~~~W~   31 (33)
T smart00564        8 TVYVGSTDGTLYALDAKTGEILWT   31 (33)
T ss_pred             EEEEEcCCCEEEEEEcccCcEEEE
Confidence            566677788888888888877654

Beta-propeller repeat occurring in enzymes with pyrrolo-quinoline quinone (PQQ) as cofactor, in Ire1p-like Ser/Thr kinases, and in prokaryotic dehydrogenases.

>PF07250 Glyoxal_oxid_N: Glyoxal oxidase N-terminus; InterPro: IPR009880 This entry represents the N terminus (approximately 300 residues) of a number of plant and fungal glyoxal oxidase enzymes

Probab=90.06  E-value=6.6  Score=29.54  Aligned_cols=68  Identities=25%  Similarity=0.411  Sum_probs=39.3

Q ss_pred             EEEECCCCeeeeeeecCCCCeeeEEEccCCCEEEEEeC-C--CeEEEEeCCC--------------------------CC
Q 042146          125 RIWDIKTGKCLKVLPAHSDPVTAIDFNRDGTMIVTSSY-D--GLYRILDAST--------------------------PN  175 (262)
Q Consensus       125 ~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-d--g~i~~~d~~~--------------------------~~  175 (262)
                      .+||+.+++....-.....-..+-.+-+||+++.+|+. +  ..+++++...                          +|
T Consensus        49 ~~yD~~tn~~rpl~v~td~FCSgg~~L~dG~ll~tGG~~~G~~~ir~~~p~~~~~~~~w~e~~~~m~~~RWYpT~~~L~D  128 (243)
T PF07250_consen   49 VEYDPNTNTFRPLTVQTDTFCSGGAFLPDGRLLQTGGDNDGNKAIRIFTPCTSDGTCDWTESPNDMQSGRWYPTATTLPD  128 (243)
T ss_pred             EEEecCCCcEEeccCCCCCcccCcCCCCCCCEEEeCCCCccccceEEEecCCCCCCCCceECcccccCCCccccceECCC
Confidence            56787776542221112223333456678888888764 2  3467776422                          78


Q ss_pred             ccEEEEEcCCC-eEEEEe
Q 042146          176 GKFILVGTLDN-TLRLWN  192 (262)
Q Consensus       176 ~~~l~~~~~dg-~i~i~d  192 (262)
                      |+.|+.|+... ...+|.
T Consensus       129 G~vlIvGG~~~~t~E~~P  146 (243)
T PF07250_consen  129 GRVLIVGGSNNPTYEFWP  146 (243)
T ss_pred             CCEEEEeCcCCCcccccC
Confidence            88888888663 334444

Glyoxal oxidase catalyses the oxidation of aldehydes to carboxylic acids, coupled with reduction of dioxygen to hydrogen peroxide. It is an essential component of the extracellular lignin degradation pathways of the wood-rot fungus Phanerochaete chrysosporium [].

>PF01011 PQQ: PQQ enzyme repeat family

Probab=89.90  E-value=1.4  Score=22.05  Aligned_cols=27  Identities=30%  Similarity=0.299  Sum_probs=23.1

Q ss_pred             EEEeecCCCeEEEEECCCCeeeeeeec
Q 042146          114 RIVSDTFNETIRIWDIKTGKCLKVLPA  140 (262)
Q Consensus       114 ~l~~~~~dg~i~vwd~~~~~~~~~~~~  140 (262)
                      .++.++.+|.|.-.|.++|+.+..++.
T Consensus         2 ~v~~~~~~g~l~AlD~~TG~~~W~~~~   28 (38)
T PF01011_consen    2 RVYVGTPDGYLYALDAKTGKVLWKFQT   28 (38)
T ss_dssp             EEEEETTTSEEEEEETTTTSEEEEEES
T ss_pred             EEEEeCCCCEEEEEECCCCCEEEeeeC
Confidence            456679999999999999999988864

; InterPro: IPR002372 Pyrrolo-quinoline quinone (PQQ) is a redox coenzyme, which serves as a cofactor for a number of enzymes (quinoproteins) and particularly for some bacterial dehydrogenases [, ]. A number of bacterial quinoproteins belong to this family. Enzymes in this group have repeats of a beta propeller.; PDB: 1H4I_C 1H4J_E 1W6S_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A 1G72_A ....

>PF14781 BBS2_N: Ciliary BBSome complex subunit 2, N-terminal

Probab=89.81  E-value=4.4  Score=27.15  Aligned_cols=108  Identities=14%  Similarity=0.101  Sum_probs=59.3

Q ss_pred             EEEEccCCCeEEEecCCCeEEEeecCCCCCCCCCCCCCCccccCCcccc-------------------ccceeEEEEecC
Q 042146           28 YVKFSHDGRLLTSSSAEKTLLTYSLSSISNFDSTPPSPLQKFTGHEQGI-------------------SDLATIRLWDVP   88 (262)
Q Consensus        28 ~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v-------------------~~~~~i~v~d~~   88 (262)
                      .-.|......|+.++.-|+|.|++..............+..+ .-...+                   .....+..||++
T Consensus         3 iGkfDG~~pcL~~aT~~gKV~IH~ph~~~~~~~~~~~~i~~L-Nin~~italaaG~l~~~~~~D~LliGt~t~llaYDV~   81 (136)
T PF14781_consen    3 IGKFDGVHPCLACATTGGKVFIHNPHERGQRTGRQDSDISFL-NINQEITALAAGRLKPDDGRDCLLIGTQTSLLAYDVE   81 (136)
T ss_pred             EEEeCCCceeEEEEecCCEEEEECCCccccccccccCceeEE-ECCCceEEEEEEecCCCCCcCEEEEeccceEEEEEcc
Confidence            445666667888888899999998654322111111111111 111111                   112278888987


Q ss_pred             CCccceecccCCcceEEEEEeC----CCCEEEeecCCCeEEEEECCCCeeeeee
Q 042146           89 TATSLKTLIGHTNYVFCINFNP----QSNRIVSDTFNETIRIWDIKTGKCLKVL  138 (262)
Q Consensus        89 ~~~~~~~~~~~~~~v~~~~~~~----~~~~l~~~~~dg~i~vwd~~~~~~~~~~  138 (262)
                      ....+.. +.-.+.|+++.+-.    ..+++++|+ +..|.-||.+-.+..++.
T Consensus        82 ~N~d~Fy-ke~~DGvn~i~~g~~~~~~~~l~ivGG-ncsi~Gfd~~G~e~fWtV  133 (136)
T PF14781_consen   82 NNSDLFY-KEVPDGVNAIVIGKLGDIPSPLVIVGG-NCSIQGFDYEGNEIFWTV  133 (136)
T ss_pred             cCchhhh-hhCccceeEEEEEecCCCCCcEEEECc-eEEEEEeCCCCcEEEEEe
Confidence            7655432 22346677777633    345555655 677888886655555443

>PRK10115 protease 2; Provisional

Probab=89.39  E-value=15  Score=32.61  Aligned_cols=72  Identities=13%  Similarity=0.083  Sum_probs=46.7

Q ss_pred             cceEEEEEeCCCCEEEeec-----CCCeEEEEECCCCeeeeeeecCCCCeeeEEEccCCCEEEEEeCC------CeEEEE
Q 042146          101 NYVFCINFNPQSNRIVSDT-----FNETIRIWDIKTGKCLKVLPAHSDPVTAIDFNRDGTMIVTSSYD------GLYRIL  169 (262)
Q Consensus       101 ~~v~~~~~~~~~~~l~~~~-----~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d------g~i~~~  169 (262)
                      -.+..+.++|++++|+.+.     ....|++.|+.+++.+...-....  ..++|.+|++.|+....+      ..|..+
T Consensus       127 ~~l~~~~~Spdg~~la~~~d~~G~E~~~l~v~d~~tg~~l~~~i~~~~--~~~~w~~D~~~~~y~~~~~~~~~~~~v~~h  204 (686)
T PRK10115        127 YTLGGMAITPDNTIMALAEDFLSRRQYGIRFRNLETGNWYPELLDNVE--PSFVWANDSWTFYYVRKHPVTLLPYQVWRH  204 (686)
T ss_pred             EEEeEEEECCCCCEEEEEecCCCcEEEEEEEEECCCCCCCCccccCcc--eEEEEeeCCCEEEEEEecCCCCCCCEEEEE
Confidence            3467788999999887532     233699999988864322211111  459999998866655432      357777


Q ss_pred             eCCCC
Q 042146          170 DASTP  174 (262)
Q Consensus       170 d~~~~  174 (262)
                      ++.++
T Consensus       205 ~lgt~  209 (686)
T PRK10115        205 TIGTP  209 (686)
T ss_pred             ECCCC
Confidence            77763

>PF07676 PD40: WD40-like Beta Propeller Repeat; InterPro: IPR011659 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide

Probab=89.37  E-value=1.7  Score=21.73  Aligned_cols=30  Identities=17%  Similarity=0.066  Sum_probs=21.3

Q ss_pred             cccceEEEEEcCCCCeEEEeeecCC--CcEEEE
Q 042146          227 HRDPVISVASHPAKNIIASGALDND--RTMKIW  257 (262)
Q Consensus       227 ~~~~v~~~~~~p~~~~l~~~~~d~d--~~i~iw  257 (262)
                      ....-...+|+|||+.|+-++. .+  |.-.||
T Consensus         7 ~~~~~~~p~~SpDGk~i~f~s~-~~~~g~~diy   38 (39)
T PF07676_consen    7 SPGDDGSPAWSPDGKYIYFTSN-RNDRGSFDIY   38 (39)
T ss_dssp             SSSSEEEEEE-TTSSEEEEEEE-CT--SSEEEE
T ss_pred             CCccccCEEEecCCCEEEEEec-CCCCCCcCEE
Confidence            4456678899999998887763 45  777666

WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events. This region appears to be related to the IPR001680 from INTERPRO repeat. This model is likely to miss copies within a sequence.; PDB: 2HQS_D 1C5K_A 2IVZ_A 2W8B_D 3IAX_A 1CRZ_A 1N6F_D 1N6D_C 1N6E_C 1K32_A ....

>PF01731 Arylesterase: Arylesterase; InterPro: IPR002640 The serum paraoxonases/arylesterases are enzymes that catalyse the hydrolysis of the toxic metabolites of a variety of organophosphorus insecticides

Probab=89.12  E-value=2.7  Score=25.79  Aligned_cols=33  Identities=12%  Similarity=0.250  Sum_probs=26.9

Q ss_pred             cceEEEEEcCCCCeEEEeeecCCCcEEEEeeccC
Q 042146          229 DPVISVASHPAKNIIASGALDNDRTMKIWTQEKE  262 (262)
Q Consensus       229 ~~v~~~~~~p~~~~l~~~~~d~d~~i~iw~~~~~  262 (262)
                      ...+.|.++|++++|..++. ..+.|++++..++
T Consensus        54 ~~aNGI~~s~~~k~lyVa~~-~~~~I~vy~~~~~   86 (86)
T PF01731_consen   54 SFANGIAISPDKKYLYVASS-LAHSIHVYKRHKD   86 (86)
T ss_pred             CCCceEEEcCCCCEEEEEec-cCCeEEEEEecCC
Confidence            34578999999999888875 5789999998763

The enzymes hydrolyse a broad spectrum of organophosphate substrates, including paraoxon and a number of aromatic carboxylic acid esters (e.g., phenyl acetate), and hence confer resistance to organophosphate toxicity []. Mammals have 3 distinct paraoxonase types, termed PON1-3 [, ]. In mice and humans, the PON genes are found on the same chromosome in close proximity. PON activity has been found in variety of tissues, with highest levels in liver and serum - the source of serum PON is thought to be the liver. Unlike mammals, fish and avian species lack paraoxonase activity. Human and rabbit PONs appear to have two distinct Ca2+ binding sites, one required for stability and one required for catalytic activity. The Ca2+ dependency of PONs suggests a mechanism of hydrolysis where Ca2+ acts as the electrophillic catalyst, like that proposed for phospholipase A2. The paraoxonase enzymes, PON1 and PON3, are high density lipoprotein (HDL)- associated proteins capable of preventing oxidative modification of low density lipoproteins (LPL) []. Although PON2 has oxidative properties, the enzyme does not associate with HDL. Within a given species, PON1, PON2 and PON3 share ~60% amino acid sequence identity, whereas between mammalian species particular PONs (1,2 or 3) share 79-90% identity at the amino acid level. Human PON1 and PON3 share numerous conserved phosphorylation and N-glycosylation sites; however, it is not known whether the PON proteins are modified at these sites, or whether modification at these sites is required for activity in vivo []. This family consists of arylesterases (Also known as serum paraoxonase) 3.1.1.2 from EC. These enzymes hydrolyse organophosphorus esters such as paraoxon and are found in the liver and blood. They confer resistance to organophosphate toxicity []. Human arylesterase (PON1) P27169 from SWISSPROT is associated with HDL and may protect against LDL oxidation [].; GO: 0004064 arylesterase activity

>PF01011 PQQ: PQQ enzyme repeat family

Probab=89.03  E-value=1.8  Score=21.63  Aligned_cols=27  Identities=30%  Similarity=0.326  Sum_probs=23.0

Q ss_pred             EEEEEcCCCeEEEEecCCCceeeEEec
Q 042146          178 FILVGTLDNTLRLWNYSTRKILKTYSG  204 (262)
Q Consensus       178 ~l~~~~~dg~i~i~d~~~~~~~~~~~~  204 (262)
                      .++.++.+|.|+-.|.++|+.+..++.
T Consensus         2 ~v~~~~~~g~l~AlD~~TG~~~W~~~~   28 (38)
T PF01011_consen    2 RVYVGTPDGYLYALDAKTGKVLWKFQT   28 (38)
T ss_dssp             EEEEETTTSEEEEEETTTTSEEEEEES
T ss_pred             EEEEeCCCCEEEEEECCCCCEEEeeeC
Confidence            356669999999999999999988875

; InterPro: IPR002372 Pyrrolo-quinoline quinone (PQQ) is a redox coenzyme, which serves as a cofactor for a number of enzymes (quinoproteins) and particularly for some bacterial dehydrogenases [, ]. A number of bacterial quinoproteins belong to this family. Enzymes in this group have repeats of a beta propeller.; PDB: 1H4I_C 1H4J_E 1W6S_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A 1G72_A ....

>TIGR03118 PEPCTERM_chp_1 conserved hypothetical protein TIGR03118

Probab=88.88  E-value=9.5  Score=29.68  Aligned_cols=83  Identities=22%  Similarity=0.229  Sum_probs=55.1

Q ss_pred             ceEEEEEeCCCCEEEeecCCCeEEEEECC------CC-eeeeeeec-----CCCCeeeEEEccCCCEEEEEeCCCeEEEE
Q 042146          102 YVFCINFNPQSNRIVSDTFNETIRIWDIK------TG-KCLKVLPA-----HSDPVTAIDFNRDGTMIVTSSYDGLYRIL  169 (262)
Q Consensus       102 ~v~~~~~~~~~~~l~~~~~dg~i~vwd~~------~~-~~~~~~~~-----~~~~v~~~~~~~~~~~l~~~~~dg~i~~~  169 (262)
                      .-+.|+++|.+.+-++....+...+||..      .. ..+-.+..     .....+.+.|+......++....      
T Consensus        24 N~WGia~~p~~~~WVadngT~~~TlYdg~~~~~~g~~~~L~vtiP~~~~~~~~~~PTGiVfN~~~~F~vt~~g~------   97 (336)
T TIGR03118        24 NAWGLSYRPGGPFWVANTGTGTATLYVGNPDTQPLVQDPLVVVIPAPPPLAAEGTPTGQVFNGSDTFVVSGEGI------   97 (336)
T ss_pred             ccceeEecCCCCEEEecCCcceEEeecCCcccccCCccceEEEecCCCCCCCCCCccEEEEeCCCceEEcCCCc------
Confidence            45789999999888888888999999986      12 22333331     12457888888765554544221      


Q ss_pred             eCCCCCccEEEEEcCCCeEEEEecC
Q 042146          170 DASTPNGKFILVGTLDNTLRLWNYS  194 (262)
Q Consensus       170 d~~~~~~~~l~~~~~dg~i~i~d~~  194 (262)
                          .....++.+++||+|.-|...
T Consensus        98 ----~~~a~Fif~tEdGTisaW~p~  118 (336)
T TIGR03118        98 ----TGPSRFLFVTEDGTLSGWAPA  118 (336)
T ss_pred             ----ccceeEEEEeCCceEEeecCc
Confidence                112346778899999999854

This model describes and uncharacterized conserved hypothetical protein. Members are found with the C-terminal putative exosortase interaction domain, PEP-CTERM, in Nitrosospira multiformis, Rhodoferax ferrireducens, Solibacter usitatus Ellin6076, and Acidobacteria bacterium Ellin345. It is found without the PEP-CTERM domain in several other species, including Burkholderia ambifaria, Gloeobacter violaceus PCC 7421, and three copies in the Acanthamoeba polyphaga mimivirus.

>PRK13684 Ycf48-like protein; Provisional

Probab=88.10  E-value=12  Score=29.83  Aligned_cols=58  Identities=12%  Similarity=0.138  Sum_probs=33.1

Q ss_pred             CcceEEEEEeCCCCEEEeecCCCeEEEEECCCCeeeeeeec----CCCCeeeEEEccCCCEEE
Q 042146          100 TNYVFCINFNPQSNRIVSDTFNETIRIWDIKTGKCLKVLPA----HSDPVTAIDFNRDGTMIV  158 (262)
Q Consensus       100 ~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~----~~~~v~~~~~~~~~~~l~  158 (262)
                      ...++++.+.|+++.++++. .|.+.+=....+..-.....    -...+.++.+.|++..++
T Consensus       214 ~~~l~~i~~~~~g~~~~vg~-~G~~~~~s~d~G~sW~~~~~~~~~~~~~l~~v~~~~~~~~~~  275 (334)
T PRK13684        214 SRRLQSMGFQPDGNLWMLAR-GGQIRFNDPDDLESWSKPIIPEITNGYGYLDLAYRTPGEIWA  275 (334)
T ss_pred             cccceeeeEcCCCCEEEEec-CCEEEEccCCCCCccccccCCccccccceeeEEEcCCCCEEE
Confidence            45788899999988777764 57665322333332111111    123467788887665443

>KOG1897 consensus Damage-specific DNA binding complex, subunit DDB1 [Replication, recombination and repair]

Probab=87.87  E-value=21  Score=32.50  Aligned_cols=110  Identities=14%  Similarity=0.144  Sum_probs=68.0

Q ss_pred             eEEEEecCCCccceecccCCcceEEEEEeCCCCEEEeecCCCeEEEEECCCCeeeeeee--cCCCCeeeEEEccC--C--
Q 042146           81 TIRLWDVPTATSLKTLIGHTNYVFCINFNPQSNRIVSDTFNETIRIWDIKTGKCLKVLP--AHSDPVTAIDFNRD--G--  154 (262)
Q Consensus        81 ~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~--~~~~~v~~~~~~~~--~--  154 (262)
                      .|++++-.  .....+... ..++..+.+.+...++.++.++.+...++..+. ++...  .....|.|+.++|-  +  
T Consensus       471 ~iRl~ss~--~~~~~W~~p-~~~ti~~~~~n~sqVvvA~~~~~l~y~~i~~~~-l~e~~~~~~e~evaCLDisp~~d~~~  546 (1096)
T KOG1897|consen  471 SIRLVSSA--GLRSEWRPP-GKITIGVVSANASQVVVAGGGLALFYLEIEDGG-LREVSHKEFEYEVACLDISPLGDAPN  546 (1096)
T ss_pred             cEEEEcch--hhhhcccCC-CceEEEEEeecceEEEEecCccEEEEEEeeccc-eeeeeeheecceeEEEecccCCCCCC
Confidence            56777654  233344332 334444455556677777777777777776555 22222  23568999999983  2  


Q ss_pred             --CEEEEEeCCCeEEEEeCCC-------------------------CCccEEEEEcCCCeEEEEecC
Q 042146          155 --TMIVTSSYDGLYRILDAST-------------------------PNGKFILVGTLDNTLRLWNYS  194 (262)
Q Consensus       155 --~~l~~~~~dg~i~~~d~~~-------------------------~~~~~l~~~~~dg~i~i~d~~  194 (262)
                        +.++.|..+..+.+.-...                         .+..+|.++..||.+.-|.+.
T Consensus       547 ~s~~~aVG~Ws~~~~~l~~~pd~~~~~~~~l~~~~iPRSIl~~~~e~d~~yLlvalgdG~l~~fv~d  613 (1096)
T KOG1897|consen  547 KSRLLAVGLWSDISMILTFLPDLILITHEQLSGEIIPRSILLTTFEGDIHYLLVALGDGALLYFVLD  613 (1096)
T ss_pred             cceEEEEEeecceEEEEEECCCcceeeeeccCCCccchheeeEEeeccceEEEEEcCCceEEEEEEE
Confidence              2678887766554432211                         458899999999988766544

>KOG3616 consensus Selective LIM binding factor [Transcription]

Probab=87.76  E-value=12  Score=33.10  Aligned_cols=70  Identities=16%  Similarity=0.267  Sum_probs=46.4

Q ss_pred             CcceEEEEEeCCCCEEEeecCCCeEEEEECCCCeeeeeeecCCCCeeeEEEccCCCEEEEEeCCCeEEEEeCC
Q 042146          100 TNYVFCINFNPQSNRIVSDTFNETIRIWDIKTGKCLKVLPAHSDPVTAIDFNRDGTMIVTSSYDGLYRILDAS  172 (262)
Q Consensus       100 ~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~d~~  172 (262)
                      ...++++.-+|.++-++.++.||+|++|+....+...... ...|-..+.|...|  |+++..|+.+.-|.-.
T Consensus        14 ~e~~~aiqshp~~~s~v~~~~d~si~lfn~~~r~qski~~-~~~p~~nlv~tnhg--l~~~tsdrr~la~~~d   83 (1636)
T KOG3616|consen   14 DEFTTAIQSHPGGQSFVLAHQDGSIILFNFIPRRQSKICE-EAKPKENLVFTNHG--LVTATSDRRALAWKED   83 (1636)
T ss_pred             cceeeeeeecCCCceEEEEecCCcEEEEeecccchhhhhh-hcCCccceeeeccc--eEEEeccchhheeecc
Confidence            4567788889999999999999999999986544322221 12233455665443  5666667776666543

>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]

Probab=87.74  E-value=19  Score=31.75  Aligned_cols=48  Identities=8%  Similarity=0.315  Sum_probs=35.3

Q ss_pred             eEEEEecCCCccceecccCCcceEEEEEeCCCCEEEeecCCCeEEEEECC
Q 042146           81 TIRLWDVPTATSLKTLIGHTNYVFCINFNPQSNRIVSDTFNETIRIWDIK  130 (262)
Q Consensus        81 ~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~  130 (262)
                      .|+|++. +|+.+..+.-....+-.+.|+.+. .|++...+|++++|++-
T Consensus        65 ~I~If~~-sG~lL~~~~w~~~~lI~mgWs~~e-eLI~v~k~g~v~Vy~~~  112 (829)
T KOG2280|consen   65 YIRIFNI-SGQLLGRILWKHGELIGMGWSDDE-ELICVQKDGTVHVYGLL  112 (829)
T ss_pred             eEEEEec-cccchHHHHhcCCCeeeecccCCc-eEEEEeccceEEEeecc
Confidence            5788887 566666554444578899999655 45566789999999985

>PF02333 Phytase: Phytase; InterPro: IPR003431 Phytase (3

Probab=87.53  E-value=14  Score=29.96  Aligned_cols=60  Identities=20%  Similarity=0.400  Sum_probs=31.7

Q ss_pred             CCCCEEEeecCCCeEEEEECCCCeeeeeeecCCCCeeeEEEcc----CCCE--EEEEe-CC---CeEEEEeCC
Q 042146          110 PQSNRIVSDTFNETIRIWDIKTGKCLKVLPAHSDPVTAIDFNR----DGTM--IVTSS-YD---GLYRILDAS  172 (262)
Q Consensus       110 ~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~----~~~~--l~~~~-~d---g~i~~~d~~  172 (262)
                      |...+++....++-+.+||+. |+.+..+.  .+.++.+..-.    .|+.  |+.++ .+   .+|++|.+.
T Consensus        66 p~kSlIigTdK~~GL~VYdL~-Gk~lq~~~--~Gr~NNVDvrygf~l~g~~vDlavas~R~~g~n~l~~f~id  135 (381)
T PF02333_consen   66 PAKSLIIGTDKKGGLYVYDLD-GKELQSLP--VGRPNNVDVRYGFPLNGKTVDLAVASDRSDGRNSLRLFRID  135 (381)
T ss_dssp             GGG-EEEEEETTTEEEEEETT-S-EEEEE---SS-EEEEEEEEEEEETTEEEEEEEEEE-CCCT-EEEEEEEE
T ss_pred             cccceEEEEeCCCCEEEEcCC-CcEEEeec--CCCcceeeeecceecCCceEEEEEEecCcCCCCeEEEEEec
Confidence            355677777888889999986 55555553  23444443321    2332  33333 32   468888654

1.3.8 from EC) (phytate 3-phosphatase) is a secreted enzyme which hydrolyses phytate to release inorganic phosphate. This family appears to represent a novel enzyme that shows phytase activity () and has been shown to consist of a single structural unit with a six-bladed propeller folding architecture ().; GO: 0016158 3-phytase activity; PDB: 3AMS_A 3AMR_A 1QLG_A 2POO_A 1H6L_A 1CVM_A 1POO_A.

>PF14761 HPS3_N: Hermansky-Pudlak syndrome 3

Probab=87.22  E-value=3.5  Score=30.12  Aligned_cols=46  Identities=13%  Similarity=0.236  Sum_probs=32.1

Q ss_pred             EEEEcCCCeEEEEecC--CCceeeEEeccCCceeEEEEEEecCCCeeEEccccceEEEEEcCCCCeEEEee
Q 042146          179 ILVGTLDNTLRLWNYS--TRKILKTYSGYTNSKYCISSTFSVTNGKYIVSHRDPVISVASHPAKNIIASGA  247 (262)
Q Consensus       179 l~~~~~dg~i~i~d~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~  247 (262)
                      |+.+.....|.+|++.  ..++...|.                       --+.|..+.++..|++|+|--
T Consensus        31 Lfva~~g~~Vev~~l~~~~~~~~~~F~-----------------------Tv~~V~~l~y~~~GDYlvTlE   78 (215)
T PF14761_consen   31 LFVAASGCKVEVYDLEQEECPLLCTFS-----------------------TVGRVLQLVYSEAGDYLVTLE   78 (215)
T ss_pred             EEEEcCCCEEEEEEcccCCCceeEEEc-----------------------chhheeEEEeccccceEEEEE
Confidence            3333555678888877  344555555                       446788999999999998875

>PF10214 Rrn6: RNA polymerase I-specific transcription-initiation factor; InterPro: IPR019350 RNA polymerase I-specific transcription-initiation factor Rrn6 and Rrn7 represent components of a multisubunit transcription factor essential for the initiation of rDNA transcription by Pol I []

Probab=87.15  E-value=22  Score=32.01  Aligned_cols=127  Identities=12%  Similarity=0.140  Sum_probs=0.0

Q ss_pred             CcceEEEEEe------CCCCEEEeecCCCeEEEEE------CCCC------------eeeeeeecCCCCeeeEEEcc-CC
Q 042146          100 TNYVFCINFN------PQSNRIVSDTFNETIRIWD------IKTG------------KCLKVLPAHSDPVTAIDFNR-DG  154 (262)
Q Consensus       100 ~~~v~~~~~~------~~~~~l~~~~~dg~i~vwd------~~~~------------~~~~~~~~~~~~v~~~~~~~-~~  154 (262)
                      ..+|..|+|.      ......+..-....+.|+.      +...            ..+..-.....+..+++|+| +.
T Consensus        79 ~~PI~qI~fa~~~~~~~~~~~~l~Vrt~~st~I~~p~~~~~~~~~~~~~s~i~~~~l~~i~~~~tgg~~~aDv~FnP~~~  158 (765)
T PF10214_consen   79 GSPIKQIKFATLSESFDEKSRWLAVRTETSTTILRPEYHRVISSIRSRPSRIDPNPLLTISSSDTGGFPHADVAFNPWDQ  158 (765)
T ss_pred             CCCeeEEEecccccccCCcCcEEEEEcCCEEEEEEcccccccccccCCccccccceeEEechhhcCCCccceEEeccCcc


Q ss_pred             CEEEEEeCCCeEEEEeC----CCCCccEEEEEcCCCeEEEEecCCCceeeEEeccCCceeEEEEEEecCCCeeEEccccc
Q 042146          155 TMIVTSSYDGLYRILDA----STPNGKFILVGTLDNTLRLWNYSTRKILKTYSGYTNSKYCISSTFSVTNGKYIVSHRDP  230 (262)
Q Consensus       155 ~~l~~~~~dg~i~~~d~----~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  230 (262)
                      ..||+....|...+|++    ......+-+.....|.| ++|..                                ....
T Consensus       159 ~q~AiVD~~G~Wsvw~i~~~~~~~~~~~~~~~~~~gsi-~~d~~--------------------------------e~s~  205 (765)
T PF10214_consen  159 RQFAIVDEKGNWSVWDIKGRPKRKSSNLRLSRNISGSI-IFDPE--------------------------------ELSN  205 (765)
T ss_pred             ceEEEEeccCcEEEEEeccccccCCcceeeccCCCccc-cCCCc--------------------------------ccCc


Q ss_pred             eEEEEEcCCCCeEEEeeecCCCcEEEEeeccC
Q 042146          231 VISVASHPAKNIIASGALDNDRTMKIWTQEKE  262 (262)
Q Consensus       231 v~~~~~~p~~~~l~~~~~d~d~~i~iw~~~~~  262 (262)
                      -..+.|.++...|+.+   .-..+.++|++.+
T Consensus       206 w~rI~W~~~~~~lLv~---~r~~l~~~d~~~~  234 (765)
T PF10214_consen  206 WKRILWVSDSNRLLVC---NRSKLMLIDFESN  234 (765)
T ss_pred             ceeeEecCCCCEEEEE---cCCceEEEECCCC

These proteins are found in fungi.

>PF03088 Str_synth: Strictosidine synthase; InterPro: IPR018119 This entry represents a conserved region found in strictosidine synthase (4

Probab=86.72  E-value=4.7  Score=24.95  Aligned_cols=43  Identities=19%  Similarity=0.159  Sum_probs=28.2

Q ss_pred             EcCCCeEEEEecCCCceeeEEeccCCceeEEEEEEecCCCeeEEccccceEEEEEcCCCCeEEEee
Q 042146          182 GTLDNTLRLWNYSTRKILKTYSGYTNSKYCISSTFSVTNGKYIVSHRDPVISVASHPAKNIIASGA  247 (262)
Q Consensus       182 ~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~  247 (262)
                      +..+|.+..||..+++..-.+.+                       -.-.+.++.+|++..|+.+-
T Consensus        33 ~~~~GRll~ydp~t~~~~vl~~~-----------------------L~fpNGVals~d~~~vlv~E   75 (89)
T PF03088_consen   33 GRPTGRLLRYDPSTKETTVLLDG-----------------------LYFPNGVALSPDESFVLVAE   75 (89)
T ss_dssp             T---EEEEEEETTTTEEEEEEEE-----------------------ESSEEEEEE-TTSSEEEEEE
T ss_pred             CCCCcCEEEEECCCCeEEEehhC-----------------------CCccCeEEEcCCCCEEEEEe
Confidence            44567888899988775444442                       22457899999999888874

3.3.2 from EC), a key enzyme in alkaloid biosynthesis. It catalyses the Pictet-Spengler stereospecific condensation of tryptamine with secologanin to form strictosidine []. The structure of the native enzyme from the Indian medicinal plant Rauvolfia serpentina (Serpentwood) (Devilpepper) represents the first example of a six-bladed four-stranded beta-propeller fold from the plant kingdom [].; GO: 0016844 strictosidine synthase activity, 0009058 biosynthetic process; PDB: 2FPB_A 2V91_B 2FP8_A 3V1S_B 2FPC_A 2VAQ_A 2FP9_B.

>PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation

Probab=86.32  E-value=13  Score=28.30  Aligned_cols=28  Identities=11%  Similarity=0.103  Sum_probs=19.7

Q ss_pred             ceEEEEEcCCCCeEEEeeec-CCCcEEEE
Q 042146          230 PVISVASHPAKNIIASGALD-NDRTMKIW  257 (262)
Q Consensus       230 ~v~~~~~~p~~~~l~~~~~d-~d~~i~iw  257 (262)
                      .|..+.+||||..++....+ .++.|.+=
T Consensus       113 ~I~~l~vSpDG~RvA~v~~~~~~~~v~va  141 (253)
T PF10647_consen  113 RITALRVSPDGTRVAVVVEDGGGGRVYVA  141 (253)
T ss_pred             ceEEEEECCCCcEEEEEEecCCCCeEEEE
Confidence            89999999999987765411 24555553

It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues.

>PRK13684 Ycf48-like protein; Provisional

Probab=85.85  E-value=16  Score=29.08  Aligned_cols=58  Identities=12%  Similarity=0.247  Sum_probs=33.7

Q ss_pred             cceEEEEEeCCCCEEEeecCCCeEEE-EECCCCeeeeee-ecCCCCeeeEEEccCCCEEEEE
Q 042146          101 NYVFCINFNPQSNRIVSDTFNETIRI-WDIKTGKCLKVL-PAHSDPVTAIDFNRDGTMIVTS  160 (262)
Q Consensus       101 ~~v~~~~~~~~~~~l~~~~~dg~i~v-wd~~~~~~~~~~-~~~~~~v~~~~~~~~~~~l~~~  160 (262)
                      ..+..+.+.|++.+++++. .|.+.. +|- .++.-... ..-...++++.+.|+++.++++
T Consensus       173 g~~~~i~~~~~g~~v~~g~-~G~i~~s~~~-gg~tW~~~~~~~~~~l~~i~~~~~g~~~~vg  232 (334)
T PRK13684        173 GVVRNLRRSPDGKYVAVSS-RGNFYSTWEP-GQTAWTPHQRNSSRRLQSMGFQPDGNLWMLA  232 (334)
T ss_pred             ceEEEEEECCCCeEEEEeC-CceEEEEcCC-CCCeEEEeeCCCcccceeeeEcCCCCEEEEe
Confidence            4678888888877766655 455442 221 12211111 2234578888888887765554

>KOG4460 consensus Nuclear pore complex, Nup88/rNup84 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=84.27  E-value=24  Score=29.80  Aligned_cols=73  Identities=14%  Similarity=0.122  Sum_probs=49.9

Q ss_pred             cceEEEEEeCCCCEEEeecCCCeEEEEEC---------CCCeeeeeee-----------cCCCCeeeEEEccCC---CEE
Q 042146          101 NYVFCINFNPQSNRIVSDTFNETIRIWDI---------KTGKCLKVLP-----------AHSDPVTAIDFNRDG---TMI  157 (262)
Q Consensus       101 ~~v~~~~~~~~~~~l~~~~~dg~i~vwd~---------~~~~~~~~~~-----------~~~~~v~~~~~~~~~---~~l  157 (262)
                      -.|..+..++.|..++-.+.+|.+.++=.         +.++..-..+           ...-.+..++|+|++   .+|
T Consensus       104 feV~~vl~s~~GS~VaL~G~~Gi~vMeLp~rwG~~s~~eDgk~~v~CRt~~i~~~~ftss~~ltl~Qa~WHP~S~~D~hL  183 (741)
T KOG4460|consen  104 FEVYQVLLSPTGSHVALIGIKGLMVMELPKRWGKNSEFEDGKSTVNCRTTPVAERFFTSSTSLTLKQAAWHPSSILDPHL  183 (741)
T ss_pred             EEEEEEEecCCCceEEEecCCeeEEEEchhhcCccceecCCCceEEEEeecccceeeccCCceeeeeccccCCccCCceE
Confidence            45778888999999988888987766532         2333221111           112246778899965   578


Q ss_pred             EEEeCCCeEEEEeCCC
Q 042146          158 VTSSYDGLYRILDAST  173 (262)
Q Consensus       158 ~~~~~dg~i~~~d~~~  173 (262)
                      ..-+.|..+++||+..
T Consensus       184 ~iL~sdnviRiy~lS~  199 (741)
T KOG4460|consen  184 VLLTSDNVIRIYSLSE  199 (741)
T ss_pred             EEEecCcEEEEEecCC
Confidence            8888899999999877

>COG3823 Glutamine cyclotransferase [Posttranslational modification, protein turnover, chaperones]

Probab=83.76  E-value=15  Score=26.96  Aligned_cols=92  Identities=21%  Similarity=0.206  Sum_probs=52.6

Q ss_pred             CCCEEEeecCC--CeEEEEECCCCeeeeeeecCCCCeeeEEEccCCCEEEE-EeCCCeEEEEeCCC--------------
Q 042146          111 QSNRIVSDTFN--ETIRIWDIKTGKCLKVLPAHSDPVTAIDFNRDGTMIVT-SSYDGLYRILDAST--------------  173 (262)
Q Consensus       111 ~~~~l~~~~~d--g~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~-~~~dg~i~~~d~~~--------------  173 (262)
                      ++.++.+.+.-  ..|++||+++++.+...+-....+..=-...-++.+.. .=.+|....+|.++              
T Consensus        55 ~g~i~esTG~yg~S~ir~~~L~~gq~~~s~~l~~~~~FgEGit~~gd~~y~LTw~egvaf~~d~~t~~~lg~~~y~GeGW  134 (262)
T COG3823          55 DGHILESTGLYGFSKIRVSDLTTGQEIFSEKLAPDTVFGEGITKLGDYFYQLTWKEGVAFKYDADTLEELGRFSYEGEGW  134 (262)
T ss_pred             CCEEEEeccccccceeEEEeccCceEEEEeecCCccccccceeeccceEEEEEeccceeEEEChHHhhhhcccccCCcce
Confidence            45566665543  37999999999876654322111111111111333322 23567777788765              


Q ss_pred             ---CCccEEEEEcCCCeEEEEecCCCceeeEE
Q 042146          174 ---PNGKFILVGTLDNTLRLWNYSTRKILKTY  202 (262)
Q Consensus       174 ---~~~~~l~~~~~dg~i~i~d~~~~~~~~~~  202 (262)
                         .++..|+.++....++.-|.++.....++
T Consensus       135 gLt~d~~~LimsdGsatL~frdP~tfa~~~~v  166 (262)
T COG3823         135 GLTSDDKNLIMSDGSATLQFRDPKTFAELDTV  166 (262)
T ss_pred             eeecCCcceEeeCCceEEEecCHHHhhhcceE
Confidence               45666777777778888787765444443

>KOG2109 consensus WD40 repeat protein [General function prediction only]

Probab=83.76  E-value=7.5  Score=33.46  Aligned_cols=84  Identities=14%  Similarity=0.279  Sum_probs=56.9

Q ss_pred             EEEEecCCCccceecccCCcceEEEEEeCCCCEEEeecCCC-eEEEEECCCCee-----eeeeecC-----CCCeeeEEE
Q 042146           82 IRLWDVPTATSLKTLIGHTNYVFCINFNPQSNRIVSDTFNE-TIRIWDIKTGKC-----LKVLPAH-----SDPVTAIDF  150 (262)
Q Consensus        82 i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg-~i~vwd~~~~~~-----~~~~~~~-----~~~v~~~~~  150 (262)
                      +.+-|+.+...+..++.|+.++..++|.+.+.++++++-.| .|.++.+....+     -..+..+     ...+..++|
T Consensus       297 vivkdf~S~a~i~QfkAhkspiSaLcfdqsgsllViasi~g~nVnvfRimet~~t~~~~~qs~~~s~ra~t~aviqdicf  376 (788)
T KOG2109|consen  297 VIVKDFDSFADIRQFKAHKSPISALCFDQSGSLLVIASITGRNVNVFRIMETVCTVNVSDQSLVVSPRANTAAVIQDICF  376 (788)
T ss_pred             EEeecccchhhhhheeeecCcccccccccCceEEEEEeeccceeeeEEeccccccccccccccccchhcchHHHHHHHhh
Confidence            66667777778888999999999999999999999888665 355554321111     1111111     123556778


Q ss_pred             ccCCCEEEEEeCCCe
Q 042146          151 NRDGTMIVTSSYDGL  165 (262)
Q Consensus       151 ~~~~~~l~~~~~dg~  165 (262)
                      +....+...++.+|.
T Consensus       377 s~~s~~r~~gsc~Ge  391 (788)
T KOG2109|consen  377 SEVSTIRTAGSCEGE  391 (788)
T ss_pred             hhhcceEeecccCCC
Confidence            888888888777664

>KOG1983 consensus Tomosyn and related SNARE-interacting proteins [Intracellular trafficking, secretion, and vesicular transport]

Probab=82.30  E-value=43  Score=31.26  Aligned_cols=33  Identities=15%  Similarity=0.206  Sum_probs=27.6

Q ss_pred             cCceEEEEEccCCCeEEEecCCCeEEEeecCCC
Q 042146           23 LRAVSYVKFSHDGRLLTSSSAEKTLLTYSLSSI   55 (262)
Q Consensus        23 ~~~v~~~~~~~~~~~l~s~~~d~~i~iw~~~~~   55 (262)
                      ......++|+|.-..+|.+...|.|+++-....
T Consensus        35 ~~~~~~~afD~~q~llai~t~tg~i~~yg~~~v   67 (993)
T KOG1983|consen   35 PSTPSALAFDPTQGLLAIGTRTGAIKIYGQPGV   67 (993)
T ss_pred             CCCCcceeeccccceEEEEEecccEEEecccce
Confidence            345677899999999999999999999976543

>PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases

Probab=81.96  E-value=24  Score=28.06  Aligned_cols=50  Identities=22%  Similarity=0.306  Sum_probs=33.4

Q ss_pred             ceEEEEEeCCCCEEEeecCCCeEEEEECCCCee---eeee----ecCCCCeeeEEEccC
Q 042146          102 YVFCINFNPQSNRIVSDTFNETIRIWDIKTGKC---LKVL----PAHSDPVTAIDFNRD  153 (262)
Q Consensus       102 ~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~---~~~~----~~~~~~v~~~~~~~~  153 (262)
                      ..+.|+|.|+++++++- ..|.|.+++ ..+..   +..+    .........++++|+
T Consensus         3 ~P~~~a~~pdG~l~v~e-~~G~i~~~~-~~g~~~~~v~~~~~v~~~~~~gllgia~~p~   59 (331)
T PF07995_consen    3 NPRSMAFLPDGRLLVAE-RSGRIWVVD-KDGSLKTPVADLPEVFADGERGLLGIAFHPD   59 (331)
T ss_dssp             SEEEEEEETTSCEEEEE-TTTEEEEEE-TTTEECEEEEE-TTTBTSTTBSEEEEEE-TT
T ss_pred             CceEEEEeCCCcEEEEe-CCceEEEEe-CCCcCcceecccccccccccCCcccceeccc
Confidence            35789999998877764 499999999 44432   2222    123457889999994

The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B ....

>PF02333 Phytase: Phytase; InterPro: IPR003431 Phytase (3

Probab=81.94  E-value=26  Score=28.45  Aligned_cols=140  Identities=10%  Similarity=0.170  Sum_probs=78.1

Q ss_pred             cCCCeEEEecCCCeEEEeecCCCCCCCCCCCCC--Ccc-----ccCCccc--ccc-----ceeEEEEecCCC-ccceecc
Q 042146           33 HDGRLLTSSSAEKTLLTYSLSSISNFDSTPPSP--LQK-----FTGHEQG--ISD-----LATIRLWDVPTA-TSLKTLI   97 (262)
Q Consensus        33 ~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~--~~~-----~~~~~~~--v~~-----~~~i~v~d~~~~-~~~~~~~   97 (262)
                      |...+++...+.+-+.+||++............  +..     +.+....  +..     ...|++|.+... ..+..+.
T Consensus        66 p~kSlIigTdK~~GL~VYdL~Gk~lq~~~~Gr~NNVDvrygf~l~g~~vDlavas~R~~g~n~l~~f~id~~~g~L~~v~  145 (381)
T PF02333_consen   66 PAKSLIIGTDKKGGLYVYDLDGKELQSLPVGRPNNVDVRYGFPLNGKTVDLAVASDRSDGRNSLRLFRIDPDTGELTDVT  145 (381)
T ss_dssp             GGG-EEEEEETTTEEEEEETTS-EEEEE-SS-EEEEEEEEEEEETTEEEEEEEEEE-CCCT-EEEEEEEETTTTEEEE-C
T ss_pred             cccceEEEEeCCCCEEEEcCCCcEEEeecCCCcceeeeecceecCCceEEEEEEecCcCCCCeEEEEEecCCCCcceEcC
Confidence            345688888889999999998743322211111  100     1111100  110     125778866531 1222221


Q ss_pred             c-------CCcceEEEEEe--C-CCC-EEEeecCCCeEEEEECC---CC----eeeeeeecCCCCeeeEEEccCCCEEEE
Q 042146           98 G-------HTNYVFCINFN--P-QSN-RIVSDTFNETIRIWDIK---TG----KCLKVLPAHSDPVTAIDFNRDGTMIVT  159 (262)
Q Consensus        98 ~-------~~~~v~~~~~~--~-~~~-~l~~~~~dg~i~vwd~~---~~----~~~~~~~~~~~~v~~~~~~~~~~~l~~  159 (262)
                      .       ....+..+++.  | ++. +++....+|.+..|.+.   .+    ++++.+.. .+.+..++.......|+.
T Consensus       146 ~~~~p~~~~~~e~yGlcly~~~~~g~~ya~v~~k~G~~~Qy~L~~~~~g~v~~~lVR~f~~-~sQ~EGCVVDDe~g~LYv  224 (381)
T PF02333_consen  146 DPAAPIATDLSEPYGLCLYRSPSTGALYAFVNGKDGRVEQYELTDDGDGKVSATLVREFKV-GSQPEGCVVDDETGRLYV  224 (381)
T ss_dssp             BTTC-EE-SSSSEEEEEEEE-TTT--EEEEEEETTSEEEEEEEEE-TTSSEEEEEEEEEE--SS-EEEEEEETTTTEEEE
T ss_pred             CCCcccccccccceeeEEeecCCCCcEEEEEecCCceEEEEEEEeCCCCcEeeEEEEEecC-CCcceEEEEecccCCEEE
Confidence            1       11335666663  4 444 56677788988888774   22    45777764 457888988888888999


Q ss_pred             EeCCCeEEEEeCCC
Q 042146          160 SSYDGLYRILDAST  173 (262)
Q Consensus       160 ~~~dg~i~~~d~~~  173 (262)
                      +-.+.-|.-|+...
T Consensus       225 gEE~~GIW~y~Aep  238 (381)
T PF02333_consen  225 GEEDVGIWRYDAEP  238 (381)
T ss_dssp             EETTTEEEEEESSC
T ss_pred             ecCccEEEEEecCC
Confidence            99888887777663

1.3.8 from EC) (phytate 3-phosphatase) is a secreted enzyme which hydrolyses phytate to release inorganic phosphate. This family appears to represent a novel enzyme that shows phytase activity () and has been shown to consist of a single structural unit with a six-bladed propeller folding architecture ().; GO: 0016158 3-phytase activity; PDB: 3AMS_A 3AMR_A 1QLG_A 2POO_A 1H6L_A 1CVM_A 1POO_A.

>smart00036 CNH Domain found in NIK1-like kinases, mouse citron and yeast ROM1, ROM2

Probab=81.90  E-value=12  Score=29.39  Aligned_cols=58  Identities=19%  Similarity=0.173  Sum_probs=37.5

Q ss_pred             cEEEEEcCCCeEEEEecCC--CceeeEEeccCCceeEEEEEEecCCCeeEEccccceEEEEEcCCCCeEEEeeecCCCcE
Q 042146          177 KFILVGTLDNTLRLWNYST--RKILKTYSGYTNSKYCISSTFSVTNGKYIVSHRDPVISVASHPAKNIIASGALDNDRTM  254 (262)
Q Consensus       177 ~~l~~~~~dg~i~i~d~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~d~d~~i  254 (262)
                      ++|+.|+++|. ++.++..  ++..+.+                        +..+|+++...+..+.|++-+. ....+
T Consensus        14 ~~lL~GTe~Gl-y~~~~~~~~~~~~kl~------------------------~~~~v~q~~v~~~~~lLi~Lsg-k~~~L   67 (302)
T smart00036       14 KWLLVGTEEGL-YVLNISDQPGTLEKLI------------------------GRRSVTQIWVLEENNVLLMISG-KKPQL   67 (302)
T ss_pred             cEEEEEeCCce-EEEEcccCCCCeEEec------------------------CcCceEEEEEEhhhCEEEEEeC-CcceE
Confidence            47888888874 4445543  2233322                        5668999999998887777751 23348


Q ss_pred             EEEeec
Q 042146          255 KIWTQE  260 (262)
Q Consensus       255 ~iw~~~  260 (262)
                      +.+++.
T Consensus        68 ~~~~L~   73 (302)
T smart00036       68 YSHPLS   73 (302)
T ss_pred             EEEEHH
Confidence            888863

Unpublished observations.

>PF05935 Arylsulfotrans: Arylsulfotransferase (ASST); InterPro: IPR010262 This family consists of several bacterial arylsulphotransferase proteins

Probab=81.08  E-value=32  Score=29.00  Aligned_cols=81  Identities=15%  Similarity=0.228  Sum_probs=41.1

Q ss_pred             CCCeEEEEECCCCeeeeeeecCCCCeeeEEEccCCCEEEEEeCCCeEEEEeCCC----------------------CCcc
Q 042146          120 FNETIRIWDIKTGKCLKVLPAHSDPVTAIDFNRDGTMIVTSSYDGLYRILDAST----------------------PNGK  177 (262)
Q Consensus       120 ~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~d~~~----------------------~~~~  177 (262)
                      ......++|. .|...+.+.........+...++|.+++...  ..+..+|+..                      ++|+
T Consensus       126 ~~~~~~~iD~-~G~Vrw~~~~~~~~~~~~~~l~nG~ll~~~~--~~~~e~D~~G~v~~~~~l~~~~~~~HHD~~~l~nGn  202 (477)
T PF05935_consen  126 SSSYTYLIDN-NGDVRWYLPLDSGSDNSFKQLPNGNLLIGSG--NRLYEIDLLGKVIWEYDLPGGYYDFHHDIDELPNGN  202 (477)
T ss_dssp             BEEEEEEEET-TS-EEEEE-GGGT--SSEEE-TTS-EEEEEB--TEEEEE-TT--EEEEEE--TTEE-B-S-EEE-TTS-
T ss_pred             CCceEEEECC-CccEEEEEccCccccceeeEcCCCCEEEecC--CceEEEcCCCCEEEeeecCCcccccccccEECCCCC
Confidence            3456667774 3555555543322222256667887776554  5555555433                      7888


Q ss_pred             EEEEEcC-------------CCeEEEEecCCCceeeEEec
Q 042146          178 FILVGTL-------------DNTLRLWNYSTRKILKTYSG  204 (262)
Q Consensus       178 ~l~~~~~-------------dg~i~i~d~~~~~~~~~~~~  204 (262)
                      +|+.+..             ...|...| .+|+.+..+..
T Consensus       203 ~L~l~~~~~~~~~~~~~~~~~D~Ivevd-~tG~vv~~wd~  241 (477)
T PF05935_consen  203 LLILASETKYVDEDKDVDTVEDVIVEVD-PTGEVVWEWDF  241 (477)
T ss_dssp             EEEEEEETTEE-TS-EE---S-EEEEE--TTS-EEEEEEG
T ss_pred             EEEEEeecccccCCCCccEecCEEEEEC-CCCCEEEEEeh
Confidence            8887772             12356667 77888777654

Arylsulphotransferase (ASST) transfers a sulphate group from phenolic sulphate esters to a phenolic acceptor substrate [].; PDB: 3ETT_B 3ELQ_A 3ETS_A.

>COG4880 Secreted protein containing C-terminal beta-propeller domain distantly related to WD-40 repeats [General function prediction only]

Probab=80.44  E-value=31  Score=28.36  Aligned_cols=75  Identities=16%  Similarity=0.214  Sum_probs=46.5

Q ss_pred             CCcceEEEEEeCCCCEEEeecCCCeEEEEECCCCeeeeeeecCCCCeeeEEEcc--CCCEEEEEeCCCe--EEEEeCCC
Q 042146           99 HTNYVFCINFNPQSNRIVSDTFNETIRIWDIKTGKCLKVLPAHSDPVTAIDFNR--DGTMIVTSSYDGL--YRILDAST  173 (262)
Q Consensus        99 ~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~--~~~~l~~~~~dg~--i~~~d~~~  173 (262)
                      ....|.++.|..|--++++=-.-.-+.+.|+.+.+..+.+..-+-+-.+--.+|  .+..|-.|..+|.  |.+||+..
T Consensus       426 ~gERIYAvRf~gdv~yiVTfrqtDPlfviDlsNPenPkvlGeLKIPGfS~YLHpigen~~lGvG~~~g~vKiSLFdiSd  504 (603)
T COG4880         426 PGERIYAVRFVGDVLYIVTFRQTDPLFVIDLSNPENPKVLGELKIPGFSEYLHPIGENRLLGVGAYQGGVKISLFDISD  504 (603)
T ss_pred             CCceEEEEEEeCceEEEEEEeccCceEEEEcCCCCCCceeEEEecCCchhhccccCCCcEEEeecccCCceEEEEeccC
Confidence            446788899987766777765556678888876543333221122223334566  4567777777775  56788776

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	262
3mxx_A	315	Crystal Structure Of Wdr5 Mutant (S62a) Length = 31		1e-74
2gnq_A	336	Structure Of Wdr5 Length = 336		1e-74
2xl2_A	334	Wdr5 In Complex With An Rbbp5 Peptide Recruited To		1e-74
3psl_A	318	Fine-Tuning The Stimulation Of Mll1 Methyltransfera		2e-74
2h13_A	317	Crystal Structure Of Wdr5HISTONE H3 COMPLEX Length		2e-74
2h9l_A	329	Wdr5delta23 Length = 329		2e-74
2h68_A	312	Histone H3 Recognition And Presentation By The Wdr5		2e-74
2g99_A	308	Structural Basis For The Specific Recognition Of Me		3e-74
3smr_A	312	Crystal Structure Of Human Wd Repeat Domain 5 With		3e-74
4a7j_A	318	Symmetric Dimethylation Of H3 Arginine 2 Is A Novel		3e-74
2h9m_A	313	Wdr5 In Complex With Unmodified H3k4 Peptide Length		3e-74
2g9a_A	311	Structural Basis For The Specific Recognition Of Me		3e-74
3emh_A	318	Structural Basis Of Wdr5-Mll Interaction Length = 3		3e-74
3n0e_A	315	Crystal Structure Of Wdr5 Mutant (W330y) Length = 3		1e-73
3n0d_A	315	Crystal Structure Of Wdr5 Mutant (W330f) Length = 3		1e-73
2cnx_A	315	Wdr5 And Histone H3 Lysine 4 Dimethyl Complex At 2.		1e-73
2co0_A	315	Wdr5 And Unmodified Histone H3 Complex At 2.25 Angs		5e-73
2ymu_A	577	Structure Of A Highly Repetitive Propeller Structur		5e-21
1vyh_C	410	Paf-Ah Holoenzyme: Lis1ALFA2 Length = 410		1e-18
1vyh_C	410	Paf-Ah Holoenzyme: Lis1ALFA2 Length = 410		2e-11
2ovp_B	445	Structure Of The Skp1-Fbw7 Complex Length = 445		8e-18
1erj_A	393	Crystal Structure Of The C-Terminal Wd40 Domain Of		1e-16
1trj_A	314	Homology Model Of Yeast Rack1 Protein Fitted Into 1		5e-15
3izb_a	319	Localization Of The Small Subunit Ribosomal Protein		6e-15
3rfg_A	319	Crystal Structure Of The Yeast Rack1 Dimer In Space		6e-15
3rfh_A	319	Crystal Structure Of The Yeast Rack1 Dimer In Space		6e-15
3jyv_R	313	Structure Of The 40s Rrna And Proteins And PE TRNA		6e-15
1p22_A	435	Structure Of A Beta-Trcp1-Skp1-Beta-Catenin Complex		4e-14
1p22_A	435	Structure Of A Beta-Trcp1-Skp1-Beta-Catenin Complex		1e-13
1p22_A	435	Structure Of A Beta-Trcp1-Skp1-Beta-Catenin Complex		1e-08
3frx_A	319	Crystal Structure Of The Yeast Orthologue Of Rack1,		7e-14
3zey_7	318	High-resolution Cryo-electron Microscopy Structure		5e-12
3zey_7	318	High-resolution Cryo-electron Microscopy Structure		2e-07
2zkq_a	317	Structure Of A Mammalian Ribosomal 40s Subunit With		3e-11
2zkq_a	317	Structure Of A Mammalian Ribosomal 40s Subunit With		1e-04
4aow_A	340	Crystal Structure Of The Human Rack1 Protein At A R		3e-11
4aow_A	340	Crystal Structure Of The Human Rack1 Protein At A R		1e-04
2xzm_R	343	Crystal Structure Of The Eukaryotic 40s Ribosomal S		3e-11
3ow8_A	321	Crystal Structure Of The Wd Repeat-Containing Prote		2e-10
3shf_A	1256	Crystal Structure Of The R265s Mutant Of Full-Lengt		5e-10
3shf_A	1256	Crystal Structure Of The R265s Mutant Of Full-Lengt		5e-07
3sfz_A	1249	Crystal Structure Of Full-Length Murine Apaf-1 Leng		5e-10
3sfz_A	1249	Crystal Structure Of Full-Length Murine Apaf-1 Leng		5e-07
3dm0_A	694	Maltose Binding Protein Fusion With Rack1 From A. T		6e-10
2pbi_B	354	The Multifunctional Nature Of Gbeta5RGS9 REVEALED F		3e-09
3odt_A	313	Crystal Structure Of Wd40 Beta Propeller Domain Of		1e-08
3odt_A	313	Crystal Structure Of Wd40 Beta Propeller Domain Of		4e-05
3iza_B	1263	Structure Of An Apoptosome-Procaspase-9 Card Comple		2e-08
3iza_B	1263	Structure Of An Apoptosome-Procaspase-9 Card Comple		3e-05
2yno_A	310	Yeast Betaprime Cop 1-304h6 Length = 310		4e-08
2ynn_A	304	Yeast Betaprime Cop 1-304 With Ktktn Motif Length =		4e-08
2bcj_B	340	Crystal Structure Of G Protein-coupled Receptor Kin		4e-08
2bcj_B	340	Crystal Structure Of G Protein-coupled Receptor Kin		7e-08
2ynp_A	604	Yeast Betaprime Cop 1-604 With Ktktn Motif Length =		4e-08
3sn6_B	351	Crystal Structure Of The Beta2 Adrenergic Receptor-		4e-08
3sn6_B	351	Crystal Structure Of The Beta2 Adrenergic Receptor-		6e-08
1gg2_B	340	G Protein Heterotrimer Mutant Gi_alpha_1(G203a) Bet		4e-08
1gg2_B	340	G Protein Heterotrimer Mutant Gi_alpha_1(G203a) Bet		7e-08
3mkq_A	814	Crystal Structure Of Yeast AlphaBETAPRIME-Cop Subco		4e-08
3mks_B	464	Crystal Structure Of Yeast Cdc4SKP1 IN COMPLEX WITH		4e-08
1a0r_B	340	Heterotrimeric Complex Of PhosducinTRANSDUCIN BETA-		6e-08
1a0r_B	340	Heterotrimeric Complex Of PhosducinTRANSDUCIN BETA-		7e-08
1got_B	340	Heterotrimeric Complex Of A Gt-AlphaGI-Alpha Chimer		6e-08
1got_B	340	Heterotrimeric Complex Of A Gt-AlphaGI-Alpha Chimer		7e-08
2aq5_A	402	Crystal Structure Of Murine Coronin-1 Length = 402		1e-07
2b4e_A	402	Crystal Structure Of Murine Coronin-1: Monoclinic F		2e-07
1nex_B	464	Crystal Structure Of Scskp1-Sccdc4-Cpd Peptide Comp		2e-07
1nex_B	464	Crystal Structure Of Scskp1-Sccdc4-Cpd Peptide Comp		2e-07
1r5m_A	425	Crystal Structure Of The C-Terminal Wd40 Domain Of		1e-06
3iz6_a	380	Localization Of The Small Subunit Ribosomal Protein		1e-05
4gga_A	420	Structural Analysis Of Human Cdc20 Supports Multi-S		3e-05
4ggc_A	318	Structural Analysis Of Human Cdc20 Supports Multi-S		4e-05
4ggd_A	431	Structural Analysis Of Human Cdc20 Supports Multisi		4e-05
1nr0_A	611	Two Seven-Bladed Beta-Propeller Domains Revealed By		6e-05
4a11_B	408	Structure Of The Hsddb1-Hscsa Complex Length = 408		1e-04
3jzn_A	366	Structure Of Eed In Apo Form Length = 366		2e-04
3jpx_A	402	Eed: A Novel Histone Trimethyllysine Binder Within		2e-04
2qxv_A	361	Structural Basis Of Ezh2 Recognition By Eed Length		2e-04
3iiy_A	365	Crystal Structure Of Eed In Complex With A Trimethy		2e-04
3iiw_A	365	Crystal Structure Of Eed In Complex With A Trimethy		2e-04
2hes_X	330	Cytosolic Iron-sulphur Assembly Protein- 1 Length =		2e-04
3mmy_A	368	Structural And Functional Analysis Of The Interacti		3e-04
3vl1_A	420	Crystal Structure Of Yeast Rpn14 Length = 420		4e-04
3acp_A	417	Crystal Structure Of Yeast Rpn14, A Chaperone Of Th		4e-04
3fm0_A	345	Crystal Structure Of Wd40 Protein Ciao1 Length = 34		4e-04
1gxr_A	337	Wd40 Region Of Human Groucho/tle1 Length = 337		4e-04
4aez_A	401	Crystal Structure Of Mitotic Checkpoint Complex Len		5e-04

>pdb|3MXX|A Chain A, Crystal Structure Of Wdr5 Mutant (S62a) Length = 315

Iteration: 1
 Score =  276 bits (705), Expect = 1e-74,   Method: Compositional matrix adjust.
 Identities = 150/316 (47%), Positives = 191/316 (60%), Gaps = 68/316 (21%)
Query: 5   RSLESFRP-YTLTQTLNGHLRAVSYVKFSHDGRLLTSSSAEKTLLTYSLSSISNFDSTPP 63
           R  E  +P Y L  TL GH +AVS VKFS +G  L +SSA+K +  +       F+ T  
Sbjct: 7   RGSEFVKPNYALKFTLAGHTKAVSSVKFSPNGEWLAASSADKLIKIWGAYD-GKFEKT-- 63
Query: 64  SPLQKFTGHEQGISDLA---------------TIRLWDVPTATSLKTLIGHTNYVFCINF 108
                 +GH+ GISD+A               T+++WDV +   LKTL GH+NYVFC NF
Sbjct: 64  -----ISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNF 118
Query: 109 NPQSNRIVSDTFNETIRIWDIKTGKCLKVLPAHSDPVTAIDFNRDGTMIVTSSYDGLYRI 168
           NPQSN IVS +F+E++RIWD+KTGKCLK LPAHSDPV+A+ FNRDG++IV+SSYDGL RI
Sbjct: 119 NPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRI 178
Query: 169 LDAS---------------------TPNGKFILVGTLDNTLRLWNYSTRKILKTYSGYTN 207
            D +                     +PNGK+IL  TLDNTL+LW+YS  K LKTY+G+ N
Sbjct: 179 WDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKN 238
Query: 208 SKYCISSTFSVTNGKYIVS-----------------------HRDPVISVASHPAKNIIA 244
            KYCI + FSVT GK+IVS                       H D VIS A HP +NIIA
Sbjct: 239 EKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIA 298
Query: 245 SGALDNDRTMKIWTQE 260
           S AL+ND+T+K+W  +
Sbjct: 299 SAALENDKTIKLWKSD 314

>pdb|2GNQ|A Chain A, Structure Of Wdr5 Length = 336

Iteration: 1
 Score =  275 bits (704), Expect = 1e-74,   Method: Compositional matrix adjust.
 Identities = 148/307 (48%), Positives = 187/307 (60%), Gaps = 67/307 (21%)
Query: 13  YTLTQTLNGHLRAVSYVKFSHDGRLLTSSSAEKTLLTYSLSSISNFDSTPPSPLQKFTGH 72
           Y L  TL GH +AVS VKFS +G  L SSSA+K +  +       F+ T        +GH
Sbjct: 37  YALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYD-GKFEKT-------ISGH 88
Query: 73  EQGISDLA---------------TIRLWDVPTATSLKTLIGHTNYVFCINFNPQSNRIVS 117
           + GISD+A               T+++WDV +   LKTL GH+NYVFC NFNPQSN IVS
Sbjct: 89  KLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVS 148
Query: 118 DTFNETIRIWDIKTGKCLKVLPAHSDPVTAIDFNRDGTMIVTSSYDGLYRILDAS----- 172
            +F+E++RIWD+KTGKCLK LPAHSDPV+A+ FNRDG++IV+SSYDGL RI D +     
Sbjct: 149 GSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCL 208
Query: 173 ----------------TPNGKFILVGTLDNTLRLWNYSTRKILKTYSGYTNSKYCISSTF 216
                           +PNGK+IL  TLDNTL+LW+YS  K LKTY+G+ N KYCI + F
Sbjct: 209 KTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANF 268
Query: 217 SVTNGKYIVS-----------------------HRDPVISVASHPAKNIIASGALDNDRT 253
           SVT GK+IVS                       H D VIS A HP +NIIAS AL+ND+T
Sbjct: 269 SVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKT 328
Query: 254 MKIWTQE 260
           +K+W  +
Sbjct: 329 IKLWKSD 335

>pdb|2XL2|A Chain A, Wdr5 In Complex With An Rbbp5 Peptide Recruited To Novel Site Length = 334

Iteration: 1
 Score =  275 bits (704), Expect = 1e-74,   Method: Compositional matrix adjust.
 Identities = 148/307 (48%), Positives = 187/307 (60%), Gaps = 67/307 (21%)
Query: 13  YTLTQTLNGHLRAVSYVKFSHDGRLLTSSSAEKTLLTYSLSSISNFDSTPPSPLQKFTGH 72
           Y L  TL GH +AVS VKFS +G  L SSSA+K +  +       F+ T        +GH
Sbjct: 35  YALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYD-GKFEKT-------ISGH 86
Query: 73  EQGISDLA---------------TIRLWDVPTATSLKTLIGHTNYVFCINFNPQSNRIVS 117
           + GISD+A               T+++WDV +   LKTL GH+NYVFC NFNPQSN IVS
Sbjct: 87  KLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVS 146
Query: 118 DTFNETIRIWDIKTGKCLKVLPAHSDPVTAIDFNRDGTMIVTSSYDGLYRILDAS----- 172
            +F+E++RIWD+KTGKCLK LPAHSDPV+A+ FNRDG++IV+SSYDGL RI D +     
Sbjct: 147 GSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCL 206
Query: 173 ----------------TPNGKFILVGTLDNTLRLWNYSTRKILKTYSGYTNSKYCISSTF 216
                           +PNGK+IL  TLDNTL+LW+YS  K LKTY+G+ N KYCI + F
Sbjct: 207 KTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANF 266
Query: 217 SVTNGKYIVS-----------------------HRDPVISVASHPAKNIIASGALDNDRT 253
           SVT GK+IVS                       H D VIS A HP +NIIAS AL+ND+T
Sbjct: 267 SVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKT 326
Query: 254 MKIWTQE 260
           +K+W  +
Sbjct: 327 IKLWKSD 333

>pdb|3PSL|A Chain A, Fine-Tuning The Stimulation Of Mll1 Methyltransferase Activity By A Histone H3 Based Peptide Mimetic Length = 318

Iteration: 1
 Score =  275 bits (703), Expect = 2e-74,   Method: Compositional matrix adjust.
 Identities = 148/307 (48%), Positives = 187/307 (60%), Gaps = 67/307 (21%)
Query: 13  YTLTQTLNGHLRAVSYVKFSHDGRLLTSSSAEKTLLTYSLSSISNFDSTPPSPLQKFTGH 72
           Y L  TL GH +AVS VKFS +G  L SSSA+K +  +       F+ T        +GH
Sbjct: 19  YALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYD-GKFEKT-------ISGH 70
Query: 73  EQGISDLA---------------TIRLWDVPTATSLKTLIGHTNYVFCINFNPQSNRIVS 117
           + GISD+A               T+++WDV +   LKTL GH+NYVFC NFNPQSN IVS
Sbjct: 71  KLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVS 130
Query: 118 DTFNETIRIWDIKTGKCLKVLPAHSDPVTAIDFNRDGTMIVTSSYDGLYRILDAS----- 172
            +F+E++RIWD+KTGKCLK LPAHSDPV+A+ FNRDG++IV+SSYDGL RI D +     
Sbjct: 131 GSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCL 190
Query: 173 ----------------TPNGKFILVGTLDNTLRLWNYSTRKILKTYSGYTNSKYCISSTF 216
                           +PNGK+IL  TLDNTL+LW+YS  K LKTY+G+ N KYCI + F
Sbjct: 191 KTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANF 250
Query: 217 SVTNGKYIVS-----------------------HRDPVISVASHPAKNIIASGALDNDRT 253
           SVT GK+IVS                       H D VIS A HP +NIIAS AL+ND+T
Sbjct: 251 SVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKT 310
Query: 254 MKIWTQE 260
           +K+W  +
Sbjct: 311 IKLWKSD 317

>pdb|2H13|A Chain A, Crystal Structure Of Wdr5HISTONE H3 COMPLEX Length = 317

Iteration: 1
 Score =  275 bits (703), Expect = 2e-74,   Method: Compositional matrix adjust.
 Identities = 148/307 (48%), Positives = 187/307 (60%), Gaps = 67/307 (21%)
Query: 13  YTLTQTLNGHLRAVSYVKFSHDGRLLTSSSAEKTLLTYSLSSISNFDSTPPSPLQKFTGH 72
           Y L  TL GH +AVS VKFS +G  L SSSA+K +  +       F+ T        +GH
Sbjct: 18  YALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYD-GKFEKT-------ISGH 69
Query: 73  EQGISDLA---------------TIRLWDVPTATSLKTLIGHTNYVFCINFNPQSNRIVS 117
           + GISD+A               T+++WDV +   LKTL GH+NYVFC NFNPQSN IVS
Sbjct: 70  KLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVS 129
Query: 118 DTFNETIRIWDIKTGKCLKVLPAHSDPVTAIDFNRDGTMIVTSSYDGLYRILDAS----- 172
            +F+E++RIWD+KTGKCLK LPAHSDPV+A+ FNRDG++IV+SSYDGL RI D +     
Sbjct: 130 GSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCL 189
Query: 173 ----------------TPNGKFILVGTLDNTLRLWNYSTRKILKTYSGYTNSKYCISSTF 216
                           +PNGK+IL  TLDNTL+LW+YS  K LKTY+G+ N KYCI + F
Sbjct: 190 KTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANF 249
Query: 217 SVTNGKYIVS-----------------------HRDPVISVASHPAKNIIASGALDNDRT 253
           SVT GK+IVS                       H D VIS A HP +NIIAS AL+ND+T
Sbjct: 250 SVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKT 309
Query: 254 MKIWTQE 260
           +K+W  +
Sbjct: 310 IKLWKSD 316

>pdb|2H9L|A Chain A, Wdr5delta23 Length = 329

Iteration: 1
 Score =  275 bits (702), Expect = 2e-74,   Method: Compositional matrix adjust.
 Identities = 148/307 (48%), Positives = 187/307 (60%), Gaps = 67/307 (21%)
Query: 13  YTLTQTLNGHLRAVSYVKFSHDGRLLTSSSAEKTLLTYSLSSISNFDSTPPSPLQKFTGH 72
           Y L  TL GH +AVS VKFS +G  L SSSA+K +  +       F+ T        +GH
Sbjct: 30  YALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYD-GKFEKT-------ISGH 81
Query: 73  EQGISDLA---------------TIRLWDVPTATSLKTLIGHTNYVFCINFNPQSNRIVS 117
           + GISD+A               T+++WDV +   LKTL GH+NYVFC NFNPQSN IVS
Sbjct: 82  KLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVS 141
Query: 118 DTFNETIRIWDIKTGKCLKVLPAHSDPVTAIDFNRDGTMIVTSSYDGLYRILDAS----- 172
            +F+E++RIWD+KTGKCLK LPAHSDPV+A+ FNRDG++IV+SSYDGL RI D +     
Sbjct: 142 GSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCL 201
Query: 173 ----------------TPNGKFILVGTLDNTLRLWNYSTRKILKTYSGYTNSKYCISSTF 216
                           +PNGK+IL  TLDNTL+LW+YS  K LKTY+G+ N KYCI + F
Sbjct: 202 KTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANF 261
Query: 217 SVTNGKYIVS-----------------------HRDPVISVASHPAKNIIASGALDNDRT 253
           SVT GK+IVS                       H D VIS A HP +NIIAS AL+ND+T
Sbjct: 262 SVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKT 321
Query: 254 MKIWTQE 260
           +K+W  +
Sbjct: 322 IKLWKSD 328

>pdb|2H68|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module Of The Mll1 Complex Length = 312

Iteration: 1
 Score =  275 bits (702), Expect = 2e-74,   Method: Compositional matrix adjust.
 Identities = 148/307 (48%), Positives = 187/307 (60%), Gaps = 67/307 (21%)
Query: 13  YTLTQTLNGHLRAVSYVKFSHDGRLLTSSSAEKTLLTYSLSSISNFDSTPPSPLQKFTGH 72
           Y L  TL GH +AVS VKFS +G  L SSSA+K +  +       F+ T        +GH
Sbjct: 13  YALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYD-GKFEKT-------ISGH 64
Query: 73  EQGISDLA---------------TIRLWDVPTATSLKTLIGHTNYVFCINFNPQSNRIVS 117
           + GISD+A               T+++WDV +   LKTL GH+NYVFC NFNPQSN IVS
Sbjct: 65  KLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVS 124
Query: 118 DTFNETIRIWDIKTGKCLKVLPAHSDPVTAIDFNRDGTMIVTSSYDGLYRILDAS----- 172
            +F+E++RIWD+KTGKCLK LPAHSDPV+A+ FNRDG++IV+SSYDGL RI D +     
Sbjct: 125 GSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCL 184
Query: 173 ----------------TPNGKFILVGTLDNTLRLWNYSTRKILKTYSGYTNSKYCISSTF 216
                           +PNGK+IL  TLDNTL+LW+YS  K LKTY+G+ N KYCI + F
Sbjct: 185 KTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANF 244
Query: 217 SVTNGKYIVS-----------------------HRDPVISVASHPAKNIIASGALDNDRT 253
           SVT GK+IVS                       H D VIS A HP +NIIAS AL+ND+T
Sbjct: 245 SVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKT 304
Query: 254 MKIWTQE 260
           +K+W  +
Sbjct: 305 IKLWKSD 311

>pdb|2G99|A Chain A, Structural Basis For The Specific Recognition Of Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5 Length = 308

Iteration: 1
 Score =  275 bits (702), Expect = 3e-74,   Method: Compositional matrix adjust.
 Identities = 148/307 (48%), Positives = 187/307 (60%), Gaps = 67/307 (21%)
Query: 13  YTLTQTLNGHLRAVSYVKFSHDGRLLTSSSAEKTLLTYSLSSISNFDSTPPSPLQKFTGH 72
           Y L  TL GH +AVS VKFS +G  L SSSA+K +  +       F+ T        +GH
Sbjct: 9   YALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYD-GKFEKT-------ISGH 60
Query: 73  EQGISDLA---------------TIRLWDVPTATSLKTLIGHTNYVFCINFNPQSNRIVS 117
           + GISD+A               T+++WDV +   LKTL GH+NYVFC NFNPQSN IVS
Sbjct: 61  KLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVS 120
Query: 118 DTFNETIRIWDIKTGKCLKVLPAHSDPVTAIDFNRDGTMIVTSSYDGLYRILDAS----- 172
            +F+E++RIWD+KTGKCLK LPAHSDPV+A+ FNRDG++IV+SSYDGL RI D +     
Sbjct: 121 GSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCL 180
Query: 173 ----------------TPNGKFILVGTLDNTLRLWNYSTRKILKTYSGYTNSKYCISSTF 216
                           +PNGK+IL  TLDNTL+LW+YS  K LKTY+G+ N KYCI + F
Sbjct: 181 KTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANF 240
Query: 217 SVTNGKYIVS-----------------------HRDPVISVASHPAKNIIASGALDNDRT 253
           SVT GK+IVS                       H D VIS A HP +NIIAS AL+ND+T
Sbjct: 241 SVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKT 300
Query: 254 MKIWTQE 260
           +K+W  +
Sbjct: 301 IKLWKSD 307

>pdb|3SMR|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 With Compound Length = 312

Iteration: 1
 Score =  275 bits (702), Expect = 3e-74,   Method: Compositional matrix adjust.
 Identities = 148/307 (48%), Positives = 187/307 (60%), Gaps = 67/307 (21%)
Query: 13  YTLTQTLNGHLRAVSYVKFSHDGRLLTSSSAEKTLLTYSLSSISNFDSTPPSPLQKFTGH 72
           Y L  TL GH +AVS VKFS +G  L SSSA+K +  +       F+ T        +GH
Sbjct: 13  YALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYD-GKFEKT-------ISGH 64
Query: 73  EQGISDLA---------------TIRLWDVPTATSLKTLIGHTNYVFCINFNPQSNRIVS 117
           + GISD+A               T+++WDV +   LKTL GH+NYVFC NFNPQSN IVS
Sbjct: 65  KLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVS 124
Query: 118 DTFNETIRIWDIKTGKCLKVLPAHSDPVTAIDFNRDGTMIVTSSYDGLYRILDAS----- 172
            +F+E++RIWD+KTGKCLK LPAHSDPV+A+ FNRDG++IV+SSYDGL RI D +     
Sbjct: 125 GSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCL 184
Query: 173 ----------------TPNGKFILVGTLDNTLRLWNYSTRKILKTYSGYTNSKYCISSTF 216
                           +PNGK+IL  TLDNTL+LW+YS  K LKTY+G+ N KYCI + F
Sbjct: 185 KTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANF 244
Query: 217 SVTNGKYIVS-----------------------HRDPVISVASHPAKNIIASGALDNDRT 253
           SVT GK+IVS                       H D VIS A HP +NIIAS AL+ND+T
Sbjct: 245 SVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKT 304
Query: 254 MKIWTQE 260
           +K+W  +
Sbjct: 305 IKLWKSD 311

>pdb|4A7J|A Chain A, Symmetric Dimethylation Of H3 Arginine 2 Is A Novel Histone Mark That Supports Euchromatin Maintenance Length = 318

Iteration: 1
 Score =  275 bits (702), Expect = 3e-74,   Method: Compositional matrix adjust.
 Identities = 148/307 (48%), Positives = 187/307 (60%), Gaps = 67/307 (21%)
Query: 13  YTLTQTLNGHLRAVSYVKFSHDGRLLTSSSAEKTLLTYSLSSISNFDSTPPSPLQKFTGH 72
           Y L  TL GH +AVS VKFS +G  L SSSA+K +  +       F+ T        +GH
Sbjct: 19  YALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYD-GKFEKT-------ISGH 70
Query: 73  EQGISDLA---------------TIRLWDVPTATSLKTLIGHTNYVFCINFNPQSNRIVS 117
           + GISD+A               T+++WDV +   LKTL GH+NYVFC NFNPQSN IVS
Sbjct: 71  KLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVS 130
Query: 118 DTFNETIRIWDIKTGKCLKVLPAHSDPVTAIDFNRDGTMIVTSSYDGLYRILDAS----- 172
            +F+E++RIWD+KTGKCLK LPAHSDPV+A+ FNRDG++IV+SSYDGL RI D +     
Sbjct: 131 GSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCL 190
Query: 173 ----------------TPNGKFILVGTLDNTLRLWNYSTRKILKTYSGYTNSKYCISSTF 216
                           +PNGK+IL  TLDNTL+LW+YS  K LKTY+G+ N KYCI + F
Sbjct: 191 KTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANF 250
Query: 217 SVTNGKYIVS-----------------------HRDPVISVASHPAKNIIASGALDNDRT 253
           SVT GK+IVS                       H D VIS A HP +NIIAS AL+ND+T
Sbjct: 251 SVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKT 310
Query: 254 MKIWTQE 260
           +K+W  +
Sbjct: 311 IKLWKSD 317

>pdb|2H9M|A Chain A, Wdr5 In Complex With Unmodified H3k4 Peptide Length = 313

Iteration: 1
 Score =  274 bits (701), Expect = 3e-74,   Method: Compositional matrix adjust.
 Identities = 148/307 (48%), Positives = 187/307 (60%), Gaps = 67/307 (21%)
Query: 13  YTLTQTLNGHLRAVSYVKFSHDGRLLTSSSAEKTLLTYSLSSISNFDSTPPSPLQKFTGH 72
           Y L  TL GH +AVS VKFS +G  L SSSA+K +  +       F+ T        +GH
Sbjct: 14  YALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYD-GKFEKT-------ISGH 65
Query: 73  EQGISDLA---------------TIRLWDVPTATSLKTLIGHTNYVFCINFNPQSNRIVS 117
           + GISD+A               T+++WDV +   LKTL GH+NYVFC NFNPQSN IVS
Sbjct: 66  KLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVS 125
Query: 118 DTFNETIRIWDIKTGKCLKVLPAHSDPVTAIDFNRDGTMIVTSSYDGLYRILDAS----- 172
            +F+E++RIWD+KTGKCLK LPAHSDPV+A+ FNRDG++IV+SSYDGL RI D +     
Sbjct: 126 GSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCL 185
Query: 173 ----------------TPNGKFILVGTLDNTLRLWNYSTRKILKTYSGYTNSKYCISSTF 216
                           +PNGK+IL  TLDNTL+LW+YS  K LKTY+G+ N KYCI + F
Sbjct: 186 KTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANF 245
Query: 217 SVTNGKYIVS-----------------------HRDPVISVASHPAKNIIASGALDNDRT 253
           SVT GK+IVS                       H D VIS A HP +NIIAS AL+ND+T
Sbjct: 246 SVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKT 305
Query: 254 MKIWTQE 260
           +K+W  +
Sbjct: 306 IKLWKSD 312

>pdb|2G9A|A Chain A, Structural Basis For The Specific Recognition Of Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5 Length = 311

Iteration: 1
 Score =  274 bits (701), Expect = 3e-74,   Method: Compositional matrix adjust.
 Identities = 148/307 (48%), Positives = 187/307 (60%), Gaps = 67/307 (21%)
Query: 13  YTLTQTLNGHLRAVSYVKFSHDGRLLTSSSAEKTLLTYSLSSISNFDSTPPSPLQKFTGH 72
           Y L  TL GH +AVS VKFS +G  L SSSA+K +  +       F+ T        +GH
Sbjct: 12  YALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYD-GKFEKT-------ISGH 63
Query: 73  EQGISDLA---------------TIRLWDVPTATSLKTLIGHTNYVFCINFNPQSNRIVS 117
           + GISD+A               T+++WDV +   LKTL GH+NYVFC NFNPQSN IVS
Sbjct: 64  KLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVS 123
Query: 118 DTFNETIRIWDIKTGKCLKVLPAHSDPVTAIDFNRDGTMIVTSSYDGLYRILDAS----- 172
            +F+E++RIWD+KTGKCLK LPAHSDPV+A+ FNRDG++IV+SSYDGL RI D +     
Sbjct: 124 GSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCL 183
Query: 173 ----------------TPNGKFILVGTLDNTLRLWNYSTRKILKTYSGYTNSKYCISSTF 216
                           +PNGK+IL  TLDNTL+LW+YS  K LKTY+G+ N KYCI + F
Sbjct: 184 KTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANF 243
Query: 217 SVTNGKYIVS-----------------------HRDPVISVASHPAKNIIASGALDNDRT 253
           SVT GK+IVS                       H D VIS A HP +NIIAS AL+ND+T
Sbjct: 244 SVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKT 303
Query: 254 MKIWTQE 260
           +K+W  +
Sbjct: 304 IKLWKSD 310

>pdb|3EMH|A Chain A, Structural Basis Of Wdr5-Mll Interaction Length = 318

Iteration: 1
 Score =  274 bits (701), Expect = 3e-74,   Method: Compositional matrix adjust.
 Identities = 148/307 (48%), Positives = 187/307 (60%), Gaps = 67/307 (21%)
Query: 13  YTLTQTLNGHLRAVSYVKFSHDGRLLTSSSAEKTLLTYSLSSISNFDSTPPSPLQKFTGH 72
           Y L  TL GH +AVS VKFS +G  L SSSA+K +  +       F+ T        +GH
Sbjct: 19  YALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYD-GKFEKT-------ISGH 70
Query: 73  EQGISDLA---------------TIRLWDVPTATSLKTLIGHTNYVFCINFNPQSNRIVS 117
           + GISD+A               T+++WDV +   LKTL GH+NYVFC NFNPQSN IVS
Sbjct: 71  KLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVS 130
Query: 118 DTFNETIRIWDIKTGKCLKVLPAHSDPVTAIDFNRDGTMIVTSSYDGLYRILDAS----- 172
            +F+E++RIWD+KTGKCLK LPAHSDPV+A+ FNRDG++IV+SSYDGL RI D +     
Sbjct: 131 GSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCL 190
Query: 173 ----------------TPNGKFILVGTLDNTLRLWNYSTRKILKTYSGYTNSKYCISSTF 216
                           +PNGK+IL  TLDNTL+LW+YS  K LKTY+G+ N KYCI + F
Sbjct: 191 KTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANF 250
Query: 217 SVTNGKYIVS-----------------------HRDPVISVASHPAKNIIASGALDNDRT 253
           SVT GK+IVS                       H D VIS A HP +NIIAS AL+ND+T
Sbjct: 251 SVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKT 310
Query: 254 MKIWTQE 260
           +K+W  +
Sbjct: 311 IKLWKSD 317

>pdb|3N0E|A Chain A, Crystal Structure Of Wdr5 Mutant (W330y) Length = 315

Iteration: 1
 Score =  273 bits (697), Expect = 1e-73,   Method: Compositional matrix adjust.
 Identities = 150/316 (47%), Positives = 191/316 (60%), Gaps = 68/316 (21%)
Query: 5   RSLESFRP-YTLTQTLNGHLRAVSYVKFSHDGRLLTSSSAEKTLLTYSLSSISNFDSTPP 63
           R  E  +P Y L  TL GH +AVS VKFS +G  L SSSA+K +  +       F+ T  
Sbjct: 7   RGSEFVKPNYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYD-GKFEKT-- 63
Query: 64  SPLQKFTGHEQGISDLA---------------TIRLWDVPTATSLKTLIGHTNYVFCINF 108
                 +GH+ GISD+A               T+++WDV +   LKTL GH+NYVFC NF
Sbjct: 64  -----ISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNF 118
Query: 109 NPQSNRIVSDTFNETIRIWDIKTGKCLKVLPAHSDPVTAIDFNRDGTMIVTSSYDGLYRI 168
           NPQSN IVS +F+E++RIWD+KTGKCLK LPAHSDPV+A+ FNRDG++IV+SSYDGL RI
Sbjct: 119 NPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRI 178
Query: 169 LDAS---------------------TPNGKFILVGTLDNTLRLWNYSTRKILKTYSGYTN 207
            D +                     +PNGK+IL  TLDNTL+LW+YS  K LKTY+G+ N
Sbjct: 179 WDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKN 238
Query: 208 SKYCISSTFSVTNGKYIVS-----------------------HRDPVISVASHPAKNIIA 244
            KYCI + FSVT GK+IVS                       H D VIS A HP +NIIA
Sbjct: 239 EKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIA 298
Query: 245 SGALDNDRTMKIWTQE 260
           S AL+ND+T+K++  +
Sbjct: 299 SAALENDKTIKLYKSD 314

>pdb|3N0D|A Chain A, Crystal Structure Of Wdr5 Mutant (W330f) Length = 315

Iteration: 1
 Score =  272 bits (696), Expect = 1e-73,   Method: Compositional matrix adjust.
 Identities = 150/316 (47%), Positives = 191/316 (60%), Gaps = 68/316 (21%)
Query: 5   RSLESFRP-YTLTQTLNGHLRAVSYVKFSHDGRLLTSSSAEKTLLTYSLSSISNFDSTPP 63
           R  E  +P Y L  TL GH +AVS VKFS +G  L SSSA+K +  +       F+ T  
Sbjct: 7   RGSEFVKPNYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYD-GKFEKT-- 63
Query: 64  SPLQKFTGHEQGISDLA---------------TIRLWDVPTATSLKTLIGHTNYVFCINF 108
                 +GH+ GISD+A               T+++WDV +   LKTL GH+NYVFC NF
Sbjct: 64  -----ISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNF 118
Query: 109 NPQSNRIVSDTFNETIRIWDIKTGKCLKVLPAHSDPVTAIDFNRDGTMIVTSSYDGLYRI 168
           NPQSN IVS +F+E++RIWD+KTGKCLK LPAHSDPV+A+ FNRDG++IV+SSYDGL RI
Sbjct: 119 NPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRI 178
Query: 169 LDAS---------------------TPNGKFILVGTLDNTLRLWNYSTRKILKTYSGYTN 207
            D +                     +PNGK+IL  TLDNTL+LW+YS  K LKTY+G+ N
Sbjct: 179 WDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKN 238
Query: 208 SKYCISSTFSVTNGKYIVS-----------------------HRDPVISVASHPAKNIIA 244
            KYCI + FSVT GK+IVS                       H D VIS A HP +NIIA
Sbjct: 239 EKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIA 298
Query: 245 SGALDNDRTMKIWTQE 260
           S AL+ND+T+K++  +
Sbjct: 299 SAALENDKTIKLFKSD 314

>pdb|2CNX|A Chain A, Wdr5 And Histone H3 Lysine 4 Dimethyl Complex At 2.1 Angstrom Length = 315

Iteration: 1
 Score =  272 bits (696), Expect = 1e-73,   Method: Compositional matrix adjust.
 Identities = 147/307 (47%), Positives = 186/307 (60%), Gaps = 67/307 (21%)
Query: 13  YTLTQTLNGHLRAVSYVKFSHDGRLLTSSSAEKTLLTYSLSSISNFDSTPPSPLQKFTGH 72
           Y L  TL GH +AVS VKFS +G  L SSSA+K +  +       F+ T        +GH
Sbjct: 16  YALMFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYD-GKFEKT-------ISGH 67
Query: 73  EQGISDLA---------------TIRLWDVPTATSLKTLIGHTNYVFCINFNPQSNRIVS 117
           + GISD+A               T+++WDV +   LKTL GH+NYVFC NFNPQSN IVS
Sbjct: 68  KLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVS 127
Query: 118 DTFNETIRIWDIKTGKCLKVLPAHSDPVTAIDFNRDGTMIVTSSYDGLYRILDAS----- 172
            +F+E++RIWD+KTG CLK LPAHSDPV+A+ FNRDG++IV+SSYDGL RI D +     
Sbjct: 128 GSFDESVRIWDVKTGMCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCL 187
Query: 173 ----------------TPNGKFILVGTLDNTLRLWNYSTRKILKTYSGYTNSKYCISSTF 216
                           +PNGK+IL  TLDNTL+LW+YS  K LKTY+G+ N KYCI + F
Sbjct: 188 KTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANF 247
Query: 217 SVTNGKYIVS-----------------------HRDPVISVASHPAKNIIASGALDNDRT 253
           SVT GK+IVS                       H D VIS A HP +NIIAS AL+ND+T
Sbjct: 248 SVTGGKWIVSGSEDNMVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKT 307
Query: 254 MKIWTQE 260
           +K+W  +
Sbjct: 308 IKLWKSD 314

>pdb|2CO0|A Chain A, Wdr5 And Unmodified Histone H3 Complex At 2.25 Angstrom Length = 315

Iteration: 1
 Score =  270 bits (691), Expect = 5e-73,   Method: Compositional matrix adjust.
 Identities = 146/307 (47%), Positives = 185/307 (60%), Gaps = 67/307 (21%)
Query: 13  YTLTQTLNGHLRAVSYVKFSHDGRLLTSSSAEKTLLTYSLSSISNFDSTPPSPLQKFTGH 72
           Y L  TL GH +AVS VKFS +G  L SSSA+K +  +       F+ T        +GH
Sbjct: 16  YALMFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYD-GKFEKT-------ISGH 67
Query: 73  EQGISDLA---------------TIRLWDVPTATSLKTLIGHTNYVFCINFNPQSNRIVS 117
           + GISD+A               T+++WDV +   LKTL GH+NYVFC NFNPQSN IVS
Sbjct: 68  KLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVS 127
Query: 118 DTFNETIRIWDIKTGKCLKVLPAHSDPVTAIDFNRDGTMIVTSSYDGLYRILDAS----- 172
            +F+E++RIWD+KTG CLK LPAHSDPV+A+ FNRDG++IV+SSYDGL RI D +     
Sbjct: 128 GSFDESVRIWDVKTGMCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCL 187
Query: 173 ----------------TPNGKFILVGTLDNTLRLWNYSTRKILKTYSGYTNSKYCISSTF 216
                           +PNGK+IL  TLDN L+LW+YS  K LKTY+G+ N KYCI + F
Sbjct: 188 KTLIDDDNPPVSFVKFSPNGKYILAATLDNDLKLWDYSKGKCLKTYTGHKNEKYCIFANF 247
Query: 217 SVTNGKYIVS-----------------------HRDPVISVASHPAKNIIASGALDNDRT 253
           SVT GK+IVS                       H D VIS A HP +NIIAS AL+ND+T
Sbjct: 248 SVTGGKWIVSGSEDNMVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKT 307
Query: 254 MKIWTQE 260
           +K+W  +
Sbjct: 308 IKLWKSD 314

>pdb|2YMU|A Chain A, Structure Of A Highly Repetitive Propeller Structure Length = 577

Iteration: 1
 Score = 97.8 bits (242), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 81/315 (25%), Positives = 149/315 (47%), Gaps = 68/315 (21%)
Query: 2   SSDRSLESF-RPYTLTQTLNGHLRAVSYVKFSHDGRLLTSSSAEKTLLTYSLSSISNFDS 60
           S D++++ + R   L QTL GH  +V  V FS DG+ + S+S +KT+  ++ +       
Sbjct: 76  SDDKTVKLWNRNGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNRNG------ 129
Query: 61  TPPSPLQKFTGHEQGI---------------SDLATIRLWDVPTATSLKTLIGHTNYVFC 105
                LQ  TGH   +               SD  T++LW+      L+TL GH++ V+ 
Sbjct: 130 ---QLLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWN-RNGQLLQTLTGHSSSVWG 185
Query: 106 INFNPQSNRIVSDTFNETIRIWDIKTGKCLKVLPAHSDPVTAIDFNRDGTMIVTSSYDGL 165
           + F+P    I S + ++T+++W+ + G+ L+ L  HS  V  + F+ DG  I ++S D  
Sbjct: 186 VAFSPDGQTIASASDDKTVKLWN-RNGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKT 244
Query: 166 YRILD-------------------ASTPNGKFILVGTLDNTLRLWNYSTRKILKTYSGYT 206
            ++ +                   A  P+G+ I   + D T++LWN +  ++L+T +G++
Sbjct: 245 VKLWNRNGQLLQTLTGHSSSVNGVAFRPDGQTIASASDDKTVKLWNRNG-QLLQTLTGHS 303
Query: 207 NSKYCIS-----STFSVT-----------NGKY---IVSHRDPVISVASHPAKNIIASGA 247
           +S + ++      T +             NG++   +  H   V  VA  P    IAS +
Sbjct: 304 SSVWGVAFSPDGQTIASASDDKTVKLWNRNGQHLQTLTGHSSSVWGVAFSPDGQTIASAS 363
Query: 248 LDNDRTMKIWTQEKE 262
             +D+T+K+W +  +
Sbjct: 364 --DDKTVKLWNRNGQ 376

>pdb|1VYH|C Chain C, Paf-Ah Holoenzyme: Lis1ALFA2 Length = 410

Iteration: 1
 Score = 89.7 bits (221), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 71/285 (24%), Positives = 120/285 (42%), Gaps = 61/285 (21%)
Query: 15  LTQTLNGHLRAVSYVKFSHDGRLLTSSSAEKTLLTYSLSSISNFDSTPPSPLQKFTGHEQ 74
             +TL GH  +V  + F H G+LL S SA+   +T  L     F+      ++   GH+ 
Sbjct: 142 FERTLKGHTDSVQDISFDHSGKLLASCSAD---MTIKLWDFQGFEC-----IRTMHGHDH 193
Query: 75  GISDLA---------------TIRLWDVPTATSLKTLIGHTNYVFCINFNPQSNRIVSDT 119
            +S ++               TI++W+V T   +KT  GH  +V  +  N     I S +
Sbjct: 194 NVSSVSIMPNGDHIVSASRDKTIKMWEVQTGYCVKTFTGHREWVRMVRPNQDGTLIASCS 253
Query: 120 FNETIRIWDIKTGKCLKVLPAHSDPVTAIDFNRDGTMIVTSSYDGLYRILDASTPN---- 175
            ++T+R+W + T +C   L  H   V  I +  +      SSY  +     + T      
Sbjct: 254 NDQTVRVWVVATKECKAELREHRHVVECISWAPE------SSYSSISEATGSETKKSGKP 307
Query: 176 GKFILVGTLDNTLRLWNYSTRKILKTYSGYTNSKYCISSTFSVTNGKYIVS--------- 226
           G F+L G+ D T+++W+ ST   L T  G+ N    +      + GK+I+S         
Sbjct: 308 GPFLLSGSRDKTIKMWDVSTGMCLMTLVGHDN---WVRGVLFHSGGKFILSCADDKTLRV 364
Query: 227 --------------HRDPVISVASHPAKNIIASGALDNDRTMKIW 257
                         H   V S+  H     + +G++  D+T+K+W
Sbjct: 365 WDYKNKRCMKTLNAHEHFVTSLDFHKTAPYVVTGSV--DQTVKVW 407

>pdb|1VYH|C Chain C, Paf-Ah Holoenzyme: Lis1ALFA2 Length = 410

Iteration: 1
 Score = 65.9 bits (159), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 47/191 (24%), Positives = 83/191 (43%), Gaps = 44/191 (23%)
Query: 87  VPTATSLKTLIGHTNYVFCINFNPQSNRIVSDTFNETIRIWDIKTGKCLKVLPAHSDPVT 146
           +P       L GH + V  + F+P  + +VS + + TI++WD +TG   + L  H+D V 
Sbjct: 95  IPRPPEKYALSGHRSPVTRVIFHPVFSVMVSASEDATIKVWDYETGDFERTLKGHTDSVQ 154
Query: 147 AIDFNRDGTMIVTSSYDGLYRILD--------------------ASTPNGKFILVGTLDN 186
            I F+  G ++ + S D   ++ D                    +  PNG  I+  + D 
Sbjct: 155 DISFDHSGKLLASCSADMTIKLWDFQGFECIRTMHGHDHNVSSVSIMPNGDHIVSASRDK 214
Query: 187 TLRLWNYSTRKILKTYSGYTNSKYCISSTFSVTNGKYIVSHRDPVISVASHPAKNIIASG 246
           T+++W   T   +KT++G                      HR+ V  V  +    +IAS 
Sbjct: 215 TIKMWEVQTGYCVKTFTG----------------------HREWVRMVRPNQDGTLIASC 252
Query: 247 ALDNDRTMKIW 257
           +  ND+T+++W
Sbjct: 253 S--NDQTVRVW 261

>pdb|2OVP|B Chain B, Structure Of The Skp1-Fbw7 Complex Length = 445

Iteration: 1
 Score = 87.4 bits (215), Expect = 8e-18,   Method: Compositional matrix adjust.
 Identities = 69/273 (25%), Positives = 122/273 (44%), Gaps = 72/273 (26%)
Query: 17  QTLNGHL-RAVSYVKFSHDGRLLTSSSAEKTLLTYSLSSISNFDSTPPSPLQKFTGHEQG 75
           + L GH    ++ ++F   G  + S S + TL  +S        +     L+   GH  G
Sbjct: 112 KVLKGHDDHVITCLQFC--GNRIVSGSDDNTLKVWS--------AVTGKCLRTLVGHTGG 161
Query: 76  I-------------SDLATIRLWDVPTATSLKTLIGHTNYVFCINFNPQSNRIVSDTFNE 122
           +             S   T+++W+  T   + TL GHT+ V C++ + +  R+VS + + 
Sbjct: 162 VWSSQMRDNIIISGSTDRTLKVWNAETGECIHTLYGHTSTVRCMHLHEK--RVVSGSRDA 219
Query: 123 TIRIWDIKTGKCLKVLPAHSDPVTAIDFNRDGTMIVTSSYDGLYRILDASTP-------- 174
           T+R+WDI+TG+CL VL  H   V  + +  DG  +V+ +YD + ++ D  T         
Sbjct: 220 TLRVWDIETGQCLHVLMGHVAAVRCVQY--DGRRVVSGAYDFMVKVWDPETETCLHTLQG 277
Query: 175 ----------NGKFILVGTLDNTLRLWNYSTRKILKTYSGYTNSKYCISSTFSVTNGKYI 224
                     +G  ++ G+LD ++R+W+  T   + T +G+           S+T+G  +
Sbjct: 278 HTNRVYSLQFDGIHVVSGSLDTSIRVWDVETGNCIHTLTGHQ----------SLTSGMEL 327
Query: 225 VSHRDPVISVASHPAKNIIASGALDNDRTMKIW 257
                           NI+ SG  + D T+KIW
Sbjct: 328 --------------KDNILVSG--NADSTVKIW 344

>pdb|1ERJ|A Chain A, Crystal Structure Of The C-Terminal Wd40 Domain Of Tup1 Length = 393

Iteration: 1
 Score = 83.2 bits (204), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 78/296 (26%), Positives = 123/296 (41%), Gaps = 75/296 (25%)
Query: 22  HLRAVSYVKFSHDGRLLTSSSAEKTLLTYSLSSIS------------------NFDSTPP 63
           H   V  VKFS+DG  L ++   KT   Y +S  S                  N  S+P 
Sbjct: 63  HTSVVCCVKFSNDGEYL-ATGCNKTTQVYRVSDGSLVARLSDDSAANKDPENLNTSSSPS 121
Query: 64  S----------PLQKF--TGHEQGISDLATIRLWDVPTATSLKTLIGHTNYVFCINFNPQ 111
           S          P  KF  TG E  +     IR+WD+     +  L GH   ++ +++ P 
Sbjct: 122 SDLYIRSVCFSPDGKFLATGAEDRL-----IRIWDIENRKIVMILQGHEQDIYSLDYFPS 176
Query: 112 SNRIVSDTFNETIRIWDIKTGKCLKVLPAHSDPVTAIDFNRDGTMIVTSSYDGLYRILDA 171
            +++VS + + T+RIWD++TG+C   L       T      DG  I   S D   R+ D+
Sbjct: 177 GDKLVSGSGDRTVRIWDLRTGQCSLTLSIEDGVTTVAVSPGDGKYIAAGSLDRAVRVWDS 236
Query: 172 STP---------------------------NGKFILVGTLDNTLRLWNYSTRKILKTYSG 204
            T                            +G+ ++ G+LD +++LWN      L+  + 
Sbjct: 237 ETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSLDRSVKLWN------LQNANN 290
Query: 205 YTNSKYCISSTFSVTNGKYIVSHRDPVISVASHPAKNIIASGALDNDRTMKIWTQE 260
            ++SK   S T  VT     + H+D V+SVA+      I SG+   DR +  W ++
Sbjct: 291 KSDSKTPNSGTCEVT----YIGHKDFVLSVATTQNDEYILSGS--KDRGVLFWDKK 340

>pdb|1TRJ|A Chain A, Homology Model Of Yeast Rack1 Protein Fitted Into 11.7a Cryo-em Map Of Yeast 80s Ribosome Length = 314

Iteration: 1
 Score = 77.8 bits (190), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 59/240 (24%), Positives = 106/240 (44%), Gaps = 46/240 (19%)
Query: 7   LESFRPYTLTQTLNGHLRAVSYVKFSHDG-RLLTSSSAEKTLLTYSLSSISNFDSTPPSP 65
           + S     L  TL GH   V+ +  S     LL S+S +KTL+++ L+     D     P
Sbjct: 1   MASNEVLVLRGTLEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGD---DQKFGVP 57
Query: 66  LQKFTGHEQGISDLA---------------TIRLWDVPTATSLKTLIGHTNYVFCINFNP 110
           ++ F GH   + D                 T+RLWDV T  + +  +GH + V  ++ + 
Sbjct: 58  VRSFKGHSHIVQDCTLTADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVDIDK 117
Query: 111 QSNRIVSDTFNETIRIWDIKTGKCLKVLPAHSDPVTAIDF------NRDGTMIVTSSYDG 164
           +++ I+S + ++TI++W IK G+CL  L  H+D V+ +        + D   I+++  D 
Sbjct: 118 KASMIISGSRDKTIKVWTIK-GQCLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDK 176
Query: 165 LYRILD--------------------ASTPNGKFILVGTLDNTLRLWNYSTRKILKTYSG 204
           + +  +                     ++P+G  I     D  + LWN + +K + T S 
Sbjct: 177 MVKAWNLNQFQIEADFIGHNSNINTLTASPDGTLIASAGKDGEIMLWNLAAKKAMYTLSA 236

>pdb|3IZB|AA Chain a, Localization Of The Small Subunit Ribosomal Proteins Into A 6.1 A Cryo-Em Map Of Saccharomyces Cerevisiae Translating 80s Ribosome Length = 319

Iteration: 1
 Score = 77.8 bits (190), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 59/240 (24%), Positives = 106/240 (44%), Gaps = 46/240 (19%)
Query: 7   LESFRPYTLTQTLNGHLRAVSYVKFSHDG-RLLTSSSAEKTLLTYSLSSISNFDSTPPSP 65
           + S     L  TL GH   V+ +  S     LL S+S +KTL+++ L+     D     P
Sbjct: 1   MASNEVLVLRGTLEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGD---DQKFGVP 57
Query: 66  LQKFTGHEQGISDLA---------------TIRLWDVPTATSLKTLIGHTNYVFCINFNP 110
           ++ F GH   + D                 T+RLWDV T  + +  +GH + V  ++ + 
Sbjct: 58  VRSFKGHSHIVQDCTLTADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVDIDK 117
Query: 111 QSNRIVSDTFNETIRIWDIKTGKCLKVLPAHSDPVTAIDF------NRDGTMIVTSSYDG 164
           +++ I+S + ++TI++W IK G+CL  L  H+D V+ +        + D   I+++  D 
Sbjct: 118 KASMIISGSRDKTIKVWTIK-GQCLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDK 176
Query: 165 LYRILD--------------------ASTPNGKFILVGTLDNTLRLWNYSTRKILKTYSG 204
           + +  +                     ++P+G  I     D  + LWN + +K + T S 
Sbjct: 177 MVKAWNLNQFQIEADFIGHNSNINTLTASPDGTLIASAGKDGEIMLWNLAAKKAMYTLSA 236

>pdb|3RFG|A Chain A, Crystal Structure Of The Yeast Rack1 Dimer In Space Group P63 Length = 319

Iteration: 1
 Score = 77.8 bits (190), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 58/232 (25%), Positives = 104/232 (44%), Gaps = 46/232 (19%)
Query: 15  LTQTLNGHLRAVSYVKFSHDG-RLLTSSSAEKTLLTYSLSSISNFDSTPPSPLQKFTGHE 73
           L  TL GH   V+ +  S     LL S+S +KTL+++ L+     D     P++ F GH 
Sbjct: 9   LRGTLEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGD---DQKFGVPVRSFKGHS 65
Query: 74  QGISDLA---------------TIRLWDVPTATSLKTLIGHTNYVFCINFNPQSNRIVSD 118
             + D                 T+RLWDV T  + +  +GH + V  ++ + +++ I+S 
Sbjct: 66  HIVQDCTLTADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVDIDKKASMIISG 125
Query: 119 TFNETIRIWDIKTGKCLKVLPAHSDPVTAIDF------NRDGTMIVTSSYDGLYRILD-- 170
           + ++TI++W IK G+CL  L  H+D V+ +        + D   I+++  D + +  +  
Sbjct: 126 SRDKTIKVWTIK-GQCLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLN 184
Query: 171 ------------------ASTPNGKFILVGTLDNTLRLWNYSTRKILKTYSG 204
                              ++P+G  I     D  + LWN + +K + T S 
Sbjct: 185 QFQIEADFIGHNSNINTLTASPDGTLIASAGKDGEIMLWNLAAKKAMYTLSA 236

>pdb|3RFH|A Chain A, Crystal Structure Of The Yeast Rack1 Dimer In Space Group P21 Length = 319

Iteration: 1
 Score = 77.8 bits (190), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 58/232 (25%), Positives = 104/232 (44%), Gaps = 46/232 (19%)
Query: 15  LTQTLNGHLRAVSYVKFSHDG-RLLTSSSAEKTLLTYSLSSISNFDSTPPSPLQKFTGHE 73
           L  TL GH   V+ +  S     LL S+S +KTL+++ L+     D     P++ F GH 
Sbjct: 9   LRGTLEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGD---DQKFGVPVRSFKGHS 65
Query: 74  QGISDLA---------------TIRLWDVPTATSLKTLIGHTNYVFCINFNPQSNRIVSD 118
             + D                 T+RLWDV T  + +  +GH + V  ++ + +++ I+S 
Sbjct: 66  HIVQDCTLTADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVDIDKKASMIISG 125
Query: 119 TFNETIRIWDIKTGKCLKVLPAHSDPVTAIDF------NRDGTMIVTSSYDGLYRILD-- 170
           + ++TI++W IK G+CL  L  H+D V+ +        + D   I+++  D + +  +  
Sbjct: 126 SRDKTIKVWTIK-GQCLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLN 184
Query: 171 ------------------ASTPNGKFILVGTLDNTLRLWNYSTRKILKTYSG 204
                              ++P+G  I     D  + LWN + +K + T S 
Sbjct: 185 QFQIEADFIGHNSNINTLTASPDGTLIASAGKDGEIMLWNLAAKKAMYTLSA 236

>pdb|3JYV|R Chain R, Structure Of The 40s Rrna And Proteins And PE TRNA FOR EUKARYOTIC Ribosome Based On Cryo-Em Map Of Thermomyces Lanuginosus Ribosome At 8.9a Resolution Length = 313

Iteration: 1
 Score = 77.8 bits (190), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 58/232 (25%), Positives = 104/232 (44%), Gaps = 46/232 (19%)
Query: 15  LTQTLNGHLRAVSYVKFSHDG-RLLTSSSAEKTLLTYSLSSISNFDSTPPSPLQKFTGHE 73
           L  TL GH   V+ +  S     LL S+S +KTL+++ L+     D     P++ F GH 
Sbjct: 3   LRGTLEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGD---DQKFGVPVRSFKGHS 59
Query: 74  QGISDLA---------------TIRLWDVPTATSLKTLIGHTNYVFCINFNPQSNRIVSD 118
             + D                 T+RLWDV T  + +  +GH + V  ++ + +++ I+S 
Sbjct: 60  HIVQDCTLTADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVDIDKKASMIISG 119
Query: 119 TFNETIRIWDIKTGKCLKVLPAHSDPVTAIDF------NRDGTMIVTSSYDGLYRILD-- 170
           + ++TI++W IK G+CL  L  H+D V+ +        + D   I+++  D + +  +  
Sbjct: 120 SRDKTIKVWTIK-GQCLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLN 178
Query: 171 ------------------ASTPNGKFILVGTLDNTLRLWNYSTRKILKTYSG 204
                              ++P+G  I     D  + LWN + +K + T S 
Sbjct: 179 QFQIEADFIGHNSNINTLTASPDGTLIASAGKDGEIMLWNLAAKKAMYTLSA 230

>pdb|1P22|A Chain A, Structure Of A Beta-Trcp1-Skp1-Beta-Catenin Complex: Destruction Motif Binding And Lysine Specificity On The Scfbeta-Trcp1 Ubiquitin Ligase Length = 435

Iteration: 1
 Score = 75.1 bits (183), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 54/198 (27%), Positives = 93/198 (46%), Gaps = 36/198 (18%)
Query: 15  LTQTLNGHLRAVSYVKFSHDGRLLTSSSAEKTLLTYSLSSISNFDSTPPSPL---QKFTG 71
           +  TL  H  AV +++F+ +G ++T S            SI+ +D   P+ +   +   G
Sbjct: 205 MLNTLIHHCEAVLHLRFN-NGMMVTCSKDR---------SIAVWDMASPTDITLRRVLVG 254
Query: 72  HEQGI-------------SDLATIRLWDVPTATSLKTLIGHTNYVFCINFNPQSNRIVSD 118
           H   +             S   TI++W+  T   ++TL GH   + C+ +  +   +VS 
Sbjct: 255 HRAAVNVVDFDDKYIVSASGDRTIKVWNTSTCEFVRTLNGHKRGIACLQY--RDRLVVSG 312
Query: 119 TFNETIRIWDIKTGKCLKVLPAHSDPVTAIDFNRDGTMIVTSSYDGLYRI------LDAS 172
           + + TIR+WDI+ G CL+VL  H + V  I F  D   IV+ +YDG  ++      LD  
Sbjct: 313 SSDNTIRLWDIECGACLRVLEGHEELVRCIRF--DNKRIVSGAYDGKIKVWDLVAALDPR 370
Query: 173 TPNGKFILVGTLDNTLRL 190
            P G   L   ++++ R+
Sbjct: 371 APAGTLCLRTLVEHSGRV 388

>pdb|1P22|A Chain A, Structure Of A Beta-Trcp1-Skp1-Beta-Catenin Complex: Destruction Motif Binding And Lysine Specificity On The Scfbeta-Trcp1 Ubiquitin Ligase Length = 435

Iteration: 1
 Score = 73.6 bits (179), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 42/154 (27%), Positives = 76/154 (49%), Gaps = 25/154 (16%)
Query: 81  TIRLWDVPTATSLKTLIGHTNYVFCINFNPQSNRIVSDTFNETIRIWDIKTGKCLKVLPA 140
           TI++WD  T    + L GHT  V C+ ++ +   I++ + + T+R+WD+ TG+ L  L  
Sbjct: 154 TIKIWDKNTLECKRILTGHTGSVLCLQYDERV--IITGSSDSTVRVWDVNTGEMLNTLIH 211
Query: 141 HSDPVTAIDFNRDGTMIVTSSYDGLYRILDASTP---------------------NGKFI 179
           H + V  + FN    M+VT S D    + D ++P                     + K+I
Sbjct: 212 HCEAVLHLRFN--NGMMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDFDDKYI 269
Query: 180 LVGTLDNTLRLWNYSTRKILKTYSGYTNSKYCIS 213
           +  + D T+++WN ST + ++T +G+     C+ 
Sbjct: 270 VSASGDRTIKVWNTSTCEFVRTLNGHKRGIACLQ 303

>pdb|1P22|A Chain A, Structure Of A Beta-Trcp1-Skp1-Beta-Catenin Complex: Destruction Motif Binding And Lysine Specificity On The Scfbeta-Trcp1 Ubiquitin Ligase Length = 435

Iteration: 1
 Score = 56.6 bits (135), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 40/155 (25%), Positives = 78/155 (50%), Gaps = 9/155 (5%)
Query: 103 VFCINFNPQSNRIVSDTFNETIRIWDIKTGKCLKVLPAHSDPVTAIDFNRDGTMIVTSSY 162
           V+C+ ++ Q  +IVS   + TI+IWD  T +C ++L  H+  V  + +  D  +I+T S 
Sbjct: 136 VYCLQYDDQ--KIVSGLRDNTIKIWDKNTLECKRILTGHTGSVLCLQY--DERVIITGSS 191
Query: 163 DGLYRILDASTPNGKFILVGTLDNTLRLWNYSTRKILKTYSGYTNSKYCISSTFSVTNGK 222
           D   R+ D +T      L+   +  L L  ++   ++      + + + ++S   +T  +
Sbjct: 192 DSTVRVWDVNTGEMLNTLIHHCEAVLHL-RFNNGMMVTCSKDRSIAVWDMASPTDITLRR 250
Query: 223 YIVSHRDPVISVASHPAKNIIASGALDNDRTMKIW 257
            +V HR   ++V     K I+++     DRT+K+W
Sbjct: 251 VLVGHR-AAVNVVDFDDKYIVSASG---DRTIKVW 281

>pdb|3FRX|A Chain A, Crystal Structure Of The Yeast Orthologue Of Rack1, Asc1. Length = 319

Iteration: 1
 Score = 73.9 bits (180), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 58/232 (25%), Positives = 102/232 (43%), Gaps = 46/232 (19%)
Query: 15  LTQTLNGHLRAVSYVKFSHDG-RLLTSSSAEKTLLTYSLSSISNFDSTPPSPLQKFTGHE 73
           L  TL GH   V+ +  S     LL S+S +KTL+++ L+     D     P++ F GH 
Sbjct: 9   LRGTLEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGD---DQKFGVPVRSFKGHS 65
Query: 74  QGISDLA---------------TIRLWDVPTATSLKTLIGHTNYVFCINFNPQSNRIVSD 118
             + D                 T+RLWDV T  + +  +GH + V  ++ + +++ I+S 
Sbjct: 66  HIVQDCTLTADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVXSVDIDKKASXIISG 125
Query: 119 TFNETIRIWDIKTGKCLKVLPAHSDPVTAIDF------NRDGTMIVTSSYDGLYRILD-- 170
           + ++TI++W IK G+CL  L  H+D V+ +        + D   I+++  D   +  +  
Sbjct: 126 SRDKTIKVWTIK-GQCLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKXVKAWNLN 184
Query: 171 ------------------ASTPNGKFILVGTLDNTLRLWNYSTRKILKTYSG 204
                              ++P+G  I     D  + LWN + +K   T S 
Sbjct: 185 QFQIEADFIGHNSNINTLTASPDGTLIASAGKDGEIXLWNLAAKKAXYTLSA 236

>pdb|3ZEY|7 Chain 7, High-resolution Cryo-electron Microscopy Structure Of The Trypanosoma Brucei Ribosome Length = 318

Iteration: 1
 Score = 67.8 bits (164), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 53/199 (26%), Positives = 95/199 (47%), Gaps = 39/199 (19%)
Query: 2   SSDRSLESFRP----------YTL-TQTLNGHLRAVSYVKFSHDGRLLTSSSAEKTLLTY 50
           S D++L S+ P          Y L  + L GH   VS V  S++G    S+S + +L  +
Sbjct: 35  SRDKTLLSWGPNPDRHSSECSYGLPDRRLEGHSAFVSDVALSNNGNFAVSASWDHSLRLW 94
Query: 51  SLSSISNFDSTPPSPLQKFTGHEQGISDLA---------------TIRLWDVPTATSLKT 95
           +L +             KF GH + +  +A                +R+W+V     + T
Sbjct: 95  NLQN--------GQCQYKFLGHTKDVLSVAFSPDNRQIVSGGRDNALRVWNV-KGECMHT 145
Query: 96  LI--GHTNYVFCINFNPQSNR--IVSDTFNETIRIWDIKTGKCLKVLPAHSDPVTAIDFN 151
           L    HT++V C+ F+P  +   IVS  ++  +++WD+ TG+ +  L  H++ VT++  +
Sbjct: 146 LSRGAHTDWVSCVRFSPSLDAPVIVSGGWDNLVKVWDLATGRLVTDLKGHTNYVTSVTVS 205
Query: 152 RDGTMIVTSSYDGLYRILD 170
            DG++  +S  DG+ R+ D
Sbjct: 206 PDGSLCASSDKDGVARLWD 224

>pdb|3ZEY|7 Chain 7, High-resolution Cryo-electron Microscopy Structure Of The Trypanosoma Brucei Ribosome Length = 318

Iteration: 1
 Score = 52.8 bits (125), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 35/161 (21%), Positives = 69/161 (42%), Gaps = 25/161 (15%)
Query: 94  KTLIGHTNYVFCINFNPQSNRIVSDTFNETIRIWDIKTGKCLKVLPAHSDPVTAIDFNRD 153
           + L GH+ +V  +  +   N  VS +++ ++R+W+++ G+C      H+  V ++ F+ D
Sbjct: 61  RRLEGHSAFVSDVALSNNGNFAVSASWDHSLRLWNLQNGQCQYKFLGHTKDVLSVAFSPD 120
Query: 154 GTMIVTSSYDGLYRILDASTP-----------------------NGKFILVGTLDNTLRL 190
              IV+   D   R+ +                           +   I+ G  DN +++
Sbjct: 121 NRQIVSGGRDNALRVWNVKGECMHTLSRGAHTDWVSCVRFSPSLDAPVIVSGGWDNLVKV 180
Query: 191 WNYSTRKILKTYSGYTNSKYCISSTFSVTNGKYIVSHRDPV 231
           W+ +T +++    G+TN  Y  S T S        S +D V
Sbjct: 181 WDLATGRLVTDLKGHTN--YVTSVTVSPDGSLCASSDKDGV 219

>pdb|2ZKQ|AA Chain a, Structure Of A Mammalian Ribosomal 40s Subunit Within An 80s Complex Obtained By Docking Homology Models Of The Rna And Proteins Into An 8.7 A Cryo-Em Map Length = 317

Iteration: 1
 Score = 65.9 bits (159), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 57/231 (24%), Positives = 102/231 (44%), Gaps = 44/231 (19%)
Query: 14  TLTQTLNGHLRAVSYVKFSHD-GRLLTSSSAEKTLLTYSLSSISNFDSTPPSPLQKFTGH 72
           TL  TL GH   V+ +  +     ++ S+S +KT++ + L+        P   L+   GH
Sbjct: 6   TLRGTLKGHNGWVTQIATTPQFPDMILSASRDKTIIMWKLTRDETNYGIPQRALR---GH 62
Query: 73  EQGISDL---------------ATIRLWDVPTATSLKTLIGHTNYVFCINFNPQSNRIVS 117
              +SD+                T+RLWD+ T T+ +  +GHT  V  + F+  + +IVS
Sbjct: 63  SHFVSDVVISSDGQFALSGSWDGTLRLWDLTTGTTTRRFVGHTKDVLSVAFSSDNRQIVS 122
Query: 118 DTFNETIRIWDIKTGKCLKVL--PAHSDPVTAIDF--NRDGTMIVTSSYDGLYRILDAS- 172
            + ++TI++W+   G C   +   +HS+ V+ + F  N    +IV+  +D L ++ + + 
Sbjct: 123 GSRDKTIKLWNT-LGVCKYTVQDESHSEWVSCVRFSPNSSNPIIVSCGWDKLVKVWNLAN 181
Query: 173 -------------------TPNGKFILVGTLDNTLRLWNYSTRKILKTYSG 204
                              +P+G     G  D    LW+ +  K L T  G
Sbjct: 182 CKLKTNHIGHTGYLNTVTVSPDGSLCASGGKDGQAMLWDLNEGKHLYTLDG 232

>pdb|2ZKQ|AA Chain a, Structure Of A Mammalian Ribosomal 40s Subunit Within An 80s Complex Obtained By Docking Homology Models Of The Rna And Proteins Into An 8.7 A Cryo-Em Map Length = 317

Iteration: 1
 Score = 43.5 bits (101), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 40/146 (27%), Positives = 63/146 (43%), Gaps = 30/146 (20%)
Query: 95  TLIGHTNYVFCINFNPQ-SNRIVSDTFNETIRIWDIKT-----GKCLKVLPAHSDPVTAI 148
           TL GH  +V  I   PQ  + I+S + ++TI +W +       G   + L  HS  V+ +
Sbjct: 10  TLKGHNGWVTQIATTPQFPDMILSASRDKTIIMWKLTRDETNYGIPQRALRGHSHFVSDV 69
Query: 149 DFNRDGTMIVTSSYDGLYRILDASTPNGKFILVGTLDNTLRLWNYSTRKILKTYSGYTNS 208
             + DG                      +F L G+ D TLRLW+ +T    + + G+T  
Sbjct: 70  VISSDG----------------------QFALSGSWDGTLRLWDLTTGTTTRRFVGHT-- 105
Query: 209 KYCISSTFSVTNGKYIVSHRDPVISV 234
           K  +S  FS  N + +   RD  I +
Sbjct: 106 KDVLSVAFSSDNRQIVSGSRDKTIKL 131

>pdb|4AOW|A Chain A, Crystal Structure Of The Human Rack1 Protein At A Resolution Of 2.45 Angstrom Length = 340

Iteration: 1
 Score = 65.5 bits (158), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 57/231 (24%), Positives = 102/231 (44%), Gaps = 44/231 (19%)
Query: 14  TLTQTLNGHLRAVSYVKFSHD-GRLLTSSSAEKTLLTYSLSSISNFDSTPPSPLQKFTGH 72
           TL  TL GH   V+ +  +     ++ S+S +KT++ + L+        P   L+   GH
Sbjct: 29  TLRGTLKGHNGWVTQIATTPQFPDMILSASRDKTIIMWKLTRDETNYGIPQRALR---GH 85
Query: 73  EQGISDL---------------ATIRLWDVPTATSLKTLIGHTNYVFCINFNPQSNRIVS 117
              +SD+                T+RLWD+ T T+ +  +GHT  V  + F+  + +IVS
Sbjct: 86  SHFVSDVVISSDGQFALSGSWDGTLRLWDLTTGTTTRRFVGHTKDVLSVAFSSDNRQIVS 145
Query: 118 DTFNETIRIWDIKTGKCLKVL--PAHSDPVTAIDF--NRDGTMIVTSSYDGLYRILDAS- 172
            + ++TI++W+   G C   +   +HS+ V+ + F  N    +IV+  +D L ++ + + 
Sbjct: 146 GSRDKTIKLWNT-LGVCKYTVQDESHSEWVSCVRFSPNSSNPIIVSCGWDKLVKVWNLAN 204
Query: 173 -------------------TPNGKFILVGTLDNTLRLWNYSTRKILKTYSG 204
                              +P+G     G  D    LW+ +  K L T  G
Sbjct: 205 CKLKTNHIGHTGYLNTVTVSPDGSLCASGGKDGQAMLWDLNEGKHLYTLDG 255

>pdb|4AOW|A Chain A, Crystal Structure Of The Human Rack1 Protein At A Resolution Of 2.45 Angstrom Length = 340

Iteration: 1
 Score = 43.5 bits (101), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 40/146 (27%), Positives = 63/146 (43%), Gaps = 30/146 (20%)
Query: 95  TLIGHTNYVFCINFNPQ-SNRIVSDTFNETIRIWDI-----KTGKCLKVLPAHSDPVTAI 148
           TL GH  +V  I   PQ  + I+S + ++TI +W +       G   + L  HS  V+ +
Sbjct: 33  TLKGHNGWVTQIATTPQFPDMILSASRDKTIIMWKLTRDETNYGIPQRALRGHSHFVSDV 92
Query: 149 DFNRDGTMIVTSSYDGLYRILDASTPNGKFILVGTLDNTLRLWNYSTRKILKTYSGYTNS 208
             + DG                      +F L G+ D TLRLW+ +T    + + G+T  
Sbjct: 93  VISSDG----------------------QFALSGSWDGTLRLWDLTTGTTTRRFVGHT-- 128
Query: 209 KYCISSTFSVTNGKYIVSHRDPVISV 234
           K  +S  FS  N + +   RD  I +
Sbjct: 129 KDVLSVAFSSDNRQIVSGSRDKTIKL 154

>pdb|2XZM|R Chain R, Crystal Structure Of The Eukaryotic 40s Ribosomal Subunit In Complex With Initiation Factor 1. This File Contains The 40s Subunit And Initiation Factor For Molecule 1 Length = 343

Iteration: 1
 Score = 65.5 bits (158), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 57/228 (25%), Positives = 99/228 (43%), Gaps = 57/228 (25%)
Query: 19  LNGHLRAVSYV------KFSHDGRLLTSSSAEKTLLTYSLSSISNFDSTPPSPLQKFTGH 72
           L GH   V+ +      K + D  +L S S +KT++ + L      +     P +  TGH
Sbjct: 17  LEGHSDWVTSIVAGFSQKENEDSPVLISGSRDKTVMIWKLYEEEQ-NGYFGIPHKALTGH 75
Query: 73  EQGISDLA---------------TIRLWDVPTATSLKTLIGHTNYVFCINFNPQSNRIVS 117
              +SDLA               T+RLWD+ T T+ K  +GH + V+ + F+P + +I+S
Sbjct: 76  NHFVSDLALSQENCFAISSSWDKTLRLWDLRTGTTYKRFVGHQSEVYSVAFSPDNRQILS 135
Query: 118 DTFNETIRIWDIKTGKCLKVLPA----HSDPVTAIDFN---RDGTMI-------VTSSYD 163
                 I++W+I  G+C K   A    HSD V+ + ++   +    +        +  +D
Sbjct: 136 AGAEREIKLWNI-LGEC-KFSSAEKENHSDWVSCVRYSPIMKSANKVQPFAPYFASVGWD 193
Query: 164 GLYRILDAS-------------------TPNGKFILVGTLDNTLRLWN 192
           G  ++ + +                   +PNGK+I  G  D  L +W+
Sbjct: 194 GRLKVWNTNFQIRYTFKAHESNVNHLSISPNGKYIATGGKDKKLLIWD 241

>pdb|3OW8|A Chain A, Crystal Structure Of The Wd Repeat-Containing Protein 61 Length = 321

Iteration: 1
 Score = 62.8 bits (151), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 46/177 (25%), Positives = 78/177 (44%), Gaps = 11/177 (6%)
Query: 15  LTQTLNGHLRAVSYVKFSHDGRLLTSSSAEKTLLTYSLSSISNFDSTPPSPLQK----FT 70
           L  +L GH   V  V  SH   +  SSS +  +  + L +     S    P+      F+
Sbjct: 72  LQWSLEGHQLGVVSVDISHTLPIAASSSLDAHIRLWDLENGKQIKSIDAGPVDAWTLAFS 131
Query: 71  GHEQGIS---DLATIRLWDVPTATSLKTLIGHTNYVFCINFNPQSNRIVSDTFNETIRIW 127
              Q ++    +  + ++ V +     +L     ++  I ++P    + S   +  I I+
Sbjct: 132 PDSQYLATGTHVGKVNIFGVESGKKEYSLDTRGKFILSIAYSPDGKYLASGAIDGIINIF 191
Query: 128 DIKTGKCLKVLPAHSDPVTAIDFNRDGTMIVTSSYDGLYRILDASTPNGKFILVGTL 184
           DI TGK L  L  H+ P+ ++ F+ D  ++VT+S DG  +I D    N    L GTL
Sbjct: 192 DIATGKLLHTLEGHAMPIRSLTFSPDSQLLVTASDDGYIKIYDVQHAN----LAGTL 244

>pdb|3SHF|A Chain A, Crystal Structure Of The R265s Mutant Of Full-Length Murine Apaf-1 Length = 1256

Iteration: 1
 Score = 42.4 bits (98), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 42/190 (22%), Positives = 80/190 (42%), Gaps = 22/190 (11%)
Query: 18  TLNGHLRAVSYVKFSHDGRLLTSSSAEKTLLTYSLSSISNFDST-----------PPSPL 66
           T+ GH  +V++ +FS D  LL S SA+ TL  + + S +   S            PP  +
Sbjct: 745 TMFGHTNSVNHCRFSPDDELLASCSADGTLRLWDVRSANERKSINVKRFFLSSEDPPEDV 804
Query: 67  QKFT--------GHEQGISDLATIRLWDVPTATSLKTL-IGHTNYVFCINFNPQSNRIVS 117
           +           G +  ++    + L+D+ T+  L  +  GH + +   +F+P  +  V 
Sbjct: 805 EVIVKCCSWSADGDKIIVAAKNKVLLFDIHTSGLLAEIHTGHHSTIQYCDFSPYDHLAVI 864
Query: 118 DTFNETIRIWDIKTGKCLKVLPAHSDPVTAIDFNRDGTMIVTSSYDGLYRILDAS--TPN 175
                 + +W+I +   +     H   V  + F+ DG+  +T+S D   R+ +      N
Sbjct: 865 ALSQYCVELWNIDSRLKVADCRGHLSWVHGVMFSPDGSSFLTASDDQTIRVWETKKVCKN 924
Query: 176 GKFILVGTLD 185
              +L   +D
Sbjct: 925 SAIVLKQEID 934

>pdb|3SHF|A Chain A, Crystal Structure Of The R265s Mutant Of Full-Length Murine Apaf-1 Length = 1256

Iteration: 1
 Score = 51.6 bits (122), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 35/132 (26%), Positives = 60/132 (45%), Gaps = 22/132 (16%)
Query: 99  HTNYVFCINFNPQSNRIVSDTFNETIRIWDIKTGKCLKVLPAHSDPVTAIDFNRDGTMIV 158
           HT+ V+   F+    RI S   ++T++++  +TG+ L  + AH D V    F+ D + I 
Sbjct: 621 HTDAVYHACFSQDGQRIASCGADKTLQVFKAETGEKLLDIKAHEDEVLCCAFSSDDSYIA 680
Query: 159 TSSYDGLYRILDAST----------------------PNGKFILVGTLDNTLRLWNYSTR 196
           T S D   +I D++T                       N   +  G+ D  L+LW+ + +
Sbjct: 681 TCSADKKVKIWDSATGKLVHTYDEHSEQVNCCHFTNKSNHLLLATGSNDFFLKLWDLNQK 740
Query: 197 KILKTYSGYTNS 208
           +   T  G+TNS
Sbjct: 741 ECRNTMFGHTNS 752

>pdb|3SFZ|A Chain A, Crystal Structure Of Full-Length Murine Apaf-1 Length = 1249

Iteration: 1
 Score = 42.4 bits (98), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 42/190 (22%), Positives = 80/190 (42%), Gaps = 22/190 (11%)
Query: 18  TLNGHLRAVSYVKFSHDGRLLTSSSAEKTLLTYSLSSISNFDST-----------PPSPL 66
           T+ GH  +V++ +FS D  LL S SA+ TL  + + S +   S            PP  +
Sbjct: 738 TMFGHTNSVNHCRFSPDDELLASCSADGTLRLWDVRSANERKSINVKRFFLSSEDPPEDV 797
Query: 67  QKFT--------GHEQGISDLATIRLWDVPTATSLKTL-IGHTNYVFCINFNPQSNRIVS 117
           +           G +  ++    + L+D+ T+  L  +  GH + +   +F+P  +  V 
Sbjct: 798 EVIVKCCSWSADGDKIIVAAKNKVLLFDIHTSGLLAEIHTGHHSTIQYCDFSPYDHLAVI 857
Query: 118 DTFNETIRIWDIKTGKCLKVLPAHSDPVTAIDFNRDGTMIVTSSYDGLYRILDAS--TPN 175
                 + +W+I +   +     H   V  + F+ DG+  +T+S D   R+ +      N
Sbjct: 858 ALSQYCVELWNIDSRLKVADCRGHLSWVHGVMFSPDGSSFLTASDDQTIRVWETKKVCKN 917
Query: 176 GKFILVGTLD 185
              +L   +D
Sbjct: 918 SAIVLKQEID 927

>pdb|3SFZ|A Chain A, Crystal Structure Of Full-Length Murine Apaf-1 Length = 1249

Iteration: 1
 Score = 51.2 bits (121), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 35/132 (26%), Positives = 60/132 (45%), Gaps = 22/132 (16%)
Query: 99  HTNYVFCINFNPQSNRIVSDTFNETIRIWDIKTGKCLKVLPAHSDPVTAIDFNRDGTMIV 158
           HT+ V+   F+    RI S   ++T++++  +TG+ L  + AH D V    F+ D + I 
Sbjct: 614 HTDAVYHACFSQDGQRIASCGADKTLQVFKAETGEKLLDIKAHEDEVLCCAFSSDDSYIA 673
Query: 159 TSSYDGLYRILDAST----------------------PNGKFILVGTLDNTLRLWNYSTR 196
           T S D   +I D++T                       N   +  G+ D  L+LW+ + +
Sbjct: 674 TCSADKKVKIWDSATGKLVHTYDEHSEQVNCCHFTNKSNHLLLATGSNDFFLKLWDLNQK 733
Query: 197 KILKTYSGYTNS 208
           +   T  G+TNS
Sbjct: 734 ECRNTMFGHTNS 745

>pdb|3DM0|A Chain A, Maltose Binding Protein Fusion With Rack1 From A. Thaliana Length = 694

Iteration: 1
 Score = 61.2 bits (147), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 61/283 (21%), Positives = 117/283 (41%), Gaps = 70/283 (24%)
Query: 11  RPYTLTQT-LNGHLRAVSYVKFSHDGRLLTSSSAEKTLLTYSLSSISNFDSTPPSPLQKF 69
           + Y + Q  L GH   V  V  S DG+   S S +  L  + L++  +         ++F
Sbjct: 417 KAYGVAQRRLTGHSHFVEDVVLSSDGQFALSGSWDGELRLWDLAAGVS--------TRRF 468
Query: 70  TGHEQGISDLA---------------TIRLWDVPTATSLKTLI-----GHTNYVFCINFN 109
            GH + +  +A               TI+LW+  T    K  I     GH ++V C+ F+
Sbjct: 469 VGHTKDVLSVAFSLDNRQIVSASRDRTIKLWN--TLGECKYTISEGGEGHRDWVSCVRFS 526
Query: 110 PQSNR--IVSDTFNETIRIWDIKTGKCLKVLPAHSDPVTAIDFNRDGTMIVTSSYDGLYR 167
           P + +  IVS ++++T+++W++   K    L  H+  V+ +  + DG++  +   DG+  
Sbjct: 527 PNTLQPTIVSASWDKTVKVWNLSNCKLRSTLAGHTGYVSTVAVSPDGSLCASGGKDGVVL 586
Query: 168 ILDAS-------------------TPNGKFILVGTLDNTLRLWNYSTRKILKTY------ 202
           + D +                   +PN ++ L    ++ +++W+  ++ I++        
Sbjct: 587 LWDLAEGKKLYSLEANSVIHALCFSPN-RYWLCAATEHGIKIWDLESKSIVEDLKVDLKA 645
Query: 203 -------SGYTNSK----YCISSTFSVTNGKYIVSHRDPVISV 234
                  SG   +K    YC S  +S         + D VI V
Sbjct: 646 EAEKADNSGPAATKRKVIYCTSLNWSADGSTLFSGYTDGVIRV 688

>pdb|2PBI|B Chain B, The Multifunctional Nature Of Gbeta5RGS9 REVEALED FROM ITS CRYSTAL Structure Length = 354

Iteration: 1
 Score = 58.5 bits (140), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 42/187 (22%), Positives = 80/187 (42%), Gaps = 16/187 (8%)
Query: 80  ATIRLWDVPTATSLKTLIGHTNYVFCINFNPQ--SNRIVSDTFNETIRIWDIKTGKCLKV 137
            T  LWDV +   L++  GH   V C++  P    N  VS   ++   +WD+++G+C++ 
Sbjct: 176 GTCALWDVESGQLLQSFHGHGADVLCLDLAPSETGNTFVSGGCDKKAMVWDMRSGQCVQA 235
Query: 138 LPAHSDPVTAIDFNRDGTMIVTSSYDGLYRILD------ASTPNGKFILVGTLDNTLRLW 191
              H   V ++ +   G    + S D   R+ D       +  + + I+ G       L 
Sbjct: 236 FETHESDVNSVRYYPSGDAFASGSDDATCRLYDLRADREVAIYSKESIIFGASSVDFSL- 294
Query: 192 NYSTRKILKTYSGYTNSKYCISSTFSVTNGKYIVSHRDPVISVASHPAKNIIASGALDND 251
             S R +   Y+ YT + + +     V+    +  H + V ++   P      SG+ D+ 
Sbjct: 295 --SGRLLFAGYNDYTINVWDVLKGSRVS---ILFGHENRVSTLRVSPDGTAFCSGSWDH- 348
Query: 252 RTMKIWT 258
            T+++W 
Sbjct: 349 -TLRVWA 354

>pdb|3ODT|A Chain A, Crystal Structure Of Wd40 Beta Propeller Domain Of Doa1 Length = 313

Iteration: 1
 Score = 56.6 bits (135), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 49/175 (28%), Positives = 82/175 (46%), Gaps = 10/175 (5%)
Query: 2   SSDRSLESFRPYTLTQTLNGHLRAV---SYVKFSHDGRLLTSSSAEKTLLTYSLSSISNF 58
           S D++ + ++  +L   L  H  +V     V FS + + LT+S+ +   L  +   I  F
Sbjct: 121 SWDKTAKVWKEGSLVYNLQAHNASVWDAKVVSFSEN-KFLTASADKTIKLWQNDKVIKTF 179
Query: 59  DSTPPSPLQKFT----GHEQGISDLATIRLWDVPTATSLKTLIGHTNYVFCINFNPQSNR 114
                  ++       GH    S+   I+L D  T   L+T  GH ++V+CI   P  + 
Sbjct: 180 SGIHNDVVRHLAVVDDGHFISCSNDGLIKLVDXHTGDVLRTYEGHESFVYCIKLLPNGD- 238
Query: 115 IVSDTFNETIRIWDIKTGKCLKVLPAHSDPVTAIDFNRDGTMIVTSSYDGLYRIL 169
           IVS   + T+RIW  + G   +V+   +  + ++D   +G +IV SS D L RI 
Sbjct: 239 IVSCGEDRTVRIWSKENGSLKQVITLPAISIWSVDCXSNGDIIVGSS-DNLVRIF 292

>pdb|3ODT|A Chain A, Crystal Structure Of Wd40 Beta Propeller Domain Of Doa1 Length = 313

Iteration: 1
 Score = 45.1 bits (105), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 65/289 (22%), Positives = 112/289 (38%), Gaps = 69/289 (23%)
Query: 6   SLESFRPYTLTQTLNGHLRAV---------SYVKFSHDGRLLTSSSAEKTLLTYSLSSIS 56
            ++ F  Y L+ TL GH + V              S DG +   S  ++ L T   +   
Sbjct: 1   GIDPFTGYQLSATLKGHDQDVRDVVAVDDSKVASVSRDGTVRLWSKDDQWLGTVVYTGQG 60
Query: 57  NFDST---PPSPLQKFTGHEQGISDLATIRLWDVPTATSLKTLIGHTNYVFCINFNPQSN 113
             +S        L  F G +  I+    + L+       L TLIGH   V  ++F  Q  
Sbjct: 61  FLNSVCYDSEKELLLFGGKDTXIN---GVPLFATSGEDPLYTLIGHQGNVCSLSF--QDG 115
Query: 114 RIVSDTFNETIRIWDIKTGKCLKVLPAHSDPV---TAIDFNRDGTMIVTSSYDGLYRILD 170
            ++S ++++T ++W  K G  +  L AH+  V     + F+ +    +T+S D   ++  
Sbjct: 116 VVISGSWDKTAKVW--KEGSLVYNLQAHNASVWDAKVVSFSEN--KFLTASADKTIKLWQ 171
Query: 171 -------------------ASTPNGKFILVGTLDNTLRLWNYSTRKILKTYSGYTNSKYC 211
                              A   +G FI     D  ++L +  T  +L+TY G+ +  YC
Sbjct: 172 NDKVIKTFSGIHNDVVRHLAVVDDGHFISCSN-DGLIKLVDXHTGDVLRTYEGHESFVYC 230
Query: 212 ISSTFSVTNGKYIVSHRDPVISVASHPAKNIIASGALDNDRTMKIWTQE 260
           I                         P  +I++ G    DRT++IW++E
Sbjct: 231 IKLL----------------------PNGDIVSCG---EDRTVRIWSKE 254

>pdb|2YNO|A Chain A, Yeast Betaprime Cop 1-304h6 Length = 310

Iteration: 1
 Score = 43.5 bits (101), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 48/223 (21%), Positives = 84/223 (37%), Gaps = 52/223 (23%)
Query: 63  PSPLQKFTGHEQGI---SDLATIRLWDVPTATSLKTLIGHTNYVFCINFNPQSNRIVSDT 119
           P    KF   +  I   SD   IR+++  T   +     H +Y+  I  +P    ++S +
Sbjct: 57  PVRAGKFIARKNWIIVGSDDFRIRVFNYNTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGS 116
Query: 120 FNETIRIWDIKTGKCL-KVLPAHSDPVTAIDFN-RDGTMIVTSSYDGLYRI--LDASTPN 175
            + T+++W+ +    L +    H   V  + FN +D +   +   D   ++  L  STPN
Sbjct: 117 DDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPN 176
Query: 176 ---------------------GKFILVGTLDNTLRLWNYSTRKILKTYSGYTNSKYCISS 214
                                  +++  + D T+++W+Y T+  + T  G          
Sbjct: 177 FTLTTGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATLEG---------- 226
Query: 215 TFSVTNGKYIVSHRDPVISVASHPAKNIIASGALDNDRTMKIW 257
                       H   V     HP   II SG+   D T+KIW
Sbjct: 227 ------------HMSNVSFAVFHPTLPIIISGS--EDGTLKIW 255

>pdb|2YNN|A Chain A, Yeast Betaprime Cop 1-304 With Ktktn Motif Length = 304

Iteration: 1
 Score = 43.5 bits (101), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 48/223 (21%), Positives = 84/223 (37%), Gaps = 52/223 (23%)
Query: 63  PSPLQKFTGHEQGI---SDLATIRLWDVPTATSLKTLIGHTNYVFCINFNPQSNRIVSDT 119
           P    KF   +  I   SD   IR+++  T   +     H +Y+  I  +P    ++S +
Sbjct: 57  PVRAGKFIARKNWIIVGSDDFRIRVFNYNTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGS 116
Query: 120 FNETIRIWDIKTGKCL-KVLPAHSDPVTAIDFN-RDGTMIVTSSYDGLYRI--LDASTPN 175
            + T+++W+ +    L +    H   V  + FN +D +   +   D   ++  L  STPN
Sbjct: 117 DDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPN 176
Query: 176 ---------------------GKFILVGTLDNTLRLWNYSTRKILKTYSGYTNSKYCISS 214
                                  +++  + D T+++W+Y T+  + T  G          
Sbjct: 177 FTLTTGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATLEG---------- 226
Query: 215 TFSVTNGKYIVSHRDPVISVASHPAKNIIASGALDNDRTMKIW 257
                       H   V     HP   II SG+   D T+KIW
Sbjct: 227 ------------HMSNVSFAVFHPTLPIIISGS--EDGTLKIW 255

>pdb|2BCJ|B Chain B, Crystal Structure Of G Protein-coupled Receptor Kinase 2 In Complex With Galpha-q And Gbetagamma Subunits Length = 340

Iteration: 1
 Score = 55.1 bits (131), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 52/219 (23%), Positives = 88/219 (40%), Gaps = 34/219 (15%)
Query: 17  QTLNGHLRAVSYVKFSHDGRLLTSSSAEKTLLTYSLSSISNFDSTP------------PS 64
           +TL GHL  +  + +  D RLL S+S +  L+ +   + +   + P            PS
Sbjct: 49  RTLRGHLAKIYAMHWGTDSRLLVSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPS 108
Query: 65  PLQKFTGHEQGISDLATIRLWDVPTATSLKTLIGHTNYVFCINFNPQSNRIVSDTFNETI 124
                 G    I  +  ++  +     S + L GHT Y+ C  F    N+IV+ + + T 
Sbjct: 109 GNYVACGGLDNICSIYNLKTREGNVRVS-RELAGHTGYLSCCRF-LDDNQIVTSSGDTTC 166
Query: 125 RIWDIKTGKCLKVLPAHSDPVTAIDFNRDGTMIVTSSYDGLYRILDAST----------- 173
            +WDI+TG+       H+  V ++    D  + V+ + D   ++ D              
Sbjct: 167 ALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHE 226
Query: 174 ---------PNGKFILVGTLDNTLRLWNYSTRKILKTYS 203
                    PNG     G+ D T RL++    + L TYS
Sbjct: 227 SDINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYS 265

>pdb|2BCJ|B Chain B, Crystal Structure Of G Protein-coupled Receptor Kinase 2 In Complex With Galpha-q And Gbetagamma Subunits Length = 340

Iteration: 1
 Score = 54.3 bits (129), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 38/168 (22%), Positives = 64/168 (38%), Gaps = 25/168 (14%)
Query: 81  TIRLWDVPTATSLKTLIGHTNYVFCINFNPQSNRIVSDTFNETIRIWDIKTGKCLKVLPA 140
           T  LWD+ T     T  GHT  V  ++  P +   VS   + + ++WD++ G C +    
Sbjct: 165 TCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTG 224
Query: 141 HSDPVTAIDFNRDGTMIVTSSYDGLYRILD----------------------ASTPNGKF 178
           H   + AI F  +G    T S D   R+ D                      + + +G+ 
Sbjct: 225 HESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGRL 284
Query: 179 ILVGTLDNTLRLWNYSTRKILKTYSGYTNSKYCISST---FSVTNGKY 223
           +L G  D    +W+          +G+ N   C+  T    +V  G +
Sbjct: 285 LLAGYDDFNCNVWDALKADRAGVLAGHDNRVSCLGVTDDGMAVATGSW 332

>pdb|2YNP|A Chain A, Yeast Betaprime Cop 1-604 With Ktktn Motif Length = 604

Iteration: 1
 Score = 43.5 bits (101), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 49/223 (21%), Positives = 86/223 (38%), Gaps = 52/223 (23%)
Query: 63  PSPLQKFTGHEQGI---SDLATIRLWDVPTATSLKTLIGHTNYVFCINFNPQSNRIVSDT 119
           P    KF   +  I   SD   IR+++  T   +     H +Y+  I  +P    ++S +
Sbjct: 57  PVRAGKFIARKNWIIVGSDDFRIRVFNYNTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGS 116
Query: 120 FNETIRIWDIKTGKCL-KVLPAHSDPVTAIDFN-RDGTMIVTSSYDGLYRI--LDASTPN 175
            + T+++W+ +    L +    H   V  + FN +D +   +   D   ++  L  STPN
Sbjct: 117 DDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPN 176
Query: 176 -----GK----------------FILVGTLDNTLRLWNYSTRKILKTYSGYTNSKYCISS 214
                G+                +++  + D T+++W+Y T+  + T  G          
Sbjct: 177 FTLTTGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATLEG---------- 226
Query: 215 TFSVTNGKYIVSHRDPVISVASHPAKNIIASGALDNDRTMKIW 257
                       H   V     HP   II SG+   D T+KIW
Sbjct: 227 ------------HMSNVSFAVFHPTLPIIISGS--EDGTLKIW 255

>pdb|3SN6|B Chain B, Crystal Structure Of The Beta2 Adrenergic Receptor-Gs Protein Complex Length = 351

Iteration: 1
 Score = 55.1 bits (131), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 52/219 (23%), Positives = 88/219 (40%), Gaps = 34/219 (15%)
Query: 17  QTLNGHLRAVSYVKFSHDGRLLTSSSAEKTLLTYSLSSISNFDSTP------------PS 64
           +TL GHL  +  + +  D RLL S+S +  L+ +   + +   + P            PS
Sbjct: 60  RTLRGHLAKIYAMHWGTDSRLLVSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPS 119
Query: 65  PLQKFTGHEQGISDLATIRLWDVPTATSLKTLIGHTNYVFCINFNPQSNRIVSDTFNETI 124
                 G    I  +  ++  +     S + L GHT Y+ C  F    N+IV+ + + T 
Sbjct: 120 GNYVACGGLDNICSIYNLKTREGNVRVS-RELAGHTGYLSCCRF-LDDNQIVTSSGDTTC 177
Query: 125 RIWDIKTGKCLKVLPAHSDPVTAIDFNRDGTMIVTSSYDGLYRILDAST----------- 173
            +WDI+TG+       H+  V ++    D  + V+ + D   ++ D              
Sbjct: 178 ALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHE 237
Query: 174 ---------PNGKFILVGTLDNTLRLWNYSTRKILKTYS 203
                    PNG     G+ D T RL++    + L TYS
Sbjct: 238 SDINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYS 276

>pdb|3SN6|B Chain B, Crystal Structure Of The Beta2 Adrenergic Receptor-Gs Protein Complex Length = 351

Iteration: 1
 Score = 54.3 bits (129), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 38/168 (22%), Positives = 64/168 (38%), Gaps = 25/168 (14%)
Query: 81  TIRLWDVPTATSLKTLIGHTNYVFCINFNPQSNRIVSDTFNETIRIWDIKTGKCLKVLPA 140
           T  LWD+ T     T  GHT  V  ++  P +   VS   + + ++WD++ G C +    
Sbjct: 176 TCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTG 235
Query: 141 HSDPVTAIDFNRDGTMIVTSSYDGLYRILD----------------------ASTPNGKF 178
           H   + AI F  +G    T S D   R+ D                      + + +G+ 
Sbjct: 236 HESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGRL 295
Query: 179 ILVGTLDNTLRLWNYSTRKILKTYSGYTNSKYCISST---FSVTNGKY 223
           +L G  D    +W+          +G+ N   C+  T    +V  G +
Sbjct: 296 LLAGYDDFNCNVWDALKADRAGVLAGHDNRVSCLGVTDDGMAVATGSW 343

>pdb|1GG2|B Chain B, G Protein Heterotrimer Mutant Gi_alpha_1(G203a) Beta_1 Gamma_2 With Gdp Bound Length = 340

Iteration: 1
 Score = 55.1 bits (131), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 52/219 (23%), Positives = 88/219 (40%), Gaps = 34/219 (15%)
Query: 17  QTLNGHLRAVSYVKFSHDGRLLTSSSAEKTLLTYSLSSISNFDSTP------------PS 64
           +TL GHL  +  + +  D RLL S+S +  L+ +   + +   + P            PS
Sbjct: 49  RTLRGHLAKIYAMHWGTDSRLLVSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPS 108
Query: 65  PLQKFTGHEQGISDLATIRLWDVPTATSLKTLIGHTNYVFCINFNPQSNRIVSDTFNETI 124
                 G    I  +  ++  +     S + L GHT Y+ C  F    N+IV+ + + T 
Sbjct: 109 GNYVACGGLDNICSIYNLKTREGNVRVS-RELAGHTGYLSCCRF-LDDNQIVTSSGDTTC 166
Query: 125 RIWDIKTGKCLKVLPAHSDPVTAIDFNRDGTMIVTSSYDGLYRILDAST----------- 173
            +WDI+TG+       H+  V ++    D  + V+ + D   ++ D              
Sbjct: 167 ALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHE 226
Query: 174 ---------PNGKFILVGTLDNTLRLWNYSTRKILKTYS 203
                    PNG     G+ D T RL++    + L TYS
Sbjct: 227 SDINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYS 265

>pdb|1GG2|B Chain B, G Protein Heterotrimer Mutant Gi_alpha_1(G203a) Beta_1 Gamma_2 With Gdp Bound Length = 340

Iteration: 1
 Score = 54.3 bits (129), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 38/168 (22%), Positives = 64/168 (38%), Gaps = 25/168 (14%)
Query: 81  TIRLWDVPTATSLKTLIGHTNYVFCINFNPQSNRIVSDTFNETIRIWDIKTGKCLKVLPA 140
           T  LWD+ T     T  GHT  V  ++  P +   VS   + + ++WD++ G C +    
Sbjct: 165 TCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTG 224
Query: 141 HSDPVTAIDFNRDGTMIVTSSYDGLYRILD----------------------ASTPNGKF 178
           H   + AI F  +G    T S D   R+ D                      + + +G+ 
Sbjct: 225 HESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGRL 284
Query: 179 ILVGTLDNTLRLWNYSTRKILKTYSGYTNSKYCISST---FSVTNGKY 223
           +L G  D    +W+          +G+ N   C+  T    +V  G +
Sbjct: 285 LLAGYDDFNCNVWDALKADRAGVLAGHDNRVSCLGVTDDGMAVATGSW 332

>pdb|3MKQ|A Chain A, Crystal Structure Of Yeast AlphaBETAPRIME-Cop Subcomplex Of The Copi Vesicular Coat Length = 814

Iteration: 1
 Score = 43.5 bits (101), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 49/223 (21%), Positives = 86/223 (38%), Gaps = 52/223 (23%)
Query: 63  PSPLQKFTGHEQGI---SDLATIRLWDVPTATSLKTLIGHTNYVFCINFNPQSNRIVSDT 119
           P    KF   +  I   SD   IR+++  T   +     H +Y+  I  +P    ++S +
Sbjct: 57  PVRAGKFIARKNWIIVGSDDFRIRVFNYNTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGS 116
Query: 120 FNETIRIWDIKTGKCL-KVLPAHSDPVTAIDFN-RDGTMIVTSSYDGLYRI--LDASTPN 175
            + T+++W+ +    L +    H   V  + FN +D +   +   D   ++  L  STPN
Sbjct: 117 DDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPN 176
Query: 176 -----GK----------------FILVGTLDNTLRLWNYSTRKILKTYSGYTNSKYCISS 214
                G+                +++  + D T+++W+Y T+  + T  G          
Sbjct: 177 FTLTTGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATLEG---------- 226
Query: 215 TFSVTNGKYIVSHRDPVISVASHPAKNIIASGALDNDRTMKIW 257
                       H   V     HP   II SG+   D T+KIW
Sbjct: 227 ------------HMSNVSFAVFHPTLPIIISGS--EDGTLKIW 255

>pdb|3MKS|B Chain B, Crystal Structure Of Yeast Cdc4SKP1 IN COMPLEX WITH AN ALLOSTERIC Inhibitor Scf-I2 Length = 464

Iteration: 1
 Score = 52.8 bits (125), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 49/216 (22%), Positives = 85/216 (39%), Gaps = 54/216 (25%)
Query: 77  SDLATIRLWDVPTATSLKTLIGHTNYVFCINFNPQSNRIVSDTFNETIRIWDIKTGKCLK 136
           +D   IR++D      L  L GH   V+ + +      +VS + + T+R+WDIK G C  
Sbjct: 139 ADDKMIRVYDSINKKFLLQLSGHDGGVWALKY-AHGGILVSGSTDRTVRVWDIKKGCCTH 197
Query: 137 VLPAHSDPVTAIDF--NRDGTMIVTSSYDGLYRIL----DASTPN--------------- 175
           V   H+  V  +D    ++   IVT S D    +     ++S P+               
Sbjct: 198 VFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPE 257
Query: 176 ----------------------GKFILVGTLDNTLRLWNYSTRKILKTYSGYTNSKY--- 210
                                 G  ++ G+ DNTL +W+ +  K L   SG+T+  Y   
Sbjct: 258 ENPYFVGVLRGHMASVRTVSGHGNIVVSGSYDNTLIVWDVAQMKCLYILSGHTDRIYSTI 317
Query: 211 -------CISSTFSVTNGKYIVSHRDPVISVASHPA 239
                  CIS++   T   + + + + + ++  H A
Sbjct: 318 YDHERKRCISASMDTTIRIWDLENGELMYTLQGHTA 353

>pdb|1A0R|B Chain B, Heterotrimeric Complex Of PhosducinTRANSDUCIN BETA-Gamma Length = 340

Iteration: 1
 Score = 54.7 bits (130), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 52/219 (23%), Positives = 88/219 (40%), Gaps = 34/219 (15%)
Query: 17  QTLNGHLRAVSYVKFSHDGRLLTSSSAEKTLLTYSLSSISNFDSTP------------PS 64
           +TL GHL  +  + +  D RLL S+S +  L+ +   + +   + P            PS
Sbjct: 49  RTLRGHLAKIYAMHWGTDSRLLLSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPS 108
Query: 65  PLQKFTGHEQGISDLATIRLWDVPTATSLKTLIGHTNYVFCINFNPQSNRIVSDTFNETI 124
                 G    I  +  ++  +     S + L GHT Y+ C  F    N+IV+ + + T 
Sbjct: 109 GNYVACGGLDNICSIYNLKTREGNVRVS-RELAGHTGYLSCCRF-LDDNQIVTSSGDTTC 166
Query: 125 RIWDIKTGKCLKVLPAHSDPVTAIDFNRDGTMIVTSSYDGLYRILDAST----------- 173
            +WDI+TG+       H+  V ++    D  + V+ + D   ++ D              
Sbjct: 167 ALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHE 226
Query: 174 ---------PNGKFILVGTLDNTLRLWNYSTRKILKTYS 203
                    PNG     G+ D T RL++    + L TYS
Sbjct: 227 SDINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYS 265

>pdb|1A0R|B Chain B, Heterotrimeric Complex Of PhosducinTRANSDUCIN BETA-Gamma Length = 340

Iteration: 1
 Score = 54.3 bits (129), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 38/168 (22%), Positives = 64/168 (38%), Gaps = 25/168 (14%)
Query: 81  TIRLWDVPTATSLKTLIGHTNYVFCINFNPQSNRIVSDTFNETIRIWDIKTGKCLKVLPA 140
           T  LWD+ T     T  GHT  V  ++  P +   VS   + + ++WD++ G C +    
Sbjct: 165 TCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTG 224
Query: 141 HSDPVTAIDFNRDGTMIVTSSYDGLYRILD----------------------ASTPNGKF 178
           H   + AI F  +G    T S D   R+ D                      + + +G+ 
Sbjct: 225 HESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGRL 284
Query: 179 ILVGTLDNTLRLWNYSTRKILKTYSGYTNSKYCISST---FSVTNGKY 223
           +L G  D    +W+          +G+ N   C+  T    +V  G +
Sbjct: 285 LLAGYDDFNCNVWDALKADRAGVLAGHDNRVSCLGVTDDGMAVATGSW 332

>pdb|1GOT|B Chain B, Heterotrimeric Complex Of A Gt-AlphaGI-Alpha Chimera And The Gt-Beta-Gamma Subunits Length = 340

Iteration: 1
 Score = 54.3 bits (129), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 52/219 (23%), Positives = 88/219 (40%), Gaps = 34/219 (15%)
Query: 17  QTLNGHLRAVSYVKFSHDGRLLTSSSAEKTLLTYSLSSISNFDSTP------------PS 64
           +TL GHL  +  + +  D RLL S+S +  L+ +   + +   + P            PS
Sbjct: 49  RTLRGHLAKIYAMHWGTDSRLLLSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPS 108
Query: 65  PLQKFTGHEQGISDLATIRLWDVPTATSLKTLIGHTNYVFCINFNPQSNRIVSDTFNETI 124
                 G    I  +  ++  +     S + L GHT Y+ C  F    N+IV+ + + T 
Sbjct: 109 GNYVACGGLDNICSIYNLKTREGNVRVS-RELAGHTGYLSCCRF-LDDNQIVTSSGDTTC 166
Query: 125 RIWDIKTGKCLKVLPAHSDPVTAIDFNRDGTMIVTSSYDGLYRILDAST----------- 173
            +WDI+TG+       H+  V ++    D  + V+ + D   ++ D              
Sbjct: 167 ALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHE 226
Query: 174 ---------PNGKFILVGTLDNTLRLWNYSTRKILKTYS 203
                    PNG     G+ D T RL++    + L TYS
Sbjct: 227 SDINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYS 265

>pdb|1GOT|B Chain B, Heterotrimeric Complex Of A Gt-AlphaGI-Alpha Chimera And The Gt-Beta-Gamma Subunits Length = 340

Iteration: 1
 Score = 54.3 bits (129), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 38/168 (22%), Positives = 64/168 (38%), Gaps = 25/168 (14%)
Query: 81  TIRLWDVPTATSLKTLIGHTNYVFCINFNPQSNRIVSDTFNETIRIWDIKTGKCLKVLPA 140
           T  LWD+ T     T  GHT  V  ++  P +   VS   + + ++WD++ G C +    
Sbjct: 165 TCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTG 224
Query: 141 HSDPVTAIDFNRDGTMIVTSSYDGLYRILD----------------------ASTPNGKF 178
           H   + AI F  +G    T S D   R+ D                      + + +G+ 
Sbjct: 225 HESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGRL 284
Query: 179 ILVGTLDNTLRLWNYSTRKILKTYSGYTNSKYCISST---FSVTNGKY 223
           +L G  D    +W+          +G+ N   C+  T    +V  G +
Sbjct: 285 LLAGYDDFNCNVWDALKADRAGVLAGHDNRVSCLGVTDDGMAVATGSW 332

>pdb|2AQ5|A Chain A, Crystal Structure Of Murine Coronin-1 Length = 402

Iteration: 1
 Score = 53.1 bits (126), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 30/104 (28%), Positives = 55/104 (52%), Gaps = 10/104 (9%)
Query: 77  SDLATIRLWDVPTA-------TSLKTLIGHTNYVFCINFNPQS-NRIVSDTFNETIRIWD 128
           S+  T+ +W++P           + TL GHT  V  + ++P + N ++S   +  I +WD
Sbjct: 101 SEDCTVMVWEIPDGGLVLPLREPVITLEGHTKRVGIVAWHPTAQNVLLSAGXDNVILVWD 160
Query: 129 IKTGKCLKVL--PAHSDPVTAIDFNRDGTMIVTSSYDGLYRILD 170
           + TG  +  L    H D + ++D++RDG +I TS  D   R+++
Sbjct: 161 VGTGAAVLTLGPDVHPDTIYSVDWSRDGALICTSCRDKRVRVIE 204

>pdb|2B4E|A Chain A, Crystal Structure Of Murine Coronin-1: Monoclinic Form Length = 402

Iteration: 1
 Score = 53.1 bits (126), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 39/160 (24%), Positives = 67/160 (41%), Gaps = 30/160 (18%)
Query: 37  LLTSSSAEKTLLTYSLSSISNFDSTPPSPLQKFTGHEQGISDLA---------------- 80
           L+  +S     L   L      D   P       GH   + D+A                
Sbjct: 49  LICEASGGGAFLVLPLGKTGRVDKNVP----LVCGHTAPVLDIAWCPHNDNVIASGSEDC 104
Query: 81  TIRLWDVPTA-------TSLKTLIGHTNYVFCINFNPQS-NRIVSDTFNETIRIWDIKTG 132
           T+ +W++P           + TL GHT  V  + ++P + N ++S   +  I +WD+ TG
Sbjct: 105 TVMVWEIPDGGLVLPLREPVITLEGHTKRVGIVAWHPTAQNVLLSAGCDNVILVWDVGTG 164
Query: 133 KCLKVL--PAHSDPVTAIDFNRDGTMIVTSSYDGLYRILD 170
             +  L    H D + ++D++RDG +I TS  D   R+++
Sbjct: 165 AAVLTLGPDVHPDTIYSVDWSRDGALICTSCRDKRVRVIE 204

>pdb|1NEX|B Chain B, Crystal Structure Of Scskp1-Sccdc4-Cpd Peptide Complex Length = 464

Iteration: 1
 Score = 47.0 bits (110), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 51/228 (22%), Positives = 87/228 (38%), Gaps = 54/228 (23%)
Query: 5   RSLESFRPYTLTQTLNGHLRAVSYVKFSHDGRLLTSSSAEKTLLTYSLSSISNFDSTPPS 64
           R  +S     L Q L+GH   V  +K++H G +L S S ++T+  +        D     
Sbjct: 145 RVYDSINKKFLLQ-LSGHDGGVWALKYAHGG-ILVSGSTDRTVRVW--------DIKKGC 194
Query: 65  PLQKFTGHEQGISDL-----------------ATIRLWDVPTATSL-------------- 93
               F GH   +  L                  T+ +W +P  +S+              
Sbjct: 195 CTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFH 254
Query: 94  ---------KTLIGHTNYVFCINFNPQSNRIVSDTFNETIRIWDIKTGKCLKVLPAHSDP 144
                      L GH   V  ++     N +VS +++ T+ +WD+   KCL +L  H+D 
Sbjct: 255 TPEENPYFVGVLRGHXASVRTVS--GHGNIVVSGSYDNTLIVWDVAQXKCLYILSGHTDR 312
Query: 145 VTAIDFNRDGTMIVTSSYDGLYRILDASTPNGKFILVG--TLDNTLRL 190
           + +  ++ +    +++S D   RI D       + L G   L   LRL
Sbjct: 313 IYSTIYDHERKRCISASXDTTIRIWDLENGELXYTLQGHTALVGLLRL 360

>pdb|1NEX|B Chain B, Crystal Structure Of Scskp1-Sccdc4-Cpd Peptide Complex Length = 464

Iteration: 1
 Score = 52.4 bits (124), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 46/185 (24%), Positives = 73/185 (39%), Gaps = 32/185 (17%)
Query: 77  SDLATIRLWDVPTATSLKTLIGHTNYVFCINFNPQSNRIVSDTFNETIRIWDIKTGKCLK 136
           +D   IR++D      L  L GH   V+ + +      +VS + + T+R+WDIK G C  
Sbjct: 139 ADDKXIRVYDSINKKFLLQLSGHDGGVWALKY-AHGGILVSGSTDRTVRVWDIKKGCCTH 197
Query: 137 VLPAHSDPVTAIDFNRDGTMIVTSSYDGLYRILDASTPNGKFILVGTLDNTLRLWNYSTR 196
           V   H+  V  +D                         N K+I+ G+ DNTL +W     
Sbjct: 198 VFEGHNSTVRCLDI--------------------VEYKNIKYIVTGSRDNTLHVWKLPKE 237
Query: 197 KILKTYSGYTNSKYCISSTFSVTNGKYIV----SHRDPVISVASHPAKNIIASGALDNDR 252
             +  +    +      +        Y V     H   V +V+ H   NI+ SG+ DN  
Sbjct: 238 SSVPDHGEEHDYPLVFHTP---EENPYFVGVLRGHXASVRTVSGHG--NIVVSGSYDN-- 290
Query: 253 TMKIW 257
           T+ +W
Sbjct: 291 TLIVW 295

>pdb|1R5M|A Chain A, Crystal Structure Of The C-Terminal Wd40 Domain Of Sif2 Length = 425

Iteration: 1
 Score = 50.1 bits (118), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 27/71 (38%), Positives = 43/71 (60%), Gaps = 5/71 (7%)
Query: 89  TATSLKTLIGHTNYVFCINFNPQSNRIVSDTFNETIRIWDIKTGKCLKVLPAHSDPVTAI 148
           +A+S KT    TN V C+ ++   N IV+   N  +R+W+ KTG  L VL  H  P+ ++
Sbjct: 101 SASSGKT----TNQVTCLAWSHDGNSIVTGVENGELRLWN-KTGALLNVLNFHRAPIVSV 155
Query: 149 DFNRDGTMIVT 159
            +N+DGT I++
Sbjct: 156 KWNKDGTHIIS 166

>pdb|3IZ6|AA Chain a, Localization Of The Small Subunit Ribosomal Proteins Into A 5.5 A Cryo-Em Map Of Triticum Aestivum Translating 80s Ribosome Length = 380

Iteration: 1
 Score = 47.0 bits (110), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 55/240 (22%), Positives = 104/240 (43%), Gaps = 63/240 (26%)
Query: 15  LTQTLNGHLRAVSYVKF--SHDGRLLTSSSAEKTLLTYSLSS---ISNFDSTPPSPLQKF 69
           +++ L GH    S  ++    + RL+T S  ++T + + +++   IS F S  PS     
Sbjct: 149 VSRVLTGHKGYASSCQYVPDQETRLITGS-GDQTCVLWDVTTGQRISIFGSEFPS----- 202
Query: 70  TGHEQGISDLA----------------TIRLWDVP-TATSLKTLIGHTNYVFCINFNPQS 112
            GH   +  L+                T+RLWD+  T+ +++T  GH   +  + F P  
Sbjct: 203 -GHTADVLSLSINSLNANMFISGSCDTTVRLWDLRITSRAVRTYHGHEGDINSVKFFPDG 261
Query: 113 NRIVSDTFNETIRIWDIKTGKCLKVLPAHSDP-------VTAIDFNRDGTMI-------- 157
            R  + + + T R++D++TG  L+V     D        VT++ F+  G ++        
Sbjct: 262 QRFGTGSDDGTCRLFDMRTGHQLQVYNREPDRNDNELPIVTSVAFSISGRLLFAGYSNGD 321
Query: 158 -----------------VTSSYDGLYRILDASTPNGKFILVGTLDNTLRLWNYST-RKIL 199
                            + +S++G    L  S+ +G  +  G+ D  L++W +S  RKI+
Sbjct: 322 CYVWDTLLAEMVLNLGTLQNSHEGRISCLGLSS-DGSALCTGSWDKNLKIWAFSGHRKIV 380

>pdb|4GGA|A Chain A, Structural Analysis Of Human Cdc20 Supports Multi-Site Degron Recognition By ApcC Length = 420

Iteration: 1
 Score = 45.4 bits (106), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 39/175 (22%), Positives = 72/175 (41%), Gaps = 33/175 (18%)
Query: 18  TLNGHLRAVSYVKFSHDGRLLTSSSAEKTLLTYSLSSISNFDSTPPS----PLQKFTGHE 73
           TL+GH + V  ++++ DGR L S   +          ++ + S P      PLQ FT H+
Sbjct: 225 TLSGHSQEVCGLRWAPDGRHLASGGNDNL--------VNVWPSAPGEGGWVPLQTFTQHQ 276
Query: 74  QGISDLA------------------TIRLWDVPTATSLKTLIGHTNYVFCINFNPQSNRI 115
             +  +A                   IR+W+V +   L  +  H+  V  I ++P    +
Sbjct: 277 GAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLSAVDAHSQ-VCSILWSPHYKEL 335
Query: 116 VSDT--FNETIRIWDIKTGKCLKVLPAHSDPVTAIDFNRDGTMIVTSSYDGLYRI 168
           +S        + IW   T   +  L  H+  V ++  + DG  + +++ D   R+
Sbjct: 336 ISGHGFAQNQLVIWKYPTMAKVAELKGHTSRVLSLTMSPDGATVASAAADETLRL 390

>pdb|4GGC|A Chain A, Structural Analysis Of Human Cdc20 Supports Multi-Site Degron Recognition By ApcC Length = 318

Iteration: 1
 Score = 45.4 bits (106), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 39/175 (22%), Positives = 72/175 (41%), Gaps = 33/175 (18%)
Query: 18  TLNGHLRAVSYVKFSHDGRLLTSSSAEKTLLTYSLSSISNFDSTPPS----PLQKFTGHE 73
           TL+GH + V  ++++ DGR L S   +          ++ + S P      PLQ FT H+
Sbjct: 145 TLSGHSQEVCGLRWAPDGRHLASGGNDNL--------VNVWPSAPGEGGWVPLQTFTQHQ 196
Query: 74  QGISDLA------------------TIRLWDVPTATSLKTLIGHTNYVFCINFNPQSNRI 115
             +  +A                   IR+W+V +   L  +  H+  V  I ++P    +
Sbjct: 197 GAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLSAVDAHSQ-VCSILWSPHYKEL 255
Query: 116 VSDT--FNETIRIWDIKTGKCLKVLPAHSDPVTAIDFNRDGTMIVTSSYDGLYRI 168
           +S        + IW   T   +  L  H+  V ++  + DG  + +++ D   R+
Sbjct: 256 ISGHGFAQNQLVIWKYPTMAKVAELKGHTSRVLSLTMSPDGATVASAAADETLRL 310

>pdb|4GGD|A Chain A, Structural Analysis Of Human Cdc20 Supports Multisite Degron Recognition By ApcC. Length = 431

Iteration: 1
 Score = 45.1 bits (105), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 39/175 (22%), Positives = 72/175 (41%), Gaps = 33/175 (18%)
Query: 18  TLNGHLRAVSYVKFSHDGRLLTSSSAEKTLLTYSLSSISNFDSTPPS----PLQKFTGHE 73
           TL+GH + V  ++++ DGR L S   +          ++ + S P      PLQ FT H+
Sbjct: 236 TLSGHSQEVCGLRWAPDGRHLASGGNDNL--------VNVWPSAPGEGGWVPLQTFTQHQ 287
Query: 74  QGISDLA------------------TIRLWDVPTATSLKTLIGHTNYVFCINFNPQSNRI 115
             +  +A                   IR+W+V +   L  +  H+  V  I ++P    +
Sbjct: 288 GAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLSAVDAHSQ-VCSILWSPHYKEL 346
Query: 116 VSDT--FNETIRIWDIKTGKCLKVLPAHSDPVTAIDFNRDGTMIVTSSYDGLYRI 168
           +S        + IW   T   +  L  H+  V ++  + DG  + +++ D   R+
Sbjct: 347 ISGHGFAQNQLVIWKYPTMAKVAELKGHTSRVLSLTMSPDGATVASAAADETLRL 401

>pdb|1NR0|A Chain A, Two Seven-Bladed Beta-Propeller Domains Revealed By The Structure Of A C. Elegans Homologue Of Yeast Actin Interacting Protein 1 (Aip1). Length = 611

Iteration: 1
 Score = 44.7 bits (104), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 37/156 (23%), Positives = 68/156 (43%), Gaps = 30/156 (19%)
Query: 74  QGISDLATIRLWDVPTATSLKTLIGHTNYVFCINFNP-QSNRIVSDTFNETIRIWDIKTG 132
           +G      + L+D  T TS   L G    +  ++F P +  RI+S + + T+ I++    
Sbjct: 123 EGRERFGHVFLFD--TGTSNGNLTGQARAMNSVDFKPSRPFRIISGSDDNTVAIFEGPPF 180
Query: 133 KCLKVLPAHSDPVTAIDFNRDGTMIVTSSYDG---LYRILDAS----------------- 172
           K       H+  V ++ +N DG++  ++  DG   LY  +D +                 
Sbjct: 181 KFKSTFGEHTKFVHSVRYNPDGSLFASTGGDGTIVLYNGVDGTKTGVFEDDSLKNVAHSG 240
Query: 173 -------TPNGKFILVGTLDNTLRLWNYSTRKILKT 201
                  +P+G  I   + D T+++WN +T K+ KT
Sbjct: 241 SVFGLTWSPDGTKIASASADKTIKIWNVATLKVEKT 276

>pdb|4A11|B Chain B, Structure Of The Hsddb1-Hscsa Complex Length = 408

Iteration: 1
 Score = 43.5 bits (101), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 43/187 (22%), Positives = 85/187 (45%), Gaps = 29/187 (15%)
Query: 22  HLRAVSYVK-FSHDGRLLTSSSAEKTLLTYSLSSIS-----NFDSTPPSPLQKFTGHEQG 75
           H  +V  V+ + HD  + TSSS +KTL  +  +++      NF+ T  S        +  
Sbjct: 98  HRYSVETVQWYPHDTGMFTSSSFDKTLKVWDTNTLQTADVFNFEETVYSHHMSPVSTKHC 157
Query: 76  ISDLAT----IRLWDVPTATSLKTLIGHTNYVFCINFNPQSNRIVS-DTFNETIRIWDIK 130
           +  + T    ++L D+ + +    L GH   +  ++++P+ + I++  + +  +++WD++
Sbjct: 158 LVAVGTRGPKVQLCDLKSGSCSHILQGHRQEILAVSWSPRYDYILATASADSRVKLWDVR 217
Query: 131 TGK-CLKVLP---------------AHSDPVTAIDFNRDGTMIVTSSYDGLYRILDASTP 174
               CL  L                AH+  V  + F  DG  ++T   D   R+ ++S  
Sbjct: 218 RASGCLITLDQHNGKKSQAVESANTAHNGKVNGLCFTSDGLHLLTVGTDNRMRLWNSS-- 275
Query: 175 NGKFILV 181
           NG+  LV
Sbjct: 276 NGENTLV 282

>pdb|3JZN|A Chain A, Structure Of Eed In Apo Form Length = 366

Iteration: 1
 Score = 42.7 bits (99), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 39/168 (23%), Positives = 83/168 (49%), Gaps = 33/168 (19%)
Query: 36  RLLTS---SSAEKTLLTYSLSSISNFDSTPPSPLQKFTGHEQGISDLATIRLWDVPTATS 92
           RLL S   + A++   T + +    +DS    PL    G  +GI     IR+ +  T   
Sbjct: 58  RLLQSYVDADADENFYTCAWT----YDSNTSHPLLAVAG-SRGI-----IRIINPITMQC 107
Query: 93  LKTLIGHTNYVFCINFNPQS-NRIVSDTFNETIRIWDIKTGKCLKVLPAHSDPVTAIDFN 151
           +K  +GH N +  + F+P+  N ++S + +  +R+W+I+T   + +          ++ +
Sbjct: 108 IKHYVGHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQTDTLVAIF-------GGVEGH 160
Query: 152 RDGTMIVTSSYDGLYRILDASTPNGKFILVGTLDNTLRLWNYSTRKIL 199
           RD   ++++ YD L          G+ I+   +D++L+LW  ++++++
Sbjct: 161 RDE--VLSADYDLL----------GEKIMSCGMDHSLKLWRINSKRMM 196

>pdb|3JPX|A Chain A, Eed: A Novel Histone Trimethyllysine Binder Within The Eed-Ezh2 Polycomb Complex Length = 402

Iteration: 1
 Score = 42.7 bits (99), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 39/168 (23%), Positives = 83/168 (49%), Gaps = 33/168 (19%)
Query: 36  RLLTS---SSAEKTLLTYSLSSISNFDSTPPSPLQKFTGHEQGISDLATIRLWDVPTATS 92
           RLL S   + A++   T + +    +DS    PL    G  +GI     IR+ +  T   
Sbjct: 94  RLLQSYVDADADENFYTCAWT----YDSNTSHPLLAVAG-SRGI-----IRIINPITMQC 143
Query: 93  LKTLIGHTNYVFCINFNPQS-NRIVSDTFNETIRIWDIKTGKCLKVLPAHSDPVTAIDFN 151
           +K  +GH N +  + F+P+  N ++S + +  +R+W+I+T   + +          ++ +
Sbjct: 144 IKHYVGHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQTDTLVAIF-------GGVEGH 196
Query: 152 RDGTMIVTSSYDGLYRILDASTPNGKFILVGTLDNTLRLWNYSTRKIL 199
           RD   ++++ YD L          G+ I+   +D++L+LW  ++++++
Sbjct: 197 RD--EVLSADYDLL----------GEKIMSCGMDHSLKLWRINSKRMM 232

>pdb|2QXV|A Chain A, Structural Basis Of Ezh2 Recognition By Eed Length = 361

Iteration: 1
 Score = 42.7 bits (99), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 39/168 (23%), Positives = 83/168 (49%), Gaps = 33/168 (19%)
Query: 36  RLLTS---SSAEKTLLTYSLSSISNFDSTPPSPLQKFTGHEQGISDLATIRLWDVPTATS 92
           RLL S   + A++   T + +    +DS    PL    G  +GI     IR+ +  T   
Sbjct: 53  RLLQSYVDADADENFYTCAWT----YDSNTSHPLLAVAG-SRGI-----IRIINPITMQC 102
Query: 93  LKTLIGHTNYVFCINFNPQS-NRIVSDTFNETIRIWDIKTGKCLKVLPAHSDPVTAIDFN 151
           +K  +GH N +  + F+P+  N ++S + +  +R+W+I+T   + +          ++ +
Sbjct: 103 IKHYVGHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQTDTLVAIF-------GGVEGH 155
Query: 152 RDGTMIVTSSYDGLYRILDASTPNGKFILVGTLDNTLRLWNYSTRKIL 199
           RD   ++++ YD L          G+ I+   +D++L+LW  ++++++
Sbjct: 156 RDE--VLSADYDLL----------GEKIMSCGMDHSLKLWRINSKRMM 191

>pdb|3IIY|A Chain A, Crystal Structure Of Eed In Complex With A Trimethylated Histone H1k26 Peptide Length = 365

Iteration: 1
 Score = 42.7 bits (99), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 39/168 (23%), Positives = 83/168 (49%), Gaps = 33/168 (19%)
Query: 36  RLLTS---SSAEKTLLTYSLSSISNFDSTPPSPLQKFTGHEQGISDLATIRLWDVPTATS 92
           RLL S   + A++   T + +    +DS    PL    G  +GI     IR+ +  T   
Sbjct: 57  RLLQSYVDADADENFYTCAWT----YDSNTSHPLLAVAG-SRGI-----IRIINPITMQC 106
Query: 93  LKTLIGHTNYVFCINFNPQS-NRIVSDTFNETIRIWDIKTGKCLKVLPAHSDPVTAIDFN 151
           +K  +GH N +  + F+P+  N ++S + +  +R+W+I+T   + +          ++ +
Sbjct: 107 IKHYVGHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQTDTLVAIF-------GGVEGH 159
Query: 152 RDGTMIVTSSYDGLYRILDASTPNGKFILVGTLDNTLRLWNYSTRKIL 199
           RD   ++++ YD L          G+ I+   +D++L+LW  ++++++
Sbjct: 160 RDE--VLSADYDLL----------GEKIMSCGMDHSLKLWRINSKRMM 195

>pdb|3IIW|A Chain A, Crystal Structure Of Eed In Complex With A Trimethylated Histone H3k27 Peptide Length = 365

Iteration: 1
 Score = 42.7 bits (99), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 39/168 (23%), Positives = 83/168 (49%), Gaps = 33/168 (19%)
Query: 36  RLLTS---SSAEKTLLTYSLSSISNFDSTPPSPLQKFTGHEQGISDLATIRLWDVPTATS 92
           RLL S   + A++   T + +    +DS    PL    G  +GI     IR+ +  T   
Sbjct: 57  RLLQSYVDADADENFYTCAWT----YDSNTSHPLLAVAG-SRGI-----IRIINPITMQC 106
Query: 93  LKTLIGHTNYVFCINFNPQS-NRIVSDTFNETIRIWDIKTGKCLKVLPAHSDPVTAIDFN 151
           +K  +GH N +  + F+P+  N ++S + +  +R+W+I+T   + +          ++ +
Sbjct: 107 IKHYVGHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQTDTLVAIF-------GGVEGH 159
Query: 152 RDGTMIVTSSYDGLYRILDASTPNGKFILVGTLDNTLRLWNYSTRKIL 199
           RD   ++++ YD L          G+ I+   +D++L+LW  ++++++
Sbjct: 160 RDE--VLSADYDLL----------GEKIMSCGMDHSLKLWRINSKRMM 195

>pdb|2HES|X Chain X, Cytosolic Iron-sulphur Assembly Protein- 1 Length = 330

Iteration: 1
 Score = 42.7 bits (99), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 45/194 (23%), Positives = 78/194 (40%), Gaps = 57/194 (29%)
Query: 2   SSDRSLESFRPYTLTQTLNGHLRAVSYVKFSHDGRLLTSSSAEKTLLTYSLSSISNFDST 61
           S+DR+ E      L   + GH   V  V +S+DG  L + S +K++  +     S  +  
Sbjct: 90  SADRTFE----MDLLAIIEGHENEVKGVAWSNDGYYLATCSRDKSVWIWETDE-SGEEYE 144
Query: 62  PPSPLQKFTGHEQGISDLATIRLWDVPTATSLKTLIGHTNYVFCINFNPQSNRIVSDTFN 121
             S LQ+   H Q +                 K +I H          P    + S +++
Sbjct: 145 CISVLQE---HSQDV-----------------KHVIWH----------PSEALLASSSYD 174
Query: 122 ETIRIWD--IKTGKCLKVLPAHSDPVTAIDFNRDGTMIVTSSYDGLYRILDASTPNGKFI 179
           +T+RIW       +C+ VL  H   V + DF++          +G++R+           
Sbjct: 175 DTVRIWKDYDDDWECVAVLNGHEGTVWSSDFDK---------TEGVFRLCS--------- 216
Query: 180 LVGTLDNTLRLWNY 193
             G+ D+T+R+W Y
Sbjct: 217 --GSDDSTVRVWKY 228

>pdb|3MMY|A Chain A, Structural And Functional Analysis Of The Interaction Between The Nucleoporin Nup98 And The Mrna Export Factor Rae1 Length = 368

Iteration: 1
 Score = 42.4 bits (98), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 25/116 (21%), Positives = 57/116 (49%), Gaps = 26/116 (22%)
Query: 103 VFCINFNPQS---NRIVSDTFNETIRIWDIK-TGKCL-KVLPAHSDPVTAIDFNRDGTMI 157
           + C++F+P +   N +++ ++   +R W+++ +G+ + K    H+ PV  + ++ DG+ +
Sbjct: 42  IGCLSFSPPTLPGNFLIAGSWANDVRCWEVQDSGQTIPKAQQMHTGPVLDVCWSDDGSKV 101
Query: 158 VTSSYDGLYRILDAST---------------------PNGKFILVGTLDNTLRLWN 192
            T+S D   ++ D S+                     PN   ++ G+ D TL+ W+
Sbjct: 102 FTASCDKTAKMWDLSSNQAIQIAQHDAPVKTIHWIKAPNYSCVMTGSWDKTLKFWD 157

>pdb|3VL1|A Chain A, Crystal Structure Of Yeast Rpn14 Length = 420

Iteration: 1
 Score = 42.0 bits (97), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 34/150 (22%), Positives = 66/150 (44%), Gaps = 13/150 (8%)
Query: 82  IRLWDVPTATSLKTLIGHTNYVFCINFNPQSNRIVSDTFNETIRIWDIKTGKCLKVLPAH 141
           +++W V   ++ +TLIGH   V  I    +   ++S + + TIR+W+  TG  +      
Sbjct: 163 LKIWSVKDGSNPRTLIGHRATVTDIAIIDRGRNVLSASLDGTIRLWECGTGTTIHTFNRK 222
Query: 142 SDPVTAIDFNRDGTMIVTSSYDGLYRILDASTPN------GKFILVGTLDNTLRLWN-YS 194
            +P   +    +   +   +   L+ I  +   N      GK+++ G +   + + N +S
Sbjct: 223 ENPHDGV----NSIALFVGTDRQLHEISTSKKNNLEFGTYGKYVIAGHVSGVITVHNVFS 278
Query: 195 TRKILKTYSGYTNSKYCISSTFSVTNGKYI 224
             + ++  S +T S  C S T    N  YI
Sbjct: 279 KEQTIQLPSKFTCS--CNSLTVDGNNANYI 306

>pdb|3ACP|A Chain A, Crystal Structure Of Yeast Rpn14, A Chaperone Of The 19s Reg Particle Of The Proteasome Length = 417

Iteration: 1
 Score = 42.0 bits (97), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 34/150 (22%), Positives = 66/150 (44%), Gaps = 13/150 (8%)
Query: 82  IRLWDVPTATSLKTLIGHTNYVFCINFNPQSNRIVSDTFNETIRIWDIKTGKCLKVLPAH 141
           +++W V   ++ +TLIGH   V  I    +   ++S + + TIR+W+  TG  +      
Sbjct: 160 LKIWSVKDGSNPRTLIGHRATVTDIAIIDRGRNVLSASLDGTIRLWECGTGTTIHTFNRK 219
Query: 142 SDPVTAIDFNRDGTMIVTSSYDGLYRILDASTPN------GKFILVGTLDNTLRLWN-YS 194
            +P   +    +   +   +   L+ I  +   N      GK+++ G +   + + N +S
Sbjct: 220 ENPHDGV----NSIALFVGTDRQLHEISTSKKNNLEFGTYGKYVIAGHVSGVITVHNVFS 275
Query: 195 TRKILKTYSGYTNSKYCISSTFSVTNGKYI 224
             + ++  S +T S  C S T    N  YI
Sbjct: 276 KEQTIQLPSKFTCS--CNSLTVDGNNANYI 303

>pdb|3FM0|A Chain A, Crystal Structure Of Wd40 Protein Ciao1 Length = 345

Iteration: 1
 Score = 42.0 bits (97), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 42/196 (21%), Positives = 84/196 (42%), Gaps = 30/196 (15%)
Query: 82  IRLWDVPTATSL-KTLI--GHTNYVFCINFNPQSNRIVSDTFNETIRIWDIKTG--KCLK 136
           IR+W     + + K+++  GH   V  + ++P  N + S +F+ T  IW       +C+ 
Sbjct: 40  IRIWGTEGDSWICKSVLSEGHQRTVRKVAWSPCGNYLASASFDATTCIWKKNQDDFECVT 99
Query: 137 VLPAHSDPVTAIDFNRDGTMIVTSSYDGLYRILDASTPNGKFILVGTLDNTLR-----LW 191
            L  H + V ++ +   G ++ T S D    + +    + ++  V  L++  +     +W
Sbjct: 100 TLEGHENEVKSVAWAPSGNLLATCSRDKSVWVWEVDEED-EYECVSVLNSHTQDVKHVVW 158
Query: 192 NYSTRKI--------LKTYSGYTNSKYCISSTFSVTNGKYIVSHRDPVISVASHPAKNII 243
           + S   +        +K Y    +   C ++         +  H   V S+A  P+   +
Sbjct: 159 HPSQELLASASYDDTVKLYREEEDDWVCCAT---------LEGHESTVWSLAFDPSGQRL 209
Query: 244 ASGALDNDRTMKIWTQ 259
           AS    +DRT++IW Q
Sbjct: 210 AS--CSDDRTVRIWRQ 223

>pdb|1GXR|A Chain A, Wd40 Region Of Human Groucho/tle1 Length = 337

Iteration: 1
 Score = 41.6 bits (96), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 28/128 (21%), Positives = 50/128 (39%), Gaps = 24/128 (18%)
Query: 77  SDLATIRLWDV--PTATSLKTLIGHTNYVFCINFNPQSNRIVSDTFNETIRIWDIKTGKC 134
            + +T+ +WD+  PT      L       + +  +P S    S   +  I +WD+     
Sbjct: 116 GEASTLSIWDLAAPTPRIKAELTSSAPACYALAISPDSKVCFSCCSDGNIAVWDLHNQTL 175
Query: 135 LKVLPAHSDPVTAIDFNRDGTMIVTSSYDGLYRILDASTPNGKFILVGTLDNTLRLWNYS 194
           ++    H+D  + ID + DGT + T                      G LDNT+R W+  
Sbjct: 176 VRQFQGHTDGASCIDISNDGTKLWT----------------------GGLDNTVRSWDLR 213
Query: 195 TRKILKTY 202
             + L+ +
Sbjct: 214 EGRQLQQH 221

>pdb|4AEZ|A Chain A, Crystal Structure Of Mitotic Checkpoint Complex Length = 401

Iteration: 1
 Score = 41.2 bits (95), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 32/144 (22%), Positives = 59/144 (40%), Gaps = 26/144 (18%)
Query: 82  IRLWDVPTATSLKTLIGHTNYVFCINFNPQSNRIVSDTFNETIRIWDIKTGK-CLKVLPA 140
           + ++DV + T L+T+ GH   V C+++N   + + S + +  I   D++     +  L  
Sbjct: 158 VDIYDVESQTKLRTMAGHQARVGCLSWN--RHVLSSGSRSGAIHHHDVRIANHQIGTLQG 215
Query: 141 HSDPVTAIDFNRDGTMIVTSSYDGLYRILDASTPNGKFILV------------------- 181
           HS  V  + +  DG  + +   D + +I DA +   KF                      
Sbjct: 216 HSSEVCGLAWRSDGLQLASGGNDNVVQIWDARSSIPKFTKTNHNAAVKAVAWCPWQSNLL 275
Query: 182 ----GTLDNTLRLWNYSTRKILKT 201
               GT+D  +  WN +T   + T
Sbjct: 276 ATGGGTMDKQIHFWNAATGARVNT 299

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	262
2ynn_A	304	Coatomer subunit beta'; protein transport, peptide	100.0
1got_B	340	GT-beta; complex (GTP-binding/transducer), G prote	100.0
3ow8_A	321	WD repeat-containing protein 61; structural genomi	100.0
1vyh_C	410	Platelet-activating factor acetylhydrolase IB alph	100.0
4ery_A	312	WD repeat-containing protein 5; WD40, WIN motif, b	100.0
2pbi_B	354	Guanine nucleotide-binding protein subunit beta 5;	100.0
3iz6_a	380	40S ribosomal protein RACK1 (RACK1); eukaryotic ri	100.0
3frx_A	319	Guanine nucleotide-binding protein subunit beta- l	100.0
1vyh_C	410	Platelet-activating factor acetylhydrolase IB alph	100.0
4g56_B	357	MGC81050 protein; protein arginine methyltransfera	100.0
3ow8_A	321	WD repeat-containing protein 61; structural genomi	100.0
4gqb_B	344	Methylosome protein 50; TIM barrel, beta-propeller	100.0
1got_B	340	GT-beta; complex (GTP-binding/transducer), G prote	100.0
2xzm_R	343	RACK1; ribosome, translation; 3.93A {Tetrahymena t	100.0
3fm0_A	345	Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD r	100.0
1nr0_A	611	Actin interacting protein 1; beta propeller, WD40	100.0
4aow_A	340	Guanine nucleotide-binding protein subunit beta-2;	100.0
2hes_X	330	YDR267CP; beta-propeller, WD40 repeat, biosyntheti	100.0
2pbi_B	354	Guanine nucleotide-binding protein subunit beta 5;	100.0
2pm7_B	297	Protein transport protein SEC13, protein transport	100.0
1nr0_A	611	Actin interacting protein 1; beta propeller, WD40	100.0
1erj_A	393	Transcriptional repressor TUP1; beta-propeller, tr	100.0
2ynn_A	304	Coatomer subunit beta'; protein transport, peptide	100.0
3fm0_A	345	Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD r	100.0
2ymu_A	577	WD-40 repeat protein; unknown function, two domain	100.0
3iz6_a	380	40S ribosomal protein RACK1 (RACK1); eukaryotic ri	100.0
2hes_X	330	YDR267CP; beta-propeller, WD40 repeat, biosyntheti	100.0
3bg1_A	316	Protein SEC13 homolog; NPC, transport, WD repeat,	100.0
4gga_A	420	P55CDC, cell division cycle protein 20 homolog; ce	100.0
1gxr_A	337	ESG1, transducin-like enhancer protein 1; transcri	100.0
3dm0_A	694	Maltose-binding periplasmic protein fused with RAC	100.0
3jrp_A	379	Fusion protein of protein transport protein SEC13	100.0
3f3f_A	351	Nucleoporin SEH1; structural protein, protein comp	100.0
4aez_A	401	CDC20, WD repeat-containing protein SLP1; cell cyc	100.0
1r5m_A	425	SIR4-interacting protein SIF2; transcription corep	100.0
3zwl_B	369	Eukaryotic translation initiation factor 3 subuni;	100.0
2j04_B	524	YDR362CP, TAU91; beta propeller, type 2 promoters,	100.0
4a11_B	408	DNA excision repair protein ERCC-8; DNA binding pr	100.0
2pm9_A	416	Protein WEB1, protein transport protein SEC31; bet	100.0
4e54_B	435	DNA damage-binding protein 2; beta barrel, double	100.0
2ymu_A	577	WD-40 repeat protein; unknown function, two domain	100.0
4ggc_A	318	P55CDC, cell division cycle protein 20 homolog; ce	100.0
3gre_A	437	Serine/threonine-protein kinase VPS15; seven-blade	100.0
4h5i_A	365	Guanine nucleotide-exchange factor SEC12; copii ve	100.0
3ei3_B	383	DNA damage-binding protein 2; UV-damage, DDB, nucl	100.0
1gxr_A	337	ESG1, transducin-like enhancer protein 1; transcri	100.0
3odt_A	313	Protein DOA1; ubiquitin, nuclear protein; HET: MSE	100.0
1erj_A	393	Transcriptional repressor TUP1; beta-propeller, tr	100.0
1sq9_A	397	Antiviral protein SKI8; WD repeat, beta-transducin	100.0
3mkq_A	814	Coatomer beta'-subunit; beta-propeller, alpha-sole	100.0
3dm0_A	694	Maltose-binding periplasmic protein fused with RAC	100.0
2pm9_A	416	Protein WEB1, protein transport protein SEC31; bet	100.0
3k26_A	366	Polycomb protein EED; WD40, structural genomics, N	100.0
3vl1_A	420	26S proteasome regulatory subunit RPN14; beta-prop	100.0
3vl1_A	420	26S proteasome regulatory subunit RPN14; beta-prop	100.0
1k8k_C	372	P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-	100.0
3i2n_A	357	WD repeat-containing protein 92; WD40 repeats, str	100.0
2aq5_A	402	Coronin-1A; WD40 repeat, 7-bladed beta-propeller,	100.0
2ovr_B	445	FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40	100.0
3ei3_B	383	DNA damage-binding protein 2; UV-damage, DDB, nucl	100.0
3gre_A	437	Serine/threonine-protein kinase VPS15; seven-blade	100.0
3v7d_B	464	Cell division control protein 4; WD 40 domain, pho	100.0
3dwl_C	377	Actin-related protein 2/3 complex subunit 1; prope	100.0
1p22_A	435	F-BOX/WD-repeat protein 1A; ubiquitination, degrad	100.0
1k8k_C	372	P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-	100.0
3zwl_B	369	Eukaryotic translation initiation factor 3 subuni;	100.0
4gq1_A	393	NUP37; propeller, transport protein; 2.40A {Schizo	100.0
3odt_A	313	Protein DOA1; ubiquitin, nuclear protein; HET: MSE	100.0
1r5m_A	425	SIR4-interacting protein SIF2; transcription corep	100.0
3dwl_C	377	Actin-related protein 2/3 complex subunit 1; prope	100.0
2xyi_A	430	Probable histone-binding protein CAF1; transcripti	100.0
3i2n_A	357	WD repeat-containing protein 92; WD40 repeats, str	100.0
4ery_A	312	WD repeat-containing protein 5; WD40, WIN motif, b	100.0
3v7d_B	464	Cell division control protein 4; WD 40 domain, pho	100.0
2j04_B	524	YDR362CP, TAU91; beta propeller, type 2 promoters,	100.0
3sfz_A	1249	APAF-1, apoptotic peptidase activating factor 1; a	100.0
2w18_A	356	PALB2, fancn, partner and localizer of BRCA2; fanc	100.0
3dw8_B	447	Serine/threonine-protein phosphatase 2A 55 kDa RE	100.0
3k26_A	366	Polycomb protein EED; WD40, structural genomics, N	100.0
3mmy_A	368	MRNA export factor; mRNA export, nuclear protein;	100.0
1yfq_A	342	Cell cycle arrest protein BUB3; WD repeat WD40 rep	100.0
3sfz_A	1249	APAF-1, apoptotic peptidase activating factor 1; a	100.0
3jro_A	753	Fusion protein of protein transport protein SEC13	100.0
4gqb_B	344	Methylosome protein 50; TIM barrel, beta-propeller	100.0
3dw8_B	447	Serine/threonine-protein phosphatase 2A 55 kDa RE	100.0
3lrv_A	343	PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiqu	100.0
3frx_A	319	Guanine nucleotide-binding protein subunit beta- l	100.0
2ovr_B	445	FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40	100.0
1sq9_A	397	Antiviral protein SKI8; WD repeat, beta-transducin	100.0
1pgu_A	615	Actin interacting protein 1; WD repeat, seven-blad	100.0
1pgu_A	615	Actin interacting protein 1; WD repeat, seven-blad	100.0
3mkq_A	814	Coatomer beta'-subunit; beta-propeller, alpha-sole	100.0
1p22_A	435	F-BOX/WD-repeat protein 1A; ubiquitination, degrad	100.0
3jro_A	753	Fusion protein of protein transport protein SEC13	100.0
2aq5_A	402	Coronin-1A; WD40 repeat, 7-bladed beta-propeller,	100.0
3vu4_A	355	KMHSV2; beta-propeller fold, protein transport; 2.	100.0
2pm7_B	297	Protein transport protein SEC13, protein transport	100.0
2oaj_A	902	Protein SNI1; WD40 repeat, beta propeller, endocyt	100.0
4g56_B	357	MGC81050 protein; protein arginine methyltransfera	100.0
2xzm_R	343	RACK1; ribosome, translation; 3.93A {Tetrahymena t	100.0
3mmy_A	368	MRNA export factor; mRNA export, nuclear protein;	99.97
1yfq_A	342	Cell cycle arrest protein BUB3; WD repeat WD40 rep	99.97
4aez_A	401	CDC20, WD repeat-containing protein SLP1; cell cyc	99.97
2vdu_B	450	TRNA (guanine-N(7)-)-methyltransferase- associated	99.97
3bg1_A	316	Protein SEC13 homolog; NPC, transport, WD repeat,	99.97
4e54_B	435	DNA damage-binding protein 2; beta barrel, double	99.97
3jrp_A	379	Fusion protein of protein transport protein SEC13	99.97
2j04_A	588	TAU60, YPL007P, hypothetical protein YPL007C; beta	99.97
2j04_A	588	TAU60, YPL007P, hypothetical protein YPL007C; beta	99.97
1l0q_A	391	Surface layer protein; SLP, S-layer, 7-bladed beta	99.97
3lrv_A	343	PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiqu	99.97
4gq1_A	393	NUP37; propeller, transport protein; 2.40A {Schizo	99.97
3bws_A	433	Protein LP49; two-domain, immunoglobulin-like, 7-b	99.97
2oaj_A	902	Protein SNI1; WD40 repeat, beta propeller, endocyt	99.97
2vdu_B	450	TRNA (guanine-N(7)-)-methyltransferase- associated	99.96
3bws_A	433	Protein LP49; two-domain, immunoglobulin-like, 7-b	99.96
4aow_A	340	Guanine nucleotide-binding protein subunit beta-2;	99.96
4gga_A	420	P55CDC, cell division cycle protein 20 homolog; ce	99.96
2xyi_A	430	Probable histone-binding protein CAF1; transcripti	99.96
4ggc_A	318	P55CDC, cell division cycle protein 20 homolog; ce	99.95
3f3f_A	351	Nucleoporin SEH1; structural protein, protein comp	99.95
4h5i_A	365	Guanine nucleotide-exchange factor SEC12; copii ve	99.95
4a11_B	408	DNA excision repair protein ERCC-8; DNA binding pr	99.94
3vu4_A	355	KMHSV2; beta-propeller fold, protein transport; 2.	99.94
2hqs_A	415	Protein TOLB; TOLB, PAL, TOL, transport protein-li	99.94
1l0q_A	391	Surface layer protein; SLP, S-layer, 7-bladed beta	99.93
2w18_A	356	PALB2, fancn, partner and localizer of BRCA2; fanc	99.93
2oit_A	434	Nucleoporin 214KDA; NH2 terminal domain of NUP214/	99.91
1nir_A	543	Nitrite reductase; hemoprotein, denitrification, d	99.91
1ri6_A	343	Putative isomerase YBHE; 7-bladed propeller, enzym	99.91
2hqs_A	415	Protein TOLB; TOLB, PAL, TOL, transport protein-li	99.9
2ojh_A	297	Uncharacterized protein ATU1656/AGR_C_3050; TOLB,	99.9
3u4y_A	331	Uncharacterized protein; structural genomics, PSI-	99.89
1nir_A	543	Nitrite reductase; hemoprotein, denitrification, d	99.88
2ecf_A	741	Dipeptidyl peptidase IV; prolyl oligopeptidase fam	99.88
1xfd_A	723	DIP, dipeptidyl aminopeptidase-like protein 6, dip	99.88
1pby_B	337	Quinohemoprotein amine dehydrogenase 40 kDa subuni	99.88
3vgz_A	353	Uncharacterized protein YNCE; beta-propeller, prot	99.87
2oit_A	434	Nucleoporin 214KDA; NH2 terminal domain of NUP214/	99.87
3vgz_A	353	Uncharacterized protein YNCE; beta-propeller, prot	99.87
3scy_A	361	Hypothetical bacterial 6-phosphogluconolactonase;	99.87
3hfq_A	347	Uncharacterized protein LP_2219; Q88V64_lacpl, NES	99.86
2ecf_A	741	Dipeptidyl peptidase IV; prolyl oligopeptidase fam	99.85
3u4y_A	331	Uncharacterized protein; structural genomics, PSI-	99.85
2z3z_A	706	Dipeptidyl aminopeptidase IV; peptidase family S9,	99.85
1jmx_B	349	Amine dehydrogenase; oxidoreductase; HET: TRQ HEC;	99.84
2ojh_A	297	Uncharacterized protein ATU1656/AGR_C_3050; TOLB,	99.84
2z3z_A	706	Dipeptidyl aminopeptidase IV; peptidase family S9,	99.84
3o4h_A	582	Acylamino-acid-releasing enzyme; alpha/beta hydrol	99.84
1k32_A	1045	Tricorn protease; protein degradation, substrate g	99.84
1xfd_A	723	DIP, dipeptidyl aminopeptidase-like protein 6, dip	99.83
1k32_A	1045	Tricorn protease; protein degradation, substrate g	99.82
3hfq_A	347	Uncharacterized protein LP_2219; Q88V64_lacpl, NES	99.82
1q7f_A	286	NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL	99.8
1ri6_A	343	Putative isomerase YBHE; 7-bladed propeller, enzym	99.79
3o4h_A	582	Acylamino-acid-releasing enzyme; alpha/beta hydrol	99.79
3fvz_A	329	Peptidyl-glycine alpha-amidating monooxygenase; be	99.78
1jof_A	365	Carboxy-CIS,CIS-muconate cyclase; beta-propeller,	99.78
1z68_A	719	Fibroblast activation protein, alpha subunit; sepr	99.78
1pby_B	337	Quinohemoprotein amine dehydrogenase 40 kDa subuni	99.77
3pe7_A	388	Oligogalacturonate lyase; seven-bladed beta-propel	99.76
1jmx_B	349	Amine dehydrogenase; oxidoreductase; HET: TRQ HEC;	99.74
3pe7_A	388	Oligogalacturonate lyase; seven-bladed beta-propel	99.74
1z68_A	719	Fibroblast activation protein, alpha subunit; sepr	99.73
3azo_A	662	Aminopeptidase; POP family, hydrolase; 2.00A {Stre	99.72
4a5s_A	740	Dipeptidyl peptidase 4 soluble form; hydrolase, ty	99.72
2oiz_A	361	Aromatic amine dehydrogenase, large subunit; oxido	99.71
2dg1_A	333	DRP35, lactonase; beta propeller, hydrolase; 1.72A	99.7
3azo_A	662	Aminopeptidase; POP family, hydrolase; 2.00A {Stre	99.68
3c5m_A	396	Oligogalacturonate lyase; blade-shaped beta-propel	99.68
3scy_A	361	Hypothetical bacterial 6-phosphogluconolactonase;	99.67
3no2_A	276	Uncharacterized protein; six-bladed beta-propeller	99.66
1rwi_B	270	Serine/threonine-protein kinase PKND; beta propell	99.66
2gop_A	347	Trilobed protease; beta propeller, open velcro, hy	99.65
4a5s_A	740	Dipeptidyl peptidase 4 soluble form; hydrolase, ty	99.65
3no2_A	276	Uncharacterized protein; six-bladed beta-propeller	99.64
2bkl_A	695	Prolyl endopeptidase; mechanistic study, celiac sp	99.63
3c5m_A	396	Oligogalacturonate lyase; blade-shaped beta-propel	99.61
3e5z_A	296	Putative gluconolactonase; X-RAY NESG Q9RXN3 gluco	99.6
2dg1_A	333	DRP35, lactonase; beta propeller, hydrolase; 1.72A	99.6
3e5z_A	296	Putative gluconolactonase; X-RAY NESG Q9RXN3 gluco	99.6
2xdw_A	710	Prolyl endopeptidase; alpha/beta-hydrolase, amnesi	99.58
1rwi_B	270	Serine/threonine-protein kinase PKND; beta propell	99.57
1jof_A	365	Carboxy-CIS,CIS-muconate cyclase; beta-propeller,	99.55
1xip_A	388	Nucleoporin NUP159; beta-propeller, transport prot	99.54
3dsm_A	328	Uncharacterized protein bacuni_02894; seven_blated	99.52
1qks_A	567	Cytochrome CD1 nitrite reductase; enzyme, oxidored	99.51
3dsm_A	328	Uncharacterized protein bacuni_02894; seven_blated	99.5
2xdw_A	710	Prolyl endopeptidase; alpha/beta-hydrolase, amnesi	99.5
2z2n_A	299	Virginiamycin B lyase; seven-bladed beta-propeller	99.5
1pjx_A	314	Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotries	99.48
1q7f_A	286	NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL	99.46
3fvz_A	329	Peptidyl-glycine alpha-amidating monooxygenase; be	99.45
2gop_A	347	Trilobed protease; beta propeller, open velcro, hy	99.45
1xip_A	388	Nucleoporin NUP159; beta-propeller, transport prot	99.44
2z2n_A	299	Virginiamycin B lyase; seven-bladed beta-propeller	99.44
2mad_H	373	Methylamine dehydrogenase (heavy subunit); oxidore	99.43
3g4e_A	297	Regucalcin; six bladed beta-propeller, gluconolcat	99.43
3hrp_A	409	Uncharacterized protein; NP_812590.1, structural g	99.42
1yr2_A	741	Prolyl oligopeptidase; prolyl endopeptidase, mecha	99.42
2bkl_A	695	Prolyl endopeptidase; mechanistic study, celiac sp	99.41
1qks_A	567	Cytochrome CD1 nitrite reductase; enzyme, oxidored	99.4
2qc5_A	300	Streptogramin B lactonase; beta propeller, lyase;	99.39
3dr2_A	305	Exported gluconolactonase; gluconolactonase SMP-30	99.39
3sjl_D	386	Methylamine dehydrogenase heavy chain; MAUG, C-hem	99.38
2oiz_A	361	Aromatic amine dehydrogenase, large subunit; oxido	99.32
3c75_H	426	MADH, methylamine dehydrogenase heavy chain; coppe	99.32
3iuj_A	693	Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas	99.3
2hz6_A	369	Endoplasmic reticulum to nucleus signalling 1 isof	99.28
2qc5_A	300	Streptogramin B lactonase; beta propeller, lyase;	99.26
3g4e_A	297	Regucalcin; six bladed beta-propeller, gluconolcat	99.25
2qe8_A	343	Uncharacterized protein; structural genomics, join	99.24
2ghs_A	326	AGR_C_1268P; regucalcin, structural genomics, join	99.23
1yr2_A	741	Prolyl oligopeptidase; prolyl endopeptidase, mecha	99.21
2iwa_A	266	Glutamine cyclotransferase; pyroglutamate, acyltra	99.2
2hz6_A	369	Endoplasmic reticulum to nucleus signalling 1 isof	99.17
3sjl_D	386	Methylamine dehydrogenase heavy chain; MAUG, C-hem	99.17
1mda_H	368	Methylamine dehydrogenase (heavy subunit); electro	99.14
2ghs_A	326	AGR_C_1268P; regucalcin, structural genomics, join	99.14
3nol_A	262	Glutamine cyclotransferase; beta-propeller, glutam	99.1
3nok_A	268	Glutaminyl cyclase; beta-propeller, cyclotransfera	99.05
3hxj_A	330	Pyrrolo-quinoline quinone; all beta protein. incom	99.02
3dr2_A	305	Exported gluconolactonase; gluconolactonase SMP-30	99.01
2mad_H	373	Methylamine dehydrogenase (heavy subunit); oxidore	99.0
3mbr_X	243	Glutamine cyclotransferase; beta-propeller; 1.44A	98.99
2qe8_A	343	Uncharacterized protein; structural genomics, join	98.99
1pjx_A	314	Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotries	98.96
3iuj_A	693	Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas	98.94
3c75_H	426	MADH, methylamine dehydrogenase heavy chain; coppe	98.92
3q7m_A	376	Lipoprotein YFGL, BAMB; beta-propeller, BAM comple	98.92
3hrp_A	409	Uncharacterized protein; NP_812590.1, structural g	98.91
2ece_A	462	462AA long hypothetical selenium-binding protein;	98.86
3q7m_A	376	Lipoprotein YFGL, BAMB; beta-propeller, BAM comple	98.84
1kb0_A	677	Quinohemoprotein alcohol dehydrogenase; beta-prope	98.84
1yiq_A	689	Quinohemoprotein alcohol dehydrogenase; electron t	98.83
2ece_A	462	462AA long hypothetical selenium-binding protein;	98.83
1fwx_A	595	Nitrous oxide reductase; beta-propeller domain, cu	98.82
3hxj_A	330	Pyrrolo-quinoline quinone; all beta protein. incom	98.81
1kb0_A	677	Quinohemoprotein alcohol dehydrogenase; beta-prope	98.81
1yiq_A	689	Quinohemoprotein alcohol dehydrogenase; electron t	98.8
1fwx_A	595	Nitrous oxide reductase; beta-propeller domain, cu	98.73
1mda_H	368	Methylamine dehydrogenase (heavy subunit); electro	98.68
3qqz_A	255	Putative uncharacterized protein YJIK; MCSG, PSI-2	98.65
1npe_A	267	Nidogen, entactin; glycoprotein, basement membrane	98.56
1npe_A	267	Nidogen, entactin; glycoprotein, basement membrane	98.52
2iwa_A	266	Glutamine cyclotransferase; pyroglutamate, acyltra	98.49
2fp8_A	322	Strictosidine synthase; six bladed beta propeller	98.48
3nok_A	268	Glutaminyl cyclase; beta-propeller, cyclotransfera	98.47
3nol_A	262	Glutamine cyclotransferase; beta-propeller, glutam	98.46
1kv9_A	668	Type II quinohemoprotein alcohol dehydrogenase; el	98.44
2fp8_A	322	Strictosidine synthase; six bladed beta propeller	98.43
3tc9_A	430	Hypothetical hydrolase; 6-bladed beta-propeller, i	98.4
2xe4_A	751	Oligopeptidase B; hydrolase-inhibitor complex, hyd	98.38
2p4o_A	306	Hypothetical protein; putative lactonase, structur	98.35
3mbr_X	243	Glutamine cyclotransferase; beta-propeller; 1.44A	98.34
4hw6_A	433	Hypothetical protein, IPT/TIG domain protein; puta	98.33
1kv9_A	668	Type II quinohemoprotein alcohol dehydrogenase; el	98.32
2p4o_A	306	Hypothetical protein; putative lactonase, structur	98.31
2ad6_A	571	Methanol dehydrogenase subunit 1; PQQ configuratio	98.24
3v65_B	386	Low-density lipoprotein receptor-related protein;	98.19
3tc9_A	430	Hypothetical hydrolase; 6-bladed beta-propeller, i	98.18
1flg_A	582	Protein (quinoprotein ethanol dehydrogenase); supe	98.15
1w6s_A	599	Methanol dehydrogenase subunit 1; anisotropic, ele	98.15
3v64_C	349	Agrin; beta propeller, laminin-G, signaling, prote	98.14
1k3i_A	656	Galactose oxidase precursor; blade beta propeller,	98.12
3v64_C	349	Agrin; beta propeller, laminin-G, signaling, prote	98.11
3v65_B	386	Low-density lipoprotein receptor-related protein;	98.09
2xe4_A	751	Oligopeptidase B; hydrolase-inhibitor complex, hyd	98.03
4a2l_A	795	BT_4663, two-component system sensor histidine kin	97.99
4a2l_A	795	BT_4663, two-component system sensor histidine kin	97.99
2ad6_A	571	Methanol dehydrogenase subunit 1; PQQ configuratio	97.98
2p9w_A	334	MAL S 1 allergenic protein; beta propeller; 1.35A	97.97
1ijq_A	316	LDL receptor, low-density lipoprotein receptor; be	97.95
1w6s_A	599	Methanol dehydrogenase subunit 1; anisotropic, ele	97.95
4hw6_A	433	Hypothetical protein, IPT/TIG domain protein; puta	97.87
3amr_A	355	3-phytase; beta-propeller, phytate, MYO-inositol h	97.84
3m0c_C	791	LDL receptor, low-density lipoprotein receptor; pr	97.82
1ijq_A	316	LDL receptor, low-density lipoprotein receptor; be	97.82
3qqz_A	255	Putative uncharacterized protein YJIK; MCSG, PSI-2	97.81
3v9f_A	781	Two-component system sensor histidine kinase/RESP	97.81
3pbp_A	452	Nucleoporin NUP82; beta-propeller, mRNA export, mR	97.81
1k3i_A	656	Galactose oxidase precursor; blade beta propeller,	97.77
3p5b_L	400	Low density lipoprotein receptor variant; B-propel	97.76
3sov_A	318	LRP-6, low-density lipoprotein receptor-related pr	97.76
1n7d_A	699	LDL receptor, low-density lipoprotein receptor; fa	97.75
3p5b_L	400	Low density lipoprotein receptor variant; B-propel	97.73
1flg_A	582	Protein (quinoprotein ethanol dehydrogenase); supe	97.71
2xzh_A	365	Clathrin heavy chain 1; endocytosis, endocytosis i	97.66
3sov_A	318	LRP-6, low-density lipoprotein receptor-related pr	97.63
3kya_A	496	Putative phosphatase; structural genomics, joint c	97.61
3kya_A	496	Putative phosphatase; structural genomics, joint c	97.6
3v9f_A	781	Two-component system sensor histidine kinase/RESP	97.57
3amr_A	355	3-phytase; beta-propeller, phytate, MYO-inositol h	97.4
1bpo_A	494	Protein (clathrin); clathrin endocytosis beta-prop	97.38
2p9w_A	334	MAL S 1 allergenic protein; beta propeller; 1.35A	97.23
1n7d_A	699	LDL receptor, low-density lipoprotein receptor; fa	97.19
3pbp_A	452	Nucleoporin NUP82; beta-propeller, mRNA export, mR	97.17
2vpj_A	301	Kelch-like protein 12; adaptor protein, WNT signal	97.14
3s94_A	619	LRP-6, low-density lipoprotein receptor-related pr	97.04
2xn4_A	302	Kelch-like protein 2; structural protein, cytoskel	96.98
2xbg_A	327	YCF48-like protein; photosynthesis, photosystem II	96.92
3sre_A	355	PON1, serum paraoxonase; directed evolution, 6-bla	96.91
3ii7_A	306	Kelch-like protein 7; protein-binding, kelch-repea	96.89
2vpj_A	301	Kelch-like protein 12; adaptor protein, WNT signal	96.81
3s94_A	619	LRP-6, low-density lipoprotein receptor-related pr	96.75
3ii7_A	306	Kelch-like protein 7; protein-binding, kelch-repea	96.64
1tl2_A	236	L10, protein (tachylectin-2); animal lectin, horse	96.62
3sre_A	355	PON1, serum paraoxonase; directed evolution, 6-bla	96.6
1xi4_A	1630	Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle	96.53
4asc_A	315	Kelch repeat and BTB domain-containing protein 5;	96.52
1zgk_A	308	Kelch-like ECH-associated protein 1; beta-propelle	96.44
2xn4_A	302	Kelch-like protein 2; structural protein, cytoskel	96.43
4a0p_A	628	LRP6, LRP-6, low-density lipoprotein receptor-rela	96.43
4a0p_A	628	LRP6, LRP-6, low-density lipoprotein receptor-rela	96.38
2be1_A	339	Serine/threonine-protein kinase/endoribonuclease;	96.33
1tl2_A	236	L10, protein (tachylectin-2); animal lectin, horse	96.21
2be1_A	339	Serine/threonine-protein kinase/endoribonuclease;	96.16
1zgk_A	308	Kelch-like ECH-associated protein 1; beta-propelle	96.13
2xbg_A	327	YCF48-like protein; photosynthesis, photosystem II	95.79
2woz_A	318	Kelch repeat and BTB domain-containing protein 10;	95.77
1cru_A	454	Protein (soluble quinoprotein glucose dehydrogena;	95.59
2g8s_A	353	Glucose/sorbosone dehydrogenases; bladed beta-prop	95.56
3a9g_A	354	Putative uncharacterized protein; PQQ dependent de	95.47
2uvk_A	357	YJHT; unknown function, hypothetical protein, sial	95.31
4asc_A	315	Kelch repeat and BTB domain-containing protein 5;	95.12
3m0c_C	791	LDL receptor, low-density lipoprotein receptor; pr	95.03
2ism_A	352	Putative oxidoreductase; BL41XU spring-8, bladed b	94.73
3ei3_A	1158	DNA damage-binding protein 1; UV-damage, DDB, nucl	94.72
3sbq_A	638	Nitrous-oxide reductase; beta-propeller, cupredoxi	94.61
2ism_A	352	Putative oxidoreductase; BL41XU spring-8, bladed b	94.46
3das_A	347	Putative oxidoreductase; aldose sugar dehydrogenas	94.32
1cru_A	454	Protein (soluble quinoprotein glucose dehydrogena;	94.06
2woz_A	318	Kelch repeat and BTB domain-containing protein 10;	93.78
2xzh_A	365	Clathrin heavy chain 1; endocytosis, endocytosis i	93.62
3a9g_A	354	Putative uncharacterized protein; PQQ dependent de	93.49
2g8s_A	353	Glucose/sorbosone dehydrogenases; bladed beta-prop	92.81
2uvk_A	357	YJHT; unknown function, hypothetical protein, sial	92.17
3no0_A	276	DNA gyrase subunit A; DNA topology, topoisomerase,	91.9
3sbq_A	638	Nitrous-oxide reductase; beta-propeller, cupredoxi	91.62
2wg3_C	463	Hedgehog-interacting protein; lipoprotein, develop	91.36
4gq2_M	950	Nucleoporin NUP120; beta propeller alpha helical,	91.28
3das_A	347	Putative oxidoreductase; aldose sugar dehydrogenas	91.21
2zwa_A	695	Leucine carboxyl methyltransferase 2; HET: SAH CIT	91.05
3ei3_A	1158	DNA damage-binding protein 1; UV-damage, DDB, nucl	90.89
1bpo_A	494	Protein (clathrin); clathrin endocytosis beta-prop	90.57
4gq2_M	950	Nucleoporin NUP120; beta propeller alpha helical,	90.49
2zwa_A	695	Leucine carboxyl methyltransferase 2; HET: SAH CIT	89.97
1xi4_A	1630	Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle	86.24
2wg3_C	463	Hedgehog-interacting protein; lipoprotein, develop	85.5
3zwu_A	592	Alkaline phosphatase PHOX; hydrolase, beta-propell	85.2
4fhn_B	1139	Nucleoporin NUP120; protein complex,structural pro	82.02
3s25_A	302	Hypothetical 7-bladed beta-propeller-like protein;	80.78

>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A

Probab=100.00  E-value=4.5e-44  Score=276.16  Aligned_cols=217  Identities=19%  Similarity=0.390  Sum_probs=190.4

Q ss_pred             cccceecccCcCceEEEEEccCCCeEEEecCCCeEEEeecCCCCCCCCCCCCCCccccCCccccc---------------
Q 042146           13 YTLTQTLNGHLRAVSYVKFSHDGRLLTSSSAEKTLLTYSLSSISNFDSTPPSPLQKFTGHEQGIS---------------   77 (262)
Q Consensus        13 ~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~---------------   77 (262)
                      +++.+++++|.++|++++|+|++++|++++.||+|++||+++...        ...+..+...+.               
T Consensus         3 l~~~~~~~~h~~~V~~~~fsp~~~~l~s~~~dg~v~lWd~~~~~~--------~~~~~~~~~~v~~~~~~~~~~~l~s~s   74 (304)
T 2ynn_A            3 LDIKKTFSNRSDRVKGIDFHPTEPWVLTTLYSGRVELWNYETQVE--------VRSIQVTETPVRAGKFIARKNWIIVGS   74 (304)
T ss_dssp             CCCEEEEEEECSCEEEEEECSSSSEEEEEETTSEEEEEETTTTEE--------EEEEECCSSCEEEEEEEGGGTEEEEEE
T ss_pred             ceeEEeecCCCCceEEEEECCCCCEEEEEcCCCcEEEEECCCCce--------eEEeeccCCcEEEEEEeCCCCEEEEEC
Confidence            456788999999999999999999999999999999999875422        122222222222               


Q ss_pred             cceeEEEEecCCCccceecccCCcceEEEEEeCCCCEEEeecCCCeEEEEECCCC-eeeeeeecCCCCeeeEEEcc-CCC
Q 042146           78 DLATIRLWDVPTATSLKTLIGHTNYVFCINFNPQSNRIVSDTFNETIRIWDIKTG-KCLKVLPAHSDPVTAIDFNR-DGT  155 (262)
Q Consensus        78 ~~~~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~-~~~~~~~~~~~~v~~~~~~~-~~~  155 (262)
                      ..+.|++||+.+++.+..+.+|...|.+++|+|++++|++|+.|++|++||++++ .....+.+|...|.+++|+| ++.
T Consensus        75 ~d~~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~sgs~D~~v~lWd~~~~~~~~~~~~~h~~~v~~v~~~p~~~~  154 (304)
T 2ynn_A           75 DDFRIRVFNYNTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPS  154 (304)
T ss_dssp             TTSEEEEEETTTCCEEEEEECCSSCEEEEEECSSSSEEEEEETTSCEEEEEGGGTTEEEEEECCCCSCEEEEEECTTCTT
T ss_pred             CCCEEEEEECCCCcEEEEEeCCCCcEEEEEEcCCCCEEEEECCCCeEEEEECCCCcchhhhhcccCCcEEEEEECCCCCC
Confidence            2238999999999999999999999999999999999999999999999999887 55667889999999999999 678


Q ss_pred             EEEEEeCCCeEEEEeCCC-----------------------CCccEEEEEcCCCeEEEEecCCCceeeEEeccCCceeEE
Q 042146          156 MIVTSSYDGLYRILDAST-----------------------PNGKFILVGTLDNTLRLWNYSTRKILKTYSGYTNSKYCI  212 (262)
Q Consensus       156 ~l~~~~~dg~i~~~d~~~-----------------------~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~  212 (262)
                      .|++|+.|++|++||++.                       +++++|++|+.|+.|++||+++++++..+.+        
T Consensus       155 ~l~sgs~D~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~s~D~~i~iWd~~~~~~~~~~~~--------  226 (304)
T 2ynn_A          155 TFASGCLDRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATLEG--------  226 (304)
T ss_dssp             EEEEEETTSEEEEEETTCSSCSEEEECCCTTCEEEEEECCSTTCCEEEEEETTSEEEEEETTTTEEEEEEEC--------
T ss_pred             EEEEEeCCCeEEEEECCCCCccceeccCCcCcEEEEEEEEcCCCCEEEEEcCCCeEEEEeCCCCccceeeCC--------
Confidence            999999999999999864                       3678999999999999999999999999887        


Q ss_pred             EEEEecCCCeeEEccccceEEEEEcCCCCeEEEeeecCCCcEEEEeecc
Q 042146          213 SSTFSVTNGKYIVSHRDPVISVASHPAKNIIASGALDNDRTMKIWTQEK  261 (262)
Q Consensus       213 ~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~d~d~~i~iw~~~~  261 (262)
                                    |...|.+++|+|++++|++++  .||+|++||+..
T Consensus       227 --------------h~~~v~~~~~~p~~~~l~s~s--~Dg~i~iWd~~~  259 (304)
T 2ynn_A          227 --------------HMSNVSFAVFHPTLPIIISGS--EDGTLKIWNSST  259 (304)
T ss_dssp             --------------CSSCEEEEEECSSSSEEEEEE--TTSCEEEEETTT
T ss_pred             --------------CCCCEEEEEECCCCCEEEEEc--CCCeEEEEECCC
Confidence                          888999999999999999999  999999999864

>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*

Probab=100.00  E-value=1.8e-43  Score=276.94  Aligned_cols=229  Identities=22%  Similarity=0.402  Sum_probs=201.6

Q ss_pred             CCCCceeeec--ccccceecccCcCceEEEEEccCCCeEEEecCCCeEEEeecCCCCCCCCCCCCCCccccCCcccccc-
Q 042146            2 SSDRSLESFR--PYTLTQTLNGHLRAVSYVKFSHDGRLLTSSSAEKTLLTYSLSSISNFDSTPPSPLQKFTGHEQGISD-   78 (262)
Q Consensus         2 s~d~~i~~~~--~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~-   78 (262)
                      +.|+++..|+  ..+....+..|...|.+++|+|++++|++|+.|+.|++|++.....    .......+.+|...+.. 
T Consensus        74 s~Dg~v~iWd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d~~v~iw~~~~~~~----~~~~~~~~~~h~~~v~~~  149 (340)
T 1got_B           74 SQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSGNYVACGGLDNICSIYNLKTREG----NVRVSRELAGHTGYLSCC  149 (340)
T ss_dssp             ETTTEEEEEETTTCCEEEEEECSSSCEEEEEECTTSSEEEEEETTCEEEEEETTTCSB----SCEEEEEEECCSSCEEEE
T ss_pred             eCCCcEEEEECCCCCcceEeecCCccEEEEEECCCCCEEEEEeCCCeEEEEECccCCC----cceeEEEecCCCccEEEE
Confidence            4689999986  4567788899999999999999999999999999999999865321    11112233344433322 


Q ss_pred             -------------ceeEEEEecCCCccceecccCCcceEEEEEeCCCCEEEeecCCCeEEEEECCCCeeeeeeecCCCCe
Q 042146           79 -------------LATIRLWDVPTATSLKTLIGHTNYVFCINFNPQSNRIVSDTFNETIRIWDIKTGKCLKVLPAHSDPV  145 (262)
Q Consensus        79 -------------~~~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~v  145 (262)
                                   .+.|++||+++++.+..+.+|...|.+++|+|+++++++|+.|+.|++||+++++++..+.+|...|
T Consensus       150 ~~~~~~~l~s~s~d~~i~~wd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~sg~~d~~v~~wd~~~~~~~~~~~~h~~~v  229 (340)
T 1got_B          150 RFLDDNQIVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHESDI  229 (340)
T ss_dssp             EEEETTEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCSEEEEECCCSSCE
T ss_pred             EECCCCcEEEEECCCcEEEEECCCCcEEEEEcCCCCceEEEEECCCCCEEEEEeCCCcEEEEECCCCeeEEEEcCCcCCE
Confidence                         2389999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             eeEEEccCCCEEEEEeCCCeEEEEeCCC----------------------CCccEEEEEcCCCeEEEEecCCCceeeEEe
Q 042146          146 TAIDFNRDGTMIVTSSYDGLYRILDAST----------------------PNGKFILVGTLDNTLRLWNYSTRKILKTYS  203 (262)
Q Consensus       146 ~~~~~~~~~~~l~~~~~dg~i~~~d~~~----------------------~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~  203 (262)
                      .+++|+|++++|++++.||+|++||++.                      |++++|++|+.||.|++||+.+++.+..+.
T Consensus       230 ~~v~~~p~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~d~~i~vwd~~~~~~~~~~~  309 (340)
T 1got_B          230 NAICFFPNGNAFATGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDALKADRAGVLA  309 (340)
T ss_dssp             EEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCTTCCSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEE
T ss_pred             EEEEEcCCCCEEEEEcCCCcEEEEECCCCcEEEEEccCCcccceEEEEECCCCCEEEEECCCCeEEEEEcccCcEeeEee
Confidence            9999999999999999999999999875                      788999999999999999999999888887


Q ss_pred             ccCCceeEEEEEEecCCCeeEEccccceEEEEEcCCCCeEEEeeecCCCcEEEEe
Q 042146          204 GYTNSKYCISSTFSVTNGKYIVSHRDPVISVASHPAKNIIASGALDNDRTMKIWT  258 (262)
Q Consensus       204 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~d~d~~i~iw~  258 (262)
                      +                      |..+|.+++|+|++.+|++|+  .|+.|+||+
T Consensus       310 ~----------------------h~~~v~~~~~s~dg~~l~s~s--~D~~i~iWd  340 (340)
T 1got_B          310 G----------------------HDNRVSCLGVTDDGMAVATGS--WDSFLKIWN  340 (340)
T ss_dssp             C----------------------CSSCEEEEEECTTSSCEEEEE--TTSCEEEEC
T ss_pred             c----------------------CCCcEEEEEEcCCCCEEEEEc--CCccEEecC
Confidence            7                      889999999999999999999  899999996

>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}

Probab=100.00  E-value=1.1e-42  Score=270.17  Aligned_cols=235  Identities=24%  Similarity=0.427  Sum_probs=200.4

Q ss_pred             CCCCceeeecc----cccceecccCcCceEEEEEccCCCeEEEecCCCeEEEeecCCCCCCCCCC--CCCCc--cccCCc
Q 042146            2 SSDRSLESFRP----YTLTQTLNGHLRAVSYVKFSHDGRLLTSSSAEKTLLTYSLSSISNFDSTP--PSPLQ--KFTGHE   73 (262)
Q Consensus         2 s~d~~i~~~~~----~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~--~~~~~--~~~~~~   73 (262)
                      +.|++++.|+.    ......+.+|..+|.+++|+|++.++++++.|++|++||+..........  .....  .+....
T Consensus        55 s~D~~v~vW~~~~~~~~~~~~l~gh~~~v~~~~~~~~~~~l~s~s~D~~i~lWd~~~~~~~~~~~~~~~~~~~~~~spdg  134 (321)
T 3ow8_A           55 SLDDLVKVWKWRDERLDLQWSLEGHQLGVVSVDISHTLPIAASSSLDAHIRLWDLENGKQIKSIDAGPVDAWTLAFSPDS  134 (321)
T ss_dssp             ETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECSSSSEEEEEETTSEEEEEETTTTEEEEEEECCTTCCCCEEECTTS
T ss_pred             cCCCCEEEEECCCCCeeeeeeeccCCCCEEEEEECCCCCEEEEEeCCCcEEEEECCCCCEEEEEeCCCccEEEEEECCCC
Confidence            46899998863    23455789999999999999999999999999999999987643221111  11111  111111


Q ss_pred             ccc---ccceeEEEEecCCCccceecccCCcceEEEEEeCCCCEEEeecCCCeEEEEECCCCeeeeeeecCCCCeeeEEE
Q 042146           74 QGI---SDLATIRLWDVPTATSLKTLIGHTNYVFCINFNPQSNRIVSDTFNETIRIWDIKTGKCLKVLPAHSDPVTAIDF  150 (262)
Q Consensus        74 ~~v---~~~~~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~  150 (262)
                      ..+   ...+.|++|++++++....+..|...|.+++|+|++++|++|+.||.|++||+++++.+..+.+|..+|.+++|
T Consensus       135 ~~l~~g~~dg~v~i~~~~~~~~~~~~~~~~~~v~~~~~spdg~~lasg~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~  214 (321)
T 3ow8_A          135 QYLATGTHVGKVNIFGVESGKKEYSLDTRGKFILSIAYSPDGKYLASGAIDGIINIFDIATGKLLHTLEGHAMPIRSLTF  214 (321)
T ss_dssp             SEEEEECTTSEEEEEETTTCSEEEEEECSSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCCCEEEE
T ss_pred             CEEEEEcCCCcEEEEEcCCCceeEEecCCCceEEEEEECCCCCEEEEEcCCCeEEEEECCCCcEEEEEcccCCceeEEEE
Confidence            111   12348999999999998889899999999999999999999999999999999999999999999999999999


Q ss_pred             ccCCCEEEEEeCCCeEEEEeCCC--------------------CCccEEEEEcCCCeEEEEecCCCceeeEEeccCCcee
Q 042146          151 NRDGTMIVTSSYDGLYRILDAST--------------------PNGKFILVGTLDNTLRLWNYSTRKILKTYSGYTNSKY  210 (262)
Q Consensus       151 ~~~~~~l~~~~~dg~i~~~d~~~--------------------~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~  210 (262)
                      +|++++|++++.|+.|++||++.                    |++++|++++.|+.|++||+++++++..+.+      
T Consensus       215 spd~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~------  288 (321)
T 3ow8_A          215 SPDSQLLVTASDDGYIKIYDVQHANLAGTLSGHASWVLNVAFCPDDTHFVSSSSDKSVKVWDVGTRTCVHTFFD------  288 (321)
T ss_dssp             CTTSCEEEEECTTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECC------
T ss_pred             cCCCCEEEEEcCCCeEEEEECCCcceeEEEcCCCCceEEEEECCCCCEEEEEeCCCcEEEEeCCCCEEEEEEcC------
Confidence            99999999999999999999876                    7899999999999999999999999999887      


Q ss_pred             EEEEEEecCCCeeEEccccceEEEEEcCCCCeEEEeeecCCCcEEEEeec
Q 042146          211 CISSTFSVTNGKYIVSHRDPVISVASHPAKNIIASGALDNDRTMKIWTQE  260 (262)
Q Consensus       211 ~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~d~d~~i~iw~~~  260 (262)
                                      |...|.+++|+|++.+|++++  .||.|++||..
T Consensus       289 ----------------h~~~v~~v~~s~~g~~l~s~~--~d~~i~vwd~p  320 (321)
T 3ow8_A          289 ----------------HQDQVWGVKYNGNGSKIVSVG--DDQEIHIYDCP  320 (321)
T ss_dssp             ----------------CSSCEEEEEECTTSSEEEEEE--TTCCEEEEECC
T ss_pred             ----------------CCCcEEEEEECCCCCEEEEEe--CCCeEEEEeCC
Confidence                            888999999999999999999  89999999974

>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1

Probab=100.00  E-value=2.1e-42  Score=277.28  Aligned_cols=227  Identities=30%  Similarity=0.572  Sum_probs=200.3

Q ss_pred             CCCCceeeec--ccccceecccCcCceEEEEEccCCCeEEEecCCCeEEEeecCCCCCCCCCCCCCCccccCCccccc--
Q 042146            2 SSDRSLESFR--PYTLTQTLNGHLRAVSYVKFSHDGRLLTSSSAEKTLLTYSLSSISNFDSTPPSPLQKFTGHEQGIS--   77 (262)
Q Consensus         2 s~d~~i~~~~--~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~--   77 (262)
                      +.|++|+.|+  ..+....+++|.++|.+++|+|++++|++|+.|++|++||+......        ..+.+|...+.  
T Consensus       127 s~Dg~i~vwd~~~~~~~~~l~~h~~~V~~v~~~~~~~~l~sgs~D~~i~iwd~~~~~~~--------~~~~~h~~~V~~v  198 (410)
T 1vyh_C          127 SEDATIKVWDYETGDFERTLKGHTDSVQDISFDHSGKLLASCSADMTIKLWDFQGFECI--------RTMHGHDHNVSSV  198 (410)
T ss_dssp             ESSSCEEEEETTTCCCCEEECCCSSCEEEEEECTTSSEEEEEETTSCCCEEETTSSCEE--------ECCCCCSSCEEEE
T ss_pred             eCCCeEEEEECCCCcEEEEEeccCCcEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCcee--------EEEcCCCCCEEEE
Confidence            4688988886  56688899999999999999999999999999999999998764322        22222322222  


Q ss_pred             -------------cceeEEEEecCCCccceecccCCcceEEEEEeCCCCEEEeecCCCeEEEEECCCCeeeeeeecCCCC
Q 042146           78 -------------DLATIRLWDVPTATSLKTLIGHTNYVFCINFNPQSNRIVSDTFNETIRIWDIKTGKCLKVLPAHSDP  144 (262)
Q Consensus        78 -------------~~~~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~  144 (262)
                                   ..+.|++||+.++.++..+.+|...|.++.++|++.++++|+.|+.|++||++++++...+..|...
T Consensus       199 ~~~p~~~~l~s~s~D~~i~~wd~~~~~~~~~~~~h~~~v~~~~~~~~g~~l~s~s~D~~v~vwd~~~~~~~~~~~~h~~~  278 (410)
T 1vyh_C          199 SIMPNGDHIVSASRDKTIKMWEVQTGYCVKTFTGHREWVRMVRPNQDGTLIASCSNDQTVRVWVVATKECKAELREHRHV  278 (410)
T ss_dssp             EECSSSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEECCCSSC
T ss_pred             EEeCCCCEEEEEeCCCeEEEEECCCCcEEEEEeCCCccEEEEEECCCCCEEEEEcCCCeEEEEECCCCceeeEecCCCce
Confidence                         2238999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             eeeEEEccC--------------------CCEEEEEeCCCeEEEEeCCC--------------------CCccEEEEEcC
Q 042146          145 VTAIDFNRD--------------------GTMIVTSSYDGLYRILDAST--------------------PNGKFILVGTL  184 (262)
Q Consensus       145 v~~~~~~~~--------------------~~~l~~~~~dg~i~~~d~~~--------------------~~~~~l~~~~~  184 (262)
                      |.+++|+|+                    +.+|++|+.|+.|++||++.                    +++++|++|+.
T Consensus       279 v~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~sgs~D~~i~iwd~~~~~~~~~~~~h~~~v~~v~~~~~g~~l~s~s~  358 (410)
T 1vyh_C          279 VECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCLMTLVGHDNWVRGVLFHSGGKFILSCAD  358 (410)
T ss_dssp             EEEEEECCSCGGGGGGGCCSCC-------CCEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEECSSSSCEEEEET
T ss_pred             EEEEEEcCcccccchhhhccccccccCCCCCEEEEEeCCCeEEEEECCCCceEEEEECCCCcEEEEEEcCCCCEEEEEeC
Confidence            999999996                    66899999999999999886                    78999999999


Q ss_pred             CCeEEEEecCCCceeeEEeccCCceeEEEEEEecCCCeeEEccccceEEEEEcCCCCeEEEeeecCCCcEEEEeec
Q 042146          185 DNTLRLWNYSTRKILKTYSGYTNSKYCISSTFSVTNGKYIVSHRDPVISVASHPAKNIIASGALDNDRTMKIWTQE  260 (262)
Q Consensus       185 dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~d~d~~i~iw~~~  260 (262)
                      ||.|++||+++++++..+.+                      |...|++++|+|++.+|++|+  .||+|++|++.
T Consensus       359 D~~i~vwd~~~~~~~~~~~~----------------------h~~~v~~l~~~~~~~~l~sgs--~D~~i~vW~~r  410 (410)
T 1vyh_C          359 DKTLRVWDYKNKRCMKTLNA----------------------HEHFVTSLDFHKTAPYVVTGS--VDQTVKVWECR  410 (410)
T ss_dssp             TTEEEEECCTTSCCCEEEEC----------------------CSSCEEEEEECSSSSCEEEEE--TTSEEEEEC--
T ss_pred             CCeEEEEECCCCceEEEEcC----------------------CCCcEEEEEEcCCCCEEEEEe--CCCcEEEEeCC
Confidence            99999999999999988887                      888999999999999999999  89999999863

>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...

Probab=100.00  E-value=2.5e-41  Score=261.72  Aligned_cols=242  Identities=60%  Similarity=0.996  Sum_probs=204.3

Q ss_pred             cccccceecccCcCceEEEEEccCCCeEEEecCCCeEEEeecCCCCCCCCCCCCCCccccCCcccccc------------
Q 042146           11 RPYTLTQTLNGHLRAVSYVKFSHDGRLLTSSSAEKTLLTYSLSSISNFDSTPPSPLQKFTGHEQGISD------------   78 (262)
Q Consensus        11 ~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~------------   78 (262)
                      ..+.+..++.+|.++|++++|+|++++|++++.||.|++|++.....        ...+.+|...+..            
T Consensus        11 ~~~~~~~~~~gh~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~~--------~~~~~~h~~~v~~~~~~~~~~~l~s   82 (312)
T 4ery_A           11 PNYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKF--------EKTISGHKLGISDVAWSSDSNLLVS   82 (312)
T ss_dssp             CCCEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCE--------EEEECCCSSCEEEEEECTTSSEEEE
T ss_pred             CCceeEEEEcccCCcEEEEEECCCCCEEEEeeCCCeEEEEeCCCccc--------chhhccCCCceEEEEEcCCCCEEEE
Confidence            34667888999999999999999999999999999999998865322        1222233322222            


Q ss_pred             ---ceeEEEEecCCCccceecccCCcceEEEEEeCCCCEEEeecCCCeEEEEECCCCeeeeeeecCCCCeeeEEEccCCC
Q 042146           79 ---LATIRLWDVPTATSLKTLIGHTNYVFCINFNPQSNRIVSDTFNETIRIWDIKTGKCLKVLPAHSDPVTAIDFNRDGT  155 (262)
Q Consensus        79 ---~~~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~  155 (262)
                         .+.|++||+++++.+..+.+|...|.+++|+|+++++++|+.||.|++||+++++.+..+..|..+|.+++|+|+++
T Consensus        83 ~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~  162 (312)
T 4ery_A           83 ASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGS  162 (312)
T ss_dssp             EETTSEEEEEETTTCCEEEEEECCSSCEEEEEECSSSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSS
T ss_pred             ECCCCEEEEEECCCCcEEEEEcCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCEEEEEecCCCCcEEEEEEcCCCC
Confidence               23899999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEEEEeCCCeEEEEeCCC---------------------CCccEEEEEcCCCeEEEEecCCCceeeEEeccCCceeEEEE
Q 042146          156 MIVTSSYDGLYRILDAST---------------------PNGKFILVGTLDNTLRLWNYSTRKILKTYSGYTNSKYCISS  214 (262)
Q Consensus       156 ~l~~~~~dg~i~~~d~~~---------------------~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~  214 (262)
                      +|++++.||.|++||++.                     |++++|++++.||.|++||+++++++..+.++.....++..
T Consensus       163 ~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~  242 (312)
T 4ery_A          163 LIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFA  242 (312)
T ss_dssp             EEEEEETTSCEEEEETTTCCEEEEECCSSCCCEEEEEECTTSSEEEEEETTTEEEEEETTTTEEEEEECSSCCSSSCCCE
T ss_pred             EEEEEeCCCcEEEEECCCCceeeEEeccCCCceEEEEECCCCCEEEEEcCCCeEEEEECCCCcEEEEEEecCCceEEEEE
Confidence            999999999999999876                     78899999999999999999999999999887765554444


Q ss_pred             EEecCCCeeEE-----------------------ccccceEEEEEcCCCCeEEEeeecCCCcEEEEeec
Q 042146          215 TFSVTNGKYIV-----------------------SHRDPVISVASHPAKNIIASGALDNDRTMKIWTQE  260 (262)
Q Consensus       215 ~~~~~~~~~~~-----------------------~~~~~v~~~~~~p~~~~l~~~~~d~d~~i~iw~~~  260 (262)
                      .+...++.+++                       +|...|.+++|+|++++|++++.+.|+.|++|+.+
T Consensus       243 ~~~~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~~~~~d~~i~~W~~d  311 (312)
T 4ery_A          243 NFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKTIKLWKSD  311 (312)
T ss_dssp             EEECSSSCEEEECCTTSCEEEEETTTCCEEEEECCCSSCEEEEEECSSSSEEEEEECTTTCCEEEEECC
T ss_pred             EEEeCCCcEEEEECCCCEEEEEECCCchhhhhhhccCCcEEEEeecCcCCceEEEEccCCccEEEecCC
Confidence            44333333222                       28889999999999999999975469999999975

>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}

Probab=100.00  E-value=2.3e-41  Score=266.31  Aligned_cols=231  Identities=21%  Similarity=0.423  Sum_probs=199.6

Q ss_pred             CCCCceeeec--ccccceecccCcCceEEEEEccCCCeEEEecCCCeEEEeecCCCCCCCCCCCCCCccccCCcccccc-
Q 042146            2 SSDRSLESFR--PYTLTQTLNGHLRAVSYVKFSHDGRLLTSSSAEKTLLTYSLSSISNFDSTPPSPLQKFTGHEQGISD-   78 (262)
Q Consensus         2 s~d~~i~~~~--~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~-   78 (262)
                      +.|+++..|+  +.+..+.+..|...|.+++|+|++.+|++|+.|+.+++|++.......  .......+..|...+.. 
T Consensus        83 s~Dg~v~vWd~~~~~~~~~~~~~~~~v~~~~~sp~g~~lasg~~d~~i~v~~~~~~~~~~--~~~~~~~~~~h~~~v~~~  160 (354)
T 2pbi_B           83 SQDGKVIVWDSFTTNKEHAVTMPCTWVMACAYAPSGCAIACGGLDNKCSVYPLTFDKNEN--MAAKKKSVAMHTNYLSAC  160 (354)
T ss_dssp             ETTSEEEEEETTTCCEEEEEECSSSCCCEEEECTTSSEEEEESTTSEEEEEECCCCTTCC--SGGGCEEEEECSSCEEEE
T ss_pred             eCCCeEEEEECCCCCcceEEecCCCCEEEEEECCCCCEEEEeeCCCCEEEEEEecccccc--ccccceeeeccCCcEEEE
Confidence            4689999997  455677888899999999999999999999999999999986432111  11112223334333322 


Q ss_pred             --------------ceeEEEEecCCCccceecccCCcceEEEEEeC--CCCEEEeecCCCeEEEEECCCCeeeeeeecCC
Q 042146           79 --------------LATIRLWDVPTATSLKTLIGHTNYVFCINFNP--QSNRIVSDTFNETIRIWDIKTGKCLKVLPAHS  142 (262)
Q Consensus        79 --------------~~~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~--~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~  142 (262)
                                    .+.|++||+++++.+..+.+|...|.+++++|  ++++|++|+.||.|++||+++++++..+..|.
T Consensus       161 ~~~~~~~~l~t~s~D~~v~lwd~~~~~~~~~~~~h~~~v~~~~~~~~~~g~~l~sgs~Dg~v~~wd~~~~~~~~~~~~h~  240 (354)
T 2pbi_B          161 SFTNSDMQILTASGDGTCALWDVESGQLLQSFHGHGADVLCLDLAPSETGNTFVSGGCDKKAMVWDMRSGQCVQAFETHE  240 (354)
T ss_dssp             EECSSSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECCCSSCCEEEEEETTSCEEEEETTTCCEEEEECCCS
T ss_pred             EEeCCCCEEEEEeCCCcEEEEeCCCCeEEEEEcCCCCCeEEEEEEeCCCCCEEEEEeCCCeEEEEECCCCcEEEEecCCC
Confidence                          23899999999999999999999999999988  56899999999999999999999999999999


Q ss_pred             CCeeeEEEccCCCEEEEEeCCCeEEEEeCCC----------------------CCccEEEEEcCCCeEEEEecCCCceee
Q 042146          143 DPVTAIDFNRDGTMIVTSSYDGLYRILDAST----------------------PNGKFILVGTLDNTLRLWNYSTRKILK  200 (262)
Q Consensus       143 ~~v~~~~~~~~~~~l~~~~~dg~i~~~d~~~----------------------~~~~~l~~~~~dg~i~i~d~~~~~~~~  200 (262)
                      ..|.+++|+|++.+|++++.|++|++||++.                      +++++|++|+.|+.|++||+.+++.+.
T Consensus       241 ~~v~~v~~~p~~~~l~s~s~D~~v~lwd~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~g~~d~~i~vwd~~~~~~~~  320 (354)
T 2pbi_B          241 SDVNSVRYYPSGDAFASGSDDATCRLYDLRADREVAIYSKESIIFGASSVDFSLSGRLLFAGYNDYTINVWDVLKGSRVS  320 (354)
T ss_dssp             SCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCTTCCSCEEEEEECTTSSEEEEEETTSCEEEEETTTCSEEE
T ss_pred             CCeEEEEEeCCCCEEEEEeCCCeEEEEECCCCcEEEEEcCCCcccceeEEEEeCCCCEEEEEECCCcEEEEECCCCceEE
Confidence            9999999999999999999999999999875                      688999999999999999999999888


Q ss_pred             EEeccCCceeEEEEEEecCCCeeEEccccceEEEEEcCCCCeEEEeeecCCCcEEEEe
Q 042146          201 TYSGYTNSKYCISSTFSVTNGKYIVSHRDPVISVASHPAKNIIASGALDNDRTMKIWT  258 (262)
Q Consensus       201 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~d~d~~i~iw~  258 (262)
                      .+.+                      |...|++++|+|++++|++|+  .|++|++|+
T Consensus       321 ~l~~----------------------h~~~v~~l~~spdg~~l~sgs--~D~~v~vW~  354 (354)
T 2pbi_B          321 ILFG----------------------HENRVSTLRVSPDGTAFCSGS--WDHTLRVWA  354 (354)
T ss_dssp             EECC----------------------CSSCEEEEEECTTSSCEEEEE--TTSEEEEEC
T ss_pred             EEEC----------------------CCCcEEEEEECCCCCEEEEEc--CCCCEEecC
Confidence            8876                      889999999999999999999  899999996

>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}

Probab=100.00  E-value=1.4e-41  Score=270.03  Aligned_cols=239  Identities=23%  Similarity=0.415  Sum_probs=198.4

Q ss_pred             CCCCceeeec--ccccceecccCcCceEEEEEccCCCeEEEecCCCeEEEeecCCCCCCCCCCCCCCccccCCcccc---
Q 042146            2 SSDRSLESFR--PYTLTQTLNGHLRAVSYVKFSHDGRLLTSSSAEKTLLTYSLSSISNFDSTPPSPLQKFTGHEQGI---   76 (262)
Q Consensus         2 s~d~~i~~~~--~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v---   76 (262)
                      +.|++|+.|+  ..+....++.|...|.+++|+|++++|++|+.|+.+++|++....... ........+.+|...+   
T Consensus        85 s~D~~v~iWd~~~~~~~~~~~~h~~~v~~~~~s~~g~~las~~~d~~v~iw~~~~~~~~~-~~~~~~~~~~gh~~~v~~~  163 (380)
T 3iz6_a           85 SQDGRLIVWNALTSQKTHAIKLHCPWVMECAFAPNGQSVACGGLDSACSIFNLSSQADRD-GNMPVSRVLTGHKGYASSC  163 (380)
T ss_dssp             ETTSEEEEEETTTTEEEEEEECCCTTCCCCEECTTSSEEEECCSSSCCEEEECCCCSSCC-CSSTTCCBCCCCSSCCCCC
T ss_pred             eCCCeEEEEECCCCccceEEecCCCCEEEEEECCCCCEEEEeeCCCcEEEEECCCCcccc-CCccceeeccCCCcceEEE
Confidence            4689999997  456778899999999999999999999999999999999986532111 0111112233333222   


Q ss_pred             -------------ccceeEEEEecCCCccceec-----ccCCcceEEEEEeC-CCCEEEeecCCCeEEEEECC-CCeeee
Q 042146           77 -------------SDLATIRLWDVPTATSLKTL-----IGHTNYVFCINFNP-QSNRIVSDTFNETIRIWDIK-TGKCLK  136 (262)
Q Consensus        77 -------------~~~~~i~v~d~~~~~~~~~~-----~~~~~~v~~~~~~~-~~~~l~~~~~dg~i~vwd~~-~~~~~~  136 (262)
                                   ...+.|++||+.+++.+..+     .+|...|.+++++| +++++++|+.|+.|++||++ .++.+.
T Consensus       164 ~~~~~~~~~l~s~s~D~~i~~wd~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~sgs~D~~v~~wd~~~~~~~~~  243 (380)
T 3iz6_a          164 QYVPDQETRLITGSGDQTCVLWDVTTGQRISIFGSEFPSGHTADVLSLSINSLNANMFISGSCDTTVRLWDLRITSRAVR  243 (380)
T ss_dssp             BCCSSSSSCEEEECTTSCEEEECTTTCCEEEEECCCSSSSCCSCEEEEEECSSSCCEEEEEETTSCEEEEETTTTCCCCE
T ss_pred             EEecCCCCEEEEECCCCcEEEEEcCCCcEEEEeecccCCCCccCeEEEEeecCCCCEEEEEECCCeEEEEECCCCCcceE
Confidence                         12338999999999887765     67889999999987 88999999999999999998 457788


Q ss_pred             eeecCCCCeeeEEEccCCCEEEEEeCCCeEEEEeCCC---------------------------CCccEEEEEcCCCeEE
Q 042146          137 VLPAHSDPVTAIDFNRDGTMIVTSSYDGLYRILDAST---------------------------PNGKFILVGTLDNTLR  189 (262)
Q Consensus       137 ~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~d~~~---------------------------~~~~~l~~~~~dg~i~  189 (262)
                      .+.+|.+.|.+++|+|++++|++++.||+|++||++.                           |++++|++|+.||.|+
T Consensus       244 ~~~~h~~~v~~v~~~p~~~~l~s~s~D~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~  323 (380)
T 3iz6_a          244 TYHGHEGDINSVKFFPDGQRFGTGSDDGTCRLFDMRTGHQLQVYNREPDRNDNELPIVTSVAFSISGRLLFAGYSNGDCY  323 (380)
T ss_dssp             EECCCSSCCCEEEECTTSSEEEEECSSSCEEEEETTTTEEEEEECCCCSSSCCSSCSCSEEEECSSSSEEEEECTTSCEE
T ss_pred             EECCcCCCeEEEEEecCCCeEEEEcCCCeEEEEECCCCcEEEEecccccccccccCceEEEEECCCCCEEEEEECCCCEE
Confidence            8899999999999999999999999999999999875                           6789999999999999


Q ss_pred             EEecCCCceeeEEeccCCceeEEEEEEecCCCeeEEccccceEEEEEcCCCCeEEEeeecCCCcEEEEeecc
Q 042146          190 LWNYSTRKILKTYSGYTNSKYCISSTFSVTNGKYIVSHRDPVISVASHPAKNIIASGALDNDRTMKIWTQEK  261 (262)
Q Consensus       190 i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~d~d~~i~iw~~~~  261 (262)
                      +||+.+++.+..+.....                  +|.+.|.+++|+|++.+|++|+  .|++|++|++..
T Consensus       324 vwd~~~~~~~~~~~~~~~------------------~h~~~v~~l~~s~dg~~l~sgs--~D~~i~iW~~~~  375 (380)
T 3iz6_a          324 VWDTLLAEMVLNLGTLQN------------------SHEGRISCLGLSSDGSALCTGS--WDKNLKIWAFSG  375 (380)
T ss_dssp             EEETTTCCEEEEECCSCS------------------SCCCCCCEEEECSSSSEEEEEC--TTSCEEEEECCS
T ss_pred             EEECCCCceEEEEecccC------------------CCCCceEEEEECCCCCEEEEee--CCCCEEEEecCC
Confidence            999999888877743211                  1899999999999999999999  899999999864

>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R*

Probab=100.00  E-value=9.8e-41  Score=259.17  Aligned_cols=240  Identities=27%  Similarity=0.488  Sum_probs=195.5

Q ss_pred             cccceecccCcCceEEEEEccCC-CeEEEecCCCeEEEeecCCCCCCCCCCCCCCccccCCccccccc------------
Q 042146           13 YTLTQTLNGHLRAVSYVKFSHDG-RLLTSSSAEKTLLTYSLSSISNFDSTPPSPLQKFTGHEQGISDL------------   79 (262)
Q Consensus        13 ~~~~~~~~~h~~~v~~~~~~~~~-~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~------------   79 (262)
                      +.+..++++|.++|++++|+|++ ++|++|+.|++|++|++.....   ....+...+.+|...+..+            
T Consensus         7 ~~l~~~l~gH~~~V~~l~~~~~~~~~l~s~s~D~~v~~W~~~~~~~---~~~~~~~~~~~h~~~v~~~~~s~dg~~l~s~   83 (319)
T 3frx_A            7 LVLRGTLEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQ---KFGVPVRSFKGHSHIVQDCTLTADGAYALSA   83 (319)
T ss_dssp             EEEEEEECCCSSCEEEEEECSSCTTEEEEEETTSEEEEEEEEEETT---EEEEEEEEEECCSSCEEEEEECTTSSEEEEE
T ss_pred             EEEEEEEccccceEEEEEccCCCccEEEEecCCccEEEecCCCCCc---cccccceEEeCCcccEEEEEECCCCCEEEEE
Confidence            45667899999999999999965 8999999999999999854211   0112233444555444332            


Q ss_pred             ---eeEEEEecCCCccceecccCCcceEEEEEeCCCCEEEeecCCCeEEEEECCCCeeeeeeecCCCCeeeEEEccC---
Q 042146           80 ---ATIRLWDVPTATSLKTLIGHTNYVFCINFNPQSNRIVSDTFNETIRIWDIKTGKCLKVLPAHSDPVTAIDFNRD---  153 (262)
Q Consensus        80 ---~~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~---  153 (262)
                         +.|++||+.+++.+..+.+|...|.+++|+|+++++++|+.|++|++||++ ++++..+.+|...|.+++|+|.   
T Consensus        84 s~D~~v~~wd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~D~~i~vwd~~-~~~~~~~~~h~~~v~~~~~~~~~~~  162 (319)
T 3frx_A           84 SWDKTLRLWDVATGETYQRFVGHKSDVMSVDIDKKASMIISGSRDKTIKVWTIK-GQCLATLLGHNDWVSQVRVVPNEKA  162 (319)
T ss_dssp             ETTSEEEEEETTTTEEEEEEECCSSCEEEEEECTTSCEEEEEETTSCEEEEETT-SCEEEEECCCSSCEEEEEECCC---
T ss_pred             eCCCEEEEEECCCCCeeEEEccCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECC-CCeEEEEeccCCcEEEEEEccCCCC
Confidence               289999999999999999999999999999999999999999999999997 5567788899999999999984   


Q ss_pred             ---CCEEEEEeCCCeEEEEeCCC--------------------CCccEEEEEcCCCeEEEEecCCCceeeEEeccCCcee
Q 042146          154 ---GTMIVTSSYDGLYRILDAST--------------------PNGKFILVGTLDNTLRLWNYSTRKILKTYSGYTNSKY  210 (262)
Q Consensus       154 ---~~~l~~~~~dg~i~~~d~~~--------------------~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~  210 (262)
                         +..+++++.|+.|++||++.                    |++++|++|+.||.|++||+++++++..+..+. .+.
T Consensus       163 ~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~-~v~  241 (319)
T 3frx_A          163 DDDSVTIISAGNDKMVKAWNLNQFQIEADFIGHNSNINTLTASPDGTLIASAGKDGEIMLWNLAAKKAMYTLSAQD-EVF  241 (319)
T ss_dssp             ---CCEEEEEETTSCEEEEETTTTEEEEEECCCCSCEEEEEECTTSSEEEEEETTCEEEEEETTTTEEEEEEECCS-CEE
T ss_pred             CCCccEEEEEeCCCEEEEEECCcchhheeecCCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEecCCC-cEE
Confidence               44899999999999999875                    789999999999999999999999988887643 333


Q ss_pred             EEEEEEecCCCeeEEc-----------------------------cccceEEEEEcCCCCeEEEeeecCCCcEEEEeecc
Q 042146          211 CISSTFSVTNGKYIVS-----------------------------HRDPVISVASHPAKNIIASGALDNDRTMKIWTQEK  261 (262)
Q Consensus       211 ~~~~~~~~~~~~~~~~-----------------------------~~~~v~~~~~~p~~~~l~~~~~d~d~~i~iw~~~~  261 (262)
                        .+.|++....+..+                             |...+.+++|+|++++|++|+  .||.|++|++..
T Consensus       242 --~~~~sp~~~~la~~~~~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~sg~--~Dg~i~vWd~~t  317 (319)
T 3frx_A          242 --SLAFSPNRYWLAAATATGIKVFSLDPQYLVDDLRPEFAGYSKAAEPHAVSLAWSADGQTLFAGY--TDNVIRVWQVMT  317 (319)
T ss_dssp             --EEEECSSSSEEEEEETTEEEEEEETTEEEEEEECCCCTTCCGGGCCCEEEEEECTTSSEEEEEE--TTSCEEEEEEEE
T ss_pred             --EEEEcCCCCEEEEEcCCCcEEEEeCcCeeeeccCccccccccCcCcceeEEEECCCCCEEEEee--cCceEEEEEEee
Confidence              33444433322221                             456789999999999999999  999999999864

>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1

Probab=100.00  E-value=4.1e-41  Score=269.83  Aligned_cols=214  Identities=31%  Similarity=0.564  Sum_probs=191.3

Q ss_pred             ceecccCcCceEEEEEccCCCeEEEecCCCeEEEeecCCCCCCCCCCCCCCccccCCccccccc---------------e
Q 042146           16 TQTLNGHLRAVSYVKFSHDGRLLTSSSAEKTLLTYSLSSISNFDSTPPSPLQKFTGHEQGISDL---------------A   80 (262)
Q Consensus        16 ~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~---------------~   80 (262)
                      ...+.+|.++|++++|+|++++|++|+.||+|++||+++...        ...+.+|...+..+               +
T Consensus       101 ~~~l~gh~~~V~~~~~~p~~~~l~s~s~Dg~i~vwd~~~~~~--------~~~l~~h~~~V~~v~~~~~~~~l~sgs~D~  172 (410)
T 1vyh_C          101 KYALSGHRSPVTRVIFHPVFSVMVSASEDATIKVWDYETGDF--------ERTLKGHTDSVQDISFDHSGKLLASCSADM  172 (410)
T ss_dssp             SCEEECCSSCEEEEEECSSSSEEEEEESSSCEEEEETTTCCC--------CEEECCCSSCEEEEEECTTSSEEEEEETTS
T ss_pred             eEeecccCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcE--------EEEEeccCCcEEEEEEcCCCCEEEEEeCCC
Confidence            567789999999999999999999999999999999875432        23334444433322               2


Q ss_pred             eEEEEecCCCccceecccCCcceEEEEEeCCCCEEEeecCCCeEEEEECCCCeeeeeeecCCCCeeeEEEccCCCEEEEE
Q 042146           81 TIRLWDVPTATSLKTLIGHTNYVFCINFNPQSNRIVSDTFNETIRIWDIKTGKCLKVLPAHSDPVTAIDFNRDGTMIVTS  160 (262)
Q Consensus        81 ~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~  160 (262)
                      .|++||+.+++.+..+.+|...|.+++|+|+++++++|+.|++|++||+++++++..+.+|...|.++.++|++.+|++|
T Consensus       173 ~i~iwd~~~~~~~~~~~~h~~~V~~v~~~p~~~~l~s~s~D~~i~~wd~~~~~~~~~~~~h~~~v~~~~~~~~g~~l~s~  252 (410)
T 1vyh_C          173 TIKLWDFQGFECIRTMHGHDHNVSSVSIMPNGDHIVSASRDKTIKMWEVQTGYCVKTFTGHREWVRMVRPNQDGTLIASC  252 (410)
T ss_dssp             CCCEEETTSSCEEECCCCCSSCEEEEEECSSSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECTTSSEEEEE
T ss_pred             eEEEEeCCCCceeEEEcCCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCcEEEEEeCCCccEEEEEECCCCCEEEEE
Confidence            89999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             eCCCeEEEEeCCC--------------------CC--------------------ccEEEEEcCCCeEEEEecCCCceee
Q 042146          161 SYDGLYRILDAST--------------------PN--------------------GKFILVGTLDNTLRLWNYSTRKILK  200 (262)
Q Consensus       161 ~~dg~i~~~d~~~--------------------~~--------------------~~~l~~~~~dg~i~i~d~~~~~~~~  200 (262)
                      +.|++|++||++.                    |+                    +.+|++|+.|+.|++||+++++++.
T Consensus       253 s~D~~v~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~sgs~D~~i~iwd~~~~~~~~  332 (410)
T 1vyh_C          253 SNDQTVRVWVVATKECKAELREHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCLM  332 (410)
T ss_dssp             ETTSCEEEEETTTCCEEEEECCCSSCEEEEEECCSCGGGGGGGCCSCC-------CCEEEEEETTSEEEEEETTTTEEEE
T ss_pred             cCCCeEEEEECCCCceeeEecCCCceEEEEEEcCcccccchhhhccccccccCCCCCEEEEEeCCCeEEEEECCCCceEE
Confidence            9999999999875                    22                    6689999999999999999999998


Q ss_pred             EEeccCCceeEEEEEEecCCCeeEEccccceEEEEEcCCCCeEEEeeecCCCcEEEEeecc
Q 042146          201 TYSGYTNSKYCISSTFSVTNGKYIVSHRDPVISVASHPAKNIIASGALDNDRTMKIWTQEK  261 (262)
Q Consensus       201 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~d~d~~i~iw~~~~  261 (262)
                      .+.+                      |...|++++|+|++++|++++  .||.|++||+.+
T Consensus       333 ~~~~----------------------h~~~v~~v~~~~~g~~l~s~s--~D~~i~vwd~~~  369 (410)
T 1vyh_C          333 TLVG----------------------HDNWVRGVLFHSGGKFILSCA--DDKTLRVWDYKN  369 (410)
T ss_dssp             EEEC----------------------CSSCEEEEEECSSSSCEEEEE--TTTEEEEECCTT
T ss_pred             EEEC----------------------CCCcEEEEEEcCCCCEEEEEe--CCCeEEEEECCC
Confidence            8887                      888999999999999999999  899999999864

>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}

Probab=100.00  E-value=6.7e-41  Score=263.87  Aligned_cols=236  Identities=19%  Similarity=0.265  Sum_probs=182.3

Q ss_pred             ecccCcCceEEEEEccCCCeEEEecC------CCeEEEeecCCCCCCCCCCCCCCccccCCcccccc-------------
Q 042146           18 TLNGHLRAVSYVKFSHDGRLLTSSSA------EKTLLTYSLSSISNFDSTPPSPLQKFTGHEQGISD-------------   78 (262)
Q Consensus        18 ~~~~h~~~v~~~~~~~~~~~l~s~~~------d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~-------------   78 (262)
                      ....|+..|++++|+|||++||+|+.      |+.|++|+........    ........|...+..             
T Consensus        37 ~p~~H~~~V~~v~fSpDG~~las~s~d~~~~wd~~v~~~~~~~~~~~~----~~~~~~~~~~~~V~~~~~s~d~~~l~~s  112 (357)
T 4g56_B           37 APACMEVQIGAVRYRRDGALLLAASSLSSRTWGGSIWVFKDPEGAPNE----SLCTAGVQTEAGVTDVAWVSEKGILVAS  112 (357)
T ss_dssp             ---CCCSEEEEEEECSSSCEEEEEECSSSSSCCEEEEEESSCC---CG----GGCSEEEECSSCEEEEEEETTTEEEEEE
T ss_pred             CcccccCCEEEEEECCCCCEEEEEcCCCCccccCeEEEEECCCCCcce----eEecccCCCCCCEEEEEEcCCCCEEEEE
Confidence            34579999999999999999999997      7889999765432111    111111223322322             


Q ss_pred             -ceeEEEEecCCCccce----ecccCCcceEEEEEeCCCCEEEeecCCCeEEEEECCCCeeeeeeecCCCCeeeEEEccC
Q 042146           79 -LATIRLWDVPTATSLK----TLIGHTNYVFCINFNPQSNRIVSDTFNETIRIWDIKTGKCLKVLPAHSDPVTAIDFNRD  153 (262)
Q Consensus        79 -~~~i~v~d~~~~~~~~----~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~  153 (262)
                       .+.|++||+.+++...    ...+|...|.+++|+|++++|++|+.|+.|++||+++++++..+..|...|++++|+|+
T Consensus       113 ~dg~v~lWd~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~l~sgs~dg~v~iwd~~~~~~~~~~~~h~~~v~~v~~s~~  192 (357)
T 4g56_B          113 DSGAVELWEILEKESLLVNKFAKYEHDDIVKTLSVFSDGTQAVSGGKDFSVKVWDLSQKAVLKSYNAHSSEVNCVAACPG  192 (357)
T ss_dssp             TTSCEEEC--------CCCCEEECCCSSCEEEEEECSSSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTT
T ss_pred             CCCEEEEeeccccceeEEEeeccCCCCCCEEEEEECCCCCEEEEEeCCCeEEEEECCCCcEEEEEcCCCCCEEEEEEccC
Confidence             2289999998876543    23478999999999999999999999999999999999999999999999999999998


Q ss_pred             CC-EEEEEeCCCeEEEEeCCC----------------------CC-ccEEEEEcCCCeEEEEecCCCceeeEEeccCCce
Q 042146          154 GT-MIVTSSYDGLYRILDAST----------------------PN-GKFILVGTLDNTLRLWNYSTRKILKTYSGYTNSK  209 (262)
Q Consensus       154 ~~-~l~~~~~dg~i~~~d~~~----------------------~~-~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~  209 (262)
                      +. ++++++.||+|++||++.                      |+ +.+|++|+.|+.|++||+++++++..+.++...+
T Consensus       193 ~~~~~~s~~~dg~v~~wd~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~~la~g~~d~~i~~wd~~~~~~~~~~~~~~~~v  272 (357)
T 4g56_B          193 KDTIFLSCGEDGRILLWDTRKPKPATRIDFCASDTIPTSVTWHPEKDDTFACGDETGNVSLVNIKNPDSAQTSAVHSQNI  272 (357)
T ss_dssp             CSSCEEEEETTSCEEECCTTSSSCBCBCCCTTCCSCEEEEEECTTSTTEEEEEESSSCEEEEESSCGGGCEEECCCSSCE
T ss_pred             CCceeeeeccCCceEEEECCCCceeeeeeeccccccccchhhhhcccceEEEeecccceeEEECCCCcEeEEEeccceeE
Confidence            75 789999999999999876                      44 5689999999999999999999999999988877


Q ss_pred             eEEEEEEecCCCeeEE----------------------ccccceEEEEEcC-CCCeEEEeeecCCCcEEEEeecc
Q 042146          210 YCISSTFSVTNGKYIV----------------------SHRDPVISVASHP-AKNIIASGALDNDRTMKIWTQEK  261 (262)
Q Consensus       210 ~~~~~~~~~~~~~~~~----------------------~~~~~v~~~~~~p-~~~~l~~~~~d~d~~i~iw~~~~  261 (262)
                      .++.  |++....+++                      +|.+.|++++|+| ++.+|++++  .||+|++|+++.
T Consensus       273 ~~l~--~sp~~~~~lasgs~D~~i~iwd~~~~~~~~~~~H~~~V~~vafsP~d~~~l~s~s--~Dg~v~iW~~~~  343 (357)
T 4g56_B          273 TGLA--YSYHSSPFLASISEDCTVAVLDADFSEVFRDLSHRDFVTGVAWSPLDHSKFTTVG--WDHKVLHHHLPS  343 (357)
T ss_dssp             EEEE--ECSSSSCCEEEEETTSCEEEECTTSCEEEEECCCSSCEEEEEECSSSTTEEEEEE--TTSCEEEEECC-
T ss_pred             EEEE--EcCCCCCEEEEEeCCCEEEEEECCCCcEeEECCCCCCEEEEEEeCCCCCEEEEEc--CCCeEEEEECCC
Confidence            6654  4444433332                      1889999999999 789999999  899999999864

>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}

Probab=100.00  E-value=5.8e-41  Score=260.55  Aligned_cols=217  Identities=21%  Similarity=0.407  Sum_probs=189.0

Q ss_pred             cceecccCcCceEEEEEccC----CCeEEEecCCCeEEEeecCCCCCCCCCCCCCCccccCCcccccc------------
Q 042146           15 LTQTLNGHLRAVSYVKFSHD----GRLLTSSSAEKTLLTYSLSSISNFDSTPPSPLQKFTGHEQGISD------------   78 (262)
Q Consensus        15 ~~~~~~~h~~~v~~~~~~~~----~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~------------   78 (262)
                      +.+.+++|.++|.+++|+|+    +.+|++|+.|++|++|++.....      .....+.+|...+..            
T Consensus        24 ~~~~~~~H~~~V~~v~~~~~~~~~~~~l~tgs~D~~v~vW~~~~~~~------~~~~~l~gh~~~v~~~~~~~~~~~l~s   97 (321)
T 3ow8_A           24 LFKQEQAHDDAIWSVAWGTNKKENSETVVTGSLDDLVKVWKWRDERL------DLQWSLEGHQLGVVSVDISHTLPIAAS   97 (321)
T ss_dssp             EEEETTSSSSCEEEEEEC-------CEEEEEETTSCEEEEEEETTEE------EEEEEECCCSSCEEEEEECSSSSEEEE
T ss_pred             eeeecccCCCcEEEEEEecCCCCCCCEEEEEcCCCCEEEEECCCCCe------eeeeeeccCCCCEEEEEECCCCCEEEE
Confidence            45677899999999999985    56899999999999999854211      112233444444432            


Q ss_pred             ---ceeEEEEecCCCccceecccCCcceEEEEEeCCCCEEEeecCCCeEEEEECCCCeeeeeeecCCCCeeeEEEccCCC
Q 042146           79 ---LATIRLWDVPTATSLKTLIGHTNYVFCINFNPQSNRIVSDTFNETIRIWDIKTGKCLKVLPAHSDPVTAIDFNRDGT  155 (262)
Q Consensus        79 ---~~~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~  155 (262)
                         .+.|++||+.+++.+..+..|...+.+++|+|++++|++|+.||.|++||+++++....+..|...|.+++|+|+++
T Consensus        98 ~s~D~~i~lWd~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~g~~dg~v~i~~~~~~~~~~~~~~~~~~v~~~~~spdg~  177 (321)
T 3ow8_A           98 SSLDAHIRLWDLENGKQIKSIDAGPVDAWTLAFSPDSQYLATGTHVGKVNIFGVESGKKEYSLDTRGKFILSIAYSPDGK  177 (321)
T ss_dssp             EETTSEEEEEETTTTEEEEEEECCTTCCCCEEECTTSSEEEEECTTSEEEEEETTTCSEEEEEECSSSCEEEEEECTTSS
T ss_pred             EeCCCcEEEEECCCCCEEEEEeCCCccEEEEEECCCCCEEEEEcCCCcEEEEEcCCCceeEEecCCCceEEEEEECCCCC
Confidence               23899999999999999998999999999999999999999999999999999999999989999999999999999


Q ss_pred             EEEEEeCCCeEEEEeCCC--------------------CCccEEEEEcCCCeEEEEecCCCceeeEEeccCCceeEEEEE
Q 042146          156 MIVTSSYDGLYRILDAST--------------------PNGKFILVGTLDNTLRLWNYSTRKILKTYSGYTNSKYCISST  215 (262)
Q Consensus       156 ~l~~~~~dg~i~~~d~~~--------------------~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~  215 (262)
                      +|++++.||.|++||+++                    |++++|++|+.|+.|++||+++++++..+.+           
T Consensus       178 ~lasg~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~spd~~~l~s~s~dg~i~iwd~~~~~~~~~~~~-----------  246 (321)
T 3ow8_A          178 YLASGAIDGIINIFDIATGKLLHTLEGHAMPIRSLTFSPDSQLLVTASDDGYIKIYDVQHANLAGTLSG-----------  246 (321)
T ss_dssp             EEEEEETTSCEEEEETTTTEEEEEECCCSSCCCEEEECTTSCEEEEECTTSCEEEEETTTCCEEEEECC-----------
T ss_pred             EEEEEcCCCeEEEEECCCCcEEEEEcccCCceeEEEEcCCCCEEEEEcCCCeEEEEECCCcceeEEEcC-----------
Confidence            999999999999999876                    7899999999999999999999998888877           


Q ss_pred             EecCCCeeEEccccceEEEEEcCCCCeEEEeeecCCCcEEEEeecc
Q 042146          216 FSVTNGKYIVSHRDPVISVASHPAKNIIASGALDNDRTMKIWTQEK  261 (262)
Q Consensus       216 ~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~d~d~~i~iw~~~~  261 (262)
                                 |...|.+++|+|++.+|++++  .|++|++||+.+
T Consensus       247 -----------h~~~v~~~~~sp~~~~l~s~s--~D~~v~iwd~~~  279 (321)
T 3ow8_A          247 -----------HASWVLNVAFCPDDTHFVSSS--SDKSVKVWDVGT  279 (321)
T ss_dssp             -----------CSSCEEEEEECTTSSEEEEEE--TTSCEEEEETTT
T ss_pred             -----------CCCceEEEEECCCCCEEEEEe--CCCcEEEEeCCC
Confidence                       888999999999999999999  899999999864

>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}

Probab=100.00  E-value=3.2e-40  Score=258.37  Aligned_cols=238  Identities=18%  Similarity=0.233  Sum_probs=183.1

Q ss_pred             ccCcCceEEEEEccCCCeEEEecCCCeEEEeecCCCCC--C-CCCCCCCCccccCCcccc--------------ccceeE
Q 042146           20 NGHLRAVSYVKFSHDGRLLTSSSAEKTLLTYSLSSISN--F-DSTPPSPLQKFTGHEQGI--------------SDLATI   82 (262)
Q Consensus        20 ~~h~~~v~~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~--~-~~~~~~~~~~~~~~~~~v--------------~~~~~i   82 (262)
                      ..|...|.+++|+|||++|++++ |+++++||......  . .............+...+              ...+.|
T Consensus        27 ~~~~~~v~~~~fs~dG~~l~~~s-d~~~r~Wd~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~l~~~s~dg~v  105 (344)
T 4gqb_B           27 ACMERQLEAARYRSDGALLLGAS-SLSGRCWAGSLWLFKDPCAAPNEGFCSAGVQTEAGVADLTWVGERGILVASDSGAV  105 (344)
T ss_dssp             SSCCSEEEEEEECTTSCEEEEEE-CCSSSCCCEEEEEESSGGGTTCGGGCSEEEEESSCEEEEEEETTTEEEEEETTSEE
T ss_pred             ccccCCEEEEEECCCCCEEEEEe-CCceEEeeceeeeeccccccCCcceeeeeeccCCCEEEEEEeCCCeEEEEECCCEE
Confidence            45778899999999999999887 77888886321000  0 000000000000111111              122389


Q ss_pred             EEEecCCCcccee----cccCCcceEEEEEeCCCCEEEeecCCCeEEEEECCCCeeeeeeecCCCCeeeEEEccCCC-EE
Q 042146           83 RLWDVPTATSLKT----LIGHTNYVFCINFNPQSNRIVSDTFNETIRIWDIKTGKCLKVLPAHSDPVTAIDFNRDGT-MI  157 (262)
Q Consensus        83 ~v~d~~~~~~~~~----~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~-~l  157 (262)
                      ++||+.+++.+..    ..+|...|++++|+|++++|++|+.|++|++||+++++++..+.+|...|.+++|+|++. +|
T Consensus       106 ~lWd~~~~~~~~~~~~~~~~H~~~V~~v~~spdg~~l~sgs~d~~i~iwd~~~~~~~~~~~~h~~~V~~~~~~~~~~~~l  185 (344)
T 4gqb_B          106 ELWELDENETLIVSKFCKYEHDDIVSTVSVLSSGTQAVSGSKDICIKVWDLAQQVVLSSYRAHAAQVTCVAASPHKDSVF  185 (344)
T ss_dssp             EEEEECTTSSCEEEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECSSCTTEE
T ss_pred             EEEeccCCCceeEeeccccCCCCCEEEEEECCCCCEEEEEeCCCeEEEEECCCCcEEEEEcCcCCceEEEEecCCCCCce
Confidence            9999999876654    347999999999999999999999999999999999999999999999999999999875 78


Q ss_pred             EEEeCCCeEEEEeCCC----------------------C-CccEEEEEcCCCeEEEEecCCCceeeEEeccCCceeEEEE
Q 042146          158 VTSSYDGLYRILDAST----------------------P-NGKFILVGTLDNTLRLWNYSTRKILKTYSGYTNSKYCISS  214 (262)
Q Consensus       158 ~~~~~dg~i~~~d~~~----------------------~-~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~  214 (262)
                      ++++.|++|++||++.                      + ++++|++|+.||.|++||+++++++..+.+|...+.++. 
T Consensus       186 ~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~l~sg~~dg~v~~wd~~~~~~~~~~~~h~~~v~~v~-  264 (344)
T 4gqb_B          186 LSCSEDNRILLWDTRCPKPASQIGCSAPGYLPTSLAWHPQQSEVFVFGDENGTVSLVDTKSTSCVLSSAVHSQCVTGLV-  264 (344)
T ss_dssp             EEEETTSCEEEEETTSSSCEEECC----CCCEEEEEECSSCTTEEEEEETTSEEEEEESCC--CCEEEECCSSCEEEEE-
T ss_pred             eeeccccccccccccccceeeeeecceeeccceeeeecCCCCcceEEeccCCcEEEEECCCCcEEEEEcCCCCCEEEEE-
Confidence            9999999999999876                      3 567899999999999999999999999999988877664 


Q ss_pred             EEecCCCeeEE-c---------------------cccceEEEEEcCCCC-eEEEeeecCCCcEEEEeeccC
Q 042146          215 TFSVTNGKYIV-S---------------------HRDPVISVASHPAKN-IIASGALDNDRTMKIWTQEKE  262 (262)
Q Consensus       215 ~~~~~~~~~~~-~---------------------~~~~v~~~~~~p~~~-~l~~~~~d~d~~i~iw~~~~~  262 (262)
                       |++....+++ +                     |.+.|++++|+|+++ +|+++|  .|++|++|+++.+
T Consensus       265 -fsp~g~~~lasgs~D~~i~vwd~~~~~~~~~~~H~~~V~~v~~sp~~~~llas~s--~D~~v~~w~v~~~  332 (344)
T 4gqb_B          265 -FSPHSVPFLASLSEDCSLAVLDSSLSELFRSQAHRDFVRDATWSPLNHSLLTTVG--WDHQVVHHVVPTE  332 (344)
T ss_dssp             -ECSSSSCCEEEEETTSCEEEECTTCCEEEEECCCSSCEEEEEECSSSTTEEEEEE--TTSCEEEEECCC-
T ss_pred             -EccCCCeEEEEEeCCCeEEEEECCCCcEEEEcCCCCCEEEEEEeCCCCeEEEEEc--CCCeEEEEECCCC
Confidence             4443333332 2                     889999999999986 567888  8999999998753

>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*

Probab=100.00  E-value=5.7e-39  Score=251.39  Aligned_cols=218  Identities=24%  Similarity=0.404  Sum_probs=183.5

Q ss_pred             cccceecccCcCceEEEEEccCCCeEEEecCCCeEEEeecCCCCCCCCCCCCCCccccCCcccc---------------c
Q 042146           13 YTLTQTLNGHLRAVSYVKFSHDGRLLTSSSAEKTLLTYSLSSISNFDSTPPSPLQKFTGHEQGI---------------S   77 (262)
Q Consensus        13 ~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v---------------~   77 (262)
                      .+...++++|.++|.+++|+|++++|++|+.||+|++||+......        ..+..+...+               .
T Consensus        45 ~~~~~~l~gH~~~v~~~~~s~d~~~l~s~s~Dg~v~iWd~~~~~~~--------~~~~~~~~~v~~~~~s~~~~~l~s~~  116 (340)
T 1got_B           45 MRTRRTLRGHLAKIYAMHWGTDSRLLLSASQDGKLIIWDSYTTNKV--------HAIPLRSSWVMTCAYAPSGNYVACGG  116 (340)
T ss_dssp             CCEEEEECCCSSCEEEEEECTTSSEEEEEETTTEEEEEETTTCCEE--------EEEECSSSCEEEEEECTTSSEEEEEE
T ss_pred             chhheeecCCCCceEEEEECCCCCEEEEEeCCCcEEEEECCCCCcc--------eEeecCCccEEEEEECCCCCEEEEEe
Confidence            4566789999999999999999999999999999999997653221        1122222221               1


Q ss_pred             cceeEEEEecCCCc----cceecccCCcceEEEEEeCCCCEEEeecCCCeEEEEECCCCeeeeeeecCCCCeeeEEEccC
Q 042146           78 DLATIRLWDVPTAT----SLKTLIGHTNYVFCINFNPQSNRIVSDTFNETIRIWDIKTGKCLKVLPAHSDPVTAIDFNRD  153 (262)
Q Consensus        78 ~~~~i~v~d~~~~~----~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~  153 (262)
                      ..+.+++|++.+.+    ....+.+|...|.++.|++++. +++++.|+.|++||+++++++..+.+|.+.|.+++|+|+
T Consensus       117 ~d~~v~iw~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~-l~s~s~d~~i~~wd~~~~~~~~~~~~h~~~v~~~~~~~~  195 (340)
T 1got_B          117 LDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQ-IVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPD  195 (340)
T ss_dssp             TTCEEEEEETTTCSBSCEEEEEEECCSSCEEEEEEEETTE-EEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTT
T ss_pred             CCCeEEEEECccCCCcceeEEEecCCCccEEEEEECCCCc-EEEEECCCcEEEEECCCCcEEEEEcCCCCceEEEEECCC
Confidence            22389999998753    3456778999999999998765 888999999999999999999999999999999999999


Q ss_pred             CCEEEEEeCCCeEEEEeCCC--------------------CCccEEEEEcCCCeEEEEecCCCceeeEEeccCCceeEEE
Q 042146          154 GTMIVTSSYDGLYRILDAST--------------------PNGKFILVGTLDNTLRLWNYSTRKILKTYSGYTNSKYCIS  213 (262)
Q Consensus       154 ~~~l~~~~~dg~i~~~d~~~--------------------~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~  213 (262)
                      +++|++|+.|+.|++||++.                    |++++|++|+.||.|++||+++++.+..+....       
T Consensus       196 ~~~l~sg~~d~~v~~wd~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~~~-------  268 (340)
T 1got_B          196 TRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYSHDN-------  268 (340)
T ss_dssp             SSEEEEEETTSCEEEEETTTCSEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCTT-------
T ss_pred             CCEEEEEeCCCcEEEEECCCCeeEEEEcCCcCCEEEEEEcCCCCEEEEEcCCCcEEEEECCCCcEEEEEccCC-------
Confidence            99999999999999999876                    789999999999999999999988777665211       


Q ss_pred             EEEecCCCeeEEccccceEEEEEcCCCCeEEEeeecCCCcEEEEeecc
Q 042146          214 STFSVTNGKYIVSHRDPVISVASHPAKNIIASGALDNDRTMKIWTQEK  261 (262)
Q Consensus       214 ~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~d~d~~i~iw~~~~  261 (262)
                                   +...|.+++|+|++++|++|+  .|+.|++||+.+
T Consensus       269 -------------~~~~v~~~~~s~~g~~l~~g~--~d~~i~vwd~~~  301 (340)
T 1got_B          269 -------------IICGITSVSFSKSGRLLLAGY--DDFNCNVWDALK  301 (340)
T ss_dssp             -------------CCSCEEEEEECTTSSEEEEEE--TTSEEEEEETTT
T ss_pred             -------------cccceEEEEECCCCCEEEEEC--CCCeEEEEEccc
Confidence                         445799999999999999999  899999999753

>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R

Probab=100.00  E-value=2.5e-38  Score=248.05  Aligned_cols=243  Identities=24%  Similarity=0.387  Sum_probs=186.1

Q ss_pred             ccccceecccCcCceEEEEE-----cc-CCCeEEEecCCCeEEEeecCCCCCCCCCCCCCCccccCCccccccc------
Q 042146           12 PYTLTQTLNGHLRAVSYVKF-----SH-DGRLLTSSSAEKTLLTYSLSSISNFDSTPPSPLQKFTGHEQGISDL------   79 (262)
Q Consensus        12 ~~~~~~~~~~h~~~v~~~~~-----~~-~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~------   79 (262)
                      .......+++|.++|++++|     ++ ++++|++|+.|++|++||+....... ....+...+.+|...+..+      
T Consensus        10 ~~~~~~~l~gH~~~V~~~~~~~s~~~~~d~~~l~sgs~D~~v~iWd~~~~~~~~-~~~~~~~~l~~h~~~V~~~~~~~~~   88 (343)
T 2xzm_R           10 QVVKRGILEGHSDWVTSIVAGFSQKENEDSPVLISGSRDKTVMIWKLYEEEQNG-YFGIPHKALTGHNHFVSDLALSQEN   88 (343)
T ss_dssp             EEEEEEEEECCSSCEEEEEECCCSSTTCCCCEEEEEETTSCEEEEEECSSCCSS-BSEEEEEEECCCSSCEEEEEECSST
T ss_pred             EeeeeeeeccchhhhhheeeEEEeecCCCCCEEEEEcCCCEEEEEECCcCCccc-ccccccchhccCCCceEEEEECCCC
Confidence            45667889999999999999     76 89999999999999999986532110 0111223344555444333      


Q ss_pred             ---------eeEEEEecCCCccceecccCCcceEEEEEeCCCCEEEeecCCCeEEEEECCCCeeeeee---ecCCCCeee
Q 042146           80 ---------ATIRLWDVPTATSLKTLIGHTNYVFCINFNPQSNRIVSDTFNETIRIWDIKTGKCLKVL---PAHSDPVTA  147 (262)
Q Consensus        80 ---------~~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~---~~~~~~v~~  147 (262)
                               +.|++||+++++.+..+.+|...|.+++|+|++++|++++.|+.|++||+.... ....   ..|...|.+
T Consensus        89 ~~l~s~s~D~~v~lwd~~~~~~~~~~~~h~~~v~~v~~sp~~~~l~s~~~d~~i~~wd~~~~~-~~~~~~~~~~~~~v~~  167 (343)
T 2xzm_R           89 CFAISSSWDKTLRLWDLRTGTTYKRFVGHQSEVYSVAFSPDNRQILSAGAEREIKLWNILGEC-KFSSAEKENHSDWVSC  167 (343)
T ss_dssp             TEEEEEETTSEEEEEETTSSCEEEEEECCCSCEEEEEECSSTTEEEEEETTSCEEEEESSSCE-EEECCTTTSCSSCEEE
T ss_pred             CEEEEEcCCCcEEEEECCCCcEEEEEcCCCCcEEEEEECCCCCEEEEEcCCCEEEEEeccCCc-eeeeecccCCCceeee
Confidence                     289999999999999999999999999999999999999999999999998443 3333   268889999


Q ss_pred             EEEccCC----------CEEEEEeCCCeEEEEeCCC-------------------CCccEEEEEcCCCeEEEEecCC-Cc
Q 042146          148 IDFNRDG----------TMIVTSSYDGLYRILDAST-------------------PNGKFILVGTLDNTLRLWNYST-RK  197 (262)
Q Consensus       148 ~~~~~~~----------~~l~~~~~dg~i~~~d~~~-------------------~~~~~l~~~~~dg~i~i~d~~~-~~  197 (262)
                      ++|+|++          .+|++++.|+.|++||...                   |++++|++|+.||.|++||+.. ..
T Consensus       168 ~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~h~~~v~~~~~s~~g~~l~sgs~dg~v~iwd~~~~~~  247 (343)
T 2xzm_R          168 VRYSPIMKSANKVQPFAPYFASVGWDGRLKVWNTNFQIRYTFKAHESNVNHLSISPNGKYIATGGKDKKLLIWDILNLTY  247 (343)
T ss_dssp             EEECCCCCSCSCCCSSCCEEEEEETTSEEEEEETTTEEEEEEECCSSCEEEEEECTTSSEEEEEETTCEEEEEESSCCSS
T ss_pred             eeeccccccccccCCCCCEEEEEcCCCEEEEEcCCCceeEEEcCccccceEEEECCCCCEEEEEcCCCeEEEEECCCCcc
Confidence            9999986          7899999999999999653                   8999999999999999999954 33


Q ss_pred             eeeEEeccCCceeEEEEEEecCCCeeE----------------------------------EccccceEEEEEcCCCCeE
Q 042146          198 ILKTYSGYTNSKYCISSTFSVTNGKYI----------------------------------VSHRDPVISVASHPAKNII  243 (262)
Q Consensus       198 ~~~~~~~~~~~~~~~~~~~~~~~~~~~----------------------------------~~~~~~v~~~~~~p~~~~l  243 (262)
                      +...+. +...+.++  .|++....+.                                  .+|...|.+++|+|++++|
T Consensus       248 ~~~~~~-~~~~v~~v--~~sp~~~~la~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l  324 (343)
T 2xzm_R          248 PQREFD-AGSTINQI--AFNPKLQWVAVGTDQGVKIFNLMTQSKAPVCTIEAEPITKAEGQKGKNPQCTSLAWNALGKKL  324 (343)
T ss_dssp             CSEEEE-CSSCEEEE--EECSSSCEEEEEESSCEEEEESSSCCSCSEEECCCCSGGGBTTBCCSCCCEEEEEECSSSCCE
T ss_pred             cceeec-CCCcEEEE--EECCCCCEEEEECCCCEEEEEeCCCCCCceEEeecCcchhhhhhcCCCCceEEEEECCCCCeE
Confidence            333332 22223322  2222111110                                  1356679999999999999


Q ss_pred             EEeeecCCCcEEEEeecc
Q 042146          244 ASGALDNDRTMKIWTQEK  261 (262)
Q Consensus       244 ~~~~~d~d~~i~iw~~~~  261 (262)
                      ++|+  .||.|++|+++.
T Consensus       325 ~sg~--~Dg~v~~w~~~~  340 (343)
T 2xzm_R          325 FAGF--TDGVIRTFSFET  340 (343)
T ss_dssp             EEEE--TTSEEEEEEEEE
T ss_pred             EEec--CCceEEEEEEEc
Confidence            9999  899999999863

>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens}

Probab=100.00  E-value=4.6e-39  Score=252.40  Aligned_cols=235  Identities=20%  Similarity=0.336  Sum_probs=184.3

Q ss_pred             CCCCceeeecccc-----cceecccCcCceEEEEEccCCCeEEEecCCCeEEEeecCCCCCCCCCCCCCCccccCCcccc
Q 042146            2 SSDRSLESFRPYT-----LTQTLNGHLRAVSYVKFSHDGRLLTSSSAEKTLLTYSLSSISNFDSTPPSPLQKFTGHEQGI   76 (262)
Q Consensus         2 s~d~~i~~~~~~~-----~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v   76 (262)
                      +.|++|+.|+...     ......+|...|.+++|+|++++|++|+.|+++++|++....      ......+.+|...+
T Consensus        35 ~~D~~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~s~D~~v~iw~~~~~~------~~~~~~~~~h~~~v  108 (345)
T 3fm0_A           35 GGDRRIRIWGTEGDSWICKSVLSEGHQRTVRKVAWSPCGNYLASASFDATTCIWKKNQDD------FECVTTLEGHENEV  108 (345)
T ss_dssp             ETTSCEEEEEEETTEEEEEEEECSSCSSCEEEEEECTTSSEEEEEETTSCEEEEEECCC-------EEEEEEECCCSSCE
T ss_pred             cCCCeEEEEEcCCCcceeeeeeccccCCcEEEEEECCCCCEEEEEECCCcEEEEEccCCC------eEEEEEccCCCCCc
Confidence            4689999986332     122346899999999999999999999999999999976431      11122333444433


Q ss_pred             ccc---------------eeEEEEecCCCc---cceecccCCcceEEEEEeCCCCEEEeecCCCeEEEEECCCCe--eee
Q 042146           77 SDL---------------ATIRLWDVPTAT---SLKTLIGHTNYVFCINFNPQSNRIVSDTFNETIRIWDIKTGK--CLK  136 (262)
Q Consensus        77 ~~~---------------~~i~v~d~~~~~---~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~--~~~  136 (262)
                      ..+               +.|++||+.++.   .+..+.+|...|.+++|+|++++|++|+.|+.|++||+++++  +..
T Consensus       109 ~~v~~sp~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~s~d~~i~~w~~~~~~~~~~~  188 (345)
T 3fm0_A          109 KSVAWAPSGNLLATCSRDKSVWVWEVDEEDEYECVSVLNSHTQDVKHVVWHPSQELLASASYDDTVKLYREEEDDWVCCA  188 (345)
T ss_dssp             EEEEECTTSSEEEEEETTSCEEEEEECTTSCEEEEEEECCCCSCEEEEEECSSSSCEEEEETTSCEEEEEEETTEEEEEE
T ss_pred             eEEEEeCCCCEEEEEECCCeEEEEECCCCCCeEEEEEecCcCCCeEEEEECCCCCEEEEEeCCCcEEEEEecCCCEEEEE
Confidence            322               289999998764   345678899999999999999999999999999999998775  456


Q ss_pred             eeecCCCCeeeEEEccCCCEEEEEeCCCeEEEEeCCC------------------------------------CCccEEE
Q 042146          137 VLPAHSDPVTAIDFNRDGTMIVTSSYDGLYRILDAST------------------------------------PNGKFIL  180 (262)
Q Consensus       137 ~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~d~~~------------------------------------~~~~~l~  180 (262)
                      .+.+|...|.+++|+|++++|++++.|++|++||...                                    +++..|+
T Consensus       189 ~~~~h~~~v~~l~~sp~g~~l~s~s~D~~v~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~  268 (345)
T 3fm0_A          189 TLEGHESTVWSLAFDPSGQRLASCSDDRTVRIWRQYLPGNEQGVACSGSDPSWKCICTLSGFHSRTIYDIAWCQLTGALA  268 (345)
T ss_dssp             EECCCSSCEEEEEECTTSSEEEEEETTSCEEEEEEECTTCTTCCCCC---CEEEEEEEECSSCSSCEEEEEECTTTCCEE
T ss_pred             EecCCCCceEEEEECCCCCEEEEEeCCCeEEEeccccCCCCccceeeccCCccceeEEecCCCCCcEEEEEEecCCCEEE
Confidence            7889999999999999999999999999999998521                                    5567899


Q ss_pred             EEcCCCeEEEEecCCCce----eeEEeccCCceeEEEEEEecCCCeeEEccccceEEEEEcCCCC-eEEEeeecCCCcEE
Q 042146          181 VGTLDNTLRLWNYSTRKI----LKTYSGYTNSKYCISSTFSVTNGKYIVSHRDPVISVASHPAKN-IIASGALDNDRTMK  255 (262)
Q Consensus       181 ~~~~dg~i~i~d~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~-~l~~~~~d~d~~i~  255 (262)
                      +++.|+.|++|+...+..    ...+..+                 ...+|...|++++|+|++. +|++|+  .||.|+
T Consensus       269 s~~~d~~i~vw~~~~~~~~~~~~~~~~~~-----------------~~~~h~~~V~~v~~~p~~~~~laS~s--~Dg~v~  329 (345)
T 3fm0_A          269 TACGDDAIRVFQEDPNSDPQQPTFSLTAH-----------------LHQAHSQDVNCVAWNPKEPGLLASCS--DDGEVA  329 (345)
T ss_dssp             EEETTSCEEEEEECTTSCTTSCCEEEEEE-----------------ETTSSSSCEEEEEECSSSTTEEEEEE--TTSCEE
T ss_pred             EEeCCCeEEEEEeCCCCCcceeeEEEEee-----------------ecccccCcEeEeEEeCCCceEEEEcC--CCCcEE
Confidence            999999999999875431    1111100                 0012889999999999984 999999  899999


Q ss_pred             EEeecc
Q 042146          256 IWTQEK  261 (262)
Q Consensus       256 iw~~~~  261 (262)
                      +|++.+
T Consensus       330 ~W~~~~  335 (345)
T 3fm0_A          330 FWKYQR  335 (345)
T ss_dssp             EEEECC
T ss_pred             EEEecC
Confidence            999865

>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A

Probab=100.00  E-value=8.7e-39  Score=268.45  Aligned_cols=234  Identities=18%  Similarity=0.270  Sum_probs=195.2

Q ss_pred             CCceeeec--ccccceecccCcCceEEEEEccCCCeEEEecCCCeEEEeecCCCCCC-----C------------C----
Q 042146            4 DRSLESFR--PYTLTQTLNGHLRAVSYVKFSHDGRLLTSSSAEKTLLTYSLSSISNF-----D------------S----   60 (262)
Q Consensus         4 d~~i~~~~--~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~-----~------------~----   60 (262)
                      ++++..|+  ..+....+.+|...|++++|+|+|++||+|+.|++|+|||+......     .            .    
T Consensus        38 ~~~v~l~~~~~~~~~~~~~~h~~~v~~~~~spdg~~lasg~~d~~v~lWd~~~~~~~~~~~~~~~~~~v~~v~fs~dg~~  117 (611)
T 1nr0_A           38 GTSVYTVPVGSLTDTEIYTEHSHQTTVAKTSPSGYYCASGDVHGNVRIWDTTQTTHILKTTIPVFSGPVKDISWDSESKR  117 (611)
T ss_dssp             TTEEEEEETTCSSCCEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEESSSTTCCEEEEEECSSSCEEEEEECTTSCE
T ss_pred             CCEEEEecCCCcccCeEecCCCCceEEEEECCCCcEEEEEeCCCCEEEeECCCCcceeeEeecccCCceEEEEECCCCCE
Confidence            34565665  45678889999999999999999999999999999999998532110     0            0    


Q ss_pred             -----------------CCCCCCccccCCccccccc----------------eeEEEEecCCCccceecccCCcceEEEE
Q 042146           61 -----------------TPPSPLQKFTGHEQGISDL----------------ATIRLWDVPTATSLKTLIGHTNYVFCIN  107 (262)
Q Consensus        61 -----------------~~~~~~~~~~~~~~~v~~~----------------~~i~v~d~~~~~~~~~~~~~~~~v~~~~  107 (262)
                                       ........+.+|...+..+                +.|++||..+++....+.+|...|.+++
T Consensus       118 l~~~~~~~~~~~~v~~wd~~~~~~~l~gh~~~v~~v~f~p~~~~~l~s~s~D~~v~lwd~~~~~~~~~l~~H~~~V~~v~  197 (611)
T 1nr0_A          118 IAAVGEGRERFGHVFLFDTGTSNGNLTGQARAMNSVDFKPSRPFRIISGSDDNTVAIFEGPPFKFKSTFGEHTKFVHSVR  197 (611)
T ss_dssp             EEEEECCSSCSEEEEETTTCCBCBCCCCCSSCEEEEEECSSSSCEEEEEETTSCEEEEETTTBEEEEEECCCSSCEEEEE
T ss_pred             EEEEECCCCceeEEEEeeCCCCcceecCCCCCceEEEECCCCCeEEEEEeCCCeEEEEECCCCeEeeeeccccCceEEEE
Confidence                             0011122234444433222                2899999998888889999999999999


Q ss_pred             EeCCCCEEEeecCCCeEEEEECCCCeeeeeee-------cCCCCeeeEEEccCCCEEEEEeCCCeEEEEeCCC-------
Q 042146          108 FNPQSNRIVSDTFNETIRIWDIKTGKCLKVLP-------AHSDPVTAIDFNRDGTMIVTSSYDGLYRILDAST-------  173 (262)
Q Consensus       108 ~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~-------~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~d~~~-------  173 (262)
                      |+|++++|++|+.|++|++||+++++++..+.       +|.+.|.+++|+|++++|++++.|++|++||+++       
T Consensus       198 fspdg~~las~s~D~~i~lwd~~~g~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~l~s~s~D~~v~lWd~~~~~~~~~~  277 (611)
T 1nr0_A          198 YNPDGSLFASTGGDGTIVLYNGVDGTKTGVFEDDSLKNVAHSGSVFGLTWSPDGTKIASASADKTIKIWNVATLKVEKTI  277 (611)
T ss_dssp             ECTTSSEEEEEETTSCEEEEETTTCCEEEECBCTTSSSCSSSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEE
T ss_pred             ECCCCCEEEEEECCCcEEEEECCCCcEeeeeccccccccccCCCEEEEEECCCCCEEEEEeCCCeEEEEeCCCCceeeee
Confidence            99999999999999999999999998888774       7999999999999999999999999999999875       


Q ss_pred             --------------CCccEEEEEcCCCeEEEEecCCCceeeEEeccCCceeEEEEEEecCCCeeEEccccceEEEEEcCC
Q 042146          174 --------------PNGKFILVGTLDNTLRLWNYSTRKILKTYSGYTNSKYCISSTFSVTNGKYIVSHRDPVISVASHPA  239 (262)
Q Consensus       174 --------------~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~  239 (262)
                                    .+++.+++++.|+.+++||.+.+++...+.+                      |...|++++|+|+
T Consensus       278 ~~~~~~~~~~~~~~~~~~~l~s~s~d~~i~~~~~~~~~~~~~~~g----------------------h~~~v~~l~~spd  335 (611)
T 1nr0_A          278 PVGTRIEDQQLGIIWTKQALVSISANGFINFVNPELGSIDQVRYG----------------------HNKAITALSSSAD  335 (611)
T ss_dssp             ECCSSGGGCEEEEEECSSCEEEEETTCCEEEEETTTTEEEEEECC----------------------CSSCEEEEEECTT
T ss_pred             cCCCCccceeEEEEEcCCEEEEEeCCCcEEEEeCCCCCcceEEcC----------------------CCCCEEEEEEeCC
Confidence                          1466789999999999999998887777766                      8899999999999


Q ss_pred             CCeEEEeeecCCCcEEEEeecc
Q 042146          240 KNIIASGALDNDRTMKIWTQEK  261 (262)
Q Consensus       240 ~~~l~~~~~d~d~~i~iw~~~~  261 (262)
                      +++|++++  .|++|++||+..
T Consensus       336 g~~l~s~s--~D~~v~~Wd~~~  355 (611)
T 1nr0_A          336 GKTLFSAD--AEGHINSWDIST  355 (611)
T ss_dssp             SSEEEEEE--TTSCEEEEETTT
T ss_pred             CCEEEEEe--CCCcEEEEECCC
Confidence            99999999  899999999863

>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a

Probab=100.00  E-value=1.4e-38  Score=248.66  Aligned_cols=232  Identities=20%  Similarity=0.372  Sum_probs=180.0

Q ss_pred             ccccceecccCcCceEEEEEccC-CCeEEEecCCCeEEEeecCCCCCCCCCCCCCCccccCCccccccce----------
Q 042146           12 PYTLTQTLNGHLRAVSYVKFSHD-GRLLTSSSAEKTLLTYSLSSISNFDSTPPSPLQKFTGHEQGISDLA----------   80 (262)
Q Consensus        12 ~~~~~~~~~~h~~~v~~~~~~~~-~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~----------   80 (262)
                      ..++..+|++|.++|++++|+|+ +++|+||+.|++|++||+.......   ..+...+.+|...+..+.          
T Consensus        27 ~~~l~~tL~GH~~~V~~v~~sp~~~~~l~S~s~D~~i~vWd~~~~~~~~---~~~~~~l~~h~~~V~~~~~s~dg~~l~s  103 (340)
T 4aow_A           27 QMTLRGTLKGHNGWVTQIATTPQFPDMILSASRDKTIIMWKLTRDETNY---GIPQRALRGHSHFVSDVVISSDGQFALS  103 (340)
T ss_dssp             EEEEEEEECCCSSCEEEEEECTTCTTEEEEEETTSCEEEEEECCSSSCS---EEEEEEECCCSSCEEEEEECTTSSEEEE
T ss_pred             ceEEEEEECCccCCEEEEEEeCCCCCEEEEEcCCCeEEEEECCCCCccc---ceeeEEEeCCCCCEEEEEECCCCCEEEE
Confidence            44567789999999999999997 6899999999999999987532210   011112222222221111          


Q ss_pred             -----------------------------------------------eEEEEecCCCcc-ceecccCCcceEEEEEeCCC
Q 042146           81 -----------------------------------------------TIRLWDVPTATS-LKTLIGHTNYVFCINFNPQS  112 (262)
Q Consensus        81 -----------------------------------------------~i~v~d~~~~~~-~~~~~~~~~~v~~~~~~~~~  112 (262)
                                                                     .+++||...... .....+|...+.+++|++++
T Consensus       104 ~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~~~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~  183 (340)
T 4aow_A          104 GSWDGTLRLWDLTTGTTTRRFVGHTKDVLSVAFSSDNRQIVSGSRDKTIKLWNTLGVCKYTVQDESHSEWVSCVRFSPNS  183 (340)
T ss_dssp             EETTSEEEEEETTTTEEEEEEECCSSCEEEEEECTTSSCEEEEETTSCEEEECTTSCEEEEECSSSCSSCEEEEEECSCS
T ss_pred             EcccccceEEeecccceeeeecCCCCceeEEEEeecCccceeecCCCeEEEEEeCCCceEEEEeccccCcccceEEccCC
Confidence                                                           677777765433 33456788999999998854


Q ss_pred             --CEEEeecCCCeEEEEECCCCeeeeeeecCCCCeeeEEEccCCCEEEEEeCCCeEEEEeCCC-----------------
Q 042146          113 --NRIVSDTFNETIRIWDIKTGKCLKVLPAHSDPVTAIDFNRDGTMIVTSSYDGLYRILDAST-----------------  173 (262)
Q Consensus       113 --~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~d~~~-----------------  173 (262)
                        .++++++.|+.|++||+++++.+..+.+|.++|++++|+|++++|++|+.||.|++||++.                 
T Consensus       184 ~~~~~~s~~~d~~i~i~d~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~v~~~~  263 (340)
T 4aow_A          184 SNPIIVSCGWDKLVKVWNLANCKLKTNHIGHTGYLNTVTVSPDGSLCASGGKDGQAMLWDLNEGKHLYTLDGGDIINALC  263 (340)
T ss_dssp             SSCEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTCEEEEEETTTTEEEEEEECSSCEEEEE
T ss_pred             CCcEEEEEcCCCEEEEEECCCCceeeEecCCCCcEEEEEECCCCCEEEEEeCCCeEEEEEeccCceeeeecCCceEEeee
Confidence              5788999999999999999999999999999999999999999999999999999999987                 


Q ss_pred             -CCccEEEEEcCCCeEEEEecCCCceeeEEeccCCceeEEEEEEecCCCeeEEccccceEEEEEcCCCCeEEEeeecCCC
Q 042146          174 -PNGKFILVGTLDNTLRLWNYSTRKILKTYSGYTNSKYCISSTFSVTNGKYIVSHRDPVISVASHPAKNIIASGALDNDR  252 (262)
Q Consensus       174 -~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~d~d~  252 (262)
                       ..+..+++++.|+.|++||++++..+..+......             ....+|...|++++|+|++++|++|+  .||
T Consensus       264 ~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~-------------~~~~~h~~~v~~l~~s~dg~~l~sgs--~Dg  328 (340)
T 4aow_A          264 FSPNRYWLCAATGPSIKIWDLEGKIIVDELKQEVIS-------------TSSKAEPPQCTSLAWSADGQTLFAGY--TDN  328 (340)
T ss_dssp             ECSSSSEEEEEETTEEEEEETTTTEEEEEECCC--------------------CCCCCEEEEEECTTSSEEEEEE--TTS
T ss_pred             cCCCCceeeccCCCEEEEEECCCCeEEEecccccee-------------eeccCCCCCEEEEEECCCCCEEEEEe--CCC
Confidence             23345667778999999999998888777643211             11123889999999999999999999  899


Q ss_pred             cEEEEeecc
Q 042146          253 TMKIWTQEK  261 (262)
Q Consensus       253 ~i~iw~~~~  261 (262)
                      .|+||+++.
T Consensus       329 ~v~iW~~~t  337 (340)
T 4aow_A          329 LVRVWQVTI  337 (340)
T ss_dssp             CEEEEEEEC
T ss_pred             EEEEEeCCC
Confidence            999999874

>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae}

Probab=100.00  E-value=1.2e-38  Score=248.47  Aligned_cols=235  Identities=22%  Similarity=0.360  Sum_probs=177.9

Q ss_pred             CCCCceeeeccc----ccceec-cc-CcCceEEEEEccCCCeEEEecCCCeEEEeecCCCCCCCCCCCCCCccccCCccc
Q 042146            2 SSDRSLESFRPY----TLTQTL-NG-HLRAVSYVKFSHDGRLLTSSSAEKTLLTYSLSSISNFDSTPPSPLQKFTGHEQG   75 (262)
Q Consensus         2 s~d~~i~~~~~~----~~~~~~-~~-h~~~v~~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~   75 (262)
                      +.|++|+.|+..    +....+ .+ |.++|.+++|+|++++|++|+.|++|++|+++.... ..........+.+|...
T Consensus        31 ~~D~~i~lw~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~~las~s~D~~v~iw~~~~~~~-~~~~~~~~~~~~~h~~~  109 (330)
T 2hes_X           31 STDRKIKLVSVKYDDFTLIDVLDETAHKKAIRSVAWRPHTSLLAAGSFDSTVSIWAKEESAD-RTFEMDLLAIIEGHENE  109 (330)
T ss_dssp             ESSSCEEEEECSSSCCEEEEEECTTCCCSCEEEEEECTTSSEEEEEETTSCEEEEEC--------CCCEEEEEEC----C
T ss_pred             cCCCEEEEEEecCCCeEEEEEEecCCccCCEEEEEECCCCCEEEEEeCCCcEEEEEcccCcC-ccccceeEEEEcCCCCc
Confidence            468999998632    345555 44 999999999999999999999999999999854211 00111223334455544


Q ss_pred             cccce---------------eEEEEecCCC----ccceecccCCcceEEEEEeCCCCEEEeecCCCeEEEEECCCC--ee
Q 042146           76 ISDLA---------------TIRLWDVPTA----TSLKTLIGHTNYVFCINFNPQSNRIVSDTFNETIRIWDIKTG--KC  134 (262)
Q Consensus        76 v~~~~---------------~i~v~d~~~~----~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~--~~  134 (262)
                      +..+.               .|++||+...    +.+..+.+|...|.+++|+|++++|++++.|++|++||++++  ++
T Consensus       110 V~~v~~sp~g~~las~s~D~~v~iwd~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~D~~i~iW~~~~~~~~~  189 (330)
T 2hes_X          110 VKGVAWSNDGYYLATCSRDKSVWIWETDESGEEYECISVLQEHSQDVKHVIWHPSEALLASSSYDDTVRIWKDYDDDWEC  189 (330)
T ss_dssp             EEEEEECTTSCEEEEEETTSCEEEEECCTTCCCCEEEEEECCCSSCEEEEEECSSSSEEEEEETTSCEEEEEEETTEEEE
T ss_pred             EEEEEECCCCCEEEEEeCCCEEEEEeccCCCCCeEEEEEeccCCCceEEEEECCCCCEEEEEcCCCeEEEEECCCCCeeE
Confidence            43332               8999999432    355678899999999999999999999999999999998766  67


Q ss_pred             eeeeecCCCCeeeEEEccC--CCEEEEEeCCCeEEEEeCCC----------------------------CCccEEEEEcC
Q 042146          135 LKVLPAHSDPVTAIDFNRD--GTMIVTSSYDGLYRILDAST----------------------------PNGKFILVGTL  184 (262)
Q Consensus       135 ~~~~~~~~~~v~~~~~~~~--~~~l~~~~~dg~i~~~d~~~----------------------------~~~~~l~~~~~  184 (262)
                      +..+.+|...|.+++|+|+  +..|++++.|++|++||++.                            ..+.+|++++.
T Consensus       190 ~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~D~~v~iw~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~~~~l~s~~~  269 (330)
T 2hes_X          190 VAVLNGHEGTVWSSDFDKTEGVFRLCSGSDDSTVRVWKYMGDDEDDQQEWVCEAILPDVHKRQVYNVAWGFNGLIASVGA  269 (330)
T ss_dssp             EEEECCCSSCEEEEEECCSSSSCEEEEEETTSCEEEEEEEEECTTSCEEEEEEEECCSCCSSCEEEEEECTTSCEEEEET
T ss_pred             EEEccCCCCcEEEEEecCCCCeeEEEEEeCCCeEEEEEecCCCccccceeEEeeecccccccceEEEEEcCCCEEEEEeC
Confidence            8888999999999999998  67899999999999998742                            12457999999


Q ss_pred             CCeEEEEecCCCce--eeEE-eccCCceeEEEEEEecCCCeeEEcccc-ceEEEEEcC--CCCeEEEeeecCCCcEEEEe
Q 042146          185 DNTLRLWNYSTRKI--LKTY-SGYTNSKYCISSTFSVTNGKYIVSHRD-PVISVASHP--AKNIIASGALDNDRTMKIWT  258 (262)
Q Consensus       185 dg~i~i~d~~~~~~--~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~-~v~~~~~~p--~~~~l~~~~~d~d~~i~iw~  258 (262)
                      ||.|++||..+++.  .... ..                      |.. .|.+++|+|  ++++|++|+  .||.|++|+
T Consensus       270 dg~v~iw~~~~~~~~~~~~~~~~----------------------h~~~~v~~v~~~~~~~~~~las~s--~Dg~v~~W~  325 (330)
T 2hes_X          270 DGVLAVYEEVDGEWKVFAKRALC----------------------HGVYEINVVKWLELNGKTILATGG--DDGIVNFWS  325 (330)
T ss_dssp             TSCEEEEEEETTEEEEEEEESCT----------------------TTTSCEEEEEEC-----CCEEEEE--TTSEEEEEE
T ss_pred             CCEEEEEEcCCCceEEEeccccc----------------------cccceEEEEEEecCCCceEEEEec--CCCcEEEEE
Confidence            99999999887642  2222 22                      666 899999999  689999999  899999999


Q ss_pred             ecc
Q 042146          259 QEK  261 (262)
Q Consensus       259 ~~~  261 (262)
                      +++
T Consensus       326 ~~~  328 (330)
T 2hes_X          326 LEK  328 (330)
T ss_dssp             C--
T ss_pred             ecc
Confidence            865

>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}

Probab=100.00  E-value=6.8e-38  Score=246.53  Aligned_cols=227  Identities=21%  Similarity=0.318  Sum_probs=182.8

Q ss_pred             cccceecccCcCceEEEEEccCCCeEEEecCCCeEEEeecCCCCCCCCCC--CCCCcc--ccCCcccc---ccceeEEEE
Q 042146           13 YTLTQTLNGHLRAVSYVKFSHDGRLLTSSSAEKTLLTYSLSSISNFDSTP--PSPLQK--FTGHEQGI---SDLATIRLW   85 (262)
Q Consensus        13 ~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~--~~~~~~--~~~~~~~v---~~~~~i~v~   85 (262)
                      .+...++++|.++|++++|+|++++|++|+.||+|++||...........  ...+..  +......+   ...+.+++|
T Consensus        54 ~~~~~~l~gH~~~V~~~~~s~d~~~l~s~s~Dg~v~vWd~~~~~~~~~~~~~~~~v~~~~~sp~g~~lasg~~d~~i~v~  133 (354)
T 2pbi_B           54 MKTRRTLKGHGNKVLCMDWCKDKRRIVSSSQDGKVIVWDSFTTNKEHAVTMPCTWVMACAYAPSGCAIACGGLDNKCSVY  133 (354)
T ss_dssp             CCEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECSSSCCCEEEECTTSSEEEEESTTSEEEEE
T ss_pred             cEEEEEecCCCCeEEEEEECCCCCEEEEEeCCCeEEEEECCCCCcceEEecCCCCEEEEEECCCCCEEEEeeCCCCEEEE
Confidence            34667889999999999999999999999999999999976532211000  000111  11111111   122389999


Q ss_pred             ecCCC------ccceecccCCcceEEEEEeCCCCEEEeecCCCeEEEEECCCCeeeeeeecCCCCeeeEEEcc--CCCEE
Q 042146           86 DVPTA------TSLKTLIGHTNYVFCINFNPQSNRIVSDTFNETIRIWDIKTGKCLKVLPAHSDPVTAIDFNR--DGTMI  157 (262)
Q Consensus        86 d~~~~------~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~--~~~~l  157 (262)
                      ++...      .....+..|...|.+++|+|++..|++++.|++|++||+++++++..+.+|...|.+++|+|  ++++|
T Consensus       134 ~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~t~s~D~~v~lwd~~~~~~~~~~~~h~~~v~~~~~~~~~~g~~l  213 (354)
T 2pbi_B          134 PLTFDKNENMAAKKKSVAMHTNYLSACSFTNSDMQILTASGDGTCALWDVESGQLLQSFHGHGADVLCLDLAPSETGNTF  213 (354)
T ss_dssp             ECCCCTTCCSGGGCEEEEECSSCEEEEEECSSSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECCCSSCCEE
T ss_pred             EEeccccccccccceeeeccCCcEEEEEEeCCCCEEEEEeCCCcEEEEeCCCCeEEEEEcCCCCCeEEEEEEeCCCCCEE
Confidence            98643      23455678999999999999999999999999999999999999999999999999999988  56899


Q ss_pred             EEEeCCCeEEEEeCCC--------------------CCccEEEEEcCCCeEEEEecCCCceeeEEeccCCceeEEEEEEe
Q 042146          158 VTSSYDGLYRILDAST--------------------PNGKFILVGTLDNTLRLWNYSTRKILKTYSGYTNSKYCISSTFS  217 (262)
Q Consensus       158 ~~~~~dg~i~~~d~~~--------------------~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~  217 (262)
                      ++|+.||.|++||+++                    |++++|++|+.|+.|++||++.++.+..+..+.           
T Consensus       214 ~sgs~Dg~v~~wd~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~D~~v~lwd~~~~~~~~~~~~~~-----------  282 (354)
T 2pbi_B          214 VSGGCDKKAMVWDMRSGQCVQAFETHESDVNSVRYYPSGDAFASGSDDATCRLYDLRADREVAIYSKES-----------  282 (354)
T ss_dssp             EEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCTT-----------
T ss_pred             EEEeCCCeEEEEECCCCcEEEEecCCCCCeEEEEEeCCCCEEEEEeCCCeEEEEECCCCcEEEEEcCCC-----------
Confidence            9999999999999876                    789999999999999999999887776665321           


Q ss_pred             cCCCeeEEccccceEEEEEcCCCCeEEEeeecCCCcEEEEeecc
Q 042146          218 VTNGKYIVSHRDPVISVASHPAKNIIASGALDNDRTMKIWTQEK  261 (262)
Q Consensus       218 ~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~d~d~~i~iw~~~~  261 (262)
                               +...+.+++|+|++.+|++++  .|+.|++||+.+
T Consensus       283 ---------~~~~~~~~~~s~~g~~l~~g~--~d~~i~vwd~~~  315 (354)
T 2pbi_B          283 ---------IIFGASSVDFSLSGRLLFAGY--NDYTINVWDVLK  315 (354)
T ss_dssp             ---------CCSCEEEEEECTTSSEEEEEE--TTSCEEEEETTT
T ss_pred             ---------cccceeEEEEeCCCCEEEEEE--CCCcEEEEECCC
Confidence                     345789999999999999999  899999999853

>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A

Probab=100.00  E-value=6e-38  Score=241.15  Aligned_cols=217  Identities=15%  Similarity=0.269  Sum_probs=174.1

Q ss_pred             ceecccCcCceEEEEEccCCCeEEEecCCCeEEEeecCCCCCCCCCCCCCCccccCCccccc-----------------c
Q 042146           16 TQTLNGHLRAVSYVKFSHDGRLLTSSSAEKTLLTYSLSSISNFDSTPPSPLQKFTGHEQGIS-----------------D   78 (262)
Q Consensus        16 ~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~-----------------~   78 (262)
                      +..+.+|.+.|++++|+|+|++||+|+.|++|++||++...      ......+.+|...|.                 .
T Consensus         2 ~~~~~~h~~~V~~~~~s~~g~~las~s~D~~v~iw~~~~~~------~~~~~~l~gH~~~V~~v~~s~~~~g~~l~s~s~   75 (297)
T 2pm7_B            2 VVIANAHNEMIHDAVMDYYGKRMATCSSDKTIKIFEVEGET------HKLIDTLTGHEGPVWRVDWAHPKFGTILASCSY   75 (297)
T ss_dssp             CEECCSCSSCEEEEEECTTSSEEEEEETTSCEEEEEBCSSC------BCCCEEECCCSSCEEEEEECCGGGCSEEEEEET
T ss_pred             ceeccCCcCceEEEEECCCCCEEEEEeCCCEEEEEecCCCC------cEEEEEEccccCCeEEEEecCCCcCCEEEEEcC
Confidence            35678999999999999999999999999999999986421      112223333333221                 2


Q ss_pred             ceeEEEEecCCCc--cceecccCCcceEEEEEeCC--CCEEEeecCCCeEEEEECCCCe--eeeeeecCCCCeeeEEEcc
Q 042146           79 LATIRLWDVPTAT--SLKTLIGHTNYVFCINFNPQ--SNRIVSDTFNETIRIWDIKTGK--CLKVLPAHSDPVTAIDFNR  152 (262)
Q Consensus        79 ~~~i~v~d~~~~~--~~~~~~~~~~~v~~~~~~~~--~~~l~~~~~dg~i~vwd~~~~~--~~~~~~~~~~~v~~~~~~~  152 (262)
                      .+.|++||+++++  .+..+..|...|.+++|+|+  +.+|++++.|+.|++||++++.  ....+.+|...|.+++|+|
T Consensus        76 D~~v~iWd~~~~~~~~~~~~~~h~~~v~~v~~~p~~~g~~l~s~s~d~~v~~wd~~~~~~~~~~~~~~h~~~v~~~~~~p  155 (297)
T 2pm7_B           76 DGKVMIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPMLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAP  155 (297)
T ss_dssp             TTEEEEEEBSSSCBCCCEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEEBCSSSCBCCEEEECCSSCEEEEEECC
T ss_pred             CCEEEEEEcCCCceEEEEEeecCCCceeEEEeCcCCCCcEEEEEECCCcEEEEEecCCCceeeeeeecccCccceEeecC
Confidence            2389999998774  55667789999999999997  8899999999999999998763  2456678999999999999


Q ss_pred             C-------------CCEEEEEeCCCeEEEEeCCC------------------------CC---ccEEEEEcCCCeEEEEe
Q 042146          153 D-------------GTMIVTSSYDGLYRILDAST------------------------PN---GKFILVGTLDNTLRLWN  192 (262)
Q Consensus       153 ~-------------~~~l~~~~~dg~i~~~d~~~------------------------~~---~~~l~~~~~dg~i~i~d  192 (262)
                      +             +++|++|+.|++|++||++.                        |+   +.+|++++.|+.|++||
T Consensus       156 ~~~~~~~~~~~~~~~~~l~sgs~D~~v~lwd~~~~~~~~~~~~~l~~H~~~V~~v~~sp~~~~~~~las~s~D~~v~iWd  235 (297)
T 2pm7_B          156 ATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYMASVSQDRTCIIWT  235 (297)
T ss_dssp             CC------------CCEEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSSEEEEEEETTSCEEEEE
T ss_pred             CcccccccCCCCCCcceEEEEcCCCcEEEEEEcCCCceEEEEEEecCCCCceEEEEECCCCCCceEEEEEECCCcEEEEE
Confidence            6             57999999999999999753                        55   48999999999999999


Q ss_pred             cCCCce--e-eEEeccCCceeEEEEEEecCCCeeEEccccceEEEEEcCCCCeEEEeeecCCCcEEEEeec
Q 042146          193 YSTRKI--L-KTYSGYTNSKYCISSTFSVTNGKYIVSHRDPVISVASHPAKNIIASGALDNDRTMKIWTQE  260 (262)
Q Consensus       193 ~~~~~~--~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~d~d~~i~iw~~~  260 (262)
                      +++...  . ..+...                    .|...|.+++|+|++++|++++  .|+.|++|+.+
T Consensus       236 ~~~~~~~~~~~~~~~~--------------------~~~~~v~~~~~s~~g~~las~~--~D~~v~lw~~~  284 (297)
T 2pm7_B          236 QDNEQGPWKKTLLKEE--------------------KFPDVLWRASWSLSGNVLALSG--GDNKVTLWKEN  284 (297)
T ss_dssp             ESSTTSCCEEEESSSS--------------------CCSSCEEEEEECSSSCCEEEEE--TTSCEEEEEEC
T ss_pred             eCCCCCccceeeeecc--------------------cCCCcEEEEEECCCCCEEEEEc--CCCcEEEEEEC
Confidence            986431  1 111100                    1778999999999999999999  89999999976

>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A

Probab=100.00  E-value=7.8e-38  Score=262.65  Aligned_cols=244  Identities=24%  Similarity=0.360  Sum_probs=192.3

Q ss_pred             CceeeecccccceecccCcCceEEEEEccCCC-eEEEecCCCeEEEeecCCCCCCCCCCCCCCccccCCcccccc-----
Q 042146            5 RSLESFRPYTLTQTLNGHLRAVSYVKFSHDGR-LLTSSSAEKTLLTYSLSSISNFDSTPPSPLQKFTGHEQGISD-----   78 (262)
Q Consensus         5 ~~i~~~~~~~~~~~~~~h~~~v~~~~~~~~~~-~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~-----   78 (262)
                      ++++.|+..+....+.+|.+.|++++|+|++. .|++|+.|++|++||....+        ....+.+|...+..     
T Consensus       129 ~~v~~wd~~~~~~~l~gh~~~v~~v~f~p~~~~~l~s~s~D~~v~lwd~~~~~--------~~~~l~~H~~~V~~v~fsp  200 (611)
T 1nr0_A          129 GHVFLFDTGTSNGNLTGQARAMNSVDFKPSRPFRIISGSDDNTVAIFEGPPFK--------FKSTFGEHTKFVHSVRYNP  200 (611)
T ss_dssp             EEEEETTTCCBCBCCCCCSSCEEEEEECSSSSCEEEEEETTSCEEEEETTTBE--------EEEEECCCSSCEEEEEECT
T ss_pred             eEEEEeeCCCCcceecCCCCCceEEEECCCCCeEEEEEeCCCeEEEEECCCCe--------EeeeeccccCceEEEEECC
Confidence            47888888888889999999999999999987 59999999999999875432        12233344433332     


Q ss_pred             ----------ceeEEEEecCCCccceecc-------cCCcceEEEEEeCCCCEEEeecCCCeEEEEECCCCeeee-----
Q 042146           79 ----------LATIRLWDVPTATSLKTLI-------GHTNYVFCINFNPQSNRIVSDTFNETIRIWDIKTGKCLK-----  136 (262)
Q Consensus        79 ----------~~~i~v~d~~~~~~~~~~~-------~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~-----  136 (262)
                                .+.|++||+.+++.+..+.       +|...|.+++|+|++++|++++.|++|++||+++++++.     
T Consensus       201 dg~~las~s~D~~i~lwd~~~g~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~l~s~s~D~~v~lWd~~~~~~~~~~~~~  280 (611)
T 1nr0_A          201 DGSLFASTGGDGTIVLYNGVDGTKTGVFEDDSLKNVAHSGSVFGLTWSPDGTKIASASADKTIKIWNVATLKVEKTIPVG  280 (611)
T ss_dssp             TSSEEEEEETTSCEEEEETTTCCEEEECBCTTSSSCSSSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECC
T ss_pred             CCCEEEEEECCCcEEEEECCCCcEeeeeccccccccccCCCEEEEEECCCCCEEEEEeCCCeEEEEeCCCCceeeeecCC
Confidence                      2389999999988877773       799999999999999999999999999999998776543     


Q ss_pred             --------------------------------------eeecCCCCeeeEEEccCCCEEEEEeCCCeEEEEeCCC-----
Q 042146          137 --------------------------------------VLPAHSDPVTAIDFNRDGTMIVTSSYDGLYRILDAST-----  173 (262)
Q Consensus       137 --------------------------------------~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~d~~~-----  173 (262)
                                                            .+.+|...|++++|+|++++|++++.|++|++||+..     
T Consensus       281 ~~~~~~~~~~~~~~~~l~s~s~d~~i~~~~~~~~~~~~~~~gh~~~v~~l~~spdg~~l~s~s~D~~v~~Wd~~~~~~~~  360 (611)
T 1nr0_A          281 TRIEDQQLGIIWTKQALVSISANGFINFVNPELGSIDQVRYGHNKAITALSSSADGKTLFSADAEGHINSWDISTGISNR  360 (611)
T ss_dssp             SSGGGCEEEEEECSSCEEEEETTCCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEE
T ss_pred             CCccceeEEEEEcCCEEEEEeCCCcEEEEeCCCCCcceEEcCCCCCEEEEEEeCCCCEEEEEeCCCcEEEEECCCCceee
Confidence                                                  3346889999999999999999999999999999642     


Q ss_pred             --------------------------------------------------------------------------------
Q 042146          174 --------------------------------------------------------------------------------  173 (262)
Q Consensus       174 --------------------------------------------------------------------------------  173 (262)
                                                                                                      
T Consensus       361 ~~~~~h~~~v~~~~~s~~~~l~s~s~d~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~~~~~~~v~~~~~~  440 (611)
T 1nr0_A          361 VFPDVHATMITGIKTTSKGDLFTVSWDDHLKVVPAGGSGVDSSKAVANKLSSQPLGLAVSADGDIAVAACYKHIAIYSHG  440 (611)
T ss_dssp             CSSCSCSSCEEEEEECTTSCEEEEETTTEEEEECSSSSSSCTTSCCEEECSSCEEEEEECTTSSCEEEEESSEEEEEETT
T ss_pred             ecccCCcceEEEEEECCCCcEEEEEcCCceEEeecCCccccccceeeeecCCCCcEEEEeCCCcEEEEEeCceEEEEeCC
Confidence                                                                                            


Q ss_pred             -----------------CCccEEEEEcCCCeEEEEecCCCce--eeEEeccCCceeEEEEEEecCCCeeE----------
Q 042146          174 -----------------PNGKFILVGTLDNTLRLWNYSTRKI--LKTYSGYTNSKYCISSTFSVTNGKYI----------  224 (262)
Q Consensus       174 -----------------~~~~~l~~~~~dg~i~i~d~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~----------  224 (262)
                                       |++++|++|+.|+.|++||+.+++.  +.. ..|...+.++.  |+++...++          
T Consensus       441 ~~~~~~~~~~v~~va~spdg~~lasgs~D~~v~lwd~~~~~~~~~~~-~~h~~~v~~v~--fspdg~~las~s~d~~v~~  517 (611)
T 1nr0_A          441 KLTEVPISYNSSCVALSNDKQFVAVGGQDSKVHVYKLSGASVSEVKT-IVHPAEITSVA--FSNNGAFLVATDQSRKVIP  517 (611)
T ss_dssp             EEEEEECSSCEEEEEECTTSCEEEEEETTSEEEEEEEETTEEEEEEE-EECSSCEEEEE--ECTTSSEEEEEETTSCEEE
T ss_pred             ceeeeecCCCceEEEEeCCCCEEEEeCCCCeEEEEEccCCceeeeec-cCCCCceEEEE--ECCCCCEEEEEcCCCCEEE
Confidence                             3467888899999999999876543  223 45555555443  333222111          


Q ss_pred             ---------------EccccceEEEEEcCCCCeEEEeeecCCCcEEEEeecc
Q 042146          225 ---------------VSHRDPVISVASHPAKNIIASGALDNDRTMKIWTQEK  261 (262)
Q Consensus       225 ---------------~~~~~~v~~~~~~p~~~~l~~~~~d~d~~i~iw~~~~  261 (262)
                                     .+|...|.+++|+|++++|++++  .|++|++|+++.
T Consensus       518 w~~~~~~~~~~~~~~~~H~~~V~~v~fspdg~~lasgs--~D~~v~lW~~~~  567 (611)
T 1nr0_A          518 YSVANNFELAHTNSWTFHTAKVACVSWSPDNVRLATGS--LDNSVIVWNMNK  567 (611)
T ss_dssp             EEGGGTTEESCCCCCCCCSSCEEEEEECTTSSEEEEEE--TTSCEEEEETTC
T ss_pred             EEcCCCCceeeeeeeeecccceeEEEECCCCCEEEEEE--CCCcEEEEECCC
Confidence                           12888999999999999999999  899999999864

>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1

Probab=100.00  E-value=1.6e-37  Score=247.73  Aligned_cols=204  Identities=29%  Similarity=0.532  Sum_probs=173.8

Q ss_pred             ceEEEEEccCCCeEEEecCCCeEEEeecCCCCCCCCCCCCCCccccCCcccccc---------------ceeEEEEecCC
Q 042146           25 AVSYVKFSHDGRLLTSSSAEKTLLTYSLSSISNFDSTPPSPLQKFTGHEQGISD---------------LATIRLWDVPT   89 (262)
Q Consensus        25 ~v~~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~---------------~~~i~v~d~~~   89 (262)
                      .|++++|+|++++|++|+.|++|++||+++...        ...+.+|...+..               .+.|++||+.+
T Consensus       125 ~v~~v~~s~dg~~l~s~~~d~~i~iwd~~~~~~--------~~~~~~h~~~v~~~~~~p~~~~l~s~s~d~~v~iwd~~~  196 (393)
T 1erj_A          125 YIRSVCFSPDGKFLATGAEDRLIRIWDIENRKI--------VMILQGHEQDIYSLDYFPSGDKLVSGSGDRTVRIWDLRT  196 (393)
T ss_dssp             BEEEEEECTTSSEEEEEETTSCEEEEETTTTEE--------EEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTT
T ss_pred             eEEEEEECCCCCEEEEEcCCCeEEEEECCCCcE--------EEEEccCCCCEEEEEEcCCCCEEEEecCCCcEEEEECCC
Confidence            499999999999999999999999999876432        2223333333322               23899999999


Q ss_pred             CccceecccCCcceEEEEEeC-CCCEEEeecCCCeEEEEECCCCeeeeee-------ecCCCCeeeEEEccCCCEEEEEe
Q 042146           90 ATSLKTLIGHTNYVFCINFNP-QSNRIVSDTFNETIRIWDIKTGKCLKVL-------PAHSDPVTAIDFNRDGTMIVTSS  161 (262)
Q Consensus        90 ~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~dg~i~vwd~~~~~~~~~~-------~~~~~~v~~~~~~~~~~~l~~~~  161 (262)
                      ++....+. +...+.+++|+| +++++++|+.||.|++||+++++.+..+       .+|...|.+++|+|++++|++++
T Consensus       197 ~~~~~~~~-~~~~v~~~~~~~~~~~~l~~~s~d~~v~iwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~g~~l~s~s  275 (393)
T 1erj_A          197 GQCSLTLS-IEDGVTTVAVSPGDGKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGS  275 (393)
T ss_dssp             TEEEEEEE-CSSCEEEEEECSTTCCEEEEEETTSCEEEEETTTCCEEEEEC------CCCSSCEEEEEECTTSSEEEEEE
T ss_pred             CeeEEEEE-cCCCcEEEEEECCCCCEEEEEcCCCcEEEEECCCCcEEEeecccccCCCCCCCCEEEEEECCCCCEEEEEe
Confidence            88777665 567799999999 8999999999999999999998877766       57889999999999999999999


Q ss_pred             CCCeEEEEeCCC--------------------------------CCccEEEEEcCCCeEEEEecCCCceeeEEeccCCce
Q 042146          162 YDGLYRILDAST--------------------------------PNGKFILVGTLDNTLRLWNYSTRKILKTYSGYTNSK  209 (262)
Q Consensus       162 ~dg~i~~~d~~~--------------------------------~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~  209 (262)
                      .|+.|++||++.                                +++.+|++|+.|+.|++||+++++++..+.+     
T Consensus       276 ~d~~v~~wd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~sgs~D~~v~iwd~~~~~~~~~l~~-----  350 (393)
T 1erj_A          276 LDRSVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQNDEYILSGSKDRGVLFWDKKSGNPLLMLQG-----  350 (393)
T ss_dssp             TTSEEEEEEC---------------CEEEEEECCSSCEEEEEECGGGCEEEEEETTSEEEEEETTTCCEEEEEEC-----
T ss_pred             CCCEEEEEECCCCCCcccccCCCCCcceEEEecccCcEEEEEECCCCCEEEEEeCCCeEEEEECCCCeEEEEECC-----
Confidence            999999999853                                5678999999999999999999999988887     


Q ss_pred             eEEEEEEecCCCeeEEccccceEEEEEcC------CCCeEEEeeecCCCcEEEEeecc
Q 042146          210 YCISSTFSVTNGKYIVSHRDPVISVASHP------AKNIIASGALDNDRTMKIWTQEK  261 (262)
Q Consensus       210 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~p------~~~~l~~~~~d~d~~i~iw~~~~  261 (262)
                                       |...|.+++|+|      ++++|++|+  .||+|+||++++
T Consensus       351 -----------------h~~~v~~v~~~~~~~~~p~~~~l~sgs--~Dg~i~iW~~~~  389 (393)
T 1erj_A          351 -----------------HRNSVISVAVANGSSLGPEYNVFATGS--GDCKARIWKYKK  389 (393)
T ss_dssp             -----------------CSSCEEEEEECSSCTTCTTCEEEEEEE--TTSEEEEEEEEE
T ss_pred             -----------------CCCCEEEEEecCCcCcCCCCCEEEEEC--CCCcEEECcccc
Confidence                             888899999876      688999999  899999999864

>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A

Probab=100.00  E-value=2.2e-37  Score=238.81  Aligned_cols=227  Identities=23%  Similarity=0.387  Sum_probs=188.2

Q ss_pred             CCCCceeeec--ccccceecccCcCceEEEEEccCCCeEEEecCCCeEEEeecCCCCCCCCCCCCCCccccCCccccccc
Q 042146            2 SSDRSLESFR--PYTLTQTLNGHLRAVSYVKFSHDGRLLTSSSAEKTLLTYSLSSISNFDSTPPSPLQKFTGHEQGISDL   79 (262)
Q Consensus         2 s~d~~i~~~~--~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~   79 (262)
                      +.|++++.|+  ....+..+..|..+|.+++|+|++++|++|+.|++|++||+....        ....+.+|...+..+
T Consensus        32 ~~dg~v~lWd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~s~d~~i~vwd~~~~~--------~~~~~~~h~~~v~~~  103 (304)
T 2ynn_A           32 LYSGRVELWNYETQVEVRSIQVTETPVRAGKFIARKNWIIVGSDDFRIRVFNYNTGE--------KVVDFEAHPDYIRSI  103 (304)
T ss_dssp             ETTSEEEEEETTTTEEEEEEECCSSCEEEEEEEGGGTEEEEEETTSEEEEEETTTCC--------EEEEEECCSSCEEEE
T ss_pred             cCCCcEEEEECCCCceeEEeeccCCcEEEEEEeCCCCEEEEECCCCEEEEEECCCCc--------EEEEEeCCCCcEEEE
Confidence            3688888886  456788899999999999999999999999999999999986532        223344444443332


Q ss_pred             ---------------eeEEEEecCCCc-cceecccCCcceEEEEEeC-CCCEEEeecCCCeEEEEECCCCeeeeeee-cC
Q 042146           80 ---------------ATIRLWDVPTAT-SLKTLIGHTNYVFCINFNP-QSNRIVSDTFNETIRIWDIKTGKCLKVLP-AH  141 (262)
Q Consensus        80 ---------------~~i~v~d~~~~~-~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~dg~i~vwd~~~~~~~~~~~-~~  141 (262)
                                     +.|++||++++. ....+.+|...|.+++|+| ++.+|++|+.|++|++||++++.+...+. .|
T Consensus       104 ~~~~~~~~l~sgs~D~~v~lWd~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~l~sgs~D~~v~iwd~~~~~~~~~~~~~~  183 (304)
T 2ynn_A          104 AVHPTKPYVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQ  183 (304)
T ss_dssp             EECSSSSEEEEEETTSCEEEEEGGGTTEEEEEECCCCSCEEEEEECTTCTTEEEEEETTSEEEEEETTCSSCSEEEECCC
T ss_pred             EEcCCCCEEEEECCCCeEEEEECCCCcchhhhhcccCCcEEEEEECCCCCCEEEEEeCCCeEEEEECCCCCccceeccCC
Confidence                           289999998774 4567889999999999999 67899999999999999998877655554 45


Q ss_pred             CCCeeeEEEcc--CCCEEEEEeCCCeEEEEeCCC--------------------CCccEEEEEcCCCeEEEEecCCCcee
Q 042146          142 SDPVTAIDFNR--DGTMIVTSSYDGLYRILDAST--------------------PNGKFILVGTLDNTLRLWNYSTRKIL  199 (262)
Q Consensus       142 ~~~v~~~~~~~--~~~~l~~~~~dg~i~~~d~~~--------------------~~~~~l~~~~~dg~i~i~d~~~~~~~  199 (262)
                      ...+..+.|+|  ++.+|++++.|++|++||++.                    |++++|++|+.||.|++||+++++++
T Consensus       184 ~~~v~~~~~~~~~~~~~l~s~s~D~~i~iWd~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~s~Dg~i~iWd~~~~~~~  263 (304)
T 2ynn_A          184 ERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVFHPTLPIIISGSEDGTLKIWNSSTYKVE  263 (304)
T ss_dssp             TTCEEEEEECCSTTCCEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEECSSSSEEEEEETTSCEEEEETTTCCEE
T ss_pred             cCcEEEEEEEEcCCCCEEEEEcCCCeEEEEeCCCCccceeeCCCCCCEEEEEECCCCCEEEEEcCCCeEEEEECCCCcee
Confidence            67899999987  678999999999999999886                    78899999999999999999999999


Q ss_pred             eEEeccCCceeEEEEEEecCCCeeEEccccceEEEEEcCCCC--eEEEeeecCCCcEEEEeecc
Q 042146          200 KTYSGYTNSKYCISSTFSVTNGKYIVSHRDPVISVASHPAKN--IIASGALDNDRTMKIWTQEK  261 (262)
Q Consensus       200 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~--~l~~~~~d~d~~i~iw~~~~  261 (262)
                      ..+..                      |...+.+++|+|++.  ++++|+   |..+.+|++.+
T Consensus       264 ~~~~~----------------------~~~~~~~~~~~~~~~~~~~asg~---~~g~~~~~~~~  302 (304)
T 2ynn_A          264 KTLNV----------------------GLERSWCIATHPTGRKNYIASGF---DNGFTVLSLGN  302 (304)
T ss_dssp             EEECC----------------------SSSSEEEEEECTTCGGGCEEEEE---TTEEEEEECC-
T ss_pred             eeccC----------------------CCccEEEEEECCCCCceEEEEec---CCceEEEEecc
Confidence            99887                      778999999999875  477775   45677887764

>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens}

Probab=100.00  E-value=5.2e-38  Score=246.41  Aligned_cols=239  Identities=18%  Similarity=0.334  Sum_probs=179.4

Q ss_pred             ccccceecccCcC-ceEEEEEccCCCeEEEecCCCeEEEeecCCCCCC-----CCCCCCCCccccCC--cccc---ccce
Q 042146           12 PYTLTQTLNGHLR-AVSYVKFSHDGRLLTSSSAEKTLLTYSLSSISNF-----DSTPPSPLQKFTGH--EQGI---SDLA   80 (262)
Q Consensus        12 ~~~~~~~~~~h~~-~v~~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~-----~~~~~~~~~~~~~~--~~~v---~~~~   80 (262)
                      .+++++++.+|.+ .|.+++|+|++++||+|+.|++|+|||++.....     .......+..+...  ...+   ...+
T Consensus         4 ~~~~~~~~~~h~~~~v~~l~~sp~g~~las~~~D~~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~s~D~   83 (345)
T 3fm0_A            4 SLVLLGRVPAHPDSRCWFLAWNPAGTLLASCGGDRRIRIWGTEGDSWICKSVLSEGHQRTVRKVAWSPCGNYLASASFDA   83 (345)
T ss_dssp             CEEEEEEECCSTTSCEEEEEECTTSSCEEEEETTSCEEEEEEETTEEEEEEEECSSCSSCEEEEEECTTSSEEEEEETTS
T ss_pred             cEEEeeeecCCCCCcEEEEEECCCCCEEEEEcCCCeEEEEEcCCCcceeeeeeccccCCcEEEEEECCCCCEEEEEECCC
Confidence            4567788999988 9999999999999999999999999998653210     00111111111111  1111   1123


Q ss_pred             eEEEEecCCCc--cceecccCCcceEEEEEeCCCCEEEeecCCCeEEEEECCCC---eeeeeeecCCCCeeeEEEccCCC
Q 042146           81 TIRLWDVPTAT--SLKTLIGHTNYVFCINFNPQSNRIVSDTFNETIRIWDIKTG---KCLKVLPAHSDPVTAIDFNRDGT  155 (262)
Q Consensus        81 ~i~v~d~~~~~--~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~---~~~~~~~~~~~~v~~~~~~~~~~  155 (262)
                      .+++|+...+.  .+..+.+|...|.+++|+|++++|++|+.|+.|++||++++   +++..+..|...|.+++|+|+++
T Consensus        84 ~v~iw~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~  163 (345)
T 3fm0_A           84 TTCIWKKNQDDFECVTTLEGHENEVKSVAWAPSGNLLATCSRDKSVWVWEVDEEDEYECVSVLNSHTQDVKHVVWHPSQE  163 (345)
T ss_dssp             CEEEEEECCC-EEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEEECTTSCEEEEEEECCCCSCEEEEEECSSSS
T ss_pred             cEEEEEccCCCeEEEEEccCCCCCceEEEEeCCCCEEEEEECCCeEEEEECCCCCCeEEEEEecCcCCCeEEEEECCCCC
Confidence            89999998764  56788899999999999999999999999999999999865   34667788999999999999999


Q ss_pred             EEEEEeCCCeEEEEeCCC----------------------CCccEEEEEcCCCeEEEEecCCCceeeEEecc--CCceeE
Q 042146          156 MIVTSSYDGLYRILDAST----------------------PNGKFILVGTLDNTLRLWNYSTRKILKTYSGY--TNSKYC  211 (262)
Q Consensus       156 ~l~~~~~dg~i~~~d~~~----------------------~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~--~~~~~~  211 (262)
                      +|++++.|+.|++||.+.                      |++++|++|+.|+.|++||.........+...  .....+
T Consensus       164 ~l~s~s~d~~i~~w~~~~~~~~~~~~~~~h~~~v~~l~~sp~g~~l~s~s~D~~v~iW~~~~~~~~~~~~~~~~~~~~~~  243 (345)
T 3fm0_A          164 LLASASYDDTVKLYREEEDDWVCCATLEGHESTVWSLAFDPSGQRLASCSDDRTVRIWRQYLPGNEQGVACSGSDPSWKC  243 (345)
T ss_dssp             CEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEEEECTTCTTCCCCC---CEEEE
T ss_pred             EEEEEeCCCcEEEEEecCCCEEEEEEecCCCCceEEEEECCCCCEEEEEeCCCeEEEeccccCCCCccceeeccCCccce
Confidence            999999999999999754                      78999999999999999997432211111000  000001


Q ss_pred             EEEEEecCCCeeEEccccceEEEEEcCCCCeEEEeeecCCCcEEEEeec
Q 042146          212 ISSTFSVTNGKYIVSHRDPVISVASHPAKNIIASGALDNDRTMKIWTQE  260 (262)
Q Consensus       212 ~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~d~d~~i~iw~~~  260 (262)
                      +..        +...|...|.+++|+|++..|++++  .|+.|++|+.+
T Consensus       244 ~~~--------~~~~h~~~v~~v~~~~~~~~l~s~~--~d~~i~vw~~~  282 (345)
T 3fm0_A          244 ICT--------LSGFHSRTIYDIAWCQLTGALATAC--GDDAIRVFQED  282 (345)
T ss_dssp             EEE--------ECSSCSSCEEEEEECTTTCCEEEEE--TTSCEEEEEEC
T ss_pred             eEE--------ecCCCCCcEEEEEEecCCCEEEEEe--CCCeEEEEEeC
Confidence            000        0011788999999999999999999  89999999875

>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}

Probab=100.00  E-value=1e-36  Score=254.29  Aligned_cols=250  Identities=30%  Similarity=0.478  Sum_probs=201.1

Q ss_pred             CCCCceeeec-ccccceecccCcCceEEEEEccCCCeEEEecCCCeEEEeecCCCCCCCCC-CCCCCccc--cCCcccc-
Q 042146            2 SSDRSLESFR-PYTLTQTLNGHLRAVSYVKFSHDGRLLTSSSAEKTLLTYSLSSISNFDST-PPSPLQKF--TGHEQGI-   76 (262)
Q Consensus         2 s~d~~i~~~~-~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~-~~~~~~~~--~~~~~~v-   76 (262)
                      +.|++++.|+ +.+....+.+|..+|.+++|+|++++|++++.|++|++||+......... ....+..+  ......+ 
T Consensus       281 ~~d~~i~~w~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~t~~~d~~i~~w~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~  360 (577)
T 2ymu_A          281 SDDKTVKLWNRNGQLLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNRNGQHLQTLTGHSSSVWGVAFSPDGQTIA  360 (577)
T ss_dssp             ETTSCEEEEETTSCEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTSCEEEEECCCSSCEEEEEECTTSSEEE
T ss_pred             eCCCEEEEEeCCCcEEEEEecCCCCeEEEEECCCCCEEEEEeCCCeEEEEeCCCCeeEEEeCCCCCEEEEEECCCCCEEE
Confidence            3578888886 45677888999999999999999999999999999999997653211100 01111111  1111111 


Q ss_pred             --ccceeEEEEecCCCccceecccCCcceEEEEEeCCCCEEEeecCCCeEEEEECCCCeeeeeeecCCCCeeeEEEccCC
Q 042146           77 --SDLATIRLWDVPTATSLKTLIGHTNYVFCINFNPQSNRIVSDTFNETIRIWDIKTGKCLKVLPAHSDPVTAIDFNRDG  154 (262)
Q Consensus        77 --~~~~~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~  154 (262)
                        ...+.+++||. +++.+..+.+|...|.+++|+|++++|++++.|+.|++||. +++.+..+.+|...|++++|+|++
T Consensus       361 ~~~~dg~v~~~~~-~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~~d~~v~~~~~-~~~~~~~~~~~~~~v~~~~~s~d~  438 (577)
T 2ymu_A          361 SASDDKTVKLWNR-NGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNR-NGQLLQTLTGHSSSVWGVAFSPDD  438 (577)
T ss_dssp             EEETTSEEEEEET-TCCEEEEEECCSSCEEEEEECTTSSCEEEEETTSEEEEECT-TCCEEEEEECCSSCEEEEEECTTS
T ss_pred             EEeCCCEEEEEcC-CCCEEEEecCCCCCeEEEEECCCCCEEEEEeCCCEEEEEeC-CCCEEEEecCCCCCeEEEEECCCC
Confidence              12237999995 56778888999999999999999999999999999999995 577888889999999999999999


Q ss_pred             CEEEEEeCCCeEEEEeCCC-------------------CCccEEEEEcCCCeEEEEecCCCceeeEEeccCCceeEEEEE
Q 042146          155 TMIVTSSYDGLYRILDAST-------------------PNGKFILVGTLDNTLRLWNYSTRKILKTYSGYTNSKYCISST  215 (262)
Q Consensus       155 ~~l~~~~~dg~i~~~d~~~-------------------~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~  215 (262)
                      ++|++++.|+.|++||...                   |++++|++++.|+.|++||. +++++..+.+|...+.++.+ 
T Consensus       439 ~~l~~~~~d~~v~~w~~~~~~~~~~~~~~~~v~~~~~spd~~~las~~~d~~i~iw~~-~~~~~~~~~~h~~~v~~l~~-  516 (577)
T 2ymu_A          439 QTIASASDDKTVKLWNRNGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNR-NGQLLQTLTGHSSSVRGVAF-  516 (577)
T ss_dssp             SEEEEEETTSEEEEEETTSCEEEEEECCSSCEEEEEECTTSCEEEEEETTSEEEEEET-TSCEEEEEECCSSCEEEEEE-
T ss_pred             CEEEEEcCCCEEEEEECCCCEEEEEcCCCCCEEEEEEcCCCCEEEEEeCCCEEEEEcC-CCCEEEEEeCCCCCEEEEEE-
Confidence            9999999999999999754                   89999999999999999995 68899999998887776543 


Q ss_pred             EecCCCee---------------------EEccccceEEEEEcCCCCeEEEeeecCCCcEEEEe
Q 042146          216 FSVTNGKY---------------------IVSHRDPVISVASHPAKNIIASGALDNDRTMKIWT  258 (262)
Q Consensus       216 ~~~~~~~~---------------------~~~~~~~v~~~~~~p~~~~l~~~~~d~d~~i~iw~  258 (262)
                       ++....+                     +.+|.++|++++|+|++++|++++  .|++|++||
T Consensus       517 -s~dg~~l~s~~~dg~v~lwd~~~~~~~~~~~h~~~v~~~~fs~dg~~l~s~~--~D~~i~~Wd  577 (577)
T 2ymu_A          517 -SPDGQTIASASDDKTVKLWNRNGQLLQTLTGHSSSVWGVAFSPDGQTIASAS--SDKTVKLWN  577 (577)
T ss_dssp             -CTTSSCEEEEETTSEEEEECTTSCEEEEEECCSSCEEEEEECTTSSCEEEEE--TTSCEEEEC
T ss_pred             -cCCCCEEEEEECcCEEEEEeCCCCEEEEEcCCCCCEEEEEEcCCCCEEEEEe--CCCEEEEeC
Confidence             3322222                     233899999999999999999999  899999997

>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}

Probab=100.00  E-value=1.1e-37  Score=247.54  Aligned_cols=232  Identities=19%  Similarity=0.359  Sum_probs=182.1

Q ss_pred             ccccceecccCcCceEEEEEccCCCeEEEecCCCeEEEeecCCCCCCCCCC--CCCC--ccccCCcccc---ccceeEEE
Q 042146           12 PYTLTQTLNGHLRAVSYVKFSHDGRLLTSSSAEKTLLTYSLSSISNFDSTP--PSPL--QKFTGHEQGI---SDLATIRL   84 (262)
Q Consensus        12 ~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~--~~~~--~~~~~~~~~v---~~~~~i~v   84 (262)
                      .....+++++|.++|++++|+|++++|++|+.||+|++||+..........  ...+  ..+......+   .....+++
T Consensus        55 ~~~~~~~l~gH~~~V~~~~~sp~~~~l~s~s~D~~v~iWd~~~~~~~~~~~~h~~~v~~~~~s~~g~~las~~~d~~v~i  134 (380)
T 3iz6_a           55 DLVCCRTLQGHSGKVYSLDWTPEKNWIVSASQDGRLIVWNALTSQKTHAIKLHCPWVMECAFAPNGQSVACGGLDSACSI  134 (380)
T ss_dssp             CCEEEEEECCCSSCEEEEEECTTSSCEEEEETTSEEEEEETTTTEEEEEEECCCTTCCCCEECTTSSEEEECCSSSCCEE
T ss_pred             eeEEeecccccccEEEEEEEcCCCCEEEEEeCCCeEEEEECCCCccceEEecCCCCEEEEEECCCCCEEEEeeCCCcEEE
Confidence            344667899999999999999999999999999999999986542211000  0000  1111111111   12238999


Q ss_pred             EecCCCc-------cceecccCCcceEEEEEeCC-CCEEEeecCCCeEEEEECCCCeeeeee-----ecCCCCeeeEEEc
Q 042146           85 WDVPTAT-------SLKTLIGHTNYVFCINFNPQ-SNRIVSDTFNETIRIWDIKTGKCLKVL-----PAHSDPVTAIDFN  151 (262)
Q Consensus        85 ~d~~~~~-------~~~~~~~~~~~v~~~~~~~~-~~~l~~~~~dg~i~vwd~~~~~~~~~~-----~~~~~~v~~~~~~  151 (262)
                      |++.+..       ....+.+|...|.++.|.|+ +..|++|+.|++|++||+++++.+..+     .+|...|.+++|+
T Consensus       135 w~~~~~~~~~~~~~~~~~~~gh~~~v~~~~~~~~~~~~l~s~s~D~~i~~wd~~~~~~~~~~~~~~~~~h~~~v~~~~~~  214 (380)
T 3iz6_a          135 FNLSSQADRDGNMPVSRVLTGHKGYASSCQYVPDQETRLITGSGDQTCVLWDVTTGQRISIFGSEFPSGHTADVLSLSIN  214 (380)
T ss_dssp             EECCCCSSCCCSSTTCCBCCCCSSCCCCCBCCSSSSSCEEEECTTSCEEEECTTTCCEEEEECCCSSSSCCSCEEEEEEC
T ss_pred             EECCCCccccCCccceeeccCCCcceEEEEEecCCCCEEEEECCCCcEEEEEcCCCcEEEEeecccCCCCccCeEEEEee
Confidence            9986532       34567889999999999996 567999999999999999999888776     5788999999998


Q ss_pred             c-CCCEEEEEeCCCeEEEEeCCC---------------------CCccEEEEEcCCCeEEEEecCCCceeeEEeccCCce
Q 042146          152 R-DGTMIVTSSYDGLYRILDAST---------------------PNGKFILVGTLDNTLRLWNYSTRKILKTYSGYTNSK  209 (262)
Q Consensus       152 ~-~~~~l~~~~~dg~i~~~d~~~---------------------~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~  209 (262)
                      | ++++|++|+.|++|++||++.                     |++++|++|+.||.|++||+++++++..+..+....
T Consensus       215 ~~~~~~l~sgs~D~~v~~wd~~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~D~~i~lwd~~~~~~~~~~~~~~~~~  294 (380)
T 3iz6_a          215 SLNANMFISGSCDTTVRLWDLRITSRAVRTYHGHEGDINSVKFFPDGQRFGTGSDDGTCRLFDMRTGHQLQVYNREPDRN  294 (380)
T ss_dssp             SSSCCEEEEEETTSCEEEEETTTTCCCCEEECCCSSCCCEEEECTTSSEEEEECSSSCEEEEETTTTEEEEEECCCCSSS
T ss_pred             cCCCCEEEEEECCCeEEEEECCCCCcceEEECCcCCCeEEEEEecCCCeEEEEcCCCeEEEEECCCCcEEEEeccccccc
Confidence            7 889999999999999999873                     789999999999999999999999888876532210


Q ss_pred             eEEEEEEecCCCeeEEccccceEEEEEcCCCCeEEEeeecCCCcEEEEeec
Q 042146          210 YCISSTFSVTNGKYIVSHRDPVISVASHPAKNIIASGALDNDRTMKIWTQE  260 (262)
Q Consensus       210 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~d~d~~i~iw~~~  260 (262)
                      .               .+...|++++|+|++++|++|+  .||.|++||+.
T Consensus       295 ~---------------~~~~~v~~~~~s~~g~~l~~g~--~dg~i~vwd~~  328 (380)
T 3iz6_a          295 D---------------NELPIVTSVAFSISGRLLFAGY--SNGDCYVWDTL  328 (380)
T ss_dssp             C---------------CSSCSCSEEEECSSSSEEEEEC--TTSCEEEEETT
T ss_pred             c---------------cccCceEEEEECCCCCEEEEEE--CCCCEEEEECC
Confidence            0               0334589999999999999999  89999999974

>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae}

Probab=100.00  E-value=5.2e-37  Score=239.30  Aligned_cols=224  Identities=21%  Similarity=0.314  Sum_probs=167.3

Q ss_pred             cccccceecccCcCceEEEEEccCCCeEEEecCCCeEEEeecCCCCC--CC---CC-CCCCCccccC--Ccccc---ccc
Q 042146           11 RPYTLTQTLNGHLRAVSYVKFSHDGRLLTSSSAEKTLLTYSLSSISN--FD---ST-PPSPLQKFTG--HEQGI---SDL   79 (262)
Q Consensus        11 ~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~--~~---~~-~~~~~~~~~~--~~~~v---~~~   79 (262)
                      .+.++++.+++|.++|.+++|+|+  +|++|+.|++|++||+.....  ..   .. ....+..+..  ....+   ...
T Consensus         2 ~~~~~~~~~~~h~~~v~~~~~s~~--~las~~~D~~i~lw~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~~las~s~D   79 (330)
T 2hes_X            2 ASINLIKSLKLYKEKIWSFDFSQG--ILATGSTDRKIKLVSVKYDDFTLIDVLDETAHKKAIRSVAWRPHTSLLAAGSFD   79 (330)
T ss_dssp             -CCEEEEEEECCSSCEEEEEEETT--EEEEEESSSCEEEEECSSSCCEEEEEECTTCCCSCEEEEEECTTSSEEEEEETT
T ss_pred             cccccceeeccCCCceeeeccCCC--EEEEEcCCCEEEEEEecCCCeEEEEEEecCCccCCEEEEEECCCCCEEEEEeCC
Confidence            345677889999999999999998  999999999999999875311  00   00 1111111111  11111   122


Q ss_pred             eeEEEEecCC-------CccceecccCCcceEEEEEeCCCCEEEeecCCCeEEEEECCC----CeeeeeeecCCCCeeeE
Q 042146           80 ATIRLWDVPT-------ATSLKTLIGHTNYVFCINFNPQSNRIVSDTFNETIRIWDIKT----GKCLKVLPAHSDPVTAI  148 (262)
Q Consensus        80 ~~i~v~d~~~-------~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~----~~~~~~~~~~~~~v~~~  148 (262)
                      +.|++||++.       .+.+..+.+|...|.+++|+|++++|++|+.|++|++||++.    .+++..+.+|...|.++
T Consensus        80 ~~v~iw~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~sp~g~~las~s~D~~v~iwd~~~~~~~~~~~~~~~~h~~~v~~v  159 (330)
T 2hes_X           80 STVSIWAKEESADRTFEMDLLAIIEGHENEVKGVAWSNDGYYLATCSRDKSVWIWETDESGEEYECISVLQEHSQDVKHV  159 (330)
T ss_dssp             SCEEEEEC-------CCCEEEEEEC----CEEEEEECTTSCEEEEEETTSCEEEEECCTTCCCCEEEEEECCCSSCEEEE
T ss_pred             CcEEEEEcccCcCccccceeEEEEcCCCCcEEEEEECCCCCEEEEEeCCCEEEEEeccCCCCCeEEEEEeccCCCceEEE
Confidence            3899999853       345567889999999999999999999999999999999943    25677788999999999


Q ss_pred             EEccCCCEEEEEeCCCeEEEEeCCC----------------------CC--ccEEEEEcCCCeEEEEecCCCc-------
Q 042146          149 DFNRDGTMIVTSSYDGLYRILDAST----------------------PN--GKFILVGTLDNTLRLWNYSTRK-------  197 (262)
Q Consensus       149 ~~~~~~~~l~~~~~dg~i~~~d~~~----------------------~~--~~~l~~~~~dg~i~i~d~~~~~-------  197 (262)
                      +|+|++.+|++++.|++|++||.+.                      ++  +.+|++|+.|+.|++||++.+.       
T Consensus       160 ~~~p~~~~l~s~s~D~~i~iW~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~D~~v~iw~~~~~~~~~~~~~  239 (330)
T 2hes_X          160 IWHPSEALLASSSYDDTVRIWKDYDDDWECVAVLNGHEGTVWSSDFDKTEGVFRLCSGSDDSTVRVWKYMGDDEDDQQEW  239 (330)
T ss_dssp             EECSSSSEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCSSSSCEEEEEETTSCEEEEEEEEECTTSCEEE
T ss_pred             EECCCCCEEEEEcCCCeEEEEECCCCCeeEEEEccCCCCcEEEEEecCCCCeeEEEEEeCCCeEEEEEecCCCcccccee
Confidence            9999999999999999999998643                      44  5689999999999999987542       


Q ss_pred             -eeeEEeccCCceeEEEEEEecCCCeeEEccccceEEEEEcCCCCeEEEeeecCCCcEEEEeec
Q 042146          198 -ILKTYSGYTNSKYCISSTFSVTNGKYIVSHRDPVISVASHPAKNIIASGALDNDRTMKIWTQE  260 (262)
Q Consensus       198 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~d~d~~i~iw~~~  260 (262)
                       +...+..                     .|...|.+++|+|++ +|++++  .||.|++|+..
T Consensus       240 ~~~~~~~~---------------------~h~~~v~~v~~s~~~-~l~s~~--~dg~v~iw~~~  279 (330)
T 2hes_X          240 VCEAILPD---------------------VHKRQVYNVAWGFNG-LIASVG--ADGVLAVYEEV  279 (330)
T ss_dssp             EEEEECCS---------------------CCSSCEEEEEECTTS-CEEEEE--TTSCEEEEEEE
T ss_pred             EEeeeccc---------------------ccccceEEEEEcCCC-EEEEEe--CCCEEEEEEcC
Confidence             1111111                     178899999999765 789999  89999999975

>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A

Probab=100.00  E-value=8.4e-38  Score=242.36  Aligned_cols=214  Identities=16%  Similarity=0.251  Sum_probs=166.1

Q ss_pred             eecccCcCceEEEEEccCCCeEEEecCCCeEEEeecCCCCCCCCCCCCCCccccCCcccc-----------------ccc
Q 042146           17 QTLNGHLRAVSYVKFSHDGRLLTSSSAEKTLLTYSLSSISNFDSTPPSPLQKFTGHEQGI-----------------SDL   79 (262)
Q Consensus        17 ~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v-----------------~~~   79 (262)
                      ..+.+|.++|++++|+|++++||+|+.|++|++||+.....      .....+.+|...|                 ...
T Consensus         7 ~~~~~H~~~V~~v~~s~~g~~lasgs~D~~v~lwd~~~~~~------~~~~~l~gH~~~V~~v~~~~~~~~~~l~s~s~D   80 (316)
T 3bg1_A            7 TVDTSHEDMIHDAQMDYYGTRLATCSSDRSVKIFDVRNGGQ------ILIADLRGHEGPVWQVAWAHPMYGNILASCSYD   80 (316)
T ss_dssp             -------CCEEEEEECGGGCEEEEEETTTEEEEEEEETTEE------EEEEEEECCSSCEEEEEECCGGGSSCEEEEETT
T ss_pred             eecccccCeEEEeeEcCCCCEEEEEeCCCeEEEEEecCCCc------EEEEEEcCCCccEEEEEeCCCCCCCEEEEEECC
Confidence            45679999999999999999999999999999999865321      0111222222222                 123


Q ss_pred             eeEEEEecCCCc--cceecccCCcceEEEEEeCC--CCEEEeecCCCeEEEEECCCCe---eeeeeecCCCCeeeEEEcc
Q 042146           80 ATIRLWDVPTAT--SLKTLIGHTNYVFCINFNPQ--SNRIVSDTFNETIRIWDIKTGK---CLKVLPAHSDPVTAIDFNR  152 (262)
Q Consensus        80 ~~i~v~d~~~~~--~~~~~~~~~~~v~~~~~~~~--~~~l~~~~~dg~i~vwd~~~~~---~~~~~~~~~~~v~~~~~~~  152 (262)
                      +.|++||+++++  ....+.+|...|.+++|+|+  +.+|++|+.|+.|++||++.+.   ....+..|...+.+++|+|
T Consensus        81 ~~v~iWd~~~~~~~~~~~~~~h~~~V~~v~~~p~~~g~~lasgs~D~~i~lwd~~~~~~~~~~~~~~~h~~~v~~~~~~~  160 (316)
T 3bg1_A           81 RKVIIWREENGTWEKSHEHAGHDSSVNSVCWAPHDYGLILACGSSDGAISLLTYTGEGQWEVKKINNAHTIGCNAVSWAP  160 (316)
T ss_dssp             SCEEEECCSSSCCCEEEEECCCSSCCCEEEECCTTTCSCEEEECSSSCEEEEEECSSSCEEECCBTTSSSSCBCCCEECC
T ss_pred             CEEEEEECCCCcceEEEEccCCCCceEEEEECCCCCCcEEEEEcCCCCEEEEecCCCCCcceeeeeccccCCcceEEEcc
Confidence            389999998874  45667889999999999997  7899999999999999998753   2345678999999999999


Q ss_pred             C-----------------CCEEEEEeCCCeEEEEeCCC-----------------------CCc----cEEEEEcCCCeE
Q 042146          153 D-----------------GTMIVTSSYDGLYRILDAST-----------------------PNG----KFILVGTLDNTL  188 (262)
Q Consensus       153 ~-----------------~~~l~~~~~dg~i~~~d~~~-----------------------~~~----~~l~~~~~dg~i  188 (262)
                      +                 +++|++|+.|++|++||++.                       |++    .+|++|+.||.|
T Consensus       161 ~~~~~~~~~~~~~~~~~~~~~l~sgs~D~~v~lWd~~~~~~~~~~~~l~~h~~~V~~v~~sp~~~~~~~~las~s~D~~v  240 (316)
T 3bg1_A          161 AVVPGSLIDHPSGQKPNYIKRFASGGCDNLIKLWKEEEDGQWKEEQKLEAHSDWVRDVAWAPSIGLPTSTIASCSQDGRV  240 (316)
T ss_dssp             CCCC------CCSCCCCCCCBEECCBTTSBCCEEEECTTSCEEEEECCBCCSSCEEEEECCCCSSCSCCEEEEEETTCEE
T ss_pred             ccCCccccccccccCccccceEEEecCCCeEEEEEeCCCCccceeeecccCCCceEEEEecCCCCCCCceEEEEcCCCeE
Confidence            7                 46899999999999999752                       444    789999999999


Q ss_pred             EEEecCCCc----eeeEEeccCCceeEEEEEEecCCCeeEEccccceEEEEEcCCCCeEEEeeecCCCcEEEEeec
Q 042146          189 RLWNYSTRK----ILKTYSGYTNSKYCISSTFSVTNGKYIVSHRDPVISVASHPAKNIIASGALDNDRTMKIWTQE  260 (262)
Q Consensus       189 ~i~d~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~d~d~~i~iw~~~  260 (262)
                      ++|++++..    ....+..                      |...|.+++|+|++++|++++  .|+.|++|+..
T Consensus       241 ~iw~~~~~~~~~~~~~~~~~----------------------~~~~v~~v~~sp~g~~las~~--~D~~v~lw~~~  292 (316)
T 3bg1_A          241 FIWTCDDASSNTWSPKLLHK----------------------FNDVVWHVSWSITANILAVSG--GDNKVTLWKES  292 (316)
T ss_dssp             EEEECSSTTCCCCBCCEEEE----------------------CSSCEEEEEECTTTCCEEEEE--SSSCEEEEEEC
T ss_pred             EEEEccCccccchhhhhhhc----------------------CCCcEEEEEEcCCCCEEEEEc--CCCeEEEEEEC
Confidence            999987632    1122222                      788999999999999999999  89999999975

>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A

Probab=100.00  E-value=7.9e-36  Score=239.98  Aligned_cols=226  Identities=23%  Similarity=0.402  Sum_probs=185.1

Q ss_pred             CCCceeeec--ccccceec--ccCcCceEEEEEccCCCeEEEecCCCeEEEeecCCCCCCCCCCCCCCccccCCcccccc
Q 042146            3 SDRSLESFR--PYTLTQTL--NGHLRAVSYVKFSHDGRLLTSSSAEKTLLTYSLSSISNFDSTPPSPLQKFTGHEQGISD   78 (262)
Q Consensus         3 ~d~~i~~~~--~~~~~~~~--~~h~~~v~~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~   78 (262)
                      .|++|+.|+  +.+..+.+  .+|...|++++|+|+|++||+|+.||+|++||++....        +..+.+|...+..
T Consensus       123 ld~tV~lWd~~tg~~~~~~~~~~~~~~V~sv~fspdg~~lasgs~Dg~v~iWd~~~~~~--------~~~~~~h~~~v~~  194 (420)
T 4gga_A          123 LDNSVYLWSASSGDILQLLQMEQPGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQQQKR--------LRNMTSHSARVGS  194 (420)
T ss_dssp             ETTEEEEEETTTCCEEEEEECCSTTCCEEEEEECTTSSEEEEEETTSCEEEEETTTTEE--------EEEECCCSSCEEE
T ss_pred             eCCEEEEEECCCCCEEEEEEecCCCCcEEEEEECCCCCEEEEEECCCeEEEEEcCCCcE--------EEEEeCCCCceEE
Confidence            378888886  44455544  57888999999999999999999999999999876432        2233333333322


Q ss_pred             c-------------eeEEEEecCCCc-cceecccCCcceEEEEEeCCCCEEEeecCCCeEEEEECCCCe----eeeeeec
Q 042146           79 L-------------ATIRLWDVPTAT-SLKTLIGHTNYVFCINFNPQSNRIVSDTFNETIRIWDIKTGK----CLKVLPA  140 (262)
Q Consensus        79 ~-------------~~i~v~d~~~~~-~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~----~~~~~~~  140 (262)
                      +             ..+++||..... .+..+.+|...+..+.++|+++++++++.|+.|++|+..+++    .+.....
T Consensus       195 ~s~~~~~l~sgs~d~~i~~~d~~~~~~~~~~~~~h~~~~~~~~~~~~g~~l~s~~~D~~v~i~~~~~~~~~~~~~~~~~~  274 (420)
T 4gga_A          195 LSWNSYILSSGSRSGHIHHHDVRVAEHHVATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQ  274 (420)
T ss_dssp             EEEETTEEEEEETTSEEEEEETTSSSCEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEESSCCSSCSCCSEEECC
T ss_pred             EeeCCCEEEEEeCCCceeEeeecccceeeEEecccccceeeeeecCCCCeeeeeeccccceEEeeccccccceeeeeecc
Confidence            2             289999987644 456788999999999999999999999999999999998764    3456677


Q ss_pred             CCCCeeeEEEccCCC-EEEE--EeCCCeEEEEeCCC-------------------CCccEEEEEc--CCCeEEEEecCCC
Q 042146          141 HSDPVTAIDFNRDGT-MIVT--SSYDGLYRILDAST-------------------PNGKFILVGT--LDNTLRLWNYSTR  196 (262)
Q Consensus       141 ~~~~v~~~~~~~~~~-~l~~--~~~dg~i~~~d~~~-------------------~~~~~l~~~~--~dg~i~i~d~~~~  196 (262)
                      |...|.+++|+|.+. .+++  |+.|++|++||+++                   ++++.+++++  .|+.|+|||++++
T Consensus       275 ~~~~V~~~~~~p~~~~~la~~~gs~D~~I~iwd~~t~~~~~~~~~~~~v~~~~~~~~~~~lv~~sg~~d~~I~iwd~~~~  354 (420)
T 4gga_A          275 HQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLSAVDAHSQVCSILWSPHYKELISGHGFAQNQLVIWKYPTM  354 (420)
T ss_dssp             CSSCEEEEEECTTCTTEEEEEECTTTCEEEEEETTTTEEEEEEECSSCEEEEEEETTTTEEEEEECTTTCCEEEEETTTC
T ss_pred             cCCceeeeeeCCCcccEEEEEeecCCCEEEEEeCCccccceeeccccceeeeeecCCCCeEEEEEecCCCEEEEEECCCC
Confidence            899999999999654 5555  35799999999987                   6777777654  7899999999999


Q ss_pred             ceeeEEeccCCceeEEEEEEecCCCeeEEccccceEEEEEcCCCCeEEEeeecCCCcEEEEeec
Q 042146          197 KILKTYSGYTNSKYCISSTFSVTNGKYIVSHRDPVISVASHPAKNIIASGALDNDRTMKIWTQE  260 (262)
Q Consensus       197 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~d~d~~i~iw~~~  260 (262)
                      +++..+.+                      |.+.|++++|+|++++|+||+  .|++|+|||+.
T Consensus       355 ~~v~~l~g----------------------H~~~V~~l~~spdg~~l~S~s--~D~tvriWdv~  394 (420)
T 4gga_A          355 AKVAELKG----------------------HTSRVLSLTMSPDGATVASAA--ADETLRLWRCF  394 (420)
T ss_dssp             CEEEEECC----------------------CSSCEEEEEECTTSSCEEEEE--TTTEEEEECCS
T ss_pred             cEEEEEcC----------------------CCCCEEEEEEcCCCCEEEEEe--cCCeEEEEECC
Confidence            99999987                      899999999999999999999  89999999985

>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A

Probab=100.00  E-value=3e-35  Score=229.38  Aligned_cols=225  Identities=16%  Similarity=0.301  Sum_probs=188.7

Q ss_pred             CCceeeecccc-----cceecc--cCcCceEEEEEccCCCeEEEecCCCeEEEeecCCCCCCCCCCCCCCccccCCcccc
Q 042146            4 DRSLESFRPYT-----LTQTLN--GHLRAVSYVKFSHDGRLLTSSSAEKTLLTYSLSSISNFDSTPPSPLQKFTGHEQGI   76 (262)
Q Consensus         4 d~~i~~~~~~~-----~~~~~~--~h~~~v~~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v   76 (262)
                      |+.+..|+...     ....+.  +|..+|.+++|+|++++|++++.|+.|++||+......      ....+..+...+
T Consensus        71 dg~i~iw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~------~~~~~~~~~~~i  144 (337)
T 1gxr_A           71 KGCVKVWDISHPGNKSPVSQLDCLNRDNYIRSCKLLPDGCTLIVGGEASTLSIWDLAAPTPR------IKAELTSSAPAC  144 (337)
T ss_dssp             BSEEEEEETTSTTCCSCSEEEECSCTTSBEEEEEECTTSSEEEEEESSSEEEEEECCCC--E------EEEEEECSSSCE
T ss_pred             CCeEEEEECCCCCceeeeecccccCCCCcEEEEEEcCCCCEEEEEcCCCcEEEEECCCCCcc------eeeecccCCCce
Confidence            78888886322     233333  79999999999999999999999999999998764310      111111121111


Q ss_pred             ---------------ccceeEEEEecCCCccceecccCCcceEEEEEeCCCCEEEeecCCCeEEEEECCCCeeeeeeecC
Q 042146           77 ---------------SDLATIRLWDVPTATSLKTLIGHTNYVFCINFNPQSNRIVSDTFNETIRIWDIKTGKCLKVLPAH  141 (262)
Q Consensus        77 ---------------~~~~~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~  141 (262)
                                     ...+.|++||+++++.+..+..|...|.+++|+|+++++++++.||.|++||+++++.+..+. +
T Consensus       145 ~~~~~~~~~~~l~~~~~dg~v~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~-~  223 (337)
T 1gxr_A          145 YALAISPDSKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDISNDGTKLWTGGLDNTVRSWDLREGRQLQQHD-F  223 (337)
T ss_dssp             EEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEE-C
T ss_pred             EEEEECCCCCEEEEEeCCCcEEEEeCCCCceeeeeecccCceEEEEECCCCCEEEEEecCCcEEEEECCCCceEeeec-C
Confidence                           112389999999999999999999999999999999999999999999999999998888774 7


Q ss_pred             CCCeeeEEEccCCCEEEEEeCCCeEEEEeCCC-------------------CCccEEEEEcCCCeEEEEecCCCceeeEE
Q 042146          142 SDPVTAIDFNRDGTMIVTSSYDGLYRILDAST-------------------PNGKFILVGTLDNTLRLWNYSTRKILKTY  202 (262)
Q Consensus       142 ~~~v~~~~~~~~~~~l~~~~~dg~i~~~d~~~-------------------~~~~~l~~~~~dg~i~i~d~~~~~~~~~~  202 (262)
                      ..++.+++|+|++++|++++.++.|++||++.                   +++++|++++.||.|++||+++++.+...
T Consensus       224 ~~~v~~~~~s~~~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~~~~~~~~~~~~  303 (337)
T 1gxr_A          224 TSQIFSLGYCPTGEWLAVGMESSNVEVLHVNKPDKYQLHLHESCVLSLKFAYCGKWFVSTGKDNLLNAWRTPYGASIFQS  303 (337)
T ss_dssp             SSCEEEEEECTTSSEEEEEETTSCEEEEETTSSCEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEE
T ss_pred             CCceEEEEECCCCCEEEEEcCCCcEEEEECCCCCeEEEcCCccceeEEEECCCCCEEEEecCCCcEEEEECCCCeEEEEe
Confidence            88999999999999999999999999999876                   78999999999999999999998887554


Q ss_pred             eccCCceeEEEEEEecCCCeeEEccccceEEEEEcCCCCeEEEeeecCCCcEEEEeec
Q 042146          203 SGYTNSKYCISSTFSVTNGKYIVSHRDPVISVASHPAKNIIASGALDNDRTMKIWTQE  260 (262)
Q Consensus       203 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~d~d~~i~iw~~~  260 (262)
                      .                       |...|.+++|+|++++|++++  .||.|++|++.
T Consensus       304 ~-----------------------~~~~v~~~~~s~~~~~l~~~~--~dg~i~iw~~~  336 (337)
T 1gxr_A          304 K-----------------------ESSSVLSCDISVDDKYIVTGS--GDKKATVYEVI  336 (337)
T ss_dssp             E-----------------------CSSCEEEEEECTTSCEEEEEE--TTSCEEEEEEE
T ss_pred             c-----------------------CCCcEEEEEECCCCCEEEEec--CCCeEEEEEEe
Confidence            3                       788999999999999999999  89999999973

>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli}

Probab=100.00  E-value=4.8e-36  Score=255.35  Aligned_cols=246  Identities=21%  Similarity=0.419  Sum_probs=186.7

Q ss_pred             CCCCceeeeccc-------ccceecccCcCceEEEEEccCCCeEEEecCCCeEEEeecCCCCCCCCCCCCCCccccCCcc
Q 042146            2 SSDRSLESFRPY-------TLTQTLNGHLRAVSYVKFSHDGRLLTSSSAEKTLLTYSLSSISNFDSTPPSPLQKFTGHEQ   74 (262)
Q Consensus         2 s~d~~i~~~~~~-------~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~   74 (262)
                      +.|++|+.|+..       ...+.+.+|...|.+++|+|++++|++|+.||+|++||+.....        ...+.+|..
T Consensus       402 s~D~~i~~W~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~~g~~l~sgs~Dg~v~vwd~~~~~~--------~~~~~~h~~  473 (694)
T 3dm0_A          402 SRDKSIILWKLTKDDKAYGVAQRRLTGHSHFVEDVVLSSDGQFALSGSWDGELRLWDLAAGVS--------TRRFVGHTK  473 (694)
T ss_dssp             ETTSEEEEEECCCSTTCSCEEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEE--------EEEEECCSS
T ss_pred             eCCCcEEEEEccCCCcccccccceecCCCCcEEEEEECCCCCEEEEEeCCCcEEEEECCCCcc--------eeEEeCCCC
Confidence            468999999632       24567889999999999999999999999999999999865322        223334443


Q ss_pred             ccccc---------------eeEEEEecCCCccce---ecccCCcceEEEEEeCCC--CEEEeecCCCeEEEEECCCCee
Q 042146           75 GISDL---------------ATIRLWDVPTATSLK---TLIGHTNYVFCINFNPQS--NRIVSDTFNETIRIWDIKTGKC  134 (262)
Q Consensus        75 ~v~~~---------------~~i~v~d~~~~~~~~---~~~~~~~~v~~~~~~~~~--~~l~~~~~dg~i~vwd~~~~~~  134 (262)
                      .+..+               +.|++||........   ...+|...|.+++|+|++  ..+++++.|+.|++||+++++.
T Consensus       474 ~v~~~~~s~~~~~l~s~s~D~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~d~~v~vwd~~~~~~  553 (694)
T 3dm0_A          474 DVLSVAFSLDNRQIVSASRDRTIKLWNTLGECKYTISEGGEGHRDWVSCVRFSPNTLQPTIVSASWDKTVKVWNLSNCKL  553 (694)
T ss_dssp             CEEEEEECTTSSCEEEEETTSCEEEECTTSCEEEEECSSTTSCSSCEEEEEECSCSSSCEEEEEETTSCEEEEETTTCCE
T ss_pred             CEEEEEEeCCCCEEEEEeCCCEEEEEECCCCcceeeccCCCCCCCcEEEEEEeCCCCcceEEEEeCCCeEEEEECCCCcE
Confidence            33322               289999986543322   224688999999999976  6899999999999999999999


Q ss_pred             eeeeecCCCCeeeEEEccCCCEEEEEeCCCeEEEEeCCC-------------------CCccEEEEEcCCCeEEEEecCC
Q 042146          135 LKVLPAHSDPVTAIDFNRDGTMIVTSSYDGLYRILDAST-------------------PNGKFILVGTLDNTLRLWNYST  195 (262)
Q Consensus       135 ~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~d~~~-------------------~~~~~l~~~~~dg~i~i~d~~~  195 (262)
                      ...+.+|.+.|++++|+|++++|++++.||.|++||+++                   |++.++++++ ++.|++||+++
T Consensus       554 ~~~~~~h~~~v~~v~~spdg~~l~sg~~Dg~i~iwd~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~-~~~i~iwd~~~  632 (694)
T 3dm0_A          554 RSTLAGHTGYVSTVAVSPDGSLCASGGKDGVVLLWDLAEGKKLYSLEANSVIHALCFSPNRYWLCAAT-EHGIKIWDLES  632 (694)
T ss_dssp             EEEECCCSSCEEEEEECTTSSEEEEEETTSBCEEEETTTTEEEECCBCSSCEEEEEECSSSSEEEEEE-TTEEEEEETTT
T ss_pred             EEEEcCCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCceEEEecCCCcEEEEEEcCCCcEEEEEc-CCCEEEEECCC
Confidence            999999999999999999999999999999999999876                   6666666655 56799999999


Q ss_pred             CceeeEEeccCCceeEEEEEEecCCCeeEEccccceEEEEEcCCCCeEEEeeecCCCcEEEEeecc
Q 042146          196 RKILKTYSGYTNSKYCISSTFSVTNGKYIVSHRDPVISVASHPAKNIIASGALDNDRTMKIWTQEK  261 (262)
Q Consensus       196 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~d~d~~i~iw~~~~  261 (262)
                      ++.+..+..+..........   ........+...+++++|+|++++|++|+  .||.|++|++.+
T Consensus       633 ~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~l~~spdg~~l~sgs--~Dg~i~iW~i~~  693 (694)
T 3dm0_A          633 KSIVEDLKVDLKAEAEKADN---SGPAATKRKVIYCTSLNWSADGSTLFSGY--TDGVIRVWGIGR  693 (694)
T ss_dssp             TEEEEEECCCCC-------------------CCCCEEEEEECTTSSEEEEEE--TTSEEEEEEC--
T ss_pred             CCChhhhccccccccccccc---cccccCCceeEEeeeEEEcCCCCEEEEEc--CCCeEEEEeccC
Confidence            99888876532211000000   00000001223578999999999999999  999999999864

>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}

Probab=100.00  E-value=2.8e-36  Score=238.85  Aligned_cols=228  Identities=14%  Similarity=0.243  Sum_probs=177.5

Q ss_pred             ccceecccCcCceEEEEEccCCCeEEEecCCCeEEEeecCCCC--CCCC--CCCCCCccccC--C--cccc---ccceeE
Q 042146           14 TLTQTLNGHLRAVSYVKFSHDGRLLTSSSAEKTLLTYSLSSIS--NFDS--TPPSPLQKFTG--H--EQGI---SDLATI   82 (262)
Q Consensus        14 ~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~iw~~~~~~--~~~~--~~~~~~~~~~~--~--~~~v---~~~~~i   82 (262)
                      +++..+++|.++|++++|+|++++|++|+.||.|++|++....  ....  .....+..+..  .  ...+   ...+.|
T Consensus         2 ~~~~~~~~h~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~v   81 (379)
T 3jrp_A            2 SMVVIANAHNELIHDAVLDYYGKRLATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKV   81 (379)
T ss_dssp             ---CCEEECCCCEEEEEECSSSSEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSCE
T ss_pred             CccEEecCCcccEEEEEEcCCCCEEEEEECCCcEEEEecCCCcceeeeEecCCCCcEEEEEeCCCCCCCEEEEeccCCEE
Confidence            4567889999999999999999999999999999999986321  1000  01111111111  1  1111   122389


Q ss_pred             EEEecCCCc--cceecccCCcceEEEEEeCC--CCEEEeecCCCeEEEEECCCCe--eeeeeecCCCCeeeEEEcc----
Q 042146           83 RLWDVPTAT--SLKTLIGHTNYVFCINFNPQ--SNRIVSDTFNETIRIWDIKTGK--CLKVLPAHSDPVTAIDFNR----  152 (262)
Q Consensus        83 ~v~d~~~~~--~~~~~~~~~~~v~~~~~~~~--~~~l~~~~~dg~i~vwd~~~~~--~~~~~~~~~~~v~~~~~~~----  152 (262)
                      ++||+.+++  .+..+..|...|.+++|+|+  ++++++++.||.|++||++++.  ....+..|...|.+++|+|    
T Consensus        82 ~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~  161 (379)
T 3jrp_A           82 LIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIE  161 (379)
T ss_dssp             EEEEEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEECCTTSCCCEEEEECCTTCEEEEEECCCC--
T ss_pred             EEEEcCCCceeEeeeecCCCcceEEEEeCCCCCCCEEEEecCCCcEEEEecCCCCceeeEEecCCCCceEEEEEcCcccc
Confidence            999999887  67778889999999999998  9999999999999999998773  3445678999999999999    


Q ss_pred             ---------CCCEEEEEeCCCeEEEEeCCC------------------------CC---ccEEEEEcCCCeEEEEecCCC
Q 042146          153 ---------DGTMIVTSSYDGLYRILDAST------------------------PN---GKFILVGTLDNTLRLWNYSTR  196 (262)
Q Consensus       153 ---------~~~~l~~~~~dg~i~~~d~~~------------------------~~---~~~l~~~~~dg~i~i~d~~~~  196 (262)
                               ++.+|++++.||.|++||++.                        |+   +++|++++.||.|++||++++
T Consensus       162 ~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~l~s~~~dg~i~iwd~~~~  241 (379)
T 3jrp_A          162 EDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYLASVSQDRTCIIWTQDNE  241 (379)
T ss_dssp             --------CTTCEEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSSEEEEEEETTSCEEEEEESST
T ss_pred             ccccccCCCCCCEEEEEeCCCeEEEEEecCCCcceeeEEEEecccCcEeEEEECCCCCCCCeEEEEeCCCEEEEEeCCCC
Confidence                     699999999999999999764                        67   899999999999999999986


Q ss_pred             ceeeEEeccCCceeEEEEEEecCCCeeEEccccceEEEEEcCCCCeEEEeeecCCCcEEEEeec
Q 042146          197 KILKTYSGYTNSKYCISSTFSVTNGKYIVSHRDPVISVASHPAKNIIASGALDNDRTMKIWTQE  260 (262)
Q Consensus       197 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~d~d~~i~iw~~~  260 (262)
                      ...........                 ..|...|.+++|+|++++|++++  .||.|++|+++
T Consensus       242 ~~~~~~~~~~~-----------------~~~~~~v~~~~~s~~g~~l~~~~--~dg~i~iw~~~  286 (379)
T 3jrp_A          242 QGPWKKTLLKE-----------------EKFPDVLWRASWSLSGNVLALSG--GDNKVTLWKEN  286 (379)
T ss_dssp             TSCCEEEESSS-----------------SCCSSCEEEEEECSSSCCEEEEE--SSSSEEEEEEE
T ss_pred             Cccceeeeecc-----------------ccCCCcEEEEEEcCCCCEEEEec--CCCcEEEEeCC
Confidence            42211110000                 01778999999999999999999  89999999986

>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A

Probab=100.00  E-value=5.2e-36  Score=234.33  Aligned_cols=244  Identities=16%  Similarity=0.209  Sum_probs=175.0

Q ss_pred             ceecccCcCceEEEEEccCCCeEEEecCCCeEEEeecCCCCCCC------CCCCCCCccccCCc---c-cc---ccceeE
Q 042146           16 TQTLNGHLRAVSYVKFSHDGRLLTSSSAEKTLLTYSLSSISNFD------STPPSPLQKFTGHE---Q-GI---SDLATI   82 (262)
Q Consensus        16 ~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~------~~~~~~~~~~~~~~---~-~v---~~~~~i   82 (262)
                      ...+.+|.++|++++|+|++++|++|+.||.|++||+.......      ......+..+....   . .+   ...+.|
T Consensus         4 ~~~~~gH~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~d~~~l~s~~~dg~v   83 (351)
T 3f3f_A            4 QPFDSGHDDLVHDVVYDFYGRHVATCSSDQHIKVFKLDKDTSNWELSDSWRAHDSSIVAIDWASPEYGRIIASASYDKTV   83 (351)
T ss_dssp             CCEECCCSSCEEEEEECSSSSEEEEEETTSEEEEEEECSSSCCEEEEEEEECCSSCEEEEEECCGGGCSEEEEEETTSCE
T ss_pred             cccCcccccceeEEEEcCCCCEEEEeeCCCeEEEEECCCCCCcceecceeccCCCcEEEEEEcCCCCCCEEEEEcCCCeE
Confidence            45678999999999999999999999999999999987532110      00111111111111   1 11   122389


Q ss_pred             EEEecCCC---------ccceecccCCcceEEEEEeCC--CCEEEeecCCCeEEEEECCCCeeeeeee------------
Q 042146           83 RLWDVPTA---------TSLKTLIGHTNYVFCINFNPQ--SNRIVSDTFNETIRIWDIKTGKCLKVLP------------  139 (262)
Q Consensus        83 ~v~d~~~~---------~~~~~~~~~~~~v~~~~~~~~--~~~l~~~~~dg~i~vwd~~~~~~~~~~~------------  139 (262)
                      ++||+.++         +.+..+..|...|.+++|+|+  ++++++++.||.|++||+++++.+..+.            
T Consensus        84 ~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~  163 (351)
T 3f3f_A           84 KLWEEDPDQEECSGRRWNKLCTLNDSKGSLYSVKFAPAHLGLKLACLGNDGILRLYDALEPSDLRSWTLTSEMKVLSIPP  163 (351)
T ss_dssp             EEEEECTTSCTTSSCSEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTCEEEEEECSSTTCTTCCEEEEEEESCSCCC
T ss_pred             EEEecCCCcccccccCcceeeeecccCCceeEEEEcCCCCCcEEEEecCCCcEEEecCCChHHhcccccccccccccccc
Confidence            99999887         446677889999999999999  9999999999999999998876554432            


Q ss_pred             -cCCCCeeeEEEccC---CCEEEEEeCCCeEEEEeCCC----------------------CCc----cEEEEEcCCCeEE
Q 042146          140 -AHSDPVTAIDFNRD---GTMIVTSSYDGLYRILDAST----------------------PNG----KFILVGTLDNTLR  189 (262)
Q Consensus       140 -~~~~~v~~~~~~~~---~~~l~~~~~dg~i~~~d~~~----------------------~~~----~~l~~~~~dg~i~  189 (262)
                       .|...+.+++|+|+   +.++++++.++.+.+|+...                      |++    ++|++|+.||.|+
T Consensus       164 ~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~~p~~~~~~~~l~s~~~dg~i~  243 (351)
T 3f3f_A          164 ANHLQSDFCLSWCPSRFSPEKLAVSALEQAIIYQRGKDGKLHVAAKLPGHKSLIRSISWAPSIGRWYQLIATGCKDGRIR  243 (351)
T ss_dssp             SSCSCCCEEEEECCCSSSCCEEEEEETTEEEEEEECTTSCEEEEEECCCCCSCEEEEEECCCSSCSSEEEEEEETTSCEE
T ss_pred             CCcccceeEEEeccCCCCCcEEEEecCCCcEEEEccCCCceeeeeecCCCCcceeEEEECCCCCCcceEEEEEcCCCeEE
Confidence             57789999999997   89999999999998877554                      666    8999999999999


Q ss_pred             EEecCCCceeeEEeccCCceeEEEE---------------------E---EecCCCeeEEccccceEEEEEcCCCCeEEE
Q 042146          190 LWNYSTRKILKTYSGYTNSKYCISS---------------------T---FSVTNGKYIVSHRDPVISVASHPAKNIIAS  245 (262)
Q Consensus       190 i~d~~~~~~~~~~~~~~~~~~~~~~---------------------~---~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~  245 (262)
                      +||++.+..................                     .   ........+.+|...|++++|+|++++|++
T Consensus       244 iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s  323 (351)
T 3f3f_A          244 IFKITEKLSPLASEESLTNSNMFDNSADVDMDAQGRSDSNTEEKAELQSNLQVELLSEHDDHNGEVWSVSWNLTGTILSS  323 (351)
T ss_dssp             EEEEEECC---------------------------------------CCSEEEEEEEEECTTSSCEEEEEECSSSCCEEE
T ss_pred             EEeCCCCcCccccCCcccceeccCCCcccccccccccccccceeeeecccccccEEEEEecccccEEEEEEcCCCCEEEE
Confidence            9999876433222111100000000                     0   000001112348899999999999999999


Q ss_pred             eeecCCCcEEEEeecc
Q 042146          246 GALDNDRTMKIWTQEK  261 (262)
Q Consensus       246 ~~~d~d~~i~iw~~~~  261 (262)
                      ++  .||.|++|+++.
T Consensus       324 ~~--~dg~v~iw~~~~  337 (351)
T 3f3f_A          324 AG--DDGKVRLWKATY  337 (351)
T ss_dssp             EE--TTSCEEEEEECT
T ss_pred             ec--CCCcEEEEecCc
Confidence            99  899999999874

>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}

Probab=100.00  E-value=8.1e-36  Score=238.54  Aligned_cols=227  Identities=24%  Similarity=0.405  Sum_probs=188.5

Q ss_pred             CCCceeeec--ccccceeccc-CcCceEEEEEccCCCeEEEecCCCeEEEeecCCCCCCCCCCCCCCccccCCccccccc
Q 042146            3 SDRSLESFR--PYTLTQTLNG-HLRAVSYVKFSHDGRLLTSSSAEKTLLTYSLSSISNFDSTPPSPLQKFTGHEQGISDL   79 (262)
Q Consensus         3 ~d~~i~~~~--~~~~~~~~~~-h~~~v~~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~   79 (262)
                      .|++|..|+  ..+....+.. |...|.+++|+|++++|++|+.||.|++||+....        ....+.+|...+..+
T Consensus       111 ~d~~v~lw~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~~--------~~~~~~~~~~~v~~~  182 (401)
T 4aez_A          111 LERNVYVWNADSGSVSALAETDESTYVASVKWSHDGSFLSVGLGNGLVDIYDVESQT--------KLRTMAGHQARVGCL  182 (401)
T ss_dssp             ETTEEEEEETTTCCEEEEEECCTTCCEEEEEECTTSSEEEEEETTSCEEEEETTTCC--------EEEEECCCSSCEEEE
T ss_pred             CCCeEEEeeCCCCcEeEeeecCCCCCEEEEEECCCCCEEEEECCCCeEEEEECcCCe--------EEEEecCCCCceEEE
Confidence            578888886  4445555554 89999999999999999999999999999986532        222333333333222


Q ss_pred             -------------eeEEEEecC-CCccceecccCCcceEEEEEeCCCCEEEeecCCCeEEEEECCCCeeeeeeecCCCCe
Q 042146           80 -------------ATIRLWDVP-TATSLKTLIGHTNYVFCINFNPQSNRIVSDTFNETIRIWDIKTGKCLKVLPAHSDPV  145 (262)
Q Consensus        80 -------------~~i~v~d~~-~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~v  145 (262)
                                   +.|++||++ ....+..+.+|...|.+++|+|++++|++|+.||.|++||+++++++..+..|...|
T Consensus       183 ~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~v  262 (401)
T 4aez_A          183 SWNRHVLSSGSRSGAIHHHDVRIANHQIGTLQGHSSEVCGLAWRSDGLQLASGGNDNVVQIWDARSSIPKFTKTNHNAAV  262 (401)
T ss_dssp             EEETTEEEEEETTSEEEEEETTSSSCEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEETTCSSEEEEECCCSSCC
T ss_pred             EECCCEEEEEcCCCCEEEEecccCcceeeEEcCCCCCeeEEEEcCCCCEEEEEeCCCeEEEccCCCCCccEEecCCcceE
Confidence                         389999998 456677888999999999999999999999999999999999999999998999999


Q ss_pred             eeEEEccCCC-EEEEEe--CCCeEEEEeCCC-------------------CCccEEEE--EcCCCeEEEEecCCCceeeE
Q 042146          146 TAIDFNRDGT-MIVTSS--YDGLYRILDAST-------------------PNGKFILV--GTLDNTLRLWNYSTRKILKT  201 (262)
Q Consensus       146 ~~~~~~~~~~-~l~~~~--~dg~i~~~d~~~-------------------~~~~~l~~--~~~dg~i~i~d~~~~~~~~~  201 (262)
                      .+++|+|++. ++++++  .|+.|++||++.                   ++++++++  |+.||.|++||+++++....
T Consensus       263 ~~~~~~p~~~~ll~~~~gs~d~~i~i~d~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~g~~dg~i~v~~~~~~~~~~~  342 (401)
T 4aez_A          263 KAVAWCPWQSNLLATGGGTMDKQIHFWNAATGARVNTVDAGSQVTSLIWSPHSKEIMSTHGFPDNNLSIWSYSSSGLTKQ  342 (401)
T ss_dssp             CEEEECTTSTTEEEEECCTTTCEEEEEETTTCCEEEEEECSSCEEEEEECSSSSEEEEEECTTTCEEEEEEEETTEEEEE
T ss_pred             EEEEECCCCCCEEEEecCCCCCEEEEEECCCCCEEEEEeCCCcEEEEEECCCCCeEEEEeecCCCcEEEEecCCccceeE
Confidence            9999999765 556654  799999999876                   78899998  55899999999998765554


Q ss_pred             --EeccCCceeEEEEEEecCCCeeEEccccceEEEEEcCCCCeEEEeeecCCCcEEEEeecc
Q 042146          202 --YSGYTNSKYCISSTFSVTNGKYIVSHRDPVISVASHPAKNIIASGALDNDRTMKIWTQEK  261 (262)
Q Consensus       202 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~d~d~~i~iw~~~~  261 (262)
                        +.+                      |...|.+++|+|++.+|++++  .||.|++|++..
T Consensus       343 ~~~~~----------------------h~~~v~~~~~s~dg~~l~s~~--~dg~i~iw~~~~  380 (401)
T 4aez_A          343 VDIPA----------------------HDTRVLYSALSPDGRILSTAA--SDENLKFWRVYD  380 (401)
T ss_dssp             EEEEC----------------------CSSCCCEEEECTTSSEEEEEC--TTSEEEEEECCC
T ss_pred             EEecC----------------------CCCCEEEEEECCCCCEEEEEe--CCCcEEEEECCC
Confidence              333                      889999999999999999999  899999999864

>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}

Probab=100.00  E-value=8e-36  Score=239.51  Aligned_cols=233  Identities=18%  Similarity=0.271  Sum_probs=194.4

Q ss_pred             CCCceeeec-ccccceecccCcCceEEEEEccCCCeEEEecCCCeEEEeecCCCCCCCCCCCCC----------------
Q 042146            3 SDRSLESFR-PYTLTQTLNGHLRAVSYVKFSHDGRLLTSSSAEKTLLTYSLSSISNFDSTPPSP----------------   65 (262)
Q Consensus         3 ~d~~i~~~~-~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~----------------   65 (262)
                      .|+.|..|+ ..+....+.+|..+|.+++|+|++++|++++.|+.|++||+.............                
T Consensus       128 ~dg~i~i~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  207 (425)
T 1r5m_A          128 ENGELRLWNKTGALLNVLNFHRAPIVSVKWNKDGTHIISMDVENVTILWNVISGTVMQHFELKETGGSSINAENHSGDGS  207 (425)
T ss_dssp             TTSCEEEEETTSCEEEEECCCCSCEEEEEECTTSSEEEEEETTCCEEEEETTTTEEEEEECCC---------------CC
T ss_pred             CCCeEEEEeCCCCeeeeccCCCccEEEEEECCCCCEEEEEecCCeEEEEECCCCcEEEEeeccccCccceeeccccCCcc
Confidence            578888886 456778889999999999999999999999999999999997643211100000                


Q ss_pred             -CccccCCccc----cccceeEEEEecCCCccceecccCCcceEEEEEeCCCCEEEeecCCCeEEEEECCCCeeeeeeec
Q 042146           66 -LQKFTGHEQG----ISDLATIRLWDVPTATSLKTLIGHTNYVFCINFNPQSNRIVSDTFNETIRIWDIKTGKCLKVLPA  140 (262)
Q Consensus        66 -~~~~~~~~~~----v~~~~~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~  140 (262)
                       ...+......    ....+.|++||+.+++.+..+..|...|.+++|+|++++|++++.||.|++||+++++.+..+..
T Consensus       208 ~~~~~~~~~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~  287 (425)
T 1r5m_A          208 LGVDVEWVDDDKFVIPGPKGAIFVYQITEKTPTGKLIGHHGPISVLEFNDTNKLLLSASDDGTLRIWHGGNGNSQNCFYG  287 (425)
T ss_dssp             CBSCCEEEETTEEEEECGGGCEEEEETTCSSCSEEECCCSSCEEEEEEETTTTEEEEEETTSCEEEECSSSBSCSEEECC
T ss_pred             eeeEEEEcCCCEEEEEcCCCeEEEEEcCCCceeeeeccCCCceEEEEECCCCCEEEEEcCCCEEEEEECCCCccceEecC
Confidence             1111111111    11223899999999999999999999999999999999999999999999999999999999988


Q ss_pred             CCCCeeeEEEccCCCEEEEEeCCCeEEEEeCCC--------------------CCccEEEEEcCCCeEEEEecCCCc---
Q 042146          141 HSDPVTAIDFNRDGTMIVTSSYDGLYRILDAST--------------------PNGKFILVGTLDNTLRLWNYSTRK---  197 (262)
Q Consensus       141 ~~~~v~~~~~~~~~~~l~~~~~dg~i~~~d~~~--------------------~~~~~l~~~~~dg~i~i~d~~~~~---  197 (262)
                      |...|.+++|+|++ ++++++.|+.|++||++.                    +++++|++++.||.|++||+++++   
T Consensus       288 ~~~~i~~~~~~~~~-~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~~~~~~~~~~  366 (425)
T 1r5m_A          288 HSQSIVSASWVGDD-KVISCSMDGSVRLWSLKQNTLLALSIVDGVPIFAGRISQDGQKYAVAFMDGQVNVYDLKKLNSKS  366 (425)
T ss_dssp             CSSCEEEEEEETTT-EEEEEETTSEEEEEETTTTEEEEEEECTTCCEEEEEECTTSSEEEEEETTSCEEEEECHHHHC--
T ss_pred             CCccEEEEEECCCC-EEEEEeCCCcEEEEECCCCcEeEecccCCccEEEEEEcCCCCEEEEEECCCeEEEEECCCCccce
Confidence            99999999999999 999999999999999876                    789999999999999999999877   


Q ss_pred             -----------------eeeEEeccCCceeEEEEEEecCCCeeEEcccc--ceEEEEEcCCCCeEEEeeecCCCcEEEEe
Q 042146          198 -----------------ILKTYSGYTNSKYCISSTFSVTNGKYIVSHRD--PVISVASHPAKNIIASGALDNDRTMKIWT  258 (262)
Q Consensus       198 -----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~v~~~~~~p~~~~l~~~~~d~d~~i~iw~  258 (262)
                                       ++..+..                      |..  .|.+++|+|++++|++++  .||.|++|+
T Consensus       367 ~~~~~~~~~~~~~~~~~~~~~~~~----------------------~~~~~~v~~~~~s~~~~~l~~~~--~dg~i~iw~  422 (425)
T 1r5m_A          367 RSLYGNRDGILNPLPIPLYASYQS----------------------SQDNDYIFDLSWNCAGNKISVAY--SLQEGSVVA  422 (425)
T ss_dssp             ------------CEECCEEEEECC----------------------TTCCCCEEEEEECTTSSEEEEEE--SSSCCEEEE
T ss_pred             eeeecccccccCcccchhhhhhcC----------------------cccCCceEEEEccCCCceEEEEe--cCceEEEEe
Confidence                             4444444                      655  999999999999999999  899999999


Q ss_pred             ec
Q 042146          259 QE  260 (262)
Q Consensus       259 ~~  260 (262)
                      ++
T Consensus       423 ~~  424 (425)
T 1r5m_A          423 IP  424 (425)
T ss_dssp             CC
T ss_pred             ec
Confidence            86

>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}

Probab=100.00  E-value=2.7e-35  Score=232.25  Aligned_cols=236  Identities=20%  Similarity=0.307  Sum_probs=194.5

Q ss_pred             CCCCceeeec--ccccceecccCcCceEEEEEccCCCeEEEecCCCeEEEeecCCCCCCCCCC-CCCCcccc--CCcccc
Q 042146            2 SSDRSLESFR--PYTLTQTLNGHLRAVSYVKFSHDGRLLTSSSAEKTLLTYSLSSISNFDSTP-PSPLQKFT--GHEQGI   76 (262)
Q Consensus         2 s~d~~i~~~~--~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~-~~~~~~~~--~~~~~v   76 (262)
                      +.|+.|..|+  ..+.+..+.+|...|.+++|+|++++|++++.||.|++||+.......... ...+..+.  .....+
T Consensus        51 ~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l  130 (369)
T 3zwl_B           51 SKDSSASVWYSLNGERLGTLDGHTGTIWSIDVDCFTKYCVTGSADYSIKLWDVSNGQCVATWKSPVPVKRVEFSPCGNYF  130 (369)
T ss_dssp             ESSSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTTEEEEEETTTCCEEEEEECSSCEEEEEECTTSSEE
T ss_pred             eCCCEEEEEeCCCchhhhhhhhcCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEeecCCCeEEEEEccCCCEE
Confidence            3588888885  567888999999999999999999999999999999999987643221111 11111111  111111


Q ss_pred             c---c-----ceeEEEEecCCCcc-----------ceecccCCc--ceEEEEEeCCCCEEEeecCCCeEEEEECCC-Cee
Q 042146           77 S---D-----LATIRLWDVPTATS-----------LKTLIGHTN--YVFCINFNPQSNRIVSDTFNETIRIWDIKT-GKC  134 (262)
Q Consensus        77 ~---~-----~~~i~v~d~~~~~~-----------~~~~~~~~~--~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~-~~~  134 (262)
                      .   .     .+.|++||+.....           ...+..|..  .+.+++|+|+++++++++.||.|++||+++ .+.
T Consensus       131 ~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~  210 (369)
T 3zwl_B          131 LAILDNVMKNPGSINIYEIERDSATHELTKVSEEPIHKIITHEGLDAATVAGWSTKGKYIIAGHKDGKISKYDVSNNYEY  210 (369)
T ss_dssp             EEEECCBTTBCCEEEEEEEEECTTTCCEEEECSSCSEEEECCTTCCCEEEEEECGGGCEEEEEETTSEEEEEETTTTTEE
T ss_pred             EEecCCccCCCCEEEEEEecCCccceeecccccceeeeccCCcCccceeEEEEcCCCCEEEEEcCCCEEEEEECCCCcEe
Confidence            1   1     15899999976643           333445555  899999999999999999999999999998 788


Q ss_pred             eeeeecCCCCeeeEEEccCCCEEEEEeCCCeEEEEeCCC-------------------CCccEEEEEcCCC---------
Q 042146          135 LKVLPAHSDPVTAIDFNRDGTMIVTSSYDGLYRILDAST-------------------PNGKFILVGTLDN---------  186 (262)
Q Consensus       135 ~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~d~~~-------------------~~~~~l~~~~~dg---------  186 (262)
                      +..+..|...|.+++|+|++++|++++.|+.|++||++.                   ++++++++++.++         
T Consensus       211 ~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~  290 (369)
T 3zwl_B          211 VDSIDLHEKSISDMQFSPDLTYFITSSRDTNSFLVDVSTLQVLKKYETDCPLNTAVITPLKEFIILGGGQEAKDVTTTSA  290 (369)
T ss_dssp             EEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECSSCEEEEEECSSSSEEEEEECCC---------
T ss_pred             EEEEecCCCceeEEEECCCCCEEEEecCCceEEEEECCCCceeeeecCCCCceeEEecCCCceEEEeecCCCceEEEEec
Confidence            888999999999999999999999999999999999886                   7899999999888         


Q ss_pred             -----eEEEEecCCCceeeEEeccCCceeEEEEEEecCCCeeEEccccceEEEEEcCCCCeEEEeeecCCCcEEEEeecc
Q 042146          187 -----TLRLWNYSTRKILKTYSGYTNSKYCISSTFSVTNGKYIVSHRDPVISVASHPAKNIIASGALDNDRTMKIWTQEK  261 (262)
Q Consensus       187 -----~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~d~d~~i~iw~~~~  261 (262)
                           .+++||+.+++.+..+.+                      |...|.+++|+|++++|++++  .||.|++|++++
T Consensus       291 ~~~~~~i~~~d~~~~~~~~~~~~----------------------~~~~v~~~~~s~~~~~l~s~~--~dg~v~iw~~~~  346 (369)
T 3zwl_B          291 NEGKFEARFYHKIFEEEIGRVQG----------------------HFGPLNTVAISPQGTSYASGG--EDGFIRLHHFEK  346 (369)
T ss_dssp             ----CEEEEEETTTCCEEEEEEC----------------------CSSCEEEEEECTTSSEEEEEE--TTSEEEEEEECH
T ss_pred             CCCcceeEEEecCCCcchhheec----------------------ccCcEEEEEECCCCCEEEEEc--CCCeEEEEECcc
Confidence                 899999999999988887                      888999999999999999999  899999999864

>2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}

Probab=100.00  E-value=1.5e-36  Score=248.88  Aligned_cols=258  Identities=13%  Similarity=0.097  Sum_probs=184.0

Q ss_pred             CCCCceeeecc--ccc----ceecccCcCceEEEEEccC------CCeEEEecCCCeEEEeecCCCCCCCC---CCCCCC
Q 042146            2 SSDRSLESFRP--YTL----TQTLNGHLRAVSYVKFSHD------GRLLTSSSAEKTLLTYSLSSISNFDS---TPPSPL   66 (262)
Q Consensus         2 s~d~~i~~~~~--~~~----~~~~~~h~~~v~~~~~~~~------~~~l~s~~~d~~i~iw~~~~~~~~~~---~~~~~~   66 (262)
                      +.|++|+.|+.  .+.    ...+.+|.+.|.+++|+|+      +.+||+++.||+|++||+........   ....+.
T Consensus       180 s~D~tI~iWd~~~~~~~~~~~~~l~~~~~~V~~v~wsp~~~~~~~~~~LAs~s~DgtvrlWd~~~~~~~~~~~~~~~~p~  259 (524)
T 2j04_B          180 KHSSCIQIFKMNTSTLHCVKVQTIVHSFGEVWDLKWHEGCHAPHLVGCLSFVSQEGTINFLEIIDNATDVHVFKMCEKPS  259 (524)
T ss_dssp             --CEEEEEEEEETTTCCEEEEEEEEECCCSEEEEEECSSCCCSSSSCEEEEEETTSCEEEEECCCCSSSSSEEECCCSCS
T ss_pred             CCCceEEEEEccCCCCCceEEEEEEecCCcEEEEEECCCCCCCCCCceEEEEecCCeEEEEEcCCCccccccceeecCce
Confidence            46888888862  222    2456778899999999997      57999999999999999976432100   011122


Q ss_pred             ccccCCccccccc--------------eeEEEEecCCCc-cceecccCCcceEEE--EEeCCC-CEEEeecCCCeEEEEE
Q 042146           67 QKFTGHEQGISDL--------------ATIRLWDVPTAT-SLKTLIGHTNYVFCI--NFNPQS-NRIVSDTFNETIRIWD  128 (262)
Q Consensus        67 ~~~~~~~~~v~~~--------------~~i~v~d~~~~~-~~~~~~~~~~~v~~~--~~~~~~-~~l~~~~~dg~i~vwd  128 (262)
                      ..+.+|...+.++              +.|++||++++. +...+.+|...|.++  +|+|++ .+|++|+.|++|++||
T Consensus       260 ~~l~~h~~~v~sv~~s~~~~lasgs~DgtV~lWD~~~~~~~~~~~~~H~~~V~sv~~~~s~~g~~~laS~S~D~tvklWD  339 (524)
T 2j04_B          260 LTLSLADSLITTFDFLSPTTVVCGFKNGFVAEFDLTDPEVPSFYDQVHDSYILSVSTAYSDFEDTVVSTVAVDGYFYIFN  339 (524)
T ss_dssp             EEECCTTTCEEEEEESSSSEEEEEETTSEEEEEETTBCSSCSEEEECSSSCEEEEEEECCTTSCCEEEEEETTSEEEEEC
T ss_pred             EEEEcCCCCEEEEEecCCCeEEEEeCCCEEEEEECCCCCCceEEeecccccEEEEEEEcCCCCCeEEEEeccCCeEEEEE
Confidence            2333333333222              299999998764 445688999999999  567787 8999999999999999


Q ss_pred             CCCCeeeeeeecCCC--CeeeEEEccCCCEEEEEeCCCeEEEEeCCC--------------------CCccEEEEEcCCC
Q 042146          129 IKTGKCLKVLPAHSD--PVTAIDFNRDGTMIVTSSYDGLYRILDAST--------------------PNGKFILVGTLDN  186 (262)
Q Consensus       129 ~~~~~~~~~~~~~~~--~v~~~~~~~~~~~l~~~~~dg~i~~~d~~~--------------------~~~~~l~~~~~dg  186 (262)
                      +++++++..+.+|..  .|.+++|+|++..+++++.|++|++||++.                    |++++|++|+.||
T Consensus       340 ~~~~~~~~~~~~~~~~~~v~~v~fsp~~~~l~s~~~d~tv~lwd~~~~~~~~~l~gH~~~V~sva~Sp~g~~l~Sgs~Dg  419 (524)
T 2j04_B          340 PKDIATTKTTVSRFRGSNLVPVVYCPQIYSYIYSDGASSLRAVPSRAAFAVHPLVSRETTITAIGVSRLHPMVLAGSADG  419 (524)
T ss_dssp             GGGHHHHCEEEEECSCCSCCCEEEETTTTEEEEECSSSEEEEEETTCTTCCEEEEECSSCEEEEECCSSCCBCEEEETTT
T ss_pred             CCCCCcccccccccccCcccceEeCCCcCeEEEeCCCCcEEEEECcccccceeeecCCCceEEEEeCCCCCeEEEEECCC
Confidence            999887777766653  588999999999999999999999999876                    7899999999999


Q ss_pred             eEEEEecCCCceeeEEeccC---CceeEEEEEEecCC--------------------CeeEEccccceEEEEEcCCCC--
Q 042146          187 TLRLWNYSTRKILKTYSGYT---NSKYCISSTFSVTN--------------------GKYIVSHRDPVISVASHPAKN--  241 (262)
Q Consensus       187 ~i~i~d~~~~~~~~~~~~~~---~~~~~~~~~~~~~~--------------------~~~~~~~~~~v~~~~~~p~~~--  241 (262)
                      +|++||+..+ .+.......   .......+.+++..                    ...+.+|..+|.+++|+|++.  
T Consensus       420 tv~lwd~~~~-~~~~~~~~~~~~~~~~v~~v~~sp~g~~~~~~~~~~~~~~~~~g~~~~~l~gh~~~V~~Vafsp~~~~~  498 (524)
T 2j04_B          420 SLIITNAARR-LLHGIKNSSATQKSLRLWKWDYSIKDDKYRIDSSYEVYPLTVNDVSKAKIDAHGINITCTKWNETSAGG  498 (524)
T ss_dssp             EEECCBSCSS-TTTCC------CCCCEEEECBCCSSSCEEEECCCCCCCC-------------CCCSCCCEEECCSTTTT
T ss_pred             EEEEEechHh-hccccccCccceeeeEEEEeccCCCCCeEEccCCceecccccCCcceeeecCCCceEEEEECCCCCCcc
Confidence            9999998643 222111000   00011122222211                    123445899999999999965  


Q ss_pred             -eEEEeeecCCCcEEEEeeccC
Q 042146          242 -IIASGALDNDRTMKIWTQEKE  262 (262)
Q Consensus       242 -~l~~~~~d~d~~i~iw~~~~~  262 (262)
                       .+|+|+  .||.|+||++..|
T Consensus       499 ~~lAsg~--~~g~vrlw~l~~~  518 (524)
T 2j04_B          499 KCYAFSN--SAGLLTLEYLSLE  518 (524)
T ss_dssp             TEEEEEC--TTSEEEEEECSCC
T ss_pred             HHHHhhc--cCceEEEEEcccc
Confidence             899998  8999999998754

>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}

Probab=100.00  E-value=1.4e-35  Score=236.96  Aligned_cols=231  Identities=16%  Similarity=0.304  Sum_probs=185.3

Q ss_pred             eeeecccccceecccCcCceEEEEEcc-CCCeEEEecCCCeEEEeecCCCCCCCCC---------------CCCCCcccc
Q 042146            7 LESFRPYTLTQTLNGHLRAVSYVKFSH-DGRLLTSSSAEKTLLTYSLSSISNFDST---------------PPSPLQKFT   70 (262)
Q Consensus         7 i~~~~~~~~~~~~~~h~~~v~~~~~~~-~~~~l~s~~~d~~i~iw~~~~~~~~~~~---------------~~~~~~~~~   70 (262)
                      ++.++..+....+.+|.++|++++|+| ++++|++|+.||.|++||+.........               ....+..+.
T Consensus        27 v~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~  106 (408)
T 4a11_B           27 VLGLELNKDRDVERIHGGGINTLDIEPVEGRYMLSGGSDGVIVLYDLENSSRQSYYTCKAVCSIGRDHPDVHRYSVETVQ  106 (408)
T ss_dssp             HHTEEECTTEEECCCCSSCEEEEEECTTTCCEEEEEETTSCEEEEECCCCSSSSCEEECEEEEECTTCTTCCSSCEEEEE
T ss_pred             eeccccCcceeeeeccCCcEEEEEEecCCCCEEEEEcCCCeEEEEECCCCcccceEeccccccccccccccCCCcEEEEE
Confidence            344456677788899999999999999 9999999999999999999864332111               000000000


Q ss_pred             CC--------------------------------ccccc------------------cceeEEEEecCCCccceecccCC
Q 042146           71 GH--------------------------------EQGIS------------------DLATIRLWDVPTATSLKTLIGHT  100 (262)
Q Consensus        71 ~~--------------------------------~~~v~------------------~~~~i~v~d~~~~~~~~~~~~~~  100 (262)
                      ..                                ...+.                  ..+.|++||+.+++.+..+..|.
T Consensus       107 ~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~  186 (408)
T 4a11_B          107 WYPHDTGMFTSSSFDKTLKVWDTNTLQTADVFNFEETVYSHHMSPVSTKHCLVAVGTRGPKVQLCDLKSGSCSHILQGHR  186 (408)
T ss_dssp             ECTTCTTCEEEEETTSEEEEEETTTTEEEEEEECSSCEEEEEECSSCSSCCEEEEEESSSSEEEEESSSSCCCEEECCCC
T ss_pred             EccCCCcEEEEEeCCCeEEEeeCCCCccceeccCCCceeeeEeecCCCCCcEEEEEcCCCeEEEEeCCCcceeeeecCCC
Confidence            00                                00000                  00178888888888888888999


Q ss_pred             cceEEEEEeCCCC-EEEeecCCCeEEEEECCCCe-eeeee---------------ecCCCCeeeEEEccCCCEEEEEeCC
Q 042146          101 NYVFCINFNPQSN-RIVSDTFNETIRIWDIKTGK-CLKVL---------------PAHSDPVTAIDFNRDGTMIVTSSYD  163 (262)
Q Consensus       101 ~~v~~~~~~~~~~-~l~~~~~dg~i~vwd~~~~~-~~~~~---------------~~~~~~v~~~~~~~~~~~l~~~~~d  163 (262)
                      ..|.+++|+|+++ ++++++.||.|++||++++. ++..+               ..|...|.+++|+|++++|++++.|
T Consensus       187 ~~v~~~~~~~~~~~ll~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d  266 (408)
T 4a11_B          187 QEILAVSWSPRYDYILATASADSRVKLWDVRRASGCLITLDQHNGKKSQAVESANTAHNGKVNGLCFTSDGLHLLTVGTD  266 (408)
T ss_dssp             SCEEEEEECSSCTTEEEEEETTSCEEEEETTCSSCCSEECCTTTTCSCCCTTTSSCSCSSCEEEEEECTTSSEEEEEETT
T ss_pred             CcEEEEEECCCCCcEEEEEcCCCcEEEEECCCCCcccccccccccccceeeccccccccCceeEEEEcCCCCEEEEecCC
Confidence            9999999999988 58899999999999998765 33333               5688899999999999999999999


Q ss_pred             CeEEEEeCCC-------------------------CCccEEEEEcCCCeEEEEecCCCceeeEEeccCCceeEEEEEEec
Q 042146          164 GLYRILDAST-------------------------PNGKFILVGTLDNTLRLWNYSTRKILKTYSGYTNSKYCISSTFSV  218 (262)
Q Consensus       164 g~i~~~d~~~-------------------------~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~  218 (262)
                      |.|++||++.                         .....+++++.++.|++||+.+++++..+.+              
T Consensus       267 g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~--------------  332 (408)
T 4a11_B          267 NRMRLWNSSNGENTLVNYGKVCNNSKKGLKFTVSCGCSSEFVFVPYGSTIAVYTVYSGEQITMLKG--------------  332 (408)
T ss_dssp             SCEEEEETTTCCBCCCCCCCCCCCCSSCCCCEECCSSSSCEEEEEETTEEEEEETTTCCEEEEECC--------------
T ss_pred             CeEEEEECCCCccceeccccccccccccceeEEecCCCceEEEEecCCEEEEEECcCCcceeeecc--------------
Confidence            9999999876                         2245677788899999999999999999887              


Q ss_pred             CCCeeEEccccceEEEEEcCCCCeEEEeeecCCCcEEEEeecc
Q 042146          219 TNGKYIVSHRDPVISVASHPAKNIIASGALDNDRTMKIWTQEK  261 (262)
Q Consensus       219 ~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~d~d~~i~iw~~~~  261 (262)
                              |...|++++|+|++++|++++  .||.|++|+++.
T Consensus       333 --------~~~~v~~~~~s~~~~~l~s~~--~dg~i~iw~~~~  365 (408)
T 4a11_B          333 --------HYKTVDCCVFQSNFQELYSGS--RDCNILAWVPSL  365 (408)
T ss_dssp             --------CSSCEEEEEEETTTTEEEEEE--TTSCEEEEEECC
T ss_pred             --------CCCeEEEEEEcCCCCEEEEEC--CCCeEEEEeCCC
Confidence                    889999999999999999999  899999999864

>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}

Probab=100.00  E-value=9.5e-36  Score=238.83  Aligned_cols=235  Identities=18%  Similarity=0.298  Sum_probs=189.0

Q ss_pred             CCCCceeeecccc-----cceecccCcCceEEEEEccCCCeEEEecCCCeEEEeecCCCCC----CC--CCCCCCCcccc
Q 042146            2 SSDRSLESFRPYT-----LTQTLNGHLRAVSYVKFSHDGRLLTSSSAEKTLLTYSLSSISN----FD--STPPSPLQKFT   70 (262)
Q Consensus         2 s~d~~i~~~~~~~-----~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~----~~--~~~~~~~~~~~   70 (262)
                      +.|++|+.|+...     ++..+ .|...|.+++|+|++++|++++.||.|++|++.....    ..  ......+..+.
T Consensus        42 ~~d~~v~iw~~~~~~~~~~~~~~-~~~~~v~~~~~s~~~~~l~~~~~dg~v~vw~~~~~~~~~~~~~~~~~h~~~v~~~~  120 (416)
T 2pm9_A           42 STDSSLELWSLLAADSEKPIASL-QVDSKFNDLDWSHNNKIIAGALDNGSLELYSTNEANNAINSMARFSNHSSSVKTVK  120 (416)
T ss_dssp             CCCCCCEEEESSSGGGCSCSCCC-CCSSCEEEEEECSSSSCEEEEESSSCEEEECCSSTTSCCCEEEECCCSSSCCCEEE
T ss_pred             CCCCeEEEEEccCCCCCcEEEEE-ecCCceEEEEECCCCCeEEEEccCCeEEEeecccccccccchhhccCCccceEEEE
Confidence            5788999996432     33334 5899999999999999999999999999999876211    00  00111111111


Q ss_pred             CCc---ccc---ccceeEEEEecCCCc------cce---ecccCCcceEEEEEeCC-CCEEEeecCCCeEEEEECCCCee
Q 042146           71 GHE---QGI---SDLATIRLWDVPTAT------SLK---TLIGHTNYVFCINFNPQ-SNRIVSDTFNETIRIWDIKTGKC  134 (262)
Q Consensus        71 ~~~---~~v---~~~~~i~v~d~~~~~------~~~---~~~~~~~~v~~~~~~~~-~~~l~~~~~dg~i~vwd~~~~~~  134 (262)
                      ...   ..+   ...+.|++||+.+++      ...   ....|...|.+++|+|+ +.++++++.||.|++||+++++.
T Consensus       121 ~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~  200 (416)
T 2pm9_A          121 FNAKQDNVLASGGNNGEIFIWDMNKCTESPSNYTPLTPGQSMSSVDEVISLAWNQSLAHVFASAGSSNFASIWDLKAKKE  200 (416)
T ss_dssp             ECSSSTTBEEEECSSSCEEBCBTTTTSSCTTTCCCBCCCCSCCSSCCCCEEEECSSCTTEEEEESSSSCEEEEETTTTEE
T ss_pred             EcCCCCCEEEEEcCCCeEEEEECCCCccccccccccccccccCCCCCeeEEEeCCCCCcEEEEEcCCCCEEEEECCCCCc
Confidence            111   111   112389999998876      333   34678899999999998 78999999999999999999999


Q ss_pred             eeeeecC------CCCeeeEEEccCC-CEEEEEeCCC---eEEEEeCCC----------------------C-CccEEEE
Q 042146          135 LKVLPAH------SDPVTAIDFNRDG-TMIVTSSYDG---LYRILDAST----------------------P-NGKFILV  181 (262)
Q Consensus       135 ~~~~~~~------~~~v~~~~~~~~~-~~l~~~~~dg---~i~~~d~~~----------------------~-~~~~l~~  181 (262)
                      +..+..+      ...|.+++|+|++ .++++++.|+   .|++||++.                      | ++++|++
T Consensus       201 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~~~~i~~~d~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~l~s  280 (416)
T 2pm9_A          201 VIHLSYTSPNSGIKQQLSVVEWHPKNSTRVATATGSDNDPSILIWDLRNANTPLQTLNQGHQKGILSLDWCHQDEHLLLS  280 (416)
T ss_dssp             EEEECCCCCSSCCCCCEEEEEECSSCTTEEEEEECCSSSCCCCEEETTSTTSCSBCCCSCCSSCEEEEEECSSCSSCEEE
T ss_pred             ceEEeccccccccCCceEEEEECCCCCCEEEEEECCCCCceEEEEeCCCCCCCcEEeecCccCceeEEEeCCCCCCeEEE
Confidence            8888776      7899999999987 6899999998   999999865                      5 7899999


Q ss_pred             EcCCCeEEEEecCCCceeeEEeccCCceeEEEEEEecCCCeeEEccccceEEEEEcCCC-CeEEEeeecCCCcEEEEeec
Q 042146          182 GTLDNTLRLWNYSTRKILKTYSGYTNSKYCISSTFSVTNGKYIVSHRDPVISVASHPAK-NIIASGALDNDRTMKIWTQE  260 (262)
Q Consensus       182 ~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~-~~l~~~~~d~d~~i~iw~~~  260 (262)
                      ++.||.|++||+++++++..+..                      |...|.+++|+|++ .+|++++  .|+.|++|+++
T Consensus       281 ~~~dg~v~~wd~~~~~~~~~~~~----------------------~~~~v~~~~~s~~~~~~l~s~~--~d~~i~iw~~~  336 (416)
T 2pm9_A          281 SGRDNTVLLWNPESAEQLSQFPA----------------------RGNWCFKTKFAPEAPDLFACAS--FDNKIEVQTLQ  336 (416)
T ss_dssp             EESSSEEEEECSSSCCEEEEEEC----------------------SSSCCCCEEECTTCTTEEEECC--SSSEEEEEESC
T ss_pred             EeCCCCEEEeeCCCCccceeecC----------------------CCCceEEEEECCCCCCEEEEEe--cCCcEEEEEcc
Confidence            99999999999999999998887                      88899999999999 8999999  89999999986


Q ss_pred             c
Q 042146          261 K  261 (262)
Q Consensus       261 ~  261 (262)
                      .
T Consensus       337 ~  337 (416)
T 2pm9_A          337 N  337 (416)
T ss_dssp             C
T ss_pred             C
Confidence            4

>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*

Probab=100.00  E-value=2.7e-36  Score=243.76  Aligned_cols=246  Identities=16%  Similarity=0.193  Sum_probs=177.2

Q ss_pred             ccccceecccCcCceEEEEEcc-CCCeEEEecCCCeEEEeecCCCCCCCC----CCCCCCccccCC--c-ccc---ccce
Q 042146           12 PYTLTQTLNGHLRAVSYVKFSH-DGRLLTSSSAEKTLLTYSLSSISNFDS----TPPSPLQKFTGH--E-QGI---SDLA   80 (262)
Q Consensus        12 ~~~~~~~~~~h~~~v~~~~~~~-~~~~l~s~~~d~~i~iw~~~~~~~~~~----~~~~~~~~~~~~--~-~~v---~~~~   80 (262)
                      .+.+.....+|...|+|++|+| ++++||+|+.||.|+|||+........    .....+..+..+  . ..+   ...+
T Consensus       108 ~~~~~~~~~~~~~~V~~l~~~P~~~~~lasGs~dg~i~lWd~~~~~~~~~~~~~gH~~~V~~l~f~p~~~~~l~s~s~D~  187 (435)
T 4e54_B          108 SYRILQKAAPFDRRATSLAWHPTHPSTVAVGSKGGDIMLWNFGIKDKPTFIKGIGAGGSITGLKFNPLNTNQFYASSMEG  187 (435)
T ss_dssp             TTTSCCEEEECSSCEEEEEECSSCTTCEEEEETTSCEEEECSSCCSCCEEECCCSSSCCCCEEEECSSCTTEEEEECSSS
T ss_pred             ceeecccCCCCCCCEEEEEEeCCCCCEEEEEeCCCEEEEEECCCCCceeEEEccCCCCCEEEEEEeCCCCCEEEEEeCCC
Confidence            4455666778999999999999 567999999999999999865432110    111122222211  1 111   1233


Q ss_pred             eEEEEecCCCccceecc--cCCcceEEEEEeCCCCEEEeecCCCeEEEEECCCCeeeeeeecCCCCeeeEEEccCCC-EE
Q 042146           81 TIRLWDVPTATSLKTLI--GHTNYVFCINFNPQSNRIVSDTFNETIRIWDIKTGKCLKVLPAHSDPVTAIDFNRDGT-MI  157 (262)
Q Consensus        81 ~i~v~d~~~~~~~~~~~--~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~-~l  157 (262)
                      .|++||++++.......  .+...+.+++|+|++++|++|+.||.|++||++ ++.+..+.+|...|.+++|+|++. +|
T Consensus       188 ~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~dg~i~~wd~~-~~~~~~~~~h~~~v~~v~~~p~~~~~~  266 (435)
T 4e54_B          188 TTRLQDFKGNILRVFASSDTINIWFCSLDVSASSRMVVTGDNVGNVILLNMD-GKELWNLRMHKKKVTHVALNPCCDWFL  266 (435)
T ss_dssp             CEEEEETTSCEEEEEECCSSCSCCCCCEEEETTTTEEEEECSSSBEEEEESS-SCBCCCSBCCSSCEEEEEECTTCSSEE
T ss_pred             EEEEeeccCCceeEEeccCCCCccEEEEEECCCCCEEEEEeCCCcEeeeccC-cceeEEEecccceEEeeeecCCCceEE
Confidence            89999997654433222  334568899999999999999999999999986 456778889999999999999876 78


Q ss_pred             EEEeCCCeEEEEeCCC-----------------------CCccEEEEEcCCCeEEEEecCCCceeeEEeccCCce----e
Q 042146          158 VTSSYDGLYRILDAST-----------------------PNGKFILVGTLDNTLRLWNYSTRKILKTYSGYTNSK----Y  210 (262)
Q Consensus       158 ~~~~~dg~i~~~d~~~-----------------------~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~----~  210 (262)
                      ++++.|+.|++||++.                       |++.+|++++.||.|++||+++++....+..+....    .
T Consensus       267 ~s~s~d~~v~iwd~~~~~~~~~~~~~~~h~~~v~~~~~spdg~~l~s~~~D~~i~iwd~~~~~~~~~~~~~~~~~~~~~~  346 (435)
T 4e54_B          267 ATASVDQTVKIWDLRQVRGKASFLYSLPHRHPVNAACFSPDGARLLTTDQKSEIRVYSASQWDCPLGLIPHPHRHFQHLT  346 (435)
T ss_dssp             EEEETTSBCCEEETTTCCSSSCCSBCCBCSSCEEECCBCTTSSEEEEEESSSCEEEEESSSSSSEEEECCCCCCCCSSSC
T ss_pred             EEecCcceeeEEecccccccceEEEeeeccccccceeECCCCCeeEEEcCCCEEEEEECCCCccceEEecccccccccce
Confidence            8999999999999875                       789999999999999999999988776665443210    0


Q ss_pred             -----------EEEEE--------------------EecCCCeeE----EccccceEEE-EEcCCCCeEEEeeecCCCcE
Q 042146          211 -----------CISST--------------------FSVTNGKYI----VSHRDPVISV-ASHPAKNIIASGALDNDRTM  254 (262)
Q Consensus       211 -----------~~~~~--------------------~~~~~~~~~----~~~~~~v~~~-~~~p~~~~l~~~~~d~d~~i  254 (262)
                                 .+...                    |....+..+    .+|...|.++ +|+|++.+|++|+   |+.|
T Consensus       347 ~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~i~iwd~~~g~~~~~l~~~~~~~v~s~~~fspdg~~lasg~---d~~i  423 (435)
T 4e54_B          347 PIKAAWHPRYNLIVVGRYPDPNFKSCTPYELRTIDVFDGNSGKMMCQLYDPESSGISSLNEFNPMGDTLASAM---GYHI  423 (435)
T ss_dssp             CCBCEECSSSSCEEEECCCCTTSCCSSTTCCCCEEEECSSSCCEEEEECCSSCCCCCCEEEECTTSSCEEEEC---SSEE
T ss_pred             eEEEEEcCCCCEEEEEEcCCCCeEEEEecCCCEEEEEECCCCcEEEEEeCCCCCcEEEEEEECCCCCEEEEEc---CCcE
Confidence                       01111                    111122221    1366778887 6999999999875   6799


Q ss_pred             EEEeecc
Q 042146          255 KIWTQEK  261 (262)
Q Consensus       255 ~iw~~~~  261 (262)
                      +||++++
T Consensus       424 ~iW~~~~  430 (435)
T 4e54_B          424 LIWSQQE  430 (435)
T ss_dssp             EECCCC-
T ss_pred             EEEECCc
Confidence            9999864

>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}

Probab=100.00  E-value=1.2e-34  Score=241.78  Aligned_cols=244  Identities=30%  Similarity=0.537  Sum_probs=200.8

Q ss_pred             CCCCceeeec-ccccceecccCcCceEEEEEccCCCeEEEecCCCeEEEeecCCCCCCCCCCCCCCccccCCccccc---
Q 042146            2 SSDRSLESFR-PYTLTQTLNGHLRAVSYVKFSHDGRLLTSSSAEKTLLTYSLSSISNFDSTPPSPLQKFTGHEQGIS---   77 (262)
Q Consensus         2 s~d~~i~~~~-~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~---   77 (262)
                      +.|+++..|+ ..+.+..+.+|..+|.+++|+|++++|++++.|+.|++|+.....         ...+.+|...+.   
T Consensus       240 ~~d~~i~~w~~~~~~~~~~~~~~~~v~~v~~~~d~~~l~~~~~d~~i~~w~~~~~~---------~~~~~~h~~~v~~~~  310 (577)
T 2ymu_A          240 SDDKTVKLWNRNGQLLQTLTGHSSSVNGVAFRPDGQTIASASDDKTVKLWNRNGQL---------LQTLTGHSSSVWGVA  310 (577)
T ss_dssp             ETTSCEEEECTTSCEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTSCE---------EEEECCCSSCEEEEE
T ss_pred             eCCCEEEEEeCCCCEEEEEecCCCCEEEEEEcCCCCEEEEEeCCCEEEEEeCCCcE---------EEEEecCCCCeEEEE
Confidence            3578888886 456788899999999999999999999999999999999865421         112222222222   


Q ss_pred             ------------cceeEEEEecCCCccceecccCCcceEEEEEeCCCCEEEeecCCCeEEEEECCCCeeeeeeecCCCCe
Q 042146           78 ------------DLATIRLWDVPTATSLKTLIGHTNYVFCINFNPQSNRIVSDTFNETIRIWDIKTGKCLKVLPAHSDPV  145 (262)
Q Consensus        78 ------------~~~~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~v  145 (262)
                                  ..+.|++||.. ++.+..+.+|...+.+++|+|+++++++++.||.|++||. +++.+..+..|...|
T Consensus       311 ~~~~~~~l~t~~~d~~i~~w~~~-~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~v~~~~~-~~~~~~~~~~~~~~v  388 (577)
T 2ymu_A          311 FSPDGQTIASASDDKTVKLWNRN-GQHLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNR-NGQLLQTLTGHSSSV  388 (577)
T ss_dssp             ECTTSSEEEEEETTSCEEEEETT-SCEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEET-TCCEEEEEECCSSCE
T ss_pred             ECCCCCEEEEEeCCCeEEEEeCC-CCeeEEEeCCCCCEEEEEECCCCCEEEEEeCCCEEEEEcC-CCCEEEEecCCCCCe
Confidence                        12379999975 4556778889999999999999999999999999999995 577888889999999


Q ss_pred             eeEEEccCCCEEEEEeCCCeEEEEeCCC-------------------CCccEEEEEcCCCeEEEEecCCCceeeEEeccC
Q 042146          146 TAIDFNRDGTMIVTSSYDGLYRILDAST-------------------PNGKFILVGTLDNTLRLWNYSTRKILKTYSGYT  206 (262)
Q Consensus       146 ~~~~~~~~~~~l~~~~~dg~i~~~d~~~-------------------~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~  206 (262)
                      .+++|+|++++|++++.|+.|++||...                   |++++|++++.|+.|++||. +++.+..+.+|.
T Consensus       389 ~~~~~s~dg~~l~~~~~d~~v~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~d~~v~~w~~-~~~~~~~~~~~~  467 (577)
T 2ymu_A          389 RGVAFSPDGQTIASASDDKTVKLWNRNGQLLQTLTGHSSSVWGVAFSPDDQTIASASDDKTVKLWNR-NGQLLQTLTGHS  467 (577)
T ss_dssp             EEEEECTTSSCEEEEETTSEEEEECTTCCEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEET-TSCEEEEEECCS
T ss_pred             EEEEECCCCCEEEEEeCCCEEEEEeCCCCEEEEecCCCCCeEEEEECCCCCEEEEEcCCCEEEEEEC-CCCEEEEEcCCC
Confidence            9999999999999999999999999754                   78999999999999999996 578888888888


Q ss_pred             CceeEEEEEEecCCCee---------------------EEccccceEEEEEcCCCCeEEEeeecCCCcEEEEeecc
Q 042146          207 NSKYCISSTFSVTNGKY---------------------IVSHRDPVISVASHPAKNIIASGALDNDRTMKIWTQEK  261 (262)
Q Consensus       207 ~~~~~~~~~~~~~~~~~---------------------~~~~~~~v~~~~~~p~~~~l~~~~~d~d~~i~iw~~~~  261 (262)
                      ..+.++.+  ++....+                     +.+|...|++++|+|++++|++++  .||.|++||.+.
T Consensus       468 ~~v~~~~~--spd~~~las~~~d~~i~iw~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~~--~dg~v~lwd~~~  539 (577)
T 2ymu_A          468 SSVRGVAF--SPDGQTIASASDDKTVKLWNRNGQLLQTLTGHSSSVRGVAFSPDGQTIASAS--DDKTVKLWNRNG  539 (577)
T ss_dssp             SCEEEEEE--CTTSCEEEEEETTSEEEEEETTSCEEEEEECCSSCEEEEEECTTSSCEEEEE--TTSEEEEECTTS
T ss_pred             CCEEEEEE--cCCCCEEEEEeCCCEEEEEcCCCCEEEEEeCCCCCEEEEEEcCCCCEEEEEE--CcCEEEEEeCCC
Confidence            77766543  3222222                     233889999999999999999999  899999999753

>4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens}

Probab=100.00  E-value=3.1e-35  Score=227.65  Aligned_cols=227  Identities=22%  Similarity=0.371  Sum_probs=182.7

Q ss_pred             CCCceeeec--ccccceec--ccCcCceEEEEEccCCCeEEEecCCCeEEEeecCCCCCCCCCCCCCCccccCCcccccc
Q 042146            3 SDRSLESFR--PYTLTQTL--NGHLRAVSYVKFSHDGRLLTSSSAEKTLLTYSLSSISNFDSTPPSPLQKFTGHEQGISD   78 (262)
Q Consensus         3 ~d~~i~~~~--~~~~~~~~--~~h~~~v~~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~   78 (262)
                      .|++|+.|+  +.+.++.+  .+|...|++++|+|++++|++|+.||+|++|+++..+.        ...+.+|...+..
T Consensus        43 ~D~tV~iWd~~tg~~~~~~~~~~~~~~V~~v~~~~~~~~l~sgs~Dg~v~iw~~~~~~~--------~~~~~~h~~~~~~  114 (318)
T 4ggc_A           43 LDNSVYLWSASSGDILQLLQMEQPGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQQQKR--------LRNMTSHSARVGS  114 (318)
T ss_dssp             ETTEEEEEETTTCCEEEEEECCSTTCCEEEEEECTTSSEEEEEETTSEEEEEETTTTEE--------EEEEECCSSCEEE
T ss_pred             eCCEEEEEECCCCCEEEEEEecCCCCeEEEEEECCCCCEEEEEECCCcEEEeecCCcee--------EEEecCccceEEE
Confidence            488888886  45555555  57888899999999999999999999999999876432        2223333332221


Q ss_pred             -------------ceeEEEEecCCCc-cceecccCCcceEEEEEeCCCCEEEeecCCCeEEEEECCCCee----eeeeec
Q 042146           79 -------------LATIRLWDVPTAT-SLKTLIGHTNYVFCINFNPQSNRIVSDTFNETIRIWDIKTGKC----LKVLPA  140 (262)
Q Consensus        79 -------------~~~i~v~d~~~~~-~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~----~~~~~~  140 (262)
                                   ...+++|+..... .+..+.+|...+..+.++++++++++++.||.|++||+++++.    ......
T Consensus       115 ~~~~~~~l~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~  194 (318)
T 4ggc_A          115 LSWNSYILSSGSRSGHIHHHDVRVAEHHVATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQ  194 (318)
T ss_dssp             EEEETTEEEEEETTSEEEEEETTSSSCEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEESSCBTTBSCCSEEECC
T ss_pred             eecCCCEEEEEecCCceEeeecCCCceeEEEEcCccCceEEEEEcCCCCEEEEEecCcceeEEECCCCcccccceeeecc
Confidence                         2267888877654 4566788999999999999999999999999999999987653    344556


Q ss_pred             CCCCeeeEEEccCCCE---EEEEeCCCeEEEEeCCC-------------------CCccEEEEE--cCCCeEEEEecCCC
Q 042146          141 HSDPVTAIDFNRDGTM---IVTSSYDGLYRILDAST-------------------PNGKFILVG--TLDNTLRLWNYSTR  196 (262)
Q Consensus       141 ~~~~v~~~~~~~~~~~---l~~~~~dg~i~~~d~~~-------------------~~~~~l~~~--~~dg~i~i~d~~~~  196 (262)
                      +.+.|.+++++|++..   +++++.++.|++||.+.                   ++++.++++  +.|+.|++||++++
T Consensus       195 ~~~~v~~~~~~~~~~~~~~~~~~~~~~~i~lwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~sg~~d~~i~iwd~~~~  274 (318)
T 4ggc_A          195 HQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLSAVDAHSQVCSILWSPHYKELISGHGFAQNQLVIWKYPTM  274 (318)
T ss_dssp             CCSCEEEEEECTTSTTEEEEEECTTTCEEEEEETTTCCEEEEEECSSCEEEEEEETTTTEEEEEECTTTCCEEEEETTTC
T ss_pred             cCCceEEEEecCCCCcEEEEEecCCCCEEEEEecccccccccccceeeeeeeeecccccceEEEEEcCCCEEEEEECCCC
Confidence            7889999999996653   34567889999999887                   566666554  48999999999999


Q ss_pred             ceeeEEeccCCceeEEEEEEecCCCeeEEccccceEEEEEcCCCCeEEEeeecCCCcEEEEeecc
Q 042146          197 KILKTYSGYTNSKYCISSTFSVTNGKYIVSHRDPVISVASHPAKNIIASGALDNDRTMKIWTQEK  261 (262)
Q Consensus       197 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~d~d~~i~iw~~~~  261 (262)
                      +++..+.+                      |.+.|++++|+|++++|++||  .||+|+|||+.+
T Consensus       275 ~~~~~l~g----------------------H~~~V~~l~~spdg~~l~S~s--~D~~v~iWd~~~  315 (318)
T 4ggc_A          275 AKVAELKG----------------------HTSRVLSLTMSPDGATVASAA--ADETLRLWRCFE  315 (318)
T ss_dssp             CEEEEECC----------------------CSSCEEEEEECTTSSCEEEEE--TTTEEEEECCSC
T ss_pred             cEEEEEcC----------------------CCCCEEEEEEcCCCCEEEEEe--cCCeEEEEECCC
Confidence            99999987                      899999999999999999999  899999999854

>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae}

Probab=100.00  E-value=2.6e-36  Score=243.91  Aligned_cols=254  Identities=14%  Similarity=0.222  Sum_probs=191.6

Q ss_pred             CCCCceeeecccc--------cceecccCcCceEEEEEccCCCeEEEecCCCeEEEeecCC---CCCCCCCCCCCCcccc
Q 042146            2 SSDRSLESFRPYT--------LTQTLNGHLRAVSYVKFSHDGRLLTSSSAEKTLLTYSLSS---ISNFDSTPPSPLQKFT   70 (262)
Q Consensus         2 s~d~~i~~~~~~~--------~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~iw~~~~---~~~~~~~~~~~~~~~~   70 (262)
                      +.|++|+.|+...        ....+ +|.++|.+++|+|++++|++++.||+|++||++.   ...........+..+.
T Consensus        83 s~dg~v~vwd~~~~~~~~~~~~~~~~-~h~~~v~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~i~~~~  161 (437)
T 3gre_A           83 SDQGVIKIWNLKEIIVGEVYSSSLTY-DCSSTVTQITMIPNFDAFAVSSKDGQIIVLKVNHYQQESEVKFLNCECIRKIN  161 (437)
T ss_dssp             ETTSEEEEEEHHHHHTTCCCSCSEEE-ECSSCEEEEEECTTSSEEEEEETTSEEEEEEEEEEEETTEEEEEEEEEEEEEE
T ss_pred             cCCceEEEeECcccccCcccceeeec-cCCCCEEEEEEeCCCCEEEEEeCCCEEEEEEeccccCCceeeccccceeEEEE
Confidence            4689999997433        23333 5999999999999999999999999999999852   1111000000111111


Q ss_pred             CC-----------------ccc----cccceeEEEEecCCCccceeccc--CCcceEEEEEeCCCCEEEeecCCCeEEEE
Q 042146           71 GH-----------------EQG----ISDLATIRLWDVPTATSLKTLIG--HTNYVFCINFNPQSNRIVSDTFNETIRIW  127 (262)
Q Consensus        71 ~~-----------------~~~----v~~~~~i~v~d~~~~~~~~~~~~--~~~~v~~~~~~~~~~~l~~~~~dg~i~vw  127 (262)
                      .+                 ...    ....+.|++||+++++.+..+..  |...|++++|+|++++|++|+.||.|++|
T Consensus       162 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~iw  241 (437)
T 3gre_A          162 LKNFGKNEYAVRMRAFVNEEKSLLVALTNLSRVIIFDIRTLERLQIIENSPRHGAVSSICIDEECCVLILGTTRGIIDIW  241 (437)
T ss_dssp             GGGGSSCCCEEEEEEEECSSCEEEEEEETTSEEEEEETTTCCEEEEEECCGGGCCEEEEEECTTSCEEEEEETTSCEEEE
T ss_pred             ccCcccccCceEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCeeeEEEccCCCCCceEEEEECCCCCEEEEEcCCCeEEEE
Confidence            00                 010    11223899999999999998887  88999999999999999999999999999


Q ss_pred             ECCCCeeeeeee-cCCCCeeeEEEcc----CCCEEEEEeCCCeEEEEeCCC--------------------C--------
Q 042146          128 DIKTGKCLKVLP-AHSDPVTAIDFNR----DGTMIVTSSYDGLYRILDAST--------------------P--------  174 (262)
Q Consensus       128 d~~~~~~~~~~~-~~~~~v~~~~~~~----~~~~l~~~~~dg~i~~~d~~~--------------------~--------  174 (262)
                      |+++++++..+. .|..+|.+++|+|    ++.+|++++.||.|++||++.                    +        
T Consensus       242 d~~~~~~~~~~~~~~~~~v~~~~~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~  321 (437)
T 3gre_A          242 DIRFNVLIRSWSFGDHAPITHVEVCQFYGKNSVIVVGGSSKTFLTIWNFVKGHCQYAFINSDEQPSMEHFLPIEKGLEEL  321 (437)
T ss_dssp             ETTTTEEEEEEBCTTCEEEEEEEECTTTCTTEEEEEEESTTEEEEEEETTTTEEEEEEESSSSCCCGGGGSCBCSSGGGC
T ss_pred             EcCCccEEEEEecCCCCceEEEEeccccCCCccEEEEEcCCCcEEEEEcCCCcEEEEEEcCCCCCccceecccccccccc
Confidence            999999988876 6788999996654    677999999999999999975                    1        


Q ss_pred             -----------------CccEEEEEcCCCeEEEEecCCCceeeEEeccCCceeEEEE-EEecCCCeeEEc----------
Q 042146          175 -----------------NGKFILVGTLDNTLRLWNYSTRKILKTYSGYTNSKYCISS-TFSVTNGKYIVS----------  226 (262)
Q Consensus       175 -----------------~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~----------  226 (262)
                                       ++++|++|+.||.|++||+++++....+.++......... .+.......+..          
T Consensus       322 ~~~~~~~~~~v~~l~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  401 (437)
T 3gre_A          322 NFCGIRSLNALSTISVSNDKILLTDEATSSIVMFSLNELSSSKAVISPSRFSDVFIPTQVTANLTMLLRKMKRTSTHSVD  401 (437)
T ss_dssp             CCCCCCSGGGGCCEEEETTEEEEEEGGGTEEEEEETTCGGGCEEEECC--CCCEEEEEEEETTEEEEEEECC--------
T ss_pred             eecccccCCceEEEEECCceEEEecCCCCeEEEEECCCcccceEEecccccCceEEEEEeecceEEEEEecccccccccC
Confidence                             1378999999999999999999999999876543333322 222222222222          


Q ss_pred             ----cccceEEEEEcCC--CCeEEEeeecCCCcEEEEe
Q 042146          227 ----HRDPVISVASHPA--KNIIASGALDNDRTMKIWT  258 (262)
Q Consensus       227 ----~~~~v~~~~~~p~--~~~l~~~~~d~d~~i~iw~  258 (262)
                          |...|++++|+++  +.+|++|+  .||.|+||+
T Consensus       402 ~~~~h~~~I~~i~~~~~~~~~~l~s~~--~dG~I~iw~  437 (437)
T 3gre_A          402 DSLYHHDIINSISTCEVDETPLLVACD--NSGLIGIFQ  437 (437)
T ss_dssp             -----CCCEEEEEEEESSSSEEEEEEE--TTSCEEEEC
T ss_pred             cccccccceeeEeeeccCCceEEEEEc--CCceEEEeC
Confidence                8999999999998  78999999  999999995

>4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A

Probab=100.00  E-value=1.1e-35  Score=234.82  Aligned_cols=214  Identities=14%  Similarity=0.159  Sum_probs=152.9

Q ss_pred             cCceEEEEEccCCCeEEEecCC-------CeEEEeecCCCCCCCCCCCC--CCccccCCccccc----------------
Q 042146           23 LRAVSYVKFSHDGRLLTSSSAE-------KTLLTYSLSSISNFDSTPPS--PLQKFTGHEQGIS----------------   77 (262)
Q Consensus        23 ~~~v~~~~~~~~~~~l~s~~~d-------~~i~iw~~~~~~~~~~~~~~--~~~~~~~~~~~v~----------------   77 (262)
                      ..||.|++|+||+++|++|+.+       +.|++|+++...........  ....+..+...+.                
T Consensus        14 g~PV~sv~fs~dg~~l~sGGg~~~~sGi~N~i~~w~~~~~~~~~~~~~~~~~~~~l~~~~~~v~s~~~~~~~~~~g~~~~   93 (365)
T 4h5i_A           14 GYPAYGAKFLNNDTLLVAGGGGEGNNGIPNKLTVLRVDPTKDTEKEQFHILSEFALEDNDDSPTAIDASKGIILVGCNEN   93 (365)
T ss_dssp             SSCEEEEEEEETTEEEEEEECCSSSSSCCEEEEEEEECTTSSSHHHHEEEEEEEECCTTSCCCCEEEEETTEEEEECCCC
T ss_pred             CCCEEEEEEeCCCcEEEEECCCccccCCCCEEEEEEEcCCCcceeeeeeeeeEEEccCCCCceEEEEeCCCEEEEEECCC
Confidence            4689999999999999998754       36999998653221100000  0001111111111                


Q ss_pred             --------cceeEEEEecCCCcccee---------cccCCcceEEEEEeCCCCEEE--eecCCCeEEEEECCCCeeeeee
Q 042146           78 --------DLATIRLWDVPTATSLKT---------LIGHTNYVFCINFNPQSNRIV--SDTFNETIRIWDIKTGKCLKVL  138 (262)
Q Consensus        78 --------~~~~i~v~d~~~~~~~~~---------~~~~~~~v~~~~~~~~~~~l~--~~~~dg~i~vwd~~~~~~~~~~  138 (262)
                              ....+++|++........         ...+...+.+++|+|||++++  +++.|++|++||+++++++..+
T Consensus        94 ~~~l~s~~~d~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~fSpDg~~la~as~~~d~~i~iwd~~~~~~~~~~  173 (365)
T 4h5i_A           94 STKITQGKGNKHLRKFKYDKVNDQLEFLTSVDFDASTNADDYTKLVYISREGTVAAIASSKVPAIMRIIDPSDLTEKFEI  173 (365)
T ss_dssp             HHHHHHTSCCCCEEEEEEETTTTEEEEEEEECSSCCCCTTCCEEEEEECTTSSCEEEEESCSSCEEEEEETTTTEEEEEE
T ss_pred             ccEEEEecCCCcEEEEEecCCCceEEEeeeeceeecCCcccCEEEEEEcCCCCEEEEEECCCCCEEEEeECCCCcEEEEe
Confidence                    122789999876543211         123445689999999999976  4557899999999999998888


Q ss_pred             ecCCCCeeeEEEccCCCEEEEEeCCCeEEEEeCCC---------------------------------------------
Q 042146          139 PAHSDPVTAIDFNRDGTMIVTSSYDGLYRILDAST---------------------------------------------  173 (262)
Q Consensus       139 ~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~d~~~---------------------------------------------  173 (262)
                      . |...|.+++|+|+|+++++++.++.+.+|....                                             
T Consensus       174 ~-~~~~V~~v~fspdg~~l~s~s~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~fspdg~~l~~~s~d~~~~~~i~~~~~  252 (365)
T 4h5i_A          174 E-TRGEVKDLHFSTDGKVVAYITGSSLEVISTVTGSCIARKTDFDKNWSLSKINFIADDTVLIAASLKKGKGIVLTKISI  252 (365)
T ss_dssp             E-CSSCCCEEEECTTSSEEEEECSSCEEEEETTTCCEEEEECCCCTTEEEEEEEEEETTEEEEEEEESSSCCEEEEEEEE
T ss_pred             C-CCCceEEEEEccCCceEEeccceeEEEEEeccCcceeeeecCCCCCCEEEEEEcCCCCEEEEEecCCcceeEEeeccc
Confidence            5 778899999999999999988665544443322                                             


Q ss_pred             --------------------------CCccEEEEEcCCCeEEEEecCCCceeeEE-eccCCceeEEEEEEecCCCeeEEc
Q 042146          174 --------------------------PNGKFILVGTLDNTLRLWNYSTRKILKTY-SGYTNSKYCISSTFSVTNGKYIVS  226 (262)
Q Consensus       174 --------------------------~~~~~l~~~~~dg~i~i~d~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~  226 (262)
                                                |++++|++|+.|+.|+|||+++++++..+ .+                      
T Consensus       253 ~~~~~~~~~~~~~~~~~~~V~~~~~Spdg~~lasgs~D~~V~iwd~~~~~~~~~~~~g----------------------  310 (365)
T 4h5i_A          253 KSGNTSVLRSKQVTNRFKGITSMDVDMKGELAVLASNDNSIALVKLKDLSMSKIFKQA----------------------  310 (365)
T ss_dssp             ETTEEEEEEEEEEESSCSCEEEEEECTTSCEEEEEETTSCEEEEETTTTEEEEEETTS----------------------
T ss_pred             ccceecceeeeeecCCCCCeEeEEECCCCCceEEEcCCCEEEEEECCCCcEEEEecCc----------------------
Confidence                                      56667777777777777777766666654 33                      


Q ss_pred             cccceEEEEEcCCCCeEEEeeecCCCcEEEEeecc
Q 042146          227 HRDPVISVASHPAKNIIASGALDNDRTMKIWTQEK  261 (262)
Q Consensus       227 ~~~~v~~~~~~p~~~~l~~~~~d~d~~i~iw~~~~  261 (262)
                      |..+|++++|+|++++||++|  .|++|+||++++
T Consensus       311 H~~~V~~v~fSpdg~~laS~S--~D~tvrvw~ip~  343 (365)
T 4h5i_A          311 HSFAITEVTISPDSTYVASVS--AANTIHIIKLPL  343 (365)
T ss_dssp             SSSCEEEEEECTTSCEEEEEE--TTSEEEEEECCT
T ss_pred             ccCCEEEEEECCCCCEEEEEe--CCCeEEEEEcCC
Confidence            899999999999999999999  899999999864

>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*

Probab=100.00  E-value=1.2e-35  Score=236.05  Aligned_cols=235  Identities=17%  Similarity=0.228  Sum_probs=182.4

Q ss_pred             CCCCceeeeccc--ccceec--ccCcCceEEEEEcc-CCCeEEEecCCCeEEEeecCCCCCCCCCC----CCCCcccc--
Q 042146            2 SSDRSLESFRPY--TLTQTL--NGHLRAVSYVKFSH-DGRLLTSSSAEKTLLTYSLSSISNFDSTP----PSPLQKFT--   70 (262)
Q Consensus         2 s~d~~i~~~~~~--~~~~~~--~~h~~~v~~~~~~~-~~~~l~s~~~d~~i~iw~~~~~~~~~~~~----~~~~~~~~--   70 (262)
                      +.|++|..|+..  +....+  .+|...|.+++|+| ++++|++++.|+.|++||+..........    ...+..+.  
T Consensus        93 ~~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~  172 (383)
T 3ei3_B           93 SKGGDIILWDYDVQNKTSFIQGMGPGDAITGMKFNQFNTNQLFVSSIRGATTLRDFSGSVIQVFAKTDSWDYWYCCVDVS  172 (383)
T ss_dssp             EBTSCEEEEETTSTTCEEEECCCSTTCBEEEEEEETTEEEEEEEEETTTEEEEEETTSCEEEEEECCCCSSCCEEEEEEE
T ss_pred             cCCCeEEEEeCCCcccceeeecCCcCCceeEEEeCCCCCCEEEEEeCCCEEEEEECCCCceEEEeccCCCCCCeEEEEEC
Confidence            357888888643  444444  37999999999999 78999999999999999987522110000    01111111  


Q ss_pred             CCcccc---ccceeEEEEecCCCccceecccCCcceEEEEEeCCCC-EEEeecCCCeEEEEECCC----CeeeeeeecCC
Q 042146           71 GHEQGI---SDLATIRLWDVPTATSLKTLIGHTNYVFCINFNPQSN-RIVSDTFNETIRIWDIKT----GKCLKVLPAHS  142 (262)
Q Consensus        71 ~~~~~v---~~~~~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~~~~~dg~i~vwd~~~----~~~~~~~~~~~  142 (262)
                      .....+   ...+.|++||+ +++.+..+..|...|.+++|+|+++ ++++++.|+.|++||+++    +.++..+ .|.
T Consensus       173 ~~~~~l~~~~~d~~i~i~d~-~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~-~~~  250 (383)
T 3ei3_B          173 VSRQMLATGDSTGRLLLLGL-DGHEIFKEKLHKAKVTHAEFNPRCDWLMATSSVDATVKLWDLRNIKDKNSYIAEM-PHE  250 (383)
T ss_dssp             TTTTEEEEEETTSEEEEEET-TSCEEEEEECSSSCEEEEEECSSCTTEEEEEETTSEEEEEEGGGCCSTTCEEEEE-ECS
T ss_pred             CCCCEEEEECCCCCEEEEEC-CCCEEEEeccCCCcEEEEEECCCCCCEEEEEeCCCEEEEEeCCCCCcccceEEEe-cCC
Confidence            111111   12238999999 5778888999999999999999998 899999999999999997    5666666 699


Q ss_pred             CCeeeEEEcc-CCCEEEEEeCCCeEEEEeCCC--------------------------CCccEEE---------EEcCCC
Q 042146          143 DPVTAIDFNR-DGTMIVTSSYDGLYRILDAST--------------------------PNGKFIL---------VGTLDN  186 (262)
Q Consensus       143 ~~v~~~~~~~-~~~~l~~~~~dg~i~~~d~~~--------------------------~~~~~l~---------~~~~dg  186 (262)
                      ..|.+++|+| ++++|++++.|+.|++||++.                          |++..++         +|+.||
T Consensus       251 ~~v~~~~~s~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~s~dg~~s~s~d~  330 (383)
T 3ei3_B          251 KPVNAAYFNPTDSTKLLTTDQRNEIRVYSSYDWSKPDQIIIHPHRQFQHLTPIKATWHPMYDLIVAGRYPDDQLLLNDKR  330 (383)
T ss_dssp             SCEEEEEECTTTSCEEEEEESSSEEEEEETTBTTSCSEEEECCBCCCTTSCCCCCEECSSSSEEEEECBCCTTTCTTCCC
T ss_pred             CceEEEEEcCCCCCEEEEEcCCCcEEEEECCCCccccccccccccccccccceEEeccCCCCceEEEecCCcccccCCCC
Confidence            9999999999 999999999999999999875                          1233333         446899


Q ss_pred             eEEEEecCCCceeeEEeccCCceeEEEEEEecCCCeeEEccccceEEEEEcCCCCeEEEeeecCCCcEEEEeecc
Q 042146          187 TLRLWNYSTRKILKTYSGYTNSKYCISSTFSVTNGKYIVSHRDPVISVASHPAKNIIASGALDNDRTMKIWTQEK  261 (262)
Q Consensus       187 ~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~d~d~~i~iw~~~~  261 (262)
                      .|++||+.+++++..+.++.                    |...+..++|+|++++|++++   |+.|++|++++
T Consensus       331 ~i~iwd~~~~~~~~~l~~~~--------------------~~~~~~~~~~s~~g~~l~s~s---d~~i~iw~~~~  382 (383)
T 3ei3_B          331 TIDIYDANSGGLVHQLRDPN--------------------AAGIISLNKFSPTGDVLASGM---GFNILIWNRED  382 (383)
T ss_dssp             CEEEEETTTCCEEEEECBTT--------------------BCSCCCEEEECTTSSEEEEEE---TTEEEEEECC-
T ss_pred             eEEEEecCCCceeeeecCCC--------------------CCceEEEEEEecCccEEEEec---CCcEEEEecCC
Confidence            99999999999999887643                    566788889999999999996   69999999975

>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A

Probab=100.00  E-value=1e-34  Score=226.37  Aligned_cols=217  Identities=18%  Similarity=0.297  Sum_probs=179.7

Q ss_pred             cccCcCceEEEEEccCCCeEEEecCCCeEEEeecCCCCCCCCC-------CCCCCccccCC--cccc---ccceeEEEEe
Q 042146           19 LNGHLRAVSYVKFSHDGRLLTSSSAEKTLLTYSLSSISNFDST-------PPSPLQKFTGH--EQGI---SDLATIRLWD   86 (262)
Q Consensus        19 ~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~-------~~~~~~~~~~~--~~~v---~~~~~i~v~d   86 (262)
                      ..+|..+|++++|+|++++|++++ ||.|++|++.........       ....+..+...  ...+   ...+.|++||
T Consensus        47 ~~~h~~~v~~~~~~~~~~~l~~~~-dg~i~iw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d  125 (337)
T 1gxr_A           47 TLNHGEVVCAVTISNPTRHVYTGG-KGCVKVWDISHPGNKSPVSQLDCLNRDNYIRSCKLLPDGCTLIVGGEASTLSIWD  125 (337)
T ss_dssp             EECCSSCCCEEEECSSSSEEEEEC-BSEEEEEETTSTTCCSCSEEEECSCTTSBEEEEEECTTSSEEEEEESSSEEEEEE
T ss_pred             eccCCCceEEEEEecCCcEEEEcC-CCeEEEEECCCCCceeeeecccccCCCCcEEEEEEcCCCCEEEEEcCCCcEEEEE
Confidence            347999999999999999999999 999999999764321111       11111111111  1111   1123899999


Q ss_pred             cCCCc--cceecccCCcceEEEEEeCCCCEEEeecCCCeEEEEECCCCeeeeeeecCCCCeeeEEEccCCCEEEEEeCCC
Q 042146           87 VPTAT--SLKTLIGHTNYVFCINFNPQSNRIVSDTFNETIRIWDIKTGKCLKVLPAHSDPVTAIDFNRDGTMIVTSSYDG  164 (262)
Q Consensus        87 ~~~~~--~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg  164 (262)
                      +.+++  ....+..|...|.+++|+|+++++++++.||.|++||+++++.+..+..|...+.+++|+|++++|++++.||
T Consensus       126 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~v~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg  205 (337)
T 1gxr_A          126 LAAPTPRIKAELTSSAPACYALAISPDSKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDISNDGTKLWTGGLDN  205 (337)
T ss_dssp             CCCC--EEEEEEECSSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTS
T ss_pred             CCCCCcceeeecccCCCceEEEEECCCCCEEEEEeCCCcEEEEeCCCCceeeeeecccCceEEEEECCCCCEEEEEecCC
Confidence            99877  5567788999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             eEEEEeCCC-------------------CCccEEEEEcCCCeEEEEecCCCceeeEEeccCCceeEEEEEEecCCCeeEE
Q 042146          165 LYRILDAST-------------------PNGKFILVGTLDNTLRLWNYSTRKILKTYSGYTNSKYCISSTFSVTNGKYIV  225 (262)
Q Consensus       165 ~i~~~d~~~-------------------~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  225 (262)
                      .|++||++.                   |+++++++++.++.|++||+++++.. .+..                     
T Consensus       206 ~i~~~d~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~i~~~~~~~~~~~-~~~~---------------------  263 (337)
T 1gxr_A          206 TVRSWDLREGRQLQQHDFTSQIFSLGYCPTGEWLAVGMESSNVEVLHVNKPDKY-QLHL---------------------  263 (337)
T ss_dssp             EEEEEETTTTEEEEEEECSSCEEEEEECTTSSEEEEEETTSCEEEEETTSSCEE-EECC---------------------
T ss_pred             cEEEEECCCCceEeeecCCCceEEEEECCCCCEEEEEcCCCcEEEEECCCCCeE-EEcC---------------------
Confidence            999999886                   78999999999999999999987654 3333                     


Q ss_pred             ccccceEEEEEcCCCCeEEEeeecCCCcEEEEeecc
Q 042146          226 SHRDPVISVASHPAKNIIASGALDNDRTMKIWTQEK  261 (262)
Q Consensus       226 ~~~~~v~~~~~~p~~~~l~~~~~d~d~~i~iw~~~~  261 (262)
                       |...|.+++|+|++++|++++  .||.|++|+++.
T Consensus       264 -~~~~v~~~~~~~~~~~l~~~~--~dg~i~~~~~~~  296 (337)
T 1gxr_A          264 -HESCVLSLKFAYCGKWFVSTG--KDNLLNAWRTPY  296 (337)
T ss_dssp             -CSSCEEEEEECTTSSEEEEEE--TTSEEEEEETTT
T ss_pred             -CccceeEEEECCCCCEEEEec--CCCcEEEEECCC
Confidence             888999999999999999999  899999999864

>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}

Probab=100.00  E-value=1.6e-34  Score=223.11  Aligned_cols=224  Identities=23%  Similarity=0.405  Sum_probs=188.2

Q ss_pred             CCCCceeeec--ccccceecccCcCceEEEEEccCCCeEEEecCCCeEEEeecCCCCCCCCCCCCCCccccCCccccccc
Q 042146            2 SSDRSLESFR--PYTLTQTLNGHLRAVSYVKFSHDGRLLTSSSAEKTLLTYSLSSISNFDSTPPSPLQKFTGHEQGISDL   79 (262)
Q Consensus         2 s~d~~i~~~~--~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~   79 (262)
                      +.||.+..|+  ..+....+..|...|.+++|+|++++|++++.||.|++|++.....     ......+..|...+..+
T Consensus        36 ~~dg~v~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~~~~~~~~-----~~~~~~~~~~~~~i~~~  110 (313)
T 3odt_A           36 SRDGTVRLWSKDDQWLGTVVYTGQGFLNSVCYDSEKELLLFGGKDTMINGVPLFATSG-----EDPLYTLIGHQGNVCSL  110 (313)
T ss_dssp             ETTSEEEEEEESSSEEEEEEEECSSCEEEEEEETTTTEEEEEETTSCEEEEETTCCTT-----SCC-CEECCCSSCEEEE
T ss_pred             EcCCcEEEEECCCCEEEEEeecCCccEEEEEECCCCCEEEEecCCCeEEEEEeeecCC-----CCcccchhhcccCEEEE
Confidence            4688888886  5567788889999999999999999999999999999999865321     22333344444443332


Q ss_pred             -------------eeEEEEecCCCccceecccCCcceEEEEEeC-CCCEEEeecCCCeEEEEECCCCeeeeeeec-CCCC
Q 042146           80 -------------ATIRLWDVPTATSLKTLIGHTNYVFCINFNP-QSNRIVSDTFNETIRIWDIKTGKCLKVLPA-HSDP  144 (262)
Q Consensus        80 -------------~~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~-~~~~  144 (262)
                                   +.|++||  .++....+..|...+.+++++| +++++++++.||.|++||  ..+....+.. |...
T Consensus       111 ~~~~~~l~~~~~d~~i~~~d--~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~i~d--~~~~~~~~~~~~~~~  186 (313)
T 3odt_A          111 SFQDGVVISGSWDKTAKVWK--EGSLVYNLQAHNASVWDAKVVSFSENKFLTASADKTIKLWQ--NDKVIKTFSGIHNDV  186 (313)
T ss_dssp             EEETTEEEEEETTSEEEEEE--TTEEEEEEECCSSCEEEEEEEETTTTEEEEEETTSCEEEEE--TTEEEEEECSSCSSC
T ss_pred             EecCCEEEEEeCCCCEEEEc--CCcEEEecccCCCceeEEEEccCCCCEEEEEECCCCEEEEe--cCceEEEEeccCccc
Confidence                         2899999  6777788888999999999998 999999999999999999  4555666666 8899


Q ss_pred             eeeEEEccCCCEEEEEeCCCeEEEEeCCC--------------------CCccEEEEEcCCCeEEEEecCCCceeeEEec
Q 042146          145 VTAIDFNRDGTMIVTSSYDGLYRILDAST--------------------PNGKFILVGTLDNTLRLWNYSTRKILKTYSG  204 (262)
Q Consensus       145 v~~~~~~~~~~~l~~~~~dg~i~~~d~~~--------------------~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~  204 (262)
                      +.+++|+|++. +++++.||.|++||++.                    +++ .|++++.||.|++||+++++++..+..
T Consensus       187 i~~~~~~~~~~-~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~-~l~~~~~dg~v~iwd~~~~~~~~~~~~  264 (313)
T 3odt_A          187 VRHLAVVDDGH-FISCSNDGLIKLVDMHTGDVLRTYEGHESFVYCIKLLPNG-DIVSCGEDRTVRIWSKENGSLKQVITL  264 (313)
T ss_dssp             EEEEEEEETTE-EEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECTTS-CEEEEETTSEEEEECTTTCCEEEEEEC
T ss_pred             EEEEEEcCCCe-EEEccCCCeEEEEECCchhhhhhhhcCCceEEEEEEecCC-CEEEEecCCEEEEEECCCCceeEEEec
Confidence            99999999988 99999999999999986                    566 689999999999999999999988887


Q ss_pred             cCCceeEEEEEEecCCCeeEEccccceEEEEEcCCCCeEEEeeecCCCcEEEEeecc
Q 042146          205 YTNSKYCISSTFSVTNGKYIVSHRDPVISVASHPAKNIIASGALDNDRTMKIWTQEK  261 (262)
Q Consensus       205 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~d~d~~i~iw~~~~  261 (262)
                                            |...|.+++|+|+++ +++++  .||.|++|++++
T Consensus       265 ----------------------~~~~i~~~~~~~~~~-~~~~~--~dg~i~iw~~~~  296 (313)
T 3odt_A          265 ----------------------PAISIWSVDCMSNGD-IIVGS--SDNLVRIFSQEK  296 (313)
T ss_dssp             ----------------------SSSCEEEEEECTTSC-EEEEE--TTSCEEEEESCG
T ss_pred             ----------------------cCceEEEEEEccCCC-EEEEe--CCCcEEEEeCCC
Confidence                                  778999999999998 55677  899999999874

>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1

Probab=100.00  E-value=4.1e-35  Score=233.82  Aligned_cols=227  Identities=29%  Similarity=0.534  Sum_probs=172.2

Q ss_pred             cCcCceEEEEEccCCCeEEEecCCCeEEEeecCCCCCCCCCCCC--------------------CCcc--ccCCcccc--
Q 042146           21 GHLRAVSYVKFSHDGRLLTSSSAEKTLLTYSLSSISNFDSTPPS--------------------PLQK--FTGHEQGI--   76 (262)
Q Consensus        21 ~h~~~v~~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~--------------------~~~~--~~~~~~~v--   76 (262)
                      +|.+.|.+++|+|+|++||+|+ ++++++|++............                    .+..  +......+  
T Consensus        62 ~h~~~V~~v~fspdg~~la~g~-~~~v~i~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~dg~~l~s  140 (393)
T 1erj_A           62 DHTSVVCCVKFSNDGEYLATGC-NKTTQVYRVSDGSLVARLSDDSAANKDPENLNTSSSPSSDLYIRSVCFSPDGKFLAT  140 (393)
T ss_dssp             ECSSCCCEEEECTTSSEEEEEC-BSCEEEEETTTCCEEEEECC-----------------CCCCBEEEEEECTTSSEEEE
T ss_pred             CCCCEEEEEEECCCCCEEEEEc-CCcEEEEEecCCCEEEEecCccccccccccccccccCCCceeEEEEEECCCCCEEEE
Confidence            6999999999999999999987 789999998764321100000                    0111  11111111  


Q ss_pred             -ccceeEEEEecCCCccceecccCCcceEEEEEeCCCCEEEeecCCCeEEEEECCCCeeeeeeecCCCCeeeEEEcc-CC
Q 042146           77 -SDLATIRLWDVPTATSLKTLIGHTNYVFCINFNPQSNRIVSDTFNETIRIWDIKTGKCLKVLPAHSDPVTAIDFNR-DG  154 (262)
Q Consensus        77 -~~~~~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~-~~  154 (262)
                       ...+.|++||+.+++.+..+.+|...|.+++|+|++++|++++.|++|++||++++++...+. +...+.+++|+| ++
T Consensus       141 ~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~s~d~~v~iwd~~~~~~~~~~~-~~~~v~~~~~~~~~~  219 (393)
T 1erj_A          141 GAEDRLIRIWDIENRKIVMILQGHEQDIYSLDYFPSGDKLVSGSGDRTVRIWDLRTGQCSLTLS-IEDGVTTVAVSPGDG  219 (393)
T ss_dssp             EETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEE-CSSCEEEEEECSTTC
T ss_pred             EcCCCeEEEEECCCCcEEEEEccCCCCEEEEEEcCCCCEEEEecCCCcEEEEECCCCeeEEEEE-cCCCcEEEEEECCCC
Confidence             122389999999999999999999999999999999999999999999999999998887775 567899999999 89


Q ss_pred             CEEEEEeCCCeEEEEeCCC---------------------------CCccEEEEEcCCCeEEEEecCCCceeeEEeccCC
Q 042146          155 TMIVTSSYDGLYRILDAST---------------------------PNGKFILVGTLDNTLRLWNYSTRKILKTYSGYTN  207 (262)
Q Consensus       155 ~~l~~~~~dg~i~~~d~~~---------------------------~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~  207 (262)
                      ++|++++.|+.|++||++.                           +++++|++|+.|+.|++||+++............
T Consensus       220 ~~l~~~s~d~~v~iwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~g~~l~s~s~d~~v~~wd~~~~~~~~~~~~~~~  299 (393)
T 1erj_A          220 KYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQNANNKSDSKTPNS  299 (393)
T ss_dssp             CEEEEEETTSCEEEEETTTCCEEEEEC------CCCSSCEEEEEECTTSSEEEEEETTSEEEEEEC--------------
T ss_pred             CEEEEEcCCCcEEEEECCCCcEEEeecccccCCCCCCCCEEEEEECCCCCEEEEEeCCCEEEEEECCCCCCcccccCCCC
Confidence            9999999999999999753                           6889999999999999999987543322211000


Q ss_pred             ceeEEEEEEecCCCeeEEccccceEEEEEcCCCCeEEEeeecCCCcEEEEeecc
Q 042146          208 SKYCISSTFSVTNGKYIVSHRDPVISVASHPAKNIIASGALDNDRTMKIWTQEK  261 (262)
Q Consensus       208 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~d~d~~i~iw~~~~  261 (262)
                      . .+         ...+.+|...|.+++|+|++.+|++++  .|+.|++||+..
T Consensus       300 ~-~~---------~~~~~~h~~~v~~~~~~~~~~~l~sgs--~D~~v~iwd~~~  341 (393)
T 1erj_A          300 G-TC---------EVTYIGHKDFVLSVATTQNDEYILSGS--KDRGVLFWDKKS  341 (393)
T ss_dssp             --CE---------EEEEECCSSCEEEEEECGGGCEEEEEE--TTSEEEEEETTT
T ss_pred             C-cc---------eEEEecccCcEEEEEECCCCCEEEEEe--CCCeEEEEECCC
Confidence            0 00         111234899999999999999999999  899999999864

>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X

Probab=100.00  E-value=2.9e-35  Score=234.67  Aligned_cols=250  Identities=14%  Similarity=0.227  Sum_probs=195.9

Q ss_pred             CCCCceeeecc--cc------cceecccCcCceEEEEEccC----C---CeEEEecCCCeEEEeecCCCCC-----CCCC
Q 042146            2 SSDRSLESFRP--YT------LTQTLNGHLRAVSYVKFSHD----G---RLLTSSSAEKTLLTYSLSSISN-----FDST   61 (262)
Q Consensus         2 s~d~~i~~~~~--~~------~~~~~~~h~~~v~~~~~~~~----~---~~l~s~~~d~~i~iw~~~~~~~-----~~~~   61 (262)
                      +.|++|..|+.  .+      ....+.+|..+|.+++|+|+    +   ++|++++.||.|++|++.....     ....
T Consensus        33 ~~dg~i~iw~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~g~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~  112 (397)
T 1sq9_A           33 SGDGYLKVWDNKLLDNENPKDKSYSHFVHKSGLHHVDVLQAIERDAFELCLVATTSFSGDLLFYRITREDETKKVIFEKL  112 (397)
T ss_dssp             ETTSEEEEEESBCCTTCCGGGGEEEEECCTTCEEEEEEEEEEETTTEEEEEEEEEETTSCEEEEEEEECTTTCCEEEEEE
T ss_pred             cCCCEEEEEECCCcccccCCCcceEEecCCCcEEEEEEecccccCCccccEEEEEcCCCCEEEEEccCCcccccccceee
Confidence            46889888863  33      67888899999999999999    9   9999999999999999876543     1111


Q ss_pred             C-C------CCCccccCC------ccc-cc---cceeEEEEecCC------Cccce-----ec-------ccCCcceEEE
Q 042146           62 P-P------SPLQKFTGH------EQG-IS---DLATIRLWDVPT------ATSLK-----TL-------IGHTNYVFCI  106 (262)
Q Consensus        62 ~-~------~~~~~~~~~------~~~-v~---~~~~i~v~d~~~------~~~~~-----~~-------~~~~~~v~~~  106 (262)
                      . .      ..+..+...      ... +.   ..+.|++||+.+      ++.+.     .+       ..|...|.++
T Consensus       113 ~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~  192 (397)
T 1sq9_A          113 DLLDSDMKKHSFWALKWGASNDRLLSHRLVATDVKGTTYIWKFHPFADESNSLTLNWSPTLELQGTVESPMTPSQFATSV  192 (397)
T ss_dssp             CCSCTTGGGSCEEEEEEECCC----CEEEEEEETTSCEEEEEEESSSSHHHHTTTCCCCEEEEEEEECCSSSSCCCCCEE
T ss_pred             cccccccCCCcEEEEEEeeccCCCCceEEEEEeCCCcEEEEeCCccccccccceeeccCcceeeeeeccccCCCCCceEE
Confidence            1 1      222222212      111 21   234899999998      77766     66       4488999999


Q ss_pred             EEeCCCCEEEeecCCCeEEEEECCCCeeeeeeec---C---CCCeeeEEEccCCCEEEEEeCC---CeEEEEeCCC----
Q 042146          107 NFNPQSNRIVSDTFNETIRIWDIKTGKCLKVLPA---H---SDPVTAIDFNRDGTMIVTSSYD---GLYRILDAST----  173 (262)
Q Consensus       107 ~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~---~---~~~v~~~~~~~~~~~l~~~~~d---g~i~~~d~~~----  173 (262)
                      +|+|++ ++++++.||.|++||+++++.+..+..   |   ..+|.+++|+|++++|++++.|   +.|++||++.    
T Consensus       193 ~~~~~~-~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~h~~~~~~i~~i~~~~~~~~l~~~~~d~~~g~i~i~d~~~~~~~  271 (397)
T 1sq9_A          193 DISERG-LIATGFNNGTVQISELSTLRPLYNFESQHSMINNSNSIRSVKFSPQGSLLAIAHDSNSFGCITLYETEFGERI  271 (397)
T ss_dssp             EECTTS-EEEEECTTSEEEEEETTTTEEEEEEECCC---CCCCCEEEEEECSSTTEEEEEEEETTEEEEEEEETTTCCEE
T ss_pred             EECCCc-eEEEEeCCCcEEEEECCCCceeEEEeccccccccCCccceEEECCCCCEEEEEecCCCCceEEEEECCCCccc
Confidence            999999 999999999999999999999999988   8   9999999999999999999999   9999999753    


Q ss_pred             -----------------------------CCccEEEEEcCCCeEEEEecCCCceeeEEe------ccCCceeEEEEEEec
Q 042146          174 -----------------------------PNGKFILVGTLDNTLRLWNYSTRKILKTYS------GYTNSKYCISSTFSV  218 (262)
Q Consensus       174 -----------------------------~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~------~~~~~~~~~~~~~~~  218 (262)
                                                   +++++|++++.||.|++||+++++++..+.      .+.....       .
T Consensus       272 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~-------~  344 (397)
T 1sq9_A          272 GSLSVPTHSSQASLGEFAHSSWVMSLSFNDSGETLCSAGWDGKLRFWDVKTKERITTLNMHCDDIEIEEDIL-------A  344 (397)
T ss_dssp             EEECBC--------CCBSBSSCEEEEEECSSSSEEEEEETTSEEEEEETTTTEEEEEEECCGGGCSSGGGCC-------C
T ss_pred             ceeccCcccccccccccccCCcEEEEEECCCCCEEEEEeCCCeEEEEEcCCCceeEEEecccCcccchhhhh-------c
Confidence                                         678899999999999999999999999888      4210000       0


Q ss_pred             CCCeeEEccccceEEEEEcCCC----------CeEEEeeecCCCcEEEEeecc
Q 042146          219 TNGKYIVSHRDPVISVASHPAK----------NIIASGALDNDRTMKIWTQEK  261 (262)
Q Consensus       219 ~~~~~~~~~~~~v~~~~~~p~~----------~~l~~~~~d~d~~i~iw~~~~  261 (262)
                      ........|..+|.+++|+|++          ++|++++  .||.|++|+++.
T Consensus       345 g~~~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~l~s~~--~dg~i~iw~~~~  395 (397)
T 1sq9_A          345 VDEHGDSLAEPGVFDVKFLKKGWRSGMGADLNESLCCVC--LDRSIRWFREAG  395 (397)
T ss_dssp             BCTTSCBCSSCCEEEEEEECTTTSBSTTCTTSCEEEEEE--TTTEEEEEEEEC
T ss_pred             cccccccccCCceeEEEeccccccccccccccceEEEec--CCCcEEEEEcCC
Confidence            0000001138899999999998          7999999  899999999875

>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A

Probab=100.00  E-value=4.7e-35  Score=253.23  Aligned_cols=217  Identities=19%  Similarity=0.383  Sum_probs=191.3

Q ss_pred             cccceecccCcCceEEEEEccCCCeEEEecCCCeEEEeecCCCCCCCCCCCCCCccccCCcccccc--------------
Q 042146           13 YTLTQTLNGHLRAVSYVKFSHDGRLLTSSSAEKTLLTYSLSSISNFDSTPPSPLQKFTGHEQGISD--------------   78 (262)
Q Consensus        13 ~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~--------------   78 (262)
                      +++.+.+.+|.+.|++++|+|++++|++++.||.|++||+.....        ...+..|...+..              
T Consensus         3 l~~~~~~~~h~~~v~~i~~sp~~~~la~~~~~g~v~iwd~~~~~~--------~~~~~~~~~~v~~~~~s~~~~~l~~~~   74 (814)
T 3mkq_A            3 LDIKKTFSNRSDRVKGIDFHPTEPWVLTTLYSGRVEIWNYETQVE--------VRSIQVTETPVRAGKFIARKNWIIVGS   74 (814)
T ss_dssp             CCCEEEEEEECSCEEEEEECSSSSEEEEEETTSEEEEEETTTTEE--------EEEEECCSSCEEEEEEEGGGTEEEEEE
T ss_pred             cccceeeecCCCceEEEEECCCCCEEEEEeCCCEEEEEECCCCce--------EEEEecCCCcEEEEEEeCCCCEEEEEe
Confidence            456788899999999999999999999999999999999865322        2223333333322              


Q ss_pred             -ceeEEEEecCCCccceecccCCcceEEEEEeCCCCEEEeecCCCeEEEEECCCC-eeeeeeecCCCCeeeEEEcc-CCC
Q 042146           79 -LATIRLWDVPTATSLKTLIGHTNYVFCINFNPQSNRIVSDTFNETIRIWDIKTG-KCLKVLPAHSDPVTAIDFNR-DGT  155 (262)
Q Consensus        79 -~~~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~-~~~~~~~~~~~~v~~~~~~~-~~~  155 (262)
                       .+.|++||+.+++.+..+.+|...|.+++|+|++++|++++.||.|++||++++ .....+..|..+|.+++|+| ++.
T Consensus        75 ~dg~i~vw~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~  154 (814)
T 3mkq_A           75 DDFRIRVFNYNTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPS  154 (814)
T ss_dssp             TTSEEEEEETTTCCEEEEEECCSSCEEEEEECSSSSEEEEEETTSEEEEEEGGGTSEEEEEEECCSSCEEEEEEETTEEE
T ss_pred             CCCeEEEEECCCCcEEEEEecCCCCEEEEEEeCCCCEEEEEcCCCEEEEEECCCCceEEEEEcCCCCcEEEEEEEcCCCC
Confidence             238999999999999999999999999999999999999999999999999987 67778888999999999999 889


Q ss_pred             EEEEEeCCCeEEEEeCCC---------------------C--CccEEEEEcCCCeEEEEecCCCceeeEEeccCCceeEE
Q 042146          156 MIVTSSYDGLYRILDAST---------------------P--NGKFILVGTLDNTLRLWNYSTRKILKTYSGYTNSKYCI  212 (262)
Q Consensus       156 ~l~~~~~dg~i~~~d~~~---------------------~--~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~  212 (262)
                      .|++++.||.|++||+..                     |  +++++++++.||.|++||+++++++..+..        
T Consensus       155 ~l~~~~~dg~v~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~--------  226 (814)
T 3mkq_A          155 TFASGCLDRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATLEG--------  226 (814)
T ss_dssp             EEEEEETTSEEEEEETTCSSCSEEEECCCTTCCCEEEECCSTTCCEEEEECTTSEEEEEETTTTEEEEEEEC--------
T ss_pred             EEEEEeCCCeEEEEECCCCcceeEEecCCCCCEEEEEEEECCCCCEEEEEeCCCEEEEEECCCCcEEEEEcC--------
Confidence            999999999999999865                     4  889999999999999999999999888877        


Q ss_pred             EEEEecCCCeeEEccccceEEEEEcCCCCeEEEeeecCCCcEEEEeecc
Q 042146          213 SSTFSVTNGKYIVSHRDPVISVASHPAKNIIASGALDNDRTMKIWTQEK  261 (262)
Q Consensus       213 ~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~d~d~~i~iw~~~~  261 (262)
                                    |...|.+++|+|++++|++++  .||.|++|++..
T Consensus       227 --------------~~~~v~~~~~~~~~~~l~~~~--~dg~v~vwd~~~  259 (814)
T 3mkq_A          227 --------------HMSNVSFAVFHPTLPIIISGS--EDGTLKIWNSST  259 (814)
T ss_dssp             --------------CSSCEEEEEECSSSSEEEEEE--TTSCEEEEETTT
T ss_pred             --------------CCCCEEEEEEcCCCCEEEEEe--CCCeEEEEECCC
Confidence                          888999999999999999999  899999999864

>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli}

Probab=100.00  E-value=5.6e-35  Score=248.82  Aligned_cols=194  Identities=24%  Similarity=0.467  Sum_probs=171.4

Q ss_pred             ccceecccCcCceEEEEEccCC-CeEEEecCCCeEEEeecCCCCCCCCCCCCCCccccCCccccccceeEEEEecCCCcc
Q 042146           14 TLTQTLNGHLRAVSYVKFSHDG-RLLTSSSAEKTLLTYSLSSISNFDSTPPSPLQKFTGHEQGISDLATIRLWDVPTATS   92 (262)
Q Consensus        14 ~~~~~~~~h~~~v~~~~~~~~~-~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~i~v~d~~~~~~   92 (262)
                      .....+++|.+.|++++|+|++ ++|++|+.|++|++|++.....                              ..+..
T Consensus       373 ~~~~~l~~H~~~V~~v~~~~~~~~~l~s~s~D~~i~~W~~~~~~~------------------------------~~~~~  422 (694)
T 3dm0_A          373 VLKGTMRAHTDMVTAIATPIDNADIIVSASRDKSIILWKLTKDDK------------------------------AYGVA  422 (694)
T ss_dssp             EEEEEEECCSSCEEEEECCTTCCSEEEEEETTSEEEEEECCCSTT------------------------------CSCEE
T ss_pred             chhhhcccCCceeEEEEecCCCCCEEEEEeCCCcEEEEEccCCCc------------------------------ccccc
Confidence            3455788999999999999874 7999999999999998754210                              11233


Q ss_pred             ceecccCCcceEEEEEeCCCCEEEeecCCCeEEEEECCCCeeeeeeecCCCCeeeEEEccCCCEEEEEeCCCeEEEEeCC
Q 042146           93 LKTLIGHTNYVFCINFNPQSNRIVSDTFNETIRIWDIKTGKCLKVLPAHSDPVTAIDFNRDGTMIVTSSYDGLYRILDAS  172 (262)
Q Consensus        93 ~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~d~~  172 (262)
                      ...+.+|...|.+++|+|++++|++|+.||.|++||+++++.+..+.+|...|.+++|+|++++|++++.|++|++||..
T Consensus       423 ~~~~~~h~~~v~~v~~s~~g~~l~sgs~Dg~v~vwd~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~D~~i~iwd~~  502 (694)
T 3dm0_A          423 QRRLTGHSHFVEDVVLSSDGQFALSGSWDGELRLWDLAAGVSTRRFVGHTKDVLSVAFSLDNRQIVSASRDRTIKLWNTL  502 (694)
T ss_dssp             EEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEECTTSSCEEEEETTSCEEEECTT
T ss_pred             cceecCCCCcEEEEEECCCCCEEEEEeCCCcEEEEECCCCcceeEEeCCCCCEEEEEEeCCCCEEEEEeCCCEEEEEECC
Confidence            45678899999999999999999999999999999999999999999999999999999999999999999999999975


Q ss_pred             C-----------------------CCc--cEEEEEcCCCeEEEEecCCCceeeEEeccCCceeEEEEEEecCCCeeEEcc
Q 042146          173 T-----------------------PNG--KFILVGTLDNTLRLWNYSTRKILKTYSGYTNSKYCISSTFSVTNGKYIVSH  227 (262)
Q Consensus       173 ~-----------------------~~~--~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  227 (262)
                      .                       +++  ..+++|+.|+.|++||++++++...+.+                      |
T Consensus       503 ~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~d~~v~vwd~~~~~~~~~~~~----------------------h  560 (694)
T 3dm0_A          503 GECKYTISEGGEGHRDWVSCVRFSPNTLQPTIVSASWDKTVKVWNLSNCKLRSTLAG----------------------H  560 (694)
T ss_dssp             SCEEEEECSSTTSCSSCEEEEEECSCSSSCEEEEEETTSCEEEEETTTCCEEEEECC----------------------C
T ss_pred             CCcceeeccCCCCCCCcEEEEEEeCCCCcceEEEEeCCCeEEEEECCCCcEEEEEcC----------------------C
Confidence            3                       333  5799999999999999999998888877                      8


Q ss_pred             ccceEEEEEcCCCCeEEEeeecCCCcEEEEeecc
Q 042146          228 RDPVISVASHPAKNIIASGALDNDRTMKIWTQEK  261 (262)
Q Consensus       228 ~~~v~~~~~~p~~~~l~~~~~d~d~~i~iw~~~~  261 (262)
                      ...|++++|+|++++|++++  .||.|++||+.+
T Consensus       561 ~~~v~~v~~spdg~~l~sg~--~Dg~i~iwd~~~  592 (694)
T 3dm0_A          561 TGYVSTVAVSPDGSLCASGG--KDGVVLLWDLAE  592 (694)
T ss_dssp             SSCEEEEEECTTSSEEEEEE--TTSBCEEEETTT
T ss_pred             CCCEEEEEEeCCCCEEEEEe--CCCeEEEEECCC
Confidence            89999999999999999999  899999999864

>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}

Probab=100.00  E-value=6.6e-36  Score=239.76  Aligned_cols=258  Identities=13%  Similarity=0.238  Sum_probs=191.1

Q ss_pred             CCCceeeeccc------ccceecccCcCceEEEEEccC-CCeEEEecCCCeEEEeecCCCCC------CCCC-----CCC
Q 042146            3 SDRSLESFRPY------TLTQTLNGHLRAVSYVKFSHD-GRLLTSSSAEKTLLTYSLSSISN------FDST-----PPS   64 (262)
Q Consensus         3 ~d~~i~~~~~~------~~~~~~~~h~~~v~~~~~~~~-~~~l~s~~~d~~i~iw~~~~~~~------~~~~-----~~~   64 (262)
                      .|+.+..|+..      +....+.+|..+|.+++|+|+ +++|++++.|+.|++||+.....      ....     ...
T Consensus        87 ~dg~v~vw~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~  166 (416)
T 2pm9_A           87 DNGSLELYSTNEANNAINSMARFSNHSSSVKTVKFNAKQDNVLASGGNNGEIFIWDMNKCTESPSNYTPLTPGQSMSSVD  166 (416)
T ss_dssp             SSSCEEEECCSSTTSCCCEEEECCCSSSCCCEEEECSSSTTBEEEECSSSCEEBCBTTTTSSCTTTCCCBCCCCSCCSSC
T ss_pred             cCCeEEEeecccccccccchhhccCCccceEEEEEcCCCCCEEEEEcCCCeEEEEECCCCccccccccccccccccCCCC
Confidence            57888888743      378888999999999999998 89999999999999999987541      1000     111


Q ss_pred             CCccccCCcc--cc----ccceeEEEEecCCCccceecccC------CcceEEEEEeCCC-CEEEeecCCC---eEEEEE
Q 042146           65 PLQKFTGHEQ--GI----SDLATIRLWDVPTATSLKTLIGH------TNYVFCINFNPQS-NRIVSDTFNE---TIRIWD  128 (262)
Q Consensus        65 ~~~~~~~~~~--~v----~~~~~i~v~d~~~~~~~~~~~~~------~~~v~~~~~~~~~-~~l~~~~~dg---~i~vwd  128 (262)
                      .+..+.....  ..    ...+.|++||+++++.+..+..+      ...|.+++|+|++ .++++++.|+   .|++||
T Consensus       167 ~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~~~~i~~~d  246 (416)
T 2pm9_A          167 EVISLAWNQSLAHVFASAGSSNFASIWDLKAKKEVIHLSYTSPNSGIKQQLSVVEWHPKNSTRVATATGSDNDPSILIWD  246 (416)
T ss_dssp             CCCEEEECSSCTTEEEEESSSSCEEEEETTTTEEEEEECCCCCSSCCCCCEEEEEECSSCTTEEEEEECCSSSCCCCEEE
T ss_pred             CeeEEEeCCCCCcEEEEEcCCCCEEEEECCCCCcceEEeccccccccCCceEEEEECCCCCCEEEEEECCCCCceEEEEe
Confidence            1111111111  11    12338999999999888887766      7899999999987 6899999998   999999


Q ss_pred             CCCC-eeeeeee-cCCCCeeeEEEcc-CCCEEEEEeCCCeEEEEeCCC--------------------CCc-cEEEEEcC
Q 042146          129 IKTG-KCLKVLP-AHSDPVTAIDFNR-DGTMIVTSSYDGLYRILDAST--------------------PNG-KFILVGTL  184 (262)
Q Consensus       129 ~~~~-~~~~~~~-~~~~~v~~~~~~~-~~~~l~~~~~dg~i~~~d~~~--------------------~~~-~~l~~~~~  184 (262)
                      ++++ +++..+. +|...|.+++|+| ++++|++++.||.|++||++.                    |++ .+|++++.
T Consensus       247 ~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~l~s~~~dg~v~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~l~s~~~  326 (416)
T 2pm9_A          247 LRNANTPLQTLNQGHQKGILSLDWCHQDEHLLLSSGRDNTVLLWNPESAEQLSQFPARGNWCFKTKFAPEAPDLFACASF  326 (416)
T ss_dssp             TTSTTSCSBCCCSCCSSCEEEEEECSSCSSCEEEEESSSEEEEECSSSCCEEEEEECSSSCCCCEEECTTCTTEEEECCS
T ss_pred             CCCCCCCcEEeecCccCceeEEEeCCCCCCeEEEEeCCCCEEEeeCCCCccceeecCCCCceEEEEECCCCCCEEEEEec
Confidence            9986 6677777 8999999999999 999999999999999999876                    677 89999999


Q ss_pred             CCeEEEEecCCCceeeEEeccCCceeEEEEEEecCCC-------------eeEEccccceEEEEEcCCCCeEEEeeecCC
Q 042146          185 DNTLRLWNYSTRKILKTYSGYTNSKYCISSTFSVTNG-------------KYIVSHRDPVISVASHPAKNIIASGALDND  251 (262)
Q Consensus       185 dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------~~~~~~~~~v~~~~~~p~~~~l~~~~~d~d  251 (262)
                      ||.|++||+.++...................+....+             .....|..++.+++|+|+|++|++++  .|
T Consensus       327 d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~la~~~--~d  404 (416)
T 2pm9_A          327 DNKIEVQTLQNLTNTLDEQETETKQQESETDFWNNVSREESKEKPSVFHLQAPTWYGEPSPAAHWAFGGKLVQITP--DG  404 (416)
T ss_dssp             SSEEEEEESCCCCCSSCC----------------------CCSCCCSSCCCCCSTTCCCSCCCEEETTTEEECBCT--TS
T ss_pred             CCcEEEEEccCCCCCcccccccccccCCcccccccccccccccccccccccCCccccCCccceEEeeCCeEEEEeC--CC
Confidence            9999999998876543321100000000000000000             00011667888999999999999999  89


Q ss_pred             CcEEEEeeccC
Q 042146          252 RTMKIWTQEKE  262 (262)
Q Consensus       252 ~~i~iw~~~~~  262 (262)
                      +.|+||++..+
T Consensus       405 ~~v~~w~~~~~  415 (416)
T 2pm9_A          405 KGVSITNPKIS  415 (416)
T ss_dssp             SCBCCBCCCCC
T ss_pred             CeEEEEEeccC
Confidence            99999998754

>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A

Probab=100.00  E-value=1.5e-35  Score=233.59  Aligned_cols=234  Identities=14%  Similarity=0.282  Sum_probs=180.3

Q ss_pred             CCceeeec--ccccceeccc-----CcCceEEEEEccC----CCeEEEecCCCeEEEeecCCCCCCCCC--CCCCCcccc
Q 042146            4 DRSLESFR--PYTLTQTLNG-----HLRAVSYVKFSHD----GRLLTSSSAEKTLLTYSLSSISNFDST--PPSPLQKFT   70 (262)
Q Consensus         4 d~~i~~~~--~~~~~~~~~~-----h~~~v~~~~~~~~----~~~l~s~~~d~~i~iw~~~~~~~~~~~--~~~~~~~~~   70 (262)
                      ++.+..|+  ..+.+..+..     |...|.+++|+|+    +++|++|+.||.|++||+.........  ....+..+.
T Consensus        43 ~~~v~vw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~i~~~~  122 (366)
T 3k26_A           43 SNRVTLYECHSQGEIRLLQSYVDADADENFYTCAWTYDSNTSHPLLAVAGSRGIIRIINPITMQCIKHYVGHGNAINELK  122 (366)
T ss_dssp             TTEEEEEEECGGGCEEEEEEEECSCTTCCEEEEEEEECTTTCCEEEEEEETTCEEEEECTTTCCEEEEEESCCSCEEEEE
T ss_pred             CCEEEEEEcCCCcEEEeeeeccccCCCCcEEEEEeccCCCCCCCEEEEecCCCEEEEEEchhceEeeeecCCCCcEEEEE
Confidence            55666665  3444455543     5678999999999    679999999999999998754321111  111111111


Q ss_pred             CCc---ccc---ccceeEEEEecCCCccceec---ccCCcceEEEEEeCCCCEEEeecCCCeEEEEECCCCeeeeeeec-
Q 042146           71 GHE---QGI---SDLATIRLWDVPTATSLKTL---IGHTNYVFCINFNPQSNRIVSDTFNETIRIWDIKTGKCLKVLPA-  140 (262)
Q Consensus        71 ~~~---~~v---~~~~~i~v~d~~~~~~~~~~---~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~-  140 (262)
                      .+.   ..+   ...+.|++||+.+++.+..+   ..|...|.+++|+|++++|++++.||.|++||+++++....+.. 
T Consensus       123 ~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~  202 (366)
T 3k26_A          123 FHPRDPNLLLSVSKDHALRLWNIQTDTLVAIFGGVEGHRDEVLSADYDLLGEKIMSCGMDHSLKLWRINSKRMMNAIKES  202 (366)
T ss_dssp             ECSSCTTEEEEEETTSCEEEEETTTTEEEEEECSTTSCSSCEEEEEECTTSSEEEEEETTSCEEEEESCSHHHHHHHHHH
T ss_pred             ECCCCCCEEEEEeCCCeEEEEEeecCeEEEEecccccccCceeEEEECCCCCEEEEecCCCCEEEEECCCCcccccccee
Confidence            111   111   11238999999999888877   68999999999999999999999999999999998765544433 


Q ss_pred             ---------------------------CCCCeeeEEEccCCCEEEEEeCCCeEEEEeCCC--------------------
Q 042146          141 ---------------------------HSDPVTAIDFNRDGTMIVTSSYDGLYRILDAST--------------------  173 (262)
Q Consensus       141 ---------------------------~~~~v~~~~~~~~~~~l~~~~~dg~i~~~d~~~--------------------  173 (262)
                                                 |...|.+++|+  +++|++++.|+.|++||++.                    
T Consensus       203 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~  280 (366)
T 3k26_A          203 YDYNPNKTNRPFISQKIHFPDFSTRDIHRNYVDCVRWL--GDLILSKSCENAIVCWKPGKMEDDIDKIKPSESNVTILGR  280 (366)
T ss_dssp             HTCCGGGCSSCCCCEEECCCSEEECSSCSSCCCEEEEE--TTEEEEECSSSEEEEEEESSTTCCGGGCCTTCCCEEEEEE
T ss_pred             EEecCCCCcccccceeeccCccccccCCcceEEEEEEc--CCEEEEEecCCEEEEEeCCCccccccccccCCcchheecc
Confidence                                       89999999998  77999999999999999754                    


Q ss_pred             --------------CC--ccEEEEEcCCCeEEEEecCCCceee----EEeccCCceeEEEEEEecCCCeeEEccccceEE
Q 042146          174 --------------PN--GKFILVGTLDNTLRLWNYSTRKILK----TYSGYTNSKYCISSTFSVTNGKYIVSHRDPVIS  233 (262)
Q Consensus       174 --------------~~--~~~l~~~~~dg~i~i~d~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~  233 (262)
                                    ++  +++|++|+.||.|++||++++++..    .+..+.                    |...|++
T Consensus       281 ~~~~~~~v~~~~~s~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~--------------------~~~~v~~  340 (366)
T 3k26_A          281 FDYSQCDIWYMRFSMDFWQKMLALGNQVGKLYVWDLEVEDPHKAKCTTLTHHK--------------------CGAAIRQ  340 (366)
T ss_dssp             EECSSCCSSCCCCEECTTSSEEEEECTTSCEEEEECCSSSGGGCEEEEECCTT--------------------CCSCEEE
T ss_pred             ccccCCcEEEEEEcCCCCCcEEEEEecCCcEEEEECCCCCCccccceEEcccc--------------------cCCceEE
Confidence                          34  8999999999999999999876443    454421                    3789999


Q ss_pred             EEEcCCCCeEEEeeecCCCcEEEEeecc
Q 042146          234 VASHPAKNIIASGALDNDRTMKIWTQEK  261 (262)
Q Consensus       234 ~~~~p~~~~l~~~~~d~d~~i~iw~~~~  261 (262)
                      ++|+|++++|++++  .||.|++||+.+
T Consensus       341 ~~~s~~~~~l~s~~--~dg~i~iwd~~~  366 (366)
T 3k26_A          341 TSFSRDSSILIAVC--DDASIWRWDRLR  366 (366)
T ss_dssp             EEECTTSSEEEEEE--TTSEEEEEEC--
T ss_pred             EEeCCCCCeEEEEe--CCCEEEEEEecC
Confidence            99999999999999  899999999863

>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A

Probab=100.00  E-value=2.7e-35  Score=236.58  Aligned_cols=215  Identities=15%  Similarity=0.234  Sum_probs=180.9

Q ss_pred             CceEEEEEccCCCeEEEecCCCeEEEeecCCCCCCCCCCCCCCcc---ccCCcccc---ccceeEEEEecCCCccceecc
Q 042146           24 RAVSYVKFSHDGRLLTSSSAEKTLLTYSLSSISNFDSTPPSPLQK---FTGHEQGI---SDLATIRLWDVPTATSLKTLI   97 (262)
Q Consensus        24 ~~v~~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~---~~~~~~~v---~~~~~i~v~d~~~~~~~~~~~   97 (262)
                      ..+++++|+|++++|++++.|+.|++||+................   +......+   ...+.|++||+.+++....+.
T Consensus        57 ~~~~~~~~s~~g~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~  136 (420)
T 3vl1_A           57 DAGKGNTFEKVGSHLYKARLDGHDFLFNTIIRDGSKMLKRADYTAVDTAKLQMRRFILGTTEGDIKVLDSNFNLQREIDQ  136 (420)
T ss_dssp             BCCTTCEEEEEETTEEEEEETTEEEEEECCSEETTTTSCSCCEEEEEEECSSSCEEEEEETTSCEEEECTTSCEEEEETT
T ss_pred             ccccceeeeecCCeEEEEEcCCcEEEEEecccceeeEEecCCceEEEEEecCCCEEEEEECCCCEEEEeCCCcceeeecc
Confidence            335589999999999999999999999987754433222221111   11111111   123389999999998888888


Q ss_pred             cCCcceEEEEEeCCCCEEEeecCCCeEEEEECCCCeeeeeeecCCCCeeeEEEccCCCEEEEEeCCCeEEEEeCCC----
Q 042146           98 GHTNYVFCINFNPQSNRIVSDTFNETIRIWDIKTGKCLKVLPAHSDPVTAIDFNRDGTMIVTSSYDGLYRILDAST----  173 (262)
Q Consensus        98 ~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~d~~~----  173 (262)
                      +|...|.+++|+|++++|++|+.|+.|++||+++++.+..+.+|...|.+++|+|++++|++++.|+.|++||+++    
T Consensus       137 ~h~~~v~~~~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~  216 (420)
T 3vl1_A          137 AHVSEITKLKFFPSGEALISSSQDMQLKIWSVKDGSNPRTLIGHRATVTDIAIIDRGRNVLSASLDGTIRLWECGTGTTI  216 (420)
T ss_dssp             SSSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCCCEEEECCSSCEEEEEEETTTTEEEEEETTSCEEEEETTTTEEE
T ss_pred             cccCccEEEEECCCCCEEEEEeCCCeEEEEeCCCCcCceEEcCCCCcEEEEEEcCCCCEEEEEcCCCcEEEeECCCCcee
Confidence            9999999999999999999999999999999999999999999999999999999999999999999999999874    


Q ss_pred             ----------------------------------------CCccEEEEEcCCCeEEEEecCCCceeeEEeccCCceeEEE
Q 042146          174 ----------------------------------------PNGKFILVGTLDNTLRLWNYSTRKILKTYSGYTNSKYCIS  213 (262)
Q Consensus       174 ----------------------------------------~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~  213 (262)
                                                              +++++|++|+.||.|++||+++++.+..+...        
T Consensus       217 ~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~--------  288 (420)
T 3vl1_A          217 HTFNRKENPHDGVNSIALFVGTDRQLHEISTSKKNNLEFGTYGKYVIAGHVSGVITVHNVFSKEQTIQLPSK--------  288 (420)
T ss_dssp             EEECBTTBTTCCEEEEEEEECCCSSCGGGCCCCCCTTCSSCTTEEEEEEETTSCEEEEETTTCCEEEEECCT--------
T ss_pred             EEeecCCCCCCCccEEEEecCCcceeeecccCcccceEEcCCCCEEEEEcCCCeEEEEECCCCceeEEcccc--------
Confidence                                                    46789999999999999999998877776431        


Q ss_pred             EEEecCCCeeEEccccceEEEEEcCCCC-eEEEeeecCCCcEEEEeecc
Q 042146          214 STFSVTNGKYIVSHRDPVISVASHPAKN-IIASGALDNDRTMKIWTQEK  261 (262)
Q Consensus       214 ~~~~~~~~~~~~~~~~~v~~~~~~p~~~-~l~~~~~d~d~~i~iw~~~~  261 (262)
                                   |...|.+++|+|++. +|++++  .||.|++||+.+
T Consensus       289 -------------~~~~v~~~~~~~~~~~~l~~g~--~dg~i~vwd~~~  322 (420)
T 3vl1_A          289 -------------FTCSCNSLTVDGNNANYIYAGY--ENGMLAQWDLRS  322 (420)
T ss_dssp             -------------TSSCEEEEEECSSCTTEEEEEE--TTSEEEEEETTC
T ss_pred             -------------cCCCceeEEEeCCCCCEEEEEe--CCCeEEEEEcCC
Confidence                         788999999999999 999999  899999999864

>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A

Probab=100.00  E-value=6e-35  Score=234.59  Aligned_cols=238  Identities=17%  Similarity=0.286  Sum_probs=187.4

Q ss_pred             CCCCceeeec--ccccceecccCcCceEEEEEccCCCeEEEecCCCeEEEeecCCCCCCCCCCCCCCccccCCccccccc
Q 042146            2 SSDRSLESFR--PYTLTQTLNGHLRAVSYVKFSHDGRLLTSSSAEKTLLTYSLSSISNFDSTPPSPLQKFTGHEQGISDL   79 (262)
Q Consensus         2 s~d~~i~~~~--~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~   79 (262)
                      +.|+.+..|+  ..+....+.+|.++|++++|+|++++|++|+.|+.|++||+.....        ...+.+|...+..+
T Consensus       116 ~~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~d~~i~iwd~~~~~~--------~~~~~~h~~~v~~~  187 (420)
T 3vl1_A          116 TTEGDIKVLDSNFNLQREIDQAHVSEITKLKFFPSGEALISSSQDMQLKIWSVKDGSN--------PRTLIGHRATVTDI  187 (420)
T ss_dssp             ETTSCEEEECTTSCEEEEETTSSSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCC--------CEEEECCSSCEEEE
T ss_pred             ECCCCEEEEeCCCcceeeecccccCccEEEEECCCCCEEEEEeCCCeEEEEeCCCCcC--------ceEEcCCCCcEEEE
Confidence            3578888886  4567777889999999999999999999999999999999875432        23334444443332


Q ss_pred             e---------------eEEEEecCCCccceeccc---CCcceEEEE---------------------EeCCCCEEEeecC
Q 042146           80 A---------------TIRLWDVPTATSLKTLIG---HTNYVFCIN---------------------FNPQSNRIVSDTF  120 (262)
Q Consensus        80 ~---------------~i~v~d~~~~~~~~~~~~---~~~~v~~~~---------------------~~~~~~~l~~~~~  120 (262)
                      .               .|++||+.+++.+..+..   +...+.+++                     |+|+++++++|+.
T Consensus       188 ~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~  267 (420)
T 3vl1_A          188 AIIDRGRNVLSASLDGTIRLWECGTGTTIHTFNRKENPHDGVNSIALFVGTDRQLHEISTSKKNNLEFGTYGKYVIAGHV  267 (420)
T ss_dssp             EEETTTTEEEEEETTSCEEEEETTTTEEEEEECBTTBTTCCEEEEEEEECCCSSCGGGCCCCCCTTCSSCTTEEEEEEET
T ss_pred             EEcCCCCEEEEEcCCCcEEEeECCCCceeEEeecCCCCCCCccEEEEecCCcceeeecccCcccceEEcCCCCEEEEEcC
Confidence            2               799999999988887764   344555555                     4688999999999


Q ss_pred             CCeEEEEECCCCeeeeeee-cCCCCeeeEEEccCCC-EEEEEeCCCeEEEEeCCC---------------------CCcc
Q 042146          121 NETIRIWDIKTGKCLKVLP-AHSDPVTAIDFNRDGT-MIVTSSYDGLYRILDAST---------------------PNGK  177 (262)
Q Consensus       121 dg~i~vwd~~~~~~~~~~~-~~~~~v~~~~~~~~~~-~l~~~~~dg~i~~~d~~~---------------------~~~~  177 (262)
                      ||.|++||+++++.+..+. .|...|.+++|+|++. +|++++.||.|++||++.                     ++++
T Consensus       268 dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~  347 (420)
T 3vl1_A          268 SGVITVHNVFSKEQTIQLPSKFTCSCNSLTVDGNNANYIYAGYENGMLAQWDLRSPECPVGEFLINEGTPINNVYFAAGA  347 (420)
T ss_dssp             TSCEEEEETTTCCEEEEECCTTSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCTTSCSEEEEESTTSCEEEEEEETTE
T ss_pred             CCeEEEEECCCCceeEEcccccCCCceeEEEeCCCCCEEEEEeCCCeEEEEEcCCCcCchhhhhccCCCCceEEEeCCCC
Confidence            9999999999988777664 4788999999999998 999999999999999976                     5678


Q ss_pred             EEEEEcCCCeEEEEecCCCceeeEEeccCCceeEEEEEEecCCCeeEEccccceEEEEEcCCCC---eEEEeeecCCCcE
Q 042146          178 FILVGTLDNTLRLWNYSTRKILKTYSGYTNSKYCISSTFSVTNGKYIVSHRDPVISVASHPAKN---IIASGALDNDRTM  254 (262)
Q Consensus       178 ~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~---~l~~~~~d~d~~i  254 (262)
                      +|++++.||.|++|++........+...             .....+.+|...|.+++|+|++.   .+++++  .+|.+
T Consensus       348 ~l~s~~~d~~v~iw~~~~~~~~~~~~~~-------------~~~~~~~~~~~~v~~~~~s~~~~~~g~l~a~g--~~g~~  412 (420)
T 3vl1_A          348 LFVSSGFDTSIKLDIISDPESERPAIEF-------------ETPTFLVSNDDAVSQFCYVSDDESNGEVLEVG--KNNFC  412 (420)
T ss_dssp             EEEEETTTEEEEEEEECCTTCCSCEECT-------------TSCEEECCSSCCCCEEEEECCSSSSCEEEEEE--TTTEE
T ss_pred             EEEEecCCccEEEEeccCCCCCccceec-------------cCccEEccCCcceEEEEEccCCCCcceEEEEc--CCceE
Confidence            9999999999999999875433222211             11222334889999999999999   666666  78999


Q ss_pred             EEEeeccC
Q 042146          255 KIWTQEKE  262 (262)
Q Consensus       255 ~iw~~~~~  262 (262)
                      .+|+++++
T Consensus       413 ~~~~~~~~  420 (420)
T 3vl1_A          413 ALYNLSNP  420 (420)
T ss_dssp             EEEESCC-
T ss_pred             EEEeccCC
Confidence            99998753

>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C

Probab=100.00  E-value=1.1e-34  Score=229.33  Aligned_cols=257  Identities=14%  Similarity=0.171  Sum_probs=185.6

Q ss_pred             CCCCceeeecc--cc--cceecccCcCceEEEEEccCCCeEEEecCCCeEEEeecCCCCCCC----CCCCCCCccccC--
Q 042146            2 SSDRSLESFRP--YT--LTQTLNGHLRAVSYVKFSHDGRLLTSSSAEKTLLTYSLSSISNFD----STPPSPLQKFTG--   71 (262)
Q Consensus         2 s~d~~i~~~~~--~~--~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~----~~~~~~~~~~~~--   71 (262)
                      +.|+.|..|+.  .+  ....+.+|...|.+++|+|++++|++++.||.|++||++......    ......+..+..  
T Consensus        27 ~~d~~v~i~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~~~  106 (372)
T 1k8k_C           27 PNNHEVHIYEKSGNKWVQVHELKEHNGQVTGVDWAPDSNRIVTCGTDRNAYVWTLKGRTWKPTLVILRINRAARCVRWAP  106 (372)
T ss_dssp             CSSSEEEEEEEETTEEEEEEEEECCSSCEEEEEEETTTTEEEEEETTSCEEEEEEETTEEEEEEECCCCSSCEEEEEECT
T ss_pred             eCCCEEEEEeCCCCcEEeeeeecCCCCcccEEEEeCCCCEEEEEcCCCeEEEEECCCCeeeeeEEeecCCCceeEEEECC
Confidence            36888888863  33  788899999999999999999999999999999999986643110    111111111111  


Q ss_pred             Ccccc---ccceeEEEEecCCCcc----ceecccCCcceEEEEEeCCCCEEEeecCCCeEEEEECC--------------
Q 042146           72 HEQGI---SDLATIRLWDVPTATS----LKTLIGHTNYVFCINFNPQSNRIVSDTFNETIRIWDIK--------------  130 (262)
Q Consensus        72 ~~~~v---~~~~~i~v~d~~~~~~----~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~--------------  130 (262)
                      ....+   ...+.|++||+..+..    ......|...|.+++|+|+++++++++.||.|++||++              
T Consensus       107 ~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~  186 (372)
T 1k8k_C          107 NEKKFAVGSGSRVISICYFEQENDWWVCKHIKKPIRSTVLSLDWHPNSVLLAAGSCDFKCRIFSAYIKEVEERPAPTPWG  186 (372)
T ss_dssp             TSSEEEEEETTSSEEEEEEETTTTEEEEEEECTTCCSCEEEEEECTTSSEEEEEETTSCEEEEECCCTTTSCCCCCBTTB
T ss_pred             CCCEEEEEeCCCEEEEEEecCCCcceeeeeeecccCCCeeEEEEcCCCCEEEEEcCCCCEEEEEcccccccccccccccc
Confidence            11111   1123799999988763    23336788999999999999999999999999999953              


Q ss_pred             ----CCeeeeeeecCCCCeeeEEEccCCCEEEEEeCCCeEEEEeCCC--------------------CCccEEEEEcCCC
Q 042146          131 ----TGKCLKVLPAHSDPVTAIDFNRDGTMIVTSSYDGLYRILDAST--------------------PNGKFILVGTLDN  186 (262)
Q Consensus       131 ----~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~d~~~--------------------~~~~~l~~~~~dg  186 (262)
                          .++.+..+..|...|.+++|+|++++|++++.|+.|++||++.                    +++.++++| .|+
T Consensus       187 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~d~  265 (372)
T 1k8k_C          187 SKMPFGELMFESSSSCGWVHGVCFSANGSRVAWVSHDSTVCLADADKKMAVATLASETLPLLAVTFITESSLVAAG-HDC  265 (372)
T ss_dssp             SCCCTTCEEEECCCCSSCEEEEEECSSSSEEEEEETTTEEEEEEGGGTTEEEEEECSSCCEEEEEEEETTEEEEEE-TTS
T ss_pred             cccchhhheEecCCCCCeEEEEEECCCCCEEEEEeCCCEEEEEECCCCceeEEEccCCCCeEEEEEecCCCEEEEE-eCC
Confidence                6778888889999999999999999999999999999999875                    678888877 899


Q ss_pred             eEEEEecCC--Cc--eeeEEeccCCceeEEEE---EE---e--------cCC-CeeEEccccceEEEEEc-CCC---CeE
Q 042146          187 TLRLWNYST--RK--ILKTYSGYTNSKYCISS---TF---S--------VTN-GKYIVSHRDPVISVASH-PAK---NII  243 (262)
Q Consensus       187 ~i~i~d~~~--~~--~~~~~~~~~~~~~~~~~---~~---~--------~~~-~~~~~~~~~~v~~~~~~-p~~---~~l  243 (262)
                      .|++|+++.  ++  ++..+..+.........   .+   .        +.. ..+..+|..+|++++|+ +++   .+|
T Consensus       266 ~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~g~~~~~l  345 (372)
T 1k8k_C          266 FPVLFTYDSAAGKLSFGGRLDVPKQSSQRGLTARERFQNLDKKASSEGSAAAGAGLDSLHKNSVSQISVLSGGKAKCSQF  345 (372)
T ss_dssp             SCEEEEEETTTTEEEECCCCCCC--------CHHHHHHHCCCCC---------CCCSSSSSSCEEEEEEEESTTTSCSEE
T ss_pred             eEEEEEccCcCceEEEeeccCccccchhhhcchhhhhhhcccccccccCccccccccccccCCcceeEEecCCCcceeeE
Confidence            999999987  53  22222111000000000   00   0        000 11112599999999976 666   999


Q ss_pred             EEeeecCCCcEEEEeecc
Q 042146          244 ASGALDNDRTMKIWTQEK  261 (262)
Q Consensus       244 ~~~~~d~d~~i~iw~~~~  261 (262)
                      ++++  .||.|++|+++.
T Consensus       346 ~s~~--~Dg~i~~W~~~~  361 (372)
T 1k8k_C          346 CTTG--MDGGMSIWDVRS  361 (372)
T ss_dssp             EEEE--TTSEEEEEEHHH
T ss_pred             EEec--CCCceEEEEecC
Confidence            9999  899999999853

>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}

Probab=100.00  E-value=8.6e-34  Score=222.88  Aligned_cols=245  Identities=16%  Similarity=0.259  Sum_probs=181.6

Q ss_pred             CCceeeecc--ccccee-cccCcCceEEEEEccC---CCeEEEecCCCeEEEeecCCCCCCCCCCCCCCccccCCccccc
Q 042146            4 DRSLESFRP--YTLTQT-LNGHLRAVSYVKFSHD---GRLLTSSSAEKTLLTYSLSSISNFDSTPPSPLQKFTGHEQGIS   77 (262)
Q Consensus         4 d~~i~~~~~--~~~~~~-~~~h~~~v~~~~~~~~---~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~   77 (262)
                      |+++..|+.  .+.... ..+|..+|.+++|+|+   +++|++|+.||.|++||+.....       ....+.+|...+.
T Consensus        43 d~~v~iw~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~-------~~~~~~~~~~~v~  115 (357)
T 3i2n_A           43 TGVIQLYEIQHGDLKLLREIEKAKPIKCGTFGATSLQQRYLATGDFGGNLHIWNLEAPEM-------PVYSVKGHKEIIN  115 (357)
T ss_dssp             CEEEEEEEECSSSEEEEEEEEESSCEEEEECTTCCTTTCCEEEEETTSCEEEECTTSCSS-------CSEEECCCSSCEE
T ss_pred             CcEEEEEeCCCCcccceeeecccCcEEEEEEcCCCCCCceEEEecCCCeEEEEeCCCCCc-------cEEEEEecccceE
Confidence            888888863  333222 3379999999999998   69999999999999999876431       2222333333322


Q ss_pred             c---------------------ceeEEEEecCCCc-cceecccCCc----ceEEEE----EeCCCCEEEeecCCCeEEEE
Q 042146           78 D---------------------LATIRLWDVPTAT-SLKTLIGHTN----YVFCIN----FNPQSNRIVSDTFNETIRIW  127 (262)
Q Consensus        78 ~---------------------~~~i~v~d~~~~~-~~~~~~~~~~----~v~~~~----~~~~~~~l~~~~~dg~i~vw  127 (262)
                      .                     .+.|++||+.+++ .+..+..|..    .+.+++    |+|+++++++++.||.|++|
T Consensus       116 ~~~~~~~~~~s~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~d~~i~i~  195 (357)
T 3i2n_A          116 AIDGIGGLGIGEGAPEIVTGSRDGTVKVWDPRQKDDPVANMEPVQGENKRDCWTVAFGNAYNQEERVVCAGYDNGDIKLF  195 (357)
T ss_dssp             EEEEESGGGCC-CCCEEEEEETTSCEEEECTTSCSSCSEEECCCTTSCCCCEEEEEEECCCC-CCCEEEEEETTSEEEEE
T ss_pred             EEeeccccccCCCccEEEEEeCCCeEEEEeCCCCCCcceeccccCCCCCCceEEEEEEeccCCCCCEEEEEccCCeEEEE
Confidence            2                     2289999999887 6666665544    799998    67899999999999999999


Q ss_pred             ECCCCeeeeeeecCCCCeeeEEEcc---CCCEEEEEeCCCeEEEEeCCC-------------------------CCcc-E
Q 042146          128 DIKTGKCLKVLPAHSDPVTAIDFNR---DGTMIVTSSYDGLYRILDAST-------------------------PNGK-F  178 (262)
Q Consensus       128 d~~~~~~~~~~~~~~~~v~~~~~~~---~~~~l~~~~~dg~i~~~d~~~-------------------------~~~~-~  178 (262)
                      |+++++.... ..|...|.+++|+|   ++.+|++++.||.|++||++.                         |+++ +
T Consensus       196 d~~~~~~~~~-~~~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~  274 (357)
T 3i2n_A          196 DLRNMALRWE-TNIKNGVCSLEFDRKDISMNKLVATSLEGKFHVFDMRTQHPTKGFASVSEKAHKSTVWQVRHLPQNREL  274 (357)
T ss_dssp             ETTTTEEEEE-EECSSCEEEEEESCSSSSCCEEEEEESTTEEEEEEEEEEETTTEEEEEEEECCSSCEEEEEEETTEEEE
T ss_pred             ECccCceeee-cCCCCceEEEEcCCCCCCCCEEEEECCCCeEEEEeCcCCCcccceeeeccCCCcCCEEEEEECCCCCcE
Confidence            9999887555 56889999999999   899999999999999999764                         6777 8


Q ss_pred             EEEEcCCCeEEEEecCCCceeeEEeccCCceeEEEEEEecCCCeeEEccccceEEEEEcCCCCeEE-EeeecCCCcEEEE
Q 042146          179 ILVGTLDNTLRLWNYSTRKILKTYSGYTNSKYCISSTFSVTNGKYIVSHRDPVISVASHPAKNIIA-SGALDNDRTMKIW  257 (262)
Q Consensus       179 l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~-~~~~d~d~~i~iw  257 (262)
                      |++++.||.|++||++++................   -.......+.+|..+|.+++|+|++++|+ +++  .||.|++|
T Consensus       275 l~~~~~dg~i~iwd~~~~~~~~~~~~~g~~~~~~---~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~s~~--~d~~i~iw  349 (357)
T 3i2n_A          275 FLTAGGAGGLHLWKYEYPIQRSKKDSEGIEMGVA---GSVSLLQNVTLSTQPISSLDWSPDKRGLCVCSS--FDQTVRVL  349 (357)
T ss_dssp             EEEEETTSEEEEEEEECCSCC--CCTTSCCCCCC---CEEEEEEEEECCSSCEEEEEECSSSTTEEEEEE--TTSEEEEE
T ss_pred             EEEEeCCCcEEEeecCCCcccccccCCCCccccc---cccceeeccccCCCCeeEEEEcCCCCeEEEEec--CCCcEEEE
Confidence            9999999999999998765432221111000000   00000001223889999999999999998 788  89999999


Q ss_pred             eecc
Q 042146          258 TQEK  261 (262)
Q Consensus       258 ~~~~  261 (262)
                      ++.+
T Consensus       350 ~~~~  353 (357)
T 3i2n_A          350 IVTK  353 (357)
T ss_dssp             EECC
T ss_pred             ECCC
Confidence            9864

>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A

Probab=100.00  E-value=8.4e-34  Score=226.91  Aligned_cols=210  Identities=21%  Similarity=0.360  Sum_probs=175.2

Q ss_pred             CCCCceeeeccc------ccceecccCcCceEEEEEcc-CCCeEEEecCCCeEEEeecCCCCCCCCCCCCCCccccCCcc
Q 042146            2 SSDRSLESFRPY------TLTQTLNGHLRAVSYVKFSH-DGRLLTSSSAEKTLLTYSLSSISNFDSTPPSPLQKFTGHEQ   74 (262)
Q Consensus         2 s~d~~i~~~~~~------~~~~~~~~h~~~v~~~~~~~-~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~   74 (262)
                      +.||.|..|+..      .....+.+|.++|++++|+| ++++|++|+.||+|++||+.......               
T Consensus        54 ~~~g~i~v~~~~~~~~~~~~~~~~~~h~~~V~~~~~~p~~~~~l~s~s~dg~v~vw~~~~~~~~~---------------  118 (402)
T 2aq5_A           54 SGGGAFLVLPLGKTGRVDKNVPLVCGHTAPVLDIAWCPHNDNVIASGSEDCTVMVWEIPDGGLVL---------------  118 (402)
T ss_dssp             SSSCCEEEEETTCCEECCTTCCCBCCCSSCEEEEEECTTCTTEEEEEETTSEEEEEECCTTCCSS---------------
T ss_pred             cCCCEEEEEECccCCCCCCCCceEecCCCCEEEEEeCCCCCCEEEEEeCCCeEEEEEccCCCCcc---------------
Confidence            458888888632      34567889999999999999 99999999999999999876421100               


Q ss_pred             ccccceeEEEEecCCCccceecccCCcceEEEEEeCCC-CEEEeecCCCeEEEEECCCCeeeeee--ecCCCCeeeEEEc
Q 042146           75 GISDLATIRLWDVPTATSLKTLIGHTNYVFCINFNPQS-NRIVSDTFNETIRIWDIKTGKCLKVL--PAHSDPVTAIDFN  151 (262)
Q Consensus        75 ~v~~~~~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~dg~i~vwd~~~~~~~~~~--~~~~~~v~~~~~~  151 (262)
                                   ...+.+..+.+|...|.+++|+|++ ++|++++.||.|++||+++++.+..+  ..|...|.+++|+
T Consensus       119 -------------~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~  185 (402)
T 2aq5_A          119 -------------PLREPVITLEGHTKRVGIVAWHPTAQNVLLSAGCDNVILVWDVGTGAAVLTLGPDVHPDTIYSVDWS  185 (402)
T ss_dssp             -------------CBCSCSEEEECCSSCEEEEEECSSBTTEEEEEETTSCEEEEETTTTEEEEEECTTTCCSCEEEEEEC
T ss_pred             -------------ccCCceEEecCCCCeEEEEEECcCCCCEEEEEcCCCEEEEEECCCCCccEEEecCCCCCceEEEEEC
Confidence                         0114566778899999999999998 69999999999999999999999998  7899999999999


Q ss_pred             cCCCEEEEEeCCCeEEEEeCCC----------------------CCccEEEEE---cCCCeEEEEecCCCce-eeEEecc
Q 042146          152 RDGTMIVTSSYDGLYRILDAST----------------------PNGKFILVG---TLDNTLRLWNYSTRKI-LKTYSGY  205 (262)
Q Consensus       152 ~~~~~l~~~~~dg~i~~~d~~~----------------------~~~~~l~~~---~~dg~i~i~d~~~~~~-~~~~~~~  205 (262)
                      |++++|++++.||.|++||++.                      +++.+|++|   +.|+.|++||+++++. +..... 
T Consensus       186 ~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~~~d~~i~iwd~~~~~~~~~~~~~-  264 (402)
T 2aq5_A          186 RDGALICTSCRDKRVRVIEPRKGTVVAEKDRPHEGTRPVHAVFVSEGKILTTGFSRMSERQVALWDTKHLEEPLSLQEL-  264 (402)
T ss_dssp             TTSSCEEEEETTSEEEEEETTTTEEEEEEECSSCSSSCCEEEECSTTEEEEEEECTTCCEEEEEEETTBCSSCSEEEEC-
T ss_pred             CCCCEEEEEecCCcEEEEeCCCCceeeeeccCCCCCcceEEEEcCCCcEEEEeccCCCCceEEEEcCccccCCceEEec-
Confidence            9999999999999999999876                      678899999   7999999999998765 222221 


Q ss_pred             CCceeEEEEEEecCCCeeEEccccceEEEEEcCCCCeEEEeeecCCCcEEEEeecc
Q 042146          206 TNSKYCISSTFSVTNGKYIVSHRDPVISVASHPAKNIIASGALDNDRTMKIWTQEK  261 (262)
Q Consensus       206 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~d~d~~i~iw~~~~  261 (262)
                                          .|...+.+++|+|++++|++++. .||.|++|++..
T Consensus       265 --------------------~~~~~v~~~~~s~~~~~l~~~g~-~dg~i~i~d~~~  299 (402)
T 2aq5_A          265 --------------------DTSSGVLLPFFDPDTNIVYLCGK-GDSSIRYFEITS  299 (402)
T ss_dssp             --------------------CCCSSCEEEEEETTTTEEEEEET-TCSCEEEEEECS
T ss_pred             --------------------cCCCceeEEEEcCCCCEEEEEEc-CCCeEEEEEecC
Confidence                                16778999999999999875442 599999999874

>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*

Probab=100.00  E-value=1.7e-33  Score=228.07  Aligned_cols=245  Identities=25%  Similarity=0.505  Sum_probs=201.2

Q ss_pred             CCCCceeeec--ccccceecccCcCceEEEEEccCCCeEEEecCCCeEEEeecCCCCCCCCCCCCCCccccCCcccccc-
Q 042146            2 SSDRSLESFR--PYTLTQTLNGHLRAVSYVKFSHDGRLLTSSSAEKTLLTYSLSSISNFDSTPPSPLQKFTGHEQGISD-   78 (262)
Q Consensus         2 s~d~~i~~~~--~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~-   78 (262)
                      +.|++|..|+  ..+.+..+.+|.++|.+++|+  +++|++|+.||+|++||+++...        ...+.+|...+.. 
T Consensus       136 ~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~--~~~l~s~~~dg~i~vwd~~~~~~--------~~~~~~h~~~v~~~  205 (445)
T 2ovr_B          136 SDDNTLKVWSAVTGKCLRTLVGHTGGVWSSQMR--DNIIISGSTDRTLKVWNAETGEC--------IHTLYGHTSTVRCM  205 (445)
T ss_dssp             ETTSCEEEEETTTCCEEEECCCCSSCEEEEEEE--TTEEEEEETTSCEEEEETTTTEE--------EEEECCCSSCEEEE
T ss_pred             ECCCcEEEEECCCCcEEEEEcCCCCCEEEEEec--CCEEEEEeCCCeEEEEECCcCcE--------EEEECCCCCcEEEE
Confidence            4688888886  567888999999999999997  56999999999999999876432        2223333333322 


Q ss_pred             ------------ceeEEEEecCCCccceecccCCcceEEEEEeCCCCEEEeecCCCeEEEEECCCCeeeeeeecCCCCee
Q 042146           79 ------------LATIRLWDVPTATSLKTLIGHTNYVFCINFNPQSNRIVSDTFNETIRIWDIKTGKCLKVLPAHSDPVT  146 (262)
Q Consensus        79 ------------~~~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~v~  146 (262)
                                  .+.|++||+.+++.+..+.+|...|.++++  +++++++|+.||.|++||+++++++..+..|...|.
T Consensus       206 ~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~--~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~  283 (445)
T 2ovr_B          206 HLHEKRVVSGSRDATLRVWDIETGQCLHVLMGHVAAVRCVQY--DGRRVVSGAYDFMVKVWDPETETCLHTLQGHTNRVY  283 (445)
T ss_dssp             EEETTEEEEEETTSEEEEEESSSCCEEEEEECCSSCEEEEEE--CSSCEEEEETTSCEEEEEGGGTEEEEEECCCSSCEE
T ss_pred             EecCCEEEEEeCCCEEEEEECCCCcEEEEEcCCcccEEEEEE--CCCEEEEEcCCCEEEEEECCCCcEeEEecCCCCceE
Confidence                        238999999999999999999999999999  688999999999999999999999999999999999


Q ss_pred             eEEEccCCCEEEEEeCCCeEEEEeCCC------------------CCccEEEEEcCCCeEEEEecCCCceeeEEec---c
Q 042146          147 AIDFNRDGTMIVTSSYDGLYRILDAST------------------PNGKFILVGTLDNTLRLWNYSTRKILKTYSG---Y  205 (262)
Q Consensus       147 ~~~~~~~~~~l~~~~~dg~i~~~d~~~------------------~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~---~  205 (262)
                      +++|  ++.++++++.||.|++||+++                  ++++++++|+.||.|++||+++++++..+..   +
T Consensus       284 ~~~~--~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~  361 (445)
T 2ovr_B          284 SLQF--DGIHVVSGSLDTSIRVWDVETGNCIHTLTGHQSLTSGMELKDNILVSGNADSTVKIWDIKTGQCLQTLQGPNKH  361 (445)
T ss_dssp             EEEE--CSSEEEEEETTSCEEEEETTTCCEEEEECCCCSCEEEEEEETTEEEEEETTSCEEEEETTTCCEEEEECSTTSC
T ss_pred             EEEE--CCCEEEEEeCCCeEEEEECCCCCEEEEEcCCcccEEEEEEeCCEEEEEeCCCeEEEEECCCCcEEEEEccCCCC
Confidence            9999  788999999999999999876                  4678999999999999999999999999886   5


Q ss_pred             CCceeEEEE---------------EEecCCCeeEE--------ccccceEEEEEcCCCCeEEEeeecCCCc----EEEEe
Q 042146          206 TNSKYCISS---------------TFSVTNGKYIV--------SHRDPVISVASHPAKNIIASGALDNDRT----MKIWT  258 (262)
Q Consensus       206 ~~~~~~~~~---------------~~~~~~~~~~~--------~~~~~v~~~~~~p~~~~l~~~~~d~d~~----i~iw~  258 (262)
                      ...+.++..               .+....+..+.        +|.+.|.+++|+|++.++++++  .||+    |.+||
T Consensus       362 ~~~v~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~la~~~--~dg~~~~~l~v~d  439 (445)
T 2ovr_B          362 QSAVTCLQFNKNFVITSSDDGTVKLWDLKTGEFIRNLVTLESGGSGGVVWRIRASNTKLVCAVGS--RNGTEETKLLVLD  439 (445)
T ss_dssp             SSCEEEEEECSSEEEEEETTSEEEEEETTTCCEEEEEEECTTGGGTCEEEEEEECSSEEEEEEEC--SSSSSCCEEEEEE
T ss_pred             CCCEEEEEECCCEEEEEeCCCeEEEEECCCCceeeeeeccccCCCCceEEEEEecCCEEEEEEcc--cCCCCccEEEEEE
Confidence            555555442               11112222111        3677899999999999999999  8897    99999


Q ss_pred             eccC
Q 042146          259 QEKE  262 (262)
Q Consensus       259 ~~~~  262 (262)
                      ++.+
T Consensus       440 f~~~  443 (445)
T 2ovr_B          440 FDVD  443 (445)
T ss_dssp             CCCC
T ss_pred             CCCC
Confidence            8753

>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*

Probab=100.00  E-value=3.2e-34  Score=227.82  Aligned_cols=236  Identities=14%  Similarity=0.222  Sum_probs=182.1

Q ss_pred             cccccceecccCcCceEEEEEccCC-CeEEEecCCCeEEEeecCCCCCCCCC----CCCCCccccCCc---ccc---ccc
Q 042146           11 RPYTLTQTLNGHLRAVSYVKFSHDG-RLLTSSSAEKTLLTYSLSSISNFDST----PPSPLQKFTGHE---QGI---SDL   79 (262)
Q Consensus        11 ~~~~~~~~~~~h~~~v~~~~~~~~~-~~l~s~~~d~~i~iw~~~~~~~~~~~----~~~~~~~~~~~~---~~v---~~~   79 (262)
                      .++++...+.+|...|++++|+|++ ++|++|+.||.|++||+.........    ....+..+....   ..+   ...
T Consensus        61 ~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d  140 (383)
T 3ei3_B           61 KSYKLHRTASPFDRRVTSLEWHPTHPTTVAVGSKGGDIILWDYDVQNKTSFIQGMGPGDAITGMKFNQFNTNQLFVSSIR  140 (383)
T ss_dssp             TTCEEEEEECCCSSCEEEEEECSSCTTEEEEEEBTSCEEEEETTSTTCEEEECCCSTTCBEEEEEEETTEEEEEEEEETT
T ss_pred             cccceEEeccCCCCCEEEEEECCCCCCEEEEEcCCCeEEEEeCCCcccceeeecCCcCCceeEEEeCCCCCCEEEEEeCC
Confidence            4566778889999999999999999 99999999999999999754322111    111111111111   111   122


Q ss_pred             eeEEEEecCCCccceeccc---CCcceEEEEEeCCCCEEEeecCCCeEEEEECCCCeeeeeeecCCCCeeeEEEccCCC-
Q 042146           80 ATIRLWDVPTATSLKTLIG---HTNYVFCINFNPQSNRIVSDTFNETIRIWDIKTGKCLKVLPAHSDPVTAIDFNRDGT-  155 (262)
Q Consensus        80 ~~i~v~d~~~~~~~~~~~~---~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~-  155 (262)
                      +.|++||+.. ..+..+..   |...|.+++|+|++++|++|+.||.|++||+ +++++..+..|...|.+++|+|+++ 
T Consensus       141 ~~i~iwd~~~-~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~-~~~~~~~~~~h~~~v~~~~~~~~~~~  218 (383)
T 3ei3_B          141 GATTLRDFSG-SVIQVFAKTDSWDYWYCCVDVSVSRQMLATGDSTGRLLLLGL-DGHEIFKEKLHKAKVTHAEFNPRCDW  218 (383)
T ss_dssp             TEEEEEETTS-CEEEEEECCCCSSCCEEEEEEETTTTEEEEEETTSEEEEEET-TSCEEEEEECSSSCEEEEEECSSCTT
T ss_pred             CEEEEEECCC-CceEEEeccCCCCCCeEEEEECCCCCEEEEECCCCCEEEEEC-CCCEEEEeccCCCcEEEEEECCCCCC
Confidence            3899999985 44444443   4488999999999999999999999999999 5778888999999999999999998 


Q ss_pred             EEEEEeCCCeEEEEeCCC-----------------------C-CccEEEEEcCCCeEEEEecCCCceeeEEeccCCcee-
Q 042146          156 MIVTSSYDGLYRILDAST-----------------------P-NGKFILVGTLDNTLRLWNYSTRKILKTYSGYTNSKY-  210 (262)
Q Consensus       156 ~l~~~~~dg~i~~~d~~~-----------------------~-~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~-  210 (262)
                      +|++++.|+.|++||++.                       | ++.+|++++.|+.|++||+++++.+..+..+..... 
T Consensus       219 ~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~  298 (383)
T 3ei3_B          219 LMATSSVDATVKLWDLRNIKDKNSYIAEMPHEKPVNAAYFNPTDSTKLLTTDQRNEIRVYSSYDWSKPDQIIIHPHRQFQ  298 (383)
T ss_dssp             EEEEEETTSEEEEEEGGGCCSTTCEEEEEECSSCEEEEEECTTTSCEEEEEESSSEEEEEETTBTTSCSEEEECCBCCCT
T ss_pred             EEEEEeCCCEEEEEeCCCCCcccceEEEecCCCceEEEEEcCCCCCEEEEEcCCCcEEEEECCCCccccccccccccccc
Confidence            999999999999999874                       7 899999999999999999999988888776542211 


Q ss_pred             ---EEEEEEecCCCeeEEccccceEEEEEcCCCCeEEEeeecCCCcEEEEeecc
Q 042146          211 ---CISSTFSVTNGKYIVSHRDPVISVASHPAKNIIASGALDNDRTMKIWTQEK  261 (262)
Q Consensus       211 ---~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~d~d~~i~iw~~~~  261 (262)
                         .+...|.         ....+..++|+|++++  +++  .|+.|++||+..
T Consensus       299 ~~~~~~~~~~---------p~~~~~~~~~s~dg~~--s~s--~d~~i~iwd~~~  339 (383)
T 3ei3_B          299 HLTPIKATWH---------PMYDLIVAGRYPDDQL--LLN--DKRTIDIYDANS  339 (383)
T ss_dssp             TSCCCCCEEC---------SSSSEEEEECBCCTTT--CTT--CCCCEEEEETTT
T ss_pred             cccceEEecc---------CCCCceEEEecCCccc--ccC--CCCeEEEEecCC
Confidence               1111221         3456777888898888  777  899999999864

>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae}

Probab=100.00  E-value=6.1e-35  Score=235.87  Aligned_cols=244  Identities=14%  Similarity=0.203  Sum_probs=184.2

Q ss_pred             ccccceec-ccCcCceEEEEEcc-CCCeEEEecCCCeEEEeecCCCCCCCCCCCCCCccccCCcccccc-----------
Q 042146           12 PYTLTQTL-NGHLRAVSYVKFSH-DGRLLTSSSAEKTLLTYSLSSISNFDSTPPSPLQKFTGHEQGISD-----------   78 (262)
Q Consensus        12 ~~~~~~~~-~~h~~~v~~~~~~~-~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~-----------   78 (262)
                      ..+++..+ ++|.++|++++|+| ++++|++|+.||+|++||+........  ......+ .|...+..           
T Consensus        51 ~g~~~~~~~~~h~~~V~~~~~s~~~~~~l~s~s~dg~v~vwd~~~~~~~~~--~~~~~~~-~h~~~v~~~~~~~~~~~l~  127 (437)
T 3gre_A           51 RGKLIATLMENEPNSITSSAVSPGETPYLITGSDQGVIKIWNLKEIIVGEV--YSSSLTY-DCSSTVTQITMIPNFDAFA  127 (437)
T ss_dssp             CCCEEEEECTTTTSCEEEEEEECSSSCEEEEEETTSEEEEEEHHHHHTTCC--CSCSEEE-ECSSCEEEEEECTTSSEEE
T ss_pred             cceEEeeeccCCCCceEEEEECCCCCCEEEEecCCceEEEeECcccccCcc--cceeeec-cCCCCEEEEEEeCCCCEEE
Confidence            34566777 89999999999999 999999999999999999865211110  0000111 12222222           


Q ss_pred             ----ceeEEEEecC---CCccceecc----------c--CCcceEEEE--EeCCCCEEEeecCCCeEEEEECCCCeeeee
Q 042146           79 ----LATIRLWDVP---TATSLKTLI----------G--HTNYVFCIN--FNPQSNRIVSDTFNETIRIWDIKTGKCLKV  137 (262)
Q Consensus        79 ----~~~i~v~d~~---~~~~~~~~~----------~--~~~~v~~~~--~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~  137 (262)
                          .+.|++||++   +++......          .  +...+.++.  ++|+++++++|+.||.|++||+++++++..
T Consensus       128 s~s~dg~i~vwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~  207 (437)
T 3gre_A          128 VSSKDGQIIVLKVNHYQQESEVKFLNCECIRKINLKNFGKNEYAVRMRAFVNEEKSLLVALTNLSRVIIFDIRTLERLQI  207 (437)
T ss_dssp             EEETTSEEEEEEEEEEEETTEEEEEEEEEEEEEEGGGGSSCCCEEEEEEEECSSCEEEEEEETTSEEEEEETTTCCEEEE
T ss_pred             EEeCCCEEEEEEeccccCCceeeccccceeEEEEccCcccccCceEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCeeeEE
Confidence                2389999995   444433322          1  455677777  557899999999999999999999999999


Q ss_pred             eec--CCCCeeeEEEccCCCEEEEEeCCCeEEEEeCCC-------------------------CCccEEEEEcCCCeEEE
Q 042146          138 LPA--HSDPVTAIDFNRDGTMIVTSSYDGLYRILDAST-------------------------PNGKFILVGTLDNTLRL  190 (262)
Q Consensus       138 ~~~--~~~~v~~~~~~~~~~~l~~~~~dg~i~~~d~~~-------------------------~~~~~l~~~~~dg~i~i  190 (262)
                      +..  |...|++++|+|++++|++++.||.|++||++.                         +++.+|++|+.||.|++
T Consensus       208 ~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~s~~~~~l~s~~~dg~i~i  287 (437)
T 3gre_A          208 IENSPRHGAVSSICIDEECCVLILGTTRGIIDIWDIRFNVLIRSWSFGDHAPITHVEVCQFYGKNSVIVVGGSSKTFLTI  287 (437)
T ss_dssp             EECCGGGCCEEEEEECTTSCEEEEEETTSCEEEEETTTTEEEEEEBCTTCEEEEEEEECTTTCTTEEEEEEESTTEEEEE
T ss_pred             EccCCCCCceEEEEECCCCCEEEEEcCCCeEEEEEcCCccEEEEEecCCCCceEEEEeccccCCCccEEEEEcCCCcEEE
Confidence            988  889999999999999999999999999999876                         45779999999999999


Q ss_pred             EecCCCceeeEEeccCCceeEEEEEEecC--CCeeEEc--cccceEEEEEcCCCCeEEEeeecCCCcEEEEeecc
Q 042146          191 WNYSTRKILKTYSGYTNSKYCISSTFSVT--NGKYIVS--HRDPVISVASHPAKNIIASGALDNDRTMKIWTQEK  261 (262)
Q Consensus       191 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~--~~~~v~~~~~~p~~~~l~~~~~d~d~~i~iw~~~~  261 (262)
                      ||+++++++..+.++...+..........  ....+.+  |...|++++|+ ++++|++++  .|+.|++|++.+
T Consensus       288 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~~l~~~-~~~~l~s~~--~d~~i~~wd~~~  359 (437)
T 3gre_A          288 WNFVKGHCQYAFINSDEQPSMEHFLPIEKGLEELNFCGIRSLNALSTISVS-NDKILLTDE--ATSSIVMFSLNE  359 (437)
T ss_dssp             EETTTTEEEEEEESSSSCCCGGGGSCBCSSGGGCCCCCCCSGGGGCCEEEE-TTEEEEEEG--GGTEEEEEETTC
T ss_pred             EEcCCCcEEEEEEcCCCCCccceecccccccccceecccccCCceEEEEEC-CceEEEecC--CCCeEEEEECCC
Confidence            99999999999988765443221111000  0001122  78889999999 779999999  899999999864

>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*

Probab=100.00  E-value=9.8e-34  Score=230.48  Aligned_cols=223  Identities=23%  Similarity=0.460  Sum_probs=186.5

Q ss_pred             CCCCceeeec--ccccceecccCcCceEEEEEccCCCeEEEecCCCeEEEeecCCCCCCCCCCCCCCccccCCccccc--
Q 042146            2 SSDRSLESFR--PYTLTQTLNGHLRAVSYVKFSHDGRLLTSSSAEKTLLTYSLSSISNFDSTPPSPLQKFTGHEQGIS--   77 (262)
Q Consensus         2 s~d~~i~~~~--~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~--   77 (262)
                      +.|++|..|+  ..+.+..+.+|.++|.+++|+|++ +|++|+.||+|++||+++....        ..+.+|...+.  
T Consensus       139 s~dg~i~vwd~~~~~~~~~~~~h~~~V~~l~~~~~~-~l~s~s~dg~i~vwd~~~~~~~--------~~~~~h~~~v~~l  209 (464)
T 3v7d_B          139 ADDKMIRVYDSINKKFLLQLSGHDGGVWALKYAHGG-ILVSGSTDRTVRVWDIKKGCCT--------HVFEGHNSTVRCL  209 (464)
T ss_dssp             ETTSCEEEEETTTTEEEEEECCCSSCEEEEEECSTT-EEEEEETTSCEEEEETTTTEEE--------EEECCCSSCEEEE
T ss_pred             cCCCcEEEEECCCCcEEEEEeCCCcCEEEEEEcCCC-EEEEEeCCCCEEEEECCCCcEE--------EEECCCCCccEEE
Confidence            4689999886  567888999999999999999988 8999999999999998764321        22222222222  


Q ss_pred             ---------------cceeEEEEecCCCcc-----------------------ceecccCCcceEEEEEeCCCCEEEeec
Q 042146           78 ---------------DLATIRLWDVPTATS-----------------------LKTLIGHTNYVFCINFNPQSNRIVSDT  119 (262)
Q Consensus        78 ---------------~~~~i~v~d~~~~~~-----------------------~~~~~~~~~~v~~~~~~~~~~~l~~~~  119 (262)
                                     ..+.|++||+.++..                       +..+.+|...+.++  +++++++++|+
T Consensus       210 ~~~~~~~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~--~~~~~~l~~~~  287 (464)
T 3v7d_B          210 DIVEYKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHMASVRTV--SGHGNIVVSGS  287 (464)
T ss_dssp             EEEESSSCEEEEEEETTSCEEEEECCCCCCC------CCSSEEESCGGGCTTEEEEECCCSSCEEEE--EEETTEEEEEE
T ss_pred             EEecCCCCCEEEEEcCCCcEEEeeCCCCcccccccccCCcceEeeccCCCeEEEEEccCccceEEEE--cCCCCEEEEEe
Confidence                           223899999987653                       33566788888877  56799999999


Q ss_pred             CCCeEEEEECCCCeeeeeeecCCCCeeeEEEccCCCEEEEEeCCCeEEEEeCCC------------------CCccEEEE
Q 042146          120 FNETIRIWDIKTGKCLKVLPAHSDPVTAIDFNRDGTMIVTSSYDGLYRILDAST------------------PNGKFILV  181 (262)
Q Consensus       120 ~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~d~~~------------------~~~~~l~~  181 (262)
                      .||.|++||+++++++..+.+|...|.+++|+|+++++++++.||.|++||+++                  .++++|++
T Consensus       288 ~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~l~s  367 (464)
T 3v7d_B          288 YDNTLIVWDVAQMKCLYILSGHTDRIYSTIYDHERKRCISASMDTTIRIWDLENGELMYTLQGHTALVGLLRLSDKFLVS  367 (464)
T ss_dssp             TTSCEEEEETTTTEEEEEECCCSSCEEEEEEETTTTEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECSSEEEE
T ss_pred             CCCeEEEEECCCCcEEEEecCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEEeCCCCcEEEEEEcCCEEEE
Confidence            999999999999999999999999999999999999999999999999999976                  45789999


Q ss_pred             EcCCCeEEEEecCCCceeeEEeccCCceeEEEEEEecCCCeeEEccccceEEEEEcCCCCeEEEeeecCCCcEEEEeecc
Q 042146          182 GTLDNTLRLWNYSTRKILKTYSGYTNSKYCISSTFSVTNGKYIVSHRDPVISVASHPAKNIIASGALDNDRTMKIWTQEK  261 (262)
Q Consensus       182 ~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~d~d~~i~iw~~~~  261 (262)
                      ++.||.|++||+++++......                       +...+..++|+|++.+|++++   ||.|++|++++
T Consensus       368 ~s~dg~v~vwd~~~~~~~~~~~-----------------------~~~~~~~~~~~~~~~~l~~~~---dg~i~iwd~~~  421 (464)
T 3v7d_B          368 AAADGSIRGWDANDYSRKFSYH-----------------------HTNLSAITTFYVSDNILVSGS---ENQFNIYNLRS  421 (464)
T ss_dssp             EETTSEEEEEETTTCCEEEEEE-----------------------CTTCCCEEEEEECSSEEEEEE---TTEEEEEETTT
T ss_pred             EeCCCcEEEEECCCCceeeeec-----------------------CCCCccEEEEEeCCCEEEEec---CCeEEEEECCC
Confidence            9999999999999877665554                       666788899999999999986   68999999864

>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}

Probab=100.00  E-value=1.2e-34  Score=229.70  Aligned_cols=202  Identities=14%  Similarity=0.214  Sum_probs=166.2

Q ss_pred             CCCCceeeecc--c--ccceecccCcCceEEEEEccCCCeEEEecCCCeEEEeecCCCCCCCCCCCCCCccccCCccccc
Q 042146            2 SSDRSLESFRP--Y--TLTQTLNGHLRAVSYVKFSHDGRLLTSSSAEKTLLTYSLSSISNFDSTPPSPLQKFTGHEQGIS   77 (262)
Q Consensus         2 s~d~~i~~~~~--~--~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~   77 (262)
                      +.|++|..|+.  .  +....+.+|.++|.+++|+|++++|++++.|++|++||+....                     
T Consensus        30 ~~d~~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~d~~v~vwd~~~~~---------------------   88 (377)
T 3dwl_C           30 TATNQVELYEQDGNGWKHARTFSDHDKIVTCVDWAPKSNRIVTCSQDRNAYVYEKRPDG---------------------   88 (377)
T ss_dssp             CSSSCBCEEEEETTEEEECCCBCCCSSCEEEEEECTTTCCEEEEETTSSEEEC---------------------------
T ss_pred             cCCCEEEEEEccCCceEEEEEEecCCceEEEEEEeCCCCEEEEEeCCCeEEEEEcCCCC---------------------
Confidence            36888888863  3  6788899999999999999999999999999999999765311                     


Q ss_pred             cceeEEEEecCCCccceecccCCcceEEEEEeCCCCEEEeecCCCeEEEEECCCCe---eeeeeec-CCCCeeeEEEccC
Q 042146           78 DLATIRLWDVPTATSLKTLIGHTNYVFCINFNPQSNRIVSDTFNETIRIWDIKTGK---CLKVLPA-HSDPVTAIDFNRD  153 (262)
Q Consensus        78 ~~~~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~---~~~~~~~-~~~~v~~~~~~~~  153 (262)
                                 .......+..|...|.+++|+|++++|++++.|+.|++||+++++   ....+.. |...|.+++|+|+
T Consensus        89 -----------~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~h~~~v~~~~~~~~  157 (377)
T 3dwl_C           89 -----------TWKQTLVLLRLNRAATFVRWSPNEDKFAVGSGARVISVCYFEQENDWWVSKHLKRPLRSTILSLDWHPN  157 (377)
T ss_dssp             -----------CCCCEEECCCCSSCEEEEECCTTSSCCEEEESSSCEEECCC-----CCCCEEECSSCCSCEEEEEECTT
T ss_pred             -----------ceeeeeEecccCCceEEEEECCCCCEEEEEecCCeEEEEEECCcccceeeeEeecccCCCeEEEEEcCC
Confidence                       012445667799999999999999999999999999999999876   3667777 9999999999999


Q ss_pred             CCEEEEEeCCCeEEEEeCC--------------------------C-----------CCccEEEEEcCCCeEEEEecCCC
Q 042146          154 GTMIVTSSYDGLYRILDAS--------------------------T-----------PNGKFILVGTLDNTLRLWNYSTR  196 (262)
Q Consensus       154 ~~~l~~~~~dg~i~~~d~~--------------------------~-----------~~~~~l~~~~~dg~i~i~d~~~~  196 (262)
                      +++|++++.|+.|++||++                          .           |++++|++++.||.|++||++++
T Consensus       158 ~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~i~iwd~~~~  237 (377)
T 3dwl_C          158 NVLLAAGCADRKAYVLSAYVRDVDAKPEASVWGSRLPFNTVCAEYPSGGWVHAVGFSPSGNALAYAGHDSSVTIAYPSAP  237 (377)
T ss_dssp             SSEEEEEESSSCEEEEEECCSSCC-CCCSCSSCSCCCEEEEEECCCCSSSEEEEEECTTSSCEEEEETTTEEC-CEECST
T ss_pred             CCEEEEEeCCCEEEEEEEEecccCCCccccccccccchhhhhhcccCCceEEEEEECCCCCEEEEEeCCCcEEEEECCCC
Confidence            9999999999999999974                          0           78999999999999999999998


Q ss_pred             ce----eeEEeccCCceeEEEEEEecCCCeeEEccccceEEEEEcCCCCeEEEeeecCCCcEEEEeec
Q 042146          197 KI----LKTYSGYTNSKYCISSTFSVTNGKYIVSHRDPVISVASHPAKNIIASGALDNDRTMKIWTQE  260 (262)
Q Consensus       197 ~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~d~d~~i~iw~~~  260 (262)
                      +.    +..+..                      |..+|.+++|+|++++|++++  .|+.+ +|+..
T Consensus       238 ~~~~~~~~~~~~----------------------~~~~v~~~~~s~~~~~l~~~~--~~~~~-~~~~~  280 (377)
T 3dwl_C          238 EQPPRALITVKL----------------------SQLPLRSLLWANESAIVAAGY--NYSPI-LLQGN  280 (377)
T ss_dssp             TSCEEECCCEEC----------------------SSSCEEEEEEEETTEEEEEES--SSSEE-EECCC
T ss_pred             CCcceeeEeecC----------------------CCCceEEEEEcCCCCEEEEEc--CCcEE-EEEeC
Confidence            87    666665                      888999999999999999987  55555 66654

>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1

Probab=100.00  E-value=7.4e-34  Score=229.51  Aligned_cols=220  Identities=22%  Similarity=0.453  Sum_probs=184.0

Q ss_pred             CCCCceeeec--ccccceecccCcCceEEEEEccCCCeEEEecCCCeEEEeecCCCCCCCCCCCCCCccccCCcccccc-
Q 042146            2 SSDRSLESFR--PYTLTQTLNGHLRAVSYVKFSHDGRLLTSSSAEKTLLTYSLSSISNFDSTPPSPLQKFTGHEQGISD-   78 (262)
Q Consensus         2 s~d~~i~~~~--~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~-   78 (262)
                      +.|++|..|+  ..+....+.+|.++|.+++|  ++++|++|+.||+|++||+.+...        ...+.+|...+.. 
T Consensus       150 ~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~--~~~~l~sg~~dg~i~vwd~~~~~~--------~~~~~~h~~~v~~l  219 (435)
T 1p22_A          150 LRDNTIKIWDKNTLECKRILTGHTGSVLCLQY--DERVIITGSSDSTVRVWDVNTGEM--------LNTLIHHCEAVLHL  219 (435)
T ss_dssp             ESSSCEEEEESSSCCEEEEECCCSSCEEEEEC--CSSEEEEEETTSCEEEEESSSCCE--------EEEECCCCSCEEEE
T ss_pred             eCCCeEEEEeCCCCeEEEEEcCCCCcEEEEEE--CCCEEEEEcCCCeEEEEECCCCcE--------EEEEcCCCCcEEEE
Confidence            3688888886  56678889999999999999  788999999999999999876432        2222233332222 


Q ss_pred             ------------ceeEEEEecCCCccc---eecccCCcceEEEEEeCCCCEEEeecCCCeEEEEECCCCeeeeeeecCCC
Q 042146           79 ------------LATIRLWDVPTATSL---KTLIGHTNYVFCINFNPQSNRIVSDTFNETIRIWDIKTGKCLKVLPAHSD  143 (262)
Q Consensus        79 ------------~~~i~v~d~~~~~~~---~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~  143 (262)
                                  .+.|++||+.++...   ..+.+|...|.++++  +++++++|+.||.|++||+++++.+..+..|..
T Consensus       220 ~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~--~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~  297 (435)
T 1p22_A          220 RFNNGMMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDF--DDKYIVSASGDRTIKVWNTSTCEFVRTLNGHKR  297 (435)
T ss_dssp             ECCTTEEEEEETTSCEEEEECSSSSCCEEEEEECCCSSCEEEEEE--ETTEEEEEETTSEEEEEETTTCCEEEEEECCSS
T ss_pred             EEcCCEEEEeeCCCcEEEEeCCCCCCceeeeEecCCCCcEEEEEe--CCCEEEEEeCCCeEEEEECCcCcEEEEEcCCCC
Confidence                        238999999988766   567889999999999  688999999999999999999999999999999


Q ss_pred             CeeeEEEccCCCEEEEEeCCCeEEEEeCCC------------------CCccEEEEEcCCCeEEEEecCCCc--------
Q 042146          144 PVTAIDFNRDGTMIVTSSYDGLYRILDAST------------------PNGKFILVGTLDNTLRLWNYSTRK--------  197 (262)
Q Consensus       144 ~v~~~~~~~~~~~l~~~~~dg~i~~~d~~~------------------~~~~~l~~~~~dg~i~i~d~~~~~--------  197 (262)
                      .|.++.++  ++++++|+.||.|++||+++                  .++.+|++|+.||.|++||+++++        
T Consensus       298 ~v~~~~~~--~~~l~~g~~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~  375 (435)
T 1p22_A          298 GIACLQYR--DRLVVSGSSDNTIRLWDIECGACLRVLEGHEELVRCIRFDNKRIVSGAYDGKIKVWDLVAALDPRAPAGT  375 (435)
T ss_dssp             CEEEEEEE--TTEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEECCSSEEEEEETTSCEEEEEHHHHTSTTSCTTT
T ss_pred             cEEEEEeC--CCEEEEEeCCCeEEEEECCCCCEEEEEeCCcCcEEEEEecCCEEEEEeCCCcEEEEECCCCCCccccccc
Confidence            99999984  68999999999999999986                  578899999999999999998766        


Q ss_pred             -eeeEEeccCCceeEEEEEEecCCCeeEEccccceEEEEEcCCCCeEEEeeecCCCcEEEEeecc
Q 042146          198 -ILKTYSGYTNSKYCISSTFSVTNGKYIVSHRDPVISVASHPAKNIIASGALDNDRTMKIWTQEK  261 (262)
Q Consensus       198 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~d~d~~i~iw~~~~  261 (262)
                       ++..+.+                      |...|.+++|  ++.+|++++  .||.|++|++.+
T Consensus       376 ~~~~~~~~----------------------h~~~v~~l~~--~~~~l~s~s--~Dg~i~iwd~~~  414 (435)
T 1p22_A          376 LCLRTLVE----------------------HSGRVFRLQF--DEFQIVSSS--HDDTILIWDFLN  414 (435)
T ss_dssp             TEEEEECC----------------------CSSCCCCEEE--CSSCEEECC--SSSEEEEEC---
T ss_pred             hheeeccC----------------------CCCCeEEEEe--CCCEEEEEe--CCCEEEEEECCC
Confidence             5666655                      8889999999  688899999  899999999864

>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C

Probab=100.00  E-value=9.3e-34  Score=223.96  Aligned_cols=213  Identities=14%  Similarity=0.211  Sum_probs=176.0

Q ss_pred             ecccCcCceEEEEEccCCCeEEEecCCCeEEEeecCCCCCCCCCCCCCCccccCCcccccc---------------ceeE
Q 042146           18 TLNGHLRAVSYVKFSHDGRLLTSSSAEKTLLTYSLSSISNFDSTPPSPLQKFTGHEQGISD---------------LATI   82 (262)
Q Consensus        18 ~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~---------------~~~i   82 (262)
                      .+..|.++|++++|+|++++|++++.|+.|++||++...      ......+.+|...+..               .+.|
T Consensus         3 ~~~~~~~~i~~~~~s~~~~~l~~~~~d~~v~i~~~~~~~------~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~dg~i   76 (372)
T 1k8k_C            3 YHSFLVEPISCHAWNKDRTQIAICPNNHEVHIYEKSGNK------WVQVHELKEHNGQVTGVDWAPDSNRIVTCGTDRNA   76 (372)
T ss_dssp             EEESCSSCCCEEEECTTSSEEEEECSSSEEEEEEEETTE------EEEEEEEECCSSCEEEEEEETTTTEEEEEETTSCE
T ss_pred             eecccCCCeEEEEECCCCCEEEEEeCCCEEEEEeCCCCc------EEeeeeecCCCCcccEEEEeCCCCEEEEEcCCCeE
Confidence            345699999999999999999999999999999987642      0012222233322222               2389


Q ss_pred             EEEecCCCccce--ecccCCcceEEEEEeCCCCEEEeecCCCeEEEEECCCCee----eeeeecCCCCeeeEEEccCCCE
Q 042146           83 RLWDVPTATSLK--TLIGHTNYVFCINFNPQSNRIVSDTFNETIRIWDIKTGKC----LKVLPAHSDPVTAIDFNRDGTM  156 (262)
Q Consensus        83 ~v~d~~~~~~~~--~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~----~~~~~~~~~~v~~~~~~~~~~~  156 (262)
                      ++||+++++...  .+..|...|.+++|+|+++++++++.||.|++||++.++.    ......|...|.+++|+|++++
T Consensus        77 ~vwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~  156 (372)
T 1k8k_C           77 YVWTLKGRTWKPTLVILRINRAARCVRWAPNEKKFAVGSGSRVISICYFEQENDWWVCKHIKKPIRSTVLSLDWHPNSVL  156 (372)
T ss_dssp             EEEEEETTEEEEEEECCCCSSCEEEEEECTTSSEEEEEETTSSEEEEEEETTTTEEEEEEECTTCCSCEEEEEECTTSSE
T ss_pred             EEEECCCCeeeeeEEeecCCCceeEEEECCCCCEEEEEeCCCEEEEEEecCCCcceeeeeeecccCCCeeEEEEcCCCCE
Confidence            999998876443  3467889999999999999999999999999999987762    2333568899999999999999


Q ss_pred             EEEEeCCCeEEEEeCC------------------C--------------------CCccEEEEEcCCCeEEEEecCCCce
Q 042146          157 IVTSSYDGLYRILDAS------------------T--------------------PNGKFILVGTLDNTLRLWNYSTRKI  198 (262)
Q Consensus       157 l~~~~~dg~i~~~d~~------------------~--------------------~~~~~l~~~~~dg~i~i~d~~~~~~  198 (262)
                      |++++.||.|++||++                  .                    +++++|++++.||.|++||++++++
T Consensus       157 l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~  236 (372)
T 1k8k_C          157 LAAGSCDFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCGWVHGVCFSANGSRVAWVSHDSTVCLADADKKMA  236 (372)
T ss_dssp             EEEEETTSCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECCCCSSCEEEEEECSSSSEEEEEETTTEEEEEEGGGTTE
T ss_pred             EEEEcCCCCEEEEEcccccccccccccccccccchhhheEecCCCCCeEEEEEECCCCCEEEEEeCCCEEEEEECCCCce
Confidence            9999999999999953                  1                    7889999999999999999999999


Q ss_pred             eeEEeccCCceeEEEEEEecCCCeeEEccccceEEEEEcCCCCeEEEeeecCCCcEEEEeecc
Q 042146          199 LKTYSGYTNSKYCISSTFSVTNGKYIVSHRDPVISVASHPAKNIIASGALDNDRTMKIWTQEK  261 (262)
Q Consensus       199 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~d~d~~i~iw~~~~  261 (262)
                      +..+..                      |..+|.+++|+|++.+|+++   .|+.|++|++..
T Consensus       237 ~~~~~~----------------------~~~~v~~~~~~~~~~~l~~~---~d~~i~i~~~~~  274 (372)
T 1k8k_C          237 VATLAS----------------------ETLPLLAVTFITESSLVAAG---HDCFPVLFTYDS  274 (372)
T ss_dssp             EEEEEC----------------------SSCCEEEEEEEETTEEEEEE---TTSSCEEEEEET
T ss_pred             eEEEcc----------------------CCCCeEEEEEecCCCEEEEE---eCCeEEEEEccC
Confidence            988886                      88899999999999988876   589999999865

>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}

Probab=100.00  E-value=3.1e-33  Score=220.45  Aligned_cols=187  Identities=21%  Similarity=0.396  Sum_probs=170.1

Q ss_pred             cceecccCcCceEEEEEccCCCeEEEecCCCeEEEeecCCCCCCCCCCCCCCccccCCccccccceeEEEEecCCCccce
Q 042146           15 LTQTLNGHLRAVSYVKFSHDGRLLTSSSAEKTLLTYSLSSISNFDSTPPSPLQKFTGHEQGISDLATIRLWDVPTATSLK   94 (262)
Q Consensus        15 ~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~i~v~d~~~~~~~~   94 (262)
                      ....+.+|.++|++++|+|++++|++++.||.|++||+                                   .+++.+.
T Consensus        24 ~~~~l~~h~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~-----------------------------------~~~~~~~   68 (369)
T 3zwl_B           24 KAIKLTGHERPLTQVKYNKEGDLLFSCSKDSSASVWYS-----------------------------------LNGERLG   68 (369)
T ss_dssp             EEEEEECCSSCEEEEEECTTSCEEEEEESSSCEEEEET-----------------------------------TTCCEEE
T ss_pred             ccEEEEEeeceEEEEEEcCCCCEEEEEeCCCEEEEEeC-----------------------------------CCchhhh
Confidence            45568899999999999999999999999999888854                                   4567777


Q ss_pred             ecccCCcceEEEEEeCCCCEEEeecCCCeEEEEECCCCeeeeeeecCCCCeeeEEEccCCCEEEEEeCC-----CeEEEE
Q 042146           95 TLIGHTNYVFCINFNPQSNRIVSDTFNETIRIWDIKTGKCLKVLPAHSDPVTAIDFNRDGTMIVTSSYD-----GLYRIL  169 (262)
Q Consensus        95 ~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d-----g~i~~~  169 (262)
                      .+.+|...|.+++|+|++++|++++.||.|++||+++++.+..+. +..++.+++|+|+++++++++.+     +.|++|
T Consensus        69 ~~~~h~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~~~~~~~~~g~i~~~  147 (369)
T 3zwl_B           69 TLDGHTGTIWSIDVDCFTKYCVTGSADYSIKLWDVSNGQCVATWK-SPVPVKRVEFSPCGNYFLAILDNVMKNPGSINIY  147 (369)
T ss_dssp             EECCCSSCEEEEEECTTSSEEEEEETTTEEEEEETTTCCEEEEEE-CSSCEEEEEECTTSSEEEEEECCBTTBCCEEEEE
T ss_pred             hhhhcCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEee-cCCCeEEEEEccCCCEEEEecCCccCCCCEEEEE
Confidence            888899999999999999999999999999999999999988887 88999999999999999999999     999999


Q ss_pred             eCCC---------------------------------CCccEEEEEcCCCeEEEEecCC-CceeeEEeccCCceeEEEEE
Q 042146          170 DAST---------------------------------PNGKFILVGTLDNTLRLWNYST-RKILKTYSGYTNSKYCISST  215 (262)
Q Consensus       170 d~~~---------------------------------~~~~~l~~~~~dg~i~i~d~~~-~~~~~~~~~~~~~~~~~~~~  215 (262)
                      |+..                                 +++++|++++.||.|++||+++ ++.+..+..           
T Consensus       148 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~-----------  216 (369)
T 3zwl_B          148 EIERDSATHELTKVSEEPIHKIITHEGLDAATVAGWSTKGKYIIAGHKDGKISKYDVSNNYEYVDSIDL-----------  216 (369)
T ss_dssp             EEEECTTTCCEEEECSSCSEEEECCTTCCCEEEEEECGGGCEEEEEETTSEEEEEETTTTTEEEEEEEC-----------
T ss_pred             EecCCccceeecccccceeeeccCCcCccceeEEEEcCCCCEEEEEcCCCEEEEEECCCCcEeEEEEec-----------
Confidence            9754                                 4678999999999999999998 677777776           


Q ss_pred             EecCCCeeEEccccceEEEEEcCCCCeEEEeeecCCCcEEEEeecc
Q 042146          216 FSVTNGKYIVSHRDPVISVASHPAKNIIASGALDNDRTMKIWTQEK  261 (262)
Q Consensus       216 ~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~d~d~~i~iw~~~~  261 (262)
                                 |...|.+++|+|++.+|++++  .|+.|++||+..
T Consensus       217 -----------~~~~v~~~~~~~~~~~l~~~~--~d~~i~v~d~~~  249 (369)
T 3zwl_B          217 -----------HEKSISDMQFSPDLTYFITSS--RDTNSFLVDVST  249 (369)
T ss_dssp             -----------CSSCEEEEEECTTSSEEEEEE--TTSEEEEEETTT
T ss_pred             -----------CCCceeEEEECCCCCEEEEec--CCceEEEEECCC
Confidence                       888999999999999999999  899999999864

>4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A

Probab=100.00  E-value=8.5e-34  Score=226.20  Aligned_cols=198  Identities=13%  Similarity=0.172  Sum_probs=161.4

Q ss_pred             CCCCceeeeccc-------ccceecccCcCceEEEEEcc--------CCCeEEEecCCCeEEEeecCCCCCCCCCCCCCC
Q 042146            2 SSDRSLESFRPY-------TLTQTLNGHLRAVSYVKFSH--------DGRLLTSSSAEKTLLTYSLSSISNFDSTPPSPL   66 (262)
Q Consensus         2 s~d~~i~~~~~~-------~~~~~~~~h~~~v~~~~~~~--------~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~   66 (262)
                      +.|++++.|+..       .+...+.+|.+.|++++|+|        ++++||+|+.|++|+|||+              
T Consensus       108 ~~d~~v~lw~~~~~~~~~~~~~~~~~gH~~~v~~v~~~p~~~~~~~~d~~~las~s~D~tv~~Wd~--------------  173 (393)
T 4gq1_A          108 CQDNTVRLIITKNETIITQHVLGGKSGHHNFVNDIDIADVYSADNRLAEQVIASVGDDCTLIIWRL--------------  173 (393)
T ss_dssp             ETTSCEEEEEEETTEEEEEEEECTTTSCSSCEEEEEEEEEECTTCSEEEEEEEEEETTSEEEEEEE--------------
T ss_pred             eCCCcEEEEECCCCccceeeeecccCCCCCceEEEEEccccccccCCCCCEEEEEECCCeEEEEEC--------------
Confidence            468999998632       24556889999999999998        7899999999999988854              


Q ss_pred             ccccCCccccccceeEEEEecCCCccceecccCCcceEEEEEeCCC-CEEEeecCCCeEEEEECCCCeeeee--------
Q 042146           67 QKFTGHEQGISDLATIRLWDVPTATSLKTLIGHTNYVFCINFNPQS-NRIVSDTFNETIRIWDIKTGKCLKV--------  137 (262)
Q Consensus        67 ~~~~~~~~~v~~~~~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~dg~i~vwd~~~~~~~~~--------  137 (262)
                                           .++.++..+..|...+.+++|+|++ .+|++|+.||+|++||+++++....        
T Consensus       174 ---------------------~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~d~~v~~wd~~t~~~~~~~~~~~~~~  232 (393)
T 4gq1_A          174 ---------------------TDEGPILAGYPLSSPGISVQFRPSNPNQLIVGERNGNIRIFDWTLNLSAEENSQTELVK  232 (393)
T ss_dssp             ---------------------ETTEEEEEEEECSSCEEEEEEETTEEEEEEEEETTSEEEEEETTCCC----------CS
T ss_pred             ---------------------CCCceeeeecCCCCCcEEEEECCCCCceEEecCCCCEEEEEECCCCcccccccccCCcc
Confidence                                 4555666677788999999999977 4799999999999999987754322        


Q ss_pred             -----------------eecCCCCeeeEEEc-cCCCEEEEEeCCCeEEEEeCCC--------------------------
Q 042146          138 -----------------LPAHSDPVTAIDFN-RDGTMIVTSSYDGLYRILDAST--------------------------  173 (262)
Q Consensus       138 -----------------~~~~~~~v~~~~~~-~~~~~l~~~~~dg~i~~~d~~~--------------------------  173 (262)
                                       ..+|...+.++.|+ |+++.+++++.|+++++||+..                          
T Consensus       233 ~~~~~s~~~~~~~~~~~~~~~~~~v~~v~~~~~dg~~l~s~s~d~~i~vwd~~~~~~~~~l~~~~~~~~~~~~~~~~~~~  312 (393)
T 4gq1_A          233 NPWLLTLNTLPLVNTCHSSGIASSLANVRWIGSDGSGILAMCKSGAWLRWNLFANNDYNEISDSTMKLGPKNLLPNVQGI  312 (393)
T ss_dssp             CCCSEEEESGGGC------CCSSSCSEEEEETTTTCEEEEECTTSEEEEEEC-------------------CCSCSEEEE
T ss_pred             cceEEecccccceeeeecccccccceeeeeecCCCCEEEEEeCCCCEEEEECccCCCCceEeeecCccccEEEccccccc
Confidence                             13577788999987 6999999999999999999864                          


Q ss_pred             --------------CCccEEEEEcCCCeEEEEecCCCceeeEEeccCCceeEEEEEEecCCCeeEEccccceEEEEEcCC
Q 042146          174 --------------PNGKFILVGTLDNTLRLWNYSTRKILKTYSGYTNSKYCISSTFSVTNGKYIVSHRDPVISVASHPA  239 (262)
Q Consensus       174 --------------~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~  239 (262)
                                    .++.++++|+.||.|++||+.++++...+..                      |..+|.+++|+|+
T Consensus       313 ~~~~~~~~~~~~~~~~~~~~~sgs~Dg~V~lwd~~~~~~~~~~~~----------------------~~~~V~svafspd  370 (393)
T 4gq1_A          313 SLFPSLLGACPHPRYMDYFATAHSQHGLIQLINTYEKDSNSIPIQ----------------------LGMPIVDFCWHQD  370 (393)
T ss_dssp             CSSCCSSCCEECSSCTTEEEEEETTTTEEEEEETTCTTCCEEEEE----------------------CSSCEEEEEECTT
T ss_pred             cccCcceeEEEccCCCCEEEEEECCCCEEEEEECCCCcEEEEecC----------------------CCCcEEEEEEcCC
Confidence                          2455788899999999999999988877766                      8889999999999


Q ss_pred             CCeEEEeeecCCCcEEEEee
Q 042146          240 KNIIASGALDNDRTMKIWTQ  259 (262)
Q Consensus       240 ~~~l~~~~~d~d~~i~iw~~  259 (262)
                      |++||+++  ++ .+.+|++
T Consensus       371 G~~LA~as--~~-Gv~lvrL  387 (393)
T 4gq1_A          371 GSHLAIAT--EG-SVLLTRL  387 (393)
T ss_dssp             SSEEEEEE--SS-EEEEEEE
T ss_pred             CCEEEEEe--CC-CeEEEEE
Confidence            99999998  55 4666665

>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}

Probab=100.00  E-value=2.8e-33  Score=216.12  Aligned_cols=214  Identities=25%  Similarity=0.358  Sum_probs=178.5

Q ss_pred             eecccccceecccCcCceEEEEEccCCCeEEEecCCCeEEEeecCCCCCCCCCCCCCCccccCCcccccc----------
Q 042146            9 SFRPYTLTQTLNGHLRAVSYVKFSHDGRLLTSSSAEKTLLTYSLSSISNFDSTPPSPLQKFTGHEQGISD----------   78 (262)
Q Consensus         9 ~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~----------   78 (262)
                      .+.++++.+.+.+|.++|++++| |++++|++++.||.|++||+......        ..+..|...+..          
T Consensus         4 ~~~~~~~~~~l~~h~~~v~~~~~-~~~~~l~s~~~dg~v~vw~~~~~~~~--------~~~~~~~~~v~~~~~~~~~~~l   74 (313)
T 3odt_A            4 PFTGYQLSATLKGHDQDVRDVVA-VDDSKVASVSRDGTVRLWSKDDQWLG--------TVVYTGQGFLNSVCYDSEKELL   74 (313)
T ss_dssp             -CCCCEEEEEECCCSSCEEEEEE-EETTEEEEEETTSEEEEEEESSSEEE--------EEEEECSSCEEEEEEETTTTEE
T ss_pred             ccccHHHHHHhhCCCCCcEEEEe-cCCCEEEEEEcCCcEEEEECCCCEEE--------EEeecCCccEEEEEECCCCCEE
Confidence            34567888999999999999999 99999999999999999998653221        111222222211          


Q ss_pred             -----ceeEEEEecCCC---ccceecccCCcceEEEEEeCCCCEEEeecCCCeEEEEECCCCeeeeeeecCCCCeeeEEE
Q 042146           79 -----LATIRLWDVPTA---TSLKTLIGHTNYVFCINFNPQSNRIVSDTFNETIRIWDIKTGKCLKVLPAHSDPVTAIDF  150 (262)
Q Consensus        79 -----~~~i~v~d~~~~---~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~  150 (262)
                           .+.+++|++...   +.+..+..|...|.+++|  +++++++++.||.|++||  .++.+..+..|..++.+++|
T Consensus        75 ~~~~~dg~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~--~~~~l~~~~~d~~i~~~d--~~~~~~~~~~~~~~v~~~~~  150 (313)
T 3odt_A           75 LFGGKDTMINGVPLFATSGEDPLYTLIGHQGNVCSLSF--QDGVVISGSWDKTAKVWK--EGSLVYNLQAHNASVWDAKV  150 (313)
T ss_dssp             EEEETTSCEEEEETTCCTTSCC-CEECCCSSCEEEEEE--ETTEEEEEETTSEEEEEE--TTEEEEEEECCSSCEEEEEE
T ss_pred             EEecCCCeEEEEEeeecCCCCcccchhhcccCEEEEEe--cCCEEEEEeCCCCEEEEc--CCcEEEecccCCCceeEEEE
Confidence                 227899998664   556778889999999999  578999999999999999  67778888899999999999


Q ss_pred             cc-CCCEEEEEeCCCeEEEEeCCC-------------------CCccEEEEEcCCCeEEEEecCCCceeeEEeccCCcee
Q 042146          151 NR-DGTMIVTSSYDGLYRILDAST-------------------PNGKFILVGTLDNTLRLWNYSTRKILKTYSGYTNSKY  210 (262)
Q Consensus       151 ~~-~~~~l~~~~~dg~i~~~d~~~-------------------~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~  210 (262)
                      +| +++.+++++.||.|++||...                   +++. +++++.||.|++||+++++++..+..      
T Consensus       151 ~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~i~~~~~~~~~~-~~~~~~dg~i~i~d~~~~~~~~~~~~------  223 (313)
T 3odt_A          151 VSFSENKFLTASADKTIKLWQNDKVIKTFSGIHNDVVRHLAVVDDGH-FISCSNDGLIKLVDMHTGDVLRTYEG------  223 (313)
T ss_dssp             EETTTTEEEEEETTSCEEEEETTEEEEEECSSCSSCEEEEEEEETTE-EEEEETTSEEEEEETTTCCEEEEEEC------
T ss_pred             ccCCCCEEEEEECCCCEEEEecCceEEEEeccCcccEEEEEEcCCCe-EEEccCCCeEEEEECCchhhhhhhhc------
Confidence            99 899999999999999999654                   5566 99999999999999999999988887      


Q ss_pred             EEEEEEecCCCeeEEccccceEEEEEcCCCCeEEEeeecCCCcEEEEeecc
Q 042146          211 CISSTFSVTNGKYIVSHRDPVISVASHPAKNIIASGALDNDRTMKIWTQEK  261 (262)
Q Consensus       211 ~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~d~d~~i~iw~~~~  261 (262)
                                      |...|.+++|+|++ .|++++  .||.|++|++.+
T Consensus       224 ----------------~~~~i~~~~~~~~~-~l~~~~--~dg~v~iwd~~~  255 (313)
T 3odt_A          224 ----------------HESFVYCIKLLPNG-DIVSCG--EDRTVRIWSKEN  255 (313)
T ss_dssp             ----------------CSSCEEEEEECTTS-CEEEEE--TTSEEEEECTTT
T ss_pred             ----------------CCceEEEEEEecCC-CEEEEe--cCCEEEEEECCC
Confidence                            88899999999999 588888  899999999864

>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}

Probab=100.00  E-value=2.4e-33  Score=225.10  Aligned_cols=214  Identities=16%  Similarity=0.253  Sum_probs=173.5

Q ss_pred             CcCceEEEEEccCCCeEEEecCCCeEEEeecCCCCCCCCC-CCCCCcccc--CCcccc---ccceeEEEEecCCCcccee
Q 042146           22 HLRAVSYVKFSHDGRLLTSSSAEKTLLTYSLSSISNFDST-PPSPLQKFT--GHEQGI---SDLATIRLWDVPTATSLKT   95 (262)
Q Consensus        22 h~~~v~~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~-~~~~~~~~~--~~~~~v---~~~~~i~v~d~~~~~~~~~   95 (262)
                      |.+.|++++|+|++++|++++.||.|++||.......... ....+..+.  .....+   ...+.|++||+.+++.+..
T Consensus       107 ~~~~v~~~~~s~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~  186 (425)
T 1r5m_A          107 TTNQVTCLAWSHDGNSIVTGVENGELRLWNKTGALLNVLNFHRAPIVSVKWNKDGTHIISMDVENVTILWNVISGTVMQH  186 (425)
T ss_dssp             -CBCEEEEEECTTSSEEEEEETTSCEEEEETTSCEEEEECCCCSCEEEEEECTTSSEEEEEETTCCEEEEETTTTEEEEE
T ss_pred             CCCceEEEEEcCCCCEEEEEeCCCeEEEEeCCCCeeeeccCCCccEEEEEECCCCCEEEEEecCCeEEEEECCCCcEEEE
Confidence            6889999999999999999999999999984332111000 011111111  111111   1123899999999998888


Q ss_pred             cccCCcc---------------eEEEEEeCCCCEEEeecCCCeEEEEECCCCeeeeeeecCCCCeeeEEEccCCCEEEEE
Q 042146           96 LIGHTNY---------------VFCINFNPQSNRIVSDTFNETIRIWDIKTGKCLKVLPAHSDPVTAIDFNRDGTMIVTS  160 (262)
Q Consensus        96 ~~~~~~~---------------v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~  160 (262)
                      +..+...               +.+++|+|++ .+++++.+|.|++||+++++.+..+..|..+|.+++|+|++++|+++
T Consensus       187 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~  265 (425)
T 1r5m_A          187 FELKETGGSSINAENHSGDGSLGVDVEWVDDD-KFVIPGPKGAIFVYQITEKTPTGKLIGHHGPISVLEFNDTNKLLLSA  265 (425)
T ss_dssp             ECCC---------------CCCBSCCEEEETT-EEEEECGGGCEEEEETTCSSCSEEECCCSSCEEEEEEETTTTEEEEE
T ss_pred             eeccccCccceeeccccCCcceeeEEEEcCCC-EEEEEcCCCeEEEEEcCCCceeeeeccCCCceEEEEECCCCCEEEEE
Confidence            8877766               9999999874 58888899999999999999998998999999999999999999999


Q ss_pred             eCCCeEEEEeCCC--------------------CCccEEEEEcCCCeEEEEecCCCceeeEEeccCCceeEEEEEEecCC
Q 042146          161 SYDGLYRILDAST--------------------PNGKFILVGTLDNTLRLWNYSTRKILKTYSGYTNSKYCISSTFSVTN  220 (262)
Q Consensus       161 ~~dg~i~~~d~~~--------------------~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~  220 (262)
                      +.|+.|++||++.                    +++ ++++++.||.|++||+++++++..+..                
T Consensus       266 ~~d~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~-~l~~~~~d~~i~i~d~~~~~~~~~~~~----------------  328 (425)
T 1r5m_A          266 SDDGTLRIWHGGNGNSQNCFYGHSQSIVSASWVGDD-KVISCSMDGSVRLWSLKQNTLLALSIV----------------  328 (425)
T ss_dssp             ETTSCEEEECSSSBSCSEEECCCSSCEEEEEEETTT-EEEEEETTSEEEEEETTTTEEEEEEEC----------------
T ss_pred             cCCCEEEEEECCCCccceEecCCCccEEEEEECCCC-EEEEEeCCCcEEEEECCCCcEeEeccc----------------
Confidence            9999999999876                    666 999999999999999999998888876                


Q ss_pred             CeeEEccccceEEEEEcCCCCeEEEeeecCCCcEEEEeecc
Q 042146          221 GKYIVSHRDPVISVASHPAKNIIASGALDNDRTMKIWTQEK  261 (262)
Q Consensus       221 ~~~~~~~~~~v~~~~~~p~~~~l~~~~~d~d~~i~iw~~~~  261 (262)
                            |...|.+++|+|++++|++++  .||.|++|++..
T Consensus       329 ------~~~~i~~~~~s~~~~~l~~~~--~dg~i~i~~~~~  361 (425)
T 1r5m_A          329 ------DGVPIFAGRISQDGQKYAVAF--MDGQVNVYDLKK  361 (425)
T ss_dssp             ------TTCCEEEEEECTTSSEEEEEE--TTSCEEEEECHH
T ss_pred             ------CCccEEEEEEcCCCCEEEEEE--CCCeEEEEECCC
Confidence                  888999999999999999999  899999999863

>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}

Probab=100.00  E-value=9e-35  Score=230.46  Aligned_cols=198  Identities=15%  Similarity=0.184  Sum_probs=154.5

Q ss_pred             ecccCcCceEEEEEccCCCeEEEecCCCeEEEeecCCCCCCCCCCCCCCccccCCccccccceeEEEEecCCC--cccee
Q 042146           18 TLNGHLRAVSYVKFSHDGRLLTSSSAEKTLLTYSLSSISNFDSTPPSPLQKFTGHEQGISDLATIRLWDVPTA--TSLKT   95 (262)
Q Consensus        18 ~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~i~v~d~~~~--~~~~~   95 (262)
                      .++.|.++|++++|+|++++|++|+.|+.|++||+.                                   ++  +.+..
T Consensus         6 ~~~~~~~~v~~~~~s~~g~~l~~~~~d~~i~iw~~~-----------------------------------~~~~~~~~~   50 (377)
T 3dwl_C            6 VLHILPKPSYEHAFNSQRTEFVTTTATNQVELYEQD-----------------------------------GNGWKHART   50 (377)
T ss_dssp             EEEECSSCCSCCEECSSSSEEECCCSSSCBCEEEEE-----------------------------------TTEEEECCC
T ss_pred             eEecCCCcEEEEEECCCCCEEEEecCCCEEEEEEcc-----------------------------------CCceEEEEE
Confidence            445577899999999999999999999998888653                                   34  56667


Q ss_pred             cccCCcceEEEEEeCCCCEEEeecCCCeEEEEECCCCe---eeeeeecCCCCeeeEEEccCCCEEEEEeCCCeEEEEeCC
Q 042146           96 LIGHTNYVFCINFNPQSNRIVSDTFNETIRIWDIKTGK---CLKVLPAHSDPVTAIDFNRDGTMIVTSSYDGLYRILDAS  172 (262)
Q Consensus        96 ~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~---~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~d~~  172 (262)
                      +.+|...|.+++|+|++++|++++.|+.|++||+++++   ....+..|...|.+++|+|++++|++++.|+.|++||++
T Consensus        51 ~~~h~~~v~~~~~s~~~~~l~s~s~d~~v~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~  130 (377)
T 3dwl_C           51 FSDHDKIVTCVDWAPKSNRIVTCSQDRNAYVYEKRPDGTWKQTLVLLRLNRAATFVRWSPNEDKFAVGSGARVISVCYFE  130 (377)
T ss_dssp             BCCCSSCEEEEEECTTTCCEEEEETTSSEEEC------CCCCEEECCCCSSCEEEEECCTTSSCCEEEESSSCEEECCC-
T ss_pred             EecCCceEEEEEEeCCCCEEEEEeCCCeEEEEEcCCCCceeeeeEecccCCceEEEEECCCCCEEEEEecCCeEEEEEEC
Confidence            88899999999999999999999999999999999877   666777899999999999999999999999999999976


Q ss_pred             C------------------------CCccEEEEEcCCCeEEEEecCCCceeeEEeccCC----ceeEEEEEEecCCCeeE
Q 042146          173 T------------------------PNGKFILVGTLDNTLRLWNYSTRKILKTYSGYTN----SKYCISSTFSVTNGKYI  224 (262)
Q Consensus       173 ~------------------------~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~  224 (262)
                      .                        |++++|++++.|+.|++||++.++..........    ........        +
T Consensus       131 ~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~  202 (377)
T 3dwl_C          131 QENDWWVSKHLKRPLRSTILSLDWHPNNVLLAAGCADRKAYVLSAYVRDVDAKPEASVWGSRLPFNTVCAE--------Y  202 (377)
T ss_dssp             ----CCCCEEECSSCCSCEEEEEECTTSSEEEEEESSSCEEEEEECCSSCC-CCCSCSSCSCCCEEEEEEC--------C
T ss_pred             CcccceeeeEeecccCCCeEEEEEcCCCCEEEEEeCCCEEEEEEEEecccCCCccccccccccchhhhhhc--------c
Confidence            4                        7889999999999999999964332111100000    00000000        0


Q ss_pred             EccccceEEEEEcCCCCeEEEeeecCCCcEEEEeecc
Q 042146          225 VSHRDPVISVASHPAKNIIASGALDNDRTMKIWTQEK  261 (262)
Q Consensus       225 ~~~~~~v~~~~~~p~~~~l~~~~~d~d~~i~iw~~~~  261 (262)
                       +|...|.+++|+|++++|++++  .||.|++|++..
T Consensus       203 -~~~~~v~~~~~sp~~~~l~~~~--~d~~i~iwd~~~  236 (377)
T 3dwl_C          203 -PSGGWVHAVGFSPSGNALAYAG--HDSSVTIAYPSA  236 (377)
T ss_dssp             -CCSSSEEEEEECTTSSCEEEEE--TTTEEC-CEECS
T ss_pred             -cCCceEEEEEECCCCCEEEEEe--CCCcEEEEECCC
Confidence             2899999999999999999999  899999999864

>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B

Probab=100.00  E-value=6.5e-33  Score=223.64  Aligned_cols=221  Identities=20%  Similarity=0.365  Sum_probs=176.1

Q ss_pred             eecccCcCceEEEEEccC-CCeEEEecCCCeEEEeecCCCCCCCC--CCCCCCccccCCccccccc--------------
Q 042146           17 QTLNGHLRAVSYVKFSHD-GRLLTSSSAEKTLLTYSLSSISNFDS--TPPSPLQKFTGHEQGISDL--------------   79 (262)
Q Consensus        17 ~~~~~h~~~v~~~~~~~~-~~~l~s~~~d~~i~iw~~~~~~~~~~--~~~~~~~~~~~~~~~v~~~--------------   79 (262)
                      .....|.+.|++++|+|+ +.+|++++.||.|++|++........  ........+.+|...+..+              
T Consensus       122 ~~~~~h~~~v~~l~~~p~~~~~lat~~~dg~V~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~  201 (430)
T 2xyi_A          122 EIKINHEGEVNRARYMPQNACVIATKTPSSDVLVFDYTKHPSKPEPSGECQPDLRLRGHQKEGYGLSWNPNLNGYLLSAS  201 (430)
T ss_dssp             EEEEEESSCCSEEEEETTEEEEEEEECSSSCEEEEEGGGSCSSCCTTCCCCCSEEEECCSSCCCCEEECTTSTTEEEEEC
T ss_pred             EEEEcCCCcEEEEEECCCCCcEEEEECCCCcEEEEECCCcccccCccccCCCcEEecCCCCCeEEEEeCCCCCCeEEEEe
Confidence            445579999999999997 78999999999999999975321111  1123333344444333322              


Q ss_pred             --eeEEEEecCCCcc-------ceecccCCcceEEEEEeC-CCCEEEeecCCCeEEEEECCCC---eeeeeeecCCCCee
Q 042146           80 --ATIRLWDVPTATS-------LKTLIGHTNYVFCINFNP-QSNRIVSDTFNETIRIWDIKTG---KCLKVLPAHSDPVT  146 (262)
Q Consensus        80 --~~i~v~d~~~~~~-------~~~~~~~~~~v~~~~~~~-~~~~l~~~~~dg~i~vwd~~~~---~~~~~~~~~~~~v~  146 (262)
                        +.|++|++..+..       ...+..|...|.+++|+| ++.+|++++.||.|++||++++   +.+..+..|...|+
T Consensus       202 ~dg~i~vwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~l~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~  281 (430)
T 2xyi_A          202 DDHTICLWDINATPKEHRVIDAKNIFTGHTAVVEDVAWHLLHESLFGSVADDQKLMIWDTRNNNTSKPSHTVDAHTAEVN  281 (430)
T ss_dssp             TTSCEEEEETTSCCBGGGEEECSEEECCCSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCSCSSSCSEEEECCSSCEE
T ss_pred             CCCeEEEEeCCCCCCCCceeccceeecCCCCCEeeeEEeCCCCCEEEEEeCCCeEEEEECCCCCCCcceeEeecCCCCeE
Confidence              2899999987432       345668999999999999 7889999999999999999977   56777888999999


Q ss_pred             eEEEccCCC-EEEEEeCCCeEEEEeCCC---------------------CCc-cEEEEEcCCCeEEEEecCCC-------
Q 042146          147 AIDFNRDGT-MIVTSSYDGLYRILDAST---------------------PNG-KFILVGTLDNTLRLWNYSTR-------  196 (262)
Q Consensus       147 ~~~~~~~~~-~l~~~~~dg~i~~~d~~~---------------------~~~-~~l~~~~~dg~i~i~d~~~~-------  196 (262)
                      +++|+|++. +|++|+.||.|++||++.                     |++ .+|++++.||.|++||+...       
T Consensus       282 ~i~~~p~~~~~l~tg~~dg~v~vwd~~~~~~~~~~~~~h~~~v~~i~~sp~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~  361 (430)
T 2xyi_A          282 CLSFNPYSEFILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTE  361 (430)
T ss_dssp             EEEECSSCTTEEEEEETTSEEEEEETTCTTSCSEEEECCSSCEEEEEECSSCTTEEEEEETTSCCEEEEGGGTTCCCCHH
T ss_pred             EEEeCCCCCCEEEEEeCCCeEEEEeCCCCCCCeEEeecCCCCEEEEEECCCCCCEEEEEeCCCcEEEEeCCCCccccCcc
Confidence            999999887 688999999999999986                     566 47999999999999999873       


Q ss_pred             -------ceeeEEeccCCceeEEEEEEecCCCeeEEccccceEEEEEcCCCC-eEEEeeecCCCcEEEEeecc
Q 042146          197 -------KILKTYSGYTNSKYCISSTFSVTNGKYIVSHRDPVISVASHPAKN-IIASGALDNDRTMKIWTQEK  261 (262)
Q Consensus       197 -------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~-~l~~~~~d~d~~i~iw~~~~  261 (262)
                             +++..+.+                      |...|++++|+|+++ +|++++  .||.|++|++.+
T Consensus       362 ~~~~~~~~~~~~~~~----------------------h~~~v~~~~~~p~~~~~l~s~s--~dg~i~iw~~~~  410 (430)
T 2xyi_A          362 DAEDGPPELLFIHGG----------------------HTAKISDFSWNPNEPWIICSVS--EDNIMQVWQMAE  410 (430)
T ss_dssp             HHHHCCTTEEEECCC----------------------CSSCEEEEEECSSSTTEEEEEE--TTSEEEEEEECH
T ss_pred             ccccCCcceEEEcCC----------------------CCCCceEEEECCCCCCEEEEEE--CCCCEEEeEccc
Confidence                   33333333                      888999999999999 889998  899999999864

>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}

Probab=100.00  E-value=9.3e-34  Score=222.70  Aligned_cols=228  Identities=12%  Similarity=0.232  Sum_probs=176.2

Q ss_pred             cceecccCcCceEEEEEccCCCeE-EEecC---CCeEEEeecCCCCCCCC---CCCCCCccccCCcc----c-c---ccc
Q 042146           15 LTQTLNGHLRAVSYVKFSHDGRLL-TSSSA---EKTLLTYSLSSISNFDS---TPPSPLQKFTGHEQ----G-I---SDL   79 (262)
Q Consensus        15 ~~~~~~~h~~~v~~~~~~~~~~~l-~s~~~---d~~i~iw~~~~~~~~~~---~~~~~~~~~~~~~~----~-v---~~~   79 (262)
                      ..+.+++|..+|.+++|+|+++.+ ++|+.   ||.|++||+........   .....+..+.....    . +   ...
T Consensus        10 ~~~~~~~h~~~v~~~~~~p~~~~l~~~~s~~~~d~~v~iw~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~d   89 (357)
T 3i2n_A           10 IAHIQKGFNYTVFDCKWVPCSAKFVTMGNFARGTGVIQLYEIQHGDLKLLREIEKAKPIKCGTFGATSLQQRYLATGDFG   89 (357)
T ss_dssp             EEEEEEECSSCEEEEEECTTSSEEEEEEC--CCCEEEEEEEECSSSEEEEEEEEESSCEEEEECTTCCTTTCCEEEEETT
T ss_pred             hhhhccCCCCceEEEEEcCCCceEEEecCccCCCcEEEEEeCCCCcccceeeecccCcEEEEEEcCCCCCCceEEEecCC
Confidence            445567899999999999998655 56665   99999999976432111   11111222211111    1 1   123


Q ss_pred             eeEEEEecCCCc-cceecccCCcceEEEEE------eCCCCEEEeecCCCeEEEEECCCCe-eeeeeecCCC----Ceee
Q 042146           80 ATIRLWDVPTAT-SLKTLIGHTNYVFCINF------NPQSNRIVSDTFNETIRIWDIKTGK-CLKVLPAHSD----PVTA  147 (262)
Q Consensus        80 ~~i~v~d~~~~~-~~~~~~~~~~~v~~~~~------~~~~~~l~~~~~dg~i~vwd~~~~~-~~~~~~~~~~----~v~~  147 (262)
                      +.|++||+.+++ .+..+.+|...|.+++|      +|++++|++++.||.|++||+++++ ++..+..|.+    .+.+
T Consensus        90 g~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~s~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~  169 (357)
T 3i2n_A           90 GNLHIWNLEAPEMPVYSVKGHKEIINAIDGIGGLGIGEGAPEIVTGSRDGTVKVWDPRQKDDPVANMEPVQGENKRDCWT  169 (357)
T ss_dssp             SCEEEECTTSCSSCSEEECCCSSCEEEEEEESGGGCC-CCCEEEEEETTSCEEEECTTSCSSCSEEECCCTTSCCCCEEE
T ss_pred             CeEEEEeCCCCCccEEEEEecccceEEEeeccccccCCCccEEEEEeCCCeEEEEeCCCCCCcceeccccCCCCCCceEE
Confidence            389999999988 88889999999999965      6789999999999999999999886 6777766554    8999


Q ss_pred             EE----EccCCCEEEEEeCCCeEEEEeCCC-------------------C---CccEEEEEcCCCeEEEEecCCCceeeE
Q 042146          148 ID----FNRDGTMIVTSSYDGLYRILDAST-------------------P---NGKFILVGTLDNTLRLWNYSTRKILKT  201 (262)
Q Consensus       148 ~~----~~~~~~~l~~~~~dg~i~~~d~~~-------------------~---~~~~l~~~~~dg~i~i~d~~~~~~~~~  201 (262)
                      ++    |+|++++|++++.||.|++||++.                   |   ++++|++++.||.|++||+++++.+..
T Consensus       170 ~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~  249 (357)
T 3i2n_A          170 VAFGNAYNQEERVVCAGYDNGDIKLFDLRNMALRWETNIKNGVCSLEFDRKDISMNKLVATSLEGKFHVFDMRTQHPTKG  249 (357)
T ss_dssp             EEEECCCC-CCCEEEEEETTSEEEEEETTTTEEEEEEECSSCEEEEEESCSSSSCCEEEEEESTTEEEEEEEEEEETTTE
T ss_pred             EEEEeccCCCCCEEEEEccCCeEEEEECccCceeeecCCCCceEEEEcCCCCCCCCEEEEECCCCeEEEEeCcCCCcccc
Confidence            98    788999999999999999999987                   5   899999999999999999998776655


Q ss_pred             EeccCCceeEEEEEEecCCCeeEEccccceEEEEEcCCCC-eEEEeeecCCCcEEEEeecc
Q 042146          202 YSGYTNSKYCISSTFSVTNGKYIVSHRDPVISVASHPAKN-IIASGALDNDRTMKIWTQEK  261 (262)
Q Consensus       202 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~-~l~~~~~d~d~~i~iw~~~~  261 (262)
                      +...                 ...+|...|.+++|+|+++ +|++++  .||.|++|+++.
T Consensus       250 ~~~~-----------------~~~~~~~~v~~~~~~~~~~~~l~~~~--~dg~i~iwd~~~  291 (357)
T 3i2n_A          250 FASV-----------------SEKAHKSTVWQVRHLPQNRELFLTAG--GAGGLHLWKYEY  291 (357)
T ss_dssp             EEEE-----------------EEECCSSCEEEEEEETTEEEEEEEEE--TTSEEEEEEEEC
T ss_pred             eeee-----------------ccCCCcCCEEEEEECCCCCcEEEEEe--CCCcEEEeecCC
Confidence            5410                 0112889999999999998 899999  899999999863

>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...

Probab=100.00  E-value=2.3e-32  Score=211.37  Aligned_cols=211  Identities=32%  Similarity=0.547  Sum_probs=176.2

Q ss_pred             CCCCceeeec--ccccceecccCcCceEEEEEccCCCeEEEecCCCeEEEeecCCCCCCCCCCCCCCccccCCccccc--
Q 042146            2 SSDRSLESFR--PYTLTQTLNGHLRAVSYVKFSHDGRLLTSSSAEKTLLTYSLSSISNFDSTPPSPLQKFTGHEQGIS--   77 (262)
Q Consensus         2 s~d~~i~~~~--~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~--   77 (262)
                      +.|+.+..|.  ..+....+.+|..+|.+++|+|++++|++++.|+.|++||++....        ...+.+|...+.  
T Consensus        42 ~~dg~i~iw~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~--------~~~~~~~~~~v~~~  113 (312)
T 4ery_A           42 SADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKC--------LKTLKGHSNYVFCC  113 (312)
T ss_dssp             ETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCE--------EEEEECCSSCEEEE
T ss_pred             eCCCeEEEEeCCCcccchhhccCCCceEEEEEcCCCCEEEEECCCCEEEEEECCCCcE--------EEEEcCCCCCEEEE
Confidence            3688888886  4567788899999999999999999999999999999999875432        222223322222  


Q ss_pred             -------------cceeEEEEecCCCccceecccCCcceEEEEEeCCCCEEEeecCCCeEEEEECCCCeeeeeee-cCCC
Q 042146           78 -------------DLATIRLWDVPTATSLKTLIGHTNYVFCINFNPQSNRIVSDTFNETIRIWDIKTGKCLKVLP-AHSD  143 (262)
Q Consensus        78 -------------~~~~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~-~~~~  143 (262)
                                   ..+.|++||+++++.+..+..|..+|.+++|+|+++++++++.||.|++||+++++.+..+. .+..
T Consensus       114 ~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~  193 (312)
T 4ery_A          114 NFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNP  193 (312)
T ss_dssp             EECSSSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEECCSSCC
T ss_pred             EEcCCCCEEEEEeCCCcEEEEECCCCEEEEEecCCCCcEEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeeEEeccCCC
Confidence                         22389999999999999999999999999999999999999999999999999988877664 4567


Q ss_pred             CeeeEEEccCCCEEEEEeCCCeEEEEeCCC-----------------------CCccEEEEEcCCCeEEEEecCCCceee
Q 042146          144 PVTAIDFNRDGTMIVTSSYDGLYRILDAST-----------------------PNGKFILVGTLDNTLRLWNYSTRKILK  200 (262)
Q Consensus       144 ~v~~~~~~~~~~~l~~~~~dg~i~~~d~~~-----------------------~~~~~l~~~~~dg~i~i~d~~~~~~~~  200 (262)
                      ++..++|+|++++|++++.|+.|++||++.                       +++.+|++|+.||.|++||+++++.+.
T Consensus       194 ~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sg~~dg~i~vwd~~~~~~~~  273 (312)
T 4ery_A          194 PVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQ  273 (312)
T ss_dssp             CEEEEEECTTSSEEEEEETTTEEEEEETTTTEEEEEECSSCCSSSCCCEEEECSSSCEEEECCTTSCEEEEETTTCCEEE
T ss_pred             ceEEEEECCCCCEEEEEcCCCeEEEEECCCCcEEEEEEecCCceEEEEEEEEeCCCcEEEEECCCCEEEEEECCCchhhh
Confidence            899999999999999999999999999876                       467889999999999999999999999


Q ss_pred             EEeccCCceeEEEEEEecCCCe
Q 042146          201 TYSGYTNSKYCISSTFSVTNGK  222 (262)
Q Consensus       201 ~~~~~~~~~~~~~~~~~~~~~~  222 (262)
                      .+.+|...+..+  .+.+....
T Consensus       274 ~~~~h~~~v~~~--~~~p~~~~  293 (312)
T 4ery_A          274 KLQGHTDVVIST--ACHPTENI  293 (312)
T ss_dssp             EECCCSSCEEEE--EECSSSSE
T ss_pred             hhhccCCcEEEE--eecCcCCc
Confidence            999988776655  44443333

>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*

Probab=100.00  E-value=9.5e-33  Score=224.66  Aligned_cols=230  Identities=22%  Similarity=0.399  Sum_probs=186.6

Q ss_pred             CCCCceeeec--ccccceecccCcCceEEEEEc--cCCCeEEEecCCCeEEEeecCCCCCCCCCCCC-------------
Q 042146            2 SSDRSLESFR--PYTLTQTLNGHLRAVSYVKFS--HDGRLLTSSSAEKTLLTYSLSSISNFDSTPPS-------------   64 (262)
Q Consensus         2 s~d~~i~~~~--~~~~~~~~~~h~~~v~~~~~~--~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~-------------   64 (262)
                      +.|+++..|+  ..+....+.+|.++|.+++|+  +++++|++|+.||+|++||+............             
T Consensus       180 s~dg~i~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~  259 (464)
T 3v7d_B          180 STDRTVRVWDIKKGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEEN  259 (464)
T ss_dssp             ETTSCEEEEETTTTEEEEEECCCSSCEEEEEEEESSSCEEEEEEETTSCEEEEECCCCCCC------CCSSEEESCGGGC
T ss_pred             eCCCCEEEEECCCCcEEEEECCCCCccEEEEEecCCCCCEEEEEcCCCcEEEeeCCCCcccccccccCCcceEeeccCCC
Confidence            4688888886  566788999999999999998  57889999999999999999765332111000             


Q ss_pred             --CCccccCCcccccc-------------ceeEEEEecCCCccceecccCCcceEEEEEeCCCCEEEeecCCCeEEEEEC
Q 042146           65 --PLQKFTGHEQGISD-------------LATIRLWDVPTATSLKTLIGHTNYVFCINFNPQSNRIVSDTFNETIRIWDI  129 (262)
Q Consensus        65 --~~~~~~~~~~~v~~-------------~~~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~  129 (262)
                        ....+.+|...+..             .+.|++||+.+++.+..+.+|...|.+++|+|+++++++|+.||.|++||+
T Consensus       260 ~~~~~~~~~~~~~v~~~~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~sg~~dg~i~vwd~  339 (464)
T 3v7d_B          260 PYFVGVLRGHMASVRTVSGHGNIVVSGSYDNTLIVWDVAQMKCLYILSGHTDRIYSTIYDHERKRCISASMDTTIRIWDL  339 (464)
T ss_dssp             TTEEEEECCCSSCEEEEEEETTEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEETTTTEEEEEETTSCEEEEET
T ss_pred             eEEEEEccCccceEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEecCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEEC
Confidence              11223334333322             228999999999999999999999999999999999999999999999999


Q ss_pred             CCCeeeeeeecCCCCeeeEEEccCCCEEEEEeCCCeEEEEeCCC-------------------CCccEEEEEcCCCeEEE
Q 042146          130 KTGKCLKVLPAHSDPVTAIDFNRDGTMIVTSSYDGLYRILDAST-------------------PNGKFILVGTLDNTLRL  190 (262)
Q Consensus       130 ~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~d~~~-------------------~~~~~l~~~~~dg~i~i  190 (262)
                      ++++++..+.+|...|.+++|+  +.+|++++.||.|++||++.                   ++++++++|+ ||.|++
T Consensus       340 ~~~~~~~~~~~h~~~v~~~~~~--~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-dg~i~i  416 (464)
T 3v7d_B          340 ENGELMYTLQGHTALVGLLRLS--DKFLVSAAADGSIRGWDANDYSRKFSYHHTNLSAITTFYVSDNILVSGS-ENQFNI  416 (464)
T ss_dssp             TTTEEEEEECCCSSCEEEEEEC--SSEEEEEETTSEEEEEETTTCCEEEEEECTTCCCEEEEEECSSEEEEEE-TTEEEE
T ss_pred             CCCcEEEEEeCCCCcEEEEEEc--CCEEEEEeCCCcEEEEECCCCceeeeecCCCCccEEEEEeCCCEEEEec-CCeEEE
Confidence            9999999999999999999997  57999999999999999987                   6788999988 899999


Q ss_pred             EecCCCceeeEE-eccCCceeEEEEEEecCCCeeEEccccceEEEEEcCCCCeEEEeeecCCCcEEEEee
Q 042146          191 WNYSTRKILKTY-SGYTNSKYCISSTFSVTNGKYIVSHRDPVISVASHPAKNIIASGALDNDRTMKIWTQ  259 (262)
Q Consensus       191 ~d~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~d~d~~i~iw~~  259 (262)
                      ||+++++++..+ ..                      |...|.+++|+ .+.++++++  .||.+.+|-+
T Consensus       417 wd~~~g~~~~~~~~~----------------------~~~~v~~v~~~-~~~l~~~~~--~~g~~~i~~l  461 (464)
T 3v7d_B          417 YNLRSGKLVHANILK----------------------DADQIWSVNFK-GKTLVAAVE--KDGQSFLEIL  461 (464)
T ss_dssp             EETTTCCEEESCTTT----------------------TCSEEEEEEEE-TTEEEEEEE--ETTEEEEEEE
T ss_pred             EECCCCcEEehhhcc----------------------CCCcEEEEEec-CCEEEEEEE--eCCeEEEEEe
Confidence            999999988763 33                      78899999998 344455555  5777666544

>2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}

Probab=100.00  E-value=3.7e-34  Score=234.77  Aligned_cols=214  Identities=12%  Similarity=0.149  Sum_probs=164.3

Q ss_pred             CcCceEEEEEccCC---------CeEEE-------------------ecCCCeEEEeecCCCCCCC------CCCCCCCc
Q 042146           22 HLRAVSYVKFSHDG---------RLLTS-------------------SSAEKTLLTYSLSSISNFD------STPPSPLQ   67 (262)
Q Consensus        22 h~~~v~~~~~~~~~---------~~l~s-------------------~~~d~~i~iw~~~~~~~~~------~~~~~~~~   67 (262)
                      +.+.|.+++|+|++         ++||+                   ++.|++|+||+++......      ......+.
T Consensus       132 ~~~~V~sv~w~p~~~~~~~~~~~~~LAv~~~~~~~~~~~~~~~~laS~s~D~tI~iWd~~~~~~~~~~~~~l~~~~~~V~  211 (524)
T 2j04_B          132 VGGLVTDIAWLNIEENTDIGKDIQYLAVAVSQYMDEPLNEHLEMFDKEKHSSCIQIFKMNTSTLHCVKVQTIVHSFGEVW  211 (524)
T ss_dssp             CCC--CCCSCEEECCCCSSCSSEEEEEEEEEC------------------CEEEEEEEEETTTCCEEEEEEEEECCCSEE
T ss_pred             CCCceeEEEecccCCCCccCcCCeEEEEEEecccCCccchhhhhhccCCCCceEEEEEccCCCCCceEEEEEEecCCcEE
Confidence            57889999999876         56665                   5578999999986543210      00011111


Q ss_pred             cccCCcc-------c----cccceeEEEEecCCCcc-----------ceecccCCcceEEEEEeCCCCEEEeecCCCeEE
Q 042146           68 KFTGHEQ-------G----ISDLATIRLWDVPTATS-----------LKTLIGHTNYVFCINFNPQSNRIVSDTFNETIR  125 (262)
Q Consensus        68 ~~~~~~~-------~----v~~~~~i~v~d~~~~~~-----------~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~  125 (262)
                      .+..+..       .    ....+.|++||+..+..           ...+.+|...|++++|+|+ ..|++|+.||+|+
T Consensus       212 ~v~wsp~~~~~~~~~~LAs~s~DgtvrlWd~~~~~~~~~~~~~~~~p~~~l~~h~~~v~sv~~s~~-~~lasgs~DgtV~  290 (524)
T 2j04_B          212 DLKWHEGCHAPHLVGCLSFVSQEGTINFLEIIDNATDVHVFKMCEKPSLTLSLADSLITTFDFLSP-TTVVCGFKNGFVA  290 (524)
T ss_dssp             EEEECSSCCCSSSSCEEEEEETTSCEEEEECCCCSSSSSEEECCCSCSEEECCTTTCEEEEEESSS-SEEEEEETTSEEE
T ss_pred             EEEECCCCCCCCCCceEEEEecCCeEEEEEcCCCccccccceeecCceEEEEcCCCCEEEEEecCC-CeEEEEeCCCEEE
Confidence            1111110       1    12234899999976642           2356789999999999986 4899999999999


Q ss_pred             EEECCCCe-eeeeeecCCCCeeeE--EEccCC-CEEEEEeCCCeEEEEeCCC----------------------CCccEE
Q 042146          126 IWDIKTGK-CLKVLPAHSDPVTAI--DFNRDG-TMIVTSSYDGLYRILDAST----------------------PNGKFI  179 (262)
Q Consensus       126 vwd~~~~~-~~~~~~~~~~~v~~~--~~~~~~-~~l~~~~~dg~i~~~d~~~----------------------~~~~~l  179 (262)
                      +||++++. +...+.+|...|.++  .|+|++ .+|++|+.|++|++||++.                      |+++.+
T Consensus       291 lWD~~~~~~~~~~~~~H~~~V~sv~~~~s~~g~~~laS~S~D~tvklWD~~~~~~~~~~~~~~~~~~v~~v~fsp~~~~l  370 (524)
T 2j04_B          291 EFDLTDPEVPSFYDQVHDSYILSVSTAYSDFEDTVVSTVAVDGYFYIFNPKDIATTKTTVSRFRGSNLVPVVYCPQIYSY  370 (524)
T ss_dssp             EEETTBCSSCSEEEECSSSCEEEEEEECCTTSCCEEEEEETTSEEEEECGGGHHHHCEEEEECSCCSCCCEEEETTTTEE
T ss_pred             EEECCCCCCceEEeecccccEEEEEEEcCCCCCeEEEEeccCCeEEEEECCCCCcccccccccccCcccceEeCCCcCeE
Confidence            99999764 455688999999999  578887 8999999999999999864                      678889


Q ss_pred             EEEcCCCeEEEEecCCCceeeEEeccCCceeEEEEEEecCCCeeEEccccceEEEEEcCCCCeEEEeeecCCCcEEEEee
Q 042146          180 LVGTLDNTLRLWNYSTRKILKTYSGYTNSKYCISSTFSVTNGKYIVSHRDPVISVASHPAKNIIASGALDNDRTMKIWTQ  259 (262)
Q Consensus       180 ~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~d~d~~i~iw~~  259 (262)
                      ++++.|+.|++||++++.++..+.+                      |.+.|++++|+|++++|++|+  .||+|++|++
T Consensus       371 ~s~~~d~tv~lwd~~~~~~~~~l~g----------------------H~~~V~sva~Sp~g~~l~Sgs--~Dgtv~lwd~  426 (524)
T 2j04_B          371 IYSDGASSLRAVPSRAAFAVHPLVS----------------------RETTITAIGVSRLHPMVLAGS--ADGSLIITNA  426 (524)
T ss_dssp             EEECSSSEEEEEETTCTTCCEEEEE----------------------CSSCEEEEECCSSCCBCEEEE--TTTEEECCBS
T ss_pred             EEeCCCCcEEEEECcccccceeeec----------------------CCCceEEEEeCCCCCeEEEEE--CCCEEEEEec
Confidence            9999999999999999988877776                      899999999999999999999  8999999997


Q ss_pred             c
Q 042146          260 E  260 (262)
Q Consensus       260 ~  260 (262)
                      .
T Consensus       427 ~  427 (524)
T 2j04_B          427 A  427 (524)
T ss_dssp             C
T ss_pred             h
Confidence            5

>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*

Probab=100.00  E-value=5.9e-33  Score=249.78  Aligned_cols=232  Identities=22%  Similarity=0.403  Sum_probs=189.6

Q ss_pred             ceecccCcCceEEEEEccCCCeEEEecCCCeEEEeecCCCCCCCCCCCCCCccccCCcccccc---------------ce
Q 042146           16 TQTLNGHLRAVSYVKFSHDGRLLTSSSAEKTLLTYSLSSISNFDSTPPSPLQKFTGHEQGISD---------------LA   80 (262)
Q Consensus        16 ~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~---------------~~   80 (262)
                      ...+.+|.+.|++++|+|++++|++|+.||+|++||+.+...        ...+.+|...+..               .+
T Consensus       608 ~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~i~vw~~~~~~~--------~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~  679 (1249)
T 3sfz_A          608 RLVVRPHTDAVYHACFSQDGQRIASCGADKTLQVFKAETGEK--------LLDIKAHEDEVLCCAFSSDDSYIATCSADK  679 (1249)
T ss_dssp             SEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCE--------EEEECCCSSCEEEEEECTTSSEEEEEETTS
T ss_pred             eEEEecccccEEEEEECCCCCEEEEEeCCCeEEEEECCCCCE--------EEEeccCCCCEEEEEEecCCCEEEEEeCCC
Confidence            346679999999999999999999999999999999866432        2223333333322               23


Q ss_pred             eEEEEecCCCccceecccCCcceEEEEEeC--CCCEEEeecCCCeEEEEECCCCeeeeeeecCCCCeeeEEEccCCCEEE
Q 042146           81 TIRLWDVPTATSLKTLIGHTNYVFCINFNP--QSNRIVSDTFNETIRIWDIKTGKCLKVLPAHSDPVTAIDFNRDGTMIV  158 (262)
Q Consensus        81 ~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~--~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~  158 (262)
                      .|++||+.+++.+..+.+|...|.+++|+|  ++.++++|+.||.|++||+++++++..+.+|.+.|.+++|+|++++|+
T Consensus       680 ~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~sg~~d~~v~vwd~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~  759 (1249)
T 3sfz_A          680 KVKIWDSATGKLVHTYDEHSEQVNCCHFTNKSNHLLLATGSNDFFLKLWDLNQKECRNTMFGHTNSVNHCRFSPDDELLA  759 (1249)
T ss_dssp             EEEEEETTTCCEEEEEECCSSCEEEEEECSSSSCCEEEEEETTSCEEEEETTSSSEEEEECCCSSCEEEEEECSSTTEEE
T ss_pred             eEEEEECCCCceEEEEcCCCCcEEEEEEecCCCceEEEEEeCCCeEEEEECCCcchhheecCCCCCEEEEEEecCCCEEE
Confidence            899999999999999999999999999999  566899999999999999999999999999999999999999999999


Q ss_pred             EEeCCCeEEEEeCCC---------------------------------CCccEEEEEcCCCeEEEEecCCCceeeEEe-c
Q 042146          159 TSSYDGLYRILDAST---------------------------------PNGKFILVGTLDNTLRLWNYSTRKILKTYS-G  204 (262)
Q Consensus       159 ~~~~dg~i~~~d~~~---------------------------------~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~-~  204 (262)
                      +++.||.|++||++.                                 ++++.+++++ ++.+.+||+.++..+..+. +
T Consensus       760 s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~-~~~v~~~d~~~~~~~~~~~~~  838 (1249)
T 3sfz_A          760 SCSADGTLRLWDVRSANERKSINVKRFFLSSEDPPEDVEVIVKCCSWSADGDKIIVAA-KNKVLLFDIHTSGLLAEIHTG  838 (1249)
T ss_dssp             EEESSSEEEEEEGGGTEEEEEEECCCCC--------CCCCCBCCCCBCTTSSEEEEEE-TTEEEEEETTTCCEEEEEECS
T ss_pred             EEECCCeEEEEeCCCCcccceecccccccccCCccccccceEEEEEECCCCCEEEEEc-CCcEEEEEecCCCceeEEcCC
Confidence            999999999999753                                 5677777776 6788899988888777665 4


Q ss_pred             cCCceeEEEEEEecCCCeeE----------------------EccccceEEEEEcCCCCeEEEeeecCCCcEEEEeec
Q 042146          205 YTNSKYCISSTFSVTNGKYI----------------------VSHRDPVISVASHPAKNIIASGALDNDRTMKIWTQE  260 (262)
Q Consensus       205 ~~~~~~~~~~~~~~~~~~~~----------------------~~~~~~v~~~~~~p~~~~l~~~~~d~d~~i~iw~~~  260 (262)
                      +...+.++.  +++....++                      .+|...|.+++|+|+++.|++++  .||.|++|++.
T Consensus       839 ~~~~v~~~~--~sp~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~h~~~v~~v~~spdg~~l~s~s--~dg~v~vw~~~  912 (1249)
T 3sfz_A          839 HHSTIQYCD--FSPYDHLAVIALSQYCVELWNIDSRLKVADCRGHLSWVHGVMFSPDGSSFLTAS--DDQTIRVWETK  912 (1249)
T ss_dssp             SSSCCCEEE--ECSSTTEEEEECSSSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEE--TTSCEEEEEHH
T ss_pred             CCCceEEEE--EcCCCCEEEEEeCCCeEEEEEcCCCceeeecCCCccceEEEEECCCCCEEEEEe--CCCeEEEEEcc
Confidence            444444433  222222221                      23888999999999999999999  89999999975

>2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A

Probab=100.00  E-value=8.4e-34  Score=216.06  Aligned_cols=196  Identities=14%  Similarity=0.170  Sum_probs=150.4

Q ss_pred             ceEEEEEccC----CCeEEEecCCCeEEEeecCCCCCCCCCCCCCCcc-ccCCccccccceeEEEEec-CCCccceeccc
Q 042146           25 AVSYVKFSHD----GRLLTSSSAEKTLLTYSLSSISNFDSTPPSPLQK-FTGHEQGISDLATIRLWDV-PTATSLKTLIG   98 (262)
Q Consensus        25 ~v~~~~~~~~----~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~-~~~~~~~v~~~~~i~v~d~-~~~~~~~~~~~   98 (262)
                      .|++++|+|+    ++++++++.  .+++|++.+.+        .+.. ..+|.      ..|++|++ .+++.+..+..
T Consensus       113 ~v~sla~spd~~~~~~~l~s~g~--~~~v~~l~~g~--------lv~ss~~g~d------~~V~~~~~s~dG~~~~s~~~  176 (356)
T 2w18_A          113 EIRALFCSSDDESEKQVLLKSGN--IKAVLGLTKRR--------LVSSSGTLSD------QQVEVMTFAEDGGGKENQFL  176 (356)
T ss_dssp             EEEEECC------CCEEEEEEEE--EEEEEEETTTE--------EEEEESSSTT------CEEEEEEECTTSCEEEEEEE
T ss_pred             ceEEEEECCCccccccEEEeCCC--eEEEEecCCCc--------EEEecccCCC------CcEEEEEECCCCceeeeecc
Confidence            5566667777    778888774  47788763211        1111 12222      36999999 55888888889


Q ss_pred             CCcceEEEEEeC---CCCEEEeecCCCeEEEEECCCCeeeeeeecCCC---CeeeEEEccCCCEE------------EEE
Q 042146           99 HTNYVFCINFNP---QSNRIVSDTFNETIRIWDIKTGKCLKVLPAHSD---PVTAIDFNRDGTMI------------VTS  160 (262)
Q Consensus        99 ~~~~v~~~~~~~---~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~---~v~~~~~~~~~~~l------------~~~  160 (262)
                      |...+..++|+|   ++.+|++++.|++|+|||++++++++++.+|..   .+.+++|+|+|.++            ++|
T Consensus       177 ~~~~v~~l~fs~~~g~~~~LaSgS~D~TIkIWDl~TGk~l~tL~g~~~~v~~v~~vafSpdG~~lvs~s~~~~~w~laSG  256 (356)
T 2w18_A          177 MPPEETILTFAEVQGMQEALLGTTIMNNIVIWNLKTGQLLKKMHIDDSYQASVCHKAYSEMGLLFIVLSHPCAKESESLR  256 (356)
T ss_dssp             CCCSSCEEEEEEEETSTTEEEEEETTSEEEEEETTTCCEEEEEECCC---CCCEEEEEEETTEEEEEEC-----------
T ss_pred             CCCceeeEEeeccCCCCceEEEecCCCcEEEEECCCCcEEEEEcCCCcceeeeEEEEECCCCCEEEEeccCCCcceeecc
Confidence            999999999999   779999999999999999999999999986543   67778999999876            567


Q ss_pred             eCCCeEEEEeCCC-----------CCcc------------EEEEEcCCCeEEEEecCCCceeeEEeccCCceeEEEEEEe
Q 042146          161 SYDGLYRILDAST-----------PNGK------------FILVGTLDNTLRLWNYSTRKILKTYSGYTNSKYCISSTFS  217 (262)
Q Consensus       161 ~~dg~i~~~d~~~-----------~~~~------------~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~  217 (262)
                      +.|++|++||..+           |+++            ++++|+.|++|+|||+.+++++.++.+             
T Consensus       257 s~D~tIklWd~~tgk~l~v~~~~~p~Gh~~~~lsg~~sg~~lASgS~DgTIkIWDl~tGk~l~tL~g-------------  323 (356)
T 2w18_A          257 SPVFQLIVINPKTTLSVGVMLYCLPPGQAGRFLEGDVKDHCAAAILTSGTIAIWDLLLGQCTALLPP-------------  323 (356)
T ss_dssp             -CCEEEEEEETTTTEEEEEEEECCCTTCCCCEEEEEEETTEEEEEETTSCEEEEETTTCSEEEEECC-------------
T ss_pred             CCCcEEEEEECCCCEEEEEEEeeccCCCcceeEccccCCCEEEEEcCCCcEEEEECCCCcEEEEecC-------------
Confidence            8899999999775           2333            578899999999999999999999987             


Q ss_pred             cCCCeeEEccccce-EEEEEcCCCCeEEEeeecCCCcEEEEeec
Q 042146          218 VTNGKYIVSHRDPV-ISVASHPAKNIIASGALDNDRTMKIWTQE  260 (262)
Q Consensus       218 ~~~~~~~~~~~~~v-~~~~~~p~~~~l~~~~~d~d~~i~iw~~~  260 (262)
                               |...+ ..++|+|++++|++|+  .|++|+||++.
T Consensus       324 ---------H~~~vvs~vafSPDG~~LaSGS--~D~TIklWd~~  356 (356)
T 2w18_A          324 ---------VSDQHWSFVKWSGTDSHLLAGQ--KDGNIFVYHYS  356 (356)
T ss_dssp             ---------C--CCCCEEEECSSSSEEEEEC--TTSCEEEEEEC
T ss_pred             ---------CCCCeEEEEEECCCCCEEEEEE--CCCcEEEecCC
Confidence                     65544 4689999999999999  89999999973

>3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens}

Probab=100.00  E-value=1.9e-33  Score=227.52  Aligned_cols=230  Identities=17%  Similarity=0.353  Sum_probs=167.4

Q ss_pred             cCcCceEEEEEccCCCeEEEecCCCeEEEeecCCCCCCCC---CCCCCCccccCCc------------ccc---------
Q 042146           21 GHLRAVSYVKFSHDGRLLTSSSAEKTLLTYSLSSISNFDS---TPPSPLQKFTGHE------------QGI---------   76 (262)
Q Consensus        21 ~h~~~v~~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~---~~~~~~~~~~~~~------------~~v---------   76 (262)
                      .|.+.|++++|+|++++||+|+.||.|++|++........   ........+.+|.            ..+         
T Consensus        26 ~~~~~V~~v~~s~~g~~la~g~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~V~~l~~~~~~  105 (447)
T 3dw8_B           26 AEADIISTVEFNHSGELLATGDKGGRVVIFQQEQENKIQSHSRGEYNVYSTFQSHEPEFDYLKSLEIEEKINKIRWLPQK  105 (447)
T ss_dssp             CGGGSEEEEEECSSSSEEEEEETTSEEEEEEECC-----CCCCCCEEEEEEEECCCCEEEGGGTEEECCCCCEEEECCCC
T ss_pred             cccCcEEEEEECCCCCEEEEEcCCCeEEEEEecCCCCCCcccccceeEecccccccccccccccccccCceEEEEEcCCC
Confidence            4689999999999999999999999999999876432100   0000112222232            111         


Q ss_pred             --------ccceeEEEEecCCCccc---------------------------------------ee-cccCCcceEEEEE
Q 042146           77 --------SDLATIRLWDVPTATSL---------------------------------------KT-LIGHTNYVFCINF  108 (262)
Q Consensus        77 --------~~~~~i~v~d~~~~~~~---------------------------------------~~-~~~~~~~v~~~~~  108 (262)
                              ...+.|++||+.++...                                       .. ..+|...|.+++|
T Consensus       106 ~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~  185 (447)
T 3dw8_B          106 NAAQFLLSTNDKTIKLWKISERDKRPEGYNLKEEDGRYRDPTTVTTLRVPVFRPMDLMVEASPRRIFANAHTYHINSISI  185 (447)
T ss_dssp             SSSEEEEEECSSCEEEEEEEEEEEEEECCSCC--------CCCCCSCCCCEEEEEEEEEEEEEEEEECSCCSSCCCEEEE
T ss_pred             CcceEEEeCCCCeEEEEecccccCCcceecccCccccccCcccccceEeccccchheeeeccceEEeccCCCcceEEEEE
Confidence                    12238999998764331                                       11 3579999999999


Q ss_pred             eCCCCEEEeecCCCeEEEEECCC-Ceeee-------eeecCCCCeeeEEEccCC-CEEEEEeCCCeEEEEeCCC------
Q 042146          109 NPQSNRIVSDTFNETIRIWDIKT-GKCLK-------VLPAHSDPVTAIDFNRDG-TMIVTSSYDGLYRILDAST------  173 (262)
Q Consensus       109 ~~~~~~l~~~~~dg~i~vwd~~~-~~~~~-------~~~~~~~~v~~~~~~~~~-~~l~~~~~dg~i~~~d~~~------  173 (262)
                      +|++++|++| .|+.|++||+++ ++.+.       .+..|...|.+++|+|++ ++|++++.||.|++||++.      
T Consensus       186 ~~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~  264 (447)
T 3dw8_B          186 NSDYETYLSA-DDLRINLWHLEITDRSFNIVDIKPANMEELTEVITAAEFHPNSCNTFVYSSSKGTIRLCDMRASALCDR  264 (447)
T ss_dssp             CTTSSEEEEE-CSSEEEEEETTEEEEEEEEEECCCSSGGGCCCCEEEEEECSSCTTEEEEEETTSCEEEEETTTCSSSCT
T ss_pred             cCCCCEEEEe-CCCeEEEEECCCCCceeeeeecccccccccCcceEEEEECCCCCcEEEEEeCCCeEEEEECcCCccccc
Confidence            9999999999 799999999984 44444       356799999999999998 9999999999999999764      


Q ss_pred             ------------------------------CCccEEEEEcCCCeEEEEecCC-CceeeEEeccCCceeEEEEEEecCCCe
Q 042146          174 ------------------------------PNGKFILVGTLDNTLRLWNYST-RKILKTYSGYTNSKYCISSTFSVTNGK  222 (262)
Q Consensus       174 ------------------------------~~~~~l~~~~~dg~i~i~d~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~  222 (262)
                                                    |++++|++++. +.|++||+++ ++++..+..|......+...+. .   
T Consensus       265 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~-~~v~iwd~~~~~~~~~~~~~~~~~~~~l~~~~~-~---  339 (447)
T 3dw8_B          265 HSKLFEEPEDPSNRSFFSEIISSISDVKFSHSGRYMMTRDY-LSVKVWDLNMENRPVETYQVHEYLRSKLCSLYE-N---  339 (447)
T ss_dssp             TCEEECCC-----CCHHHHHTTCEEEEEECTTSSEEEEEES-SEEEEEETTCCSSCSCCEESCGGGTTTHHHHHH-T---
T ss_pred             eeeEeccCCCccccccccccCceEEEEEECCCCCEEEEeeC-CeEEEEeCCCCccccceeecccccccccccccc-c---
Confidence                                          56789999998 9999999997 8888888874321000000000 0   


Q ss_pred             eEEccccceEEEEEcCCCCeEEEeeecCCCcEEEEeecc
Q 042146          223 YIVSHRDPVISVASHPAKNIIASGALDNDRTMKIWTQEK  261 (262)
Q Consensus       223 ~~~~~~~~v~~~~~~p~~~~l~~~~~d~d~~i~iw~~~~  261 (262)
                         ..-..+..++|+|++++|++++  .||.|++||+..
T Consensus       340 ---~~i~~~~~~~~s~~~~~l~s~s--~dg~v~iwd~~~  373 (447)
T 3dw8_B          340 ---DCIFDKFECCWNGSDSVVMTGS--YNNFFRMFDRNT  373 (447)
T ss_dssp             ---SGGGCCCCEEECTTSSEEEEEC--STTEEEEEETTT
T ss_pred             ---cccccceEEEECCCCCEEEEec--cCCEEEEEEcCC
Confidence               0000134599999999999999  899999999864

>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A

Probab=100.00  E-value=2.5e-33  Score=220.87  Aligned_cols=233  Identities=16%  Similarity=0.273  Sum_probs=178.2

Q ss_pred             ecccCcCceEEEEEccC----CCeEEEecCCCeEEEeecCCCCCCCCC-------CCCCCcc--ccCCc---c-cc---c
Q 042146           18 TLNGHLRAVSYVKFSHD----GRLLTSSSAEKTLLTYSLSSISNFDST-------PPSPLQK--FTGHE---Q-GI---S   77 (262)
Q Consensus        18 ~~~~h~~~v~~~~~~~~----~~~l~s~~~d~~i~iw~~~~~~~~~~~-------~~~~~~~--~~~~~---~-~v---~   77 (262)
                      ..++|.++|++++|+|+    ...+++++.++.|++||+.........       ....+..  +....   . .+   .
T Consensus        13 ~~~~h~~~v~~i~~~p~~~~~~~~~~~~~~~~~v~vw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~   92 (366)
T 3k26_A           13 LKEDHNQPLFGVQFNWHSKEGDPLVFATVGSNRVTLYECHSQGEIRLLQSYVDADADENFYTCAWTYDSNTSHPLLAVAG   92 (366)
T ss_dssp             EECTTCSCEEEEEECTTCCTTSCEEEEEEETTEEEEEEECGGGCEEEEEEEECSCTTCCEEEEEEEECTTTCCEEEEEEE
T ss_pred             eecCCCCceEEEEEecccCCCCceEEEECCCCEEEEEEcCCCcEEEeeeeccccCCCCcEEEEEeccCCCCCCCEEEEec
Confidence            44589999999999984    456677777789999998754321110       0111111  11110   0 11   1


Q ss_pred             cceeEEEEecCCCccceecccCCcceEEEEEeC-CCCEEEeecCCCeEEEEECCCCeeeeee---ecCCCCeeeEEEccC
Q 042146           78 DLATIRLWDVPTATSLKTLIGHTNYVFCINFNP-QSNRIVSDTFNETIRIWDIKTGKCLKVL---PAHSDPVTAIDFNRD  153 (262)
Q Consensus        78 ~~~~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~dg~i~vwd~~~~~~~~~~---~~~~~~v~~~~~~~~  153 (262)
                      ..+.|++||+.+++.+..+.+|...|.+++|+| ++++|++++.||.|++||+++++.+..+   ..|...|.+++|+|+
T Consensus        93 ~dg~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~  172 (366)
T 3k26_A           93 SRGIIRIINPITMQCIKHYVGHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQTDTLVAIFGGVEGHRDEVLSADYDLL  172 (366)
T ss_dssp             TTCEEEEECTTTCCEEEEEESCCSCEEEEEECSSCTTEEEEEETTSCEEEEETTTTEEEEEECSTTSCSSCEEEEEECTT
T ss_pred             CCCEEEEEEchhceEeeeecCCCCcEEEEEECCCCCCEEEEEeCCCeEEEEEeecCeEEEEecccccccCceeEEEECCC
Confidence            233899999999999999999999999999999 9999999999999999999999988887   679999999999999


Q ss_pred             CCEEEEEeCCCeEEEEeCCCC----------------------------------------------CccEEEEEcCCCe
Q 042146          154 GTMIVTSSYDGLYRILDASTP----------------------------------------------NGKFILVGTLDNT  187 (262)
Q Consensus       154 ~~~l~~~~~dg~i~~~d~~~~----------------------------------------------~~~~l~~~~~dg~  187 (262)
                      +++|++++.||.|++||++..                                              .++++++++.||.
T Consensus       173 ~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~d~~  252 (366)
T 3k26_A          173 GEKIMSCGMDHSLKLWRINSKRMMNAIKESYDYNPNKTNRPFISQKIHFPDFSTRDIHRNYVDCVRWLGDLILSKSCENA  252 (366)
T ss_dssp             SSEEEEEETTSCEEEEESCSHHHHHHHHHHHTCCGGGCSSCCCCEEECCCSEEECSSCSSCCCEEEEETTEEEEECSSSE
T ss_pred             CCEEEEecCCCCEEEEECCCCccccccceeEEecCCCCcccccceeeccCccccccCCcceEEEEEEcCCEEEEEecCCE
Confidence            999999999999999999860                                              1779999999999


Q ss_pred             EEEEecCCCcee-eEEeccCCceeEEEEEEecCCCeeEEccccceEEEEEcCC--CCeEEEeeecCCCcEEEEeecc
Q 042146          188 LRLWNYSTRKIL-KTYSGYTNSKYCISSTFSVTNGKYIVSHRDPVISVASHPA--KNIIASGALDNDRTMKIWTQEK  261 (262)
Q Consensus       188 i~i~d~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~--~~~l~~~~~d~d~~i~iw~~~~  261 (262)
                      |++||+++++.. ..+..+......+..         +..|...|.+++|+|+  +++|++++  .||.|++|+++.
T Consensus       253 i~~wd~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~v~~~~~s~~~~~~~l~~~~--~dg~i~vwd~~~  318 (366)
T 3k26_A          253 IVCWKPGKMEDDIDKIKPSESNVTILGR---------FDYSQCDIWYMRFSMDFWQKMLALGN--QVGKLYVWDLEV  318 (366)
T ss_dssp             EEEEEESSTTCCGGGCCTTCCCEEEEEE---------EECSSCCSSCCCCEECTTSSEEEEEC--TTSCEEEEECCS
T ss_pred             EEEEeCCCccccccccccCCcchheecc---------ccccCCcEEEEEEcCCCCCcEEEEEe--cCCcEEEEECCC
Confidence            999999887541 111111111111111         1128889999999999  99999999  899999999864

>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}

Probab=100.00  E-value=9.7e-33  Score=217.54  Aligned_cols=214  Identities=16%  Similarity=0.333  Sum_probs=156.4

Q ss_pred             cccccceecccCcCceEEEEEccC---CCeEEEecCCCeEEEeecCCCCCCCCCCCCCCccccCCccccccceeEEEEec
Q 042146           11 RPYTLTQTLNGHLRAVSYVKFSHD---GRLLTSSSAEKTLLTYSLSSISNFDSTPPSPLQKFTGHEQGISDLATIRLWDV   87 (262)
Q Consensus        11 ~~~~~~~~~~~h~~~v~~~~~~~~---~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~i~v~d~   87 (262)
                      .+.+.++.+++|.+.|++++|+|+   |++|++|+.||.|++||++.                                 
T Consensus        27 ~~~~~~~~~~~h~~~v~~~~~~~~~~~g~~l~~~~~dg~i~iw~~~~---------------------------------   73 (368)
T 3mmy_A           27 NPMKDIEVTSSPDDSIGCLSFSPPTLPGNFLIAGSWANDVRCWEVQD---------------------------------   73 (368)
T ss_dssp             CTTCCEECSSCCSSCEEEEEECCTTSSSEEEEEEETTSEEEEEEECT---------------------------------
T ss_pred             CCcceeEeccCCCCceEEEEEcCCCCCceEEEEECCCCcEEEEEcCC---------------------------------
Confidence            467788889999999999999999   59999999999999997643                                 


Q ss_pred             CCCccc-eecccCCcceEEEEEeCCCCEEEeecCCCeEEEEECCCCeeeeeeecCCCCeeeEEE--ccCCCEEEEEeCCC
Q 042146           88 PTATSL-KTLIGHTNYVFCINFNPQSNRIVSDTFNETIRIWDIKTGKCLKVLPAHSDPVTAIDF--NRDGTMIVTSSYDG  164 (262)
Q Consensus        88 ~~~~~~-~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~--~~~~~~l~~~~~dg  164 (262)
                       .+..+ ..+.+|...|.+++|+|++++|++++.||.|++||+++++.+. +..|..+|.+++|  +|++++|++++.||
T Consensus        74 -~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~-~~~~~~~v~~~~~~~~~~~~~l~~~~~dg  151 (368)
T 3mmy_A           74 -SGQTIPKAQQMHTGPVLDVCWSDDGSKVFTASCDKTAKMWDLSSNQAIQ-IAQHDAPVKTIHWIKAPNYSCVMTGSWDK  151 (368)
T ss_dssp             -TSCEEEEEEEECSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEE-EEECSSCEEEEEEEECSSCEEEEEEETTS
T ss_pred             -CCceeEEEeccccCCEEEEEECcCCCEEEEEcCCCcEEEEEcCCCCcee-eccccCceEEEEEEeCCCCCEEEEccCCC
Confidence             12232 5677899999999999999999999999999999999998776 4569999999999  88999999999999


Q ss_pred             eEEEEeCCC-----------------CCccEEEEEcCCCeEEEEecCCCceeeEEec--cCCceeEEEEEEe--------
Q 042146          165 LYRILDAST-----------------PNGKFILVGTLDNTLRLWNYSTRKILKTYSG--YTNSKYCISSTFS--------  217 (262)
Q Consensus       165 ~i~~~d~~~-----------------~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~--~~~~~~~~~~~~~--------  217 (262)
                      .|++||++.                 .....+++++.++.+++|+++..........  ......++.....        
T Consensus       152 ~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  231 (368)
T 3mmy_A          152 TLKFWDTRSSNPMMVLQLPERCYCADVIYPMAVVATAERGLIVYQLENQPSEFRRIESPLKHQHRCVAIFKDKQNKPTGF  231 (368)
T ss_dssp             EEEEECSSCSSCSEEEECSSCEEEEEEETTEEEEEEGGGCEEEEECSSSCEEEEECCCSCSSCEEEEEEEECTTSCEEEE
T ss_pred             cEEEEECCCCcEEEEEecCCCceEEEecCCeeEEEeCCCcEEEEEeccccchhhhccccccCCCceEEEcccCCCCCCeE
Confidence            999999876                 1223444455555555555543321111100  0011111111000        


Q ss_pred             ---cCCC----------------eeEEccc------------cceEEEEEcCCCCeEEEeeecCCCcEEEEeecc
Q 042146          218 ---VTNG----------------KYIVSHR------------DPVISVASHPAKNIIASGALDNDRTMKIWTQEK  261 (262)
Q Consensus       218 ---~~~~----------------~~~~~~~------------~~v~~~~~~p~~~~l~~~~~d~d~~i~iw~~~~  261 (262)
                         ..++                ..+.+|.            .+|.+++|+|++++|++++  .||.|++||+++
T Consensus       232 ~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~--~dg~i~iwd~~~  304 (368)
T 3mmy_A          232 ALGSIEGRVAIHYINPPNPAKDNFTFKCHRSNGTNTSAPQDIYAVNGIAFHPVHGTLATVG--SDGRFSFWDKDA  304 (368)
T ss_dssp             EEEETTSEEEEEESSCSCHHHHSEEEECSEEC----CCCEEECCEEEEEECTTTCCEEEEE--TTSCEEEEETTT
T ss_pred             EEecCCCcEEEEecCCCCccccceeeeeeecccccccccccccceEEEEEecCCCEEEEEc--cCCeEEEEECCC
Confidence               0000                0111133            3799999999999999999  899999999864

>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A

Probab=100.00  E-value=4.4e-33  Score=217.78  Aligned_cols=226  Identities=12%  Similarity=0.137  Sum_probs=177.6

Q ss_pred             ceecccCcCceEEEEEccCCCeEEEecCCCeEEEeecCCCC----CCCC-CCCCCCccc--cCCcc-cc---ccceeEEE
Q 042146           16 TQTLNGHLRAVSYVKFSHDGRLLTSSSAEKTLLTYSLSSIS----NFDS-TPPSPLQKF--TGHEQ-GI---SDLATIRL   84 (262)
Q Consensus        16 ~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~iw~~~~~~----~~~~-~~~~~~~~~--~~~~~-~v---~~~~~i~v   84 (262)
                      .....+|.+.|++++|+|++++|++++.|+.|++|++....    .... .....+..+  ..... .+   ...+.|++
T Consensus         4 ~~~~~~h~~~v~~~~~s~~~~~l~~~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~   83 (342)
T 1yfq_A            4 VQIEQAPKDYISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCCNFIDNTDLQIYVGTVQGEILK   83 (342)
T ss_dssp             EECSSCCSSCEEEEEEEGGGTEEEEEETTSEEEEEEEETTTTEEEEEEEEECSSCEEEEEEEESSSEEEEEEETTSCEEE
T ss_pred             eecccCCCCcEEEEEEcCCCCEEEEEcCCCeEEEEEeCCCCccccceeeeecCCceEEEEECCCCCcEEEEEcCCCeEEE
Confidence            44556899999999999999999999999999999987643    1100 011111111  11111 11   12338999


Q ss_pred             Eec-CCCccceeccc--CCcceEEEEEeCCCCEEEeecCCCeEEEEECCC---------CeeeeeeecCCCCeeeEEEcc
Q 042146           85 WDV-PTATSLKTLIG--HTNYVFCINFNPQSNRIVSDTFNETIRIWDIKT---------GKCLKVLPAHSDPVTAIDFNR  152 (262)
Q Consensus        85 ~d~-~~~~~~~~~~~--~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~---------~~~~~~~~~~~~~v~~~~~~~  152 (262)
                      ||+ .+++. ..+..  |...|.+++|+| ++++++++.|+.|++||+++         ++++..+. |...+.+++|+|
T Consensus        84 wd~~~~~~~-~~~~~~~~~~~v~~l~~~~-~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~-~~~~v~~~~~~~  160 (342)
T 1yfq_A           84 VDLIGSPSF-QALTNNEANLGICRICKYG-DDKLIAASWDGLIEVIDPRNYGDGVIAVKNLNSNNTK-VKNKIFTMDTNS  160 (342)
T ss_dssp             ECSSSSSSE-EECBSCCCCSCEEEEEEET-TTEEEEEETTSEEEEECHHHHTTBCEEEEESCSSSSS-SCCCEEEEEECS
T ss_pred             EEeccCCce-EeccccCCCCceEEEEeCC-CCEEEEEcCCCeEEEEcccccccccccccCCeeeEEe-eCCceEEEEecC
Confidence            999 76654 67778  999999999999 99999999999999999998         77777776 889999999998


Q ss_pred             CCCEEEEEeCCCeEEEEeCCC-----------------------C-CccEEEEEcCCCeEEEEecCCC------ceeeEE
Q 042146          153 DGTMIVTSSYDGLYRILDAST-----------------------P-NGKFILVGTLDNTLRLWNYSTR------KILKTY  202 (262)
Q Consensus       153 ~~~~l~~~~~dg~i~~~d~~~-----------------------~-~~~~l~~~~~dg~i~i~d~~~~------~~~~~~  202 (262)
                      ++  +++++.|+.|++||++.                       + +++++++++.||.|++|+++..      +....+
T Consensus       161 ~~--l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~  238 (342)
T 1yfq_A          161 SR--LIVGMNNSQVQWFRLPLCEDDNGTIEESGLKYQIRDVALLPKEQEGYACSSIDGRVAVEFFDDQGDDYNSSKRFAF  238 (342)
T ss_dssp             SE--EEEEESTTEEEEEESSCCTTCCCEEEECSCSSCEEEEEECSGGGCEEEEEETTSEEEEEECCTTCCSTTCTTCEEE
T ss_pred             Cc--EEEEeCCCeEEEEECCccccccceeeecCCCCceeEEEECCCCCCEEEEEecCCcEEEEEEcCCCcccccccceee
Confidence            87  99999999999999864                       5 8899999999999999999887      777777


Q ss_pred             eccCCceeEEEEEEecCCCeeEEccccceEEEEEcCCCCeEEEeeecCCCcEEEEeecc
Q 042146          203 SGYTNSKYCISSTFSVTNGKYIVSHRDPVISVASHPAKNIIASGALDNDRTMKIWTQEK  261 (262)
Q Consensus       203 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~d~d~~i~iw~~~~  261 (262)
                      ..+......             .+|...|.+++|+|++++|++++  .||.|++||+.+
T Consensus       239 ~~~~~~~~~-------------~~~~~~i~~~~~s~~~~~l~~~~--~dg~i~vwd~~~  282 (342)
T 1yfq_A          239 RCHRLNLKD-------------TNLAYPVNSIEFSPRHKFLYTAG--SDGIISCWNLQT  282 (342)
T ss_dssp             ECCCCCTTC-------------CSSCCCEEEEEECTTTCCEEEEE--TTSCEEEEETTT
T ss_pred             ecccccccc-------------cccceeEEEEEEcCCCCEEEEec--CCceEEEEcCcc
Confidence            764321000             01455999999999999999999  899999999864

>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*

Probab=100.00  E-value=9.2e-33  Score=248.54  Aligned_cols=250  Identities=19%  Similarity=0.353  Sum_probs=192.3

Q ss_pred             CCCCceeeec--ccccceecccCcCceEEEEEccCCCeEEEecCCCeEEEeecCCCCCCCCCCCCCCccccCCccccc--
Q 042146            2 SSDRSLESFR--PYTLTQTLNGHLRAVSYVKFSHDGRLLTSSSAEKTLLTYSLSSISNFDSTPPSPLQKFTGHEQGIS--   77 (262)
Q Consensus         2 s~d~~i~~~~--~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~--   77 (262)
                      +.|++|..|+  +.+.+..+.+|.+.|.+++|+|++++|++++.||+|++||+.+...        ...+.+|...+.  
T Consensus       634 ~~d~~i~vw~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~v~vwd~~~~~~--------~~~~~~~~~~v~~~  705 (1249)
T 3sfz_A          634 GADKTLQVFKAETGEKLLDIKAHEDEVLCCAFSSDDSYIATCSADKKVKIWDSATGKL--------VHTYDEHSEQVNCC  705 (1249)
T ss_dssp             ETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCE--------EEEEECCSSCEEEE
T ss_pred             eCCCeEEEEECCCCCEEEEeccCCCCEEEEEEecCCCEEEEEeCCCeEEEEECCCCce--------EEEEcCCCCcEEEE
Confidence            3688888886  5667888999999999999999999999999999999999876432        222222222221  


Q ss_pred             ---------------cceeEEEEecCCCccceecccCCcceEEEEEeCCCCEEEeecCCCeEEEEECCCCeeeeee----
Q 042146           78 ---------------DLATIRLWDVPTATSLKTLIGHTNYVFCINFNPQSNRIVSDTFNETIRIWDIKTGKCLKVL----  138 (262)
Q Consensus        78 ---------------~~~~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~----  138 (262)
                                     ..+.|++||+.+++.+..+.+|...|.+++|+|+++++++++.||.|++||+++++....+    
T Consensus       706 ~~~~~~~~~~l~sg~~d~~v~vwd~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~  785 (1249)
T 3sfz_A          706 HFTNKSNHLLLATGSNDFFLKLWDLNQKECRNTMFGHTNSVNHCRFSPDDELLASCSADGTLRLWDVRSANERKSINVKR  785 (1249)
T ss_dssp             EECSSSSCCEEEEEETTSCEEEEETTSSSEEEEECCCSSCEEEEEECSSTTEEEEEESSSEEEEEEGGGTEEEEEEECCC
T ss_pred             EEecCCCceEEEEEeCCCeEEEEECCCcchhheecCCCCCEEEEEEecCCCEEEEEECCCeEEEEeCCCCcccceecccc
Confidence                           2237999999999999999999999999999999999999999999999999876543322    


Q ss_pred             ---------------------------------------------------ecCCCCeeeEEEccCCCEEEEEeCCCeEE
Q 042146          139 ---------------------------------------------------PAHSDPVTAIDFNRDGTMIVTSSYDGLYR  167 (262)
Q Consensus       139 ---------------------------------------------------~~~~~~v~~~~~~~~~~~l~~~~~dg~i~  167 (262)
                                                                         .+|...|.+++|+|+++++++++.||.|+
T Consensus       786 ~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~~~~v~~~d~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~dg~v~  865 (1249)
T 3sfz_A          786 FFLSSEDPPEDVEVIVKCCSWSADGDKIIVAAKNKVLLFDIHTSGLLAEIHTGHHSTIQYCDFSPYDHLAVIALSQYCVE  865 (1249)
T ss_dssp             CC--------CCCCCBCCCCBCTTSSEEEEEETTEEEEEETTTCCEEEEEECSSSSCCCEEEECSSTTEEEEECSSSCEE
T ss_pred             cccccCCccccccceEEEEEECCCCCEEEEEcCCcEEEEEecCCCceeEEcCCCCCceEEEEEcCCCCEEEEEeCCCeEE
Confidence                                                               15778899999999999999999999999


Q ss_pred             EEeCCC--------------------CCccEEEEEcCCCeEEEEecCCCcee----------------------------
Q 042146          168 ILDAST--------------------PNGKFILVGTLDNTLRLWNYSTRKIL----------------------------  199 (262)
Q Consensus       168 ~~d~~~--------------------~~~~~l~~~~~dg~i~i~d~~~~~~~----------------------------  199 (262)
                      +||+..                    ++++++++++.||.|++||+.+....                            
T Consensus       866 vwd~~~~~~~~~~~~h~~~v~~v~~spdg~~l~s~s~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  945 (1249)
T 3sfz_A          866 LWNIDSRLKVADCRGHLSWVHGVMFSPDGSSFLTASDDQTIRVWETKKVCKNSAIVLKQEIDVVFQENETMVLAVDNIRG  945 (1249)
T ss_dssp             EEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEEHHHHHSCCSSSEEEEEEEEEETTEEEEEEEESSSS
T ss_pred             EEEcCCCceeeecCCCccceEEEEECCCCCEEEEEeCCCeEEEEEccccceeeeecccceeeEEEcCCCcEEEEecCCcc
Confidence            999876                    78899999999999999997532100                            


Q ss_pred             -eEEeccCC------ceeEEEEEEecCCCeeEE----------------------ccccceEEEEEcCCCCeEEEeeecC
Q 042146          200 -KTYSGYTN------SKYCISSTFSVTNGKYIV----------------------SHRDPVISVASHPAKNIIASGALDN  250 (262)
Q Consensus       200 -~~~~~~~~------~~~~~~~~~~~~~~~~~~----------------------~~~~~v~~~~~~p~~~~l~~~~~d~  250 (262)
                       ........      ........+++....++.                      +|...|.+++|+|++++|++++  .
T Consensus       946 ~~~~~~~~~~~~~~~~~~i~~~~~sp~g~~l~~g~~~g~i~i~d~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~~--~ 1023 (1249)
T 3sfz_A          946 LQLIAGKTGQIDYLPEAQVSCCCLSPHLEYVAFGDEDGAIKIIELPNNRVFSSGVGHKKAVRHIQFTADGKTLISSS--E 1023 (1249)
T ss_dssp             EEEEEESSCCEEEECCSCEEEEEECTTSSEEEEEETTSCCEEEETTTTSCEEECCCCSSCCCCEEECSSSSCEEEEC--S
T ss_pred             eEEEecCcceEEEcccCcEEEEEEcCCCCEEEEEcCCCCEEEEEcCCCceeeecccCCCceEEEEECCCCCEEEEEc--C
Confidence             00000000      011222333333333222                      3888999999999999999999  8


Q ss_pred             CCcEEEEeecc
Q 042146          251 DRTMKIWTQEK  261 (262)
Q Consensus       251 d~~i~iw~~~~  261 (262)
                      ||.|++|++..
T Consensus      1024 dg~i~vwd~~~ 1034 (1249)
T 3sfz_A         1024 DSVIQVWNWQT 1034 (1249)
T ss_dssp             SSBEEEEETTT
T ss_pred             CCEEEEEECCC
Confidence            99999999864

>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}

Probab=100.00  E-value=4.8e-33  Score=238.53  Aligned_cols=189  Identities=25%  Similarity=0.486  Sum_probs=162.7

Q ss_pred             ceecccCcCceEEEEEccCCCeEEEecCCCeEEEeecCCCCCCCCCCCCCCccccCCccccccceeEEEEecCCCcccee
Q 042146           16 TQTLNGHLRAVSYVKFSHDGRLLTSSSAEKTLLTYSLSSISNFDSTPPSPLQKFTGHEQGISDLATIRLWDVPTATSLKT   95 (262)
Q Consensus        16 ~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~i~v~d~~~~~~~~~   95 (262)
                      +..+.+|.++|++++|+|++++|++|+.||.|++||+..                                 .+++.+..
T Consensus         2 ~~~l~gH~~~V~~l~~s~dg~~latg~~dg~I~vwd~~~---------------------------------~~~~~~~~   48 (753)
T 3jro_A            2 VVIANAHNELIHDAVLDYYGKRLATCSSDKTIKIFEVEG---------------------------------ETHKLIDT   48 (753)
T ss_dssp             ------CCCCEEEECCCSSSCCEEEEETTTEEEEEEEET---------------------------------TEEEEEEE
T ss_pred             eeecccCcceeEEEEECCCCCeEEEEECCCcEEEEecCC---------------------------------CCCcccee
Confidence            457889999999999999999999999999999997632                                 13455667


Q ss_pred             cccCCcceEEEEEeCC--CCEEEeecCCCeEEEEECCCCe--eeeeeecCCCCeeeEEEccC--CCEEEEEeCCCeEEEE
Q 042146           96 LIGHTNYVFCINFNPQ--SNRIVSDTFNETIRIWDIKTGK--CLKVLPAHSDPVTAIDFNRD--GTMIVTSSYDGLYRIL  169 (262)
Q Consensus        96 ~~~~~~~v~~~~~~~~--~~~l~~~~~dg~i~vwd~~~~~--~~~~~~~~~~~v~~~~~~~~--~~~l~~~~~dg~i~~~  169 (262)
                      +.+|...|.+++|+|+  ++++++|+.||.|++||+++++  .+..+..|..+|.+++|+|+  ++.+++++.||.|++|
T Consensus        49 l~~h~~~V~~l~~s~~~~~~~l~s~s~Dg~I~vwd~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~l~sgs~dg~I~vw  128 (753)
T 3jro_A           49 LTGHEGPVWRVDWAHPKFGTILASCSYDGKVLIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVV  128 (753)
T ss_dssp             ECCCSSCEEEEEECCTTSCSEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEE
T ss_pred             ccCCcCceEEEEecCCCCCCEEEEEeCCCeEEEEECCCCcccccccccCCCCCeEEEEECCCCCCCEEEEEeCCCcEEEE
Confidence            7889999999999987  9999999999999999999886  67778889999999999998  9999999999999999


Q ss_pred             eCCC----------------------C-------------CccEEEEEcCCCeEEEEecCCCc----eeeEEeccCCcee
Q 042146          170 DAST----------------------P-------------NGKFILVGTLDNTLRLWNYSTRK----ILKTYSGYTNSKY  210 (262)
Q Consensus       170 d~~~----------------------~-------------~~~~l~~~~~dg~i~i~d~~~~~----~~~~~~~~~~~~~  210 (262)
                      |++.                      |             ++.++++|+.||.|++||++++.    +...+.+      
T Consensus       129 dl~~~~~~~~~~~~~~~~~v~~l~~~p~~~~~~~~~~~~~d~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~------  202 (753)
T 3jro_A          129 EFKENGTTSPIIIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEG------  202 (753)
T ss_dssp             ECCSSSCCCCEEEECCSSCEEEEEECCCC---------CGGGCCEEEEETTSCEEEEEEETTTTEEEEEEEECC------
T ss_pred             EeecCCCcceeEeecCCCceEEEEecCcccccccccccCCCCCEEEEEECCCeEEEEeccCCcccceeeeeecC------
Confidence            9876                      4             58899999999999999998773    3344444      


Q ss_pred             EEEEEEecCCCeeEEccccceEEEEEcCC---CCeEEEeeecCCCcEEEEeecc
Q 042146          211 CISSTFSVTNGKYIVSHRDPVISVASHPA---KNIIASGALDNDRTMKIWTQEK  261 (262)
Q Consensus       211 ~~~~~~~~~~~~~~~~~~~~v~~~~~~p~---~~~l~~~~~d~d~~i~iw~~~~  261 (262)
                                      |..+|.+++|+|+   +.+|++++  .||.|++|++..
T Consensus       203 ----------------h~~~V~~l~~sp~~~~~~~l~s~s--~Dg~I~iwd~~~  238 (753)
T 3jro_A          203 ----------------HSDWVRDVAWSPTVLLRSYLASVS--QDRTCIIWTQDN  238 (753)
T ss_dssp             ----------------CSSCEEEEEECCCCSSSEEEEEEE--SSSCEEEEEESS
T ss_pred             ----------------CCCcEEEEEeccCCCCCCEEEEEe--cCCEEEEecCCC
Confidence                            8899999999999   89999999  899999999864

>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}

Probab=100.00  E-value=8.4e-33  Score=216.37  Aligned_cols=189  Identities=20%  Similarity=0.241  Sum_probs=149.2

Q ss_pred             CCCCceeeecc--ccc----ceecccCcCceEEEEEccCCCeEEEecCCCeEEEeecCCCCCCCCCCCCCCccccCCccc
Q 042146            2 SSDRSLESFRP--YTL----TQTLNGHLRAVSYVKFSHDGRLLTSSSAEKTLLTYSLSSISNFDSTPPSPLQKFTGHEQG   75 (262)
Q Consensus         2 s~d~~i~~~~~--~~~----~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~   75 (262)
                      +.||+|+.|+.  .+.    ...+.+|.+.|++++|+|++++|++|+.|++|++||+++....        ..+.+|...
T Consensus       100 s~dg~v~lWd~~~~~~~~~~~~~~~~H~~~V~~v~~spdg~~l~sgs~d~~i~iwd~~~~~~~--------~~~~~h~~~  171 (344)
T 4gqb_B          100 SDSGAVELWELDENETLIVSKFCKYEHDDIVSTVSVLSSGTQAVSGSKDICIKVWDLAQQVVL--------SSYRAHAAQ  171 (344)
T ss_dssp             ETTSEEEEEEECTTSSCEEEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEE--------EEECCCSSC
T ss_pred             ECCCEEEEEeccCCCceeEeeccccCCCCCEEEEEECCCCCEEEEEeCCCeEEEEECCCCcEE--------EEEcCcCCc
Confidence            46899888863  332    2345589999999999999999999999999999998764322        222222222


Q ss_pred             cc----------------cceeEEEEecCCCccceecc--cCCcceEEEEEeC-CCCEEEeecCCCeEEEEECCCCeeee
Q 042146           76 IS----------------DLATIRLWDVPTATSLKTLI--GHTNYVFCINFNP-QSNRIVSDTFNETIRIWDIKTGKCLK  136 (262)
Q Consensus        76 v~----------------~~~~i~v~d~~~~~~~~~~~--~~~~~v~~~~~~~-~~~~l~~~~~dg~i~vwd~~~~~~~~  136 (262)
                      +.                ..+.|++||+++++....+.  .+...+.+++|+| +++++++|+.||.|++||+++++++.
T Consensus       172 V~~~~~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~l~sg~~dg~v~~wd~~~~~~~~  251 (344)
T 4gqb_B          172 VTCVAASPHKDSVFLSCSEDNRILLWDTRCPKPASQIGCSAPGYLPTSLAWHPQQSEVFVFGDENGTVSLVDTKSTSCVL  251 (344)
T ss_dssp             EEEEEECSSCTTEEEEEETTSCEEEEETTSSSCEEECC----CCCEEEEEECSSCTTEEEEEETTSEEEEEESCC--CCE
T ss_pred             eEEEEecCCCCCceeeeccccccccccccccceeeeeecceeeccceeeeecCCCCcceEEeccCCcEEEEECCCCcEEE
Confidence            21                23389999999998887764  4556799999999 56788999999999999999999999


Q ss_pred             eeecCCCCeeeEEEccCC-CEEEEEeCCCeEEEEeCCC-------------------CCcc-EEEEEcCCCeEEEEecCC
Q 042146          137 VLPAHSDPVTAIDFNRDG-TMIVTSSYDGLYRILDAST-------------------PNGK-FILVGTLDNTLRLWNYST  195 (262)
Q Consensus       137 ~~~~~~~~v~~~~~~~~~-~~l~~~~~dg~i~~~d~~~-------------------~~~~-~l~~~~~dg~i~i~d~~~  195 (262)
                      .+.+|...|++++|+|++ ++|++|+.|++|++||++.                   |+++ +|++++.|+.|++|++.+
T Consensus       252 ~~~~h~~~v~~v~fsp~g~~~lasgs~D~~i~vwd~~~~~~~~~~~H~~~V~~v~~sp~~~~llas~s~D~~v~~w~v~~  331 (344)
T 4gqb_B          252 SSAVHSQCVTGLVFSPHSVPFLASLSEDCSLAVLDSSLSELFRSQAHRDFVRDATWSPLNHSLLTTVGWDHQVVHHVVPT  331 (344)
T ss_dssp             EEECCSSCEEEEEECSSSSCCEEEEETTSCEEEECTTCCEEEEECCCSSCEEEEEECSSSTTEEEEEETTSCEEEEECCC
T ss_pred             EEcCCCCCEEEEEEccCCCeEEEEEeCCCeEEEEECCCCcEEEEcCCCCCEEEEEEeCCCCeEEEEEcCCCeEEEEECCC
Confidence            999999999999999988 5799999999999999886                   6665 577899999999999986


Q ss_pred             Cce
Q 042146          196 RKI  198 (262)
Q Consensus       196 ~~~  198 (262)
                      ...
T Consensus       332 ~~~  334 (344)
T 4gqb_B          332 EPL  334 (344)
T ss_dssp             ---
T ss_pred             CCC
Confidence            543

>3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens}

Probab=100.00  E-value=4.3e-32  Score=219.57  Aligned_cols=253  Identities=17%  Similarity=0.311  Sum_probs=180.5

Q ss_pred             CCCceeeeccc--c-----------cceecccCc------------CceEEEEEccCC--CeEEEecCCCeEEEeecCCC
Q 042146            3 SDRSLESFRPY--T-----------LTQTLNGHL------------RAVSYVKFSHDG--RLLTSSSAEKTLLTYSLSSI   55 (262)
Q Consensus         3 ~d~~i~~~~~~--~-----------~~~~~~~h~------------~~v~~~~~~~~~--~~l~s~~~d~~i~iw~~~~~   55 (262)
                      .||.|..|+..  +           +...+.+|.            ++|++++|+|++  .+|++++.|++|++|++...
T Consensus        48 ~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~V~~l~~~~~~~~~~l~s~s~d~~i~iw~~~~~  127 (447)
T 3dw8_B           48 KGGRVVIFQQEQENKIQSHSRGEYNVYSTFQSHEPEFDYLKSLEIEEKINKIRWLPQKNAAQFLLSTNDKTIKLWKISER  127 (447)
T ss_dssp             TTSEEEEEEECC-----CCCCCCEEEEEEEECCCCEEEGGGTEEECCCCCEEEECCCCSSSEEEEEECSSCEEEEEEEEE
T ss_pred             CCCeEEEEEecCCCCCCcccccceeEecccccccccccccccccccCceEEEEEcCCCCcceEEEeCCCCeEEEEecccc
Confidence            57888888632  2           477888998            889999999998  79999999999999998652


Q ss_pred             CCC----CCC----------CC--CCC---------------cc-ccCCcccccc--------------ceeEEEEecCC
Q 042146           56 SNF----DST----------PP--SPL---------------QK-FTGHEQGISD--------------LATIRLWDVPT   89 (262)
Q Consensus        56 ~~~----~~~----------~~--~~~---------------~~-~~~~~~~v~~--------------~~~i~v~d~~~   89 (262)
                      ...    ...          ..  ...               .. ..+|...+..              .+.|++||+++
T Consensus       128 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~d~~i~iwd~~~  207 (447)
T 3dw8_B          128 DKRPEGYNLKEEDGRYRDPTTVTTLRVPVFRPMDLMVEASPRRIFANAHTYHINSISINSDYETYLSADDLRINLWHLEI  207 (447)
T ss_dssp             EEEEECCSCC--------CCCCCSCCCCEEEEEEEEEEEEEEEEECSCCSSCCCEEEECTTSSEEEEECSSEEEEEETTE
T ss_pred             cCCcceecccCccccccCcccccceEeccccchheeeeccceEEeccCCCcceEEEEEcCCCCEEEEeCCCeEEEEECCC
Confidence            210    000          00  000               00 1223333322              33899999984


Q ss_pred             -Cccce-------ecccCCcceEEEEEeCCC-CEEEeecCCCeEEEEECCCCee----eeeeecCCC------------C
Q 042146           90 -ATSLK-------TLIGHTNYVFCINFNPQS-NRIVSDTFNETIRIWDIKTGKC----LKVLPAHSD------------P  144 (262)
Q Consensus        90 -~~~~~-------~~~~~~~~v~~~~~~~~~-~~l~~~~~dg~i~vwd~~~~~~----~~~~~~~~~------------~  144 (262)
                       ++.+.       .+.+|...|.+++|+|++ ++|++|+.||.|++||+++++.    +..+..|..            .
T Consensus       208 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  287 (447)
T 3dw8_B          208 TDRSFNIVDIKPANMEELTEVITAAEFHPNSCNTFVYSSSKGTIRLCDMRASALCDRHSKLFEEPEDPSNRSFFSEIISS  287 (447)
T ss_dssp             EEEEEEEEECCCSSGGGCCCCEEEEEECSSCTTEEEEEETTSCEEEEETTTCSSSCTTCEEECCC-----CCHHHHHTTC
T ss_pred             CCceeeeeecccccccccCcceEEEEECCCCCcEEEEEeCCCeEEEEECcCCccccceeeEeccCCCccccccccccCce
Confidence             33333       366899999999999998 9999999999999999998886    677877776            8


Q ss_pred             eeeEEEccCCCEEEEEeCCCeEEEEeCCC------------------------------------CCccEEEEEcCCCeE
Q 042146          145 VTAIDFNRDGTMIVTSSYDGLYRILDAST------------------------------------PNGKFILVGTLDNTL  188 (262)
Q Consensus       145 v~~~~~~~~~~~l~~~~~dg~i~~~d~~~------------------------------------~~~~~l~~~~~dg~i  188 (262)
                      |.+++|+|++++|++++. +.|++||++.                                    |++++|++|+.||.|
T Consensus       288 v~~~~~s~~g~~l~~~~~-~~v~iwd~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~~~~~~~~s~~~~~l~s~s~dg~v  366 (447)
T 3dw8_B          288 ISDVKFSHSGRYMMTRDY-LSVKVWDLNMENRPVETYQVHEYLRSKLCSLYENDCIFDKFECCWNGSDSVVMTGSYNNFF  366 (447)
T ss_dssp             EEEEEECTTSSEEEEEES-SEEEEEETTCCSSCSCCEESCGGGTTTHHHHHHTSGGGCCCCEEECTTSSEEEEECSTTEE
T ss_pred             EEEEEECCCCCEEEEeeC-CeEEEEeCCCCccccceeeccccccccccccccccccccceEEEECCCCCEEEEeccCCEE
Confidence            999999999999999999 9999999874                                    467899999999999


Q ss_pred             EEEecCCCceeeEEeccCCceeEEE------EEEec-CC-Cee---EEccccceEEEEEcCCCCeEEEeeecCCCcEEEE
Q 042146          189 RLWNYSTRKILKTYSGYTNSKYCIS------STFSV-TN-GKY---IVSHRDPVISVASHPAKNIIASGALDNDRTMKIW  257 (262)
Q Consensus       189 ~i~d~~~~~~~~~~~~~~~~~~~~~------~~~~~-~~-~~~---~~~~~~~v~~~~~~p~~~~l~~~~~d~d~~i~iw  257 (262)
                      ++||+.+++.+ .+..+........      ..... .. ...   ...+...|..++|+|++++||+++  .+ .+++|
T Consensus       367 ~iwd~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~~la~~~--~~-~~~~~  442 (447)
T 3dw8_B          367 RMFDRNTKRDI-TLEASRENNKPRTVLKPRKVCASGKRKKDEISVDSLDFNKKILHTAWHPKENIIAVAT--TN-NLYIF  442 (447)
T ss_dssp             EEEETTTCCEE-EEECCSTTCCTTCBCCCCCEECSSCCCTTCEEGGGCCTTSCCCEEEECSSSSEEEEEC--SS-CEEEE
T ss_pred             EEEEcCCCcce-eeeecccccccccccCCccccccCCcccccccccccccCCceeEEEECCCCCEEEEEe--cc-eeeee
Confidence            99999998776 3333321110000      00000 00 000   011456899999999999999997  44 58888


Q ss_pred             eec
Q 042146          258 TQE  260 (262)
Q Consensus       258 ~~~  260 (262)
                      .-+
T Consensus       443 ~~~  445 (447)
T 3dw8_B          443 QDK  445 (447)
T ss_dssp             ECC
T ss_pred             ccc
Confidence            754

>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae}

Probab=100.00  E-value=2.1e-32  Score=214.39  Aligned_cols=210  Identities=13%  Similarity=0.140  Sum_probs=148.2

Q ss_pred             EEccCCCeEEEecCCCeEEEeecCCCCCCCCCCCCCCccccCCcc--ccccceeEEEE---------ecCCCccceecc-
Q 042146           30 KFSHDGRLLTSSSAEKTLLTYSLSSISNFDSTPPSPLQKFTGHEQ--GISDLATIRLW---------DVPTATSLKTLI-   97 (262)
Q Consensus        30 ~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~--~v~~~~~i~v~---------d~~~~~~~~~~~-   97 (262)
                      .+.+++.+|++|+.||+|++||++............+..+..+..  .....+.|++|         +..+++.+..+. 
T Consensus        43 ~~~~d~~~l~sg~~Dg~v~iwd~~~~~~~~~~~~~~v~~~~~~~~~~s~s~D~~i~~w~~~~~~~~~~~~~~~~~~~~~~  122 (343)
T 3lrv_A           43 SMYYDKWVCMCRCEDGALHFTQLKDSKTITTITTPNPRTGGEHPAIISRGPCNRLLLLYPGNQITILDSKTNKVLREIEV  122 (343)
T ss_dssp             SSSEEEEEEEEEEETTEEEEEEESSSSCEEEEEEECCCTTCCCCSEEEECSTTEEEEEETTTEEEEEETTTCCEEEEEEC
T ss_pred             hhcCCCCEEEEECCCCcEEEEECCCCcEEEEEecCCceeeeeCCceEEecCCCeEEEEEccCceEEeecCCcceeEEeec
Confidence            344566677777777777777766533211111111111111111  00112255555         555555454443 


Q ss_pred             cCCcceEEEEEeC--CCCEEEeecCCCeEEEEECCCCeeeeeee-cCCCCeeeEEEccCCCEEEEEeCCCeEEEEeCCC-
Q 042146           98 GHTNYVFCINFNP--QSNRIVSDTFNETIRIWDIKTGKCLKVLP-AHSDPVTAIDFNRDGTMIVTSSYDGLYRILDAST-  173 (262)
Q Consensus        98 ~~~~~v~~~~~~~--~~~~l~~~~~dg~i~vwd~~~~~~~~~~~-~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~d~~~-  173 (262)
                      .|...|.+++|+|  +++++++++.||.|++||+++++.+.... .|...+.+++|+|++.+|++|+.||.|++||+++ 
T Consensus       123 ~~~~~v~~~~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~~i~~~~~~pdg~~lasg~~dg~i~iwd~~~~  202 (343)
T 3lrv_A          123 DSANEIIYMYGHNEVNTEYFIWADNRGTIGFQSYEDDSQYIVHSAKSDVEYSSGVLHKDSLLLALYSPDGILDVYNLSSP  202 (343)
T ss_dssp             CCSSCEEEEECCC---CCEEEEEETTCCEEEEESSSSCEEEEECCCSSCCCCEEEECTTSCEEEEECTTSCEEEEESSCT
T ss_pred             CCCCCEEEEEcCCCCCCCEEEEEeCCCcEEEEECCCCcEEEEEecCCCCceEEEEECCCCCEEEEEcCCCEEEEEECCCC
Confidence            6778899999999  99999999999999999999998876653 3556899999999999999999999999999876 


Q ss_pred             ---------------------CCccEEEEEcCCCeEEEEecCCCceeeEEeccCCceeEEEEEEecCCCeeEEccccce-
Q 042146          174 ---------------------PNGKFILVGTLDNTLRLWNYSTRKILKTYSGYTNSKYCISSTFSVTNGKYIVSHRDPV-  231 (262)
Q Consensus       174 ---------------------~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v-  231 (262)
                                           |++.+|++++ ++.|++||+++++.+..+..+..                   |...+ 
T Consensus       203 ~~~~~~~~~~h~~~v~~l~fs~~g~~l~s~~-~~~v~iwd~~~~~~~~~~~~~~~-------------------~~~~~~  262 (343)
T 3lrv_A          203 DQASSRFPVDEEAKIKEVKFADNGYWMVVEC-DQTVVCFDLRKDVGTLAYPTYTI-------------------PEFKTG  262 (343)
T ss_dssp             TSCCEECCCCTTSCEEEEEECTTSSEEEEEE-SSBEEEEETTSSTTCBSSCCCBC------------------------C
T ss_pred             CCCccEEeccCCCCEEEEEEeCCCCEEEEEe-CCeEEEEEcCCCCcceeeccccc-------------------cccccc
Confidence                                 7889999999 55999999999887665553221                   22222 


Q ss_pred             -EEEEEcCCCCeEEEeeecC-CCcEEEEeecc
Q 042146          232 -ISVASHPAKNIIASGALDN-DRTMKIWTQEK  261 (262)
Q Consensus       232 -~~~~~~p~~~~l~~~~~d~-d~~i~iw~~~~  261 (262)
                       .+++|+|++++|++++  . |+.|++|++++
T Consensus       263 ~~~~~~~~~g~~l~~~s--~~d~~i~v~~~~~  292 (343)
T 3lrv_A          263 TVTYDIDDSGKNMIAYS--NESNSLTIYKFDK  292 (343)
T ss_dssp             CEEEEECTTSSEEEEEE--TTTTEEEEEEECT
T ss_pred             ceEEEECCCCCEEEEec--CCCCcEEEEEEcc
Confidence             5799999999999988  6 89999999853

>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R*

Probab=100.00  E-value=3e-31  Score=205.80  Aligned_cols=218  Identities=21%  Similarity=0.390  Sum_probs=175.5

Q ss_pred             CCCCceeeecc-------cccceecccCcCceEEEEEccCCCeEEEecCCCeEEEeecCCCCCCCCCCCCCCccccCCcc
Q 042146            2 SSDRSLESFRP-------YTLTQTLNGHLRAVSYVKFSHDGRLLTSSSAEKTLLTYSLSSISNFDSTPPSPLQKFTGHEQ   74 (262)
Q Consensus         2 s~d~~i~~~~~-------~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~   74 (262)
                      +.|++++.|+.       ..++..+++|...|.+++|+|++++|++|+.|++|++||+....        ....+.+|..
T Consensus        37 s~D~~v~~W~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~s~s~D~~v~~wd~~~~~--------~~~~~~~h~~  108 (319)
T 3frx_A           37 SRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDCTLTADGAYALSASWDKTLRLWDVATGE--------TYQRFVGHKS  108 (319)
T ss_dssp             ETTSEEEEEEEEEETTEEEEEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTE--------EEEEEECCSS
T ss_pred             cCCccEEEecCCCCCccccccceEEeCCcccEEEEEECCCCCEEEEEeCCCEEEEEECCCCC--------eeEEEccCCC
Confidence            46899998863       23567889999999999999999999999999999999987543        2233444444


Q ss_pred             ccccc---------------eeEEEEecCCCccceecccCCcceEEEEEeCC------CCEEEeecCCCeEEEEECCCCe
Q 042146           75 GISDL---------------ATIRLWDVPTATSLKTLIGHTNYVFCINFNPQ------SNRIVSDTFNETIRIWDIKTGK  133 (262)
Q Consensus        75 ~v~~~---------------~~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~------~~~l~~~~~dg~i~vwd~~~~~  133 (262)
                      .+..+               +.|++||++ ++.+..+.+|...|.++++.|.      +..+++++.|+.|++||+++.+
T Consensus       109 ~v~~~~~~~~~~~l~s~s~D~~i~vwd~~-~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~  187 (319)
T 3frx_A          109 DVMSVDIDKKASMIISGSRDKTIKVWTIK-GQCLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQFQ  187 (319)
T ss_dssp             CEEEEEECTTSCEEEEEETTSCEEEEETT-SCEEEEECCCSSCEEEEEECCC------CCEEEEEETTSCEEEEETTTTE
T ss_pred             cEEEEEEcCCCCEEEEEeCCCeEEEEECC-CCeEEEEeccCCcEEEEEEccCCCCCCCccEEEEEeCCCEEEEEECCcch
Confidence            44332               289999995 5677788899999999999984      4489999999999999999999


Q ss_pred             eeeeeecCCCCeeeEEEccCCCEEEEEeCCCeEEEEeCCC-------------------CCccEEEEEcCCCeEEEEecC
Q 042146          134 CLKVLPAHSDPVTAIDFNRDGTMIVTSSYDGLYRILDAST-------------------PNGKFILVGTLDNTLRLWNYS  194 (262)
Q Consensus       134 ~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~d~~~-------------------~~~~~l~~~~~dg~i~i~d~~  194 (262)
                      ....+.+|...|.+++|+|++++|++++.||.|++||++.                   |++.+|++++.+ .+++|++.
T Consensus       188 ~~~~~~~h~~~v~~~~~sp~g~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~v~~~~~sp~~~~la~~~~~-~i~v~~~~  266 (319)
T 3frx_A          188 IEADFIGHNSNINTLTASPDGTLIASAGKDGEIMLWNLAAKKAMYTLSAQDEVFSLAFSPNRYWLAAATAT-GIKVFSLD  266 (319)
T ss_dssp             EEEEECCCCSCEEEEEECTTSSEEEEEETTCEEEEEETTTTEEEEEEECCSCEEEEEECSSSSEEEEEETT-EEEEEEET
T ss_pred             hheeecCCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEecCCCcEEEEEEcCCCCEEEEEcCC-CcEEEEeC
Confidence            9999999999999999999999999999999999999876                   788888888754 59999999


Q ss_pred             CCceeeEEeccCC------ceeEEEEEEecCCCeeEEcccc
Q 042146          195 TRKILKTYSGYTN------SKYCISSTFSVTNGKYIVSHRD  229 (262)
Q Consensus       195 ~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~  229 (262)
                      .+..+..+..+..      ......++|++....++.+..+
T Consensus       267 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~sg~~D  307 (319)
T 3frx_A          267 PQYLVDDLRPEFAGYSKAAEPHAVSLAWSADGQTLFAGYTD  307 (319)
T ss_dssp             TEEEEEEECCCCTTCCGGGCCCEEEEEECTTSSEEEEEETT
T ss_pred             cCeeeeccCccccccccCcCcceeEEEECCCCCEEEEeecC
Confidence            8877777654321      2234567777776666665433

>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*

Probab=100.00  E-value=6.3e-31  Score=212.92  Aligned_cols=231  Identities=28%  Similarity=0.567  Sum_probs=186.2

Q ss_pred             ccceecccCcCceEEEEEccCCCeEEEecCCCeEEEeecCCCCCCCCCCCCCCccccCCcccccc-------------ce
Q 042146           14 TLTQTLNGHLRAVSYVKFSHDGRLLTSSSAEKTLLTYSLSSISNFDSTPPSPLQKFTGHEQGISD-------------LA   80 (262)
Q Consensus        14 ~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~-------------~~   80 (262)
                      +..+.+.+|.+.|.. ++++++++|++|+.||+|++||+.+...        ...+.+|...+..             .+
T Consensus       109 ~~~~~l~~h~~~v~~-~~~~~g~~l~sg~~dg~i~vwd~~~~~~--------~~~~~~h~~~v~~~~~~~~~l~s~~~dg  179 (445)
T 2ovr_B          109 KSPKVLKGHDDHVIT-CLQFCGNRIVSGSDDNTLKVWSAVTGKC--------LRTLVGHTGGVWSSQMRDNIIISGSTDR  179 (445)
T ss_dssp             CCCEEEECSTTSCEE-EEEEETTEEEEEETTSCEEEEETTTCCE--------EEECCCCSSCEEEEEEETTEEEEEETTS
T ss_pred             ceeEEecccCCCcEE-EEEEcCCEEEEEECCCcEEEEECCCCcE--------EEEEcCCCCCEEEEEecCCEEEEEeCCC
Confidence            356778899987533 2555789999999999999999865432        2233344443322             22


Q ss_pred             eEEEEecCCCccceecccCCcceEEEEEeCCCCEEEeecCCCeEEEEECCCCeeeeeeecCCCCeeeEEEccCCCEEEEE
Q 042146           81 TIRLWDVPTATSLKTLIGHTNYVFCINFNPQSNRIVSDTFNETIRIWDIKTGKCLKVLPAHSDPVTAIDFNRDGTMIVTS  160 (262)
Q Consensus        81 ~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~  160 (262)
                      .|++||+.+++.+..+.+|...|.+++++  ++.+++|+.||.|++||+++++.+..+..|...|.+++|  ++++++++
T Consensus       180 ~i~vwd~~~~~~~~~~~~h~~~v~~~~~~--~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~--~~~~l~~~  255 (445)
T 2ovr_B          180 TLKVWNAETGECIHTLYGHTSTVRCMHLH--EKRVVSGSRDATLRVWDIETGQCLHVLMGHVAAVRCVQY--DGRRVVSG  255 (445)
T ss_dssp             CEEEEETTTTEEEEEECCCSSCEEEEEEE--TTEEEEEETTSEEEEEESSSCCEEEEEECCSSCEEEEEE--CSSCEEEE
T ss_pred             eEEEEECCcCcEEEEECCCCCcEEEEEec--CCEEEEEeCCCEEEEEECCCCcEEEEEcCCcccEEEEEE--CCCEEEEE
Confidence            89999999999999999999999999996  678999999999999999999999999999999999999  68899999


Q ss_pred             eCCCeEEEEeCCC------------------CCccEEEEEcCCCeEEEEecCCCceeeEEeccCCceeEEEEE-------
Q 042146          161 SYDGLYRILDAST------------------PNGKFILVGTLDNTLRLWNYSTRKILKTYSGYTNSKYCISST-------  215 (262)
Q Consensus       161 ~~dg~i~~~d~~~------------------~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~-------  215 (262)
                      +.||.|++||++.                  .++.++++|+.||.|++||+++++++..+.++...+.++...       
T Consensus       256 ~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~l~~~  335 (445)
T 2ovr_B          256 AYDFMVKVWDPETETCLHTLQGHTNRVYSLQFDGIHVVSGSLDTSIRVWDVETGNCIHTLTGHQSLTSGMELKDNILVSG  335 (445)
T ss_dssp             ETTSCEEEEEGGGTEEEEEECCCSSCEEEEEECSSEEEEEETTSCEEEEETTTCCEEEEECCCCSCEEEEEEETTEEEEE
T ss_pred             cCCCEEEEEECCCCcEeEEecCCCCceEEEEECCCEEEEEeCCCeEEEEECCCCCEEEEEcCCcccEEEEEEeCCEEEEE
Confidence            9999999999875                  478899999999999999999999999998887766655421       


Q ss_pred             --------EecCCCeeE---Ec---cccceEEEEEcCCCCeEEEeeecCCCcEEEEeecc
Q 042146          216 --------FSVTNGKYI---VS---HRDPVISVASHPAKNIIASGALDNDRTMKIWTQEK  261 (262)
Q Consensus       216 --------~~~~~~~~~---~~---~~~~v~~~~~~p~~~~l~~~~~d~d~~i~iw~~~~  261 (262)
                              +....+..+   .+   |...|.+++|+  +++|++++  .||.|++|++..
T Consensus       336 ~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~l~s~~--~dg~v~iwd~~~  391 (445)
T 2ovr_B          336 NADSTVKIWDIKTGQCLQTLQGPNKHQSAVTCLQFN--KNFVITSS--DDGTVKLWDLKT  391 (445)
T ss_dssp             ETTSCEEEEETTTCCEEEEECSTTSCSSCEEEEEEC--SSEEEEEE--TTSEEEEEETTT
T ss_pred             eCCCeEEEEECCCCcEEEEEccCCCCCCCEEEEEEC--CCEEEEEe--CCCeEEEEECCC
Confidence                    111111111   11   67789999996  58999999  899999999864

>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X

Probab=100.00  E-value=1e-31  Score=214.23  Aligned_cols=234  Identities=17%  Similarity=0.218  Sum_probs=178.4

Q ss_pred             ccceecccCcCceEEEEEccCCCeEEEecCCCeEEEeecCCCCCCC------C--CCCCCCccccCC------c---ccc
Q 042146           14 TLTQTLNGHLRAVSYVKFSHDGRLLTSSSAEKTLLTYSLSSISNFD------S--TPPSPLQKFTGH------E---QGI   76 (262)
Q Consensus        14 ~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~------~--~~~~~~~~~~~~------~---~~v   76 (262)
                      ...+.+.+|.++|++++|+|  ++|++|+.||.|++|+++......      .  .....+..+...      .   ..+
T Consensus         7 ~~~~~~~~h~~~i~~~~~~~--~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~g~~~~~l   84 (397)
T 1sq9_A            7 ATANAGKAHDADIFSVSACN--SFTVSCSGDGYLKVWDNKLLDNENPKDKSYSHFVHKSGLHHVDVLQAIERDAFELCLV   84 (397)
T ss_dssp             EEEEESSCSSSCEEEEEECS--SEEEEEETTSEEEEEESBCCTTCCGGGGEEEEECCTTCEEEEEEEEEEETTTEEEEEE
T ss_pred             hhhhhhhhhhcCeEEEEecC--CeEEEEcCCCEEEEEECCCcccccCCCcceEEecCCCcEEEEEEecccccCCccccEE
Confidence            45677889999999999999  799999999999999997654110      0  001111111111      1   111


Q ss_pred             ---ccceeEEEEecCCCcc-----ceecccC-----CcceEEEEEe----CCCCE-EEeecCCCeEEEEECCC------C
Q 042146           77 ---SDLATIRLWDVPTATS-----LKTLIGH-----TNYVFCINFN----PQSNR-IVSDTFNETIRIWDIKT------G  132 (262)
Q Consensus        77 ---~~~~~i~v~d~~~~~~-----~~~~~~~-----~~~v~~~~~~----~~~~~-l~~~~~dg~i~vwd~~~------~  132 (262)
                         ...+.|++||+.+++.     +..+..|     ...|.+++|+    |++++ |++++.||.|++||+++      +
T Consensus        85 ~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~  164 (397)
T 1sq9_A           85 ATTSFSGDLLFYRITREDETKKVIFEKLDLLDSDMKKHSFWALKWGASNDRLLSHRLVATDVKGTTYIWKFHPFADESNS  164 (397)
T ss_dssp             EEEETTSCEEEEEEEECTTTCCEEEEEECCSCTTGGGSCEEEEEEECCC----CEEEEEEETTSCEEEEEEESSSSHHHH
T ss_pred             EEEcCCCCEEEEEccCCcccccccceeecccccccCCCcEEEEEEeeccCCCCceEEEEEeCCCcEEEEeCCcccccccc
Confidence               1233899999998887     7888888     5899999999    99999 99999999999999998      6


Q ss_pred             eeee-----ee-------ecCCCCeeeEEEccCCCEEEEEeCCCeEEEEeCCC--------------------------C
Q 042146          133 KCLK-----VL-------PAHSDPVTAIDFNRDGTMIVTSSYDGLYRILDAST--------------------------P  174 (262)
Q Consensus       133 ~~~~-----~~-------~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~d~~~--------------------------~  174 (262)
                      +.+.     .+       ..|...|.+++|+|++ +|++++.||.|++||++.                          +
T Consensus       165 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~h~~~~~~i~~i~~~~  243 (397)
T 1sq9_A          165 LTLNWSPTLELQGTVESPMTPSQFATSVDISERG-LIATGFNNGTVQISELSTLRPLYNFESQHSMINNSNSIRSVKFSP  243 (397)
T ss_dssp             TTTCCCCEEEEEEEECCSSSSCCCCCEEEECTTS-EEEEECTTSEEEEEETTTTEEEEEEECCC---CCCCCEEEEEECS
T ss_pred             ceeeccCcceeeeeeccccCCCCCceEEEECCCc-eEEEEeCCCcEEEEECCCCceeEEEeccccccccCCccceEEECC
Confidence            6665     66       4488999999999999 999999999999999763                          5


Q ss_pred             CccEEEEEcCC---CeEEEEecCCCceeeEEeccCCceeEEEEEEecCCCeeEEccccceEEEEEcCCCCeEEEeeecCC
Q 042146          175 NGKFILVGTLD---NTLRLWNYSTRKILKTYSGYTNSKYCISSTFSVTNGKYIVSHRDPVISVASHPAKNIIASGALDND  251 (262)
Q Consensus       175 ~~~~l~~~~~d---g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~d~d  251 (262)
                      ++++|++++.|   |.|++||+++++++..+............         ...|...|.+++|+|++++|++++  .|
T Consensus       244 ~~~~l~~~~~d~~~g~i~i~d~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~v~~~~~~~~~~~l~~~~--~d  312 (397)
T 1sq9_A          244 QGSLLAIAHDSNSFGCITLYETEFGERIGSLSVPTHSSQASLG---------EFAHSSWVMSLSFNDSGETLCSAG--WD  312 (397)
T ss_dssp             STTEEEEEEEETTEEEEEEEETTTCCEEEEECBC--------C---------CBSBSSCEEEEEECSSSSEEEEEE--TT
T ss_pred             CCCEEEEEecCCCCceEEEEECCCCcccceeccCccccccccc---------ccccCCcEEEEEECCCCCEEEEEe--CC
Confidence            68899999999   99999999999888887652110000000         001778999999999999999999  89


Q ss_pred             CcEEEEeecc
Q 042146          252 RTMKIWTQEK  261 (262)
Q Consensus       252 ~~i~iw~~~~  261 (262)
                      |.|++|++..
T Consensus       313 g~i~iwd~~~  322 (397)
T 1sq9_A          313 GKLRFWDVKT  322 (397)
T ss_dssp             SEEEEEETTT
T ss_pred             CeEEEEEcCC
Confidence            9999999864

>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A

Probab=100.00  E-value=1.9e-31  Score=223.77  Aligned_cols=255  Identities=16%  Similarity=0.218  Sum_probs=201.4

Q ss_pred             CCCceeeecc----------cccceecccCcCceEEEEEccCCCeEEEecCC----CeEEEeecCCCCCCCCCCCCCCcc
Q 042146            3 SDRSLESFRP----------YTLTQTLNGHLRAVSYVKFSHDGRLLTSSSAE----KTLLTYSLSSISNFDSTPPSPLQK   68 (262)
Q Consensus         3 ~d~~i~~~~~----------~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d----~~i~iw~~~~~~~~~~~~~~~~~~   68 (262)
                      .|+++..|+.          .+....+..|..+|.+++|+|++++|++++.+    +.|++||.......-......+..
T Consensus        86 ~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~v~~  165 (615)
T 1pgu_A           86 ESGKVIVWGWTFDKESNSVEVNVKSEFQVLAGPISDISWDFEGRRLCVVGEGRDNFGVFISWDSGNSLGEVSGHSQRINA  165 (615)
T ss_dssp             TTSEEEEEEEEEEGGGTEEEEEEEEEEECCSSCEEEEEECTTSSEEEEEECCSSCSEEEEETTTCCEEEECCSCSSCEEE
T ss_pred             CCCEEEEEeCCCCcccccccccccchhhcccccEEEEEEeCCCCEEEEeccCCCCccEEEEEECCCcceeeecCCccEEE
Confidence            5788888864          26777888999999999999999999999988    799999843211100111111111


Q ss_pred             ccCCccc---c---ccceeEEEEecCCCccceecccCCc---ceEEEEEeCC-CCEEEeecCCCeEEEEECCCCeeeeee
Q 042146           69 FTGHEQG---I---SDLATIRLWDVPTATSLKTLIGHTN---YVFCINFNPQ-SNRIVSDTFNETIRIWDIKTGKCLKVL  138 (262)
Q Consensus        69 ~~~~~~~---v---~~~~~i~v~d~~~~~~~~~~~~~~~---~v~~~~~~~~-~~~l~~~~~dg~i~vwd~~~~~~~~~~  138 (262)
                      +......   +   ...+.|++||+.+++.+..+..|..   .|.+++|+|+ ++++++++.||.|++||+++++.+..+
T Consensus       166 ~~~~~~~~~~l~~~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~  245 (615)
T 1pgu_A          166 CHLKQSRPMRSMTVGDDGSVVFYQGPPFKFSASDRTHHKQGSFVRDVEFSPDSGEFVITVGSDRKISCFDGKSGEFLKYI  245 (615)
T ss_dssp             EEECSSSSCEEEEEETTTEEEEEETTTBEEEEEECSSSCTTCCEEEEEECSTTCCEEEEEETTCCEEEEETTTCCEEEEC
T ss_pred             EEECCCCCcEEEEEeCCCcEEEEeCCCcceeeeecccCCCCceEEEEEECCCCCCEEEEEeCCCeEEEEECCCCCEeEEe
Confidence            1111111   1   1223899999999999999999999   9999999999 999999999999999999999999888


Q ss_pred             -e---cCCCCeeeEEEccCCCEEEEEeCCCeEEEEeCCC-----------------------CCccEEEEEcCCCeEEEE
Q 042146          139 -P---AHSDPVTAIDFNRDGTMIVTSSYDGLYRILDAST-----------------------PNGKFILVGTLDNTLRLW  191 (262)
Q Consensus       139 -~---~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~d~~~-----------------------~~~~~l~~~~~dg~i~i~  191 (262)
                       .   .|..+|.+++|+ ++++|++++.|+.|++||++.                       ++++++++++.+|.|++|
T Consensus       246 ~~~~~~~~~~v~~~~~~-~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~i~~~  324 (615)
T 1pgu_A          246 EDDQEPVQGGIFALSWL-DSQKFATVGADATIRVWDVTTSKCVQKWTLDKQQLGNQQVGVVATGNGRIISLSLDGTLNFY  324 (615)
T ss_dssp             CBTTBCCCSCEEEEEES-SSSEEEEEETTSEEEEEETTTTEEEEEEECCTTCGGGCEEEEEEEETTEEEEEETTSCEEEE
T ss_pred             cccccccCCceEEEEEc-CCCEEEEEcCCCcEEEEECCCCcEEEEEcCCCCcccCceeEEEeCCCCeEEEEECCCCEEEE
Confidence             6   899999999999 999999999999999999886                       267899999999999999


Q ss_pred             ecCCCceeeEEeccCCceeEEEE---EEecCCCee--------EEccccceEEEEEcCCCCeEEEeeecCCCcEEEEeec
Q 042146          192 NYSTRKILKTYSGYTNSKYCISS---TFSVTNGKY--------IVSHRDPVISVASHPAKNIIASGALDNDRTMKIWTQE  260 (262)
Q Consensus       192 d~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~--------~~~~~~~v~~~~~~p~~~~l~~~~~d~d~~i~iw~~~  260 (262)
                      |+.+++++..+.+|...+.++..   .....++.+        ..+|...|.+++| +++..|++++  .|+.|++|++.
T Consensus       325 d~~~~~~~~~~~~~~~~v~~~~~~~l~~~~~dg~i~~w~~~~~~~~~~~~v~~~~~-~~~~~l~~~~--~d~~i~~~~~~  401 (615)
T 1pgu_A          325 ELGHDEVLKTISGHNKGITALTVNPLISGSYDGRIMEWSSSSMHQDHSNLIVSLDN-SKAQEYSSIS--WDDTLKVNGIT  401 (615)
T ss_dssp             ETTEEEEEEEECCCSSCEEEEETTTTEEEETTSCEEETTTTEEECCCCSCEEEEEC-CSTTCCEEEE--TTTEEEETTEE
T ss_pred             ECCCCcEEEEEeCCCCCEEEEEecCcEEECCCCeEEEEEchhhcCcccCceEEEEE-CCCcEEEEEe--CCCCEEEEEcc
Confidence            99999999999998887777654   000111111        1347889999999 6678888998  89999999986


Q ss_pred             c
Q 042146          261 K  261 (262)
Q Consensus       261 ~  261 (262)
                      .
T Consensus       402 ~  402 (615)
T 1pgu_A          402 K  402 (615)
T ss_dssp             E
T ss_pred             c
Confidence            4

>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A

Probab=100.00  E-value=4.1e-31  Score=221.78  Aligned_cols=234  Identities=18%  Similarity=0.233  Sum_probs=186.2

Q ss_pred             CCceeeec--cc----ccceecccCcCc-eEEEEEcc--CCCeEEEecCCCeEEEeecCCCCCCCCCCCCCCccccCCcc
Q 042146            4 DRSLESFR--PY----TLTQTLNGHLRA-VSYVKFSH--DGRLLTSSSAEKTLLTYSLSSISNFDSTPPSPLQKFTGHEQ   74 (262)
Q Consensus         4 d~~i~~~~--~~----~~~~~~~~h~~~-v~~~~~~~--~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~   74 (262)
                      |+.+..|+  ..    +....+.+|.+. |++++|+|  ++++|++++.||.|++||+................+..+..
T Consensus        38 ~~~v~v~~~~~~~~~~~~~~~~~~h~~~~v~~~~~sp~~~~~~l~s~~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~  117 (615)
T 1pgu_A           38 GKSAFVRCLDDGDSKVPPVVQFTGHGSSVVTTVKFSPIKGSQYLCSGDESGKVIVWGWTFDKESNSVEVNVKSEFQVLAG  117 (615)
T ss_dssp             TTEEEEEECCSSCCSSCSEEEECTTTTSCEEEEEECSSTTCCEEEEEETTSEEEEEEEEEEGGGTEEEEEEEEEEECCSS
T ss_pred             CCeEEEEECCCCCCccccceEEecCCCceEEEEEECcCCCCCEEEEecCCCEEEEEeCCCCcccccccccccchhhcccc
Confidence            55666665  44    678889999999 99999999  99999999999999999995320000000011111222222


Q ss_pred             ccccc-------------------eeEEEEecCCCccceecccCCcceEEEEEeCCCC-EEEeecCCCeEEEEECCCCee
Q 042146           75 GISDL-------------------ATIRLWDVPTATSLKTLIGHTNYVFCINFNPQSN-RIVSDTFNETIRIWDIKTGKC  134 (262)
Q Consensus        75 ~v~~~-------------------~~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~~~~~dg~i~vwd~~~~~~  134 (262)
                      .+..+                   ..|.+||  .++.+..+.+|...|.+++|+|+++ ++++++.|+.|++||+++++.
T Consensus       118 ~v~~~~~s~~~~~l~~~~~~~~~~~~v~~~d--~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~v~vwd~~~~~~  195 (615)
T 1pgu_A          118 PISDISWDFEGRRLCVVGEGRDNFGVFISWD--SGNSLGEVSGHSQRINACHLKQSRPMRSMTVGDDGSVVFYQGPPFKF  195 (615)
T ss_dssp             CEEEEEECTTSSEEEEEECCSSCSEEEEETT--TCCEEEECCSCSSCEEEEEECSSSSCEEEEEETTTEEEEEETTTBEE
T ss_pred             cEEEEEEeCCCCEEEEeccCCCCccEEEEEE--CCCcceeeecCCccEEEEEECCCCCcEEEEEeCCCcEEEEeCCCcce
Confidence            22111                   3567777  6778888999999999999999998 799999999999999999999


Q ss_pred             eeeeecCCC---CeeeEEEccC-CCEEEEEeCCCeEEEEeCCC-----------------------CCccEEEEEcCCCe
Q 042146          135 LKVLPAHSD---PVTAIDFNRD-GTMIVTSSYDGLYRILDAST-----------------------PNGKFILVGTLDNT  187 (262)
Q Consensus       135 ~~~~~~~~~---~v~~~~~~~~-~~~l~~~~~dg~i~~~d~~~-----------------------~~~~~l~~~~~dg~  187 (262)
                      +..+..|..   .|.+++|+|+ +++|++++.||.|++||++.                       .++++|++++.||.
T Consensus       196 ~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~l~~~~~d~~  275 (615)
T 1pgu_A          196 SASDRTHHKQGSFVRDVEFSPDSGEFVITVGSDRKISCFDGKSGEFLKYIEDDQEPVQGGIFALSWLDSQKFATVGADAT  275 (615)
T ss_dssp             EEEECSSSCTTCCEEEEEECSTTCCEEEEEETTCCEEEEETTTCCEEEECCBTTBCCCSCEEEEEESSSSEEEEEETTSE
T ss_pred             eeeecccCCCCceEEEEEECCCCCCEEEEEeCCCeEEEEECCCCCEeEEecccccccCCceEEEEEcCCCEEEEEcCCCc
Confidence            999999999   9999999999 99999999999999999764                       15778999999999


Q ss_pred             EEEEecCCCceeeEEeccCCceeEEEEEEecCCCeeEEccccceEEEEEcCCCCeEEEeeecCCCcEEEEeec
Q 042146          188 LRLWNYSTRKILKTYSGYTNSKYCISSTFSVTNGKYIVSHRDPVISVASHPAKNIIASGALDNDRTMKIWTQE  260 (262)
Q Consensus       188 i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~d~d~~i~iw~~~  260 (262)
                      |++||+++++.+..+..+...                  +...+.++.|. ++.++++++  .||.|++|++.
T Consensus       276 i~~wd~~~~~~~~~~~~~~~~------------------~~~~~~~~~~~-~~~~l~~~~--~~g~i~~~d~~  327 (615)
T 1pgu_A          276 IRVWDVTTSKCVQKWTLDKQQ------------------LGNQQVGVVAT-GNGRIISLS--LDGTLNFYELG  327 (615)
T ss_dssp             EEEEETTTTEEEEEEECCTTC------------------GGGCEEEEEEE-ETTEEEEEE--TTSCEEEEETT
T ss_pred             EEEEECCCCcEEEEEcCCCCc------------------ccCceeEEEeC-CCCeEEEEE--CCCCEEEEECC
Confidence            999999999999888764321                  35677788885 888888888  88999999875

>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A

Probab=100.00  E-value=2.3e-31  Score=230.15  Aligned_cols=226  Identities=24%  Similarity=0.392  Sum_probs=188.6

Q ss_pred             CCCceeeec--ccccceecccCcCceEEEEEccCCCeEEEecCCCeEEEeecCCCCCCCCCCCCCCccccCCccccc---
Q 042146            3 SDRSLESFR--PYTLTQTLNGHLRAVSYVKFSHDGRLLTSSSAEKTLLTYSLSSISNFDSTPPSPLQKFTGHEQGIS---   77 (262)
Q Consensus         3 ~d~~i~~~~--~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~---   77 (262)
                      .||+|..|+  ..+.+..+.+|.++|++++|+|++++|++++.||.|++||+.+...        ...+.+|...+.   
T Consensus        33 ~~g~v~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vw~~~~~~~--------~~~~~~~~~~v~~~~  104 (814)
T 3mkq_A           33 YSGRVEIWNYETQVEVRSIQVTETPVRAGKFIARKNWIIVGSDDFRIRVFNYNTGEK--------VVDFEAHPDYIRSIA  104 (814)
T ss_dssp             TTSEEEEEETTTTEEEEEEECCSSCEEEEEEEGGGTEEEEEETTSEEEEEETTTCCE--------EEEEECCSSCEEEEE
T ss_pred             CCCEEEEEECCCCceEEEEecCCCcEEEEEEeCCCCEEEEEeCCCeEEEEECCCCcE--------EEEEecCCCCEEEEE
Confidence            578888885  5668889999999999999999999999999999999999875432        122222222222   


Q ss_pred             ------------cceeEEEEecCCC-ccceecccCCcceEEEEEeC-CCCEEEeecCCCeEEEEECCCCeeeeeeecCC-
Q 042146           78 ------------DLATIRLWDVPTA-TSLKTLIGHTNYVFCINFNP-QSNRIVSDTFNETIRIWDIKTGKCLKVLPAHS-  142 (262)
Q Consensus        78 ------------~~~~i~v~d~~~~-~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~-  142 (262)
                                  ..+.|++||+.++ .....+.+|...|.+++|+| +++.+++++.||.|++||+++++....+..+. 
T Consensus       105 ~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~~~~  184 (814)
T 3mkq_A          105 VHPTKPYVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQE  184 (814)
T ss_dssp             ECSSSSEEEEEETTSEEEEEEGGGTSEEEEEEECCSSCEEEEEEETTEEEEEEEEETTSEEEEEETTCSSCSEEEECCCT
T ss_pred             EeCCCCEEEEEcCCCEEEEEECCCCceEEEEEcCCCCcEEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcceeEEecCCC
Confidence                        2238999999886 56677888999999999999 88999999999999999999888777776655 


Q ss_pred             CCeeeEEEcc--CCCEEEEEeCCCeEEEEeCCC--------------------CCccEEEEEcCCCeEEEEecCCCceee
Q 042146          143 DPVTAIDFNR--DGTMIVTSSYDGLYRILDAST--------------------PNGKFILVGTLDNTLRLWNYSTRKILK  200 (262)
Q Consensus       143 ~~v~~~~~~~--~~~~l~~~~~dg~i~~~d~~~--------------------~~~~~l~~~~~dg~i~i~d~~~~~~~~  200 (262)
                      ..+.+++|+|  ++.+|++++.||.|++||++.                    |+++++++++.||.|++||+.+++.+.
T Consensus       185 ~~v~~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~v~vwd~~~~~~~~  264 (814)
T 3mkq_A          185 RGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVFHPTLPIIISGSEDGTLKIWNSSTYKVEK  264 (814)
T ss_dssp             TCCCEEEECCSTTCCEEEEECTTSEEEEEETTTTEEEEEEECCSSCEEEEEECSSSSEEEEEETTSCEEEEETTTCSEEE
T ss_pred             CCEEEEEEEECCCCCEEEEEeCCCEEEEEECCCCcEEEEEcCCCCCEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEE
Confidence            8999999999  999999999999999999876                    788999999999999999999999998


Q ss_pred             EEeccCCceeEEEEEEecCCCeeEEccccceEEEEEcCCCC--eEEEeeecCCCcEEEEeecc
Q 042146          201 TYSGYTNSKYCISSTFSVTNGKYIVSHRDPVISVASHPAKN--IIASGALDNDRTMKIWTQEK  261 (262)
Q Consensus       201 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~--~l~~~~~d~d~~i~iw~~~~  261 (262)
                      .+..                      |...+.+++|+|++.  +++++   .++.+.+|++..
T Consensus       265 ~~~~----------------------~~~~v~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~  302 (814)
T 3mkq_A          265 TLNV----------------------GLERSWCIATHPTGRKNYIASG---FDNGFTVLSLGN  302 (814)
T ss_dssp             EECC----------------------SSSSEEEEEECTTCGGGEEEEE---ETTEEEEEECSC
T ss_pred             Eeec----------------------CCCcEEEEEEccCCCceEEEEE---eCCCEEEEEcCC
Confidence            8876                      778899999999987  35554   467788888653

>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1

Probab=100.00  E-value=5.3e-31  Score=212.79  Aligned_cols=201  Identities=28%  Similarity=0.511  Sum_probs=171.7

Q ss_pred             ccCcCceEEEEEccCCCeEEEecCCCeEEEeecCCCCCCCCCCCCCCccccCCcccccc-------------ceeEEEEe
Q 042146           20 NGHLRAVSYVKFSHDGRLLTSSSAEKTLLTYSLSSISNFDSTPPSPLQKFTGHEQGISD-------------LATIRLWD   86 (262)
Q Consensus        20 ~~h~~~v~~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~-------------~~~i~v~d   86 (262)
                      .+|...|.|+++  ++++|++|+.||.|++||+.+...        ...+.+|...+.+             .+.|++||
T Consensus       130 ~~~~~~v~~~~~--d~~~l~~g~~dg~i~iwd~~~~~~--------~~~~~~h~~~v~~l~~~~~~l~sg~~dg~i~vwd  199 (435)
T 1p22_A          130 SETSKGVYCLQY--DDQKIVSGLRDNTIKIWDKNTLEC--------KRILTGHTGSVLCLQYDERVIITGSSDSTVRVWD  199 (435)
T ss_dssp             CSSCCCEEEEEC--CSSEEEEEESSSCEEEEESSSCCE--------EEEECCCSSCEEEEECCSSEEEEEETTSCEEEEE
T ss_pred             cCCCCcEEEEEE--CCCEEEEEeCCCeEEEEeCCCCeE--------EEEEcCCCCcEEEEEECCCEEEEEcCCCeEEEEE
Confidence            456778999887  789999999999999999865332        2223333333322             23899999


Q ss_pred             cCCCccceecccCCcceEEEEEeCCCCEEEeecCCCeEEEEECCCCeee---eeeecCCCCeeeEEEccCCCEEEEEeCC
Q 042146           87 VPTATSLKTLIGHTNYVFCINFNPQSNRIVSDTFNETIRIWDIKTGKCL---KVLPAHSDPVTAIDFNRDGTMIVTSSYD  163 (262)
Q Consensus        87 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~---~~~~~~~~~v~~~~~~~~~~~l~~~~~d  163 (262)
                      +.+++.+..+.+|...|.+++|+  +.++++|+.||.|++||+++++..   ..+.+|...|.+++|  +++++++++.|
T Consensus       200 ~~~~~~~~~~~~h~~~v~~l~~~--~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~--~~~~l~s~~~d  275 (435)
T 1p22_A          200 VNTGEMLNTLIHHCEAVLHLRFN--NGMMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDF--DDKYIVSASGD  275 (435)
T ss_dssp             SSSCCEEEEECCCCSCEEEEECC--TTEEEEEETTSCEEEEECSSSSCCEEEEEECCCSSCEEEEEE--ETTEEEEEETT
T ss_pred             CCCCcEEEEEcCCCCcEEEEEEc--CCEEEEeeCCCcEEEEeCCCCCCceeeeEecCCCCcEEEEEe--CCCEEEEEeCC
Confidence            99999999999999999999997  469999999999999999987655   667789999999999  68899999999


Q ss_pred             CeEEEEeCCC------------------CCccEEEEEcCCCeEEEEecCCCceeeEEeccCCceeEEEEEEecCCCeeEE
Q 042146          164 GLYRILDAST------------------PNGKFILVGTLDNTLRLWNYSTRKILKTYSGYTNSKYCISSTFSVTNGKYIV  225 (262)
Q Consensus       164 g~i~~~d~~~------------------~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  225 (262)
                      |.|++||+++                  .+++++++|+.||.|++||+++++++..+.+                     
T Consensus       276 g~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~---------------------  334 (435)
T 1p22_A          276 RTIKVWNTSTCEFVRTLNGHKRGIACLQYRDRLVVSGSSDNTIRLWDIECGACLRVLEG---------------------  334 (435)
T ss_dssp             SEEEEEETTTCCEEEEEECCSSCEEEEEEETTEEEEEETTSCEEEEETTTCCEEEEECC---------------------
T ss_pred             CeEEEEECCcCcEEEEEcCCCCcEEEEEeCCCEEEEEeCCCeEEEEECCCCCEEEEEeC---------------------
Confidence            9999999887                  3578999999999999999999999998887                     


Q ss_pred             ccccceEEEEEcCCCCeEEEeeecCCCcEEEEeec
Q 042146          226 SHRDPVISVASHPAKNIIASGALDNDRTMKIWTQE  260 (262)
Q Consensus       226 ~~~~~v~~~~~~p~~~~l~~~~~d~d~~i~iw~~~  260 (262)
                       |...|.+++|  ++.+|++|+  .||.|++||+.
T Consensus       335 -h~~~v~~~~~--~~~~l~sg~--~dg~i~vwd~~  364 (435)
T 1p22_A          335 -HEELVRCIRF--DNKRIVSGA--YDGKIKVWDLV  364 (435)
T ss_dssp             -CSSCEEEEEC--CSSEEEEEE--TTSCEEEEEHH
T ss_pred             -CcCcEEEEEe--cCCEEEEEe--CCCcEEEEECC
Confidence             8889999999  688999999  89999999975

>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}

Probab=100.00  E-value=8.2e-32  Score=230.94  Aligned_cols=205  Identities=19%  Similarity=0.308  Sum_probs=171.9

Q ss_pred             CCCCceeeec----ccccceecccCcCceEEEEEccC--CCeEEEecCCCeEEEeecCCCCCCCCCCCCCCccccCCccc
Q 042146            2 SSDRSLESFR----PYTLTQTLNGHLRAVSYVKFSHD--GRLLTSSSAEKTLLTYSLSSISNFDSTPPSPLQKFTGHEQG   75 (262)
Q Consensus         2 s~d~~i~~~~----~~~~~~~~~~h~~~v~~~~~~~~--~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~   75 (262)
                      +.||+|..|+    ..+....+.+|.++|++++|+|+  +++|++|+.||.|++||+.                      
T Consensus        28 ~~dg~I~vwd~~~~~~~~~~~l~~h~~~V~~l~~s~~~~~~~l~s~s~Dg~I~vwd~~----------------------   85 (753)
T 3jro_A           28 SSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVLIWKEE----------------------   85 (753)
T ss_dssp             ETTTEEEEEEEETTEEEEEEEECCCSSCEEEEEECCTTSCSEEEEEETTSCEEEEEEE----------------------
T ss_pred             ECCCcEEEEecCCCCCccceeccCCcCceEEEEecCCCCCCEEEEEeCCCeEEEEECC----------------------
Confidence            3688888886    34677889999999999999988  9999999999999999653                      


Q ss_pred             cccceeEEEEecCCCc--cceecccCCcceEEEEEeCC--CCEEEeecCCCeEEEEECCCCe--eeeeeecCCCCeeeEE
Q 042146           76 ISDLATIRLWDVPTAT--SLKTLIGHTNYVFCINFNPQ--SNRIVSDTFNETIRIWDIKTGK--CLKVLPAHSDPVTAID  149 (262)
Q Consensus        76 v~~~~~i~v~d~~~~~--~~~~~~~~~~~v~~~~~~~~--~~~l~~~~~dg~i~vwd~~~~~--~~~~~~~~~~~v~~~~  149 (262)
                                   +++  .+..+..|...|.+++|+|+  ++++++|+.||.|++||++++.  ....+..|...|.+++
T Consensus        86 -------------~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~l~sgs~dg~I~vwdl~~~~~~~~~~~~~~~~~v~~l~  152 (753)
T 3jro_A           86 -------------NGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSAS  152 (753)
T ss_dssp             -------------TTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEECCSSSCCCCEEEECCSSCEEEEE
T ss_pred             -------------CCcccccccccCCCCCeEEEEECCCCCCCEEEEEeCCCcEEEEEeecCCCcceeEeecCCCceEEEE
Confidence                         333  55667789999999999998  9999999999999999998773  3455678999999999


Q ss_pred             Ecc-------------CCCEEEEEeCCCeEEEEeCCC------------------------CC---ccEEEEEcCCCeEE
Q 042146          150 FNR-------------DGTMIVTSSYDGLYRILDAST------------------------PN---GKFILVGTLDNTLR  189 (262)
Q Consensus       150 ~~~-------------~~~~l~~~~~dg~i~~~d~~~------------------------~~---~~~l~~~~~dg~i~  189 (262)
                      |+|             ++..+++|+.||.|++||++.                        |+   ++++++|+.||.|+
T Consensus       153 ~~p~~~~~~~~~~~~~d~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~~~l~s~s~Dg~I~  232 (753)
T 3jro_A          153 WAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYLASVSQDRTCI  232 (753)
T ss_dssp             ECCCC---------CGGGCCEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSSEEEEEEESSSCEE
T ss_pred             ecCcccccccccccCCCCCEEEEEECCCeEEEEeccCCcccceeeeeecCCCCcEEEEEeccCCCCCCEEEEEecCCEEE
Confidence            999             589999999999999999764                        67   89999999999999


Q ss_pred             EEecCCCceeeEEeccCCceeEEEEEEecCCCeeEEccccceEEEEEcCCCCeEEEeeecCCCcEEEEeec
Q 042146          190 LWNYSTRKILKTYSGYTNSKYCISSTFSVTNGKYIVSHRDPVISVASHPAKNIIASGALDNDRTMKIWTQE  260 (262)
Q Consensus       190 i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~d~d~~i~iw~~~  260 (262)
                      +||+++++.........                 ...|...|.+++|+|++++|++++  .||.|++|+++
T Consensus       233 iwd~~~~~~~~~~~~~~-----------------~~~~~~~v~~l~~spdg~~l~s~s--~Dg~I~vwd~~  284 (753)
T 3jro_A          233 IWTQDNEQGPWKKTLLK-----------------EEKFPDVLWRASWSLSGNVLALSG--GDNKVTLWKEN  284 (753)
T ss_dssp             EEEESSSSSCCBCCBSS-----------------SSCCSSCCCCEEECTTTCCEEEEC--SSSCEECCBCC
T ss_pred             EecCCCCCCcceeEEec-----------------cCCCCCceEEEEEcCCCCEEEEEc--CCCEEEEEecC
Confidence            99999864221111000                 001788999999999999999999  89999999986

>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A

Probab=100.00  E-value=1e-31  Score=214.85  Aligned_cols=201  Identities=15%  Similarity=0.303  Sum_probs=170.5

Q ss_pred             CCCCceeeecc--c-------ccceecccCcCceEEEEEccCC-CeEEEecCCCeEEEeecCCCCCCCCCCCCCCccccC
Q 042146            2 SSDRSLESFRP--Y-------TLTQTLNGHLRAVSYVKFSHDG-RLLTSSSAEKTLLTYSLSSISNFDSTPPSPLQKFTG   71 (262)
Q Consensus         2 s~d~~i~~~~~--~-------~~~~~~~~h~~~v~~~~~~~~~-~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~   71 (262)
                      +.|++|..|+.  .       +.+..+.+|...|.+++|+|++ ++|++++.||.|++||+                   
T Consensus       101 s~dg~v~vw~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~-------------------  161 (402)
T 2aq5_A          101 SEDCTVMVWEIPDGGLVLPLREPVITLEGHTKRVGIVAWHPTAQNVLLSAGCDNVILVWDV-------------------  161 (402)
T ss_dssp             ETTSEEEEEECCTTCCSSCBCSCSEEEECCSSCEEEEEECSSBTTEEEEEETTSCEEEEET-------------------
T ss_pred             eCCCeEEEEEccCCCCccccCCceEEecCCCCeEEEEEECcCCCCEEEEEcCCCEEEEEEC-------------------
Confidence            36888888863  2       4578889999999999999998 69999999999888855                   


Q ss_pred             CccccccceeEEEEecCCCccceec--ccCCcceEEEEEeCCCCEEEeecCCCeEEEEECCCCeeeeee-ecCCCC-eee
Q 042146           72 HEQGISDLATIRLWDVPTATSLKTL--IGHTNYVFCINFNPQSNRIVSDTFNETIRIWDIKTGKCLKVL-PAHSDP-VTA  147 (262)
Q Consensus        72 ~~~~v~~~~~i~v~d~~~~~~~~~~--~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~-~~~~~~-v~~  147 (262)
                                      .+++.+..+  ..|...|.+++|+|++++|++++.||.|++||+++++.+..+ ..|.+. +.+
T Consensus       162 ----------------~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~  225 (402)
T 2aq5_A          162 ----------------GTGAAVLTLGPDVHPDTIYSVDWSRDGALICTSCRDKRVRVIEPRKGTVVAEKDRPHEGTRPVH  225 (402)
T ss_dssp             ----------------TTTEEEEEECTTTCCSCEEEEEECTTSSCEEEEETTSEEEEEETTTTEEEEEEECSSCSSSCCE
T ss_pred             ----------------CCCCccEEEecCCCCCceEEEEECCCCCEEEEEecCCcEEEEeCCCCceeeeeccCCCCCcceE
Confidence                            455666666  779999999999999999999999999999999999998888 678775 899


Q ss_pred             EEEccCCCEEEEE---eCCCeEEEEeCCC----------------------CCccEEE-EEcCCCeEEEEecCCCce-ee
Q 042146          148 IDFNRDGTMIVTS---SYDGLYRILDAST----------------------PNGKFIL-VGTLDNTLRLWNYSTRKI-LK  200 (262)
Q Consensus       148 ~~~~~~~~~l~~~---~~dg~i~~~d~~~----------------------~~~~~l~-~~~~dg~i~i~d~~~~~~-~~  200 (262)
                      +.|+|++.+|+++   +.|+.|++||++.                      +++++|+ +|+.||.|++||+.+++. +.
T Consensus       226 ~~~~~~~~~l~~g~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~g~~dg~i~i~d~~~~~~~~~  305 (402)
T 2aq5_A          226 AVFVSEGKILTTGFSRMSERQVALWDTKHLEEPLSLQELDTSSGVLLPFFDPDTNIVYLCGKGDSSIRYFEITSEAPFLH  305 (402)
T ss_dssp             EEECSTTEEEEEEECTTCCEEEEEEETTBCSSCSEEEECCCCSSCEEEEEETTTTEEEEEETTCSCEEEEEECSSTTCEE
T ss_pred             EEEcCCCcEEEEeccCCCCceEEEEcCccccCCceEEeccCCCceeEEEEcCCCCEEEEEEcCCCeEEEEEecCCCcceE
Confidence            9999999999999   7999999999875                      6778775 566899999999998874 55


Q ss_pred             EEeccCCceeEEEEEEecCCCeeEEccccceEEEEEcCCCCeEEEeeecCCCcEEEEeecc
Q 042146          201 TYSGYTNSKYCISSTFSVTNGKYIVSHRDPVISVASHPAKNIIASGALDNDRTMKIWTQEK  261 (262)
Q Consensus       201 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~d~d~~i~iw~~~~  261 (262)
                      .+..+.                    |..+|.+++|+|++.+++++    ++.+++|++..
T Consensus       306 ~l~~~~--------------------~~~~v~~~~~sp~~~~~~s~----~~~~~~~~l~~  342 (402)
T 2aq5_A          306 YLSMFS--------------------SKESQRGMGYMPKRGLEVNK----CEIARFYKLHE  342 (402)
T ss_dssp             EEEEEC--------------------CSSCCSEEEECCGGGSCGGG----TEEEEEEEEET
T ss_pred             eecccc--------------------cCCcccceEEecccccceec----ceeEEEEEcCC
Confidence            555422                    56899999999999988753    46999999864

>3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A

Probab=100.00  E-value=3e-31  Score=208.71  Aligned_cols=246  Identities=15%  Similarity=0.181  Sum_probs=158.6

Q ss_pred             ceeeecccccceecccCcCceEEEEEccCCCeEEEecCCCeEEEeecCCCCCCCCCC--CCCCccccCCcccc----ccc
Q 042146            6 SLESFRPYTLTQTLNGHLRAVSYVKFSHDGRLLTSSSAEKTLLTYSLSSISNFDSTP--PSPLQKFTGHEQGI----SDL   79 (262)
Q Consensus         6 ~i~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~--~~~~~~~~~~~~~v----~~~   79 (262)
                      .|+.+...+++..++.|..+|++++|+|++++|++|+.++ +++|+++.........  ......+......+    ...
T Consensus         2 ~i~s~~~~~~~~~~~~h~~~V~~v~fs~dg~~la~g~~~~-~~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d   80 (355)
T 3vu4_A            2 PLGSMITRNPIVPENHVSNPVTDYEFNQDQSCLILSTLKS-FEIYNVHPVAHIMSQEMRHLSKVRMLHRTNYVAFVTGVK   80 (355)
T ss_dssp             -----------------CCCCCEEEECTTSSEEEEECSSE-EEEEEETTEEEEEEEECSCCCEEEECTTSSEEEEECSST
T ss_pred             CcccccccCCccccccCCCceEEEEECCCCCEEEEEcCCE-EEEEecCCcceeeeeecCCeEEEEEcCCCCEEEEEECCc
Confidence            4556666777778899999999999999999999998775 7899987543211100  11111111111111    111


Q ss_pred             eeEEEEecCCCccceecccCCcceEEEEEeCCC-----------------------------------CEEEe--ecCCC
Q 042146           80 ATIRLWDVPTATSLKTLIGHTNYVFCINFNPQS-----------------------------------NRIVS--DTFNE  122 (262)
Q Consensus        80 ~~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~-----------------------------------~~l~~--~~~dg  122 (262)
                      ..|++||..+++.+..+. +...|.+++++++.                                   .+++.  |+.+|
T Consensus        81 ~~v~iWd~~~~~~~~~~~-~~~~v~~v~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~~s~~~la~~sg~~~g  159 (355)
T 3vu4_A           81 EVVHIWDDVKKQDVSRIK-VDAPVKDLFLSREFIVVSYGDVISVFKFGNPWKRITDDIRFGGVCEFSNGLLVYSNEFNLG  159 (355)
T ss_dssp             TEEEEEETTTTEEEEEEE-CSSCEEEEEECSSEEEEEETTEEEEEESSTTCCBSSCCEEEEEEEEEETTEEEEEESSCTT
T ss_pred             cEEEEEECCCCcEEEEEE-CCCceEEEEEcCCEEEEEEcCEEEEEECCCCceeeEEeccCCceEEEEccEEEEeCCCcCc
Confidence            289999998888877765 55678887777642                                   23333  68899


Q ss_pred             eEEEEECCCCe----------------eeeeeecCCCCeeeEEEccCCCEEEEEeCCCe-EEEEeCCC------------
Q 042146          123 TIRIWDIKTGK----------------CLKVLPAHSDPVTAIDFNRDGTMIVTSSYDGL-YRILDAST------------  173 (262)
Q Consensus       123 ~i~vwd~~~~~----------------~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~-i~~~d~~~------------  173 (262)
                      .|++||+++++                .+..+.+|.++|++++|+|++++|++|+.|++ |++||+++            
T Consensus       160 ~v~iwd~~~~~~~~~~~~~~~~~~~~p~~~~~~~h~~~v~~~~~s~~g~~l~s~s~d~~~v~iwd~~~~~~~~~~~~g~h  239 (355)
T 3vu4_A          160 QIHITKLQSSGSATTQDQGVQQKAILGKGVLIKAHTNPIKMVRLNRKSDMVATCSQDGTIIRVFKTEDGVLVREFRRGLD  239 (355)
T ss_dssp             CEEEEECCC------------------CCEEECCCSSCEEEEEECTTSSEEEEEETTCSEEEEEETTTCCEEEEEECTTC
T ss_pred             EEEEEECCCCCccccccccccccccCcccEEEEccCCceEEEEECCCCCEEEEEeCCCCEEEEEECCCCcEEEEEEcCCC
Confidence            99999998765                26778899999999999999999999999998 99999875            


Q ss_pred             ----------CCccEEEEEcCCCeEEEEecCCCceee--EEec-----cCCceeEEEEEEecCCCeeEEccccceEEEEE
Q 042146          174 ----------PNGKFILVGTLDNTLRLWNYSTRKILK--TYSG-----YTNSKYCISSTFSVTNGKYIVSHRDPVISVAS  236 (262)
Q Consensus       174 ----------~~~~~l~~~~~dg~i~i~d~~~~~~~~--~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~  236 (262)
                                |++++|++++.|+.|++||++.+....  .+..     +....+.........      ....+...++|
T Consensus       240 ~~~v~~~~~s~~~~~l~s~s~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~a~  313 (355)
T 3vu4_A          240 RADVVDMKWSTDGSKLAVVSDKWTLHVFEIFNDQDNKRHALKGWINMKYFQSEWSLCNFKLSV------DKHVRGCKIAW  313 (355)
T ss_dssp             CSCEEEEEECTTSCEEEEEETTCEEEEEESSCCSCCCSEETTTTEECCCCCCSSCSEEEECCC------CTTCCCCEEEE
T ss_pred             CCcEEEEEECCCCCEEEEEECCCEEEEEEccCCCCcccccccceeeccccccccceeEEEecc------CCCCCceEEEE
Confidence                      789999999999999999998653221  1111     000111000000000      02334467999


Q ss_pred             cCCCCeEEEeeecCCCcEEEEeecc
Q 042146          237 HPAKNIIASGALDNDRTMKIWTQEK  261 (262)
Q Consensus       237 ~p~~~~l~~~~~d~d~~i~iw~~~~  261 (262)
                      +|+++.|++++  .||.+++|++..
T Consensus       314 ~~d~~~l~~~~--~dg~~~~~~~~~  336 (355)
T 3vu4_A          314 ISESSLVVVWP--HTRMIETFKVVF  336 (355)
T ss_dssp             SSSSEEEEEET--TTTEEEEEEEEE
T ss_pred             eCCCCEEEEEe--CCCeEEEEEEEc
Confidence            99999999999  899999999753

>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A

Probab=100.00  E-value=6.5e-31  Score=201.95  Aligned_cols=193  Identities=19%  Similarity=0.273  Sum_probs=150.8

Q ss_pred             CCCCceeeecc----cccceecccCcCceEEEEEccC--CCeEEEecCCCeEEEeecCCCCCCCC----CCCCCCccccC
Q 042146            2 SSDRSLESFRP----YTLTQTLNGHLRAVSYVKFSHD--GRLLTSSSAEKTLLTYSLSSISNFDS----TPPSPLQKFTG   71 (262)
Q Consensus         2 s~d~~i~~~~~----~~~~~~~~~h~~~v~~~~~~~~--~~~l~s~~~d~~i~iw~~~~~~~~~~----~~~~~~~~~~~   71 (262)
                      +.|++++.|+.    .+++.++.+|.++|.+++|+|+  +++|++|+.|++|++||++.......    .....+..+..
T Consensus        28 s~D~~v~iw~~~~~~~~~~~~l~gH~~~V~~v~~s~~~~g~~l~s~s~D~~v~iWd~~~~~~~~~~~~~~h~~~v~~v~~  107 (297)
T 2pm7_B           28 SSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVMIWKEENGRWSQIAVHAVHSASVNSVQW  107 (297)
T ss_dssp             ETTSCEEEEEBCSSCBCCCEEECCCSSCEEEEEECCGGGCSEEEEEETTTEEEEEEBSSSCBCCCEEECCCSSCEEEEEE
T ss_pred             eCCCEEEEEecCCCCcEEEEEEccccCCeEEEEecCCCcCCEEEEEcCCCEEEEEEcCCCceEEEEEeecCCCceeEEEe
Confidence            46899999963    3577899999999999999864  89999999999999999875421110    00111111111


Q ss_pred             Cc---cc----cccceeEEEEecCCCcc--ceecccCCcceEEEEEeCC-------------CCEEEeecCCCeEEEEEC
Q 042146           72 HE---QG----ISDLATIRLWDVPTATS--LKTLIGHTNYVFCINFNPQ-------------SNRIVSDTFNETIRIWDI  129 (262)
Q Consensus        72 ~~---~~----v~~~~~i~v~d~~~~~~--~~~~~~~~~~v~~~~~~~~-------------~~~l~~~~~dg~i~vwd~  129 (262)
                      +.   ..    ....+.|++||++++..  ...+.+|...|.+++|+|+             +++|++|+.|++|++||+
T Consensus       108 ~p~~~g~~l~s~s~d~~v~~wd~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~~~~~~~~~~~l~sgs~D~~v~lwd~  187 (297)
T 2pm7_B          108 APHEYGPMLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKY  187 (297)
T ss_dssp             CCGGGCSEEEEEETTSEEEEEEBCSSSCBCCEEEECCSSCEEEEEECCCC------------CCEEEEEETTSCEEEEEE
T ss_pred             CcCCCCcEEEEEECCCcEEEEEecCCCceeeeeeecccCccceEeecCCcccccccCCCCCCcceEEEEcCCCcEEEEEE
Confidence            11   11    11233899999987642  3566789999999999996             579999999999999999


Q ss_pred             CCCe----eeeeeecCCCCeeeEEEccCC---CEEEEEeCCCeEEEEeCCC-------------------------CCcc
Q 042146          130 KTGK----CLKVLPAHSDPVTAIDFNRDG---TMIVTSSYDGLYRILDAST-------------------------PNGK  177 (262)
Q Consensus       130 ~~~~----~~~~~~~~~~~v~~~~~~~~~---~~l~~~~~dg~i~~~d~~~-------------------------~~~~  177 (262)
                      ++++    ....+.+|...|.+++|+|++   .+|++++.|++|++||++.                         |+++
T Consensus       188 ~~~~~~~~~~~~l~~H~~~V~~v~~sp~~~~~~~las~s~D~~v~iWd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~  267 (297)
T 2pm7_B          188 NSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYMASVSQDRTCIIWTQDNEQGPWKKTLLKEEKFPDVLWRASWSLSGN  267 (297)
T ss_dssp             ETTTTEEEEEEEECCCSSCEEEEEECCCCSSSEEEEEEETTSCEEEEEESSTTSCCEEEESSSSCCSSCEEEEEECSSSC
T ss_pred             cCCCceEEEEEEecCCCCceEEEEECCCCCCceEEEEEECCCcEEEEEeCCCCCccceeeeecccCCCcEEEEEECCCCC
Confidence            8765    566788999999999999984   7999999999999998642                         6888


Q ss_pred             EEEEEcCCCeEEEEecC
Q 042146          178 FILVGTLDNTLRLWNYS  194 (262)
Q Consensus       178 ~l~~~~~dg~i~i~d~~  194 (262)
                      +|++++.||.|++|+..
T Consensus       268 ~las~~~D~~v~lw~~~  284 (297)
T 2pm7_B          268 VLALSGGDNKVTLWKEN  284 (297)
T ss_dssp             CEEEEETTSCEEEEEEC
T ss_pred             EEEEEcCCCcEEEEEEC
Confidence            99999999999999976

>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae}

Probab=100.00  E-value=8.7e-31  Score=227.85  Aligned_cols=197  Identities=15%  Similarity=0.135  Sum_probs=159.3

Q ss_pred             ccCcCceEEEEEccCCCeEEEecCCCeEEEeecCCCCCCCCCCCCCCccccCCccccccceeEEEEecCCCccceecccC
Q 042146           20 NGHLRAVSYVKFSHDGRLLTSSSAEKTLLTYSLSSISNFDSTPPSPLQKFTGHEQGISDLATIRLWDVPTATSLKTLIGH   99 (262)
Q Consensus        20 ~~h~~~v~~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~i~v~d~~~~~~~~~~~~~   99 (262)
                      .+|.+.|++++|+|++++||+|+.||+|++|+...                                   .+....+ .|
T Consensus        14 ~gh~~~V~~lafspdg~~lAsgs~Dg~I~lw~~~~-----------------------------------~~~~~~~-~~   57 (902)
T 2oaj_A           14 YGMSSKPIAAAFDFTQNLLAIATVTGEVHIYGQQQ-----------------------------------VEVVIKL-ED   57 (902)
T ss_dssp             EECSSCEEEEEEETTTTEEEEEETTSEEEEECSTT-----------------------------------CEEEEEC-SS
T ss_pred             cCCCCCcEEEEECCCCCEEEEEeCCCEEEEEeCCC-----------------------------------cEEEEEc-CC
Confidence            48999999999999999999999999999996532                                   2222222 36


Q ss_pred             CcceEEEEEeCCCCEEEeecCCCeEEEEECCCCeeeeeeecCCCCeeeEEEccCCCEEEEEeCCCeEEEEeCCC------
Q 042146          100 TNYVFCINFNPQSNRIVSDTFNETIRIWDIKTGKCLKVLPAHSDPVTAIDFNRDGTMIVTSSYDGLYRILDAST------  173 (262)
Q Consensus       100 ~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~d~~~------  173 (262)
                      ...|.+++|+| +++|++++.|++|++||+++++++..+. |...|++++|+|++++|++|+.||.|++||++.      
T Consensus        58 ~~~V~~l~fsp-g~~L~S~s~D~~v~lWd~~~~~~~~~~~-~~~~V~~v~~sp~g~~l~sgs~dg~V~lwd~~~~~~~~~  135 (902)
T 2oaj_A           58 RSAIKEMRFVK-GIYLVVINAKDTVYVLSLYSQKVLTTVF-VPGKITSIDTDASLDWMLIGLQNGSMIVYDIDRDQLSSF  135 (902)
T ss_dssp             CCCEEEEEEET-TTEEEEEETTCEEEEEETTTCSEEEEEE-CSSCEEEEECCTTCSEEEEEETTSCEEEEETTTTEEEEE
T ss_pred             CCCEEEEEEcC-CCEEEEEECcCeEEEEECCCCcEEEEEc-CCCCEEEEEECCCCCEEEEEcCCCcEEEEECCCCccccc
Confidence            78899999999 8899999999999999999999888886 778999999999999999999999999999753      


Q ss_pred             -------------------------C-CccEEEEEcCCCeEEEEecCCCceeeEEeccCCceeEEEEEEecCCCeeEEcc
Q 042146          174 -------------------------P-NGKFILVGTLDNTLRLWNYSTRKILKTYSGYTNSKYCISSTFSVTNGKYIVSH  227 (262)
Q Consensus       174 -------------------------~-~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  227 (262)
                                               | ++..+++|+.||.| +||+++++++..+..+......    ...........|
T Consensus       136 ~i~~~~~~~~~~~~h~~~V~sl~~sp~~~~~l~~g~~dg~v-lWd~~~~~~~~~~~~~~~~g~~----~~~~~~~~~~~h  210 (902)
T 2oaj_A          136 KLDNLQKSSFFPAARLSPIVSIQWNPRDIGTVLISYEYVTL-TYSLVENEIKQSFIYELPPFAP----GGDFSEKTNEKR  210 (902)
T ss_dssp             EECCHHHHHTCSSSCCCCCCEEEEETTEEEEEEEECSSCEE-EEETTTTEEEEEECCCBCTTCC----CSTTCCCTTSCB
T ss_pred             eeccccccccccccCCCCeEEEEEccCCCCEEEEEeCCCcE-EEECCCCceEEEEecccCCcCC----Cccccccccccc
Confidence                                     2 34689999999999 9999999998888764110000    000000001125


Q ss_pred             ccceEEEEEcCCCCeEEEeeecCCCcEEEEeecc
Q 042146          228 RDPVISVASHPAKNIIASGALDNDRTMKIWTQEK  261 (262)
Q Consensus       228 ~~~v~~~~~~p~~~~l~~~~~d~d~~i~iw~~~~  261 (262)
                      ...|.+++|+|++.+|++++  .||.|++||+++
T Consensus       211 ~~~V~~v~fspdg~~lasgs--~Dg~i~lWd~~~  242 (902)
T 2oaj_A          211 TPKVIQSLYHPNSLHIITIH--EDNSLVFWDANS  242 (902)
T ss_dssp             CCCEEEEEECTTSSEEEEEE--TTCCEEEEETTT
T ss_pred             CCCeEEEEEcCCCCEEEEEE--CCCeEEEEECCC
Confidence            67899999999999999999  999999999854

>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}

Probab=100.00  E-value=3.3e-31  Score=208.60  Aligned_cols=195  Identities=14%  Similarity=0.195  Sum_probs=149.7

Q ss_pred             CCCCceeeecc--cc----cceecccCcCceEEEEEccCCCeEEEecCCCeEEEeecCCCCCCCCCC--CCCCccc--cC
Q 042146            2 SSDRSLESFRP--YT----LTQTLNGHLRAVSYVKFSHDGRLLTSSSAEKTLLTYSLSSISNFDSTP--PSPLQKF--TG   71 (262)
Q Consensus         2 s~d~~i~~~~~--~~----~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~--~~~~~~~--~~   71 (262)
                      +.|++|+.|+.  .+    ......+|...|++++|+|++++|++|+.|++|++||+..........  ...+..+  ..
T Consensus       112 s~dg~v~lWd~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~l~sgs~dg~v~iwd~~~~~~~~~~~~h~~~v~~v~~s~  191 (357)
T 4g56_B          112 SDSGAVELWEILEKESLLVNKFAKYEHDDIVKTLSVFSDGTQAVSGGKDFSVKVWDLSQKAVLKSYNAHSSEVNCVAACP  191 (357)
T ss_dssp             ETTSCEEEC--------CCCCEEECCCSSCEEEEEECSSSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECT
T ss_pred             ECCCEEEEeeccccceeEEEeeccCCCCCCEEEEEECCCCCEEEEEeCCCeEEEEECCCCcEEEEEcCCCCCEEEEEEcc
Confidence            36888888863  22    223345899999999999999999999999999999987643221111  1111111  11


Q ss_pred             Cccc-c---ccceeEEEEecCCCccceec--ccCCcceEEEEEeCC-CCEEEeecCCCeEEEEECCCCeeeeeeecCCCC
Q 042146           72 HEQG-I---SDLATIRLWDVPTATSLKTL--IGHTNYVFCINFNPQ-SNRIVSDTFNETIRIWDIKTGKCLKVLPAHSDP  144 (262)
Q Consensus        72 ~~~~-v---~~~~~i~v~d~~~~~~~~~~--~~~~~~v~~~~~~~~-~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~  144 (262)
                      .... +   ...+.|++||+++++....+  ..+...+.+++|+|+ +.+|++|+.|+.|++||+++++++..+..|...
T Consensus       192 ~~~~~~~s~~~dg~v~~wd~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~~la~g~~d~~i~~wd~~~~~~~~~~~~~~~~  271 (357)
T 4g56_B          192 GKDTIFLSCGEDGRILLWDTRKPKPATRIDFCASDTIPTSVTWHPEKDDTFACGDETGNVSLVNIKNPDSAQTSAVHSQN  271 (357)
T ss_dssp             TCSSCEEEEETTSCEEECCTTSSSCBCBCCCTTCCSCEEEEEECTTSTTEEEEEESSSCEEEEESSCGGGCEEECCCSSC
T ss_pred             CCCceeeeeccCCceEEEECCCCceeeeeeeccccccccchhhhhcccceEEEeecccceeEEECCCCcEeEEEecccee
Confidence            1111 1   12238999999998877654  456778999999996 568899999999999999999999999999999


Q ss_pred             eeeEEEccCC-CEEEEEeCCCeEEEEeCCC-------------------C-CccEEEEEcCCCeEEEEecCCC
Q 042146          145 VTAIDFNRDG-TMIVTSSYDGLYRILDAST-------------------P-NGKFILVGTLDNTLRLWNYSTR  196 (262)
Q Consensus       145 v~~~~~~~~~-~~l~~~~~dg~i~~~d~~~-------------------~-~~~~l~~~~~dg~i~i~d~~~~  196 (262)
                      |++++|+|++ ++|++++.|++|++||++.                   | ++.+|++++.||.|++|++...
T Consensus       272 v~~l~~sp~~~~~lasgs~D~~i~iwd~~~~~~~~~~~H~~~V~~vafsP~d~~~l~s~s~Dg~v~iW~~~~~  344 (357)
T 4g56_B          272 ITGLAYSYHSSPFLASISEDCTVAVLDADFSEVFRDLSHRDFVTGVAWSPLDHSKFTTVGWDHKVLHHHLPSE  344 (357)
T ss_dssp             EEEEEECSSSSCCEEEEETTSCEEEECTTSCEEEEECCCSSCEEEEEECSSSTTEEEEEETTSCEEEEECC--
T ss_pred             EEEEEEcCCCCCEEEEEeCCCEEEEEECCCCcEeEECCCCCCEEEEEEeCCCCCEEEEEcCCCeEEEEECCCC
Confidence            9999999987 5799999999999999886                   5 7889999999999999999754

>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R

Probab=100.00  E-value=9.7e-30  Score=199.26  Aligned_cols=216  Identities=23%  Similarity=0.421  Sum_probs=164.2

Q ss_pred             CCCCceeeeccc---------ccceecccCcCceEEEEEccCCCeEEEecCCCeEEEeecCCCCCCCCCCCCCCccccCC
Q 042146            2 SSDRSLESFRPY---------TLTQTLNGHLRAVSYVKFSHDGRLLTSSSAEKTLLTYSLSSISNFDSTPPSPLQKFTGH   72 (262)
Q Consensus         2 s~d~~i~~~~~~---------~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~   72 (262)
                      +.|++|+.|+..         .+...+.+|..+|.+++|+|++.+|++|+.|++|++||+.....        ...+.+|
T Consensus        46 s~D~~v~iWd~~~~~~~~~~~~~~~~l~~h~~~V~~~~~~~~~~~l~s~s~D~~v~lwd~~~~~~--------~~~~~~h  117 (343)
T 2xzm_R           46 SRDKTVMIWKLYEEEQNGYFGIPHKALTGHNHFVSDLALSQENCFAISSSWDKTLRLWDLRTGTT--------YKRFVGH  117 (343)
T ss_dssp             ETTSCEEEEEECSSCCSSBSEEEEEEECCCSSCEEEEEECSSTTEEEEEETTSEEEEEETTSSCE--------EEEEECC
T ss_pred             cCCCEEEEEECCcCCcccccccccchhccCCCceEEEEECCCCCEEEEEcCCCcEEEEECCCCcE--------EEEEcCC
Confidence            468999998742         35667899999999999999999999999999999999875432        2233344


Q ss_pred             ccccccc---------------eeEEEEecCCCccce--ecccCCcceEEEEEeCCC----------CEEEeecCCCeEE
Q 042146           73 EQGISDL---------------ATIRLWDVPTATSLK--TLIGHTNYVFCINFNPQS----------NRIVSDTFNETIR  125 (262)
Q Consensus        73 ~~~v~~~---------------~~i~v~d~~~~~~~~--~~~~~~~~v~~~~~~~~~----------~~l~~~~~dg~i~  125 (262)
                      ...+..+               +.|++||+.......  ....|...|.+++|+|++          .++++++.||.|+
T Consensus       118 ~~~v~~v~~sp~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~  197 (343)
T 2xzm_R          118 QSEVYSVAFSPDNRQILSAGAEREIKLWNILGECKFSSAEKENHSDWVSCVRYSPIMKSANKVQPFAPYFASVGWDGRLK  197 (343)
T ss_dssp             CSCEEEEEECSSTTEEEEEETTSCEEEEESSSCEEEECCTTTSCSSCEEEEEECCCCCSCSCCCSSCCEEEEEETTSEEE
T ss_pred             CCcEEEEEECCCCCEEEEEcCCCEEEEEeccCCceeeeecccCCCceeeeeeeccccccccccCCCCCEEEEEcCCCEEE
Confidence            4333322               289999997432222  223788999999999986          7899999999999


Q ss_pred             EEECCCCeeeeeeecCCCCeeeEEEccCCCEEEEEeCCCeEEEEeCCC--------------------CCccEEEEEcCC
Q 042146          126 IWDIKTGKCLKVLPAHSDPVTAIDFNRDGTMIVTSSYDGLYRILDAST--------------------PNGKFILVGTLD  185 (262)
Q Consensus       126 vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~d~~~--------------------~~~~~l~~~~~d  185 (262)
                      +|| ...+....+.+|...|.+++|+|++++|++++.||.|++||++.                    |++.+++++ .|
T Consensus       198 iwd-~~~~~~~~~~~h~~~v~~~~~s~~g~~l~sgs~dg~v~iwd~~~~~~~~~~~~~~~~v~~v~~sp~~~~la~~-~d  275 (343)
T 2xzm_R          198 VWN-TNFQIRYTFKAHESNVNHLSISPNGKYIATGGKDKKLLIWDILNLTYPQREFDAGSTINQIAFNPKLQWVAVG-TD  275 (343)
T ss_dssp             EEE-TTTEEEEEEECCSSCEEEEEECTTSSEEEEEETTCEEEEEESSCCSSCSEEEECSSCEEEEEECSSSCEEEEE-ES
T ss_pred             EEc-CCCceeEEEcCccccceEEEECCCCCEEEEEcCCCeEEEEECCCCcccceeecCCCcEEEEEECCCCCEEEEE-CC
Confidence            999 45667778889999999999999999999999999999999843                    677776655 57


Q ss_pred             CeEEEEecCCCceee--EEe-----------ccCCceeEEEEEEecCCCeeEEcccc
Q 042146          186 NTLRLWNYSTRKILK--TYS-----------GYTNSKYCISSTFSVTNGKYIVSHRD  229 (262)
Q Consensus       186 g~i~i~d~~~~~~~~--~~~-----------~~~~~~~~~~~~~~~~~~~~~~~~~~  229 (262)
                      +.|++||+.+++...  .+.           +|..  ....+.|++....++.+..+
T Consensus       276 ~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~v~~~~~sp~g~~l~sg~~D  330 (343)
T 2xzm_R          276 QGVKIFNLMTQSKAPVCTIEAEPITKAEGQKGKNP--QCTSLAWNALGKKLFAGFTD  330 (343)
T ss_dssp             SCEEEEESSSCCSCSEEECCCCSGGGBTTBCCSCC--CEEEEEECSSSCCEEEEETT
T ss_pred             CCEEEEEeCCCCCCceEEeecCcchhhhhhcCCCC--ceEEEEECCCCCeEEEecCC
Confidence            789999998876544  333           2222  34556777666666655433

>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}

Probab=99.97  E-value=2.2e-30  Score=204.03  Aligned_cols=197  Identities=19%  Similarity=0.273  Sum_probs=146.7

Q ss_pred             CCCCceeeecc---cc-cceecccCcCceEEEEEccCCCeEEEecCCCeEEEeecCCCCCCCCCCCCCCccccCCccccc
Q 042146            2 SSDRSLESFRP---YT-LTQTLNGHLRAVSYVKFSHDGRLLTSSSAEKTLLTYSLSSISNFDSTPPSPLQKFTGHEQGIS   77 (262)
Q Consensus         2 s~d~~i~~~~~---~~-~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~   77 (262)
                      +.|+.|..|+.   .. ....+.+|.++|++++|+|++++|++++.||.|++||+..                       
T Consensus        61 ~~dg~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~v~iwd~~~-----------------------  117 (368)
T 3mmy_A           61 SWANDVRCWEVQDSGQTIPKAQQMHTGPVLDVCWSDDGSKVFTASCDKTAKMWDLSS-----------------------  117 (368)
T ss_dssp             ETTSEEEEEEECTTSCEEEEEEEECSSCEEEEEECTTSSEEEEEETTSEEEEEETTT-----------------------
T ss_pred             CCCCcEEEEEcCCCCceeEEEeccccCCEEEEEECcCCCEEEEEcCCCcEEEEEcCC-----------------------
Confidence            35888888863   22 3378889999999999999999999999999999986643                       


Q ss_pred             cceeEEEEecCCCccceecccCCcceEEEEE--eCCCCEEEeecCCCeEEEEECCCCeeeeeeecCC-------------
Q 042146           78 DLATIRLWDVPTATSLKTLIGHTNYVFCINF--NPQSNRIVSDTFNETIRIWDIKTGKCLKVLPAHS-------------  142 (262)
Q Consensus        78 ~~~~i~v~d~~~~~~~~~~~~~~~~v~~~~~--~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~-------------  142 (262)
                                  ++.+. +..|...|.+++|  +|++++|++++.||.|++||+++++++..+..+.             
T Consensus       118 ------------~~~~~-~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~  184 (368)
T 3mmy_A          118 ------------NQAIQ-IAQHDAPVKTIHWIKAPNYSCVMTGSWDKTLKFWDTRSSNPMMVLQLPERCYCADVIYPMAV  184 (368)
T ss_dssp             ------------TEEEE-EEECSSCEEEEEEEECSSCEEEEEEETTSEEEEECSSCSSCSEEEECSSCEEEEEEETTEEE
T ss_pred             ------------CCcee-eccccCceEEEEEEeCCCCCEEEEccCCCcEEEEECCCCcEEEEEecCCCceEEEecCCeeE
Confidence                        33332 4568999999999  8899999999999999999999888777665443             


Q ss_pred             ----------------------------CCeeeEEEccCCCE----EEEEeCCCeEEEEeCCC-----------------
Q 042146          143 ----------------------------DPVTAIDFNRDGTM----IVTSSYDGLYRILDAST-----------------  173 (262)
Q Consensus       143 ----------------------------~~v~~~~~~~~~~~----l~~~~~dg~i~~~d~~~-----------------  173 (262)
                                                  ..+.++.+.++...    +++++.||.|++||++.                 
T Consensus       185 ~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~  264 (368)
T 3mmy_A          185 VATAERGLIVYQLENQPSEFRRIESPLKHQHRCVAIFKDKQNKPTGFALGSIEGRVAIHYINPPNPAKDNFTFKCHRSNG  264 (368)
T ss_dssp             EEEGGGCEEEEECSSSCEEEEECCCSCSSCEEEEEEEECTTSCEEEEEEEETTSEEEEEESSCSCHHHHSEEEECSEEC-
T ss_pred             EEeCCCcEEEEEeccccchhhhccccccCCCceEEEcccCCCCCCeEEEecCCCcEEEEecCCCCccccceeeeeeeccc
Confidence                                        22333333333322    66666666666666543                 


Q ss_pred             ------------------CCccEEEEEcCCCeEEEEecCCCceeeEEeccCCceeEEEEEEecCCCeeEEccccceEEEE
Q 042146          174 ------------------PNGKFILVGTLDNTLRLWNYSTRKILKTYSGYTNSKYCISSTFSVTNGKYIVSHRDPVISVA  235 (262)
Q Consensus       174 ------------------~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~  235 (262)
                                        |++++|++|+.||.|++||+++++++..+..                      |..+|.+++
T Consensus       265 ~~~~~~~~~~~v~~~~~sp~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~----------------------~~~~v~~~~  322 (368)
T 3mmy_A          265 TNTSAPQDIYAVNGIAFHPVHGTLATVGSDGRFSFWDKDARTKLKTSEQ----------------------LDQPISACC  322 (368)
T ss_dssp             ---CCCEEECCEEEEEECTTTCCEEEEETTSCEEEEETTTTEEEEECCC----------------------CSSCEEEEE
T ss_pred             ccccccccccceEEEEEecCCCEEEEEccCCeEEEEECCCCcEEEEecC----------------------CCCCceEEE
Confidence                              4556666666666666666666666666554                      888999999


Q ss_pred             EcCCCCeEEEeeecCCCcEEEEe
Q 042146          236 SHPAKNIIASGALDNDRTMKIWT  258 (262)
Q Consensus       236 ~~p~~~~l~~~~~d~d~~i~iw~  258 (262)
                      |+|++++|++++  .|+..+.|+
T Consensus       323 ~s~~g~~l~~~s--~d~~~~~~~  343 (368)
T 3mmy_A          323 FNHNGNIFAYAS--SYDWSKGHE  343 (368)
T ss_dssp             ECTTSSCEEEEE--CCCSTTCGG
T ss_pred             ECCCCCeEEEEe--ccccccccc
Confidence            999999999999  776555444

>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A

Probab=99.97  E-value=7.1e-30  Score=199.57  Aligned_cols=223  Identities=17%  Similarity=0.178  Sum_probs=175.8

Q ss_pred             CCCCceeeecc--cc---cceecccCcCceEEEEEccCCC-eEEEecCCCeEEEeec-CCCCCCCCC---CCCCCccccC
Q 042146            2 SSDRSLESFRP--YT---LTQTLNGHLRAVSYVKFSHDGR-LLTSSSAEKTLLTYSL-SSISNFDST---PPSPLQKFTG   71 (262)
Q Consensus         2 s~d~~i~~~~~--~~---~~~~~~~h~~~v~~~~~~~~~~-~l~s~~~d~~i~iw~~-~~~~~~~~~---~~~~~~~~~~   71 (262)
                      +.|++|..|+.  ..   ....+.+|..+|.+++|+|+++ +|++|+.||.|++||+ .........   ....+..+..
T Consensus        30 ~~d~~v~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~v~~l~~  109 (342)
T 1yfq_A           30 SWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCCNFIDNTDLQIYVGTVQGEILKVDLIGSPSFQALTNNEANLGICRICK  109 (342)
T ss_dssp             ETTSEEEEEEEETTTTEEEEEEEEECSSCEEEEEEEESSSEEEEEEETTSCEEEECSSSSSSEEECBSCCCCSCEEEEEE
T ss_pred             cCCCeEEEEEeCCCCccccceeeeecCCceEEEEECCCCCcEEEEEcCCCeEEEEEeccCCceEeccccCCCCceEEEEe
Confidence            36888888863  22   2456668999999999999999 9999999999999998 664321111   1111111111


Q ss_pred             C-cccc---ccceeEEEEecCC---------CccceecccCCcceEEEEEeCCCCEEEeecCCCeEEEEECCC-Ce--ee
Q 042146           72 H-EQGI---SDLATIRLWDVPT---------ATSLKTLIGHTNYVFCINFNPQSNRIVSDTFNETIRIWDIKT-GK--CL  135 (262)
Q Consensus        72 ~-~~~v---~~~~~i~v~d~~~---------~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~-~~--~~  135 (262)
                      . ...+   ...+.|++||+.+         ++++..+. |...|.+++|+|++  +++++.|+.|++||+++ +.  ..
T Consensus       110 ~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~-~~~~v~~~~~~~~~--l~~~~~d~~i~i~d~~~~~~~~~~  186 (342)
T 1yfq_A          110 YGDDKLIAASWDGLIEVIDPRNYGDGVIAVKNLNSNNTK-VKNKIFTMDTNSSR--LIVGMNNSQVQWFRLPLCEDDNGT  186 (342)
T ss_dssp             ETTTEEEEEETTSEEEEECHHHHTTBCEEEEESCSSSSS-SCCCEEEEEECSSE--EEEEESTTEEEEEESSCCTTCCCE
T ss_pred             CCCCEEEEEcCCCeEEEEcccccccccccccCCeeeEEe-eCCceEEEEecCCc--EEEEeCCCeEEEEECCccccccce
Confidence            1 1111   1223899999987         77777776 88999999999887  89999999999999988 44  23


Q ss_pred             eeeecCCCCeeeEEEcc-CCCEEEEEeCCCeEEEEeCCC-----------------------------------CCccEE
Q 042146          136 KVLPAHSDPVTAIDFNR-DGTMIVTSSYDGLYRILDAST-----------------------------------PNGKFI  179 (262)
Q Consensus       136 ~~~~~~~~~v~~~~~~~-~~~~l~~~~~dg~i~~~d~~~-----------------------------------~~~~~l  179 (262)
                      .....|...+.+++|+| +++++++++.||.|++|+++.                                   |++++|
T Consensus       187 ~~~~~~~~~i~~i~~~~~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l  266 (342)
T 1yfq_A          187 IEESGLKYQIRDVALLPKEQEGYACSSIDGRVAVEFFDDQGDDYNSSKRFAFRCHRLNLKDTNLAYPVNSIEFSPRHKFL  266 (342)
T ss_dssp             EEECSCSSCEEEEEECSGGGCEEEEEETTSEEEEEECCTTCCSTTCTTCEEEECCCCCTTCCSSCCCEEEEEECTTTCCE
T ss_pred             eeecCCCCceeEEEECCCCCCEEEEEecCCcEEEEEEcCCCcccccccceeeecccccccccccceeEEEEEEcCCCCEE
Confidence            34456788999999999 999999999999999988631                                   578899


Q ss_pred             EEEcCCCeEEEEecCCCceeeEEeccCCceeEEEEEEecCCCeeEEcc-ccceEEEEEcCCCCeEEEeeecCCCc
Q 042146          180 LVGTLDNTLRLWNYSTRKILKTYSGYTNSKYCISSTFSVTNGKYIVSH-RDPVISVASHPAKNIIASGALDNDRT  253 (262)
Q Consensus       180 ~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~v~~~~~~p~~~~l~~~~~d~d~~  253 (262)
                      ++++.||.|++||+++++++..+..                      | ..+|.+++  |++++|++++  .||.
T Consensus       267 ~~~~~dg~i~vwd~~~~~~~~~~~~----------------------~h~~~v~~~~--~~~~~l~s~s--~Dg~  315 (342)
T 1yfq_A          267 YTAGSDGIISCWNLQTRKKIKNFAK----------------------FNEDSVVKIA--CSDNILCLAT--SDDT  315 (342)
T ss_dssp             EEEETTSCEEEEETTTTEEEEECCC----------------------CSSSEEEEEE--ECSSEEEEEE--ECTH
T ss_pred             EEecCCceEEEEcCccHhHhhhhhc----------------------ccCCCceEec--CCCCeEEEEe--cCCc
Confidence            9999999999999999999988876                      6 88999999  9999999999  7888

>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}

Probab=99.97  E-value=9.8e-30  Score=203.31  Aligned_cols=214  Identities=20%  Similarity=0.335  Sum_probs=167.2

Q ss_pred             cCcCc--eEEEEEccCCCeEEEecCCCeEEEeecCCCCCCCCC---CCCCCccccCC--cccc---ccceeEEEEecCCC
Q 042146           21 GHLRA--VSYVKFSHDGRLLTSSSAEKTLLTYSLSSISNFDST---PPSPLQKFTGH--EQGI---SDLATIRLWDVPTA   90 (262)
Q Consensus        21 ~h~~~--v~~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~---~~~~~~~~~~~--~~~v---~~~~~i~v~d~~~~   90 (262)
                      +|...  +.+++|++  ..+++++.|+.|++||+.........   ....+..+...  ...+   ...+.|++||+.++
T Consensus        89 ~~~~~~~~~~~~~s~--~~l~~~~~d~~v~lw~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~  166 (401)
T 4aez_A           89 GIIDDYYLNLLDWSN--LNVVAVALERNVYVWNADSGSVSALAETDESTYVASVKWSHDGSFLSVGLGNGLVDIYDVESQ  166 (401)
T ss_dssp             TCCCCTTCBCEEECT--TSEEEEEETTEEEEEETTTCCEEEEEECCTTCCEEEEEECTTSSEEEEEETTSCEEEEETTTC
T ss_pred             CCcCCceEEEEeecC--CCEEEEECCCeEEEeeCCCCcEeEeeecCCCCCEEEEEECCCCCEEEEECCCCeEEEEECcCC
Confidence            55554  44466654  56888999999999998764322111   11111111111  1111   12338999999999


Q ss_pred             ccceecccCCcceEEEEEeCCCCEEEeecCCCeEEEEECC-CCeeeeeeecCCCCeeeEEEccCCCEEEEEeCCCeEEEE
Q 042146           91 TSLKTLIGHTNYVFCINFNPQSNRIVSDTFNETIRIWDIK-TGKCLKVLPAHSDPVTAIDFNRDGTMIVTSSYDGLYRIL  169 (262)
Q Consensus        91 ~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~-~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~  169 (262)
                      +.+..+.+|...|.+++|+  ++++++++.||.|++||++ ....+..+..|.+.|.+++|+|++++|++++.|+.|++|
T Consensus       167 ~~~~~~~~~~~~v~~~~~~--~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~v~iw  244 (401)
T 4aez_A          167 TKLRTMAGHQARVGCLSWN--RHVLSSGSRSGAIHHHDVRIANHQIGTLQGHSSEVCGLAWRSDGLQLASGGNDNVVQIW  244 (401)
T ss_dssp             CEEEEECCCSSCEEEEEEE--TTEEEEEETTSEEEEEETTSSSCEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEE
T ss_pred             eEEEEecCCCCceEEEEEC--CCEEEEEcCCCCEEEEecccCcceeeEEcCCCCCeeEEEEcCCCCEEEEEeCCCeEEEc
Confidence            9999999999999999995  6799999999999999998 566788888999999999999999999999999999999


Q ss_pred             eCCC--------------------CCc-cEEEEEc--CCCeEEEEecCCCceeeEEeccCCceeEEEEEEecCCCeeEEc
Q 042146          170 DAST--------------------PNG-KFILVGT--LDNTLRLWNYSTRKILKTYSGYTNSKYCISSTFSVTNGKYIVS  226 (262)
Q Consensus       170 d~~~--------------------~~~-~~l~~~~--~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  226 (262)
                      |++.                    |++ .++++++  .|+.|++||+++++++..+.                       
T Consensus       245 d~~~~~~~~~~~~~~~~v~~~~~~p~~~~ll~~~~gs~d~~i~i~d~~~~~~~~~~~-----------------------  301 (401)
T 4aez_A          245 DARSSIPKFTKTNHNAAVKAVAWCPWQSNLLATGGGTMDKQIHFWNAATGARVNTVD-----------------------  301 (401)
T ss_dssp             ETTCSSEEEEECCCSSCCCEEEECTTSTTEEEEECCTTTCEEEEEETTTCCEEEEEE-----------------------
T ss_pred             cCCCCCccEEecCCcceEEEEEECCCCCCEEEEecCCCCCEEEEEECCCCCEEEEEe-----------------------
Confidence            9986                    544 5666654  79999999999999888876                       


Q ss_pred             cccceEEEEEcCCCCeEEEeeecCCCcEEEEeecc
Q 042146          227 HRDPVISVASHPAKNIIASGALDNDRTMKIWTQEK  261 (262)
Q Consensus       227 ~~~~v~~~~~~p~~~~l~~~~~d~d~~i~iw~~~~  261 (262)
                      +...|.+++|+|+++.|++++...||.|++|++..
T Consensus       302 ~~~~v~~~~~s~~~~~l~~~~g~~dg~i~v~~~~~  336 (401)
T 4aez_A          302 AGSQVTSLIWSPHSKEIMSTHGFPDNNLSIWSYSS  336 (401)
T ss_dssp             CSSCEEEEEECSSSSEEEEEECTTTCEEEEEEEET
T ss_pred             CCCcEEEEEECCCCCeEEEEeecCCCcEEEEecCC
Confidence            66789999999999999994321699999999864

>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae}

Probab=99.97  E-value=3e-29  Score=203.41  Aligned_cols=217  Identities=13%  Similarity=0.154  Sum_probs=163.6

Q ss_pred             cCcCceEEEEEccCCCeE-EEecCCCeEEEeecC--CCCCCCCC----CCCCCccc--cCCccccc---cceeEEEEecC
Q 042146           21 GHLRAVSYVKFSHDGRLL-TSSSAEKTLLTYSLS--SISNFDST----PPSPLQKF--TGHEQGIS---DLATIRLWDVP   88 (262)
Q Consensus        21 ~h~~~v~~~~~~~~~~~l-~s~~~d~~i~iw~~~--~~~~~~~~----~~~~~~~~--~~~~~~v~---~~~~i~v~d~~   88 (262)
                      +|.+.|++++|+|++++| ++++.||.|++||+.  ........    ....+..+  ......+.   ..+.+++|++.
T Consensus       100 ~~~~~v~~~~~s~d~~~l~~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~~g~v~~~~~~  179 (450)
T 2vdu_B          100 PIYSYIRNLRLTSDESRLIACADSDKSLLVFDVDKTSKNVLKLRKRFCFSKRPNAISIAEDDTTVIIADKFGDVYSIDIN  179 (450)
T ss_dssp             CCCCCEEEEEECTTSSEEEEEEGGGTEEEEEEECSSSSSCEEEEEEEECSSCEEEEEECTTSSEEEEEETTSEEEEEETT
T ss_pred             ccCCceEEEEEcCCCCEEEEEECCCCeEEEEECcCCCCceeeeeecccCCCCceEEEEcCCCCEEEEEeCCCcEEEEecC
Confidence            456689999999999996 899999999999987  43221111    01111111  11111111   12269999998


Q ss_pred             CCccce----ecccCCcceEEEEEeCC---CCEEEeecCCCeEEEEECCCCeeeee-eecCCCCeeeEEEccCCCEEEEE
Q 042146           89 TATSLK----TLIGHTNYVFCINFNPQ---SNRIVSDTFNETIRIWDIKTGKCLKV-LPAHSDPVTAIDFNRDGTMIVTS  160 (262)
Q Consensus        89 ~~~~~~----~~~~~~~~v~~~~~~~~---~~~l~~~~~dg~i~vwd~~~~~~~~~-~~~~~~~v~~~~~~~~~~~l~~~  160 (262)
                      +++...    .+.+|...|.+++|+|+   +++|++|+.|+.|++||+++++.+.. +.+|...|.+++|+ ++++|+++
T Consensus       180 ~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~h~~~v~~~~~s-d~~~l~s~  258 (450)
T 2vdu_B          180 SIPEEKFTQEPILGHVSMLTDVHLIKDSDGHQFIITSDRDEHIKISHYPQCFIVDKWLFGHKHFVSSICCG-KDYLLLSA  258 (450)
T ss_dssp             SCCCSSCCCCCSEECSSCEEEEEEEECTTSCEEEEEEETTSCEEEEEESCTTCEEEECCCCSSCEEEEEEC-STTEEEEE
T ss_pred             CcccccccceeeecccCceEEEEEcCCCCCCcEEEEEcCCCcEEEEECCCCceeeeeecCCCCceEEEEEC-CCCEEEEE
Confidence            877554    77889999999999999   99999999999999999999888777 56899999999999 99999999


Q ss_pred             eCCCeEEEEeCCC---------------------------------------------CCccEEEEEc-CCCeEEEEec-
Q 042146          161 SYDGLYRILDAST---------------------------------------------PNGKFILVGT-LDNTLRLWNY-  193 (262)
Q Consensus       161 ~~dg~i~~~d~~~---------------------------------------------~~~~~l~~~~-~dg~i~i~d~-  193 (262)
                      +.|+.|++||++.                                             +++++|++++ .++.|++|++ 
T Consensus       259 ~~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~~d~~i~iw~~~  338 (450)
T 2vdu_B          259 GGDDKIFAWDWKTGKNLSTFDYNSLIKPYLNDQHLAPPRFQNENNDIIEFAVSKIIKSKNLPFVAFFVEATKCIIILEMS  338 (450)
T ss_dssp             ESSSEEEEEETTTCCEEEEEECHHHHGGGCCTTSBC----------CBCCCEEEEEECSSSSEEEEEETTCSEEEEEEEC
T ss_pred             eCCCeEEEEECCCCcEeeeecchhhhhhhhhhcccccccccccccccceEEEEEEEEeCCCCEEEEEECCCCeEEEEEec
Confidence            9999999999876                                             1377888888 8999999999 


Q ss_pred             -CCC---ceeeEEeccCCceeEEEEEEecCCCeeEEccccceEEEEEcCCCCeEEEeeec----CCCcEEEEeecc
Q 042146          194 -STR---KILKTYSGYTNSKYCISSTFSVTNGKYIVSHRDPVISVASHPAKNIIASGALD----NDRTMKIWTQEK  261 (262)
Q Consensus       194 -~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~d----~d~~i~iw~~~~  261 (262)
                       ..+   +.+..+..                      | ..|.+++|+|++.++++++.+    .+..|++|.++.
T Consensus       339 ~~~~~~l~~~~~~~~----------------------~-~~v~~~~~~~~~~~v~~~~~~~~~~~~~~i~v~~~~~  391 (450)
T 2vdu_B          339 EKQKGDLALKQIITF----------------------P-YNVISLSAHNDEFQVTLDNKESSGVQKNFAKFIEYNL  391 (450)
T ss_dssp             SSSTTCEEEEEEEEC----------------------S-SCEEEEEEETTEEEEEECCTTCCSSCCCSEEEEEEET
T ss_pred             cCCCCceeeccEecc----------------------C-CceEEEEecCCcEEEEEecccCCCCCCcceEEEEEEc
Confidence             555   55555554                      5 789999999965444444310    145689998753

>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A

Probab=99.97  E-value=3.8e-30  Score=199.34  Aligned_cols=193  Identities=24%  Similarity=0.281  Sum_probs=149.2

Q ss_pred             CCCCceeeeccc----ccceecccCcCceEEEEEcc--CCCeEEEecCCCeEEEeecCCCCCCC----CCCCCCCccccC
Q 042146            2 SSDRSLESFRPY----TLTQTLNGHLRAVSYVKFSH--DGRLLTSSSAEKTLLTYSLSSISNFD----STPPSPLQKFTG   71 (262)
Q Consensus         2 s~d~~i~~~~~~----~~~~~~~~h~~~v~~~~~~~--~~~~l~s~~~d~~i~iw~~~~~~~~~----~~~~~~~~~~~~   71 (262)
                      +.|++++.|+..    ..+..+.+|.++|.+++|+|  ++++|++|+.|++|++||++......    ......+..+..
T Consensus        32 s~D~~v~lwd~~~~~~~~~~~l~gH~~~V~~v~~~~~~~~~~l~s~s~D~~v~iWd~~~~~~~~~~~~~~h~~~V~~v~~  111 (316)
T 3bg1_A           32 SSDRSVKIFDVRNGGQILIADLRGHEGPVWQVAWAHPMYGNILASCSYDRKVIIWREENGTWEKSHEHAGHDSSVNSVCW  111 (316)
T ss_dssp             ETTTEEEEEEEETTEEEEEEEEECCSSCEEEEEECCGGGSSCEEEEETTSCEEEECCSSSCCCEEEEECCCSSCCCEEEE
T ss_pred             eCCCeEEEEEecCCCcEEEEEEcCCCccEEEEEeCCCCCCCEEEEEECCCEEEEEECCCCcceEEEEccCCCCceEEEEE
Confidence            468999998732    25678899999999999986  48999999999999999987532100    001111111111


Q ss_pred             Cc---cc-c---ccceeEEEEecCCCcc---ceecccCCcceEEEEEeCC-----------------CCEEEeecCCCeE
Q 042146           72 HE---QG-I---SDLATIRLWDVPTATS---LKTLIGHTNYVFCINFNPQ-----------------SNRIVSDTFNETI  124 (262)
Q Consensus        72 ~~---~~-v---~~~~~i~v~d~~~~~~---~~~~~~~~~~v~~~~~~~~-----------------~~~l~~~~~dg~i  124 (262)
                      +.   .. +   ...+.|++||+..+..   ...+.+|...|.+++|+|+                 +++|++|+.|+.|
T Consensus       112 ~p~~~g~~lasgs~D~~i~lwd~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sgs~D~~v  191 (316)
T 3bg1_A          112 APHDYGLILACGSSDGAISLLTYTGEGQWEVKKINNAHTIGCNAVSWAPAVVPGSLIDHPSGQKPNYIKRFASGGCDNLI  191 (316)
T ss_dssp             CCTTTCSCEEEECSSSCEEEEEECSSSCEEECCBTTSSSSCBCCCEECCCCCC------CCSCCCCCCCBEECCBTTSBC
T ss_pred             CCCCCCcEEEEEcCCCCEEEEecCCCCCcceeeeeccccCCcceEEEccccCCccccccccccCccccceEEEecCCCeE
Confidence            11   11 1   1233899999987632   4556789999999999997                 4789999999999


Q ss_pred             EEEECCCC---eeeeeeecCCCCeeeEEEccCC----CEEEEEeCCCeEEEEeCCC------------------------
Q 042146          125 RIWDIKTG---KCLKVLPAHSDPVTAIDFNRDG----TMIVTSSYDGLYRILDAST------------------------  173 (262)
Q Consensus       125 ~vwd~~~~---~~~~~~~~~~~~v~~~~~~~~~----~~l~~~~~dg~i~~~d~~~------------------------  173 (262)
                      ++||++..   +++..+.+|...|.+++|+|++    .+|++++.|++|++||+..                        
T Consensus       192 ~lWd~~~~~~~~~~~~l~~h~~~V~~v~~sp~~~~~~~~las~s~D~~v~iw~~~~~~~~~~~~~~~~~~~~~v~~v~~s  271 (316)
T 3bg1_A          192 KLWKEEEDGQWKEEQKLEAHSDWVRDVAWAPSIGLPTSTIASCSQDGRVFIWTCDDASSNTWSPKLLHKFNDVVWHVSWS  271 (316)
T ss_dssp             CEEEECTTSCEEEEECCBCCSSCEEEEECCCCSSCSCCEEEEEETTCEEEEEECSSTTCCCCBCCEEEECSSCEEEEEEC
T ss_pred             EEEEeCCCCccceeeecccCCCceEEEEecCCCCCCCceEEEEcCCCeEEEEEccCccccchhhhhhhcCCCcEEEEEEc
Confidence            99999755   4677788999999999999986    7899999999999998642                        


Q ss_pred             CCccEEEEEcCCCeEEEEecC
Q 042146          174 PNGKFILVGTLDNTLRLWNYS  194 (262)
Q Consensus       174 ~~~~~l~~~~~dg~i~i~d~~  194 (262)
                      |++++|++++.|+.|++|+..
T Consensus       272 p~g~~las~~~D~~v~lw~~~  292 (316)
T 3bg1_A          272 ITANILAVSGGDNKVTLWKES  292 (316)
T ss_dssp             TTTCCEEEEESSSCEEEEEEC
T ss_pred             CCCCEEEEEcCCCeEEEEEEC
Confidence            788999999999999999976

>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*

Probab=99.97  E-value=8.9e-30  Score=205.65  Aligned_cols=226  Identities=17%  Similarity=0.207  Sum_probs=162.1

Q ss_pred             CCCCceeeecc--c--ccceecccCcCceEEEEEcc-CCCeEEEecCCCeEEEeecCCCCCCC--C--CCCCCCccc--c
Q 042146            2 SSDRSLESFRP--Y--TLTQTLNGHLRAVSYVKFSH-DGRLLTSSSAEKTLLTYSLSSISNFD--S--TPPSPLQKF--T   70 (262)
Q Consensus         2 s~d~~i~~~~~--~--~~~~~~~~h~~~v~~~~~~~-~~~~l~s~~~d~~i~iw~~~~~~~~~--~--~~~~~~~~~--~   70 (262)
                      +.||+|..|+.  .  .....+.+|.++|++++|+| ++++|++|+.||+|++||++......  .  ........+  .
T Consensus       139 s~dg~i~lWd~~~~~~~~~~~~~gH~~~V~~l~f~p~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~  218 (435)
T 4e54_B          139 SKGGDIMLWNFGIKDKPTFIKGIGAGGSITGLKFNPLNTNQFYASSMEGTTRLQDFKGNILRVFASSDTINIWFCSLDVS  218 (435)
T ss_dssp             ETTSCEEEECSSCCSCCEEECCCSSSCCCCEEEECSSCTTEEEEECSSSCEEEEETTSCEEEEEECCSSCSCCCCCEEEE
T ss_pred             eCCCEEEEEECCCCCceeEEEccCCCCCEEEEEEeCCCCCEEEEEeCCCEEEEeeccCCceeEEeccCCCCccEEEEEEC
Confidence            46899999863  2  23455678999999999998 68899999999999999987532110  0  001111111  1


Q ss_pred             CCcccc---ccceeEEEEecCCCccceecccCCcceEEEEEeCCCC-EEEeecCCCeEEEEECCCCeeeee---eecCCC
Q 042146           71 GHEQGI---SDLATIRLWDVPTATSLKTLIGHTNYVFCINFNPQSN-RIVSDTFNETIRIWDIKTGKCLKV---LPAHSD  143 (262)
Q Consensus        71 ~~~~~v---~~~~~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~~~~~dg~i~vwd~~~~~~~~~---~~~~~~  143 (262)
                      .....+   ...+.|++||++ ++.+..+.+|...|.+++|+|+++ ++++|+.|+.|++||+++.+....   ..+|..
T Consensus       219 ~~~~~l~~g~~dg~i~~wd~~-~~~~~~~~~h~~~v~~v~~~p~~~~~~~s~s~d~~v~iwd~~~~~~~~~~~~~~~h~~  297 (435)
T 4e54_B          219 ASSRMVVTGDNVGNVILLNMD-GKELWNLRMHKKKVTHVALNPCCDWFLATASVDQTVKIWDLRQVRGKASFLYSLPHRH  297 (435)
T ss_dssp             TTTTEEEEECSSSBEEEEESS-SCBCCCSBCCSSCEEEEEECTTCSSEEEEEETTSBCCEEETTTCCSSSCCSBCCBCSS
T ss_pred             CCCCEEEEEeCCCcEeeeccC-cceeEEEecccceEEeeeecCCCceEEEEecCcceeeEEecccccccceEEEeeeccc
Confidence            111111   123389999985 567778899999999999999876 688999999999999987654433   357899


Q ss_pred             CeeeEEEccCCCEEEEEeCCCeEEEEeCCC--------------------------CCccEEEEEc------------CC
Q 042146          144 PVTAIDFNRDGTMIVTSSYDGLYRILDAST--------------------------PNGKFILVGT------------LD  185 (262)
Q Consensus       144 ~v~~~~~~~~~~~l~~~~~dg~i~~~d~~~--------------------------~~~~~l~~~~------------~d  185 (262)
                      +|++++|+|++++|++++.||.|++||++.                          +++.+++++.            .+
T Consensus       298 ~v~~~~~spdg~~l~s~~~D~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~  377 (435)
T 4e54_B          298 PVNAACFSPDGARLLTTDQKSEIRVYSASQWDCPLGLIPHPHRHFQHLTPIKAAWHPRYNLIVVGRYPDPNFKSCTPYEL  377 (435)
T ss_dssp             CEEECCBCTTSSEEEEEESSSCEEEEESSSSSSEEEECCCCCCCCSSSCCCBCEECSSSSCEEEECCCCTTSCCSSTTCC
T ss_pred             cccceeECCCCCeeEEEcCCCEEEEEECCCCccceEEecccccccccceeEEEEEcCCCCEEEEEEcCCCCeEEEEecCC
Confidence            999999999999999999999999999875                          3445566553            33


Q ss_pred             CeEEEEecCCCceeeEEec-cCCceeEEEEEEecCCCeeEEcccc
Q 042146          186 NTLRLWNYSTRKILKTYSG-YTNSKYCISSTFSVTNGKYIVSHRD  229 (262)
Q Consensus       186 g~i~i~d~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~  229 (262)
                      +.|++||..+++++..+.. |...+.++ ..|++....+..+..+
T Consensus       378 ~~i~iwd~~~g~~~~~l~~~~~~~v~s~-~~fspdg~~lasg~d~  421 (435)
T 4e54_B          378 RTIDVFDGNSGKMMCQLYDPESSGISSL-NEFNPMGDTLASAMGY  421 (435)
T ss_dssp             CCEEEECSSSCCEEEEECCSSCCCCCCE-EEECTTSSCEEEECSS
T ss_pred             CEEEEEECCCCcEEEEEeCCCCCcEEEE-EEECCCCCEEEEEcCC
Confidence            5799999999999888754 44444433 2355444444444433

>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}

Probab=99.97  E-value=3.2e-29  Score=198.23  Aligned_cols=259  Identities=17%  Similarity=0.220  Sum_probs=180.4

Q ss_pred             CCCceeeec----ccccceecccCcCceEEEEEccC--CCeEEEecCCCeEEEeecCCCC--CCC--CCCCCCCccccCC
Q 042146            3 SDRSLESFR----PYTLTQTLNGHLRAVSYVKFSHD--GRLLTSSSAEKTLLTYSLSSIS--NFD--STPPSPLQKFTGH   72 (262)
Q Consensus         3 ~d~~i~~~~----~~~~~~~~~~h~~~v~~~~~~~~--~~~l~s~~~d~~i~iw~~~~~~--~~~--~~~~~~~~~~~~~   72 (262)
                      .|++|..|+    ..+....+.+|.++|++++|+|+  +++|++++.||.|++||+....  ...  ......+..+..+
T Consensus        31 ~dg~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~  110 (379)
T 3jrp_A           31 SDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVLIWKEENGRWSQIAVHAVHSASVNSVQWA  110 (379)
T ss_dssp             TTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEEC
T ss_pred             CCCcEEEEecCCCcceeeeEecCCCCcEEEEEeCCCCCCCEEEEeccCCEEEEEEcCCCceeEeeeecCCCcceEEEEeC
Confidence            588888886    44677888999999999999987  9999999999999999987642  111  0111112222111


Q ss_pred             cc----cc---ccceeEEEEecCCCc--cceecccCCcceEEEEEeC-------------CCCEEEeecCCCeEEEEECC
Q 042146           73 EQ----GI---SDLATIRLWDVPTAT--SLKTLIGHTNYVFCINFNP-------------QSNRIVSDTFNETIRIWDIK  130 (262)
Q Consensus        73 ~~----~v---~~~~~i~v~d~~~~~--~~~~~~~~~~~v~~~~~~~-------------~~~~l~~~~~dg~i~vwd~~  130 (262)
                      ..    .+   ...+.|++||+.+..  ....+..|...|.+++|+|             +++++++++.||.|++||++
T Consensus       111 ~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~  190 (379)
T 3jrp_A          111 PHEYGPLLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYN  190 (379)
T ss_dssp             CGGGCSEEEEEETTSEEEEEECCTTSCCCEEEEECCTTCEEEEEECCCC----------CTTCEEEEEETTSCEEEEEEE
T ss_pred             CCCCCCEEEEecCCCcEEEEecCCCCceeeEEecCCCCceEEEEEcCccccccccccCCCCCCEEEEEeCCCeEEEEEec
Confidence            11    11   223389999998874  3345678999999999999             69999999999999999998


Q ss_pred             CCe----eeeeeecCCCCeeeEEEccC---CCEEEEEeCCCeEEEEeCCC-------------------------CCccE
Q 042146          131 TGK----CLKVLPAHSDPVTAIDFNRD---GTMIVTSSYDGLYRILDAST-------------------------PNGKF  178 (262)
Q Consensus       131 ~~~----~~~~~~~~~~~v~~~~~~~~---~~~l~~~~~dg~i~~~d~~~-------------------------~~~~~  178 (262)
                      +++    ....+..|...|.+++|+|+   +++|++++.||.|++||++.                         |++++
T Consensus       191 ~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~  270 (379)
T 3jrp_A          191 SDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYLASVSQDRTCIIWTQDNEQGPWKKTLLKEEKFPDVLWRASWSLSGNV  270 (379)
T ss_dssp             TTTTEEEEEEEECCCSSCEEEEEECCCCSSSEEEEEEETTSCEEEEEESSTTSCCEEEESSSSCCSSCEEEEEECSSSCC
T ss_pred             CCCcceeeEEEEecccCcEeEEEECCCCCCCCeEEEEeCCCEEEEEeCCCCCccceeeeeccccCCCcEEEEEEcCCCCE
Confidence            654    45667789999999999999   89999999999999999775                         78999


Q ss_pred             EEEEcCCCeEEEEecCCCceeeEEeccCC--------ceeEEE----------EEEecCCCeeEEc--------cccceE
Q 042146          179 ILVGTLDNTLRLWNYSTRKILKTYSGYTN--------SKYCIS----------STFSVTNGKYIVS--------HRDPVI  232 (262)
Q Consensus       179 l~~~~~dg~i~i~d~~~~~~~~~~~~~~~--------~~~~~~----------~~~~~~~~~~~~~--------~~~~v~  232 (262)
                      |++++.||.|++|++..+.....+.....        ......          ..+..........        ...+..
T Consensus       271 l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  350 (379)
T 3jrp_A          271 LALSGGDNKVTLWKENLEGKWEPAGEVHQGGGGSGGGGATSKEFDGPCQNEIDLLFSECNDEIDNAKLIMKERRFTASYT  350 (379)
T ss_dssp             EEEEESSSSEEEEEEEETTEEEEEEEEC----------------CEEEC--------------CTHHHHHHHTTCCTTCC
T ss_pred             EEEecCCCcEEEEeCCCCCccccccceeccccCCCCCCchheeecccccchhhhhcccccccchhHHhhhhhccccCcce
Confidence            99999999999999985443322221100        000000          0111111100000        224566


Q ss_pred             EEEEcCCCCeEEEeeecCCCcEEEEeeccC
Q 042146          233 SVASHPAKNIIASGALDNDRTMKIWTQEKE  262 (262)
Q Consensus       233 ~~~~~p~~~~l~~~~~d~d~~i~iw~~~~~  262 (262)
                      ...|+|++.+|+.... ....|+.+.+..|
T Consensus       351 ~~~fs~~g~~l~~~~~-~~~~~~~~~~~~~  379 (379)
T 3jrp_A          351 FAKFSTGSMLLTKDIV-GKSGVSIKRLPTE  379 (379)
T ss_dssp             CEEEETTTEEEEECTT-SSSSEEEEECCCC
T ss_pred             eeEECCCCeEeeeccc-ccccEEEEeccCC
Confidence            7889999999877752 2334888887654

>2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}

Probab=99.97  E-value=1e-29  Score=205.36  Aligned_cols=197  Identities=10%  Similarity=0.077  Sum_probs=154.7

Q ss_pred             ccCcCceEEEEEccCCCeEEEecCCCeEEEeecCCCCCCCCCCCCCCccccCCccccccce-----eEEEEecCCCccce
Q 042146           20 NGHLRAVSYVKFSHDGRLLTSSSAEKTLLTYSLSSISNFDSTPPSPLQKFTGHEQGISDLA-----TIRLWDVPTATSLK   94 (262)
Q Consensus        20 ~~h~~~v~~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~-----~i~v~d~~~~~~~~   94 (262)
                      +.-...|.+++|+|||+++|+++.|++|+  |.....           .+.+|...+..++     .++.|++.+++...
T Consensus        12 ~~~~~~v~sv~~SpDG~~iASas~D~TV~--d~~~~~-----------~l~gh~~~v~~V~FsPdg~~~~~~~~~~~~~~   78 (588)
T 2j04_A           12 KEFEDWKNNLTWARDGTLYLTTFPDISIG--QPKYAK-----------DINCNSKNLFHVKEFPLEFENKLDFELAQQNG   78 (588)
T ss_dssp             CCCSSSSCCEEECTTSCEEEECSSSEEEE--EECCCS-----------CCSSBGGGTEEEEEECCCCCCTTTTSCCCSSC
T ss_pred             hHhhccEEEEEECCCCCEEEEEcCCceee--cccccc-----------eecCCCccEEEEEECCCCCcceEEEEeCCCce
Confidence            34568899999999999999999999999  533221           1134555444432     45666666555433


Q ss_pred             ecc-cCCcceEEEEEeCCCCEEEeecCCCeEEEEECCCCeeeeeeecCCC-----CeeeEEEccCCCEEEEEeCCCeEEE
Q 042146           95 TLI-GHTNYVFCINFNPQSNRIVSDTFNETIRIWDIKTGKCLKVLPAHSD-----PVTAIDFNRDGTMIVTSSYDGLYRI  168 (262)
Q Consensus        95 ~~~-~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~-----~v~~~~~~~~~~~l~~~~~dg~i~~  168 (262)
                      .+. .|...|.+++|+|+|.+||+++.||.|++||.+.  ++..+. |..     .+.+++|||+|++|++|+.||+|++
T Consensus        79 ~~~~~~~~~V~~vawSPdG~~LAs~s~dg~V~iwd~~~--~l~~l~-~~~~~~~~sv~svafSPDG~~LAsgs~DGtVkI  155 (588)
T 2j04_A           79 LLNSQPVCYPRVCKPSPIDDWMAVLSNNGNVSVFKDNK--MLTNLD-SKGNLSSRTYHCFEWNPIESSIVVGNEDGELQF  155 (588)
T ss_dssp             SSTTSCSCCEEEEEECSSSSCEEEEETTSCEEEEETTE--EEEECC-CSSCSTTTCEEEEEECSSSSCEEEEETTSEEEE
T ss_pred             EeecCCCCcEEEEEECCCCCEEEEEeCCCcEEEEeCCc--eeeecc-CCCccccccEEEEEEcCCCCEEEEEcCCCEEEE
Confidence            333 4588899999999999999999999999999544  566666 665     4999999999999999999999999


Q ss_pred             EeCCC-------------------------------CCccEEEEEcCCCeEEEEecCCCce---eeEEe-ccCCceeEEE
Q 042146          169 LDAST-------------------------------PNGKFILVGTLDNTLRLWNYSTRKI---LKTYS-GYTNSKYCIS  213 (262)
Q Consensus       169 ~d~~~-------------------------------~~~~~l~~~~~dg~i~i~d~~~~~~---~~~~~-~~~~~~~~~~  213 (262)
                      ||+..                               |++  +++++.|+.|++||+..++.   ..++. +         
T Consensus       156 Wd~~~~~l~~~~~i~l~ti~~~~~gh~~~V~sVawSPdg--Laass~D~tVrlWd~~~~~~~~~~~tL~~~---------  224 (588)
T 2j04_A          156 FSIRKNSENTPEFYFESSIRLSDAGSKDWVTHIVWYEDV--LVAALSNNSVFSMTVSASSHQPVSRMIQNA---------  224 (588)
T ss_dssp             EECCCCTTTCCCCEEEEEEECSCTTCCCCEEEEEEETTE--EEEEETTCCEEEECCCSSSSCCCEEEEECC---------
T ss_pred             EECCCCccccccceeeeeeecccccccccEEEEEEcCCc--EEEEeCCCeEEEEECCCCccccceeeeccc---------
Confidence            99542                               566  88889999999999988773   24453 3         


Q ss_pred             EEEecCCCeeEEccccceEEEEEcCCCCeEEEeeecCCCcEEEEeecc
Q 042146          214 STFSVTNGKYIVSHRDPVISVASHPAKNIIASGALDNDRTMKIWTQEK  261 (262)
Q Consensus       214 ~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~d~d~~i~iw~~~~  261 (262)
                                   |...|.+++|+  ++.||+++   ++.|++|++..
T Consensus       225 -------------h~~~V~svaFs--g~~LASa~---~~tIkLWd~~~  254 (588)
T 2j04_A          225 -------------SRRKITDLKIV--DYKVVLTC---PGYVHKIDLKN  254 (588)
T ss_dssp             -------------CSSCCCCEEEE--TTEEEEEC---SSEEEEEETTT
T ss_pred             -------------ccCcEEEEEEE--CCEEEEEe---CCeEEEEECCC
Confidence                         77899999999  68899886   58999999864

>2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}

Probab=99.97  E-value=2.2e-29  Score=203.43  Aligned_cols=174  Identities=13%  Similarity=0.132  Sum_probs=140.6

Q ss_pred             cCcCceEEEEEccCCCeEEEecCCCeEEEeecCCCCCCCCCCCCCCccccCCccccccceeEEEEecCCCccceecccCC
Q 042146           21 GHLRAVSYVKFSHDGRLLTSSSAEKTLLTYSLSSISNFDSTPPSPLQKFTGHEQGISDLATIRLWDVPTATSLKTLIGHT  100 (262)
Q Consensus        21 ~h~~~v~~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~i~v~d~~~~~~~~~~~~~~  100 (262)
                      .|...|.+++|||+|.+||+++.||.|++||.+                                   .  .+..+. |.
T Consensus        83 ~~~~~V~~vawSPdG~~LAs~s~dg~V~iwd~~-----------------------------------~--~l~~l~-~~  124 (588)
T 2j04_A           83 QPVCYPRVCKPSPIDDWMAVLSNNGNVSVFKDN-----------------------------------K--MLTNLD-SK  124 (588)
T ss_dssp             SCSCCEEEEEECSSSSCEEEEETTSCEEEEETT-----------------------------------E--EEEECC-CS
T ss_pred             CCCCcEEEEEECCCCCEEEEEeCCCcEEEEeCC-----------------------------------c--eeeecc-CC
Confidence            456778888888888888888888888777532                                   1  333344 44


Q ss_pred             c-----ceEEEEEeCCCCEEEeecCCCeEEEEECCCCe-------eeeee----ecCCCCeeeEEEccCCCEEEEEeCCC
Q 042146          101 N-----YVFCINFNPQSNRIVSDTFNETIRIWDIKTGK-------CLKVL----PAHSDPVTAIDFNRDGTMIVTSSYDG  164 (262)
Q Consensus       101 ~-----~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~-------~~~~~----~~~~~~v~~~~~~~~~~~l~~~~~dg  164 (262)
                      .     .+.+++|+|+|++|++|+.||+|++||+.+++       .+..+    .+|...|.+++|+|+|  +++++.|+
T Consensus       125 ~~~~~~sv~svafSPDG~~LAsgs~DGtVkIWd~~~~~l~~~~~i~l~ti~~~~~gh~~~V~sVawSPdg--Laass~D~  202 (588)
T 2j04_A          125 GNLSSRTYHCFEWNPIESSIVVGNEDGELQFFSIRKNSENTPEFYFESSIRLSDAGSKDWVTHIVWYEDV--LVAALSNN  202 (588)
T ss_dssp             SCSTTTCEEEEEECSSSSCEEEEETTSEEEEEECCCCTTTCCCCEEEEEEECSCTTCCCCEEEEEEETTE--EEEEETTC
T ss_pred             CccccccEEEEEEcCCCCEEEEEcCCCEEEEEECCCCccccccceeeeeeecccccccccEEEEEEcCCc--EEEEeCCC
Confidence            3     59999999999999999999999999999875       25665    5677899999999999  88999999


Q ss_pred             eEEEEeCCC-------------CC---------ccEEEEEcCCCeEEEEecCCCceeeEEeccCCceeEEEEEEecCCCe
Q 042146          165 LYRILDAST-------------PN---------GKFILVGTLDNTLRLWNYSTRKILKTYSGYTNSKYCISSTFSVTNGK  222 (262)
Q Consensus       165 ~i~~~d~~~-------------~~---------~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  222 (262)
                      +|++||+..             ..         ++.|++++ ++.|++||+.+++......+                  
T Consensus       203 tVrlWd~~~~~~~~~~~tL~~~h~~~V~svaFsg~~LASa~-~~tIkLWd~~~~~~~~~~~g------------------  263 (588)
T 2j04_A          203 SVFSMTVSASSHQPVSRMIQNASRRKITDLKIVDYKVVLTC-PGYVHKIDLKNYSISSLKTG------------------  263 (588)
T ss_dssp             CEEEECCCSSSSCCCEEEEECCCSSCCCCEEEETTEEEEEC-SSEEEEEETTTTEEEEEECS------------------
T ss_pred             eEEEEECCCCccccceeeecccccCcEEEEEEECCEEEEEe-CCeEEEEECCCCeEEEEEcC------------------
Confidence            999999743             11         46788887 69999999998777443334                  


Q ss_pred             eEEccccceEEEEE--cCCCCeEEEeeecCCCcEEEEeec
Q 042146          223 YIVSHRDPVISVAS--HPAKNIIASGALDNDRTMKIWTQE  260 (262)
Q Consensus       223 ~~~~~~~~v~~~~~--~p~~~~l~~~~~d~d~~i~iw~~~  260 (262)
                          |...|..++|  +|++..|++++  +||+ ++|..+
T Consensus       264 ----h~~~V~~va~~~s~d~~~La~a~--edG~-klw~~d  296 (588)
T 2j04_A          264 ----SLENFHIIPLNHEKESTILLMSN--KTSY-KVLLED  296 (588)
T ss_dssp             ----CCSCCCEEEETTCSSCEEEEECS--SCEE-EEEESS
T ss_pred             ----CCceEEEEEeeeCCCCCEEEEEc--CCCC-EEEeec
Confidence                8899999999  99999999999  8999 999864

>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3

Probab=99.97  E-value=6.4e-28  Score=191.96  Aligned_cols=232  Identities=15%  Similarity=0.177  Sum_probs=178.9

Q ss_pred             CCCCceeeec--ccccceecccCcCceEEEEEccCCCeE-EEecCCCeEEEeecCCCCCCCCCC-CCCCcc--ccCCccc
Q 042146            2 SSDRSLESFR--PYTLTQTLNGHLRAVSYVKFSHDGRLL-TSSSAEKTLLTYSLSSISNFDSTP-PSPLQK--FTGHEQG   75 (262)
Q Consensus         2 s~d~~i~~~~--~~~~~~~~~~h~~~v~~~~~~~~~~~l-~s~~~d~~i~iw~~~~~~~~~~~~-~~~~~~--~~~~~~~   75 (262)
                      +.|++|+.|+  ..+.+..+..|. .+.+++|+|+++++ ++++.|+.|++||+.+.+...... ......  +......
T Consensus         9 ~~d~~v~v~d~~~~~~~~~~~~~~-~~~~~~~s~dg~~l~~~~~~d~~i~v~d~~~~~~~~~~~~~~~v~~~~~spdg~~   87 (391)
T 1l0q_A            9 SESDNISVIDVTSNKVTATIPVGS-NPMGAVISPDGTKVYVANAHSNDVSIIDTATNNVIATVPAGSSPQGVAVSPDGKQ   87 (391)
T ss_dssp             TTTTEEEEEETTTTEEEEEEECSS-SEEEEEECTTSSEEEEEEGGGTEEEEEETTTTEEEEEEECSSSEEEEEECTTSSE
T ss_pred             CCCCEEEEEECCCCeEEEEeecCC-CcceEEECCCCCEEEEECCCCCeEEEEECCCCeEEEEEECCCCccceEECCCCCE
Confidence            4688888886  456777777765 48999999999976 677799999999987643321111 111111  1111111


Q ss_pred             cc----cceeEEEEecCCCccceecccCCcceEEEEEeCCCCEE-EeecCCCeEEEEECCCCeeeeeeecCCCCeeeEEE
Q 042146           76 IS----DLATIRLWDVPTATSLKTLIGHTNYVFCINFNPQSNRI-VSDTFNETIRIWDIKTGKCLKVLPAHSDPVTAIDF  150 (262)
Q Consensus        76 v~----~~~~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l-~~~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~  150 (262)
                      +.    ....|++||+.+++.+..+..+ ..+.+++|+|+++.+ ++++.++.|++||+++++.+..+..+ ..+.+++|
T Consensus        88 l~~~~~~~~~v~v~d~~~~~~~~~~~~~-~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~-~~~~~~~~  165 (391)
T 1l0q_A           88 VYVTNMASSTLSVIDTTSNTVAGTVKTG-KSPLGLALSPDGKKLYVTNNGDKTVSVINTVTKAVINTVSVG-RSPKGIAV  165 (391)
T ss_dssp             EEEEETTTTEEEEEETTTTEEEEEEECS-SSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEECC-SSEEEEEE
T ss_pred             EEEEECCCCEEEEEECCCCeEEEEEeCC-CCcceEEECCCCCEEEEEeCCCCEEEEEECCCCcEEEEEecC-CCcceEEE
Confidence            11    1248999999999887777654 568999999999977 68888999999999999988888765 45699999


Q ss_pred             ccCCCEE-EEEeCCCeEEEEeCCC-------------------CCccEEEEEc---CCCeEEEEecCCCceeeEEeccCC
Q 042146          151 NRDGTMI-VTSSYDGLYRILDAST-------------------PNGKFILVGT---LDNTLRLWNYSTRKILKTYSGYTN  207 (262)
Q Consensus       151 ~~~~~~l-~~~~~dg~i~~~d~~~-------------------~~~~~l~~~~---~dg~i~i~d~~~~~~~~~~~~~~~  207 (262)
                      +|+++.+ ++++.++.|++||++.                   ++++++++++   .++.|++||+++++.+..+..   
T Consensus       166 ~~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~v~~~d~~~~~~~~~~~~---  242 (391)
T 1l0q_A          166 TPDGTKVYVANFDSMSISVIDTVTNSVIDTVKVEAAPSGIAVNPEGTKAYVTNVDKYFNTVSMIDTGTNKITARIPV---  242 (391)
T ss_dssp             CTTSSEEEEEETTTTEEEEEETTTTEEEEEEECSSEEEEEEECTTSSEEEEEEECSSCCEEEEEETTTTEEEEEEEC---
T ss_pred             CCCCCEEEEEeCCCCEEEEEECCCCeEEEEEecCCCccceEECCCCCEEEEEecCcCCCcEEEEECCCCeEEEEEec---
Confidence            9999877 5677899999999876                   7888888887   689999999999988887764   


Q ss_pred             ceeEEEEEEecCCCeeEEccccceEEEEEcCCCCeE-EEeeecCCCcEEEEeecc
Q 042146          208 SKYCISSTFSVTNGKYIVSHRDPVISVASHPAKNII-ASGALDNDRTMKIWTQEK  261 (262)
Q Consensus       208 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l-~~~~~d~d~~i~iw~~~~  261 (262)
                                         + ..+.+++|+|+++.| ++++  .|+.|++||+..
T Consensus       243 -------------------~-~~~~~~~~s~dg~~l~~s~~--~d~~v~v~d~~~  275 (391)
T 1l0q_A          243 -------------------G-PDPAGIAVTPDGKKVYVALS--FXNTVSVIDTAT  275 (391)
T ss_dssp             -------------------C-SSEEEEEECTTSSEEEEEET--TTTEEEEEETTT
T ss_pred             -------------------C-CCccEEEEccCCCEEEEEcC--CCCEEEEEECCC
Confidence                               3 357899999999977 5556  799999999863

>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae}

Probab=99.97  E-value=1.4e-28  Score=192.69  Aligned_cols=194  Identities=10%  Similarity=0.093  Sum_probs=150.9

Q ss_pred             CCCCceeeeccc-----------ccceec-ccCcCceEEEEEcc--CCCeEEEecCCCeEEEeecCCCCCCCCCCCCCCc
Q 042146            2 SSDRSLESFRPY-----------TLTQTL-NGHLRAVSYVKFSH--DGRLLTSSSAEKTLLTYSLSSISNFDSTPPSPLQ   67 (262)
Q Consensus         2 s~d~~i~~~~~~-----------~~~~~~-~~h~~~v~~~~~~~--~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~   67 (262)
                      +.|+++..|...           +.++.+ .+|.++|.+++|+|  ++++|++++.||+|++||++              
T Consensus        92 s~D~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~s~dg~i~~wd~~--------------  157 (343)
T 3lrv_A           92 GPCNRLLLLYPGNQITILDSKTNKVLREIEVDSANEIIYMYGHNEVNTEYFIWADNRGTIGFQSYE--------------  157 (343)
T ss_dssp             CSTTEEEEEETTTEEEEEETTTCCEEEEEECCCSSCEEEEECCC---CCEEEEEETTCCEEEEESS--------------
T ss_pred             cCCCeEEEEEccCceEEeecCCcceeEEeecCCCCCEEEEEcCCCCCCCEEEEEeCCCcEEEEECC--------------
Confidence            468888888432           222233 36778999999999  99999999999999998664              


Q ss_pred             cccCCccccccceeEEEEecCCCccceec-ccCCcceEEEEEeCCCCEEEeecCCCeEEEEECCCCeee-eeeec-CCCC
Q 042146           68 KFTGHEQGISDLATIRLWDVPTATSLKTL-IGHTNYVFCINFNPQSNRIVSDTFNETIRIWDIKTGKCL-KVLPA-HSDP  144 (262)
Q Consensus        68 ~~~~~~~~v~~~~~i~v~d~~~~~~~~~~-~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~-~~~~~-~~~~  144 (262)
                                           +++..... ..+...+.+++|+|++.+|++|+.||.|++||+++++.+ ..+.. |.++
T Consensus       158 ---------------------~~~~~~~~~~~~~~~i~~~~~~pdg~~lasg~~dg~i~iwd~~~~~~~~~~~~~~h~~~  216 (343)
T 3lrv_A          158 ---------------------DDSQYIVHSAKSDVEYSSGVLHKDSLLLALYSPDGILDVYNLSSPDQASSRFPVDEEAK  216 (343)
T ss_dssp             ---------------------SSCEEEEECCCSSCCCCEEEECTTSCEEEEECTTSCEEEEESSCTTSCCEECCCCTTSC
T ss_pred             ---------------------CCcEEEEEecCCCCceEEEEECCCCCEEEEEcCCCEEEEEECCCCCCCccEEeccCCCC
Confidence                                 33333333 235567999999999999999999999999999999877 77877 9999


Q ss_pred             eeeEEEccCCCEEEEEeCCCeEEEEeCCC-------------------------CCccEEEEEcC-CCeEEEEecCCCce
Q 042146          145 VTAIDFNRDGTMIVTSSYDGLYRILDAST-------------------------PNGKFILVGTL-DNTLRLWNYSTRKI  198 (262)
Q Consensus       145 v~~~~~~~~~~~l~~~~~dg~i~~~d~~~-------------------------~~~~~l~~~~~-dg~i~i~d~~~~~~  198 (262)
                      |++++|+|++.+|++++ |+.|++||++.                         |++++|++++. |+.|++|++.....
T Consensus       217 v~~l~fs~~g~~l~s~~-~~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~s~~d~~i~v~~~~~~~~  295 (343)
T 3lrv_A          217 IKEVKFADNGYWMVVEC-DQTVVCFDLRKDVGTLAYPTYTIPEFKTGTVTYDIDDSGKNMIAYSNESNSLTIYKFDKKTK  295 (343)
T ss_dssp             EEEEEECTTSSEEEEEE-SSBEEEEETTSSTTCBSSCCCBC-----CCEEEEECTTSSEEEEEETTTTEEEEEEECTTTC
T ss_pred             EEEEEEeCCCCEEEEEe-CCeEEEEEcCCCCcceeecccccccccccceEEEECCCCCEEEEecCCCCcEEEEEEccccc
Confidence            99999999999999999 55999999876                         56889999888 99999999976543


Q ss_pred             eeEEeccCCceeEEEEEEecCCCeeEEccccceEEEEEcC---CCCeEEEeeecCCCcEEEEee
Q 042146          199 LKTYSGYTNSKYCISSTFSVTNGKYIVSHRDPVISVASHP---AKNIIASGALDNDRTMKIWTQ  259 (262)
Q Consensus       199 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p---~~~~l~~~~~d~d~~i~iw~~  259 (262)
                      ....                          .++..++|+|   +...+++++  .|+.+.++-.
T Consensus       296 ~~~~--------------------------~~~~~~~~~~~~~~~~~l~~~~--~d~~~~~~~~  331 (343)
T 3lrv_A          296 NWTK--------------------------DEESALCLQSDTADFTDMDVVC--GDGGIAAILK  331 (343)
T ss_dssp             SEEE--------------------------EEEEECCC----CCCCEEEEEE--ETTEEEEEEE
T ss_pred             ceEe--------------------------cCceeEecCccccccceeEEEe--cCCceEEEEe
Confidence            3222                          2456777777   777788777  6777777643

>4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A

Probab=99.97  E-value=7.1e-30  Score=203.55  Aligned_cols=203  Identities=15%  Similarity=0.095  Sum_probs=135.0

Q ss_pred             CceEEEEEccCCCeEEEecCCCeEEEeecCCCCCCCCCCCCCCccccCCccccccceeEEEEecCCCccceecccCCcce
Q 042146           24 RAVSYVKFSHDGRLLTSSSAEKTLLTYSLSSISNFDSTPPSPLQKFTGHEQGISDLATIRLWDVPTATSLKTLIGHTNYV  103 (262)
Q Consensus        24 ~~v~~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~i~v~d~~~~~~~~~~~~~~~~v  103 (262)
                      ..+....+++++.+|++++.|++|+|||.+...                              ......+..+.+|.+.|
T Consensus        90 ~~~~~~~~~~~~~~las~~~d~~v~lw~~~~~~------------------------------~~~~~~~~~~~gH~~~v  139 (393)
T 4gq1_A           90 GDGNVNSSPVYSLFLACVCQDNTVRLIITKNET------------------------------IITQHVLGGKSGHHNFV  139 (393)
T ss_dssp             -------CCEEEEEEEEEETTSCEEEEEEETTE------------------------------EEEEEEECTTTSCSSCE
T ss_pred             CCcceeecCCCCCEEEEEeCCCcEEEEECCCCc------------------------------cceeeeecccCCCCCce
Confidence            333344445566789999999999999764311                              00112344678999999


Q ss_pred             EEEEEeC--------CCCEEEeecCCCeEEEEECCCCeeeeeeecCCCCeeeEEEccCC-CEEEEEeCCCeEEEEeCCC-
Q 042146          104 FCINFNP--------QSNRIVSDTFNETIRIWDIKTGKCLKVLPAHSDPVTAIDFNRDG-TMIVTSSYDGLYRILDAST-  173 (262)
Q Consensus       104 ~~~~~~~--------~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~dg~i~~~d~~~-  173 (262)
                      ++++|+|        ++++|++|+.|++|+|||++++.++..+..|..++.+++|+|++ .+|++++.|++|++||++. 
T Consensus       140 ~~v~~~p~~~~~~~~d~~~las~s~D~tv~~Wd~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~d~~v~~wd~~t~  219 (393)
T 4gq1_A          140 NDIDIADVYSADNRLAEQVIASVGDDCTLIIWRLTDEGPILAGYPLSSPGISVQFRPSNPNQLIVGERNGNIRIFDWTLN  219 (393)
T ss_dssp             EEEEEEEEECTTCSEEEEEEEEEETTSEEEEEEEETTEEEEEEEECSSCEEEEEEETTEEEEEEEEETTSEEEEEETTCC
T ss_pred             EEEEEccccccccCCCCCEEEEEECCCeEEEEECCCCceeeeecCCCCCcEEEEECCCCCceEEecCCCCEEEEEECCCC
Confidence            9999998        78899999999999999999888888888899999999999977 4899999999999999865 


Q ss_pred             ---------------------------------------------CCccEEEEEcCCCeEEEEecCCCceeeEEeccCCc
Q 042146          174 ---------------------------------------------PNGKFILVGTLDNTLRLWNYSTRKILKTYSGYTNS  208 (262)
Q Consensus       174 ---------------------------------------------~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~  208 (262)
                                                                   ++++.+++++.|+.+++||+..++....+..+...
T Consensus       220 ~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~v~~v~~~~~dg~~l~s~s~d~~i~vwd~~~~~~~~~l~~~~~~  299 (393)
T 4gq1_A          220 LSAEENSQTELVKNPWLLTLNTLPLVNTCHSSGIASSLANVRWIGSDGSGILAMCKSGAWLRWNLFANNDYNEISDSTMK  299 (393)
T ss_dssp             C----------CSCCCSEEEESGGGC------CCSSSCSEEEEETTTTCEEEEECTTSEEEEEEC---------------
T ss_pred             cccccccccCCcccceEEecccccceeeeecccccccceeeeeecCCCCEEEEEeCCCCEEEEECccCCCCceEeeecCc
Confidence                                                         57889999999999999999998887777665443


Q ss_pred             eeEEEEEEecCCCeeEEccccceEEEEEcCC-CCeEEEeeecCCCcEEEEeecc
Q 042146          209 KYCISSTFSVTNGKYIVSHRDPVISVASHPA-KNIIASGALDNDRTMKIWTQEK  261 (262)
Q Consensus       209 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~-~~~l~~~~~d~d~~i~iw~~~~  261 (262)
                      +......   ++.+....+...+..+.+.+. +.++++|+  .||.|++||+.+
T Consensus       300 ~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~sgs--~Dg~V~lwd~~~  348 (393)
T 4gq1_A          300 LGPKNLL---PNVQGISLFPSLLGACPHPRYMDYFATAHS--QHGLIQLINTYE  348 (393)
T ss_dssp             ----CCS---CSEEEECSSCCSSCCEECSSCTTEEEEEET--TTTEEEEEETTC
T ss_pred             cccEEEc---cccccccccCcceeEEEccCCCCEEEEEEC--CCCEEEEEECCC
Confidence            3322111   111111122333333333333 44566677  799999999864

>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}

Probab=99.97  E-value=6.4e-28  Score=194.47  Aligned_cols=233  Identities=9%  Similarity=0.136  Sum_probs=179.1

Q ss_pred             CCCceeeecc--cccce-----ecccCcCceEEEEEccCCCeEEEecCCCeEEEeecCCCCCCCCCC--CCCCc--cccC
Q 042146            3 SDRSLESFRP--YTLTQ-----TLNGHLRAVSYVKFSHDGRLLTSSSAEKTLLTYSLSSISNFDSTP--PSPLQ--KFTG   71 (262)
Q Consensus         3 ~d~~i~~~~~--~~~~~-----~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~--~~~~~--~~~~   71 (262)
                      .|++|..|+.  .+..+     .+.+|.+.|.+++|+|+++++++++.|+.|++||++.........  .....  .+..
T Consensus       142 ~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~~d~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~  221 (433)
T 3bws_A          142 EDEGMDVLDINSGQTVRLSPPEKYKKKLGFVETISIPEHNELWVSQMQANAVHVFDLKTLAYKATVDLTGKWSKILLYDP  221 (433)
T ss_dssp             TSSSEEEEETTTCCEEEECCCHHHHTTCCEEEEEEEGGGTEEEEEEGGGTEEEEEETTTCCEEEEEECSSSSEEEEEEET
T ss_pred             CCCeEEEEECCCCeEeeecCcccccccCCceeEEEEcCCCEEEEEECCCCEEEEEECCCceEEEEEcCCCCCeeEEEEcC
Confidence            4677888863  34444     456899999999999999999999999999999987643221111  11111  1111


Q ss_pred             Ccccc--c--cceeEEEEecCCCccceecccCCcceEEEEEeCCCCEEEeec--------CCCeEEEEECCCCeeeeeee
Q 042146           72 HEQGI--S--DLATIRLWDVPTATSLKTLIGHTNYVFCINFNPQSNRIVSDT--------FNETIRIWDIKTGKCLKVLP  139 (262)
Q Consensus        72 ~~~~v--~--~~~~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~--------~dg~i~vwd~~~~~~~~~~~  139 (262)
                      ....+  .  ..+.|++||+.+++.+..+..+ ..+.+++|+|+++++++++        .||.|++||+++++.+..+ 
T Consensus       222 ~~~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~-~~~~~~~~~~~g~~l~~~~~~~~~~~~~dg~i~~~d~~~~~~~~~~-  299 (433)
T 3bws_A          222 IRDLVYCSNWISEDISVIDRKTKLEIRKTDKI-GLPRGLLLSKDGKELYIAQFSASNQESGGGRLGIYSMDKEKLIDTI-  299 (433)
T ss_dssp             TTTEEEEEETTTTEEEEEETTTTEEEEECCCC-SEEEEEEECTTSSEEEEEEEESCTTCSCCEEEEEEETTTTEEEEEE-
T ss_pred             CCCEEEEEecCCCcEEEEECCCCcEEEEecCC-CCceEEEEcCCCCEEEEEECCCCccccCCCeEEEEECCCCcEEeec-
Confidence            11111  1  1238999999998887777654 4599999999999998887        5889999999999877766 


Q ss_pred             cCCCCeeeEEEccCCCE-EEEEeCCCeEEEEeCCC-------------------CCccEEEEEcC---------------
Q 042146          140 AHSDPVTAIDFNRDGTM-IVTSSYDGLYRILDAST-------------------PNGKFILVGTL---------------  184 (262)
Q Consensus       140 ~~~~~v~~~~~~~~~~~-l~~~~~dg~i~~~d~~~-------------------~~~~~l~~~~~---------------  184 (262)
                      .|...+.+++|+|+++. +++++.++.|++||+..                   ++++++++++.               
T Consensus       300 ~~~~~~~~~~~~~~g~~l~~~~~~~~~v~v~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~g~~  379 (433)
T 3bws_A          300 GPPGNKRHIVSGNTENKIYVSDMCCSKIEVYDLKEKKVQKSIPVFDKPNTIALSPDGKYLYVSCRGPNHPTEGYLKKGLV  379 (433)
T ss_dssp             EEEECEEEEEECSSTTEEEEEETTTTEEEEEETTTTEEEEEEECSSSEEEEEECTTSSEEEEEECCCCCTTTCTTSCCSS
T ss_pred             cCCCCcceEEECCCCCEEEEEecCCCEEEEEECCCCcEEEEecCCCCCCeEEEcCCCCEEEEEecCCCcccccccccccc
Confidence            45668899999999975 56668999999999876                   78888888776               


Q ss_pred             CCeEEEEecCCCceeeEEeccCCceeEEEEEEecCCCeeEEccccceEEEEEcCCCCeEEEeeecCCCcEEEEeecc
Q 042146          185 DNTLRLWNYSTRKILKTYSGYTNSKYCISSTFSVTNGKYIVSHRDPVISVASHPAKNIIASGALDNDRTMKIWTQEK  261 (262)
Q Consensus       185 dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~d~d~~i~iw~~~~  261 (262)
                      ||.|++||+.+++.+..+.                       +...+.+++|+|++++|++++. .|+.|++|+++.
T Consensus       380 dg~v~~~d~~~~~~~~~~~-----------------------~~~~~~~~~~s~dg~~l~~~~~-~d~~i~v~~~~~  432 (433)
T 3bws_A          380 LGKVYVIDTTTDTVKEFWE-----------------------AGNQPTGLDVSPDNRYLVISDF-LDHQIRVYRRDG  432 (433)
T ss_dssp             CCEEEEEETTTTEEEEEEE-----------------------CSSSEEEEEECTTSCEEEEEET-TTTEEEEEEETT
T ss_pred             ceEEEEEECCCCcEEEEec-----------------------CCCCCceEEEcCCCCEEEEEEC-CCCeEEEEEecC
Confidence            5799999999999888776                       3456899999999999988872 399999999864

>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae}

Probab=99.97  E-value=4.6e-29  Score=217.07  Aligned_cols=215  Identities=14%  Similarity=0.127  Sum_probs=159.8

Q ss_pred             cccCcCceEEEEEccCCCeEEEecCCCeEEEeecCCCCCCCCCCCCCCccc-----cCCccccccce-------------
Q 042146           19 LNGHLRAVSYVKFSHDGRLLTSSSAEKTLLTYSLSSISNFDSTPPSPLQKF-----TGHEQGISDLA-------------   80 (262)
Q Consensus        19 ~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~-----~~~~~~v~~~~-------------   80 (262)
                      +.+|...+.+++|+|++++|++|+.|++|++||+........  ......+     .+|...+..++             
T Consensus       431 l~G~~~~v~sv~~spdg~~laSgs~DgtVrlWd~~~g~~~~~--~~~~~~l~~~~~~~h~~~V~svafspdg~~LAsgs~  508 (902)
T 2oaj_A          431 LKGGVRTKRQKLPAEYGTAFITGHSNGSVRIYDASHGDIQDN--ASFEVNLSRTLNKAKELAVDKISFAAETLELAVSIE  508 (902)
T ss_dssp             CCCSBCCCCCCCCCSEEEEEEEEETTSEEEEEESSCCTTTTT--BCEEEEHHHHTTCSSSCCEEEEEEETTTTEEEEEET
T ss_pred             ccCCcCCCCcccccccCcEEEEecCCCcEEEEECCCccccCC--ceEEeechhhcCCCCCCceeEEEecCCCCeEEEEec
Confidence            445566666667789999999999999999999976532100  0000001     14444444333             


Q ss_pred             --eEEEEecCCCc---------------------------------------------cceecccCCcceEEEEEeCCCC
Q 042146           81 --TIRLWDVPTAT---------------------------------------------SLKTLIGHTNYVFCINFNPQSN  113 (262)
Q Consensus        81 --~i~v~d~~~~~---------------------------------------------~~~~~~~~~~~v~~~~~~~~~~  113 (262)
                        +|++||+.+++                                             ++..+.+|.+.|++++|+|+| 
T Consensus       509 DgtV~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~h~~~V~svafSpdG-  587 (902)
T 2oaj_A          509 TGDVVLFKYEVNQFYSVENRPESGDLEMNFRRFSLNNTNGVLVDVRDRAPTGVRQGFMPSTAVHANKGKTSAINNSNIG-  587 (902)
T ss_dssp             TSCEEEEEEEECCC---------------CCSCCGGGSSCSEEECGGGCCTTCSEEEEEEEEECCCSCSEEEEEECBTS-
T ss_pred             CcEEEEEEecCccccCccccCCCcccceeeeeccccCCccccccccccCCCCCCCccceeEEEEcCCCcEEEEEecCCc-
Confidence              89999997652                                             255677899999999999999 


Q ss_pred             EEEeecCCCeEEEEECCCCeeee-----eee-cCCCCeeeEEEc-----cCC---CEEEEEeCCCeEEEEeC---CC---
Q 042146          114 RIVSDTFNETIRIWDIKTGKCLK-----VLP-AHSDPVTAIDFN-----RDG---TMIVTSSYDGLYRILDA---ST---  173 (262)
Q Consensus       114 ~l~~~~~dg~i~vwd~~~~~~~~-----~~~-~~~~~v~~~~~~-----~~~---~~l~~~~~dg~i~~~d~---~~---  173 (262)
                      +||+|+.|++|++||+++...+.     .+. +|...|++++|+     |||   .+|++++.|++|++||+   .+   
T Consensus       588 ~lAsgs~D~tv~lwd~~~~~~~~~~~~~~~~~gh~~~V~sv~Fs~~~~~~Dg~~~~~l~sgs~D~tv~~wd~~p~~~g~~  667 (902)
T 2oaj_A          588 FVGIAYAAGSLMLIDRRGPAIIYMENIREISGAQSACVTCIEFVIMEYGDDGYSSILMVCGTDMGEVITYKILPASGGKF  667 (902)
T ss_dssp             EEEEEETTSEEEEEETTTTEEEEEEEGGGTCSSCCCCEEEEEEEEEECTTSSSEEEEEEEEETTSEEEEEEEEECGGGCE
T ss_pred             EEEEEeCCCcEEEEECCCCeEEEEeehhHhccccccceEEEEEEEEecCCCCCcceEEEEEecCCcEEEEEEecCCCCcE
Confidence            99999999999999998876653     233 789999999999     885   79999999999999997   21   


Q ss_pred             -------------------------------C-------------CccEEEEEcCCCeEEEEecCCCceeeEEeccCCce
Q 042146          174 -------------------------------P-------------NGKFILVGTLDNTLRLWNYSTRKILKTYSGYTNSK  209 (262)
Q Consensus       174 -------------------------------~-------------~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~  209 (262)
                                                     +             ...++++++ +..|+||++.++++.+....     
T Consensus       668 ~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~l~~~-~~~ir~~~~~~~k~~~k~~~-----  741 (902)
T 2oaj_A          668 DVQLMDITNVTSKGPIHKIDAFSKETKSSCLATIPKMQNLSKGLCIPGIVLITG-FDDIRLITLGKSKSTHKGFK-----  741 (902)
T ss_dssp             EEEEEEEEECCSSCCCCEEEEEETTTCCBCBCBHHHHHGGGGTCCCCEEEEEEC-SSEEEEECTTCCCEEEEECS-----
T ss_pred             EEEecCceecCCCCceEEEEeEecCCCCcccCCHHHHhccCCCCCCCeEEEEEe-ccceEEEeCccccceeeEcc-----
Confidence                                           0             122333333 77899999999988877644     


Q ss_pred             eEEEEEEecCCCeeEEccccceEEE---E------EcCCCCeEEEeeecCCCcEEEEeecc
Q 042146          210 YCISSTFSVTNGKYIVSHRDPVISV---A------SHPAKNIIASGALDNDRTMKIWTQEK  261 (262)
Q Consensus       210 ~~~~~~~~~~~~~~~~~~~~~v~~~---~------~~p~~~~l~~~~~d~d~~i~iw~~~~  261 (262)
                                       |...+.++   .      |++++..|++.+  .||.|++|++..
T Consensus       742 -----------------~~~~~~~v~~~~~~~~~~~~~~~~~l~~~~--~~g~i~~~s~p~  783 (902)
T 2oaj_A          742 -----------------YPLAATGLSYISTVEKNNDRKNLTVIITLE--INGHLRVFTIPD  783 (902)
T ss_dssp             -----------------SCEEEEEEEEEEEECSSSCEEEEEEEEEEE--TTSEEEEEETTT
T ss_pred             -----------------cceeeeEEEEEEeccccccccCceEEEEEe--CCCcEEEEECcc
Confidence                             33333443   5      788999999999  999999999863

>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae}

Probab=99.96  E-value=3.2e-28  Score=197.36  Aligned_cols=213  Identities=15%  Similarity=0.238  Sum_probs=152.4

Q ss_pred             cCceEEEEEccCCCeEEEecCCCeEEEeecCCCC---CCCCCCCCCC----ccc--c-CCccccccc------------e
Q 042146           23 LRAVSYVKFSHDGRLLTSSSAEKTLLTYSLSSIS---NFDSTPPSPL----QKF--T-GHEQGISDL------------A   80 (262)
Q Consensus        23 ~~~v~~~~~~~~~~~l~s~~~d~~i~iw~~~~~~---~~~~~~~~~~----~~~--~-~~~~~v~~~------------~   80 (262)
                      ..++.+++|+|+|++|+++ .++.|++||+.+..   ..........    ...  . .........            .
T Consensus         4 ~~p~~~v~~s~dg~~l~~~-~~~~i~v~d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   82 (450)
T 2vdu_B            4 IHPLQNLLTSRDGSLVFAI-IKNCILSFKYQSPNHWEFAGKWSDDFDKIQESRNTTAKEQQGQSSENENENKKLKSNKGD   82 (450)
T ss_dssp             ECCCCEEEECSSSSEEEEE-ETTEEEEEEEETTTEEEEEEEEECCC----------------------------------
T ss_pred             cccEEEEEecCCCCEEEEE-eCCeEEEEECCCCCcceeeeecCCccccccccccccchhhccccccccccccccccCcCc
Confidence            4678999999999966665 57899999987654   1100000000    000  0 000000000            0


Q ss_pred             eEEEEecCCCccceecccCCcceEEEEEeCCCCEE-EeecCCCeEEEEECC--CCeeeeeee--cCCCCeeeEEEccCCC
Q 042146           81 TIRLWDVPTATSLKTLIGHTNYVFCINFNPQSNRI-VSDTFNETIRIWDIK--TGKCLKVLP--AHSDPVTAIDFNRDGT  155 (262)
Q Consensus        81 ~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l-~~~~~dg~i~vwd~~--~~~~~~~~~--~~~~~v~~~~~~~~~~  155 (262)
                      .+.--.............|...|.+++|+|++++| ++++.||.|++||+.  +++.+..+.  .|...|.+++|+|+++
T Consensus        83 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~  162 (450)
T 2vdu_B           83 SIKRTAAKVPSPGLGAPPIYSYIRNLRLTSDESRLIACADSDKSLLVFDVDKTSKNVLKLRKRFCFSKRPNAISIAEDDT  162 (450)
T ss_dssp             -----------------CCCCCEEEEEECTTSSEEEEEEGGGTEEEEEEECSSSSSCEEEEEEEECSSCEEEEEECTTSS
T ss_pred             cccccCccccCCCCCCCccCCceEEEEEcCCCCEEEEEECCCCeEEEEECcCCCCceeeeeecccCCCCceEEEEcCCCC
Confidence            00000000001112234677789999999999996 899999999999999  888887775  5678999999999999


Q ss_pred             EEEEEeCCCeEEEEeCCC------------------------CC---ccEEEEEcCCCeEEEEecCCCceeeEE-eccCC
Q 042146          156 MIVTSSYDGLYRILDAST------------------------PN---GKFILVGTLDNTLRLWNYSTRKILKTY-SGYTN  207 (262)
Q Consensus       156 ~l~~~~~dg~i~~~d~~~------------------------~~---~~~l~~~~~dg~i~i~d~~~~~~~~~~-~~~~~  207 (262)
                      +|++++.+|.+++|++..                        |+   +++|++|+.|+.|++||+++++++..+ .+   
T Consensus       163 ~l~~~~~~g~v~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~---  239 (450)
T 2vdu_B          163 TVIIADKFGDVYSIDINSIPEEKFTQEPILGHVSMLTDVHLIKDSDGHQFIITSDRDEHIKISHYPQCFIVDKWLFG---  239 (450)
T ss_dssp             EEEEEETTSEEEEEETTSCCCSSCCCCCSEECSSCEEEEEEEECTTSCEEEEEEETTSCEEEEEESCTTCEEEECCC---
T ss_pred             EEEEEeCCCcEEEEecCCcccccccceeeecccCceEEEEEcCCCCCCcEEEEEcCCCcEEEEECCCCceeeeeecC---
Confidence            999999999999998643                        67   889999999999999999998887764 34   


Q ss_pred             ceeEEEEEEecCCCeeEEccccceEEEEEcCCCCeEEEeeecCCCcEEEEeecc
Q 042146          208 SKYCISSTFSVTNGKYIVSHRDPVISVASHPAKNIIASGALDNDRTMKIWTQEK  261 (262)
Q Consensus       208 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~d~d~~i~iw~~~~  261 (262)
                                         |...|.+++|+ ++.+|++++  .|+.|++||+..
T Consensus       240 -------------------h~~~v~~~~~s-d~~~l~s~~--~d~~v~vwd~~~  271 (450)
T 2vdu_B          240 -------------------HKHFVSSICCG-KDYLLLSAG--GDDKIFAWDWKT  271 (450)
T ss_dssp             -------------------CSSCEEEEEEC-STTEEEEEE--SSSEEEEEETTT
T ss_pred             -------------------CCCceEEEEEC-CCCEEEEEe--CCCeEEEEECCC
Confidence                               88999999999 999999999  899999999864

>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}

Probab=99.96  E-value=1.2e-26  Score=186.99  Aligned_cols=228  Identities=12%  Similarity=0.153  Sum_probs=174.3

Q ss_pred             ceeeecc--c--ccceecccCcCceEEEEEccCCCeEEEecCCCeEEEeecCCCCCCCCCCCCCCccccCCcccc-----
Q 042146            6 SLESFRP--Y--TLTQTLNGHLRAVSYVKFSHDGRLLTSSSAEKTLLTYSLSSISNFDSTPPSPLQKFTGHEQGI-----   76 (262)
Q Consensus         6 ~i~~~~~--~--~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v-----   76 (262)
                      .++.+++  .  +.+..+..+ ..+.+++|+|++.++++++.++.|++||+.+.........   ..+.+|...+     
T Consensus       102 ~l~~~d~~~~~~~~~~~~~~~-~~~~~~~~s~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~---~~~~~~~~~v~~~~~  177 (433)
T 3bws_A          102 KLIALDKEGITHRFISRFKTG-FQPKSVRFIDNTRLAIPLLEDEGMDVLDINSGQTVRLSPP---EKYKKKLGFVETISI  177 (433)
T ss_dssp             CEEECCBTTCSEEEEEEEECS-SCBCCCEESSSSEEEEEBTTSSSEEEEETTTCCEEEECCC---HHHHTTCCEEEEEEE
T ss_pred             EEEEECCCCCcceEEEEEcCC-CCceEEEEeCCCeEEEEeCCCCeEEEEECCCCeEeeecCc---ccccccCCceeEEEE
Confidence            5555543  2  455555554 4456999999888888899999999999876433211110   0111222111     


Q ss_pred             ----------ccceeEEEEecCCCccceecccCCcceEEEEEeCCCCEEE-eecCCCeEEEEECCCCeeeeeeecCCCCe
Q 042146           77 ----------SDLATIRLWDVPTATSLKTLIGHTNYVFCINFNPQSNRIV-SDTFNETIRIWDIKTGKCLKVLPAHSDPV  145 (262)
Q Consensus        77 ----------~~~~~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~-~~~~dg~i~vwd~~~~~~~~~~~~~~~~v  145 (262)
                                ...+.|++||+.+++.+..+..|...+.+++|+|++++++ +++.++.|++||+++++.+..+.. ...+
T Consensus       178 ~~~~~~~~s~~~d~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~~~d~~~~~~~~~~~~-~~~~  256 (433)
T 3bws_A          178 PEHNELWVSQMQANAVHVFDLKTLAYKATVDLTGKWSKILLYDPIRDLVYCSNWISEDISVIDRKTKLEIRKTDK-IGLP  256 (433)
T ss_dssp             GGGTEEEEEEGGGTEEEEEETTTCCEEEEEECSSSSEEEEEEETTTTEEEEEETTTTEEEEEETTTTEEEEECCC-CSEE
T ss_pred             cCCCEEEEEECCCCEEEEEECCCceEEEEEcCCCCCeeEEEEcCCCCEEEEEecCCCcEEEEECCCCcEEEEecC-CCCc
Confidence                      1123899999999999888888999999999999999874 566899999999999998888765 4568


Q ss_pred             eeEEEccCCCEEEEEe--------CCCeEEEEeCCC-------------------CCcc-EEEEEcCCCeEEEEecCCCc
Q 042146          146 TAIDFNRDGTMIVTSS--------YDGLYRILDAST-------------------PNGK-FILVGTLDNTLRLWNYSTRK  197 (262)
Q Consensus       146 ~~~~~~~~~~~l~~~~--------~dg~i~~~d~~~-------------------~~~~-~l~~~~~dg~i~i~d~~~~~  197 (262)
                      .+++|+|+++.+++++        .|+.|++||++.                   ++++ .+++++.++.|++||+.+++
T Consensus       257 ~~~~~~~~g~~l~~~~~~~~~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~v~v~d~~~~~  336 (433)
T 3bws_A          257 RGLLLSKDGKELYIAQFSASNQESGGGRLGIYSMDKEKLIDTIGPPGNKRHIVSGNTENKIYVSDMCCSKIEVYDLKEKK  336 (433)
T ss_dssp             EEEEECTTSSEEEEEEEESCTTCSCCEEEEEEETTTTEEEEEEEEEECEEEEEECSSTTEEEEEETTTTEEEEEETTTTE
T ss_pred             eEEEEcCCCCEEEEEECCCCccccCCCeEEEEECCCCcEEeeccCCCCcceEEECCCCCEEEEEecCCCEEEEEECCCCc
Confidence            9999999999999888        588999999876                   6775 55667899999999999988


Q ss_pred             eeeEEeccCCceeEEEEEEecCCCeeEEccccceEEEEEcCCCCeEEEeeecC-------------CCcEEEEeecc
Q 042146          198 ILKTYSGYTNSKYCISSTFSVTNGKYIVSHRDPVISVASHPAKNIIASGALDN-------------DRTMKIWTQEK  261 (262)
Q Consensus       198 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~d~-------------d~~i~iw~~~~  261 (262)
                      .+..+.                       +...+.+++|+|++++|++++.+.             ||.|++||+..
T Consensus       337 ~~~~~~-----------------------~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~g~~dg~v~~~d~~~  390 (433)
T 3bws_A          337 VQKSIP-----------------------VFDKPNTIALSPDGKYLYVSCRGPNHPTEGYLKKGLVLGKVYVIDTTT  390 (433)
T ss_dssp             EEEEEE-----------------------CSSSEEEEEECTTSSEEEEEECCCCCTTTCTTSCCSSCCEEEEEETTT
T ss_pred             EEEEec-----------------------CCCCCCeEEEcCCCCEEEEEecCCCccccccccccccceEEEEEECCC
Confidence            887775                       666789999999999988887211             57999999854

>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a

Probab=99.96  E-value=3e-27  Score=184.42  Aligned_cols=157  Identities=23%  Similarity=0.478  Sum_probs=143.1

Q ss_pred             eEEEEecCCCc-----cceecccCCcceEEEEEeCCCCEEEeecCCCeEEEEECCCCeeeeeeecCCCCeeeEEEccCCC
Q 042146           81 TIRLWDVPTAT-----SLKTLIGHTNYVFCINFNPQSNRIVSDTFNETIRIWDIKTGKCLKVLPAHSDPVTAIDFNRDGT  155 (262)
Q Consensus        81 ~i~v~d~~~~~-----~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~  155 (262)
                      .|++||+.+.+     +...+.+|...|.+++|+|++++|++++.|+.|++|+............+...+..+.+++++.
T Consensus        62 ~i~vWd~~~~~~~~~~~~~~l~~h~~~V~~~~~s~dg~~l~s~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  141 (340)
T 4aow_A           62 TIIMWKLTRDETNYGIPQRALRGHSHFVSDVVISSDGQFALSGSWDGTLRLWDLTTGTTTRRFVGHTKDVLSVAFSSDNR  141 (340)
T ss_dssp             CEEEEEECCSSSCSEEEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEECTTSS
T ss_pred             eEEEEECCCCCcccceeeEEEeCCCCCEEEEEECCCCCEEEEEcccccceEEeecccceeeeecCCCCceeEEEEeecCc
Confidence            89999997654     3456788999999999999999999999999999999999988888888889999999999999


Q ss_pred             EEEEEeCCCeEEEEeCCC-----------------------CCccEEEEEcCCCeEEEEecCCCceeeEEeccCCceeEE
Q 042146          156 MIVTSSYDGLYRILDAST-----------------------PNGKFILVGTLDNTLRLWNYSTRKILKTYSGYTNSKYCI  212 (262)
Q Consensus       156 ~l~~~~~dg~i~~~d~~~-----------------------~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~  212 (262)
                      +|++++.|+.+++||+..                       +...++++++.|+.|++||+++++++..+.+        
T Consensus       142 ~l~s~s~d~~~~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~s~~~d~~i~i~d~~~~~~~~~~~~--------  213 (340)
T 4aow_A          142 QIVSGSRDKTIKLWNTLGVCKYTVQDESHSEWVSCVRFSPNSSNPIIVSCGWDKLVKVWNLANCKLKTNHIG--------  213 (340)
T ss_dssp             CEEEEETTSCEEEECTTSCEEEEECSSSCSSCEEEEEECSCSSSCEEEEEETTSCEEEEETTTTEEEEEECC--------
T ss_pred             cceeecCCCeEEEEEeCCCceEEEEeccccCcccceEEccCCCCcEEEEEcCCCEEEEEECCCCceeeEecC--------
Confidence            999999999999999865                       3456788999999999999999999988877        


Q ss_pred             EEEEecCCCeeEEccccceEEEEEcCCCCeEEEeeecCCCcEEEEeecc
Q 042146          213 SSTFSVTNGKYIVSHRDPVISVASHPAKNIIASGALDNDRTMKIWTQEK  261 (262)
Q Consensus       213 ~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~d~d~~i~iw~~~~  261 (262)
                                    |..+|++++|+|++++|++++  .||.|++||+..
T Consensus       214 --------------h~~~v~~~~~s~~~~~l~s~s--~Dg~i~iwd~~~  246 (340)
T 4aow_A          214 --------------HTGYLNTVTVSPDGSLCASGG--KDGQAMLWDLNE  246 (340)
T ss_dssp             --------------CSSCEEEEEECTTSSEEEEEE--TTCEEEEEETTT
T ss_pred             --------------CCCcEEEEEECCCCCEEEEEe--CCCeEEEEEecc
Confidence                          888999999999999999999  899999999864

>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A

Probab=99.96  E-value=2.4e-26  Score=184.75  Aligned_cols=210  Identities=20%  Similarity=0.349  Sum_probs=162.7

Q ss_pred             ceEEEEEccCCCeEEEecCCCeEEEeecCCCCCCCCC----CCCCCccccCC--cccc---ccceeEEEEecCCCcccee
Q 042146           25 AVSYVKFSHDGRLLTSSSAEKTLLTYSLSSISNFDST----PPSPLQKFTGH--EQGI---SDLATIRLWDVPTATSLKT   95 (262)
Q Consensus        25 ~v~~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~----~~~~~~~~~~~--~~~v---~~~~~i~v~d~~~~~~~~~   95 (262)
                      .++.|+||++ ++||+|. |++|+|||..+.......    ....+..+...  ...+   ...+.|++||+++++.+..
T Consensus       107 y~~~l~wS~~-n~lAvgl-d~tV~lWd~~tg~~~~~~~~~~~~~~V~sv~fspdg~~lasgs~Dg~v~iWd~~~~~~~~~  184 (420)
T 4gga_A          107 YLNLVDWSSG-NVLAVAL-DNSVYLWSASSGDILQLLQMEQPGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQQQKRLRN  184 (420)
T ss_dssp             TCBCEEECTT-SEEEEEE-TTEEEEEETTTCCEEEEEECCSTTCCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEE
T ss_pred             cceeEEECCC-CEEEEEe-CCEEEEEECCCCCEEEEEEecCCCCcEEEEEECCCCCEEEEEECCCeEEEEEcCCCcEEEE
Confidence            3677999975 5777765 999999998764322111    11111111111  1111   1223899999999999999


Q ss_pred             cccCCcceEEEEEeCCCCEEEeecCCCeEEEEECCCC-eeeeeeecCCCCeeeEEEccCCCEEEEEeCCCeEEEEeCCC-
Q 042146           96 LIGHTNYVFCINFNPQSNRIVSDTFNETIRIWDIKTG-KCLKVLPAHSDPVTAIDFNRDGTMIVTSSYDGLYRILDAST-  173 (262)
Q Consensus        96 ~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~-~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~d~~~-  173 (262)
                      +.+|...+.+++++  +.++++|+.|+.+++||.+.. ..+..+.+|...+..+.++|+++++++++.|+.+++|+... 
T Consensus       185 ~~~h~~~v~~~s~~--~~~l~sgs~d~~i~~~d~~~~~~~~~~~~~h~~~~~~~~~~~~g~~l~s~~~D~~v~i~~~~~~  262 (420)
T 4gga_A          185 MTSHSARVGSLSWN--SYILSSGSRSGHIHHHDVRVAEHHVATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPG  262 (420)
T ss_dssp             ECCCSSCEEEEEEE--TTEEEEEETTSEEEEEETTSSSCEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEESSCC
T ss_pred             EeCCCCceEEEeeC--CCEEEEEeCCCceeEeeecccceeeEEecccccceeeeeecCCCCeeeeeeccccceEEeeccc
Confidence            99999999998875  679999999999999998764 45677889999999999999999999999999999999865 


Q ss_pred             -----------------------C-CccEEEE--EcCCCeEEEEecCCCceeeEEeccCCceeEEEEEEecCCCeeEEcc
Q 042146          174 -----------------------P-NGKFILV--GTLDNTLRLWNYSTRKILKTYSGYTNSKYCISSTFSVTNGKYIVSH  227 (262)
Q Consensus       174 -----------------------~-~~~~l~~--~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  227 (262)
                                             | +...+++  |+.|+.|++||+++++++..+.                       +
T Consensus       263 ~~~~~~~~~~~~~~~~V~~~~~~p~~~~~la~~~gs~D~~I~iwd~~t~~~~~~~~-----------------------~  319 (420)
T 4gga_A          263 EGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLSAVD-----------------------A  319 (420)
T ss_dssp             SSCSCCSEEECCCSSCEEEEEECTTCTTEEEEEECTTTCEEEEEETTTTEEEEEEE-----------------------C
T ss_pred             cccceeeeeecccCCceeeeeeCCCcccEEEEEeecCCCEEEEEeCCccccceeec-----------------------c
Confidence                                   2 3445554  4689999999999999988887                       5


Q ss_pred             ccceEEEEEcCCCCeEEEeeecCCCcEEEEeecc
Q 042146          228 RDPVISVASHPAKNIIASGALDNDRTMKIWTQEK  261 (262)
Q Consensus       228 ~~~v~~~~~~p~~~~l~~~~~d~d~~i~iw~~~~  261 (262)
                      ...+.++.|+|+++.+++++...|+.|+|||+.+
T Consensus       320 ~~~v~~~~~~~~~~~lv~~sg~~d~~I~iwd~~~  353 (420)
T 4gga_A          320 HSQVCSILWSPHYKELISGHGFAQNQLVIWKYPT  353 (420)
T ss_dssp             SSCEEEEEEETTTTEEEEEECTTTCCEEEEETTT
T ss_pred             ccceeeeeecCCCCeEEEEEecCCCEEEEEECCC
Confidence            5678999999999998876533589999999864

>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B

Probab=99.96  E-value=3.8e-27  Score=189.96  Aligned_cols=194  Identities=21%  Similarity=0.386  Sum_probs=154.0

Q ss_pred             CCCCceeeecc------------cccceecccCcCceEEEEEccCCC-eEEEecCCCeEEEeecCCCCCCCCCCCCCCcc
Q 042146            2 SSDRSLESFRP------------YTLTQTLNGHLRAVSYVKFSHDGR-LLTSSSAEKTLLTYSLSSISNFDSTPPSPLQK   68 (262)
Q Consensus         2 s~d~~i~~~~~------------~~~~~~~~~h~~~v~~~~~~~~~~-~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~   68 (262)
                      +.||.|..|+-            ......+.+|...|.+++|+|++. +|++|+.||.|++|++........ .......
T Consensus       148 ~~dg~V~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~-~~~~~~~  226 (430)
T 2xyi_A          148 TPSSDVLVFDYTKHPSKPEPSGECQPDLRLRGHQKEGYGLSWNPNLNGYLLSASDDHTICLWDINATPKEHR-VIDAKNI  226 (430)
T ss_dssp             CSSSCEEEEEGGGSCSSCCTTCCCCCSEEEECCSSCCCCEEECTTSTTEEEEECTTSCEEEEETTSCCBGGG-EEECSEE
T ss_pred             CCCCcEEEEECCCcccccCccccCCCcEEecCCCCCeEEEEeCCCCCCeEEEEeCCCeEEEEeCCCCCCCCc-eecccee
Confidence            45788888852            467788899999999999999988 999999999999999976321000 0000111


Q ss_pred             ccCCcccc----------------ccceeEEEEecCCC---ccceecccCCcceEEEEEeCCCC-EEEeecCCCeEEEEE
Q 042146           69 FTGHEQGI----------------SDLATIRLWDVPTA---TSLKTLIGHTNYVFCINFNPQSN-RIVSDTFNETIRIWD  128 (262)
Q Consensus        69 ~~~~~~~v----------------~~~~~i~v~d~~~~---~~~~~~~~~~~~v~~~~~~~~~~-~l~~~~~dg~i~vwd  128 (262)
                      +.+|...+                ...+.|++||++++   ..+..+..|...|++++|+|+++ ++++|+.||.|++||
T Consensus       227 ~~~h~~~v~~v~~~p~~~~~l~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~~l~tg~~dg~v~vwd  306 (430)
T 2xyi_A          227 FTGHTAVVEDVAWHLLHESLFGSVADDQKLMIWDTRNNNTSKPSHTVDAHTAEVNCLSFNPYSEFILATGSADKTVALWD  306 (430)
T ss_dssp             ECCCSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCSCSSSCSEEEECCSSCEEEEEECSSCTTEEEEEETTSEEEEEE
T ss_pred             ecCCCCCEeeeEEeCCCCCEEEEEeCCCeEEEEECCCCCCCcceeEeecCCCCeEEEEeCCCCCCEEEEEeCCCeEEEEe
Confidence            11222111                12338999999987   56677788999999999999887 688999999999999


Q ss_pred             CCC-CeeeeeeecCCCCeeeEEEccCCC-EEEEEeCCCeEEEEeCCC---------------------------------
Q 042146          129 IKT-GKCLKVLPAHSDPVTAIDFNRDGT-MIVTSSYDGLYRILDAST---------------------------------  173 (262)
Q Consensus       129 ~~~-~~~~~~~~~~~~~v~~~~~~~~~~-~l~~~~~dg~i~~~d~~~---------------------------------  173 (262)
                      +++ .+++..+..|...|.+++|+|++. +|++++.|+.|++||++.                                 
T Consensus       307 ~~~~~~~~~~~~~h~~~v~~i~~sp~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~  386 (430)
T 2xyi_A          307 LRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSW  386 (430)
T ss_dssp             TTCTTSCSEEEECCSSCEEEEEECSSCTTEEEEEETTSCCEEEEGGGTTCCCCHHHHHHCCTTEEEECCCCSSCEEEEEE
T ss_pred             CCCCCCCeEEeecCCCCEEEEEECCCCCCEEEEEeCCCcEEEEeCCCCccccCccccccCCcceEEEcCCCCCCceEEEE
Confidence            997 567888889999999999999885 699999999999999753                                 


Q ss_pred             -CCcc-EEEEEcCCCeEEEEecCCC
Q 042146          174 -PNGK-FILVGTLDNTLRLWNYSTR  196 (262)
Q Consensus       174 -~~~~-~l~~~~~dg~i~i~d~~~~  196 (262)
                       ++++ +|++++.||.|++|++...
T Consensus       387 ~p~~~~~l~s~s~dg~i~iw~~~~~  411 (430)
T 2xyi_A          387 NPNEPWIICSVSEDNIMQVWQMAEN  411 (430)
T ss_dssp             CSSSTTEEEEEETTSEEEEEEECHH
T ss_pred             CCCCCCEEEEEECCCCEEEeEcccc
Confidence             5677 8999999999999998754

>4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens}

Probab=99.95  E-value=9e-26  Score=174.46  Aligned_cols=209  Identities=21%  Similarity=0.336  Sum_probs=159.2

Q ss_pred             eEEEEEccCCCeEEEecCCCeEEEeecCCCCCCCCC----CCCCCcccc--CCcccc---ccceeEEEEecCCCccceec
Q 042146           26 VSYVKFSHDGRLLTSSSAEKTLLTYSLSSISNFDST----PPSPLQKFT--GHEQGI---SDLATIRLWDVPTATSLKTL   96 (262)
Q Consensus        26 v~~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~----~~~~~~~~~--~~~~~v---~~~~~i~v~d~~~~~~~~~~   96 (262)
                      .++|+||+++ +||+| .|++|+|||+++.+.....    ....+..+.  .....+   ...+.|++||+++++.+..+
T Consensus        28 ~~~l~WS~~~-~lAvg-~D~tV~iWd~~tg~~~~~~~~~~~~~~V~~v~~~~~~~~l~sgs~Dg~v~iw~~~~~~~~~~~  105 (318)
T 4ggc_A           28 LNLVDWSSGN-VLAVA-LDNSVYLWSASSGDILQLLQMEQPGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQQQKRLRNM  105 (318)
T ss_dssp             CBCEEECTTS-EEEEE-ETTEEEEEETTTCCEEEEEECCSTTCCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEE
T ss_pred             ceEEEECCCC-EEEEE-eCCEEEEEECCCCCEEEEEEecCCCCeEEEEEECCCCCEEEEEECCCcEEEeecCCceeEEEe
Confidence            5789999986 67665 5999999998764322111    111111111  111111   12338999999999999999


Q ss_pred             ccCCcceEEEEEeCCCCEEEeecCCCeEEEEECCCC-eeeeeeecCCCCeeeEEEccCCCEEEEEeCCCeEEEEeCCC--
Q 042146           97 IGHTNYVFCINFNPQSNRIVSDTFNETIRIWDIKTG-KCLKVLPAHSDPVTAIDFNRDGTMIVTSSYDGLYRILDAST--  173 (262)
Q Consensus        97 ~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~-~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~d~~~--  173 (262)
                      .+|...+.++.+.  +..+++++.++.+++|+.... ..+..+.+|...+..+.+++++++|++++.|+.|++||++.  
T Consensus       106 ~~h~~~~~~~~~~--~~~l~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~  183 (318)
T 4ggc_A          106 TSHSARVGSLSWN--SYILSSGSRSGHIHHHDVRVAEHHVATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGE  183 (318)
T ss_dssp             ECCSSCEEEEEEE--TTEEEEEETTSEEEEEETTSSSCEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEESSCBT
T ss_pred             cCccceEEEeecC--CCEEEEEecCCceEeeecCCCceeEEEEcCccCceEEEEEcCCCCEEEEEecCcceeEEECCCCc
Confidence            9999988876654  678999999999999998765 45667788999999999999999999999999999999875  


Q ss_pred             ----------------------CCc-c--EEEEEcCCCeEEEEecCCCceeeEEeccCCceeEEEEEEecCCCeeEEccc
Q 042146          174 ----------------------PNG-K--FILVGTLDNTLRLWNYSTRKILKTYSGYTNSKYCISSTFSVTNGKYIVSHR  228 (262)
Q Consensus       174 ----------------------~~~-~--~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  228 (262)
                                            +.+ .  .+++++.++.|++||.+.........                       +.
T Consensus       184 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~i~lwd~~~~~~~~~~~-----------------------~~  240 (318)
T 4ggc_A          184 GGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLSAVD-----------------------AH  240 (318)
T ss_dssp             TBSCCSEEECCCCSCEEEEEECTTSTTEEEEEECTTTCEEEEEETTTCCEEEEEE-----------------------CS
T ss_pred             ccccceeeecccCCceEEEEecCCCCcEEEEEecCCCCEEEEEeccccccccccc-----------------------ce
Confidence                                  222 2  33567788999999999887766655                       77


Q ss_pred             cceEEEEEcCCCCeEEEeeecCCCcEEEEeecc
Q 042146          229 DPVISVASHPAKNIIASGALDNDRTMKIWTQEK  261 (262)
Q Consensus       229 ~~v~~~~~~p~~~~l~~~~~d~d~~i~iw~~~~  261 (262)
                      ..+..+.|+|++..+++++...|+.|++||+++
T Consensus       241 ~~v~~~~~~~~~~~~~~~sg~~d~~i~iwd~~~  273 (318)
T 4ggc_A          241 SQVCSILWSPHYKELISGHGFAQNQLVIWKYPT  273 (318)
T ss_dssp             SCEEEEEEETTTTEEEEEECTTTCCEEEEETTT
T ss_pred             eeeeeeeecccccceEEEEEcCCCEEEEEECCC
Confidence            789999999999988776533689999999864

>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A

Probab=99.95  E-value=2e-26  Score=179.85  Aligned_cols=157  Identities=19%  Similarity=0.394  Sum_probs=138.0

Q ss_pred             eEEEEecCCCc----cceecccCCcceEEEEEeC--CCCEEEeecCCCeEEEEECCCC---------eeeeeeecCCCCe
Q 042146           81 TIRLWDVPTAT----SLKTLIGHTNYVFCINFNP--QSNRIVSDTFNETIRIWDIKTG---------KCLKVLPAHSDPV  145 (262)
Q Consensus        81 ~i~v~d~~~~~----~~~~~~~~~~~v~~~~~~~--~~~~l~~~~~dg~i~vwd~~~~---------~~~~~~~~~~~~v  145 (262)
                      .|++||+.++.    ....+.+|...|.+++|+|  ++++|++++.||.|++||++++         +++..+..|...|
T Consensus        34 ~i~iw~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~d~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v  113 (351)
T 3f3f_A           34 HIKVFKLDKDTSNWELSDSWRAHDSSIVAIDWASPEYGRIIASASYDKTVKLWEEDPDQEECSGRRWNKLCTLNDSKGSL  113 (351)
T ss_dssp             EEEEEEECSSSCCEEEEEEEECCSSCEEEEEECCGGGCSEEEEEETTSCEEEEEECTTSCTTSSCSEEEEEEECCCSSCE
T ss_pred             eEEEEECCCCCCcceecceeccCCCcEEEEEEcCCCCCCEEEEEcCCCeEEEEecCCCcccccccCcceeeeecccCCce
Confidence            79999998763    5566788999999999999  6999999999999999999876         5677888899999


Q ss_pred             eeEEEccC--CCEEEEEeCCCeEEEEeCCC---------------------------------C---CccEEEEEcCCCe
Q 042146          146 TAIDFNRD--GTMIVTSSYDGLYRILDAST---------------------------------P---NGKFILVGTLDNT  187 (262)
Q Consensus       146 ~~~~~~~~--~~~l~~~~~dg~i~~~d~~~---------------------------------~---~~~~l~~~~~dg~  187 (262)
                      .+++|+|+  +++|++++.||.|++||++.                                 |   ++.++++++.++.
T Consensus       114 ~~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~  193 (351)
T 3f3f_A          114 YSVKFAPAHLGLKLACLGNDGILRLYDALEPSDLRSWTLTSEMKVLSIPPANHLQSDFCLSWCPSRFSPEKLAVSALEQA  193 (351)
T ss_dssp             EEEEECCGGGCSEEEEEETTCEEEEEECSSTTCTTCCEEEEEEESCSCCCSSCSCCCEEEEECCCSSSCCEEEEEETTEE
T ss_pred             eEEEEcCCCCCcEEEEecCCCcEEEecCCChHHhccccccccccccccccCCcccceeEEEeccCCCCCcEEEEecCCCc
Confidence            99999999  99999999999999999875                                 1   3889999999999


Q ss_pred             EEEEecCCCce--eeEEeccCCceeEEEEEEecCCCeeEEccccceEEEEEcCCC----CeEEEeeecCCCcEEEEeecc
Q 042146          188 LRLWNYSTRKI--LKTYSGYTNSKYCISSTFSVTNGKYIVSHRDPVISVASHPAK----NIIASGALDNDRTMKIWTQEK  261 (262)
Q Consensus       188 i~i~d~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~----~~l~~~~~d~d~~i~iw~~~~  261 (262)
                      +.+|+...++.  +..+.+                      |...|++++|+|++    .+|++++  .||.|++|++..
T Consensus       194 ~~~~~~~~~~~~~~~~~~~----------------------h~~~i~~~~~~p~~~~~~~~l~s~~--~dg~i~iwd~~~  249 (351)
T 3f3f_A          194 IIYQRGKDGKLHVAAKLPG----------------------HKSLIRSISWAPSIGRWYQLIATGC--KDGRIRIFKITE  249 (351)
T ss_dssp             EEEEECTTSCEEEEEECCC----------------------CCSCEEEEEECCCSSCSSEEEEEEE--TTSCEEEEEEEE
T ss_pred             EEEEccCCCceeeeeecCC----------------------CCcceeEEEECCCCCCcceEEEEEc--CCCeEEEEeCCC
Confidence            98888877665  444444                      88999999999998    8999999  899999999864

>4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A

Probab=99.95  E-value=6.1e-27  Score=184.78  Aligned_cols=170  Identities=12%  Similarity=0.136  Sum_probs=122.6

Q ss_pred             CCCceeeec--ccccceecccCcCceEEEEEccCCCeEEEecCCCeEEEeecCCCCCCC---CCCCCCCccc--cCCccc
Q 042146            3 SDRSLESFR--PYTLTQTLNGHLRAVSYVKFSHDGRLLTSSSAEKTLLTYSLSSISNFD---STPPSPLQKF--TGHEQG   75 (262)
Q Consensus         3 ~d~~i~~~~--~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~---~~~~~~~~~~--~~~~~~   75 (262)
                      .|++|+.|+  ..+.+..++ |.+.|.+++|+|+|++|++++.++.+.+|.........   ......+..+  ......
T Consensus       155 ~d~~i~iwd~~~~~~~~~~~-~~~~V~~v~fspdg~~l~s~s~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~fspdg~~  233 (365)
T 4h5i_A          155 VPAIMRIIDPSDLTEKFEIE-TRGEVKDLHFSTDGKVVAYITGSSLEVISTVTGSCIARKTDFDKNWSLSKINFIADDTV  233 (365)
T ss_dssp             SSCEEEEEETTTTEEEEEEE-CSSCCCEEEECTTSSEEEEECSSCEEEEETTTCCEEEEECCCCTTEEEEEEEEEETTEE
T ss_pred             CCCEEEEeECCCCcEEEEeC-CCCceEEEEEccCCceEEeccceeEEEEEeccCcceeeeecCCCCCCEEEEEEcCCCCE
Confidence            578888886  445566664 78899999999999999999966554444333211100   0001111111  111111


Q ss_pred             ccc-------ceeEEEEecCCCcc----ceecccCCcceEEEEEeCCCCEEEeecCCCeEEEEECCCCeeeeee-ecCCC
Q 042146           76 ISD-------LATIRLWDVPTATS----LKTLIGHTNYVFCINFNPQSNRIVSDTFNETIRIWDIKTGKCLKVL-PAHSD  143 (262)
Q Consensus        76 v~~-------~~~i~v~d~~~~~~----~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~-~~~~~  143 (262)
                      +..       ...+++|++.....    ...+.+|...|++++|+|++++|++|+.|++|+|||+++++++..+ .+|..
T Consensus       234 l~~~s~d~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~Spdg~~lasgs~D~~V~iwd~~~~~~~~~~~~gH~~  313 (365)
T 4h5i_A          234 LIAASLKKGKGIVLTKISIKSGNTSVLRSKQVTNRFKGITSMDVDMKGELAVLASNDNSIALVKLKDLSMSKIFKQAHSF  313 (365)
T ss_dssp             EEEEEESSSCCEEEEEEEEETTEEEEEEEEEEESSCSCEEEEEECTTSCEEEEEETTSCEEEEETTTTEEEEEETTSSSS
T ss_pred             EEEEecCCcceeEEeecccccceecceeeeeecCCCCCeEeEEECCCCCceEEEcCCCEEEEEECCCCcEEEEecCcccC
Confidence            100       01578888876543    3456788999999999999999999999999999999999998875 78999


Q ss_pred             CeeeEEEccCCCEEEEEeCCCeEEEEeCCC
Q 042146          144 PVTAIDFNRDGTMIVTSSYDGLYRILDAST  173 (262)
Q Consensus       144 ~v~~~~~~~~~~~l~~~~~dg~i~~~d~~~  173 (262)
                      +|++++|+|||++|++|+.|++|++||+..
T Consensus       314 ~V~~v~fSpdg~~laS~S~D~tvrvw~ip~  343 (365)
T 4h5i_A          314 AITEVTISPDSTYVASVSAANTIHIIKLPL  343 (365)
T ss_dssp             CEEEEEECTTSCEEEEEETTSEEEEEECCT
T ss_pred             CEEEEEECCCCCEEEEEeCCCeEEEEEcCC
Confidence            999999999999999999998888888753

>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}

Probab=99.94  E-value=3.9e-26  Score=182.28  Aligned_cols=157  Identities=19%  Similarity=0.352  Sum_probs=139.7

Q ss_pred             eEEEEecCCCccceecccCCcceEEEEEeC-CCCEEEeecCCCeEEEEECCCCeeeeeee-------------cCCCCee
Q 042146           81 TIRLWDVPTATSLKTLIGHTNYVFCINFNP-QSNRIVSDTFNETIRIWDIKTGKCLKVLP-------------AHSDPVT  146 (262)
Q Consensus        81 ~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~dg~i~vwd~~~~~~~~~~~-------------~~~~~v~  146 (262)
                      .+++|+++..+....+.+|...|++++|+| ++++|++|+.||.|++||+.+++....+.             .|...|.
T Consensus        24 ~~~v~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~  103 (408)
T 4a11_B           24 TRRVLGLELNKDRDVERIHGGGINTLDIEPVEGRYMLSGGSDGVIVLYDLENSSRQSYYTCKAVCSIGRDHPDVHRYSVE  103 (408)
T ss_dssp             HHHHHTEEECTTEEECCCCSSCEEEEEECTTTCCEEEEEETTSCEEEEECCCCSSSSCEEECEEEEECTTCTTCCSSCEE
T ss_pred             cceeeccccCcceeeeeccCCcEEEEEEecCCCCEEEEEcCCCeEEEEECCCCcccceEeccccccccccccccCCCcEE
Confidence            466778777888888889999999999999 99999999999999999999876555443             4899999


Q ss_pred             eEEEcc-CCCEEEEEeCCCeEEEEeCCC----------------------CCccEEEEEcCCCeEEEEecCCCceeeEEe
Q 042146          147 AIDFNR-DGTMIVTSSYDGLYRILDAST----------------------PNGKFILVGTLDNTLRLWNYSTRKILKTYS  203 (262)
Q Consensus       147 ~~~~~~-~~~~l~~~~~dg~i~~~d~~~----------------------~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~  203 (262)
                      +++|+| ++.+|++++.||.|++||+..                      +++.++++++.+|.|++||+++++.+..+.
T Consensus       104 ~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~  183 (408)
T 4a11_B          104 TVQWYPHDTGMFTSSSFDKTLKVWDTNTLQTADVFNFEETVYSHHMSPVSTKHCLVAVGTRGPKVQLCDLKSGSCSHILQ  183 (408)
T ss_dssp             EEEECTTCTTCEEEEETTSEEEEEETTTTEEEEEEECSSCEEEEEECSSCSSCCEEEEEESSSSEEEEESSSSCCCEEEC
T ss_pred             EEEEccCCCcEEEEEeCCCeEEEeeCCCCccceeccCCCceeeeEeecCCCCCcEEEEEcCCCeEEEEeCCCcceeeeec
Confidence            999999 778999999999999999886                      356699999999999999999999888887


Q ss_pred             ccCCceeEEEEEEecCCCeeEEccccceEEEEEcCCCC-eEEEeeecCCCcEEEEeecc
Q 042146          204 GYTNSKYCISSTFSVTNGKYIVSHRDPVISVASHPAKN-IIASGALDNDRTMKIWTQEK  261 (262)
Q Consensus       204 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~-~l~~~~~d~d~~i~iw~~~~  261 (262)
                      .                      |...|.+++|+|+++ +|++++  .||.|++|++..
T Consensus       184 ~----------------------~~~~v~~~~~~~~~~~ll~~~~--~dg~i~i~d~~~  218 (408)
T 4a11_B          184 G----------------------HRQEILAVSWSPRYDYILATAS--ADSRVKLWDVRR  218 (408)
T ss_dssp             C----------------------CCSCEEEEEECSSCTTEEEEEE--TTSCEEEEETTC
T ss_pred             C----------------------CCCcEEEEEECCCCCcEEEEEc--CCCcEEEEECCC
Confidence            6                      888999999999998 588998  899999999853

>3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A

Probab=99.94  E-value=2.8e-25  Score=174.68  Aligned_cols=190  Identities=11%  Similarity=0.147  Sum_probs=143.9

Q ss_pred             CCCceeeec--ccccceecccCcCceEEEEEccCCCeEEEecCCCeEEEeecCCC-CCCCCCCC-CCCccccCCccc---
Q 042146            3 SDRSLESFR--PYTLTQTLNGHLRAVSYVKFSHDGRLLTSSSAEKTLLTYSLSSI-SNFDSTPP-SPLQKFTGHEQG---   75 (262)
Q Consensus         3 ~d~~i~~~~--~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~iw~~~~~-~~~~~~~~-~~~~~~~~~~~~---   75 (262)
                      .|+++..|+  ..+.+..+. |..+|.+++|+++.  ++++ .|+.|++||+... ........ .....+......   
T Consensus        79 ~d~~v~iWd~~~~~~~~~~~-~~~~v~~v~~~~~~--~~~~-~~~~i~i~d~~~~~~~~~~~~~~~~~~~~s~~~la~~s  154 (355)
T 3vu4_A           79 VKEVVHIWDDVKKQDVSRIK-VDAPVKDLFLSREF--IVVS-YGDVISVFKFGNPWKRITDDIRFGGVCEFSNGLLVYSN  154 (355)
T ss_dssp             STTEEEEEETTTTEEEEEEE-CSSCEEEEEECSSE--EEEE-ETTEEEEEESSTTCCBSSCCEEEEEEEEEETTEEEEEE
T ss_pred             CccEEEEEECCCCcEEEEEE-CCCceEEEEEcCCE--EEEE-EcCEEEEEECCCCceeeEEeccCCceEEEEccEEEEeC
Confidence            467888886  455667775 67799999999874  4443 3789999999764 22211111 000001110000   


Q ss_pred             cccceeEEEEecCCCc----------------cceecccCCcceEEEEEeCCCCEEEeecCCCe-EEEEECCCCeeeeee
Q 042146           76 ISDLATIRLWDVPTAT----------------SLKTLIGHTNYVFCINFNPQSNRIVSDTFNET-IRIWDIKTGKCLKVL  138 (262)
Q Consensus        76 v~~~~~i~v~d~~~~~----------------~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~-i~vwd~~~~~~~~~~  138 (262)
                      -...+.|++||+.+++                .+..+.+|...|.+++|+|++++|++|+.||+ |++||+++++++..+
T Consensus       155 g~~~g~v~iwd~~~~~~~~~~~~~~~~~~~~p~~~~~~~h~~~v~~~~~s~~g~~l~s~s~d~~~v~iwd~~~~~~~~~~  234 (355)
T 3vu4_A          155 EFNLGQIHITKLQSSGSATTQDQGVQQKAILGKGVLIKAHTNPIKMVRLNRKSDMVATCSQDGTIIRVFKTEDGVLVREF  234 (355)
T ss_dssp             SSCTTCEEEEECCC------------------CCEEECCCSSCEEEEEECTTSSEEEEEETTCSEEEEEETTTCCEEEEE
T ss_pred             CCcCcEEEEEECCCCCccccccccccccccCcccEEEEccCCceEEEEECCCCCEEEEEeCCCCEEEEEECCCCcEEEEE
Confidence            0123479999998765                26778999999999999999999999999998 999999999999999


Q ss_pred             e-c-CCCCeeeEEEccCCCEEEEEeCCCeEEEEeCCC-------------------------------------------
Q 042146          139 P-A-HSDPVTAIDFNRDGTMIVTSSYDGLYRILDAST-------------------------------------------  173 (262)
Q Consensus       139 ~-~-~~~~v~~~~~~~~~~~l~~~~~dg~i~~~d~~~-------------------------------------------  173 (262)
                      . + |...|.+++|+|++++|++++.|++|++||++.                                           
T Consensus       235 ~~g~h~~~v~~~~~s~~~~~l~s~s~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~  314 (355)
T 3vu4_A          235 RRGLDRADVVDMKWSTDGSKLAVVSDKWTLHVFEIFNDQDNKRHALKGWINMKYFQSEWSLCNFKLSVDKHVRGCKIAWI  314 (355)
T ss_dssp             ECTTCCSCEEEEEECTTSCEEEEEETTCEEEEEESSCCSCCCSEETTTTEECCCCCCSSCSEEEECCCCTTCCCCEEEES
T ss_pred             EcCCCCCcEEEEEECCCCCEEEEEECCCEEEEEEccCCCCcccccccceeeccccccccceeEEEeccCCCCCceEEEEe
Confidence            8 5 999999999999999999999999999999853                                           


Q ss_pred             CCccEEEEEcCCCeEEEEecCCC
Q 042146          174 PNGKFILVGTLDNTLRLWNYSTR  196 (262)
Q Consensus       174 ~~~~~l~~~~~dg~i~i~d~~~~  196 (262)
                      ++++++++++.||.+++|++..+
T Consensus       315 ~d~~~l~~~~~dg~~~~~~~~~~  337 (355)
T 3vu4_A          315 SESSLVVVWPHTRMIETFKVVFD  337 (355)
T ss_dssp             SSSEEEEEETTTTEEEEEEEEEE
T ss_pred             CCCCEEEEEeCCCeEEEEEEEcC
Confidence            45678889999999999987653

>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A

Probab=99.94  E-value=4.2e-24  Score=171.32  Aligned_cols=194  Identities=11%  Similarity=0.125  Sum_probs=152.6

Q ss_pred             Cceeeecc-cccceecccCcCceEEEEEccCCCeEEEecCCC---eEEEeecCCCCCCCCCCCCCCccccCCccccccce
Q 042146            5 RSLESFRP-YTLTQTLNGHLRAVSYVKFSHDGRLLTSSSAEK---TLLTYSLSSISNFDSTPPSPLQKFTGHEQGISDLA   80 (262)
Q Consensus         5 ~~i~~~~~-~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~---~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~   80 (262)
                      ++|+.|+. ....+.+.+|...|.+++|+|+|++|++++.++   .|++|                              
T Consensus       159 ~~i~i~d~~g~~~~~l~~~~~~v~~~~~Spdg~~la~~s~~~~~~~i~~~------------------------------  208 (415)
T 2hqs_A          159 YELRVSDYDGYNQFVVHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQ------------------------------  208 (415)
T ss_dssp             EEEEEEETTSCSCEEEEEESSCEEEEEECTTSSEEEEEECTTSSCEEEEE------------------------------
T ss_pred             ceEEEEcCCCCCCEEEeCCCCcceeeEEcCCCCEEEEEEecCCCcEEEEE------------------------------
Confidence            67787763 345677888999999999999999999998875   55555                              


Q ss_pred             eEEEEecCCCccceecccCCcceEEEEEeCCCCEEE-eecCCC--eEEEEECCCCeeeeeeecCCCCeeeEEEccCCCEE
Q 042146           81 TIRLWDVPTATSLKTLIGHTNYVFCINFNPQSNRIV-SDTFNE--TIRIWDIKTGKCLKVLPAHSDPVTAIDFNRDGTMI  157 (262)
Q Consensus        81 ~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~-~~~~dg--~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l  157 (262)
                           |+.+++.. .+..|...+.+++|+|++++|+ +++.++  .|++||+++++. ..+..|...+.+++|+|+|+.|
T Consensus       209 -----d~~tg~~~-~l~~~~~~~~~~~~spdg~~la~~~~~~g~~~i~~~d~~~~~~-~~l~~~~~~~~~~~~spdg~~l  281 (415)
T 2hqs_A          209 -----TLANGAVR-QVASFPRHNGAPAFSPDGSKLAFALSKTGSLNLYVMDLASGQI-RQVTDGRSNNTEPTWFPDSQNL  281 (415)
T ss_dssp             -----ETTTCCEE-EEECCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCE-EECCCCSSCEEEEEECTTSSEE
T ss_pred             -----ECCCCcEE-EeecCCCcccCEEEcCCCCEEEEEEecCCCceEEEEECCCCCE-EeCcCCCCcccceEECCCCCEE
Confidence                 55555443 4556778899999999999877 666665  499999998875 5566788899999999999998


Q ss_pred             EEEeC-CC--eEEEEeCCC-------------------CCccEEEEEcCC---CeEEEEecCCCceeeEEeccCCceeEE
Q 042146          158 VTSSY-DG--LYRILDAST-------------------PNGKFILVGTLD---NTLRLWNYSTRKILKTYSGYTNSKYCI  212 (262)
Q Consensus       158 ~~~~~-dg--~i~~~d~~~-------------------~~~~~l~~~~~d---g~i~i~d~~~~~~~~~~~~~~~~~~~~  212 (262)
                      ++++. ++  .|.+||+..                   |++++|++++.+   ..|++||+.+++.. .+..        
T Consensus       282 ~~~s~~~g~~~i~~~d~~~~~~~~l~~~~~~~~~~~~spdG~~l~~~~~~~g~~~i~~~d~~~~~~~-~l~~--------  352 (415)
T 2hqs_A          282 AFTSDQAGRPQVYKVNINGGAPQRITWEGSQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATGGVQ-VLSS--------  352 (415)
T ss_dssp             EEEECTTSSCEEEEEETTSSCCEECCCSSSEEEEEEECTTSSEEEEEEECSSCEEEEEEETTTCCEE-ECCC--------
T ss_pred             EEEECCCCCcEEEEEECCCCCEEEEecCCCcccCeEECCCCCEEEEEECcCCceEEEEEECCCCCEE-EecC--------
Confidence            88876 44  677778765                   889999888764   58999999988763 3332        


Q ss_pred             EEEEecCCCeeEEccccceEEEEEcCCCCeEEEeeecCCC---cEEEEeecc
Q 042146          213 SSTFSVTNGKYIVSHRDPVISVASHPAKNIIASGALDNDR---TMKIWTQEK  261 (262)
Q Consensus       213 ~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~d~d~---~i~iw~~~~  261 (262)
                                    +. .+.+++|+|+++.|++++  .++   .|++|+++.
T Consensus       353 --------------~~-~~~~~~~spdg~~l~~~s--~~~~~~~l~~~d~~g  387 (415)
T 2hqs_A          353 --------------TF-LDETPSLAPNGTMVIYSS--SQGMGSVLNLVSTDG  387 (415)
T ss_dssp             --------------SS-SCEEEEECTTSSEEEEEE--EETTEEEEEEEETTS
T ss_pred             --------------CC-CcCCeEEcCCCCEEEEEE--cCCCccEEEEEECCC
Confidence                          43 788999999999999988  445   789998753

>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3

Probab=99.93  E-value=1.1e-23  Score=167.44  Aligned_cols=201  Identities=12%  Similarity=0.173  Sum_probs=154.4

Q ss_pred             CeEEEecCCCeEEEeecCCCCCCCCCCC-CCCc--cccCCcccc--c--cceeEEEEecCCCccceecccCCcceEEEEE
Q 042146           36 RLLTSSSAEKTLLTYSLSSISNFDSTPP-SPLQ--KFTGHEQGI--S--DLATIRLWDVPTATSLKTLIGHTNYVFCINF  108 (262)
Q Consensus        36 ~~l~s~~~d~~i~iw~~~~~~~~~~~~~-~~~~--~~~~~~~~v--~--~~~~i~v~d~~~~~~~~~~~~~~~~v~~~~~  108 (262)
                      .++++++.|+.|++||++..+....... ....  .+......+  .  ..+.|++||+.+++.+..+..+. .+.+++|
T Consensus         3 ~l~vs~~~d~~v~v~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~d~~i~v~d~~~~~~~~~~~~~~-~v~~~~~   81 (391)
T 1l0q_A            3 FAYIANSESDNISVIDVTSNKVTATIPVGSNPMGAVISPDGTKVYVANAHSNDVSIIDTATNNVIATVPAGS-SPQGVAV   81 (391)
T ss_dssp             EEEEEETTTTEEEEEETTTTEEEEEEECSSSEEEEEECTTSSEEEEEEGGGTEEEEEETTTTEEEEEEECSS-SEEEEEE
T ss_pred             EEEEEcCCCCEEEEEECCCCeEEEEeecCCCcceEEECCCCCEEEEECCCCCeEEEEECCCCeEEEEEECCC-CccceEE
Confidence            4688899999999999876433211111 1111  111111111  1  23489999999998888877555 8999999


Q ss_pred             eCCCCEEE-eecCCCeEEEEECCCCeeeeeeecCCCCeeeEEEccCCCEE-EEEeCCCeEEEEeCCC-------------
Q 042146          109 NPQSNRIV-SDTFNETIRIWDIKTGKCLKVLPAHSDPVTAIDFNRDGTMI-VTSSYDGLYRILDAST-------------  173 (262)
Q Consensus       109 ~~~~~~l~-~~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l-~~~~~dg~i~~~d~~~-------------  173 (262)
                      +|++++++ +++.++.|++||+++++.+..+.. ...+.+++|+|+++.+ ++++.++.|++||+..             
T Consensus        82 spdg~~l~~~~~~~~~v~v~d~~~~~~~~~~~~-~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~  160 (391)
T 1l0q_A           82 SPDGKQVYVTNMASSTLSVIDTTSNTVAGTVKT-GKSPLGLALSPDGKKLYVTNNGDKTVSVINTVTKAVINTVSVGRSP  160 (391)
T ss_dssp             CTTSSEEEEEETTTTEEEEEETTTTEEEEEEEC-SSSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEECCSSE
T ss_pred             CCCCCEEEEEECCCCEEEEEECCCCeEEEEEeC-CCCcceEEECCCCCEEEEEeCCCCEEEEEECCCCcEEEEEecCCCc
Confidence            99999775 566779999999999998888765 4568999999999977 6778899999999876             


Q ss_pred             ------CCccEE-EEEcCCCeEEEEecCCCceeeEEeccCCceeEEEEEEecCCCeeEEccccceEEEEEcCCCCeEEEe
Q 042146          174 ------PNGKFI-LVGTLDNTLRLWNYSTRKILKTYSGYTNSKYCISSTFSVTNGKYIVSHRDPVISVASHPAKNIIASG  246 (262)
Q Consensus       174 ------~~~~~l-~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~  246 (262)
                            ++++++ ++++.++.|++||+++++.+..+.                       +...+.+++|+|++++|+++
T Consensus       161 ~~~~~~~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~-----------------------~~~~~~~~~~~~~g~~l~~~  217 (391)
T 1l0q_A          161 KGIAVTPDGTKVYVANFDSMSISVIDTVTNSVIDTVK-----------------------VEAAPSGIAVNPEGTKAYVT  217 (391)
T ss_dssp             EEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEE-----------------------CSSEEEEEEECTTSSEEEEE
T ss_pred             ceEEECCCCCEEEEEeCCCCEEEEEECCCCeEEEEEe-----------------------cCCCccceEECCCCCEEEEE
Confidence                  778776 677889999999999998877765                       55678999999999999988


Q ss_pred             eec-CCCcEEEEeecc
Q 042146          247 ALD-NDRTMKIWTQEK  261 (262)
Q Consensus       247 ~~d-~d~~i~iw~~~~  261 (262)
                      +.+ .++.|++||+..
T Consensus       218 ~~~~~~~~v~~~d~~~  233 (391)
T 1l0q_A          218 NVDKYFNTVSMIDTGT  233 (391)
T ss_dssp             EECSSCCEEEEEETTT
T ss_pred             ecCcCCCcEEEEECCC
Confidence            731 279999999864

>2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A

Probab=99.93  E-value=1.3e-24  Score=165.65  Aligned_cols=153  Identities=14%  Similarity=0.113  Sum_probs=121.7

Q ss_pred             CCceeeecc---cccceecccCcCceEEEEEcc---CCCeEEEecCCCeEEEeecCCCCCCCCCCCCCCccccCCccccc
Q 042146            4 DRSLESFRP---YTLTQTLNGHLRAVSYVKFSH---DGRLLTSSSAEKTLLTYSLSSISNFDSTPPSPLQKFTGHEQGIS   77 (262)
Q Consensus         4 d~~i~~~~~---~~~~~~~~~h~~~v~~~~~~~---~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~   77 (262)
                      |++|+.|.-   .+.+..+.+|...++.++|+|   ++++|++++.|++|+|||+                         
T Consensus       156 d~~V~~~~~s~dG~~~~s~~~~~~~v~~l~fs~~~g~~~~LaSgS~D~TIkIWDl-------------------------  210 (356)
T 2w18_A          156 DQQVEVMTFAEDGGGKENQFLMPPEETILTFAEVQGMQEALLGTTIMNNIVIWNL-------------------------  210 (356)
T ss_dssp             TCEEEEEEECTTSCEEEEEEECCCSSCEEEEEEEETSTTEEEEEETTSEEEEEET-------------------------
T ss_pred             CCcEEEEEECCCCceeeeeccCCCceeeEEeeccCCCCceEEEecCCCcEEEEEC-------------------------
Confidence            777777753   567777888999999999998   7789999999999888854                         


Q ss_pred             cceeEEEEecCCCccceecccCC---cceEEEEEeCCCCEE------------EeecCCCeEEEEECCCCeeeeee----
Q 042146           78 DLATIRLWDVPTATSLKTLIGHT---NYVFCINFNPQSNRI------------VSDTFNETIRIWDIKTGKCLKVL----  138 (262)
Q Consensus        78 ~~~~i~v~d~~~~~~~~~~~~~~---~~v~~~~~~~~~~~l------------~~~~~dg~i~vwd~~~~~~~~~~----  138 (262)
                                .+++.++++.+|.   ..+.+++|+|++.++            ++|+.|++|++||+.+++.+..+    
T Consensus       211 ----------~TGk~l~tL~g~~~~v~~v~~vafSpdG~~lvs~s~~~~~w~laSGs~D~tIklWd~~tgk~l~v~~~~~  280 (356)
T 2w18_A          211 ----------KTGQLLKKMHIDDSYQASVCHKAYSEMGLLFIVLSHPCAKESESLRSPVFQLIVINPKTTLSVGVMLYCL  280 (356)
T ss_dssp             ----------TTCCEEEEEECCC---CCCEEEEEEETTEEEEEEC------------CCEEEEEEETTTTEEEEEEEECC
T ss_pred             ----------CCCcEEEEEcCCCcceeeeEEEEECCCCCEEEEeccCCCcceeeccCCCcEEEEEECCCCEEEEEEEeec
Confidence                      5677777776543   467888999999876            56888999999999999887665    


Q ss_pred             -ecCCCCeeeEEEccCCCEEEEEeCCCeEEEEeCCC---------------------CCccEEEEEcCCCeEEEEec
Q 042146          139 -PAHSDPVTAIDFNRDGTMIVTSSYDGLYRILDAST---------------------PNGKFILVGTLDNTLRLWNY  193 (262)
Q Consensus       139 -~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~d~~~---------------------~~~~~l~~~~~dg~i~i~d~  193 (262)
                       .+|...+.+..+  ++..+++++.|++|++||+.+                     |++++|++|+.|++|+|||+
T Consensus       281 p~Gh~~~~lsg~~--sg~~lASgS~DgTIkIWDl~tGk~l~tL~gH~~~vvs~vafSPDG~~LaSGS~D~TIklWd~  355 (356)
T 2w18_A          281 PPGQAGRFLEGDV--KDHCAAAILTSGTIAIWDLLLGQCTALLPPVSDQHWSFVKWSGTDSHLLAGQKDGNIFVYHY  355 (356)
T ss_dssp             CTTCCCCEEEEEE--ETTEEEEEETTSCEEEEETTTCSEEEEECCC--CCCCEEEECSSSSEEEEECTTSCEEEEEE
T ss_pred             cCCCcceeEcccc--CCCEEEEEcCCCcEEEEECCCCcEEEEecCCCCCeEEEEEECCCCCEEEEEECCCcEEEecC
Confidence             356555444443  478999999999999999887                     89999999999999999995

>2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A

Probab=99.91  E-value=3.1e-23  Score=166.97  Aligned_cols=202  Identities=16%  Similarity=0.135  Sum_probs=146.2

Q ss_pred             CcCceEEEEEccCCCeEEEecCCCeEEEeecCCCCCCCCCCCCCCccccCCccccccceeEEEEecCCCccceecccCCc
Q 042146           22 HLRAVSYVKFSHDGRLLTSSSAEKTLLTYSLSSISNFDSTPPSPLQKFTGHEQGISDLATIRLWDVPTATSLKTLIGHTN  101 (262)
Q Consensus        22 h~~~v~~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~i~v~d~~~~~~~~~~~~~~~  101 (262)
                      ....++.+++++++.++++++.++ +++|+............        +..        .+...   ..... ..+..
T Consensus        35 ~~~~~n~lavs~~~~~l~~~~~dg-v~v~~~~~~~~~~~~~~--------~~~--------~~~~~---~~~~~-~~~~~   93 (434)
T 2oit_A           35 PKERSSLLAVSNKYGLVFAGGASG-LQIFPTKNLLIQNKPGD--------DPN--------KIVDK---VQGLL-VPMKF   93 (434)
T ss_dssp             CCSCCBCEEEETTTTEEEEEETTE-EEEEEHHHHCCCCCTTC--------CTT--------CEEEC---CCCEE-ECCSS
T ss_pred             CCCCccEEEEecCCCEEEEECCCE-EEEEEchHhhhhccccc--------Ccc--------ccccc---Ccccc-ccCCC
Confidence            344689999999999999999888 88987643211100000        000        00000   11111 23567


Q ss_pred             ceEEEEEeCCCCEEE----eecCCCeEEEEECCCC--------ee---eeeeecCCCCeeeEEEccC-CCEEEEEeCCCe
Q 042146          102 YVFCINFNPQSNRIV----SDTFNETIRIWDIKTG--------KC---LKVLPAHSDPVTAIDFNRD-GTMIVTSSYDGL  165 (262)
Q Consensus       102 ~v~~~~~~~~~~~l~----~~~~dg~i~vwd~~~~--------~~---~~~~~~~~~~v~~~~~~~~-~~~l~~~~~dg~  165 (262)
                      .|.+++|+|++++|+    +|+.|+.|++||++++        ++   +..+.+|...|.+++|+|+ +.+|++++.||+
T Consensus        94 ~v~~l~~spdg~~lav~~~sgs~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~las~s~Dg~  173 (434)
T 2oit_A           94 PIHHLALSCDNLTLSACMMSSEYGSIIAFFDVRTFSNEAKQQKRPFAYHKLLKDAGGMVIDMKWNPTVPSMVAVCLADGS  173 (434)
T ss_dssp             CEEEEEECTTSCEEEEEEEETTTEEEEEEEEHHHHHCTTCSSCCCSEEEECCCSGGGSEEEEEECSSCTTEEEEEETTSC
T ss_pred             cccEEEEcCCCCEEEEEEeccCCCceEEEEEccccccCCcCCcceeeeeeccCCCCCceEEEEECCCCCCEEEEEECCCe
Confidence            899999999999999    8999999999998765        22   3455678999999999997 789999999999


Q ss_pred             EEEEeCCC--------------------CCccEEEEEcCCCeEEEEecCCCceeeEEeccCCceeEEEEEEecCCCeeEE
Q 042146          166 YRILDAST--------------------PNGKFILVGTLDNTLRLWNYSTRKILKTYSGYTNSKYCISSTFSVTNGKYIV  225 (262)
Q Consensus       166 i~~~d~~~--------------------~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  225 (262)
                      |++||++.                    +++++|++|+.||.|++||++ ++....+..+....               .
T Consensus       174 v~iwD~~~~~~~~~~~~~~~~v~~v~wspdg~~lasgs~dg~v~iwd~~-~~~~~~~~~~~~~~---------------~  237 (434)
T 2oit_A          174 IAVLQVTETVKVCATLPSTVAVTSVCWSPKGKQLAVGKQNGTVVQYLPT-LQEKKVIPCPPFYE---------------S  237 (434)
T ss_dssp             EEEEEESSSEEEEEEECGGGCEEEEEECTTSSCEEEEETTSCEEEECTT-CCEEEEECCCTTCC---------------T
T ss_pred             EEEEEcCCCcceeeccCCCCceeEEEEcCCCCEEEEEcCCCcEEEEccC-CcccccccCCcccC---------------C
Confidence            99999875                    789999999999999999998 66666655432100               0


Q ss_pred             ccccceEEEEEcCCCCeEEEeeecCCCc------EEEEeecc
Q 042146          226 SHRDPVISVASHPAKNIIASGALDNDRT------MKIWTQEK  261 (262)
Q Consensus       226 ~~~~~v~~~~~~p~~~~l~~~~~d~d~~------i~iw~~~~  261 (262)
                      .|...|.+++|++++.++++.+. .||.      +++|++.+
T Consensus       238 ~~~~~v~~v~w~~~~~~l~~~~~-~dg~~~~~~~v~i~~l~~  278 (434)
T 2oit_A          238 DHPVRVLDVLWIGTYVFAIVYAA-ADGTLETSPDVVMALLPK  278 (434)
T ss_dssp             TSCEEEEEEEEEETTEEEEEEEE-TTCCSSSCCEEEEEECCC
T ss_pred             CCceeEEEEEEecCceEEEEEcc-CCCccCCCCceEEEEecc
Confidence            03458999999999888866542 3433      88999864

>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A*

Probab=99.91  E-value=2.1e-22  Score=166.34  Aligned_cols=235  Identities=11%  Similarity=0.126  Sum_probs=170.6

Q ss_pred             CCCceeeec--ccccceecccCcCceEEEEEccCCCeEEEecCCCeEEEeec--CCCCCCCCCC-CCCCc--cccC----
Q 042146            3 SDRSLESFR--PYTLTQTLNGHLRAVSYVKFSHDGRLLTSSSAEKTLLTYSL--SSISNFDSTP-PSPLQ--KFTG----   71 (262)
Q Consensus         3 ~d~~i~~~~--~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~iw~~--~~~~~~~~~~-~~~~~--~~~~----   71 (262)
                      .|+++..|+  ..+++.++..+.. +.+++|+|+|++|++++.|++|++||+  .+........ .....  .+..    
T Consensus       157 ~d~~V~v~D~~t~~~~~~i~~g~~-~~~v~~spdg~~l~v~~~d~~V~v~D~~~~t~~~~~~i~~g~~p~~va~sp~~~~  235 (543)
T 1nir_A          157 DAGQIALVDGDSKKIVKVIDTGYA-VHISRMSASGRYLLVIGRDARIDMIDLWAKEPTKVAEIKIGIEARSVESSKFKGY  235 (543)
T ss_dssp             GGTEEEEEETTTCCEEEEEECSTT-EEEEEECTTSCEEEEEETTSEEEEEETTSSSCEEEEEEECCSEEEEEEECCSTTC
T ss_pred             CCCeEEEEECCCceEEEEEecCcc-cceEEECCCCCEEEEECCCCeEEEEECcCCCCcEEEEEecCCCcceEEeCCCcCC
Confidence            467787775  4567788874333 889999999999999999999999999  4432211111 11111  1111    


Q ss_pred             Cccccc----cceeEEEEecCCCccceeccc----------CC-cceEEEEEeCCCCE-EEeecCCCeEEEEECCCCeee
Q 042146           72 HEQGIS----DLATIRLWDVPTATSLKTLIG----------HT-NYVFCINFNPQSNR-IVSDTFNETIRIWDIKTGKCL  135 (262)
Q Consensus        72 ~~~~v~----~~~~i~v~d~~~~~~~~~~~~----------~~-~~v~~~~~~~~~~~-l~~~~~dg~i~vwd~~~~~~~  135 (262)
                      ....+.    ....|.+||..+++++..+..          |. ..+..+.++|+++. +++...++.|.+||+.+.+.+
T Consensus       236 dg~~l~v~~~~~~~v~v~D~~t~~~~~~i~~~g~~~~~~~~~~~~~v~~i~~s~~~~~~~vs~~~~g~i~vvd~~~~~~l  315 (543)
T 1nir_A          236 EDRYTIAGAYWPPQFAIMDGETLEPKQIVSTRGMTVDTQTYHPEPRVAAIIASHEHPEFIVNVKETGKVLLVNYKDIDNL  315 (543)
T ss_dssp             TTTEEEEEEEESSEEEEEETTTCCEEEEEECCEECSSSCCEESCCCEEEEEECSSSSEEEEEETTTTEEEEEECTTSSSC
T ss_pred             CCCEEEEEEccCCeEEEEeccccccceeecccCcccCccccccCCceEEEEECCCCCEEEEEECCCCeEEEEEecCCCcc
Confidence            111111    123899999999988877654          22 36889999997654 567788999999999876544


Q ss_pred             e--eeecCCCCeeeEEEccCCCEEEEEe-CCCeEEEEeCCC-----------------------CC-ccEEEEEc-CCCe
Q 042146          136 K--VLPAHSDPVTAIDFNRDGTMIVTSS-YDGLYRILDAST-----------------------PN-GKFILVGT-LDNT  187 (262)
Q Consensus       136 ~--~~~~~~~~v~~~~~~~~~~~l~~~~-~dg~i~~~d~~~-----------------------~~-~~~l~~~~-~dg~  187 (262)
                      .  .+. +...+.++.|+|++++|++++ .+++|.+||+.+                       |+ +..++++. .|++
T Consensus       316 ~~~~i~-~~~~~~~~~~spdg~~l~va~~~~~~v~v~D~~tg~l~~~i~~g~~ph~g~g~~~~~p~~g~~~~s~~~~d~~  394 (543)
T 1nir_A          316 TVTSIG-AAPFLHDGGWDSSHRYFMTAANNSNKVAVIDSKDRRLSALVDVGKTPHPGRGANFVHPKYGPVWSTSHLGDGS  394 (543)
T ss_dssp             EEEEEE-CCSSCCCEEECTTSCEEEEEEGGGTEEEEEETTTTEEEEEEECSSSBCCTTCEEEEETTTEEEEEEEBSSSSE
T ss_pred             eeEEec-cCcCccCceECCCCCEEEEEecCCCeEEEEECCCCeEEEeeccCCCCCCCCCcccCCCCCccEEEeccCCCce
Confidence            3  443 566788999999999776654 689999999876                       33 55666665 6799


Q ss_pred             EEEEecCC-------CceeeEEeccCCceeEEEEEEecCCCeeEEccccceEEEEEcCCCCeEEEeee-cC----CCcEE
Q 042146          188 LRLWNYST-------RKILKTYSGYTNSKYCISSTFSVTNGKYIVSHRDPVISVASHPAKNIIASGAL-DN----DRTMK  255 (262)
Q Consensus       188 i~i~d~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~-d~----d~~i~  255 (262)
                      |.+||..+       .++++++..                      |...+..++++|+++.|++++. +.    +++|.
T Consensus       395 V~v~d~~~~~~~~~~~~~v~~l~~----------------------~g~~~~~v~~~pdg~~l~v~~~~~~~~~~~~~v~  452 (543)
T 1nir_A          395 ISLIGTDPKNHPQYAWKKVAELQG----------------------QGGGSLFIKTHPKSSHLYVDTTFNPDARISQSVA  452 (543)
T ss_dssp             EEEEECCTTTCTTTBTSEEEEEEC----------------------SCSCCCCEECCTTCCEEEECCTTCSSHHHHTCEE
T ss_pred             EEEEEeCCCCCchhcCeEEEEEEc----------------------CCCCceEEEcCCCCCcEEEecCCCCCcccCceEE
Confidence            99999988       888888887                      6677888999999999999851 01    57999


Q ss_pred             EEeecc
Q 042146          256 IWTQEK  261 (262)
Q Consensus       256 iw~~~~  261 (262)
                      +||+++
T Consensus       453 v~d~~~  458 (543)
T 1nir_A          453 VFDLKN  458 (543)
T ss_dssp             EEETTC
T ss_pred             EEECCC
Confidence            999864

>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1

Probab=99.91  E-value=2.4e-22  Score=156.72  Aligned_cols=232  Identities=10%  Similarity=0.139  Sum_probs=154.8

Q ss_pred             CCCceeeecc---c--ccceecccCcCceEEEEEccCCCeEEEecCC-CeEEEeecC--CCCCC--C-CCCCCCCc--cc
Q 042146            3 SDRSLESFRP---Y--TLTQTLNGHLRAVSYVKFSHDGRLLTSSSAE-KTLLTYSLS--SISNF--D-STPPSPLQ--KF   69 (262)
Q Consensus         3 ~d~~i~~~~~---~--~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d-~~i~iw~~~--~~~~~--~-~~~~~~~~--~~   69 (262)
                      .|+.+..|+.   .  +....+ .|...+.+++|+|++++|++++.+ +.|.+|+++  .....  . ........  .+
T Consensus        13 ~~~~v~~~~~~~~~~~~~~~~~-~~~~~~~~~~~spdg~~l~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   91 (343)
T 1ri6_A           13 ESQQIHVWNLNHEGALTLTQVV-DVPGQVQPMVVSPDKRYLYVGVRPEFRVLAYRIAPDDGALTFAAESALPGSLTHIST   91 (343)
T ss_dssp             GGTEEEEEEECTTSCEEEEEEE-ECSSCCCCEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEECSSCCSEEEE
T ss_pred             CCCeEEEEEECCCCcEEEeeeE-ecCCCCceEEECCCCCEEEEeecCCCeEEEEEecCCCCceeeccccccCCCCcEEEE
Confidence            4778888853   2  233333 477889999999999988888876 999999987  22110  0 00000111  11


Q ss_pred             cCCcccccc----ceeEEEEecC---CCccceecccCCcceEEEEEeCCCCEEEeec-CCCeEEEEECCC-Ceeee----
Q 042146           70 TGHEQGISD----LATIRLWDVP---TATSLKTLIGHTNYVFCINFNPQSNRIVSDT-FNETIRIWDIKT-GKCLK----  136 (262)
Q Consensus        70 ~~~~~~v~~----~~~i~v~d~~---~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~dg~i~vwd~~~-~~~~~----  136 (262)
                      ......+..    .+.|.+||+.   ..+....+.. ...+.+++|+|+++++++++ .++.|.+||+.+ ++...    
T Consensus        92 s~dg~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~-~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~  170 (343)
T 1ri6_A           92 DHQGQFVFVGSYNAGNVSVTRLEDGLPVGVVDVVEG-LDGCHSANISPDNRTLWVPALKQDRICLFTVSDDGHLVAQDPA  170 (343)
T ss_dssp             CTTSSEEEEEETTTTEEEEEEEETTEEEEEEEEECC-CTTBCCCEECTTSSEEEEEEGGGTEEEEEEECTTSCEEEEEEE
T ss_pred             cCCCCEEEEEecCCCeEEEEECCCCccccccccccC-CCCceEEEECCCCCEEEEecCCCCEEEEEEecCCCceeeeccc
Confidence            111111211    2379999994   3334444443 34588999999999887776 889999999987 54432    


Q ss_pred             eeec-CCCCeeeEEEccCCCEEEEEe-CCCeEEEEeCCC------------------------------CCccEEE-EEc
Q 042146          137 VLPA-HSDPVTAIDFNRDGTMIVTSS-YDGLYRILDAST------------------------------PNGKFIL-VGT  183 (262)
Q Consensus       137 ~~~~-~~~~v~~~~~~~~~~~l~~~~-~dg~i~~~d~~~------------------------------~~~~~l~-~~~  183 (262)
                      .+.. ....+..++|+|+++++++++ .++.|.+|++..                              +++++|+ ++.
T Consensus       171 ~~~~~~~~~~~~~~~~pdg~~l~~~~~~~~~i~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~s~dg~~l~v~~~  250 (343)
T 1ri6_A          171 EVTTVEGAGPRHMVFHPNEQYAYCVNELNSSVDVWELKDPHGNIECVQTLDMMPENFSDTRWAADIHITPDGRHLYACDR  250 (343)
T ss_dssp             EEECSTTCCEEEEEECTTSSEEEEEETTTTEEEEEESSCTTSCCEEEEEEECSCTTCCSCCCEEEEEECTTSSEEEEEET
T ss_pred             ccccCCCCCcceEEECCCCCEEEEEeCCCCEEEEEEecCCCCcEEEEeeccccCccccccCCccceEECCCCCEEEEEec
Confidence            2222 345788999999999776554 889999999842                              5676666 455


Q ss_pred             CCCeEEEEecC--CC--ceeeEEeccCCceeEEEEEEecCCCeeEEccccceEEEEEcCCCCeEEEeeecCCCcEEEEee
Q 042146          184 LDNTLRLWNYS--TR--KILKTYSGYTNSKYCISSTFSVTNGKYIVSHRDPVISVASHPAKNIIASGALDNDRTMKIWTQ  259 (262)
Q Consensus       184 ~dg~i~i~d~~--~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~d~d~~i~iw~~  259 (262)
                      .++.|.+||+.  ++  +.+..+..                      + ..+..++|+|++++|++++. .++.|.+|++
T Consensus       251 ~~~~i~v~d~~~~~~~~~~~~~~~~----------------------~-~~~~~~~~s~dg~~l~~~~~-~~~~v~v~~~  306 (343)
T 1ri6_A          251 TASLITVFSVSEDGSVLSKEGFQPT----------------------E-TQPRGFNVDHSGKYLIAAGQ-KSHHISVYEI  306 (343)
T ss_dssp             TTTEEEEEEECTTSCCEEEEEEEEC----------------------S-SSCCCEEECTTSSEEEEECT-TTCEEEEEEE
T ss_pred             CCCEEEEEEEcCCCCceEEeeeecC----------------------C-CccceEEECCCCCEEEEecC-CCCeEEEEEE
Confidence            78999999998  22  33333332                      2 23789999999998888763 3799999977


Q ss_pred             c
Q 042146          260 E  260 (262)
Q Consensus       260 ~  260 (262)
                      +
T Consensus       307 d  307 (343)
T 1ri6_A          307 V  307 (343)
T ss_dssp             E
T ss_pred             c
Confidence            5

>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A

Probab=99.90  E-value=1.2e-22  Score=162.91  Aligned_cols=196  Identities=9%  Similarity=0.086  Sum_probs=146.8

Q ss_pred             ceeeecc----cccc--eecccCcCceEEEEEccC--------------CCeEEEecCC------CeEEEeecCCCCCCC
Q 042146            6 SLESFRP----YTLT--QTLNGHLRAVSYVKFSHD--------------GRLLTSSSAE------KTLLTYSLSSISNFD   59 (262)
Q Consensus         6 ~i~~~~~----~~~~--~~~~~h~~~v~~~~~~~~--------------~~~l~s~~~d------~~i~iw~~~~~~~~~   59 (262)
                      +++.|+.    .+.+  ..+.+|...+..+++++.              +..++.++.+      +.|++|         
T Consensus        94 ~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~g~~~~~~~~l~~~s~~~~~~~~~~i~i~---------  164 (415)
T 2hqs_A           94 AYQLVDTGGAPGTVLAQNSYKVNKQWLRYAGHTASDEVFEKLTGIKGAFRTRIAYVVQTNGGQFPYELRVS---------  164 (415)
T ss_dssp             EEEEEECSSSTTCEEEEEEEEECGGGHHHHHHHHHHHHHHHHHSSCCCTTCEEEEEEECSSSSCCEEEEEE---------
T ss_pred             EEEEEeCCCCCCCEEeeeEEEcChhHHHHHHHHHHHHHHHHHcCCCCcCCCEEEEEEecCCCCccceEEEE---------
Confidence            6777765    3333  457888888888887751              4556655543      455555         


Q ss_pred             CCCCCCCccccCCccccccceeEEEEecCCCccceecccCCcceEEEEEeCCCCEEEeecCCC---eEEEEECCCCeeee
Q 042146           60 STPPSPLQKFTGHEQGISDLATIRLWDVPTATSLKTLIGHTNYVFCINFNPQSNRIVSDTFNE---TIRIWDIKTGKCLK  136 (262)
Q Consensus        60 ~~~~~~~~~~~~~~~~v~~~~~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg---~i~vwd~~~~~~~~  136 (262)
                                                |+. +.....+..|...+.+++|+|++++|++++.++   .|++||+++++.. 
T Consensus       165 --------------------------d~~-g~~~~~l~~~~~~v~~~~~Spdg~~la~~s~~~~~~~i~~~d~~tg~~~-  216 (415)
T 2hqs_A          165 --------------------------DYD-GYNQFVVHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVR-  216 (415)
T ss_dssp             --------------------------ETT-SCSCEEEEEESSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCEE-
T ss_pred             --------------------------cCC-CCCCEEEeCCCCcceeeEEcCCCCEEEEEEecCCCcEEEEEECCCCcEE-
Confidence                                      544 344566677888999999999999999998875   9999999988765 


Q ss_pred             eeecCCCCeeeEEEccCCCEEE-EEeCCCe--EEEEeCCC-------------------CCccEEEEEcC-CC--eEEEE
Q 042146          137 VLPAHSDPVTAIDFNRDGTMIV-TSSYDGL--YRILDAST-------------------PNGKFILVGTL-DN--TLRLW  191 (262)
Q Consensus       137 ~~~~~~~~v~~~~~~~~~~~l~-~~~~dg~--i~~~d~~~-------------------~~~~~l~~~~~-dg--~i~i~  191 (262)
                      .+..|...+.+++|+|+|+.|+ +++.++.  |++||+.+                   |++++|++++. ++  .|++|
T Consensus       217 ~l~~~~~~~~~~~~spdg~~la~~~~~~g~~~i~~~d~~~~~~~~l~~~~~~~~~~~~spdg~~l~~~s~~~g~~~i~~~  296 (415)
T 2hqs_A          217 QVASFPRHNGAPAFSPDGSKLAFALSKTGSLNLYVMDLASGQIRQVTDGRSNNTEPTWFPDSQNLAFTSDQAGRPQVYKV  296 (415)
T ss_dssp             EEECCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCEEECCCCSSCEEEEEECTTSSEEEEEECTTSSCEEEEE
T ss_pred             EeecCCCcccCEEEcCCCCEEEEEEecCCCceEEEEECCCCCEEeCcCCCCcccceEECCCCCEEEEEECCCCCcEEEEE
Confidence            4566888999999999999877 6666654  99999875                   78998888775 44  68888


Q ss_pred             ecCCCceeeEEeccCCceeEEEEEEecCCCeeEEccccceEEEEEcCCCCeEEEeeec-CCCcEEEEeecc
Q 042146          192 NYSTRKILKTYSGYTNSKYCISSTFSVTNGKYIVSHRDPVISVASHPAKNIIASGALD-NDRTMKIWTQEK  261 (262)
Q Consensus       192 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~d-~d~~i~iw~~~~  261 (262)
                      |+.+++.. .+..                      +...+.+++|+|++++|++++.+ .+..|++|+++.
T Consensus       297 d~~~~~~~-~l~~----------------------~~~~~~~~~~spdG~~l~~~~~~~g~~~i~~~d~~~  344 (415)
T 2hqs_A          297 NINGGAPQ-RITW----------------------EGSQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLAT  344 (415)
T ss_dssp             ETTSSCCE-ECCC----------------------SSSEEEEEEECTTSSEEEEEEECSSCEEEEEEETTT
T ss_pred             ECCCCCEE-EEec----------------------CCCcccCeEECCCCCEEEEEECcCCceEEEEEECCC
Confidence            98877643 3332                      55678899999999999988732 125899999864

>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str}

Probab=99.90  E-value=2.2e-22  Score=153.57  Aligned_cols=199  Identities=15%  Similarity=0.183  Sum_probs=144.0

Q ss_pred             CCCceeeeccc-ccceecccCcCceEEEEEccCCCeEEEecCCCeEEEeecCCCCCCCCCCCCCCccccCCcccccccee
Q 042146            3 SDRSLESFRPY-TLTQTLNGHLRAVSYVKFSHDGRLLTSSSAEKTLLTYSLSSISNFDSTPPSPLQKFTGHEQGISDLAT   81 (262)
Q Consensus         3 ~d~~i~~~~~~-~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~   81 (262)
                      .|++|+.|+.. .....+..|...|.+++|+|++++|++++ ++.|++||++                            
T Consensus        20 ~~~~i~~~d~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~-~~~i~~~d~~----------------------------   70 (297)
T 2ojh_A           20 MRSSIEIFNIRTRKMRVVWQTPELFEAPNWSPDGKYLLLNS-EGLLYRLSLA----------------------------   70 (297)
T ss_dssp             CCEEEEEEETTTTEEEEEEEESSCCEEEEECTTSSEEEEEE-TTEEEEEESS----------------------------
T ss_pred             cceeEEEEeCCCCceeeeccCCcceEeeEECCCCCEEEEEc-CCeEEEEeCC----------------------------
Confidence            57788888743 23445667899999999999999999987 6777777553                            


Q ss_pred             EEEEecCC-CccceecccC-CcceEEEEEeCCCCEEEeec--CCC--eEEEEECCCCeeeeeeecCCCCeeeEEEccCCC
Q 042146           82 IRLWDVPT-ATSLKTLIGH-TNYVFCINFNPQSNRIVSDT--FNE--TIRIWDIKTGKCLKVLPAHSDPVTAIDFNRDGT  155 (262)
Q Consensus        82 i~v~d~~~-~~~~~~~~~~-~~~v~~~~~~~~~~~l~~~~--~dg--~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~  155 (262)
                             + ++.......+ ...+.+++|+|+++++++++  .++  .|..+++.+++ ...+.. ...+..++|+|+++
T Consensus        71 -------~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~l~~~~~~~~~-~~~~~~-~~~~~~~~~spdg~  141 (297)
T 2ojh_A           71 -------GDPSPEKVDTGFATICNNDHGISPDGALYAISDKVEFGKSAIYLLPSTGGT-PRLMTK-NLPSYWHGWSPDGK  141 (297)
T ss_dssp             -------SCCSCEECCCTTCCCBCSCCEECTTSSEEEEEECTTTSSCEEEEEETTCCC-CEECCS-SSSEEEEEECTTSS
T ss_pred             -------CCCCceEeccccccccccceEECCCCCEEEEEEeCCCCcceEEEEECCCCc-eEEeec-CCCccceEECCCCC
Confidence                   3 3333333333 36788899999999999988  334  45555555554 344433 34589999999999


Q ss_pred             EEE-EEeCCCeEEEEeCCC---------------------CCccEEEEEc-CCCeEEEEecC-CCceeeEEeccCCceeE
Q 042146          156 MIV-TSSYDGLYRILDAST---------------------PNGKFILVGT-LDNTLRLWNYS-TRKILKTYSGYTNSKYC  211 (262)
Q Consensus       156 ~l~-~~~~dg~i~~~d~~~---------------------~~~~~l~~~~-~dg~i~i~d~~-~~~~~~~~~~~~~~~~~  211 (262)
                      .|+ ++..++.+.+|++..                     |++++|+.++ .++.+++|++. .+..+..+..       
T Consensus       142 ~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~i~~~~~~~~~~~~~~~-------  214 (297)
T 2ojh_A          142 SFTYCGIRDQVFDIYSMDIDSGVETRLTHGEGRNDGPDYSPDGRWIYFNSSRTGQMQIWRVRVDGSSVERITD-------  214 (297)
T ss_dssp             EEEEEEEETTEEEEEEEETTTCCEEECCCSSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTSSCEEECCC-------
T ss_pred             EEEEEECCCCceEEEEEECCCCcceEcccCCCccccceECCCCCEEEEEecCCCCccEEEECCCCCCcEEEec-------
Confidence            877 778899999998532                     7888777665 58889999876 4555555544       


Q ss_pred             EEEEEecCCCeeEEccccceEEEEEcCCCCeEEEeeecC---------CCcEEEEeecc
Q 042146          212 ISSTFSVTNGKYIVSHRDPVISVASHPAKNIIASGALDN---------DRTMKIWTQEK  261 (262)
Q Consensus       212 ~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~d~---------d~~i~iw~~~~  261 (262)
                                     +...+..++|+|++++|++++.+.         ++.|++|+++.
T Consensus       215 ---------------~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~l~~~d~~~  258 (297)
T 2ojh_A          215 ---------------SAYGDWFPHPSPSGDKVVFVSYDADVFDHPRDLDVRVQLMDMDG  258 (297)
T ss_dssp             ---------------CSEEEEEEEECTTSSEEEEEEEETTCCSCCSSEEEEEEEEETTS
T ss_pred             ---------------CCcccCCeEECCCCCEEEEEEcCCCCCcccccCceEEEEEecCC
Confidence                           666788999999999999888321         15699999764

>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}

Probab=99.89  E-value=3.9e-21  Score=149.47  Aligned_cols=198  Identities=11%  Similarity=0.131  Sum_probs=146.7

Q ss_pred             CCCceeeec--ccccceecccCcCceEEEEEccCCCeEEEecC-CCeEEEeecCCCCCCCCCCCCCCccccCCccccccc
Q 042146            3 SDRSLESFR--PYTLTQTLNGHLRAVSYVKFSHDGRLLTSSSA-EKTLLTYSLSSISNFDSTPPSPLQKFTGHEQGISDL   79 (262)
Q Consensus         3 ~d~~i~~~~--~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~-d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~   79 (262)
                      .+++|..|+  ..+....+..+...+ +++|+|+++++++++. ++.|.+||+                           
T Consensus        18 ~~~~v~~~d~~~~~~~~~~~~~~~~~-~~~~s~dg~~l~~~~~~~~~i~~~d~---------------------------   69 (331)
T 3u4y_A           18 HLRRISFFSTDTLEILNQITLGYDFV-DTAITSDCSNVVVTSDFCQTLVQIET---------------------------   69 (331)
T ss_dssp             GGTEEEEEETTTCCEEEEEECCCCEE-EEEECSSSCEEEEEESTTCEEEEEEC---------------------------
T ss_pred             CCCeEEEEeCcccceeeeEEccCCcc-eEEEcCCCCEEEEEeCCCCeEEEEEC---------------------------
Confidence            467777775  455666666666777 9999999997666654 777777754                           


Q ss_pred             eeEEEEecCCCcc-ceecccCCcceEEEEEeCCCCEEEeecCCC---eEEEEECCCCeeeeeeecCCCCeeeEEEccCCC
Q 042146           80 ATIRLWDVPTATS-LKTLIGHTNYVFCINFNPQSNRIVSDTFNE---TIRIWDIKTGKCLKVLPAHSDPVTAIDFNRDGT  155 (262)
Q Consensus        80 ~~i~v~d~~~~~~-~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg---~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~  155 (262)
                              .+++. ...+..+..+..+++|+|++++++++..++   .|.+||+++++.+..+.. .....+++|+|+|+
T Consensus        70 --------~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~i~v~d~~~~~~~~~~~~-~~~~~~~~~spdg~  140 (331)
T 3u4y_A           70 --------QLEPPKVVAIQEGQSSMADVDITPDDQFAVTVTGLNHPFNMQSYSFLKNKFISTIPI-PYDAVGIAISPNGN  140 (331)
T ss_dssp             --------SSSSCEEEEEEECSSCCCCEEECTTSSEEEECCCSSSSCEEEEEETTTTEEEEEEEC-CTTEEEEEECTTSS
T ss_pred             --------CCCceeEEecccCCCCccceEECCCCCEEEEecCCCCcccEEEEECCCCCeEEEEEC-CCCccceEECCCCC
Confidence                    34444 444555555555599999999999666553   899999999998887764 44569999999998


Q ss_pred             EEEEE-eCCCe-EEEEeCCC------------------------CCccEEE-EEcCCCeEEEEecCCCce---eeEEecc
Q 042146          156 MIVTS-SYDGL-YRILDAST------------------------PNGKFIL-VGTLDNTLRLWNYSTRKI---LKTYSGY  205 (262)
Q Consensus       156 ~l~~~-~~dg~-i~~~d~~~------------------------~~~~~l~-~~~~dg~i~i~d~~~~~~---~~~~~~~  205 (262)
                      +++++ ..++. +.+|++..                        |++++++ ++..++.|++||+.+++.   +..+.  
T Consensus       141 ~l~~~~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~d~~~~~~~~~~~~~~--  218 (331)
T 3u4y_A          141 GLILIDRSSANTVRRFKIDADGVLFDTGQEFISGGTRPFNITFTPDGNFAFVANLIGNSIGILETQNPENITLLNAVG--  218 (331)
T ss_dssp             CEEEEEETTTTEEEEEEECTTCCEEEEEEEEECSSSSEEEEEECTTSSEEEEEETTTTEEEEEECSSTTSCEEEEEEE--
T ss_pred             EEEEEecCCCceEEEEEECCCCcEeecCCccccCCCCccceEECCCCCEEEEEeCCCCeEEEEECCCCcccceeeecc--
Confidence            66555 55578 99988542                        7887554 455789999999999888   66555  


Q ss_pred             CCceeEEEEEEecCCCeeEEccccceEEEEEcCCCCeEEEeeecCCCcEEEEeecc
Q 042146          206 TNSKYCISSTFSVTNGKYIVSHRDPVISVASHPAKNIIASGALDNDRTMKIWTQEK  261 (262)
Q Consensus       206 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~d~d~~i~iw~~~~  261 (262)
                                           ....+..++|+|++++|+.++. .++.|.+|++..
T Consensus       219 ---------------------~~~~~~~~~~spdg~~l~v~~~-~~~~i~~~d~~~  252 (331)
T 3u4y_A          219 ---------------------TNNLPGTIVVSRDGSTVYVLTE-STVDVFNFNQLS  252 (331)
T ss_dssp             ---------------------CSSCCCCEEECTTSSEEEEECS-SEEEEEEEETTT
T ss_pred             ---------------------CCCCCceEEECCCCCEEEEEEc-CCCEEEEEECCC
Confidence                                 3356678999999997766652 478899999763

>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A*

Probab=99.88  E-value=9.3e-21  Score=156.54  Aligned_cols=242  Identities=10%  Similarity=0.134  Sum_probs=165.4

Q ss_pred             CCCceeeecc----cccceecccCcCceEEEEEcc----CCCeEEEecC-CCeEEEeecCCCCCCCCCCC----------
Q 042146            3 SDRSLESFRP----YTLTQTLNGHLRAVSYVKFSH----DGRLLTSSSA-EKTLLTYSLSSISNFDSTPP----------   63 (262)
Q Consensus         3 ~d~~i~~~~~----~~~~~~~~~h~~~v~~~~~~~----~~~~l~s~~~-d~~i~iw~~~~~~~~~~~~~----------   63 (262)
                      .|++|..|+.    .+.+.++. +...+..++|+|    +|+++++++. +++|.+||..+.+.......          
T Consensus       198 ~d~~V~v~D~~~~t~~~~~~i~-~g~~p~~va~sp~~~~dg~~l~v~~~~~~~v~v~D~~t~~~~~~i~~~g~~~~~~~~  276 (543)
T 1nir_A          198 RDARIDMIDLWAKEPTKVAEIK-IGIEARSVESSKFKGYEDRYTIAGAYWPPQFAIMDGETLEPKQIVSTRGMTVDTQTY  276 (543)
T ss_dssp             TTSEEEEEETTSSSCEEEEEEE-CCSEEEEEEECCSTTCTTTEEEEEEEESSEEEEEETTTCCEEEEEECCEECSSSCCE
T ss_pred             CCCeEEEEECcCCCCcEEEEEe-cCCCcceEEeCCCcCCCCCEEEEEEccCCeEEEEeccccccceeecccCcccCcccc
Confidence            4677777765    45666776 445679999999    9999999884 89999999866432211110          


Q ss_pred             ----CCCccccCCccc--c---ccceeEEEEecCCCccce--ecccCCcceEEEEEeCCCCEEEee-cCCCeEEEEECCC
Q 042146           64 ----SPLQKFTGHEQG--I---SDLATIRLWDVPTATSLK--TLIGHTNYVFCINFNPQSNRIVSD-TFNETIRIWDIKT  131 (262)
Q Consensus        64 ----~~~~~~~~~~~~--v---~~~~~i~v~d~~~~~~~~--~~~~~~~~v~~~~~~~~~~~l~~~-~~dg~i~vwd~~~  131 (262)
                          ........+...  +   ...+.|.+||..+.+.+.  .+ .+...+..+.|+|++++++++ ..+++|.+||+.+
T Consensus       277 ~~~~~v~~i~~s~~~~~~~vs~~~~g~i~vvd~~~~~~l~~~~i-~~~~~~~~~~~spdg~~l~va~~~~~~v~v~D~~t  355 (543)
T 1nir_A          277 HPEPRVAAIIASHEHPEFIVNVKETGKVLLVNYKDIDNLTVTSI-GAAPFLHDGGWDSSHRYFMTAANNSNKVAVIDSKD  355 (543)
T ss_dssp             ESCCCEEEEEECSSSSEEEEEETTTTEEEEEECTTSSSCEEEEE-ECCSSCCCEEECTTSCEEEEEEGGGTEEEEEETTT
T ss_pred             ccCCceEEEEECCCCCEEEEEECCCCeEEEEEecCCCcceeEEe-ccCcCccCceECCCCCEEEEEecCCCeEEEEECCC
Confidence                000001111111  1   122389999998766544  33 355668889999999987654 5688999999999


Q ss_pred             Ceeeeeeec----CCCCeeeEEEccC-CCEEEEEe-CCCeEEEEeCCC---------------------------CCccE
Q 042146          132 GKCLKVLPA----HSDPVTAIDFNRD-GTMIVTSS-YDGLYRILDAST---------------------------PNGKF  178 (262)
Q Consensus       132 ~~~~~~~~~----~~~~v~~~~~~~~-~~~l~~~~-~dg~i~~~d~~~---------------------------~~~~~  178 (262)
                      ++++..+..    |.+....+ ++|+ +..++++. .|++|.+||+..                           |++++
T Consensus       356 g~l~~~i~~g~~ph~g~g~~~-~~p~~g~~~~s~~~~d~~V~v~d~~~~~~~~~~~~~v~~l~~~g~~~~~v~~~pdg~~  434 (543)
T 1nir_A          356 RRLSALVDVGKTPHPGRGANF-VHPKYGPVWSTSHLGDGSISLIGTDPKNHPQYAWKKVAELQGQGGGSLFIKTHPKSSH  434 (543)
T ss_dssp             TEEEEEEECSSSBCCTTCEEE-EETTTEEEEEEEBSSSSEEEEEECCTTTCTTTBTSEEEEEECSCSCCCCEECCTTCCE
T ss_pred             CeEEEeeccCCCCCCCCCccc-CCCCCccEEEeccCCCceEEEEEeCCCCCchhcCeEEEEEEcCCCCceEEEcCCCCCc
Confidence            998888764    54433333 4676 56666665 689999999753                           78899


Q ss_pred             EEEEc-------CCCeEEEEecCCCcee-eEEeccCCceeEEEEEEecCCCeeEEccccceEEEEEcCCCCeEEEeee--
Q 042146          179 ILVGT-------LDNTLRLWNYSTRKIL-KTYSGYTNSKYCISSTFSVTNGKYIVSHRDPVISVASHPAKNIIASGAL--  248 (262)
Q Consensus       179 l~~~~-------~dg~i~i~d~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~--  248 (262)
                      |++++       .++.|.+||+.+++.. ..+.-..-.              -+..+...+..+.|+|+|+.|+++.+  
T Consensus       435 l~v~~~~~~~~~~~~~v~v~d~~~~~~~~~~~~v~~~~--------------~~~~~~~~~~~~~~~~~g~~~~~s~~~~  500 (543)
T 1nir_A          435 LYVDTTFNPDARISQSVAVFDLKNLDAKYQVLPIAEWA--------------DLGEGAKRVVQPEYNKRGDEVWFSVWNG  500 (543)
T ss_dssp             EEECCTTCSSHHHHTCEEEEETTCTTSCCEEECHHHHH--------------CCCSSCCEEEEEEECSSSSEEEEEEECC
T ss_pred             EEEecCCCCCcccCceEEEEECCCCCCCeEEeechhhc--------------ccCCCCCceEeccCCCCCCEEEEEeecC
Confidence            99987       2679999999998876 443210000              00005678999999999999998754  


Q ss_pred             -cCCCcEEEEeecc
Q 042146          249 -DNDRTMKIWTQEK  261 (262)
Q Consensus       249 -d~d~~i~iw~~~~  261 (262)
                       +.|+.|.|||.++
T Consensus       501 ~~~~~~i~v~D~~t  514 (543)
T 1nir_A          501 KNDSSALVVVDDKT  514 (543)
T ss_dssp             TTSCCEEEEEETTT
T ss_pred             CCCCCeEEEEECCC
Confidence             2479999999764

>2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia}

Probab=99.88  E-value=5.3e-21  Score=164.01  Aligned_cols=217  Identities=11%  Similarity=0.085  Sum_probs=153.6

Q ss_pred             cCceEEEEEccCCCeEEEecC-CC-----eEEEeecCCCCCCCCCCC----------------------------CCCcc
Q 042146           23 LRAVSYVKFSHDGRLLTSSSA-EK-----TLLTYSLSSISNFDSTPP----------------------------SPLQK   68 (262)
Q Consensus        23 ~~~v~~~~~~~~~~~l~s~~~-d~-----~i~iw~~~~~~~~~~~~~----------------------------~~~~~   68 (262)
                      ...+.+++|+|||++|++++. |+     .|++||+++.........                            .....
T Consensus        36 ~~~~~~~~~SpdG~~la~~~~~d~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~  115 (741)
T 2ecf_A           36 GPTLMKPKVAPDGSRVTFLRGKDSDRNQLDLWSYDIGSGQTRLLVDSKVVLPGTETLSDEEKARRERQRIAAMTGIVDYQ  115 (741)
T ss_dssp             CCCCEEEEECTTSSEEEEEECCSSCTTEEEEEEEETTTCCEEEEECGGGTC--------------------CCEESCCCE
T ss_pred             CCCCCCceEecCCCEEEEEeccCCCCcccEEEEEECCCCceeEccchhhcccccccccchhhhhhhhhhhccccCcceeE
Confidence            557999999999999999998 88     999999876432111100                            00111


Q ss_pred             ccCCcccc--ccceeEEEEecCCCc--cceecccCCcceEEEEEeCCCCEEEeecCCCeEEEEECCCCeeeeeeecCCCC
Q 042146           69 FTGHEQGI--SDLATIRLWDVPTAT--SLKTLIGHTNYVFCINFNPQSNRIVSDTFNETIRIWDIKTGKCLKVLPAHSDP  144 (262)
Q Consensus        69 ~~~~~~~v--~~~~~i~v~d~~~~~--~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~  144 (262)
                      +......+  .....|++||+.++.  ....+..|...+..++|+|||++|+.++ ++.|++||+.+++.......+...
T Consensus       116 ~SpDg~~l~~~~~~~i~~~d~~~~~~~~~~~l~~~~~~~~~~~~SPDG~~la~~~-~~~i~~~d~~~g~~~~~~~~~~~~  194 (741)
T 2ecf_A          116 WSPDAQRLLFPLGGELYLYDLKQEGKAAVRQLTHGEGFATDAKLSPKGGFVSFIR-GRNLWVIDLASGRQMQLTADGSTT  194 (741)
T ss_dssp             ECTTSSEEEEEETTEEEEEESSSCSTTSCCBCCCSSSCEEEEEECTTSSEEEEEE-TTEEEEEETTTTEEEECCCCCCSS
T ss_pred             ECCCCCEEEEEeCCcEEEEECCCCCcceEEEcccCCcccccccCCCCCCEEEEEe-CCcEEEEecCCCCEEEeccCCccc
Confidence            11111111  111489999998873  4556677888899999999999999887 569999999988766554444332


Q ss_pred             ----------------eeeEEEccCCCEEEEEeCCC---------------------------------eEEEEeCCC--
Q 042146          145 ----------------VTAIDFNRDGTMIVTSSYDG---------------------------------LYRILDAST--  173 (262)
Q Consensus       145 ----------------v~~~~~~~~~~~l~~~~~dg---------------------------------~i~~~d~~~--  173 (262)
                                      +..++|+|||++|++++.|+                                 .|.+||+..  
T Consensus       195 ~~~g~~~~v~~~~~~~~~~~~~SpDg~~l~~~~~d~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~~~~l~~~d~~~~~  274 (741)
T 2ecf_A          195 IGNGIAEFVADEEMDRHTGYWWAPDDSAIAYARIDESPVPVQKRYEVYADRTDVIEQRYPAAGDANVQVKLGVISPAEQA  274 (741)
T ss_dssp             EEESCCCHHHHHHSCCCCSEEECTTSSCEEEEEEECTTSCEEEEEEECSSCEEEEEEECCBTTSCCCEEEEEEECSSTTC
T ss_pred             eeccccceeeeeccccccceEECCCCCEEEEEEEcCCCCceEecCCCCCCcccceEeecCCCCCCCCeeEEEEEECCCCC
Confidence                            47899999999999988765                                 788888765  


Q ss_pred             --------------------CCccEEEEEcC-----CCeEEEEecCCCceeeEEeccCCceeEEEEEEecCCCeeEEccc
Q 042146          174 --------------------PNGKFILVGTL-----DNTLRLWNYSTRKILKTYSGYTNSKYCISSTFSVTNGKYIVSHR  228 (262)
Q Consensus       174 --------------------~~~~~l~~~~~-----dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  228 (262)
                                          |++++|++++.     +..|++||+.+++....+..+...                  .-
T Consensus       275 ~~~~~~~~~~~~~~~~~~~~pDg~~l~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~------------------~~  336 (741)
T 2ecf_A          275 QTQWIDLGKEQDIYLARVNWRDPQHLSFQRQSRDQKKLDLVEVTLASNQQRVLAHETSPT------------------WV  336 (741)
T ss_dssp             CCEEECCCSCSSEEEEEEEEEETTEEEEEEEETTSSEEEEEEEETTTCCEEEEEEEECSS------------------CC
T ss_pred             ceEEecCCCCcceEEEEEEeCCCCEEEEEEecccCCeEEEEEEECCCCceEEEEEcCCCC------------------cC
Confidence                                34566665542     467888999888876666542100                  00


Q ss_pred             cceEEEEEcCCCCeEEEeeecCCCcEEEEeec
Q 042146          229 DPVISVASHPAKNIIASGALDNDRTMKIWTQE  260 (262)
Q Consensus       229 ~~v~~~~~~p~~~~l~~~~~d~d~~i~iw~~~  260 (262)
                      ..+..++|+|+++++++++  .||.++||.++
T Consensus       337 ~~~~~~~~spdg~~~~~~~--~~g~~~l~~~~  366 (741)
T 2ecf_A          337 PLHNSLRFLDDGSILWSSE--RTGFQHLYRID  366 (741)
T ss_dssp             CCCSCCEECTTSCEEEEEC--TTSSCEEEEEC
T ss_pred             CcCCceEECCCCeEEEEec--CCCccEEEEEc
Confidence            1456889999999888888  78988888775

>1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24

Probab=99.88  E-value=3.1e-20  Score=158.86  Aligned_cols=236  Identities=11%  Similarity=0.084  Sum_probs=155.1

Q ss_pred             CCCCceeeec--ccccceecccCcC---ceEEEEEccCCCeEEEecCC---------CeEEEeecCCCCCCCCCC--C--
Q 042146            2 SSDRSLESFR--PYTLTQTLNGHLR---AVSYVKFSHDGRLLTSSSAE---------KTLLTYSLSSISNFDSTP--P--   63 (262)
Q Consensus         2 s~d~~i~~~~--~~~~~~~~~~h~~---~v~~~~~~~~~~~l~s~~~d---------~~i~iw~~~~~~~~~~~~--~--   63 (262)
                      +.|++++.|+  ..+....+..|..   .|.+++|||||++|++++.+         +.+.+||+++........  .  
T Consensus        34 ~~dg~i~~~d~~~g~~~~~~~~~~~~~~~v~~~~~SpDg~~l~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~l~~~~~~~  113 (723)
T 1xfd_A           34 EQKGTVRLWNVETNTSTVLIEGKKIESLRAIRYEISPDREYALFSYNVEPIYQHSYTGYYVLSKIPHGDPQSLDPPEVSN  113 (723)
T ss_dssp             CSSSCEEEBCGGGCCCEEEECTTTTTTTTCSEEEECTTSSEEEEEESCCCCSSSCCCSEEEEEESSSCCCEECCCTTCCS
T ss_pred             eCCCCEEEEECCCCcEEEEeccccccccccceEEECCCCCEEEEEecCccceeecceeeEEEEECCCCceEeccCCcccc
Confidence            3578888886  4455666666665   49999999999999998764         788899998754311111  1  


Q ss_pred             --CCCccccCCccccc--cceeEEEEecCCCccceecccCCcce------------------EEEEEeCCCCEEEeecCC
Q 042146           64 --SPLQKFTGHEQGIS--DLATIRLWDVPTATSLKTLIGHTNYV------------------FCINFNPQSNRIVSDTFN  121 (262)
Q Consensus        64 --~~~~~~~~~~~~v~--~~~~i~v~d~~~~~~~~~~~~~~~~v------------------~~~~~~~~~~~l~~~~~d  121 (262)
                        .....+......+.  ....|++||+.+++.......+...+                  .+++|+|||++|++++.+
T Consensus       114 ~~~~~~~~SPdG~~la~~~~~~i~~~~~~~g~~~~~~~~~~~~~~~~g~~~~v~~ee~~~~~~~~~~SpDg~~la~~~~~  193 (723)
T 1xfd_A          114 AKLQYAGWGPKGQQLIFIFENNIYYCAHVGKQAIRVVSTGKEGVIYNGLSDWLYEEEILKTHIAHWWSPDGTRLAYAAIN  193 (723)
T ss_dssp             CCCSBCCBCSSTTCEEEEETTEEEEESSSSSCCEEEECCCBTTTEEEEECCHHHHHTTSSSSEEEEECTTSSEEEEEEEE
T ss_pred             ccccccEECCCCCEEEEEECCeEEEEECCCCceEEEecCCCCCceECcccceeEEEEeccCcceEEECCCCCEEEEEEEC
Confidence              01112222222222  12389999999887765554443333                  789999999999987754


Q ss_pred             C----------------------------------eEEEEECCCCeeeeeeecC------CCCeeeEEEccCCCEEEEEe
Q 042146          122 E----------------------------------TIRIWDIKTGKCLKVLPAH------SDPVTAIDFNRDGTMIVTSS  161 (262)
Q Consensus       122 g----------------------------------~i~vwd~~~~~~~~~~~~~------~~~v~~~~~~~~~~~l~~~~  161 (262)
                      +                                  .|++||+.+++....+..+      ...+..++|+|||+++++..
T Consensus       194 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~l~~~d~~~~~~~~~l~~~~~~~~~~~~~~~~~~SpDg~~l~~~~  273 (723)
T 1xfd_A          194 DSRVPIMELPTYTGSIYPTVKPYHYPKAGSENPSISLHVIGLNGPTHDLEMMPPDDPRMREYYITMVKWATSTKVAVTWL  273 (723)
T ss_dssp             CTTSCEEEECCCSSSSSCCCEEEECCBTTSCCCEEEEEEEESSSSCCCEECCCCCCGGGSSEEEEEEEESSSSEEEEEEE
T ss_pred             CCccceEEeeccCCcCCCcceeccCCCCCCCCCeeEEEEEECCCCceeEEeeCCccCCCccceeEEEEEeCCCeEEEEEE
Confidence            3                                  7999999988765555543      56789999999999887765


Q ss_pred             C----CCeEEEEeCCC-------------------------CCccEEEE--EcCCC------eEEEEe-cCCCce--eeE
Q 042146          162 Y----DGLYRILDAST-------------------------PNGKFILV--GTLDN------TLRLWN-YSTRKI--LKT  201 (262)
Q Consensus       162 ~----dg~i~~~d~~~-------------------------~~~~~l~~--~~~dg------~i~i~d-~~~~~~--~~~  201 (262)
                      .    +..|.+||+.+                         |+++.|+.  +..++      .|++|| ...++.  ...
T Consensus       274 ~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~  353 (723)
T 1xfd_A          274 NRAQNVSILTLCDATTGVCTKKHEDESEAWLHRQNEEPVFSKDGRKFFFIRAIPQGGRGKFYHITVSSSQPNSSNDNIQS  353 (723)
T ss_dssp             ETTSCEEEEEEEETTTCCEEEEEEEECSSCCCCCCCCCEECTTSCSEEEEEEECCSSSSCEEEEEEECSSCCSSSCCCCB
T ss_pred             cCCCCeEEEEEEeCCCCcceEEEEeccCCEEeccCCCceEcCCCCeEEEEEecccCCCcceeEEEEEeccCCCCccceeE
Confidence            3    35788898654                         45554543  33455      455566 233330  233


Q ss_pred             EeccCCceeEEEEEEecCCCeeEEccccceEE-EEEcCCCCeEEEeeecCC--CcEEEEeec
Q 042146          202 YSGYTNSKYCISSTFSVTNGKYIVSHRDPVIS-VASHPAKNIIASGALDND--RTMKIWTQE  260 (262)
Q Consensus       202 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~-~~~~p~~~~l~~~~~d~d--~~i~iw~~~  260 (262)
                      +..                      +...+.. ++|+|+++.|+..+. .+  +.++||+++
T Consensus       354 l~~----------------------~~~~~~~~~~~spdg~~l~~~~~-~~~~~~~~l~~~~  392 (723)
T 1xfd_A          354 ITS----------------------GDWDVTKILAYDEKGNKIYFLST-EDLPRRRQLYSAN  392 (723)
T ss_dssp             SCC----------------------SSSCEEEEEEEETTTTEEEEEES-SSCTTCCEEEEEC
T ss_pred             eec----------------------CCeEEEeeeEEcCCCCEEEEEEc-CCCCcceEEEEEe
Confidence            321                      2233444 699999999987762 24  789999985

>1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B*

Probab=99.88  E-value=5.6e-21  Score=148.64  Aligned_cols=228  Identities=11%  Similarity=0.108  Sum_probs=159.7

Q ss_pred             CCCceeeecc--cccceecccCc-C-ceEEEEEccCCCeE-EEecCCCeEEEeecCCCCCCCCCC---------CCCCcc
Q 042146            3 SDRSLESFRP--YTLTQTLNGHL-R-AVSYVKFSHDGRLL-TSSSAEKTLLTYSLSSISNFDSTP---------PSPLQK   68 (262)
Q Consensus         3 ~d~~i~~~~~--~~~~~~~~~h~-~-~v~~~~~~~~~~~l-~s~~~d~~i~iw~~~~~~~~~~~~---------~~~~~~   68 (262)
                      .|++|..|+.  .+.+..+.... . .+..++|+|+++++ ++++.++.|.+||+.+........         ......
T Consensus         9 ~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~   88 (337)
T 1pby_B            9 RPDKLVVIDTEKMAVDKVITIADAGPTPMVPMVAPGGRIAYATVNKSESLVKIDLVTGETLGRIDLSTPEERVKSLFGAA   88 (337)
T ss_dssp             TTTEEEEEETTTTEEEEEEECTTCTTCCCCEEECTTSSEEEEEETTTTEEEEEETTTCCEEEEEECCBTTEEEECTTCEE
T ss_pred             CCCeEEEEECCCCcEEEEEEcCCCCCCccceEEcCCCCEEEEEeCCCCeEEEEECCCCCeEeeEEcCCcccccccccceE
Confidence            5778888864  45555555322 1 57899999999765 566678999999987643321111         001111


Q ss_pred             ccCCccccc---------------cceeEEEEecCCCccceecccCCcceEEEEEeCCCCEEEeecCCCeEEEEECCCCe
Q 042146           69 FTGHEQGIS---------------DLATIRLWDVPTATSLKTLIGHTNYVFCINFNPQSNRIVSDTFNETIRIWDIKTGK  133 (262)
Q Consensus        69 ~~~~~~~v~---------------~~~~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~  133 (262)
                      +......+.               ....|.+||+.+++.+..+.. ...+.+++|+|++++++++  ++.|.+||+.+++
T Consensus        89 ~s~dg~~l~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~-~~~~~~~~~s~dg~~l~~~--~~~i~~~d~~~~~  165 (337)
T 1pby_B           89 LSPDGKTLAIYESPVRLELTHFEVQPTRVALYDAETLSRRKAFEA-PRQITMLAWARDGSKLYGL--GRDLHVMDPEAGT  165 (337)
T ss_dssp             ECTTSSEEEEEEEEEEECSSCEEECCCEEEEEETTTTEEEEEEEC-CSSCCCEEECTTSSCEEEE--SSSEEEEETTTTE
T ss_pred             ECCCCCEEEEEecccccccccccccCceEEEEECCCCcEEEEEeC-CCCcceeEECCCCCEEEEe--CCeEEEEECCCCc
Confidence            211111121               125899999988877766654 4557889999999988887  6889999999998


Q ss_pred             eeeeeecCCCCeeeEEEccCCCEEEEEeCC-C-----------------------eEEEEeCCC----------------
Q 042146          134 CLKVLPAHSDPVTAIDFNRDGTMIVTSSYD-G-----------------------LYRILDAST----------------  173 (262)
Q Consensus       134 ~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d-g-----------------------~i~~~d~~~----------------  173 (262)
                      .+..+..+.. ...+.|+|++..++..+.. +                       .|.+||+.+                
T Consensus       166 ~~~~~~~~~~-~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~  244 (337)
T 1pby_B          166 LVEDKPIQSW-EAETYAQPDVLAVWNQHESSGVMATPFYTARKDIDPADPTAYRTGLLTMDLETGEMAMREVRIMDVFYF  244 (337)
T ss_dssp             EEEEECSTTT-TTTTBCCCBCCCCCCCCTTTTEEEEEEEEEBTTSCTTSGGGEEEEEEEEETTTCCEEEEEEEECSSCEE
T ss_pred             Eeeeeecccc-CCCceeCCCccEEeeeccCCCceeeeeeccccccccccccccccceEEEeCCCCCceEeecCCCCCcee
Confidence            8777754431 1233789998866555433 2                       357888653                


Q ss_pred             -----CCccEEEEEcCCCeEEEEecCCCceeeEEeccCCceeEEEEEEecCCCeeEEccccceEEEEEcCCCCeEEEeee
Q 042146          174 -----PNGKFILVGTLDNTLRLWNYSTRKILKTYSGYTNSKYCISSTFSVTNGKYIVSHRDPVISVASHPAKNIIASGAL  248 (262)
Q Consensus       174 -----~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~  248 (262)
                           +++++++++  ++.|++||+.+++.+..+..                       ...+.+++|+|++++|++++ 
T Consensus       245 ~~~~s~dg~~l~~~--~~~v~~~d~~~~~~~~~~~~-----------------------~~~~~~~~~s~dg~~l~~~~-  298 (337)
T 1pby_B          245 STAVNPAKTRAFGA--YNVLESFDLEKNASIKRVPL-----------------------PHSYYSVNVSTDGSTVWLGG-  298 (337)
T ss_dssp             EEEECTTSSEEEEE--ESEEEEEETTTTEEEEEEEC-----------------------SSCCCEEEECTTSCEEEEES-
T ss_pred             eEEECCCCCEEEEe--CCeEEEEECCCCcCcceecC-----------------------CCceeeEEECCCCCEEEEEc-
Confidence                 678888887  68999999999888877763                       34567899999999999887 


Q ss_pred             cCCCcEEEEeecc
Q 042146          249 DNDRTMKIWTQEK  261 (262)
Q Consensus       249 d~d~~i~iw~~~~  261 (262)
                       .++.|++|++..
T Consensus       299 -~~~~i~v~d~~~  310 (337)
T 1pby_B          299 -ALGDLAAYDAET  310 (337)
T ss_dssp             -BSSEEEEEETTT
T ss_pred             -CCCcEEEEECcC
Confidence             789999999864

>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*

Probab=99.87  E-value=4.5e-20  Score=144.53  Aligned_cols=220  Identities=9%  Similarity=0.049  Sum_probs=160.5

Q ss_pred             CCceeeec--ccccceecccCcCceEEEEEccCCCeE-EEecCCCeEEEeecCCCCCCCCCCC---C------C--C--c
Q 042146            4 DRSLESFR--PYTLTQTLNGHLRAVSYVKFSHDGRLL-TSSSAEKTLLTYSLSSISNFDSTPP---S------P--L--Q   67 (262)
Q Consensus         4 d~~i~~~~--~~~~~~~~~~h~~~v~~~~~~~~~~~l-~s~~~d~~i~iw~~~~~~~~~~~~~---~------~--~--~   67 (262)
                      +++|..|+  ..+....+.. ...+..++|+|+++++ ++...++.|.+||..+.+.......   .      +  .  .
T Consensus        68 ~~~v~~~d~~~~~~~~~~~~-~~~~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  146 (353)
T 3vgz_A           68 GGVVYRLDPVTLEVTQAIHN-DLKPFGATINNTTQTLWFGNTVNSAVTAIDAKTGEVKGRLVLDDRKRTEEVRPLQPREL  146 (353)
T ss_dssp             SEEEEEECTTTCCEEEEEEE-SSCCCSEEEETTTTEEEEEETTTTEEEEEETTTCCEEEEEESCCCCCCSSCCCCEEEEE
T ss_pred             CccEEEEcCCCCeEEEEEec-CCCcceEEECCCCCEEEEEecCCCEEEEEeCCCCeeEEEEecCCCccccccCCCCCceE
Confidence            56777776  3455555553 3457889999999955 5556689999999876432111100   0      0  0  1


Q ss_pred             cccCCcccc--cc---ceeEEEEecCCCccceecccCCcceEEEEEeCCCCEEEeecCCCeEEEEECCCCeeeeeeec--
Q 042146           68 KFTGHEQGI--SD---LATIRLWDVPTATSLKTLIGHTNYVFCINFNPQSNRIVSDTFNETIRIWDIKTGKCLKVLPA--  140 (262)
Q Consensus        68 ~~~~~~~~v--~~---~~~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~--  140 (262)
                      .+......+  ..   ...|.+||..+++.+..+..+...+.+++|+|+++++++++.++.|.+||+.+++.+..+..  
T Consensus       147 ~~s~dg~~l~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~  226 (353)
T 3vgz_A          147 VADDATNTVYISGIGKESVIWVVDGGNIKLKTAIQNTGKMSTGLALDSEGKRLYTTNADGELITIDTADNKILSRKKLLD  226 (353)
T ss_dssp             EEETTTTEEEEEEESSSCEEEEEETTTTEEEEEECCCCTTCCCCEEETTTTEEEEECTTSEEEEEETTTTEEEEEEECCC
T ss_pred             EECCCCCEEEEEecCCCceEEEEcCCCCceEEEecCCCCccceEEECCCCCEEEEEcCCCeEEEEECCCCeEEEEEEcCC
Confidence            111111111  11   23699999999988887775666688999999999999999999999999999988877754  


Q ss_pred             --CCCCeeeEEEccCCCEEEEEeC-CCeEEEEeCCC------------------CCccEEEEEc-CCCeEEEEecCCCce
Q 042146          141 --HSDPVTAIDFNRDGTMIVTSSY-DGLYRILDAST------------------PNGKFILVGT-LDNTLRLWNYSTRKI  198 (262)
Q Consensus       141 --~~~~v~~~~~~~~~~~l~~~~~-dg~i~~~d~~~------------------~~~~~l~~~~-~dg~i~i~d~~~~~~  198 (262)
                        +...+..++|+|+++.+++++. ++.|.+||..+                  ++++++++++ .++.|.+||..+++.
T Consensus       227 ~~~~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~  306 (353)
T 3vgz_A          227 DGKEHFFINISLDTARQRAFITDSKAAEVLVVDTRNGNILAKVAAPESLAVLFNPARNEAYVTHRQAGKVSVIDAKSYKV  306 (353)
T ss_dssp             SSSCCCEEEEEEETTTTEEEEEESSSSEEEEEETTTCCEEEEEECSSCCCEEEETTTTEEEEEETTTTEEEEEETTTTEE
T ss_pred             CCCCcccceEEECCCCCEEEEEeCCCCEEEEEECCCCcEEEEEEcCCCceEEECCCCCEEEEEECCCCeEEEEECCCCeE
Confidence              4556788999999997776664 59999999876                  6787555554 789999999999998


Q ss_pred             eeEEeccCCceeEEEEEEecCCCeeEEccccceEEEEEcCCCCeEEEee
Q 042146          199 LKTYSGYTNSKYCISSTFSVTNGKYIVSHRDPVISVASHPAKNIIASGA  247 (262)
Q Consensus       199 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~  247 (262)
                      +..+.                       ....+.+++|+|++++|+.+.
T Consensus       307 ~~~~~-----------------------~~~~~~~~~~s~dg~~l~v~~  332 (353)
T 3vgz_A          307 VKTFD-----------------------TPTHPNSLALSADGKTLYVSV  332 (353)
T ss_dssp             EEEEE-----------------------CCSEEEEEEECTTSCEEEEEE
T ss_pred             EEEEe-----------------------cCCCCCeEEEcCCCCEEEEEE
Confidence            88776                       334678999999999777766

>2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A

Probab=99.87  E-value=2.1e-20  Score=150.44  Aligned_cols=127  Identities=13%  Similarity=0.128  Sum_probs=103.5

Q ss_pred             CcCceEEEEEccCCCeEE----EecCCCeEEEeecCCCCCCCCCCCCCCccccCCccccccceeEEEEecCCCccceecc
Q 042146           22 HLRAVSYVKFSHDGRLLT----SSSAEKTLLTYSLSSISNFDSTPPSPLQKFTGHEQGISDLATIRLWDVPTATSLKTLI   97 (262)
Q Consensus        22 h~~~v~~~~~~~~~~~l~----s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~i~v~d~~~~~~~~~~~   97 (262)
                      |...|.+++|+|++++|+    +|+.|+.|++||+...........                        +.......+.
T Consensus        91 ~~~~v~~l~~spdg~~lav~~~sgs~d~~v~iwd~~~~~~~~~~~~------------------------~~~~~~~~~~  146 (434)
T 2oit_A           91 MKFPIHHLALSCDNLTLSACMMSSEYGSIIAFFDVRTFSNEAKQQK------------------------RPFAYHKLLK  146 (434)
T ss_dssp             CSSCEEEEEECTTSCEEEEEEEETTTEEEEEEEEHHHHHCTTCSSC------------------------CCSEEEECCC
T ss_pred             CCCcccEEEEcCCCCEEEEEEeccCCCceEEEEEccccccCCcCCc------------------------ceeeeeeccC
Confidence            567899999999999999    889999999998754210000000                        0001234456


Q ss_pred             cCCcceEEEEEeCC-CCEEEeecCCCeEEEEECCCCeeeeeeecCCCCeeeEEEccCCCEEEEEeCCCeEEEEeCC
Q 042146           98 GHTNYVFCINFNPQ-SNRIVSDTFNETIRIWDIKTGKCLKVLPAHSDPVTAIDFNRDGTMIVTSSYDGLYRILDAS  172 (262)
Q Consensus        98 ~~~~~v~~~~~~~~-~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~d~~  172 (262)
                      +|...|.+++|+|+ +.+|++++.||+|++||++++..+.....|...|.+++|+|+|++|++|+.||.|++||++
T Consensus       147 ~h~~~V~~v~~~p~~~~~las~s~Dg~v~iwD~~~~~~~~~~~~~~~~v~~v~wspdg~~lasgs~dg~v~iwd~~  222 (434)
T 2oit_A          147 DAGGMVIDMKWNPTVPSMVAVCLADGSIAVLQVTETVKVCATLPSTVAVTSVCWSPKGKQLAVGKQNGTVVQYLPT  222 (434)
T ss_dssp             SGGGSEEEEEECSSCTTEEEEEETTSCEEEEEESSSEEEEEEECGGGCEEEEEECTTSSCEEEEETTSCEEEECTT
T ss_pred             CCCCceEEEEECCCCCCEEEEEECCCeEEEEEcCCCcceeeccCCCCceeEEEEcCCCCEEEEEcCCCcEEEEccC
Confidence            78999999999997 8899999999999999999987776677788999999999999999999999999999987

>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*

Probab=99.87  E-value=1.8e-19  Score=141.14  Aligned_cols=215  Identities=10%  Similarity=0.064  Sum_probs=157.3

Q ss_pred             CcCceEEEEEccCCCeEEEecC-------CCeEEEeecCCCCCCCCCC---CCCCccccCCccccc----cceeEEEEec
Q 042146           22 HLRAVSYVKFSHDGRLLTSSSA-------EKTLLTYSLSSISNFDSTP---PSPLQKFTGHEQGIS----DLATIRLWDV   87 (262)
Q Consensus        22 h~~~v~~~~~~~~~~~l~s~~~-------d~~i~iw~~~~~~~~~~~~---~~~~~~~~~~~~~v~----~~~~i~v~d~   87 (262)
                      ....+..++|+|+++++++++.       ++.|.+||..+.+......   ......+......+.    ....|.+||.
T Consensus        39 ~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~v~~~~~~~v~~~d~  118 (353)
T 3vgz_A           39 VGKGAYEMAYSQQENALWLATSQSRKLDKGGVVYRLDPVTLEVTQAIHNDLKPFGATINNTTQTLWFGNTVNSAVTAIDA  118 (353)
T ss_dssp             EESSEEEEEEETTTTEEEEEECCCTTTEESEEEEEECTTTCCEEEEEEESSCCCSEEEETTTTEEEEEETTTTEEEEEET
T ss_pred             hccCccceEECCCCCEEEEEcCCCcCCCCCccEEEEcCCCCeEEEEEecCCCcceEEECCCCCEEEEEecCCCEEEEEeC
Confidence            3456889999999998888774       5689999987643221110   001111111111111    1238999999


Q ss_pred             CCCccceecccCCc---------ceEEEEEeCCCCEEEeec--CCCeEEEEECCCCeeeeeeecCCCCeeeEEEccCCCE
Q 042146           88 PTATSLKTLIGHTN---------YVFCINFNPQSNRIVSDT--FNETIRIWDIKTGKCLKVLPAHSDPVTAIDFNRDGTM  156 (262)
Q Consensus        88 ~~~~~~~~~~~~~~---------~v~~~~~~~~~~~l~~~~--~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~  156 (262)
                      .+++.+..+..+..         .+.+++|+|+++++++++  .++.|.+||+++++.+..+..+...+.+++|+|+++.
T Consensus       119 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~s~dg~~  198 (353)
T 3vgz_A          119 KTGEVKGRLVLDDRKRTEEVRPLQPRELVADDATNTVYISGIGKESVIWVVDGGNIKLKTAIQNTGKMSTGLALDSEGKR  198 (353)
T ss_dssp             TTCCEEEEEESCCCCCCSSCCCCEEEEEEEETTTTEEEEEEESSSCEEEEEETTTTEEEEEECCCCTTCCCCEEETTTTE
T ss_pred             CCCeeEEEEecCCCccccccCCCCCceEEECCCCCEEEEEecCCCceEEEEcCCCCceEEEecCCCCccceEEECCCCCE
Confidence            99988777655432         278899999999877665  5789999999999988888756666899999999999


Q ss_pred             EEEEeCCCeEEEEeCCC------------------------CCccEEEEEc-CCCeEEEEecCCCceeeEEeccCCceeE
Q 042146          157 IVTSSYDGLYRILDAST------------------------PNGKFILVGT-LDNTLRLWNYSTRKILKTYSGYTNSKYC  211 (262)
Q Consensus       157 l~~~~~dg~i~~~d~~~------------------------~~~~~l~~~~-~dg~i~i~d~~~~~~~~~~~~~~~~~~~  211 (262)
                      +++++.++.|.+||+.+                        ++++++++++ .++.|.+||+.+++.+..+..       
T Consensus       199 l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~-------  271 (353)
T 3vgz_A          199 LYTTNADGELITIDTADNKILSRKKLLDDGKEHFFINISLDTARQRAFITDSKAAEVLVVDTRNGNILAKVAA-------  271 (353)
T ss_dssp             EEEECTTSEEEEEETTTTEEEEEEECCCSSSCCCEEEEEEETTTTEEEEEESSSSEEEEEETTTCCEEEEEEC-------
T ss_pred             EEEEcCCCeEEEEECCCCeEEEEEEcCCCCCCcccceEEECCCCCEEEEEeCCCCEEEEEECCCCcEEEEEEc-------
Confidence            99999999999999865                        5677666655 458999999999998887764       


Q ss_pred             EEEEEecCCCeeEEccccceEEEEEcCCCCeEEEeeecCCCcEEEEeecc
Q 042146          212 ISSTFSVTNGKYIVSHRDPVISVASHPAKNIIASGALDNDRTMKIWTQEK  261 (262)
Q Consensus       212 ~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~d~d~~i~iw~~~~  261 (262)
                                     ..  ...++|+|+++.+++++. .++.|.+||+..
T Consensus       272 ---------------~~--~~~~~~s~dg~~l~v~~~-~~~~v~~~d~~~  303 (353)
T 3vgz_A          272 ---------------PE--SLAVLFNPARNEAYVTHR-QAGKVSVIDAKS  303 (353)
T ss_dssp             ---------------SS--CCCEEEETTTTEEEEEET-TTTEEEEEETTT
T ss_pred             ---------------CC--CceEEECCCCCEEEEEEC-CCCeEEEEECCC
Confidence                           11  146899999996665552 589999999863

>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A

Probab=99.87  E-value=2.8e-19  Score=140.75  Aligned_cols=215  Identities=12%  Similarity=0.212  Sum_probs=141.6

Q ss_pred             CcCceEEEEEccCCCeEEEecCC----CeEEEeecCCC--CC--CCCC--CCCCCccccCCccccc----cceeEEEEec
Q 042146           22 HLRAVSYVKFSHDGRLLTSSSAE----KTLLTYSLSSI--SN--FDST--PPSPLQKFTGHEQGIS----DLATIRLWDV   87 (262)
Q Consensus        22 h~~~v~~~~~~~~~~~l~s~~~d----~~i~iw~~~~~--~~--~~~~--~~~~~~~~~~~~~~v~----~~~~i~v~d~   87 (262)
                      +...+..++|+|++++|++++.+    +.|.+|+++..  ..  ....  .......+......+.    ....+.+|++
T Consensus        48 ~~~~p~~l~~spdg~~l~~~~~~~~~~~~v~~~~~~~~~g~~~~~~~~~~~~~~p~~~~~dg~~l~~~~~~~~~v~~~~~  127 (361)
T 3scy_A           48 EVANPSYLIPSADGKFVYSVNEFSKDQAAVSAFAFDKEKGTLHLLNTQKTMGADPCYLTTNGKNIVTANYSGGSITVFPI  127 (361)
T ss_dssp             ECSCCCSEEECTTSSEEEEEECCSSTTCEEEEEEEETTTTEEEEEEEEECSSSCEEEEEECSSEEEEEETTTTEEEEEEB
T ss_pred             cCCCCceEEECCCCCEEEEEEccCCCCCcEEEEEEeCCCCcEEEeeEeccCCCCcEEEEECCCEEEEEECCCCEEEEEEe
Confidence            67778889999999999998876    79999988652  10  0000  0000000110111111    1237999999


Q ss_pred             CCCccceecc--------------cCCcceEEEEEeCCCCEEEe-ecCCCeEEEEECCCCee------e-------eeee
Q 042146           88 PTATSLKTLI--------------GHTNYVFCINFNPQSNRIVS-DTFNETIRIWDIKTGKC------L-------KVLP  139 (262)
Q Consensus        88 ~~~~~~~~~~--------------~~~~~v~~~~~~~~~~~l~~-~~~dg~i~vwd~~~~~~------~-------~~~~  139 (262)
                      .....+..+.              .+...+.+++|+|+++++++ ...++.|.+|++.....      +       ....
T Consensus       128 ~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~v~v~~~~~~~~~~~~~~l~~~~~~~~~~~  207 (361)
T 3scy_A          128 GQDGALLPASDVIEFKGSGPDKERQTMPHLHCVRITPDGKYLLADDLGTDQIHKFNINPNANADNKEKFLTKGTPEAFKV  207 (361)
T ss_dssp             CTTSCBCSCSEEEECCCCCSCTTTCSSCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTCCTTTCCCCEEEEEEEEEEC
T ss_pred             CCCCcCcccceeEEccCCCCCccccCCCcceEEEECCCCCEEEEEeCCCCEEEEEEEcCCCCcccccceeecccccceec
Confidence            7544332221              11234688999999996655 44588999998874331      1       1122


Q ss_pred             cCCCCeeeEEEccCCCEEEEEe-CCCeEEEEeCCC-------------------------CCccEEEEEcC--CCeEEEE
Q 042146          140 AHSDPVTAIDFNRDGTMIVTSS-YDGLYRILDAST-------------------------PNGKFILVGTL--DNTLRLW  191 (262)
Q Consensus       140 ~~~~~v~~~~~~~~~~~l~~~~-~dg~i~~~d~~~-------------------------~~~~~l~~~~~--dg~i~i~  191 (262)
                      .+......++|+|+|+++++++ .++.|.+|++..                         |++++|+++..  ++.|.+|
T Consensus       208 ~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~~~~~g~~~~~~~~~~~~~~~~~~~~i~~spdg~~l~v~~~~~~~~i~v~  287 (361)
T 3scy_A          208 APGSGPRHLIFNSDGKFAYLINEIGGTVIAFRYADGMLDEIQTVAADTVNAQGSGDIHLSPDGKYLYASNRLKADGVAIF  287 (361)
T ss_dssp             CTTCCEEEEEECTTSSEEEEEETTTCEEEEEEEETTEEEEEEEEESCSSCCCCEEEEEECTTSSEEEEEECSSSCEEEEE
T ss_pred             CCCCCCeEEEEcCCCCEEEEEcCCCCeEEEEEecCCceEEeEEEecCCCCCCCcccEEECCCCCEEEEECCCCCCEEEEE
Confidence            3445678999999999887777 689999999753                         78888877665  4899999


Q ss_pred             ecC--CCce--eeEEeccCCceeEEEEEEecCCCeeEEccccceEEEEEcCCCCeEEEeeecCCCcEEEEeec
Q 042146          192 NYS--TRKI--LKTYSGYTNSKYCISSTFSVTNGKYIVSHRDPVISVASHPAKNIIASGALDNDRTMKIWTQE  260 (262)
Q Consensus       192 d~~--~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~d~d~~i~iw~~~  260 (262)
                      ++.  +++.  +..+.                       ....+..++|+|++++|++++. .++.|.+|+++
T Consensus       288 ~~~~~~g~~~~~~~~~-----------------------~g~~~~~~~~spdg~~l~~~~~-~~~~v~v~~~d  336 (361)
T 3scy_A          288 KVDETNGTLTKVGYQL-----------------------TGIHPRNFIITPNGKYLLVACR-DTNVIQIFERD  336 (361)
T ss_dssp             EECTTTCCEEEEEEEE-----------------------CSSCCCEEEECTTSCEEEEEET-TTTEEEEEEEC
T ss_pred             EEcCCCCcEEEeeEec-----------------------CCCCCceEEECCCCCEEEEEEC-CCCCEEEEEEE
Confidence            985  3442  22222                       2235678999999998888874 37899998775

>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum}

Probab=99.86  E-value=3.5e-19  Score=139.41  Aligned_cols=211  Identities=12%  Similarity=0.167  Sum_probs=141.0

Q ss_pred             CCceeeecc----cccceecccCcCceEEEEEccCCCeEEEec-CCCeEEEeecCCCCCCCCCCCCCCccccCCcccccc
Q 042146            4 DRSLESFRP----YTLTQTLNGHLRAVSYVKFSHDGRLLTSSS-AEKTLLTYSLSSISNFDSTPPSPLQKFTGHEQGISD   78 (262)
Q Consensus         4 d~~i~~~~~----~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~-~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~   78 (262)
                      ++.|..|+.    .+.+..+..+...+..++|+|++++|++++ .++.|.+|++......                    
T Consensus        62 ~~~v~~~~~~~g~~~~~~~~~~~~~~p~~~a~spdg~~l~~~~~~~~~v~v~~~~~~g~~--------------------  121 (347)
T 3hfq_A           62 EGGIAAWQIDGQTAHKLNTVVAPGTPPAYVAVDEARQLVYSANYHKGTAEVMKIAADGAL--------------------  121 (347)
T ss_dssp             EEEEEEEEEETTEEEEEEEEEEESCCCSEEEEETTTTEEEEEETTTTEEEEEEECTTSCE--------------------
T ss_pred             CceEEEEEecCCcEEEeeeeecCCCCCEEEEECCCCCEEEEEeCCCCEEEEEEeCCCCCe--------------------
Confidence            456666652    223444455778889999999999888887 7899999987531000                    


Q ss_pred             ceeEEEEecCCCccceecccCCcceEEEEEeCCCCEEEeecCCCeEEEEECC-CCeee--eeeecC-CCCeeeEEEccCC
Q 042146           79 LATIRLWDVPTATSLKTLIGHTNYVFCINFNPQSNRIVSDTFNETIRIWDIK-TGKCL--KVLPAH-SDPVTAIDFNRDG  154 (262)
Q Consensus        79 ~~~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~-~~~~~--~~~~~~-~~~v~~~~~~~~~  154 (262)
                       ..+.........+.  ...+...+.+++|+|+++++++...++.|.+|++. +++..  ..+..+ ......++|+|+|
T Consensus       122 -~~~~~~~~~~~~p~--~~~~~~~~~~~~~spdg~l~v~~~~~~~v~~~~~~~~g~~~~~~~~~~~~g~~p~~~~~spdg  198 (347)
T 3hfq_A          122 -TLTDTVQHSGHGPR--PEQDGSHIHYTDLTPDNRLAVIDLGSDKVYVYNVSDAGQLSEQSVLTMEAGFGPRHLVFSPDG  198 (347)
T ss_dssp             -EEEEEEECCCCCSS--TTCSSCCEEEEEECTTSCEEEEETTTTEEEEEEECTTSCEEEEEEEECCTTCCEEEEEECTTS
T ss_pred             -eecceeecCCCCCC--ccccCCCceEEEECCCCcEEEEeCCCCEEEEEEECCCCcEEEeeeEEcCCCCCCceEEECCCC
Confidence             00111111000000  11234568899999999977777778999999998 45432  222222 3367889999999


Q ss_pred             CEEEE-EeCCCeEEEEeCCC------------------------------CCccEEE-EEcCCCeEEEEecCCC---cee
Q 042146          155 TMIVT-SSYDGLYRILDAST------------------------------PNGKFIL-VGTLDNTLRLWNYSTR---KIL  199 (262)
Q Consensus       155 ~~l~~-~~~dg~i~~~d~~~------------------------------~~~~~l~-~~~~dg~i~i~d~~~~---~~~  199 (262)
                      +++++ +..++.+.+|++..                              |++++|+ +...++.|.+|++...   +.+
T Consensus       199 ~~l~v~~~~~~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~spdG~~l~v~~~~~~~v~v~~~~~~g~~~~~  278 (347)
T 3hfq_A          199 QYAFLAGELSSQIASLKYDTQTGAFTQLGIVKTIPADYTAHNGAAAIRLSHDGHFLYVSNRGYNTLAVFAVTADGHLTLI  278 (347)
T ss_dssp             SEEEEEETTTTEEEEEEEETTTTEEEEEEEEESSCTTCCSCCEEEEEEECTTSCEEEEEEETTTEEEEEEECGGGCEEEE
T ss_pred             CEEEEEeCCCCEEEEEEecCCCCceEEeeeeeecCCCCCCCCcceeEEECCCCCEEEEEeCCCCEEEEEEECCCCcEEEe
Confidence            96655 55788999998652                              6788774 5556899999998732   333


Q ss_pred             eEEeccCCceeEEEEEEecCCCeeEEccccceEEEEEcCCCCeEEEeeecCCCcEEEEeec
Q 042146          200 KTYSGYTNSKYCISSTFSVTNGKYIVSHRDPVISVASHPAKNIIASGALDNDRTMKIWTQE  260 (262)
Q Consensus       200 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~d~d~~i~iw~~~  260 (262)
                      ..+..                      +...+..++|+|++++|++++. .++.|.+|+++
T Consensus       279 ~~~~~----------------------~~~~~~~~~~spdg~~l~v~~~-~~~~v~v~~~d  316 (347)
T 3hfq_A          279 QQIST----------------------EGDFPRDFDLDPTEAFVVVVNQ-NTDNATLYARD  316 (347)
T ss_dssp             EEEEC----------------------SSSCCCEEEECTTSSEEEEEET-TTTEEEEEEEC
T ss_pred             EEEec----------------------CCCCcCeEEECCCCCEEEEEEc-CCCcEEEEEEe
Confidence            33332                      4556789999999999888873 35899999765

>2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia}

Probab=99.85  E-value=1.2e-19  Score=155.61  Aligned_cols=210  Identities=10%  Similarity=0.058  Sum_probs=146.5

Q ss_pred             ceEEEEEccCCCeEEEecCCCeEEEeecCCC---CCCCCCCC-CCC--ccccCCccccc--cceeEEEEecCCCccceec
Q 042146           25 AVSYVKFSHDGRLLTSSSAEKTLLTYSLSSI---SNFDSTPP-SPL--QKFTGHEQGIS--DLATIRLWDVPTATSLKTL   96 (262)
Q Consensus        25 ~v~~~~~~~~~~~l~s~~~d~~i~iw~~~~~---~~~~~~~~-~~~--~~~~~~~~~v~--~~~~i~v~d~~~~~~~~~~   96 (262)
                      .|.+++|||||++|++++. +.|++||+.+.   ........ ...  ..+......+.  ....|++||+.+++.....
T Consensus       110 ~v~~~~~SpDg~~l~~~~~-~~i~~~d~~~~~~~~~~~l~~~~~~~~~~~~SPDG~~la~~~~~~i~~~d~~~g~~~~~~  188 (741)
T 2ecf_A          110 GIVDYQWSPDAQRLLFPLG-GELYLYDLKQEGKAAVRQLTHGEGFATDAKLSPKGGFVSFIRGRNLWVIDLASGRQMQLT  188 (741)
T ss_dssp             ESCCCEECTTSSEEEEEET-TEEEEEESSSCSTTSCCBCCCSSSCEEEEEECTTSSEEEEEETTEEEEEETTTTEEEECC
T ss_pred             CcceeEECCCCCEEEEEeC-CcEEEEECCCCCcceEEEcccCCcccccccCCCCCCEEEEEeCCcEEEEecCCCCEEEec
Confidence            3889999999999999886 99999999765   22211111 111  11111111121  1227999999887765544


Q ss_pred             ccCCcc----------------eEEEEEeCCCCEEEeecCCC---------------------------------eEEEE
Q 042146           97 IGHTNY----------------VFCINFNPQSNRIVSDTFNE---------------------------------TIRIW  127 (262)
Q Consensus        97 ~~~~~~----------------v~~~~~~~~~~~l~~~~~dg---------------------------------~i~vw  127 (262)
                      ..+...                +..++|+|||++|++++.|+                                 .|.+|
T Consensus       189 ~~~~~~~~~g~~~~v~~~~~~~~~~~~~SpDg~~l~~~~~d~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~~~~l~~~  268 (741)
T 2ecf_A          189 ADGSTTIGNGIAEFVADEEMDRHTGYWWAPDDSAIAYARIDESPVPVQKRYEVYADRTDVIEQRYPAAGDANVQVKLGVI  268 (741)
T ss_dssp             CCCCSSEEESCCCHHHHHHSCCCCSEEECTTSSCEEEEEEECTTSCEEEEEEECSSCEEEEEEECCBTTSCCCEEEEEEE
T ss_pred             cCCccceeccccceeeeeccccccceEECCCCCEEEEEEEcCCCCceEecCCCCCCcccceEeecCCCCCCCCeeEEEEE
Confidence            433332                47899999999999887665                                 88999


Q ss_pred             ECCC-Ceeeeeee--cCCCCeeeEEEccCCCEEEEEeC-----CCeEEEEeCCC------------------------CC
Q 042146          128 DIKT-GKCLKVLP--AHSDPVTAIDFNRDGTMIVTSSY-----DGLYRILDAST------------------------PN  175 (262)
Q Consensus       128 d~~~-~~~~~~~~--~~~~~v~~~~~~~~~~~l~~~~~-----dg~i~~~d~~~------------------------~~  175 (262)
                      |+.+ ++......  .|...+..++| |||+.|++++.     +..|.+||+.+                        ++
T Consensus       269 d~~~~~~~~~~~~~~~~~~~~~~~~~-pDg~~l~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~spd  347 (741)
T 2ecf_A          269 SPAEQAQTQWIDLGKEQDIYLARVNW-RDPQHLSFQRQSRDQKKLDLVEVTLASNQQRVLAHETSPTWVPLHNSLRFLDD  347 (741)
T ss_dssp             CSSTTCCCEEECCCSCSSEEEEEEEE-EETTEEEEEEEETTSSEEEEEEEETTTCCEEEEEEEECSSCCCCCSCCEECTT
T ss_pred             ECCCCCceEEecCCCCcceEEEEEEe-CCCCEEEEEEecccCCeEEEEEEECCCCceEEEEEcCCCCcCCcCCceEECCC
Confidence            9988 77544432  36778999999 99999887764     56799998654                        67


Q ss_pred             ccEEEEEcCCCeEEEEecC-CCceeeEEeccCCceeEEEEEEecCCCeeEEccccceEEE-EEcCCCCeEEEeeecCCC-
Q 042146          176 GKFILVGTLDNTLRLWNYS-TRKILKTYSGYTNSKYCISSTFSVTNGKYIVSHRDPVISV-ASHPAKNIIASGALDNDR-  252 (262)
Q Consensus       176 ~~~l~~~~~dg~i~i~d~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~-~~~p~~~~l~~~~~d~d~-  252 (262)
                      ++++++++.+|.++||.+. .++ ...+..                      +...+..+ .|+|+++.|+..+. .++ 
T Consensus       348 g~~~~~~~~~g~~~l~~~~~~~~-~~~l~~----------------------~~~~v~~~~~~s~dg~~l~~~~~-~~~~  403 (741)
T 2ecf_A          348 GSILWSSERTGFQHLYRIDSKGK-AAALTH----------------------GNWSVDELLAVDEKAGLAYFRAG-IESA  403 (741)
T ss_dssp             SCEEEEECTTSSCEEEEECSSSC-EEESCC----------------------SSSCEEEEEEEETTTTEEEEEEC-SSCT
T ss_pred             CeEEEEecCCCccEEEEEcCCCC-eeeeee----------------------cceEEEeEeEEeCCCCEEEEEEe-CCCC
Confidence            7888888888877777654 344 555544                      66677777 59999987765542 355 


Q ss_pred             -cEEEEeec
Q 042146          253 -TMKIWTQE  260 (262)
Q Consensus       253 -~i~iw~~~  260 (262)
                       .++||+++
T Consensus       404 ~~~~l~~~~  412 (741)
T 2ecf_A          404 RESQIYAVP  412 (741)
T ss_dssp             TCBEEEEEE
T ss_pred             ceEEEEEEE
Confidence             89999875

>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}

Probab=99.85  E-value=4.3e-19  Score=137.91  Aligned_cols=206  Identities=14%  Similarity=0.137  Sum_probs=139.2

Q ss_pred             CCceeeec--cccc-ceecccCcCceEEEEEccCCCeEEEecCCC---eEEEeecCCCCCCCCCCCCCCccccCCccccc
Q 042146            4 DRSLESFR--PYTL-TQTLNGHLRAVSYVKFSHDGRLLTSSSAEK---TLLTYSLSSISNFDSTPPSPLQKFTGHEQGIS   77 (262)
Q Consensus         4 d~~i~~~~--~~~~-~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~---~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~   77 (262)
                      ++.|..|+  ..+. ...+..+..+..+++|+|++++|+++..++   .|.+||+                         
T Consensus        61 ~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~i~v~d~-------------------------  115 (331)
T 3u4y_A           61 CQTLVQIETQLEPPKVVAIQEGQSSMADVDITPDDQFAVTVTGLNHPFNMQSYSF-------------------------  115 (331)
T ss_dssp             TCEEEEEECSSSSCEEEEEEECSSCCCCEEECTTSSEEEECCCSSSSCEEEEEET-------------------------
T ss_pred             CCeEEEEECCCCceeEEecccCCCCccceEECCCCCEEEEecCCCCcccEEEEEC-------------------------
Confidence            45666665  3444 666777777776699999999999655553   7777754                         


Q ss_pred             cceeEEEEecCCCccceecccCCcceEEEEEeCCCCEEEee-cCCCe-EEEEECCCCeee----eeeecCCCCeeeEEEc
Q 042146           78 DLATIRLWDVPTATSLKTLIGHTNYVFCINFNPQSNRIVSD-TFNET-IRIWDIKTGKCL----KVLPAHSDPVTAIDFN  151 (262)
Q Consensus        78 ~~~~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~~dg~-i~vwd~~~~~~~----~~~~~~~~~v~~~~~~  151 (262)
                                .+++.+..+.. .....+++|+|++++++++ ..++. |.+|++.....+    ............++|+
T Consensus       116 ----------~~~~~~~~~~~-~~~~~~~~~spdg~~l~~~~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~s  184 (331)
T 3u4y_A          116 ----------LKNKFISTIPI-PYDAVGIAISPNGNGLILIDRSSANTVRRFKIDADGVLFDTGQEFISGGTRPFNITFT  184 (331)
T ss_dssp             ----------TTTEEEEEEEC-CTTEEEEEECTTSSCEEEEEETTTTEEEEEEECTTCCEEEEEEEEECSSSSEEEEEEC
T ss_pred             ----------CCCCeEEEEEC-CCCccceEECCCCCEEEEEecCCCceEEEEEECCCCcEeecCCccccCCCCccceEEC
Confidence                      44444444443 3446899999999865544 55578 999998753322    1122334567999999


Q ss_pred             cCCCEEEEE-eCCCeEEEEeCCC----------------------CCccEEEEEc-CCCeEEEEecCCCce--eeEEecc
Q 042146          152 RDGTMIVTS-SYDGLYRILDAST----------------------PNGKFILVGT-LDNTLRLWNYSTRKI--LKTYSGY  205 (262)
Q Consensus       152 ~~~~~l~~~-~~dg~i~~~d~~~----------------------~~~~~l~~~~-~dg~i~i~d~~~~~~--~~~~~~~  205 (262)
                      |++++++++ ..++.|.+||+..                      |+++++++++ .++.|.+||+.+++.  +..+...
T Consensus       185 pdg~~l~v~~~~~~~v~v~d~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~i~~~d~~~~~~~~~~~~~~~  264 (331)
T 3u4y_A          185 PDGNFAFVANLIGNSIGILETQNPENITLLNAVGTNNLPGTIVVSRDGSTVYVLTESTVDVFNFNQLSGTLSFVKSFGHG  264 (331)
T ss_dssp             TTSSEEEEEETTTTEEEEEECSSTTSCEEEEEEECSSCCCCEEECTTSSEEEEECSSEEEEEEEETTTTEEEEEEEEECC
T ss_pred             CCCCEEEEEeCCCCeEEEEECCCCcccceeeeccCCCCCceEEECCCCCEEEEEEcCCCEEEEEECCCCceeeecccccc
Confidence            999966554 4689999999864                      7888776655 577899999998876  4433321


Q ss_pred             CCceeEEEEEEecCCCeeEEccccceEEEEEcCCCCeEEEeeecCCCcEEEEeecc
Q 042146          206 TNSKYCISSTFSVTNGKYIVSHRDPVISVASHPAKNIIASGALDNDRTMKIWTQEK  261 (262)
Q Consensus       206 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~d~d~~i~iw~~~~  261 (262)
                      ...          ..     ........++|+|++++|++++. .++.|++|++..
T Consensus       265 ~~~----------~~-----~~~~~~~~~~~spdg~~l~v~~~-~~~~v~v~d~~~  304 (331)
T 3u4y_A          265 LLI----------DP-----RPLFGANQMALNKTETKLFISAN-ISRELKVFTISG  304 (331)
T ss_dssp             CCC----------CC-----GGGTTCCCEEECTTSSEEEEEET-TTTEEEEEETTS
T ss_pred             ccc----------CC-----CCcccccceEECCCCCEEEEecC-CCCcEEEEEecC
Confidence            000          00     01222356899999998877663 467999999865

>2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A*

Probab=99.85  E-value=1.9e-19  Score=153.67  Aligned_cols=234  Identities=14%  Similarity=0.175  Sum_probs=154.4

Q ss_pred             CCCceeeeccc-ccceecccCcCceEEEEEccCCCeEEEecCCCeEEEeecCC-----CCCCCCCCC--C----------
Q 042146            3 SDRSLESFRPY-TLTQTLNGHLRAVSYVKFSHDGRLLTSSSAEKTLLTYSLSS-----ISNFDSTPP--S----------   64 (262)
Q Consensus         3 ~d~~i~~~~~~-~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~iw~~~~-----~~~~~~~~~--~----------   64 (262)
                      .|++++.|+.. .....+..+...+.+++|+|||++|+++ .++.|++|++.+     .........  .          
T Consensus        99 ~~~~i~~~d~~~~~~~~l~~~~~~~~~~~~SpdG~~la~~-~~~~i~v~~~~~~~~~~g~~~~~~~~~~~~~~~g~~~~~  177 (706)
T 2z3z_A           99 TQGGLVGFDMLARKVTYLFDTNEETASLDFSPVGDRVAYV-RNHNLYIARGGKLGEGMSRAIAVTIDGTETLVYGQAVHQ  177 (706)
T ss_dssp             ETTEEEEEETTTTEEEEEECCTTCCTTCEECTTSSEEEEE-ETTEEEEEECBCTTSCCCCCEESCSCCBTTEEESSCCGG
T ss_pred             ECCEEEEEECCCCceEEccCCcccccCCcCCCCCCEEEEE-ECCeEEEEecCcccccCCCcEEeccCCCCCeEcccchhh
Confidence            45677777632 2333455677889999999999999995 689999999976     432211111  0          


Q ss_pred             ------CCccccCCccccc------------------------------------cceeEEEEecCCCccceec--ccCC
Q 042146           65 ------PLQKFTGHEQGIS------------------------------------DLATIRLWDVPTATSLKTL--IGHT  100 (262)
Q Consensus        65 ------~~~~~~~~~~~v~------------------------------------~~~~i~v~d~~~~~~~~~~--~~~~  100 (262)
                            ....+......+.                                    ....|++||+.+++.....  ..|.
T Consensus       178 ee~~~~~~~~~SpDg~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~  257 (706)
T 2z3z_A          178 REFGIEKGTFWSPKGSCLAFYRMDQSMVKPTPIVDYHPLEAESKPLYYPMAGTPSHHVTVGIYHLATGKTVYLQTGEPKE  257 (706)
T ss_dssp             GCTTCCCSEEECTTSSEEEEEEEECTTSCCEEEEECCSSSCEEEEECCCBTTSCCCEEEEEEEETTTTEEEECCCCSCTT
T ss_pred             hhcCCCceEEECCCCCEEEEEEECCCCCceEEeeccCCCCCceEEeeCCCCCCCCCeeEEEEEECCCCceEeeccCCCCc
Confidence                  0111111111111                                    1247999999887754433  2466


Q ss_pred             cceEEEEEeCCCCEEEeecCCC-----eEEEEECCCCeeeeeee-c-CCC---CeeeEEEcc--CCCEEEEEeCCCeEEE
Q 042146          101 NYVFCINFNPQSNRIVSDTFNE-----TIRIWDIKTGKCLKVLP-A-HSD---PVTAIDFNR--DGTMIVTSSYDGLYRI  168 (262)
Q Consensus       101 ~~v~~~~~~~~~~~l~~~~~dg-----~i~vwd~~~~~~~~~~~-~-~~~---~v~~~~~~~--~~~~l~~~~~dg~i~~  168 (262)
                      ..+.+++|+|++++|++++.++     .|.+||+.+++....+. . +..   .+.+++|+|  +|+++++++.|+.+++
T Consensus       258 ~~~~~~~~spdg~~l~~~~~~~~~~~~~v~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~sp~~dg~~l~~~~~~g~~~l  337 (706)
T 2z3z_A          258 KFLTNLSWSPDENILYVAEVNRAQNECKVNAYDAETGRFVRTLFVETDKHYVEPLHPLTFLPGSNNQFIWQSRRDGWNHL  337 (706)
T ss_dssp             CEEEEEEECTTSSEEEEEEECTTSCEEEEEEEETTTCCEEEEEEEEECSSCCCCCSCCEECTTCSSEEEEEECTTSSCEE
T ss_pred             eeEeeEEEECCCCEEEEEEeCCCCCeeEEEEEECCCCceeeEEEEccCCCeECccCCceeecCCCCEEEEEEccCCccEE
Confidence            7899999999999998877665     89999999883333332 2 222   346789999  9999999999998888


Q ss_pred             EeCCC----------------------CCccEEEEE-cCCC----eEEEEecCCCceeeEEeccCCceeEEEEEEecCCC
Q 042146          169 LDAST----------------------PNGKFILVG-TLDN----TLRLWNYSTRKILKTYSGYTNSKYCISSTFSVTNG  221 (262)
Q Consensus       169 ~d~~~----------------------~~~~~l~~~-~~dg----~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  221 (262)
                      |++..                      ++++.|+.+ ..++    .|+.||+.+++ ...+.                  
T Consensus       338 ~~~~~~~~~~~~l~~~~~~v~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~~~-~~~l~------------------  398 (706)
T 2z3z_A          338 YLYDTTGRLIRQVTKGEWEVTNFAGFDPKGTRLYFESTEASPLERHFYCIDIKGGK-TKDLT------------------  398 (706)
T ss_dssp             EEEETTSCEEEECCCSSSCEEEEEEECTTSSEEEEEESSSCTTCBEEEEEETTCCC-CEESC------------------
T ss_pred             EEEECCCCEEEecCCCCeEEEeeeEEcCCCCEEEEEecCCCCceEEEEEEEcCCCC-ceecc------------------
Confidence            87642                      556555443 3333    56666666554 22222                  


Q ss_pred             eeEEccccceEEEEEcCCCCeEEEeeecCC--CcEEEEeecc
Q 042146          222 KYIVSHRDPVISVASHPAKNIIASGALDND--RTMKIWTQEK  261 (262)
Q Consensus       222 ~~~~~~~~~v~~~~~~p~~~~l~~~~~d~d--~~i~iw~~~~  261 (262)
                           +...+.+++|+|++++|+.++.+.+  +.|++|+++.
T Consensus       399 -----~~~~~~~~~~spdg~~l~~~~~~~~~p~~i~l~d~~~  435 (706)
T 2z3z_A          399 -----PESGMHRTQLSPDGSAIIDIFQSPTVPRKVTVTNIGK  435 (706)
T ss_dssp             -----CSSSEEEEEECTTSSEEEEEEECSSCSCEEEEEESSS
T ss_pred             -----CCCceEEEEECCCCCEEEEEecCCCCCcEEEEEECCC
Confidence                 5567889999999998887752111  5699999764

>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B*

Probab=99.84  E-value=3.7e-19  Score=139.05  Aligned_cols=193  Identities=12%  Similarity=0.136  Sum_probs=134.5

Q ss_pred             CCCceeeec--ccccceecccCc-CceEEEEEccCCCeE-EEecCCCeEEEeecCCCCCCCCCCCCCCccccCCcccccc
Q 042146            3 SDRSLESFR--PYTLTQTLNGHL-RAVSYVKFSHDGRLL-TSSSAEKTLLTYSLSSISNFDSTPPSPLQKFTGHEQGISD   78 (262)
Q Consensus         3 ~d~~i~~~~--~~~~~~~~~~h~-~~v~~~~~~~~~~~l-~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~   78 (262)
                      .|++|..|+  ..+.+..+..+. ..+..++|+|+++++ +++..++.|.+||+.                         
T Consensus        19 ~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~v~~~~~~~i~~~d~~-------------------------   73 (349)
T 1jmx_B           19 YPNNLHVVDVASDTVYKSCVMPDKFGPGTAMMAPDNRTAYVLNNHYGDIYGIDLD-------------------------   73 (349)
T ss_dssp             TTTEEEEEETTTTEEEEEEECSSCCSSCEEEECTTSSEEEEEETTTTEEEEEETT-------------------------
T ss_pred             CCCeEEEEECCCCcEEEEEecCCCCCCceeEECCCCCEEEEEeCCCCcEEEEeCC-------------------------
Confidence            467788886  345666665443 257899999999865 455677888888654                         


Q ss_pred             ceeEEEEecCCCccceeccc-C-----CcceEEEEEeCCCCEEEeecCC------------CeEEEEECCCCee---eee
Q 042146           79 LATIRLWDVPTATSLKTLIG-H-----TNYVFCINFNPQSNRIVSDTFN------------ETIRIWDIKTGKC---LKV  137 (262)
Q Consensus        79 ~~~i~v~d~~~~~~~~~~~~-~-----~~~v~~~~~~~~~~~l~~~~~d------------g~i~vwd~~~~~~---~~~  137 (262)
                                +++.+..+.. +     ...+..++|+|+++++++++.+            +.|.+||+.+++.   +..
T Consensus        74 ----------t~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~  143 (349)
T 1jmx_B           74 ----------TCKNTFHANLSSVPGEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEAKPVRT  143 (349)
T ss_dssp             ----------TTEEEEEEESCCSTTEEEECSSCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEEGGGGGGBCCSEE
T ss_pred             ----------CCcEEEEEEcccccccccccccceEECCCCCEEEEEcccccccccccccCCCeEEEEECCCccccceeee
Confidence                      3333322221 1     2336789999999999988865            8999999988543   333


Q ss_pred             eecCCCCeeeEEEccCCCEEEEEeCCCeEEEEeCCC--------------------------------------------
Q 042146          138 LPAHSDPVTAIDFNRDGTMIVTSSYDGLYRILDAST--------------------------------------------  173 (262)
Q Consensus       138 ~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~d~~~--------------------------------------------  173 (262)
                      +. +...+.+++|+|+++ +++++.  .|.+||+.+                                            
T Consensus       144 ~~-~~~~~~~~~~s~dg~-l~~~~~--~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  219 (349)
T 1jmx_B          144 FP-MPRQVYLMRAADDGS-LYVAGP--DIYKMDVKTGKYTVALPLRNWNRKGYSAPDVLYFWPHQSPRHEFSMLYTIARF  219 (349)
T ss_dssp             EE-CCSSCCCEEECTTSC-EEEESS--SEEEECTTTCCEEEEECSTTCCCTTBCCCBCCCCCCCCCTTCEEEEEEEEEEC
T ss_pred             cc-CCCcccceeECCCCc-EEEccC--cEEEEeCCCCceeccccccccCCccccCccceeeecCCCcceeEEeeeeeeec
Confidence            43 344689999999999 555543  388898754                                            


Q ss_pred             --------------------------------------------C-CccEEEEEcCCCeEEEEecCCCceeeEEeccCCc
Q 042146          174 --------------------------------------------P-NGKFILVGTLDNTLRLWNYSTRKILKTYSGYTNS  208 (262)
Q Consensus       174 --------------------------------------------~-~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~  208 (262)
                                                                  | ++++++++  ++.|.+||+.+++.+..+.     
T Consensus       220 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~dg~~l~~~--~~~v~~~d~~~~~~~~~~~-----  292 (349)
T 1jmx_B          220 KDDKQDPATADLLYGYLSVDLKTGKTHTQEFADLTELYFTGLRSPKDPNQIYGV--LNRLAKYDLKQRKLIKAAN-----  292 (349)
T ss_dssp             -------CCCEEEEEEEEEETTTCCEEEEEEEECSSCEEEEEECSSCTTEEEEE--ESEEEEEETTTTEEEEEEE-----
T ss_pred             CCCcCCccccccceeEEEEeccCCcEEecccccCCCcceeeEecCCCCCEEEEE--cCeEEEEECccCeEEEEEc-----
Confidence                                                        1 34444444  5677777777776666554     


Q ss_pred             eeEEEEEEecCCCeeEEccccceEEEEEcCCCCeEEEeeecCCCcEEEEeecc
Q 042146          209 KYCISSTFSVTNGKYIVSHRDPVISVASHPAKNIIASGALDNDRTMKIWTQEK  261 (262)
Q Consensus       209 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~d~d~~i~iw~~~~  261 (262)
                                        ....+.+++|+|+++.|++++  .++.|++||+++
T Consensus       293 ------------------~~~~~~~~~~s~dg~~l~~~~--~~~~v~v~d~~~  325 (349)
T 1jmx_B          293 ------------------LDHTYYCVAFDKKGDKLYLGG--TFNDLAVFNPDT  325 (349)
T ss_dssp             ------------------CSSCCCEEEECSSSSCEEEES--BSSEEEEEETTT
T ss_pred             ------------------CCCCccceEECCCCCEEEEec--CCCeEEEEeccc
Confidence                              333567899999999888887  789999999864

>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str}

Probab=99.84  E-value=1.7e-19  Score=137.45  Aligned_cols=190  Identities=14%  Similarity=0.137  Sum_probs=137.3

Q ss_pred             CCceeeec--c-cccceecccC-cCceEEEEEccCCCeEEEec--CCCeEEEeecCCCCCCCCCCCCCCccccCCccccc
Q 042146            4 DRSLESFR--P-YTLTQTLNGH-LRAVSYVKFSHDGRLLTSSS--AEKTLLTYSLSSISNFDSTPPSPLQKFTGHEQGIS   77 (262)
Q Consensus         4 d~~i~~~~--~-~~~~~~~~~h-~~~v~~~~~~~~~~~l~s~~--~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~   77 (262)
                      ++.|..|+  . .+.......| ...+.+++|+|++++|++++  .++...||.                          
T Consensus        61 ~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~l~~--------------------------  114 (297)
T 2ojh_A           61 EGLLYRLSLAGDPSPEKVDTGFATICNNDHGISPDGALYAISDKVEFGKSAIYL--------------------------  114 (297)
T ss_dssp             TTEEEEEESSSCCSCEECCCTTCCCBCSCCEECTTSSEEEEEECTTTSSCEEEE--------------------------
T ss_pred             CCeEEEEeCCCCCCceEeccccccccccceEECCCCCEEEEEEeCCCCcceEEE--------------------------
Confidence            55666665  3 4455555555 47789999999999999998  445555553                          


Q ss_pred             cceeEEEEecCCCccceecccCCcceEEEEEeCCCCEEE-eecCCCeEEEEECCC-CeeeeeeecCCCCeeeEEEccCCC
Q 042146           78 DLATIRLWDVPTATSLKTLIGHTNYVFCINFNPQSNRIV-SDTFNETIRIWDIKT-GKCLKVLPAHSDPVTAIDFNRDGT  155 (262)
Q Consensus        78 ~~~~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~-~~~~dg~i~vwd~~~-~~~~~~~~~~~~~v~~~~~~~~~~  155 (262)
                             ++..++. ...+..+ ..+..++|+|++++++ ++..++.+.+|++.. +.....+..+...+.+++|+|+++
T Consensus       115 -------~~~~~~~-~~~~~~~-~~~~~~~~spdg~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~  185 (297)
T 2ojh_A          115 -------LPSTGGT-PRLMTKN-LPSYWHGWSPDGKSFTYCGIRDQVFDIYSMDIDSGVETRLTHGEGRNDGPDYSPDGR  185 (297)
T ss_dssp             -------EETTCCC-CEECCSS-SSEEEEEECTTSSEEEEEEEETTEEEEEEEETTTCCEEECCCSSSCEEEEEECTTSS
T ss_pred             -------EECCCCc-eEEeecC-CCccceEECCCCCEEEEEECCCCceEEEEEECCCCcceEcccCCCccccceECCCCC
Confidence                   3333333 2333333 3488899999999877 777899999998532 233455666788899999999999


Q ss_pred             EEEEEe-CCCeEEEEeCCC---------------------CCccEEEEEcCC-----------CeEEEEecCCCceeeEE
Q 042146          156 MIVTSS-YDGLYRILDAST---------------------PNGKFILVGTLD-----------NTLRLWNYSTRKILKTY  202 (262)
Q Consensus       156 ~l~~~~-~dg~i~~~d~~~---------------------~~~~~l~~~~~d-----------g~i~i~d~~~~~~~~~~  202 (262)
                      .|+.++ .++.+.+|++..                     |++++|++++.+           +.|++||+.+++.....
T Consensus       186 ~l~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~  265 (297)
T 2ojh_A          186 WIYFNSSRTGQMQIWRVRVDGSSVERITDSAYGDWFPHPSPSGDKVVFVSYDADVFDHPRDLDVRVQLMDMDGGNVETLF  265 (297)
T ss_dssp             EEEEEECTTSSCEEEEEETTSSCEEECCCCSEEEEEEEECTTSSEEEEEEEETTCCSCCSSEEEEEEEEETTSCSCEEEE
T ss_pred             EEEEEecCCCCccEEEECCCCCCcEEEecCCcccCCeEECCCCCEEEEEEcCCCCCcccccCceEEEEEecCCCCceeee
Confidence            887766 588999998752                     788988888765           56999999887654333


Q ss_pred             eccCCceeEEEEEEecCCCeeEEccccceEEEEEcCCCCeEEEeee
Q 042146          203 SGYTNSKYCISSTFSVTNGKYIVSHRDPVISVASHPAKNIIASGAL  248 (262)
Q Consensus       203 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~  248 (262)
                      ..                    .+|...+..++|+|+++.|++++.
T Consensus       266 ~~--------------------~~~~~~~~~~~~spdg~~l~~~~~  291 (297)
T 2ojh_A          266 DL--------------------FGGQGTMNSPNWSPDGDEFAYVRY  291 (297)
T ss_dssp             EE--------------------EESTTTSCSCCBCTTSSEEEEEEE
T ss_pred             cc--------------------CCCCcccccceECCCCCEEEEEEe
Confidence            21                    016778899999999999998873

>2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A*

Probab=99.84  E-value=9.6e-19  Score=149.31  Aligned_cols=211  Identities=12%  Similarity=0.127  Sum_probs=146.0

Q ss_pred             CceEEEEEccCCCeEEEecCCCeEEEeecCCCCCCCCC---CCCCCccccCCcccc--ccceeEEEEecCC-----Cccc
Q 042146           24 RAVSYVKFSHDGRLLTSSSAEKTLLTYSLSSISNFDST---PPSPLQKFTGHEQGI--SDLATIRLWDVPT-----ATSL   93 (262)
Q Consensus        24 ~~v~~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~---~~~~~~~~~~~~~~v--~~~~~i~v~d~~~-----~~~~   93 (262)
                      ..|.+++|+|| +.++.+. ++.|++||+.+.......   .......+......+  .....|++||+.+     ++..
T Consensus        82 ~~v~~~~~spd-~~~~~~~-~~~i~~~d~~~~~~~~l~~~~~~~~~~~~SpdG~~la~~~~~~i~v~~~~~~~~~~g~~~  159 (706)
T 2z3z_A           82 FPSFRTLDAGR-GLVVLFT-QGGLVGFDMLARKVTYLFDTNEETASLDFSPVGDRVAYVRNHNLYIARGGKLGEGMSRAI  159 (706)
T ss_dssp             CCCEEEEETTT-TEEEEEE-TTEEEEEETTTTEEEEEECCTTCCTTCEECTTSSEEEEEETTEEEEEECBCTTSCCCCCE
T ss_pred             cCceeEEECCC-CeEEEEE-CCEEEEEECCCCceEEccCCcccccCCcCCCCCCEEEEEECCeEEEEecCcccccCCCcE
Confidence            56999999999 6555553 599999998764321111   111111222222112  1234899999988     7665


Q ss_pred             eecccCCcc--------------eEEEEEeCCCCEEEeec---------------------------------CCCeEEE
Q 042146           94 KTLIGHTNY--------------VFCINFNPQSNRIVSDT---------------------------------FNETIRI  126 (262)
Q Consensus        94 ~~~~~~~~~--------------v~~~~~~~~~~~l~~~~---------------------------------~dg~i~v  126 (262)
                      .....+...              +.+++|+|||++|++++                                 .+..|.+
T Consensus       160 ~~~~~~~~~~~~g~~~~~ee~~~~~~~~~SpDg~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~~l~~  239 (706)
T 2z3z_A          160 AVTIDGTETLVYGQAVHQREFGIEKGTFWSPKGSCLAFYRMDQSMVKPTPIVDYHPLEAESKPLYYPMAGTPSHHVTVGI  239 (706)
T ss_dssp             ESCSCCBTTEEESSCCGGGCTTCCCSEEECTTSSEEEEEEEECTTSCCEEEEECCSSSCEEEEECCCBTTSCCCEEEEEE
T ss_pred             EeccCCCCCeEcccchhhhhcCCCceEEECCCCCEEEEEEECCCCCceEEeeccCCCCCceEEeeCCCCCCCCCeeEEEE
Confidence            544433332              48899999999999887                                 4468999


Q ss_pred             EECCCCeeeeeee--cCCCCeeeEEEccCCCEEEEEeCCC-----eEEEEeCCC-------------------------C
Q 042146          127 WDIKTGKCLKVLP--AHSDPVTAIDFNRDGTMIVTSSYDG-----LYRILDAST-------------------------P  174 (262)
Q Consensus       127 wd~~~~~~~~~~~--~~~~~v~~~~~~~~~~~l~~~~~dg-----~i~~~d~~~-------------------------~  174 (262)
                      ||+.+++......  .|...+.+++|+|+|+.|++++.++     .|.+||+.+                         |
T Consensus       240 ~d~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~v~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~sp  319 (706)
T 2z3z_A          240 YHLATGKTVYLQTGEPKEKFLTNLSWSPDENILYVAEVNRAQNECKVNAYDAETGRFVRTLFVETDKHYVEPLHPLTFLP  319 (706)
T ss_dssp             EETTTTEEEECCCCSCTTCEEEEEEECTTSSEEEEEEECTTSCEEEEEEEETTTCCEEEEEEEEECSSCCCCCSCCEECT
T ss_pred             EECCCCceEeeccCCCCceeEeeEEEECCCCEEEEEEeCCCCCeeEEEEEECCCCceeeEEEEccCCCeECccCCceeec
Confidence            9999887654432  4667899999999999999988776     899998654                         5


Q ss_pred             --CccEEEEEcCCCeEEEEecC-CCceeeEEeccCCceeEEEEEEecCCCeeEEccccceEE-EEEcCCCCeEEEeeecC
Q 042146          175 --NGKFILVGTLDNTLRLWNYS-TRKILKTYSGYTNSKYCISSTFSVTNGKYIVSHRDPVIS-VASHPAKNIIASGALDN  250 (262)
Q Consensus       175 --~~~~l~~~~~dg~i~i~d~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~-~~~~p~~~~l~~~~~d~  250 (262)
                        ++++++++..+|.++||.+. ++..+..+..                      +...+.. ++|+|+++.|+.++. .
T Consensus       320 ~~dg~~l~~~~~~g~~~l~~~~~~~~~~~~l~~----------------------~~~~v~~~~~~spdg~~l~~~~~-~  376 (706)
T 2z3z_A          320 GSNNQFIWQSRRDGWNHLYLYDTTGRLIRQVTK----------------------GEWEVTNFAGFDPKGTRLYFEST-E  376 (706)
T ss_dssp             TCSSEEEEEECTTSSCEEEEEETTSCEEEECCC----------------------SSSCEEEEEEECTTSSEEEEEES-S
T ss_pred             CCCCEEEEEEccCCccEEEEEECCCCEEEecCC----------------------CCeEEEeeeEEcCCCCEEEEEec-C
Confidence              78888888888888888776 5666666654                      5566766 799999998877663 3


Q ss_pred             CC--cEEEEee
Q 042146          251 DR--TMKIWTQ  259 (262)
Q Consensus       251 d~--~i~iw~~  259 (262)
                      ++  .+.||.+
T Consensus       377 ~~~~~~~l~~~  387 (706)
T 2z3z_A          377 ASPLERHFYCI  387 (706)
T ss_dssp             SCTTCBEEEEE
T ss_pred             CCCceEEEEEE
Confidence            44  3455543

>3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A

Probab=99.84  E-value=7.9e-20  Score=152.72  Aligned_cols=207  Identities=9%  Similarity=-0.013  Sum_probs=138.1

Q ss_pred             CcCceEEEEEccCCCeEEEecC-CCeEEEeecCCCCCCCCCCCC--CCccccCCcccccc-------ceeEEEEecCC--
Q 042146           22 HLRAVSYVKFSHDGRLLTSSSA-EKTLLTYSLSSISNFDSTPPS--PLQKFTGHEQGISD-------LATIRLWDVPT--   89 (262)
Q Consensus        22 h~~~v~~~~~~~~~~~l~s~~~-d~~i~iw~~~~~~~~~~~~~~--~~~~~~~~~~~v~~-------~~~i~v~d~~~--   89 (262)
                      +..+|.+++|+|||++||+++. ||+++||+++...........  ...........+..       .....+|.+..  
T Consensus        20 ~~~~~~~~~~~~DG~~la~~s~~~g~~~lw~~~~g~~~~lt~~~~~~~~~~~~spd~~l~~~~~~~g~~~~~l~~~~~~~   99 (582)
T 3o4h_A           20 IAVEKYSLQGVVDGDKLLVVGFSEGSVNAYLYDGGETVKLNREPINSVLDPHYGVGRVILVRDVSKGAEQHALFKVNTSR   99 (582)
T ss_dssp             HHSCEEEEEEEETTTEEEEEEEETTEEEEEEEETTEEEECCSSCCSEECEECTTCSEEEEEEECSTTSCCEEEEEEETTS
T ss_pred             hccchheeecCCCCCeEEEEEccCCceeEEEEcCCCcEeeecccccccccccCCCCeEEEEeccCCCCcceEEEEEeccC
Confidence            3668999999999999999887 999999998553221111111  11110011111111       11234443322  


Q ss_pred             -CccceecccCCcceEEEEEeCCCCE--EEeecCCCeEEEEECCCCeeeeeeecCCCCeeeEEEccCCCEEEEEeCC---
Q 042146           90 -ATSLKTLIGHTNYVFCINFNPQSNR--IVSDTFNETIRIWDIKTGKCLKVLPAHSDPVTAIDFNRDGTMIVTSSYD---  163 (262)
Q Consensus        90 -~~~~~~~~~~~~~v~~~~~~~~~~~--l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d---  163 (262)
                       +... .+... ..+...+|+|+++.  +++++. +.+.+||+.+++....... ..  .+++|+|||+.+++++.+   
T Consensus       100 ~g~~~-~l~~~-~~~~~~~~s~dg~~~~~~s~~~-~~~~l~d~~~g~~~~l~~~-~~--~~~~~spDG~~la~~~~~~~~  173 (582)
T 3o4h_A          100 PGEEQ-RLEAV-KPMRILSGVDTGEAVVFTGATE-DRVALYALDGGGLRELARL-PG--FGFVSDIRGDLIAGLGFFGGG  173 (582)
T ss_dssp             TTCCE-ECTTS-CSBEEEEEEECSSCEEEEEECS-SCEEEEEEETTEEEEEEEE-SS--CEEEEEEETTEEEEEEEEETT
T ss_pred             CCccc-cccCC-CCceeeeeCCCCCeEEEEecCC-CCceEEEccCCcEEEeecC-CC--ceEEECCCCCEEEEEEEcCCC
Confidence             2222 33222 23446688888753  444444 4555999998876555443 33  889999999999988877   


Q ss_pred             -CeEEEEeCCC-------------------CCccEEEEEcCCC--eEEEEecCCCceeeEEeccCCceeEEEEEEecCCC
Q 042146          164 -GLYRILDAST-------------------PNGKFILVGTLDN--TLRLWNYSTRKILKTYSGYTNSKYCISSTFSVTNG  221 (262)
Q Consensus       164 -g~i~~~d~~~-------------------~~~~~l~~~~~dg--~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  221 (262)
                       +.|++||+.+                   |||+.|+++..++  .|++||+.+++.. .+..                 
T Consensus       174 ~~~i~~~d~~~g~~~~l~~~~~~~~~~~~SpDG~~l~~~~~~~~~~i~~~d~~~~~~~-~~~~-----------------  235 (582)
T 3o4h_A          174 RVSLFTSNLSSGGLRVFDSGEGSFSSASISPGMKVTAGLETAREARLVTVDPRDGSVE-DLEL-----------------  235 (582)
T ss_dssp             EEEEEEEETTTCCCEEECCSSCEEEEEEECTTSCEEEEEECSSCEEEEEECTTTCCEE-ECCC-----------------
T ss_pred             CeEEEEEcCCCCCceEeecCCCccccceECCCCCEEEEccCCCeeEEEEEcCCCCcEE-EccC-----------------
Confidence             7899999765                   8999999888888  8999999988877 5554                 


Q ss_pred             eeEEccccceEEEE--------EcCCCCeEEEeeecCCCcEEEEee
Q 042146          222 KYIVSHRDPVISVA--------SHPAKNIIASGALDNDRTMKIWTQ  259 (262)
Q Consensus       222 ~~~~~~~~~v~~~~--------~~p~~~~l~~~~~d~d~~i~iw~~  259 (262)
                           |...+..++        |+|+|.++++++  .|+.+++|++
T Consensus       236 -----~~~~~~~~~~~~~~~~~~spdg~~~~~~~--~~g~~~l~~~  274 (582)
T 3o4h_A          236 -----PSKDFSSYRPTAITWLGYLPDGRLAVVAR--REGRSAVFID  274 (582)
T ss_dssp             -----SCSHHHHHCCSEEEEEEECTTSCEEEEEE--ETTEEEEEET
T ss_pred             -----CCcChhhhhhccccceeEcCCCcEEEEEE--cCCcEEEEEE
Confidence                 333444444        999998888888  7899999986

>1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A*

Probab=99.84  E-value=3.2e-19  Score=158.30  Aligned_cols=221  Identities=15%  Similarity=0.100  Sum_probs=162.9

Q ss_pred             ccceecccCcCceEEEEEccCCCeEEEecCCCeEEEeecCCC--CCCCCCCCCC--CccccCCcccc--ccceeEEEEec
Q 042146           14 TLTQTLNGHLRAVSYVKFSHDGRLLTSSSAEKTLLTYSLSSI--SNFDSTPPSP--LQKFTGHEQGI--SDLATIRLWDV   87 (262)
Q Consensus        14 ~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~iw~~~~~--~~~~~~~~~~--~~~~~~~~~~v--~~~~~i~v~d~   87 (262)
                      .....+.+|...+.++.|+++ .++++++.|+.+.+|.+...  ..........  ...+......+  .....|.+|++
T Consensus       194 ~~~~~l~~~~~~v~~~~~s~d-~l~~~~~~dg~~~l~~~~~~g~~~~~l~~~~~~~~~~~SpDG~~la~~~~~~i~~~d~  272 (1045)
T 1k32_A          194 GAFKKIVDMSTHVSSPVIVGH-RIYFITDIDGFGQIYSTDLDGKDLRKHTSFTDYYPRHLNTDGRRILFSKGGSIYIFNP  272 (1045)
T ss_dssp             TEEEEEECCSSCCEEEEEETT-EEEEEECTTSSCEEEEEETTSCSCEECCCCCSSCEEEEEESSSCEEEEETTEEEEECT
T ss_pred             CCeEECcCCCCcccceEEeCC-EEEEEEeccCceEEEEEeCCCCcceEecCCCCcceeeEcCCCCEEEEEeCCEEEEecC
Confidence            444556899999999999998 67778888999999986531  1100100010  11111111111  12337899998


Q ss_pred             CCCccceeccc-----------CCcceEEEEEe-CCCCEEEeecCCCeEEEEECCCCeeeeeeecCCC-CeeeEEEccCC
Q 042146           88 PTATSLKTLIG-----------HTNYVFCINFN-PQSNRIVSDTFNETIRIWDIKTGKCLKVLPAHSD-PVTAIDFNRDG  154 (262)
Q Consensus        88 ~~~~~~~~~~~-----------~~~~v~~~~~~-~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~-~v~~~~~~~~~  154 (262)
                      .. ..+..+..           |...+.+++|+ |+|+++++++ ++.|.+|++..++... +..|.. .+..++|+ +|
T Consensus       273 ~~-~~l~~l~~~~~~~~~~~~~~~~~v~~~~~S~pdG~~la~~~-~~~i~~~~~~~~~~~~-~~~~~~~~~~~~~~s-dg  348 (1045)
T 1k32_A          273 DT-EKIEKIEIGDLESPEDRIISIPSKFAEDFSPLDGDLIAFVS-RGQAFIQDVSGTYVLK-VPEPLRIRYVRRGGD-TK  348 (1045)
T ss_dssp             TT-CCEEECCCCCCCBCCSEEEECGGGGEEEEEECGGGCEEEEE-TTEEEEECTTSSBEEE-CSCCSCEEEEEECSS-SE
T ss_pred             Cc-eEeeeeccCcccccccccccccccceeeecCCCCCEEEEEE-cCEEEEEcCCCCceEE-ccCCCcceEEeeeEc-CC
Confidence            43 33334443           34468999999 9999998887 7899999998776543 556777 89999999 99


Q ss_pred             CEEEEEeCCCeEE-EEeCCC-------------------CCccEEEEEcCCCeEEEEecCCCceeeEEeccCCceeEEEE
Q 042146          155 TMIVTSSYDGLYR-ILDAST-------------------PNGKFILVGTLDNTLRLWNYSTRKILKTYSGYTNSKYCISS  214 (262)
Q Consensus       155 ~~l~~~~~dg~i~-~~d~~~-------------------~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~  214 (262)
                      +.|+.++.++.+. +||+..                   |++++|++++.++.|++||+.+++....+..          
T Consensus       349 ~~l~~~s~~~~l~~~~d~~~~~~~~l~~~~~~~~~~~~SpDG~~la~~~~~~~v~~~d~~tg~~~~~~~~----------  418 (1045)
T 1k32_A          349 VAFIHGTREGDFLGIYDYRTGKAEKFEENLGNVFAMGVDRNGKFAVVANDRFEIMTVDLETGKPTVIERS----------  418 (1045)
T ss_dssp             EEEEEEETTEEEEEEEETTTCCEEECCCCCCSEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEEC----------
T ss_pred             CeEEEEECCCceEEEEECCCCCceEecCCccceeeeEECCCCCEEEEECCCCeEEEEECCCCceEEeccC----------
Confidence            9999999888888 888754                   8999999999999999999999988777655          


Q ss_pred             EEecCCCeeEEccccceEEEEEcCCCCeEEEeeecC--------CCcEEEEeecc
Q 042146          215 TFSVTNGKYIVSHRDPVISVASHPAKNIIASGALDN--------DRTMKIWTQEK  261 (262)
Q Consensus       215 ~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~d~--------d~~i~iw~~~~  261 (262)
                                  |...+..++|+|+|++|++++.+.        ++.|++|++..
T Consensus       419 ------------~~~~v~~~~~SpDG~~la~~~~~~~~~~~~~~~~~i~l~d~~~  461 (1045)
T 1k32_A          419 ------------REAMITDFTISDNSRFIAYGFPLKHGETDGYVMQAIHVYDMEG  461 (1045)
T ss_dssp             ------------SSSCCCCEEECTTSCEEEEEEEECSSTTCSCCEEEEEEEETTT
T ss_pred             ------------CCCCccceEECCCCCeEEEEecCccccccCCCCCeEEEEECCC
Confidence                        777889999999999999887321        24899999864

>1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24

Probab=99.83  E-value=7.7e-20  Score=156.40  Aligned_cols=138  Identities=10%  Similarity=0.079  Sum_probs=94.3

Q ss_pred             ceEEEEEccCCCeEEEecCCCeEEEeecCCCCCCCCCCCCC-----Cc--cccCCccccc------------cceeEEEE
Q 042146           25 AVSYVKFSHDGRLLTSSSAEKTLLTYSLSSISNFDSTPPSP-----LQ--KFTGHEQGIS------------DLATIRLW   85 (262)
Q Consensus        25 ~v~~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~-----~~--~~~~~~~~v~------------~~~~i~v~   85 (262)
                      .+.+++|+|||+++++ +.||+|++||+.+...........     +.  .+......+.            ....+.+|
T Consensus        18 ~~~~~~~spdg~~~~~-~~dg~i~~~d~~~g~~~~~~~~~~~~~~~v~~~~~SpDg~~l~~~~~~~~~~~~~~~~~i~~~   96 (723)
T 1xfd_A           18 HDPEAKWISDTEFIYR-EQKGTVRLWNVETNTSTVLIEGKKIESLRAIRYEISPDREYALFSYNVEPIYQHSYTGYYVLS   96 (723)
T ss_dssp             CCCCCCBSSSSCBCCC-CSSSCEEEBCGGGCCCEEEECTTTTTTTTCSEEEECTTSSEEEEEESCCCCSSSCCCSEEEEE
T ss_pred             cccccEEcCCCcEEEE-eCCCCEEEEECCCCcEEEEeccccccccccceEEECCCCCEEEEEecCccceeecceeeEEEE
Confidence            4678999999997766 789999999987653321111110     11  1111111111            12478899


Q ss_pred             ecCCCcc--ceecccCCcceEEEEEeCCCCEEEeecCCCeEEEEECCCCeeeeeeecCCCCe------------------
Q 042146           86 DVPTATS--LKTLIGHTNYVFCINFNPQSNRIVSDTFNETIRIWDIKTGKCLKVLPAHSDPV------------------  145 (262)
Q Consensus        86 d~~~~~~--~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~v------------------  145 (262)
                      |+.+++.  +.....|...+..++|+|||++|+.++. +.|++||+.+++.......+...+                  
T Consensus        97 d~~~~~~~~l~~~~~~~~~~~~~~~SPdG~~la~~~~-~~i~~~~~~~g~~~~~~~~~~~~~~~~g~~~~v~~ee~~~~~  175 (723)
T 1xfd_A           97 KIPHGDPQSLDPPEVSNAKLQYAGWGPKGQQLIFIFE-NNIYYCAHVGKQAIRVVSTGKEGVIYNGLSDWLYEEEILKTH  175 (723)
T ss_dssp             ESSSCCCEECCCTTCCSCCCSBCCBCSSTTCEEEEET-TEEEEESSSSSCCEEEECCCBTTTEEEEECCHHHHHTTSSSS
T ss_pred             ECCCCceEeccCCccccccccccEECCCCCEEEEEEC-CeEEEEECCCCceEEEecCCCCCceECcccceeEEEEeccCc
Confidence            9988875  2223345556889999999999999885 799999999887766555444333                  


Q ss_pred             eeEEEccCCCEEEEEeCCC
Q 042146          146 TAIDFNRDGTMIVTSSYDG  164 (262)
Q Consensus       146 ~~~~~~~~~~~l~~~~~dg  164 (262)
                      .+++|+|||+.|++++.++
T Consensus       176 ~~~~~SpDg~~la~~~~~~  194 (723)
T 1xfd_A          176 IAHWWSPDGTRLAYAAIND  194 (723)
T ss_dssp             EEEEECTTSSEEEEEEEEC
T ss_pred             ceEEECCCCCEEEEEEECC
Confidence            7899999999999887553

>1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A*

Probab=99.82  E-value=1.4e-18  Score=154.22  Aligned_cols=226  Identities=14%  Similarity=0.058  Sum_probs=162.7

Q ss_pred             CCceeeec--c-cccceecccCcCceEEEEEccCCCeEEEecCCCeEEEeecCCCCCCCCCCCC------------CCcc
Q 042146            4 DRSLESFR--P-YTLTQTLNGHLRAVSYVKFSHDGRLLTSSSAEKTLLTYSLSSISNFDSTPPS------------PLQK   68 (262)
Q Consensus         4 d~~i~~~~--~-~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~------------~~~~   68 (262)
                      |++...|.  . ......+..|. .+...+|+|+|++|+.+ .++.|.+|+++...........            ....
T Consensus       223 dg~~~l~~~~~~g~~~~~l~~~~-~~~~~~~SpDG~~la~~-~~~~i~~~d~~~~~l~~l~~~~~~~~~~~~~~~~~v~~  300 (1045)
T 1k32_A          223 DGFGQIYSTDLDGKDLRKHTSFT-DYYPRHLNTDGRRILFS-KGGSIYIFNPDTEKIEKIEIGDLESPEDRIISIPSKFA  300 (1045)
T ss_dssp             TSSCEEEEEETTSCSCEECCCCC-SSCEEEEEESSSCEEEE-ETTEEEEECTTTCCEEECCCCCCCBCCSEEEECGGGGE
T ss_pred             cCceEEEEEeCCCCcceEecCCC-CcceeeEcCCCCEEEEE-eCCEEEEecCCceEeeeeccCcccccccccccccccce
Confidence            45444443  2 33455565555 46778999999999988 4899999998432211101000            0111


Q ss_pred             --cc-CCcccc--ccceeEEEEecCCCccceecccCCc-ceEEEEEeCCCCEEEeecCCCeEE-EEECCCCeeeeeeecC
Q 042146           69 --FT-GHEQGI--SDLATIRLWDVPTATSLKTLIGHTN-YVFCINFNPQSNRIVSDTFNETIR-IWDIKTGKCLKVLPAH  141 (262)
Q Consensus        69 --~~-~~~~~v--~~~~~i~v~d~~~~~~~~~~~~~~~-~v~~~~~~~~~~~l~~~~~dg~i~-vwd~~~~~~~~~~~~~  141 (262)
                        +. .....+  .....+.+|+...+... .+..|.. .+..++|+ +++.++.++.++.+. +||+.+++... +..|
T Consensus       301 ~~~S~pdG~~la~~~~~~i~~~~~~~~~~~-~~~~~~~~~~~~~~~s-dg~~l~~~s~~~~l~~~~d~~~~~~~~-l~~~  377 (1045)
T 1k32_A          301 EDFSPLDGDLIAFVSRGQAFIQDVSGTYVL-KVPEPLRIRYVRRGGD-TKVAFIHGTREGDFLGIYDYRTGKAEK-FEEN  377 (1045)
T ss_dssp             EEEEECGGGCEEEEETTEEEEECTTSSBEE-ECSCCSCEEEEEECSS-SEEEEEEEETTEEEEEEEETTTCCEEE-CCCC
T ss_pred             eeecCCCCCEEEEEEcCEEEEEcCCCCceE-EccCCCcceEEeeeEc-CCCeEEEEECCCceEEEEECCCCCceE-ecCC
Confidence              11 111111  11337889998776544 4556666 89999999 999999988888898 99998776544 3477


Q ss_pred             CCCeeeEEEccCCCEEEEEeCCCeEEEEeCCC--------------------CCccEEEEEcCCC----------eEEEE
Q 042146          142 SDPVTAIDFNRDGTMIVTSSYDGLYRILDAST--------------------PNGKFILVGTLDN----------TLRLW  191 (262)
Q Consensus       142 ~~~v~~~~~~~~~~~l~~~~~dg~i~~~d~~~--------------------~~~~~l~~~~~dg----------~i~i~  191 (262)
                      ...+..++|+|+|++|++++.++.|++||+.+                    |++++|++++.++          .|++|
T Consensus       378 ~~~~~~~~~SpDG~~la~~~~~~~v~~~d~~tg~~~~~~~~~~~~v~~~~~SpDG~~la~~~~~~~~~~~~~~~~~i~l~  457 (1045)
T 1k32_A          378 LGNVFAMGVDRNGKFAVVANDRFEIMTVDLETGKPTVIERSREAMITDFTISDNSRFIAYGFPLKHGETDGYVMQAIHVY  457 (1045)
T ss_dssp             CCSEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECSSSCCCCEEECTTSCEEEEEEEECSSTTCSCCEEEEEEE
T ss_pred             ccceeeeEECCCCCEEEEECCCCeEEEEECCCCceEEeccCCCCCccceEECCCCCeEEEEecCccccccCCCCCeEEEE
Confidence            88999999999999999999999999999865                    7899998887654          89999


Q ss_pred             ecCCCceeeEEeccCCceeEEEEEEecCCCeeEEccccceEEEEEcCCCCeEEEeeecCCCcEEEEee
Q 042146          192 NYSTRKILKTYSGYTNSKYCISSTFSVTNGKYIVSHRDPVISVASHPAKNIIASGALDNDRTMKIWTQ  259 (262)
Q Consensus       192 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~d~d~~i~iw~~  259 (262)
                      |+.+++ +..+..                      |...+..++|+|+|+.|+.++  .++..++|+.
T Consensus       458 d~~~g~-~~~l~~----------------------~~~~~~~~~~spdG~~l~~~s--~~~~~~~~~~  500 (1045)
T 1k32_A          458 DMEGRK-IFAATT----------------------ENSHDYAPAFDADSKNLYYLS--YRSLDPSPDR  500 (1045)
T ss_dssp             ETTTTE-EEECSC----------------------SSSBEEEEEECTTSCEEEEEE--SCCCCCEECS
T ss_pred             ECCCCc-EEEeeC----------------------CCcccCCceEcCCCCEEEEEe--cccCCcCcch
Confidence            999877 445544                      667788899999999999998  7777777764

>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum}

Probab=99.82  E-value=3.5e-18  Score=133.71  Aligned_cols=188  Identities=12%  Similarity=0.197  Sum_probs=127.6

Q ss_pred             ccCcCceEEEEEccCCCeEEEecC---CCeEEEeecCCCCCCCCCCCCCCccccCCccccccceeEEEEecCCCc--cce
Q 042146           20 NGHLRAVSYVKFSHDGRLLTSSSA---EKTLLTYSLSSISNFDSTPPSPLQKFTGHEQGISDLATIRLWDVPTAT--SLK   94 (262)
Q Consensus        20 ~~h~~~v~~~~~~~~~~~l~s~~~---d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~i~v~d~~~~~--~~~   94 (262)
                      ..+...+..++|+|+|+ |++++.   ++.|.+|+++                                   +++  .+.
T Consensus        36 ~~~~~~p~~~a~spdg~-l~~~~~~~~~~~v~~~~~~-----------------------------------~g~~~~~~   79 (347)
T 3hfq_A           36 LAATQNPTYLALSAKDC-LYSVDKEDDEGGIAAWQID-----------------------------------GQTAHKLN   79 (347)
T ss_dssp             EEECSCCCCEEECTTCE-EEEEEEETTEEEEEEEEEE-----------------------------------TTEEEEEE
T ss_pred             eeccCCcceEEEccCCe-EEEEEecCCCceEEEEEec-----------------------------------CCcEEEee
Confidence            34556778899999999 555543   5777777552                                   222  333


Q ss_pred             ecccCCcceEEEEEeCCCCEEEeec-CCCeEEEEECCC-C--eeeeeeecC---------CCCeeeEEEccCCCEEEEEe
Q 042146           95 TLIGHTNYVFCINFNPQSNRIVSDT-FNETIRIWDIKT-G--KCLKVLPAH---------SDPVTAIDFNRDGTMIVTSS  161 (262)
Q Consensus        95 ~~~~~~~~v~~~~~~~~~~~l~~~~-~dg~i~vwd~~~-~--~~~~~~~~~---------~~~v~~~~~~~~~~~l~~~~  161 (262)
                      .+..+...+..++|+|++++|++++ .++.|.+|++.. +  +.+..+...         ...+.+++|+|+++++++..
T Consensus        80 ~~~~~~~~p~~~a~spdg~~l~~~~~~~~~v~v~~~~~~g~~~~~~~~~~~~~~p~~~~~~~~~~~~~~spdg~l~v~~~  159 (347)
T 3hfq_A           80 TVVAPGTPPAYVAVDEARQLVYSANYHKGTAEVMKIAADGALTLTDTVQHSGHGPRPEQDGSHIHYTDLTPDNRLAVIDL  159 (347)
T ss_dssp             EEEEESCCCSEEEEETTTTEEEEEETTTTEEEEEEECTTSCEEEEEEEECCCCCSSTTCSSCCEEEEEECTTSCEEEEET
T ss_pred             eeecCCCCCEEEEECCCCCEEEEEeCCCCEEEEEEeCCCCCeeecceeecCCCCCCccccCCCceEEEECCCCcEEEEeC
Confidence            3344566788999999999888777 789999999962 2  233333211         12478899999999666666


Q ss_pred             CCCeEEEEeCCC------------------------CCccEEEE-EcCCCeEEEEecCC--Ccee--eEEeccCCceeEE
Q 042146          162 YDGLYRILDAST------------------------PNGKFILV-GTLDNTLRLWNYST--RKIL--KTYSGYTNSKYCI  212 (262)
Q Consensus       162 ~dg~i~~~d~~~------------------------~~~~~l~~-~~~dg~i~i~d~~~--~~~~--~~~~~~~~~~~~~  212 (262)
                      .++.|.+|++..                        |+++++++ +..++.|.+|++..  ++..  ..+.......   
T Consensus       160 ~~~~v~~~~~~~~g~~~~~~~~~~~~g~~p~~~~~spdg~~l~v~~~~~~~v~v~~~~~~~g~~~~~~~~~~~~~~~---  236 (347)
T 3hfq_A          160 GSDKVYVYNVSDAGQLSEQSVLTMEAGFGPRHLVFSPDGQYAFLAGELSSQIASLKYDTQTGAFTQLGIVKTIPADY---  236 (347)
T ss_dssp             TTTEEEEEEECTTSCEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEESSCTTC---
T ss_pred             CCCEEEEEEECCCCcEEEeeeEEcCCCCCCceEEECCCCCEEEEEeCCCCEEEEEEecCCCCceEEeeeeeecCCCC---
Confidence            789999999872                        67885555 56778999998874  4432  2222111000   


Q ss_pred             EEEEecCCCeeEEccccceEEEEEcCCCCeEEEeeecCCCcEEEEeec
Q 042146          213 SSTFSVTNGKYIVSHRDPVISVASHPAKNIIASGALDNDRTMKIWTQE  260 (262)
Q Consensus       213 ~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~d~d~~i~iw~~~  260 (262)
                                   .....+..++|+|+|++|++++. .++.|.+|+++
T Consensus       237 -------------~~~~~~~~i~~spdG~~l~v~~~-~~~~v~v~~~~  270 (347)
T 3hfq_A          237 -------------TAHNGAAAIRLSHDGHFLYVSNR-GYNTLAVFAVT  270 (347)
T ss_dssp             -------------CSCCEEEEEEECTTSCEEEEEEE-TTTEEEEEEEC
T ss_pred             -------------CCCCcceeEEECCCCCEEEEEeC-CCCEEEEEEEC
Confidence                         01245889999999998755442 58999999985

>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1

Probab=99.80  E-value=2.2e-16  Score=120.23  Aligned_cols=216  Identities=10%  Similarity=0.193  Sum_probs=151.2

Q ss_pred             ccCcCceEEEEEccCCCeEEEecCCCeEEEeecCCCCCCCCCC-----C--CCCc--cccCCccc--ccc---ceeEEEE
Q 042146           20 NGHLRAVSYVKFSHDGRLLTSSSAEKTLLTYSLSSISNFDSTP-----P--SPLQ--KFTGHEQG--ISD---LATIRLW   85 (262)
Q Consensus        20 ~~h~~~v~~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~-----~--~~~~--~~~~~~~~--v~~---~~~i~v~   85 (262)
                      .+|...+.+++++++++++++...++.|.+||.+.........     .  ....  .+......  +..   ...|.+|
T Consensus        26 ~g~~~~p~~v~~~~~g~l~v~~~~~~~i~~~d~~g~~~~~~~~~~~~~~~~~~p~~i~~~~~~g~l~v~~~~~~~~i~~~  105 (286)
T 1q7f_A           26 EGQFTEPSGVAVNAQNDIIVADTNNHRIQIFDKEGRFKFQFGECGKRDSQLLYPNRVAVVRNSGDIIVTERSPTHQIQIY  105 (286)
T ss_dssp             TTCBSCEEEEEECTTCCEEEEEGGGTEEEEECTTSCEEEEECCBSSSTTCBSSEEEEEEETTTTEEEEEECGGGCEEEEE
T ss_pred             CCccCCCceEEECCCCCEEEEECCCCEEEEECCCCcEEEEecccCCCcccccCceEEEEEcCCCeEEEEcCCCCCEEEEE
Confidence            4566789999999999988888889999999976421111000     0  0000  01011111  111   3478889


Q ss_pred             ecCCCccceecc-cCCcceEEEEEeCCCCEEEeecCCCeEEEEECCCCeeeeeee--cCCCCeeeEEEccCCCEEEEEeC
Q 042146           86 DVPTATSLKTLI-GHTNYVFCINFNPQSNRIVSDTFNETIRIWDIKTGKCLKVLP--AHSDPVTAIDFNRDGTMIVTSSY  162 (262)
Q Consensus        86 d~~~~~~~~~~~-~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~--~~~~~v~~~~~~~~~~~l~~~~~  162 (262)
                      | .+++.+..+. .+...+..++++|+++++++...++.|.+||.. ++.+..+.  .+...+..++++|+++++++...
T Consensus       106 d-~~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~-g~~~~~~~~~~~~~~p~~i~~~~~g~l~v~~~~  183 (286)
T 1q7f_A          106 N-QYGQFVRKFGATILQHPRGVTVDNKGRIIVVECKVMRVIIFDQN-GNVLHKFGCSKHLEFPNGVVVNDKQEIFISDNR  183 (286)
T ss_dssp             C-TTSCEEEEECTTTCSCEEEEEECTTSCEEEEETTTTEEEEECTT-SCEEEEEECTTTCSSEEEEEECSSSEEEEEEGG
T ss_pred             C-CCCcEEEEecCccCCCceEEEEeCCCCEEEEECCCCEEEEEcCC-CCEEEEeCCCCccCCcEEEEECCCCCEEEEECC
Confidence            8 5566655553 234578999999999988888888999999964 55555553  34456899999999998888788


Q ss_pred             CCeEEEEeCCC---------------------CCccEEEEEcCCC-eEEEEecCCCceeeEEeccCCceeEEEEEEecCC
Q 042146          163 DGLYRILDAST---------------------PNGKFILVGTLDN-TLRLWNYSTRKILKTYSGYTNSKYCISSTFSVTN  220 (262)
Q Consensus       163 dg~i~~~d~~~---------------------~~~~~l~~~~~dg-~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~  220 (262)
                      ++.|++||...                     ++++++++...++ .|.+||. +++.+..+..+.              
T Consensus       184 ~~~i~~~~~~g~~~~~~~~~g~~~~p~~i~~d~~G~l~v~~~~~~~~i~~~~~-~g~~~~~~~~~~--------------  248 (286)
T 1q7f_A          184 AHCVKVFNYEGQYLRQIGGEGITNYPIGVGINSNGEILIADNHNNFNLTIFTQ-DGQLISALESKV--------------  248 (286)
T ss_dssp             GTEEEEEETTCCEEEEESCTTTSCSEEEEEECTTCCEEEEECSSSCEEEEECT-TSCEEEEEEESS--------------
T ss_pred             CCEEEEEcCCCCEEEEEccCCccCCCcEEEECCCCCEEEEeCCCCEEEEEECC-CCCEEEEEcccC--------------
Confidence            99999999653                     5677777777775 8999995 466666665421              


Q ss_pred             CeeEEccccceEEEEEcCCCCeEEEeeecCCCcEEEEeecc
Q 042146          221 GKYIVSHRDPVISVASHPAKNIIASGALDNDRTMKIWTQEK  261 (262)
Q Consensus       221 ~~~~~~~~~~v~~~~~~p~~~~l~~~~~d~d~~i~iw~~~~  261 (262)
                            ....+.+++++|+++++++ +  .|+.|++|++..
T Consensus       249 ------~~~~~~~i~~~~~g~l~vs-~--~~~~v~v~~~~~  280 (286)
T 1q7f_A          249 ------KHAQCFDVALMDDGSVVLA-S--KDYRLYIYRYVQ  280 (286)
T ss_dssp             ------CCSCEEEEEEETTTEEEEE-E--TTTEEEEEECSC
T ss_pred             ------CCCcceeEEECCCCcEEEE-C--CCCeEEEEEccc
Confidence                  2234779999999987777 6  689999999854

>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1

Probab=99.79  E-value=1.8e-17  Score=129.12  Aligned_cols=141  Identities=13%  Similarity=0.175  Sum_probs=105.8

Q ss_pred             CCcceEEEEEeCCCCEEEeecCC-CeEEEEECC--CCe--eeeeeecCCCCeeeEEEccCCCEEEEEeC-CCeEEEEeC-
Q 042146           99 HTNYVFCINFNPQSNRIVSDTFN-ETIRIWDIK--TGK--CLKVLPAHSDPVTAIDFNRDGTMIVTSSY-DGLYRILDA-  171 (262)
Q Consensus        99 ~~~~v~~~~~~~~~~~l~~~~~d-g~i~vwd~~--~~~--~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-dg~i~~~d~-  171 (262)
                      +...+.+++|+|+++++++++.+ +.|.+|++.  +++  .+..+..+. .+..++|+|++++|++++. ++.|.+||+ 
T Consensus        36 ~~~~~~~~~~spdg~~l~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~s~dg~~l~~~~~~~~~i~~~d~~  114 (343)
T 1ri6_A           36 VPGQVQPMVVSPDKRYLYVGVRPEFRVLAYRIAPDDGALTFAAESALPG-SLTHISTDHQGQFVFVGSYNAGNVSVTRLE  114 (343)
T ss_dssp             CSSCCCCEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEECSS-CCSEEEECTTSSEEEEEETTTTEEEEEEEE
T ss_pred             cCCCCceEEECCCCCEEEEeecCCCeEEEEEecCCCCceeeccccccCC-CCcEEEEcCCCCEEEEEecCCCeEEEEECC
Confidence            55678889999999988887776 999999997  444  344454433 7899999999998877664 889999998 


Q ss_pred             --CC-------------------CCccEEEEEc-CCCeEEEEecCC-CceeeEE--eccCCceeEEEEEEecCCCeeEEc
Q 042146          172 --ST-------------------PNGKFILVGT-LDNTLRLWNYST-RKILKTY--SGYTNSKYCISSTFSVTNGKYIVS  226 (262)
Q Consensus       172 --~~-------------------~~~~~l~~~~-~dg~i~i~d~~~-~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~  226 (262)
                        ..                   ++++++++++ .++.|++||+.+ ++.....  ....                   .
T Consensus       115 ~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~-------------------~  175 (343)
T 1ri6_A          115 DGLPVGVVDVVEGLDGCHSANISPDNRTLWVPALKQDRICLFTVSDDGHLVAQDPAEVTT-------------------V  175 (343)
T ss_dssp             TTEEEEEEEEECCCTTBCCCEECTTSSEEEEEEGGGTEEEEEEECTTSCEEEEEEEEEEC-------------------S
T ss_pred             CCccccccccccCCCCceEEEECCCCCEEEEecCCCCEEEEEEecCCCceeeeccccccc-------------------C
Confidence              32                   7888777776 889999999987 5543322  1000                   0


Q ss_pred             cccceEEEEEcCCCCeEEEeeecCCCcEEEEeec
Q 042146          227 HRDPVISVASHPAKNIIASGALDNDRTMKIWTQE  260 (262)
Q Consensus       227 ~~~~v~~~~~~p~~~~l~~~~~d~d~~i~iw~~~  260 (262)
                      ....+..++|+|++++|++++. .++.|++|+++
T Consensus       176 ~~~~~~~~~~~pdg~~l~~~~~-~~~~i~~~~~~  208 (343)
T 1ri6_A          176 EGAGPRHMVFHPNEQYAYCVNE-LNSSVDVWELK  208 (343)
T ss_dssp             TTCCEEEEEECTTSSEEEEEET-TTTEEEEEESS
T ss_pred             CCCCcceEEECCCCCEEEEEeC-CCCEEEEEEec
Confidence            3346788999999997765542 58999999985

>3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A

Probab=99.79  E-value=1.2e-17  Score=139.59  Aligned_cols=220  Identities=9%  Similarity=0.071  Sum_probs=148.2

Q ss_pred             CCceeeec--ccccceecccCc-CceEEEEEccCCCeEEEecC---CCeEEEeecCC--CCC-CCCCCCCC--CccccCC
Q 042146            4 DRSLESFR--PYTLTQTLNGHL-RAVSYVKFSHDGRLLTSSSA---EKTLLTYSLSS--ISN-FDSTPPSP--LQKFTGH   72 (262)
Q Consensus         4 d~~i~~~~--~~~~~~~~~~h~-~~v~~~~~~~~~~~l~s~~~---d~~i~iw~~~~--~~~-~~~~~~~~--~~~~~~~   72 (262)
                      |+++..|.  ..+. +.+..|. ..+..++|+|| +.+++++.   +...++|.+..  ... ........  ...+...
T Consensus        43 ~g~~~lw~~~~g~~-~~lt~~~~~~~~~~~~spd-~~l~~~~~~~g~~~~~l~~~~~~~~g~~~~l~~~~~~~~~~~s~d  120 (582)
T 3o4h_A           43 EGSVNAYLYDGGET-VKLNREPINSVLDPHYGVG-RVILVRDVSKGAEQHALFKVNTSRPGEEQRLEAVKPMRILSGVDT  120 (582)
T ss_dssp             TTEEEEEEEETTEE-EECCSSCCSEECEECTTCS-EEEEEEECSTTSCCEEEEEEETTSTTCCEECTTSCSBEEEEEEEC
T ss_pred             CCceeEEEEcCCCc-EeeecccccccccccCCCC-eEEEEeccCCCCcceEEEEEeccCCCccccccCCCCceeeeeCCC
Confidence            56655554  3333 4444455 68999999999 77777664   45566665432  111 01111111  1111111


Q ss_pred             cccccc----ceeEEEEecCCCccceecccCCcceEEEEEeCCCCEEEeecCC----CeEEEEECCCCeeeeeeecCCCC
Q 042146           73 EQGISD----LATIRLWDVPTATSLKTLIGHTNYVFCINFNPQSNRIVSDTFN----ETIRIWDIKTGKCLKVLPAHSDP  144 (262)
Q Consensus        73 ~~~v~~----~~~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d----g~i~vwd~~~~~~~~~~~~~~~~  144 (262)
                      ...+..    ...+.+||+.+++.......+ .  .+++|+|||+++++++.+    +.|++||+.+++.. .+..|...
T Consensus       121 g~~~~~~s~~~~~~~l~d~~~g~~~~l~~~~-~--~~~~~spDG~~la~~~~~~~~~~~i~~~d~~~g~~~-~l~~~~~~  196 (582)
T 3o4h_A          121 GEAVVFTGATEDRVALYALDGGGLRELARLP-G--FGFVSDIRGDLIAGLGFFGGGRVSLFTSNLSSGGLR-VFDSGEGS  196 (582)
T ss_dssp             SSCEEEEEECSSCEEEEEEETTEEEEEEEES-S--CEEEEEEETTEEEEEEEEETTEEEEEEEETTTCCCE-EECCSSCE
T ss_pred             CCeEEEEecCCCCceEEEccCCcEEEeecCC-C--ceEEECCCCCEEEEEEEcCCCCeEEEEEcCCCCCce-EeecCCCc
Confidence            111111    114569999887655444333 2  789999999999988776    78999999888754 56678888


Q ss_pred             eeeEEEccCCCEEEEEeCCC--eEEEEeCCC---------------------------CCccEEEEEcCCCeEEEEecCC
Q 042146          145 VTAIDFNRDGTMIVTSSYDG--LYRILDAST---------------------------PNGKFILVGTLDNTLRLWNYST  195 (262)
Q Consensus       145 v~~~~~~~~~~~l~~~~~dg--~i~~~d~~~---------------------------~~~~~l~~~~~dg~i~i~d~~~  195 (262)
                      +..++|+|||+.|+++..++  .|++||+.+                           |++..+++++.++.+++|++  
T Consensus       197 ~~~~~~SpDG~~l~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~~~~~~~~g~~~l~~~--  274 (582)
T 3o4h_A          197 FSSASISPGMKVTAGLETAREARLVTVDPRDGSVEDLELPSKDFSSYRPTAITWLGYLPDGRLAVVARREGRSAVFID--  274 (582)
T ss_dssp             EEEEEECTTSCEEEEEECSSCEEEEEECTTTCCEEECCCSCSHHHHHCCSEEEEEEECTTSCEEEEEEETTEEEEEET--
T ss_pred             cccceECCCCCEEEEccCCCeeEEEEEcCCCCcEEEccCCCcChhhhhhccccceeEcCCCcEEEEEEcCCcEEEEEE--
Confidence            99999999999999888888  899999654                           57788888999999999998  


Q ss_pred             CceeeEEeccCCceeEEEEEEecCCCeeEEccccceEEEEEcCCCCeEEEeeecCCCc---EEEEee
Q 042146          196 RKILKTYSGYTNSKYCISSTFSVTNGKYIVSHRDPVISVASHPAKNIIASGALDNDRT---MKIWTQ  259 (262)
Q Consensus       196 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~d~d~~---i~iw~~  259 (262)
                      ++...   .                      ..+.+.+++|+ +++++++++  .+..   +.+|+.
T Consensus       275 g~~~~---~----------------------~~~~v~~~~~s-dg~~l~~~s--~~~~p~~l~~~d~  313 (582)
T 3o4h_A          275 GERVE---A----------------------PQGNHGRVVLW-RGKLVTSHT--SLSTPPRIVSLPS  313 (582)
T ss_dssp             TEEEC---C----------------------CSSEEEEEEEE-TTEEEEEEE--ETTEEEEEEEETT
T ss_pred             CCeec---c----------------------CCCceEEEEec-CCEEEEEEc--CCCCCCeEEEEcC
Confidence            65443   1                      34567899999 999888887  4433   555543

>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A*

Probab=99.78  E-value=2.1e-15  Score=117.23  Aligned_cols=227  Identities=14%  Similarity=0.144  Sum_probs=157.0

Q ss_pred             CcCceEEEEEccCCCeEEEecCCCeEEEeecCCCCCCCCCCCCCCccccCCccccccceeEEEEecCCCccceecc-cCC
Q 042146           22 HLRAVSYVKFSHDGRLLTSSSAEKTLLTYSLSSISNFDSTPPSPLQKFTGHEQGISDLATIRLWDVPTATSLKTLI-GHT  100 (262)
Q Consensus        22 h~~~v~~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~i~v~d~~~~~~~~~~~-~~~  100 (262)
                      -.+.+.+++++|+|+++++...++.+.+++.....           .+..+.........|.+||..+++.+..+. .+.
T Consensus        22 ~l~~v~~va~d~~G~l~v~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~   90 (329)
T 3fvz_A           22 LPGQVSGVALDSKNNLVIFHRGDHVWDGNSFDSKF-----------VYQQRGLGPIEEDTILVIDPNNAEILQSSGKNLF   90 (329)
T ss_dssp             CCSCEEEEEECTTCCEEEEECTTCCCCTTSBCTTS-----------CBSCGGGCSCCSCCEEEECTTTCCEEEEECTTTC
T ss_pred             ecCCceEEEECCCCCEEEEeCCCCeEEeeccCcce-----------eecccccccccCCcEEEEECCCCeEEeccCCCcc
Confidence            35679999999999999998888765554333211           111111111233479999998888766554 344


Q ss_pred             cceEEEEEeCCCCEEEeecCCCeEEEEECCCCe-eeeee---------ecCCCCeeeEEEcc-CCCEEEEEe-CCCeEEE
Q 042146          101 NYVFCINFNPQSNRIVSDTFNETIRIWDIKTGK-CLKVL---------PAHSDPVTAIDFNR-DGTMIVTSS-YDGLYRI  168 (262)
Q Consensus       101 ~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~-~~~~~---------~~~~~~v~~~~~~~-~~~~l~~~~-~dg~i~~  168 (262)
                      .....++++|+++++++...++.|++||..... .+..+         ..+......++++| ++.++++.+ .++.|++
T Consensus        91 ~~p~gia~d~~g~l~v~d~~~~~v~~~~~~g~~~~~~~~~~~~~~g~~~~~~~~P~~ia~~~~~g~lyv~d~~~~~~I~~  170 (329)
T 3fvz_A           91 YLPHGLSIDTDGNYWVTDVALHQVFKLDPHSKEGPLLILGRSMQPGSDQNHFCQPTDVAVEPSTGAVFVSDGYCNSRIVQ  170 (329)
T ss_dssp             SSEEEEEECTTSCEEEEETTTTEEEEECTTCSSCCSEEESBTTBCCCSTTCCSSEEEEEECTTTCCEEEEECSSCCEEEE
T ss_pred             CCceEEEECCCCCEEEEECCCCEEEEEeCCCCeEEEEEecccCCCCCCccccCCCcEEEEeCCCCeEEEEeCCCCCeEEE
Confidence            578999999999999998889999999976442 44444         23344688999999 788888876 6999999


Q ss_pred             EeCCC-----------------------------CC-ccEEEEEcCCCeEEEEecCCCceeeEEeccCCceeEEEEEEec
Q 042146          169 LDAST-----------------------------PN-GKFILVGTLDNTLRLWNYSTRKILKTYSGYTNSKYCISSTFSV  218 (262)
Q Consensus       169 ~d~~~-----------------------------~~-~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~  218 (262)
                      ||...                             ++ +.++++...++.|++||..+++.+..+.............+.+
T Consensus       171 ~~~~g~~~~~~~~~g~~~~~~~~~~~~p~gia~d~~~g~l~v~d~~~~~I~~~~~~~G~~~~~~~~~~~~~~~~~~~~~p  250 (329)
T 3fvz_A          171 FSPSGKFVTQWGEESSGSSPRPGQFSVPHSLALVPHLDQLCVADRENGRIQCFKTDTKEFVREIKHASFGRNVFAISYIP  250 (329)
T ss_dssp             ECTTSCEEEEECEECCSSSCCTTEESCEEEEEEETTTTEEEEEETTTTEEEEEETTTCCEEEEECCTTTTTCEEEEEEET
T ss_pred             EcCCCCEEEEeccCCCCCCCCCcccCCCcEEEEECCCCEEEEEECCCCEEEEEECCCCcEEEEEeccccCCCcceeeecC
Confidence            98442                             45 6777777888999999999888888875322111111111111


Q ss_pred             -------------------------CCCeeEE------ccccceEEEEEcCCCCeEEEeeecCCCcEEEEeecc
Q 042146          219 -------------------------TNGKYIV------SHRDPVISVASHPAKNIIASGALDNDRTMKIWTQEK  261 (262)
Q Consensus       219 -------------------------~~~~~~~------~~~~~v~~~~~~p~~~~l~~~~~d~d~~i~iw~~~~  261 (262)
                                               ..+.++.      ++...+..++++|+|.++++..  .++.|++|+++.
T Consensus       251 g~~~~~~g~~~v~~~~~~~v~~~~~~~g~~~~~~~~~~~~~~~p~~ia~~~dG~lyvad~--~~~~I~~~~~~~  322 (329)
T 3fvz_A          251 GFLFAVNGKPYFGDQEPVQGFVMNFSSGEIIDVFKPVRKHFDMPHDIVASEDGTVYIGDA--HTNTVWKFTLTE  322 (329)
T ss_dssp             TEEEEEECCCCTTCSCCCCEEEEETTTCCEEEEECCSSSCCSSEEEEEECTTSEEEEEES--SSCCEEEEEEEE
T ss_pred             CEEEEeCCCEEeccCCCcEEEEEEcCCCeEEEEEcCCCCccCCeeEEEECCCCCEEEEEC--CCCEEEEEeCCc
Confidence                                     1222221      2445689999999998777777  789999999864

>1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1

Probab=99.78  E-value=6.6e-17  Score=127.44  Aligned_cols=219  Identities=10%  Similarity=0.106  Sum_probs=135.3

Q ss_pred             CcCceEEEEEccCCCeEEEecCCCeEEEeecC-CCCCCCC----CCCCCC-ccccCCcc--cc--c--------------
Q 042146           22 HLRAVSYVKFSHDGRLLTSSSAEKTLLTYSLS-SISNFDS----TPPSPL-QKFTGHEQ--GI--S--------------   77 (262)
Q Consensus        22 h~~~v~~~~~~~~~~~l~s~~~d~~i~iw~~~-~~~~~~~----~~~~~~-~~~~~~~~--~v--~--------------   77 (262)
                      ....+..++|+|++++|++++.+ .|.+|++. .......    ....+. ..+.....  .+  .              
T Consensus        38 ~~~~~~~~a~spdg~~l~~~~~~-~v~~~~~~~~g~~~~~~~~~~~g~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~  116 (365)
T 1jof_A           38 QDEPISWMTFDHERKNIYGAAMK-KWSSFAVKSPTEIVHEASHPIGGHPRANDADTNTRAIFLLAAKQPPYAVYANPFYK  116 (365)
T ss_dssp             TTCCCSEEEECTTSSEEEEEEBT-EEEEEEEEETTEEEEEEEEECCSSGGGGCTTSCCEEEEEEECSSTTCCEEEEEESS
T ss_pred             CCCCCcEEEECCCCCEEEEEccc-eEEEEEECCCCCEEEeeEeecCCCCccEEECCCCCEEEEEEecCCcceeccceeec
Confidence            34468899999999999998887 99999986 3321100    001110 11111111  11  0              


Q ss_pred             cceeEEEEecCC-Cccceecc----cCCcceEEEEEeCCCCEEEeec-CCCeEEEEECC-CCeee--eeee--cCCCCee
Q 042146           78 DLATIRLWDVPT-ATSLKTLI----GHTNYVFCINFNPQSNRIVSDT-FNETIRIWDIK-TGKCL--KVLP--AHSDPVT  146 (262)
Q Consensus        78 ~~~~i~v~d~~~-~~~~~~~~----~~~~~v~~~~~~~~~~~l~~~~-~dg~i~vwd~~-~~~~~--~~~~--~~~~~v~  146 (262)
                      ..+.+.+|++.. ++....+.    .+...+.+++|+|+|++++++. .++.|.+||+. +++..  ..+.  .|...+.
T Consensus       117 ~~g~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~~~spdG~~l~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~~g~~p~  196 (365)
T 1jof_A          117 FAGYGNVFSVSETGKLEKNVQNYEYQENTGIHGMVFDPTETYLYSADLTANKLWTHRKLASGEVELVGSVDAPDPGDHPR  196 (365)
T ss_dssp             SCCEEEEEEECTTCCEEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCEEEEEEEECSSTTCCEE
T ss_pred             CCceEEEEccCCCCcCcceEeeEEeCCCCcceEEEECCCCCEEEEEcCCCCEEEEEEECCCCCEEEeeeEecCCCCCCCC
Confidence            234689999973 55433332    2456799999999999887765 46799999998 67543  2333  2356789


Q ss_pred             eEEEccCCCEEEEEeC-CCeEEEEeCCC---------------------------------------CCccEEEEEcCCC
Q 042146          147 AIDFNRDGTMIVTSSY-DGLYRILDAST---------------------------------------PNGKFILVGTLDN  186 (262)
Q Consensus       147 ~~~~~~~~~~l~~~~~-dg~i~~~d~~~---------------------------------------~~~~~l~~~~~dg  186 (262)
                      .++|+|+|+++++++. ++.|.+|++..                                       |++++|++++.+.
T Consensus       197 ~~~~spdg~~l~v~~~~~~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~spdG~~l~v~~~~~  276 (365)
T 1jof_A          197 WVAMHPTGNYLYALMEAGNRICEYVIDPATHMPVYTHHSFPLIPPGIPDRDPETGKGLYRADVCALTFSGKYMFASSRAN  276 (365)
T ss_dssp             EEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEEESSCTTCCCBCTTTSSBSEEEEEEEECTTSSEEEEEEEES
T ss_pred             EeEECCCCCEEEEEECCCCeEEEEEEeCCCCcEEEccceEEcCCCCcCCcccccccccccccEEEECCCCCEEEEECCCC
Confidence            9999999998887774 68888886532                                       2333333332211


Q ss_pred             ------eEEEEecC-CCceeeEEeccCCceeEEEEEEecCCCeeEEccccceEEEEEcC---CCCeEEEeeecCCCcEEE
Q 042146          187 ------TLRLWNYS-TRKILKTYSGYTNSKYCISSTFSVTNGKYIVSHRDPVISVASHP---AKNIIASGALDNDRTMKI  256 (262)
Q Consensus       187 ------~i~i~d~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p---~~~~l~~~~~d~d~~i~i  256 (262)
                            .|.+|++. +++......                   .+..+...+..++|+|   ++++|++++. .++.|++
T Consensus       277 ~~~~~~~i~v~~~~~~g~~~~~~~-------------------~~~~~~~~~~~~a~sp~~~dg~~l~v~~~-~~~~v~v  336 (365)
T 1jof_A          277 KFELQGYIAGFKLRDCGSIEKQLF-------------------LSPTPTSGGHSNAVSPCPWSDEWMAITDD-QEGWLEI  336 (365)
T ss_dssp             STTSCCEEEEEEECTTSCEEEEEE-------------------EEECSSCCTTCCCEEECTTCTTEEEEECS-SSCEEEE
T ss_pred             CCCCCCeEEEEEECCCCCEEEeee-------------------eeecCCCCcccceecCCCcCCCEEEEEEc-CCCeEEE
Confidence                  45555543 233221100                   0001334566789999   8999999873 2589999


Q ss_pred             Eeecc
Q 042146          257 WTQEK  261 (262)
Q Consensus       257 w~~~~  261 (262)
                      |+++.
T Consensus       337 ~~~~~  341 (365)
T 1jof_A          337 YRWKD  341 (365)
T ss_dssp             EEEET
T ss_pred             EEEch
Confidence            99864

>1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens}

Probab=99.78  E-value=2.1e-17  Score=141.40  Aligned_cols=233  Identities=12%  Similarity=0.118  Sum_probs=146.5

Q ss_pred             CCCceeeec--ccccceecccCcC---ceEEEEEccCCCeEEEecC---------CCeEEEeecCCCCC---CCCCCCCC
Q 042146            3 SDRSLESFR--PYTLTQTLNGHLR---AVSYVKFSHDGRLLTSSSA---------EKTLLTYSLSSISN---FDSTPPSP   65 (262)
Q Consensus         3 ~d~~i~~~~--~~~~~~~~~~h~~---~v~~~~~~~~~~~l~s~~~---------d~~i~iw~~~~~~~---~~~~~~~~   65 (262)
                      .|++|+.|+  ..+....+.+|..   .+.+++|||||++|++++.         ++.|++||+++...   ........
T Consensus        34 ~d~~i~~~~~~~g~~~~~~~~~~~~~~~~~~~~~SpDg~~la~~~~~~~~~~~s~~~~i~~~d~~~g~~~~~~~l~~~~~  113 (719)
T 1z68_A           34 ADNNIVLYNIETGQSYTILSNRTMKSVNASNYGLSPDRQFVYLESDYSKLWRYSYTATYYIYDLSNGEFVRGNELPRPIQ  113 (719)
T ss_dssp             TTSCEEEEESSSCCEEEEECHHHHHTTTCSEEEECTTSSEEEEEEEEEECSSSCEEEEEEEEETTTTEECCSSCCCSSBC
T ss_pred             CCCCEEEEEcCCCcEEEEEccccccccceeeEEECCCCCeEEEEecCceeEEeecceEEEEEECCCCccccceecCcccc
Confidence            477888876  3445555555544   4899999999999999876         78999999987544   22211111


Q ss_pred             CccccCCccccc--cceeEEEEecCCCccceec-ccCCcce-----------------EEEEEeCCCCEEEeecCCC---
Q 042146           66 LQKFTGHEQGIS--DLATIRLWDVPTATSLKTL-IGHTNYV-----------------FCINFNPQSNRIVSDTFNE---  122 (262)
Q Consensus        66 ~~~~~~~~~~v~--~~~~i~v~d~~~~~~~~~~-~~~~~~v-----------------~~~~~~~~~~~l~~~~~dg---  122 (262)
                      ...+......+.  ....|++|++.+++..... .++...|                 .+++|+|||++|++++.|.   
T Consensus       114 ~~~~SPDG~~la~~~~~~i~~~~~~~g~~~~l~~~~~~~~v~~g~~~~v~~ee~~~~~~~~~wSPDG~~la~~~~d~~~~  193 (719)
T 1z68_A          114 YLCWSPVGSKLAYVYQNNIYLKQRPGDPPFQITFNGRENKIFNGIPDWVYEEEMLATKYALWWSPNGKFLAYAEFNDTDI  193 (719)
T ss_dssp             CEEECSSTTCEEEEETTEEEEESSTTSCCEECCCCCBTTTEEESSCCHHHHHHTTCSSCCEEECTTSSEEEEEEEECTTS
T ss_pred             cceECCCCCEEEEEECCeEEEEeCCCCCcEEEecCCCcCCeEcccccceeeeecccCcccEEECCCCCEEEEEEECCCCC
Confidence            112222222221  2338999999887765432 2222222                 4899999999999887552   


Q ss_pred             -------------------------------eEEEEECCCCeee--------eeeecCCCCeeeEEEccCCCEEEEEeCC
Q 042146          123 -------------------------------TIRIWDIKTGKCL--------KVLPAHSDPVTAIDFNRDGTMIVTSSYD  163 (262)
Q Consensus       123 -------------------------------~i~vwd~~~~~~~--------~~~~~~~~~v~~~~~~~~~~~l~~~~~d  163 (262)
                                                     .|++||+.+++..        ..+..|...+..++|+||++++++....
T Consensus       194 ~~~~~~~~~~~~~~~~~~~~yp~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SpD~~~~~~~~~~  273 (719)
T 1z68_A          194 PVIAYSYYGDEQYPRTINIPYPKAGAKNPVVRIFIIDTTYPAYVGPQEVPVPAMIASSDYYFSWLTWVTDERVCLQWLKR  273 (719)
T ss_dssp             CEEEEEECCSSSSCEEEEEECCBTTSCCCEEEEEEEESSCHHHHCCEECCCCHHHHTSCEEEEEEEESSSSEEEEEEEES
T ss_pred             ceEEeeccCCCCCccceeecCCCCCCCCCeeEEEEEECCCCCccceeEccCCccCCCCcceEEEeEEeCCCeEEEEEecc
Confidence                                           7889999887642        1233577789999999998777764432


Q ss_pred             ----CeEEEEe----CCC-----------------------------CCccEEEE--EcCCC--eEEEEecCCCceeeEE
Q 042146          164 ----GLYRILD----AST-----------------------------PNGKFILV--GTLDN--TLRLWNYSTRKILKTY  202 (262)
Q Consensus       164 ----g~i~~~d----~~~-----------------------------~~~~~l~~--~~~dg--~i~i~d~~~~~~~~~~  202 (262)
                          ..|.+||    +.+                             |+++.++.  +..+|  .|.+||+.+++ ...+
T Consensus       274 ~~~~~~l~~~d~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~g~~~l~~~~~~~~~-~~~l  352 (719)
T 1z68_A          274 VQNVSVLSICDFREDWQTWDCPKTQEHIEESRTGWAGGFFVSTPVFSYDAISYYKIFSDKDGYKHIHYIKDTVEN-AIQI  352 (719)
T ss_dssp             STTEEEEEEEEECSSSSSEECCGGGEEEEECSSSCSSSSSCCCCEECTTSSCEEEEEECTTSCEEEEEESSCSTT-CEEC
T ss_pred             ccCeEEEEEEcccCCCCCCceEEEEecccccCCceEccccCCccEECCCCCeEEEEEEccCCceEEEEEECCCCc-eEec
Confidence                2488888    322                             34443332  33344  45566665554 2233


Q ss_pred             eccCCceeEEEEEEecCCCeeEEccccceEEEEEcCCCCeEEEeeecC----CCcEEEEeec
Q 042146          203 SGYTNSKYCISSTFSVTNGKYIVSHRDPVISVASHPAKNIIASGALDN----DRTMKIWTQE  260 (262)
Q Consensus       203 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~d~----d~~i~iw~~~  260 (262)
                      ..                      +...+..+.++ +++.|+..+. .    ++.+++|.++
T Consensus       353 t~----------------------~~~~v~~~~~~-d~~~i~~~~~-~~~~~~~~~~l~~~~  390 (719)
T 1z68_A          353 TS----------------------GKWEAINIFRV-TQDSLFYSSN-EFEEYPGRRNIYRIS  390 (719)
T ss_dssp             SC----------------------SSSCEEEEEEE-CSSEEEEEES-CGGGCTTCBEEEEEE
T ss_pred             cc----------------------CceEEEEEEEE-eCCEEEEEEe-cCCCCCceEEEEEEe
Confidence            22                      44456677777 7776666651 2    4889999875

>1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B*

Probab=99.77  E-value=3.5e-17  Score=127.14  Aligned_cols=198  Identities=13%  Similarity=0.118  Sum_probs=136.8

Q ss_pred             CeEEEecCCCeEEEeecCCCCCCCC---CC---CCCCccccCCcccc--c--cceeEEEEecCCCccceeccc-C----C
Q 042146           36 RLLTSSSAEKTLLTYSLSSISNFDS---TP---PSPLQKFTGHEQGI--S--DLATIRLWDVPTATSLKTLIG-H----T  100 (262)
Q Consensus        36 ~~l~s~~~d~~i~iw~~~~~~~~~~---~~---~~~~~~~~~~~~~v--~--~~~~i~v~d~~~~~~~~~~~~-~----~  100 (262)
                      ++|++++.++.|.+||+.+.+....   ..   ......+......+  .  ....|.+||+.+++.+..+.. +    .
T Consensus         2 ~~~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~   81 (337)
T 1pby_B            2 DYILAPARPDKLVVIDTEKMAVDKVITIADAGPTPMVPMVAPGGRIAYATVNKSESLVKIDLVTGETLGRIDLSTPEERV   81 (337)
T ss_dssp             EEEEEEETTTEEEEEETTTTEEEEEEECTTCTTCCCCEEECTTSSEEEEEETTTTEEEEEETTTCCEEEEEECCBTTEEE
T ss_pred             cEEEEcCCCCeEEEEECCCCcEEEEEEcCCCCCCccceEEcCCCCEEEEEeCCCCeEEEEECCCCCeEeeEEcCCccccc
Confidence            4789999999999999876432211   11   01111121111111  1  123899999999887765542 1    2


Q ss_pred             cceEEEEEeCCCCEEEeec------------CCCeEEEEECCCCeeeeeeecCCCCeeeEEEccCCCEEEEEeCCCeEEE
Q 042146          101 NYVFCINFNPQSNRIVSDT------------FNETIRIWDIKTGKCLKVLPAHSDPVTAIDFNRDGTMIVTSSYDGLYRI  168 (262)
Q Consensus       101 ~~v~~~~~~~~~~~l~~~~------------~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~  168 (262)
                      ..+..++|+|++++++++.            .++.|.+||+.+++.+..+.. ...+.+++|+|++++|+++  ++.|.+
T Consensus        82 ~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~-~~~~~~~~~s~dg~~l~~~--~~~i~~  158 (337)
T 1pby_B           82 KSLFGAALSPDGKTLAIYESPVRLELTHFEVQPTRVALYDAETLSRRKAFEA-PRQITMLAWARDGSKLYGL--GRDLHV  158 (337)
T ss_dssp             ECTTCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEETTTTEEEEEEEC-CSSCCCEEECTTSSCEEEE--SSSEEE
T ss_pred             ccccceEECCCCCEEEEEecccccccccccccCceEEEEECCCCcEEEEEeC-CCCcceeEECCCCCEEEEe--CCeEEE
Confidence            2577899999999988885            579999999999888877764 5567899999999988888  688999


Q ss_pred             EeCCC-------------------CCccEEEEEcCC-C-----------------------eEEEEecCCCceeeEEecc
Q 042146          169 LDAST-------------------PNGKFILVGTLD-N-----------------------TLRLWNYSTRKILKTYSGY  205 (262)
Q Consensus       169 ~d~~~-------------------~~~~~l~~~~~d-g-----------------------~i~i~d~~~~~~~~~~~~~  205 (262)
                      ||+.+                   +++..++..+.. +                       .|.+||+.+++.. .+.. 
T Consensus       159 ~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~-~~~~-  236 (337)
T 1pby_B          159 MDPEAGTLVEDKPIQSWEAETYAQPDVLAVWNQHESSGVMATPFYTARKDIDPADPTAYRTGLLTMDLETGEMA-MREV-  236 (337)
T ss_dssp             EETTTTEEEEEECSTTTTTTTBCCCBCCCCCCCCTTTTEEEEEEEEEBTTSCTTSGGGEEEEEEEEETTTCCEE-EEEE-
T ss_pred             EECCCCcEeeeeeccccCCCceeCCCccEEeeeccCCCceeeeeeccccccccccccccccceEEEeCCCCCce-Eeec-
Confidence            99875                   333433333222 2                       4678888887765 3221 


Q ss_pred             CCceeEEEEEEecCCCeeEEccccceEEEEEcCCCCeEEEeeecCCCcEEEEeecc
Q 042146          206 TNSKYCISSTFSVTNGKYIVSHRDPVISVASHPAKNIIASGALDNDRTMKIWTQEK  261 (262)
Q Consensus       206 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~d~d~~i~iw~~~~  261 (262)
                                         ..+...+.+++|+|++++++++.    +.|++||++.
T Consensus       237 -------------------~~~~~~~~~~~~s~dg~~l~~~~----~~v~~~d~~~  269 (337)
T 1pby_B          237 -------------------RIMDVFYFSTAVNPAKTRAFGAY----NVLESFDLEK  269 (337)
T ss_dssp             -------------------EECSSCEEEEEECTTSSEEEEEE----SEEEEEETTT
T ss_pred             -------------------CCCCCceeeEEECCCCCEEEEeC----CeEEEEECCC
Confidence                               01556788999999999998873    7899999753

>3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp}

Probab=99.76  E-value=3.5e-17  Score=129.83  Aligned_cols=239  Identities=13%  Similarity=0.070  Sum_probs=145.6

Q ss_pred             eeeec--ccccceecccCcCceEEEEEccCCCeEEEecCCCeEEEeecCCCCCCCCCC--CCCC--ccc--cCCccc---
Q 042146            7 LESFR--PYTLTQTLNGHLRAVSYVKFSHDGRLLTSSSAEKTLLTYSLSSISNFDSTP--PSPL--QKF--TGHEQG---   75 (262)
Q Consensus         7 i~~~~--~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~--~~~~--~~~--~~~~~~---   75 (262)
                      |+.++  ..+..+...+|...+....|+||++.|+.++.++.|++||+.+........  ....  ..+  ......   
T Consensus        62 l~~~d~~~g~~~~lt~~~~~~~~~~~~spdg~~l~~~~~~~~l~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~dg~~l~~  141 (388)
T 3pe7_A           62 YYLLDLNTQVATQLTEGRGDNTFGGFLSPDDDALFYVKDGRNLMRVDLATLEENVVYQVPAEWVGYGTWVANSDCTKLVG  141 (388)
T ss_dssp             EEEEETTTCEEEECCCSSCBCSSSCEECTTSSEEEEEETTTEEEEEETTTCCEEEEEECCTTEEEEEEEEECTTSSEEEE
T ss_pred             EEEEeCCCCceEEeeeCCCCCccceEEcCCCCEEEEEeCCCeEEEEECCCCcceeeeechhhcccccceeECCCCCeecc
Confidence            55554  344555556666666678899999999999999999999987643211100  0000  000  000000   


Q ss_pred             ----------------------cccceeEEEEecCCCccceecccCCcceEEEEEeC-CCCEEEeecCC------CeEEE
Q 042146           76 ----------------------ISDLATIRLWDVPTATSLKTLIGHTNYVFCINFNP-QSNRIVSDTFN------ETIRI  126 (262)
Q Consensus        76 ----------------------v~~~~~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~d------g~i~v  126 (262)
                                            ......|.+||+.+++.. .+..+...+..++|+| +++.|+....+      ..|.+
T Consensus       142 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~g~~~-~l~~~~~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~  220 (388)
T 3pe7_A          142 IEIRREDWVPLTDWKKFHEFYFTKPCCRLMRVDLKTGEST-VILQENQWLGHPIYRPYDDSTVAFCHEGPHDLVDARMWL  220 (388)
T ss_dssp             EEEEGGGCCCCCSHHHHHHHGGGCCCEEEEEEETTTCCEE-EEEEESSCEEEEEEETTEEEEEEEEECSCTTTSSCSEEE
T ss_pred             ccccCcccccccccchhhhhhccCCcceEEEEECCCCceE-EeecCCccccccEECCCCCCEEEEEEecCCCCCcceEEE
Confidence                                  011247999999887643 4445667789999999 99988776643      37888


Q ss_pred             EECCCCeeeeeeecCC--CCeeeEEEccCCCEEEEEeC-CC----eEEEEeCCC-------------------------C
Q 042146          127 WDIKTGKCLKVLPAHS--DPVTAIDFNRDGTMIVTSSY-DG----LYRILDAST-------------------------P  174 (262)
Q Consensus       127 wd~~~~~~~~~~~~~~--~~v~~~~~~~~~~~l~~~~~-dg----~i~~~d~~~-------------------------~  174 (262)
                      +|+..++. ..+..+.  ..+...+|+|+|+.|+..+. ++    .|.+||+.+                         |
T Consensus       221 ~d~~~~~~-~~l~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~g~~~~l~~~~~~~~~~~~~~~~~~sp  299 (388)
T 3pe7_A          221 INEDGTNM-RKVKTHAEGESCTHEFWVPDGSALVYVSYLKGSPDRFIYSADPETLENRQLTSMPACSHLMSNYDGSLMVG  299 (388)
T ss_dssp             EETTSCCC-EESCCCCTTEEEEEEEECTTSSCEEEEEEETTCCCEEEEEECTTTCCEEEEEEECCEEEEEECTTSSEEEE
T ss_pred             EeCCCCce-EEeeeCCCCcccccceECCCCCEEEEEecCCCCCcceEEEEecCCCceEEEEcCCCceeeeecCCCCeEcc
Confidence            88876544 3333343  25788999999997755443 22    399999865                         3


Q ss_pred             CccEEEEE---------cCCCeEEEEecCCCceeeEEeccCCceeEEEEEEecCCCeeEEccccceEEEEEcCCCCeEEE
Q 042146          175 NGKFILVG---------TLDNTLRLWNYSTRKILKTYSGYTNSKYCISSTFSVTNGKYIVSHRDPVISVASHPAKNIIAS  245 (262)
Q Consensus       175 ~~~~l~~~---------~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~  245 (262)
                      +++.|+..         ..+..|++||+.+++.. .+..+.....           .+.......+..++|+|+|+.|+.
T Consensus       300 dg~~l~~~~~~~~~~~~~~~~~i~~~d~~~~~~~-~l~~~~~~~~-----------~~~~~~~~~~~~~~~spDg~~l~~  367 (388)
T 3pe7_A          300 DGSDAPVDVQDDSGYKIENDPFLYVFNMKNGTQH-RVARHDTSWK-----------VFEGDRQVTHPHPSFTPDDKQILF  367 (388)
T ss_dssp             EECCC------------CCCCEEEEEETTTTEEE-EEEECCCCCC-----------CBTTBSSTTCCCCEECTTSSEEEE
T ss_pred             CCCcceeEeeeccccccCCCCEEEEEeccCCceE-EeccccCccc-----------ccccccccCCCCccCCCCCCEEEE
Confidence            33444432         34568888998876653 3332110000           000000114778899999998887


Q ss_pred             eeecCCCcEEEEeec
Q 042146          246 GALDNDRTMKIWTQE  260 (262)
Q Consensus       246 ~~~d~d~~i~iw~~~  260 (262)
                      ++. .+|...||.++
T Consensus       368 ~s~-~~g~~~l~~~~  381 (388)
T 3pe7_A          368 TSD-VHGKPALYLAT  381 (388)
T ss_dssp             EEC-TTSSCEEEEEE
T ss_pred             Eec-CCCceeEEEEE
Confidence            663 57888888764

>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B*

Probab=99.74  E-value=3e-16  Score=122.52  Aligned_cols=140  Identities=11%  Similarity=0.051  Sum_probs=105.3

Q ss_pred             EEEEccCCCeEEEecCCCeEEEeecCCCCCCCCCCCCCCccccCCccccccceeEEEEecCCCccceecccCC-cceEEE
Q 042146           28 YVKFSHDGRLLTSSSAEKTLLTYSLSSISNFDSTPPSPLQKFTGHEQGISDLATIRLWDVPTATSLKTLIGHT-NYVFCI  106 (262)
Q Consensus        28 ~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~i~v~d~~~~~~~~~~~~~~-~~v~~~  106 (262)
                      .+++++++.++++++.++.|.+||+.                                   +++.+..+..+. ..+..+
T Consensus         4 g~~~~~~~~~~v~~~~~~~v~~~d~~-----------------------------------~~~~~~~~~~~~~~~~~~~   48 (349)
T 1jmx_B            4 GPALKAGHEYMIVTNYPNNLHVVDVA-----------------------------------SDTVYKSCVMPDKFGPGTA   48 (349)
T ss_dssp             CCCCCTTCEEEEEEETTTEEEEEETT-----------------------------------TTEEEEEEECSSCCSSCEE
T ss_pred             cccccCCCEEEEEeCCCCeEEEEECC-----------------------------------CCcEEEEEecCCCCCCcee
Confidence            45678889999999999998888654                                   344444433222 246789


Q ss_pred             EEeCCCCEE-EeecCCCeEEEEECCCCeeeeeeecCC------CCeeeEEEccCCCEEEEEeCC------------CeEE
Q 042146          107 NFNPQSNRI-VSDTFNETIRIWDIKTGKCLKVLPAHS------DPVTAIDFNRDGTMIVTSSYD------------GLYR  167 (262)
Q Consensus       107 ~~~~~~~~l-~~~~~dg~i~vwd~~~~~~~~~~~~~~------~~v~~~~~~~~~~~l~~~~~d------------g~i~  167 (262)
                      +|+|+++++ +++..++.|.+||+.+++.+..+..+.      ..+..++|+|+|+++++++.+            +.|.
T Consensus        49 ~~s~dg~~~~v~~~~~~~i~~~d~~t~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~i~  128 (349)
T 1jmx_B           49 MMAPDNRTAYVLNNHYGDIYGIDLDTCKNTFHANLSSVPGEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVKPPRLE  128 (349)
T ss_dssp             EECTTSSEEEEEETTTTEEEEEETTTTEEEEEEESCCSTTEEEECSSCEEECTTSSEEEEEEEEEEECSSCEEECCCEEE
T ss_pred             EECCCCCEEEEEeCCCCcEEEEeCCCCcEEEEEEcccccccccccccceEECCCCCEEEEEcccccccccccccCCCeEE
Confidence            999999865 456678999999999998877765432      237899999999999998865            8999


Q ss_pred             EEeCCC----------------------CCccEEEEEcCCCeEEEEecCCCceeeEEecc
Q 042146          168 ILDAST----------------------PNGKFILVGTLDNTLRLWNYSTRKILKTYSGY  205 (262)
Q Consensus       168 ~~d~~~----------------------~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~  205 (262)
                      +||+.+                      ++++ +++++.  .|++||+.+++.+..+...
T Consensus       129 ~~d~~~~~~~~~~~~~~~~~~~~~~~~s~dg~-l~~~~~--~i~~~d~~~~~~~~~~~~~  185 (349)
T 1jmx_B          129 VFSTADGLEAKPVRTFPMPRQVYLMRAADDGS-LYVAGP--DIYKMDVKTGKYTVALPLR  185 (349)
T ss_dssp             EEEGGGGGGBCCSEEEECCSSCCCEEECTTSC-EEEESS--SEEEECTTTCCEEEEECST
T ss_pred             EEECCCccccceeeeccCCCcccceeECCCCc-EEEccC--cEEEEeCCCCceecccccc
Confidence            999754                      6777 555543  4999999999888777543

>3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp}

Probab=99.74  E-value=3.9e-16  Score=123.80  Aligned_cols=194  Identities=15%  Similarity=0.048  Sum_probs=133.4

Q ss_pred             ccccceecccCcCceEE-----EEEccCCCeEEEecC-CCeEEEeecCCCCCCCCCCCCCCccccCCccccccceeEEEE
Q 042146           12 PYTLTQTLNGHLRAVSY-----VKFSHDGRLLTSSSA-EKTLLTYSLSSISNFDSTPPSPLQKFTGHEQGISDLATIRLW   85 (262)
Q Consensus        12 ~~~~~~~~~~h~~~v~~-----~~~~~~~~~l~s~~~-d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~i~v~   85 (262)
                      .......+..|......     .+|+|||++|+.++. ++...||                                 +|
T Consensus        19 ~g~~~~~lt~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~g~~~l~---------------------------------~~   65 (388)
T 3pe7_A           19 TGAQVTRLTPPDVTCHRNYFYQKCFTRDGSKLLFGGAFDGPWNYY---------------------------------LL   65 (388)
T ss_dssp             TCCEEEECSCTTSCEECCCTTSCCBCTTSCEEEEEECTTSSCEEE---------------------------------EE
T ss_pred             CCcceEEecCCcccccchhhcCccCCCCCCEEEEEEcCCCCceEE---------------------------------EE
Confidence            34456677777766666     789999999998887 6643333                                 55


Q ss_pred             ecCCCccceecccCCcceEEEEEeCCCCEEEeecCCCeEEEEECCCCeeeeeeecCCCCeeeEE--EccCCCEEEEE---
Q 042146           86 DVPTATSLKTLIGHTNYVFCINFNPQSNRIVSDTFNETIRIWDIKTGKCLKVLPAHSDPVTAID--FNRDGTMIVTS---  160 (262)
Q Consensus        86 d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~--~~~~~~~l~~~---  160 (262)
                      |+.+++.......+...+..+.|+|+++.|+.++.++.|++||+.+++.......+...+....  ++|++++++..   
T Consensus        66 d~~~g~~~~lt~~~~~~~~~~~~spdg~~l~~~~~~~~l~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~dg~~l~~~~~~  145 (388)
T 3pe7_A           66 DLNTQVATQLTEGRGDNTFGGFLSPDDDALFYVKDGRNLMRVDLATLEENVVYQVPAEWVGYGTWVANSDCTKLVGIEIR  145 (388)
T ss_dssp             ETTTCEEEECCCSSCBCSSSCEECTTSSEEEEEETTTEEEEEETTTCCEEEEEECCTTEEEEEEEEECTTSSEEEEEEEE
T ss_pred             eCCCCceEEeeeCCCCCccceEEcCCCCEEEEEeCCCeEEEEECCCCcceeeeechhhcccccceeECCCCCeecccccc
Confidence            6666666555555555555678999999999999899999999999887766665655554443  48899888743   


Q ss_pred             -------------------eCCCeEEEEeCCC-------------------C-CccEEEEEcCC------CeEEEEecCC
Q 042146          161 -------------------SYDGLYRILDAST-------------------P-NGKFILVGTLD------NTLRLWNYST  195 (262)
Q Consensus       161 -------------------~~dg~i~~~d~~~-------------------~-~~~~l~~~~~d------g~i~i~d~~~  195 (262)
                                         ..+..|.+||+.+                   | +++.|+....+      ..|.++|+..
T Consensus       146 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~g~~~~l~~~~~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~  225 (388)
T 3pe7_A          146 REDWVPLTDWKKFHEFYFTKPCCRLMRVDLKTGESTVILQENQWLGHPIYRPYDDSTVAFCHEGPHDLVDARMWLINEDG  225 (388)
T ss_dssp             GGGCCCCCSHHHHHHHGGGCCCEEEEEEETTTCCEEEEEEESSCEEEEEEETTEEEEEEEEECSCTTTSSCSEEEEETTS
T ss_pred             CcccccccccchhhhhhccCCcceEEEEECCCCceEEeecCCccccccEECCCCCCEEEEEEecCCCCCcceEEEEeCCC
Confidence                               2446788999775                   6 77777666543      2677777654


Q ss_pred             CceeeEEeccCCceeEEEEEEecCCCeeEEccc--cceEEEEEcCCCCeEEEeeecCCC---cEEEEeecc
Q 042146          196 RKILKTYSGYTNSKYCISSTFSVTNGKYIVSHR--DPVISVASHPAKNIIASGALDNDR---TMKIWTQEK  261 (262)
Q Consensus       196 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~v~~~~~~p~~~~l~~~~~d~d~---~i~iw~~~~  261 (262)
                      ++.. .+..                      +.  ..+..++|+|+|+.|+..+.+.++   .|++|++..
T Consensus       226 ~~~~-~l~~----------------------~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~  273 (388)
T 3pe7_A          226 TNMR-KVKT----------------------HAEGESCTHEFWVPDGSALVYVSYLKGSPDRFIYSADPET  273 (388)
T ss_dssp             CCCE-ESCC----------------------CCTTEEEEEEEECTTSSCEEEEEEETTCCCEEEEEECTTT
T ss_pred             CceE-Eeee----------------------CCCCcccccceECCCCCEEEEEecCCCCCcceEEEEecCC
Confidence            4332 2222                      22  357788999999988765532122   399998753

>1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens}

Probab=99.73  E-value=2.5e-17  Score=140.87  Aligned_cols=177  Identities=13%  Similarity=0.176  Sum_probs=121.4

Q ss_pred             EEEEccCCCeEEEecCCCeEEEeecCCCCCCCCCCCCCCccccCCccccccceeEEEEecCCCccceecccCCc---ceE
Q 042146           28 YVKFSHDGRLLTSSSAEKTLLTYSLSSISNFDSTPPSPLQKFTGHEQGISDLATIRLWDVPTATSLKTLIGHTN---YVF  104 (262)
Q Consensus        28 ~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~i~v~d~~~~~~~~~~~~~~~---~v~  104 (262)
                      +++|+|+++++++ +.|+.|++||+.                                   +++....+..+..   .+.
T Consensus        20 ~~~~s~dg~~~~~-~~d~~i~~~~~~-----------------------------------~g~~~~~~~~~~~~~~~~~   63 (719)
T 1z68_A           20 FPNWISGQEYLHQ-SADNNIVLYNIE-----------------------------------TGQSYTILSNRTMKSVNAS   63 (719)
T ss_dssp             CCEESSSSEEEEE-CTTSCEEEEESS-----------------------------------SCCEEEEECHHHHHTTTCS
T ss_pred             ccEECCCCeEEEE-cCCCCEEEEEcC-----------------------------------CCcEEEEEcccccccccee
Confidence            7899999975555 468888888553                                   4444444433332   388


Q ss_pred             EEEEeCCCCEEEeecC---------CCeEEEEECCCCeeeeeeecCCCCeeeEEEccCCCEEEEEeCCCeEEEEeCCC--
Q 042146          105 CINFNPQSNRIVSDTF---------NETIRIWDIKTGKCLKVLPAHSDPVTAIDFNRDGTMIVTSSYDGLYRILDAST--  173 (262)
Q Consensus       105 ~~~~~~~~~~l~~~~~---------dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~d~~~--  173 (262)
                      +++|+|||++|++++.         ++.|++||+.+++.+.... ....+..++|||||+.|+.+. ++.|++||+..  
T Consensus        64 ~~~~SpDg~~la~~~~~~~~~~~s~~~~i~~~d~~~g~~~~~~~-l~~~~~~~~~SPDG~~la~~~-~~~i~~~~~~~g~  141 (719)
T 1z68_A           64 NYGLSPDRQFVYLESDYSKLWRYSYTATYYIYDLSNGEFVRGNE-LPRPIQYLCWSPVGSKLAYVY-QNNIYLKQRPGDP  141 (719)
T ss_dssp             EEEECTTSSEEEEEEEEEECSSSCEEEEEEEEETTTTEECCSSC-CCSSBCCEEECSSTTCEEEEE-TTEEEEESSTTSC
T ss_pred             eEEECCCCCeEEEEecCceeEEeecceEEEEEECCCCcccccee-cCcccccceECCCCCEEEEEE-CCeEEEEeCCCCC
Confidence            9999999999998876         6899999999887632111 135689999999999999886 78999998731  


Q ss_pred             ------------------------------------CCccEEEEEcCCC-------------------------------
Q 042146          174 ------------------------------------PNGKFILVGTLDN-------------------------------  186 (262)
Q Consensus       174 ------------------------------------~~~~~l~~~~~dg-------------------------------  186 (262)
                                                          |||++|+.++.|.                               
T Consensus       142 ~~~l~~~~~~~~v~~g~~~~v~~ee~~~~~~~~~wSPDG~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~~yp~~g~~~  221 (719)
T 1z68_A          142 PFQITFNGRENKIFNGIPDWVYEEEMLATKYALWWSPNGKFLAYAEFNDTDIPVIAYSYYGDEQYPRTINIPYPKAGAKN  221 (719)
T ss_dssp             CEECCCCCBTTTEEESSCCHHHHHHTTCSSCCEEECTTSSEEEEEEEECTTSCEEEEEECCSSSSCEEEEEECCBTTSCC
T ss_pred             cEEEecCCCcCCeEcccccceeeeecccCcccEEECCCCCEEEEEEECCCCCceEEeeccCCCCCccceeecCCCCCCCC
Confidence                                                6778888876542                               


Q ss_pred             ---eEEEEecCCCcee--eEEeccCCceeEEEEEEecCCCeeEEccccceEEEEEcCCCCeEEEeeecCC--CcEEEEe
Q 042146          187 ---TLRLWNYSTRKIL--KTYSGYTNSKYCISSTFSVTNGKYIVSHRDPVISVASHPAKNIIASGALDND--RTMKIWT  258 (262)
Q Consensus       187 ---~i~i~d~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~d~d--~~i~iw~  258 (262)
                         .|++||+.+++..  ..+...                ..+.+|...+..++|+||++++++.....+  ..|.+|+
T Consensus       222 ~~~~l~~~d~~~~~~~~~~~~~~~----------------~~~~~~~~~~~~~~~SpD~~~~~~~~~~~~~~~~l~~~d  284 (719)
T 1z68_A          222 PVVRIFIIDTTYPAYVGPQEVPVP----------------AMIASSDYYFSWLTWVTDERVCLQWLKRVQNVSVLSICD  284 (719)
T ss_dssp             CEEEEEEEESSCHHHHCCEECCCC----------------HHHHTSCEEEEEEEESSSSEEEEEEEESSTTEEEEEEEE
T ss_pred             CeeEEEEEECCCCCccceeEccCC----------------ccCCCCcceEEEeEEeCCCeEEEEEeccccCeEEEEEEc
Confidence               6677777766542  111000                001126778899999999887777541112  2477787

>3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A

Probab=99.72  E-value=1.4e-15  Score=128.82  Aligned_cols=173  Identities=14%  Similarity=0.180  Sum_probs=116.6

Q ss_pred             Cceeeeccc----ccceeccc-----CcCceEEEEEccCCCeEEEecCCCeEEEeecCCCCCCCCCCCCCCccccCCccc
Q 042146            5 RSLESFRPY----TLTQTLNG-----HLRAVSYVKFSHDGRLLTSSSAEKTLLTYSLSSISNFDSTPPSPLQKFTGHEQG   75 (262)
Q Consensus         5 ~~i~~~~~~----~~~~~~~~-----h~~~v~~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~   75 (262)
                      ..|+.++..    .....+..     |...+.+++|+|||+.|++++.+..            ..             ..
T Consensus       102 ~~l~~~~~~~~g~~~~~~l~~~~~~~~~~~~~~~~~spDg~~l~~~~~~~~------------~~-------------~~  156 (662)
T 3azo_A          102 QRLYAFEPDAPGGAVPRPLTPVSAVGGGLRWADPVLLPERGEVWCMAEEFT------------GE-------------GP  156 (662)
T ss_dssp             CCEEEECTTSTTCCCCEECSCCCCSTTCEEEEEEEEETTTTEEEEEEEEEC------------SS-------------ST
T ss_pred             CeEEEEcCCCCCCCCCEeccCCccCCCCccccCcEECCCCCEEEEEEeccc------------CC-------------CC
Confidence            456666543    44555655     6778999999999999999886520            00             00


Q ss_pred             cccceeEEEEecCCC-----ccceecc-cCCcceEEEEEeCCCCEEEeecCC--------CeEEEEECC-CC---eeeee
Q 042146           76 ISDLATIRLWDVPTA-----TSLKTLI-GHTNYVFCINFNPQSNRIVSDTFN--------ETIRIWDIK-TG---KCLKV  137 (262)
Q Consensus        76 v~~~~~i~v~d~~~~-----~~~~~~~-~~~~~v~~~~~~~~~~~l~~~~~d--------g~i~vwd~~-~~---~~~~~  137 (262)
                      -.....|++||+.+.     .....+. .+...+..++|+|||++|+.++.+        ..|.+||+. ++   +....
T Consensus       157 ~~~~~~i~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~SpDG~~la~~~~~~~~~~~~~~~i~~~d~~~~g~~~~~~~l  236 (662)
T 3azo_A          157 SDVRRFLAAVPLDGSAAADRSAVRELSDDAHRFVTGPRLSPDGRQAVWLAWDHPRMPWEGTELKTARVTEDGRFADTRTL  236 (662)
T ss_dssp             TCEEEEEEEEETTSTTTTCGGGSEESSCSCSSEECCCEECTTSSEEEEEEECTTCCTTTCEEEEEEEECTTSCEEEEEEE
T ss_pred             CCceeEEEEEECCCCccccCCceeEEEecCCCcccCceECCCCCEEEEEECCCCCCCCCCcEEEEEEECCCCcccccEEe
Confidence            000114556666651     2333444 555678889999999999877644        379999998 56   44444


Q ss_pred             eecCCCCeeeEEEccCCCEEEEEeCCC--eEEEEeCCC----------------------------CCccEEEEEcCCCe
Q 042146          138 LPAHSDPVTAIDFNRDGTMIVTSSYDG--LYRILDAST----------------------------PNGKFILVGTLDNT  187 (262)
Q Consensus       138 ~~~~~~~v~~~~~~~~~~~l~~~~~dg--~i~~~d~~~----------------------------~~~~~l~~~~~dg~  187 (262)
                      ...|...+..++|+|||++++++..++  .|.+||+..                            +++.++++++. +.
T Consensus       237 ~~~~~~~~~~~~~spdg~l~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~p~w~~~~~~~~~~~~~~~~~~~~~-~~  315 (662)
T 3azo_A          237 LGGPEEAIAQAEWAPDGSLIVATDRTGWWNLHRVDPATGAATQLCRREEEFAGPLWTPGMRWFAPLANGLIAVVHGK-GA  315 (662)
T ss_dssp             EEETTBCEEEEEECTTSCEEEEECTTSSCEEEEECTTTCCEEESSCCSSBSSCCCCSTTCCSEEECTTSCEEEEEBS-SS
T ss_pred             CCCCCceEcceEECCCCeEEEEECCCCCeEEEEEECCCCceeecccccccccCccccccCceEeEeCCCEEEEEEEc-Cc
Confidence            445578899999999999888888888  677776532                            36778888888 88


Q ss_pred             EEEE--ecCCCceeeEEec
Q 042146          188 LRLW--NYSTRKILKTYSG  204 (262)
Q Consensus       188 i~i~--d~~~~~~~~~~~~  204 (262)
                      ++||  |+.+++ +..+..
T Consensus       316 ~~l~~~d~~~~~-~~~l~~  333 (662)
T 3azo_A          316 AVLGILDPESGE-LVDAAG  333 (662)
T ss_dssp             CEEEEEETTTTE-EEECCS
T ss_pred             cEEEEEECCCCc-EEEecC
Confidence            8888  555454 455554

>4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ...

Probab=99.72  E-value=4e-16  Score=133.87  Aligned_cols=111  Identities=11%  Similarity=0.118  Sum_probs=83.9

Q ss_pred             CceEEEEEccCCCeEEEecCCCeEEEeecCCCCCCCCCCCCCCccccCCccccccceeEEEEecCCCccceecccCC---
Q 042146           24 RAVSYVKFSHDGRLLTSSSAEKTLLTYSLSSISNFDSTPPSPLQKFTGHEQGISDLATIRLWDVPTATSLKTLIGHT---  100 (262)
Q Consensus        24 ~~v~~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~i~v~d~~~~~~~~~~~~~~---  100 (262)
                      ....++.|+|++++++++  |+.|++||+.+                                   ++....+..|.   
T Consensus        17 ~~~~~~~w~~dg~~~~~~--~~~i~~~~~~~-----------------------------------~~~~~~~~~~~~~~   59 (740)
T 4a5s_A           17 LKLYSLRWISDHEYLYKQ--ENNILVFNAEY-----------------------------------GNSSVFLENSTFDE   59 (740)
T ss_dssp             CCCCCEEECSSSEEEEEE--TTEEEEEETTT-----------------------------------CCEEEEECTTTTTT
T ss_pred             ccccccEECCCCcEEEEc--CCcEEEEECCC-----------------------------------CceEEEEechhhhh
Confidence            346689999999999886  89988886643                                   33322233322   


Q ss_pred             --cceEEEEEeCCCCEEEeecCC---------CeEEEEECCCCeeeeeeecCCCCeeeEEEccCCCEEEEEeCCCeEEEE
Q 042146          101 --NYVFCINFNPQSNRIVSDTFN---------ETIRIWDIKTGKCLKVLPAHSDPVTAIDFNRDGTMIVTSSYDGLYRIL  169 (262)
Q Consensus       101 --~~v~~~~~~~~~~~l~~~~~d---------g~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~  169 (262)
                        .....++|+|||++|+.++.+         +.+.+||+.+++.. .+..|...+...+|||||+.|+.+. ++.|++|
T Consensus        60 ~~~~~~~~~~Spdg~~l~~~~~~~~~~r~~~~~~~~~~d~~~~~~~-~l~~~~~~~~~~~~SPdG~~la~~~-~~~i~~~  137 (740)
T 4a5s_A           60 FGHSINDYSISPDGQFILLEYNYVKQWRHSYTASYDIYDLNKRQLI-TEERIPNNTQWVTWSPVGHKLAYVW-NNDIYVK  137 (740)
T ss_dssp             CCSCCCEEEECTTSSEEEEEEEEEECSSSCEEEEEEEEETTTTEEC-CSSCCCTTEEEEEECSSTTCEEEEE-TTEEEEE
T ss_pred             hcccccceEECCCCCEEEEEECCeeeEEEccceEEEEEECCCCcEE-EcccCCCcceeeEECCCCCEEEEEE-CCeEEEE
Confidence              223458899999999998875         56779999998764 4556778899999999999998884 7899999


Q ss_pred             eCCC
Q 042146          170 DAST  173 (262)
Q Consensus       170 d~~~  173 (262)
                      ++..
T Consensus       138 ~~~~  141 (740)
T 4a5s_A          138 IEPN  141 (740)
T ss_dssp             SSTT
T ss_pred             ECCC
Confidence            8643

>2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ...

Probab=99.71  E-value=2.5e-15  Score=118.22  Aligned_cols=226  Identities=12%  Similarity=0.153  Sum_probs=152.1

Q ss_pred             CCceeeec--ccccceecccCcCceEEEEEccCCCeEEEec----------CCCeEEEeecCCCCCCCCCC---------
Q 042146            4 DRSLESFR--PYTLTQTLNGHLRAVSYVKFSHDGRLLTSSS----------AEKTLLTYSLSSISNFDSTP---------   62 (262)
Q Consensus         4 d~~i~~~~--~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~----------~d~~i~iw~~~~~~~~~~~~---------   62 (262)
                      |+++..|+  ..+++.++..+..+  .++|+||++++++++          .++.|.+||....+......         
T Consensus        30 d~~v~v~D~~t~~~~~~i~~g~~p--~i~~spdg~~lyv~~~~~~~~~~g~~~~~v~v~d~~t~~~~~~i~~~~~~~~~g  107 (361)
T 2oiz_A           30 ESRVHVYDYTNGKFLGMVPTAFNG--HVQVSNDGKKIYTMTTYHERITRGKRSDVVEVWDADKLTFEKEISLPPKRVQGL  107 (361)
T ss_dssp             GCEEEEEETTTCCEEEEEECCEEE--EEEECTTSSEEEEEEEEETTSSSSCEEEEEEEEETTTCCEEEEEEECTTBCCBC
T ss_pred             cCeEEEEECCCCeEEEEecCCCCC--ceEECCCCCEEEEEEecccccccCCCCCEEEEEECcCCcEEEEEEcCccccccC
Confidence            56777776  45667777777666  899999999999886          36789999987543221110         


Q ss_pred             CCC-CccccCCcccc--c--c-ceeEEEEecCCCcccee-cccCCcceEEEEEeCCC-CEEEeecCCCeEEEEECCC-Ce
Q 042146           63 PSP-LQKFTGHEQGI--S--D-LATIRLWDVPTATSLKT-LIGHTNYVFCINFNPQS-NRIVSDTFNETIRIWDIKT-GK  133 (262)
Q Consensus        63 ~~~-~~~~~~~~~~v--~--~-~~~i~v~d~~~~~~~~~-~~~~~~~v~~~~~~~~~-~~l~~~~~dg~i~vwd~~~-~~  133 (262)
                      ..+ ...+......+  .  . ...|.+||+.+++.+.. +... . ...+.+.|++ ..+++.+.||.+.+|++.. ++
T Consensus       108 ~~p~~i~~spdg~~l~v~n~~~~~~v~v~d~~~~~~~~~~i~~~-~-~~~v~~~p~~~~~~~~~~~dg~~~~v~~~~~g~  185 (361)
T 2oiz_A          108 NYDGLFRQTTDGKFIVLQNASPATSIGIVDVAKGDYVEDVTAAA-G-CWSVIPQPNRPRSFMTICGDGGLLTINLGEDGK  185 (361)
T ss_dssp             CCGGGEEECTTSSEEEEEEESSSEEEEEEETTTTEEEEEEGGGT-T-EEEEEECTTSSSEEEEEETTSSEEEEEECTTSS
T ss_pred             CCcceEEECCCCCEEEEECCCCCCeEEEEECCCCcEEEEEecCC-C-cceeEEcCCCCeeEEEECCCCcEEEEEECCCCc
Confidence            000 01111111111  1  1 34799999999888776 5432 2 2335677765 6778888899999999865 54


Q ss_pred             eee------eeecCCCCeeeEEEccCCCEEEEEeCCCeEEEEeCCC--------------------------------CC
Q 042146          134 CLK------VLPAHSDPVTAIDFNRDGTMIVTSSYDGLYRILDAST--------------------------------PN  175 (262)
Q Consensus       134 ~~~------~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~d~~~--------------------------------~~  175 (262)
                      ...      .+.....++ .+.++|++..++..+.++.+.++|+..                                ++
T Consensus       186 ~~~~~~~~~~~~~~~~~~-~~~~~~~g~~~~~~~~~~~v~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~g~~~~a~~~d  264 (361)
T 2oiz_A          186 VASQSRSKQMFSVKDDPI-FIAPALDKDKAHFVSYYGNVYSADFSGDEVKVDGPWSLLNDEDKAKNWVPGGYNLVGLHRA  264 (361)
T ss_dssp             EEEEEECCCCSCTTTSCB-CSCCEECSSEEEEEBTTSEEEEEECSSSSCEEEEEEESCCHHHHHTTCEECCSSCEEEETT
T ss_pred             EeeeccccceEcCCCCce-EEEecccCCEEEEEeCCCeEEEEEecCCCceecccccccCccccccccccCCeeEEEEecC
Confidence            431      222222332 344567777777778888899988631                                34


Q ss_pred             ccEEEEEcC-----------CCeEEEEecCCCceeeEEeccCCceeEEEEEEecCCCeeEEccccceEEEEEcCCCCeEE
Q 042146          176 GKFILVGTL-----------DNTLRLWNYSTRKILKTYSGYTNSKYCISSTFSVTNGKYIVSHRDPVISVASHPAKNIIA  244 (262)
Q Consensus       176 ~~~l~~~~~-----------dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~  244 (262)
                      ++.++++..           .+.|.+||+.+++.+.++..                      +.  +..++|+|++++|+
T Consensus       265 g~~lyv~~~~~~~~~~~~~~~~~v~viD~~t~~~v~~i~~----------------------~~--p~~ia~spdg~~l~  320 (361)
T 2oiz_A          265 SGRMYVFMHPDGKEGTHKFPAAEIWVMDTKTKQRVARIPG----------------------RD--ALSMTIDQQRNLML  320 (361)
T ss_dssp             TTEEEEEEESSCCTTCTTCCCSEEEEEETTTTEEEEEEEC----------------------TT--CCEEEEETTTTEEE
T ss_pred             CCeEEEEEccCCCcccccCCCceEEEEECCCCcEEEEEec----------------------CC--eeEEEECCCCCEEE
Confidence            455555432           34799999999999998875                      44  88999999999999


Q ss_pred             EeeecCCCcEEEEeecc
Q 042146          245 SGALDNDRTMKIWTQEK  261 (262)
Q Consensus       245 ~~~~d~d~~i~iw~~~~  261 (262)
                      +++  . +.|.+||...
T Consensus       321 v~n--~-~~v~v~D~~t  334 (361)
T 2oiz_A          321 TLD--G-GNVNVYDISQ  334 (361)
T ss_dssp             EEC--S-SCEEEEECSS
T ss_pred             EeC--C-CeEEEEECCC
Confidence            887  5 9999999764

>2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A

Probab=99.70  E-value=4.3e-14  Score=109.79  Aligned_cols=205  Identities=10%  Similarity=0.109  Sum_probs=137.5

Q ss_pred             CCCceeeecccccceecccCcCceEEEEEccCCCeEEEecCCCeEEEeecCCCCCCCCCCCCCCccccCCccccccceeE
Q 042146            3 SDRSLESFRPYTLTQTLNGHLRAVSYVKFSHDGRLLTSSSAEKTLLTYSLSSISNFDSTPPSPLQKFTGHEQGISDLATI   82 (262)
Q Consensus         3 ~d~~i~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~i   82 (262)
                      .++++..+ ..+....+..+...+.+++|+|++++++++..++.|.+||.+.                            
T Consensus        25 ~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~~~i~~~d~~~----------------------------   75 (333)
T 2dg1_A           25 SESELQTI-TAEPWLEISKKGLQLEGLNFDRQGQLFLLDVFEGNIFKINPET----------------------------   75 (333)
T ss_dssp             CGGGSCEE-ECEEEEEEESSCCCEEEEEECTTSCEEEEETTTCEEEEECTTT----------------------------
T ss_pred             ecccCccc-ccceeEEEeccCccccCcEECCCCCEEEEECCCCEEEEEeCCC----------------------------
Confidence            45556666 4445556667777889999999999888888888888886532                            


Q ss_pred             EEEecCCCccceecccCCcceEEEEEeCCCCEEEeecCC----CeEEEEECCCCeeeeeee--cCCCCeeeEEEccCCCE
Q 042146           83 RLWDVPTATSLKTLIGHTNYVFCINFNPQSNRIVSDTFN----ETIRIWDIKTGKCLKVLP--AHSDPVTAIDFNRDGTM  156 (262)
Q Consensus        83 ~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d----g~i~vwd~~~~~~~~~~~--~~~~~v~~~~~~~~~~~  156 (262)
                             ++.......+...+.+++++|+++++++...+    +.|.+||..+++....+.  .+...+.+++++|++++
T Consensus        76 -------~~~~~~~~~~~~~~~~i~~~~dg~l~v~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~i~~d~~g~l  148 (333)
T 2dg1_A           76 -------KEIKRPFVSHKANPAAIKIHKDGRLFVCYLGDFKSTGGIFAATENGDNLQDIIEDLSTAYCIDDMVFDSKGGF  148 (333)
T ss_dssp             -------CCEEEEEECSSSSEEEEEECTTSCEEEEECTTSSSCCEEEEECTTSCSCEEEECSSSSCCCEEEEEECTTSCE
T ss_pred             -------CcEEEEeeCCCCCcceEEECCCCcEEEEeCCCCCCCceEEEEeCCCCEEEEEEccCccCCcccceEECCCCCE
Confidence                   22222122345679999999999988887766    689999998776543332  23457899999999987


Q ss_pred             EEEEeC------CCeEEEEeCCC-------------------CCccEE-EEEcCCCeEEEEecCC-CceeeEEeccCCce
Q 042146          157 IVTSSY------DGLYRILDAST-------------------PNGKFI-LVGTLDNTLRLWNYST-RKILKTYSGYTNSK  209 (262)
Q Consensus       157 l~~~~~------dg~i~~~d~~~-------------------~~~~~l-~~~~~dg~i~i~d~~~-~~~~~~~~~~~~~~  209 (262)
                      +++...      .+.|..+|...                   ++++.| ++.+.++.|.+||+.+ +..+..+...    
T Consensus       149 ~v~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~dg~~l~v~~~~~~~i~~~d~~~~g~~~~~~~~~----  224 (333)
T 2dg1_A          149 YFTDFRGYSTNPLGGVYYVSPDFRTVTPIIQNISVANGIALSTDEKVLWVTETTANRLHRIALEDDGVTIQPFGAT----  224 (333)
T ss_dssp             EEEECCCBTTBCCEEEEEECTTSCCEEEEEEEESSEEEEEECTTSSEEEEEEGGGTEEEEEEECTTSSSEEEEEEE----
T ss_pred             EEEeccccccCCCceEEEEeCCCCEEEEeecCCCcccceEECCCCCEEEEEeCCCCeEEEEEecCCCcCcccccce----
Confidence            776653      35677776542                   566644 4445678899999863 3333322100    


Q ss_pred             eEEEEEEecCCCeeEEccccceEEEEEcCCCCeEEEeeecCCCcEEEEeec
Q 042146          210 YCISSTFSVTNGKYIVSHRDPVISVASHPAKNIIASGALDNDRTMKIWTQE  260 (262)
Q Consensus       210 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~d~d~~i~iw~~~  260 (262)
                          ......       ....+..+++++++.++++..  .++.|.+|+.+
T Consensus       225 ----~~~~~~-------~~~~~~~i~~d~~G~l~v~~~--~~~~v~~~d~~  262 (333)
T 2dg1_A          225 ----IPYYFT-------GHEGPDSCCIDSDDNLYVAMY--GQGRVLVFNKR  262 (333)
T ss_dssp             ----EEEECC-------SSSEEEEEEEBTTCCEEEEEE--TTTEEEEECTT
T ss_pred             ----EEEecC-------CCCCCCceEECCCCCEEEEEc--CCCEEEEECCC
Confidence                000000       113567899999999888776  67899999874

>3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A

Probab=99.68  E-value=2.6e-15  Score=127.21  Aligned_cols=227  Identities=8%  Similarity=-0.036  Sum_probs=147.2

Q ss_pred             ceecccCcCceEEEEEccCCCeEEEe--cCCCeEEEeecCCCCCC-CCCCC-CCCc---------c--cc--CCccc-cc
Q 042146           16 TQTLNGHLRAVSYVKFSHDGRLLTSS--SAEKTLLTYSLSSISNF-DSTPP-SPLQ---------K--FT--GHEQG-IS   77 (262)
Q Consensus        16 ~~~~~~h~~~v~~~~~~~~~~~l~s~--~~d~~i~iw~~~~~~~~-~~~~~-~~~~---------~--~~--~~~~~-v~   77 (262)
                      ...+.+|...+..++|++++-++++.  +.++...||........ ..... ....         .  +.  ..... +.
T Consensus        16 ~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~SPDg~~~la   95 (662)
T 3azo_A           16 AALVASRSGRPACVGAVGDEVWWVAPRPAEAGRATLVRRRADGAEESALPAPWNVRNRVFEYSGFPWAGVPRPAGGPLLV   95 (662)
T ss_dssp             HHHHHHTCSCCEEEEEETTEEEEEEEETTTTTEEEEEEECTTSCEEESSCTTCCBCCCGGGTCCCCEEEECCSSSSCEEE
T ss_pred             HHHHhhcCCccceeEEcCCeEEEEecCcccCCcEEEEEECCCCCcceeCCCCccccccccccCCccceeeeecCCCeEEE
Confidence            34567899999999999988788887  67889999985322111 11000 1101         1  11  11111 11


Q ss_pred             c----ceeEEEEecC--CCccceeccc-----CCcceEEEEEeCCCCEEEeecCC----------CeEEEEECCC-----
Q 042146           78 D----LATIRLWDVP--TATSLKTLIG-----HTNYVFCINFNPQSNRIVSDTFN----------ETIRIWDIKT-----  131 (262)
Q Consensus        78 ~----~~~i~v~d~~--~~~~~~~~~~-----~~~~v~~~~~~~~~~~l~~~~~d----------g~i~vwd~~~-----  131 (262)
                      .    ...|.++++.  .......+..     |...+..++|+|||+.|++++.+          ..|++||+.+     
T Consensus        96 ~~~~~~~~l~~~~~~~~g~~~~~~l~~~~~~~~~~~~~~~~~spDg~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~  175 (662)
T 3azo_A           96 FTHFGDQRLYAFEPDAPGGAVPRPLTPVSAVGGGLRWADPVLLPERGEVWCMAEEFTGEGPSDVRRFLAAVPLDGSAAAD  175 (662)
T ss_dssp             EEBTTTCCEEEECTTSTTCCCCEECSCCCCSTTCEEEEEEEEETTTTEEEEEEEEECSSSTTCEEEEEEEEETTSTTTTC
T ss_pred             EEECCCCeEEEEcCCCCCCCCCEeccCCccCCCCccccCcEECCCCCEEEEEEecccCCCCCCceeEEEEEECCCCcccc
Confidence            1    1256666664  2033444544     66788999999999999988876          5899999987     


Q ss_pred             -Ceeeeeee-cCCCCeeeEEEccCCCEEEEEeCC--------CeEEEEeCC-C-----------------------CCcc
Q 042146          132 -GKCLKVLP-AHSDPVTAIDFNRDGTMIVTSSYD--------GLYRILDAS-T-----------------------PNGK  177 (262)
Q Consensus       132 -~~~~~~~~-~~~~~v~~~~~~~~~~~l~~~~~d--------g~i~~~d~~-~-----------------------~~~~  177 (262)
                       ++. ..+. .+...+..++|+|||++|+.++.+        ..|.+||+. .                       |+++
T Consensus       176 ~~~~-~~l~~~~~~~~~~~~~SpDG~~la~~~~~~~~~~~~~~~i~~~d~~~~g~~~~~~~l~~~~~~~~~~~~~spdg~  254 (662)
T 3azo_A          176 RSAV-RELSDDAHRFVTGPRLSPDGRQAVWLAWDHPRMPWEGTELKTARVTEDGRFADTRTLLGGPEEAIAQAEWAPDGS  254 (662)
T ss_dssp             GGGS-EESSCSCSSEECCCEECTTSSEEEEEEECTTCCTTTCEEEEEEEECTTSCEEEEEEEEEETTBCEEEEEECTTSC
T ss_pred             CCce-eEEEecCCCcccCceECCCCCEEEEEECCCCCCCCCCcEEEEEEECCCCcccccEEeCCCCCceEcceEECCCCe
Confidence             554 4444 556778899999999999887755        378888876 2                       6778


Q ss_pred             EEEEEcCCC--eEEEEecCCCceeeEEeccCCceeEEEEEEecCCCeeEEccccceEEEEEcCCCCeEEEeeecCCCcEE
Q 042146          178 FILVGTLDN--TLRLWNYSTRKILKTYSGYTNSKYCISSTFSVTNGKYIVSHRDPVISVASHPAKNIIASGALDNDRTMK  255 (262)
Q Consensus       178 ~l~~~~~dg--~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~d~d~~i~  255 (262)
                      +++++..++  .|++||+.+++.......+... ...  .           ..-.+..++|+|++.++++++  . +.++
T Consensus       255 l~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~-~~p--~-----------w~~~~~~~~~~~~~~~~~~~~--~-~~~~  317 (662)
T 3azo_A          255 LIVATDRTGWWNLHRVDPATGAATQLCRREEEF-AGP--L-----------WTPGMRWFAPLANGLIAVVHG--K-GAAV  317 (662)
T ss_dssp             EEEEECTTSSCEEEEECTTTCCEEESSCCSSBS-SCC--C-----------CSTTCCSEEECTTSCEEEEEB--S-SSCE
T ss_pred             EEEEECCCCCeEEEEEECCCCceeecccccccc-cCc--c-----------ccccCceEeEeCCCEEEEEEE--c-CccE
Confidence            777777777  6677777666654333321100 000  0           001145789999999999998  7 9999


Q ss_pred             EEeec
Q 042146          256 IWTQE  260 (262)
Q Consensus       256 iw~~~  260 (262)
                      ||.++
T Consensus       318 l~~~d  322 (662)
T 3azo_A          318 LGILD  322 (662)
T ss_dssp             EEEEE
T ss_pred             EEEEE
Confidence            99654

>3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633}

Probab=99.68  E-value=2.4e-15  Score=119.40  Aligned_cols=209  Identities=11%  Similarity=0.040  Sum_probs=134.0

Q ss_pred             EEEEEccCCCeEEEecCCCeEEEeecCCCCCCCCCC--CCC--C-------------------ccccCCcccc-------
Q 042146           27 SYVKFSHDGRLLTSSSAEKTLLTYSLSSISNFDSTP--PSP--L-------------------QKFTGHEQGI-------   76 (262)
Q Consensus        27 ~~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~--~~~--~-------------------~~~~~~~~~v-------   76 (262)
                      ..+.|+|||++|+.++.++.|++|++..........  ...  .                   ..+......+       
T Consensus        84 ~~~~~spdg~~l~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~spdg~~~~~~~~~~  163 (396)
T 3c5m_A           84 FGGFISTDERAFFYVKNELNLMKVDLETLEEQVIYTVDEEWKGYGTWVANSDCTKLVGIEILKRDWQPLTSWEKFAEFYH  163 (396)
T ss_dssp             TTCEECTTSSEEEEEETTTEEEEEETTTCCEEEEEECCTTEEEEEEEEECTTSSEEEEEEEEGGGCCCCCSHHHHHHHHH
T ss_pred             ccceECCCCCEEEEEEcCCcEEEEECCCCCcEEEEecccccCCCCCEEEeccCCccccccccccccCCCCcceeeeeecc
Confidence            347899999999999999999999987643211100  000  0                   0000000000       


Q ss_pred             -ccceeEEEEecCCCccceecccCCcceEEEEEeC-CCCEEEeecCC------CeEEEEECCCCeeeeeeecC-CCCeee
Q 042146           77 -SDLATIRLWDVPTATSLKTLIGHTNYVFCINFNP-QSNRIVSDTFN------ETIRIWDIKTGKCLKVLPAH-SDPVTA  147 (262)
Q Consensus        77 -~~~~~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~d------g~i~vwd~~~~~~~~~~~~~-~~~v~~  147 (262)
                       .....|.+||+.+++..... .+...+..+.|+| +++.++..+.+      ..|.+||+..++........ ...+..
T Consensus       164 ~~~~~~l~~~d~~~g~~~~~~-~~~~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~  242 (396)
T 3c5m_A          164 TNPTCRLIKVDIETGELEVIH-QDTAWLGHPIYRPFDDSTVGFCHEGPHDLVDARMWLVNEDGSNVRKIKEHAEGESCTH  242 (396)
T ss_dssp             TCCCEEEEEEETTTCCEEEEE-EESSCEEEEEEETTEEEEEEEEECSCSSSCSCCCEEEETTSCCCEESSCCCTTEEEEE
T ss_pred             CCCcceEEEEECCCCcEEeec-cCCcccccceECCCCCCEEEEEecCCCCCCCceEEEEECCCCceeEeeccCCCccccc
Confidence             12237999999887654433 4667789999999 78877655433      46889998766533332211 235788


Q ss_pred             EEEccCCCEEEEEeCC-----CeEEEEeCCC-----------------C-CccEEEEEc----------------CCCeE
Q 042146          148 IDFNRDGTMIVTSSYD-----GLYRILDAST-----------------P-NGKFILVGT----------------LDNTL  188 (262)
Q Consensus       148 ~~~~~~~~~l~~~~~d-----g~i~~~d~~~-----------------~-~~~~l~~~~----------------~dg~i  188 (262)
                      ++|+|+|+.|+.++.+     +.|.+||+.+                 + ++++++.++                .++.|
T Consensus       243 ~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~g~~~~l~~~~~~~~~~s~~dg~~l~~~~~~~p~~~~~~~~~~~~~~~~i  322 (396)
T 3c5m_A          243 EFWIPDGSAMAYVSYFKGQTDRVIYKANPETLENEEVMVMPPCSHLMSNFDGSLMVGDGCDAPVDVADADSYNIENDPFL  322 (396)
T ss_dssp             EEECTTSSCEEEEEEETTTCCEEEEEECTTTCCEEEEEECCSEEEEEECSSSSEEEEEECCC----------CCCCCCEE
T ss_pred             eEECCCCCEEEEEecCCCCccceEEEEECCCCCeEEeeeCCCCCCCccCCCCceEEEecCCcceeeccccccccCCCCcE
Confidence            9999999987777544     4599999865                 4 777776643                23678


Q ss_pred             EEEecCCCceeeEEeccCCceeEEEEEEecCCCeeEEcccc-----------ceEEEEEcCCCCeEEEeeecCCCcEEEE
Q 042146          189 RLWNYSTRKILKTYSGYTNSKYCISSTFSVTNGKYIVSHRD-----------PVISVASHPAKNIIASGALDNDRTMKIW  257 (262)
Q Consensus       189 ~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~v~~~~~~p~~~~l~~~~~d~d~~i~iw  257 (262)
                      ++||+.+++.. .+..                      +..           .+..++|+|+++.|+.++. .++...+|
T Consensus       323 ~~~d~~~~~~~-~l~~----------------------~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~s~-~~~~~~l~  378 (396)
T 3c5m_A          323 YVLNTKAKSAQ-KLCK----------------------HSTSWDVLDGDRQITHPHPSFTPNDDGVLFTSD-FEGVPAIY  378 (396)
T ss_dssp             EEEETTTTBCC-EEEE----------------------CCCCCCCBTTBSSTTCCCCEECTTSSEEEEEEC-TTSSCEEE
T ss_pred             EEEecccCceE-EccC----------------------CCCccccccccccCCCCCceEccCCCeEEEEec-CCCCceEE
Confidence            88888776643 2322                      222           2456789999998887763 36777777


Q ss_pred             eec
Q 042146          258 TQE  260 (262)
Q Consensus       258 ~~~  260 (262)
                      .++
T Consensus       379 ~~~  381 (396)
T 3c5m_A          379 IAD  381 (396)
T ss_dssp             EEE
T ss_pred             EEE
Confidence            664

>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A

Probab=99.67  E-value=2.2e-13  Score=107.03  Aligned_cols=184  Identities=13%  Similarity=0.198  Sum_probs=116.7

Q ss_pred             ceecccCcCceEEEEEccCCCeEEEec-CCCeEEEeecCCCCCCCCCC------C-CCC-----------ccccCCcccc
Q 042146           16 TQTLNGHLRAVSYVKFSHDGRLLTSSS-AEKTLLTYSLSSISNFDSTP------P-SPL-----------QKFTGHEQGI   76 (262)
Q Consensus        16 ~~~~~~h~~~v~~~~~~~~~~~l~s~~-~d~~i~iw~~~~~~~~~~~~------~-~~~-----------~~~~~~~~~v   76 (262)
                      +.....+......+++  ++++|++++ .++.|.+|++..........      . .+.           ..+......+
T Consensus        92 ~~~~~~~~~~p~~~~~--dg~~l~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~spdg~~l  169 (361)
T 3scy_A           92 LNTQKTMGADPCYLTT--NGKNIVTANYSGGSITVFPIGQDGALLPASDVIEFKGSGPDKERQTMPHLHCVRITPDGKYL  169 (361)
T ss_dssp             EEEEECSSSCEEEEEE--CSSEEEEEETTTTEEEEEEBCTTSCBCSCSEEEECCCCCSCTTTCSSCCEEEEEECTTSSEE
T ss_pred             eeEeccCCCCcEEEEE--CCCEEEEEECCCCEEEEEEeCCCCcCcccceeEEccCCCCCccccCCCcceEEEECCCCCEE
Confidence            3344445566777887  777776665 68899999986532211100      0 000           1111111111


Q ss_pred             cc----ceeEEEEecCCCcc------c-------eecccCCcceEEEEEeCCCCEEEeec-CCCeEEEEECCCCee--ee
Q 042146           77 SD----LATIRLWDVPTATS------L-------KTLIGHTNYVFCINFNPQSNRIVSDT-FNETIRIWDIKTGKC--LK  136 (262)
Q Consensus        77 ~~----~~~i~v~d~~~~~~------~-------~~~~~~~~~v~~~~~~~~~~~l~~~~-~dg~i~vwd~~~~~~--~~  136 (262)
                      ..    ...|.+|++.....      +       .....+......++|+|+++++++++ .++.|.+||+.+++.  +.
T Consensus       170 ~~~~~~~~~v~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~~~~~g~~~~~~  249 (361)
T 3scy_A          170 LADDLGTDQIHKFNINPNANADNKEKFLTKGTPEAFKVAPGSGPRHLIFNSDGKFAYLINEIGGTVIAFRYADGMLDEIQ  249 (361)
T ss_dssp             EEEETTTTEEEEEEECTTCCTTTCCCCEEEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTCEEEEEEEETTEEEEEE
T ss_pred             EEEeCCCCEEEEEEEcCCCCcccccceeecccccceecCCCCCCeEEEEcCCCCEEEEEcCCCCeEEEEEecCCceEEeE
Confidence            11    22789998875432      1       11223445678999999999887666 689999999987754  22


Q ss_pred             ee---ecCCCCeeeEEEccCCCEEEEEeCC--CeEEEEeCCC-----------------------CCccEEEEEc-CCCe
Q 042146          137 VL---PAHSDPVTAIDFNRDGTMIVTSSYD--GLYRILDAST-----------------------PNGKFILVGT-LDNT  187 (262)
Q Consensus       137 ~~---~~~~~~v~~~~~~~~~~~l~~~~~d--g~i~~~d~~~-----------------------~~~~~l~~~~-~dg~  187 (262)
                      .+   ..+......++|+|+|++|+++..+  +.|.+|++..                       |++++|++++ .++.
T Consensus       250 ~~~~~~~~~~~~~~i~~spdg~~l~v~~~~~~~~i~v~~~~~~~g~~~~~~~~~~g~~~~~~~~spdg~~l~~~~~~~~~  329 (361)
T 3scy_A          250 TVAADTVNAQGSGDIHLSPDGKYLYASNRLKADGVAIFKVDETNGTLTKVGYQLTGIHPRNFIITPNGKYLLVACRDTNV  329 (361)
T ss_dssp             EEESCSSCCCCEEEEEECTTSSEEEEEECSSSCEEEEEEECTTTCCEEEEEEEECSSCCCEEEECTTSCEEEEEETTTTE
T ss_pred             EEecCCCCCCCcccEEECCCCCEEEEECCCCCCEEEEEEEcCCCCcEEEeeEecCCCCCceEEECCCCCEEEEEECCCCC
Confidence            22   2233456899999999988776654  8999999851                       7888888877 6789


Q ss_pred             EEEE--ecCCCceeeE
Q 042146          188 LRLW--NYSTRKILKT  201 (262)
Q Consensus       188 i~i~--d~~~~~~~~~  201 (262)
                      |.+|  |..++++...
T Consensus       330 v~v~~~d~~~g~~~~~  345 (361)
T 3scy_A          330 IQIFERDQATGLLTDI  345 (361)
T ss_dssp             EEEEEECTTTCCEEEC
T ss_pred             EEEEEEECCCCcEeec
Confidence            9995  5556665443

>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}

Probab=99.66  E-value=3.8e-14  Score=107.16  Aligned_cols=163  Identities=10%  Similarity=0.045  Sum_probs=123.6

Q ss_pred             CCCeEEEecCCCeEEEeecCCCCCCCCCCCCCCccccCCccccccceeEEEEecCCCccceecccCC-cceEEEEEeCCC
Q 042146           34 DGRLLTSSSAEKTLLTYSLSSISNFDSTPPSPLQKFTGHEQGISDLATIRLWDVPTATSLKTLIGHT-NYVFCINFNPQS  112 (262)
Q Consensus        34 ~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~i~v~d~~~~~~~~~~~~~~-~~v~~~~~~~~~  112 (262)
                      .++.|++++.++.|.+||.                                   ++++.+.++..+. ..+.++.+.|+|
T Consensus         4 ~~~~lv~~~~~~~v~~~d~-----------------------------------~tG~~~w~~~~~~~~~~~~~~~~pdG   48 (276)
T 3no2_A            4 PQHLLVGGSGWNKIAIINK-----------------------------------DTKEIVWEYPLEKGWECNSVAATKAG   48 (276)
T ss_dssp             CCEEEEECTTCSEEEEEET-----------------------------------TTTEEEEEEECCTTCCCCEEEECTTS
T ss_pred             CCcEEEeeCCCCEEEEEEC-----------------------------------CCCeEEEEeCCCccCCCcCeEECCCC
Confidence            4678999999998887754                                   4566666665554 467889999999


Q ss_pred             CEEEeecCCCeEEEEECCCCeeeeeeecCC-CCeeeEEEccCCCEEEEEeC-CCeEEEEeCCC-----------------
Q 042146          113 NRIVSDTFNETIRIWDIKTGKCLKVLPAHS-DPVTAIDFNRDGTMIVTSSY-DGLYRILDAST-----------------  173 (262)
Q Consensus       113 ~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~-~~v~~~~~~~~~~~l~~~~~-dg~i~~~d~~~-----------------  173 (262)
                      +++++  .++.|..||. +++.+..+..+. ..+.++.+.|+|+.+++.+. ++.+..+|...                 
T Consensus        49 ~ilvs--~~~~V~~~d~-~G~~~W~~~~~~~~~~~~~~~~~dG~~lv~~~~~~~~v~~vd~~Gk~l~~~~~~~~~~~~~~  125 (276)
T 3no2_A           49 EILFS--YSKGAKMITR-DGRELWNIAAPAGCEMQTARILPDGNALVAWCGHPSTILEVNMKGEVLSKTEFETGIERPHA  125 (276)
T ss_dssp             CEEEE--CBSEEEEECT-TSCEEEEEECCTTCEEEEEEECTTSCEEEEEESTTEEEEEECTTSCEEEEEEECCSCSSGGG
T ss_pred             CEEEe--CCCCEEEECC-CCCEEEEEcCCCCccccccEECCCCCEEEEecCCCCEEEEEeCCCCEEEEEeccCCCCcccc
Confidence            98883  4778999998 899999988653 47889999999999999887 77777666422                 


Q ss_pred             --------CCccEEEEEcCCCeEEEEecCCCceeeEEeccCCceeEEEEEEecCCCeeEEccccceEEEEEcCCCCeEEE
Q 042146          174 --------PNGKFILVGTLDNTLRLWNYSTRKILKTYSGYTNSKYCISSTFSVTNGKYIVSHRDPVISVASHPAKNIIAS  245 (262)
Q Consensus       174 --------~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~  245 (262)
                              ++++++++...++.|..||.. |+.+.++...                       ..+.++...++++++++
T Consensus       126 ~~~~v~~~~~G~~lv~~~~~~~v~~~d~~-G~~~w~~~~~-----------------------~~~~~~~~~~~g~~~v~  181 (276)
T 3no2_A          126 QFRQINKNKKGNYLVPLFATSEVREIAPN-GQLLNSVKLS-----------------------GTPFSSAFLDNGDCLVA  181 (276)
T ss_dssp             SCSCCEECTTSCEEEEETTTTEEEEECTT-SCEEEEEECS-----------------------SCCCEEEECTTSCEEEE
T ss_pred             cccCceECCCCCEEEEecCCCEEEEECCC-CCEEEEEECC-----------------------CCccceeEcCCCCEEEE
Confidence                    578899999999999999998 9999988752                       22334556677777766


Q ss_pred             eeecCCCcEEEEeec
Q 042146          246 GALDNDRTMKIWTQE  260 (262)
Q Consensus       246 ~~~d~d~~i~iw~~~  260 (262)
                      ++  .++.|..++.+
T Consensus       182 ~~--~~~~v~~~d~~  194 (276)
T 3no2_A          182 CG--DAHCFVQLNLE  194 (276)
T ss_dssp             CB--TTSEEEEECTT
T ss_pred             eC--CCCeEEEEeCc
Confidence            66  55566665544

>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A

Probab=99.66  E-value=8e-14  Score=104.96  Aligned_cols=178  Identities=12%  Similarity=0.069  Sum_probs=124.8

Q ss_pred             cCceEEEEEccCCCeEEEecCCCeEEEeecCCCCCCCCCCCCCCccccCCccccccceeEEEEecCCCccceecc-cCCc
Q 042146           23 LRAVSYVKFSHDGRLLTSSSAEKTLLTYSLSSISNFDSTPPSPLQKFTGHEQGISDLATIRLWDVPTATSLKTLI-GHTN  101 (262)
Q Consensus        23 ~~~v~~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~i~v~d~~~~~~~~~~~-~~~~  101 (262)
                      ...+.+++++++++++++.. ++.|.+||....                                   . ...+. ....
T Consensus        66 ~~~p~~i~~~~~g~l~v~~~-~~~i~~~d~~~~-----------------------------------~-~~~~~~~~~~  108 (270)
T 1rwi_B           66 LYQPQGLAVDGAGTVYVTDF-NNRVVTLAAGSN-----------------------------------N-QTVLPFDGLN  108 (270)
T ss_dssp             CCSCCCEEECTTCCEEEEET-TTEEEEECTTCS-----------------------------------C-CEECCCCSCS
T ss_pred             cCCcceeEECCCCCEEEEcC-CCEEEEEeCCCc-----------------------------------e-EeeeecCCcC
Confidence            35678899999998666666 788888865331                                   1 11111 1224


Q ss_pred             ceEEEEEeCCCCEEEeecCCCeEEEEECCCCeeeeeeecCCCCeeeEEEccCCCEEEEEeCCCeEEEEeCCC--------
Q 042146          102 YVFCINFNPQSNRIVSDTFNETIRIWDIKTGKCLKVLPAHSDPVTAIDFNRDGTMIVTSSYDGLYRILDAST--------  173 (262)
Q Consensus       102 ~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~d~~~--------  173 (262)
                      .+..++++|+++++++...++.|.+|+..+.............+.+++++|+++++++...++.|.+||...        
T Consensus       109 ~p~~i~~~~~g~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~~~~~~~~~~  188 (270)
T 1rwi_B          109 YPEGLAVDTQGAVYVADRGNNRVVKLAAGSKTQTVLPFTGLNDPDGVAVDNSGNVYVTDTDNNRVVKLEAESNNQVVLPF  188 (270)
T ss_dssp             SEEEEEECTTCCEEEEEGGGTEEEEECTTCCSCEECCCCSCCSCCCEEECTTCCEEEEEGGGTEEEEECTTTCCEEECCC
T ss_pred             CCcceEECCCCCEEEEECCCCEEEEEECCCceeEeeccccCCCceeEEEeCCCCEEEEECCCCEEEEEecCCCceEeecc
Confidence            578999999999888877788999998665543332223334678999999999777777788999999765        


Q ss_pred             ------------CCccEEEEEcCCCeEEEEecCCCceeeEEeccCCceeEEEEEEecCCCeeEEccccceEEEEEcCCCC
Q 042146          174 ------------PNGKFILVGTLDNTLRLWNYSTRKILKTYSGYTNSKYCISSTFSVTNGKYIVSHRDPVISVASHPAKN  241 (262)
Q Consensus       174 ------------~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~  241 (262)
                                  +++..+++...++.|.+|+............                      +...+.+++++|++.
T Consensus       189 ~~~~~p~~i~~d~~g~l~v~~~~~~~v~~~~~~~~~~~~~~~~----------------------~~~~p~~i~~~~~g~  246 (270)
T 1rwi_B          189 TDITAPWGIAVDEAGTVYVTEHNTNQVVKLLAGSTTSTVLPFT----------------------GLNTPLAVAVDSDRT  246 (270)
T ss_dssp             SSCCSEEEEEECTTCCEEEEETTTSCEEEECTTCSCCEECCCC----------------------SCSCEEEEEECTTCC
T ss_pred             cCCCCceEEEECCCCCEEEEECCCCcEEEEcCCCCcceeeccC----------------------CCCCceeEEECCCCC
Confidence                        4566666666677888888765433221111                      335688999999999


Q ss_pred             eEEEeeecCCCcEEEEeecc
Q 042146          242 IIASGALDNDRTMKIWTQEK  261 (262)
Q Consensus       242 ~l~~~~~d~d~~i~iw~~~~  261 (262)
                      ++++..  .++.|+++++.+
T Consensus       247 l~v~~~--~~~~v~~~~~~~  264 (270)
T 1rwi_B          247 VYVADR--GNDRVVKLTSLE  264 (270)
T ss_dssp             EEEEEG--GGTEEEEECCCG
T ss_pred             EEEEEC--CCCEEEEEcCCC
Confidence            888877  789999999864

>2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus}

Probab=99.65  E-value=1.6e-14  Score=112.88  Aligned_cols=102  Identities=21%  Similarity=0.300  Sum_probs=73.1

Q ss_pred             CceEEEEEccCCCeEEEecCC---CeEEEeecCCCCCCCCCCCCCCccccCCccccccceeEEEEecCCCccceecccCC
Q 042146           24 RAVSYVKFSHDGRLLTSSSAE---KTLLTYSLSSISNFDSTPPSPLQKFTGHEQGISDLATIRLWDVPTATSLKTLIGHT  100 (262)
Q Consensus        24 ~~v~~~~~~~~~~~l~s~~~d---~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~i~v~d~~~~~~~~~~~~~~  100 (262)
                      ..+..++|+|||++|+.++.+   +...                                 |.+|++.+++....... .
T Consensus        59 ~~~~~~~~SpDg~~la~~~~~~~~~~~~---------------------------------l~~~~~~~g~~~~l~~~-~  104 (347)
T 2gop_A           59 ENATMPRISPDGKKIAFMRANEEKKVSE---------------------------------IWVADLETLSSKKILEA-K  104 (347)
T ss_dssp             ESCEEEEECTTSSEEEEEEEETTTTEEE---------------------------------EEEEETTTTEEEEEEEE-S
T ss_pred             ccCCCeEECCCCCEEEEEEeccCCCcce---------------------------------EEEEECCCCceEEEEcC-C
Confidence            467889999999999887653   2322                                 33556665554433332 3


Q ss_pred             cceEEEEEeCCCCEEEeecC---------------------------CCeEEEEECCCCeeeeeeecCCCCeeeEEEccC
Q 042146          101 NYVFCINFNPQSNRIVSDTF---------------------------NETIRIWDIKTGKCLKVLPAHSDPVTAIDFNRD  153 (262)
Q Consensus       101 ~~v~~~~~~~~~~~l~~~~~---------------------------dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~  153 (262)
                      . +..++|+|+++.|+.++.                           ...|.+||+.+++.+..+.. . .+..++|+|+
T Consensus       105 ~-~~~~~wspdg~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~l~~-~-~~~~~~~spd  181 (347)
T 2gop_A          105 N-IRSLEWNEDSRKLLIVGFKRREDEDFIFEDDVPAWFDDLGFFDGEKTTFWIFDTESEEVIEEFEK-P-RFSSGIWHRD  181 (347)
T ss_dssp             E-EEEEEECTTSSEEEEEEECCCC---------CCCC---------CEEEEEEEETTTTEEEEEEEE-E-TTCEEEEETT
T ss_pred             C-ccceeECCCCCEEEEEEccCCCcCCcEEEcccceeecCcccccCccceEEEEECCCCeEEeeecC-C-CcccccCCCC
Confidence            3 899999999998887763                           25799999998876455544 3 7889999999


Q ss_pred             CCEEEEEeCC
Q 042146          154 GTMIVTSSYD  163 (262)
Q Consensus       154 ~~~l~~~~~d  163 (262)
                      | +++++..+
T Consensus       182 g-~~~~~~~~  190 (347)
T 2gop_A          182 K-IVVNVPHR  190 (347)
T ss_dssp             E-EEEEEECC
T ss_pred             e-EEEEEecc
Confidence            9 77777654

>4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ...

Probab=99.65  E-value=1.2e-15  Score=130.86  Aligned_cols=140  Identities=12%  Similarity=0.148  Sum_probs=95.9

Q ss_pred             CCceeeec--ccccceecccCcCc-----eEEEEEccCCCeEEEecCCCeEEEeecCCCCCCCCCCCCCCccccCCcccc
Q 042146            4 DRSLESFR--PYTLTQTLNGHLRA-----VSYVKFSHDGRLLTSSSAEKTLLTYSLSSISNFDSTPPSPLQKFTGHEQGI   76 (262)
Q Consensus         4 d~~i~~~~--~~~~~~~~~~h~~~-----v~~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v   76 (262)
                      |++|+.|+  +.+....+.+|...     ...++|||||++|+.++.+++++-.                          
T Consensus        35 ~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Spdg~~l~~~~~~~~~~r~--------------------------   88 (740)
T 4a5s_A           35 ENNILVFNAEYGNSSVFLENSTFDEFGHSINDYSISPDGQFILLEYNYVKQWRH--------------------------   88 (740)
T ss_dssp             TTEEEEEETTTCCEEEEECTTTTTTCCSCCCEEEECTTSSEEEEEEEEEECSSS--------------------------
T ss_pred             CCcEEEEECCCCceEEEEechhhhhhcccccceEECCCCCEEEEEECCeeeEEE--------------------------
Confidence            67777775  34455566666533     2447899999999999876543211                          


Q ss_pred             ccceeEEEEecCCCccceecccCCcceEEEEEeCCCCEEEeecCCCeEEEEECCCCeeeeee-ecCCCCe----------
Q 042146           77 SDLATIRLWDVPTATSLKTLIGHTNYVFCINFNPQSNRIVSDTFNETIRIWDIKTGKCLKVL-PAHSDPV----------  145 (262)
Q Consensus        77 ~~~~~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~-~~~~~~v----------  145 (262)
                      ...+.+.+||+.+++.. .+..+...+...+|+|||+.|+.+. ++.|++||+.+++..+.. .++...+          
T Consensus        89 ~~~~~~~~~d~~~~~~~-~l~~~~~~~~~~~~SPdG~~la~~~-~~~i~~~~~~~~~~~~lt~~g~~~~~~~g~~~~v~~  166 (740)
T 4a5s_A           89 SYTASYDIYDLNKRQLI-TEERIPNNTQWVTWSPVGHKLAYVW-NNDIYVKIEPNLPSYRITWTGKEDIIYNGITDWVYE  166 (740)
T ss_dssp             CEEEEEEEEETTTTEEC-CSSCCCTTEEEEEECSSTTCEEEEE-TTEEEEESSTTSCCEECCSCCBTTTEEESBCCHHHH
T ss_pred             ccceEEEEEECCCCcEE-EcccCCCcceeeEECCCCCEEEEEE-CCeEEEEECCCCceEEEcCCCCccceecCccccccc
Confidence            11124678888877654 4566777899999999999999885 689999999887654321 2222222          


Q ss_pred             -------eeEEEccCCCEEEEEeCCCe-EEEEeC
Q 042146          146 -------TAIDFNRDGTMIVTSSYDGL-YRILDA  171 (262)
Q Consensus       146 -------~~~~~~~~~~~l~~~~~dg~-i~~~d~  171 (262)
                             ..+.|||||+.|+.++.|.+ +.+|++
T Consensus       167 ee~~~~~~~~~wSpDg~~la~~~~d~~~v~~~~~  200 (740)
T 4a5s_A          167 EEVFSAYSALWWSPNGTFLAYAQFNDTEVPLIEY  200 (740)
T ss_dssp             HHTSSSSBCEEECTTSSEEEEEEEECTTCCEEEE
T ss_pred             chhcCCCcceEECCCCCEEEEEEEcccCCceEEE
Confidence                   35899999999998875443 555554

>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}

Probab=99.64  E-value=2.6e-13  Score=102.55  Aligned_cols=164  Identities=14%  Similarity=0.099  Sum_probs=125.4

Q ss_pred             CCCCceeeec--ccccceecccCc-CceEEEEEccCCCeEEEecCCCeEEEeecCCCCCCCCCCCCCCccccCCcccccc
Q 042146            2 SSDRSLESFR--PYTLTQTLNGHL-RAVSYVKFSHDGRLLTSSSAEKTLLTYSLSSISNFDSTPPSPLQKFTGHEQGISD   78 (262)
Q Consensus         2 s~d~~i~~~~--~~~~~~~~~~h~-~~v~~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~   78 (262)
                      +.|+.|..++  +.+.+.++..+. ..+.++.++|+|++|++  .++.|..||.                          
T Consensus        12 ~~~~~v~~~d~~tG~~~w~~~~~~~~~~~~~~~~pdG~ilvs--~~~~V~~~d~--------------------------   63 (276)
T 3no2_A           12 SGWNKIAIINKDTKEIVWEYPLEKGWECNSVAATKAGEILFS--YSKGAKMITR--------------------------   63 (276)
T ss_dssp             TTCSEEEEEETTTTEEEEEEECCTTCCCCEEEECTTSCEEEE--CBSEEEEECT--------------------------
T ss_pred             CCCCEEEEEECCCCeEEEEeCCCccCCCcCeEECCCCCEEEe--CCCCEEEECC--------------------------
Confidence            3577777775  566777777665 47899999999998883  3566666644                          


Q ss_pred             ceeEEEEecCCCccceecccC-CcceEEEEEeCCCCEEEeecC-CCeEEEEECCCCeeeeeeec------CCCCeeeEEE
Q 042146           79 LATIRLWDVPTATSLKTLIGH-TNYVFCINFNPQSNRIVSDTF-NETIRIWDIKTGKCLKVLPA------HSDPVTAIDF  150 (262)
Q Consensus        79 ~~~i~v~d~~~~~~~~~~~~~-~~~v~~~~~~~~~~~l~~~~~-dg~i~vwd~~~~~~~~~~~~------~~~~v~~~~~  150 (262)
                                +++.+..+..+ ...+.++.+.|+|+++++.+. ++.|..+|. +++.+..+..      +......+++
T Consensus        64 ----------~G~~~W~~~~~~~~~~~~~~~~~dG~~lv~~~~~~~~v~~vd~-~Gk~l~~~~~~~~~~~~~~~~~~v~~  132 (276)
T 3no2_A           64 ----------DGRELWNIAAPAGCEMQTARILPDGNALVAWCGHPSTILEVNM-KGEVLSKTEFETGIERPHAQFRQINK  132 (276)
T ss_dssp             ----------TSCEEEEEECCTTCEEEEEEECTTSCEEEEEESTTEEEEEECT-TSCEEEEEEECCSCSSGGGSCSCCEE
T ss_pred             ----------CCCEEEEEcCCCCccccccEECCCCCEEEEecCCCCEEEEEeC-CCCEEEEEeccCCCCcccccccCceE
Confidence                      34444444433 246788999999999999877 778888885 6777766642      1124556778


Q ss_pred             ccCCCEEEEEeCCCeEEEEeCCC------------------CCccEEEEEcCCCeEEEEecCCCceeeEEec
Q 042146          151 NRDGTMIVTSSYDGLYRILDAST------------------PNGKFILVGTLDNTLRLWNYSTRKILKTYSG  204 (262)
Q Consensus       151 ~~~~~~l~~~~~dg~i~~~d~~~------------------~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~  204 (262)
                      .++|+++++...++.|..||...                  ++++.++++..++.|..+|..+|+.+.++..
T Consensus       133 ~~~G~~lv~~~~~~~v~~~d~~G~~~w~~~~~~~~~~~~~~~~g~~~v~~~~~~~v~~~d~~tG~~~w~~~~  204 (276)
T 3no2_A          133 NKKGNYLVPLFATSEVREIAPNGQLLNSVKLSGTPFSSAFLDNGDCLVACGDAHCFVQLNLESNRIVRRVNA  204 (276)
T ss_dssp             CTTSCEEEEETTTTEEEEECTTSCEEEEEECSSCCCEEEECTTSCEEEECBTTSEEEEECTTTCCEEEEEEG
T ss_pred             CCCCCEEEEecCCCEEEEECCCCCEEEEEECCCCccceeEcCCCCEEEEeCCCCeEEEEeCcCCcEEEEecC
Confidence            89999999999999999999765                  6888999998888999999999999999875

>2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus}

Probab=99.63  E-value=3.3e-14  Score=121.19  Aligned_cols=180  Identities=12%  Similarity=0.099  Sum_probs=119.4

Q ss_pred             cCcCceEEEEEccCCCeEE-----EecCCCeEEEeecCCCCCCCCCCCCCCccccCCccccccceeEEEEecCCCccc-e
Q 042146           21 GHLRAVSYVKFSHDGRLLT-----SSSAEKTLLTYSLSSISNFDSTPPSPLQKFTGHEQGISDLATIRLWDVPTATSL-K   94 (262)
Q Consensus        21 ~h~~~v~~~~~~~~~~~l~-----s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~i~v~d~~~~~~~-~   94 (262)
                      +|...+..++|||||++||     .|+.+..|++||++                                   +++.+ .
T Consensus       118 ~~~~~~~~~~~SPDG~~la~~~~~~G~~~~~i~v~dl~-----------------------------------tg~~~~~  162 (695)
T 2bkl_A          118 DGTVSLGTWAVSWDGKKVAFAQKPNAADEAVLHVIDVD-----------------------------------SGEWSKV  162 (695)
T ss_dssp             SSCEEEEEEEECTTSSEEEEEEEETTCSCCEEEEEETT-----------------------------------TCCBCSS
T ss_pred             CCCEEEEEEEECCCCCEEEEEECCCCCceEEEEEEECC-----------------------------------CCCCcCC
Confidence            4666799999999999998     44445666666554                                   44332 1


Q ss_pred             -ecccCCcceEEEEEeCCCCEEEeecCCCe-------------EEEEECCCCe----eeeeeecCCCCeeeEEEccCCCE
Q 042146           95 -TLIGHTNYVFCINFNPQSNRIVSDTFNET-------------IRIWDIKTGK----CLKVLPAHSDPVTAIDFNRDGTM  156 (262)
Q Consensus        95 -~~~~~~~~v~~~~~~~~~~~l~~~~~dg~-------------i~vwd~~~~~----~~~~~~~~~~~v~~~~~~~~~~~  156 (262)
                       .+...  ....++|+||++.|+.++.+..             |++|++.+++    .+.....+...+..+.|+|+|++
T Consensus       163 ~~~~~~--~~~~~~wspDg~~l~~~~~d~~~~~~~~~~~~~~~v~~~~l~t~~~~~~lv~~~~~~~~~~~~~~~SpDG~~  240 (695)
T 2bkl_A          163 DVIEGG--KYATPKWTPDSKGFYYEWLPTDPSIKVDERPGYTTIRYHTLGTEPSKDTVVHERTGDPTTFLQSDLSRDGKY  240 (695)
T ss_dssp             CCBSCC--TTCCCEECTTSSEEEEEECCCCTTSCGGGGGGGCEEEEEETTSCGGGCEEEECCCCCTTCEEEEEECTTSCC
T ss_pred             cccCcc--cccceEEecCCCEEEEEEecCCCCCccccCCCCCEEEEEECCCCchhceEEEecCCCCEEEEEEEECCCCCE
Confidence             11111  1257899999999998887765             9999998775    33333445567899999999999


Q ss_pred             EEEEeCCC----eEEEEeCCC------------------CCccEEEEEc---CCCeEEEEecCCCce--eeEEeccCCce
Q 042146          157 IVTSSYDG----LYRILDAST------------------PNGKFILVGT---LDNTLRLWNYSTRKI--LKTYSGYTNSK  209 (262)
Q Consensus       157 l~~~~~dg----~i~~~d~~~------------------~~~~~l~~~~---~dg~i~i~d~~~~~~--~~~~~~~~~~~  209 (262)
                      |+.++.++    .|.+++...                  +++.+++...   .++.|.+||+.+++.  ...+..+.   
T Consensus       241 l~~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~g~l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~~---  317 (695)
T 2bkl_A          241 LFVYILRGWSENDVYWKRPGEKDFRLLVKGVGAKYEVHAWKDRFYVLTDEGAPRQRVFEVDPAKPARASWKEIVPED---  317 (695)
T ss_dssp             EEEEEEETTTEEEEEEECTTCSSCEEEEECSSCCEEEEEETTEEEEEECTTCTTCEEEEEBTTBCSGGGCEEEECCC---
T ss_pred             EEEEEeCCCCceEEEEEcCCCCceEEeecCCCceEEEEecCCcEEEEECCCCCCCEEEEEeCCCCCccCCeEEecCC---
Confidence            88887666    677776543                  3444333333   246788888776542  12222110   


Q ss_pred             eEEEEEEecCCCeeEEccccceEEEEEcCCCCeEEEeeecCCCcEEEEeec
Q 042146          210 YCISSTFSVTNGKYIVSHRDPVISVASHPAKNIIASGALDNDRTMKIWTQE  260 (262)
Q Consensus       210 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~d~d~~i~iw~~~  260 (262)
                                       ....+..++|+ ++.++++..  .|+..+||.++
T Consensus       318 -----------------~~~~l~~~~~~-~~~lv~~~~--~dg~~~l~~~~  348 (695)
T 2bkl_A          318 -----------------SSASLLSVSIV-GGHLSLEYL--KDATSEVRVAT  348 (695)
T ss_dssp             -----------------SSCEEEEEEEE-TTEEEEEEE--ETTEEEEEEEE
T ss_pred             -----------------CCCeEEEEEEE-CCEEEEEEE--ECCEEEEEEEe
Confidence                             13457778888 667777777  78888888664

>3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633}

Probab=99.61  E-value=1.5e-15  Score=120.69  Aligned_cols=196  Identities=11%  Similarity=-0.008  Sum_probs=113.2

Q ss_pred             ccccceecccCcCc-----eEEEEEccCCCeEEEecCC-CeEEEeecCCCCCCCCCCCCCCccccCCccccccceeEEEE
Q 042146           12 PYTLTQTLNGHLRA-----VSYVKFSHDGRLLTSSSAE-KTLLTYSLSSISNFDSTPPSPLQKFTGHEQGISDLATIRLW   85 (262)
Q Consensus        12 ~~~~~~~~~~h~~~-----v~~~~~~~~~~~l~s~~~d-~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~i~v~   85 (262)
                      ....+..+..+...     +.+++|+|||++|+..... +...                                 |.+|
T Consensus        19 ~g~~~~~l~~~~~~~~~~~~~~~~~SpdG~~l~~~~~~~g~~~---------------------------------l~~~   65 (396)
T 3c5m_A           19 TQVKVTRLTPTDIICHRNYFYQKCFTQDGKKLLFAGDFDGNRN---------------------------------YYLL   65 (396)
T ss_dssp             TCCEEEECSCTTSCEECCCTTSCCBCTTSCEEEEEECTTSSCE---------------------------------EEEE
T ss_pred             CCcceEEEecCCCCccceeeecCcCCCCCCEEEEEEecCCCce---------------------------------EEEE
Confidence            33445555554433     7788999999998876543 3211                                 2344


Q ss_pred             ecCCCccceecccCCcceEEEEEeCCCCEEEeecCCCeEEEEECCCCeeeeeeecCCCCeee------------------
Q 042146           86 DVPTATSLKTLIGHTNYVFCINFNPQSNRIVSDTFNETIRIWDIKTGKCLKVLPAHSDPVTA------------------  147 (262)
Q Consensus        86 d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~------------------  147 (262)
                      |+.+++.......+......+.|+|++++|+.++.++.|++||+.+++.......+......                  
T Consensus        66 d~~~~~~~~l~~~~~~~~~~~~~spdg~~l~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~  145 (396)
T 3c5m_A           66 NLETQQAVQLTEGKGDNTFGGFISTDERAFFYVKNELNLMKVDLETLEEQVIYTVDEEWKGYGTWVANSDCTKLVGIEIL  145 (396)
T ss_dssp             ETTTTEEEECCCSSCBCTTTCEECTTSSEEEEEETTTEEEEEETTTCCEEEEEECCTTEEEEEEEEECTTSSEEEEEEEE
T ss_pred             ECCCCcEEEeecCCCCccccceECCCCCEEEEEEcCCcEEEEECCCCCcEEEEecccccCCCCCEEEeccCCcccccccc
Confidence            55554433322222222333789999999999988899999999988765555444432222                  


Q ss_pred             -EEEccCCCEEEEE-----eCCCeEEEEeCCC-------------------C-CccEEEEEcCC------CeEEEEecCC
Q 042146          148 -IDFNRDGTMIVTS-----SYDGLYRILDAST-------------------P-NGKFILVGTLD------NTLRLWNYST  195 (262)
Q Consensus       148 -~~~~~~~~~l~~~-----~~dg~i~~~d~~~-------------------~-~~~~l~~~~~d------g~i~i~d~~~  195 (262)
                       +.|+|+++.++.+     ..+..|.+||+..                   | ++..|+..+.+      ..|.+||+..
T Consensus       146 ~~~~spdg~~~~~~~~~~~~~~~~l~~~d~~~g~~~~~~~~~~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~  225 (396)
T 3c5m_A          146 KRDWQPLTSWEKFAEFYHTNPTCRLIKVDIETGELEVIHQDTAWLGHPIYRPFDDSTVGFCHEGPHDLVDARMWLVNEDG  225 (396)
T ss_dssp             GGGCCCCCSHHHHHHHHHTCCCEEEEEEETTTCCEEEEEEESSCEEEEEEETTEEEEEEEEECSCSSSCSCCCEEEETTS
T ss_pred             ccccCCCCcceeeeeeccCCCcceEEEEECCCCcEEeeccCCcccccceECCCCCCEEEEEecCCCCCCCceEEEEECCC
Confidence             2456666655443     3455677777654                   3 44444443322      2355555543


Q ss_pred             CceeeEEeccCCceeEEEEEEecCCCeeEEccccceEEEEEcCCCCeEEEeeec-CC--CcEEEEeecc
Q 042146          196 RKILKTYSGYTNSKYCISSTFSVTNGKYIVSHRDPVISVASHPAKNIIASGALD-ND--RTMKIWTQEK  261 (262)
Q Consensus       196 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~d-~d--~~i~iw~~~~  261 (262)
                      ++....... .                    ....+..++|+|+++.|+.++.+ ..  +.|++|++..
T Consensus       226 ~~~~~l~~~-~--------------------~~~~~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~  273 (396)
T 3c5m_A          226 SNVRKIKEH-A--------------------EGESCTHEFWIPDGSAMAYVSYFKGQTDRVIYKANPET  273 (396)
T ss_dssp             CCCEESSCC-C--------------------TTEEEEEEEECTTSSCEEEEEEETTTCCEEEEEECTTT
T ss_pred             CceeEeecc-C--------------------CCccccceEECCCCCEEEEEecCCCCccceEEEEECCC
Confidence            332111110 0                    12357789999999988777621 11  3499998753

>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans}

Probab=99.60  E-value=6.5e-13  Score=101.47  Aligned_cols=184  Identities=8%  Similarity=-0.014  Sum_probs=126.4

Q ss_pred             CCceeeecccccceecccCcCceEEEEEccCCCeEEEecCCCeEEEeecCCCCCCCCCCCCCCccccCCccccccceeEE
Q 042146            4 DRSLESFRPYTLTQTLNGHLRAVSYVKFSHDGRLLTSSSAEKTLLTYSLSSISNFDSTPPSPLQKFTGHEQGISDLATIR   83 (262)
Q Consensus         4 d~~i~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~i~   83 (262)
                      ++.|..|.+..-...+..+...+.+++++|+|+++++...++.|.+||..+                             
T Consensus        49 ~~~i~~~~~~~~~~~~~~~~~~~~~l~~~~dg~l~v~~~~~~~i~~~d~~~-----------------------------   99 (296)
T 3e5z_A           49 QNRTWAWSDDGQLSPEMHPSHHQNGHCLNKQGHLIACSHGLRRLERQREPG-----------------------------   99 (296)
T ss_dssp             GTEEEEEETTSCEEEEESSCSSEEEEEECTTCCEEEEETTTTEEEEECSTT-----------------------------
T ss_pred             CCEEEEEECCCCeEEEECCCCCcceeeECCCCcEEEEecCCCeEEEEcCCC-----------------------------
Confidence            455666654333556666778899999999999888877778888886532                             


Q ss_pred             EEecCCCccceec---c-cCCcceEEEEEeCCCCEEEe----ec-------------CCCeEEEEECCCCeeeeeeecCC
Q 042146           84 LWDVPTATSLKTL---I-GHTNYVFCINFNPQSNRIVS----DT-------------FNETIRIWDIKTGKCLKVLPAHS  142 (262)
Q Consensus        84 v~d~~~~~~~~~~---~-~~~~~v~~~~~~~~~~~l~~----~~-------------~dg~i~vwd~~~~~~~~~~~~~~  142 (262)
                            ++.....   . .....+..++++|+|+++++    |+             ..+.|..++.. ++. ..+..+.
T Consensus       100 ------g~~~~~~~~~~~~~~~~~~~i~~d~~G~l~vtd~~~g~~~~~~~~~~~~~~~~~~l~~~~~~-g~~-~~~~~~~  171 (296)
T 3e5z_A          100 ------GEWESIADSFEGKKLNSPNDVCLAPDGSLWFSDPTYGIDKPEEGYGGEMELPGRWVFRLAPD-GTL-SAPIRDR  171 (296)
T ss_dssp             ------CCEEEEECEETTEECCCCCCEEECTTSCEEEEECSHHHHCGGGSSCCCCCSSSCEEEEECTT-SCE-EEEECCC
T ss_pred             ------CcEEEEeeccCCCCCCCCCCEEECCCCCEEEECCccccccccccccccccCCCcEEEEECCC-CCE-EEeecCC
Confidence                  1111110   0 11234667999999998887    33             13467777765 443 3444556


Q ss_pred             CCeeeEEEccCCCEEEEEeCCCeEEEEeCCC------------------------CCccEEEEEcCCCeEEEEecCCCce
Q 042146          143 DPVTAIDFNRDGTMIVTSSYDGLYRILDAST------------------------PNGKFILVGTLDNTLRLWNYSTRKI  198 (262)
Q Consensus       143 ~~v~~~~~~~~~~~l~~~~~dg~i~~~d~~~------------------------~~~~~l~~~~~dg~i~i~d~~~~~~  198 (262)
                      .....++|+|+++.+++.+.++.|.+|++..                        ++++++++.  ++.|.+||.. ++.
T Consensus       172 ~~~~gi~~s~dg~~lv~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~p~~i~~d~~G~l~v~~--~~~v~~~~~~-g~~  248 (296)
T 3e5z_A          172 VKPNGLAFLPSGNLLVSDTGDNATHRYCLNARGETEYQGVHFTVEPGKTDGLRVDAGGLIWASA--GDGVHVLTPD-GDE  248 (296)
T ss_dssp             SSEEEEEECTTSCEEEEETTTTEEEEEEECSSSCEEEEEEEECCSSSCCCSEEEBTTSCEEEEE--TTEEEEECTT-SCE
T ss_pred             CCCccEEECCCCCEEEEeCCCCeEEEEEECCCCcCcCCCeEeeCCCCCCCeEEECCCCCEEEEc--CCeEEEECCC-CCE
Confidence            6779999999999887777889999998641                        455544444  6788889876 777


Q ss_pred             eeEEeccCCceeEEEEEEecCCCeeEEccccceEEEEE-cCCCCeEEEeeecCCC
Q 042146          199 LKTYSGYTNSKYCISSTFSVTNGKYIVSHRDPVISVAS-HPAKNIIASGALDNDR  252 (262)
Q Consensus       199 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~-~p~~~~l~~~~~d~d~  252 (262)
                      +..+..                      +.. +.+++| .|+++.|++++  .++
T Consensus       249 ~~~~~~----------------------~~~-~~~~~f~~~d~~~L~v~t--~~~  278 (296)
T 3e5z_A          249 LGRVLT----------------------PQT-TSNLCFGGPEGRTLYMTV--STE  278 (296)
T ss_dssp             EEEEEC----------------------SSC-CCEEEEESTTSCEEEEEE--TTE
T ss_pred             EEEEEC----------------------CCC-ceeEEEECCCCCEEEEEc--CCe
Confidence            766664                      445 888999 68999888887  553

>2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A

Probab=99.60  E-value=5.4e-14  Score=109.24  Aligned_cols=175  Identities=15%  Similarity=0.122  Sum_probs=117.7

Q ss_pred             CceEEEEEccCCCeEEEecCCCeEEEeecCCCCCCCCCCCCCCccccCCccccccceeEEEEecCCCccceecccCCcce
Q 042146           24 RAVSYVKFSHDGRLLTSSSAEKTLLTYSLSSISNFDSTPPSPLQKFTGHEQGISDLATIRLWDVPTATSLKTLIGHTNYV  103 (262)
Q Consensus        24 ~~v~~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~i~v~d~~~~~~~~~~~~~~~~v  103 (262)
                      ..|.++.|++++..++..+.++.++.|                                      .++....+..+...+
T Consensus         6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------------------------------~~~~~~~~~~~~~~~   47 (333)
T 2dg1_A            6 QDLPTLFYSGKSNSAVPIISESELQTI--------------------------------------TAEPWLEISKKGLQL   47 (333)
T ss_dssp             CCCCBCCSCGGGGCSSCCCCGGGSCEE--------------------------------------ECEEEEEEESSCCCE
T ss_pred             cccceeeecCCccceeEEeecccCccc--------------------------------------ccceeEEEeccCccc
Confidence            446777888887777666667766666                                      123333444555667


Q ss_pred             EEEEEeCCCCEEEeecCCCeEEEEECCCCeeeeeeecCCCCeeeEEEccCCCEEEEEeCC----CeEEEEeCCC------
Q 042146          104 FCINFNPQSNRIVSDTFNETIRIWDIKTGKCLKVLPAHSDPVTAIDFNRDGTMIVTSSYD----GLYRILDAST------  173 (262)
Q Consensus       104 ~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d----g~i~~~d~~~------  173 (262)
                      .+++|+|++++++++..++.|.+||..+++.......+...+.+++++|+++++++...+    +.|.+||...      
T Consensus        48 ~~~~~~~~g~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~i~~~~dg~l~v~~~~~~~~~~~i~~~d~~~~~~~~~  127 (333)
T 2dg1_A           48 EGLNFDRQGQLFLLDVFEGNIFKINPETKEIKRPFVSHKANPAAIKIHKDGRLFVCYLGDFKSTGGIFAATENGDNLQDI  127 (333)
T ss_dssp             EEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECSSSSEEEEEECTTSCEEEEECTTSSSCCEEEEECTTSCSCEEE
T ss_pred             cCcEECCCCCEEEEECCCCEEEEEeCCCCcEEEEeeCCCCCcceEEECCCCcEEEEeCCCCCCCceEEEEeCCCCEEEEE
Confidence            899999999988888889999999998887655444566789999999999888777666    6899998654      


Q ss_pred             ----------------CCccEEEEEcC------CCeEEEEecCCCceeeEEeccCCceeEEEEEEecCCCeeEEccccce
Q 042146          174 ----------------PNGKFILVGTL------DNTLRLWNYSTRKILKTYSGYTNSKYCISSTFSVTNGKYIVSHRDPV  231 (262)
Q Consensus       174 ----------------~~~~~l~~~~~------dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v  231 (262)
                                      ++++++++...      .+.|..+|..+++......                       ....+
T Consensus       128 ~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~~~~~~~l~~~~~~~~~~~~~~~-----------------------~~~~~  184 (333)
T 2dg1_A          128 IEDLSTAYCIDDMVFDSKGGFYFTDFRGYSTNPLGGVYYVSPDFRTVTPIIQ-----------------------NISVA  184 (333)
T ss_dssp             ECSSSSCCCEEEEEECTTSCEEEEECCCBTTBCCEEEEEECTTSCCEEEEEE-----------------------EESSE
T ss_pred             EccCccCCcccceEECCCCCEEEEeccccccCCCceEEEEeCCCCEEEEeec-----------------------CCCcc
Confidence                            33333333322      1334444433332221111                       33457


Q ss_pred             EEEEEcCCCCeEEEeeecCCCcEEEEeec
Q 042146          232 ISVASHPAKNIIASGALDNDRTMKIWTQE  260 (262)
Q Consensus       232 ~~~~~~p~~~~l~~~~~d~d~~i~iw~~~  260 (262)
                      ..++|+|+++.|+.+.. .++.|.+|+++
T Consensus       185 ~~i~~~~dg~~l~v~~~-~~~~i~~~d~~  212 (333)
T 2dg1_A          185 NGIALSTDEKVLWVTET-TANRLHRIALE  212 (333)
T ss_dssp             EEEEECTTSSEEEEEEG-GGTEEEEEEEC
T ss_pred             cceEECCCCCEEEEEeC-CCCeEEEEEec
Confidence            88999999986654432 47899999984

>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans}

Probab=99.60  E-value=5.7e-13  Score=101.80  Aligned_cols=184  Identities=11%  Similarity=0.068  Sum_probs=127.8

Q ss_pred             ccceecccCcCceEEEEEccCCC-eEEEecCCCeEEEeecCCCCCCCCCCCCCCccccCCccccccceeEEEEecCCCcc
Q 042146           14 TLTQTLNGHLRAVSYVKFSHDGR-LLTSSSAEKTLLTYSLSSISNFDSTPPSPLQKFTGHEQGISDLATIRLWDVPTATS   92 (262)
Q Consensus        14 ~~~~~~~~h~~~v~~~~~~~~~~-~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~i~v~d~~~~~~   92 (262)
                      ..+..+..+.....+++|+|+++ +++++..++.|..|+.+.                                   +  
T Consensus        18 ~~~~~l~~~~~~~eg~~~d~~g~~l~~~~~~~~~i~~~~~~~-----------------------------------~--   60 (296)
T 3e5z_A           18 AEARRLADGFTWTEGPVYVPARSAVIFSDVRQNRTWAWSDDG-----------------------------------Q--   60 (296)
T ss_dssp             CCCEEEECCCSSEEEEEEEGGGTEEEEEEGGGTEEEEEETTS-----------------------------------C--
T ss_pred             CcEEEEecCCccccCCeEeCCCCEEEEEeCCCCEEEEEECCC-----------------------------------C--
Confidence            34455556677789999999998 788888888888886532                                   2  


Q ss_pred             ceecccCCcceEEEEEeCCCCEEEeecCCCeEEEEECCCCeeeeeeecC----CCCeeeEEEccCCCEEEEE----e---
Q 042146           93 LKTLIGHTNYVFCINFNPQSNRIVSDTFNETIRIWDIKTGKCLKVLPAH----SDPVTAIDFNRDGTMIVTS----S---  161 (262)
Q Consensus        93 ~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~----~~~v~~~~~~~~~~~l~~~----~---  161 (262)
                      ...+..+...+.+++++|+++++++...++.|.+||..+++........    ...+..++++|+|+++++.    +   
T Consensus        61 ~~~~~~~~~~~~~l~~~~dg~l~v~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~i~~d~~G~l~vtd~~~g~~~~  140 (296)
T 3e5z_A           61 LSPEMHPSHHQNGHCLNKQGHLIACSHGLRRLERQREPGGEWESIADSFEGKKLNSPNDVCLAPDGSLWFSDPTYGIDKP  140 (296)
T ss_dssp             EEEEESSCSSEEEEEECTTCCEEEEETTTTEEEEECSTTCCEEEEECEETTEECCCCCCEEECTTSCEEEEECSHHHHCG
T ss_pred             eEEEECCCCCcceeeECCCCcEEEEecCCCeEEEEcCCCCcEEEEeeccCCCCCCCCCCEEECCCCCEEEECCccccccc
Confidence            3333345567899999999998888877889999999877754333221    2356789999999988873    2   


Q ss_pred             ----------CCCeEEEEeCCC------------------CCccEEEEEcCCCeEEEEecC-CCce---eeEEeccCCce
Q 042146          162 ----------YDGLYRILDAST------------------PNGKFILVGTLDNTLRLWNYS-TRKI---LKTYSGYTNSK  209 (262)
Q Consensus       162 ----------~dg~i~~~d~~~------------------~~~~~l~~~~~dg~i~i~d~~-~~~~---~~~~~~~~~~~  209 (262)
                                ..+.|..++...                  ++++.+++.+.++.|++|++. +++.   ...+..     
T Consensus       141 ~~~~~~~~~~~~~~l~~~~~~g~~~~~~~~~~~~~gi~~s~dg~~lv~~~~~~~i~~~~~~~~g~~~~~~~~~~~-----  215 (296)
T 3e5z_A          141 EEGYGGEMELPGRWVFRLAPDGTLSAPIRDRVKPNGLAFLPSGNLLVSDTGDNATHRYCLNARGETEYQGVHFTV-----  215 (296)
T ss_dssp             GGSSCCCCCSSSCEEEEECTTSCEEEEECCCSSEEEEEECTTSCEEEEETTTTEEEEEEECSSSCEEEEEEEECC-----
T ss_pred             cccccccccCCCcEEEEECCCCCEEEeecCCCCCccEEECCCCCEEEEeCCCCeEEEEEECCCCcCcCCCeEeeC-----
Confidence                      134666666532                  678888777888999999986 4544   222211     


Q ss_pred             eEEEEEEecCCCeeEEccccceEEEEEcCCCCeEEEeeecCCCcEEEEeec
Q 042146          210 YCISSTFSVTNGKYIVSHRDPVISVASHPAKNIIASGALDNDRTMKIWTQE  260 (262)
Q Consensus       210 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~d~d~~i~iw~~~  260 (262)
                                       +...+..++++++|+++++.    ++.|.+|+.+
T Consensus       216 -----------------~~~~p~~i~~d~~G~l~v~~----~~~v~~~~~~  245 (296)
T 3e5z_A          216 -----------------EPGKTDGLRVDAGGLIWASA----GDGVHVLTPD  245 (296)
T ss_dssp             -----------------SSSCCCSEEEBTTSCEEEEE----TTEEEEECTT
T ss_pred             -----------------CCCCCCeEEECCCCCEEEEc----CCeEEEECCC
Confidence                             33445667888888765554    3567777754

>2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A*

Probab=99.58  E-value=1.9e-13  Score=116.84  Aligned_cols=181  Identities=14%  Similarity=0.175  Sum_probs=114.0

Q ss_pred             cCcCceEEEEEccCCCeEEEecCCC-eEEEeecCCCCCCCCCCCCCCccccCCccccccceeEEEEecCCCccceecccC
Q 042146           21 GHLRAVSYVKFSHDGRLLTSSSAEK-TLLTYSLSSISNFDSTPPSPLQKFTGHEQGISDLATIRLWDVPTATSLKTLIGH   99 (262)
Q Consensus        21 ~h~~~v~~~~~~~~~~~l~s~~~d~-~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~i~v~d~~~~~~~~~~~~~   99 (262)
                      +|...+..++|||||++||.++.++ .                               ....|++||+.+++.......+
T Consensus       122 ~~~~~~~~~~~SPDg~~la~~~~~~G~-------------------------------~~~~i~v~d~~tg~~~~~~~~~  170 (710)
T 2xdw_A          122 DGTVALRGYAFSEDGEYFAYGLSASGS-------------------------------DWVTIKFMKVDGAKELPDVLER  170 (710)
T ss_dssp             TSCEEEEEEEECTTSSEEEEEEEETTC-------------------------------SCEEEEEEETTTTEEEEEEEEE
T ss_pred             CCCEEEEEEEECCCCCEEEEEEcCCCC-------------------------------ceEEEEEEECCCCCCCcccccC
Confidence            3545688999999999998775432 0                               0002445555555544322211


Q ss_pred             CcceEEEEEeCCCCEEEeecCCCe----------------EEEEECCCCee----eeeeecCCCCeeeEEEccCCCEEEE
Q 042146          100 TNYVFCINFNPQSNRIVSDTFNET----------------IRIWDIKTGKC----LKVLPAHSDPVTAIDFNRDGTMIVT  159 (262)
Q Consensus       100 ~~~v~~~~~~~~~~~l~~~~~dg~----------------i~vwd~~~~~~----~~~~~~~~~~v~~~~~~~~~~~l~~  159 (262)
                       ..+..++|+||++.|+.++.++.                |++|++.+++.    +.....|...+..+.|+|+|++|+.
T Consensus       171 -~~~~~~~wspDg~~l~~~~~~~~~~~~~~~~~~~~~~~~v~~~~l~t~~~~~~~v~~~~~~~~~~~~~~~SpDg~~l~~  249 (710)
T 2xdw_A          171 -VKFSCMAWTHDGKGMFYNAYPQQDGKSDGTETSTNLHQKLYYHVLGTDQSEDILCAEFPDEPKWMGGAELSDDGRYVLL  249 (710)
T ss_dssp             -ECSCCEEECTTSSEEEEEECCCCSSCCSSSCCCCCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECTTSCEEEE
T ss_pred             -cccceEEEEeCCCEEEEEEECCccccccccccccCCCCEEEEEECCCCcccceEEeccCCCCeEEEEEEEcCCCCEEEE
Confidence             22567999999999988877765                99999987652    2222234556789999999998887


Q ss_pred             EeC-----CCeEEEEeCCC--------------------------CCccEEEEEcC----CCeEEEEecCCCce--eeEE
Q 042146          160 SSY-----DGLYRILDAST--------------------------PNGKFILVGTL----DNTLRLWNYSTRKI--LKTY  202 (262)
Q Consensus       160 ~~~-----dg~i~~~d~~~--------------------------~~~~~l~~~~~----dg~i~i~d~~~~~~--~~~~  202 (262)
                      ++.     +..|.+||+..                          ++++.|+..+.    .+.|.+||+.++..  ...+
T Consensus       250 ~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~l~~~~~~~~~~~s~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l  329 (710)
T 2xdw_A          250 SIREGCDPVNRLWYCDLQQESNGITGILKWVKLIDNFEGEYDYVTNEGTVFTFKTNRHSPNYRLINIDFTDPEESKWKVL  329 (710)
T ss_dssp             EEECSSSSCCEEEEEEGGGSSSSSCSSCCCEEEECSSSSCEEEEEEETTEEEEEECTTCTTCEEEEEETTSCCGGGCEEE
T ss_pred             EEEccCCCccEEEEEECcccccccCCccceEEeeCCCCcEEEEEeccCCEEEEEECCCCCCCEEEEEeCCCCCcccceec
Confidence            764     56899999753                          22333333322    12456666554421  1222


Q ss_pred             eccCCceeEEEEEEecCCCeeEEcccc--ceEEEEEcCCCCeEEEeeecCCCcEEEE
Q 042146          203 SGYTNSKYCISSTFSVTNGKYIVSHRD--PVISVASHPAKNIIASGALDNDRTMKIW  257 (262)
Q Consensus       203 ~~~~~~~~~~~~~~~~~~~~~~~~~~~--~v~~~~~~p~~~~l~~~~~d~d~~i~iw  257 (262)
                      .                      .+..  .+..++|++++.++++..  .|+..+||
T Consensus       330 ~----------------------~~~~~~~~~~~~~~~~~~lv~~~~--~~g~~~l~  362 (710)
T 2xdw_A          330 V----------------------PEHEKDVLEWVACVRSNFLVLCYL--HDVKNTLQ  362 (710)
T ss_dssp             E----------------------CCCSSCEEEEEEEETTTEEEEEEE--ETTEEEEE
T ss_pred             c----------------------CCCCCCeEEEEEEEcCCEEEEEEE--ECCEEEEE
Confidence            2                      2333  577888888888888887  67755444

>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A

Probab=99.57  E-value=1.7e-12  Score=97.70  Aligned_cols=177  Identities=10%  Similarity=0.030  Sum_probs=121.4

Q ss_pred             ceEEEEEccCCCeEE-EecCCCeEEEeecCCCCCCCCCCCCCCccccCCccccccceeEEEEecCCCccceecccCCcce
Q 042146           25 AVSYVKFSHDGRLLT-SSSAEKTLLTYSLSSISNFDSTPPSPLQKFTGHEQGISDLATIRLWDVPTATSLKTLIGHTNYV  103 (262)
Q Consensus        25 ~v~~~~~~~~~~~l~-s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~i~v~d~~~~~~~~~~~~~~~~v  103 (262)
                      ...++++++++++++ +.+.++.|.+|+....                                   ........+...+
T Consensus        25 ~p~~i~~~~~g~l~v~~~~~~~~i~~~~~~~~-----------------------------------~~~~~~~~~~~~p   69 (270)
T 1rwi_B           25 SPSGVAVDSAGNVYVTSEGMYGRVVKLATGST-----------------------------------GTTVLPFNGLYQP   69 (270)
T ss_dssp             CEEEEEECTTCCEEEEECSSSCEEEEECC----------------------------------------EECCCCSCCSC
T ss_pred             CccceEECCCCCEEEEccCCCCcEEEecCCCc-----------------------------------ccceEeeCCcCCc
Confidence            678999999999777 5477888888864321                                   1000001122456


Q ss_pred             EEEEEeCCCCEEEeecCCCeEEEEECCCCeeeeeeecCCCCeeeEEEccCCCEEEEEeCCCeEEEEeCCC----------
Q 042146          104 FCINFNPQSNRIVSDTFNETIRIWDIKTGKCLKVLPAHSDPVTAIDFNRDGTMIVTSSYDGLYRILDAST----------  173 (262)
Q Consensus       104 ~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~d~~~----------  173 (262)
                      .+++++++++++++.. ++.|.+||................+..++++|+++++++...++.|.+|+...          
T Consensus        70 ~~i~~~~~g~l~v~~~-~~~i~~~d~~~~~~~~~~~~~~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~~~~~~~~~~~~  148 (270)
T 1rwi_B           70 QGLAVDGAGTVYVTDF-NNRVVTLAAGSNNQTVLPFDGLNYPEGLAVDTQGAVYVADRGNNRVVKLAAGSKTQTVLPFTG  148 (270)
T ss_dssp             CCEEECTTCCEEEEET-TTEEEEECTTCSCCEECCCCSCSSEEEEEECTTCCEEEEEGGGTEEEEECTTCCSCEECCCCS
T ss_pred             ceeEECCCCCEEEEcC-CCEEEEEeCCCceEeeeecCCcCCCcceEECCCCCEEEEECCCCEEEEEECCCceeEeecccc
Confidence            7899999999777666 88999999876543322222335689999999999777777888999998544          


Q ss_pred             ----------CCccEEEEEcCCCeEEEEecCCCceeeEEeccCCceeEEEEEEecCCCeeEEccccceEEEEEcCCCCeE
Q 042146          174 ----------PNGKFILVGTLDNTLRLWNYSTRKILKTYSGYTNSKYCISSTFSVTNGKYIVSHRDPVISVASHPAKNII  243 (262)
Q Consensus       174 ----------~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l  243 (262)
                                ++++++++...++.|.+||............                      +...+..++++|++.++
T Consensus       149 ~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~~~~~~~~~~~----------------------~~~~p~~i~~d~~g~l~  206 (270)
T 1rwi_B          149 LNDPDGVAVDNSGNVYVTDTDNNRVVKLEAESNNQVVLPFT----------------------DITAPWGIAVDEAGTVY  206 (270)
T ss_dssp             CCSCCCEEECTTCCEEEEEGGGTEEEEECTTTCCEEECCCS----------------------SCCSEEEEEECTTCCEE
T ss_pred             CCCceeEEEeCCCCEEEEECCCCEEEEEecCCCceEeeccc----------------------CCCCceEEEECCCCCEE
Confidence                      5667666666678888888776543322111                      22567889999999777


Q ss_pred             EEeeecCCCcEEEEeecc
Q 042146          244 ASGALDNDRTMKIWTQEK  261 (262)
Q Consensus       244 ~~~~~d~d~~i~iw~~~~  261 (262)
                      ++..  .++.|.+|+.+.
T Consensus       207 v~~~--~~~~v~~~~~~~  222 (270)
T 1rwi_B          207 VTEH--NTNQVVKLLAGS  222 (270)
T ss_dssp             EEET--TTSCEEEECTTC
T ss_pred             EEEC--CCCcEEEEcCCC
Confidence            7766  678899998753

>1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1

Probab=99.55  E-value=7.7e-13  Score=104.17  Aligned_cols=138  Identities=12%  Similarity=0.160  Sum_probs=100.3

Q ss_pred             cceEEEEEeCCCCEEEeecCCCeEEEEECC-CCeeeeeeecC-CCCeeeEEEccCCCE--EEEEe-------------CC
Q 042146          101 NYVFCINFNPQSNRIVSDTFNETIRIWDIK-TGKCLKVLPAH-SDPVTAIDFNRDGTM--IVTSS-------------YD  163 (262)
Q Consensus       101 ~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~-~~~~~~~~~~~-~~~v~~~~~~~~~~~--l~~~~-------------~d  163 (262)
                      ..+..++|+|++++|++++.+ .|.+|++. +++........ .+....++|+|+|+.  ++++.             .+
T Consensus        40 ~~~~~~a~spdg~~l~~~~~~-~v~~~~~~~~g~~~~~~~~~~~g~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~~  118 (365)
T 1jof_A           40 EPISWMTFDHERKNIYGAAMK-KWSSFAVKSPTEIVHEASHPIGGHPRANDADTNTRAIFLLAAKQPPYAVYANPFYKFA  118 (365)
T ss_dssp             CCCSEEEECTTSSEEEEEEBT-EEEEEEEEETTEEEEEEEEECCSSGGGGCTTSCCEEEEEEECSSTTCCEEEEEESSSC
T ss_pred             CCCcEEEECCCCCEEEEEccc-eEEEEEECCCCCEEEeeEeecCCCCccEEECCCCCEEEEEEecCCcceeccceeecCC
Confidence            457789999999999988877 99999997 77665433211 134677999999994  44553             68


Q ss_pred             CeEEEEeCCC-------------------------CCccEEEEEc-CCCeEEEEecC-CCceee--EEeccCCceeEEEE
Q 042146          164 GLYRILDAST-------------------------PNGKFILVGT-LDNTLRLWNYS-TRKILK--TYSGYTNSKYCISS  214 (262)
Q Consensus       164 g~i~~~d~~~-------------------------~~~~~l~~~~-~dg~i~i~d~~-~~~~~~--~~~~~~~~~~~~~~  214 (262)
                      +.+.+|++..                         |+++++++++ .++.|++||+. +++...  .+...         
T Consensus       119 g~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~~~spdG~~l~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~---------  189 (365)
T 1jof_A          119 GYGNVFSVSETGKLEKNVQNYEYQENTGIHGMVFDPTETYLYSADLTANKLWTHRKLASGEVELVGSVDAP---------  189 (365)
T ss_dssp             CEEEEEEECTTCCEEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCEEEEEEEECS---------
T ss_pred             ceEEEEccCCCCcCcceEeeEEeCCCCcceEEEECCCCCEEEEEcCCCCEEEEEEECCCCCEEEeeeEecC---------
Confidence            9999998742                         6788777665 46789999998 666432  22110         


Q ss_pred             EEecCCCeeEEccccceEEEEEcCCCCeEEEeeecCCCcEEEEeec
Q 042146          215 TFSVTNGKYIVSHRDPVISVASHPAKNIIASGALDNDRTMKIWTQE  260 (262)
Q Consensus       215 ~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~d~d~~i~iw~~~  260 (262)
                                 .+...+..++|+|++++|++++. .++.|.+|+++
T Consensus       190 -----------~~g~~p~~~~~spdg~~l~v~~~-~~~~v~v~~~~  223 (365)
T 1jof_A          190 -----------DPGDHPRWVAMHPTGNYLYALME-AGNRICEYVID  223 (365)
T ss_dssp             -----------STTCCEEEEEECTTSSEEEEEET-TTTEEEEEEEC
T ss_pred             -----------CCCCCCCEeEECCCCCEEEEEEC-CCCeEEEEEEe
Confidence                       03456889999999999988773 36899999875

>1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C*

Probab=99.54  E-value=6e-13  Score=104.41  Aligned_cols=176  Identities=12%  Similarity=0.143  Sum_probs=123.5

Q ss_pred             ceEEEEEccCCCeEEEecCCCeEEEeecCCCCCCCCCCCCCCccccCCccccccceeEEEEecCCCccceecccCCcceE
Q 042146           25 AVSYVKFSHDGRLLTSSSAEKTLLTYSLSSISNFDSTPPSPLQKFTGHEQGISDLATIRLWDVPTATSLKTLIGHTNYVF  104 (262)
Q Consensus        25 ~v~~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~i~v~d~~~~~~~~~~~~~~~~v~  104 (262)
                      +++.+++++...++++|+.++ +++|+++..........                        ..-+..... .+.. |+
T Consensus        39 ~~nlLais~~~gll~a~~~~~-l~v~~~~~l~~~~~~~~------------------------~~~~~~~~~-~lp~-V~   91 (388)
T 1xip_A           39 SLQNLDISNSKSLFVAASGSK-AVVGELQLLRDHITSDS------------------------TPLTFKWEK-EIPD-VI   91 (388)
T ss_dssp             CCBCEEEETTTTEEEEEETTE-EEEEEHHHHHHHHHSSS------------------------CCCCCSEEE-ECTT-EE
T ss_pred             cccEEEEcCCCCEEEEeCCCE-EEEEEhhHhhhhhcccc------------------------ccccceEEe-eCCC-ee
Confidence            699999999999999999874 55587654221000000                        000111112 2445 99


Q ss_pred             EEEEeCCCCEEEeecCCCeEEEEECCCCeeeeeeecCCCCeeeEEEccCCCEEEEEeCCCeEEEEeCCC-----------
Q 042146          105 CINFNPQSNRIVSDTFNETIRIWDIKTGKCLKVLPAHSDPVTAIDFNRDGTMIVTSSYDGLYRILDAST-----------  173 (262)
Q Consensus       105 ~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~d~~~-----------  173 (262)
                      .++|  ++++|+++ .++.|++||+++.........|..++.++.+.+.  .++++..||.|.+||+..           
T Consensus        92 ~l~f--d~~~L~v~-~~~~l~v~dv~sl~~~~~~~~~~~~v~~i~~~~p--~~av~~~dG~L~v~dl~~~~~~~~~~~Vs  166 (388)
T 1xip_A           92 FVCF--HGDQVLVS-TRNALYSLDLEELSEFRTVTSFEKPVFQLKNVNN--TLVILNSVNDLSALDLRTKSTKQLAQNVT  166 (388)
T ss_dssp             EEEE--ETTEEEEE-ESSEEEEEESSSTTCEEEEEECSSCEEEEEECSS--EEEEEETTSEEEEEETTTCCEEEEEESEE
T ss_pred             EEEE--CCCEEEEE-cCCcEEEEEchhhhccCccceeecceeeEEecCC--CEEEEECCCCEEEEEccCCccccccCCce
Confidence            9999  89999998 7899999999877666666677888888877654  388999999999999984           


Q ss_pred             -----CCccEEEEEcCCCeEEEEecCCCce--eeEEeccCCceeEEEEEEecCCCeeEEccccceEEEEEcCCCCeEEEe
Q 042146          174 -----PNGKFILVGTLDNTLRLWNYSTRKI--LKTYSGYTNSKYCISSTFSVTNGKYIVSHRDPVISVASHPAKNIIASG  246 (262)
Q Consensus       174 -----~~~~~l~~~~~dg~i~i~d~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~  246 (262)
                           |+|  ++.|..||.+++|+...++.  ..++......          .+   -.+|...|.++.|.+++.++++-
T Consensus       167 ~v~WSpkG--~~vg~~dg~i~~~~~~~~~~~~k~~I~~Pp~~----------~~---~~~~~~~V~sI~wl~~~~flv~y  231 (388)
T 1xip_A          167 SFDVTNSQ--LAVLLKDRSFQSFAWRNGEMEKQFEFSLPSEL----------EE---LPVEEYSPLSVTILSPQDFLAVF  231 (388)
T ss_dssp             EEEECSSE--EEEEETTSCEEEEEEETTEEEEEEEECCCHHH----------HT---SCTTTSEEEEEEESSSSEEEEEE
T ss_pred             EEEEcCCc--eEEEEcCCcEEEEcCCCccccccceecCCccc----------cc---ccCCCeeEEEEEEecCCeEEEEE
Confidence                 666  67899999999999887665  5555321000          00   00156789999999999888774


Q ss_pred             e
Q 042146          247 A  247 (262)
Q Consensus       247 ~  247 (262)
                      +
T Consensus       232 ~  232 (388)
T 1xip_A          232 G  232 (388)
T ss_dssp             E
T ss_pred             c
Confidence            4

>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis}

Probab=99.52  E-value=3.2e-11  Score=93.54  Aligned_cols=195  Identities=13%  Similarity=0.082  Sum_probs=132.4

Q ss_pred             CCCceeeeccc--ccceecc------cCcCceEEEEEccCCCeEEEecCCCeEEEeecCCCCCCCCCCCCCCccccCCcc
Q 042146            3 SDRSLESFRPY--TLTQTLN------GHLRAVSYVKFSHDGRLLTSSSAEKTLLTYSLSSISNFDSTPPSPLQKFTGHEQ   74 (262)
Q Consensus         3 ~d~~i~~~~~~--~~~~~~~------~h~~~v~~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~   74 (262)
                      .+++|..+++-  +....+.      ........+.+. +++.+++...++.|.+|                        
T Consensus        15 ~~~~l~~~d~~t~~~~~~i~~~~n~~~lg~~~~~i~~~-~~~lyv~~~~~~~v~vi------------------------   69 (328)
T 3dsm_A           15 SNATLSYYDPATCEVENEVFYRANGFKLGDVAQSMVIR-DGIGWIVVNNSHVIFAI------------------------   69 (328)
T ss_dssp             CCBEEEEEETTTTEEECSHHHHHHSSCCBSCEEEEEEE-TTEEEEEEGGGTEEEEE------------------------
T ss_pred             CCceEEEEECCCCEEhhhhHhhhcCcccCccceEEEEE-CCEEEEEEcCCCEEEEE------------------------
Confidence            36778888653  3333221      122346677774 45555666666777666                        


Q ss_pred             ccccceeEEEEecCCCccceecccCCcceEEEEEeCCCCEEEeecCCCeEEEEECCCCeeeeeeecCC-----CCeeeEE
Q 042146           75 GISDLATIRLWDVPTATSLKTLIGHTNYVFCINFNPQSNRIVSDTFNETIRIWDIKTGKCLKVLPAHS-----DPVTAID  149 (262)
Q Consensus        75 ~v~~~~~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~-----~~v~~~~  149 (262)
                                 |..+++.+.++. .......++++++++++++...++.|.+||+.+++....+....     .....++
T Consensus        70 -----------D~~t~~~~~~i~-~~~~p~~i~~~~~g~lyv~~~~~~~v~~iD~~t~~~~~~i~~g~~~~~~~~p~~i~  137 (328)
T 3dsm_A           70 -----------DINTFKEVGRIT-GFTSPRYIHFLSDEKAYVTQIWDYRIFIINPKTYEITGYIECPDMDMESGSTEQMV  137 (328)
T ss_dssp             -----------ETTTCCEEEEEE-CCSSEEEEEEEETTEEEEEEBSCSEEEEEETTTTEEEEEEECTTCCTTTCBCCCEE
T ss_pred             -----------ECcccEEEEEcC-CCCCCcEEEEeCCCeEEEEECCCCeEEEEECCCCeEEEEEEcCCccccCCCcceEE
Confidence                       445566655553 34567889998888555555478999999999998877765433     1456777


Q ss_pred             EccCCCEEEEEe--CCCeEEEEeCCC-------------------CCccEEEEEcCC----------CeEEEEecCCCce
Q 042146          150 FNRDGTMIVTSS--YDGLYRILDAST-------------------PNGKFILVGTLD----------NTLRLWNYSTRKI  198 (262)
Q Consensus       150 ~~~~~~~l~~~~--~dg~i~~~d~~~-------------------~~~~~l~~~~~d----------g~i~i~d~~~~~~  198 (262)
                      + . +..++++.  .++.|.++|..+                   +++++++++..+          +.|.++|..+++.
T Consensus       138 ~-~-~~~lyv~~~~~~~~v~viD~~t~~~~~~i~~g~~p~~i~~~~dG~l~v~~~~~~~~~~~~~~~~~v~~id~~t~~v  215 (328)
T 3dsm_A          138 Q-Y-GKYVYVNCWSYQNRILKIDTETDKVVDELTIGIQPTSLVMDKYNKMWTITDGGYEGSPYGYEAPSLYRIDAETFTV  215 (328)
T ss_dssp             E-E-TTEEEEEECTTCCEEEEEETTTTEEEEEEECSSCBCCCEECTTSEEEEEBCCBCTTCSSCBCCCEEEEEETTTTEE
T ss_pred             E-E-CCEEEEEcCCCCCEEEEEECCCCeEEEEEEcCCCccceEEcCCCCEEEEECCCccCCccccCCceEEEEECCCCeE
Confidence            7 4 44455554  489999999876                   677877776654          7899999998887


Q ss_pred             eeEEeccCCceeEEEEEEecCCCeeEEccccceEEEEEcCCCCeEEEeeecCCCcEEEEeecc
Q 042146          199 LKTYSGYTNSKYCISSTFSVTNGKYIVSHRDPVISVASHPAKNIIASGALDNDRTMKIWTQEK  261 (262)
Q Consensus       199 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~d~d~~i~iw~~~~  261 (262)
                      ...+...                     .......++++|+++.|+++.  .  .|.+||...
T Consensus       216 ~~~~~~~---------------------~g~~p~~la~~~d~~~lyv~~--~--~v~~~d~~t  253 (328)
T 3dsm_A          216 EKQFKFK---------------------LGDWPSEVQLNGTRDTLYWIN--N--DIWRMPVEA  253 (328)
T ss_dssp             EEEEECC---------------------TTCCCEEEEECTTSCEEEEES--S--SEEEEETTC
T ss_pred             EEEEecC---------------------CCCCceeEEEecCCCEEEEEc--c--EEEEEECCC
Confidence            7766531                     123678999999999988875  4  788888753

>1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A*

Probab=99.51  E-value=6e-11  Score=98.23  Aligned_cols=204  Identities=15%  Similarity=0.152  Sum_probs=139.1

Q ss_pred             CCCceeeec--ccccceecccCcCceEEEEEccCCCeEEEecCCCeEEEeecCCCCCCCCCCCCCCccccCCccccccce
Q 042146            3 SDRSLESFR--PYTLTQTLNGHLRAVSYVKFSHDGRLLTSSSAEKTLLTYSLSSISNFDSTPPSPLQKFTGHEQGISDLA   80 (262)
Q Consensus         3 ~d~~i~~~~--~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~   80 (262)
                      .++++..++  +.+.+.++.. ...+..+.|+|||+++++++.|+.|.+||+..                          
T Consensus       175 ~~~~V~viD~~t~~v~~~i~~-g~~p~~v~~SpDGr~lyv~~~dg~V~viD~~~--------------------------  227 (567)
T 1qks_A          175 DAGQIALIDGSTYEIKTVLDT-GYAVHISRLSASGRYLFVIGRDGKVNMIDLWM--------------------------  227 (567)
T ss_dssp             TTTEEEEEETTTCCEEEEEEC-SSCEEEEEECTTSCEEEEEETTSEEEEEETTS--------------------------
T ss_pred             CCCeEEEEECCCCeEEEEEeC-CCCccceEECCCCCEEEEEcCCCeEEEEECCC--------------------------
Confidence            356777776  3556666653 33567899999999999999999888886531                          


Q ss_pred             eEEEEecCCCccceecccCCcceEEEEEe----CCCCEEEeecC-CCeEEEEECCCCeeeeeeecC-----------CCC
Q 042146           81 TIRLWDVPTATSLKTLIGHTNYVFCINFN----PQSNRIVSDTF-NETIRIWDIKTGKCLKVLPAH-----------SDP  144 (262)
Q Consensus        81 ~i~v~d~~~~~~~~~~~~~~~~v~~~~~~----~~~~~l~~~~~-dg~i~vwd~~~~~~~~~~~~~-----------~~~  144 (262)
                             .+.+.+.++... .....++|+    |+|++++++.. ++.|.++|..+.+.+..+...           ...
T Consensus       228 -------~t~~~v~~i~~G-~~P~~ia~s~~~~pDGk~l~v~n~~~~~v~ViD~~t~~~~~~i~~~~~~~~~~~~~p~~r  299 (567)
T 1qks_A          228 -------KEPTTVAEIKIG-SEARSIETSKMEGWEDKYAIAGAYWPPQYVIMDGETLEPKKIQSTRGMTYDEQEYHPEPR  299 (567)
T ss_dssp             -------SSCCEEEEEECC-SEEEEEEECCSTTCTTTEEEEEEEETTEEEEEETTTCCEEEEEECCEECTTTCCEESCCC
T ss_pred             -------CCCcEeEEEecC-CCCceeEEccccCCCCCEEEEEEccCCeEEEEECCCCcEEEEEeccccccccccccCCCc
Confidence                   133444444432 335689999    69998877664 589999999999888776421           125


Q ss_pred             eeeEEEccCCCE-EEEEeCCCeEEEEeCCC---------------------CCccEEEEEc-CCCeEEEEecCCCceeeE
Q 042146          145 VTAIDFNRDGTM-IVTSSYDGLYRILDAST---------------------PNGKFILVGT-LDNTLRLWNYSTRKILKT  201 (262)
Q Consensus       145 v~~~~~~~~~~~-l~~~~~dg~i~~~d~~~---------------------~~~~~l~~~~-~dg~i~i~d~~~~~~~~~  201 (262)
                      +..+..++++.. ++....+|.|.++|...                     +++++++++. .++.|.++|+.+++.+..
T Consensus       300 va~i~~s~~~~~~vv~~~~~g~v~~vd~~~~~~~~v~~i~~~~~~~d~~~~pdgr~~~va~~~sn~V~ViD~~t~kl~~~  379 (567)
T 1qks_A          300 VAAILASHYRPEFIVNVKETGKILLVDYTDLNNLKTTEISAERFLHDGGLDGSHRYFITAANARNKLVVIDTKEGKLVAI  379 (567)
T ss_dssp             EEEEEECSSSSEEEEEETTTTEEEEEETTCSSEEEEEEEECCSSEEEEEECTTSCEEEEEEGGGTEEEEEETTTTEEEEE
T ss_pred             eEEEEEcCCCCEEEEEecCCCeEEEEecCCCccceeeeeeccccccCceECCCCCEEEEEeCCCCeEEEEECCCCcEEEE
Confidence            778888887664 44445678999998653                     6788776655 678999999999998877


Q ss_pred             Eec-cCCceeEEEEEEecCCCeeEEccccceEEEEEcCC-CCeEEEeeecCCCcEEEEeecc
Q 042146          202 YSG-YTNSKYCISSTFSVTNGKYIVSHRDPVISVASHPA-KNIIASGALDNDRTMKIWTQEK  261 (262)
Q Consensus       202 ~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~-~~~l~~~~~d~d~~i~iw~~~~  261 (262)
                      +.. ....                  |.+.-..+ ++|+ +..++++.. .++.|.+++...
T Consensus       380 i~vgg~~P------------------hpg~g~~~-~~p~~g~v~~t~~~-g~~~Vsvid~~~  421 (567)
T 1qks_A          380 EDTGGQTP------------------HPGRGANF-VHPTFGPVWATSHM-GDDSVALIGTDP  421 (567)
T ss_dssp             EECSSSSB------------------CCTTCEEE-EETTTEEEEEEEBS-SSSEEEEEECCT
T ss_pred             EeccCcCC------------------CCccceee-ECCCCCcEEEeCCC-CCCeEEEecCCC
Confidence            754 2211                  43322222 5787 444445432 357888887653

>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis}

Probab=99.50  E-value=7.2e-12  Score=97.16  Aligned_cols=195  Identities=8%  Similarity=0.017  Sum_probs=127.6

Q ss_pred             CCceeeec--ccccceecccCcCceEEEEEccCCCeEEEecCCCeEEEeecCCCCCCCCCCCCCCccccCCcccccccee
Q 042146            4 DRSLESFR--PYTLTQTLNGHLRAVSYVKFSHDGRLLTSSSAEKTLLTYSLSSISNFDSTPPSPLQKFTGHEQGISDLAT   81 (262)
Q Consensus         4 d~~i~~~~--~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~   81 (262)
                      +++|..++  +.+.+.++. .......++++++++.+++...++.|.+||..+                           
T Consensus        63 ~~~v~viD~~t~~~~~~i~-~~~~p~~i~~~~~g~lyv~~~~~~~v~~iD~~t---------------------------  114 (328)
T 3dsm_A           63 SHVIFAIDINTFKEVGRIT-GFTSPRYIHFLSDEKAYVTQIWDYRIFIINPKT---------------------------  114 (328)
T ss_dssp             GTEEEEEETTTCCEEEEEE-CCSSEEEEEEEETTEEEEEEBSCSEEEEEETTT---------------------------
T ss_pred             CCEEEEEECcccEEEEEcC-CCCCCcEEEEeCCCeEEEEECCCCeEEEEECCC---------------------------
Confidence            45666665  355666664 346688999999986555554788888886543                           


Q ss_pred             EEEEecCCCccceecccC-----CcceEEEEEeCCCCEEEeec-CCCeEEEEECCCCeeeeeeecCCCCeeeEEEccCCC
Q 042146           82 IRLWDVPTATSLKTLIGH-----TNYVFCINFNPQSNRIVSDT-FNETIRIWDIKTGKCLKVLPAHSDPVTAIDFNRDGT  155 (262)
Q Consensus        82 i~v~d~~~~~~~~~~~~~-----~~~v~~~~~~~~~~~l~~~~-~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~  155 (262)
                              ++....+...     ......+++ .++.++++.. .++.|.++|+++++.+..+... .....++++|+|+
T Consensus       115 --------~~~~~~i~~g~~~~~~~~p~~i~~-~~~~lyv~~~~~~~~v~viD~~t~~~~~~i~~g-~~p~~i~~~~dG~  184 (328)
T 3dsm_A          115 --------YEITGYIECPDMDMESGSTEQMVQ-YGKYVYVNCWSYQNRILKIDTETDKVVDELTIG-IQPTSLVMDKYNK  184 (328)
T ss_dssp             --------TEEEEEEECTTCCTTTCBCCCEEE-ETTEEEEEECTTCCEEEEEETTTTEEEEEEECS-SCBCCCEECTTSE
T ss_pred             --------CeEEEEEEcCCccccCCCcceEEE-ECCEEEEEcCCCCCEEEEEECCCCeEEEEEEcC-CCccceEEcCCCC
Confidence                    2222222111     113445666 3444444443 4889999999999988877653 3457899999999


Q ss_pred             EEEEEeCC----------CeEEEEeCCC---------------------CCccEEEEEcCCCeEEEEecCCCceeeEEec
Q 042146          156 MIVTSSYD----------GLYRILDAST---------------------PNGKFILVGTLDNTLRLWNYSTRKILKTYSG  204 (262)
Q Consensus       156 ~l~~~~~d----------g~i~~~d~~~---------------------~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~  204 (262)
                      +++++..+          +.|.++|..+                     +++++|+++..  .|.+||..+++.......
T Consensus       185 l~v~~~~~~~~~~~~~~~~~v~~id~~t~~v~~~~~~~~g~~p~~la~~~d~~~lyv~~~--~v~~~d~~t~~~~~~~~~  262 (328)
T 3dsm_A          185 MWTITDGGYEGSPYGYEAPSLYRIDAETFTVEKQFKFKLGDWPSEVQLNGTRDTLYWINN--DIWRMPVEADRVPVRPFL  262 (328)
T ss_dssp             EEEEBCCBCTTCSSCBCCCEEEEEETTTTEEEEEEECCTTCCCEEEEECTTSCEEEEESS--SEEEEETTCSSCCSSCSB
T ss_pred             EEEEECCCccCCccccCCceEEEEECCCCeEEEEEecCCCCCceeEEEecCCCEEEEEcc--EEEEEECCCCceeeeeee
Confidence            77777654          7899999765                     55677766654  788888887765321100


Q ss_pred             cCCceeEEEEEEecCCCeeEEccccceEEEEEcC-CCCeEEEe----eecCCCcEEEEeec
Q 042146          205 YTNSKYCISSTFSVTNGKYIVSHRDPVISVASHP-AKNIIASG----ALDNDRTMKIWTQE  260 (262)
Q Consensus       205 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p-~~~~l~~~----~~d~d~~i~iw~~~  260 (262)
                      .                    ........++++| ++.++++.    .  .++.|.+|+.+
T Consensus       263 ~--------------------~~~~~p~gi~vdp~~g~lyva~~~~y~--~~~~V~v~d~~  301 (328)
T 3dsm_A          263 E--------------------FRDTKYYGLTVNPNNGEVYVADAIDYQ--QQGIVYRYSPQ  301 (328)
T ss_dssp             C--------------------CCSSCEEEEEECTTTCCEEEEECTTSS--SEEEEEEECTT
T ss_pred             c--------------------CCCCceEEEEEcCCCCeEEEEcccccc--cCCEEEEECCC
Confidence            0                    0235678999999 45555555    4  57899999875

>2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A*

Probab=99.50  E-value=5.6e-12  Score=107.79  Aligned_cols=194  Identities=13%  Similarity=0.104  Sum_probs=122.9

Q ss_pred             eEEEEEccCCCeEEEecCCCeEEEeecCCCCCCCCCCCCCCccccCCccccccceeEEEEecCCCccc----eecccCCc
Q 042146           26 VSYVKFSHDGRLLTSSSAEKTLLTYSLSSISNFDSTPPSPLQKFTGHEQGISDLATIRLWDVPTATSL----KTLIGHTN  101 (262)
Q Consensus        26 v~~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~i~v~d~~~~~~~----~~~~~~~~  101 (262)
                      +..++|+|||+.|+.++.++.-      .    . ..        +..........|++|++.+++..    .....+..
T Consensus       173 ~~~~~wspDg~~l~~~~~~~~~------~----~-~~--------~~~~~~~~~~~v~~~~l~t~~~~~~~v~~~~~~~~  233 (710)
T 2xdw_A          173 FSCMAWTHDGKGMFYNAYPQQD------G----K-SD--------GTETSTNLHQKLYYHVLGTDQSEDILCAEFPDEPK  233 (710)
T ss_dssp             SCCEEECTTSSEEEEEECCCCS------S----C-CS--------SSCCCCCCCCEEEEEETTSCGGGCEEEECCTTCTT
T ss_pred             cceEEEEeCCCEEEEEEECCcc------c----c-cc--------ccccccCCCCEEEEEECCCCcccceEEeccCCCCe
Confidence            6779999999999988876530      0    0 00        00000011125788888776532    22233455


Q ss_pred             ceEEEEEeCCCCEEEeecC-----CCeEEEEECCC------Ce-eeeeeecCCCCeeeEEEccCCCEEEEEeCC----Ce
Q 042146          102 YVFCINFNPQSNRIVSDTF-----NETIRIWDIKT------GK-CLKVLPAHSDPVTAIDFNRDGTMIVTSSYD----GL  165 (262)
Q Consensus       102 ~v~~~~~~~~~~~l~~~~~-----dg~i~vwd~~~------~~-~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d----g~  165 (262)
                      .+..+.|+|+|++|+..+.     +..|.+||+.+      +. ....+..+...+.. .|+|+|+.|+..+..    +.
T Consensus       234 ~~~~~~~SpDg~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~l~~~~~~~~~-~~s~dg~~l~~~s~~~~~~~~  312 (710)
T 2xdw_A          234 WMGGAELSDDGRYVLLSIREGCDPVNRLWYCDLQQESNGITGILKWVKLIDNFEGEYD-YVTNEGTVFTFKTNRHSPNYR  312 (710)
T ss_dssp             CEEEEEECTTSCEEEEEEECSSSSCCEEEEEEGGGSSSSSCSSCCCEEEECSSSSCEE-EEEEETTEEEEEECTTCTTCE
T ss_pred             EEEEEEEcCCCCEEEEEEEccCCCccEEEEEECcccccccCCccceEEeeCCCCcEEE-EEeccCCEEEEEECCCCCCCE
Confidence            6789999999999887654     56899999986      43 35556666665554 588999887776643    36


Q ss_pred             EEEEeCCC------------------------CCccEEEEEcCCC--eEEEEecCCCceeeEEeccCCceeEEEEEEecC
Q 042146          166 YRILDAST------------------------PNGKFILVGTLDN--TLRLWNYSTRKILKTYSGYTNSKYCISSTFSVT  219 (262)
Q Consensus       166 i~~~d~~~------------------------~~~~~l~~~~~dg--~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~  219 (262)
                      |.+||+..                        +++.++++...++  .|++|++.+++.+..+..               
T Consensus       313 l~~~d~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~lv~~~~~~g~~~l~~~~~~~g~~~~~l~~---------------  377 (710)
T 2xdw_A          313 LINIDFTDPEESKWKVLVPEHEKDVLEWVACVRSNFLVLCYLHDVKNTLQLHDLATGALLKIFPL---------------  377 (710)
T ss_dssp             EEEEETTSCCGGGCEEEECCCSSCEEEEEEEETTTEEEEEEEETTEEEEEEEETTTCCEEEEECC---------------
T ss_pred             EEEEeCCCCCcccceeccCCCCCCeEEEEEEEcCCEEEEEEEECCEEEEEEEECCCCCEEEecCC---------------
Confidence            99998764                        2344555555555  344556555655555543               


Q ss_pred             CCeeEEccccceEEEEEcCCCCeEEEe--eecCCCcEEEEeecc
Q 042146          220 NGKYIVSHRDPVISVASHPAKNIIASG--ALDNDRTMKIWTQEK  261 (262)
Q Consensus       220 ~~~~~~~~~~~v~~~~~~p~~~~l~~~--~~d~d~~i~iw~~~~  261 (262)
                             +.+.+..++++|+++.++..  +....+.|.+||+..
T Consensus       378 -------~~~~v~~~~~s~d~~~l~~~~ss~~~P~~i~~~d~~t  414 (710)
T 2xdw_A          378 -------EVGSVVGYSGQKKDTEIFYQFTSFLSPGIIYHCDLTK  414 (710)
T ss_dssp             -------CSSEEEEEECCTTCSEEEEEEECSSCCCEEEEEETTS
T ss_pred             -------CCceEEEEecCCCCCEEEEEEeCCCCCCEEEEEECCC
Confidence                   55678889999998766533  222457888998753

>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A*

Probab=99.50  E-value=1.4e-10  Score=88.27  Aligned_cols=214  Identities=11%  Similarity=0.076  Sum_probs=136.2

Q ss_pred             cccCcCceEEEEEccCCCeEEEecCCCeEEEeecCCCCCCCCC---CCCCCccc-cCCcccccc----ceeEEEEecCCC
Q 042146           19 LNGHLRAVSYVKFSHDGRLLTSSSAEKTLLTYSLSSISNFDST---PPSPLQKF-TGHEQGISD----LATIRLWDVPTA   90 (262)
Q Consensus        19 ~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~---~~~~~~~~-~~~~~~v~~----~~~i~v~d~~~~   90 (262)
                      +..+...+.++++.++|+++++...++.|.+||.. .......   .......+ ......+..    ...|..||.. +
T Consensus        10 ~~~~~~~~~~i~~d~~g~l~v~~~~~~~v~~~d~~-~~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~-g   87 (299)
T 2z2n_A           10 LTNQDTGPYGITVSDKGKVWITQHKANMISCINLD-GKITEYPLPTPDAKVMCLTISSDGEVWFTENAANKIGRITKK-G   87 (299)
T ss_dssp             CCSSSCCEEEEEECTTSCEEEEETTTTEEEEECTT-CCEEEEECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECTT-S
T ss_pred             CCCcCCCccceEECCCCCEEEEecCCCcEEEEcCC-CCeEEecCCcccCceeeEEECCCCCEEEeCCCCCeEEEECCC-C
Confidence            34456789999999999988877778999999876 2211100   00111111 111111111    1257778765 3


Q ss_pred             cc-ceecccCCcceEEEEEeCCCCEEEeecCCCeEEEEECCCCeeeee-eecCCCCeeeEEEccCCCEEEEEeCCCeEEE
Q 042146           91 TS-LKTLIGHTNYVFCINFNPQSNRIVSDTFNETIRIWDIKTGKCLKV-LPAHSDPVTAIDFNRDGTMIVTSSYDGLYRI  168 (262)
Q Consensus        91 ~~-~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~-~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~  168 (262)
                      +. ...+......+..++++|+++++++...++.|.+||. +++.... ...+...+..+++.++++++++...++.|..
T Consensus        88 ~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~d~-~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~  166 (299)
T 2z2n_A           88 IIKEYTLPNPDSAPYGITEGPNGDIWFTEMNGNRIGRITD-DGKIREYELPNKGSYPSFITLGSDNALWFTENQNNAIGR  166 (299)
T ss_dssp             CEEEEECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECT-TCCEEEEECSSTTCCEEEEEECTTSCEEEEETTTTEEEE
T ss_pred             cEEEEeCCCcCCCceeeEECCCCCEEEEecCCceEEEECC-CCCEEEecCCCCCCCCceEEEcCCCCEEEEeCCCCEEEE
Confidence            32 1122224457899999999998888877889999998 5544322 2234457899999999988777777788888


Q ss_pred             EeCCC--------------------CCccEEEEEcCCCeEEEEecCCCceeeEEeccCCceeEEEEEEecCCCeeEEccc
Q 042146          169 LDAST--------------------PNGKFILVGTLDNTLRLWNYSTRKILKTYSGYTNSKYCISSTFSVTNGKYIVSHR  228 (262)
Q Consensus       169 ~d~~~--------------------~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  228 (262)
                      ||...                    +++.++++...++.|.+||. +++... +...                    .+.
T Consensus       167 ~~~~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~-~g~~~~-~~~~--------------------~~~  224 (299)
T 2z2n_A          167 ITESGDITEFKIPTPASGPVGITKGNDDALWFVEIIGNKIGRITT-SGEITE-FKIP--------------------TPN  224 (299)
T ss_dssp             ECTTCCEEEEECSSTTCCEEEEEECTTSSEEEEETTTTEEEEECT-TCCEEE-EECS--------------------STT
T ss_pred             EcCCCcEEEeeCCCCCCcceeEEECCCCCEEEEccCCceEEEECC-CCcEEE-EECC--------------------CCC
Confidence            88632                    45555555555677777777 554322 2110                    034


Q ss_pred             cceEEEEEcCCCCeEEEeeecCCCcEEEEee
Q 042146          229 DPVISVASHPAKNIIASGALDNDRTMKIWTQ  259 (262)
Q Consensus       229 ~~v~~~~~~p~~~~l~~~~~d~d~~i~iw~~  259 (262)
                      ..+.+++++|++.++++..  .++.|..|+.
T Consensus       225 ~~~~~i~~~~~g~l~v~~~--~~~~i~~~d~  253 (299)
T 2z2n_A          225 ARPHAITAGAGIDLWFTEW--GANKIGRLTS  253 (299)
T ss_dssp             CCEEEEEECSTTCEEEEET--TTTEEEEEET
T ss_pred             CCceeEEECCCCCEEEecc--CCceEEEECC
Confidence            5678899999988777765  5678888875

>1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ...

Probab=99.48  E-value=1.5e-11  Score=94.48  Aligned_cols=214  Identities=7%  Similarity=0.028  Sum_probs=135.6

Q ss_pred             cCcCceEEEEEccCCCeEEE-------ecCCCeEEEeecCCCCCCCCCC------CCCCccc-cCCc-cc--ccc-ceeE
Q 042146           21 GHLRAVSYVKFSHDGRLLTS-------SSAEKTLLTYSLSSISNFDSTP------PSPLQKF-TGHE-QG--ISD-LATI   82 (262)
Q Consensus        21 ~h~~~v~~~~~~~~~~~l~s-------~~~d~~i~iw~~~~~~~~~~~~------~~~~~~~-~~~~-~~--v~~-~~~i   82 (262)
                      ..-....+++|+++++++++       +..++.|.+||...........      ......+ .... ..  +.. ...|
T Consensus        15 ~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~i~~~~~~g~l~v~~~~~~l   94 (314)
T 1pjx_A           15 EDIPGAEGPVFDKNGDFYIVAPEVEVNGKPAGEILRIDLKTGKKTVICKPEVNGYGGIPAGCQCDRDANQLFVADMRLGL   94 (314)
T ss_dssp             CCCTTCEEEEECTTSCEEEEETTCEETTEECCEEEEECTTTCCEEEEECCEETTEECCEEEEEECSSSSEEEEEETTTEE
T ss_pred             ccCCCccCceECCCCCEEEEEeccccCCCCCCEEEEEeCCCCcEEEEEecccCCCCCCCceEEEecCCCcEEEEECCCCE
Confidence            33445689999999988877       6778999999875533211100      0001111 1111 11  111 1268


Q ss_pred             EEEecCCCcccee-ccc----CCcceEEEEEeCCCCEEEeecCC---------------CeEEEEECCCCeeeeeeecCC
Q 042146           83 RLWDVPTATSLKT-LIG----HTNYVFCINFNPQSNRIVSDTFN---------------ETIRIWDIKTGKCLKVLPAHS  142 (262)
Q Consensus        83 ~v~d~~~~~~~~~-~~~----~~~~v~~~~~~~~~~~l~~~~~d---------------g~i~vwd~~~~~~~~~~~~~~  142 (262)
                      .+||.. ++.... ...    ....+.+++++|+++++++...+               +.|..||.. ++..... .+.
T Consensus        95 ~~~d~~-g~~~~~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-g~~~~~~-~~~  171 (314)
T 1pjx_A           95 LVVQTD-GTFEEIAKKDSEGRRMQGCNDCAFDYEGNLWITAPAGEVAPADYTRSMQEKFGSIYCFTTD-GQMIQVD-TAF  171 (314)
T ss_dssp             EEEETT-SCEEECCSBCTTSCBCBCCCEEEECTTSCEEEEECBCBCTTSCCCBTTSSSCEEEEEECTT-SCEEEEE-EEE
T ss_pred             EEEeCC-CCEEEEEeccCCCccccCCcCEEECCCCCEEEEecCcccccccccccccCCCCeEEEECCC-CCEEEec-cCC
Confidence            888887 554322 211    12458899999999988777654               578888866 5543332 234


Q ss_pred             CCeeeEEEc----cCCCEEEEE-eCCCeEEEEeCC-C--------------------------CCccEEEEEcCCCeEEE
Q 042146          143 DPVTAIDFN----RDGTMIVTS-SYDGLYRILDAS-T--------------------------PNGKFILVGTLDNTLRL  190 (262)
Q Consensus       143 ~~v~~~~~~----~~~~~l~~~-~~dg~i~~~d~~-~--------------------------~~~~~l~~~~~dg~i~i  190 (262)
                      .....++++    |+++.++.+ ..++.|.+||.. .                          ++++++++...++.|.+
T Consensus       172 ~~~~~i~~~~~~d~dg~~l~v~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~i~~d~~G~l~v~~~~~~~i~~  251 (314)
T 1pjx_A          172 QFPNGIAVRHMNDGRPYQLIVAETPTKKLWSYDIKGPAKIENKKVWGHIPGTHEGGADGMDFDEDNNLLVANWGSSHIEV  251 (314)
T ss_dssp             SSEEEEEEEECTTSCEEEEEEEETTTTEEEEEEEEETTEEEEEEEEEECCCCSSCEEEEEEEBTTCCEEEEEETTTEEEE
T ss_pred             CCcceEEEecccCCCCCEEEEEECCCCeEEEEECCCCCccccceEEEECCCCCCCCCCceEECCCCCEEEEEcCCCEEEE
Confidence            456889999    998765555 567889999853 1                          34555666556778888


Q ss_pred             EecCCCceeeEEeccCCceeEEEEEEecCCCeeEEccccceEEEEEcCCCCeEEEeeecCCCcEEEEeec
Q 042146          191 WNYSTRKILKTYSGYTNSKYCISSTFSVTNGKYIVSHRDPVISVASHPAKNIIASGALDNDRTMKIWTQE  260 (262)
Q Consensus       191 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~d~d~~i~iw~~~  260 (262)
                      ||..+++.+..+..                      +...+.+++|+|+++.|+.++. .++.|..|+++
T Consensus       252 ~d~~~g~~~~~~~~----------------------~~~~~~~i~~~~dg~~l~v~~~-~~~~l~~~~~~  298 (314)
T 1pjx_A          252 FGPDGGQPKMRIRC----------------------PFEKPSNLHFKPQTKTIFVTEH-ENNAVWKFEWQ  298 (314)
T ss_dssp             ECTTCBSCSEEEEC----------------------SSSCEEEEEECTTSSEEEEEET-TTTEEEEEECS
T ss_pred             EcCCCCcEeEEEeC----------------------CCCCceeEEECCCCCEEEEEeC-CCCeEEEEeCC
Confidence            88876766655543                      4467899999999995554442 56889998875

>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1

Probab=99.46  E-value=2.8e-11  Score=91.83  Aligned_cols=155  Identities=15%  Similarity=0.256  Sum_probs=112.7

Q ss_pred             eEEEEecCCCccceecc------cCCcceEEEEEe-CCCCEEEeecC-CCeEEEEECCCCeeeeeeec-CCCCeeeEEEc
Q 042146           81 TIRLWDVPTATSLKTLI------GHTNYVFCINFN-PQSNRIVSDTF-NETIRIWDIKTGKCLKVLPA-HSDPVTAIDFN  151 (262)
Q Consensus        81 ~i~v~d~~~~~~~~~~~------~~~~~v~~~~~~-~~~~~l~~~~~-dg~i~vwd~~~~~~~~~~~~-~~~~v~~~~~~  151 (262)
                      .|.+||.. ++.+..+.      .+...+..+++. ++++++++... ++.|.+|| .+++.+..+.. +...+.+++++
T Consensus        52 ~i~~~d~~-g~~~~~~~~~~~~~~~~~~p~~i~~~~~~g~l~v~~~~~~~~i~~~d-~~g~~~~~~~~~~~~~~~~i~~~  129 (286)
T 1q7f_A           52 RIQIFDKE-GRFKFQFGECGKRDSQLLYPNRVAVVRNSGDIIVTERSPTHQIQIYN-QYGQFVRKFGATILQHPRGVTVD  129 (286)
T ss_dssp             EEEEECTT-SCEEEEECCBSSSTTCBSSEEEEEEETTTTEEEEEECGGGCEEEEEC-TTSCEEEEECTTTCSCEEEEEEC
T ss_pred             EEEEECCC-CcEEEEecccCCCcccccCceEEEEEcCCCeEEEEcCCCCCEEEEEC-CCCcEEEEecCccCCCceEEEEe
Confidence            58888876 55544442      234578899995 67776666643 78999999 56766666643 34568999999


Q ss_pred             cCCCEEEEEeCCCeEEEEeCCC---------------------CCccEEEEEcCCCeEEEEecCCCceeeEEeccCCcee
Q 042146          152 RDGTMIVTSSYDGLYRILDAST---------------------PNGKFILVGTLDNTLRLWNYSTRKILKTYSGYTNSKY  210 (262)
Q Consensus       152 ~~~~~l~~~~~dg~i~~~d~~~---------------------~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~  210 (262)
                      |+++++++...++.|.+||...                     ++++++++...++.|++||.. ++.+..+....    
T Consensus       130 ~~g~l~v~~~~~~~i~~~~~~g~~~~~~~~~~~~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~-g~~~~~~~~~g----  204 (286)
T 1q7f_A          130 NKGRIIVVECKVMRVIIFDQNGNVLHKFGCSKHLEFPNGVVVNDKQEIFISDNRAHCVKVFNYE-GQYLRQIGGEG----  204 (286)
T ss_dssp             TTSCEEEEETTTTEEEEECTTSCEEEEEECTTTCSSEEEEEECSSSEEEEEEGGGTEEEEEETT-CCEEEEESCTT----
T ss_pred             CCCCEEEEECCCCEEEEEcCCCCEEEEeCCCCccCCcEEEEECCCCCEEEEECCCCEEEEEcCC-CCEEEEEccCC----
Confidence            9999888877889999998543                     567777777778899999974 55555554311    


Q ss_pred             EEEEEEecCCCeeEEccccceEEEEEcCCCCeEEEeeecCCC-cEEEEeec
Q 042146          211 CISSTFSVTNGKYIVSHRDPVISVASHPAKNIIASGALDNDR-TMKIWTQE  260 (262)
Q Consensus       211 ~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~d~d~-~i~iw~~~  260 (262)
                                      +...+..++++|++.++++..  .++ .|.+|+.+
T Consensus       205 ----------------~~~~p~~i~~d~~G~l~v~~~--~~~~~i~~~~~~  237 (286)
T 1q7f_A          205 ----------------ITNYPIGVGINSNGEILIADN--HNNFNLTIFTQD  237 (286)
T ss_dssp             ----------------TSCSEEEEEECTTCCEEEEEC--SSSCEEEEECTT
T ss_pred             ----------------ccCCCcEEEECCCCCEEEEeC--CCCEEEEEECCC
Confidence                            235678999999998888876  565 89999864

>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A*

Probab=99.45  E-value=4.8e-11  Score=92.54  Aligned_cols=173  Identities=16%  Similarity=0.188  Sum_probs=114.7

Q ss_pred             Cceeeecc--cccceecc-cCcCceEEEEEccCCCeEEEecCCCeEEEeecCCCCCCCCCCCCCCccccCCcccccccee
Q 042146            5 RSLESFRP--YTLTQTLN-GHLRAVSYVKFSHDGRLLTSSSAEKTLLTYSLSSISNFDSTPPSPLQKFTGHEQGISDLAT   81 (262)
Q Consensus         5 ~~i~~~~~--~~~~~~~~-~h~~~v~~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~   81 (262)
                      ++|..+++  .++...+. ++......++++|+|+++++...++.|++|+.+....       .+..+            
T Consensus        69 ~~i~~~d~~~g~~~~~~~~~~~~~p~gia~d~~g~l~v~d~~~~~v~~~~~~g~~~-------~~~~~------------  129 (329)
T 3fvz_A           69 DTILVIDPNNAEILQSSGKNLFYLPHGLSIDTDGNYWVTDVALHQVFKLDPHSKEG-------PLLIL------------  129 (329)
T ss_dssp             CCEEEECTTTCCEEEEECTTTCSSEEEEEECTTSCEEEEETTTTEEEEECTTCSSC-------CSEEE------------
T ss_pred             CcEEEEECCCCeEEeccCCCccCCceEEEECCCCCEEEEECCCCEEEEEeCCCCeE-------EEEEe------------
Confidence            45666654  44444443 4456789999999999999988899999997643100       00000            


Q ss_pred             EEEEecCCCccceecccCCcceEEEEEeC-CCCEEEeec-CCCeEEEEECCCCeeeeeeecCC----------CCeeeEE
Q 042146           82 IRLWDVPTATSLKTLIGHTNYVFCINFNP-QSNRIVSDT-FNETIRIWDIKTGKCLKVLPAHS----------DPVTAID  149 (262)
Q Consensus        82 i~v~d~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~-~dg~i~vwd~~~~~~~~~~~~~~----------~~v~~~~  149 (262)
                          .  .......-..+......++++| ++.++++.+ .++.|++|| .+++.+..+....          .....++
T Consensus       130 ----~--~~~~~g~~~~~~~~P~~ia~~~~~g~lyv~d~~~~~~I~~~~-~~g~~~~~~~~~g~~~~~~~~~~~~p~gia  202 (329)
T 3fvz_A          130 ----G--RSMQPGSDQNHFCQPTDVAVEPSTGAVFVSDGYCNSRIVQFS-PSGKFVTQWGEESSGSSPRPGQFSVPHSLA  202 (329)
T ss_dssp             ----S--BTTBCCCSTTCCSSEEEEEECTTTCCEEEEECSSCCEEEEEC-TTSCEEEEECEECCSSSCCTTEESCEEEEE
T ss_pred             ----c--ccCCCCCCccccCCCcEEEEeCCCCeEEEEeCCCCCeEEEEc-CCCCEEEEeccCCCCCCCCCcccCCCcEEE
Confidence                0  0000000023445688999999 788888886 689999999 5677666664222          2378999


Q ss_pred             EccC-CCEEEEEeCCCeEEEEeCCC----------------------C------CccEEEEEcCCCeEEEEecCCCceee
Q 042146          150 FNRD-GTMIVTSSYDGLYRILDAST----------------------P------NGKFILVGTLDNTLRLWNYSTRKILK  200 (262)
Q Consensus       150 ~~~~-~~~l~~~~~dg~i~~~d~~~----------------------~------~~~~l~~~~~dg~i~i~d~~~~~~~~  200 (262)
                      ++|+ +.++++...++.|++||..+                      |      +++.+++...+..|++||..+++.+.
T Consensus       203 ~d~~~g~l~v~d~~~~~I~~~~~~~G~~~~~~~~~~~~~~~~~~~~~pg~~~~~~g~~~v~~~~~~~v~~~~~~~g~~~~  282 (329)
T 3fvz_A          203 LVPHLDQLCVADRENGRIQCFKTDTKEFVREIKHASFGRNVFAISYIPGFLFAVNGKPYFGDQEPVQGFVMNFSSGEIID  282 (329)
T ss_dssp             EETTTTEEEEEETTTTEEEEEETTTCCEEEEECCTTTTTCEEEEEEETTEEEEEECCCCTTCSCCCCEEEEETTTCCEEE
T ss_pred             EECCCCEEEEEECCCCEEEEEECCCCcEEEEEeccccCCCcceeeecCCEEEEeCCCEEeccCCCcEEEEEEcCCCeEEE
Confidence            9998 77777778899999999872                      1      11111222234589999999999988


Q ss_pred             EEe
Q 042146          201 TYS  203 (262)
Q Consensus       201 ~~~  203 (262)
                      .+.
T Consensus       283 ~~~  285 (329)
T 3fvz_A          283 VFK  285 (329)
T ss_dssp             EEC
T ss_pred             EEc
Confidence            874

>2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus}

Probab=99.45  E-value=1.6e-11  Score=95.67  Aligned_cols=185  Identities=11%  Similarity=0.105  Sum_probs=108.6

Q ss_pred             eEEEEEccCCCeEEEecCCCeEEEeecCCCCCCCCCCCCCCccccCCccc--c--ccceeEEEEecCCCccceecccCCc
Q 042146           26 VSYVKFSHDGRLLTSSSAEKTLLTYSLSSISNFDSTPPSPLQKFTGHEQG--I--SDLATIRLWDVPTATSLKTLIGHTN  101 (262)
Q Consensus        26 v~~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~--v--~~~~~i~v~d~~~~~~~~~~~~~~~  101 (262)
                      +..++|+|+|+.|+.++.+..       .     .........+.....+  .  .....|.+||+.+++.+..+.. . 
T Consensus       106 ~~~~~wspdg~~l~~~~~~~~-------~-----~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~l~~-~-  171 (347)
T 2gop_A          106 IRSLEWNEDSRKLLIVGFKRR-------E-----DEDFIFEDDVPAWFDDLGFFDGEKTTFWIFDTESEEVIEEFEK-P-  171 (347)
T ss_dssp             EEEEEECTTSSEEEEEEECCC-------C--------------CCCC---------CEEEEEEEETTTTEEEEEEEE-E-
T ss_pred             ccceeECCCCCEEEEEEccCC-------C-----cCCcEEEcccceeecCcccccCccceEEEEECCCCeEEeeecC-C-
Confidence            899999999999988875320       0     0000000000000000  0  1123688999988776344443 3 


Q ss_pred             ceEEEEEeCCCCEEEeecCCC-------eEEEEECCCCeeeeeeecCCCCeeeEEEccCCCEEEEEeCC--------CeE
Q 042146          102 YVFCINFNPQSNRIVSDTFNE-------TIRIWDIKTGKCLKVLPAHSDPVTAIDFNRDGTMIVTSSYD--------GLY  166 (262)
Q Consensus       102 ~v~~~~~~~~~~~l~~~~~dg-------~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d--------g~i  166 (262)
                      .+..+.|+|++ +++++..++       ...+|.+.+++. ..+..+ ..+..+  +|+|+.|+.++.+        ..|
T Consensus       172 ~~~~~~~spdg-~~~~~~~~~~~~~~~~~~~l~~~d~~~~-~~l~~~-~~~~~~--spdg~~l~~~~~~~~~~~~~~~~l  246 (347)
T 2gop_A          172 RFSSGIWHRDK-IVVNVPHREIIPQYFKFWDIYIWEDGKE-EKMFEK-VSFYAV--DSDGERILLYGKPEKKYMSEHNKL  246 (347)
T ss_dssp             TTCEEEEETTE-EEEEEECCCSSCCSSCCEEEEEEETTEE-EEEEEE-ESEEEE--EECSSCEEEEECCSSSCCCSSCEE
T ss_pred             CcccccCCCCe-EEEEEecccccccccccccEEEeCCCce-EEeccC-cceeeE--CCCCCEEEEEEccccCCccccceE
Confidence            78899999999 777775442       334443335543 334334 445444  9999988877744        468


Q ss_pred             EEEeCCC-------------------CCccEEEEEcCCCeEEEEecCCCceeeEEeccCCceeEEEEEEecCCCeeEEcc
Q 042146          167 RILDAST-------------------PNGKFILVGTLDNTLRLWNYSTRKILKTYSGYTNSKYCISSTFSVTNGKYIVSH  227 (262)
Q Consensus       167 ~~~d~~~-------------------~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  227 (262)
                      .+|| ..                   .++ ++++++.++.++|| +.+++....+.                       +
T Consensus       247 ~~~d-~~~~~~l~~~~~~~~~~~~~~sdg-~~~~~~~~~~~~l~-~~~g~~~~~~~-----------------------~  300 (347)
T 2gop_A          247 YIYD-GKEVMGILDEVDRGVGQAKIKDGK-VYFTLFEEGSVNLY-IWDGEIKPIAK-----------------------G  300 (347)
T ss_dssp             EEEC-SSCEEESSTTCCSEEEEEEEETTE-EEEEEEETTEEEEE-EESSSEEEEEC-----------------------S
T ss_pred             EEEC-CCceEeccccCCcccCCccEEcCc-EEEEEecCCcEEEE-EcCCceEEEec-----------------------C
Confidence            8887 22                   122 55666667777777 65444322221                       5


Q ss_pred             ccceEEEEEcCCCCeEEEeeecCCCcE-EEEee
Q 042146          228 RDPVISVASHPAKNIIASGALDNDRTM-KIWTQ  259 (262)
Q Consensus       228 ~~~v~~~~~~p~~~~l~~~~~d~d~~i-~iw~~  259 (262)
                      ...|.+++|+|  .++++++  .++.. .||.+
T Consensus       301 ~~~v~~~~~s~--~~~~~~~--~~~~~~~l~~~  329 (347)
T 2gop_A          301 RHWIMGFDVDE--IVVYLKE--TATRLRELFTW  329 (347)
T ss_dssp             SSEEEEEEESS--SEEEEEE--CSSSCCEEEEE
T ss_pred             CCeEEeeeeeC--cEEEEEc--CCCChHHheEe
Confidence            66789999999  6677766  55554 77765

>1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C*

Probab=99.44  E-value=2.4e-12  Score=101.05  Aligned_cols=124  Identities=13%  Similarity=0.112  Sum_probs=97.9

Q ss_pred             ceEEEEEeCCCCEEEeecCCCeEEEEECCCCe-----------eeeeeecCCCCeeeEEEccCCCEEEEEeCCCeEEEEe
Q 042146          102 YVFCINFNPQSNRIVSDTFNETIRIWDIKTGK-----------CLKVLPAHSDPVTAIDFNRDGTMIVTSSYDGLYRILD  170 (262)
Q Consensus       102 ~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~-----------~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~d  170 (262)
                      .++.+++++...++++|+.+ .+.+|++...+           +.... .+.+ |+.++|  ++++|+++ .++.|++||
T Consensus        39 ~~nlLais~~~gll~a~~~~-~l~v~~~~~l~~~~~~~~~~~~~~~~~-~lp~-V~~l~f--d~~~L~v~-~~~~l~v~d  112 (388)
T 1xip_A           39 SLQNLDISNSKSLFVAASGS-KAVVGELQLLRDHITSDSTPLTFKWEK-EIPD-VIFVCF--HGDQVLVS-TRNALYSLD  112 (388)
T ss_dssp             CCBCEEEETTTTEEEEEETT-EEEEEEHHHHHHHHHSSSCCCCCSEEE-ECTT-EEEEEE--ETTEEEEE-ESSEEEEEE
T ss_pred             cccEEEEcCCCCEEEEeCCC-EEEEEEhhHhhhhhccccccccceEEe-eCCC-eeEEEE--CCCEEEEE-cCCcEEEEE
Confidence            68999999999999999987 45669875433           11223 3556 999999  89999999 889999999


Q ss_pred             CCC------------------CCccEEEEEcCCCeEEEEecCCCceeeEEeccCCceeEEEEEEecCCCeeEEccccceE
Q 042146          171 AST------------------PNGKFILVGTLDNTLRLWNYSTRKILKTYSGYTNSKYCISSTFSVTNGKYIVSHRDPVI  232 (262)
Q Consensus       171 ~~~------------------~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~  232 (262)
                      +++                  +..+.+++++.||.|.+||+.++....                          +...|+
T Consensus       113 v~sl~~~~~~~~~~~~v~~i~~~~p~~av~~~dG~L~v~dl~~~~~~~--------------------------~~~~Vs  166 (388)
T 1xip_A          113 LEELSEFRTVTSFEKPVFQLKNVNNTLVILNSVNDLSALDLRTKSTKQ--------------------------LAQNVT  166 (388)
T ss_dssp             SSSTTCEEEEEECSSCEEEEEECSSEEEEEETTSEEEEEETTTCCEEE--------------------------EEESEE
T ss_pred             chhhhccCccceeecceeeEEecCCCEEEEECCCCEEEEEccCCcccc--------------------------ccCCce
Confidence            876                  122238888999999999999877643                          334799


Q ss_pred             EEEEcCCCCeEEEeeecCCCcEEEEeecc
Q 042146          233 SVASHPAKNIIASGALDNDRTMKIWTQEK  261 (262)
Q Consensus       233 ~~~~~p~~~~l~~~~~d~d~~i~iw~~~~  261 (262)
                      +++|||+|  ++.|.  .||++++|+.+.
T Consensus       167 ~v~WSpkG--~~vg~--~dg~i~~~~~~~  191 (388)
T 1xip_A          167 SFDVTNSQ--LAVLL--KDRSFQSFAWRN  191 (388)
T ss_dssp             EEEECSSE--EEEEE--TTSCEEEEEEET
T ss_pred             EEEEcCCc--eEEEE--cCCcEEEEcCCC
Confidence            99999999  66777  899999998753

>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A*

Probab=99.44  E-value=1.4e-09  Score=82.74  Aligned_cols=212  Identities=13%  Similarity=0.065  Sum_probs=132.4

Q ss_pred             CcCceEEEEEccCCCeEEEecCCCeEEEeecCCCCC-CCCC-CCCCCcccc-CCcccccc----ceeEEEEecCCCccce
Q 042146           22 HLRAVSYVKFSHDGRLLTSSSAEKTLLTYSLSSISN-FDST-PPSPLQKFT-GHEQGISD----LATIRLWDVPTATSLK   94 (262)
Q Consensus        22 h~~~v~~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~-~~~~-~~~~~~~~~-~~~~~v~~----~~~i~v~d~~~~~~~~   94 (262)
                      +...+.++++.+++.++++...++.|..|+.+.... .... .......+. .....+..    ...|.+||. +++...
T Consensus        55 ~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~d~-~g~~~~  133 (299)
T 2z2n_A           55 PDAKVMCLTISSDGEVWFTENAANKIGRITKKGIIKEYTLPNPDSAPYGITEGPNGDIWFTEMNGNRIGRITD-DGKIRE  133 (299)
T ss_dssp             TTCCEEEEEECTTSCEEEEETTTTEEEEECTTSCEEEEECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECT-TCCEEE
T ss_pred             ccCceeeEEECCCCCEEEeCCCCCeEEEECCCCcEEEEeCCCcCCCceeeEECCCCCEEEEecCCceEEEECC-CCCEEE
Confidence            456789999999999888877789999998753110 0000 000111111 11111111    126778887 443322


Q ss_pred             -ecccCCcceEEEEEeCCCCEEEeecCCCeEEEEECCCCeeeee-eecCCCCeeeEEEccCCCEEEEEeCCCeEEEEeCC
Q 042146           95 -TLIGHTNYVFCINFNPQSNRIVSDTFNETIRIWDIKTGKCLKV-LPAHSDPVTAIDFNRDGTMIVTSSYDGLYRILDAS  172 (262)
Q Consensus        95 -~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~-~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~d~~  172 (262)
                       ........+..+++++++++.++...++.|..||. +++.... .......+..++++++++++++...++.|..||..
T Consensus       134 ~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~  212 (299)
T 2z2n_A          134 YELPNKGSYPSFITLGSDNALWFTENQNNAIGRITE-SGDITEFKIPTPASGPVGITKGNDDALWFVEIIGNKIGRITTS  212 (299)
T ss_dssp             EECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECT-TCCEEEEECSSTTCCEEEEEECTTSSEEEEETTTTEEEEECTT
T ss_pred             ecCCCCCCCCceEEEcCCCCEEEEeCCCCEEEEEcC-CCcEEEeeCCCCCCcceeEEECCCCCEEEEccCCceEEEECCC
Confidence             22334467899999999988888777889999998 6655432 23344568899999999877776678889988873


Q ss_pred             C--------------------CCccEEEEEcCCCeEEEEecCCCceeeEEeccCCceeEEEEEEecCCCeeEEccccceE
Q 042146          173 T--------------------PNGKFILVGTLDNTLRLWNYSTRKILKTYSGYTNSKYCISSTFSVTNGKYIVSHRDPVI  232 (262)
Q Consensus       173 ~--------------------~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~  232 (262)
                      .                    ++++.+++...++.|..||. +++ +..+....                    +...+.
T Consensus       213 g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~d~-~g~-~~~~~~~~--------------------~~~~~~  270 (299)
T 2z2n_A          213 GEITEFKIPTPNARPHAITAGAGIDLWFTEWGANKIGRLTS-NNI-IEEYPIQI--------------------KSAEPH  270 (299)
T ss_dssp             CCEEEEECSSTTCCEEEEEECSTTCEEEEETTTTEEEEEET-TTE-EEEEECSS--------------------SSCCEE
T ss_pred             CcEEEEECCCCCCCceeEEECCCCCEEEeccCCceEEEECC-CCc-eEEEeCCC--------------------CCCccc
Confidence            2                    45555555546677888877 343 22222100                    345688


Q ss_pred             EEEEcCCCCeEEEeeecCCCcEEEEeecc
Q 042146          233 SVASHPAKNIIASGALDNDRTMKIWTQEK  261 (262)
Q Consensus       233 ~~~~~p~~~~l~~~~~d~d~~i~iw~~~~  261 (262)
                      ++++ +++.++++.+   .+.|..++.++
T Consensus       271 ~i~~-~~g~l~v~~~---~~~l~~~~~~~  295 (299)
T 2z2n_A          271 GICF-DGETIWFAME---CDKIGKLTLIK  295 (299)
T ss_dssp             EEEE-CSSCEEEEET---TTEEEEEEEC-
T ss_pred             eEEe-cCCCEEEEec---CCcEEEEEcCc
Confidence            9999 8888777664   35666666653

>2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H*

Probab=99.43  E-value=2.2e-10  Score=90.32  Aligned_cols=94  Identities=10%  Similarity=0.081  Sum_probs=59.3

Q ss_pred             ceeeec--ccccceecccCcCceEEEEEccCCCeEEEec----------CCCeEEEeecCCCCCCCCCCCCCCccccCCc
Q 042146            6 SLESFR--PYTLTQTLNGHLRAVSYVKFSHDGRLLTSSS----------AEKTLLTYSLSSISNFDSTPPSPLQKFTGHE   73 (262)
Q Consensus         6 ~i~~~~--~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~----------~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~   73 (262)
                      ++..++  ..+++.++..-..+  .++++||+++++++.          .++.|.+||...                   
T Consensus        48 ~v~v~D~~t~~~~~~i~~g~~p--~i~~spDg~~lyv~n~~~~~~~rg~~~~~v~viD~~t-------------------  106 (373)
T 2mad_H           48 QQWVLDAGSGSILGHVNGGFLP--NPVAAHSGSEFALASTSFSRIAKGKRTDYVEVFDPVT-------------------  106 (373)
T ss_pred             EEEEEECCCCeEEEEecCCCCC--CeEECCCCCEEEEEeccccccccCCCCCeEEEEECCC-------------------
Confidence            445554  56666666654444  899999999998875          256677776543                   


Q ss_pred             cccccceeEEEEecCCCccceeccc-------CCcceEEEEEeCCCCEEEeecC--CCeEEEEECCCCeeeee
Q 042146           74 QGISDLATIRLWDVPTATSLKTLIG-------HTNYVFCINFNPQSNRIVSDTF--NETIRIWDIKTGKCLKV  137 (262)
Q Consensus        74 ~~v~~~~~i~v~d~~~~~~~~~~~~-------~~~~v~~~~~~~~~~~l~~~~~--dg~i~vwd~~~~~~~~~  137 (262)
                                      .+.+..+.-       +......++++|+|++|+++..  ++.|.++| .+++.+..
T Consensus       107 ----------------~~~~~~i~~~~~~~~~~g~~p~~~~~spDG~~l~v~n~~~~~~v~viD-~t~~~~~~  162 (373)
T 2mad_H          107 ----------------FLPIADIELPDAPRFDVGPYSWMNANTPNNADLLFFQFAAGPAVGLVV-QGGSSDDQ  162 (373)
T ss_pred             ----------------CcEEEEEECCCccccccCCCccceEECCCCCEEEEEecCCCCeEEEEE-CCCCEEeE
Confidence                            222222110       0122346788888888877653  46788888 88777666

>3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B

Probab=99.43  E-value=1.1e-10  Score=89.17  Aligned_cols=168  Identities=14%  Similarity=0.043  Sum_probs=108.3

Q ss_pred             CcCceEEEEEccCCCeEEEecCCCeEEEeecCCCCCCCCCCCCCCccccCCccccccceeEE-EEecCCCccceecccCC
Q 042146           22 HLRAVSYVKFSHDGRLLTSSSAEKTLLTYSLSSISNFDSTPPSPLQKFTGHEQGISDLATIR-LWDVPTATSLKTLIGHT  100 (262)
Q Consensus        22 h~~~v~~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~i~-v~d~~~~~~~~~~~~~~  100 (262)
                      +...+.+++++|+++++++.  ++.|.+||.++..                         +. +......       ...
T Consensus        52 ~~~~~~~i~~~~dG~l~v~~--~~~l~~~d~~~g~-------------------------~~~~~~~~~~-------~~~   97 (297)
T 3g4e_A           52 MDAPVSSVALRQSGGYVATI--GTKFCALNWKEQS-------------------------AVVLATVDND-------KKN   97 (297)
T ss_dssp             CSSCEEEEEEBTTSSEEEEE--TTEEEEEETTTTE-------------------------EEEEEECCTT-------CSS
T ss_pred             CCCceEEEEECCCCCEEEEE--CCeEEEEECCCCc-------------------------EEEEEecCCC-------CCC
Confidence            45678999999999855543  4567777553210                         00 0111000       112


Q ss_pred             cceEEEEEeCCCCEEEeecC-----------CCeEEEEECCCCeeeeeeecCCCCeeeEEEccCCCEEE-EEeCCCeEEE
Q 042146          101 NYVFCINFNPQSNRIVSDTF-----------NETIRIWDIKTGKCLKVLPAHSDPVTAIDFNRDGTMIV-TSSYDGLYRI  168 (262)
Q Consensus       101 ~~v~~~~~~~~~~~l~~~~~-----------dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~-~~~~dg~i~~  168 (262)
                      ..++.++++|+|+++++...           .+.|..++.. ++... +..+......++|+|+++.|+ +.+.++.|..
T Consensus        98 ~~~~di~~d~dG~l~~~~~~~~~~~~~~~~~~~~l~~~d~~-g~~~~-~~~~~~~pngi~~spdg~~lyv~~~~~~~i~~  175 (297)
T 3g4e_A           98 NRFNDGKVDPAGRYFAGTMAEETAPAVLERHQGALYSLFPD-HHVKK-YFDQVDISNGLDWSLDHKIFYYIDSLSYSVDA  175 (297)
T ss_dssp             EEEEEEEECTTSCEEEEEEECCSBTTBCCTTCEEEEEECTT-SCEEE-EEEEESBEEEEEECTTSCEEEEEEGGGTEEEE
T ss_pred             CCCCCEEECCCCCEEEecCCcccccccccCCCcEEEEEECC-CCEEE-EeeccccccceEEcCCCCEEEEecCCCCcEEE
Confidence            45789999999997765422           2345555543 33322 223334568899999998665 4556788999


Q ss_pred             EeCC--C-------------------------CCccEEEEEcCCCeEEEEecCCCceeeEEeccCCceeEEEEEEecCCC
Q 042146          169 LDAS--T-------------------------PNGKFILVGTLDNTLRLWNYSTRKILKTYSGYTNSKYCISSTFSVTNG  221 (262)
Q Consensus       169 ~d~~--~-------------------------~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  221 (262)
                      |++.  .                         +++++.++....+.|..||..+++.+..+..                 
T Consensus       176 ~~~d~~~G~~~~~~~~~~~~~~~~~p~g~~~d~~G~lwva~~~~~~v~~~d~~tG~~~~~i~~-----------------  238 (297)
T 3g4e_A          176 FDYDLQTGQISNRRSVYKLEKEEQIPDGMCIDAEGKLWVACYNGGRVIRLDPVTGKRLQTVKL-----------------  238 (297)
T ss_dssp             EEECTTTCCEEEEEEEEECCGGGCEEEEEEEBTTSCEEEEEETTTEEEEECTTTCCEEEEEEC-----------------
T ss_pred             EeccCCCCcccCcEEEEECCCCCCCCCeeEECCCCCEEEEEcCCCEEEEEcCCCceEEEEEEC-----------------
Confidence            9863  1                         4666666666677899999988888888765                 


Q ss_pred             eeEEccccceEEEEEc-CCCCeEEEee
Q 042146          222 KYIVSHRDPVISVASH-PAKNIIASGA  247 (262)
Q Consensus       222 ~~~~~~~~~v~~~~~~-p~~~~l~~~~  247 (262)
                           +...+++++|. |+++.|+.++
T Consensus       239 -----p~~~~t~~~f~g~d~~~L~vt~  260 (297)
T 3g4e_A          239 -----PVDKTTSCCFGGKNYSEMYVTC  260 (297)
T ss_dssp             -----SSSBEEEEEEESGGGCEEEEEE
T ss_pred             -----CCCCceEEEEeCCCCCEEEEEc
Confidence                 55678999998 8877665544

>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482}

Probab=99.42  E-value=3e-10  Score=90.65  Aligned_cols=227  Identities=9%  Similarity=0.064  Sum_probs=135.0

Q ss_pred             CceEEEEEccCCCeEEEecCCCeEEEeecCCCCCCCCC--CCCCCccccCCccccc--cc-e--eEEEEecCCCccceec
Q 042146           24 RAVSYVKFSHDGRLLTSSSAEKTLLTYSLSSISNFDST--PPSPLQKFTGHEQGIS--DL-A--TIRLWDVPTATSLKTL   96 (262)
Q Consensus        24 ~~v~~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~--~~~~~~~~~~~~~~v~--~~-~--~i~v~d~~~~~~~~~~   96 (262)
                      .....++|+++++++++...++.|++||.+........  ...+...+......+.  .. .  .|.+++...+.....+
T Consensus       131 ~~P~~la~d~~g~lyv~d~~~~~I~~id~~~g~~~~~~~~~~~~~ia~~~~g~~l~~~d~~~~~~I~~~d~~~~~~~~~~  210 (409)
T 3hrp_A          131 KYMWGIAAVGNNTVLAYQRDDPRVRLISVDDNKVTTVHPGFKGGKPAVTKDKQRVYSIGWEGTHTVYVYMKASGWAPTRI  210 (409)
T ss_dssp             CCEEEEEECSTTEEEEEETTTTEEEEEETTTTEEEEEEETCCBCBCEECTTSSEEEEEBSSTTCEEEEEEGGGTTCEEEE
T ss_pred             CCceEEEEeCCCCEEEEecCCCcEEEEECCCCEEEEeeccCCCCceeEecCCCcEEEEecCCCceEEEEEcCCCceeEEe
Confidence            46789999999998888888899999998753221110  0000011111111111  11 1  5777777655433333


Q ss_pred             ----ccCCcceEEEEEeCCCCEEEeecCCCeEEEEECCCCeeeee----eecCCCCe--eeEEEccC-CCEEEEEeCCCe
Q 042146           97 ----IGHTNYVFCINFNPQSNRIVSDTFNETIRIWDIKTGKCLKV----LPAHSDPV--TAIDFNRD-GTMIVTSSYDGL  165 (262)
Q Consensus        97 ----~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~----~~~~~~~v--~~~~~~~~-~~~l~~~~~dg~  165 (262)
                          ......+.+++++|++..|+.+..++.|+.||+.++.....    ..++...-  ..++|+|+ +.++++-..++.
T Consensus       211 g~~~~~~~~~p~~iav~p~~g~lyv~d~~~~I~~~d~~~~~~~~~~~~~~~g~~~~~P~~~ia~~p~~g~lyv~d~~~~~  290 (409)
T 3hrp_A          211 GQLGSTFSGKIGAVALDETEEWLYFVDSNKNFGRFNVKTQEVTLIKQLELSGSLGTNPGPYLIYYFVDSNFYMSDQNLSS  290 (409)
T ss_dssp             EECCTTSCSCCCBCEECTTSSEEEEECTTCEEEEEETTTCCEEEEEECCCCSCCCCSSCCEEEEETTTTEEEEEETTTTE
T ss_pred             eeccchhcCCcEEEEEeCCCCeEEEEECCCcEEEEECCCCCEEEEecccccCCCCCCccccEEEeCCCCEEEEEeCCCCE
Confidence                21445678899999555555577788999999987653322    22222222  39999995 566666667889


Q ss_pred             EEEEeCCC---------------------------------CCccEEEEEc-CCCeEEEEecCCCceeeEEeccCCceeE
Q 042146          166 YRILDAST---------------------------------PNGKFILVGT-LDNTLRLWNYSTRKILKTYSGYTNSKYC  211 (262)
Q Consensus       166 i~~~d~~~---------------------------------~~~~~l~~~~-~dg~i~i~d~~~~~~~~~~~~~~~~~~~  211 (262)
                      |+.|+...                                 ++++++++-. .++.|+.|++.+++. .++.+.....  
T Consensus       291 I~~~~~~g~~~~~~g~~~~~g~~dg~~~~~~~~~P~gia~d~dG~lyvad~~~~~~I~~~~~~~G~v-~~~~g~~~~~--  367 (409)
T 3hrp_A          291 VYKITPDGECEWFCGSATQKTVQDGLREEALFAQPNGMTVDEDGNFYIVDGFKGYCLRKLDILDGYV-STVAGQVDVA--  367 (409)
T ss_dssp             EEEECTTCCEEEEEECTTCCSCBCEEGGGCBCSSEEEEEECTTCCEEEEETTTTCEEEEEETTTTEE-EEEEECTTCB--
T ss_pred             EEEEecCCCEEEEEeCCCCCCcCCCcccccEeCCCeEEEEeCCCCEEEEeCCCCCEEEEEECCCCEE-EEEeCCCCCC--
Confidence            99998542                                 4566666666 677888888766653 3333221000  


Q ss_pred             EEEEEecCCCeeEEccccceEEEEEcCCCCeEEEeeecCCCcEEEEeec
Q 042146          212 ISSTFSVTNGKYIVSHRDPVISVASHPAKNIIASGALDNDRTMKIWTQE  260 (262)
Q Consensus       212 ~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~d~d~~i~iw~~~  260 (262)
                           ...++......-.....++++|++.++++-.  .++.|+.++++
T Consensus       368 -----g~~~g~~~~~~~~~P~giavd~~g~lyVad~--~n~~Ir~i~~e  409 (409)
T 3hrp_A          368 -----SQIDGTPLEATFNYPYDICYDGEGGYWIAEA--WGKAIRKYAVE  409 (409)
T ss_dssp             -----SCCCBSTTTCCBSSEEEEEECSSSEEEEEES--TTCEEEEEEEC
T ss_pred             -----CcCCCChhceEeCCceEEEEcCCCCEEEEEC--CCCeEEEEEeC
Confidence                 0000000000124688999999988777776  78888887763

>1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum}

Probab=99.42  E-value=1.3e-11  Score=106.04  Aligned_cols=182  Identities=16%  Similarity=0.166  Sum_probs=108.7

Q ss_pred             CcCceEEEEEccCCCeEEEecCC-CeEEEeecCCCCCCCCCCCCCCccccCCccccccceeEEEEecCCCccceecccCC
Q 042146           22 HLRAVSYVKFSHDGRLLTSSSAE-KTLLTYSLSSISNFDSTPPSPLQKFTGHEQGISDLATIRLWDVPTATSLKTLIGHT  100 (262)
Q Consensus        22 h~~~v~~~~~~~~~~~l~s~~~d-~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~i~v~d~~~~~~~~~~~~~~  100 (262)
                      |...+..++|||||++||.++.+ |.                               ....|++||+.+++.+... .+.
T Consensus       161 ~~~~~~~~~~SPDG~~la~~~~~~G~-------------------------------e~~~i~v~dl~tg~~~~~~-~~~  208 (741)
T 1yr2_A          161 GATALDAWAASDDGRLLAYSVQDGGS-------------------------------DWRTVKFVGVADGKPLADE-LKW  208 (741)
T ss_dssp             --EEEEEEEECTTSSEEEEEEEETTC-------------------------------SEEEEEEEETTTCCEEEEE-EEE
T ss_pred             CCEEEEeEEECCCCCEEEEEEcCCCC-------------------------------ceEEEEEEECCCCCCCCcc-CCC
Confidence            44478899999999999887643 21                               0002445566666554321 111


Q ss_pred             cceEEEEEeCCCCEEEeecCCCe--------------EEEEECCCCe----eeeeeecCCCCeeeEEEccCCCEEEEEeC
Q 042146          101 NYVFCINFNPQSNRIVSDTFNET--------------IRIWDIKTGK----CLKVLPAHSDPVTAIDFNRDGTMIVTSSY  162 (262)
Q Consensus       101 ~~v~~~~~~~~~~~l~~~~~dg~--------------i~vwd~~~~~----~~~~~~~~~~~v~~~~~~~~~~~l~~~~~  162 (262)
                      ..+..++|+|| +.|+.++.++.              |++|++.+++    .+.....+...+..+.|+|||++|+..+.
T Consensus       209 ~~~~~~~wspD-~~l~~~~~~~~~~~~~~~~~~~~~~v~~~~lgt~~~~~~lv~~~~~~~~~~~~~~~SpDG~~l~~~~~  287 (741)
T 1yr2_A          209 VKFSGLAWLGN-DALLYSRFAEPKEGQAFQALNYNQTVWLHRLGTPQSADQPVFATPELPKRGHGASVSSDGRWVVITSS  287 (741)
T ss_dssp             EESCCCEESTT-SEEEEEECCCC--------CCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECTTSCEEEEEEE
T ss_pred             ceeccEEEECC-CEEEEEEecCcccccccccCCCCCEEEEEECCCCchhCEEEeccCCCCeEEEEEEECCCCCEEEEEEE
Confidence            22357889999 88887766543              8999987665    22222223345889999999998888775


Q ss_pred             CC-----eEEEEeCCC---------------------CCccEEEEEcC----CCeEEEEecCCCc-eeeEEeccCCceeE
Q 042146          163 DG-----LYRILDAST---------------------PNGKFILVGTL----DNTLRLWNYSTRK-ILKTYSGYTNSKYC  211 (262)
Q Consensus       163 dg-----~i~~~d~~~---------------------~~~~~l~~~~~----dg~i~i~d~~~~~-~~~~~~~~~~~~~~  211 (262)
                      ++     .|.+||+..                     ++++.|+..+.    ++.|.+||+.++. ....+..       
T Consensus       288 ~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~~~~~~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~l~~-------  360 (741)
T 1yr2_A          288 EGTDPVNTVHVARVTNGKIGPVTALIPDLKAQWDFVDGVGDQLWFVSGDGAPLKKIVRVDLSGSTPRFDTVVP-------  360 (741)
T ss_dssp             CTTCSCCEEEEEEEETTEECCCEEEECSSSSCEEEEEEETTEEEEEECTTCTTCEEEEEECSSSSCEEEEEEC-------
T ss_pred             ccCCCcceEEEEECCCCCCcccEEecCCCCceEEEEeccCCEEEEEECCCCCCCEEEEEeCCCCccccEEEec-------
Confidence            44     899998743                     23444444433    2346666665531 1122211       


Q ss_pred             EEEEEecCCCeeEEccccceEEEEEcCCCCeEEEeeecCCCcEEEEeec
Q 042146          212 ISSTFSVTNGKYIVSHRDPVISVASHPAKNIIASGALDNDRTMKIWTQE  260 (262)
Q Consensus       212 ~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~d~d~~i~iw~~~  260 (262)
                                    .+...+..++|+ ++.++++..  .|+..+||.++
T Consensus       361 --------------~~~~~l~~~~~~-~~~lv~~~~--~dg~~~l~~~~  392 (741)
T 1yr2_A          361 --------------ESKDNLESVGIA-GNRLFASYI--HDAKSQVLAFD  392 (741)
T ss_dssp             --------------CCSSEEEEEEEE-BTEEEEEEE--ETTEEEEEEEE
T ss_pred             --------------CCCCeEEEEEEE-CCEEEEEEE--ECCEEEEEEEe
Confidence                          133445566776 555666666  67777777653

>2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus}

Probab=99.41  E-value=9.5e-12  Score=106.08  Aligned_cols=190  Identities=9%  Similarity=0.003  Sum_probs=113.4

Q ss_pred             EEEEEccCCCeEEEecCCCeEEEeecCCCCCCCCCCCCCCccccCCccccccceeEEEEecCCCc----cceecccCCcc
Q 042146           27 SYVKFSHDGRLLTSSSAEKTLLTYSLSSISNFDSTPPSPLQKFTGHEQGISDLATIRLWDVPTAT----SLKTLIGHTNY  102 (262)
Q Consensus        27 ~~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~i~v~d~~~~~----~~~~~~~~~~~  102 (262)
                      ..++|+|||+.|+.++.|..      .        ....        ........|++|++.+++    .+.....+...
T Consensus       171 ~~~~wspDg~~l~~~~~d~~------~--------~~~~--------~~~~~~~~v~~~~l~t~~~~~~lv~~~~~~~~~  228 (695)
T 2bkl_A          171 ATPKWTPDSKGFYYEWLPTD------P--------SIKV--------DERPGYTTIRYHTLGTEPSKDTVVHERTGDPTT  228 (695)
T ss_dssp             CCCEECTTSSEEEEEECCCC------T--------TSCG--------GGGGGGCEEEEEETTSCGGGCEEEECCCCCTTC
T ss_pred             cceEEecCCCEEEEEEecCC------C--------CCcc--------ccCCCCCEEEEEECCCCchhceEEEecCCCCEE
Confidence            68999999999999887653      0        0000        000111246777776665    22333445567


Q ss_pred             eEEEEEeCCCCEEEeecCCC----eEEEEECCCCeeeeeeecCCCCeeeEEEccCCCEEEEEe---CCCeEEEEeCCCC-
Q 042146          103 VFCINFNPQSNRIVSDTFNE----TIRIWDIKTGKCLKVLPAHSDPVTAIDFNRDGTMIVTSS---YDGLYRILDASTP-  174 (262)
Q Consensus       103 v~~~~~~~~~~~l~~~~~dg----~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~---~dg~i~~~d~~~~-  174 (262)
                      +..+.|+|+|++|+.++.++    .|.+|+..+++. ..+..+...+....+ +++.+++.+.   .++.|.+||+..+ 
T Consensus       229 ~~~~~~SpDG~~l~~~~~~~~~~~~l~~~~~~~~~~-~~l~~~~~~~~~~~~-~~g~l~~~s~~~~~~~~l~~~d~~~~~  306 (695)
T 2bkl_A          229 FLQSDLSRDGKYLFVYILRGWSENDVYWKRPGEKDF-RLLVKGVGAKYEVHA-WKDRFYVLTDEGAPRQRVFEVDPAKPA  306 (695)
T ss_dssp             EEEEEECTTSCCEEEEEEETTTEEEEEEECTTCSSC-EEEEECSSCCEEEEE-ETTEEEEEECTTCTTCEEEEEBTTBCS
T ss_pred             EEEEEECCCCCEEEEEEeCCCCceEEEEEcCCCCce-EEeecCCCceEEEEe-cCCcEEEEECCCCCCCEEEEEeCCCCC
Confidence            88999999999998877665    678887655543 344445555666666 6666444433   2578999998542 


Q ss_pred             ----------------------CccEEEEEcCCCeEEEEecC-CCceeeEEeccCCceeEEEEEEecCCCeeEEccccce
Q 042146          175 ----------------------NGKFILVGTLDNTLRLWNYS-TRKILKTYSGYTNSKYCISSTFSVTNGKYIVSHRDPV  231 (262)
Q Consensus       175 ----------------------~~~~l~~~~~dg~i~i~d~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v  231 (262)
                                            ++.++++...|+..+||.+. .++....+..+                     ....+
T Consensus       307 ~~~~~~l~~~~~~~~l~~~~~~~~~lv~~~~~dg~~~l~~~~~~g~~~~~l~~~---------------------~~~~v  365 (695)
T 2bkl_A          307 RASWKEIVPEDSSASLLSVSIVGGHLSLEYLKDATSEVRVATLKGKPVRTVQLP---------------------GVGAA  365 (695)
T ss_dssp             GGGCEEEECCCSSCEEEEEEEETTEEEEEEEETTEEEEEEEETTCCEEEECCCS---------------------SSSEE
T ss_pred             ccCCeEEecCCCCCeEEEEEEECCEEEEEEEECCEEEEEEEeCCCCeeEEecCC---------------------CCeEE
Confidence                                  23344444555555554332 23333333220                     24567


Q ss_pred             EEEEEcCCCCeEEEee--ecCCCcEEEEeecc
Q 042146          232 ISVASHPAKNIIASGA--LDNDRTMKIWTQEK  261 (262)
Q Consensus       232 ~~~~~~p~~~~l~~~~--~d~d~~i~iw~~~~  261 (262)
                      ..++++|+++.++...  ....+.|++|++..
T Consensus       366 ~~~~~s~d~~~l~~~~ss~~~P~~v~~~d~~~  397 (695)
T 2bkl_A          366 SNLMGLEDLDDAYYVFTSFTTPRQIYKTSVST  397 (695)
T ss_dssp             CCCBSCTTCSEEEEEEEETTEEEEEEEEETTT
T ss_pred             EEeecCCCCCEEEEEEcCCCCCCEEEEEECCC
Confidence            7788999987766332  11357789998753

>1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A*

Probab=99.40  E-value=1.7e-10  Score=95.56  Aligned_cols=154  Identities=14%  Similarity=0.109  Sum_probs=104.1

Q ss_pred             EEecCCCccceecccCCcceEEEEEeCCCCEEEeecCCCeEEEEECC--CCeeeeeeecCCCCeeeEEEc----cCCCEE
Q 042146           84 LWDVPTATSLKTLIGHTNYVFCINFNPQSNRIVSDTFNETIRIWDIK--TGKCLKVLPAHSDPVTAIDFN----RDGTMI  157 (262)
Q Consensus        84 v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~--~~~~~~~~~~~~~~v~~~~~~----~~~~~l  157 (262)
                      ++|..+++.+.++.. ...+..+.++|+++++++++.++.|.+||+.  +++.+..+.... ....++|+    |+|+++
T Consensus       181 viD~~t~~v~~~i~~-g~~p~~v~~SpDGr~lyv~~~dg~V~viD~~~~t~~~v~~i~~G~-~P~~ia~s~~~~pDGk~l  258 (567)
T 1qks_A          181 LIDGSTYEIKTVLDT-GYAVHISRLSASGRYLFVIGRDGKVNMIDLWMKEPTTVAEIKIGS-EARSIETSKMEGWEDKYA  258 (567)
T ss_dssp             EEETTTCCEEEEEEC-SSCEEEEEECTTSCEEEEEETTSEEEEEETTSSSCCEEEEEECCS-EEEEEEECCSTTCTTTEE
T ss_pred             EEECCCCeEEEEEeC-CCCccceEECCCCCEEEEEcCCCeEEEEECCCCCCcEeEEEecCC-CCceeEEccccCCCCCEE
Confidence            335556666666543 3356689999999999999999999999995  788888776533 45789999    699988


Q ss_pred             EEEe-CCCeEEEEeCCCC-------------C-------------------ccEEEEEcCCCeEEEEecCCCceeeEEec
Q 042146          158 VTSS-YDGLYRILDASTP-------------N-------------------GKFILVGTLDNTLRLWNYSTRKILKTYSG  204 (262)
Q Consensus       158 ~~~~-~dg~i~~~d~~~~-------------~-------------------~~~l~~~~~dg~i~i~d~~~~~~~~~~~~  204 (262)
                      +++. .++.+.++|..+.             +                   ..+++.....|.|.++|....+.+....-
T Consensus       259 ~v~n~~~~~v~ViD~~t~~~~~~i~~~~~~~~~~~~~p~~rva~i~~s~~~~~~vv~~~~~g~v~~vd~~~~~~~~v~~i  338 (567)
T 1qks_A          259 IAGAYWPPQYVIMDGETLEPKKIQSTRGMTYDEQEYHPEPRVAAILASHYRPEFIVNVKETGKILLVDYTDLNNLKTTEI  338 (567)
T ss_dssp             EEEEEETTEEEEEETTTCCEEEEEECCEECTTTCCEESCCCEEEEEECSSSSEEEEEETTTTEEEEEETTCSSEEEEEEE
T ss_pred             EEEEccCCeEEEEECCCCcEEEEEeccccccccccccCCCceEEEEEcCCCCEEEEEecCCCeEEEEecCCCccceeeee
Confidence            7766 4588999986550             0                   11223333445555665554322111100


Q ss_pred             cCCceeEEEEEEecCCCeeEEccccceEEEEEcCCCCeEEEeeecCCCcEEEEeecc
Q 042146          205 YTNSKYCISSTFSVTNGKYIVSHRDPVISVASHPAKNIIASGALDNDRTMKIWTQEK  261 (262)
Q Consensus       205 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~d~d~~i~iw~~~~  261 (262)
                                           ........+.|+|++++++++.. .++.|.++|..+
T Consensus       339 ---------------------~~~~~~~d~~~~pdgr~~~va~~-~sn~V~ViD~~t  373 (567)
T 1qks_A          339 ---------------------SAERFLHDGGLDGSHRYFITAAN-ARNKLVVIDTKE  373 (567)
T ss_dssp             ---------------------ECCSSEEEEEECTTSCEEEEEEG-GGTEEEEEETTT
T ss_pred             ---------------------eccccccCceECCCCCEEEEEeC-CCCeEEEEECCC
Confidence                                 03345668899999999887764 478899999864

>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii}

Probab=99.39  E-value=2.6e-09  Score=81.26  Aligned_cols=213  Identities=11%  Similarity=0.046  Sum_probs=133.4

Q ss_pred             cCcCceEEEEEccCCCeEEEecCCCeEEEeecCCCCCCCCCCC---CCCccc-cCCccccc--c--ceeEEEEecCCCcc
Q 042146           21 GHLRAVSYVKFSHDGRLLTSSSAEKTLLTYSLSSISNFDSTPP---SPLQKF-TGHEQGIS--D--LATIRLWDVPTATS   92 (262)
Q Consensus        21 ~h~~~v~~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~---~~~~~~-~~~~~~v~--~--~~~i~v~d~~~~~~   92 (262)
                      .....+.++++.++++.+++...++.|.+|+.. ........+   .....+ ......+.  .  ...|..+|.. ++.
T Consensus        17 ~~~~~p~~i~~d~~g~l~v~~~~~~~v~~~~~~-~~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~v~~~d~~-g~~   94 (300)
T 2qc5_A           17 IPDSGPYGITSSEDGKVWFTQHKANKISSLDQS-GRIKEFEVPTPDAKVMCLIVSSLGDIWFTENGANKIGKLSKK-GGF   94 (300)
T ss_dssp             STTCCEEEEEECTTSCEEEEETTTTEEEEECTT-SCEEEEECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECTT-SCE
T ss_pred             CCCCCcceeeECCCCCEEEEcCCCCeEEEECCC-CceEEEECCCCCCcceeEEECCCCCEEEEecCCCeEEEECCC-CCe
Confidence            345678999999999988888788999999876 211110000   000111 11111111  1  1257788876 443


Q ss_pred             ce-ecccCCcceEEEEEeCCCCEEEeecCCCeEEEEECCCCeeeee-eecCCCCeeeEEEccCCCEEEEEeCCCeEEEEe
Q 042146           93 LK-TLIGHTNYVFCINFNPQSNRIVSDTFNETIRIWDIKTGKCLKV-LPAHSDPVTAIDFNRDGTMIVTSSYDGLYRILD  170 (262)
Q Consensus        93 ~~-~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~-~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~d  170 (262)
                      .. ........+..+++.++++++++...++.|..+|.. ++.... +......+..+++.++++++++...++.|..+|
T Consensus        95 ~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~-g~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~i~~~~  173 (300)
T 2qc5_A           95 TEYPLPQPDSGPYGITEGLNGDIWFTQLNGDRIGKLTAD-GTIYEYDLPNKGSYPAFITLGSDNALWFTENQNNSIGRIT  173 (300)
T ss_dssp             EEEECSSTTCCEEEEEECSTTCEEEEETTTTEEEEECTT-SCEEEEECSSTTCCEEEEEECTTSSEEEEETTTTEEEEEC
T ss_pred             EEecCCCCCCCCccceECCCCCEEEEccCCCeEEEECCC-CCEEEccCCCCCCCceeEEECCCCCEEEEecCCCeEEEEC
Confidence            21 222234678999999999988888778899999987 554422 232345789999999999766666678888888


Q ss_pred             CCC--------------------CCccEEEEEcCCCeEEEEecCCCceeeEEeccCCceeEEEEEEecCCCeeEEccccc
Q 042146          171 AST--------------------PNGKFILVGTLDNTLRLWNYSTRKILKTYSGYTNSKYCISSTFSVTNGKYIVSHRDP  230 (262)
Q Consensus       171 ~~~--------------------~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  230 (262)
                      ...                    +++...++....+.|.+||. +++.... ...                    .....
T Consensus       174 ~~g~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~i~~~~~-~g~~~~~-~~~--------------------~~~~~  231 (300)
T 2qc5_A          174 NTGKLEEYPLPTNAAAPVGITSGNDGALWFVEIMGNKIGRITT-TGEISEY-DIP--------------------TPNAR  231 (300)
T ss_dssp             TTCCEEEEECSSTTCCEEEEEECTTSSEEEEETTTTEEEEECT-TCCEEEE-ECS--------------------STTCC
T ss_pred             CCCcEEEeeCCCCCCCcceEEECCCCCEEEEccCCCEEEEEcC-CCcEEEE-ECC--------------------CCCCC
Confidence            632                    34555555445566777776 3433221 110                    03456


Q ss_pred             eEEEEEcCCCCeEEEeeecCCCcEEEEeec
Q 042146          231 VISVASHPAKNIIASGALDNDRTMKIWTQE  260 (262)
Q Consensus       231 v~~~~~~p~~~~l~~~~~d~d~~i~iw~~~  260 (262)
                      +.++++++++.++++..  .++.|..|+.+
T Consensus       232 ~~~i~~d~~g~l~v~~~--~~~~i~~~~~~  259 (300)
T 2qc5_A          232 PHAITAGKNSEIWFTEW--GANQIGRITND  259 (300)
T ss_dssp             EEEEEECSTTCEEEEET--TTTEEEEECTT
T ss_pred             ceEEEECCCCCEEEecc--CCCeEEEECCC
Confidence            78899999988766665  56788887753

>3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV}

Probab=99.39  E-value=2.2e-10  Score=87.88  Aligned_cols=183  Identities=8%  Similarity=0.008  Sum_probs=117.7

Q ss_pred             CCceeeecccccceecccCcCceEEEEEccCCCeEEEecCCCeEEEeecCCCCCCCCCCCCCCccccCCccccccceeEE
Q 042146            4 DRSLESFRPYTLTQTLNGHLRAVSYVKFSHDGRLLTSSSAEKTLLTYSLSSISNFDSTPPSPLQKFTGHEQGISDLATIR   83 (262)
Q Consensus         4 d~~i~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~i~   83 (262)
                      ++.|..|.+......+..+...+..++++++|+++++...++.|.+|+.+..                          +.
T Consensus        66 ~~~i~~~~~~g~~~~~~~~~~~~~gl~~d~dG~l~v~~~~~~~v~~~~~~g~--------------------------~~  119 (305)
T 3dr2_A           66 GRRVLGWREDGTVDVLLDATAFTNGNAVDAQQRLVHCEHGRRAITRSDADGQ--------------------------AH  119 (305)
T ss_dssp             TTEEEEEETTSCEEEEEESCSCEEEEEECTTSCEEEEETTTTEEEEECTTSC--------------------------EE
T ss_pred             CCEEEEEeCCCCEEEEeCCCCccceeeECCCCCEEEEECCCCEEEEECCCCC--------------------------EE
Confidence            3456666543334555556677899999999997776666678888854310                          00


Q ss_pred             EE-ecCCCccceecccCCcceEEEEEeCCCCEEEe----ecC-------------CCeEEEEECCCCeeeeeeecCCCCe
Q 042146           84 LW-DVPTATSLKTLIGHTNYVFCINFNPQSNRIVS----DTF-------------NETIRIWDIKTGKCLKVLPAHSDPV  145 (262)
Q Consensus        84 v~-d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~----~~~-------------dg~i~vwd~~~~~~~~~~~~~~~~v  145 (262)
                      .+ +...+       .....++.++++|+|++.++    |..             .+.|..+|..+++.....  .....
T Consensus       120 ~~~~~~~~-------~~~~~~~~i~~d~dG~l~~td~~~g~~~~~~~~~~~~~~~~~~v~~~d~~~g~~~~~~--~~~~p  190 (305)
T 3dr2_A          120 LLVGRYAG-------KRLNSPNDLIVARDGAIWFTDPPFGLRKPSQGCPADPELAHHSVYRLPPDGSPLQRMA--DLDHP  190 (305)
T ss_dssp             EEECEETT-------EECSCCCCEEECTTSCEEEECCSGGGSCGGGSCCCCCSSSCEEEEEECSSSCCCEEEE--EESSE
T ss_pred             EEEeccCC-------CccCCCCCEEECCCCCEEEeCcCCCccccccccccccccCCCeEEEEcCCCCcEEEEe--cCCCC
Confidence            00 00000       01134667999999998886    432             356888888766644333  33456


Q ss_pred             eeEEEccCCCEEEEEeCC------CeEEEEeCCC-----------------------CCccEEEEEcCCCeEEEEecCCC
Q 042146          146 TAIDFNRDGTMIVTSSYD------GLYRILDAST-----------------------PNGKFILVGTLDNTLRLWNYSTR  196 (262)
Q Consensus       146 ~~~~~~~~~~~l~~~~~d------g~i~~~d~~~-----------------------~~~~~l~~~~~dg~i~i~d~~~~  196 (262)
                      ..++|+|+++.|+.+...      +.|..|++..                       ++++ |.+++.+ .|.+|+. .+
T Consensus       191 ~gl~~spdg~~lyv~~~~~~~~~~~~i~~~~~~~~~l~~~~~~~~~~~~~pdgi~~d~~G~-lwv~~~~-gv~~~~~-~g  267 (305)
T 3dr2_A          191 NGLAFSPDEQTLYVSQTPEQGHGSVEITAFAWRDGALHDRRHFASVPDGLPDGFCVDRGGW-LWSSSGT-GVCVFDS-DG  267 (305)
T ss_dssp             EEEEECTTSSEEEEEECCC---CCCEEEEEEEETTEEEEEEEEECCSSSCCCSEEECTTSC-EEECCSS-EEEEECT-TS
T ss_pred             cceEEcCCCCEEEEEecCCcCCCCCEEEEEEecCCCccCCeEEEECCCCCCCeEEECCCCC-EEEecCC-cEEEECC-CC
Confidence            889999999988877665      7899998642                       3445 3344433 4778886 46


Q ss_pred             ceeeEEeccCCceeEEEEEEecCCCeeEEccccceEEEEEcCCCCeEEEee
Q 042146          197 KILKTYSGYTNSKYCISSTFSVTNGKYIVSHRDPVISVASHPAKNIIASGA  247 (262)
Q Consensus       197 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~  247 (262)
                      +.+..+..                      . ..+.+++|+|+++.|..++
T Consensus       268 ~~~~~~~~----------------------~-~~~~~~~f~~d~~~L~it~  295 (305)
T 3dr2_A          268 QLLGHIPT----------------------P-GTASNCTFDQAQQRLFITG  295 (305)
T ss_dssp             CEEEEEEC----------------------S-SCCCEEEECTTSCEEEEEE
T ss_pred             CEEEEEEC----------------------C-CceeEEEEeCCCCEEEEEc
Confidence            66666553                      2 2578899999998888877

>3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ...

Probab=99.38  E-value=1.2e-10  Score=91.06  Aligned_cols=219  Identities=13%  Similarity=0.193  Sum_probs=126.0

Q ss_pred             CCceeeec--ccccceecccCcCceEEEEEccCCCeEEEec----------CCCeEEEeecCCCCCCCCCCCCCCccccC
Q 042146            4 DRSLESFR--PYTLTQTLNGHLRAVSYVKFSHDGRLLTSSS----------AEKTLLTYSLSSISNFDSTPPSPLQKFTG   71 (262)
Q Consensus         4 d~~i~~~~--~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~----------~d~~i~iw~~~~~~~~~~~~~~~~~~~~~   71 (262)
                      ++.+..++  +.+.+.++..-..+ . ++++|||+++++++          .++.|.+|                     
T Consensus        58 ~~~V~ViD~~t~~v~~~I~vG~~P-~-va~spDG~~lyVan~~~~r~~~G~~~~~Vsvi---------------------  114 (386)
T 3sjl_D           58 VTQQFVIDGEAGRVIGMIDGGFLP-N-PVVADDGSFIAHASTVFSRIARGERTDYVEVF---------------------  114 (386)
T ss_dssp             SEEEEEEETTTTEEEEEEEECSSC-E-EEECTTSSCEEEEEEEEEETTEEEEEEEEEEE---------------------
T ss_pred             CCEEEEEECCCCeEEEEEECCCCC-c-EEECCCCCEEEEEcccccccccCCCCCEEEEE---------------------
Confidence            56677775  46677777655555 4 99999999888775          24555555                     


Q ss_pred             CccccccceeEEEEecCCCccceecccC-------CcceEEEEEeCCCCEEEeecC--CCeEEEEECCCCeeeeeeecCC
Q 042146           72 HEQGISDLATIRLWDVPTATSLKTLIGH-------TNYVFCINFNPQSNRIVSDTF--NETIRIWDIKTGKCLKVLPAHS  142 (262)
Q Consensus        72 ~~~~v~~~~~i~v~d~~~~~~~~~~~~~-------~~~v~~~~~~~~~~~l~~~~~--dg~i~vwd~~~~~~~~~~~~~~  142 (262)
                                    |..+.+.+.++.-.       ......++++|||++++++..  ++.|.++|+.+++.+.++....
T Consensus       115 --------------D~~t~~v~~~I~v~~g~r~~~g~~P~~~a~spDGk~lyVan~~~~~~VsVID~~t~~vv~tI~v~g  180 (386)
T 3sjl_D          115 --------------DPVTLLPTADIELPDAPRFLVGTYPWMTSLTPDGKTLLFYQFSPAPAVGVVDLEGKAFKRMLDVPD  180 (386)
T ss_dssp             --------------CTTTCCEEEEEEETTCCCCCBSCCGGGEEECTTSSEEEEEECSSSCEEEEEETTTTEEEEEEECCS
T ss_pred             --------------ECCCCeEEEEEECCCccccccCCCCceEEEcCCCCEEEEEEcCCCCeEEEEECCCCcEEEEEECCC
Confidence                          44455544443211       123446899999999888763  6899999999999888875321


Q ss_pred             C-------CeeeEEEccCCCEEEEEeCC-CeE-----EEEeCCC-----------CCccEEEEEcCCCeEEEEecCCCc-
Q 042146          143 D-------PVTAIDFNRDGTMIVTSSYD-GLY-----RILDAST-----------PNGKFILVGTLDNTLRLWNYSTRK-  197 (262)
Q Consensus       143 ~-------~v~~~~~~~~~~~l~~~~~d-g~i-----~~~d~~~-----------~~~~~l~~~~~dg~i~i~d~~~~~-  197 (262)
                      .       .-.-++.++||++++....+ +.+     .+++...           +++++++ .+.+|.|++.|+.+.. 
T Consensus       181 ~~~~~P~g~~~~~~~~~DG~~~~v~~~~~g~v~~~~~~~~~~~~~~~~~~~~~~~~dG~~~~-vs~~g~V~v~d~~~~~~  259 (386)
T 3sjl_D          181 CYHIFPTAPDTFFMHCRDGSLAKVAFGTEGTPEITHTEVFHPEDEFLINHPAYSQKAGRLVW-PTYTGKIHQIDLSSGDA  259 (386)
T ss_dssp             EEEEEEEETTEEEEEETTSCEEEEECCSSSCCEEEECCCCSCTTSCBCSCCEEETTTTEEEE-EBTTSEEEEEECTTSSC
T ss_pred             cceeecCCCceeEEECCCCCEEEEECCCCCeEEEeecceeccccccccccceeEcCCCcEEE-EeCCCEEEEEECCCCcc
Confidence            0       00112445566555554433 443     1222111           2444444 5557899999986543 


Q ss_pred             -eeeEEe------------ccC----------CceeEE---------------EEEEecCCCeeEEc--cccceEEEEEc
Q 042146          198 -ILKTYS------------GYT----------NSKYCI---------------SSTFSVTNGKYIVS--HRDPVISVASH  237 (262)
Q Consensus       198 -~~~~~~------------~~~----------~~~~~~---------------~~~~~~~~~~~~~~--~~~~v~~~~~~  237 (262)
                       .+..+.            ...          ...+..               -..+.....+.+..  -..++..++++
T Consensus       260 ~v~~~~~~~~~~~~~~g~~p~g~q~~a~~~~~~~lyV~~~~~~~~~hk~~~~~V~viD~~t~kv~~~i~vg~~~~~lavs  339 (386)
T 3sjl_D          260 KFLPAVEALTEAERADGWRPGGWQQVAYHRALDRIYLLVDQRDEWRHKTASRFVVVLDAKTGERLAKFEMGHEIDSINVS  339 (386)
T ss_dssp             EECCCEESSCHHHHHTTEEECSSSCEEEETTTTEEEEEEEECCTTCTTSCEEEEEEEETTTCCEEEEEEEEEEECEEEEC
T ss_pred             eeecceeccccccccccccCCCcceeeECCCCCeEEEEeccccccccCCCCCEEEEEECCCCeEEEEEECCCCcceEEEC
Confidence             222221            000          000110               00111122222111  23467899999


Q ss_pred             CCCC-eEEEeeecCCCcEEEEeecc
Q 042146          238 PAKN-IIASGALDNDRTMKIWTQEK  261 (262)
Q Consensus       238 p~~~-~l~~~~~d~d~~i~iw~~~~  261 (262)
                      |+++ +|+++.+ .++.|.++|...
T Consensus       340 ~D~~~~ly~tn~-~~~~VsViD~~t  363 (386)
T 3sjl_D          340 QDEKPLLYALST-GDKTLYIHDAES  363 (386)
T ss_dssp             SSSSCEEEEEET-TTTEEEEEETTT
T ss_pred             CCCCeEEEEEcC-CCCeEEEEECCC
Confidence            9996 6776542 589999999753

>2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ...

Probab=99.32  E-value=4.9e-11  Score=93.73  Aligned_cols=117  Identities=17%  Similarity=0.200  Sum_probs=87.2

Q ss_pred             eEEEEecCCCccceecccCCcceEEEEEeCCCCEEEeec----------CCCeEEEEECCCCeeeeeeecC------CCC
Q 042146           81 TIRLWDVPTATSLKTLIGHTNYVFCINFNPQSNRIVSDT----------FNETIRIWDIKTGKCLKVLPAH------SDP  144 (262)
Q Consensus        81 ~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~----------~dg~i~vwd~~~~~~~~~~~~~------~~~  144 (262)
                      .|.+||..+++.+..+..+..+  .++++|++++++++.          .++.|.+||+.+.+.+..+...      ...
T Consensus        32 ~v~v~D~~t~~~~~~i~~g~~p--~i~~spdg~~lyv~~~~~~~~~~g~~~~~v~v~d~~t~~~~~~i~~~~~~~~~g~~  109 (361)
T 2oiz_A           32 RVHVYDYTNGKFLGMVPTAFNG--HVQVSNDGKKIYTMTTYHERITRGKRSDVVEVWDADKLTFEKEISLPPKRVQGLNY  109 (361)
T ss_dssp             EEEEEETTTCCEEEEEECCEEE--EEEECTTSSEEEEEEEEETTSSSSCEEEEEEEEETTTCCEEEEEEECTTBCCBCCC
T ss_pred             eEEEEECCCCeEEEEecCCCCC--ceEECCCCCEEEEEEecccccccCCCCCEEEEEECcCCcEEEEEEcCccccccCCC
Confidence            3555566667766666655555  899999999999876          3578999999998888777542      245


Q ss_pred             eeeEEEccCCCEEEEEeC--CCeEEEEeCCC-------------------CC-ccEEEEEcCCCeEEEEecCC-Ccee
Q 042146          145 VTAIDFNRDGTMIVTSSY--DGLYRILDAST-------------------PN-GKFILVGTLDNTLRLWNYST-RKIL  199 (262)
Q Consensus       145 v~~~~~~~~~~~l~~~~~--dg~i~~~d~~~-------------------~~-~~~l~~~~~dg~i~i~d~~~-~~~~  199 (262)
                      ...++++|+|++|+++..  ++.|.+||+.+                   |+ ...+++.+.||.+.+|++.. ++..
T Consensus       110 p~~i~~spdg~~l~v~n~~~~~~v~v~d~~~~~~~~~~i~~~~~~~v~~~p~~~~~~~~~~~dg~~~~v~~~~~g~~~  187 (361)
T 2oiz_A          110 DGLFRQTTDGKFIVLQNASPATSIGIVDVAKGDYVEDVTAAAGCWSVIPQPNRPRSFMTICGDGGLLTINLGEDGKVA  187 (361)
T ss_dssp             GGGEEECTTSSEEEEEEESSSEEEEEEETTTTEEEEEEGGGTTEEEEEECTTSSSEEEEEETTSSEEEEEECTTSSEE
T ss_pred             cceEEECCCCCEEEEECCCCCCeEEEEECCCCcEEEEEecCCCcceeEEcCCCCeeEEEECCCCcEEEEEECCCCcEe
Confidence            688999999999998874  68999999864                   11 24566777888888888765 5544

>3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus}

Probab=99.32  E-value=2.6e-10  Score=90.68  Aligned_cols=98  Identities=10%  Similarity=0.137  Sum_probs=63.4

Q ss_pred             Cceeeec--ccccceecccCcCceEEEEEccCCCeEEEec----------CCCeEEEeecCCCCCCCCCCCCCCccccCC
Q 042146            5 RSLESFR--PYTLTQTLNGHLRAVSYVKFSHDGRLLTSSS----------AEKTLLTYSLSSISNFDSTPPSPLQKFTGH   72 (262)
Q Consensus         5 ~~i~~~~--~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~----------~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~   72 (262)
                      +++..++  +.+.+.++..-..+  .++++||+++++++.          .++.|.++|.                    
T Consensus        99 ~~VsVID~~t~~vv~~I~vG~~P--gia~SpDgk~lyVan~~~~~~~~G~~~~~VsviD~--------------------  156 (426)
T 3c75_H           99 TQQFVIDGSTGRILGMTDGGFLP--HPVAAEDGSFFAQASTVFERIARGKRTDYVEVFDP--------------------  156 (426)
T ss_dssp             EEEEEEETTTTEEEEEEEECSSC--EEEECTTSSCEEEEEEEEEETTEEEEEEEEEEECT--------------------
T ss_pred             CeEEEEECCCCEEEEEEECCCCC--ceEECCCCCEEEEEeccccccccCCCCCEEEEEEC--------------------
Confidence            5666665  56677777655555  899999999888876          3456666654                    


Q ss_pred             ccccccceeEEEEecCCCccceecccC-------CcceEEEEEeCCCCEEEeecC--CCeEEEEECCCCeeeeeee
Q 042146           73 EQGISDLATIRLWDVPTATSLKTLIGH-------TNYVFCINFNPQSNRIVSDTF--NETIRIWDIKTGKCLKVLP  139 (262)
Q Consensus        73 ~~~v~~~~~i~v~d~~~~~~~~~~~~~-------~~~v~~~~~~~~~~~l~~~~~--dg~i~vwd~~~~~~~~~~~  139 (262)
                                     .+.+.+..+.-.       ......+.++||+++++++..  ++.|.+.|+.+++.+..+.
T Consensus       157 ---------------~t~~vv~~I~v~g~~r~~~g~~P~~~~~spDGk~lyV~n~~~~~~VsVID~~t~kvv~~I~  217 (426)
T 3c75_H          157 ---------------VTFLPIADIELPDAPRFLVGTYQWMNALTPDNKNLLFYQFSPAPAVGVVDLEGKTFDRMLD  217 (426)
T ss_dssp             ---------------TTCCEEEEEEETTCCCCCBSCCGGGSEECTTSSEEEEEECSSSCEEEEEETTTTEEEEEEE
T ss_pred             ---------------CCCcEEEEEECCCccccccCCCcceEEEcCCCCEEEEEecCCCCeEEEEECCCCeEEEEEE
Confidence                           344433332210       112335678888888877653  5678888888887776664

>3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A*

Probab=99.30  E-value=2.4e-10  Score=97.44  Aligned_cols=120  Identities=18%  Similarity=0.230  Sum_probs=77.1

Q ss_pred             cCcCceEEEEEccCCCeEEEecC-CCeEEEeecCCCCCCCCCCCCCCccccCCccccccceeEEEEecCCCccceecccC
Q 042146           21 GHLRAVSYVKFSHDGRLLTSSSA-EKTLLTYSLSSISNFDSTPPSPLQKFTGHEQGISDLATIRLWDVPTATSLKTLIGH   99 (262)
Q Consensus        21 ~h~~~v~~~~~~~~~~~l~s~~~-d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~i~v~d~~~~~~~~~~~~~   99 (262)
                      +|...+..++|||||++||-+.. .|.                               ....|+++|+.+++.+.... +
T Consensus       126 ~~~~~l~~~~~SpDg~~lAy~~~~~G~-------------------------------~~~~i~v~dl~tg~~~~~~~-~  173 (693)
T 3iuj_A          126 DGTTALDQLSFSRDGRILAYSLSLAGS-------------------------------DWREIHLMDVESKQPLETPL-K  173 (693)
T ss_dssp             TSCCEEEEEEECTTSSEEEEEEECSSC-------------------------------CEEEEEEEETTTCSEEEEEE-E
T ss_pred             CCcEEEEEEEECCCCCEEEEEEecCCC-------------------------------ceEEEEEEECCCCCCCcccc-C
Confidence            46667899999999998885432 111                               00034555666666443211 1


Q ss_pred             CcceEEEEEeCCCCEEEeecCCC-------------eEEEEECCCCe----eeeeeec-CCCCeeeEEEccCCCEEEEEe
Q 042146          100 TNYVFCINFNPQSNRIVSDTFNE-------------TIRIWDIKTGK----CLKVLPA-HSDPVTAIDFNRDGTMIVTSS  161 (262)
Q Consensus       100 ~~~v~~~~~~~~~~~l~~~~~dg-------------~i~vwd~~~~~----~~~~~~~-~~~~v~~~~~~~~~~~l~~~~  161 (262)
                      ......++|+ |++.|+.++.+.             .|++|++.+..    .+..... |......+.|+|||++|+...
T Consensus       174 ~~k~~~~~Ws-Dg~~l~y~~~~~~~~~~~~~~~~~~~v~~~~lgt~~~~~~~v~~~~~~~~~~~~~~~~SpDg~~l~~~~  252 (693)
T 3iuj_A          174 DVKFSGISWL-GNEGFFYSSYDKPDGSELSARTDQHKVYFHRLGTAQEDDRLVFGAIPAQHHRYVGATVTEDDRFLLISA  252 (693)
T ss_dssp             EEESCCCEEE-TTTEEEEEESSCCC-------CCCCEEEEEETTSCGGGCEEEESCSGGGCCSEEEEEECTTSCEEEEEE
T ss_pred             CceeccEEEe-CCCEEEEEEecCcccccccccCCCcEEEEEECCCCcccceEEEecCCCCCeEEEEEEEcCCCCEEEEEE
Confidence            1113567899 999888877663             49999987654    3333333 455678899999999876544


Q ss_pred             C----CCeEEEEeCCC
Q 042146          162 Y----DGLYRILDAST  173 (262)
Q Consensus       162 ~----dg~i~~~d~~~  173 (262)
                      .    ...|.++|+..
T Consensus       253 ~~~~~~~~i~~~d~~~  268 (693)
T 3iuj_A          253 ANSTSGNRLYVKDLSQ  268 (693)
T ss_dssp             ESSSSCCEEEEEETTS
T ss_pred             ccCCCCcEEEEEECCC
Confidence            2    25899999865

>2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens}

Probab=99.28  E-value=9.1e-13  Score=103.84  Aligned_cols=132  Identities=17%  Similarity=0.205  Sum_probs=78.8

Q ss_pred             CCCeEEEecCCCeEEEeecCCCCCCCCCCCCCCccccCCccccccceeEEEEecCCCccceecccCCcceEEEEEeCCCC
Q 042146           34 DGRLLTSSSAEKTLLTYSLSSISNFDSTPPSPLQKFTGHEQGISDLATIRLWDVPTATSLKTLIGHTNYVFCINFNPQSN  113 (262)
Q Consensus        34 ~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~  113 (262)
                      ++..+++++.||.|+.||..                                   +++.+..+..  ..+.+..+.+++.
T Consensus         8 ~~~~v~~gs~dg~v~a~d~~-----------------------------------tG~~~W~~~~--~~~~s~p~~~~g~   50 (369)
T 2hz6_A            8 PETLLFVSTLDGSLHAVSKR-----------------------------------TGSIKWTLKE--DPVLQVPTHVEEP   50 (369)
T ss_dssp             CTTEEEEEETTSEEEEEETT-----------------------------------TCCEEEEEEC--CCSCCCC-----C
T ss_pred             eCCEEEEEcCCCEEEEEECC-----------------------------------CCCEEEEecC--CCceecceEcCCC
Confidence            56788999999988888654                                   3444433332  2333333445677


Q ss_pred             EEEeecCCCeEEEEECCCCeeeeeeecCCC-Cee-eEEEccCCCEEEEEeCCCeEEEEeCCC----------------CC
Q 042146          114 RIVSDTFNETIRIWDIKTGKCLKVLPAHSD-PVT-AIDFNRDGTMIVTSSYDGLYRILDAST----------------PN  175 (262)
Q Consensus       114 ~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~-~v~-~~~~~~~~~~l~~~~~dg~i~~~d~~~----------------~~  175 (262)
                      .+++++.||.|+.||.++++.+..+..+.. .+. +..+. .+..+++++.++.++.||..+                |+
T Consensus        51 ~~v~~s~dg~l~a~d~~tG~~~w~~~~~~~~~~~~sp~~~-~~~~v~~g~~dg~v~a~D~~tG~~~w~~~~~~~~~~~p~  129 (369)
T 2hz6_A           51 AFLPDPNDGSLYTLGSKNNEGLTKLPFTIPELVQASPCRS-SDGILYMGKKQDIWYVIDLLTGEKQQTLSSAFADSLSPS  129 (369)
T ss_dssp             CEEECTTTCCEEEC-----CCSEECSCCHHHHHTTCSCC------CCCCEEEEEEEEECCC-------------------
T ss_pred             EEEEeCCCCEEEEEECCCCceeeeeeccCccccccCceEe-cCCEEEEEeCCCEEEEEECCCCcEEEEecCCCccccccc
Confidence            888888999999999999987766543311 111 01111 345677888899999999875                46


Q ss_pred             ccEEEEEcCCCeEEEEecCCCceeeEEe
Q 042146          176 GKFILVGTLDNTLRLWNYSTRKILKTYS  203 (262)
Q Consensus       176 ~~~l~~~~~dg~i~i~d~~~~~~~~~~~  203 (262)
                      +..+++++.++.|+.||.++|+.+..+.
T Consensus       130 ~~~v~~~~~dg~v~a~d~~tG~~~W~~~  157 (369)
T 2hz6_A          130 TSLLYLGRTEYTITMYDTKTRELRWNAT  157 (369)
T ss_dssp             ---EEEEEEEEEEECCCSSSSSCCCEEE
T ss_pred             CCEEEEEecCCEEEEEECCCCCEEEeEe
Confidence            7789999999999999999999877765

>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii}

Probab=99.26  E-value=3.8e-08  Score=74.71  Aligned_cols=211  Identities=13%  Similarity=0.073  Sum_probs=127.8

Q ss_pred             CcCceEEEEEccCCCeEEEecCCCeEEEeecCCCCC-CCCC-CCCCCcccc-CCccccc--c--ceeEEEEecCCCccce
Q 042146           22 HLRAVSYVKFSHDGRLLTSSSAEKTLLTYSLSSISN-FDST-PPSPLQKFT-GHEQGIS--D--LATIRLWDVPTATSLK   94 (262)
Q Consensus        22 h~~~v~~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~-~~~~-~~~~~~~~~-~~~~~v~--~--~~~i~v~d~~~~~~~~   94 (262)
                      +...+.++++.++++++++...++.|..+|...... .... .......+. .....+.  .  ...|..+|.. ++...
T Consensus        60 ~~~~~~~i~~~~~g~l~v~~~~~~~v~~~d~~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~-g~~~~  138 (300)
T 2qc5_A           60 PDAKVMCLIVSSLGDIWFTENGANKIGKLSKKGGFTEYPLPQPDSGPYGITEGLNGDIWFTQLNGDRIGKLTAD-GTIYE  138 (300)
T ss_dssp             TTCCEEEEEECTTSCEEEEETTTTEEEEECTTSCEEEEECSSTTCCEEEEEECSTTCEEEEETTTTEEEEECTT-SCEEE
T ss_pred             CCCcceeEEECCCCCEEEEecCCCeEEEECCCCCeEEecCCCCCCCCccceECCCCCEEEEccCCCeEEEECCC-CCEEE
Confidence            346789999999999888877788999998763111 0000 000001111 1111111  1  1257777766 44332


Q ss_pred             -ecccCCcceEEEEEeCCCCEEEeecCCCeEEEEECCCCeeeee-eecCCCCeeeEEEccCCCEEEEEeCCCeEEEEeCC
Q 042146           95 -TLIGHTNYVFCINFNPQSNRIVSDTFNETIRIWDIKTGKCLKV-LPAHSDPVTAIDFNRDGTMIVTSSYDGLYRILDAS  172 (262)
Q Consensus        95 -~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~-~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~d~~  172 (262)
                       .+......+..+++++++++.++...++.|..+|. +++.... ...+...+..+++.++++++++....+.|..||..
T Consensus       139 ~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~i~~~~~~  217 (300)
T 2qc5_A          139 YDLPNKGSYPAFITLGSDNALWFTENQNNSIGRITN-TGKLEEYPLPTNAAAPVGITSGNDGALWFVEIMGNKIGRITTT  217 (300)
T ss_dssp             EECSSTTCCEEEEEECTTSSEEEEETTTTEEEEECT-TCCEEEEECSSTTCCEEEEEECTTSSEEEEETTTTEEEEECTT
T ss_pred             ccCCCCCCCceeEEECCCCCEEEEecCCCeEEEECC-CCcEEEeeCCCCCCCcceEEECCCCCEEEEccCCCEEEEEcCC
Confidence             22334467899999999997777777889999998 5554332 22334568899999999877776667789888864


Q ss_pred             C--------------------CCccEEEEEcCCCeEEEEecCCCceeeEEeccCCceeEEEEEEecCCCeeEEccccceE
Q 042146          173 T--------------------PNGKFILVGTLDNTLRLWNYSTRKILKTYSGYTNSKYCISSTFSVTNGKYIVSHRDPVI  232 (262)
Q Consensus       173 ~--------------------~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~  232 (262)
                      .                    ++++..++...++.|..||. +++.. .+...                    .....+.
T Consensus       218 g~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~i~~~~~-~g~~~-~~~~~--------------------~~~~~~~  275 (300)
T 2qc5_A          218 GEISEYDIPTPNARPHAITAGKNSEIWFTEWGANQIGRITN-DNTIQ-EYQLQ--------------------TENAEPH  275 (300)
T ss_dssp             CCEEEEECSSTTCCEEEEEECSTTCEEEEETTTTEEEEECT-TSCEE-EEECC--------------------STTCCCC
T ss_pred             CcEEEEECCCCCCCceEEEECCCCCEEEeccCCCeEEEECC-CCcEE-EEECC--------------------ccCCccc
Confidence            2                    34554444445567777776 33322 22110                    0334578


Q ss_pred             EEEEcCCCCeEEEeeecCCCcEEEEeec
Q 042146          233 SVASHPAKNIIASGALDNDRTMKIWTQE  260 (262)
Q Consensus       233 ~~~~~p~~~~l~~~~~d~d~~i~iw~~~  260 (262)
                      +++++++|.++++.   .. .|..++++
T Consensus       276 ~i~~~~~g~l~v~~---~~-~i~~~~p~  299 (300)
T 2qc5_A          276 GITFGKDGSVWFAL---KC-KIGKLNLN  299 (300)
T ss_dssp             CEEECTTSCEEEEC---SS-EEEEEEEC
T ss_pred             eeEeCCCCCEEEEc---cC-ceEEeCCC
Confidence            89999998866554   33 56666654

>3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B

Probab=99.25  E-value=1.4e-08  Score=77.48  Aligned_cols=182  Identities=9%  Similarity=0.073  Sum_probs=114.4

Q ss_pred             cccCcCceEEEEEccC-CCeEEEecCCCeEEEeecCCCCCCCCCCCCCCccccCCccccccceeEEEEecCCCccceecc
Q 042146           19 LNGHLRAVSYVKFSHD-GRLLTSSSAEKTLLTYSLSSISNFDSTPPSPLQKFTGHEQGISDLATIRLWDVPTATSLKTLI   97 (262)
Q Consensus        19 ~~~h~~~v~~~~~~~~-~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~i~v~d~~~~~~~~~~~   97 (262)
                      +..+..-..+..|+|+ +.++++...++.|..||...                                   ++. ..+ 
T Consensus         8 ~~~~~~~~Egp~w~~~~~~l~~~d~~~~~i~~~d~~~-----------------------------------~~~-~~~-   50 (297)
T 3g4e_A            8 LPENCRCGESPVWEEVSNSLLFVDIPAKKVCRWDSFT-----------------------------------KQV-QRV-   50 (297)
T ss_dssp             ECCCCSBEEEEEEETTTTEEEEEETTTTEEEEEETTT-----------------------------------CCE-EEE-
T ss_pred             eccCCccccCCeEECCCCEEEEEECCCCEEEEEECCC-----------------------------------CcE-EEE-
Confidence            3344445668889995 45666666778888876542                                   221 111 


Q ss_pred             cCCcceEEEEEeCCCCEEEeecCCCeEEEEECCCCeeeeeeecC----CCCeeeEEEccCCCEEEEEeC-----------
Q 042146           98 GHTNYVFCINFNPQSNRIVSDTFNETIRIWDIKTGKCLKVLPAH----SDPVTAIDFNRDGTMIVTSSY-----------  162 (262)
Q Consensus        98 ~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~----~~~v~~~~~~~~~~~l~~~~~-----------  162 (262)
                      .....+.+++++|+++++++.  ++.|.+||.++++........    ...+.+++++|+|+++++...           
T Consensus        51 ~~~~~~~~i~~~~dG~l~v~~--~~~l~~~d~~~g~~~~~~~~~~~~~~~~~~di~~d~dG~l~~~~~~~~~~~~~~~~~  128 (297)
T 3g4e_A           51 TMDAPVSSVALRQSGGYVATI--GTKFCALNWKEQSAVVLATVDNDKKNNRFNDGKVDPAGRYFAGTMAEETAPAVLERH  128 (297)
T ss_dssp             ECSSCEEEEEEBTTSSEEEEE--TTEEEEEETTTTEEEEEEECCTTCSSEEEEEEEECTTSCEEEEEEECCSBTTBCCTT
T ss_pred             eCCCceEEEEECCCCCEEEEE--CCeEEEEECCCCcEEEEEecCCCCCCCCCCCEEECCCCCEEEecCCcccccccccCC
Confidence            123568899999999966554  568999999887654332221    234788999999996665432           


Q ss_pred             CCeEEEEeCCC------------------CCccEE-EEEcCCCeEEEEec--CCCceee--EEeccCCceeEEEEEEecC
Q 042146          163 DGLYRILDAST------------------PNGKFI-LVGTLDNTLRLWNY--STRKILK--TYSGYTNSKYCISSTFSVT  219 (262)
Q Consensus       163 dg~i~~~d~~~------------------~~~~~l-~~~~~dg~i~i~d~--~~~~~~~--~~~~~~~~~~~~~~~~~~~  219 (262)
                      .+.|..++...                  ++++.| ++.+.++.|.+|++  .++....  .+....             
T Consensus       129 ~~~l~~~d~~g~~~~~~~~~~~pngi~~spdg~~lyv~~~~~~~i~~~~~d~~~G~~~~~~~~~~~~-------------  195 (297)
T 3g4e_A          129 QGALYSLFPDHHVKKYFDQVDISNGLDWSLDHKIFYYIDSLSYSVDAFDYDLQTGQISNRRSVYKLE-------------  195 (297)
T ss_dssp             CEEEEEECTTSCEEEEEEEESBEEEEEECTTSCEEEEEEGGGTEEEEEEECTTTCCEEEEEEEEECC-------------
T ss_pred             CcEEEEEECCCCEEEEeeccccccceEEcCCCCEEEEecCCCCcEEEEeccCCCCcccCcEEEEECC-------------
Confidence            23455555332                  667655 45566788888886  4554321  111000             


Q ss_pred             CCeeEEccccceEEEEEcCCCCeEEEeeecCCCcEEEEeec
Q 042146          220 NGKYIVSHRDPVISVASHPAKNIIASGALDNDRTMKIWTQE  260 (262)
Q Consensus       220 ~~~~~~~~~~~v~~~~~~p~~~~l~~~~~d~d~~i~iw~~~  260 (262)
                            .+...+..++++++|.+.++..  .++.|..|+.+
T Consensus       196 ------~~~~~p~g~~~d~~G~lwva~~--~~~~v~~~d~~  228 (297)
T 3g4e_A          196 ------KEEQIPDGMCIDAEGKLWVACY--NGGRVIRLDPV  228 (297)
T ss_dssp             ------GGGCEEEEEEEBTTSCEEEEEE--TTTEEEEECTT
T ss_pred             ------CCCCCCCeeEECCCCCEEEEEc--CCCEEEEEcCC
Confidence                  0334577889999998777766  67788888875

>2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413}

Probab=99.24  E-value=2.8e-09  Score=83.11  Aligned_cols=177  Identities=11%  Similarity=0.074  Sum_probs=111.9

Q ss_pred             cCcCceEEEEEccCCCeEEEecC-----CCeEEEeecCCCCCCCCCCCCCCccccCCccccccceeEEEEecCCCcccee
Q 042146           21 GHLRAVSYVKFSHDGRLLTSSSA-----EKTLLTYSLSSISNFDSTPPSPLQKFTGHEQGISDLATIRLWDVPTATSLKT   95 (262)
Q Consensus        21 ~h~~~v~~~~~~~~~~~l~s~~~-----d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~i~v~d~~~~~~~~~   95 (262)
                      .|...+..++++++++++++-..     ++.|.+||+.+.+                        .++.+.+...     
T Consensus        64 ~~~~~p~gv~~d~~g~L~v~D~g~~~~~~~~i~~~d~~tg~------------------------~~~~~~~~~~-----  114 (343)
T 2qe8_A           64 ITFDTVLGIKSDGNGIVWMLDNGNQSKSVPKLVAWDTLNNQ------------------------LSRVIYLPPP-----  114 (343)
T ss_dssp             CCCSCEEEEEECSSSEEEEEECHHHHTSCCEEEEEETTTTE------------------------EEEEEECCTT-----
T ss_pred             cceeEeeEEEEcCCCcEEEEcCCCCcCCCCeEEEEECCCCe------------------------EEEEEECChh-----
Confidence            45677899999999886665433     4566666553211                        0222222110     


Q ss_pred             cccCCcceEEEEEeCCCCEE-Eeec---CCCeEEEEECCCCeeeeeeecCC-----------------------------
Q 042146           96 LIGHTNYVFCINFNPQSNRI-VSDT---FNETIRIWDIKTGKCLKVLPAHS-----------------------------  142 (262)
Q Consensus        96 ~~~~~~~v~~~~~~~~~~~l-~~~~---~dg~i~vwd~~~~~~~~~~~~~~-----------------------------  142 (262)
                      ...+...+..++++|++..+ ++..   .++.|.+||+.+++..+.+..|.                             
T Consensus       115 ~~~~~~~~~~v~vd~~~g~~yvtd~~~~~~~~i~v~d~~~g~~~r~~~~~~~~~~~~~~~~~~g~~~~~~~~~g~~~~~~  194 (343)
T 2qe8_A          115 ITLSNSFVNDLAVDLIHNFVYISDPAPDDKAALIRVDLQTGLAARVLQGYPGIAPEDIDLVIDGVPVQIGQPDGTVIRPH  194 (343)
T ss_dssp             TSCTTCCCCEEEEETTTTEEEEEECCSGGGCEEEEEETTTCCEEEECTTCTTTSCCSCCCEETTEECBEECTTSCEECCC
T ss_pred             hcccccccceEEEecCCCEEEEEcCccCCCCeEEEEECCCCCEEEEecCCCcccccccceeECCEEEEeccCCCceecee
Confidence            01123456789999865554 4544   57899999998877655443321                             


Q ss_pred             CCeeeEEEccCCCEEEEEeCCC-eEEEEeCC-----------------------C-------CCccEEEEEcCCCeEEEE
Q 042146          143 DPVTAIDFNRDGTMIVTSSYDG-LYRILDAS-----------------------T-------PNGKFILVGTLDNTLRLW  191 (262)
Q Consensus       143 ~~v~~~~~~~~~~~l~~~~~dg-~i~~~d~~-----------------------~-------~~~~~l~~~~~dg~i~i~  191 (262)
                      ..+..|+|+|+++.|+.+..++ .+..++..                       .       +++.++++...++.|.+|
T Consensus       195 ~~~~gia~s~dg~~ly~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~g~~g~pdgia~d~~G~l~va~~~~~~V~~~  274 (343)
T 2qe8_A          195 LGVNGIVLDAENEWLYLSPMHSTSMYRIKSADLSNLQLTDAELGSKIERYSEKPICDGISIDKDHNIYVGDLAHSAIGVI  274 (343)
T ss_dssp             CCEEEEEECTTSCEEEEEESSCSEEEEEEHHHHTCTTCCHHHHHTTCEEEEECCSCSCEEECTTCCEEEEEGGGTEEEEE
T ss_pred             cccceeEeccCCCEEEEEeCCCCeEEEEEHHHhcCCCCChhhhhcceEecccCCCCceEEECCCCCEEEEccCCCeEEEE
Confidence            2357899999999888887665 55555421                       0       567777777788889999


Q ss_pred             ecCCCceeeEEeccCCceeEEEEEEecCCCeeEEccccceEEEEEcCCCCeEEEee
Q 042146          192 NYSTRKILKTYSGYTNSKYCISSTFSVTNGKYIVSHRDPVISVASHPAKNIIASGA  247 (262)
Q Consensus       192 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~  247 (262)
                      |..+++....... .                    +...+.+++|.|++.++++.+
T Consensus       275 d~~~G~~~~~~~~-~--------------------~~~~p~~va~~~~g~l~v~~~  309 (343)
T 2qe8_A          275 TSADRAYKLLVTD-E--------------------KLSWTDSFNFGSDGYLYFDCN  309 (343)
T ss_dssp             ETTTTEEEEEEEC-G--------------------GGSCEEEEEECTTSCEEEEEC
T ss_pred             ECCCCCEEEEEEC-C--------------------ceecCCeeEECCCCcEEEEeC
Confidence            9855653322221 0                    234688999999998888876

>2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1

Probab=99.23  E-value=1.3e-08  Score=78.70  Aligned_cols=121  Identities=15%  Similarity=0.046  Sum_probs=76.4

Q ss_pred             cceEEEEEeCCCCEEEeecC------CCeEEEEECCCCeeeeeeecCCCCeeeEEEccCCCEEEEE-eCCCeEEEEeCC-
Q 042146          101 NYVFCINFNPQSNRIVSDTF------NETIRIWDIKTGKCLKVLPAHSDPVTAIDFNRDGTMIVTS-SYDGLYRILDAS-  172 (262)
Q Consensus       101 ~~v~~~~~~~~~~~l~~~~~------dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~~dg~i~~~d~~-  172 (262)
                      ..++.++++|+|+++++...      .+.|..++  +++... +..+......++|+|+++.++.+ +.++.|.+||+. 
T Consensus       134 ~~~~~i~~d~~G~l~v~~~~~~~~~~~~~l~~~~--~g~~~~-~~~~~~~~~~i~~s~dg~~lyv~~~~~~~I~~~d~~~  210 (326)
T 2ghs_A          134 NRSNDGRMHPSGALWIGTMGRKAETGAGSIYHVA--KGKVTK-LFADISIPNSICFSPDGTTGYFVDTKVNRLMRVPLDA  210 (326)
T ss_dssp             EEEEEEEECTTSCEEEEEEETTCCTTCEEEEEEE--TTEEEE-EEEEESSEEEEEECTTSCEEEEEETTTCEEEEEEBCT
T ss_pred             CCCCCEEECCCCCEEEEeCCCcCCCCceEEEEEe--CCcEEE-eeCCCcccCCeEEcCCCCEEEEEECCCCEEEEEEccc
Confidence            46889999999997765432      24566666  454332 32233456789999999876555 457889999864 


Q ss_pred             -C--------------------------CCccEEEEEcCCCeEEEEecCCCceeeEEeccCCceeEEEEEEecCCCeeEE
Q 042146          173 -T--------------------------PNGKFILVGTLDNTLRLWNYSTRKILKTYSGYTNSKYCISSTFSVTNGKYIV  225 (262)
Q Consensus       173 -~--------------------------~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  225 (262)
                       .                          +++.+.++...++.|.+||. +++.+..+..                     
T Consensus       211 ~~Gl~~~~~~~~~~~~~~~~~p~gi~~d~~G~lwva~~~~~~v~~~d~-~g~~~~~i~~---------------------  268 (326)
T 2ghs_A          211 RTGLPTGKAEVFIDSTGIKGGMDGSVCDAEGHIWNARWGEGAVDRYDT-DGNHIARYEV---------------------  268 (326)
T ss_dssp             TTCCBSSCCEEEEECTTSSSEEEEEEECTTSCEEEEEETTTEEEEECT-TCCEEEEEEC---------------------
T ss_pred             ccCCcccCceEEEECCCCCCCCCeeEECCCCCEEEEEeCCCEEEEECC-CCCEEEEEEC---------------------
Confidence             1                          22333333333455666665 4555444443                     


Q ss_pred             ccccceEEEEEc-CCCCeEEEee
Q 042146          226 SHRDPVISVASH-PAKNIIASGA  247 (262)
Q Consensus       226 ~~~~~v~~~~~~-p~~~~l~~~~  247 (262)
                       +...+.+++|+ |++..|+.++
T Consensus       269 -~~~~~~~~af~g~d~~~L~vt~  290 (326)
T 2ghs_A          269 -PGKQTTCPAFIGPDASRLLVTS  290 (326)
T ss_dssp             -SCSBEEEEEEESTTSCEEEEEE
T ss_pred             -CCCCcEEEEEecCCCCEEEEEe
Confidence             44568999998 8887665544

>1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum}

Probab=99.21  E-value=7.7e-10  Score=95.03  Aligned_cols=191  Identities=12%  Similarity=0.044  Sum_probs=110.1

Q ss_pred             EEEEEccCCCeEEEecCCCeEEEeecCCCCCCCCCCCCCCccccCCccccccceeEEEEecCCCcc----ceecccCCcc
Q 042146           27 SYVKFSHDGRLLTSSSAEKTLLTYSLSSISNFDSTPPSPLQKFTGHEQGISDLATIRLWDVPTATS----LKTLIGHTNY  102 (262)
Q Consensus        27 ~~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~i~v~d~~~~~~----~~~~~~~~~~  102 (262)
                      ..++|+|| +.|+.++.++...     ..    .        ..    .......|++|++.++..    +.....+...
T Consensus       212 ~~~~wspD-~~l~~~~~~~~~~-----~~----~--------~~----~~~~~~~v~~~~lgt~~~~~~lv~~~~~~~~~  269 (741)
T 1yr2_A          212 SGLAWLGN-DALLYSRFAEPKE-----GQ----A--------FQ----ALNYNQTVWLHRLGTPQSADQPVFATPELPKR  269 (741)
T ss_dssp             CCCEESTT-SEEEEEECCCC-----------------------------CCCCCEEEEEETTSCGGGCEEEECCTTCTTC
T ss_pred             ccEEEECC-CEEEEEEecCccc-----cc----c--------cc----cCCCCCEEEEEECCCCchhCEEEeccCCCCeE
Confidence            57889999 9888887765310     00    0        00    000012467777766542    2222233345


Q ss_pred             eEEEEEeCCCCEEEeecCC-----CeEEEEECCCC--eeeeeeecCCCCeeeEEEccCCCEEEEEeCC----CeEEEEeC
Q 042146          103 VFCINFNPQSNRIVSDTFN-----ETIRIWDIKTG--KCLKVLPAHSDPVTAIDFNRDGTMIVTSSYD----GLYRILDA  171 (262)
Q Consensus       103 v~~~~~~~~~~~l~~~~~d-----g~i~vwd~~~~--~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d----g~i~~~d~  171 (262)
                      +..+.|+|||++|+..+.+     ..|.+||+.++  +....+..+...+.... +|+++.|+..+.+    +.|.+||+
T Consensus       270 ~~~~~~SpDG~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~~~~-~~dg~~l~~~s~~~~~~~~l~~~d~  348 (741)
T 1yr2_A          270 GHGASVSSDGRWVVITSSEGTDPVNTVHVARVTNGKIGPVTALIPDLKAQWDFV-DGVGDQLWFVSGDGAPLKKIVRVDL  348 (741)
T ss_dssp             EEEEEECTTSCEEEEEEECTTCSCCEEEEEEEETTEECCCEEEECSSSSCEEEE-EEETTEEEEEECTTCTTCEEEEEEC
T ss_pred             EEEEEECCCCCEEEEEEEccCCCcceEEEEECCCCCCcccEEecCCCCceEEEE-eccCCEEEEEECCCCCCCEEEEEeC
Confidence            8899999999988876644     38999999876  31445555555555553 4889888877753    45999987


Q ss_pred             CCC---------------------CccEEEEEcCCCeEEEEecC-CCceeeEEeccCCceeEEEEEEecCCCeeEEcccc
Q 042146          172 STP---------------------NGKFILVGTLDNTLRLWNYS-TRKILKTYSGYTNSKYCISSTFSVTNGKYIVSHRD  229 (262)
Q Consensus       172 ~~~---------------------~~~~l~~~~~dg~i~i~d~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  229 (262)
                      ..+                     ++.++++...++..+||.+. +++....+..                     ....
T Consensus       349 ~~~~~~~~~l~~~~~~~l~~~~~~~~~lv~~~~~dg~~~l~~~~~~g~~~~~l~~---------------------~~~~  407 (741)
T 1yr2_A          349 SGSTPRFDTVVPESKDNLESVGIAGNRLFASYIHDAKSQVLAFDLDGKPAGAVSL---------------------PGIG  407 (741)
T ss_dssp             SSSSCEEEEEECCCSSEEEEEEEEBTEEEEEEEETTEEEEEEEETTSCEEEECBC---------------------SSSC
T ss_pred             CCCccccEEEecCCCCeEEEEEEECCEEEEEEEECCEEEEEEEeCCCCceeeccC---------------------CCCe
Confidence            642                     12233333344433333222 1222222221                     0345


Q ss_pred             ceEEEEEcCCCCeEEEe--eecCCCcEEEEeecc
Q 042146          230 PVISVASHPAKNIIASG--ALDNDRTMKIWTQEK  261 (262)
Q Consensus       230 ~v~~~~~~p~~~~l~~~--~~d~d~~i~iw~~~~  261 (262)
                      .+..++++|+++.|+..  +....+.|++||+..
T Consensus       408 ~v~~~~~s~d~~~l~~~~ss~~~P~~i~~~d~~t  441 (741)
T 1yr2_A          408 SASGLSGRPGDRHAYLSFSSFTQPATVLALDPAT  441 (741)
T ss_dssp             EEEEEECCBTCSCEEEEEEETTEEEEEEEEETTT
T ss_pred             EEEEeecCCCCCEEEEEEcCCCCCCEEEEEECCC
Confidence            68889999998866533  211357899998753

>2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A*

Probab=99.20  E-value=4.5e-08  Score=72.73  Aligned_cols=200  Identities=11%  Similarity=0.005  Sum_probs=122.3

Q ss_pred             ccccceecccCcC--ceEEEEEccCCCeEEEecC--CCeEEEeecCCCCCCCCCCCCCCccccCCccccccceeEEEEec
Q 042146           12 PYTLTQTLNGHLR--AVSYVKFSHDGRLLTSSSA--EKTLLTYSLSSISNFDSTPPSPLQKFTGHEQGISDLATIRLWDV   87 (262)
Q Consensus        12 ~~~~~~~~~~h~~--~v~~~~~~~~~~~l~s~~~--d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~i~v~d~   87 (262)
                      +++.+.++. |..  ....++|+|++.++++.+.  ++.|.+.                                   |.
T Consensus         8 ~~~vv~~~p-~~~~~f~~Gl~~~~dg~Lyvstg~~~~s~v~~i-----------------------------------D~   51 (266)
T 2iwa_A            8 IVEVLNEFP-HDPYAFTQGLVYAENDTLFESTGLYGRSSVRQV-----------------------------------AL   51 (266)
T ss_dssp             EEEEEEEEE-CCTTCCEEEEEECSTTEEEEEECSTTTCEEEEE-----------------------------------ET
T ss_pred             CceEEEEEE-CCCCCCcccEEEeCCCeEEEECCCCCCCEEEEE-----------------------------------EC
Confidence            345666664 443  3679999998765555543  4555555                                   55


Q ss_pred             CCCccceecccCC-cceEEEEEeCCCCEEEeecCCCeEEEEECCCCeeeeeeecCCCCeeeEEEccCCCEEEEEeCCCeE
Q 042146           88 PTATSLKTLIGHT-NYVFCINFNPQSNRIVSDTFNETIRIWDIKTGKCLKVLPAHSDPVTAIDFNRDGTMIVTSSYDGLY  166 (262)
Q Consensus        88 ~~~~~~~~~~~~~-~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i  166 (262)
                      .+++.+..+.-.. .....+++. .+.+.++.-.++.+.++|..+.+.+.++.....  ....++++++.++++..++.|
T Consensus        52 ~tg~v~~~i~l~~~~fgeGi~~~-g~~lyv~t~~~~~v~viD~~t~~v~~~i~~g~~--~g~glt~Dg~~l~vs~gs~~l  128 (266)
T 2iwa_A           52 QTGKVENIHKMDDSYFGEGLTLL-NEKLYQVVWLKNIGFIYDRRTLSNIKNFTHQMK--DGWGLATDGKILYGSDGTSIL  128 (266)
T ss_dssp             TTCCEEEEEECCTTCCEEEEEEE-TTEEEEEETTCSEEEEEETTTTEEEEEEECCSS--SCCEEEECSSSEEEECSSSEE
T ss_pred             CCCCEEEEEecCCCcceEEEEEe-CCEEEEEEecCCEEEEEECCCCcEEEEEECCCC--CeEEEEECCCEEEEECCCCeE
Confidence            5666655543111 122345555 223444555688999999999999888864311  234466788878777788999


Q ss_pred             EEEeCCC------------------------CCccEEEEEcCCCeEEEEecCCCceeeEEeccCCceeEEEEEEecCCCe
Q 042146          167 RILDAST------------------------PNGKFILVGTLDNTLRLWNYSTRKILKTYSGYTNSKYCISSTFSVTNGK  222 (262)
Q Consensus       167 ~~~d~~~------------------------~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  222 (262)
                      .++|..+                        .++...+..-.++.|.+.|..+++.+..+..........      ... 
T Consensus       129 ~viD~~t~~v~~~I~Vg~~~~p~~~~nele~~dg~lyvn~~~~~~V~vID~~tg~V~~~I~~~g~~~~~~------~~~-  201 (266)
T 2iwa_A          129 YEIDPHTFKLIKKHNVKYNGHRVIRLNELEYINGEVWANIWQTDCIARISAKDGTLLGWILLPNLRKKLI------DEG-  201 (266)
T ss_dssp             EEECTTTCCEEEEEECEETTEECCCEEEEEEETTEEEEEETTSSEEEEEETTTCCEEEEEECHHHHHHHH------HTT-
T ss_pred             EEEECCCCcEEEEEEECCCCcccccceeEEEECCEEEEecCCCCeEEEEECCCCcEEEEEECCCcccccc------ccc-
Confidence            9999876                        134333333356789999999999988886421000000      000 


Q ss_pred             eEEccccceEEEEEcCCCCeEEEeeecCCCcEEEEeec
Q 042146          223 YIVSHRDPVISVASHPAKNIIASGALDNDRTMKIWTQE  260 (262)
Q Consensus       223 ~~~~~~~~v~~~~~~p~~~~l~~~~~d~d~~i~iw~~~  260 (262)
                        .......+.++|+|+++.|+.++. ..+.+.+-++.
T Consensus       202 --~~~~~v~nGIa~~~~~~~lfVTgk-~~~~v~~i~l~  236 (266)
T 2iwa_A          202 --FRDIDVLNGIAWDQENKRIFVTGK-LWPKLFEIKLH  236 (266)
T ss_dssp             --CTTCCCEEEEEEETTTTEEEEEET-TCSEEEEEEEE
T ss_pred             --ccccCceEEEEEcCCCCEEEEECC-CCCeEEEEEEe
Confidence              001135689999999875555442 56778777664

>2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens}

Probab=99.17  E-value=2.1e-11  Score=96.09  Aligned_cols=159  Identities=14%  Similarity=0.093  Sum_probs=84.2

Q ss_pred             CCCceeeec--ccccceecccCcCceEEEEEccCCCeEEEecCCCeEEEeecCCCCCCCCCCCCCCccccCCccccccce
Q 042146            3 SDRSLESFR--PYTLTQTLNGHLRAVSYVKFSHDGRLLTSSSAEKTLLTYSLSSISNFDSTPPSPLQKFTGHEQGISDLA   80 (262)
Q Consensus         3 ~d~~i~~~~--~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~   80 (262)
                      .|+.+..|+  +.+.+-+++.  +++.+..+.+++..+++++.||.|+.||.++                          
T Consensus        17 ~dg~v~a~d~~tG~~~W~~~~--~~~~s~p~~~~g~~~v~~s~dg~l~a~d~~t--------------------------   68 (369)
T 2hz6_A           17 LDGSLHAVSKRTGSIKWTLKE--DPVLQVPTHVEEPAFLPDPNDGSLYTLGSKN--------------------------   68 (369)
T ss_dssp             TTSEEEEEETTTCCEEEEEEC--CCSCCCC-----CCEEECTTTCCEEEC------------------------------
T ss_pred             CCCEEEEEECCCCCEEEEecC--CCceecceEcCCCEEEEeCCCCEEEEEECCC--------------------------
Confidence            467777775  4455555544  4555555666777788888889888886643                          


Q ss_pred             eEEEEecCCCccceecccCCc-ceE-EEEEeCCCCEEEeecCCCeEEEEECCCCeeeeeeecCCCCeeeEEEccCCCEEE
Q 042146           81 TIRLWDVPTATSLKTLIGHTN-YVF-CINFNPQSNRIVSDTFNETIRIWDIKTGKCLKVLPAHSDPVTAIDFNRDGTMIV  158 (262)
Q Consensus        81 ~i~v~d~~~~~~~~~~~~~~~-~v~-~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~  158 (262)
                               ++.+..+..+.. .+. +..+ ..+..+++++.++.|+.||.++++.+..+..+.    ...++|++..++
T Consensus        69 ---------G~~~w~~~~~~~~~~~~sp~~-~~~~~v~~g~~dg~v~a~D~~tG~~~w~~~~~~----~~~~~p~~~~v~  134 (369)
T 2hz6_A           69 ---------NEGLTKLPFTIPELVQASPCR-SSDGILYMGKKQDIWYVIDLLTGEKQQTLSSAF----ADSLSPSTSLLY  134 (369)
T ss_dssp             ----------CCSEECSCCHHHHHTTCSCC------CCCCEEEEEEEEECCC--------------------------EE
T ss_pred             ---------CceeeeeeccCccccccCceE-ecCCEEEEEeCCCEEEEEECCCCcEEEEecCCC----cccccccCCEEE
Confidence                     222222211100 000 0001 134567788889999999999999888876543    245567888899


Q ss_pred             EEeCCCeEEEEeCCC----------------CCc-----cEEEEEcCCCeEEEEecCCCceeeEEe
Q 042146          159 TSSYDGLYRILDAST----------------PNG-----KFILVGTLDNTLRLWNYSTRKILKTYS  203 (262)
Q Consensus       159 ~~~~dg~i~~~d~~~----------------~~~-----~~l~~~~~dg~i~i~d~~~~~~~~~~~  203 (262)
                      +++.|+.|+.||.++                .++     ..+++++.+|.|+.||.++|+.+..+.
T Consensus       135 ~~~~dg~v~a~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~v~~~~~dg~v~a~d~~tG~~~W~~~  200 (369)
T 2hz6_A          135 LGRTEYTITMYDTKTRELRWNATYFDYAASLPEDDVDYKMSHFVSNGDGLVVTVDSESGDVLWIQN  200 (369)
T ss_dssp             EEEEEEEEECCCSSSSSCCCEEEEEEECCBCCCCCTTCCCCEEEEETSCEEEEECTTTCCEEEEEE
T ss_pred             EEecCCEEEEEECCCCCEEEeEecccccCccccCCccccceEEEECCCCEEEEEECCCCcEEEEec
Confidence            999999999999876                122     567788899999999999999888776

>3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ...

Probab=99.17  E-value=4.8e-09  Score=82.13  Aligned_cols=116  Identities=10%  Similarity=0.025  Sum_probs=88.8

Q ss_pred             EEEEecCCCccceecccCCcceEEEEEeCCCCEEEeec----------CCCeEEEEECCCCeeeeeeecCC-------CC
Q 042146           82 IRLWDVPTATSLKTLIGHTNYVFCINFNPQSNRIVSDT----------FNETIRIWDIKTGKCLKVLPAHS-------DP  144 (262)
Q Consensus        82 i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~----------~dg~i~vwd~~~~~~~~~~~~~~-------~~  144 (262)
                      |.++|..+++.+.++.....+ . ++++|++++++++.          .++.|.+||..+.+.+..+....       ..
T Consensus        61 V~ViD~~t~~v~~~I~vG~~P-~-va~spDG~~lyVan~~~~r~~~G~~~~~VsviD~~t~~v~~~I~v~~g~r~~~g~~  138 (386)
T 3sjl_D           61 QFVIDGEAGRVIGMIDGGFLP-N-PVVADDGSFIAHASTVFSRIARGERTDYVEVFDPVTLLPTADIELPDAPRFLVGTY  138 (386)
T ss_dssp             EEEEETTTTEEEEEEEECSSC-E-EEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTCCEEEEEEETTCCCCCBSCC
T ss_pred             EEEEECCCCeEEEEEECCCCC-c-EEECCCCCEEEEEcccccccccCCCCCEEEEEECCCCeEEEEEECCCccccccCCC
Confidence            556677777777777654555 4 99999999988775          35789999999999888775322       24


Q ss_pred             eeeEEEccCCCEEEEEeC--CCeEEEEeCCC---------C--------CccEEEEEcCCCeEEEEecCC-Ccee
Q 042146          145 VTAIDFNRDGTMIVTSSY--DGLYRILDAST---------P--------NGKFILVGTLDNTLRLWNYST-RKIL  199 (262)
Q Consensus       145 v~~~~~~~~~~~l~~~~~--dg~i~~~d~~~---------~--------~~~~l~~~~~dg~i~i~d~~~-~~~~  199 (262)
                      ...++++|||++++++..  ++.|.++|+.+         +        ..+.+++.+.||.+.+.++.+ ++..
T Consensus       139 P~~~a~spDGk~lyVan~~~~~~VsVID~~t~~vv~tI~v~g~~~~~P~g~~~~~~~~~DG~~~~v~~~~~g~v~  213 (386)
T 3sjl_D          139 PWMTSLTPDGKTLLFYQFSPAPAVGVVDLEGKAFKRMLDVPDCYHIFPTAPDTFFMHCRDGSLAKVAFGTEGTPE  213 (386)
T ss_dssp             GGGEEECTTSSEEEEEECSSSCEEEEEETTTTEEEEEEECCSEEEEEEEETTEEEEEETTSCEEEEECCSSSCCE
T ss_pred             CceEEEcCCCCEEEEEEcCCCCeEEEEECCCCcEEEEEECCCcceeecCCCceeEEECCCCCEEEEECCCCCeEE
Confidence            578999999999888864  68999999987         1        234566778899999999876 5553

>1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1

Probab=99.14  E-value=1.5e-09  Score=84.85  Aligned_cols=47  Identities=9%  Similarity=-0.087  Sum_probs=33.0

Q ss_pred             ceeeec--ccccceecccCcCceEEEEEccCCCeEEEec----------CCCeEEEeecCC
Q 042146            6 SLESFR--PYTLTQTLNGHLRAVSYVKFSHDGRLLTSSS----------AEKTLLTYSLSS   54 (262)
Q Consensus         6 ~i~~~~--~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~----------~d~~i~iw~~~~   54 (262)
                      ++..++  .++.+.++..-..+  .+.++||+++++++.          .++.|.+||..+
T Consensus        47 ~vsvID~~t~~v~~~i~vG~~P--~i~~spDg~~lyVan~~~~r~~~G~~~~~VsviD~~T  105 (368)
T 1mda_H           47 ENWVSCAGCGVTLGHSLGAFLS--LAVAGHSGSDFALASTSFARSAKGKRTDYVEVFDPVT  105 (368)
T ss_dssp             EEEEEETTTTEEEEEEEECTTC--EEEECTTSSCEEEEEEEETTTTSSSEEEEEEEECTTT
T ss_pred             eEEEEECCCCeEEEEEeCCCCC--ceEECCCCCEEEEEcccccccccCCCCCEEEEEECCC
Confidence            444554  56777777755566  799999999888885          356677775543

>2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1

Probab=99.14  E-value=7.4e-08  Score=74.50  Aligned_cols=175  Identities=11%  Similarity=0.037  Sum_probs=105.5

Q ss_pred             ceEEEEEccCC-CeEEEecCCCeEEEeecCCCCCCCCCCCCCCccccCCccccccceeEEEEecCCCccceecccCCcce
Q 042146           25 AVSYVKFSHDG-RLLTSSSAEKTLLTYSLSSISNFDSTPPSPLQKFTGHEQGISDLATIRLWDVPTATSLKTLIGHTNYV  103 (262)
Q Consensus        25 ~v~~~~~~~~~-~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~i~v~d~~~~~~~~~~~~~~~~v  103 (262)
                      -..+..|+|++ .++++...++.|..||.++                                   ++. ..+. ....+
T Consensus        50 ~~egp~~~~~~~~l~~~d~~~~~i~~~d~~~-----------------------------------~~~-~~~~-~~~~v   92 (326)
T 2ghs_A           50 LGEGPTFDPASGTAWWFNILERELHELHLAS-----------------------------------GRK-TVHA-LPFMG   92 (326)
T ss_dssp             BEEEEEEETTTTEEEEEEGGGTEEEEEETTT-----------------------------------TEE-EEEE-CSSCE
T ss_pred             CCcCCeEeCCCCEEEEEECCCCEEEEEECCC-----------------------------------CcE-EEEE-CCCcc
Confidence            35678899874 4556666677777775532                                   221 1111 23468


Q ss_pred             EEEEEeCCCCEEEeecCCCeEEEEECCCCeeeeeeec----CCCCeeeEEEccCCCEEEEEeC------CCeEEEEeCCC
Q 042146          104 FCINFNPQSNRIVSDTFNETIRIWDIKTGKCLKVLPA----HSDPVTAIDFNRDGTMIVTSSY------DGLYRILDAST  173 (262)
Q Consensus       104 ~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~----~~~~v~~~~~~~~~~~l~~~~~------dg~i~~~d~~~  173 (262)
                      .+++++|+++++++. .+ .|.+||..+++.......    ....+.+++++|+|+++++...      .+.|..++ ..
T Consensus        93 ~~i~~~~dg~l~v~~-~~-gl~~~d~~~g~~~~~~~~~~~~~~~~~~~i~~d~~G~l~v~~~~~~~~~~~~~l~~~~-~g  169 (326)
T 2ghs_A           93 SALAKISDSKQLIAS-DD-GLFLRDTATGVLTLHAELESDLPGNRSNDGRMHPSGALWIGTMGRKAETGAGSIYHVA-KG  169 (326)
T ss_dssp             EEEEEEETTEEEEEE-TT-EEEEEETTTCCEEEEECSSTTCTTEEEEEEEECTTSCEEEEEEETTCCTTCEEEEEEE-TT
T ss_pred             eEEEEeCCCeEEEEE-CC-CEEEEECCCCcEEEEeeCCCCCCCCCCCCEEECCCCCEEEEeCCCcCCCCceEEEEEe-CC
Confidence            899999999877765 33 499999988765432221    1235889999999987665542      24555555 21


Q ss_pred             ------------------CCccEEE-EEcCCCeEEEEecC--CC-cee--eEEeccCCceeEEEEEEecCCCeeEEcccc
Q 042146          174 ------------------PNGKFIL-VGTLDNTLRLWNYS--TR-KIL--KTYSGYTNSKYCISSTFSVTNGKYIVSHRD  229 (262)
Q Consensus       174 ------------------~~~~~l~-~~~~dg~i~i~d~~--~~-~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  229 (262)
                                        ++++.++ +.+.++.|.+||+.  ++ +..  ..+.....                   ...
T Consensus       170 ~~~~~~~~~~~~~~i~~s~dg~~lyv~~~~~~~I~~~d~~~~~Gl~~~~~~~~~~~~~-------------------~~~  230 (326)
T 2ghs_A          170 KVTKLFADISIPNSICFSPDGTTGYFVDTKVNRLMRVPLDARTGLPTGKAEVFIDSTG-------------------IKG  230 (326)
T ss_dssp             EEEEEEEEESSEEEEEECTTSCEEEEEETTTCEEEEEEBCTTTCCBSSCCEEEEECTT-------------------SSS
T ss_pred             cEEEeeCCCcccCCeEEcCCCCEEEEEECCCCEEEEEEcccccCCcccCceEEEECCC-------------------CCC
Confidence                              5666554 44556788888875  44 321  11111000                   223


Q ss_pred             ceEEEEEcCCCCeEEEeeecCCCcEEEEeec
Q 042146          230 PVISVASHPAKNIIASGALDNDRTMKIWTQE  260 (262)
Q Consensus       230 ~v~~~~~~p~~~~l~~~~~d~d~~i~iw~~~  260 (262)
                      .+..++++++|.++++..  .++.|..|+.+
T Consensus       231 ~p~gi~~d~~G~lwva~~--~~~~v~~~d~~  259 (326)
T 2ghs_A          231 GMDGSVCDAEGHIWNARW--GEGAVDRYDTD  259 (326)
T ss_dssp             EEEEEEECTTSCEEEEEE--TTTEEEEECTT
T ss_pred             CCCeeEECCCCCEEEEEe--CCCEEEEECCC
Confidence            456778888887666665  45677777753

>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A

Probab=99.10  E-value=5.1e-08  Score=71.70  Aligned_cols=185  Identities=13%  Similarity=0.139  Sum_probs=114.9

Q ss_pred             ccccceecccCcCc--eEEEEEccCCCeEEEecCCC--eEEEeecCCCCCCCCCCCCCCccccCCccccccceeEEEEec
Q 042146           12 PYTLTQTLNGHLRA--VSYVKFSHDGRLLTSSSAEK--TLLTYSLSSISNFDSTPPSPLQKFTGHEQGISDLATIRLWDV   87 (262)
Q Consensus        12 ~~~~~~~~~~h~~~--v~~~~~~~~~~~l~s~~~d~--~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~i~v~d~   87 (262)
                      .++.++++. |...  ...+.|+ ++.++.+.+.+|  .|+.+                                   |+
T Consensus        30 ~~~vv~~~p-hd~~~ftqGL~~~-~~~LyestG~~g~S~v~~v-----------------------------------D~   72 (262)
T 3nol_A           30 DYQIVHSYP-HDTKAFTEGFFYR-NGYFYESTGLNGRSSIRKV-----------------------------------DI   72 (262)
T ss_dssp             EEEEEEEEE-CCTTCEEEEEEEE-TTEEEEEEEETTEEEEEEE-----------------------------------CT
T ss_pred             ceEEEEEec-CCCCcccceEEEE-CCEEEEECCCCCCceEEEE-----------------------------------EC
Confidence            345666663 5433  4788888 677677777665  55555                                   55


Q ss_pred             CCCccceecccCCcceEEEEEeCCCCEEE-eecCCCeEEEEECCCCeeeeeeecCCCCeeeEEEccCCCEEEEEeCCCeE
Q 042146           88 PTATSLKTLIGHTNYVFCINFNPQSNRIV-SDTFNETIRIWDIKTGKCLKVLPAHSDPVTAIDFNRDGTMIVTSSYDGLY  166 (262)
Q Consensus        88 ~~~~~~~~~~~~~~~v~~~~~~~~~~~l~-~~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i  166 (262)
                      .+++.+..+.-.. ......+.++++.|+ ..-.++.+.+||..+.+.+.++..... -..+  ++++..|+.+..++.|
T Consensus        73 ~Tgkv~~~~~l~~-~~FgeGit~~g~~ly~ltw~~~~v~v~D~~t~~~~~ti~~~~e-G~gl--t~dg~~L~~SdGs~~i  148 (262)
T 3nol_A           73 ESGKTLQQIELGK-RYFGEGISDWKDKIVGLTWKNGLGFVWNIRNLRQVRSFNYDGE-GWGL--THNDQYLIMSDGTPVL  148 (262)
T ss_dssp             TTCCEEEEEECCT-TCCEEEEEEETTEEEEEESSSSEEEEEETTTCCEEEEEECSSC-CCCE--EECSSCEEECCSSSEE
T ss_pred             CCCcEEEEEecCC-ccceeEEEEeCCEEEEEEeeCCEEEEEECccCcEEEEEECCCC-ceEE--ecCCCEEEEECCCCeE
Confidence            5666665554222 222222223344444 445688999999999999998875332 2344  4677878877778899


Q ss_pred             EEEeCCC------------------------CCccEEEEEcCCCeEEEEecCCCceeeEEeccCCceeEEEEEEecCCCe
Q 042146          167 RILDAST------------------------PNGKFILVGTLDNTLRLWNYSTRKILKTYSGYTNSKYCISSTFSVTNGK  222 (262)
Q Consensus       167 ~~~d~~~------------------------~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  222 (262)
                      .++|..+                        .++...+..-.+..|.+.|.++++.+..+....-....         ..
T Consensus       149 ~~iDp~T~~v~~~I~V~~~g~~~~~lNELe~~~G~lyan~w~~~~I~vIDp~tG~V~~~Id~~~L~~~~---------~~  219 (262)
T 3nol_A          149 RFLDPESLTPVRTITVTAHGEELPELNELEWVDGEIFANVWQTNKIVRIDPETGKVTGIIDLNGILAEA---------GP  219 (262)
T ss_dssp             EEECTTTCSEEEEEECEETTEECCCEEEEEEETTEEEEEETTSSEEEEECTTTCBEEEEEECTTGGGGS---------CS
T ss_pred             EEEcCCCCeEEEEEEeccCCccccccceeEEECCEEEEEEccCCeEEEEECCCCcEEEEEECCcCcccc---------cc
Confidence            9999876                        22333333335678889999999998888753210000         00


Q ss_pred             eEEccccceEEEEEcCCCCeEEEee
Q 042146          223 YIVSHRDPVISVASHPAKNIIASGA  247 (262)
Q Consensus       223 ~~~~~~~~v~~~~~~p~~~~l~~~~  247 (262)
                       ......-.+.|+|+|+++.|+..+
T Consensus       220 -~~~~~~vlNGIA~dp~~~~lfVTG  243 (262)
T 3nol_A          220 -LPSPIDVLNGIAWDKEHHRLFVTG  243 (262)
T ss_dssp             -CCSSCCCEEEEEEETTTTEEEEEE
T ss_pred             -ccCcCCceEEEEEcCCCCEEEEEC
Confidence             000224568999999988877776

>3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus}

Probab=99.05  E-value=2.7e-07  Score=67.91  Aligned_cols=182  Identities=10%  Similarity=0.033  Sum_probs=115.7

Q ss_pred             ccceecccCcCc--eEEEEEccCCCeEEEecCCCeEEEeecCCCCCCCCCCCCCCccccCCccccccceeEEEEecCCCc
Q 042146           14 TLTQTLNGHLRA--VSYVKFSHDGRLLTSSSAEKTLLTYSLSSISNFDSTPPSPLQKFTGHEQGISDLATIRLWDVPTAT   91 (262)
Q Consensus        14 ~~~~~~~~h~~~--v~~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~i~v~d~~~~~   91 (262)
                      +.++++. |...  ...+.|+ ++.++.+.+.+|.|+++|+                                   ++++
T Consensus        44 ~Vv~~~p-hd~~~ftqGL~~~-~~~Ly~stG~~g~v~~iD~-----------------------------------~Tgk   86 (268)
T 3nok_A           44 HIIREYP-HATNAFTQGLVFH-QGHFFESTGHQGTLRQLSL-----------------------------------ESAQ   86 (268)
T ss_dssp             EEEEEEE-CCTTCCEEEEEEE-TTEEEEEETTTTEEEECCS-----------------------------------SCSS
T ss_pred             EEEEEEc-CCCccccceEEEE-CCEEEEEcCCCCEEEEEEC-----------------------------------CCCc
Confidence            4556663 4333  4678887 4677788888888877755                                   4455


Q ss_pred             cceecccCCcce--EEEEEeCCCCEEEeecCCCeEEEEECCCCeeeeeeecCCCCeeeEEEccCCCEEEEEeCCCeEEEE
Q 042146           92 SLKTLIGHTNYV--FCINFNPQSNRIVSDTFNETIRIWDIKTGKCLKVLPAHSDPVTAIDFNRDGTMIVTSSYDGLYRIL  169 (262)
Q Consensus        92 ~~~~~~~~~~~v--~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~  169 (262)
                      .+..+ - ....  ..+++.. +++......++.+.+||.++.+.+.++.... .-..++  ++++.|+.+..++.|.++
T Consensus        87 v~~~~-l-~~~~FgeGit~~g-~~Ly~ltw~~~~v~V~D~~Tl~~~~ti~~~~-eGwGLt--~Dg~~L~vSdGs~~l~~i  160 (268)
T 3nok_A           87 PVWME-R-LGNIFAEGLASDG-ERLYQLTWTEGLLFTWSGMPPQRERTTRYSG-EGWGLC--YWNGKLVRSDGGTMLTFH  160 (268)
T ss_dssp             CSEEE-E-CTTCCEEEEEECS-SCEEEEESSSCEEEEEETTTTEEEEEEECSS-CCCCEE--EETTEEEEECSSSEEEEE
T ss_pred             EEeEE-C-CCCcceeEEEEeC-CEEEEEEccCCEEEEEECCcCcEEEEEeCCC-ceeEEe--cCCCEEEEECCCCEEEEE
Confidence            44444 1 1122  2344432 3444455578899999999999999987533 224454  568888888889999999


Q ss_pred             eCCC------------------------CCccEEEEEcCCCeEEEEecCCCceeeEEeccCCceeEEEEEEecCCCeeEE
Q 042146          170 DAST------------------------PNGKFILVGTLDNTLRLWNYSTRKILKTYSGYTNSKYCISSTFSVTNGKYIV  225 (262)
Q Consensus       170 d~~~------------------------~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  225 (262)
                      |..+                        .++...+..-.+..|.+.|.++++.+..+....-....       ...  ..
T Consensus       161 Dp~T~~v~~~I~V~~~g~~v~~lNeLe~~dG~lyanvw~s~~I~vIDp~TG~V~~~Idl~~L~~~~-------~~~--~~  231 (268)
T 3nok_A          161 EPDGFALVGAVQVKLRGQPVELINELECANGVIYANIWHSSDVLEIDPATGTVVGVIDASALTRAV-------AGQ--VT  231 (268)
T ss_dssp             CTTTCCEEEEEECEETTEECCCEEEEEEETTEEEEEETTCSEEEEECTTTCBEEEEEECHHHHHHH-------TTT--CC
T ss_pred             cCCCCeEEEEEEeCCCCcccccccccEEeCCEEEEEECCCCeEEEEeCCCCcEEEEEECCCCcccc-------ccc--cc
Confidence            9876                        24554444446778999999999999888742100000       000  00


Q ss_pred             ccccceEEEEEcCCCCeEEEee
Q 042146          226 SHRDPVISVASHPAKNIIASGA  247 (262)
Q Consensus       226 ~~~~~v~~~~~~p~~~~l~~~~  247 (262)
                      ....-.+.|+++|+++.|+..+
T Consensus       232 ~~~~vlNGIA~dp~~~rlfVTG  253 (268)
T 3nok_A          232 NPEAVLNGIAVEPGSGRIFMTG  253 (268)
T ss_dssp             CTTCCEEEEEECTTTCCEEEEE
T ss_pred             CcCCceEEEEEcCCCCEEEEeC
Confidence            0224578999999877666665

>3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis}

Probab=99.02  E-value=6.1e-08  Score=74.77  Aligned_cols=195  Identities=12%  Similarity=0.064  Sum_probs=121.4

Q ss_pred             CCCeEEEecCCCeEEEeecCCCCCCCCCCCC-CCc-cccCCcccc--cc-ceeEEEEecCCCccceecccCCcceEEEEE
Q 042146           34 DGRLLTSSSAEKTLLTYSLSSISNFDSTPPS-PLQ-KFTGHEQGI--SD-LATIRLWDVPTATSLKTLIGHTNYVFCINF  108 (262)
Q Consensus        34 ~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~-~~~-~~~~~~~~v--~~-~~~i~v~d~~~~~~~~~~~~~~~~v~~~~~  108 (262)
                      ++.. ..++.++.|..+|............. ... ........+  .. ...|..+|.. ++....+......+.++..
T Consensus       107 ~~~l-~v~t~~~~l~~~d~~g~~~~~~~~~~~~~~~~~~~~~g~l~vgt~~~~l~~~d~~-g~~~~~~~~~~~~~~~~~~  184 (330)
T 3hxj_A          107 EDIL-YVTSMDGHLYAINTDGTEKWRFKTKKAIYATPIVSEDGTIYVGSNDNYLYAINPD-GTEKWRFKTNDAITSAASI  184 (330)
T ss_dssp             TTEE-EEECTTSEEEEECTTSCEEEEEECSSCCCSCCEECTTSCEEEECTTSEEEEECTT-SCEEEEEECSSCCCSCCEE
T ss_pred             CCEE-EEEecCCEEEEEcCCCCEEEEEcCCCceeeeeEEcCCCEEEEEcCCCEEEEECCC-CCEeEEEecCCCceeeeEE
Confidence            7774 45667888888887621111100000 001 111111111  11 1368888887 7666665545556777777


Q ss_pred             eCCCCEEEeecCCCeEEEEECCCCeeeeeeecCCCCeeeEEEccCCCEEEEEeCCCeEEEEeCCC---------------
Q 042146          109 NPQSNRIVSDTFNETIRIWDIKTGKCLKVLPAHSDPVTAIDFNRDGTMIVTSSYDGLYRILDAST---------------  173 (262)
Q Consensus       109 ~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~d~~~---------------  173 (262)
                      .+++.+.+..   +.|..+| .+++...........+.++...+++. +..++.++.+..+|...               
T Consensus       185 d~~g~l~v~t---~~l~~~d-~~g~~~~~~~~~~~~~~~~~~~~~g~-l~v~t~~~gl~~~~~~g~~~~~~~~~~~~~~~  259 (330)
T 3hxj_A          185 GKDGTIYFGS---DKVYAIN-PDGTEKWNFYAGYWTVTRPAISEDGT-IYVTSLDGHLYAINPDGTEKWRFKTGKRIESS  259 (330)
T ss_dssp             CTTCCEEEES---SSEEEEC-TTSCEEEEECCSSCCCSCCEECTTSC-EEEEETTTEEEEECTTSCEEEEEECSSCCCSC
T ss_pred             cCCCEEEEEe---CEEEEEC-CCCcEEEEEccCCcceeceEECCCCe-EEEEcCCCeEEEECCCCCEeEEeeCCCCcccc
Confidence            7777755544   7889999 77777777665566788888888775 55566777787777533               


Q ss_pred             ---CCccEEEEEcCCCeEEEEecCCCceeeEEeccCCceeEEEEEEecCCCeeEEccccceEEEEEcCCCCeEEEeeecC
Q 042146          174 ---PNGKFILVGTLDNTLRLWNYSTRKILKTYSGYTNSKYCISSTFSVTNGKYIVSHRDPVISVASHPAKNIIASGALDN  250 (262)
Q Consensus       174 ---~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~d~  250 (262)
                         ..+..|..++.+|.|..+|. +++.+..+..                      ....+.++...+++.+++ ++  .
T Consensus       260 ~~~~~~g~l~v~t~~ggl~~~d~-~g~~~~~~~~----------------------~~~~~~~~~~d~~g~l~~-gt--~  313 (330)
T 3hxj_A          260 PVIGNTDTIYFGSYDGHLYAINP-DGTEKWNFET----------------------GSWIIATPVIDENGTIYF-GT--R  313 (330)
T ss_dssp             CEECTTSCEEEECTTCEEEEECT-TSCEEEEEEC----------------------SSCCCSCCEECTTCCEEE-EC--T
T ss_pred             ceEcCCCeEEEecCCCCEEEECC-CCcEEEEEEc----------------------CCccccceEEcCCCEEEE-Ec--C
Confidence               22456777888888999995 6776666543                      333456677777777555 55  7


Q ss_pred             CCcEEEEeecc
Q 042146          251 DRTMKIWTQEK  261 (262)
Q Consensus       251 d~~i~iw~~~~  261 (262)
                      +|.+++...+.
T Consensus       314 ~G~~~~~~~~~  324 (330)
T 3hxj_A          314 NGKFYALFNLE  324 (330)
T ss_dssp             TSCEEEEEC--
T ss_pred             CCeEEEEeccc
Confidence            89999877653

>3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV}

Probab=99.01  E-value=1.3e-07  Score=72.37  Aligned_cols=79  Identities=14%  Similarity=0.108  Sum_probs=58.7

Q ss_pred             cceecccCCcceEEEEEeCCCC-EEEeecCCCeEEEEECCCCeeeeeeecCCCCeeeEEEccCCCEEEEEeCCCeEEEEe
Q 042146           92 SLKTLIGHTNYVFCINFNPQSN-RIVSDTFNETIRIWDIKTGKCLKVLPAHSDPVTAIDFNRDGTMIVTSSYDGLYRILD  170 (262)
Q Consensus        92 ~~~~~~~~~~~v~~~~~~~~~~-~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~d  170 (262)
                      .+..+...........|+|+++ ++++...++.|..|+. +++ ...+..+...+..++++++|+++++...++.|..|+
T Consensus        36 ~~~~l~~~~~~~egp~~~~~g~~l~~~d~~~~~i~~~~~-~g~-~~~~~~~~~~~~gl~~d~dG~l~v~~~~~~~v~~~~  113 (305)
T 3dr2_A           36 RLLTLYDQATWSEGPAWWEAQRTLVWSDLVGRRVLGWRE-DGT-VDVLLDATAFTNGNAVDAQQRLVHCEHGRRAITRSD  113 (305)
T ss_dssp             CCEEEECCCSSEEEEEEEGGGTEEEEEETTTTEEEEEET-TSC-EEEEEESCSCEEEEEECTTSCEEEEETTTTEEEEEC
T ss_pred             ceEEEecCCcCccCCeEeCCCCEEEEEECCCCEEEEEeC-CCC-EEEEeCCCCccceeeECCCCCEEEEECCCCEEEEEC
Confidence            3344444556678899999998 6677788899999998 454 344555667789999999999766655667888888


Q ss_pred             CC
Q 042146          171 AS  172 (262)
Q Consensus       171 ~~  172 (262)
                      ..
T Consensus       114 ~~  115 (305)
T 3dr2_A          114 AD  115 (305)
T ss_dssp             TT
T ss_pred             CC
Confidence            64

>2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H*

Probab=99.00  E-value=1.3e-07  Score=74.43  Aligned_cols=115  Identities=5%  Similarity=-0.103  Sum_probs=83.1

Q ss_pred             EEEEecCCCccceecccCCcceEEEEEeCCCCEEEeec----------CCCeEEEEECCCCeeeeeeecC-------CCC
Q 042146           82 IRLWDVPTATSLKTLIGHTNYVFCINFNPQSNRIVSDT----------FNETIRIWDIKTGKCLKVLPAH-------SDP  144 (262)
Q Consensus        82 i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~----------~dg~i~vwd~~~~~~~~~~~~~-------~~~  144 (262)
                      |.++|..+++.+..+.....+  .++++||+++++++.          .++.|.+||..+.+.+..+...       ...
T Consensus        49 v~v~D~~t~~~~~~i~~g~~p--~i~~spDg~~lyv~n~~~~~~~rg~~~~~v~viD~~t~~~~~~i~~~~~~~~~~g~~  126 (373)
T 2mad_H           49 QWVLDAGSGSILGHVNGGFLP--NPVAAHSGSEFALASTSFSRIAKGKRTDYVEVFDPVTFLPIADIELPDAPRFDVGPY  126 (373)
T ss_pred             EEEEECCCCeEEEEecCCCCC--CeEECCCCCEEEEEeccccccccCCCCCeEEEEECCCCcEEEEEECCCccccccCCC
Confidence            566677777776666544444  899999999998875          3678999999988877766432       123


Q ss_pred             eeeEEEccCCCEEEEEeC--CCeEEEEeCCCC------------------CccEEEEEcCCCeEEEEecCCCceee
Q 042146          145 VTAIDFNRDGTMIVTSSY--DGLYRILDASTP------------------NGKFILVGTLDNTLRLWNYSTRKILK  200 (262)
Q Consensus       145 v~~~~~~~~~~~l~~~~~--dg~i~~~d~~~~------------------~~~~l~~~~~dg~i~i~d~~~~~~~~  200 (262)
                      ...++|+|+|++|+++..  ++.|.++| .+.                  ..+.+++.+.||.+.++|. +++.+.
T Consensus       127 p~~~~~spDG~~l~v~n~~~~~~v~viD-~t~~~~~~~i~~~~~~~~~~~~~~~~~~~~~dg~~~~vd~-~g~~~~  200 (373)
T 2mad_H          127 SWMNANTPNNADLLFFQFAAGPAVGLVV-QGGSSDDQLLSSPTCYHIHPGAPSTFYLLCAQGGLAKTDH-AGGAAG  200 (373)
T ss_pred             ccceEECCCCCEEEEEecCCCCeEEEEE-CCCCEEeEEcCCCceEEEEeCCCceEEEEcCCCCEEEEEC-CCcEEE
Confidence            468999999999998874  57899999 650                  1123345567888888888 776663

>3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris}

Probab=98.99  E-value=1.2e-06  Score=63.88  Aligned_cols=186  Identities=15%  Similarity=0.070  Sum_probs=116.9

Q ss_pred             ccccceecccCcC--ceEEEEEccCCCeEEEecCCC--eEEEeecCCCCCCCCCCCCCCccccCCccccccceeEEEEec
Q 042146           12 PYTLTQTLNGHLR--AVSYVKFSHDGRLLTSSSAEK--TLLTYSLSSISNFDSTPPSPLQKFTGHEQGISDLATIRLWDV   87 (262)
Q Consensus        12 ~~~~~~~~~~h~~--~v~~~~~~~~~~~l~s~~~d~--~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~i~v~d~   87 (262)
                      .++.+.++ .|..  -...+.|++ +.++.+.+.+|  .|+.+                                   |+
T Consensus         8 ~~~v~~~~-phd~~~ftqGL~~~~-~~LyestG~~g~S~v~~v-----------------------------------D~   50 (243)
T 3mbr_X            8 GYRVVKRY-PHDTTAFTEGLFYLR-GHLYESTGETGRSSVRKV-----------------------------------DL   50 (243)
T ss_dssp             CEEEEEEE-ECCTTCCEEEEEEET-TEEEEEECCTTSCEEEEE-----------------------------------ET
T ss_pred             ceEEEEEc-CCCCccccccEEEEC-CEEEEECCCCCCceEEEE-----------------------------------EC
Confidence            34566666 4543  366888986 56666666654  55544                                   56


Q ss_pred             CCCccceecccCCcc-eEEEEEeCCCCEEEeecCCCeEEEEECCCCeeeeeeecCCCCeeeEEEccCCCEEEEEeCCCeE
Q 042146           88 PTATSLKTLIGHTNY-VFCINFNPQSNRIVSDTFNETIRIWDIKTGKCLKVLPAHSDPVTAIDFNRDGTMIVTSSYDGLY  166 (262)
Q Consensus        88 ~~~~~~~~~~~~~~~-v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i  166 (262)
                      .+++.+....-.... -..+++. .+++......++.+.+||.++.+.+.++.....+ ..++  +++..|+.+..++.|
T Consensus        51 ~tgkv~~~~~l~~~~fgeGi~~~-~~~ly~ltw~~~~v~v~D~~tl~~~~ti~~~~~G-wglt--~dg~~L~vSdgs~~l  126 (243)
T 3mbr_X           51 ETGRILQRAEVPPPYFGAGIVAW-RDRLIQLTWRNHEGFVYDLATLTPRARFRYPGEG-WALT--SDDSHLYMSDGTAVI  126 (243)
T ss_dssp             TTCCEEEEEECCTTCCEEEEEEE-TTEEEEEESSSSEEEEEETTTTEEEEEEECSSCC-CEEE--ECSSCEEEECSSSEE
T ss_pred             CCCCEEEEEeCCCCcceeEEEEe-CCEEEEEEeeCCEEEEEECCcCcEEEEEeCCCCc-eEEe--eCCCEEEEECCCCeE
Confidence            666666654322211 1234443 2344445567889999999999999998754332 4444  667777777789999


Q ss_pred             EEEeCCC------------------------CCccEEEEEcCCCeEEEEecCCCceeeEEeccCCceeEEEEEEecCCCe
Q 042146          167 RILDAST------------------------PNGKFILVGTLDNTLRLWNYSTRKILKTYSGYTNSKYCISSTFSVTNGK  222 (262)
Q Consensus       167 ~~~d~~~------------------------~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  222 (262)
                      .++|..+                        .++..++..-.+..|.+.|.++|+.+..+....-...         ...
T Consensus       127 ~~iDp~t~~~~~~I~V~~~g~~~~~lNeLe~~~G~lyanvw~s~~I~vIDp~tG~V~~~idl~~l~~~---------~~~  197 (243)
T 3mbr_X          127 RKLDPDTLQQVGSIKVTAGGRPLDNLNELEWVNGELLANVWLTSRIARIDPASGKVVAWIDLQALVPD---------ADA  197 (243)
T ss_dssp             EEECTTTCCEEEEEECEETTEECCCEEEEEEETTEEEEEETTTTEEEEECTTTCBEEEEEECGGGSTT---------TTS
T ss_pred             EEEeCCCCeEEEEEEEccCCcccccceeeEEeCCEEEEEECCCCeEEEEECCCCCEEEEEECCcCccc---------ccc
Confidence            9999876                        1455444444577899999999999988874321000         000


Q ss_pred             eEEccccceEEEEEcCCCCeEEEee
Q 042146          223 YIVSHRDPVISVASHPAKNIIASGA  247 (262)
Q Consensus       223 ~~~~~~~~v~~~~~~p~~~~l~~~~  247 (262)
                      .-.....-.+.|+++|+++.|+..+
T Consensus       198 ~~~~~~~vlNGIA~d~~~~~lfVTG  222 (243)
T 3mbr_X          198 LTDSTNDVLNGIAFDAEHDRLFVTG  222 (243)
T ss_dssp             CCCTTSSCEEEEEEETTTTEEEEEE
T ss_pred             ccCCcCCceEEEEEcCCCCEEEEEC
Confidence            0000224578999999887777766

>2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413}

Probab=98.99  E-value=1.5e-07  Score=73.35  Aligned_cols=105  Identities=15%  Similarity=0.155  Sum_probs=65.2

Q ss_pred             CceEEEEEccCCCeEEEec--CCCeEEEeecCCCCCCCCCCCCCCccccCCccccccceeEEEEecCCCccceecccCCc
Q 042146           24 RAVSYVKFSHDGRLLTSSS--AEKTLLTYSLSSISNFDSTPPSPLQKFTGHEQGISDLATIRLWDVPTATSLKTLIGHTN  101 (262)
Q Consensus        24 ~~v~~~~~~~~~~~l~s~~--~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~i~v~d~~~~~~~~~~~~~~~  101 (262)
                      ..+..++++|+|+.+++..  .++.++||.+...                         .+.-|  ....  .....+..
T Consensus        17 ~~p~~va~~~~g~~~v~~~~~~~~~~~l~~~~~g-------------------------~~~~~--p~~~--~~~~~~~~   67 (343)
T 2qe8_A           17 LAPGNITLTPDGRLFLSLHQFYQPEMQVAELTQD-------------------------GLIPF--PPQS--GNAIITFD   67 (343)
T ss_dssp             SCEEEEEECTTSCEEEEECGGGCCSCSEEEEETT-------------------------EEEES--CCCC--SSCCCCCS
T ss_pred             CCcceEEECCCCCEEEEeCCCCCCceEEEEECCC-------------------------CeecC--CCcc--cCccccee
Confidence            6789999999999988864  2333555543210                         00000  0000  01123556


Q ss_pred             ceEEEEEeCCCCEEEeecC-----CCeEEEEECCCCeeeeeeecC------CCCeeeEEEccCCCEE
Q 042146          102 YVFCINFNPQSNRIVSDTF-----NETIRIWDIKTGKCLKVLPAH------SDPVTAIDFNRDGTMI  157 (262)
Q Consensus       102 ~v~~~~~~~~~~~l~~~~~-----dg~i~vwd~~~~~~~~~~~~~------~~~v~~~~~~~~~~~l  157 (262)
                      .+..++++++++++++-..     ++.|.+||+.+++.+..+...      ...+..++++|++..+
T Consensus        68 ~p~gv~~d~~g~L~v~D~g~~~~~~~~i~~~d~~tg~~~~~~~~~~~~~~~~~~~~~v~vd~~~g~~  134 (343)
T 2qe8_A           68 TVLGIKSDGNGIVWMLDNGNQSKSVPKLVAWDTLNNQLSRVIYLPPPITLSNSFVNDLAVDLIHNFV  134 (343)
T ss_dssp             CEEEEEECSSSEEEEEECHHHHTSCCEEEEEETTTTEEEEEEECCTTTSCTTCCCCEEEEETTTTEE
T ss_pred             EeeEEEEcCCCcEEEEcCCCCcCCCCeEEEEECCCCeEEEEEECChhhcccccccceEEEecCCCEE
Confidence            7899999999887665443     578999999999877666432      2345788888754433

>1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ...

Probab=98.96  E-value=4.2e-07  Score=69.50  Aligned_cols=170  Identities=12%  Similarity=0.163  Sum_probs=100.3

Q ss_pred             CcCceEEEEEccC-CCeEEEecCCCeEEEeecCCCCCCCC-CC---C---CCCcccc-CCcccc--ccc-----------
Q 042146           22 HLRAVSYVKFSHD-GRLLTSSSAEKTLLTYSLSSISNFDS-TP---P---SPLQKFT-GHEQGI--SDL-----------   79 (262)
Q Consensus        22 h~~~v~~~~~~~~-~~~l~s~~~d~~i~iw~~~~~~~~~~-~~---~---~~~~~~~-~~~~~v--~~~-----------   79 (262)
                      +...+.+++++++ ++++++.. .+.|.+||.+ ...... ..   .   .....+. .....+  ...           
T Consensus        69 ~~~~~~~i~~~~~~g~l~v~~~-~~~l~~~d~~-g~~~~~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~~~~~~~~  146 (314)
T 1pjx_A           69 YGGIPAGCQCDRDANQLFVADM-RLGLLVVQTD-GTFEEIAKKDSEGRRMQGCNDCAFDYEGNLWITAPAGEVAPADYTR  146 (314)
T ss_dssp             EECCEEEEEECSSSSEEEEEET-TTEEEEEETT-SCEEECCSBCTTSCBCBCCCEEEECTTSCEEEEECBCBCTTSCCCB
T ss_pred             CCCCCceEEEecCCCcEEEEEC-CCCEEEEeCC-CCEEEEEeccCCCccccCCcCEEECCCCCEEEEecCcccccccccc
Confidence            5567899999999 77555554 4478889876 322111 10   0   0011111 111111  111           


Q ss_pred             ------eeEEEEecCCCccceecccCCcceEEEEEe----CCCCEEE-eecCCCeEEEEECC-CCe-----eeeeeecCC
Q 042146           80 ------ATIRLWDVPTATSLKTLIGHTNYVFCINFN----PQSNRIV-SDTFNETIRIWDIK-TGK-----CLKVLPAHS  142 (262)
Q Consensus        80 ------~~i~v~d~~~~~~~~~~~~~~~~v~~~~~~----~~~~~l~-~~~~dg~i~vwd~~-~~~-----~~~~~~~~~  142 (262)
                            ..|..++.. ++. ..+..+......++++    |+++.++ +...++.|.+||+. +++     ....+..+.
T Consensus       147 ~~~~~~~~l~~~~~~-g~~-~~~~~~~~~~~~i~~~~~~d~dg~~l~v~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~  224 (314)
T 1pjx_A          147 SMQEKFGSIYCFTTD-GQM-IQVDTAFQFPNGIAVRHMNDGRPYQLIVAETPTKKLWSYDIKGPAKIENKKVWGHIPGTH  224 (314)
T ss_dssp             TTSSSCEEEEEECTT-SCE-EEEEEEESSEEEEEEEECTTSCEEEEEEEETTTTEEEEEEEEETTEEEEEEEEEECCCCS
T ss_pred             cccCCCCeEEEECCC-CCE-EEeccCCCCcceEEEecccCCCCCEEEEEECCCCeEEEEECCCCCccccceEEEECCCCC
Confidence                  235555543 332 2222333456889999    9997654 44567899999986 443     222333333


Q ss_pred             -CCeeeEEEccCCCEEEEEeCCCeEEEEeCCC--------------------CCccEE-EEEcCCCeEEEEecCC
Q 042146          143 -DPVTAIDFNRDGTMIVTSSYDGLYRILDAST--------------------PNGKFI-LVGTLDNTLRLWNYST  195 (262)
Q Consensus       143 -~~v~~~~~~~~~~~l~~~~~dg~i~~~d~~~--------------------~~~~~l-~~~~~dg~i~i~d~~~  195 (262)
                       .....++++++|+++++...++.|.+||..+                    ++++.| ++...++.|..|++..
T Consensus       225 ~~~p~~i~~d~~G~l~v~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~i~~~~dg~~l~v~~~~~~~l~~~~~~~  299 (314)
T 1pjx_A          225 EGGADGMDFDEDNNLLVANWGSSHIEVFGPDGGQPKMRIRCPFEKPSNLHFKPQTKTIFVTEHENNAVWKFEWQR  299 (314)
T ss_dssp             SCEEEEEEEBTTCCEEEEEETTTEEEEECTTCBSCSEEEECSSSCEEEEEECTTSSEEEEEETTTTEEEEEECSS
T ss_pred             CCCCCceEECCCCCEEEEEcCCCEEEEEcCCCCcEeEEEeCCCCCceeEEECCCCCEEEEEeCCCCeEEEEeCCC
Confidence             5678899999999888888889999999873                    456633 3444456777777653

>3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A*

Probab=98.94  E-value=5.9e-08  Score=82.75  Aligned_cols=92  Identities=11%  Similarity=0.130  Sum_probs=58.1

Q ss_pred             eEEEEecCCCcc----ceeccc-CCcceEEEEEeCCCCEEEeec----CCCeEEEEECCCCe-eeeeeecCCCCeeeEEE
Q 042146           81 TIRLWDVPTATS----LKTLIG-HTNYVFCINFNPQSNRIVSDT----FNETIRIWDIKTGK-CLKVLPAHSDPVTAIDF  150 (262)
Q Consensus        81 ~i~v~d~~~~~~----~~~~~~-~~~~v~~~~~~~~~~~l~~~~----~dg~i~vwd~~~~~-~~~~~~~~~~~v~~~~~  150 (262)
                      .|++|++.++..    +..... |...+..+.++||+++|+...    ....|+++|+.++. ....+..+....... +
T Consensus       209 ~v~~~~lgt~~~~~~~v~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~l~~~~~~~~~~-~  287 (693)
T 3iuj_A          209 KVYFHRLGTAQEDDRLVFGAIPAQHHRYVGATVTEDDRFLLISAANSTSGNRLYVKDLSQENAPLLTVQGDLDADVSL-V  287 (693)
T ss_dssp             EEEEEETTSCGGGCEEEESCSGGGCCSEEEEEECTTSCEEEEEEESSSSCCEEEEEETTSTTCCCEEEECSSSSCEEE-E
T ss_pred             EEEEEECCCCcccceEEEecCCCCCeEEEEEEEcCCCCEEEEEEccCCCCcEEEEEECCCCCCceEEEeCCCCceEEE-E
Confidence            467777766542    222333 444578899999999875432    33589999997763 344555555555554 6


Q ss_pred             ccCCCEEEEEe-CC---CeEEEEeCCC
Q 042146          151 NRDGTMIVTSS-YD---GLYRILDAST  173 (262)
Q Consensus       151 ~~~~~~l~~~~-~d---g~i~~~d~~~  173 (262)
                      ++++..|+..+ .+   +.|..+|+..
T Consensus       288 ~~~g~~l~~~t~~~~~~~~l~~~d~~~  314 (693)
T 3iuj_A          288 DNKGSTLYLLTNRDAPNRRLVTVDAAN  314 (693)
T ss_dssp             EEETTEEEEEECTTCTTCEEEEEETTS
T ss_pred             eccCCEEEEEECCCCCCCEEEEEeCCC
Confidence            67666555444 33   5788888875

>3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus}

Probab=98.92  E-value=4.1e-08  Score=78.15  Aligned_cols=158  Identities=9%  Similarity=-0.015  Sum_probs=108.8

Q ss_pred             eeEEEEecCCCccceecccCCcceEEEEEeCCCCEEEeec----------CCCeEEEEECCCCeeeeeeecC-------C
Q 042146           80 ATIRLWDVPTATSLKTLIGHTNYVFCINFNPQSNRIVSDT----------FNETIRIWDIKTGKCLKVLPAH-------S  142 (262)
Q Consensus        80 ~~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~----------~dg~i~vwd~~~~~~~~~~~~~-------~  142 (262)
                      ..|.++|..+.+.+.++..-..+  .++++||+++++++.          .++.|.++|..+++.+..+...       .
T Consensus        99 ~~VsVID~~t~~vv~~I~vG~~P--gia~SpDgk~lyVan~~~~~~~~G~~~~~VsviD~~t~~vv~~I~v~g~~r~~~g  176 (426)
T 3c75_H           99 TQQFVIDGSTGRILGMTDGGFLP--HPVAAEDGSFFAQASTVFERIARGKRTDYVEVFDPVTFLPIADIELPDAPRFLVG  176 (426)
T ss_dssp             EEEEEEETTTTEEEEEEEECSSC--EEEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTCCEEEEEEETTCCCCCBS
T ss_pred             CeEEEEECCCCEEEEEEECCCCC--ceEECCCCCEEEEEeccccccccCCCCCEEEEEECCCCcEEEEEECCCccccccC
Confidence            46888888888888887755555  899999999988876          3678999999999988877532       1


Q ss_pred             CCeeeEEEccCCCEEEEEeC--CCeEEEEeCCC---------C--------CccEEEEEcCCCeEEEEecCCCceeeEEe
Q 042146          143 DPVTAIDFNRDGTMIVTSSY--DGLYRILDAST---------P--------NGKFILVGTLDNTLRLWNYSTRKILKTYS  203 (262)
Q Consensus       143 ~~v~~~~~~~~~~~l~~~~~--dg~i~~~d~~~---------~--------~~~~l~~~~~dg~i~i~d~~~~~~~~~~~  203 (262)
                      .....++++|||++++++..  ++.|.+.|+.+         +        ....+++.+.||.+.+.+..+++......
T Consensus       177 ~~P~~~~~spDGk~lyV~n~~~~~~VsVID~~t~kvv~~I~v~g~~~~~p~g~~~~v~~~~dG~~~~V~~~~~~v~~~~~  256 (426)
T 3c75_H          177 TYQWMNALTPDNKNLLFYQFSPAPAVGVVDLEGKTFDRMLDVPDCYHIFPASPTVFYMNCRDGSLARVDFADGETKVTNT  256 (426)
T ss_dssp             CCGGGSEECTTSSEEEEEECSSSCEEEEEETTTTEEEEEEECCSEEEEEEEETTEEEEEETTSSEEEEECCTTCCEEEEC
T ss_pred             CCcceEEEcCCCCEEEEEecCCCCeEEEEECCCCeEEEEEEcCCceeeccCCCcEEEEEcCCCCEEEEECCCCcEEEEee
Confidence            34578999999999998874  57899999887         1        12344566678888777776555543211


Q ss_pred             ccCCceeEEEEEEecCCCeeEEccccc-eEEEEEcCCCCeEEEeeecCCCcEEEEee
Q 042146          204 GYTNSKYCISSTFSVTNGKYIVSHRDP-VISVASHPAKNIIASGALDNDRTMKIWTQ  259 (262)
Q Consensus       204 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-v~~~~~~p~~~~l~~~~~d~d~~i~iw~~  259 (262)
                       ..         +..        ...+ ...+.+.|++..++..+  ..+.|.+.|+
T Consensus       257 -~~---------~~v--------~~~p~~~~~~~~~dg~~~~~~s--~~g~V~ViD~  293 (426)
T 3c75_H          257 -EV---------FHT--------EDELLINHPAFSLRSGRLVWPT--YTGKIFQADL  293 (426)
T ss_dssp             -CC---------CSC--------TTSCBCSCCEECTTTCEEEEEB--TTSEEEEEEE
T ss_pred             -ee---------ecc--------CCCceeeEeeecCCCCEEEEEe--CCCcEEEEec
Confidence             00         000        1111 12345678877766666  5677777776

>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A

Probab=98.92  E-value=5.3e-07  Score=71.02  Aligned_cols=168  Identities=10%  Similarity=0.031  Sum_probs=102.7

Q ss_pred             CCCeEEEecCCCeEEEeecCCCCCC-CCCCCCCCcc-ccCCcccc---ccceeEEEEecCCCccceecccCCcce-----
Q 042146           34 DGRLLTSSSAEKTLLTYSLSSISNF-DSTPPSPLQK-FTGHEQGI---SDLATIRLWDVPTATSLKTLIGHTNYV-----  103 (262)
Q Consensus        34 ~~~~l~s~~~d~~i~iw~~~~~~~~-~~~~~~~~~~-~~~~~~~v---~~~~~i~v~d~~~~~~~~~~~~~~~~v-----  103 (262)
                      ++..++.++.++.|..+|.++.+.. .......... .......+   ...+.|..+|..+++.+..........     
T Consensus       102 ~~~~v~v~~~~g~l~a~d~~tG~~~W~~~~~~~~~~~p~~~~~~v~v~~~~g~l~~~d~~tG~~~W~~~~~~~~~~~~~~  181 (376)
T 3q7m_A          102 SGGHVYIGSEKAQVYALNTSDGTVAWQTKVAGEALSRPVVSDGLVLIHTSNGQLQALNEADGAVKWTVNLDMPSLSLRGE  181 (376)
T ss_dssp             ETTEEEEEETTSEEEEEETTTCCEEEEEECSSCCCSCCEEETTEEEEECTTSEEEEEETTTCCEEEEEECCC-----CCC
T ss_pred             eCCEEEEEcCCCEEEEEECCCCCEEEEEeCCCceEcCCEEECCEEEEEcCCCeEEEEECCCCcEEEEEeCCCCceeecCC
Confidence            4556778888999999998754321 1000000000 00001111   112368899999998877655322111     


Q ss_pred             EEEEEeCCCCEEEeecCCCeEEEEECCCCeeeeeeecCCCC-------eeeEEEcc--CCCEEEEEeCCCeEEEEeCCC-
Q 042146          104 FCINFNPQSNRIVSDTFNETIRIWDIKTGKCLKVLPAHSDP-------VTAIDFNR--DGTMIVTSSYDGLYRILDAST-  173 (262)
Q Consensus       104 ~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~-------v~~~~~~~--~~~~l~~~~~dg~i~~~d~~~-  173 (262)
                      ......  +..++.++.++.|..+|.++++.+.........       +..+.-.|  .+..++.++.++.+..+|..+ 
T Consensus       182 ~~~~~~--~~~v~~g~~~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~~~p~~~~~~v~~~~~~g~l~~~d~~tG  259 (376)
T 3q7m_A          182 SAPTTA--FGAAVVGGDNGRVSAVLMEQGQMIWQQRISQATGSTEIDRLSDVDTTPVVVNGVVFALAYNGNLTALDLRSG  259 (376)
T ss_dssp             CCCEEE--TTEEEECCTTTEEEEEETTTCCEEEEEECCC-----------CCCCCCEEETTEEEEECTTSCEEEEETTTC
T ss_pred             CCcEEE--CCEEEEEcCCCEEEEEECCCCcEEEEEecccCCCCcccccccccCCCcEEECCEEEEEecCcEEEEEECCCC
Confidence            112222  457888888999999999999988776532110       00011122  356777888889999999865 


Q ss_pred             ---------------CCccEEEEEcCCCeEEEEecCCCceeeEEe
Q 042146          174 ---------------PNGKFILVGTLDNTLRLWNYSTRKILKTYS  203 (262)
Q Consensus       174 ---------------~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~  203 (262)
                                     .++..++.++.++.|..+|..+++.+....
T Consensus       260 ~~~w~~~~~~~~~~~~~~~~l~~~~~~g~l~~~d~~tG~~~w~~~  304 (376)
T 3q7m_A          260 QIMWKRELGSVNDFIVDGNRIYLVDQNDRVMALTIDGGVTLWTQS  304 (376)
T ss_dssp             CEEEEECCCCEEEEEEETTEEEEEETTCCEEEEETTTCCEEEEEC
T ss_pred             cEEeeccCCCCCCceEECCEEEEEcCCCeEEEEECCCCcEEEeec
Confidence                           245667778889999999999999877665

>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482}

Probab=98.91  E-value=1.8e-07  Score=74.58  Aligned_cols=138  Identities=12%  Similarity=0.132  Sum_probs=92.0

Q ss_pred             cceEEEEEeCCCCEEEeecCCCeEEEEECCCCeeeeeeecCCCCeeeEEEccCCCEEEEEeCCC--eEEEEeCCC-----
Q 042146          101 NYVFCINFNPQSNRIVSDTFNETIRIWDIKTGKCLKVLPAHSDPVTAIDFNRDGTMIVTSSYDG--LYRILDAST-----  173 (262)
Q Consensus       101 ~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg--~i~~~d~~~-----  173 (262)
                      .....|+++|+++++++...++.|++||+.+++....... ..... ++|+|+++.|+++..++  .|.+++...     
T Consensus       131 ~~P~~la~d~~g~lyv~d~~~~~I~~id~~~g~~~~~~~~-~~~~~-ia~~~~g~~l~~~d~~~~~~I~~~d~~~~~~~~  208 (409)
T 3hrp_A          131 KYMWGIAAVGNNTVLAYQRDDPRVRLISVDDNKVTTVHPG-FKGGK-PAVTKDKQRVYSIGWEGTHTVYVYMKASGWAPT  208 (409)
T ss_dssp             CCEEEEEECSTTEEEEEETTTTEEEEEETTTTEEEEEEET-CCBCB-CEECTTSSEEEEEBSSTTCEEEEEEGGGTTCEE
T ss_pred             CCceEEEEeCCCCEEEEecCCCcEEEEECCCCEEEEeecc-CCCCc-eeEecCCCcEEEEecCCCceEEEEEcCCCceeE
Confidence            4578999999999888888889999999988776655544 23334 99999999999888766  677776431     


Q ss_pred             -------------------CCccEEEEEcCCCeEEEEecCCCceeeEEeccCCceeEEEEEEecCCCeeEEcccc--ceE
Q 042146          174 -------------------PNGKFILVGTLDNTLRLWNYSTRKILKTYSGYTNSKYCISSTFSVTNGKYIVSHRD--PVI  232 (262)
Q Consensus       174 -------------------~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~v~  232 (262)
                                         +++..|+.+..++.|+.||..++... .+......                 +...  +..
T Consensus       209 ~~g~~~~~~~~~p~~iav~p~~g~lyv~d~~~~I~~~d~~~~~~~-~~~~~~~~-----------------g~~~~~P~~  270 (409)
T 3hrp_A          209 RIGQLGSTFSGKIGAVALDETEEWLYFVDSNKNFGRFNVKTQEVT-LIKQLELS-----------------GSLGTNPGP  270 (409)
T ss_dssp             EEEECCTTSCSCCCBCEECTTSSEEEEECTTCEEEEEETTTCCEE-EEEECCCC-----------------SCCCCSSCC
T ss_pred             EeeeccchhcCCcEEEEEeCCCCeEEEEECCCcEEEEECCCCCEE-EEeccccc-----------------CCCCCCccc
Confidence                               32344555666788888988766532 22110000                 0111  123


Q ss_pred             EEEEcCC-CCeEEEeeecCCCcEEEEeec
Q 042146          233 SVASHPA-KNIIASGALDNDRTMKIWTQE  260 (262)
Q Consensus       233 ~~~~~p~-~~~l~~~~~d~d~~i~iw~~~  260 (262)
                      .++|+|+ +.++++-.  .++.|+.|+.+
T Consensus       271 ~ia~~p~~g~lyv~d~--~~~~I~~~~~~  297 (409)
T 3hrp_A          271 YLIYYFVDSNFYMSDQ--NLSSVYKITPD  297 (409)
T ss_dssp             EEEEETTTTEEEEEET--TTTEEEEECTT
T ss_pred             cEEEeCCCCEEEEEeC--CCCEEEEEecC
Confidence            8999995 55555555  57888888765

>2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii}

Probab=98.86  E-value=5.6e-07  Score=71.37  Aligned_cols=149  Identities=13%  Similarity=0.129  Sum_probs=95.2

Q ss_pred             ceEEEEEeCCCCEEEeecCC------CeEEEEECCCCeeeeeeecCCC---CeeeEEEccCCCEEEEEe-----------
Q 042146          102 YVFCINFNPQSNRIVSDTFN------ETIRIWDIKTGKCLKVLPAHSD---PVTAIDFNRDGTMIVTSS-----------  161 (262)
Q Consensus       102 ~v~~~~~~~~~~~l~~~~~d------g~i~vwd~~~~~~~~~~~~~~~---~v~~~~~~~~~~~l~~~~-----------  161 (262)
                      .-..+.+.|+| +++++..+      |.|.++|.++.+.+..+.....   --..+.|+|+++.++++.           
T Consensus       139 ~Ph~~~~~pdG-i~Vs~~g~~~g~~~g~v~vlD~~T~~v~~~~~~~~~~~~~~Yd~~~~p~~~~mvsS~wg~p~~~~~g~  217 (462)
T 2ece_A          139 RLHTVHCGPDA-IYISALGNEEGEGPGGILMLDHYSFEPLGKWEIDRGDQYLAYDFWWNLPNEVLVSSEWAVPNTIEDGL  217 (462)
T ss_dssp             EEEEEEECSSC-EEEEEEEETTSCSCCEEEEECTTTCCEEEECCSBCTTCCCCCCEEEETTTTEEEECBCCCHHHHTTCC
T ss_pred             cccceeECCCe-EEEEcCCCcCCCCCCeEEEEECCCCeEEEEEccCCCCccccceEEECCCCCEEEEccCcCcccccccc
Confidence            34567788998 66665544      7899999999998888863322   235688899999988885           


Q ss_pred             --------CCCeEEEEeCCC------------------------CCccEEEEEc------CCCeEEEEecCCCceeeEEe
Q 042146          162 --------YDGLYRILDAST------------------------PNGKFILVGT------LDNTLRLWNYSTRKILKTYS  203 (262)
Q Consensus       162 --------~dg~i~~~d~~~------------------------~~~~~l~~~~------~dg~i~i~d~~~~~~~~~~~  203 (262)
                              ...+|.+||+..                        |+++++.+++      .+++|.+|....++.. ..+
T Consensus       218 ~~~~~~~~~~d~V~v~D~~~~k~~~tI~vg~~g~~P~~i~f~~~Pdg~~aYV~~e~~~~~Lss~V~v~~~d~g~~~-~~~  296 (462)
T 2ece_A          218 KLEHLKDRYGNRIHFWDLRKRKRIHSLTLGEENRMALELRPLHDPTKLMGFINMVVSLKDLSSSIWLWFYEDGKWN-AEK  296 (462)
T ss_dssp             CTTTHHHHSCCEEEEEETTTTEEEEEEESCTTEEEEEEEEECSSTTCCEEEEEEEEETTTCCEEEEEEEEETTEEE-EEE
T ss_pred             chhhhhhccCCEEEEEECCCCcEeeEEecCCCCCccceeEeeECCCCCEEEEEEeeeccCCCceEEEEEecCCcee-EEE
Confidence                    478999999864                        4566666555      3456766655443211 100


Q ss_pred             ccCCceeEEEEEEecCCCeeE---E---ccccceEEEEEcCCCCeEEEeeecCCCcEEEEeec
Q 042146          204 GYTNSKYCISSTFSVTNGKYI---V---SHRDPVISVASHPAKNIIASGALDNDRTMKIWTQE  260 (262)
Q Consensus       204 ~~~~~~~~~~~~~~~~~~~~~---~---~~~~~v~~~~~~p~~~~l~~~~~d~d~~i~iw~~~  260 (262)
                             .+..........+-   .   +-......+.+|||+++|.++.+ ..+.|.++++.
T Consensus       297 -------vIdi~~~~v~~~lp~~~~~f~~~~~~pa~I~lS~DGrfLYVSnr-g~d~VavfdV~  351 (462)
T 2ece_A          297 -------VIEIPAEPLEGNLPEILKPFKAVPPLVTDIDISLDDKFLYLSLW-GIGEVRQYDIS  351 (462)
T ss_dssp             -------EEEECCEECCSSCCGGGGGGTEECCCCCCEEECTTSCEEEEEET-TTTEEEEEECS
T ss_pred             -------EEeCCCccccccccccccccccCCCceeEEEECCCCCEEEEEeC-CCCEEEEEEec
Confidence                   00000000000000   0   00245788999999999999987 47899999984

>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A

Probab=98.84  E-value=8.3e-07  Score=69.88  Aligned_cols=194  Identities=11%  Similarity=0.051  Sum_probs=118.8

Q ss_pred             CCeEEEecCCCeEEEeecCCCCCC-CCCCCCCC--------ccccCCcccc-ccceeEEEEecCCCccceecccCCcc--
Q 042146           35 GRLLTSSSAEKTLLTYSLSSISNF-DSTPPSPL--------QKFTGHEQGI-SDLATIRLWDVPTATSLKTLIGHTNY--  102 (262)
Q Consensus        35 ~~~l~s~~~d~~i~iw~~~~~~~~-~~~~~~~~--------~~~~~~~~~v-~~~~~i~v~d~~~~~~~~~~~~~~~~--  102 (262)
                      +..++.++.++.|..+|..+.+.. ........        .......-.+ ...+.+..+|..+++.+.........  
T Consensus       143 ~~~v~v~~~~g~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~v~~g~~~g~l~~~d~~tG~~~w~~~~~~~~~~  222 (376)
T 3q7m_A          143 DGLVLIHTSNGQLQALNEADGAVKWTVNLDMPSLSLRGESAPTTAFGAAVVGGDNGRVSAVLMEQGQMIWQQRISQATGS  222 (376)
T ss_dssp             TTEEEEECTTSEEEEEETTTCCEEEEEECCC-----CCCCCCEEETTEEEECCTTTEEEEEETTTCCEEEEEECCC----
T ss_pred             CCEEEEEcCCCeEEEEECCCCcEEEEEeCCCCceeecCCCCcEEECCEEEEEcCCCEEEEEECCCCcEEEEEecccCCCC
Confidence            346778888999999998664321 11000000        0000000000 11236888999888877665422110  


Q ss_pred             --eE---EEEEeC--CCCEEEeecCCCeEEEEECCCCeeeeeeecCCCCeeeEEEccCCCEEEEEeCCCeEEEEeCCC--
Q 042146          103 --VF---CINFNP--QSNRIVSDTFNETIRIWDIKTGKCLKVLPAHSDPVTAIDFNRDGTMIVTSSYDGLYRILDAST--  173 (262)
Q Consensus       103 --v~---~~~~~~--~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~d~~~--  173 (262)
                        +.   .+...|  .+..++.++.++.+..+|.++++.+.....  .....+..  ++..++.++.++.+..+|..+  
T Consensus       223 ~~~~~~~~~~~~p~~~~~~v~~~~~~g~l~~~d~~tG~~~w~~~~--~~~~~~~~--~~~~l~~~~~~g~l~~~d~~tG~  298 (376)
T 3q7m_A          223 TEIDRLSDVDTTPVVVNGVVFALAYNGNLTALDLRSGQIMWKREL--GSVNDFIV--DGNRIYLVDQNDRVMALTIDGGV  298 (376)
T ss_dssp             -------CCCCCCEEETTEEEEECTTSCEEEEETTTCCEEEEECC--CCEEEEEE--ETTEEEEEETTCCEEEEETTTCC
T ss_pred             cccccccccCCCcEEECCEEEEEecCcEEEEEECCCCcEEeeccC--CCCCCceE--ECCEEEEEcCCCeEEEEECCCCc
Confidence              00   011111  356777888899999999999998877642  23344443  466788888899999998765  


Q ss_pred             -----------------CCccEEEEEcCCCeEEEEecCCCceeeEEeccCCceeEEEEEEecCCCeeEEccccceEE-EE
Q 042146          174 -----------------PNGKFILVGTLDNTLRLWNYSTRKILKTYSGYTNSKYCISSTFSVTNGKYIVSHRDPVIS-VA  235 (262)
Q Consensus       174 -----------------~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~-~~  235 (262)
                                       ..+..|++++.+|.|+.+|.++++.+.......                      ..+.. ..
T Consensus       299 ~~w~~~~~~~~~~~~~~~~~~~l~v~~~~g~l~~~d~~tG~~~~~~~~~~----------------------~~~~~~~~  356 (376)
T 3q7m_A          299 TLWTQSDLLHRLLTSPVLYNGNLVVGDSEGYLHWINVEDGRFVAQQKVDS----------------------SGFQTEPV  356 (376)
T ss_dssp             EEEEECTTTTSCCCCCEEETTEEEEECTTSEEEEEETTTCCEEEEEECCT----------------------TCBCSCCE
T ss_pred             EEEeecccCCCcccCCEEECCEEEEEeCCCeEEEEECCCCcEEEEEecCC----------------------CcceeCCE
Confidence                             234678889999999999999999887776421                      11111 11


Q ss_pred             EcCCCCeEEEeeecCCCcEEEEe
Q 042146          236 SHPAKNIIASGALDNDRTMKIWT  258 (262)
Q Consensus       236 ~~p~~~~l~~~~~d~d~~i~iw~  258 (262)
                      .  .+..|+.++  .+|.|..|+
T Consensus       357 ~--~~~~l~v~~--~~G~l~~~~  375 (376)
T 3q7m_A          357 A--ADGKLLIQA--KDGTVYSIT  375 (376)
T ss_dssp             E--ETTEEEEEB--TTSCEEEEE
T ss_pred             E--ECCEEEEEe--CCCEEEEEe
Confidence            1  245677777  789999886

>1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1

Probab=98.84  E-value=6.5e-07  Score=76.03  Aligned_cols=162  Identities=16%  Similarity=0.158  Sum_probs=109.7

Q ss_pred             EEEEEccCCCeEEEecCCCeEEEeecCCCCCCCCCCCCCCccccCCccccccceeEEEEecCCCccceeccc--CC----
Q 042146           27 SYVKFSHDGRLLTSSSAEKTLLTYSLSSISNFDSTPPSPLQKFTGHEQGISDLATIRLWDVPTATSLKTLIG--HT----  100 (262)
Q Consensus        27 ~~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~i~v~d~~~~~~~~~~~~--~~----  100 (262)
                      ..++++|++..++.++.++..  |......        .     .....+ ....|..+|..+++.+..++.  |.    
T Consensus       246 ~~~~~d~~~~~vy~~~~~~~~--w~~~~~~--------~-----~~gd~~-~~~sv~AlD~~TG~~~W~~~~~~~d~wd~  309 (677)
T 1kb0_A          246 DSMTFDAELNTMYVGTGNGSP--WSHKVRS--------P-----KGGDNL-YLASIVALDPDTGKYKWHYQETPGDNWDY  309 (677)
T ss_dssp             SCEEEETTTTEEEEECCCEES--SCHHHHS--------T-----TCCCCT-TTTEEEEECTTTCCEEEEEESSTTCCSCC
T ss_pred             cceeEcCCCCEEEEECCCCcc--ccCCCCC--------c-----cCCCCe-eeEEEEEEECCCCCEEEEEecCCCccccc
Confidence            357888888888888777654  5321100        0     000000 112578888888888766542  21    


Q ss_pred             ---cceEEEEEeCCC---CEEEeecCCCeEEEEECCCCeeeeeeecCCC-----------Ce------------------
Q 042146          101 ---NYVFCINFNPQS---NRIVSDTFNETIRIWDIKTGKCLKVLPAHSD-----------PV------------------  145 (262)
Q Consensus       101 ---~~v~~~~~~~~~---~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~-----------~v------------------  145 (262)
                         .....+....+|   +.++.++.+|.|+++|.++++.+..+.....           ++                  
T Consensus       310 ~~~~~p~l~~~~~dG~~~~~l~~~~~~G~l~~lD~~tG~~l~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~P~~  389 (677)
T 1kb0_A          310 TSTQPMILADIKIAGKPRKVILHAPKNGFFFVLDRTNGKFISAKNFVPVNWASGYDKHGKPIGIAAARDGSKPQDAVPGP  389 (677)
T ss_dssp             CCCSCCEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEEEESSCCSSEEEECTTSCEEECGGGGCTTSCEECSSCT
T ss_pred             ccCCCcEEEecccCCcEeeEEEEECCCCEEEEEECCCCCEeccccccccCcccccCCCCceeeccccCcCCCccEECcCc
Confidence               122233344467   6789999999999999999998876642210           01                  


Q ss_pred             ------eeEEEccCCCEEEEEeC-------------------------------------------CCeEEEEeCCC---
Q 042146          146 ------TAIDFNRDGTMIVTSSY-------------------------------------------DGLYRILDAST---  173 (262)
Q Consensus       146 ------~~~~~~~~~~~l~~~~~-------------------------------------------dg~i~~~d~~~---  173 (262)
                            ..++++|+..++++...                                           .|.|..||+.+   
T Consensus       390 ~G~~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~g~~~~~~~~~~~~~g~l~A~D~~tG~~  469 (677)
T 1kb0_A          390 YGAHNWHPMSFNPQTGLVYLPAQNVPVNLMDDKKWEFNQAGPGKPQSGTGWNTAKFFNAEPPKSKPFGRLLAWDPVAQKA  469 (677)
T ss_dssp             TCSSCSSCCEEETTTTEEEEEEEECCCEEEECTTCCTTCCCTTSTTGGGTCCCCEEECSSCCCSCCEEEEEEEETTTTEE
T ss_pred             ccccCCCCceEcCCCCEEEEeChhcceeeecccccccccccccccccccccccccccccccCCCCCccEEEEEeCCCCcE
Confidence                  15788998888877543                                           27899999876   


Q ss_pred             ----------------CCccEEEEEcCCCeEEEEecCCCceeeEEec
Q 042146          174 ----------------PNGKFILVGTLDNTLRLWNYSTRKILKTYSG  204 (262)
Q Consensus       174 ----------------~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~  204 (262)
                                      ..+..++.++.||.+++||.++|+.+..+..
T Consensus       470 ~W~~~~~~~~~~g~~~~~g~~v~~g~~dg~l~a~D~~tG~~lw~~~~  516 (677)
T 1kb0_A          470 AWSVEHVSPWNGGTLTTAGNVVFQGTADGRLVAYHAATGEKLWEAPT  516 (677)
T ss_dssp             EEEEEESSSCCCCEEEETTTEEEEECTTSEEEEEETTTCCEEEEEEC
T ss_pred             EeecCCCCCCcCcceEeCCCEEEEECCCCcEEEEECCCCceeeeeeC
Confidence                            3567788899999999999999999999875

>1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida}

Probab=98.83  E-value=9.1e-07  Score=75.29  Aligned_cols=139  Identities=12%  Similarity=0.130  Sum_probs=85.4

Q ss_pred             CCeEEEecCCCeEEEeecCCCCCC-C--CC-CCCCCccccC----Ccccc---------ccceeEEEEecCCCccceecc
Q 042146           35 GRLLTSSSAEKTLLTYSLSSISNF-D--ST-PPSPLQKFTG----HEQGI---------SDLATIRLWDVPTATSLKTLI   97 (262)
Q Consensus        35 ~~~l~s~~~d~~i~iw~~~~~~~~-~--~~-~~~~~~~~~~----~~~~v---------~~~~~i~v~d~~~~~~~~~~~   97 (262)
                      +..+++++.|+.|..+|.++.+.. .  .. ..........    ....+         ...+.|..+|..+++.+..+.
T Consensus       121 ~g~v~v~~~dg~l~AlDa~TG~~~W~~~~~~~~~~~~~~~~sP~v~~g~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~~  200 (689)
T 1yiq_A          121 KGKVYVGVLDGRLEAIDAKTGQRAWSVDTRADHKRSYTITGAPRVVNGKVVIGNGGAEFGVRGYVTAYDAETGKEAWRFY  200 (689)
T ss_dssp             TTEEEEECTTSEEEEEETTTCCEEEEEECCSCTTSCCBCCSCCEEETTEEEECCBCTTTCCBCEEEEEETTTCCEEEEEE
T ss_pred             CCEEEEEccCCEEEEEECCCCCEeeeecCcCCCCCCccccCCcEEECCEEEEEeCCCccCCCCEEEEEECCCCcEEEEec
Confidence            557888889999999998765431 0  10 0000000000    01111         013479999999999876653


Q ss_pred             cC-------------------------------CcceEEEEEeCCCCEEEeecCCCe-------------------EEEE
Q 042146           98 GH-------------------------------TNYVFCINFNPQSNRIVSDTFNET-------------------IRIW  127 (262)
Q Consensus        98 ~~-------------------------------~~~v~~~~~~~~~~~l~~~~~dg~-------------------i~vw  127 (262)
                      ..                               ......++++|+..+++.++.++.                   |..+
T Consensus       201 ~~~~~p~~~~~~~~~~~~~~~~~g~~w~~~~~g~~~w~~~~~d~~~~~vy~~~~~g~~w~~~~~~~~~gd~~y~~~v~Al  280 (689)
T 1yiq_A          201 TVPGDPKLPPEGKGMEIAAKTWFGDAYVEQGGGGTAWDSFAYDPELNLLYIGVGNGSLWDPKWRSQAKGDNLFLSSIVAV  280 (689)
T ss_dssp             SSCCCTTSCCCSHHHHHHHTTCCSSTHHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHHTTCSCCTTTTEEEEE
T ss_pred             ccCCCcccccccccccccccccCCceeeecCCCCccccceeEcCCCCEEEEeCCCCCccccCCCCCCCCCceeeeeEEEE
Confidence            11                               011125788998899999887764                   9999


Q ss_pred             ECCCCeeeeeeec--CC-------CCeeeEEEccCCC---EEEEEeCCCeEEEEeCCC
Q 042146          128 DIKTGKCLKVLPA--HS-------DPVTAIDFNRDGT---MIVTSSYDGLYRILDAST  173 (262)
Q Consensus       128 d~~~~~~~~~~~~--~~-------~~v~~~~~~~~~~---~l~~~~~dg~i~~~d~~~  173 (262)
                      |.++++.+..++.  |.       .+..-.....+|+   .++.++.+|.++++|..+
T Consensus       281 D~~TG~~~W~~~~~~~d~wd~~~~~~~~l~d~~~~G~~~~~v~~~~~~G~l~~lD~~t  338 (689)
T 1yiq_A          281 NADTGEYVWHYQTTPGDAWDYTATQHMILAELPIDGKPRKVLMQAPKNGFFYVIDRAT  338 (689)
T ss_dssp             ETTTCCEEEEEESSTTCCSCCCCCSCEEEEEEEETTEEEEEEEECCTTSEEEEEETTT
T ss_pred             EccCCceeEeeecCCcccccccCCCCcEEEeeccCCcEEEEEEEECCCCeEEEEECCC
Confidence            9999999988764  21       1122222223554   688888899999888654

>2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii}

Probab=98.83  E-value=2.7e-06  Score=67.53  Aligned_cols=159  Identities=11%  Similarity=0.059  Sum_probs=97.3

Q ss_pred             eEEEEecCCCccceecccCC---cceEEEEEeCCCCEEEeec-------------------CCCeEEEEECCCCeeeeee
Q 042146           81 TIRLWDVPTATSLKTLIGHT---NYVFCINFNPQSNRIVSDT-------------------FNETIRIWDIKTGKCLKVL  138 (262)
Q Consensus        81 ~i~v~d~~~~~~~~~~~~~~---~~v~~~~~~~~~~~l~~~~-------------------~dg~i~vwd~~~~~~~~~~  138 (262)
                      .|.++|..+.+.+.++....   ..-..+.|+|+++.+++..                   ...+|.+||+.+++.+.++
T Consensus       165 ~v~vlD~~T~~v~~~~~~~~~~~~~~Yd~~~~p~~~~mvsS~wg~p~~~~~g~~~~~~~~~~~d~V~v~D~~~~k~~~tI  244 (462)
T 2ece_A          165 GILMLDHYSFEPLGKWEIDRGDQYLAYDFWWNLPNEVLVSSEWAVPNTIEDGLKLEHLKDRYGNRIHFWDLRKRKRIHSL  244 (462)
T ss_dssp             EEEEECTTTCCEEEECCSBCTTCCCCCCEEEETTTTEEEECBCCCHHHHTTCCCTTTHHHHSCCEEEEEETTTTEEEEEE
T ss_pred             eEEEEECCCCeEEEEEccCCCCccccceEEECCCCCEEEEccCcCccccccccchhhhhhccCCEEEEEECCCCcEeeEE
Confidence            35566666666666664221   1233578899999888874                   3689999999998888877


Q ss_pred             ecCC--CCeeeEEE--ccCCCEEEEEe------CCCeEEEEe-------------CC-------------------C---
Q 042146          139 PAHS--DPVTAIDF--NRDGTMIVTSS------YDGLYRILD-------------AS-------------------T---  173 (262)
Q Consensus       139 ~~~~--~~v~~~~~--~~~~~~l~~~~------~dg~i~~~d-------------~~-------------------~---  173 (262)
                      ....  .....+.|  +|+++++++++      .+++|.+|.             +.                   .   
T Consensus       245 ~vg~~g~~P~~i~f~~~Pdg~~aYV~~e~~~~~Lss~V~v~~~d~g~~~~~~vIdi~~~~v~~~lp~~~~~f~~~~~~pa  324 (462)
T 2ece_A          245 TLGEENRMALELRPLHDPTKLMGFINMVVSLKDLSSSIWLWFYEDGKWNAEKVIEIPAEPLEGNLPEILKPFKAVPPLVT  324 (462)
T ss_dssp             ESCTTEEEEEEEEECSSTTCCEEEEEEEEETTTCCEEEEEEEEETTEEEEEEEEEECCEECCSSCCGGGGGGTEECCCCC
T ss_pred             ecCCCCCccceeEeeECCCCCEEEEEEeeeccCCCceEEEEEecCCceeEEEEEeCCCccccccccccccccccCCCcee
Confidence            6531  23445555  99999877766      455665422             10                   1   


Q ss_pred             -----CCccEEEEEcC-CCeEEEEecCC---CceeeEEeccCCceeEEEEEEecCCCeeEEccccceEEEEEcCCCCeEE
Q 042146          174 -----PNGKFILVGTL-DNTLRLWNYST---RKILKTYSGYTNSKYCISSTFSVTNGKYIVSHRDPVISVASHPAKNIIA  244 (262)
Q Consensus       174 -----~~~~~l~~~~~-dg~i~i~d~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~  244 (262)
                           +++++|.++.. .+.|.+||+..   .+++..+...... ....   . +.+..   -.+....+.++|+|++|+
T Consensus       325 ~I~lS~DGrfLYVSnrg~d~VavfdV~d~~~~~lv~~I~tGG~~-~~~~---~-~~G~~---~~ggPr~~~lSpDGk~Ly  396 (462)
T 2ece_A          325 DIDISLDDKFLYLSLWGIGEVRQYDISNPFKPVLTGKVKLGGIF-HRAD---H-PAGHK---LTGAPQMLEISRDGRRVY  396 (462)
T ss_dssp             CEEECTTSCEEEEEETTTTEEEEEECSSTTSCEEEEEEECBTTT-TCBC---C-TTSCC---CCSCCCCEEECTTSSEEE
T ss_pred             EEEECCCCCEEEEEeCCCCEEEEEEecCCCCcEEEEEEEeCCee-cccc---c-ccccc---CCCCCCEEEEcCCCCEEE
Confidence                 67888887764 57999999863   3444444421100 0000   0 00000   012357889999999988


Q ss_pred             Eee
Q 042146          245 SGA  247 (262)
Q Consensus       245 ~~~  247 (262)
                      ++.
T Consensus       397 VaN  399 (462)
T 2ece_A          397 VTN  399 (462)
T ss_dssp             EEC
T ss_pred             EEc
Confidence            886

>1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A

Probab=98.82  E-value=1.4e-07  Score=77.21  Aligned_cols=150  Identities=9%  Similarity=0.129  Sum_probs=105.6

Q ss_pred             EEEEecCCCccce--ecccCCcceEEEEE-e-CCCCEEEeec------------------CCCeEEEEECCCCeeeeeee
Q 042146           82 IRLWDVPTATSLK--TLIGHTNYVFCINF-N-PQSNRIVSDT------------------FNETIRIWDIKTGKCLKVLP  139 (262)
Q Consensus        82 i~v~d~~~~~~~~--~~~~~~~~v~~~~~-~-~~~~~l~~~~------------------~dg~i~vwd~~~~~~~~~~~  139 (262)
                      |.+.|+.+.+...  .+. .......+++ . |+++++++++                  .++.+.+.|..+.+.+.++.
T Consensus       114 VavIdl~t~~~~~ii~ip-~g~~phg~~~~~~p~~~~v~~~~~~~~p~~~dg~~l~~~~~~~~~vtvID~~t~~v~~qI~  192 (595)
T 1fwx_A          114 VARVRCDVMKCDAILEIP-NAKGIHGLRPQKWPRSNYVFCNGEDETPLVNDGTNMEDVANYVNVFTAVDADKWEVAWQVL  192 (595)
T ss_dssp             EEEEETTTTEEEEEEECS-SCCSEEEEEECCSSBCSEEEEEECSCEESSCSSSSTTCGGGEEEEEEEEETTTTEEEEEEE
T ss_pred             EEEEECCCceEeeEEeCC-CCCCCcceeeeecCCCcEEEEecccccccCCCCcccccccccCceEEEEECCCCeEEEEEE
Confidence            4445555665554  332 2234667787 4 8899888874                  34689999999999888876


Q ss_pred             cCCCCeeeEEEccCCCEEEEEeCCC---------------eEEEEeCCC-----CCccEEEEEcCCCeEEEEecCC--Cc
Q 042146          140 AHSDPVTAIDFNRDGTMIVTSSYDG---------------LYRILDAST-----PNGKFILVGTLDNTLRLWNYST--RK  197 (262)
Q Consensus       140 ~~~~~v~~~~~~~~~~~l~~~~~dg---------------~i~~~d~~~-----~~~~~l~~~~~dg~i~i~d~~~--~~  197 (262)
                      -.. ....++++|+|+++++++.+.               .+.++|...     ++|++...    +.|.+.|.++  ++
T Consensus       193 Vgg-~pd~~~~spdGk~~~vt~~~se~~~~i~~~~~~~~d~v~V~~~~~~~~~v~~Gk~~~i----~~V~VID~~~~~~~  267 (595)
T 1fwx_A          193 VSG-NLDNCDADYEGKWAFSTSYNSEKGMTLPEMTAAEMDHIVVFNIAEIEKAIAAGDYQEL----NGVKVVDGRKEASS  267 (595)
T ss_dssp             ESS-CCCCEEECSSSSEEEEEESCTTCCSSHHHHTCCSEEEEEEEEHHHHHHHHHHTCSEEE----TTEEEEECSGGGCC
T ss_pred             eCC-CccceEECCCCCEEEEEecCcccCcchhhccccccceEEEeeccceeEeccCCCeeEE----CcEEEEeCcccCCc
Confidence            433 457788999999999988663               467777554     45554443    4599999988  54


Q ss_pred             e-eeEEeccCCceeEEEEEEecCCCeeEEccccceEEEEEcCCCCeEEEeeecCCCcEEEEeecc
Q 042146          198 I-LKTYSGYTNSKYCISSTFSVTNGKYIVSHRDPVISVASHPAKNIIASGALDNDRTMKIWTQEK  261 (262)
Q Consensus       198 ~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~d~d~~i~iw~~~~  261 (262)
                      . +..++                       -.....++.++|||+++++++. .+.+|.++|+.+
T Consensus       268 ~~~~~Ip-----------------------vg~~PhGv~~sPDGk~v~V~~~-~s~~VsVid~~~  308 (595)
T 1fwx_A          268 LFTRYIP-----------------------IANNPHGCNMAPDKKHLCVAGK-LSPTVTVLDVTR  308 (595)
T ss_dssp             SSEEEEE-----------------------EESSCCCEEECTTSSEEEEECT-TSSBEEEEEGGG
T ss_pred             eeEEEEe-----------------------cCCCceEEEEcCCCCEEEEeCC-CCCeEEEEECcc
Confidence            4 45554                       2335568999999998888775 588999999863

>3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis}

Probab=98.81  E-value=3.5e-07  Score=70.50  Aligned_cols=173  Identities=10%  Similarity=0.029  Sum_probs=101.1

Q ss_pred             CcCceEEEEEccCCCeEEEecCCCeEEEeecCCCCCCCCCCCCCC---ccccCCcccccc-ceeEEEEecCCCccceecc
Q 042146           22 HLRAVSYVKFSHDGRLLTSSSAEKTLLTYSLSSISNFDSTPPSPL---QKFTGHEQGISD-LATIRLWDVPTATSLKTLI   97 (262)
Q Consensus        22 h~~~v~~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~---~~~~~~~~~v~~-~~~i~v~d~~~~~~~~~~~   97 (262)
                      +...+.++...+++. +..++.+  |..+|...............   ..+....-.+.. .+.|..+|.. ++......
T Consensus        58 ~~~~~~~~~~~~~g~-l~v~t~~--l~~~d~~g~~~~~~~~~~~~~~~~~~~~~~l~v~t~~~~l~~~d~~-g~~~~~~~  133 (330)
T 3hxj_A           58 GEIIECRPSIGKDGT-IYFGSDK--VYAINPDGTEKWRFDTKKAIVSDFTIFEDILYVTSMDGHLYAINTD-GTEKWRFK  133 (330)
T ss_dssp             GGEEEECCEETTTTE-ECCSSCE--EEEECCCGGGGGGSCC-----CCEEEETTEEEEECTTSEEEEECTT-SCEEEEEE
T ss_pred             CCCcccceEEecCCc-EEEecCc--EEEECCCCcEEEEEECCCCcccCceEECCEEEEEecCCEEEEEcCC-CCEEEEEc
Confidence            344456777766665 5555544  88887533221111111110   011111111111 2367888877 66665555


Q ss_pred             cCCcceEEEEEeCCCCEEEeecCCCeEEEEECCCCeeeeeeecCCCCeeeEEEccCCCEEEEEeCCCeEEEEeCCC----
Q 042146           98 GHTNYVFCINFNPQSNRIVSDTFNETIRIWDIKTGKCLKVLPAHSDPVTAIDFNRDGTMIVTSSYDGLYRILDAST----  173 (262)
Q Consensus        98 ~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~d~~~----  173 (262)
                      .....+.++...+++. +..++.++.|..+|.. ++.+..+......+.++...+++.+++. +  +.+..+|...    
T Consensus       134 ~~~~~~~~~~~~~~g~-l~vgt~~~~l~~~d~~-g~~~~~~~~~~~~~~~~~~d~~g~l~v~-t--~~l~~~d~~g~~~~  208 (330)
T 3hxj_A          134 TKKAIYATPIVSEDGT-IYVGSNDNYLYAINPD-GTEKWRFKTNDAITSAASIGKDGTIYFG-S--DKVYAINPDGTEKW  208 (330)
T ss_dssp             CSSCCCSCCEECTTSC-EEEECTTSEEEEECTT-SCEEEEEECSSCCCSCCEECTTCCEEEE-S--SSEEEECTTSCEEE
T ss_pred             CCCceeeeeEEcCCCE-EEEEcCCCEEEEECCC-CCEeEEEecCCCceeeeEEcCCCEEEEE-e--CEEEEECCCCcEEE
Confidence            4555566667776666 5556778999999998 8777777665667778888777775544 4  7788887321    


Q ss_pred             --------------CCccEEEEEcCCCeEEEEecCCCceeeEEec
Q 042146          174 --------------PNGKFILVGTLDNTLRLWNYSTRKILKTYSG  204 (262)
Q Consensus       174 --------------~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~  204 (262)
                                    .....+..++.++.|..+|. +++.+..+..
T Consensus       209 ~~~~~~~~~~~~~~~~~g~l~v~t~~~gl~~~~~-~g~~~~~~~~  252 (330)
T 3hxj_A          209 NFYAGYWTVTRPAISEDGTIYVTSLDGHLYAINP-DGTEKWRFKT  252 (330)
T ss_dssp             EECCSSCCCSCCEECTTSCEEEEETTTEEEEECT-TSCEEEEEEC
T ss_pred             EEccCCcceeceEECCCCeEEEEcCCCeEEEECC-CCCEeEEeeC
Confidence                          11235666777788888874 5666655553

>1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1

Probab=98.81  E-value=4.7e-07  Score=76.87  Aligned_cols=140  Identities=15%  Similarity=0.149  Sum_probs=86.8

Q ss_pred             CCCeEEEecCCCeEEEeecCCCCCC---CCC-CC---CCC---ccccCCccccc-------cceeEEEEecCCCccceec
Q 042146           34 DGRLLTSSSAEKTLLTYSLSSISNF---DST-PP---SPL---QKFTGHEQGIS-------DLATIRLWDVPTATSLKTL   96 (262)
Q Consensus        34 ~~~~l~s~~~d~~i~iw~~~~~~~~---~~~-~~---~~~---~~~~~~~~~v~-------~~~~i~v~d~~~~~~~~~~   96 (262)
                      ++..+++++.|+.|..+|..+.+..   ... ..   ...   .......--+.       ..+.|+.+|..+++.+..+
T Consensus       127 ~~~~v~v~~~dg~l~alD~~tG~~~W~~~~~~~~~~~~~~~~~p~v~~~~v~v~~~~~~~~~~g~v~a~D~~tG~~~W~~  206 (677)
T 1kb0_A          127 WKGKVYVGAWDGRLIALDAATGKEVWHQNTFEGQKGSLTITGAPRVFKGKVIIGNGGAEYGVRGYITAYDAETGERKWRW  206 (677)
T ss_dssp             ETTEEEEECTTSEEEEEETTTCCEEEEEETTTTCCSSCBCCSCCEEETTEEEECCBCTTTCCBCEEEEEETTTCCEEEEE
T ss_pred             ECCEEEEEcCCCEEEEEECCCCCEEeeecCCcCcCcCcccccCcEEECCEEEEEecccccCCCCEEEEEECCCCcEEEEe
Confidence            3567888889999999998765321   110 00   000   00000000000       1347999999999887765


Q ss_pred             ccCCc--------------------------------ceEEEEEeCCCCEEEeecCCC-------------------eEE
Q 042146           97 IGHTN--------------------------------YVFCINFNPQSNRIVSDTFNE-------------------TIR  125 (262)
Q Consensus        97 ~~~~~--------------------------------~v~~~~~~~~~~~l~~~~~dg-------------------~i~  125 (262)
                      .....                                ....++++|++.+++.++.++                   .|.
T Consensus       207 ~~~~~~~~~~~~~~~~~~g~~~w~~~g~~~~~~~g~~~w~~~~~d~~~~~vy~~~~~~~~w~~~~~~~~~gd~~~~~sv~  286 (677)
T 1kb0_A          207 FSVPGDPSKPFEDESMKRAARTWDPSGKWWEAGGGGTMWDSMTFDAELNTMYVGTGNGSPWSHKVRSPKGGDNLYLASIV  286 (677)
T ss_dssp             ESSCCCTTSCCSSHHHHHHHTTSCGGGCHHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHSTTCCCCTTTTEEE
T ss_pred             ccCCCCccccccccccccccccccccCceeEeCCCcccccceeEcCCCCEEEEECCCCccccCCCCCccCCCCeeeEEEE
Confidence            43211                                113578899999988877664                   599


Q ss_pred             EEECCCCeeeeeeecCC---------CCeeeEEEccCC---CEEEEEeCCCeEEEEeCCC
Q 042146          126 IWDIKTGKCLKVLPAHS---------DPVTAIDFNRDG---TMIVTSSYDGLYRILDAST  173 (262)
Q Consensus       126 vwd~~~~~~~~~~~~~~---------~~v~~~~~~~~~---~~l~~~~~dg~i~~~d~~~  173 (262)
                      .+|.++++.+..++...         ....-+....+|   ..++.++.+|.++++|..+
T Consensus       287 AlD~~TG~~~W~~~~~~~d~wd~~~~~~p~l~~~~~dG~~~~~l~~~~~~G~l~~lD~~t  346 (677)
T 1kb0_A          287 ALDPDTGKYKWHYQETPGDNWDYTSTQPMILADIKIAGKPRKVILHAPKNGFFFVLDRTN  346 (677)
T ss_dssp             EECTTTCCEEEEEESSTTCCSCCCCCSCCEEEEEEETTEEEEEEEECCTTSEEEEEETTT
T ss_pred             EEECCCCCEEEEEecCCCcccccccCCCcEEEecccCCcEeeEEEEECCCCEEEEEECCC
Confidence            99999999988875421         112223333466   6788888999999998754

>1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida}

Probab=98.80  E-value=8.9e-07  Score=75.35  Aligned_cols=161  Identities=13%  Similarity=0.135  Sum_probs=107.4

Q ss_pred             EEEEccCCCeEEEecCCCeEEEeecCCCCCCCCCCCCCCccccCCccccccceeEEEEecCCCccceeccc--CC-----
Q 042146           28 YVKFSHDGRLLTSSSAEKTLLTYSLSSISNFDSTPPSPLQKFTGHEQGISDLATIRLWDVPTATSLKTLIG--HT-----  100 (262)
Q Consensus        28 ~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~i~v~d~~~~~~~~~~~~--~~-----  100 (262)
                      .+++.|+...++.++.++..  |......      +       .....+ ....|..+|..+++.+..++.  |.     
T Consensus       239 ~~~~d~~~~~vy~~~~~g~~--w~~~~~~------~-------~~gd~~-y~~~v~AlD~~TG~~~W~~~~~~~d~wd~~  302 (689)
T 1yiq_A          239 SFAYDPELNLLYIGVGNGSL--WDPKWRS------Q-------AKGDNL-FLSSIVAVNADTGEYVWHYQTTPGDAWDYT  302 (689)
T ss_dssp             CEEEETTTTEEEEECCCEES--SCHHHHH------T-------TCSCCT-TTTEEEEEETTTCCEEEEEESSTTCCSCCC
T ss_pred             ceeEcCCCCEEEEeCCCCCc--cccCCCC------C-------CCCCce-eeeeEEEEEccCCceeEeeecCCccccccc
Confidence            57888888889888887752  4311000      0       000011 112588899999988876643  21     


Q ss_pred             --cceEEEEEeCCCC---EEEeecCCCeEEEEECCCCeeeeeeecCCC--------------------------------
Q 042146          101 --NYVFCINFNPQSN---RIVSDTFNETIRIWDIKTGKCLKVLPAHSD--------------------------------  143 (262)
Q Consensus       101 --~~v~~~~~~~~~~---~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~--------------------------------  143 (262)
                        .+........+|+   .++.++.+|.++++|.++++.+...+....                                
T Consensus       303 ~~~~~~l~d~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~l~~~~~~~~~w~~~~~~~~~~pi~~~~~~~~~~~~~~~~~~  382 (689)
T 1yiq_A          303 ATQHMILAELPIDGKPRKVLMQAPKNGFFYVIDRATGELLSAKGIVPQSWTKGMDMKTGRPILDEENAAYWKNGKRNLVT  382 (689)
T ss_dssp             CCSCEEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEEEESSCCSSEEEEETTTTEEEECHHHHCTTTSSSCEEES
T ss_pred             CCCCcEEEeeccCCcEEEEEEEECCCCeEEEEECCCCCEeccccccccccccccCccCCCcccchhhccccCCCCeeEeC
Confidence              1222223333565   788999999999999999988743321100                                


Q ss_pred             -------CeeeEEEccCCCEEEEEeC---------------------------------------------CCeEEEEeC
Q 042146          144 -------PVTAIDFNRDGTMIVTSSY---------------------------------------------DGLYRILDA  171 (262)
Q Consensus       144 -------~v~~~~~~~~~~~l~~~~~---------------------------------------------dg~i~~~d~  171 (262)
                             .-..++|+|+..++++...                                             +|.|..||+
T Consensus       383 p~~~Gg~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~~~~~~~~~~~~g~l~A~D~  462 (689)
T 1yiq_A          383 PAFWGAHDWQPMSYNPDTGLVYIPAHIMSAYYEHIPEAPKRNPFKSMYQLGLRTGMMPEGAEGLLEMAKSWSGKLIAWDP  462 (689)
T ss_dssp             SCTTCSSCSSCCEEETTTTEEEEEEEECCEEEECCSSCCCCCSCTTSCCCSSEECCCCSSHHHHHHHHTTCEEEEEEEET
T ss_pred             CCcccccCCCcceECCCCCEEEEeccccceeeeeccccccccccccccccCccccccCcccccCCCCCCCcceeEEEEEC
Confidence                   0123788888777776532                                             378999999


Q ss_pred             CC-------------------CCccEEEEEcCCCeEEEEecCCCceeeEEec
Q 042146          172 ST-------------------PNGKFILVGTLDNTLRLWNYSTRKILKTYSG  204 (262)
Q Consensus       172 ~~-------------------~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~  204 (262)
                      .+                   ..+..++.|+.||.++.||.++|+.+..++.
T Consensus       463 ~tG~~~W~~~~~~~~~~g~~~tagglvf~gt~dg~l~a~D~~tG~~lw~~~~  514 (689)
T 1yiq_A          463 VKQQAAWEVPYVTIFNGGTLSTAGNLVFEGSADGRVIAYAADTGEKLWEQPA  514 (689)
T ss_dssp             TTTEEEEEEEESSSCCCCEEEETTTEEEEECTTSEEEEEETTTCCEEEEEEC
T ss_pred             CCCCeEeEccCCCCccCccceECCCEEEEECCCCcEEEEECCCCccceeeeC
Confidence            86                   3567888999999999999999999988875

>1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A

Probab=98.73  E-value=1e-06  Score=72.29  Aligned_cols=200  Identities=9%  Similarity=0.094  Sum_probs=121.2

Q ss_pred             ccccceeccc-CcCceEEEEE-c-cCCCeEEEecCCCeEEEeecCCCCCCCCCCCCCCccccCCccccccceeEEEEecC
Q 042146           12 PYTLTQTLNG-HLRAVSYVKF-S-HDGRLLTSSSAEKTLLTYSLSSISNFDSTPPSPLQKFTGHEQGISDLATIRLWDVP   88 (262)
Q Consensus        12 ~~~~~~~~~~-h~~~v~~~~~-~-~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~i~v~d~~   88 (262)
                      .++..+.+.- .......+++ + |+++++++++.... =+          ......+.      ..-...+.+.+.|.+
T Consensus       121 t~~~~~ii~ip~g~~phg~~~~~~p~~~~v~~~~~~~~-p~----------~~dg~~l~------~~~~~~~~vtvID~~  183 (595)
T 1fwx_A          121 VMKCDAILEIPNAKGIHGLRPQKWPRSNYVFCNGEDET-PL----------VNDGTNME------DVANYVNVFTAVDAD  183 (595)
T ss_dssp             TTEEEEEEECSSCCSEEEEEECCSSBCSEEEEEECSCE-ES----------SCSSSSTT------CGGGEEEEEEEEETT
T ss_pred             CceEeeEEeCCCCCCCcceeeeecCCCcEEEEeccccc-cc----------CCCCcccc------cccccCceEEEEECC
Confidence            4554453321 2245778887 5 99999988864321 00          00000000      011122357778888


Q ss_pred             CCccceecccCCcceEEEEEeCCCCEEEeecCCC--------------------------------------eEEEEECC
Q 042146           89 TATSLKTLIGHTNYVFCINFNPQSNRIVSDTFNE--------------------------------------TIRIWDIK  130 (262)
Q Consensus        89 ~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg--------------------------------------~i~vwd~~  130 (262)
                      +.+...++.--. .-..++++|+|+++++.+.+.                                      .|.|.|.+
T Consensus       184 t~~v~~qI~Vgg-~pd~~~~spdGk~~~vt~~~se~~~~i~~~~~~~~d~v~V~~~~~~~~~v~~Gk~~~i~~V~VID~~  262 (595)
T 1fwx_A          184 KWEVAWQVLVSG-NLDNCDADYEGKWAFSTSYNSEKGMTLPEMTAAEMDHIVVFNIAEIEKAIAAGDYQELNGVKVVDGR  262 (595)
T ss_dssp             TTEEEEEEEESS-CCCCEEECSSSSEEEEEESCTTCCSSHHHHTCCSEEEEEEEEHHHHHHHHHHTCSEEETTEEEEECS
T ss_pred             CCeEEEEEEeCC-CccceEECCCCCEEEEEecCcccCcchhhccccccceEEEeeccceeEeccCCCeeEECcEEEEeCc
Confidence            777666654222 345567888888887766442                                      47788887


Q ss_pred             C--Cee-eeeeecCCCCeeeEEEccCCCEEEEEe-CCCeEEEEeCCC-------------------------------CC
Q 042146          131 T--GKC-LKVLPAHSDPVTAIDFNRDGTMIVTSS-YDGLYRILDAST-------------------------------PN  175 (262)
Q Consensus       131 ~--~~~-~~~~~~~~~~v~~~~~~~~~~~l~~~~-~dg~i~~~d~~~-------------------------------~~  175 (262)
                      +  ++. +..+... ....++.++|||+++++++ .+.+|.++|+..                               ++
T Consensus       263 ~~~~~~~~~~Ipvg-~~PhGv~~sPDGk~v~V~~~~s~~VsVid~~~~~~~~~~~l~~~~~v~~~v~vG~gP~h~aF~~d  341 (595)
T 1fwx_A          263 KEASSLFTRYIPIA-NNPHGCNMAPDKKHLCVAGKLSPTVTVLDVTRFDAVFYENADPRSAVVAEPELGLGPLHTAFDGR  341 (595)
T ss_dssp             GGGCCSSEEEEEEE-SSCCCEEECTTSSEEEEECTTSSBEEEEEGGGHHHHHHSCCCGGGGEEECCBCCSCEEEEEECTT
T ss_pred             ccCCceeEEEEecC-CCceEEEEcCCCCEEEEeCCCCCeEEEEECcccccccccccCcccceEEEcCCCCCcceEEECCC
Confidence            7  444 4455432 3457899999999877665 788999999882                               67


Q ss_pred             ccEEEEEcCCCeEEEEecCC----------CceeeEEeccCCceeEEEEEEecCCCeeEEccccceEEEEEcCCCCeEEE
Q 042146          176 GKFILVGTLDNTLRLWNYST----------RKILKTYSGYTNSKYCISSTFSVTNGKYIVSHRDPVISVASHPAKNIIAS  245 (262)
Q Consensus       176 ~~~l~~~~~dg~i~i~d~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~  245 (262)
                      |...++.-.|+.|.+||+.+          .+.+..+..+-...                 |...-..+..+|||++|++
T Consensus       342 G~aY~t~~ldsqV~kwdi~~a~~~~~g~~~~~vi~kidV~yqpG-----------------h~~~~~g~t~~~DGk~l~~  404 (595)
T 1fwx_A          342 GNAYTSLFLDSQVVKWNIEDAIRAYAGEKVDPIKDKLDVHYQPG-----------------HLKTVMGETLDATNDWLVC  404 (595)
T ss_dssp             SEEEEEETTTTEEEEEEHHHHHHHHHTCSCCCEEEEEECSSCEE-----------------EEEETTTTSTTCCSSEEEE
T ss_pred             CeEEEEEecCCcEEEEEhhHhhhhhcccccceeEEEeecccccc-----------------cceeccceEeCCCCCEEEE
Confidence            75555667889999999876          44555555422110                 1111123356889998888


Q ss_pred             ee
Q 042146          246 GA  247 (262)
Q Consensus       246 ~~  247 (262)
                      +.
T Consensus       405 ~N  406 (595)
T 1fwx_A          405 LS  406 (595)
T ss_dssp             EE
T ss_pred             cC
Confidence            76

>1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1

Probab=98.68  E-value=1.6e-07  Score=73.46  Aligned_cols=113  Identities=10%  Similarity=0.024  Sum_probs=85.5

Q ss_pred             eEEEEecCCCccceecccCCcceEEEEEeCCCCEEEeec----------CCCeEEEEECCCCeeeeeeecCC-------C
Q 042146           81 TIRLWDVPTATSLKTLIGHTNYVFCINFNPQSNRIVSDT----------FNETIRIWDIKTGKCLKVLPAHS-------D  143 (262)
Q Consensus        81 ~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~----------~dg~i~vwd~~~~~~~~~~~~~~-------~  143 (262)
                      .|.++|..+++.+.++.....+  .+.++|++++++++.          .++.|.+||+.+++.+.++..+.       .
T Consensus        47 ~vsvID~~t~~v~~~i~vG~~P--~i~~spDg~~lyVan~~~~r~~~G~~~~~VsviD~~T~~vv~~I~v~~~~~~~~g~  124 (368)
T 1mda_H           47 ENWVSCAGCGVTLGHSLGAFLS--LAVAGHSGSDFALASTSFARSAKGKRTDYVEVFDPVTFLPIADIELPDAPRFSVGP  124 (368)
T ss_dssp             EEEEEETTTTEEEEEEEECTTC--EEEECTTSSCEEEEEEEETTTTSSSEEEEEEEECTTTCCEEEEEEETTSCSCCBSC
T ss_pred             eEEEEECCCCeEEEEEeCCCCC--ceEECCCCCEEEEEcccccccccCCCCCEEEEEECCCCCEEEEEECCCccccccCC
Confidence            4677888888888888755556  799999999998875          36889999999999998886431       2


Q ss_pred             CeeeEEEccCCCEEEEEeC--CCeEEE--EeCCC-------------CCc-cEEEEEcCCCeEEEEecCC
Q 042146          144 PVTAIDFNRDGTMIVTSSY--DGLYRI--LDAST-------------PNG-KFILVGTLDNTLRLWNYST  195 (262)
Q Consensus       144 ~v~~~~~~~~~~~l~~~~~--dg~i~~--~d~~~-------------~~~-~~l~~~~~dg~i~i~d~~~  195 (262)
                      ....++++|||++++++..  +..+.+  +|+.+             +++ ..+++.+.||.+.+.|+.+
T Consensus       125 ~P~~ia~SpDGk~lyVan~~~~~~v~V~~iD~~tv~~i~v~~~~~~~p~g~~~~~~~~~dg~~~~vd~~~  194 (368)
T 1mda_H          125 RVHIIGNCASSACLLFFLFGSSAAAGLSVPGASDDQLTKSASCFHIHPGAAATHYLGSCPASLAASDLAA  194 (368)
T ss_dssp             CTTSEEECTTSSCEEEEECSSSCEEEEEETTTEEEEEEECSSCCCCEEEETTEEECCCCTTSCEEEECCS
T ss_pred             CcceEEEcCCCCEEEEEccCCCCeEEEEEEchhhceEEECCCceEEccCCCeEEEEEcCCCCEEEEECcc
Confidence            3578999999999998874  467888  88853             112 2334556677777777775

>3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli}

Probab=98.65  E-value=4.4e-05  Score=56.36  Aligned_cols=189  Identities=11%  Similarity=0.138  Sum_probs=115.6

Q ss_pred             eecccCcCceEEEEEccCCCeE-EEecCCCeEEEeecCCCCCCCCCCCCCCccccCCccccccceeEEEEecCCCcccee
Q 042146           17 QTLNGHLRAVSYVKFSHDGRLL-TSSSAEKTLLTYSLSSISNFDSTPPSPLQKFTGHEQGISDLATIRLWDVPTATSLKT   95 (262)
Q Consensus        17 ~~~~~h~~~v~~~~~~~~~~~l-~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~i~v~d~~~~~~~~~   95 (262)
                      +.+.+-.+.+..++|+|++..| ++...++.|...|.                                   . ++.+..
T Consensus        20 ~~l~g~~~~lSGla~~~~~~~L~aV~d~~~~I~~ld~-----------------------------------~-g~v~~~   63 (255)
T 3qqz_A           20 KEIAGITNNISSLTWSAQSNTLFSTINKPAAIVEMTT-----------------------------------N-GDLIRT   63 (255)
T ss_dssp             EECTTCCSCEEEEEEETTTTEEEEEEETTEEEEEEET-----------------------------------T-CCEEEE
T ss_pred             eECCCcccCcceeEEeCCCCEEEEEECCCCeEEEEeC-----------------------------------C-CCEEEE
Confidence            3455666789999999986655 44666776666544                                   2 333333


Q ss_pred             cc-cCCcceEEEEEeCCCCEEEeecCCCeEEEEECCCCee---eeeee------cCCCCeeeEEEccCCCEEEEEeCCC-
Q 042146           96 LI-GHTNYVFCINFNPQSNRIVSDTFNETIRIWDIKTGKC---LKVLP------AHSDPVTAIDFNRDGTMIVTSSYDG-  164 (262)
Q Consensus        96 ~~-~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~---~~~~~------~~~~~v~~~~~~~~~~~l~~~~~dg-  164 (262)
                      +. .-......|++.+++.++++.-.++.+.++++.....   +....      ..+.....++|+|.++.|+++.... 
T Consensus        64 i~l~g~~D~EGIa~~~~g~~~vs~E~~~~l~~~~v~~~~~i~~~~~~~~~~~~~~~N~g~EGLA~d~~~~~L~va~E~~p  143 (255)
T 3qqz_A           64 IPLDFVKDLETIEYIGDNQFVISDERDYAIYVISLTPNSEVKILKKIKIPLQESPTNCGFEGLAYSRQDHTFWFFKEKNP  143 (255)
T ss_dssp             EECSSCSSEEEEEECSTTEEEEEETTTTEEEEEEECTTCCEEEEEEEECCCSSCCCSSCCEEEEEETTTTEEEEEEESSS
T ss_pred             EecCCCCChHHeEEeCCCEEEEEECCCCcEEEEEcCCCCeeeeeeeeccccccccccCCcceEEEeCCCCEEEEEECcCC
Confidence            32 1124577888888888777765677888888754331   22221      2345678999999887777766544 


Q ss_pred             -eEEEEeC--C-------------------C--------CCccEEEEEcCCCeEEEEecCCCceeeEEeccCCceeEEEE
Q 042146          165 -LYRILDA--S-------------------T--------PNGKFILVGTLDNTLRLWNYSTRKILKTYSGYTNSKYCISS  214 (262)
Q Consensus       165 -~i~~~d~--~-------------------~--------~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~  214 (262)
                       .|..|+-  .                   .        ..+++++....+..|.++|.. |+.+..+.-.... ..   
T Consensus       144 ~~i~~~~g~~~~~~l~i~~~~~~~~~~~~~d~S~l~~dp~tg~lliLS~~s~~L~~~d~~-g~~~~~~~L~~g~-~~---  218 (255)
T 3qqz_A          144 IEVYKVNGLLSSNELHISKDKALQRQFTLDDVSGAEFNQQKNTLLVLSHESRALQEVTLV-GEVIGEMSLTKGS-RG---  218 (255)
T ss_dssp             EEEEEEESTTCSSCCEEEECHHHHHTCCSSCCCEEEEETTTTEEEEEETTTTEEEEECTT-CCEEEEEECSTTG-GG---
T ss_pred             ceEEEEcccccCCceeeecchhhccccccCCceeEEEcCCCCeEEEEECCCCeEEEEcCC-CCEEEEEEcCCcc-CC---
Confidence             3444441  0                   0        456777888888888889865 6666555432110 00   


Q ss_pred             EEecCCCeeEEccccceEEEEEcCCCCeEEEeeecCCCcEEEEe
Q 042146          215 TFSVTNGKYIVSHRDPVISVASHPAKNIIASGALDNDRTMKIWT  258 (262)
Q Consensus       215 ~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~d~d~~i~iw~  258 (262)
                               +...-.....|+|.|+|++.++ +  +.+.++.+.
T Consensus       219 ---------l~~~~~qpEGia~d~~G~lyIv-s--E~n~~y~f~  250 (255)
T 3qqz_A          219 ---------LSHNIKQAEGVAMDASGNIYIV-S--EPNRFYRFT  250 (255)
T ss_dssp             ---------CSSCCCSEEEEEECTTCCEEEE-E--TTTEEEEEE
T ss_pred             ---------cccccCCCCeeEECCCCCEEEE-c--CCceEEEEE
Confidence                     0000135689999999986666 5  666555543

>1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1

Probab=98.56  E-value=9.3e-05  Score=55.21  Aligned_cols=115  Identities=8%  Similarity=0.017  Sum_probs=69.0

Q ss_pred             CceEEEEEccCCCeEE-EecCCCeEEEeecCCCCCCCCCCCCCCccccCCccccccceeEEEEecCCCccceecccCCcc
Q 042146           24 RAVSYVKFSHDGRLLT-SSSAEKTLLTYSLSSISNFDSTPPSPLQKFTGHEQGISDLATIRLWDVPTATSLKTLIGHTNY  102 (262)
Q Consensus        24 ~~v~~~~~~~~~~~l~-s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~i~v~d~~~~~~~~~~~~~~~~  102 (262)
                      ..+..+++++++..|+ +-...+.|..++.+.                                   .............
T Consensus        36 ~~~~gi~~d~~~~~ly~~d~~~~~I~~~~~~g-----------------------------------~~~~~~~~~~~~~   80 (267)
T 1npe_A           36 KVIIGLAFDCVDKVVYWTDISEPSIGRASLHG-----------------------------------GEPTTIIRQDLGS   80 (267)
T ss_dssp             EEEEEEEEETTTTEEEEEETTTTEEEEEESSS-----------------------------------CCCEEEECTTCCC
T ss_pred             CcEEEEEEecCCCEEEEEECCCCEEEEEecCC-----------------------------------CCcEEEEECCCCC
Confidence            3467899998655444 445567777776532                                   1111111112245


Q ss_pred             eEEEEEeCCCCEE-EeecCCCeEEEEECCCCeeeeeeecCCCCeeeEEEccCCCEEEEEeC---CCeEEEEeCCC
Q 042146          103 VFCINFNPQSNRI-VSDTFNETIRIWDIKTGKCLKVLPAHSDPVTAIDFNRDGTMIVTSSY---DGLYRILDAST  173 (262)
Q Consensus       103 v~~~~~~~~~~~l-~~~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~---dg~i~~~d~~~  173 (262)
                      ...++++|++..+ ++-...+.|.++++..................++++|++..|+.+..   .+.|..+++..
T Consensus        81 p~~ia~d~~~~~lyv~d~~~~~I~~~~~~g~~~~~~~~~~~~~P~~i~vd~~~g~lyv~~~~~~~~~I~~~~~dg  155 (267)
T 1npe_A           81 PEGIALDHLGRTIFWTDSQLDRIEVAKMDGTQRRVLFDTGLVNPRGIVTDPVRGNLYWTDWNRDNPKIETSHMDG  155 (267)
T ss_dssp             EEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSSEEEEEEETTTTEEEEEECCSSSCEEEEEETTS
T ss_pred             ccEEEEEecCCeEEEEECCCCEEEEEEcCCCCEEEEEECCCCCccEEEEeeCCCEEEEEECCCCCcEEEEEecCC
Confidence            6889999975554 45556789999998643322222222245689999996665555543   36788777643

>1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1

Probab=98.52  E-value=8.3e-05  Score=55.48  Aligned_cols=73  Identities=12%  Similarity=0.146  Sum_probs=50.1

Q ss_pred             cceEEEEEeCCCCEE-EeecCCCeEEEEECCCCeeeeeeecCCCCeeeEEEccCCCEEE-EEeCCCeEEEEeCCC
Q 042146          101 NYVFCINFNPQSNRI-VSDTFNETIRIWDIKTGKCLKVLPAHSDPVTAIDFNRDGTMIV-TSSYDGLYRILDAST  173 (262)
Q Consensus       101 ~~v~~~~~~~~~~~l-~~~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~-~~~~dg~i~~~d~~~  173 (262)
                      ..+..++++|++..| ++-...+.|..+++........+.........++++|++..|+ +....+.|.++++..
T Consensus        36 ~~~~gi~~d~~~~~ly~~d~~~~~I~~~~~~g~~~~~~~~~~~~~p~~ia~d~~~~~lyv~d~~~~~I~~~~~~g  110 (267)
T 1npe_A           36 KVIIGLAFDCVDKVVYWTDISEPSIGRASLHGGEPTTIIRQDLGSPEGIALDHLGRTIFWTDSQLDRIEVAKMDG  110 (267)
T ss_dssp             EEEEEEEEETTTTEEEEEETTTTEEEEEESSSCCCEEEECTTCCCEEEEEEETTTTEEEEEETTTTEEEEEETTS
T ss_pred             CcEEEEEEecCCCEEEEEECCCCEEEEEecCCCCcEEEEECCCCCccEEEEEecCCeEEEEECCCCEEEEEEcCC
Confidence            357799999966555 4555678999999876554333332234678999999765554 445677899888754

>2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A*

Probab=98.49  E-value=3.7e-05  Score=57.11  Aligned_cols=137  Identities=12%  Similarity=0.067  Sum_probs=89.9

Q ss_pred             ceEEEEEeCCCCEEEeecC--CCeEEEEECCCCeeeeeeecCCC-CeeeEEEccCCCEEEEE-eCCCeEEEEeCCC----
Q 042146          102 YVFCINFNPQSNRIVSDTF--NETIRIWDIKTGKCLKVLPAHSD-PVTAIDFNRDGTMIVTS-SYDGLYRILDAST----  173 (262)
Q Consensus       102 ~v~~~~~~~~~~~l~~~~~--dg~i~vwd~~~~~~~~~~~~~~~-~v~~~~~~~~~~~l~~~-~~dg~i~~~d~~~----  173 (262)
                      ....+.|+|++.++++.+.  ++.|.++|+.+++.+..+..... ....+++.  ++.|+.+ -.++.+.++|..+    
T Consensus        22 f~~Gl~~~~dg~Lyvstg~~~~s~v~~iD~~tg~v~~~i~l~~~~fgeGi~~~--g~~lyv~t~~~~~v~viD~~t~~v~   99 (266)
T 2iwa_A           22 FTQGLVYAENDTLFESTGLYGRSSVRQVALQTGKVENIHKMDDSYFGEGLTLL--NEKLYQVVWLKNIGFIYDRRTLSNI   99 (266)
T ss_dssp             CEEEEEECSTTEEEEEECSTTTCEEEEEETTTCCEEEEEECCTTCCEEEEEEE--TTEEEEEETTCSEEEEEETTTTEEE
T ss_pred             CcccEEEeCCCeEEEECCCCCCCEEEEEECCCCCEEEEEecCCCcceEEEEEe--CCEEEEEEecCCEEEEEECCCCcEE
Confidence            3578999998655554432  57999999999998888753222 22344544  5455444 4688999999876    


Q ss_pred             --------------CCccEEEEEcCCCeEEEEecCCCceeeEEeccCCceeEEEEEEecCCCeeEEccccceEEEEEcCC
Q 042146          174 --------------PNGKFILVGTLDNTLRLWNYSTRKILKTYSGYTNSKYCISSTFSVTNGKYIVSHRDPVISVASHPA  239 (262)
Q Consensus       174 --------------~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~  239 (262)
                                    ++++.++++..++.|.++|..+.+.+..+.......                 .-..++.+.|. +
T Consensus       100 ~~i~~g~~~g~glt~Dg~~l~vs~gs~~l~viD~~t~~v~~~I~Vg~~~~-----------------p~~~~nele~~-d  161 (266)
T 2iwa_A          100 KNFTHQMKDGWGLATDGKILYGSDGTSILYEIDPHTFKLIKKHNVKYNGH-----------------RVIRLNELEYI-N  161 (266)
T ss_dssp             EEEECCSSSCCEEEECSSSEEEECSSSEEEEECTTTCCEEEEEECEETTE-----------------ECCCEEEEEEE-T
T ss_pred             EEEECCCCCeEEEEECCCEEEEECCCCeEEEEECCCCcEEEEEEECCCCc-----------------ccccceeEEEE-C
Confidence                          456777777778899999999988888876421100                 11135566666 5


Q ss_pred             CCeEEEeeecCCCcEEEEeec
Q 042146          240 KNIIASGALDNDRTMKIWTQE  260 (262)
Q Consensus       240 ~~~l~~~~~d~d~~i~iw~~~  260 (262)
                      +.+.+...  .++.|.+-|+.
T Consensus       162 g~lyvn~~--~~~~V~vID~~  180 (266)
T 2iwa_A          162 GEVWANIW--QTDCIARISAK  180 (266)
T ss_dssp             TEEEEEET--TSSEEEEEETT
T ss_pred             CEEEEecC--CCCeEEEEECC
Confidence            54444433  45677776654

>2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A*

Probab=98.48  E-value=9.8e-05  Score=56.75  Aligned_cols=71  Identities=7%  Similarity=0.081  Sum_probs=49.4

Q ss_pred             ceEEEEEeC-CCCEEEeecC-----------------CCeEEEEECCCCeeeeeeecCCCCeeeEEEccCCCEEEEE-eC
Q 042146          102 YVFCINFNP-QSNRIVSDTF-----------------NETIRIWDIKTGKCLKVLPAHSDPVTAIDFNRDGTMIVTS-SY  162 (262)
Q Consensus       102 ~v~~~~~~~-~~~~l~~~~~-----------------dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~~  162 (262)
                      ..+.+++.| +|++.++-..                 ++.|..+|..+++....... ......++++|+++.|+.+ ..
T Consensus       127 ~p~~i~~d~~~G~l~v~d~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~~~~~~~~~-~~~p~gia~~~dg~~lyv~d~~  205 (322)
T 2fp8_A          127 WLYAVTVDQRTGIVYFTDVSTLYDDRGVQQIMDTSDKTGRLIKYDPSTKETTLLLKE-LHVPGGAEVSADSSFVLVAEFL  205 (322)
T ss_dssp             CEEEEEECTTTCCEEEEESCSSCCTTCHHHHHHHTCCCEEEEEEETTTTEEEEEEEE-ESCCCEEEECTTSSEEEEEEGG
T ss_pred             ccceEEEecCCCEEEEECCcccccccccceehcccCCCceEEEEeCCCCEEEEeccC-CccCcceEECCCCCEEEEEeCC
Confidence            467899999 8887766432                 36799999877664332222 2334679999999866655 56


Q ss_pred             CCeEEEEeCCC
Q 042146          163 DGLYRILDAST  173 (262)
Q Consensus       163 dg~i~~~d~~~  173 (262)
                      .+.|..|++..
T Consensus       206 ~~~I~~~~~~~  216 (322)
T 2fp8_A          206 SHQIVKYWLEG  216 (322)
T ss_dssp             GTEEEEEESSS
T ss_pred             CCeEEEEECCC
Confidence            68899998763

>3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus}

Probab=98.47  E-value=2.2e-05  Score=57.82  Aligned_cols=100  Identities=11%  Similarity=0.067  Sum_probs=74.1

Q ss_pred             ceEEEEEeCCCCEEEeecCCCeEEEEECCCCeeeeeeecCCCCeeeEEEccCCCEE-EEEeCCCeEEEEeCCC-------
Q 042146          102 YVFCINFNPQSNRIVSDTFNETIRIWDIKTGKCLKVLPAHSDPVTAIDFNRDGTMI-VTSSYDGLYRILDAST-------  173 (262)
Q Consensus       102 ~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l-~~~~~dg~i~~~d~~~-------  173 (262)
                      -...+.|+ ++.+..+.+.+|.|+++|+++++.+..+ .. ......-..++++.| +..-.++.+.+||..+       
T Consensus        56 ftqGL~~~-~~~Ly~stG~~g~v~~iD~~Tgkv~~~~-l~-~~~FgeGit~~g~~Ly~ltw~~~~v~V~D~~Tl~~~~ti  132 (268)
T 3nok_A           56 FTQGLVFH-QGHFFESTGHQGTLRQLSLESAQPVWME-RL-GNIFAEGLASDGERLYQLTWTEGLLFTWSGMPPQRERTT  132 (268)
T ss_dssp             CEEEEEEE-TTEEEEEETTTTEEEECCSSCSSCSEEE-EC-TTCCEEEEEECSSCEEEEESSSCEEEEEETTTTEEEEEE
T ss_pred             ccceEEEE-CCEEEEEcCCCCEEEEEECCCCcEEeEE-CC-CCcceeEEEEeCCEEEEEEccCCEEEEEECCcCcEEEEE
Confidence            35788887 4566778888899999999999988877 32 233332223334444 4445789999999876       


Q ss_pred             ----------CCccEEEEEcCCCeEEEEecCCCceeeEEec
Q 042146          174 ----------PNGKFILVGTLDNTLRLWNYSTRKILKTYSG  204 (262)
Q Consensus       174 ----------~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~  204 (262)
                                ++++.|+.+..++.|.++|..+.+.+..+..
T Consensus       133 ~~~~eGwGLt~Dg~~L~vSdGs~~l~~iDp~T~~v~~~I~V  173 (268)
T 3nok_A          133 RYSGEGWGLCYWNGKLVRSDGGTMLTFHEPDGFALVGAVQV  173 (268)
T ss_dssp             ECSSCCCCEEEETTEEEEECSSSEEEEECTTTCCEEEEEEC
T ss_pred             eCCCceeEEecCCCEEEEECCCCEEEEEcCCCCeEEEEEEe
Confidence                      5677788877889999999999999888764

>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A

Probab=98.46  E-value=2.6e-05  Score=57.40  Aligned_cols=101  Identities=17%  Similarity=0.187  Sum_probs=75.4

Q ss_pred             ceEEEEEeCCCCEEEeecCCC--eEEEEECCCCeeeeeeecCCCCeeeEEEccCCCEEEEEe-CCCeEEEEeCCC-----
Q 042146          102 YVFCINFNPQSNRIVSDTFNE--TIRIWDIKTGKCLKVLPAHSDPVTAIDFNRDGTMIVTSS-YDGLYRILDAST-----  173 (262)
Q Consensus       102 ~v~~~~~~~~~~~l~~~~~dg--~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~dg~i~~~d~~~-----  173 (262)
                      -...+.|+ ++.++.+.+.+|  .|+++|+++++.+..+... ......-..++++.|+... .++.+.+||..+     
T Consensus        44 ftqGL~~~-~~~LyestG~~g~S~v~~vD~~Tgkv~~~~~l~-~~~FgeGit~~g~~ly~ltw~~~~v~v~D~~t~~~~~  121 (262)
T 3nol_A           44 FTEGFFYR-NGYFYESTGLNGRSSIRKVDIESGKTLQQIELG-KRYFGEGISDWKDKIVGLTWKNGLGFVWNIRNLRQVR  121 (262)
T ss_dssp             EEEEEEEE-TTEEEEEEEETTEEEEEEECTTTCCEEEEEECC-TTCCEEEEEEETTEEEEEESSSSEEEEEETTTCCEEE
T ss_pred             ccceEEEE-CCEEEEECCCCCCceEEEEECCCCcEEEEEecC-CccceeEEEEeCCEEEEEEeeCCEEEEEECccCcEEE
Confidence            35788898 666666776666  8999999999998887643 3333333344455555554 688999999876     


Q ss_pred             ------------CCccEEEEEcCCCeEEEEecCCCceeeEEec
Q 042146          174 ------------PNGKFILVGTLDNTLRLWNYSTRKILKTYSG  204 (262)
Q Consensus       174 ------------~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~  204 (262)
                                  ++++.|+.+..++.|.++|..+.+.+..+..
T Consensus       122 ti~~~~eG~glt~dg~~L~~SdGs~~i~~iDp~T~~v~~~I~V  164 (262)
T 3nol_A          122 SFNYDGEGWGLTHNDQYLIMSDGTPVLRFLDPESLTPVRTITV  164 (262)
T ss_dssp             EEECSSCCCCEEECSSCEEECCSSSEEEEECTTTCSEEEEEEC
T ss_pred             EEECCCCceEEecCCCEEEEECCCCeEEEEcCCCCeEEEEEEe
Confidence                        5677777777788999999999998888765

>1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1

Probab=98.44  E-value=2.2e-05  Score=66.64  Aligned_cols=139  Identities=16%  Similarity=0.223  Sum_probs=84.6

Q ss_pred             CCeEEEecCCCeEEEeecCCCCCC-C--CCCCCCCccccC----Ccccc---------ccceeEEEEecCCCccceeccc
Q 042146           35 GRLLTSSSAEKTLLTYSLSSISNF-D--STPPSPLQKFTG----HEQGI---------SDLATIRLWDVPTATSLKTLIG   98 (262)
Q Consensus        35 ~~~l~s~~~d~~i~iw~~~~~~~~-~--~~~~~~~~~~~~----~~~~v---------~~~~~i~v~d~~~~~~~~~~~~   98 (262)
                      +..++.++.|+.|..+|..+.+.. .  ............    ....+         ...+.|..+|..+++.+..+..
T Consensus       117 ~~~v~v~~~dg~l~alD~~tG~~~W~~~~~~~~~~~~~~~~P~v~~~~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~~~  196 (668)
T 1kv9_A          117 GDKVYVGTLDGRLIALDAKTGKAIWSQQTTDPAKPYSITGAPRVVKGKVIIGNGGAEYGVRGFVSAYDADTGKLAWRFYT  196 (668)
T ss_dssp             BTEEEEECTTSEEEEEETTTCCEEEEEECSCTTSSCBCCSCCEEETTEEEECCBCTTTCCBCEEEEEETTTCCEEEEEES
T ss_pred             CCEEEEEcCCCEEEEEECCCCCEeeeeccCCCCCcceecCCCEEECCEEEEeCCCCCcCCCCEEEEEECCCCcEEEEecc
Confidence            456788888999999998765321 0  100000000000    01111         0124799999999988776542


Q ss_pred             C---C----------------------------cceEEEEEeCCCCEEEeecCCC-------------------eEEEEE
Q 042146           99 H---T----------------------------NYVFCINFNPQSNRIVSDTFNE-------------------TIRIWD  128 (262)
Q Consensus        99 ~---~----------------------------~~v~~~~~~~~~~~l~~~~~dg-------------------~i~vwd  128 (262)
                      .   .                            .....++++|+..+++.++.++                   .|..+|
T Consensus       197 ~~~~p~~~~~~~~~~~~~~~~~g~~~w~~~~gg~~w~~~a~d~~~~~vy~~~~~g~~w~~~~~~~~~gd~l~~~~v~AlD  276 (668)
T 1kv9_A          197 VPGDPALPYEHPELREAAKTWQGDQYWKLGGGGTVWDSMAYDPELDLLYVGTGNGSPWNREVRSPGGGDNLYLSSILAIR  276 (668)
T ss_dssp             SCCCTTSCCSSHHHHHHHTTCCSSCHHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHSTTCCCCTTTTEEEEEC
T ss_pred             cCCCCCccccccccccccccCCccceeeeCCCCccccceEEcCCCCEEEEeCCCCCccccCCCCCCCCCceeeeeEEEEc
Confidence            1   0                            0112468888888888887766                   399999


Q ss_pred             CCCCeeeeeeec--CC-------CCeeeEEEccCCC---EEEEEeCCCeEEEEeCCC
Q 042146          129 IKTGKCLKVLPA--HS-------DPVTAIDFNRDGT---MIVTSSYDGLYRILDAST  173 (262)
Q Consensus       129 ~~~~~~~~~~~~--~~-------~~v~~~~~~~~~~---~l~~~~~dg~i~~~d~~~  173 (262)
                      +++++.+..++.  |.       .+.....+..+|+   .++.++.+|.++++|..+
T Consensus       277 ~~tG~~~W~~~~~~~~~wd~~~~~~~~~~d~~~~G~~~~~v~~~~~~G~l~~lD~~t  333 (668)
T 1kv9_A          277 PDTGKLAWHYQVTPGDSWDFTATQQITLAELNIDGKPRKVLMQAPKNGFFYVLDRTN  333 (668)
T ss_dssp             TTTCCEEEEEESSTTCCSCCCCCSCEEEEEEEETTEEEEEEEECCTTSEEEEEETTT
T ss_pred             CCCCceeeEeecCCCccccccCCCCcEEEEeccCCcEEEEEEEECCCCEEEEEECCC
Confidence            999999888764  22       2222223333564   688888899998888654

>2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A*

Probab=98.43  E-value=0.00011  Score=56.55  Aligned_cols=145  Identities=13%  Similarity=0.156  Sum_probs=85.5

Q ss_pred             CceEEEEEccCCCeEEEecCCCeEEEeecCCCCCCCCCCCCCCccccCCccccccceeEEEEecCCC---------ccce
Q 042146           24 RAVSYVKFSHDGRLLTSSSAEKTLLTYSLSSISNFDSTPPSPLQKFTGHEQGISDLATIRLWDVPTA---------TSLK   94 (262)
Q Consensus        24 ~~v~~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~i~v~d~~~~---------~~~~   94 (262)
                      ....++++.++++++.++..++.|..|+.....                         +..|.....         ....
T Consensus        19 ~~p~~i~~d~~g~~l~v~~~~~~i~~~~~~~~~-------------------------~~~~~~~~~~~~~~~~~g~~~~   73 (322)
T 2fp8_A           19 YAPNSFTFDSTNKGFYTSVQDGRVIKYEGPNSG-------------------------FVDFAYASPYWNKAFCENSTDA   73 (322)
T ss_dssp             SCCCCEECCTTCSSEEEECTTSEEEEECCTTTC-------------------------EEEEEESCTTCCHHHHTTCCCG
T ss_pred             CCceEEEEcCCCCEEEEEcCCCeEEEECCCCCc-------------------------eEEEecccccccccccccccch
Confidence            345678899999978888888999888654311                         112211100         0000


Q ss_pred             ecccCCcceEEEEEeC-CCCEEEeecCCCeEEEEECCCCeeeeeeec-----CCCCeeeEEEcc-CCCEEEEEeC-----
Q 042146           95 TLIGHTNYVFCINFNP-QSNRIVSDTFNETIRIWDIKTGKCLKVLPA-----HSDPVTAIDFNR-DGTMIVTSSY-----  162 (262)
Q Consensus        95 ~~~~~~~~v~~~~~~~-~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~-----~~~~v~~~~~~~-~~~~l~~~~~-----  162 (262)
                      ...........+++.+ +++++++ ...+.|..+|..+++. ..+..     .......+++.+ +|++.++-..     
T Consensus        74 ~~~~~~~~p~gi~~~~~~g~l~v~-d~~~~i~~~d~~~g~~-~~~~~~~~~~~~~~p~~i~~d~~~G~l~v~d~~~~~~~  151 (322)
T 2fp8_A           74 EKRPLCGRTYDISYNLQNNQLYIV-DCYYHLSVVGSEGGHA-TQLATSVDGVPFKWLYAVTVDQRTGIVYFTDVSTLYDD  151 (322)
T ss_dssp             GGHHHHCCEEEEEEETTTTEEEEE-ETTTEEEEECTTCEEC-EEEESEETTEECSCEEEEEECTTTCCEEEEESCSSCCT
T ss_pred             hccccCCCCceEEEcCCCCcEEEE-ECCCCEEEEeCCCCEE-EEecccCCCCcccccceEEEecCCCEEEEECCcccccc
Confidence            0001123478899998 5655444 3345588888775542 22211     113468899999 8987666432     


Q ss_pred             ------------CCeEEEEeCCC-------------------CCccEEEEE-cCCCeEEEEecCC
Q 042146          163 ------------DGLYRILDAST-------------------PNGKFILVG-TLDNTLRLWNYST  195 (262)
Q Consensus       163 ------------dg~i~~~d~~~-------------------~~~~~l~~~-~~dg~i~i~d~~~  195 (262)
                                  ++.|..||...                   ++++.|+.+ +..+.|.+|++..
T Consensus       152 ~~~~~~~~~~~~~g~v~~~d~~~~~~~~~~~~~~~p~gia~~~dg~~lyv~d~~~~~I~~~~~~~  216 (322)
T 2fp8_A          152 RGVQQIMDTSDKTGRLIKYDPSTKETTLLLKELHVPGGAEVSADSSFVLVAEFLSHQIVKYWLEG  216 (322)
T ss_dssp             TCHHHHHHHTCCCEEEEEEETTTTEEEEEEEEESCCCEEEECTTSSEEEEEEGGGTEEEEEESSS
T ss_pred             cccceehcccCCCceEEEEeCCCCEEEEeccCCccCcceEECCCCCEEEEEeCCCCeEEEEECCC
Confidence                        36788888642                   556644444 5567888888764

>3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron}

Probab=98.40  E-value=0.00025  Score=56.84  Aligned_cols=70  Identities=11%  Similarity=0.035  Sum_probs=49.2

Q ss_pred             eEEEEEeC-CCCEEEeecCCCeEEEEECCCCeeeeeeec-CCCCeeeEEEccCCCEEEE-EeCCCeEEEEeCC
Q 042146          103 VFCINFNP-QSNRIVSDTFNETIRIWDIKTGKCLKVLPA-HSDPVTAIDFNRDGTMIVT-SSYDGLYRILDAS  172 (262)
Q Consensus       103 v~~~~~~~-~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~-~~~dg~i~~~d~~  172 (262)
                      ...++++| ++.++++-..++.|..++...+........ .......++|+|++++|+. -...+.|..++..
T Consensus       228 p~giavdp~~g~lyv~d~~~~~V~~~~~~~~~~~~~~~~~~~~~P~gia~~pdG~~lyv~d~~~~~I~~~~~d  300 (430)
T 3tc9_A          228 CNGAETHPINGELYFNSWNAGQVFRYDFTTQETTPLFTIQDSGWEFHIQFHPSGNYAYIVVVNQHYILRSDYD  300 (430)
T ss_dssp             CCCEEECTTTCCEEEEETTTTEEEEEETTTTEEEEEEECSSSSCCEEEEECTTSSEEEEEETTTTEEEEEEEE
T ss_pred             ceEEEEeCCCCEEEEEECCCCEEEEEECCCCcEEEEEEcCCCCcceeEEEcCCCCEEEEEECCCCEEEEEeCC
Confidence            45788999 777777777788999999886654222221 1234578999999995544 4567889887754

>2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major}

Probab=98.38  E-value=4.1e-05  Score=65.95  Aligned_cols=71  Identities=10%  Similarity=-0.001  Sum_probs=47.5

Q ss_pred             EEEEEeCCCCEEEeecCC-----CeEEEEECCCCee--eeeee-cCCCCeeeEEEccCCCEEEEEeC---CCeEEEEeCC
Q 042146          104 FCINFNPQSNRIVSDTFN-----ETIRIWDIKTGKC--LKVLP-AHSDPVTAIDFNRDGTMIVTSSY---DGLYRILDAS  172 (262)
Q Consensus       104 ~~~~~~~~~~~l~~~~~d-----g~i~vwd~~~~~~--~~~~~-~~~~~v~~~~~~~~~~~l~~~~~---dg~i~~~d~~  172 (262)
                      ..++|+||++.|+....+     ..|.++++.+++.  ...+. ........+.|+|||++|+..+.   ...|.++|+.
T Consensus       224 ~~~~WspDg~~l~y~~~d~~~~~~~v~~~~lgt~~~~~~lv~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~l~~~d~~  303 (751)
T 2xe4_A          224 GEIVWGPDHTSLFYVTKDETLRENKVWRHVMGKLQSEDVCLYEEHNPLFSAFMYKAADTNTLCIGSQSPETAEVHLLDLR  303 (751)
T ss_dssp             SCCEECSSTTEEEEEEECTTCCEEEEEEEETTSCGGGCEEEEECCCTTCEEEEEECTTSSEEEEEEECSSCEEEEEEESS
T ss_pred             eeEEEecCCCEEEEEEECCCCCCCEEEEEECCCCchhcEEEEecCCCceEEEEEECCCCCEEEEEecCCCCceEEEEECC
Confidence            467899999887766554     3688888876542  22222 22334678899999998877653   3467778876


Q ss_pred             CC
Q 042146          173 TP  174 (262)
Q Consensus       173 ~~  174 (262)
                      .+
T Consensus       304 ~~  305 (751)
T 2xe4_A          304 KG  305 (751)
T ss_dssp             SC
T ss_pred             CC
Confidence            54

>2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3

Probab=98.35  E-value=0.00041  Score=52.87  Aligned_cols=123  Identities=11%  Similarity=0.111  Sum_probs=73.2

Q ss_pred             ccccceecccCcCceEEEEEccCCCeEEEecCCCeEEEeecCCCCCCCCCCCCCCccccCCccccccceeEEEEecCCCc
Q 042146           12 PYTLTQTLNGHLRAVSYVKFSHDGRLLTSSSAEKTLLTYSLSSISNFDSTPPSPLQKFTGHEQGISDLATIRLWDVPTAT   91 (262)
Q Consensus        12 ~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~i~v~d~~~~~   91 (262)
                      +.+.+..+... .....++|+++++++++-..++.|..||.+..                         ...++.     
T Consensus        21 ~~~~~~~~p~~-~~pegia~~~~g~lyv~d~~~~~I~~~d~~g~-------------------------~~~~~~-----   69 (306)
T 2p4o_A           21 PAKIITSFPVN-TFLENLASAPDGTIFVTNHEVGEIVSITPDGN-------------------------QQIHAT-----   69 (306)
T ss_dssp             CEEEEEEECTT-CCEEEEEECTTSCEEEEETTTTEEEEECTTCC-------------------------EEEEEE-----
T ss_pred             CceEeEeCCCC-CCcceEEECCCCCEEEEeCCCCeEEEECCCCc-------------------------eEEEEe-----
Confidence            34445555432 45778999999997777767888887754320                         011121     


Q ss_pred             cceecccCCcceEEEEEeCCCCEEEeecCC--CeEEEEECCCCeeeeeeec-CCCCeeeEEEccCCCEEEEEeCCCeEEE
Q 042146           92 SLKTLIGHTNYVFCINFNPQSNRIVSDTFN--ETIRIWDIKTGKCLKVLPA-HSDPVTAIDFNRDGTMIVTSSYDGLYRI  168 (262)
Q Consensus        92 ~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d--g~i~vwd~~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~~~dg~i~~  168 (262)
                             .......+++.++++++++....  ..|..+|..+++....... .......++..+++..+++-..++.|..
T Consensus        70 -------~~~~p~gia~~~dG~l~vad~~~~~~~v~~~d~~~g~~~~~~~~~~~~~~~g~~~~~~~~~~v~d~~~g~i~~  142 (306)
T 2p4o_A           70 -------VEGKVSGLAFTSNGDLVATGWNADSIPVVSLVKSDGTVETLLTLPDAIFLNGITPLSDTQYLTADSYRGAIWL  142 (306)
T ss_dssp             -------CSSEEEEEEECTTSCEEEEEECTTSCEEEEEECTTSCEEEEEECTTCSCEEEEEESSSSEEEEEETTTTEEEE
T ss_pred             -------CCCCceeEEEcCCCcEEEEeccCCcceEEEEcCCCCeEEEEEeCCCccccCcccccCCCcEEEEECCCCeEEE
Confidence                   12357889999999976665432  3577778777765433221 1223345555555544444445788888


Q ss_pred             EeCC
Q 042146          169 LDAS  172 (262)
Q Consensus       169 ~d~~  172 (262)
                      +|..
T Consensus       143 ~d~~  146 (306)
T 2p4o_A          143 IDVV  146 (306)
T ss_dssp             EETT
T ss_pred             EeCC
Confidence            8754

>3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris}

Probab=98.34  E-value=0.00017  Score=52.62  Aligned_cols=102  Identities=10%  Similarity=0.046  Sum_probs=74.1

Q ss_pred             cceEEEEEeCCCCEEEeecCCC--eEEEEECCCCeeeeeeecCCCCeeeEEEccCCCEEEE-EeCCCeEEEEeCCC----
Q 042146          101 NYVFCINFNPQSNRIVSDTFNE--TIRIWDIKTGKCLKVLPAHSDPVTAIDFNRDGTMIVT-SSYDGLYRILDAST----  173 (262)
Q Consensus       101 ~~v~~~~~~~~~~~l~~~~~dg--~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~-~~~dg~i~~~d~~~----  173 (262)
                      .-...+.|++ +.++.+.+.+|  .|+.+|+.+++.+..+..... .......+.++.|+. .-.++.+.+||..+    
T Consensus        21 ~ftqGL~~~~-~~LyestG~~g~S~v~~vD~~tgkv~~~~~l~~~-~fgeGi~~~~~~ly~ltw~~~~v~v~D~~tl~~~   98 (243)
T 3mbr_X           21 AFTEGLFYLR-GHLYESTGETGRSSVRKVDLETGRILQRAEVPPP-YFGAGIVAWRDRLIQLTWRNHEGFVYDLATLTPR   98 (243)
T ss_dssp             CCEEEEEEET-TEEEEEECCTTSCEEEEEETTTCCEEEEEECCTT-CCEEEEEEETTEEEEEESSSSEEEEEETTTTEEE
T ss_pred             cccccEEEEC-CEEEEECCCCCCceEEEEECCCCCEEEEEeCCCC-cceeEEEEeCCEEEEEEeeCCEEEEEECCcCcEE
Confidence            4477899986 55566666654  899999999999888764332 233333333444444 45789999999876    


Q ss_pred             -------------CCccEEEEEcCCCeEEEEecCCCceeeEEec
Q 042146          174 -------------PNGKFILVGTLDNTLRLWNYSTRKILKTYSG  204 (262)
Q Consensus       174 -------------~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~  204 (262)
                                   +++..|+++..++.|.++|..+.+.+..+..
T Consensus        99 ~ti~~~~~Gwglt~dg~~L~vSdgs~~l~~iDp~t~~~~~~I~V  142 (243)
T 3mbr_X           99 ARFRYPGEGWALTSDDSHLYMSDGTAVIRKLDPDTLQQVGSIKV  142 (243)
T ss_dssp             EEEECSSCCCEEEECSSCEEEECSSSEEEEECTTTCCEEEEEEC
T ss_pred             EEEeCCCCceEEeeCCCEEEEECCCCeEEEEeCCCCeEEEEEEE
Confidence                         5677777777789999999999998888865

>4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus}

Probab=98.33  E-value=0.00037  Score=55.92  Aligned_cols=70  Identities=11%  Similarity=0.030  Sum_probs=47.9

Q ss_pred             eEEEEEeC-CCCEEEeecCCCeEEEEECCCCeeeeee-ecC-CCCeeeEEEccCCCEEEEE-eCCCeEEEEeCC
Q 042146          103 VFCINFNP-QSNRIVSDTFNETIRIWDIKTGKCLKVL-PAH-SDPVTAIDFNRDGTMIVTS-SYDGLYRILDAS  172 (262)
Q Consensus       103 v~~~~~~~-~~~~l~~~~~dg~i~vwd~~~~~~~~~~-~~~-~~~v~~~~~~~~~~~l~~~-~~dg~i~~~d~~  172 (262)
                      ...++++| ++.+.++-..++.|+.+|..++.....+ ... ...-..++|+|+++.|+.+ ...+.|..++..
T Consensus       230 P~giavd~~~G~lyv~d~~~~~V~~~d~~~g~~~~~~~~~~~~~~~~~ia~dpdG~~LYvad~~~~~I~~~~~d  303 (433)
T 4hw6_A          230 AKTCAVHPQNGKIYYTRYHHAMISSYDPATGTLTEEEVMMDTKGSNFHIVWHPTGDWAYIIYNGKHCIYRVDYN  303 (433)
T ss_dssp             BCCCEECTTTCCEEECBTTCSEEEEECTTTCCEEEEEEECSCCSSCEEEEECTTSSEEEEEETTTTEEEEEEBC
T ss_pred             CCEEEEeCCCCeEEEEECCCCEEEEEECCCCeEEEEEeccCCCCCcccEEEeCCCCEEEEEeCCCCEEEEEeCC
Confidence            45688999 6776667667889999998877652222 211 1223469999999955555 456889997754

>1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1

Probab=98.32  E-value=0.00021  Score=60.73  Aligned_cols=162  Identities=14%  Similarity=0.184  Sum_probs=104.1

Q ss_pred             EEEEccCCCeEEEecCCCeEEEeecCCCCCCCCCCCCCCccccCCccccccceeEEEEecCCCccceeccc--CC-----
Q 042146           28 YVKFSHDGRLLTSSSAEKTLLTYSLSSISNFDSTPPSPLQKFTGHEQGISDLATIRLWDVPTATSLKTLIG--HT-----  100 (262)
Q Consensus        28 ~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~i~v~d~~~~~~~~~~~~--~~-----  100 (262)
                      .+++.|+...++.++.++..  |......      +       .....+ ....|..+|..+++.+..++.  |.     
T Consensus       234 ~~a~d~~~~~vy~~~~~g~~--w~~~~~~------~-------~~gd~l-~~~~v~AlD~~tG~~~W~~~~~~~~~wd~~  297 (668)
T 1kv9_A          234 SMAYDPELDLLYVGTGNGSP--WNREVRS------P-------GGGDNL-YLSSILAIRPDTGKLAWHYQVTPGDSWDFT  297 (668)
T ss_dssp             CEEEETTTTEEEEECCCEES--SCHHHHS------T-------TCCCCT-TTTEEEEECTTTCCEEEEEESSTTCCSCCC
T ss_pred             ceEEcCCCCEEEEeCCCCCc--cccCCCC------C-------CCCCce-eeeeEEEEcCCCCceeeEeecCCCcccccc
Confidence            46788888888888777642  4211000      0       000000 112578888888888776643  21     


Q ss_pred             --cceEEEEEeCCCC---EEEeecCCCeEEEEECCCCeeeeeeecCC------------CCe------------------
Q 042146          101 --NYVFCINFNPQSN---RIVSDTFNETIRIWDIKTGKCLKVLPAHS------------DPV------------------  145 (262)
Q Consensus       101 --~~v~~~~~~~~~~---~l~~~~~dg~i~vwd~~~~~~~~~~~~~~------------~~v------------------  145 (262)
                        .+.....+..+++   .++.++.+|.++++|.++++.+...+...            .++                  
T Consensus       298 ~~~~~~~~d~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~l~~~~~~~~~w~~~~d~~~g~p~~~~~~~~~~~~~~~~p~~  377 (668)
T 1kv9_A          298 ATQQITLAELNIDGKPRKVLMQAPKNGFFYVLDRTNGKLISAEKFGKVTWAEKVDLATGRPVEAPGVRYEKEPIVMWPSP  377 (668)
T ss_dssp             CCSCEEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEEEESSCCCSEEEECTTTCCEEECTTTTCSSSCEEESSCT
T ss_pred             CCCCcEEEEeccCCcEEEEEEEECCCCEEEEEECCCCCEeccccccccccccccccccCCccccccccccCCeeEECCCC
Confidence              2233333334665   68899999999999999998874432211            000                  


Q ss_pred             ------eeEEEccCCCEEEEEe------------------------------------CCCeEEEEeCCC----------
Q 042146          146 ------TAIDFNRDGTMIVTSS------------------------------------YDGLYRILDAST----------  173 (262)
Q Consensus       146 ------~~~~~~~~~~~l~~~~------------------------------------~dg~i~~~d~~~----------  173 (262)
                            ..++++|+...++...                                    .+|.|..||+.+          
T Consensus       378 ~G~~~w~~~a~dp~~g~~yv~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~p~~~~~g~l~A~D~~tG~~~W~~~~~  457 (668)
T 1kv9_A          378 FGAHNWHSMSFNPGTGLVYIPYQEVPGVYRNEGKDFVTRKAFNTAAGFADATDVPAAVVSGALLAWDPVKQKAAWKVPYP  457 (668)
T ss_dssp             TCSSCSSCCEEETTTTEEEEEEEECCEEECCCGGGCCCCSSCCCSSCGGGCCCCCGGGCEEEEEEEETTTTEEEEEEEES
T ss_pred             ccccCCCcceECCCCCEEEEeccccceEeeeeccccccccccccCccccccCCCCCCCccceEEEEeCCCCcEEEEccCC
Confidence                  1267777766655421                                    247899999876          


Q ss_pred             ---------CCccEEEEEcCCCeEEEEecCCCceeeEEecc
Q 042146          174 ---------PNGKFILVGTLDNTLRLWNYSTRKILKTYSGY  205 (262)
Q Consensus       174 ---------~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~  205 (262)
                               ..+.++++++.||.++.||.++|+.+..++..
T Consensus       458 ~~~~~~~~~t~gg~vf~g~~dg~l~a~d~~tG~~l~~~~~~  498 (668)
T 1kv9_A          458 THWNGGTLSTAGNLVFQGTAAGQMHAYSADKGEALWQFEAQ  498 (668)
T ss_dssp             SSCCCCEEEETTTEEEEECTTSEEEEEETTTCCEEEEEECS
T ss_pred             CCCcCceeEeCCCEEEEECCcccchhhhhhcChhheEecCC
Confidence                     35678888999999999999999999888753

>2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3

Probab=98.31  E-value=0.00052  Score=52.30  Aligned_cols=121  Identities=12%  Similarity=0.023  Sum_probs=65.7

Q ss_pred             EEEEEeCCCCEEEeecCCCeEEEEECCCCee-eeeee---------cCCCCeeeEEEccCCCEEEEE-eCCCeEEEEeCC
Q 042146          104 FCINFNPQSNRIVSDTFNETIRIWDIKTGKC-LKVLP---------AHSDPVTAIDFNRDGTMIVTS-SYDGLYRILDAS  172 (262)
Q Consensus       104 ~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~-~~~~~---------~~~~~v~~~~~~~~~~~l~~~-~~dg~i~~~d~~  172 (262)
                      ..++..+++..+++-..++.|.++|..+++. +....         ..-.....+  +|+++.|+.+ ...+.|..|++.
T Consensus       120 ~g~~~~~~~~~~v~d~~~g~i~~~d~~~~~~~v~~~~~~~~~~~~~~~~~~pngi--s~dg~~lyv~d~~~~~I~~~~~~  197 (306)
T 2p4o_A          120 NGITPLSDTQYLTADSYRGAIWLIDVVQPSGSIWLEHPMLARSNSESVFPAANGL--KRFGNFLYVSNTEKMLLLRIPVD  197 (306)
T ss_dssp             EEEEESSSSEEEEEETTTTEEEEEETTTTEEEEEEECGGGSCSSTTCCSCSEEEE--EEETTEEEEEETTTTEEEEEEBC
T ss_pred             CcccccCCCcEEEEECCCCeEEEEeCCCCcEeEEEECCccccccccCCCCcCCCc--CcCCCEEEEEeCCCCEEEEEEeC
Confidence            3444455555555555688999999875421 11100         111234455  7888765554 467889999875


Q ss_pred             C----------------------CCccEEEEEcCCCeEEEEecCCCceeeEEeccCCceeEEEEEEecCCCeeEEccccc
Q 042146          173 T----------------------PNGKFILVGTLDNTLRLWNYSTRKILKTYSGYTNSKYCISSTFSVTNGKYIVSHRDP  230 (262)
Q Consensus       173 ~----------------------~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  230 (262)
                      .                      ++++++++....+.|.++|.. ++........                    ..-..
T Consensus       198 ~~g~~~~~~~~~~~~~P~gi~vd~dG~l~va~~~~~~V~~~~~~-G~~~~~~~~~--------------------~~~~~  256 (306)
T 2p4o_A          198 STDKPGEPEIFVEQTNIDDFAFDVEGNLYGATHIYNSVVRIAPD-RSTTIIAQAE--------------------QGVIG  256 (306)
T ss_dssp             TTSCBCCCEEEEESCCCSSEEEBTTCCEEEECBTTCCEEEECTT-CCEEEEECGG--------------------GTCTT
T ss_pred             CCCCCCccEEEeccCCCCCeEECCCCCEEEEeCCCCeEEEECCC-CCEEEEeecc--------------------cccCC
Confidence            2                      344444444444556666543 3332111100                    02245


Q ss_pred             eEEEEEc---CCCCeEEEee
Q 042146          231 VISVASH---PAKNIIASGA  247 (262)
Q Consensus       231 v~~~~~~---p~~~~l~~~~  247 (262)
                      .++++|.   |+++.|+.++
T Consensus       257 p~~~a~~g~~~d~~~LyVt~  276 (306)
T 2p4o_A          257 STAVAFGQTEGDCTAIYVVT  276 (306)
T ss_dssp             EEEEEECCSTTTTTEEEEEE
T ss_pred             ceEEEEecccCCCCEEEEEC
Confidence            7899998   8877666655

>2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A*

Probab=98.24  E-value=0.00017  Score=60.00  Aligned_cols=123  Identities=17%  Similarity=0.180  Sum_probs=87.2

Q ss_pred             eEEEEecCCCccceeccc--C--------CcceEEEEEeCCCC---EEEeecCCCeEEEEECCCCeeeeeeecCC-----
Q 042146           81 TIRLWDVPTATSLKTLIG--H--------TNYVFCINFNPQSN---RIVSDTFNETIRIWDIKTGKCLKVLPAHS-----  142 (262)
Q Consensus        81 ~i~v~d~~~~~~~~~~~~--~--------~~~v~~~~~~~~~~---~l~~~~~dg~i~vwd~~~~~~~~~~~~~~-----  142 (262)
                      .|..+|..+++.+..++.  |        ..++. +...++|+   .++.++.+|.+.++|.++++.+...+...     
T Consensus       273 ~v~Ald~~tG~~~W~~~~~~~d~~d~~~~~~p~l-~~~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~~w~~~~~~~~~w~  351 (571)
T 2ad6_A          273 TIWGRDLDTGMAKWGYQKTPHDEWDFAGVNQMVL-TDQPVNGKMTPLLSHIDRNGILYTLNRENGNLIVAEKVDPAVNVF  351 (571)
T ss_dssp             EEEEEETTTCCEEEEEESSTTCSSCCCCCCCCEE-EEEEETTEEEEEEEEECTTSEEEEEETTTCCEEEEEESSTTCCSE
T ss_pred             EEEEEecCCCcEEEEecCCCCcccccccCCCCEE-EecccCCcEEEEEEEeCCCcEEEEEECCCCCEEeeecccCCcccc
Confidence            588899999988776542  1        12221 22234674   57788999999999999999877654321     


Q ss_pred             --------CCe--------------------------eeEEEccCCCEEEEEe---------------------------
Q 042146          143 --------DPV--------------------------TAIDFNRDGTMIVTSS---------------------------  161 (262)
Q Consensus       143 --------~~v--------------------------~~~~~~~~~~~l~~~~---------------------------  161 (262)
                              .++                          ..++++|+..++++..                           
T Consensus       352 ~~~d~~~g~p~~~~~~~~~~~~~~~~~~P~~~Gg~~w~~~a~dp~~g~~yv~~~~~~~~~~~~~~~~~~g~~~~g~~~~~  431 (571)
T 2ad6_A          352 KKVDLKTGTPVRDPEFATRMDHKGTNICPSAMGFHNQGVDSYDPESRTLYAGLNHICMDWEPFMLPYRAGQFFVGATLAM  431 (571)
T ss_dssp             EEECTTTCSEEECGGGCCCTTCCEEEESSCTTCSSCSCBCEEETTTTEEEEEEECEEEEEEECCCCCCTTSCCCCEEEEE
T ss_pred             ccccccCCceecccccCCCCCCCceEECCCCccccCCCCceECCCCCEEEEEchhccccccccccccccCCcccccccee
Confidence                    111                          2467888777766653                           


Q ss_pred             ----------CCCeEEEEeCCC-------------------CCccEEEEEcCCCeEEEEecCCCceeeEEec
Q 042146          162 ----------YDGLYRILDAST-------------------PNGKFILVGTLDNTLRLWNYSTRKILKTYSG  204 (262)
Q Consensus       162 ----------~dg~i~~~d~~~-------------------~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~  204 (262)
                                .+|.|..||+.+                   ..+..++.++.||.|+.+|.++|+.+..++.
T Consensus       432 ~~~~~~~~~~~~g~l~a~D~~tG~~~W~~~~~~~~~~~~~~t~gg~v~~g~~dg~l~a~D~~tG~~lw~~~~  503 (571)
T 2ad6_A          432 YPGPNGPTKKEMGQIRAFDLTTGKAKWTKWEKFAAWGGTLYTKGGLVWYATLDGYLKALDNKDGKELWNFKM  503 (571)
T ss_dssp             EECTTSTTSCCCEEEEEECTTTCCEEEEEEESSCCCSBCEEETTTEEEEECTTSEEEEEETTTCCEEEEEEC
T ss_pred             ccCccccCCCCCCeEEEEECCCCCEEEEecCCCCccceeEEECCCEEEEEcCCCeEEEEECCCCCEEEEEeC
Confidence                      347888888776                   2356777789999999999999999988875

>3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus}

Probab=98.19  E-value=0.0013  Score=51.96  Aligned_cols=72  Identities=8%  Similarity=-0.081  Sum_probs=46.3

Q ss_pred             ceEEEEEeCCC-CEEEeecCCCeEEEEECCCCeeeeeeecCCCCeeeEEEccCCCEEEEEe-CC-CeEEEEeCCC
Q 042146          102 YVFCINFNPQS-NRIVSDTFNETIRIWDIKTGKCLKVLPAHSDPVTAIDFNRDGTMIVTSS-YD-GLYRILDAST  173 (262)
Q Consensus       102 ~v~~~~~~~~~-~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~d-g~i~~~d~~~  173 (262)
                      ....+++++.+ .++++-...+.|.+.++........+.........+++.|.+..|+.+. .. +.|..+++..
T Consensus       160 ~p~glavd~~~g~lY~~d~~~~~I~~~~~dg~~~~~l~~~~l~~P~giavdp~~g~ly~td~~~~~~I~r~~~dG  234 (386)
T 3v65_B          160 SPGGLAVDWVHDKLYWTDSGTSRIEVANLDGAHRKVLLWQSLEKPRAIALHPMEGTIYWTDWGNTPRIEASSMDG  234 (386)
T ss_dssp             CCCCEEEETTTTEEEEEETTTTEEEECBTTSCSCEEEECSSCSCEEEEEEETTTTEEEEEECSSSCEEEEEETTS
T ss_pred             CccEEEEEeCCCeEEEEcCCCCeEEEEeCCCCceEEeecCCCCCCcEEEEEcCCCeEEEeccCCCCEEEEEeCCC
Confidence            44678888754 4455556677899988865433333333335678999998666555544 44 6788887654

>3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron}

Probab=98.18  E-value=0.00023  Score=57.10  Aligned_cols=136  Identities=13%  Similarity=0.179  Sum_probs=82.7

Q ss_pred             ceEEEEEeC-CCCEEEeecCCCeEEEEECCCCeeeeeeecCCCCeeeEEEccCCCEEEEEeC-CC----eEEEEeCCC--
Q 042146          102 YVFCINFNP-QSNRIVSDTFNETIRIWDIKTGKCLKVLPAHSDPVTAIDFNRDGTMIVTSSY-DG----LYRILDAST--  173 (262)
Q Consensus       102 ~v~~~~~~~-~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-dg----~i~~~d~~~--  173 (262)
                      ....++++| ++..|+++...+.|+.+|+..++..... ........++++++++.|+++.. ++    .+..++...  
T Consensus       138 ~P~~lavdp~~~g~Lyv~d~~~~I~~id~~~~~v~~~~-~~~~~P~~ia~d~~G~~lyvad~~~~~~~~~v~~~~~~g~~  216 (430)
T 3tc9_A          138 GAVWLSFDPKNHNHLYLVGEQHPTRLIDFEKEYVSTVY-SGLSKVRTICWTHEADSMIITNDQNNNDRPNNYILTRESGF  216 (430)
T ss_dssp             CCCEEEEETTEEEEEEEEEBTEEEEEEETTTTEEEEEE-CCCSCEEEEEECTTSSEEEEEECCSCTTSEEEEEEEGGGTS
T ss_pred             CCCEEEECCCCCCeEEEEeCCCcEEEEECCCCEEEEEe-cCCCCcceEEEeCCCCEEEEEeCCCCcccceEEEEeCCCce
Confidence            456889998 4555666555588999999876644433 34556789999999996666654 22    233333211  


Q ss_pred             ------------------C-CccEEEEEcCCCeEEEEecCCCceeeEEeccCCceeEEEEEEecCCCeeEEccccceEEE
Q 042146          174 ------------------P-NGKFILVGTLDNTLRLWNYSTRKILKTYSGYTNSKYCISSTFSVTNGKYIVSHRDPVISV  234 (262)
Q Consensus       174 ------------------~-~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~  234 (262)
                                        + ++.++++-..++.|+.++...+.........                     .......+
T Consensus       217 ~~~~~l~~~~~p~giavdp~~g~lyv~d~~~~~V~~~~~~~~~~~~~~~~~---------------------~~~~P~gi  275 (430)
T 3tc9_A          217 KVITELTKGQNCNGAETHPINGELYFNSWNAGQVFRYDFTTQETTPLFTIQ---------------------DSGWEFHI  275 (430)
T ss_dssp             CSEEEEEECSSCCCEEECTTTCCEEEEETTTTEEEEEETTTTEEEEEEECS---------------------SSSCCEEE
T ss_pred             eeeeeeccCCCceEEEEeCCCCEEEEEECCCCEEEEEECCCCcEEEEEEcC---------------------CCCcceeE
Confidence                              3 4444444445566666666544332111110                     12346789


Q ss_pred             EEcCCCCeEEEeeecCCCcEEEEeec
Q 042146          235 ASHPAKNIIASGALDNDRTMKIWTQE  260 (262)
Q Consensus       235 ~~~p~~~~l~~~~~d~d~~i~iw~~~  260 (262)
                      +|+|++++|+.+.. ..+.|..++.+
T Consensus       276 a~~pdG~~lyv~d~-~~~~I~~~~~d  300 (430)
T 3tc9_A          276 QFHPSGNYAYIVVV-NQHYILRSDYD  300 (430)
T ss_dssp             EECTTSSEEEEEET-TTTEEEEEEEE
T ss_pred             EEcCCCCEEEEEEC-CCCEEEEEeCC
Confidence            99999995555542 57788888765

>1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1

Probab=98.15  E-value=0.00018  Score=59.98  Aligned_cols=124  Identities=15%  Similarity=0.236  Sum_probs=86.9

Q ss_pred             eeEEEEecCCCccceeccc--CC--------cceEEEEEe-CCCC---EEEeecCCCeEEEEECCCCeeeeeeecCC---
Q 042146           80 ATIRLWDVPTATSLKTLIG--HT--------NYVFCINFN-PQSN---RIVSDTFNETIRIWDIKTGKCLKVLPAHS---  142 (262)
Q Consensus        80 ~~i~v~d~~~~~~~~~~~~--~~--------~~v~~~~~~-~~~~---~l~~~~~dg~i~vwd~~~~~~~~~~~~~~---  142 (262)
                      ..|..+|..+++.+..++.  |.        .++. +... .+|+   .++.++.+|.++++|.++++.+..+....   
T Consensus       291 ~~v~AlD~~TG~~~W~~q~~~~d~wd~~~~~~p~l-~~~~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~lw~~~~~~~~~  369 (582)
T 1flg_A          291 SGQVGVDPSSGEVKWFYQHTPNDAWDFSGNNELVL-FDYKAKDGKIVKATAHADRNGFFYVVDRSNGKLQNAFPFVDNIT  369 (582)
T ss_dssp             SEEEEECTTTCCEEEEEESSTTCCSCCCCCCCCEE-EEEECSSSCEEEEEEEECTTSEEEEEETTTCCEEEEEESSSCCC
T ss_pred             ceEEEEeCCCCCEEEEEeCCCCCcccccCCCCcEE-EeeecCCCCEEEEEEEECCCceEEEEECCCCCEecccccccCcc
Confidence            4688999999998877642  21        1222 2222 4664   78889999999999999998887654321   


Q ss_pred             ----------CCe--------------------------------eeEEEccCCCEEEEEe-------------------
Q 042146          143 ----------DPV--------------------------------TAIDFNRDGTMIVTSS-------------------  161 (262)
Q Consensus       143 ----------~~v--------------------------------~~~~~~~~~~~l~~~~-------------------  161 (262)
                                .++                                ..++++|+..++++..                   
T Consensus       370 ~~~~~~~~~g~p~~~~~~~~~~~~~~~~~~~~~~~~P~~~Gg~~w~~~a~dp~~g~~yv~~~~~~~~~~~~~~~~~~g~~  449 (582)
T 1flg_A          370 WASHIDLKTGRPVEREGQRPPLPEPGQKHGKAVEVSPPFLGGKNWNPMAYSQDTGLFYVPANHWKEDYWTEEVSYTKGSA  449 (582)
T ss_dssp             SEEEECTTTCCEEECTTCSCCCCCTTCSSCCCEEESSCTTCSSCSSCCEECTTTCCEEEEEECEEEEEEECCCCCCTTSC
T ss_pred             ccccccccCCCEeEccccCCccccccccCCCceEECcCCccccCCCCceECCCCCEEEEechhcceeeecccccccCCCc
Confidence                      000                                1346677555555432                   


Q ss_pred             --------------CCCeEEEEeCCC-------------------CCccEEEEEcCCCeEEEEecCCCceeeEEec
Q 042146          162 --------------YDGLYRILDAST-------------------PNGKFILVGTLDNTLRLWNYSTRKILKTYSG  204 (262)
Q Consensus       162 --------------~dg~i~~~d~~~-------------------~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~  204 (262)
                                    .+|.|.-||+.+                   ..+..++.|+.||.++.||.++|+.+..++.
T Consensus       450 ~~g~~~~~~p~~~~~~G~l~A~D~~tG~~~W~~~~~~~~~~g~~~tagglvf~g~~dg~l~A~D~~tG~~lW~~~~  525 (582)
T 1flg_A          450 YLGMGFRIKRMYDDHVGSLRAMDPVSGKVVWEHKEHLPLWAGVLATAGNLVFTGTGDGYFKAFDAKSGKELWKFQT  525 (582)
T ss_dssp             CCCEEEEEEESCSSCSEEEEEECTTTCCEEEEEEESSCCCSCCEEETTTEEEEECTTSEEEEEETTTCCEEEEEEC
T ss_pred             eeccceeecCCCCCCcceEEEEECCCCCEEEEecCCCCCcccceEeCCCEEEEECCCCcEEEEECCCCCEEEEecC
Confidence                          257888899876                   2356788899999999999999999998875

>1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A*

Probab=98.15  E-value=0.00098  Score=55.72  Aligned_cols=123  Identities=16%  Similarity=0.158  Sum_probs=84.2

Q ss_pred             eEEEEecCCCccceecccCC----------cceEEEEEe-CCC---CEEEeecCCCeEEEEECCCCeeeeeeecCC----
Q 042146           81 TIRLWDVPTATSLKTLIGHT----------NYVFCINFN-PQS---NRIVSDTFNETIRIWDIKTGKCLKVLPAHS----  142 (262)
Q Consensus        81 ~i~v~d~~~~~~~~~~~~~~----------~~v~~~~~~-~~~---~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~----  142 (262)
                      .|..+|..+++.+..++...          .++. +... .+|   +.++.++.+|.++++|.++++.+.......    
T Consensus       279 sv~Ald~~TG~~~W~~q~~~~d~wd~d~~~~p~l-~d~~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~lw~~~~~~~~~~  357 (599)
T 1w6s_A          279 TIFGRDADTGEAKFGYQKTPHDEWDYAGVNVMML-SEQKDKDGKARKLLTHPDRNGIVYTLDRTDGALVSANKLDDTVNV  357 (599)
T ss_dssp             EEEEEETTTCCEEEEEESSTTCSSCCCCCCCCEE-EEEECTTSCEEEEEEEECTTSEEEEEETTTCCEEEEEESSTTCCS
T ss_pred             eEEEEeCCCCceeeEeecCCCccccccCCCccEE-EeccccCCcEEEEEEEECCCcEEEEEECCCCCEeecccccCCccc
Confidence            57888888888876654321          1222 2222 467   467788999999999999999887654211    


Q ss_pred             ---------CCe--------------------------eeEEEccCCCEEEEEe--------------------------
Q 042146          143 ---------DPV--------------------------TAIDFNRDGTMIVTSS--------------------------  161 (262)
Q Consensus       143 ---------~~v--------------------------~~~~~~~~~~~l~~~~--------------------------  161 (262)
                               .++                          ..++++|+..++++..                          
T Consensus       358 ~~~~~~~~g~p~~~~~~~~~~~~~~~~~~P~~~Gg~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~~~g~~~~g~~~~  437 (599)
T 1w6s_A          358 FKSVDLKTGQPVRDPEYGTRMDHLAKDICPSAMGYHNQGHDSYDPKRELFFMGINHICMDWEPFMLPYKAGQFFVGATLN  437 (599)
T ss_dssp             EEEECTTTCCEEECGGGCCCTTCCEEEESSCTTCSSCSCBCEEETTTTEEEEEEECEEEEEEECCCCCCTTSCCCCEEEE
T ss_pred             ccccccCCCceeeccccCCCCCCCccEeccCcccccCCCCccCCCCCCEEEEeccccceeeecccccccCCcceecccce
Confidence                     111                          2456677665554431                          


Q ss_pred             -------------CCCeEEEEeCCC-------------------CCccEEEEEcCCCeEEEEecCCCceeeEEec
Q 042146          162 -------------YDGLYRILDAST-------------------PNGKFILVGTLDNTLRLWNYSTRKILKTYSG  204 (262)
Q Consensus       162 -------------~dg~i~~~d~~~-------------------~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~  204 (262)
                                   .+|.+.-||+.+                   ..+..++.++.||.++.||.++|+.+..++.
T Consensus       438 ~~~~p~~~~~~~~~~G~l~A~D~~tG~~~W~~~~~~~~~~g~~~tagg~vf~gt~dg~l~A~D~~tG~~lW~~~l  512 (599)
T 1w6s_A          438 MYPGPKGDRQNYEGLGQIKAYNAITGDYKWEKMERFAVWGGTMATAGDLVFYGTLDGYLKARDSDTGDLLWKFKI  512 (599)
T ss_dssp             EEECTTSBTTTTBCCEEEEEECTTTCCEEEEEEESSCCCSBCEEETTTEEEEECTTSEEEEEETTTCCEEEEEEC
T ss_pred             eccCCcCCcccCCCcCeEEEEECCCCCEEeEecCCCCccCcceEecCCEEEEECCCCeEEEEECCCCCEEEEeeC
Confidence                         346788888766                   2456777889999999999999999988864

>3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus}

Probab=98.14  E-value=0.0015  Score=50.83  Aligned_cols=73  Identities=10%  Similarity=0.100  Sum_probs=48.9

Q ss_pred             cceEEEEEeCCCCEE-EeecCCCeEEEEECCCCeeeeeeecCCCCeeeEEEccCC-CEEEEEeCCCeEEEEeCCC
Q 042146          101 NYVFCINFNPQSNRI-VSDTFNETIRIWDIKTGKCLKVLPAHSDPVTAIDFNRDG-TMIVTSSYDGLYRILDAST  173 (262)
Q Consensus       101 ~~v~~~~~~~~~~~l-~~~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~dg~i~~~d~~~  173 (262)
                      .....++|++....| .+-...+.|..+++........+.........+++.+.+ +++++-...+.|.+.++..
T Consensus        73 ~~~~~l~~d~~~~~ly~~D~~~~~I~r~~~~g~~~~~~~~~~~~~p~glavd~~~g~ly~~d~~~~~I~~~~~dG  147 (349)
T 3v64_C           73 ENAIALDFHHRRELVFWSDVTLDRILRANLNGSNVEEVVSTGLESPGGLAVDWVHDKLYWTDSGTSRIEVANLDG  147 (349)
T ss_dssp             SCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTS
T ss_pred             CceEEEEEeccccEEEEEeccCCceEEEecCCCCceEEEeCCCCCccEEEEecCCCeEEEEcCCCCeEEEEcCCC
Confidence            447899999855554 455567899999987665433333333445789998754 4455555677888888764

>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A

Probab=98.12  E-value=0.00039  Score=58.98  Aligned_cols=93  Identities=11%  Similarity=0.157  Sum_probs=57.2

Q ss_pred             eEEEEecCCCccce--ecc-cCCcceEEEEEeCCCCEEEeecC-CCeEEEEECCCCeeeeeeecCCC-CeeeEEEccCCC
Q 042146           81 TIRLWDVPTATSLK--TLI-GHTNYVFCINFNPQSNRIVSDTF-NETIRIWDIKTGKCLKVLPAHSD-PVTAIDFNRDGT  155 (262)
Q Consensus        81 ~i~v~d~~~~~~~~--~~~-~~~~~v~~~~~~~~~~~l~~~~~-dg~i~vwd~~~~~~~~~~~~~~~-~v~~~~~~~~~~  155 (262)
                      .+.+||..+++...  .+. .+.....++++.+++++++.|+. +..+.+||+.+.+-...-..+.. .-.+++..++++
T Consensus       220 ~~~~yd~~t~~w~~~~~~~~~~~~~~~~~~~~~~g~lyv~GG~~~~~v~~yd~~t~~W~~~~~~~~~R~~~s~~~~~dg~  299 (656)
T 1k3i_A          220 LTSSWDPSTGIVSDRTVTVTKHDMFCPGISMDGNGQIVVTGGNDAKKTSLYDSSSDSWIPGPDMQVARGYQSSATMSDGR  299 (656)
T ss_dssp             EEEEECTTTCCBCCCEEEECSCCCSSCEEEECTTSCEEEECSSSTTCEEEEEGGGTEEEECCCCSSCCSSCEEEECTTSC
T ss_pred             EEEEEeCCCCcEEeCcccCCCCCCccccccCCCCCCEEEeCCCCCCceEEecCcCCceeECCCCCccccccceEEecCCe
Confidence            46677776654322  221 12223345677789999999884 45899999987753322111111 123455667899


Q ss_pred             EEEEEe-CC-----CeEEEEeCCC
Q 042146          156 MIVTSS-YD-----GLYRILDAST  173 (262)
Q Consensus       156 ~l~~~~-~d-----g~i~~~d~~~  173 (262)
                      +++.|+ .+     ..+.+||..+
T Consensus       300 iyv~GG~~~~~~~~~~~e~yd~~t  323 (656)
T 1k3i_A          300 VFTIGGSWSGGVFEKNGEVYSPSS  323 (656)
T ss_dssp             EEEECCCCCSSSCCCCEEEEETTT
T ss_pred             EEEEeCcccCCcccccceEeCCCC
Confidence            999988 44     4688888765

>3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus}

Probab=98.11  E-value=0.0017  Score=50.48  Aligned_cols=73  Identities=8%  Similarity=-0.089  Sum_probs=47.3

Q ss_pred             cceEEEEEeCC-CCEEEeecCCCeEEEEECCCCeeeeeeecCCCCeeeEEEccCCCEEEEE-eCC-CeEEEEeCCC
Q 042146          101 NYVFCINFNPQ-SNRIVSDTFNETIRIWDIKTGKCLKVLPAHSDPVTAIDFNRDGTMIVTS-SYD-GLYRILDAST  173 (262)
Q Consensus       101 ~~v~~~~~~~~-~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~~d-g~i~~~d~~~  173 (262)
                      .....+++++. +++.++-...+.|.+.++........+...-.....++++|.+..|+.+ ... +.|..+++..
T Consensus       116 ~~p~glavd~~~g~ly~~d~~~~~I~~~~~dG~~~~~l~~~~l~~P~~iavdp~~g~ly~td~~~~~~I~r~~~dG  191 (349)
T 3v64_C          116 ESPGGLAVDWVHDKLYWTDSGTSRIEVANLDGAHRKVLLWQSLEKPRAIALHPMEGTIYWTDWGNTPRIEASSMDG  191 (349)
T ss_dssp             SCCCEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECTTCSCEEEEEEETTTTEEEEEECSSSCEEEEEETTS
T ss_pred             CCccEEEEecCCCeEEEEcCCCCeEEEEcCCCCceEEEEeCCCCCcceEEEecCcCeEEEeccCCCCEEEEEeCCC
Confidence            34568899985 4455566667899999987543333333333456899999965554444 444 7888888654

>3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus}

Probab=98.09  E-value=0.0021  Score=50.68  Aligned_cols=91  Identities=11%  Similarity=0.046  Sum_probs=56.4

Q ss_pred             EEEEecCCCccceecccCCcceEEEEEeCCCCE-EEeecCCCeEEEEECCCCeeeeeeecCCCCeeeEEEccCCC-EEEE
Q 042146           82 IRLWDVPTATSLKTLIGHTNYVFCINFNPQSNR-IVSDTFNETIRIWDIKTGKCLKVLPAHSDPVTAIDFNRDGT-MIVT  159 (262)
Q Consensus        82 i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~-l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~~  159 (262)
                      |+.+++.......... .......++|++.+.. +++-...+.|..+++........+.........+++.+.+. ++++
T Consensus        98 I~~i~~~~~~~~~~~~-~~~~~~gl~~d~~~~~ly~~D~~~~~I~r~~~~g~~~~~~~~~~~~~p~glavd~~~g~lY~~  176 (386)
T 3v65_B           98 IRQVLPHRSEYTLLLN-NLENAIALDFHHRRELVFWSDVTLDRILRANLNGSNVEEVVSTGLESPGGLAVDWVHDKLYWT  176 (386)
T ss_dssp             EEEECTTSCCCEEEEC-SCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCCEEEEECSSCSCCCCEEEETTTTEEEEE
T ss_pred             ceeeccCCCcEEEEec-CCCccEEEEEecCCCeEEEEeCCCCcEEEEecCCCCcEEEEeCCCCCccEEEEEeCCCeEEEE
Confidence            5555655443332222 3345789999985554 45556678999999886654443333333457889987544 4455


Q ss_pred             EeCCCeEEEEeCCC
Q 042146          160 SSYDGLYRILDAST  173 (262)
Q Consensus       160 ~~~dg~i~~~d~~~  173 (262)
                      -...+.|.+.++..
T Consensus       177 d~~~~~I~~~~~dg  190 (386)
T 3v65_B          177 DSGTSRIEVANLDG  190 (386)
T ss_dssp             ETTTTEEEECBTTS
T ss_pred             cCCCCeEEEEeCCC
Confidence            55677888888654

>2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major}

Probab=98.03  E-value=0.00012  Score=63.02  Aligned_cols=69  Identities=13%  Similarity=0.038  Sum_probs=47.2

Q ss_pred             ceEEEEEe-CCCCEEEeec-----CCCeEEEEECCCC-eeeee-eecCCCCeeeEEEccCCCEEEEEeCC-----CeEEE
Q 042146          102 YVFCINFN-PQSNRIVSDT-----FNETIRIWDIKTG-KCLKV-LPAHSDPVTAIDFNRDGTMIVTSSYD-----GLYRI  168 (262)
Q Consensus       102 ~v~~~~~~-~~~~~l~~~~-----~dg~i~vwd~~~~-~~~~~-~~~~~~~v~~~~~~~~~~~l~~~~~d-----g~i~~  168 (262)
                      .+...+|+ |||++|+-+.     ....|+++|+.++ +.+.. +.   .....++|+||++.|+....+     ..|..
T Consensus       175 ~~~~~~~S~PDG~~lAy~~~~~G~~~~~l~v~dl~~g~~~l~~~~~---~~~~~~~WspDg~~l~y~~~d~~~~~~~v~~  251 (751)
T 2xe4_A          175 DVMEVKPAPPEHDLVAFSVDMSGNEVYTIEFKRISDPSQTIADKVS---GTNGEIVWGPDHTSLFYVTKDETLRENKVWR  251 (751)
T ss_dssp             EEEEEEECTTTTCEEEEEEESSSSSCEEEEEEETTCTTCCCCCCEE---EECSCCEECSSTTEEEEEEECTTCCEEEEEE
T ss_pred             EEeeeEecCCCCCEEEEEEeCCCCceEEEEEEECCCCCEeCCcccc---CceeeEEEecCCCEEEEEEECCCCCCCEEEE
Confidence            57789999 9999887432     2235999999988 63221 21   123578999999877776654     25777


Q ss_pred             EeCCC
Q 042146          169 LDAST  173 (262)
Q Consensus       169 ~d~~~  173 (262)
                      +++.+
T Consensus       252 ~~lgt  256 (751)
T 2xe4_A          252 HVMGK  256 (751)
T ss_dssp             EETTS
T ss_pred             EECCC
Confidence            77654

>4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A*

Probab=97.99  E-value=0.0064  Score=52.79  Aligned_cols=142  Identities=18%  Similarity=0.237  Sum_probs=83.4

Q ss_pred             CcceEEEEEeCCCCEEEeecCCCeEEEEECCCCeeeeeeec-------CCCCeeeEEEccCCCEEEEEeCCCeEEEEeCC
Q 042146          100 TNYVFCINFNPQSNRIVSDTFNETIRIWDIKTGKCLKVLPA-------HSDPVTAIDFNRDGTMIVTSSYDGLYRILDAS  172 (262)
Q Consensus       100 ~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~-------~~~~v~~~~~~~~~~~l~~~~~dg~i~~~d~~  172 (262)
                      ...|.++...+++.+.+.. .+ -|.+||..+++.......       ....|.++...++|. |..|+.++-|..|+..
T Consensus       262 ~~~i~~i~~d~~g~lWigt-~~-Gl~~~~~~~~~~~~~~~~~~~~~~l~~~~i~~i~~D~~g~-lWigt~~~Gl~~~~~~  338 (795)
T 4a2l_A          262 SNYIRSLAMDSQNRLWIGT-FN-DLNIYHEGTDSFASYSSNPVENGSLSQRSVRSIFMDSQGG-MWLGTYFGGLNYYHPI  338 (795)
T ss_dssp             CSBEEEEEECTTSCEEEEE-SS-CEEEEETTTTEEEEECCCTTSTTSCSSSCEEEEEECTTSC-EEEEESSSCEEEECGG
T ss_pred             CCeEEEEEEcCCCCEEEEe-CC-hhheEcCCCCeEEEEecCCCCCCCCCCCcEEEEEEeCCcC-EEEEECCCCeEEeCCC
Confidence            3569999999888766544 34 488899877654332211       235689999988876 5567766667777643


Q ss_pred             C-------------------------CCccEEEEEcCCCeEEEEecCCCceeeEEeccCCceeEEEEEEecCCCeeEEcc
Q 042146          173 T-------------------------PNGKFILVGTLDNTLRLWNYSTRKILKTYSGYTNSKYCISSTFSVTNGKYIVSH  227 (262)
Q Consensus       173 ~-------------------------~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  227 (262)
                      .                         .....|-.|+.++-|..||..+++..............              -.
T Consensus       339 ~~~~~~~~~~~~~~~l~~~~V~~i~~d~~g~lWiGt~~~Gl~~~~~~~~~~~~~~~~~~~~~~~--------------l~  404 (795)
T 4a2l_A          339 RNRFKNIRNIPYKNSLSDNVVSCIVEDKDKNLWIGTNDGGLNLYNPITQRFTSYTLQEDESARG--------------IG  404 (795)
T ss_dssp             GGSSEEECCCTTSSSCSCSSEEEEEECTTSCEEEEESSSCEEEECTTTCCEEEECCC------C--------------CS
T ss_pred             cccceEEcCCCCCCCCCCCeeEEEEECCCCCEEEEECCCCeEEEcCCCCcEEEEecCCCCcccC--------------CC
Confidence            2                         11234556777767888887765543322110000000              02


Q ss_pred             ccceEEEEEcCCCCeEEEeeecCCCcEEEEeec
Q 042146          228 RDPVISVASHPAKNIIASGALDNDRTMKIWTQE  260 (262)
Q Consensus       228 ~~~v~~~~~~p~~~~l~~~~~d~d~~i~iw~~~  260 (262)
                      ...|.++...+++..|..|+  .++-|..|+.+
T Consensus       405 ~~~v~~i~~d~~g~~lWigt--~~~Gl~~~d~~  435 (795)
T 4a2l_A          405 SNNIKAVYVDEKKSLVYIGT--HAGGLSILHRN  435 (795)
T ss_dssp             CSCEEEEEEETTTTEEEEEE--TTTEEEEEETT
T ss_pred             CccEEEEEEcCCCCEEEEEe--CcCceeEEeCC
Confidence            34677777777777344444  44556666643

>4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A*

Probab=97.99  E-value=0.0064  Score=52.78  Aligned_cols=147  Identities=10%  Similarity=0.078  Sum_probs=83.9

Q ss_pred             cCceEEEEEccCCCeEEEecCCCeEEEeecCCCCCC--CCC------CCCCCcccc-CCcccc--ccc-eeEEEEecCCC
Q 042146           23 LRAVSYVKFSHDGRLLTSSSAEKTLLTYSLSSISNF--DST------PPSPLQKFT-GHEQGI--SDL-ATIRLWDVPTA   90 (262)
Q Consensus        23 ~~~v~~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~--~~~------~~~~~~~~~-~~~~~v--~~~-~~i~v~d~~~~   90 (262)
                      ...|.++...++|. |..|+.++-|..++.......  ...      ....+..+. .....+  ... +-|..++..++
T Consensus       309 ~~~i~~i~~D~~g~-lWigt~~~Gl~~~~~~~~~~~~~~~~~~~~~l~~~~V~~i~~d~~g~lWiGt~~~Gl~~~~~~~~  387 (795)
T 4a2l_A          309 QRSVRSIFMDSQGG-MWLGTYFGGLNYYHPIRNRFKNIRNIPYKNSLSDNVVSCIVEDKDKNLWIGTNDGGLNLYNPITQ  387 (795)
T ss_dssp             SSCEEEEEECTTSC-EEEEESSSCEEEECGGGGSSEEECCCTTSSSCSCSSEEEEEECTTSCEEEEESSSCEEEECTTTC
T ss_pred             CCcEEEEEEeCCcC-EEEEECCCCeEEeCCCcccceEEcCCCCCCCCCCCeeEEEEECCCCCEEEEECCCCeEEEcCCCC
Confidence            35699999988887 555677777888876432110  000      011111111 111111  111 15677776655


Q ss_pred             ccceecc--------cCCcceEEEEEeCCCCEEEeecCCCeEEEEECCCCeeeeeee----cCCCCeeeEEEccCCCEEE
Q 042146           91 TSLKTLI--------GHTNYVFCINFNPQSNRIVSDTFNETIRIWDIKTGKCLKVLP----AHSDPVTAIDFNRDGTMIV  158 (262)
Q Consensus        91 ~~~~~~~--------~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~----~~~~~v~~~~~~~~~~~l~  158 (262)
                      +...-..        -....|.++...++++.|..|+.++-|.+||.++++......    .....|.++...+++.+.+
T Consensus       388 ~~~~~~~~~~~~~~~l~~~~v~~i~~d~~g~~lWigt~~~Gl~~~d~~~~~~~~~~~~~~~l~~~~v~~i~~d~~g~lwi  467 (795)
T 4a2l_A          388 RFTSYTLQEDESARGIGSNNIKAVYVDEKKSLVYIGTHAGGLSILHRNSGQVENFNQRNSQLVNENVYAILPDGEGNLWL  467 (795)
T ss_dssp             CEEEECCC------CCSCSCEEEEEEETTTTEEEEEETTTEEEEEETTTCCEEEECTTTSCCSCSCEEEEEECSSSCEEE
T ss_pred             cEEEEecCCCCcccCCCCccEEEEEEcCCCCEEEEEeCcCceeEEeCCCCcEEEeecCCCCcCCCeeEEEEECCCCCEEE
Confidence            4322211        123568999999888856666766779999988776433221    1345789998888777554


Q ss_pred             EEeCCCeEEEEeCC
Q 042146          159 TSSYDGLYRILDAS  172 (262)
Q Consensus       159 ~~~~dg~i~~~d~~  172 (262)
                      . +.+ -+..||..
T Consensus       468 g-t~~-Gl~~~~~~  479 (795)
T 4a2l_A          468 G-TLS-ALVRFNPE  479 (795)
T ss_dssp             E-ESS-CEEEEETT
T ss_pred             E-ecC-ceeEEeCC
Confidence            4 444 46667654

>2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A*

Probab=97.98  E-value=0.0013  Score=54.79  Aligned_cols=138  Identities=14%  Similarity=0.072  Sum_probs=78.8

Q ss_pred             CCeEEEecCCCeEEEeecCCCCCC-CCCCCC-----CC---ccccCCcccccc-------ceeEEEEecCCCccceeccc
Q 042146           35 GRLLTSSSAEKTLLTYSLSSISNF-DSTPPS-----PL---QKFTGHEQGISD-------LATIRLWDVPTATSLKTLIG   98 (262)
Q Consensus        35 ~~~l~s~~~d~~i~iw~~~~~~~~-~~~~~~-----~~---~~~~~~~~~v~~-------~~~i~v~d~~~~~~~~~~~~   98 (262)
                      +..++.++.|+.|..+|..+.+.. ......     ..   .......--+..       .+.|..+|..+++.+.++..
T Consensus       115 ~~~v~v~~~dg~l~alD~~tG~~~W~~~~~~~~~~~~~~~~P~v~~g~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~~~  194 (571)
T 2ad6_A          115 AGQIVKKQANGHLLALDAKTGKINWEVEVCDPKVGSTLTQAPFVAKDTVLMGCSGAELGVRGAVNAFDLKTGELKWRAFA  194 (571)
T ss_dssp             TTEEEEECTTSEEEEEETTTCCEEEEEECCCGGGTCBCCSCCEEETTEEEEECBCGGGTCCCEEEEEETTTCCEEEEEES
T ss_pred             CCEEEEEeCCCEEEEEECCCCCEEEEecCCCCCccceeccCCEEECCEEEEEecCCccCCCCEEEEEECCCCcEEEEEcc
Confidence            456778888999999988664321 000000     00   000010000111       34789999999988765542


Q ss_pred             CCcc--------------------------------------eEEEEEeCCCCEEEeecCC----------------CeE
Q 042146           99 HTNY--------------------------------------VFCINFNPQSNRIVSDTFN----------------ETI  124 (262)
Q Consensus        99 ~~~~--------------------------------------v~~~~~~~~~~~l~~~~~d----------------g~i  124 (262)
                      ....                                      ...+++.++...++.+..+                +.|
T Consensus       195 ~~~~~~~~~~p~~~~~~~~~G~~~~g~~~w~~~~~~~gg~~~w~~~a~d~~~g~vy~~~g~~~~~~~~~~~gd~~y~~~v  274 (571)
T 2ad6_A          195 TGSDDSVRLAKDFNSANPHYGQFGLGTKTWEGDAWKIGGGTNWGWYAYDPKLNLFYYGSGNPAPWNETMRPGDNKWTMTI  274 (571)
T ss_dssp             SSCHHHHTBCTTTTTTCGGGCCSSHHHHTSSTTGGGGCCCCCCSCCEEETTTTEEEEECCCCSCSCGGGSCSCCTTTTEE
T ss_pred             CCCccccccCcccccccccccccccccccCcccceecCCCCeeeeEEEcCCCCeEEEECCCCccccCCccCCCceeEEEE
Confidence            2110                                      0235677766777665532                369


Q ss_pred             EEEECCCCeeeeeeecCC----------CCeeeEEEccCCC---EEEEEeCCCeEEEEeCCC
Q 042146          125 RIWDIKTGKCLKVLPAHS----------DPVTAIDFNRDGT---MIVTSSYDGLYRILDAST  173 (262)
Q Consensus       125 ~vwd~~~~~~~~~~~~~~----------~~v~~~~~~~~~~---~l~~~~~dg~i~~~d~~~  173 (262)
                      ..+|.++++.+..++...          .++. +...++|+   .++.++.+|.+.++|..+
T Consensus       275 ~Ald~~tG~~~W~~~~~~~d~~d~~~~~~p~l-~~~~~~G~~~~~v~~~~~~G~l~~lD~~t  335 (571)
T 2ad6_A          275 WGRDLDTGMAKWGYQKTPHDEWDFAGVNQMVL-TDQPVNGKMTPLLSHIDRNGILYTLNREN  335 (571)
T ss_dssp             EEEETTTCCEEEEEESSTTCSSCCCCCCCCEE-EEEEETTEEEEEEEEECTTSEEEEEETTT
T ss_pred             EEEecCCCcEEEEecCCCCcccccccCCCCEE-EecccCCcEEEEEEEeCCCcEEEEEECCC
Confidence            999999999988875321          1211 22223663   567788888888888654

>2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis}

Probab=97.97  E-value=0.0018  Score=49.37  Aligned_cols=152  Identities=8%  Similarity=0.108  Sum_probs=83.7

Q ss_pred             cceEEEEEeCCCCEEEeec-CCCeEEEEECCCCeeeee-eec----CC--CCeeeEEE---ccCCCEEEEEe--------
Q 042146          101 NYVFCINFNPQSNRIVSDT-FNETIRIWDIKTGKCLKV-LPA----HS--DPVTAIDF---NRDGTMIVTSS--------  161 (262)
Q Consensus       101 ~~v~~~~~~~~~~~l~~~~-~dg~i~vwd~~~~~~~~~-~~~----~~--~~v~~~~~---~~~~~~l~~~~--------  161 (262)
                      ..-.+++|++....++.++ ..+.|..||...+..... +..    ..  ..+..|.|   .|+++++++..        
T Consensus        13 ~yPE~~~wd~~~g~~~vs~l~~g~V~~~~~~~~~~~~~~~~~~s~~g~~~~~~sGl~~~~~D~~grL~vv~~~~~af~~~   92 (334)
T 2p9w_A           13 LTPEDTIYDRTRQVFYQSNLYKGRIEVYNPKTQSHFNVVIDGASSNGDGEQQMSGLSLLTHDNSKRLFAVMKNAKSFNFA   92 (334)
T ss_dssp             CCCSCEEEETTTTEEEEEETTTTEEEEECTTTCCEEEECCTTTCCSSCCSEEEEEEEESSSSSCCEEEEEEEETTTTCTT
T ss_pred             cCCcCccCcCCCCEEEEEeccCCEEEEEcCCCCeEEEEecCCccccCCCcceeeEEEEeccCCCCcEEEEEccccccccc
Confidence            3445789998555555554 789999999975543322 221    11  13578999   68877777544        


Q ss_pred             -----CCCeEEEEeCC---C------------CCc-------c----EEEEEcCCCeEEEEecCCCceeeEEeccCCcee
Q 042146          162 -----YDGLYRILDAS---T------------PNG-------K----FILVGTLDNTLRLWNYSTRKILKTYSGYTNSKY  210 (262)
Q Consensus       162 -----~dg~i~~~d~~---~------------~~~-------~----~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~  210 (262)
                           .+..+..||+.   +            .++       .    .=++-..+|.++|=+......+..+........
T Consensus        93 g~~~~g~~~v~~~Dl~~~~tg~~~~~~dL~~~~~~~~~~~g~~~~~~nDvavD~~GnaYVt~s~~~~~I~rV~pdG~~~~  172 (334)
T 2p9w_A           93 DQSSHGASSFHSFNLPLSENSKPVWSVNFEKVQDEFEKKAGKRPFGVVQSAQDRDGNSYVAFALGMPAIARVSADGKTVS  172 (334)
T ss_dssp             SCCSSSCCEEEEEESSCCTTCCCSEEEESHHHHHHHHHHHSSCCEEEEEEEECTTSCEEEEEEESSCEEEEECTTSCCEE
T ss_pred             ccccCCCCEEEEEcCCcCCCCCEEEEecCccccccccccccccccCCceeEECCCCCEEEeCCCCCCeEEEEeCCCCEEe
Confidence                 26789999988   3            000       1    011223445555533322011222222111111


Q ss_pred             EEEEEEecCCCeeEEccccceEEEEEcCCCCeEEEeeecCCCcEEEEeec
Q 042146          211 CISSTFSVTNGKYIVSHRDPVISVASHPAKNIIASGALDNDRTMKIWTQE  260 (262)
Q Consensus       211 ~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~d~d~~i~iw~~~  260 (262)
                      ..  ....+..    ......+.|+++|++..|++..  ..|.|.-+|+.
T Consensus       173 ~~--~~~~~~~----~~~~G~nGIv~~pdg~~Liv~~--~~g~L~~fD~~  214 (334)
T 2p9w_A          173 TF--AWESGNG----GQRPGYSGITFDPHSNKLIAFG--GPRALTAFDVS  214 (334)
T ss_dssp             EE--EECCCCS----SSCCSCSEEEEETTTTEEEEES--SSSSEEEEECS
T ss_pred             ee--eecCCCc----ccccCcceEEEeCCCCEEEEEc--CCCeEEEEcCC
Confidence            00  0000000    0223467999999999999987  68888888864

>1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1

Probab=97.95  E-value=0.0033  Score=48.10  Aligned_cols=91  Identities=14%  Similarity=0.104  Sum_probs=52.9

Q ss_pred             EEEEecCCCccceecccCCcceEEEEEeCCCCE-EEeecCCCeEEEEECCC----CeeeeeeecCCCCeeeEEEccCCC-
Q 042146           82 IRLWDVPTATSLKTLIGHTNYVFCINFNPQSNR-IVSDTFNETIRIWDIKT----GKCLKVLPAHSDPVTAIDFNRDGT-  155 (262)
Q Consensus        82 i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~-l~~~~~dg~i~vwd~~~----~~~~~~~~~~~~~v~~~~~~~~~~-  155 (262)
                      |+..|+...+....+. .......++|++.+.. +++-...+.|..+++..    ......+...-.....+++.+.+. 
T Consensus        12 I~~i~~~~~~~~~~~~-~~~~p~g~~~d~~~~~ly~~D~~~~~I~~~~~~g~~~~~~~~~~~~~~~~~p~glavd~~~~~   90 (316)
T 1ijq_A           12 VRKMTLDRSEYTSLIP-NLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSN   90 (316)
T ss_dssp             EEEEETTSCCCEEEEC-SCSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSCSCCCEEEEETTTTE
T ss_pred             EEEEECCCcceEehhc-CCCceEEEEEEeCCCEEEEEECCCCcEEEEECCCCCCCcccEEEEeCCCCCcCEEEEeecCCe
Confidence            4444554444333222 2345789999986554 45555678999999875    222222322223457899987544 


Q ss_pred             EEEEEeCCCeEEEEeCCC
Q 042146          156 MIVTSSYDGLYRILDAST  173 (262)
Q Consensus       156 ~l~~~~~dg~i~~~d~~~  173 (262)
                      ++++-...+.|.++++..
T Consensus        91 ly~~d~~~~~I~~~~~~g  108 (316)
T 1ijq_A           91 IYWTDSVLGTVSVADTKG  108 (316)
T ss_dssp             EEEEETTTTEEEEEETTS
T ss_pred             EEEEECCCCEEEEEeCCC
Confidence            445556678888888754

>1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A*

Probab=97.95  E-value=0.0018  Score=54.17  Aligned_cols=93  Identities=19%  Similarity=0.181  Sum_probs=61.0

Q ss_pred             eeEEEEecCCCccceecccCCcc-------------------------------------e-EEEEEeCCCCEEEeecCC
Q 042146           80 ATIRLWDVPTATSLKTLIGHTNY-------------------------------------V-FCINFNPQSNRIVSDTFN  121 (262)
Q Consensus        80 ~~i~v~d~~~~~~~~~~~~~~~~-------------------------------------v-~~~~~~~~~~~l~~~~~d  121 (262)
                      +.|+.+|.++++.+..+......                                     + ..+++.+...+++.+..+
T Consensus       182 g~v~A~D~~TG~~~W~~~~~~~~~~~~~~p~~~~~~~~~g~~~~g~~tw~g~~~~~gg~~~W~~~a~d~~~g~vy~g~g~  261 (599)
T 1w6s_A          182 GYLTAYDVKTGEQVWRAYATGPDKDLLLASDFNIKNPHYGQKGLGTGTWEGDAWKIGGGTNWGWYAYDPGTNLIYFGTGN  261 (599)
T ss_dssp             CEEEEEETTTCCEEEEEESSSCHHHHTBCTTTTTTCGGGCCTTHHHHTSSTTGGGGCCCCCCSCCEEETTTTEEEEECCC
T ss_pred             CeEEEEECCCCcEEEEEcCCCCccccccccccccccccccccccccccCCCcceecCCCccccceeEeCCCCEEEEeCCC
Confidence            47899999999887665422111                                     0 135677777788777655


Q ss_pred             ----------------CeEEEEECCCCeeeeeeecCCC----------CeeeEEEc-cCC---CEEEEEeCCCeEEEEeC
Q 042146          122 ----------------ETIRIWDIKTGKCLKVLPAHSD----------PVTAIDFN-RDG---TMIVTSSYDGLYRILDA  171 (262)
Q Consensus       122 ----------------g~i~vwd~~~~~~~~~~~~~~~----------~v~~~~~~-~~~---~~l~~~~~dg~i~~~d~  171 (262)
                                      +.|..+|.++++.+..++....          ++. +... .+|   ..++.++.+|.+.++|.
T Consensus       262 ~~p~~~~~r~gd~~y~~sv~Ald~~TG~~~W~~q~~~~d~wd~d~~~~p~l-~d~~~~~G~~~~~v~~~~~~G~l~~lD~  340 (599)
T 1w6s_A          262 PAPWNETMRPGDNKWTMTIFGRDADTGEAKFGYQKTPHDEWDYAGVNVMML-SEQKDKDGKARKLLTHPDRNGIVYTLDR  340 (599)
T ss_dssp             CSCSCGGGSCSCCTTSSEEEEEETTTCCEEEEEESSTTCSSCCCCCCCCEE-EEEECTTSCEEEEEEEECTTSEEEEEET
T ss_pred             CccccCcccCCCccccceEEEEeCCCCceeeEeecCCCccccccCCCccEE-EeccccCCcEEEEEEEECCCcEEEEEEC
Confidence                            3899999999999887764321          111 2221 356   45667778888888887


Q ss_pred             CC
Q 042146          172 ST  173 (262)
Q Consensus       172 ~~  173 (262)
                      .+
T Consensus       341 ~t  342 (599)
T 1w6s_A          341 TD  342 (599)
T ss_dssp             TT
T ss_pred             CC
Confidence            54

>4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus}

Probab=97.87  E-value=0.0024  Score=51.20  Aligned_cols=136  Identities=10%  Similarity=0.110  Sum_probs=80.0

Q ss_pred             ceEEEEEeCC--CCEEEeecCCCeEEEEECCCCeeeeeeecCCCCeeeEEEccCCCEEEEEeCCC-----eEEEEeCC--
Q 042146          102 YVFCINFNPQ--SNRIVSDTFNETIRIWDIKTGKCLKVLPAHSDPVTAIDFNRDGTMIVTSSYDG-----LYRILDAS--  172 (262)
Q Consensus       102 ~v~~~~~~~~--~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg-----~i~~~d~~--  172 (262)
                      ....++++|+  ...|+.+...+.|+.+|+.+++..... ........++++++++ |+.+...+     .+..++..  
T Consensus       140 ~P~gvavd~~s~~g~Lyv~D~~~~I~~id~~~g~v~~~~-~~~~~P~giavd~dG~-lyVad~~~~~~~~gv~~~~~~~~  217 (433)
T 4hw6_A          140 NIWRMMFDPNSNYDDLYWVGQRDAFRHVDFVNQYVDIKT-TNIGQCADVNFTLNGD-MVVVDDQSSDTNTGIYLFTRASG  217 (433)
T ss_dssp             CCCEEEECTTTTTCEEEEECBTSCEEEEETTTTEEEEEC-CCCSCEEEEEECTTCC-EEEEECCSCTTSEEEEEECGGGT
T ss_pred             CCceEEEccccCCCEEEEEeCCCCEEEEECCCCEEEEee-cCCCCccEEEECCCCC-EEEEcCCCCcccceEEEEECCCC
Confidence            4568999984  444544443489999999877755443 3445679999999999 44444321     12222211  


Q ss_pred             -----------C-------C-CccEEEEEcCCCeEEEEecCCCceeeEEeccCCceeEEEEEEecCCCeeEEccccceEE
Q 042146          173 -----------T-------P-NGKFILVGTLDNTLRLWNYSTRKILKTYSGYTNSKYCISSTFSVTNGKYIVSHRDPVIS  233 (262)
Q Consensus       173 -----------~-------~-~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~  233 (262)
                                 .       + ++.++++-..++.|+.+|..++.....+....                    ....-..
T Consensus       218 ~~~~~~~~~~~~P~giavd~~~G~lyv~d~~~~~V~~~d~~~g~~~~~~~~~~--------------------~~~~~~~  277 (433)
T 4hw6_A          218 FTERLSLCNARGAKTCAVHPQNGKIYYTRYHHAMISSYDPATGTLTEEEVMMD--------------------TKGSNFH  277 (433)
T ss_dssp             TCCEEEEEECSSBCCCEECTTTCCEEECBTTCSEEEEECTTTCCEEEEEEECS--------------------CCSSCEE
T ss_pred             eeccccccccCCCCEEEEeCCCCeEEEEECCCCEEEEEECCCCeEEEEEeccC--------------------CCCCccc
Confidence                       1       3 44444455556677777776665522222110                    1112246


Q ss_pred             EEEcCCCCeEEEeeecCCCcEEEEeec
Q 042146          234 VASHPAKNIIASGALDNDRTMKIWTQE  260 (262)
Q Consensus       234 ~~~~p~~~~l~~~~~d~d~~i~iw~~~  260 (262)
                      ++|+|+++.|+.+.. ..+.|+.++++
T Consensus       278 ia~dpdG~~LYvad~-~~~~I~~~~~d  303 (433)
T 4hw6_A          278 IVWHPTGDWAYIIYN-GKHCIYRVDYN  303 (433)
T ss_dssp             EEECTTSSEEEEEET-TTTEEEEEEBC
T ss_pred             EEEeCCCCEEEEEeC-CCCEEEEEeCC
Confidence            899999985555542 46778877654

>3amr_A 3-phytase; beta-propeller, phytate, MYO-inositol hexasulfate, hydrolase-hydrolase inhibitor complex; HET: IHS; 1.25A {Bacillus subtilis} PDB: 3ams_A* 2poo_A 1poo_A 1qlg_A 1h6l_A 1cvm_A

Probab=97.84  E-value=0.0056  Score=47.19  Aligned_cols=154  Identities=10%  Similarity=0.225  Sum_probs=89.4

Q ss_pred             EEEEecCCCccceecccCCcceEEEEEeCC----CC---EEE-eecC--CCeEEEEEC--CCCeeeeeeec------CC-
Q 042146           82 IRLWDVPTATSLKTLIGHTNYVFCINFNPQ----SN---RIV-SDTF--NETIRIWDI--KTGKCLKVLPA------HS-  142 (262)
Q Consensus        82 i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~----~~---~l~-~~~~--dg~i~vwd~--~~~~~~~~~~~------~~-  142 (262)
                      +.+||+ +++.+..+..  +.++.+.+-|.    ++   +++ +.-.  +++|.+|++  .++. +..+..      .. 
T Consensus        52 L~Vydl-~G~~l~~~~~--g~~nnVD~r~~~~l~g~~~dla~as~R~~~~n~l~vf~iDp~~~~-l~~i~~~~~pv~t~~  127 (355)
T 3amr_A           52 LVVYSL-DGKMLHSYNT--GKLNNVDIRYDFPLNGKKVDIAAASNRSEGKNTIEIYAIDGKNGT-LQSMTDPDHPIATAI  127 (355)
T ss_dssp             EEEEET-TSCEEEEECC--SCEEEEEEEEEEEETTEEEEEEEEEECSTTCCEEEEEEECTTTCC-EEECSCTTSCEECCC
T ss_pred             EEEEcC-CCcEEEEccC--CCcccEEEecccccCCceEeEEEEeCCCCCCCeEEEEEECCCCCc-eeeccccccCcCCCC
Confidence            344455 5666666543  44566655552    22   223 3333  578999966  3333 444421      11 


Q ss_pred             CCeeeEEE--ccC-CC-EEEEEeCCCeEEEEeCCC--------------------------CCccEEEEEcCCCeEEEEe
Q 042146          143 DPVTAIDF--NRD-GT-MIVTSSYDGLYRILDAST--------------------------PNGKFILVGTLDNTLRLWN  192 (262)
Q Consensus       143 ~~v~~~~~--~~~-~~-~l~~~~~dg~i~~~d~~~--------------------------~~~~~l~~~~~dg~i~i~d  192 (262)
                      ..+..+++  +|. +. ++++...+|.+..|++..                          +....|+.+-++..|..|+
T Consensus       128 ~~pyGlcly~~~~~g~~yafV~~k~G~~~q~~l~~~~~g~~~~~lVR~f~lgsq~EgcvvDd~~g~Lyv~eEd~GIw~~d  207 (355)
T 3amr_A          128 NEVYGFTLYHSQKTGKYYAMVTGKEGEFEQYELKADKNGYISGKKVRAFKMNSQTEGMAADDEYGRLYIAEEDEAIWKFS  207 (355)
T ss_dssp             SSCCCEEEEECTTTCCEEEEEECSSSEEEEEEEEECTTSCEEEEEEEEEECSSCEEEEEEETTTTEEEEEETTTEEEEEE
T ss_pred             CCeeEEEEEecCCCCcEEEEEECCCCeEEEEEEEeCCCCcccceEEEEecCCCCcceEEEcCCCCeEEEecccceEEEEe
Confidence            45667777  674 43 688888899999988732                          4456777777776666666


Q ss_pred             cC-----CCceeeEEeccCCceeEEEEEEecCCCeeEEccccceEEEEE--cCCCC-eEEEeeecCCCcEEEEeec
Q 042146          193 YS-----TRKILKTYSGYTNSKYCISSTFSVTNGKYIVSHRDPVISVAS--HPAKN-IIASGALDNDRTMKIWTQE  260 (262)
Q Consensus       193 ~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~--~p~~~-~l~~~~~d~d~~i~iw~~~  260 (262)
                      .+     +++.+..+....                    ....+..|+.  .++++ +|++++. .+.+..+|+.+
T Consensus       208 a~p~~~~~~~~v~~~~~g~--------------------l~aDvEGLai~~~~~g~gyLivSsQ-G~~s~~Vydr~  262 (355)
T 3amr_A          208 AEPDGGSNGTVIDRADGRH--------------------LTRDIEGLTIYYAADGKGYLMASSQ-GNSSYAIYDRQ  262 (355)
T ss_dssp             CSTTSCSCCEEEEEBSSSS--------------------BCSCEEEEEEEECGGGCEEEEEEEG-GGTEEEEEESS
T ss_pred             CCcCCCCCceEEEEecCCc--------------------cccCcceEEEEecCCCCEEEEEEcC-CCCEEEEEECC
Confidence            44     233443332100                    2235777777  45555 6666664 46788898874

>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens}

Probab=97.82  E-value=0.013  Score=50.71  Aligned_cols=151  Identities=11%  Similarity=0.011  Sum_probs=80.6

Q ss_pred             cCceEEEEEccC-CCeEEEecCCCeEEEeecCCCCCC-------CCCCCCCC-ccccCCcccccc----ceeEEEEecCC
Q 042146           23 LRAVSYVKFSHD-GRLLTSSSAEKTLLTYSLSSISNF-------DSTPPSPL-QKFTGHEQGISD----LATIRLWDVPT   89 (262)
Q Consensus        23 ~~~v~~~~~~~~-~~~l~s~~~d~~i~iw~~~~~~~~-------~~~~~~~~-~~~~~~~~~v~~----~~~i~v~d~~~   89 (262)
                      ...+..++|.+. +.++++-...+.|+.+++......       ......+. ..+......++.    ...|.+.++..
T Consensus       423 ~~~~~gl~~d~~~~~lY~sD~~~~~I~~~~l~g~~~~~~~~~vi~~~l~~P~GLAvD~~~~~LY~tD~~~~~I~v~~ldG  502 (791)
T 3m0c_C          423 LRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKG  502 (791)
T ss_dssp             CSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTS
T ss_pred             CCceEEEeecccCCeeEEeeccceeEEEEeccCCCCCcceeEEEecCCCCcceeeeeecCCcEEEEecCCCeEEEEeCCC
Confidence            456778999885 445556566788988887652110       00000000 000000001110    11566666643


Q ss_pred             CccceecccCCcceEEEEEeCCCCEEEeec-C-CCeEEEEECCCCeeeeeeecCCCCeeeEEEccCCCEEEEEe-CCCeE
Q 042146           90 ATSLKTLIGHTNYVFCINFNPQSNRIVSDT-F-NETIRIWDIKTGKCLKVLPAHSDPVTAIDFNRDGTMIVTSS-YDGLY  166 (262)
Q Consensus        90 ~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~-dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~dg~i  166 (262)
                      ......+.........|+++|...+|+... . .+.|.+.++........+...-.....|++++.+..|+.+. ..+.|
T Consensus       503 ~~~~~l~~~~l~~P~gIaVDp~~g~LYwtD~g~~~~I~~~~~dG~~~~~lv~~~l~~P~GLavD~~~~~LYwaD~~~~~I  582 (791)
T 3m0c_C          503 VKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVTENIQWPNGITLDLLSGRLYWVDSKLHSI  582 (791)
T ss_dssp             SSEEEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCCEEEEECSSCSCEEEEEEETTTTEEEEEETTTTEE
T ss_pred             CeEEEEEeCCCCCcceEEEecCCCCEEEecCCCCCeEEEEecCCCceEEEEeCCCCCceEEEEecCCCeEEEEeCCCCcE
Confidence            332222222334578999999766555443 2 36899998865443333333335678999998666665554 55678


Q ss_pred             EEEeCCC
Q 042146          167 RILDAST  173 (262)
Q Consensus       167 ~~~d~~~  173 (262)
                      ..+++..
T Consensus       583 ~~~d~dG  589 (791)
T 3m0c_C          583 SSIDVNG  589 (791)
T ss_dssp             EEEETTS
T ss_pred             EEEecCC
Confidence            8888765

>1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1

Probab=97.82  E-value=0.0059  Score=46.73  Aligned_cols=120  Identities=10%  Similarity=0.023  Sum_probs=68.2

Q ss_pred             cCceEEEEEccCCC-eEEEecCCCeEEEeecCCCCCCCCCCCCCCccccCCccccccceeEEEEecCCCccceecccCCc
Q 042146           23 LRAVSYVKFSHDGR-LLTSSSAEKTLLTYSLSSISNFDSTPPSPLQKFTGHEQGISDLATIRLWDVPTATSLKTLIGHTN  101 (262)
Q Consensus        23 ~~~v~~~~~~~~~~-~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~i~v~d~~~~~~~~~~~~~~~  101 (262)
                      ...+..++|++++. .+++-...+.|..+++.....                               .......+.....
T Consensus        29 ~~~p~g~~~d~~~~~ly~~D~~~~~I~~~~~~g~~~-------------------------------~~~~~~~~~~~~~   77 (316)
T 1ijq_A           29 LRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHG-------------------------------VSSYDTVISRDIQ   77 (316)
T ss_dssp             CSSEEEEEEETTTTEEEEEETTTTEEEEEEC---------------------------------------CEEEECSSCS
T ss_pred             CCceEEEEEEeCCCEEEEEECCCCcEEEEECCCCCC-------------------------------CcccEEEEeCCCC
Confidence            44567899998654 444555567777776543100                               0000011111123


Q ss_pred             ceEEEEEeCCCC-EEEeecCCCeEEEEECCCCeeeeeeecCCCCeeeEEEccCCCEEEEEeC-C-CeEEEEeCCC
Q 042146          102 YVFCINFNPQSN-RIVSDTFNETIRIWDIKTGKCLKVLPAHSDPVTAIDFNRDGTMIVTSSY-D-GLYRILDAST  173 (262)
Q Consensus       102 ~v~~~~~~~~~~-~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-d-g~i~~~d~~~  173 (262)
                      ....+++++.+. +.++-...+.|.+.++........+.........++++|.+..|+.+.. . +.|..+++..
T Consensus        78 ~p~glavd~~~~~ly~~d~~~~~I~~~~~~g~~~~~~~~~~~~~P~~iavdp~~g~ly~~d~~~~~~I~~~~~dG  152 (316)
T 1ijq_A           78 APDGLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNG  152 (316)
T ss_dssp             CCCEEEEETTTTEEEEEETTTTEEEEEETTSSSEEEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTS
T ss_pred             CcCEEEEeecCCeEEEEECCCCEEEEEeCCCCceEEEEECCCCCcceEEeCCCCCEEEEEccCCCCeEEEEcCCC
Confidence            456888987544 4455566789999998754433333333356789999986665555543 2 6788877653

>3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli}

Probab=97.81  E-value=0.0045  Score=45.65  Aligned_cols=77  Identities=16%  Similarity=0.302  Sum_probs=56.1

Q ss_pred             ecccCCcceEEEEEeCCCCEE-EeecCCCeEEEEECCCCeeeeeeec-CCCCeeeEEEccCCCEEEEEeCCCeEEEEeCC
Q 042146           95 TLIGHTNYVFCINFNPQSNRI-VSDTFNETIRIWDIKTGKCLKVLPA-HSDPVTAIDFNRDGTMIVTSSYDGLYRILDAS  172 (262)
Q Consensus        95 ~~~~~~~~v~~~~~~~~~~~l-~~~~~dg~i~vwd~~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~~~dg~i~~~d~~  172 (262)
                      .+.+-...+..++++|++..| ++...++.|...|+. ++.+..+.. .......+++.+++.++++.-.++.+.++++.
T Consensus        21 ~l~g~~~~lSGla~~~~~~~L~aV~d~~~~I~~ld~~-g~v~~~i~l~g~~D~EGIa~~~~g~~~vs~E~~~~l~~~~v~   99 (255)
T 3qqz_A           21 EIAGITNNISSLTWSAQSNTLFSTINKPAAIVEMTTN-GDLIRTIPLDFVKDLETIEYIGDNQFVISDERDYAIYVISLT   99 (255)
T ss_dssp             ECTTCCSCEEEEEEETTTTEEEEEEETTEEEEEEETT-CCEEEEEECSSCSSEEEEEECSTTEEEEEETTTTEEEEEEEC
T ss_pred             ECCCcccCcceeEEeCCCCEEEEEECCCCeEEEEeCC-CCEEEEEecCCCCChHHeEEeCCCEEEEEECCCCcEEEEEcC
Confidence            344555679999999976655 457778899999988 877777642 22467888998888776666567778777654

>3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron}

Probab=97.81  E-value=0.013  Score=50.67  Aligned_cols=146  Identities=12%  Similarity=0.094  Sum_probs=79.8

Q ss_pred             cCceEEEEEccCCCeEEEecCCCeEEEeecCCCCCCCCC-----CCCCCcccc-CCcccc--cc-ceeEEEEecCCCccc
Q 042146           23 LRAVSYVKFSHDGRLLTSSSAEKTLLTYSLSSISNFDST-----PPSPLQKFT-GHEQGI--SD-LATIRLWDVPTATSL   93 (262)
Q Consensus        23 ~~~v~~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~-----~~~~~~~~~-~~~~~v--~~-~~~i~v~d~~~~~~~   93 (262)
                      ...|.++...+++. |..|+.++-|..|+..........     ....+..+. .....+  .. ..-|..++..+++..
T Consensus       362 ~~~v~~i~~d~~g~-lWigt~~~Gl~~~~~~~~~~~~~~~~~~~~~~~v~~i~~d~~g~lWigt~~~Gl~~~~~~~~~~~  440 (781)
T 3v9f_A          362 NKVVSSVCDDGQGK-LWIGTDGGGINVFENGKRVAIYNKENRELLSNSVLCSLKDSEGNLWFGTYLGNISYYNTRLKKFQ  440 (781)
T ss_dssp             SSCEEEEEECTTSC-EEEEEBSSCEEEEETTEEEEECC-----CCCSBEEEEEECTTSCEEEEETTEEEEEECSSSCEEE
T ss_pred             CcceEEEEEcCCCC-EEEEeCCCcEEEEECCCCeEEEccCCCCCCCcceEEEEECCCCCEEEEeccCCEEEEcCCCCcEE
Confidence            35689998888876 455665666888886542211110     011111111 111111  11 125667776555432


Q ss_pred             eec--ccCCcceEEEEEeCCCCEEEeecCCCeEEEEECCCCeeeeeeecC-----CCCeeeEEEccCCCEEEEEeCCCeE
Q 042146           94 KTL--IGHTNYVFCINFNPQSNRIVSDTFNETIRIWDIKTGKCLKVLPAH-----SDPVTAIDFNRDGTMIVTSSYDGLY  166 (262)
Q Consensus        94 ~~~--~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~-----~~~v~~~~~~~~~~~l~~~~~dg~i  166 (262)
                      ...  ......|.++...+++.+.+. +. +-|..+|..+++........     ...|.++...++|.+.+ |+.++-+
T Consensus       441 ~~~~~~~~~~~v~~i~~d~~g~lwig-t~-~Gl~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~d~~g~lWi-gt~~~Gl  517 (781)
T 3v9f_A          441 IIELEKNELLDVRVFYEDKNKKIWIG-TH-AGVFVIDLASKKVIHHYDTSNSQLLENFVRSIAQDSEGRFWI-GTFGGGV  517 (781)
T ss_dssp             ECCSTTTCCCCEEEEEECTTSEEEEE-ET-TEEEEEESSSSSCCEEECTTTSSCSCSCEEEEEECTTCCEEE-EESSSCE
T ss_pred             EeccCCCCCCeEEEEEECCCCCEEEE-EC-CceEEEeCCCCeEEecccCcccccccceeEEEEEcCCCCEEE-EEcCCCE
Confidence            211  113467899988887775554 44 45888998876543332211     35789998888887544 4443336


Q ss_pred             EEEeCC
Q 042146          167 RILDAS  172 (262)
Q Consensus       167 ~~~d~~  172 (262)
                      ..||..
T Consensus       518 ~~~~~~  523 (781)
T 3v9f_A          518 GIYTPD  523 (781)
T ss_dssp             EEECTT
T ss_pred             EEEeCC
Confidence            667654

>3pbp_A Nucleoporin NUP82; beta-propeller, mRNA export, mRNP remodelling, nucleocytoplasmic transport, protein transport; HET: PGE; 2.60A {Saccharomyces cerevisiae} PDB: 3tkn_A

Probab=97.81  E-value=0.0051  Score=48.54  Aligned_cols=71  Identities=11%  Similarity=0.133  Sum_probs=47.6

Q ss_pred             ceEEEEEeCCCCEEEeecCCCeEEEEECCCCe------------eeeeeec------CCCCeeeEEEccC---CCEEEEE
Q 042146          102 YVFCINFNPQSNRIVSDTFNETIRIWDIKTGK------------CLKVLPA------HSDPVTAIDFNRD---GTMIVTS  160 (262)
Q Consensus       102 ~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~------------~~~~~~~------~~~~v~~~~~~~~---~~~l~~~  160 (262)
                      .|..+..+|+|++||..+ +..|.|-.+..+.            ....+.-      ...+|..+.|+|-   +..|++-
T Consensus        67 ~i~qlvlSpsG~lLAl~g-~~~V~Vv~LP~~~~~~~~~~~~~~~q~~ty~l~~~~~~~~s~I~qVlWHPl~~~ds~LVVL  145 (452)
T 3pbp_A           67 DTFHVISSTSGDLLCLFN-DNEIFVMEVPWGYSNVEDVSIQDAFQIFHYSIDEEEVGPKSSIKKVLFHPKSYRDSCIVVL  145 (452)
T ss_dssp             TTCEEEECTTSSEEEEEC-SSEEEEEECCTTCSCCCCHHHHHTTEEEEEEGGGCC--CCCCEEEEEECTTBGGGCEEEEE
T ss_pred             ceeEEEECCCCCEEEEec-CCeEEEEEecCccccCcccccccccceeEEEcCCcccCCCCceeEEEeccccCCCCeEEEE
Confidence            567799999999999876 4588888876321            0112221      2567999999994   4466666


Q ss_pred             eCCCeEEEEeCCC
Q 042146          161 SYDGLYRILDAST  173 (262)
Q Consensus       161 ~~dg~i~~~d~~~  173 (262)
                      ..|+.|++||+..
T Consensus       146 tsD~~Ir~yDl~~  158 (452)
T 3pbp_A          146 KEDDTITMFDILN  158 (452)
T ss_dssp             ETTSCEEEEETTC
T ss_pred             ecCCEEEEEEccc
Confidence            6666666666653

>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A

Probab=97.77  E-value=0.001  Score=56.38  Aligned_cols=30  Identities=0%  Similarity=-0.013  Sum_probs=22.3

Q ss_pred             EEEEeCCCCEEEeec-CC-----CeEEEEECCCCee
Q 042146          105 CINFNPQSNRIVSDT-FN-----ETIRIWDIKTGKC  134 (262)
Q Consensus       105 ~~~~~~~~~~l~~~~-~d-----g~i~vwd~~~~~~  134 (262)
                      +++..+++++++.|+ .+     ..+.+||+.+++-
T Consensus       291 s~~~~~dg~iyv~GG~~~~~~~~~~~e~yd~~t~~W  326 (656)
T 1k3i_A          291 SSATMSDGRVFTIGGSWSGGVFEKNGEVYSPSSKTW  326 (656)
T ss_dssp             EEEECTTSCEEEECCCCCSSSCCCCEEEEETTTTEE
T ss_pred             ceEEecCCeEEEEeCcccCCcccccceEeCCCCCcc
Confidence            445567899988888 34     4699999987653

>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L

Probab=97.76  E-value=0.0092  Score=47.31  Aligned_cols=92  Identities=15%  Similarity=0.126  Sum_probs=57.6

Q ss_pred             eEEEEecCCCccceecccCCcceEEEEEeCCCCEE-EeecCCCeEEEEECCCC----eeeeeeecCCCCeeeEEEccC-C
Q 042146           81 TIRLWDVPTATSLKTLIGHTNYVFCINFNPQSNRI-VSDTFNETIRIWDIKTG----KCLKVLPAHSDPVTAIDFNRD-G  154 (262)
Q Consensus        81 ~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l-~~~~~dg~i~vwd~~~~----~~~~~~~~~~~~v~~~~~~~~-~  154 (262)
                      .|+..++......... .....+..++|++.+..| .+-...+.|..+++...    .....+.........+++.+. +
T Consensus        93 ~I~~i~l~~~~~~~~~-~~~~~~~~l~~d~~~~~lywsD~~~~~I~~~~~~g~~~~~~~~~~~~~~~~~p~glavD~~~~  171 (400)
T 3p5b_L           93 EVRKMTLDRSEYTSLI-PNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHS  171 (400)
T ss_dssp             EEEEECTTSCSCEEEE-CSCSCEEEEEEETTTTEEEEEETTTTEEEEEEC------CCCEEEECSSCSCEEEEEEETTTT
T ss_pred             eeEEEccCCcceeEec-cccCcceEEeeeeccCceEEEecCCCeEEEEEcccCCCCCcceEEEeCCCCCcccEEEEecCC
Confidence            6777777655443333 344568899999865555 45456788999998652    222333323456788999884 4


Q ss_pred             CEEEEEeCCCeEEEEeCCC
Q 042146          155 TMIVTSSYDGLYRILDAST  173 (262)
Q Consensus       155 ~~l~~~~~dg~i~~~d~~~  173 (262)
                      +++++-...+.|.+.++..
T Consensus       172 ~lY~~d~~~~~I~~~~~~g  190 (400)
T 3p5b_L          172 NIYWTDSVLGTVSVADTKG  190 (400)
T ss_dssp             EEEEEETTTTEEEEECTTT
T ss_pred             ceEEEECCCCeEEEEeCCC
Confidence            4555555678888888765

>3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B

Probab=97.76  E-value=0.0074  Score=46.22  Aligned_cols=73  Identities=11%  Similarity=0.034  Sum_probs=47.1

Q ss_pred             cceEEEEEeCC-CCEEEeecCCCeEEEEECCCCeee-eeeecCCCCeeeEEEccC-CCEEEEEeCCCeEEEEeCCC
Q 042146          101 NYVFCINFNPQ-SNRIVSDTFNETIRIWDIKTGKCL-KVLPAHSDPVTAIDFNRD-GTMIVTSSYDGLYRILDAST  173 (262)
Q Consensus       101 ~~v~~~~~~~~-~~~l~~~~~dg~i~vwd~~~~~~~-~~~~~~~~~v~~~~~~~~-~~~l~~~~~dg~i~~~d~~~  173 (262)
                      .....++|++. +.++.+-...+.|..+++..+... ..+...-.....+++.+. ++++++-...+.|.++++..
T Consensus        35 ~~~~~ld~d~~~~~lyw~D~~~~~I~r~~~~g~~~~~~~~~~~l~~p~glavd~~~g~ly~~d~~~~~I~~~~~dG  110 (318)
T 3sov_A           35 EDAAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTESVQNVVVSGLLSPDGLACDWLGEKLYWTDSETNRIEVSNLDG  110 (318)
T ss_dssp             EEEEEEEEEGGGTEEEEEETTTTEEEEEETTSSSCCCEEEEECCSCCCEEEEETTTTEEEEEETTTTEEEEEETTS
T ss_pred             CccEEEEEEeCCCEEEEEECCCCcEEEEEccCCCceEEEEcCCCCCccEEEEEcCCCeEEEEECCCCEEEEEECCC
Confidence            34668899985 445556566789999998765321 222222334578888874 44555555677888888764

>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A

Probab=97.75  E-value=0.0017  Score=55.43  Aligned_cols=70  Identities=13%  Similarity=-0.012  Sum_probs=42.7

Q ss_pred             eEEEEEeC-CCCEEEeecCCCeEEEEECCCCeeeeeeecCCCCeeeEEEccCCCEEEEEe-CC-CeEEEEeCC
Q 042146          103 VFCINFNP-QSNRIVSDTFNETIRIWDIKTGKCLKVLPAHSDPVTAIDFNRDGTMIVTSS-YD-GLYRILDAS  172 (262)
Q Consensus       103 v~~~~~~~-~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~d-g~i~~~d~~  172 (262)
                      ...|++.+ .++++++-...+.|.++++........+.........++++|.+..|+.+. .. +.|..+++.
T Consensus       455 P~glavD~~~g~LY~tD~~~~~I~v~d~dg~~~~~l~~~~~~~P~giavDp~~g~ly~td~~~~~~I~~~~~d  527 (699)
T 1n7d_A          455 PDGLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFREQGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLN  527 (699)
T ss_dssp             CCCEECCCSSSBCEECCTTTSCEEEEBSSSCCEEEECCCSSCCCCCEECCSSSSCCEECCCSSSCCEEBCCSS
T ss_pred             cceEEEEeeCCcEEEEeccCCeEEEEecCCCceEEEEeCCCCCcceEEEccCCCcEEEcccCCCCeEEEEeCC
Confidence            44677875 445555556678899999875543333332234567889998655554443 22 677777654

>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L

Probab=97.73  E-value=0.011  Score=46.96  Aligned_cols=73  Identities=12%  Similarity=-0.027  Sum_probs=49.3

Q ss_pred             cceEEEEEeC-CCCEEEeecCCCeEEEEECCCCeeeeeeecCCCCeeeEEEccCCCEEEEEe-C-CCeEEEEeCCC
Q 042146          101 NYVFCINFNP-QSNRIVSDTFNETIRIWDIKTGKCLKVLPAHSDPVTAIDFNRDGTMIVTSS-Y-DGLYRILDAST  173 (262)
Q Consensus       101 ~~v~~~~~~~-~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~-dg~i~~~d~~~  173 (262)
                      .....+++++ .+++.++-...+.|.+.++........+.........|++.|.+..|+.+. . .+.|...++..
T Consensus       159 ~~p~glavD~~~~~lY~~d~~~~~I~~~~~~g~~~~~l~~~~~~~P~~iavdp~~g~ly~td~~~~~~I~~~~~dG  234 (400)
T 3p5b_L          159 QAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNG  234 (400)
T ss_dssp             SCEEEEEEETTTTEEEEEETTTTEEEEECTTTCSEEEEEECSSCCEEEEEEETTTTEEEEEECSSSCCEEEEETTS
T ss_pred             CCcccEEEEecCCceEEEECCCCeEEEEeCCCCceEEEEeCCCCCcceEEEecccCeEEEEeCCCCCEEEEEeCCC
Confidence            4577899998 455556666778999999876544444433344578999999666555554 2 36787777654

>1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1

Probab=97.71  E-value=0.0045  Score=51.65  Aligned_cols=68  Identities=18%  Similarity=0.332  Sum_probs=45.0

Q ss_pred             EEEEeCCCCEEEeecC--------------------C----CeEEEEECCCCeeeeeeec--CC--------CCeeeEEE
Q 042146          105 CINFNPQSNRIVSDTF--------------------N----ETIRIWDIKTGKCLKVLPA--HS--------DPVTAIDF  150 (262)
Q Consensus       105 ~~~~~~~~~~l~~~~~--------------------d----g~i~vwd~~~~~~~~~~~~--~~--------~~v~~~~~  150 (262)
                      .++++|...+++.+..                    |    +.|..+|.++++.+..++.  |.        .++. +..
T Consensus       250 ~~a~d~~~g~vyv~~gn~~~~~~~~r~~~gg~~~~~d~~~~~~v~AlD~~TG~~~W~~q~~~~d~wd~~~~~~p~l-~~~  328 (582)
T 1flg_A          250 SASFDAETNTIIVGAGNPGPWNTWARTAKGGNPHDYDSLYTSGQVGVDPSSGEVKWFYQHTPNDAWDFSGNNELVL-FDY  328 (582)
T ss_dssp             CCEEETTTTEEEEEECCBSSSCGGGGSCTTSCSTTCCCTTCSEEEEECTTTCCEEEEEESSTTCCSCCCCCCCCEE-EEE
T ss_pred             CceEcCCCCEEEEeCCCCCcccCcccccCCCcccccCCcccceEEEEeCCCCCEEEEEeCCCCCcccccCCCCcEE-Eee
Confidence            3567777777776552                    2    6899999999999888753  21        1111 121


Q ss_pred             c-cCCC---EEEEEeCCCeEEEEeCCC
Q 042146          151 N-RDGT---MIVTSSYDGLYRILDAST  173 (262)
Q Consensus       151 ~-~~~~---~l~~~~~dg~i~~~d~~~  173 (262)
                      . .+|+   .++.++.+|.++++|..+
T Consensus       329 ~~~~G~~~~~v~~~~~~G~l~~lD~~t  355 (582)
T 1flg_A          329 KAKDGKIVKATAHADRNGFFYVVDRSN  355 (582)
T ss_dssp             ECSSSCEEEEEEEECTTSEEEEEETTT
T ss_pred             ecCCCCEEEEEEEECCCceEEEEECCC
Confidence            1 3563   677888889998888654

>3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B

Probab=97.63  E-value=0.012  Score=45.03  Aligned_cols=72  Identities=7%  Similarity=-0.068  Sum_probs=46.6

Q ss_pred             ceEEEEEeC-CCCEEEeecCCCeEEEEECCCCeeeeeeecCCCCeeeEEEccCCCEEEEEe--CCCeEEEEeCCC
Q 042146          102 YVFCINFNP-QSNRIVSDTFNETIRIWDIKTGKCLKVLPAHSDPVTAIDFNRDGTMIVTSS--YDGLYRILDAST  173 (262)
Q Consensus       102 ~v~~~~~~~-~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~--~dg~i~~~d~~~  173 (262)
                      ....+++.+ .++++++-...+.|.++++..................+++.|.+..|+.+.  ..+.|..+++..
T Consensus        80 ~p~glavd~~~g~ly~~d~~~~~I~~~~~dG~~~~~l~~~~~~~P~giavdp~~g~ly~td~~~~~~I~r~~~dG  154 (318)
T 3sov_A           80 SPDGLACDWLGEKLYWTDSETNRIEVSNLDGSLRKVLFWQELDQPRAIALDPSSGFMYWTDWGEVPKIERAGMDG  154 (318)
T ss_dssp             CCCEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSSEEEEEEEGGGTEEEEEECSSSCEEEEEETTS
T ss_pred             CccEEEEEcCCCeEEEEECCCCEEEEEECCCCcEEEEEeCCCCCccEEEEeCCCCEEEEEecCCCCEEEEEEcCC
Confidence            456788987 445555656678999999875433222323345568999998655555555  357788877653

>3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron}

Probab=97.61  E-value=0.019  Score=46.67  Aligned_cols=69  Identities=12%  Similarity=0.054  Sum_probs=46.0

Q ss_pred             eEEEEEeC-CCCEEEeecCCCeEEEEECC-------CCee-----------eee-ee-cCCCCeeeEEEccCCCEEEEE-
Q 042146          103 VFCINFNP-QSNRIVSDTFNETIRIWDIK-------TGKC-----------LKV-LP-AHSDPVTAIDFNRDGTMIVTS-  160 (262)
Q Consensus       103 v~~~~~~~-~~~~l~~~~~dg~i~vwd~~-------~~~~-----------~~~-~~-~~~~~v~~~~~~~~~~~l~~~-  160 (262)
                      ...++++| ++.++++-..++.|..+|+.       ++..           ... +. ........|+|+|+++.|+.+ 
T Consensus       249 p~giavdp~~g~LYvtd~~~g~V~r~d~~~~~~~~~tg~~~tp~~~~~~g~~~~l~~~~~~~~p~~ia~~p~G~~lYvaD  328 (496)
T 3kya_A          249 CNGATIHPINGELYFNSYEKGQVFRLDLVDYFKTIKNGGSWDPIVKNNPNTFKQLFTIADPSWEFQIFIHPTGKYAYFGV  328 (496)
T ss_dssp             CCCEEECTTTCCEEEEETTTTEEEEECHHHHHHHHHTTCCCCCBGGGCTTTEEEEEECSSSSCCEEEEECTTSSEEEEEE
T ss_pred             ceEEEEcCCCCeEEEEECCCCEEEEEecccccccccCceeecccccccccccceeEecCCCCCceEEEEcCCCCEEEEEe
Confidence            34678899 55666677788899999987       4443           111 11 122345789999999965555 


Q ss_pred             eCCCeEEEEeC
Q 042146          161 SYDGLYRILDA  171 (262)
Q Consensus       161 ~~dg~i~~~d~  171 (262)
                      .....|+.++.
T Consensus       329 ~~~h~I~kid~  339 (496)
T 3kya_A          329 INNHYFMRSDY  339 (496)
T ss_dssp             TTTTEEEEEEE
T ss_pred             CCCCEEEEEec
Confidence            46678888654

>3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron}

Probab=97.60  E-value=0.016  Score=47.07  Aligned_cols=63  Identities=13%  Similarity=0.213  Sum_probs=42.5

Q ss_pred             ceEEEEEeC-CCCEEE-eecCCCeEEEEECCCCeeeeeeecC---CCCeeeEEE-------ccCCCEEEEEeCCC
Q 042146          102 YVFCINFNP-QSNRIV-SDTFNETIRIWDIKTGKCLKVLPAH---SDPVTAIDF-------NRDGTMIVTSSYDG  164 (262)
Q Consensus       102 ~v~~~~~~~-~~~~l~-~~~~dg~i~vwd~~~~~~~~~~~~~---~~~v~~~~~-------~~~~~~l~~~~~dg  164 (262)
                      ....|+|+| +...|+ +-...+.|++.|+.++.........   ......++|       +++++.|+++...+
T Consensus       140 ~p~~la~dp~~~~~Lyv~~~~~~~i~~ID~~~~~v~~l~~~~~~~~~~p~~ia~~~~~~~~d~~G~~lyvad~~~  214 (496)
T 3kya_A          140 DNGRLAFDPLNKDHLYICYDGHKAIQLIDLKNRMLSSPLNINTIPTNRIRSIAFNKKIEGYADEAEYMIVAIDYD  214 (496)
T ss_dssp             SEEEEEEETTEEEEEEEEEETEEEEEEEETTTTEEEEEECCTTSSCSBEEEEEECCCBTTTBCTTCEEEEEECCC
T ss_pred             CCCEEEEccCCCCEEEEEECCCCeEEEEECCCCEEEEEEccCccccCCCcEEEEeecccccCCCCCEEEEEeCCC
Confidence            467899998 344444 4444467999999887765444322   224789999       99999776666543

>3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron}

Probab=97.57  E-value=0.032  Score=48.30  Aligned_cols=147  Identities=9%  Similarity=0.010  Sum_probs=80.8

Q ss_pred             cCceEEEEEccCCCeEEEecCCCeEEEeecCCCCCCCC-----------CCCCCCccccCCc-ccc--cc-ceeEEEEec
Q 042146           23 LRAVSYVKFSHDGRLLTSSSAEKTLLTYSLSSISNFDS-----------TPPSPLQKFTGHE-QGI--SD-LATIRLWDV   87 (262)
Q Consensus        23 ~~~v~~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~-----------~~~~~~~~~~~~~-~~v--~~-~~~i~v~d~   87 (262)
                      ...|.++...++|. |-.|+.++-|..++.........           .....+..+.... ..+  .. ..-|..++.
T Consensus       312 ~~~v~~i~~D~~g~-lWigt~~~Gl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~i~~d~~g~lWigt~~~Gl~~~~~  390 (781)
T 3v9f_A          312 NASARYIFQDSFNN-IWIGTWGGGINFISNAPPTFHTWSYSPTQMNESSLSNKVVSSVCDDGQGKLWIGTDGGGINVFEN  390 (781)
T ss_dssp             SSCEEEEEECSSCC-EEEEEBSSCEEEECSSCCSCEEEC----CCCSSCCSSSCEEEEEECTTSCEEEEEBSSCEEEEET
T ss_pred             CCeEEEEEEeCCCC-EEEEecCCeEEEeCCCCCcceeeccCccccccCCCCCcceEEEEEcCCCCEEEEeCCCcEEEEEC
Confidence            45699999888887 55666677788887654221100           0011111111111 111  11 113666766


Q ss_pred             CCCccceec---ccCCcceEEEEEeCCCCEEEeecCCCeEEEEECCCCeeeeeee--cCCCCeeeEEEccCCCEEEEEeC
Q 042146           88 PTATSLKTL---IGHTNYVFCINFNPQSNRIVSDTFNETIRIWDIKTGKCLKVLP--AHSDPVTAIDFNRDGTMIVTSSY  162 (262)
Q Consensus        88 ~~~~~~~~~---~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~--~~~~~v~~~~~~~~~~~l~~~~~  162 (262)
                      .++......   ......|.++...+++.+.+ |+.++-|..+|.++++......  .....|.++...+++. |..|+.
T Consensus       391 ~~~~~~~~~~~~~~~~~~v~~i~~d~~g~lWi-gt~~~Gl~~~~~~~~~~~~~~~~~~~~~~v~~i~~d~~g~-lwigt~  468 (781)
T 3v9f_A          391 GKRVAIYNKENRELLSNSVLCSLKDSEGNLWF-GTYLGNISYYNTRLKKFQIIELEKNELLDVRVFYEDKNKK-IWIGTH  468 (781)
T ss_dssp             TEEEEECC-----CCCSBEEEEEECTTSCEEE-EETTEEEEEECSSSCEEEECCSTTTCCCCEEEEEECTTSE-EEEEET
T ss_pred             CCCeEEEccCCCCCCCcceEEEEECCCCCEEE-EeccCCEEEEcCCCCcEEEeccCCCCCCeEEEEEECCCCC-EEEEEC
Confidence            543221111   11335789998887777555 5656678889987775433221  1345788888887776 444555


Q ss_pred             CCeEEEEeCCC
Q 042146          163 DGLYRILDAST  173 (262)
Q Consensus       163 dg~i~~~d~~~  173 (262)
                       +-+..||...
T Consensus       469 -~Gl~~~~~~~  478 (781)
T 3v9f_A          469 -AGVFVIDLAS  478 (781)
T ss_dssp             -TEEEEEESSS
T ss_pred             -CceEEEeCCC
Confidence             4577777543

>3amr_A 3-phytase; beta-propeller, phytate, MYO-inositol hexasulfate, hydrolase-hydrolase inhibitor complex; HET: IHS; 1.25A {Bacillus subtilis} PDB: 3ams_A* 2poo_A 1poo_A 1qlg_A 1h6l_A 1cvm_A

Probab=97.40  E-value=0.016  Score=44.74  Aligned_cols=120  Identities=14%  Similarity=0.324  Sum_probs=73.3

Q ss_pred             CCCEEEeecCCCeEEEEECCCCeeeeeeecCCCCeeeEEEccC----CC---EEEEEe-C--CCeEEEEeCCC-------
Q 042146          111 QSNRIVSDTFNETIRIWDIKTGKCLKVLPAHSDPVTAIDFNRD----GT---MIVTSS-Y--DGLYRILDAST-------  173 (262)
Q Consensus       111 ~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~----~~---~l~~~~-~--dg~i~~~d~~~-------  173 (262)
                      ...+++.....+-+.+||+ +++.+..+..  +.++.+..-|+    ++   ++++.. .  +++|.+|++..       
T Consensus        39 ~~s~ii~t~k~~gL~Vydl-~G~~l~~~~~--g~~nnVD~r~~~~l~g~~~dla~as~R~~~~n~l~vf~iDp~~~~l~~  115 (355)
T 3amr_A           39 QNSKLITTNKKSGLVVYSL-DGKMLHSYNT--GKLNNVDIRYDFPLNGKKVDIAAASNRSEGKNTIEIYAIDGKNGTLQS  115 (355)
T ss_dssp             GGCEEEEEETTTEEEEEET-TSCEEEEECC--SCEEEEEEEEEEEETTEEEEEEEEEECSTTCCEEEEEEECTTTCCEEE
T ss_pred             CccEEEEEcCCCCEEEEcC-CCcEEEEccC--CCcccEEEecccccCCceEeEEEEeCCCCCCCeEEEEEECCCCCceee
Confidence            4456666667788999999 7888888753  56777777763    22   233333 3  57899996531       


Q ss_pred             -----------------------C-Ccc-EEEEEcCCCeEEEEecC-------CCceeeEEeccCCceeEEEEEEecCCC
Q 042146          174 -----------------------P-NGK-FILVGTLDNTLRLWNYS-------TRKILKTYSGYTNSKYCISSTFSVTNG  221 (262)
Q Consensus       174 -----------------------~-~~~-~l~~~~~dg~i~i~d~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~  221 (262)
                                             + .+. ++++...+|.+..|++.       +.+.++++.                  
T Consensus       116 i~~~~~pv~t~~~~pyGlcly~~~~~g~~yafV~~k~G~~~q~~l~~~~~g~~~~~lVR~f~------------------  177 (355)
T 3amr_A          116 MTDPDHPIATAINEVYGFTLYHSQKTGKYYAMVTGKEGEFEQYELKADKNGYISGKKVRAFK------------------  177 (355)
T ss_dssp             CSCTTSCEECCCSSCCCEEEEECTTTCCEEEEEECSSSEEEEEEEEECTTSCEEEEEEEEEE------------------
T ss_pred             ccccccCcCCCCCCeeEEEEEecCCCCcEEEEEECCCCeEEEEEEEeCCCCcccceEEEEec------------------
Confidence                                   1 121 45555555666666552       223444443                  


Q ss_pred             eeEEccccceEEEEEcCCCCeEEEeeecCCCcEEEEeec
Q 042146          222 KYIVSHRDPVISVASHPAKNIIASGALDNDRTMKIWTQE  260 (262)
Q Consensus       222 ~~~~~~~~~v~~~~~~p~~~~l~~~~~d~d~~i~iw~~~  260 (262)
                           ....+..|...+....|+.+-  ++.  -||.+.
T Consensus       178 -----lgsq~EgcvvDd~~g~Lyv~e--Ed~--GIw~~d  207 (355)
T 3amr_A          178 -----MNSQTEGMAADDEYGRLYIAE--EDE--AIWKFS  207 (355)
T ss_dssp             -----CSSCEEEEEEETTTTEEEEEE--TTT--EEEEEE
T ss_pred             -----CCCCcceEEEcCCCCeEEEec--ccc--eEEEEe
Confidence                 334677778888777787776  553  356554

>1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1

Probab=97.38  E-value=0.034  Score=44.15  Aligned_cols=129  Identities=12%  Similarity=0.202  Sum_probs=71.4

Q ss_pred             cCCCeEEEeecCCCCCCCCCCCCCCccccCCccccccc---eeEEEEecCCCccceecccCCcceEEEEEeCCCCEEEee
Q 042146           42 SAEKTLLTYSLSSISNFDSTPPSPLQKFTGHEQGISDL---ATIRLWDVPTATSLKTLIGHTNYVFCINFNPQSNRIVSD  118 (262)
Q Consensus        42 ~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~---~~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~  118 (262)
                      +....|.|-|+.+.......+......+-.....+.++   ..+.++|+++.+.++...- ...|.-=+|-.+ +.|+-.
T Consensus        45 ~~~~~vvIiDl~~~~~~~rrpi~AdsAIMnP~~~iiALrag~~lQiFnle~K~klks~~~-~e~VvfWkWis~-~~l~lV  122 (494)
T 1bpo_A           45 GEQAQVVIIDMNDPSNPIRRPISADSAIMNPASKVIALKAGKTLQIFNIEMKSKMKAHTM-TDDVTFWKWISL-NTVALV  122 (494)
T ss_dssp             TTCCEEEEEETTSTTSCEEEECCCSEEEECSSSSCEEEEETTEEEEEETTTTEEEEEEEC-SSCCCEEEEEET-TEEEEE
T ss_pred             CCCCeEEEEECCCCCcceecccccceeeeCCCCcEEEEecCCeEEEEchHHhhhhcceec-CCCceEEEecCC-CeEEEE
Confidence            34457888888764332111111111111111222222   3899999999888877653 334555566543 344433


Q ss_pred             cCCCeEEEEECCC-CeeeeeeecCC----CCeeeEEEccCCCEEEEEeC-------CCeEEEEeCCC
Q 042146          119 TFNETIRIWDIKT-GKCLKVLPAHS----DPVTAIDFNRDGTMIVTSSY-------DGLYRILDAST  173 (262)
Q Consensus       119 ~~dg~i~vwd~~~-~~~~~~~~~~~----~~v~~~~~~~~~~~l~~~~~-------dg~i~~~d~~~  173 (262)
                      + +..|+-|++.. ..++..+..|.    ..|..-..+++.++++..+-       .|.+.+|....
T Consensus       123 T-~taVyHWsi~~~s~P~kvFdR~~~L~~~QIInY~~d~~~kW~~l~GI~~~~~~v~G~mQLYS~er  188 (494)
T 1bpo_A          123 T-DNAVYHWSMEGESQPVKMFDRHSSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDR  188 (494)
T ss_dssp             C-SSEEEEEESSSSCCCEEEEECCGGGTTCEEEEEEECTTSSEEEEEEEEEETTEEEEEEEEEESTT
T ss_pred             c-CCeeEEecccCCCCchhheecchhcccceEEEEEECCCCCeEEEEeecccCCcccceEEEeeccc
Confidence            3 45899999864 34556665443    35666667777776654432       35566776554

>2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis}

Probab=97.23  E-value=0.042  Score=42.01  Aligned_cols=94  Identities=11%  Similarity=0.083  Sum_probs=67.0

Q ss_pred             ceEEEEE---eCCCCEEEeec-------------CCCeEEEEECC---CCeeeeeeec-------------CCCCeeeEE
Q 042146          102 YVFCINF---NPQSNRIVSDT-------------FNETIRIWDIK---TGKCLKVLPA-------------HSDPVTAID  149 (262)
Q Consensus       102 ~v~~~~~---~~~~~~l~~~~-------------~dg~i~vwd~~---~~~~~~~~~~-------------~~~~v~~~~  149 (262)
                      .+..|.+   .|+++++++..             .+..|..||+.   +++.+....-             -......++
T Consensus        64 ~~sGl~~~~~D~~grL~vv~~~~~af~~~g~~~~g~~~v~~~Dl~~~~tg~~~~~~dL~~~~~~~~~~~g~~~~~~nDva  143 (334)
T 2p9w_A           64 QMSGLSLLTHDNSKRLFAVMKNAKSFNFADQSSHGASSFHSFNLPLSENSKPVWSVNFEKVQDEFEKKAGKRPFGVVQSA  143 (334)
T ss_dssp             EEEEEEESSSSSCCEEEEEEEETTTTCTTSCCSSSCCEEEEEESSCCTTCCCSEEEESHHHHHHHHHHHSSCCEEEEEEE
T ss_pred             eeeEEEEeccCCCCcEEEEEcccccccccccccCCCCEEEEEcCCcCCCCCEEEEecCccccccccccccccccCCceeE
Confidence            3578899   68877776533             25789999999   7877655431             112478999


Q ss_pred             EccCCCEEEEEeCC-CeEEEEeCC----------C---------------CCccEEEEEcCCCeEEEEecCC
Q 042146          150 FNRDGTMIVTSSYD-GLYRILDAS----------T---------------PNGKFILVGTLDNTLRLWNYST  195 (262)
Q Consensus       150 ~~~~~~~l~~~~~d-g~i~~~d~~----------~---------------~~~~~l~~~~~dg~i~i~d~~~  195 (262)
                      ..++|+..++++.- +.|..++..          .               |++..|++....|.|..+|+..
T Consensus       144 vD~~GnaYVt~s~~~~~I~rV~pdG~~~~~~~~~~~~~~~~~G~nGIv~~pdg~~Liv~~~~g~L~~fD~~~  215 (334)
T 2p9w_A          144 QDRDGNSYVAFALGMPAIARVSADGKTVSTFAWESGNGGQRPGYSGITFDPHSNKLIAFGGPRALTAFDVSK  215 (334)
T ss_dssp             ECTTSCEEEEEEESSCEEEEECTTSCCEEEEEECCCCSSSCCSCSEEEEETTTTEEEEESSSSSEEEEECSS
T ss_pred             ECCCCCEEEeCCCCCCeEEEEeCCCCEEeeeeecCCCcccccCcceEEEeCCCCEEEEEcCCCeEEEEcCCC
Confidence            99999988888776 555444432          2               6788788776799999999874

>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A

Probab=97.19  E-value=0.0063  Score=51.99  Aligned_cols=104  Identities=10%  Similarity=0.008  Sum_probs=61.3

Q ss_pred             cceEEEEEeCCCCEEEeec-CC-CeEEEEECCCCeeeeeeecCCCCeeeEEEccCCCEE-EEEeCCCeEEEEeCCC----
Q 042146          101 NYVFCINFNPQSNRIVSDT-FN-ETIRIWDIKTGKCLKVLPAHSDPVTAIDFNRDGTMI-VTSSYDGLYRILDAST----  173 (262)
Q Consensus       101 ~~v~~~~~~~~~~~l~~~~-~d-g~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l-~~~~~dg~i~~~d~~~----  173 (262)
                      .....|+++|.+.+|+.+. .. +.|.++++........+...-.....|+++|++..| ++-+..+.|..+++..    
T Consensus       496 ~~P~giavDp~~g~ly~td~~~~~~I~~~~~dG~~~~~l~~~~l~~PnGlavd~~~~~LY~aD~~~~~I~~~d~dG~~~~  575 (699)
T 1n7d_A          496 SKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRK  575 (699)
T ss_dssp             CCCCCEECCSSSSCCEECCCSSSCCEEBCCSSSCCCCEESCSSCSSCCCEEECTTTCCEEEEETTTTEEEEECSSSSCCE
T ss_pred             CCcceEEEccCCCcEEEcccCCCCeEEEEeCCCCCeeEEEeCCCCCccEEEEeccCCEEEEEecCCCeEEEEccCCCceE
Confidence            3456788998655544433 22 678888775332211121222345789999975544 4445667898888754    


Q ss_pred             -----------C------CccEEEEEcCCCeEEEEecCCCceeeEEec
Q 042146          174 -----------P------NGKFILVGTLDNTLRLWNYSTRKILKTYSG  204 (262)
Q Consensus       174 -----------~------~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~  204 (262)
                                 |      .+.++++....+.|..+|..+++.+..+..
T Consensus       576 ~~~~~~~~~~~P~glavd~~~lywtd~~~~~V~~~d~~~G~~~~~i~~  623 (699)
T 1n7d_A          576 TILEDEKRLAHPFSLAVFEDKVFWTDIINEAIFSANRLTGSDVNLLAE  623 (699)
T ss_dssp             EECCCSSSCSSCCCCEEETTEEEEECSTTTCEEEEETTTEEEEECCCT
T ss_pred             EEEecCCcCCCceEeEEECCEEEEEeCCCCeEEEEEccCCCceEEeec
Confidence                       1      123344444556777787777776666543

>3pbp_A Nucleoporin NUP82; beta-propeller, mRNA export, mRNP remodelling, nucleocytoplasmic transport, protein transport; HET: PGE; 2.60A {Saccharomyces cerevisiae} PDB: 3tkn_A

Probab=97.17  E-value=0.017  Score=45.70  Aligned_cols=127  Identities=20%  Similarity=0.256  Sum_probs=81.9

Q ss_pred             ceEEEEEccCCCeEEEecCCCeEEEeecCCCCCCCCCCCCCCccccCCccccccceeEEEEecCCCccceecccCCcceE
Q 042146           25 AVSYVKFSHDGRLLTSSSAEKTLLTYSLSSISNFDSTPPSPLQKFTGHEQGISDLATIRLWDVPTATSLKTLIGHTNYVF  104 (262)
Q Consensus        25 ~v~~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~i~v~d~~~~~~~~~~~~~~~~v~  104 (262)
                      .|..+..+|+|++||..+ +..|.|-.+........            ...+..--.++-|.+...+     .....+|.
T Consensus        67 ~i~qlvlSpsG~lLAl~g-~~~V~Vv~LP~~~~~~~------------~~~~~~~~q~~ty~l~~~~-----~~~~s~I~  128 (452)
T 3pbp_A           67 DTFHVISSTSGDLLCLFN-DNEIFVMEVPWGYSNVE------------DVSIQDAFQIFHYSIDEEE-----VGPKSSIK  128 (452)
T ss_dssp             TTCEEEECTTSSEEEEEC-SSEEEEEECCTTCSCCC------------CHHHHHTTEEEEEEGGGCC-------CCCCEE
T ss_pred             ceeEEEECCCCCEEEEec-CCeEEEEEecCccccCc------------ccccccccceeEEEcCCcc-----cCCCCcee
Confidence            577899999999999886 46888887752110000            0000011124555553211     11367899


Q ss_pred             EEEEeC---CCCEEEeecCCCeEEEEECCCC--eeeeeee---------cCCCCeeeEEEccCCCEEEEEe--CCCeEEE
Q 042146          105 CINFNP---QSNRIVSDTFNETIRIWDIKTG--KCLKVLP---------AHSDPVTAIDFNRDGTMIVTSS--YDGLYRI  168 (262)
Q Consensus       105 ~~~~~~---~~~~l~~~~~dg~i~vwd~~~~--~~~~~~~---------~~~~~v~~~~~~~~~~~l~~~~--~dg~i~~  168 (262)
                      .+.|||   .+..|++-..|+.|++||+...  ++. .++         .....|.+++|.+++-.|+..+  ..|.|+-
T Consensus       129 qVlWHPl~~~ds~LVVLtsD~~Ir~yDl~~s~~~P~-~L~k~~~~fg~d~~~~ev~S~~Fg~~~lTLYvl~~t~~GDIYA  207 (452)
T 3pbp_A          129 KVLFHPKSYRDSCIVVLKEDDTITMFDILNSQEKPI-VLNKPNNSFGLDARVNDITDLEFSKDGLTLYCLNTTEGGDIFA  207 (452)
T ss_dssp             EEEECTTBGGGCEEEEEETTSCEEEEETTCTTSCCE-EESCCCSEEESCSSCCCEEEEEECTTSSCEEEEECTTSCEEEE
T ss_pred             EEEeccccCCCCeEEEEecCCEEEEEEcccCCCCCc-chhccccccCCCcccceEEEEEEcCCCcEEEEEecCCCCCEEE
Confidence            999999   5667999999999999999752  122 221         1236789999999887777755  7788765


Q ss_pred             Ee
Q 042146          169 LD  170 (262)
Q Consensus       169 ~d  170 (262)
                      ..
T Consensus       208 lc  209 (452)
T 3pbp_A          208 FY  209 (452)
T ss_dssp             ES
T ss_pred             EC
Confidence            54

>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens}

Probab=97.14  E-value=0.033  Score=42.01  Aligned_cols=113  Identities=14%  Similarity=0.200  Sum_probs=60.6

Q ss_pred             eEEEEecCCCc---c--ceecccCCcceEEEEEeCCCCEEEeecCC-----CeEEEEECCCCeeee--eeecCCCCeeeE
Q 042146           81 TIRLWDVPTAT---S--LKTLIGHTNYVFCINFNPQSNRIVSDTFN-----ETIRIWDIKTGKCLK--VLPAHSDPVTAI  148 (262)
Q Consensus        81 ~i~v~d~~~~~---~--~~~~~~~~~~v~~~~~~~~~~~l~~~~~d-----g~i~vwd~~~~~~~~--~~~~~~~~v~~~  148 (262)
                      .+.++|..+.+   .  +..+......-.++.+  ++.+++.|+.+     ..+.+||+.+.+-..  .+......-..+
T Consensus        79 ~~~~~d~~~~~~~~W~~~~~~p~~r~~~~~~~~--~~~lyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~  156 (301)
T 2vpj_A           79 SVECLDYTADEDGVWYSVAPMNVRRGLAGATTL--GDMIYVSGGFDGSRRHTSMERYDPNIDQWSMLGDMQTAREGAGLV  156 (301)
T ss_dssp             CEEEEETTCCTTCCCEEECCCSSCCBSCEEEEE--TTEEEEECCBCSSCBCCEEEEEETTTTEEEEEEECSSCCBSCEEE
T ss_pred             eEEEEECCCCCCCeeEECCCCCCCccceeEEEE--CCEEEEEcccCCCcccceEEEEcCCCCeEEECCCCCCCcccceEE
Confidence            57778876654   2  1122211111122222  56677777643     368899988765322  222111111222


Q ss_pred             EEccCCCEEEEEeCC-----CeEEEEeCCC--------------------CCccEEEEEcCC-----CeEEEEecCCCc
Q 042146          149 DFNRDGTMIVTSSYD-----GLYRILDAST--------------------PNGKFILVGTLD-----NTLRLWNYSTRK  197 (262)
Q Consensus       149 ~~~~~~~~l~~~~~d-----g~i~~~d~~~--------------------~~~~~l~~~~~d-----g~i~i~d~~~~~  197 (262)
                      .  -++++++.|+.+     ..+..||..+                    .++..++.|+.+     ..+.+||+.+.+
T Consensus       157 ~--~~~~iyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~~~~i~v~GG~~~~~~~~~v~~yd~~~~~  233 (301)
T 2vpj_A          157 V--ASGVIYCLGGYDGLNILNSVEKYDPHTGHWTNVTPMATKRSGAGVALLNDHIYVVGGFDGTAHLSSVEAYNIRTDS  233 (301)
T ss_dssp             E--ETTEEEEECCBCSSCBCCCEEEEETTTTEEEEECCCSSCCBSCEEEEETTEEEEECCBCSSSBCCCEEEEETTTTE
T ss_pred             E--ECCEEEEECCCCCCcccceEEEEeCCCCcEEeCCCCCcccccceEEEECCEEEEEeCCCCCcccceEEEEeCCCCc
Confidence            2  266777777654     4588888765                    345666666653     357778877654

>3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A*

Probab=97.04  E-value=0.11  Score=43.64  Aligned_cols=73  Identities=7%  Similarity=-0.051  Sum_probs=46.8

Q ss_pred             cceEEEEEeCCCC-EEEeecCCCeEEEEECCCCeeeeeeecCCCCeeeEEEccCCCEEEEEeC--CCeEEEEeCCC
Q 042146          101 NYVFCINFNPQSN-RIVSDTFNETIRIWDIKTGKCLKVLPAHSDPVTAIDFNRDGTMIVTSSY--DGLYRILDAST  173 (262)
Q Consensus       101 ~~v~~~~~~~~~~-~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~--dg~i~~~d~~~  173 (262)
                      .....+++++.+. +.++-...+.|.+.++........+...-.....|++.|.+..|+.+..  .+.|...++..
T Consensus        84 ~~P~GlAvD~~~~~ly~~d~~~~~I~v~~~dG~~~~~l~~~~l~~P~~Iavdp~~g~ly~tD~g~~~~I~r~~~dG  159 (619)
T 3s94_A           84 LSPDGLACDWLGEKLYWTDSETNRIEVSNLDGSLRKVLFWQELDQPRAIALDPSSGFMYWTDWGEVPKIERAGMDG  159 (619)
T ss_dssp             SCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSCCCCEEEETTTTEEEEEECSSSCEEEEEETTS
T ss_pred             CCcCeEEEEecCCEEEEEeCCCCEEEEEECCCCCEEEEEeCCCCCCceEEEecCCCeEEEeccCCCCEEEEEECCC
Confidence            4578899999555 5556667789999998754332223233445689999997555555542  35666666543

>2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens}

Probab=96.98  E-value=0.031  Score=42.16  Aligned_cols=85  Identities=18%  Similarity=0.300  Sum_probs=47.6

Q ss_pred             CCCEEEeecCCC-----eEEEEECCCCeeeee--eecCCCCeeeEEEccCCCEEEEEeCC-------CeEEEEeCCC---
Q 042146          111 QSNRIVSDTFNE-----TIRIWDIKTGKCLKV--LPAHSDPVTAIDFNRDGTMIVTSSYD-------GLYRILDAST---  173 (262)
Q Consensus       111 ~~~~l~~~~~dg-----~i~vwd~~~~~~~~~--~~~~~~~v~~~~~~~~~~~l~~~~~d-------g~i~~~d~~~---  173 (262)
                      ++.+++.|+.++     .+.+||+.+.+-...  +.........+.  -++++++.|+.+       ..+..||..+   
T Consensus       108 ~~~iyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~--~~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W  185 (302)
T 2xn4_A          108 NGLLYAVGGFDGSTGLSSVEAYNIKSNEWFHVAPMNTRRSSVGVGV--VGGLLYAVGGYDVASRQCLSTVECYNATTNEW  185 (302)
T ss_dssp             TTEEEEEEEECSSCEEEEEEEEETTTTEEEEECCCSSCCBSCEEEE--ETTEEEEECCEETTTTEECCCEEEEETTTTEE
T ss_pred             CCEEEEEcCCCCCccCceEEEEeCCCCeEeecCCCCCcccCceEEE--ECCEEEEEeCCCCCCCccccEEEEEeCCCCcE
Confidence            566667776543     578899887653222  211111112222  256667776542       3578888775   


Q ss_pred             -----------------CCccEEEEEcCC-----CeEEEEecCCCc
Q 042146          174 -----------------PNGKFILVGTLD-----NTLRLWNYSTRK  197 (262)
Q Consensus       174 -----------------~~~~~l~~~~~d-----g~i~i~d~~~~~  197 (262)
                                       .++..++.|+.+     ..+.+||+.+.+
T Consensus       186 ~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~yd~~~~~  231 (302)
T 2xn4_A          186 TYIAEMSTRRSGAGVGVLNNLLYAVGGHDGPLVRKSVEVYDPTTNA  231 (302)
T ss_dssp             EEECCCSSCCBSCEEEEETTEEEEECCBSSSSBCCCEEEEETTTTE
T ss_pred             EECCCCccccccccEEEECCEEEEECCCCCCcccceEEEEeCCCCC
Confidence                             345666666543     357777776543

>2xbg_A YCF48-like protein; photosynthesis, photosystem II, beta-propeller, assembly FAC; 1.50A {Thermosynechococcus elongatus}

Probab=96.92  E-value=0.089  Score=40.34  Aligned_cols=68  Identities=12%  Similarity=0.160  Sum_probs=42.5

Q ss_pred             CCcceEEEEEeCCCCEEEeecCCCeEEEEEC--CCCeeeeeeecCCCCeeeEEEccCCCEEEEEeCCCeEEEE
Q 042146           99 HTNYVFCINFNPQSNRIVSDTFNETIRIWDI--KTGKCLKVLPAHSDPVTAIDFNRDGTMIVTSSYDGLYRIL  169 (262)
Q Consensus        99 ~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~--~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~  169 (262)
                      ....+..+.+.|++.+++.+...+..+-.|-  .+-+.+.  ......+..+.+.+++..+ .++.+|.+++.
T Consensus       161 ~~~~~~~~~~~~~~~~~~~g~~G~~~~S~d~gG~tW~~~~--~~~~~~~~~~~~~~~g~~~-~~~~~G~~~~s  230 (327)
T 2xbg_A          161 AIGVMRNLNRSPSGEYVAVSSRGSFYSTWEPGQTAWEPHN--RTTSRRLHNMGFTPDGRLW-MIVNGGKIAFS  230 (327)
T ss_dssp             CCCCEEEEEECTTSCEEEEETTSSEEEEECTTCSSCEEEE--CCSSSCEEEEEECTTSCEE-EEETTTEEEEE
T ss_pred             CCcceEEEEEcCCCcEEEEECCCcEEEEeCCCCCceeECC--CCCCCccceeEECCCCCEE-EEeCCceEEEe
Confidence            3456888999998888877765444444442  2223322  2345678889998887655 44556776665

>3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB: 1v04_A* 3srg_A*

Probab=96.91  E-value=0.096  Score=40.67  Aligned_cols=33  Identities=9%  Similarity=0.145  Sum_probs=25.4

Q ss_pred             cccceEEEEEcCCCCeEEEeeecCCCcEEEEeec
Q 042146          227 HRDPVISVASHPAKNIIASGALDNDRTMKIWTQE  260 (262)
Q Consensus       227 ~~~~v~~~~~~p~~~~l~~~~~d~d~~i~iw~~~  260 (262)
                      .-...+.++|+||++.|+.+.. ..+.|..|+++
T Consensus       219 ~l~~pNGia~spDg~~lYvadt-~~~~I~~~~~~  251 (355)
T 3sre_A          219 GFDFANGINISPDGKYVYIAEL-LAHKIHVYEKH  251 (355)
T ss_dssp             EESSEEEEEECTTSSEEEEEEG-GGTEEEEEEEC
T ss_pred             CCcccCcceECCCCCEEEEEeC-CCCeEEEEEEC
Confidence            3456789999999988877753 46788888875

>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens}

Probab=96.89  E-value=0.068  Score=40.39  Aligned_cols=61  Identities=11%  Similarity=0.226  Sum_probs=35.7

Q ss_pred             CCCEEEeecCC----CeEEEEECCCCeeeee--eecCCCCeeeEEEccCCCEEEEEeCC------CeEEEEeCCC
Q 042146          111 QSNRIVSDTFN----ETIRIWDIKTGKCLKV--LPAHSDPVTAIDFNRDGTMIVTSSYD------GLYRILDAST  173 (262)
Q Consensus       111 ~~~~l~~~~~d----g~i~vwd~~~~~~~~~--~~~~~~~v~~~~~~~~~~~l~~~~~d------g~i~~~d~~~  173 (262)
                      ++.+++.|+.+    ..+.+||+.+.+-...  +.........+.  -++.+++.|+.+      ..+.+||..+
T Consensus        55 ~~~lyv~GG~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~--~~~~iyv~GG~~~~~~~~~~~~~~d~~~  127 (306)
T 3ii7_A           55 DNVVYILGGSQLFPIKRMDCYNVVKDSWYSKLGPPTPRDSLAACA--AEGKIYTSGGSEVGNSALYLFECYDTRT  127 (306)
T ss_dssp             TTEEEEECCBSSSBCCEEEEEETTTTEEEEEECCSSCCBSCEEEE--ETTEEEEECCBBTTBSCCCCEEEEETTT
T ss_pred             CCEEEEEeCCCCCCcceEEEEeCCCCeEEECCCCCccccceeEEE--ECCEEEEECCCCCCCcEeeeEEEEeCCC
Confidence            56677777654    5788999987753222  211111222222  256777777765      4588888776

>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens}

Probab=96.81  E-value=0.079  Score=39.88  Aligned_cols=85  Identities=13%  Similarity=0.228  Sum_probs=47.5

Q ss_pred             CCCEEEeecCC-----CeEEEEECCCCe---e--eeeeecCCCCeeeEEEccCCCEEEEEeCC-----CeEEEEeCCC--
Q 042146          111 QSNRIVSDTFN-----ETIRIWDIKTGK---C--LKVLPAHSDPVTAIDFNRDGTMIVTSSYD-----GLYRILDAST--  173 (262)
Q Consensus       111 ~~~~l~~~~~d-----g~i~vwd~~~~~---~--~~~~~~~~~~v~~~~~~~~~~~l~~~~~d-----g~i~~~d~~~--  173 (262)
                      ++.+++.|+.+     ..+.+||+.+.+   -  +..+.........+.  .++.+++.|+.+     ..+.+||..+  
T Consensus        62 ~~~l~v~GG~~~~~~~~~~~~~d~~~~~~~~W~~~~~~p~~r~~~~~~~--~~~~lyv~GG~~~~~~~~~~~~~d~~~~~  139 (301)
T 2vpj_A           62 HDRIYVIGGYDGRSRLSSVECLDYTADEDGVWYSVAPMNVRRGLAGATT--LGDMIYVSGGFDGSRRHTSMERYDPNIDQ  139 (301)
T ss_dssp             TTEEEEECCBCSSCBCCCEEEEETTCCTTCCCEEECCCSSCCBSCEEEE--ETTEEEEECCBCSSCBCCEEEEEETTTTE
T ss_pred             CCEEEEEcCCCCCccCceEEEEECCCCCCCeeEECCCCCCCccceeEEE--ECCEEEEEcccCCCcccceEEEEcCCCCe
Confidence            56677777654     368999988765   2  222221112222222  256777777644     3578888765  


Q ss_pred             ------------------CCccEEEEEcCC-----CeEEEEecCCCc
Q 042146          174 ------------------PNGKFILVGTLD-----NTLRLWNYSTRK  197 (262)
Q Consensus       174 ------------------~~~~~l~~~~~d-----g~i~i~d~~~~~  197 (262)
                                        .++..++.|+.+     ..+.+||+.+.+
T Consensus       140 W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~d~~~~~  186 (301)
T 2vpj_A          140 WSMLGDMQTAREGAGLVVASGVIYCLGGYDGLNILNSVEKYDPHTGH  186 (301)
T ss_dssp             EEEEEECSSCCBSCEEEEETTEEEEECCBCSSCBCCCEEEEETTTTE
T ss_pred             EEECCCCCCCcccceEEEECCEEEEECCCCCCcccceEEEEeCCCCc
Confidence                              245555555543     346677766543

>3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A*

Probab=96.75  E-value=0.2  Score=42.12  Aligned_cols=148  Identities=9%  Similarity=-0.018  Sum_probs=78.6

Q ss_pred             CcceEEEEEeCCCCEEE-eecCCCeEEEEECCCCee-eeeeecCCCCeeeEEEccCCC-EEEEEeCCCeEEEEeCCCCC-
Q 042146          100 TNYVFCINFNPQSNRIV-SDTFNETIRIWDIKTGKC-LKVLPAHSDPVTAIDFNRDGT-MIVTSSYDGLYRILDASTPN-  175 (262)
Q Consensus       100 ~~~v~~~~~~~~~~~l~-~~~~dg~i~vwd~~~~~~-~~~~~~~~~~v~~~~~~~~~~-~l~~~~~dg~i~~~d~~~~~-  175 (262)
                      ......++|++.+..|+ +-...+.|..+++..... ...+...-.....+++.+.+. ++++-...+.|.+.++.... 
T Consensus        39 ~~~~~~ld~~~~~~~ly~sD~~~~~I~r~~~~g~~~~~~v~~~~~~~P~GlAvD~~~~~ly~~d~~~~~I~v~~~dG~~~  118 (619)
T 3s94_A           39 LEDAAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTESVQNVVVSGLLSPDGLACDWLGEKLYWTDSETNRIEVSNLDGSLR  118 (619)
T ss_dssp             CSCEEEEEEETTTTEEEEEETTTTEEEEEEC-----CEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSC
T ss_pred             CCceEEEEEEeCCCEEEEEECCCCeEEEEEccCCCceEEEEeCCCCCcCeEEEEecCCEEEEEeCCCCEEEEEECCCCCE
Confidence            34577899999666555 444567899999875532 223333335678999998555 44555567889888876511 


Q ss_pred             ----------ccEEEEEcCCCeEEEEecCCCceeeEEeccCCceeEEEEEEecCCCeeEE-ccccceEEEEEcCCCCeEE
Q 042146          176 ----------GKFILVGTLDNTLRLWNYSTRKILKTYSGYTNSKYCISSTFSVTNGKYIV-SHRDPVISVASHPAKNIIA  244 (262)
Q Consensus       176 ----------~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~v~~~~~~p~~~~l~  244 (262)
                                ..-|+.-..+|.|++=|......+.........            ...+. ..-...+.++++|++..|+
T Consensus       119 ~~l~~~~l~~P~~Iavdp~~g~ly~tD~g~~~~I~r~~~dG~~------------~~~l~~~~~~~P~Glald~~~~~LY  186 (619)
T 3s94_A          119 KVLFWQELDQPRAIALDPSSGFMYWTDWGEVPKIERAGMDGSS------------RFIIINSEIYWPNGLTLDYEEQKLY  186 (619)
T ss_dssp             EEEECSSCSCCCCEEEETTTTEEEEEECSSSCEEEEEETTSCS------------CEEEECSSCSSEEEEEEETTTTEEE
T ss_pred             EEEEeCCCCCCceEEEecCCCeEEEeccCCCCEEEEEECCCCc------------eEEEEeCCCCCCcEEEEEccCCEEE
Confidence                      122333334455555443322222222211110            00111 1234567888888766666


Q ss_pred             EeeecCCCcEEEEeec
Q 042146          245 SGALDNDRTMKIWTQE  260 (262)
Q Consensus       245 ~~~~d~d~~i~iw~~~  260 (262)
                      .+.. ..+.|...+++
T Consensus       187 ~aD~-~~~~I~~~~~d  201 (619)
T 3s94_A          187 WADA-KLNFIHKSNLD  201 (619)
T ss_dssp             EEET-TTCCEEEESSS
T ss_pred             EEeC-CCCeEEEecCC
Confidence            5543 45666666553

>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens}

Probab=96.64  E-value=0.083  Score=39.90  Aligned_cols=113  Identities=10%  Similarity=0.118  Sum_probs=58.1

Q ss_pred             eEEEEecCCCccce--ecccCCcceEEEEEeCCCCEEEeecCC------CeEEEEECCCCeeeee--eecCCCCeeeEEE
Q 042146           81 TIRLWDVPTATSLK--TLIGHTNYVFCINFNPQSNRIVSDTFN------ETIRIWDIKTGKCLKV--LPAHSDPVTAIDF  150 (262)
Q Consensus        81 ~i~v~d~~~~~~~~--~~~~~~~~v~~~~~~~~~~~l~~~~~d------g~i~vwd~~~~~~~~~--~~~~~~~v~~~~~  150 (262)
                      .+.++|..+.+...  .+.........+.+  ++.+++.|+.+      ..+.+||+.+.+-...  +......-..+. 
T Consensus        71 ~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~-  147 (306)
T 3ii7_A           71 RMDCYNVVKDSWYSKLGPPTPRDSLAACAA--EGKIYTSGGSEVGNSALYLFECYDTRTESWHTKPSMLTQRCSHGMVE-  147 (306)
T ss_dssp             EEEEEETTTTEEEEEECCSSCCBSCEEEEE--TTEEEEECCBBTTBSCCCCEEEEETTTTEEEEECCCSSCCBSCEEEE-
T ss_pred             eEEEEeCCCCeEEECCCCCccccceeEEEE--CCEEEEECCCCCCCcEeeeEEEEeCCCCceEeCCCCcCCcceeEEEE-
Confidence            56777776654221  22211111122222  56677777654      4689999987753222  211111112222 


Q ss_pred             ccCCCEEEEEeC---------CCeEEEEeCCC--------------------CCccEEEEEcCC-----CeEEEEecCCC
Q 042146          151 NRDGTMIVTSSY---------DGLYRILDAST--------------------PNGKFILVGTLD-----NTLRLWNYSTR  196 (262)
Q Consensus       151 ~~~~~~l~~~~~---------dg~i~~~d~~~--------------------~~~~~l~~~~~d-----g~i~i~d~~~~  196 (262)
                       -++++++.|+.         -..+.+||..+                    .++..++.|+.+     ..+.+||+.+.
T Consensus       148 -~~~~iyv~GG~~~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~~~~i~v~GG~~~~~~~~~~~~yd~~~~  226 (306)
T 3ii7_A          148 -ANGLIYVCGGSLGNNVSGRVLNSCEVYDPATETWTELCPMIEARKNHGLVFVKDKIFAVGGQNGLGGLDNVEYYDIKLN  226 (306)
T ss_dssp             -ETTEEEEECCEESCTTTCEECCCEEEEETTTTEEEEECCCSSCCBSCEEEEETTEEEEECCEETTEEBCCEEEEETTTT
T ss_pred             -ECCEEEEECCCCCCCCcccccceEEEeCCCCCeEEECCCccchhhcceEEEECCEEEEEeCCCCCCCCceEEEeeCCCC
Confidence             25666666653         34578888766                    244555555533     34667777654


Q ss_pred             c
Q 042146          197 K  197 (262)
Q Consensus       197 ~  197 (262)
                      +
T Consensus       227 ~  227 (306)
T 3ii7_A          227 E  227 (306)
T ss_dssp             E
T ss_pred             c
Confidence            3

>1tl2_A L10, protein (tachylectin-2); animal lectin, horseshoe CRAB, N-acetylglucosamine, beta- propeller, sugar binding protein; HET: NDG; 2.00A {Tachypleus tridentatus} SCOP: b.67.1.1 PDB: 3kif_A* 3kih_A*

Probab=96.62  E-value=0.097  Score=37.53  Aligned_cols=62  Identities=6%  Similarity=0.030  Sum_probs=41.5

Q ss_pred             eEEEEEeCCCCEEEeecCCCeEEEEECCCCeee------eee-ecCCCCeeeEEEccCCCEEEEEeCCCeEEE
Q 042146          103 VFCINFNPQSNRIVSDTFNETIRIWDIKTGKCL------KVL-PAHSDPVTAIDFNRDGTMIVTSSYDGLYRI  168 (262)
Q Consensus       103 v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~------~~~-~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~  168 (262)
                      ..++.|.|+|.+.++  .||.|+-++..+...-      ..+ ..-=..+..|.+.|+|.+.++.  |+.++-
T Consensus        90 F~a~~fD~~G~LYav--~dG~iyr~~pP~~~~~~Wl~~a~~vg~~gw~~~~~lff~p~G~Lyav~--dg~lyr  158 (236)
T 1tl2_A           90 FQFLFFDPNGYLYAV--SKDKLYKASPPQSDTDNWIARATEVGSGGWSGFKFLFFHPNGYLYAVH--GQQFYK  158 (236)
T ss_dssp             CSEEEECTTSCEEEE--ETTEEEEESCCCSTTCCHHHHSEEEECSSGGGEEEEEECTTSCEEEEE--TTEEEE
T ss_pred             ceEEEECCCCCEEEe--CCCEEEEeCCCcCCCCceeccccEeccCCCCceEEEEECCCceEEEEe--CCcEEe
Confidence            467899999998888  5699988876332110      111 1112467999999999877776  777543

>3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB: 1v04_A* 3srg_A*

Probab=96.60  E-value=0.17  Score=39.25  Aligned_cols=69  Identities=10%  Similarity=0.085  Sum_probs=47.4

Q ss_pred             cceEEEEEeCCCCEEEeec-----------------CCCeEEEEECCCCeeeeeeecCCCCeeeEEEccCCCEEEEEe-C
Q 042146          101 NYVFCINFNPQSNRIVSDT-----------------FNETIRIWDIKTGKCLKVLPAHSDPVTAIDFNRDGTMIVTSS-Y  162 (262)
Q Consensus       101 ~~v~~~~~~~~~~~l~~~~-----------------~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~  162 (262)
                      ...+.+.+.++|.+.++..                 ..|.|..+|..  +. ..+...-..-+.++|+||++.|+.+. .
T Consensus       165 ~~pND~~v~~~G~fyvt~~~~ftd~~~~~~e~~~~~~~g~vyr~d~~--~~-~~~~~~l~~pNGia~spDg~~lYvadt~  241 (355)
T 3sre_A          165 PSVNDIVAVGPEHFYATNDHYFIDPYLKSWEMHLGLAWSFVTYYSPN--DV-RVVAEGFDFANGINISPDGKYVYIAELL  241 (355)
T ss_dssp             SSEEEEEEEETTEEEEEESCSCSSHHHHHHHHHTTCCCEEEEEECTT--CC-EEEEEEESSEEEEEECTTSSEEEEEEGG
T ss_pred             CCCceEEEeCCCCEEecCCcEeCCcccccchhhccCCccEEEEEECC--eE-EEeecCCcccCcceECCCCCEEEEEeCC
Confidence            4578999999998777654                 13566666653  22 22222234568999999998777665 5


Q ss_pred             CCeEEEEeCC
Q 042146          163 DGLYRILDAS  172 (262)
Q Consensus       163 dg~i~~~d~~  172 (262)
                      .+.|..|++.
T Consensus       242 ~~~I~~~~~~  251 (355)
T 3sre_A          242 AHKIHVYEKH  251 (355)
T ss_dssp             GTEEEEEEEC
T ss_pred             CCeEEEEEEC
Confidence            7889999876

>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A

Probab=96.53  E-value=0.28  Score=45.16  Aligned_cols=128  Identities=11%  Similarity=0.175  Sum_probs=72.3

Q ss_pred             CCCeEEEeecCCCCCCCCCCCCCCccccCCcccccc---ceeEEEEecCCCccceecccCCcceEEEEEeCCCCEEEeec
Q 042146           43 AEKTLLTYSLSSISNFDSTPPSPLQKFTGHEQGISD---LATIRLWDVPTATSLKTLIGHTNYVFCINFNPQSNRIVSDT  119 (262)
Q Consensus        43 ~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~---~~~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~  119 (262)
                      ...+|.|-|+.+.......+......+-.....|..   -..+.++|+++.+.++...- ...|.-=+|-.. +.|+-.+
T Consensus        46 ~~~~vvIidl~~~~~~~rrpi~AdsAIMnP~~~iiALrag~~lQiFnl~~k~klks~~~-~e~VvfWkWis~-~~l~lVT  123 (1630)
T 1xi4_A           46 EQAQVVIIDMNDPSNPIRRPISADSAIMNPASKVIALKAGKTLQIFNIEMKSKMKAHTM-TDDVTFWKWISL-NTVALVT  123 (1630)
T ss_pred             CCceEEEEECCCCCCcccccccchhhccCCCcceEEEecCCeEEEeehHHhhhhccccc-CCCceEEEecCC-CeeEEEc
Confidence            344788888876443221111111111111122222   23899999998887776553 345555566543 3343333


Q ss_pred             CCCeEEEEECCC-CeeeeeeecC----CCCeeeEEEccCCCEEEEEe-------CCCeEEEEeCCC
Q 042146          120 FNETIRIWDIKT-GKCLKVLPAH----SDPVTAIDFNRDGTMIVTSS-------YDGLYRILDAST  173 (262)
Q Consensus       120 ~dg~i~vwd~~~-~~~~~~~~~~----~~~v~~~~~~~~~~~l~~~~-------~dg~i~~~d~~~  173 (262)
                       +..|+-|++.. ..++..+..|    ...|..-..+++.++++..+       ..|.+.+|....
T Consensus       124 -~~aVyHW~~~~~s~P~k~fdR~~~L~~~QIinY~~d~~~kW~~l~gi~~~~~~v~G~mQLyS~er  188 (1630)
T 1xi4_A          124 -DNAVYHWSMEGESQPVKMFDRHSSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDR  188 (1630)
T ss_pred             -CCeEEEeccCCCCccHHHHhcchhcccCeeEEeeeCCCCCeEEEEeeccCCCcccceeeeeeccc
Confidence             45899999963 3455555444    34677777778888766443       347788887665

>4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens}

Probab=96.52  E-value=0.1  Score=39.66  Aligned_cols=85  Identities=12%  Similarity=0.146  Sum_probs=47.6

Q ss_pred             CCCEEEeecCC--------CeEEEEECCCCeeee--eeecCCCCeeeEEEccCCCEEEEEeC-C-----CeEEEEeCCC-
Q 042146          111 QSNRIVSDTFN--------ETIRIWDIKTGKCLK--VLPAHSDPVTAIDFNRDGTMIVTSSY-D-----GLYRILDAST-  173 (262)
Q Consensus       111 ~~~~l~~~~~d--------g~i~vwd~~~~~~~~--~~~~~~~~v~~~~~~~~~~~l~~~~~-d-----g~i~~~d~~~-  173 (262)
                      ++.+++.|+.+        ..+.+||+.+.+-..  .+...... .+++ ..++++++.|+. +     ..+.+||..+ 
T Consensus        98 ~~~lyv~GG~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~-~~~~-~~~~~iyv~GG~~~~~~~~~~~~~yd~~~~  175 (315)
T 4asc_A           98 LNSIYVVGGREIKDGERCLDSVMCYDRLSFKWGESDPLPYVVYG-HTVL-SHMDLVYVIGGKGSDRKCLNKMCVYDPKKF  175 (315)
T ss_dssp             TTEEEEECCEESSTTCCBCCCEEEEETTTTEEEECCCCSSCCBS-CEEE-EETTEEEEECCBCTTSCBCCCEEEEETTTT
T ss_pred             CCEEEEEeCCcCCCCCcccceEEEECCCCCcEeECCCCCCcccc-eeEE-EECCEEEEEeCCCCCCcccceEEEEeCCCC
Confidence            56666666632        358899998764322  12111111 1222 235667777775 2     4688888776 


Q ss_pred             -------------------CCccEEEEEcCCC-----eEEEEecCCCc
Q 042146          174 -------------------PNGKFILVGTLDN-----TLRLWNYSTRK  197 (262)
Q Consensus       174 -------------------~~~~~l~~~~~dg-----~i~i~d~~~~~  197 (262)
                                         .++..++.|+.++     .+.+||+.+.+
T Consensus       176 ~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~yd~~~~~  223 (315)
T 4asc_A          176 EWKELAPMQTARSLFGATVHDGRIIVAAGVTDTGLTSSAEVYSITDNK  223 (315)
T ss_dssp             EEEECCCCSSCCBSCEEEEETTEEEEEEEECSSSEEEEEEEEETTTTE
T ss_pred             eEEECCCCCCchhceEEEEECCEEEEEeccCCCCccceEEEEECCCCe
Confidence                               2455666665443     46677776543

>1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A

Probab=96.44  E-value=0.11  Score=39.30  Aligned_cols=113  Identities=8%  Similarity=0.052  Sum_probs=59.3

Q ss_pred             eEEEEecCCCccce--ecccCCcceEEEEEeCCCCEEEeecCC-----CeEEEEECCCCeeeee--eecCCCCeeeEEEc
Q 042146           81 TIRLWDVPTATSLK--TLIGHTNYVFCINFNPQSNRIVSDTFN-----ETIRIWDIKTGKCLKV--LPAHSDPVTAIDFN  151 (262)
Q Consensus        81 ~i~v~d~~~~~~~~--~~~~~~~~v~~~~~~~~~~~l~~~~~d-----g~i~vwd~~~~~~~~~--~~~~~~~v~~~~~~  151 (262)
                      .+.++|..+.+...  .+.........+.+  ++++++.|+.+     ..+.+||+.+.+-...  +......-..+.+ 
T Consensus        91 ~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~-  167 (308)
T 1zgk_A           91 ALDCYNPMTNQWSPCAPMSVPRNRIGVGVI--DGHIYAVGGSHGCIHHNSVERYEPERDEWHLVAPMLTRRIGVGVAVL-  167 (308)
T ss_dssp             CEEEEETTTTEEEECCCCSSCCBTCEEEEE--TTEEEEECCEETTEECCCEEEEETTTTEEEECCCCSSCCBSCEEEEE-
T ss_pred             eEEEECCCCCeEeECCCCCcCccccEEEEE--CCEEEEEcCCCCCcccccEEEECCCCCeEeECCCCCccccceEEEEE-
Confidence            57777876654221  12211111222222  56677776643     3688899887653221  2111112222222 


Q ss_pred             cCCCEEEEEeCC-----CeEEEEeCCC--------------------CCccEEEEEcCC-----CeEEEEecCCCc
Q 042146          152 RDGTMIVTSSYD-----GLYRILDAST--------------------PNGKFILVGTLD-----NTLRLWNYSTRK  197 (262)
Q Consensus       152 ~~~~~l~~~~~d-----g~i~~~d~~~--------------------~~~~~l~~~~~d-----g~i~i~d~~~~~  197 (262)
                       ++.+++.|+.+     ..+..||..+                    .++..++.|+.+     ..+.+||+.+.+
T Consensus       168 -~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~v~~yd~~~~~  242 (308)
T 1zgk_A          168 -NRLLYAVGGFDGTNRLNSAECYYPERNEWRMITAMNTIRSGAGVCVLHNCIYAAGGYDGQDQLNSVERYDVETET  242 (308)
T ss_dssp             -TTEEEEECCBCSSCBCCCEEEEETTTTEEEECCCCSSCCBSCEEEEETTEEEEECCBCSSSBCCCEEEEETTTTE
T ss_pred             -CCEEEEEeCCCCCCcCceEEEEeCCCCeEeeCCCCCCccccceEEEECCEEEEEeCCCCCCccceEEEEeCCCCc
Confidence             56777777654     4588888765                    245556666543     457777776543

>2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens}

Probab=96.43  E-value=0.18  Score=37.88  Aligned_cols=61  Identities=13%  Similarity=0.203  Sum_probs=34.4

Q ss_pred             CCCEEEeecCC-----CeEEEEECCCCeeee--eeecCCCCeeeEEEccCCCEEEEEeCCC-----eEEEEeCCC
Q 042146          111 QSNRIVSDTFN-----ETIRIWDIKTGKCLK--VLPAHSDPVTAIDFNRDGTMIVTSSYDG-----LYRILDAST  173 (262)
Q Consensus       111 ~~~~l~~~~~d-----g~i~vwd~~~~~~~~--~~~~~~~~v~~~~~~~~~~~l~~~~~dg-----~i~~~d~~~  173 (262)
                      ++.+++.|+.+     ..+.+||+.+.+-..  .+.........+.  -++.+++.|+.++     .+.+||..+
T Consensus        61 ~~~lyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~--~~~~iyv~GG~~~~~~~~~~~~~d~~~  133 (302)
T 2xn4_A           61 AGLVFAVGGFNGSLRVRTVDSYDPVKDQWTSVANMRDRRSTLGAAV--LNGLLYAVGGFDGSTGLSSVEAYNIKS  133 (302)
T ss_dssp             TTEEEEESCBCSSSBCCCEEEEETTTTEEEEECCCSSCCBSCEEEE--ETTEEEEEEEECSSCEEEEEEEEETTT
T ss_pred             CCEEEEEeCcCCCccccceEEECCCCCceeeCCCCCccccceEEEE--ECCEEEEEcCCCCCccCceEEEEeCCC
Confidence            56677777654     358899988765322  2221111222222  2567777777553     477888765

>4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A*

Probab=96.43  E-value=0.35  Score=40.81  Aligned_cols=115  Identities=9%  Similarity=-0.012  Sum_probs=67.0

Q ss_pred             CceEEEEEccCCCeE-EEecCCCeEEEeecCCCCCCCCCCCCCCccccCCccccccceeEEEEecCCCccceecccCCcc
Q 042146           24 RAVSYVKFSHDGRLL-TSSSAEKTLLTYSLSSISNFDSTPPSPLQKFTGHEQGISDLATIRLWDVPTATSLKTLIGHTNY  102 (262)
Q Consensus        24 ~~v~~~~~~~~~~~l-~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~i~v~d~~~~~~~~~~~~~~~~  102 (262)
                      ..+..++|++.+..| .+-..++.|..++++.                                   ......+......
T Consensus        37 ~~~~~l~~d~~~~~lywtD~~~~~I~r~~~~g-----------------------------------~~~~~v~~~g~~~   81 (628)
T 4a0p_A           37 KEASALDFDVTDNRIYWTDISLKTISRAFMNG-----------------------------------SALEHVVEFGLDY   81 (628)
T ss_dssp             SCEEEEEEETTTTEEEEEETTTTEEEEEETTS-----------------------------------CSCEEEECSSCSC
T ss_pred             CceEEEEEECCCCEEEEEECCCCeEEEEECCC-----------------------------------CCcEEEEeCCCCC
Confidence            457789999865544 4445567777765532                                   1111111111234


Q ss_pred             eEEEEEeCCCC-EEEeecCCCeEEEEECCCCeeeeeeecCCCCeeeEEEccCCCEEEEEe--CCCeEEEEeCCC
Q 042146          103 VFCINFNPQSN-RIVSDTFNETIRIWDIKTGKCLKVLPAHSDPVTAIDFNRDGTMIVTSS--YDGLYRILDAST  173 (262)
Q Consensus       103 v~~~~~~~~~~-~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~--~dg~i~~~d~~~  173 (262)
                      ...+++++.+. +.++-...+.|.+.++........+...-.....|++.|....|+.+.  ..+.|...++..
T Consensus        82 P~GlAvD~~~~~LY~tD~~~~~I~v~~~dG~~~~~l~~~~l~~P~~iavdp~~G~lY~tD~g~~~~I~r~~~dG  155 (628)
T 4a0p_A           82 PEGMAVDWLGKNLYWADTGTNRIEVSKLDGQHRQVLVWKDLDSPRALALDPAEGFMYWTEWGGKPKIDRAAMDG  155 (628)
T ss_dssp             CCEEEEETTTTEEEEEETTTTEEEEEETTSTTCEEEECSSCCCEEEEEEETTTTEEEEEECSSSCEEEEEETTS
T ss_pred             cceEEEEeCCCEEEEEECCCCEEEEEecCCCcEEEEEeCCCCCcccEEEccCCCeEEEeCCCCCCEEEEEeCCC
Confidence            56788987544 445556678999999865432222223334568999998555555554  246677776554

>4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A*

Probab=96.38  E-value=0.37  Score=40.61  Aligned_cols=147  Identities=10%  Similarity=0.026  Sum_probs=79.7

Q ss_pred             cceEEEEEeCCCCEE-EeecCCCeEEEEECCCCeeeeeeecCCCCeeeEEEccCCCEE-EEEeCCCeEEEEeCCCC----
Q 042146          101 NYVFCINFNPQSNRI-VSDTFNETIRIWDIKTGKCLKVLPAHSDPVTAIDFNRDGTMI-VTSSYDGLYRILDASTP----  174 (262)
Q Consensus       101 ~~v~~~~~~~~~~~l-~~~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l-~~~~~dg~i~~~d~~~~----  174 (262)
                      ..+..++|++.+..+ .+-..++.|..+++........+.........+++.+.+..| ++-...+.|.+.++...    
T Consensus        37 ~~~~~l~~d~~~~~lywtD~~~~~I~r~~~~g~~~~~v~~~g~~~P~GlAvD~~~~~LY~tD~~~~~I~v~~~dG~~~~~  116 (628)
T 4a0p_A           37 KEASALDFDVTDNRIYWTDISLKTISRAFMNGSALEHVVEFGLDYPEGMAVDWLGKNLYWADTGTNRIEVSKLDGQHRQV  116 (628)
T ss_dssp             SCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSTTCEE
T ss_pred             CceEEEEEECCCCEEEEEECCCCeEEEEECCCCCcEEEEeCCCCCcceEEEEeCCCEEEEEECCCCEEEEEecCCCcEEE
Confidence            457799999965555 455667899999987554433333333456788998755544 44455678888887541    


Q ss_pred             -------CccEEEEEcCCCeEEEEecCCCceeeEEeccCCceeEEEEEEecCCCeeEEccccceEEEEEcCCCCeEEEee
Q 042146          175 -------NGKFILVGTLDNTLRLWNYSTRKILKTYSGYTNSKYCISSTFSVTNGKYIVSHRDPVISVASHPAKNIIASGA  247 (262)
Q Consensus       175 -------~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~  247 (262)
                             ...-|+.....|.|++-|......+..+......            ...+...-.....+++++++..|+.+.
T Consensus       117 l~~~~l~~P~~iavdp~~G~lY~tD~g~~~~I~r~~~dG~~------------~~~l~~~~~~P~GlalD~~~~~LY~aD  184 (628)
T 4a0p_A          117 LVWKDLDSPRALALDPAEGFMYWTEWGGKPKIDRAAMDGSE------------RTTLVPNVGRANGLTIDYAKRRLYWTD  184 (628)
T ss_dssp             EECSSCCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCS------------CEEEECSCSSEEEEEEETTTTEEEEEE
T ss_pred             EEeCCCCCcccEEEccCCCeEEEeCCCCCCEEEEEeCCCCc------------eEEEECCCCCcceEEEccccCEEEEEE
Confidence                   1122333334555555443322222222211111            111111334567777777666555554


Q ss_pred             ecCCCcEEEEeec
Q 042146          248 LDNDRTMKIWTQE  260 (262)
Q Consensus       248 ~d~d~~i~iw~~~  260 (262)
                      . ..+.|...+++
T Consensus       185 ~-~~~~I~~~d~d  196 (628)
T 4a0p_A          185 L-DTNLIESSNML  196 (628)
T ss_dssp             T-TTTEEEEEETT
T ss_pred             C-CCCEEEEEcCC
Confidence            2 35566665543

>2be1_A Serine/threonine-protein kinase/endoribonuclease; transcription; 2.98A {Saccharomyces cerevisiae}

Probab=96.33  E-value=0.018  Score=44.33  Aligned_cols=93  Identities=11%  Similarity=0.173  Sum_probs=66.2

Q ss_pred             CEEEeecCCCeEEEEECCCCeeeeeeecC-CCCeeeEEEc--c-CCCEEEEE-eCCCeEEEEeCCC--------------
Q 042146          113 NRIVSDTFNETIRIWDIKTGKCLKVLPAH-SDPVTAIDFN--R-DGTMIVTS-SYDGLYRILDAST--------------  173 (262)
Q Consensus       113 ~~l~~~~~dg~i~vwd~~~~~~~~~~~~~-~~~v~~~~~~--~-~~~~l~~~-~~dg~i~~~d~~~--------------  173 (262)
                      ..++.++.||.|.-.|.++|+....++.. ..++....-.  + ++..++.. +.||.|..++...              
T Consensus        11 ~~V~v~t~dG~l~Ald~~tG~~~W~~~~~~~~p~~~~~~~~~~~~~~~~vv~p~~dG~l~a~~~~~G~~~~~~~~~~lv~   90 (339)
T 2be1_A           11 DILIAADVEGGLHAVDRRNGHIIWSIEPENFQPLIEIQEPSRLETYETLIIEPFGDGNIYYFNAHQGLQKLPLSIRQLVS   90 (339)
T ss_dssp             EEEEEEETTSCEEEEETTTTEEEEEECGGGSCCSEECCCSCTTTSSEEEEECCSTTTEEEEEETTTEEEEEEEEHHHHHT
T ss_pred             CEEEEEeCCCeEEEEECCCCcEEEEecCCccCCcEEecCCccccCCcEEEEEECCCCEEEEEECCCCcEEeeecccccee
Confidence            46888999999999999999999888653 1222221100  1 22333333 5788888777654              


Q ss_pred             ----C--------------CccEEEEEcCCCeEEEEecCCCceeeEEecc
Q 042146          174 ----P--------------NGKFILVGTLDNTLRLWNYSTRKILKTYSGY  205 (262)
Q Consensus       174 ----~--------------~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~  205 (262)
                          .              .+..+++|+.+|.+.-.|+++|+.+..+...
T Consensus        91 ~SP~~~~~~pvv~~~~~~~~~g~Vy~Gs~~g~l~ald~~tG~~~W~~~~~  140 (339)
T 2be1_A           91 TSPLHLKTNIVVNDSGKIVEDEKVYTGSMRTIMYTINMLNGEIISAFGPG  140 (339)
T ss_dssp             TCSEEEECC----------CCEEEEECEEEEEEEEEETTTCCEEEEESTT
T ss_pred             ccccccCCCceeecccccccCCEEEEEecCCEEEEEECCCCcEEEEEecC
Confidence                1              5677899999999999999999999988754

>1tl2_A L10, protein (tachylectin-2); animal lectin, horseshoe CRAB, N-acetylglucosamine, beta- propeller, sugar binding protein; HET: NDG; 2.00A {Tachypleus tridentatus} SCOP: b.67.1.1 PDB: 3kif_A* 3kih_A*

Probab=96.21  E-value=0.15  Score=36.58  Aligned_cols=67  Identities=10%  Similarity=0.022  Sum_probs=44.3

Q ss_pred             ceEEEEEeCCCCEEEeecCCCeEEEEECCCCee------eeeeec-CCCCeeeEEEccCCCEEEEEeCCCeEEEEeCC
Q 042146          102 YVFCINFNPQSNRIVSDTFNETIRIWDIKTGKC------LKVLPA-HSDPVTAIDFNRDGTMIVTSSYDGLYRILDAS  172 (262)
Q Consensus       102 ~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~------~~~~~~-~~~~v~~~~~~~~~~~l~~~~~dg~i~~~d~~  172 (262)
                      .+..++|+|++.+.++  .+|.+.-.+..+...      -..+-. --....++.|.|+|.+.++  .||.|+-++-.
T Consensus        42 ~~~~laf~P~G~LYaV--~~G~Ly~~~~~t~~~~~W~~s~t~IG~~Gw~~F~a~~fD~~G~LYav--~dG~iyr~~pP  115 (236)
T 1tl2_A           42 NFKFLFLSPGGELYGV--LNDKIYKGTPPTHDNDNWMGRAKKIGNGGWNQFQFLFFDPNGYLYAV--SKDKLYKASPP  115 (236)
T ss_dssp             TCSEEEECTTSCEEEE--ETTEEEEESCCCSTTCCHHHHCEEEECSCGGGCSEEEECTTSCEEEE--ETTEEEEESCC
T ss_pred             cceeEEECCCccEEEE--eCCeEEEECCCCCCcccccccccEecccccccceEEEECCCCCEEEe--CCCEEEEeCCC
Confidence            5669999998886666  678877777644211      111210 0112478999999988777  56999888763

>2be1_A Serine/threonine-protein kinase/endoribonuclease; transcription; 2.98A {Saccharomyces cerevisiae}

Probab=96.16  E-value=0.31  Score=37.54  Aligned_cols=89  Identities=12%  Similarity=0.091  Sum_probs=56.4

Q ss_pred             CCCEEEeecCCCeEEEEECCCCeeeeeeecCC--CC-----eeeEEEc-----cCCCEEEEEeCCCeEEE-------EeC
Q 042146          111 QSNRIVSDTFNETIRIWDIKTGKCLKVLPAHS--DP-----VTAIDFN-----RDGTMIVTSSYDGLYRI-------LDA  171 (262)
Q Consensus       111 ~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~--~~-----v~~~~~~-----~~~~~l~~~~~dg~i~~-------~d~  171 (262)
                      .+..+++|+.+|.+...|+++|+.+.++....  +.     ..|....     ..+..++.+..+..+.+       |..
T Consensus       110 ~~g~Vy~Gs~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~~e~~~~~~d~~~d~~~~~v~ig~~~y~v~~~~~sG~~W~~  189 (339)
T 2be1_A          110 EDEKVYTGSMRTIMYTINMLNGEIISAFGPGSKNGYFGSQSVDCSPEEKIKLQECENMIVIGKTIFELGIHSYDGASYNV  189 (339)
T ss_dssp             CCEEEEECEEEEEEEEEETTTCCEEEEESTTCBCC--------------------CCEEEEEEEEEECEECCTTSCCCCC
T ss_pred             cCCEEEEEecCCEEEEEECCCCcEEEEEecCCCcccccccccccccccccccccCCCeEEEecceEEEEEECCCCCeEEE
Confidence            46678999999999999999999999885321  10     0111110     11345555555544444       443


Q ss_pred             CC-------------------CCccEEEEEcCCCeEEEEecCCCceee
Q 042146          172 ST-------------------PNGKFILVGTLDNTLRLWNYSTRKILK  200 (262)
Q Consensus       172 ~~-------------------~~~~~l~~~~~dg~i~i~d~~~~~~~~  200 (262)
                      .-                   .++.+ +.++.||.|.-+|..+|+.+.
T Consensus       190 ~~s~~~~~~~~~~~~~~~~~s~Dg~~-~~~~~dg~v~A~d~~~G~~~W  236 (339)
T 2be1_A          190 TYSTWQQNVLDVPLALQNTFSKDGMC-IAPFRDKSLLASDLDFRIARW  236 (339)
T ss_dssp             EEEEEECCTTTHHHHTTCSSCSSSCC-EEEETTTEEEEECSTTCCEEE
T ss_pred             ecccccccccccccccccccccCCcE-EEECCCCEEEEEECCCCcEEE
Confidence            21                   12455 557889999999999998876

>1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A

Probab=96.13  E-value=0.16  Score=38.44  Aligned_cols=61  Identities=5%  Similarity=0.031  Sum_probs=33.7

Q ss_pred             CCCEEEeecC----C-----CeEEEEECCCCeeeee--eecCCCCeeeEEEccCCCEEEEEeCC-----CeEEEEeCCC
Q 042146          111 QSNRIVSDTF----N-----ETIRIWDIKTGKCLKV--LPAHSDPVTAIDFNRDGTMIVTSSYD-----GLYRILDAST  173 (262)
Q Consensus       111 ~~~~l~~~~~----d-----g~i~vwd~~~~~~~~~--~~~~~~~v~~~~~~~~~~~l~~~~~d-----g~i~~~d~~~  173 (262)
                      ++.+++.|+.    +     ..+.+||+.+.+-...  +.........+.+  ++++++.|+.+     ..+.+||..+
T Consensus        70 ~~~lyv~GG~~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~yd~~~  146 (308)
T 1zgk_A           70 GGLLYAVGGRNNSPDGNTDSSALDCYNPMTNQWSPCAPMSVPRNRIGVGVI--DGHIYAVGGSHGCIHHNSVERYEPER  146 (308)
T ss_dssp             TTEEEEECCEEEETTEEEECCCEEEEETTTTEEEECCCCSSCCBTCEEEEE--TTEEEEECCEETTEECCCEEEEETTT
T ss_pred             CCEEEEECCCcCCCCCCeecceEEEECCCCCeEeECCCCCcCccccEEEEE--CCEEEEEcCCCCCcccccEEEECCCC
Confidence            5666677665    2     3688899887653221  2111112222222  56677776643     3578888765

>2xbg_A YCF48-like protein; photosynthesis, photosystem II, beta-propeller, assembly FAC; 1.50A {Thermosynechococcus elongatus}

Probab=95.79  E-value=0.45  Score=36.36  Aligned_cols=68  Identities=12%  Similarity=0.097  Sum_probs=37.5

Q ss_pred             cceEEEEEeCCCCEEEeecCCCeEEEEECCCCeeeee-eecCCCCeeeEEEccCCCEEEEEeCCCeEEEEe
Q 042146          101 NYVFCINFNPQSNRIVSDTFNETIRIWDIKTGKCLKV-LPAHSDPVTAIDFNRDGTMIVTSSYDGLYRILD  170 (262)
Q Consensus       101 ~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~-~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~d  170 (262)
                      ..+..+.+.+++..++++. +|.|.. ....++.-.. .......+..+++.|++.+++.+...+..+-.|
T Consensus       122 ~~~~~i~~~~~~~~~~~~~-~g~v~~-S~DgG~tW~~~~~~~~~~~~~~~~~~~~~~~~~g~~G~~~~S~d  190 (327)
T 2xbg_A          122 GSPRLIKALGNGSAEMITN-VGAIYR-TKDSGKNWQALVQEAIGVMRNLNRSPSGEYVAVSSRGSFYSTWE  190 (327)
T ss_dssp             SCEEEEEEEETTEEEEEET-TCCEEE-ESSTTSSEEEEECSCCCCEEEEEECTTSCEEEEETTSSEEEEEC
T ss_pred             CCeEEEEEECCCCEEEEeC-CccEEE-EcCCCCCCEEeecCCCcceEEEEEcCCCcEEEEECCCcEEEEeC
Confidence            3466777776666666654 554432 1122322111 223456788999999888776664443333344

>2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus}

Probab=95.77  E-value=0.25  Score=37.50  Aligned_cols=61  Identities=13%  Similarity=0.132  Sum_probs=33.1

Q ss_pred             CCCEEEeecCC-------CeEEEEECCCCeeeee--eecCCCCeeeEEEccCCCEEEEEeC------CCeEEEEeCCC
Q 042146          111 QSNRIVSDTFN-------ETIRIWDIKTGKCLKV--LPAHSDPVTAIDFNRDGTMIVTSSY------DGLYRILDAST  173 (262)
Q Consensus       111 ~~~~l~~~~~d-------g~i~vwd~~~~~~~~~--~~~~~~~v~~~~~~~~~~~l~~~~~------dg~i~~~d~~~  173 (262)
                      ++.+++.|+.+       ..+.+||+.+.+-...  +...... .+++. .++.+++.|+.      -..+.+||..+
T Consensus       109 ~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~-~~~~~-~~~~iyv~GG~~~~~~~~~~~~~yd~~~  184 (318)
T 2woz_A          109 DDKIYVVAGKDLQTEASLDSVLCYDPVAAKWSEVKNLPIKVYG-HNVIS-HNGMIYCLGGKTDDKKCTNRVFIYNPKK  184 (318)
T ss_dssp             TTEEEEEEEEBTTTCCEEEEEEEEETTTTEEEEECCCSSCEES-CEEEE-ETTEEEEECCEESSSCBCCCEEEEETTT
T ss_pred             CCEEEEEcCccCCCCcccceEEEEeCCCCCEeECCCCCCcccc-cEEEE-ECCEEEEEcCCCCCCCccceEEEEcCCC
Confidence            56666666643       2588899887653221  1111111 11222 45667777764      23588888776

>1cru_A Protein (soluble quinoprotein glucose dehydrogena; beta-propeller, superbarrel; HET: PQQ; 1.50A {Acinetobacter calcoaceticus} SCOP: b.68.2.1 PDB: 1c9u_A* 1cq1_A* 1qbi_A

Probab=95.59  E-value=0.71  Score=37.21  Aligned_cols=61  Identities=15%  Similarity=0.220  Sum_probs=39.8

Q ss_pred             cceEEEEEeCCCCEEEeecCCCeEEEEECCCCeee--eeeec------CCCCeeeEEEccC---CCEEEEEe
Q 042146          101 NYVFCINFNPQSNRIVSDTFNETIRIWDIKTGKCL--KVLPA------HSDPVTAIDFNRD---GTMIVTSS  161 (262)
Q Consensus       101 ~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~--~~~~~------~~~~v~~~~~~~~---~~~l~~~~  161 (262)
                      .....|+|.|+|+++++-...+.|++++..+++..  ..+..      ....+..|+|+|+   +..|+.+.
T Consensus        27 ~~P~~~a~~pdG~l~V~e~~gg~I~~~~~~~g~~~~~~~~~~~~~~~~g~~Gllgia~~Pdf~~~g~lYv~~   98 (454)
T 1cru_A           27 NKPHALLWGPDNQIWLTERATGKILRVNPESGSVKTVFQVPEIVNDADGQNGLLGFAFHPDFKNNPYIYISG   98 (454)
T ss_dssp             SSEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCCTTSSCSEEEEEECTTTTTSCEEEEEE
T ss_pred             CCceEEEEcCCCcEEEEEcCCCEEEEEECCCCcEeEEecCCccccccCCCCceeEEEECCCcCcCCEEEEEE
Confidence            35679999999998877665567988886555432  22211      2456779999995   44444443

>2g8s_A Glucose/sorbosone dehydrogenases; bladed beta-propellor, pyrolloquinoline quinone (PQQ), quinoprotein, sugar binding protein; HET: MSE; 1.50A {Escherichia coli K12}

Probab=95.56  E-value=0.56  Score=36.35  Aligned_cols=58  Identities=12%  Similarity=0.208  Sum_probs=36.5

Q ss_pred             cceEEEEEeCCCC-EEEeecCCCeEEEEECCCCeeeee---e----ecCCCCeeeEEEccC---CCEEEEE
Q 042146          101 NYVFCINFNPQSN-RIVSDTFNETIRIWDIKTGKCLKV---L----PAHSDPVTAIDFNRD---GTMIVTS  160 (262)
Q Consensus       101 ~~v~~~~~~~~~~-~l~~~~~dg~i~vwd~~~~~~~~~---~----~~~~~~v~~~~~~~~---~~~l~~~  160 (262)
                      .....|+|.|+++ ++++ ...|.|++++.. ++....   +    .........|+++|+   +..|+.+
T Consensus        18 ~~P~~i~~~pdG~~l~V~-e~~G~i~~~~~~-g~~~~~~~~~~~v~~~g~~g~~gia~~pdf~~~g~lYv~   86 (353)
T 2g8s_A           18 DHPWALAFLPDNHGMLIT-LRGGELRHWQAG-KGLSAPLSGVPDVWAHGQGGLLDVVLAPDFAQSRRIWLS   86 (353)
T ss_dssp             SSEEEEEECSTTCCEEEE-ETTTEEEEEETT-TEECCCCBSCCCCCCSTTCSEEEEEECTTHHHHCEEEEE
T ss_pred             CCcEEEEEcCCCCEEEEE-eCCceEEEEeCC-CceeeEecCCcccccCCCCCceeEEECCCCCCCCEEEEE
Confidence            3467899999999 5554 457999999853 332111   1    112346789999995   4444443

>3a9g_A Putative uncharacterized protein; PQQ dependent dehydrogenase, aldose sugar dehydrogenase, BET propeller fold, oxidoreductase; HET: TRE; 2.39A {Pyrobaculum aerophilum} PDB: 3a9h_A*

Probab=95.47  E-value=0.66  Score=36.00  Aligned_cols=70  Identities=6%  Similarity=0.005  Sum_probs=43.7

Q ss_pred             cceEEEEEeCCCCEEEeecCCCeEEEEECCCCe-eeeeee---cCCCCeeeEEEccC---CCEEEEEeC----C----Ce
Q 042146          101 NYVFCINFNPQSNRIVSDTFNETIRIWDIKTGK-CLKVLP---AHSDPVTAIDFNRD---GTMIVTSSY----D----GL  165 (262)
Q Consensus       101 ~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~-~~~~~~---~~~~~v~~~~~~~~---~~~l~~~~~----d----g~  165 (262)
                      .....|+|.|+++++++ ..+|.|.++| .+++ .+..+.   ........|+++|+   +..|+++..    +    ..
T Consensus        29 ~~P~~ia~~pdG~l~V~-e~~g~I~~~d-~~G~~~~~~~~v~~~g~~g~~gia~~pdf~~~g~lyv~~~~~~~~~~~~~~  106 (354)
T 3a9g_A           29 EVPWSIAPLGGGRYLVT-ERPGRLVLIS-PSGKKLVASFDVANVGEAGLLGLALHPEFPKKSWVYLYASYFAEGGHIRNR  106 (354)
T ss_dssp             SCEEEEEEEETTEEEEE-ETTTEEEEEC-SSCEEEEEECCCCCSTTCSEEEEEECTTTTTSCEEEEEEEEECGGGCEEEE
T ss_pred             CCCeEEEEcCCCeEEEE-eCCCEEEEEe-CCCceEeeccceeecCCCceeeEEeCCCCCcCCEEEEEEeccCCCCCcceE
Confidence            45678999999986555 4469999997 4454 222211   12356889999997   444544432    2    45


Q ss_pred             EEEEeCC
Q 042146          166 YRILDAS  172 (262)
Q Consensus       166 i~~~d~~  172 (262)
                      |..|+..
T Consensus       107 v~r~~~~  113 (354)
T 3a9g_A          107 VIRGRLD  113 (354)
T ss_dssp             EEEEEEC
T ss_pred             EEEEEEC
Confidence            6666543

>2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli}

Probab=95.31  E-value=0.71  Score=35.58  Aligned_cols=49  Identities=12%  Similarity=-0.029  Sum_probs=25.2

Q ss_pred             CeEEEEECCCCeeee--eeecCCCCeeeEEEccCCCEEEEEeC------CCeEEEEeC
Q 042146          122 ETIRIWDIKTGKCLK--VLPAHSDPVTAIDFNRDGTMIVTSSY------DGLYRILDA  171 (262)
Q Consensus       122 g~i~vwd~~~~~~~~--~~~~~~~~v~~~~~~~~~~~l~~~~~------dg~i~~~d~  171 (262)
                      ..+.+||+.+.+-..  .+......-.+++. -++++++.|+.      ...+..||+
T Consensus       168 ~~v~~yd~~~~~W~~~~~~p~~~~~~~~~~~-~~~~iyv~GG~~~~~~~~~~v~~~d~  224 (357)
T 2uvk_A          168 KFLLSFDPSTQQWSYAGESPWYGTAGAAVVN-KGDKTWLINGEAKPGLRTDAVFELDF  224 (357)
T ss_dssp             CEEEEEETTTTEEEEEEECSSCCCBSCEEEE-ETTEEEEECCEEETTEECCCEEEEEC
T ss_pred             ccEEEEeCCCCcEEECCCCCCCCcccccEEE-ECCEEEEEeeecCCCcccCceEEEEe
Confidence            578999998764322  22211111122332 25666666653      345677775

>4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens}

Probab=95.12  E-value=0.76  Score=34.72  Aligned_cols=86  Identities=12%  Similarity=0.094  Sum_probs=45.9

Q ss_pred             eCCCCEEEeecC-----C------CeEEEEECCCCeeee--eeecCCCCeeeEEEccCCCEEEEEeCC--------CeEE
Q 042146          109 NPQSNRIVSDTF-----N------ETIRIWDIKTGKCLK--VLPAHSDPVTAIDFNRDGTMIVTSSYD--------GLYR  167 (262)
Q Consensus       109 ~~~~~~l~~~~~-----d------g~i~vwd~~~~~~~~--~~~~~~~~v~~~~~~~~~~~l~~~~~d--------g~i~  167 (262)
                      ..++.+++.|+.     .      ..+.+||+.+.+-..  .+.........+.+  ++.+++.|+.+        ..+.
T Consensus        43 ~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~--~~~lyv~GG~~~~~~~~~~~~~~  120 (315)
T 4asc_A           43 TKENQVFVAGGLFYNEDNKEDPMSAYFLQFDHLDSEWLGMPPLPSPRCLFGLGEA--LNSIYVVGGREIKDGERCLDSVM  120 (315)
T ss_dssp             CTTCCEEEEEEEEECSSCSSSCEEEEEEEEETTTTEEEECCCBSSCEESCEEEEE--TTEEEEECCEESSTTCCBCCCEE
T ss_pred             EECCEEEEEcCcccCCCCCccccccceEEecCCCCeEEECCCCCcchhceeEEEE--CCEEEEEeCCcCCCCCcccceEE
Confidence            346777777763     1      127788988765322  11111111112222  56666777632        3588


Q ss_pred             EEeCCC--------------------CCccEEEEEcC-C-----CeEEEEecCCC
Q 042146          168 ILDAST--------------------PNGKFILVGTL-D-----NTLRLWNYSTR  196 (262)
Q Consensus       168 ~~d~~~--------------------~~~~~l~~~~~-d-----g~i~i~d~~~~  196 (262)
                      +||..+                    .++..++.|+. +     ..+.+||+.+.
T Consensus       121 ~~d~~~~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~yd~~~~  175 (315)
T 4asc_A          121 CYDRLSFKWGESDPLPYVVYGHTVLSHMDLVYVIGGKGSDRKCLNKMCVYDPKKF  175 (315)
T ss_dssp             EEETTTTEEEECCCCSSCCBSCEEEEETTEEEEECCBCTTSCBCCCEEEEETTTT
T ss_pred             EECCCCCcEeECCCCCCcccceeEEEECCEEEEEeCCCCCCcccceEEEEeCCCC
Confidence            888766                    24455566654 1     35677777654

>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens}

Probab=95.03  E-value=1.6  Score=37.95  Aligned_cols=74  Identities=9%  Similarity=-0.063  Sum_probs=49.4

Q ss_pred             CcceEEEEEeCCCC-EEEeecCCCeEEEEECCCCeeeeeeecCCCCeeeEEEccCCCEEEEEe-CC-CeEEEEeCCC
Q 042146          100 TNYVFCINFNPQSN-RIVSDTFNETIRIWDIKTGKCLKVLPAHSDPVTAIDFNRDGTMIVTSS-YD-GLYRILDAST  173 (262)
Q Consensus       100 ~~~v~~~~~~~~~~-~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~d-g~i~~~d~~~  173 (262)
                      ......|++.+.++ ++++-...+.|.+.++........+.........|++.|....|+.+. .. +.|...++..
T Consensus       470 l~~P~GLAvD~~~~~LY~tD~~~~~I~v~~ldG~~~~~l~~~~l~~P~gIaVDp~~g~LYwtD~g~~~~I~~~~~dG  546 (791)
T 3m0c_C          470 IQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNG  546 (791)
T ss_dssp             CSCCCEEEEETTTTEEEEEETTTTEEEEEETTSSSEEEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTS
T ss_pred             CCCcceeeeeecCCcEEEEecCCCeEEEEeCCCCeEEEEEeCCCCCcceEEEecCCCCEEEecCCCCCeEEEEecCC
Confidence            34567899998664 455666678999999875544333333345678999999755555554 33 6788777654

>2ism_A Putative oxidoreductase; BL41XU spring-8, bladed beta-propellor, glucose dehydrogenas structural genomics, NPPSFA; 1.90A {Thermus thermophilus}

Probab=94.73  E-value=1.1  Score=34.65  Aligned_cols=104  Identities=12%  Similarity=0.146  Sum_probs=58.9

Q ss_pred             CceEEEEEccCCCeEEEecCCCeEEEeecCCCCCCCCCCCCCCccccCCccccccceeEEEEecCCCccceecccCCcce
Q 042146           24 RAVSYVKFSHDGRLLTSSSAEKTLLTYSLSSISNFDSTPPSPLQKFTGHEQGISDLATIRLWDVPTATSLKTLIGHTNYV  103 (262)
Q Consensus        24 ~~v~~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~i~v~d~~~~~~~~~~~~~~~~v  103 (262)
                      .....++|.|+|+++++ ..+|.|++++ .. ..                        -.+-++.      .........
T Consensus        31 ~~P~~ia~~pdG~l~V~-e~~g~I~~i~-~g-~~------------------------~~~~~~~------v~~~g~~~p   77 (352)
T 2ism_A           31 EVPWALAFLPDGGMLIA-ERPGRIRLFR-EG-RL------------------------STYAELS------VYHRGESGL   77 (352)
T ss_dssp             SCEEEEEECTTSCEEEE-ETTTEEEEEE-TT-EE------------------------EEEEECC------CCCSTTCSE
T ss_pred             CCceEEEEcCCCeEEEE-eCCCeEEEEE-CC-Cc------------------------cEeecce------EeecCCCCc
Confidence            34679999999985555 5568888875 21 00                        0001111      111123457


Q ss_pred             EEEEEeCC---CCEEEeecC-C-----CeEEEEECCCCe-----ee-eeee---cCCCCeeeEEEccCCCEEEEE
Q 042146          104 FCINFNPQ---SNRIVSDTF-N-----ETIRIWDIKTGK-----CL-KVLP---AHSDPVTAIDFNRDGTMIVTS  160 (262)
Q Consensus       104 ~~~~~~~~---~~~l~~~~~-d-----g~i~vwd~~~~~-----~~-~~~~---~~~~~v~~~~~~~~~~~l~~~  160 (262)
                      ..|+++|+   +..|+++.. .     +.|..++...++     .+ ..+.   ........++|.|+|.++++.
T Consensus        78 ~gia~~pdf~~~g~lYv~~~~~~~~~~~~v~r~~~~~~~~~~~~~l~~~~p~~~~~~h~~~~l~~~pdG~Lyv~~  152 (352)
T 2ism_A           78 LGLALHPRFPQEPYVYAYRTVAEGGLRNQVVRLRHLGERGVLDRVVLDGIPARPHGLHSGGRIAFGPDGMLYVTT  152 (352)
T ss_dssp             EEEEECTTTTTSCEEEEEEEECTTSSEEEEEEEEECSSCEEEEEEEEEEECCCTTCCCCCCCEEECTTSCEEEEC
T ss_pred             eeEEECCCCCCCCEEEEEEecCCCCCccEEEEEEeCCCCcCceEEEEEeCCCCCCCCcCCceEEECCCCCEEEEE
Confidence            88999998   555554433 2     578888876431     11 1132   111234689999999766654

>3ei3_A DNA damage-binding protein 1; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Homo sapiens} PDB: 3ei1_A* 3ei2_A* 3ei4_A* 4a0l_A* 3e0c_A* 3i7k_A* 3i7h_A* 3i7l_A* 3i7n_A* 3i7o_A* 3i7p_A* 3i89_A* 3i8c_A* 3i8e_A* 2b5l_A 2b5m_A 2hye_A* 4a11_A* 4a0k_C* 4a0a_A* ...

Probab=94.72  E-value=2.4  Score=38.58  Aligned_cols=90  Identities=14%  Similarity=0.156  Sum_probs=56.0

Q ss_pred             eeEEEEecCCCccceeccc-CCcceEEEEEeC----CCCEEEeec----------CCCeEEEEECCCCee--eeeeecCC
Q 042146           80 ATIRLWDVPTATSLKTLIG-HTNYVFCINFNP----QSNRIVSDT----------FNETIRIWDIKTGKC--LKVLPAHS  142 (262)
Q Consensus        80 ~~i~v~d~~~~~~~~~~~~-~~~~v~~~~~~~----~~~~l~~~~----------~dg~i~vwd~~~~~~--~~~~~~~~  142 (262)
                      ..|++.|..+.+.+..+.- ....+.+++...    ...++++|+          ..|.|.+|++..++.  ++.. ..+
T Consensus       807 s~i~lidp~t~~~i~~~~l~~nE~~~sv~~v~~~~~~~~~lvVGTa~~~~~e~~~~~Gri~vf~v~~~kL~lv~~~-~v~  885 (1158)
T 3ei3_A          807 HNLLIIDQHTFEVLHAHQFLQNEYALSLVSCKLGKDPNTYFIVGTAMVYPEEAEPKQGRIVVFQYSDGKLQTVAEK-EVK  885 (1158)
T ss_dssp             EEEEEEETTTCCEEEEEECCTTEEEEEEEEECCTTCCCCEEEEEEEECCTTCSSCCCEEEEEEEEETTEEEEEEEE-EES
T ss_pred             EEEEEEeCCCCeEEEEEeCCCCcceEEEEEEEEccCCCEEEEEEeeecCCCCCCCCceEEEEEEEECCEEEEEEEE-EcC
Confidence            4788999888876654432 234566665432    246787775          357899999875433  2222 246


Q ss_pred             CCeeeEEEccCCCEEEEEeCCCeEEEEeCCC
Q 042146          143 DPVTAIDFNRDGTMIVTSSYDGLYRILDAST  173 (262)
Q Consensus       143 ~~v~~~~~~~~~~~l~~~~~dg~i~~~d~~~  173 (262)
                      +++++++-- +| +|++| ...++++|++..
T Consensus       886 g~v~al~~~-~g-~Lla~-ig~~l~vy~l~~  913 (1158)
T 3ei3_A          886 GAVYSMVEF-NG-KLLAS-INSTVRLYEWTT  913 (1158)
T ss_dssp             SCEEEEEEE-TT-EEEEE-ETTEEEEEEECT
T ss_pred             CcCEEEeee-CC-EEEEE-cCCEEEEEECCC
Confidence            788887644 35 44443 357889998864

>3sbq_A Nitrous-oxide reductase; beta-propeller, cupredoxin domain, copper-contain periplasmic, oxidoreductase; 1.70A {Pseudomonas stutzeri} PDB: 3sbp_A 3sbr_A 1qni_A

Probab=94.61  E-value=0.14  Score=42.08  Aligned_cols=71  Identities=11%  Similarity=0.009  Sum_probs=50.7

Q ss_pred             ceEEEEEeCCCCEEEeec-CCCeEEEEECCCC------ee-------eeeeecCCCCeeeEEEccCCCEEEEEeCCCeEE
Q 042146          102 YVFCINFNPQSNRIVSDT-FNETIRIWDIKTG------KC-------LKVLPAHSDPVTAIDFNRDGTMIVTSSYDGLYR  167 (262)
Q Consensus       102 ~v~~~~~~~~~~~l~~~~-~dg~i~vwd~~~~------~~-------~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~  167 (262)
                      ....+.++|||+++++++ -+.++.++|++..      +.       +.+.+. .......+|.++|....+...|..|.
T Consensus       324 sPHGv~vsPDGkyi~v~GKLsptvtV~d~~k~~~~~~~k~~~~~~~~~ae~e~-GlGPlHt~Fd~~G~aYTtlfidSqvv  402 (638)
T 3sbq_A          324 NPHGCNTSSDGKYFIAAGKLSPTCSMIAIDKLPDLFAGKLADPRDVIVGEPEL-GLGPLHTTFDGRGNAYTTLFIDSQVV  402 (638)
T ss_dssp             SCCCEEECTTSCEEEEECTTSSBEEEEEGGGHHHHHTTCCSCGGGGEEECCBC-CSCEEEEEECSSSEEEEEETTTTEEE
T ss_pred             CCcceeeCCCCCEEEEcCCCCCeEEEEEeehhhhhhhccccCcccceEeeccC-CCcccEEEECCCCceEeeeeecceEE
Confidence            345678999999987654 5779999998742      11       223332 33457789999996666777999999


Q ss_pred             EEeCCC
Q 042146          168 ILDAST  173 (262)
Q Consensus       168 ~~d~~~  173 (262)
                      -|++..
T Consensus       403 kWni~~  408 (638)
T 3sbq_A          403 KWNMEE  408 (638)
T ss_dssp             EEEHHH
T ss_pred             EEeccH
Confidence            999654

>2ism_A Putative oxidoreductase; BL41XU spring-8, bladed beta-propellor, glucose dehydrogenas structural genomics, NPPSFA; 1.90A {Thermus thermophilus}

Probab=94.46  E-value=1.3  Score=34.26  Aligned_cols=57  Identities=11%  Similarity=0.265  Sum_probs=36.7

Q ss_pred             cceEEEEEeCCCCEEEeecCCCeEEEEECCCCee--eeeee---cCCCCeeeEEEccC---CCEEEEE
Q 042146          101 NYVFCINFNPQSNRIVSDTFNETIRIWDIKTGKC--LKVLP---AHSDPVTAIDFNRD---GTMIVTS  160 (262)
Q Consensus       101 ~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~--~~~~~---~~~~~v~~~~~~~~---~~~l~~~  160 (262)
                      .....++|.|+++++++ ...|.|.+++  .++.  +..+.   ........|+++|+   +..|+++
T Consensus        31 ~~P~~ia~~pdG~l~V~-e~~g~I~~i~--~g~~~~~~~~~v~~~g~~~p~gia~~pdf~~~g~lYv~   95 (352)
T 2ism_A           31 EVPWALAFLPDGGMLIA-ERPGRIRLFR--EGRLSTYAELSVYHRGESGLLGLALHPRFPQEPYVYAY   95 (352)
T ss_dssp             SCEEEEEECTTSCEEEE-ETTTEEEEEE--TTEEEEEEECCCCCSTTCSEEEEEECTTTTTSCEEEEE
T ss_pred             CCceEEEEcCCCeEEEE-eCCCeEEEEE--CCCccEeecceEeecCCCCceeEEECCCCCCCCEEEEE
Confidence            34678999999986655 4569999998  3432  22111   12346789999997   4444443

>3das_A Putative oxidoreductase; aldose sugar dehydrogenase, beta propellor, PQQ, SGDH; HET: MSE ARA PQQ; 1.60A {Streptomyces coelicolor}

Probab=94.32  E-value=1.4  Score=34.07  Aligned_cols=72  Identities=21%  Similarity=0.182  Sum_probs=46.5

Q ss_pred             CcceEEEEEeCCCCEEEeecCCCeEEEEECCCCeee--eee----ecCCCCeeeEEEccC---CCEEEEE---eCCCeEE
Q 042146          100 TNYVFCINFNPQSNRIVSDTFNETIRIWDIKTGKCL--KVL----PAHSDPVTAIDFNRD---GTMIVTS---SYDGLYR  167 (262)
Q Consensus       100 ~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~--~~~----~~~~~~v~~~~~~~~---~~~l~~~---~~dg~i~  167 (262)
                      -.....|+|.|++.++++--..|.|++++...++..  ..+    .........|+++|+   ...|+..   ..++.|.
T Consensus        31 L~~P~~ia~~pdG~llVter~~G~I~~v~~~~g~~~~v~~~~~v~~~g~~GllGia~~Pdf~~~g~lYv~yt~~~~~~v~  110 (347)
T 3das_A           31 LNSPWGLAPLPGGDLLVSSRDEATITRVDAKTGRKTELGEVPGVSPSGEGGLLGIALSPDYASDHMVYAYFTSASDNRIV  110 (347)
T ss_dssp             CSSEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCBTTBSEEEEEECTTHHHHCEEEEEEECSSSEEEE
T ss_pred             CCCceEEEEcCCCcEEEEEecCCEEEEEECCCCcEeeecccCceeecCCCCceeeEeccccccCCEEEEEEecCCCCEEE
Confidence            345679999999998887766899999987655432  111    123456789999995   3344432   2344555


Q ss_pred             EEeC
Q 042146          168 ILDA  171 (262)
Q Consensus       168 ~~d~  171 (262)
                      -|..
T Consensus       111 R~~~  114 (347)
T 3das_A          111 RMLY  114 (347)
T ss_dssp             EEEB
T ss_pred             EEEe
Confidence            5543

>1cru_A Protein (soluble quinoprotein glucose dehydrogena; beta-propeller, superbarrel; HET: PQQ; 1.50A {Acinetobacter calcoaceticus} SCOP: b.68.2.1 PDB: 1c9u_A* 1cq1_A* 1qbi_A

Probab=94.06  E-value=1.9  Score=34.71  Aligned_cols=29  Identities=10%  Similarity=0.147  Sum_probs=21.1

Q ss_pred             CceEEEEEccCCCeEEEecCCCeEEEeec
Q 042146           24 RAVSYVKFSHDGRLLTSSSAEKTLLTYSL   52 (262)
Q Consensus        24 ~~v~~~~~~~~~~~l~s~~~d~~i~iw~~   52 (262)
                      .....|+|.|+|+++++-...+.|++++.
T Consensus        27 ~~P~~~a~~pdG~l~V~e~~gg~I~~~~~   55 (454)
T 1cru_A           27 NKPHALLWGPDNQIWLTERATGKILRVNP   55 (454)
T ss_dssp             SSEEEEEECTTSCEEEEETTTCEEEEECT
T ss_pred             CCceEEEEcCCCcEEEEEcCCCEEEEEEC
Confidence            45679999999997777554456777743

>2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus}

Probab=93.78  E-value=1.6  Score=32.92  Aligned_cols=63  Identities=14%  Similarity=0.107  Sum_probs=33.6

Q ss_pred             eCCCCEEEeecC----CC-------eEEEEECCCCeeeee--eecCCCCeeeEEEccCCCEEEEEeCC-------CeEEE
Q 042146          109 NPQSNRIVSDTF----NE-------TIRIWDIKTGKCLKV--LPAHSDPVTAIDFNRDGTMIVTSSYD-------GLYRI  168 (262)
Q Consensus       109 ~~~~~~l~~~~~----dg-------~i~vwd~~~~~~~~~--~~~~~~~v~~~~~~~~~~~l~~~~~d-------g~i~~  168 (262)
                      ..++.+++.|+.    ++       .+.+||+.+.+-...  +.........+.+  ++.+++.|+.+       ..+.+
T Consensus        54 ~~~~~lyv~GG~~~~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~~  131 (318)
T 2woz_A           54 TQQNQVYVVGGLYVDEENKDQPLQSYFFQLDNVSSEWVGLPPLPSARCLFGLGEV--DDKIYVVAGKDLQTEASLDSVLC  131 (318)
T ss_dssp             CSSSCEEEEESSCC-------CCCBEEEEEETTTTEEEECSCBSSCBCSCEEEEE--TTEEEEEEEEBTTTCCEEEEEEE
T ss_pred             EECCEEEEECCcccCccccCCCccccEEEEeCCCCcEEECCCCCccccccceEEE--CCEEEEEcCccCCCCcccceEEE
Confidence            346777777773    12       277889877653221  2111111122222  56777777754       24778


Q ss_pred             EeCCC
Q 042146          169 LDAST  173 (262)
Q Consensus       169 ~d~~~  173 (262)
                      ||..+
T Consensus       132 yd~~~  136 (318)
T 2woz_A          132 YDPVA  136 (318)
T ss_dssp             EETTT
T ss_pred             EeCCC
Confidence            88765

>3a9g_A Putative uncharacterized protein; PQQ dependent dehydrogenase, aldose sugar dehydrogenase, BET propeller fold, oxidoreductase; HET: TRE; 2.39A {Pyrobaculum aerophilum} PDB: 3a9h_A*

Probab=93.49  E-value=2.1  Score=33.19  Aligned_cols=106  Identities=15%  Similarity=0.133  Sum_probs=58.6

Q ss_pred             cCceEEEEEccCCCeEEEecCCCeEEEeecCCCCCCCCCCCCCCccccCCccccccceeEEEEecCCCccceecccCCcc
Q 042146           23 LRAVSYVKFSHDGRLLTSSSAEKTLLTYSLSSISNFDSTPPSPLQKFTGHEQGISDLATIRLWDVPTATSLKTLIGHTNY  102 (262)
Q Consensus        23 ~~~v~~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~i~v~d~~~~~~~~~~~~~~~~  102 (262)
                      -.....|+|.|+|+++++ ..+|.|++++... .       .                  .+-++.      ........
T Consensus        28 l~~P~~ia~~pdG~l~V~-e~~g~I~~~d~~G-~-------~------------------~~~~~~------v~~~g~~g   74 (354)
T 3a9g_A           28 LEVPWSIAPLGGGRYLVT-ERPGRLVLISPSG-K-------K------------------LVASFD------VANVGEAG   74 (354)
T ss_dssp             CSCEEEEEEEETTEEEEE-ETTTEEEEECSSC-E-------E------------------EEEECC------CCCSTTCS
T ss_pred             CCCCeEEEEcCCCeEEEE-eCCCEEEEEeCCC-c-------e------------------Eeeccc------eeecCCCc
Confidence            345689999999985555 5558888774211 0       0                  000110      01112245


Q ss_pred             eEEEEEeCC---CCEEEeecC----C----CeEEEEECCCC-------eee-eeeec-CCCCeeeEEEccCCCEEEEEe
Q 042146          103 VFCINFNPQ---SNRIVSDTF----N----ETIRIWDIKTG-------KCL-KVLPA-HSDPVTAIDFNRDGTMIVTSS  161 (262)
Q Consensus       103 v~~~~~~~~---~~~l~~~~~----d----g~i~vwd~~~~-------~~~-~~~~~-~~~~v~~~~~~~~~~~l~~~~  161 (262)
                      ...|+++|+   +..|+++..    +    ..|..|+....       +.+ ..+.. .......|+|.|+|.++++.+
T Consensus        75 ~~gia~~pdf~~~g~lyv~~~~~~~~~~~~~~v~r~~~~~~~~~~~~~~~l~~~~~~~~~h~~~~l~~~pDG~Lyvt~G  153 (354)
T 3a9g_A           75 LLGLALHPEFPKKSWVYLYASYFAEGGHIRNRVIRGRLDGSTFKLKEVKTLIDGIPGAYIHNGGRIRFGPDGMLYITTG  153 (354)
T ss_dssp             EEEEEECTTTTTSCEEEEEEEEECGGGCEEEEEEEEEECSSSCCEEEEEEEEEEEECCSSCCCCCEEECTTSCEEEECC
T ss_pred             eeeEEeCCCCCcCCEEEEEEeccCCCCCcceEEEEEEECCCCcCcCccEEEEEcCCCCCCcCCceEEECCCCcEEEEEC
Confidence            778999997   555554433    2    56777876543       111 11221 112346799999998766643

>2g8s_A Glucose/sorbosone dehydrogenases; bladed beta-propellor, pyrolloquinoline quinone (PQQ), quinoprotein, sugar binding protein; HET: MSE; 1.50A {Escherichia coli K12}

Probab=92.81  E-value=2.6  Score=32.54  Aligned_cols=29  Identities=10%  Similarity=-0.007  Sum_probs=21.2

Q ss_pred             CceEEEEEccCCCeEEEecCCCeEEEeec
Q 042146           24 RAVSYVKFSHDGRLLTSSSAEKTLLTYSL   52 (262)
Q Consensus        24 ~~v~~~~~~~~~~~l~s~~~d~~i~iw~~   52 (262)
                      .....|+|.|+|+.|+++...|.|++++.
T Consensus        18 ~~P~~i~~~pdG~~l~V~e~~G~i~~~~~   46 (353)
T 2g8s_A           18 DHPWALAFLPDNHGMLITLRGGELRHWQA   46 (353)
T ss_dssp             SSEEEEEECSTTCCEEEEETTTEEEEEET
T ss_pred             CCcEEEEEcCCCCEEEEEeCCceEEEEeC
Confidence            34679999999993444456788888863

>2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli}

Probab=92.17  E-value=3.1  Score=31.89  Aligned_cols=51  Identities=16%  Similarity=0.163  Sum_probs=27.6

Q ss_pred             CCCEEEeecC-C---------CeEEEEECCCCeeee--eee-cCCCCeeeEEEccCCCEEEEEeCC
Q 042146          111 QSNRIVSDTF-N---------ETIRIWDIKTGKCLK--VLP-AHSDPVTAIDFNRDGTMIVTSSYD  163 (262)
Q Consensus       111 ~~~~l~~~~~-d---------g~i~vwd~~~~~~~~--~~~-~~~~~v~~~~~~~~~~~l~~~~~d  163 (262)
                      ++.+++.|+. +         ..+.+||+.+.+-..  .+. .......++.  .++++++.|+.+
T Consensus        65 ~~~lyv~GG~~~~~~~~~~~~~~v~~yd~~~~~W~~~~~~~p~~r~~~~~~~--~~~~iyv~GG~~  128 (357)
T 2uvk_A           65 DGNLYVFGGIGKNSEGLTQVFNDVHKYNPKTNSWVKLMSHAPMGMAGHVTFV--HNGKAYVTGGVN  128 (357)
T ss_dssp             TTEEEEECCEEECTTSCEEECCCEEEEETTTTEEEECSCCCSSCCSSEEEEE--ETTEEEEEECCC
T ss_pred             CCEEEEEcCCCCCCCccceeeccEEEEeCCCCcEEECCCCCCcccccceEEE--ECCEEEEEeCcC
Confidence            4666666665 2         468899998765322  121 1111222222  567777888754

>3no0_A DNA gyrase subunit A; DNA topology, topoisomerase, C-terminal DO gyrase, DNA binding protein, isomerase; HET: DNA GOL; 1.30A {Aquifex aeolicus}

Probab=91.90  E-value=3  Score=31.04  Aligned_cols=72  Identities=15%  Similarity=0.081  Sum_probs=45.4

Q ss_pred             CcceEEEEEeC--CCCEEEeecCCCeEEEEECCCC------eeeeeeecCCCCeeeEEEccCCCEEEEEeCCCeEEEEeC
Q 042146          100 TNYVFCINFNP--QSNRIVSDTFNETIRIWDIKTG------KCLKVLPAHSDPVTAIDFNRDGTMIVTSSYDGLYRILDA  171 (262)
Q Consensus       100 ~~~v~~~~~~~--~~~~l~~~~~dg~i~vwd~~~~------~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~d~  171 (262)
                      ...|..+.. +  +..+++..+.+|.++...+..-      .....++. .+.+..+........++..+..|.+..+..
T Consensus        67 ~e~i~~v~~-~~~~~~~~v~~T~~G~iKr~~l~~~~~~~~G~~~i~lke-gD~l~~~~~~~~~~~ill~T~~G~~~r~~~  144 (276)
T 3no0_A           67 EEKIVGAFI-REKFGNRLLLATKKGYVKKIPLAEFEYKAQGMPIIKLTE-GDEVVSIASSVDETHILLFTKKGRVARFSV  144 (276)
T ss_dssp             TCCEEEEEE-GGGSCSEEEEEETTSEEEEEEGGGTTTCSTTEECSCCCT-TCCEEEEEECCSSCEEEEEETTSEEEEEEG
T ss_pred             CCEEEEEEC-CcCCCCEEEEEeCCCEEEEEEHHHhhhhcCCeEEEecCC-CCEEEEEEEeCCCCEEEEEECCCEEEEEEh
Confidence            344555433 3  4678888999999999887542      11222222 345555555555667888888898888875


Q ss_pred             CC
Q 042146          172 ST  173 (262)
Q Consensus       172 ~~  173 (262)
                      ..
T Consensus       145 ~e  146 (276)
T 3no0_A          145 RE  146 (276)
T ss_dssp             GG
T ss_pred             hh
Confidence            43

>3sbq_A Nitrous-oxide reductase; beta-propeller, cupredoxin domain, copper-contain periplasmic, oxidoreductase; 1.70A {Pseudomonas stutzeri} PDB: 3sbp_A 3sbr_A 1qni_A

Probab=91.62  E-value=2.2  Score=35.38  Aligned_cols=52  Identities=12%  Similarity=0.229  Sum_probs=40.7

Q ss_pred             CeeeEEEccCCCEEEEEe-CCCeEEEEeCCC--------------------------------CCccEEEEEcCCCeEEE
Q 042146          144 PVTAIDFNRDGTMIVTSS-YDGLYRILDAST--------------------------------PNGKFILVGTLDNTLRL  190 (262)
Q Consensus       144 ~v~~~~~~~~~~~l~~~~-~dg~i~~~d~~~--------------------------------~~~~~l~~~~~dg~i~i  190 (262)
                      ....+..+|||++++.++ .+.++.++|.+.                                ++|.-..+--.|..|..
T Consensus       324 sPHGv~vsPDGkyi~v~GKLsptvtV~d~~k~~~~~~~k~~~~~~~~~ae~e~GlGPlHt~Fd~~G~aYTtlfidSqvvk  403 (638)
T 3sbq_A          324 NPHGCNTSSDGKYFIAAGKLSPTCSMIAIDKLPDLFAGKLADPRDVIVGEPELGLGPLHTTFDGRGNAYTTLFIDSQVVK  403 (638)
T ss_dssp             SCCCEEECTTSCEEEEECTTSSBEEEEEGGGHHHHHTTCCSCGGGGEEECCBCCSCEEEEEECSSSEEEEEETTTTEEEE
T ss_pred             CCcceeeCCCCCEEEEcCCCCCeEEEEEeehhhhhhhccccCcccceEeeccCCCcccEEEECCCCceEeeeeecceEEE
Confidence            347789999999887776 688999999874                                55655555568899999


Q ss_pred             EecCC
Q 042146          191 WNYST  195 (262)
Q Consensus       191 ~d~~~  195 (262)
                      |++..
T Consensus       404 Wni~~  408 (638)
T 3sbq_A          404 WNMEE  408 (638)
T ss_dssp             EEHHH
T ss_pred             EeccH
Confidence            99864

>2wg3_C Hedgehog-interacting protein; lipoprotein, development, membrane, secreted, protease, PALM hydrolase, developmental protein, autocatalytic cleavage; HET: NAG; 2.60A {Homo sapiens} PDB: 2wg4_B 2wfx_B 2wft_A 3ho3_A 3ho4_A 3ho5_A

Probab=91.36  E-value=3.3  Score=33.49  Aligned_cols=53  Identities=6%  Similarity=-0.007  Sum_probs=33.7

Q ss_pred             cceEEEEEeCCCC-EEEeecCCCeEEEEECCCCe---eeeeee---c------CCCCeeeEEEccC
Q 042146          101 NYVFCINFNPQSN-RIVSDTFNETIRIWDIKTGK---CLKVLP---A------HSDPVTAIDFNRD  153 (262)
Q Consensus       101 ~~v~~~~~~~~~~-~l~~~~~dg~i~vwd~~~~~---~~~~~~---~------~~~~v~~~~~~~~  153 (262)
                      ..-..|+|.|++. .++++...|.|++++.....   .+..+.   .      .......|+|+|+
T Consensus        14 ~~P~~~a~~pdG~~rl~V~er~G~i~~~~~~g~~~~~~~~~~~~~~~~g~~~~~e~Gllgia~~P~   79 (463)
T 2wg3_C           14 RQPVGALHSGDGSQRLFILEKEGYVKILTPEGEIFKEPYLDIHKLVQSGIKGGDERGLLSLAFHPN   79 (463)
T ss_dssp             SSEEEEECCSSSSCCEEEEETTTEEEEECTTSCBCSSCSEECTTTBCCCCSSSCCCSEEEEEECTT
T ss_pred             CCceEEEECCCCCeEEEEEeCCceEEEEeCCCCeeeeeecCCcceeccCccccCCCcceeeEeCCC
Confidence            3456899999986 45555678999999754221   112111   1      1356788999985

>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B

Probab=91.28  E-value=2.7  Score=37.44  Aligned_cols=30  Identities=20%  Similarity=0.323  Sum_probs=26.3

Q ss_pred             CCccEEEEEcCCCeEEEEecCCCceeeEEe
Q 042146          174 PNGKFILVGTLDNTLRLWNYSTRKILKTYS  203 (262)
Q Consensus       174 ~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~  203 (262)
                      ++..++++-+.|+++|+|++.+++++.+..
T Consensus       245 ~~~~~lftl~~D~~LRiWsl~t~~~v~t~d  274 (950)
T 4gq2_M          245 STYNVLVMLSLDYKLKVLDLSTNQCVETIE  274 (950)
T ss_dssp             TTTTEEEEEETTCEEEEEETTTTEEEEEEE
T ss_pred             CCCcEEEEEECCCEEEEEECCCCCeEeeec
Confidence            466789999999999999999999988764

>3das_A Putative oxidoreductase; aldose sugar dehydrogenase, beta propellor, PQQ, SGDH; HET: MSE ARA PQQ; 1.60A {Streptomyces coelicolor}

Probab=91.21  E-value=4.2  Score=31.42  Aligned_cols=112  Identities=16%  Similarity=0.126  Sum_probs=61.9

Q ss_pred             cCcCceEEEEEccCCCeEEEecCCCeEEEeecCCCCCCCCCCCCCCccccCCccccccceeEEEEecCCCccceecccCC
Q 042146           21 GHLRAVSYVKFSHDGRLLTSSSAEKTLLTYSLSSISNFDSTPPSPLQKFTGHEQGISDLATIRLWDVPTATSLKTLIGHT  100 (262)
Q Consensus        21 ~h~~~v~~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~i~v~d~~~~~~~~~~~~~~  100 (262)
                      ..-...+.|+|.|+|+++++--..|.|++++......                        -.+-.+.     .......
T Consensus        29 ~gL~~P~~ia~~pdG~llVter~~G~I~~v~~~~g~~------------------------~~v~~~~-----~v~~~g~   79 (347)
T 3das_A           29 TGLNSPWGLAPLPGGDLLVSSRDEATITRVDAKTGRK------------------------TELGEVP-----GVSPSGE   79 (347)
T ss_dssp             CCCSSEEEEEECTTSCEEEEETTTCEEEEECTTTCCE------------------------EEEEECT-----TCCCBTT
T ss_pred             cCCCCceEEEEcCCCcEEEEEecCCEEEEEECCCCcE------------------------eeecccC-----ceeecCC
Confidence            3345578999999999777766588888885321100                        0000000     0111234


Q ss_pred             cceEEEEEeCC---CCEEEee---cCCCeEEEEECCCC----------eee-eeeec-CCCCeeeEEEccCCCEEEEEe
Q 042146          101 NYVFCINFNPQ---SNRIVSD---TFNETIRIWDIKTG----------KCL-KVLPA-HSDPVTAIDFNRDGTMIVTSS  161 (262)
Q Consensus       101 ~~v~~~~~~~~---~~~l~~~---~~dg~i~vwd~~~~----------~~~-~~~~~-~~~~v~~~~~~~~~~~l~~~~  161 (262)
                      .....|+++|+   +..|+..   ..++.|.-|.+..+          +.+ ..+.. .......|+|.|+|.++++.+
T Consensus        80 ~GllGia~~Pdf~~~g~lYv~yt~~~~~~v~R~~~~~~~~~~~~~~~~~~i~~~~p~~~~H~g~~l~fgpDG~Lyvt~G  158 (347)
T 3das_A           80 GGLLGIALSPDYASDHMVYAYFTSASDNRIVRMLYDEKKPSGEQLGAPDTVFRGIPKGVIHNGGRIAFGPDKMLYAGTG  158 (347)
T ss_dssp             BSEEEEEECTTHHHHCEEEEEEECSSSEEEEEEEBCTTSCTTCCBCCCEEEEEEECCCSSCCCCCEEECTTSCEEEECB
T ss_pred             CCceeeEeccccccCCEEEEEEecCCCCEEEEEEeCCCCcccccCCCcEEEEEcCCCCCCccCccccCCCCCCEEEEEC
Confidence            56788999985   3444432   23456666765541          111 11211 112346799999998777654

>2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A*

Probab=91.05  E-value=6.8  Score=33.52  Aligned_cols=87  Identities=15%  Similarity=0.195  Sum_probs=51.3

Q ss_pred             CCCCEEEeecCC----CeEEEEECCCCeeeeee--------ecCCCCeeeEEEcc-CCCEEEEEeCCC------eEEEEe
Q 042146          110 PQSNRIVSDTFN----ETIRIWDIKTGKCLKVL--------PAHSDPVTAIDFNR-DGTMIVTSSYDG------LYRILD  170 (262)
Q Consensus       110 ~~~~~l~~~~~d----g~i~vwd~~~~~~~~~~--------~~~~~~v~~~~~~~-~~~~l~~~~~dg------~i~~~d  170 (262)
                      .++.+++.|+.+    ..+.+||+.+++-...-        ...... .+++..+ ++.+++.|+.++      .+.+||
T Consensus       396 ~~~~iyv~GG~~~~~~~~v~~yd~~~~~W~~~~~~~p~~~~p~~R~~-hs~~~~~~~~~lyv~GG~~~~~~~~~dv~~yd  474 (695)
T 2zwa_A          396 AGNDVFYMGGSNPYRVNEILQLSIHYDKIDMKNIEVSSSEVPVARMC-HTFTTISRNNQLLLIGGRKAPHQGLSDNWIFD  474 (695)
T ss_dssp             CSSCEEEECCBSSSBCCCEEEEEECSSCEEEEECCCCCSCCCCCCBS-CEEEEETTTTEEEEECCBSSTTCBCCCCEEEE
T ss_pred             ECCEEEEECCCCCCCcCcEEEEECCCCeEEEeccCCCCCCCCccccc-eEEEEEccCCEEEEEcCCCCCCCccccEEEEe
Confidence            456677777643    46888998876532221        111112 2333333 677778877543      477888


Q ss_pred             CCC---------------------CCccEEEEEcCCC--eEEEEecCCCc
Q 042146          171 AST---------------------PNGKFILVGTLDN--TLRLWNYSTRK  197 (262)
Q Consensus       171 ~~~---------------------~~~~~l~~~~~dg--~i~i~d~~~~~  197 (262)
                      ..+                     .++..++.|+.++  .+.+||+.+.+
T Consensus       475 ~~t~~W~~~~~~p~~R~~h~~~~~~~~~iyv~GG~~~~~~v~~yd~~t~~  524 (695)
T 2zwa_A          475 MKTREWSMIKSLSHTRFRHSACSLPDGNVLILGGVTEGPAMLLYNVTEEI  524 (695)
T ss_dssp             TTTTEEEECCCCSBCCBSCEEEECTTSCEEEECCBCSSCSEEEEETTTTE
T ss_pred             CCCCcEEECCCCCCCcccceEEEEcCCEEEEECCCCCCCCEEEEECCCCc
Confidence            766                     2666677776544  57788877654

>3ei3_A DNA damage-binding protein 1; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Homo sapiens} PDB: 3ei1_A* 3ei2_A* 3ei4_A* 4a0l_A* 3e0c_A* 3i7k_A* 3i7h_A* 3i7l_A* 3i7n_A* 3i7o_A* 3i7p_A* 3i89_A* 3i8c_A* 3i8e_A* 2b5l_A 2b5m_A 2hye_A* 4a11_A* 4a0k_C* 4a0a_A* ...

Probab=90.89  E-value=9.4  Score=34.89  Aligned_cols=115  Identities=14%  Similarity=0.170  Sum_probs=75.5

Q ss_pred             eEEEEecCCCccceecccC-CcceEEEEEeCCCCEEEeecCCCeEEEEECCCCeee--eeeecCCCCeeeEEEccC----
Q 042146           81 TIRLWDVPTATSLKTLIGH-TNYVFCINFNPQSNRIVSDTFNETIRIWDIKTGKCL--KVLPAHSDPVTAIDFNRD----  153 (262)
Q Consensus        81 ~i~v~d~~~~~~~~~~~~~-~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~--~~~~~~~~~v~~~~~~~~----  153 (262)
                      .|++.+......+..+... ...|...+.+  +.+++.++ ++.+.++++..++..  ... .-...|.|+++.|.    
T Consensus       493 ~Irli~~~~~~~~~~w~~p~~~~I~~As~n--~~~vvva~-g~~l~~fel~~~~L~~~~~~-~l~~evscl~i~~~~~~~  568 (1158)
T 3ei3_A          493 SVRLVSQEPKALVSEWKEPQAKNISVASCN--SSQVVVAV-GRALYYLQIHPQELRQISHT-EMEHEVACLDITPLGDSN  568 (1158)
T ss_dssp             CEEEEESSSCCEEEEECCTTCCCCCEEEEC--SSEEEEEE-TTEEEEEEEETTEEEEEEEE-ECSSCEEEEECCCCSSST
T ss_pred             EEEEEECCCCeEEEEEECCCCCEEEEEEeC--CCEEEEEE-CCEEEEEEeeCCceeeeccc-CCCCceEEEEeecCCCCc
Confidence            5777776655555555533 3456666665  34666654 678888877655422  222 23568999999863    


Q ss_pred             --CCEEEEEeC-CCeEEEEeCCC-----------------------CCccEEEEEcCCCeEEEEec--CCCcee
Q 042146          154 --GTMIVTSSY-DGLYRILDAST-----------------------PNGKFILVGTLDNTLRLWNY--STRKIL  199 (262)
Q Consensus       154 --~~~l~~~~~-dg~i~~~d~~~-----------------------~~~~~l~~~~~dg~i~i~d~--~~~~~~  199 (262)
                        ++++++|.. |++++++++..                       ....+|..|-.||.+.-+.+  .+|++.
T Consensus       569 ~~s~~~aVg~~~d~tv~I~sL~~l~~~~~~~L~~~~~p~si~l~~~~~~~~L~igl~dG~l~~~~~d~~tg~l~  642 (1158)
T 3ei3_A          569 GLSPLCAIGLWTDISARILKLPSFELLHKEMLGGEIIPRSILMTTFESSHYLLCALGDGALFYFGLNIETGLLS  642 (1158)
T ss_dssp             TCCSEEEEEETTTTEEEEEETTTCCEEEEEECCSSCCEEEEEEEEETTEEEEEEEETTSEEEEEEECTTTCCEE
T ss_pred             ccccEEEEEECCCCEEEEEECCCCCeEEEEECCCCCCCcEEEEEEeCCCcEEEEEeCCCeEEEEEEcCCCCccc
Confidence              468999996 99999999876                       13457888889998765544  344443

>1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1

Probab=90.57  E-value=5.7  Score=31.89  Aligned_cols=155  Identities=11%  Similarity=0.128  Sum_probs=90.6

Q ss_pred             ccceecccC----cCceEEEEEccCCCeEEEec-------CCCeEEEeecCCCCCCCCC-------------CCC--CCc
Q 042146           14 TLTQTLNGH----LRAVSYVKFSHDGRLLTSSS-------AEKTLLTYSLSSISNFDST-------------PPS--PLQ   67 (262)
Q Consensus        14 ~~~~~~~~h----~~~v~~~~~~~~~~~l~s~~-------~d~~i~iw~~~~~~~~~~~-------------~~~--~~~   67 (262)
                      .+.+.+..|    ...|..-..+++.++++..+       -.|.+.+|+.+........             ...  .+.
T Consensus       137 ~P~kvFdR~~~L~~~QIInY~~d~~~kW~~l~GI~~~~~~v~G~mQLYS~er~~sQ~ieGhaa~F~~~~~~g~~~~~~lf  216 (494)
T 1bpo_A          137 QPVKMFDRHSSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRKVSQPIEGHAASFAQFKMEGNAEESTLF  216 (494)
T ss_dssp             CCEEEEECCGGGTTCEEEEEEECTTSSEEEEEEEEEETTEEEEEEEEEESTTCCEEEECCSEEEEEEEECTTCSSEEEEE
T ss_pred             CchhheecchhcccceEEEEEECCCCCeEEEEeecccCCcccceEEEeeccccccchheeeeeeeEEEecCCCCCCceEE
Confidence            455555554    35577777788999876543       2478889987653211000             000  001


Q ss_pred             cccCCccccccceeEEEEecCCC---ccce-----e--cc--cCCcceEEEEEeCCCCEEEeecCCCeEEEEECCCCeee
Q 042146           68 KFTGHEQGISDLATIRLWDVPTA---TSLK-----T--LI--GHTNYVFCINFNPQSNRIVSDTFNETIRIWDIKTGKCL  135 (262)
Q Consensus        68 ~~~~~~~~v~~~~~i~v~d~~~~---~~~~-----~--~~--~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~  135 (262)
                      .+.....   ..+.+++.++...   .+..     .  +.  ...+--.++.+++....++.-+.-|.|.+||++++.++
T Consensus       217 ~fa~r~~---~g~kLhi~Ei~~~~~~~~~f~kk~vdv~fppe~~~DFPvamqvs~kygviyviTK~G~i~lyDleTgt~i  293 (494)
T 1bpo_A          217 CFAVRGQ---AGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEKHDVVFLITKYGYIHLYDLETGTCI  293 (494)
T ss_dssp             EEEECST---TCCEEEEEECSCCCTTCCCCCCEEEECCCCTTSTTCCEEEEEEETTTTEEEEEETTSEEEEEETTTCCEE
T ss_pred             EEEEecC---CCcEEEEEEcCCCccCCCCccceeeeeeCCcccccCceeEEEecccCCEEEEEecCceEEEEecccceee
Confidence            1111100   0136777777432   1110     0  11  12344567889998888999999999999999999998


Q ss_pred             eeeecCCCCeeeEEEccCCCEEEEEeCCCeEEEEeC
Q 042146          136 KVLPAHSDPVTAIDFNRDGTMIVTSSYDGLYRILDA  171 (262)
Q Consensus       136 ~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~d~  171 (262)
                      ..-+-...+|..-+.+....-++.....|.|....+
T Consensus       294 ~~nrIs~~~iF~t~~~~~~~Gi~~Vnr~GqVl~v~v  329 (494)
T 1bpo_A          294 YMNRISGETIFVTAPHEATAGIIGVNRKGQVLSVCV  329 (494)
T ss_dssp             EEEECCSSCEEEEEEETTTTEEEEEETTCEEEEEEE
T ss_pred             eeecccCCceEEecccCCCCcEEEEccCceEEEEEE
Confidence            887766667766555555455555556666544443

>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B

Probab=90.49  E-value=9.2  Score=34.11  Aligned_cols=31  Identities=16%  Similarity=0.204  Sum_probs=26.9

Q ss_pred             cceEEEEEcCCCCeEEEeeecCCCcEEEEeecc
Q 042146          229 DPVISVASHPAKNIIASGALDNDRTMKIWTQEK  261 (262)
Q Consensus       229 ~~v~~~~~~p~~~~l~~~~~d~d~~i~iw~~~~  261 (262)
                      ..+.+++..++..++++-+  .|+++|+|++.+
T Consensus       236 ~~~~~~~~~~~~~~lftl~--~D~~LRiWsl~t  266 (950)
T 4gq2_M          236 NTIISMIFLSTYNVLVMLS--LDYKLKVLDLST  266 (950)
T ss_dssp             TCEEEEEEETTTTEEEEEE--TTCEEEEEETTT
T ss_pred             ceEEEEeecCCCcEEEEEE--CCCEEEEEECCC
Confidence            4577888888999999999  899999999865

>2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A*

Probab=89.97  E-value=8.5  Score=32.92  Aligned_cols=67  Identities=10%  Similarity=0.077  Sum_probs=38.6

Q ss_pred             EEEeC-CCCEEEeecCC------CeEEEEECCCCeeee--eeecCCCCeeeEEEccCCCEEEEEeCCC--eEEEEeCCC
Q 042146          106 INFNP-QSNRIVSDTFN------ETIRIWDIKTGKCLK--VLPAHSDPVTAIDFNRDGTMIVTSSYDG--LYRILDAST  173 (262)
Q Consensus       106 ~~~~~-~~~~l~~~~~d------g~i~vwd~~~~~~~~--~~~~~~~~v~~~~~~~~~~~l~~~~~dg--~i~~~d~~~  173 (262)
                      ++..+ ++.+++.|+.+      ..+.+||+.+.+-..  .+...... .+++...++.+++.|+.++  .+.+||..+
T Consensus       445 ~~~~~~~~~lyv~GG~~~~~~~~~dv~~yd~~t~~W~~~~~~p~~R~~-h~~~~~~~~~iyv~GG~~~~~~v~~yd~~t  522 (695)
T 2zwa_A          445 FTTISRNNQLLLIGGRKAPHQGLSDNWIFDMKTREWSMIKSLSHTRFR-HSACSLPDGNVLILGGVTEGPAMLLYNVTE  522 (695)
T ss_dssp             EEEETTTTEEEEECCBSSTTCBCCCCEEEETTTTEEEECCCCSBCCBS-CEEEECTTSCEEEECCBCSSCSEEEEETTT
T ss_pred             EEEEccCCEEEEEcCCCCCCCccccEEEEeCCCCcEEECCCCCCCccc-ceEEEEcCCEEEEECCCCCCCCEEEEECCC
Confidence            33343 67777777643      358889988754322  22111112 2233324778888887654  688888765

>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A

Probab=86.24  E-value=22  Score=33.40  Aligned_cols=153  Identities=12%  Similarity=0.145  Sum_probs=84.7

Q ss_pred             ccceecccC----cCceEEEEEccCCCeEEEec-------CCCeEEEeecCCCCCCCC---------------CCCCCCc
Q 042146           14 TLTQTLNGH----LRAVSYVKFSHDGRLLTSSS-------AEKTLLTYSLSSISNFDS---------------TPPSPLQ   67 (262)
Q Consensus        14 ~~~~~~~~h----~~~v~~~~~~~~~~~l~s~~-------~d~~i~iw~~~~~~~~~~---------------~~~~~~~   67 (262)
                      .+.+.+..|    ...|..-..+++.++++..|       -.|.+.+|+.+.......               ..+..+.
T Consensus       137 ~P~k~fdR~~~L~~~QIinY~~d~~~kW~~l~gi~~~~~~v~G~mQLyS~er~~sQ~iegha~~F~~~~~~~~~~~~~l~  216 (1630)
T 1xi4_A          137 QPVKMFDRHSSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRKVSQPIEGHAASFAQFKMEGNAEESTLF  216 (1630)
T ss_pred             ccHHHHhcchhcccCeeEEeeeCCCCCeEEEEeeccCCCcccceeeeeecccccchhhhHhHhhhheeccCCCCCCceEE
Confidence            455666655    45677778888888877433       358889998875322100               0001111


Q ss_pred             cccCCccccccceeEEEEecCCC---cccee-------cc--cCCcceEEEEEeCCCCEEEeecCCCeEEEEECCCCeee
Q 042146           68 KFTGHEQGISDLATIRLWDVPTA---TSLKT-------LI--GHTNYVFCINFNPQSNRIVSDTFNETIRIWDIKTGKCL  135 (262)
Q Consensus        68 ~~~~~~~~v~~~~~i~v~d~~~~---~~~~~-------~~--~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~  135 (262)
                      .+.....  . .+.+++.++...   .+...       ++  ...+-..++..++....++.-+.-|.|.+||++++.++
T Consensus       217 ~f~~~~~--~-g~kLhi~Ei~~~~~~~~~f~kk~~~~~~~~~~~~Dfpv~~~vs~k~g~iy~itk~G~~~~~d~~t~~~i  293 (1630)
T 1xi4_A          217 CFAVRGQ--A-GGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEKHDVVFLITKYGYIHLYDLETGTCI  293 (1630)
T ss_pred             EEEEecC--C-CceEEEEecCCCccCCCCCccccccccCCcccccCcceEEEeccccCEEEEEecCceEEEEecccchhh
Confidence            1111111  0 136777777432   11110       11  11233456778887788888889999999999999887


Q ss_pred             eeeecCCCCeeeEEEccCCCEEEEEeCCCeEEEE
Q 042146          136 KVLPAHSDPVTAIDFNRDGTMIVTSSYDGLYRIL  169 (262)
Q Consensus       136 ~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~  169 (262)
                      ..-+-...+|...+-++...-++.....|.|.-.
T Consensus       294 ~~~ris~~~iF~~~~~~~~~g~~~vnr~G~vl~v  327 (1630)
T 1xi4_A          294 YMNRISGETIFVTAPHEATAGIIGVNRKGQVLSV  327 (1630)
T ss_pred             hhccccCCceEEeccCCCCCceEEEcCCceEEEE
Confidence            6655445555544444333333333344544333

>2wg3_C Hedgehog-interacting protein; lipoprotein, development, membrane, secreted, protease, PALM hydrolase, developmental protein, autocatalytic cleavage; HET: NAG; 2.60A {Homo sapiens} PDB: 2wg4_B 2wfx_B 2wft_A 3ho3_A 3ho4_A 3ho5_A

Probab=85.50  E-value=13  Score=30.01  Aligned_cols=29  Identities=21%  Similarity=0.024  Sum_probs=21.9

Q ss_pred             CceEEEEEccCCC-eEEEecCCCeEEEeec
Q 042146           24 RAVSYVKFSHDGR-LLTSSSAEKTLLTYSL   52 (262)
Q Consensus        24 ~~v~~~~~~~~~~-~l~s~~~d~~i~iw~~   52 (262)
                      ..-+.|+|.|++. .|+++...|.|++++.
T Consensus        14 ~~P~~~a~~pdG~~rl~V~er~G~i~~~~~   43 (463)
T 2wg3_C           14 RQPVGALHSGDGSQRLFILEKEGYVKILTP   43 (463)
T ss_dssp             SSEEEEECCSSSSCCEEEEETTTEEEEECT
T ss_pred             CCceEEEECCCCCeEEEEEeCCceEEEEeC
Confidence            3457899999996 4555577899999854

>3zwu_A Alkaline phosphatase PHOX; hydrolase, beta-propeller, iron; 1.39A {Pseudomonas fluorescens}

Probab=85.20  E-value=4.7  Score=33.68  Aligned_cols=59  Identities=15%  Similarity=0.147  Sum_probs=43.1

Q ss_pred             eEEEEEeCCCCEEEeecCC------------CeEEEEECCCCeeeeeeecC-CCCeeeEEEccCCCEEEEEe
Q 042146          103 VFCINFNPQSNRIVSDTFN------------ETIRIWDIKTGKCLKVLPAH-SDPVTAIDFNRDGTMIVTSS  161 (262)
Q Consensus       103 v~~~~~~~~~~~l~~~~~d------------g~i~vwd~~~~~~~~~~~~~-~~~v~~~~~~~~~~~l~~~~  161 (262)
                      .--|+|+|.|+++++-..+            ..+.+.+..+++..+.+..+ ...++.++|+||++.|++.-
T Consensus       478 PDNL~fd~~G~LwI~eDg~~~~~~~~~~~gnn~~~~~~~~~g~~~rf~~~P~gaE~TG~~fspDg~tlfvni  549 (592)
T 3zwu_A          478 PDGLGFDKAGRLWILTDGDSSNAGDFAGMGNNQMLCADPATGEIRRFMVGPIGCEVTGISFSPDQKTLFVGI  549 (592)
T ss_dssp             EEEEEECTTCCEEEEECCCCCCSGGGTTTCSCEEEEECTTTCCEEEEEECCTTCEEEEEEECTTSSEEEEEE
T ss_pred             CcceEECCCCCEEEEecCCCcccccccccccceEEEEeCCCCeEEEEEeCCCCccCcCeeECCCCCEEEEEE
Confidence            4668999999977764322            34667777778776666554 45899999999998877653

>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}

Probab=82.02  E-value=4.5  Score=36.84  Aligned_cols=30  Identities=20%  Similarity=0.323  Sum_probs=25.5

Q ss_pred             CCccEEEEEcCCCeEEEEecCCCceeeEEe
Q 042146          174 PNGKFILVGTLDNTLRLWNYSTRKILKTYS  203 (262)
Q Consensus       174 ~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~  203 (262)
                      ++..++++-+.|+++|+|++.+++++.+..
T Consensus       247 ~~~~~lftL~~D~~LRiWsl~t~~~v~t~D  276 (1139)
T 4fhn_B          247 STYNVLVMLSLDYKLKVLDLSTNQCVETIE  276 (1139)
T ss_dssp             TTTTEEEEEBTTCEEEEEETTTTEEEEEEE
T ss_pred             CCccEEEEEeCCCEEEEEECCCCCeEEeec
Confidence            456789999999999999999998887754

>3s25_A Hypothetical 7-bladed beta-propeller-like protein; structural genomics, joint center F structural genomics, JCSG; 1.88A {Eubacterium rectale}

Probab=80.78  E-value=16  Score=27.50  Aligned_cols=87  Identities=10%  Similarity=0.077  Sum_probs=46.5

Q ss_pred             EEEeCCCCEEEeecC--------------CCeEEEEECCCCeeeeeeecCCCCeeeEEEccCCCEEEEEe--CC--CeEE
Q 042146          106 INFNPQSNRIVSDTF--------------NETIRIWDIKTGKCLKVLPAHSDPVTAIDFNRDGTMIVTSS--YD--GLYR  167 (262)
Q Consensus       106 ~~~~~~~~~l~~~~~--------------dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~--~d--g~i~  167 (262)
                      --+++++.+|+-...              ...|+..++..++.. .+..  .  ....|+++++.|+-..  .+  ..|.
T Consensus        58 ~~i~~~g~~Iyy~~~~~~~~~~~~~~~~n~~~Iy~i~~dg~~~~-~l~~--~--~~~~~s~~g~~Iy~~~~~~~~~~~Iy  132 (302)
T 3s25_A           58 MYINADKNYVYYVRNNNQKITSQTFFSYDRNSLCRIKRNGHGST-VLDP--D--PCIYASLIGNYIYYLHYDTQTATSLY  132 (302)
T ss_dssp             EEEEECSSEEEEEEECC------CCSSCCSEEEEEEETTSCCCE-EEEC--S--CEEEEEEETTEEEEEEESSSSCEEEE
T ss_pred             eeEEEcCCEEEEEECCCCcccccceeccCCCeEEEEeCCCCcce-Eeec--C--CccEEEEeCCEEEEEeecCCCCceEE
Confidence            345777887765433              246777787765432 2221  1  1236778888877765  23  3444


Q ss_pred             EEeCCC---------------CCccEEEEEc-CCCeEEEEecCCCc
Q 042146          168 ILDAST---------------PNGKFILVGT-LDNTLRLWNYSTRK  197 (262)
Q Consensus       168 ~~d~~~---------------~~~~~l~~~~-~dg~i~i~d~~~~~  197 (262)
                      .-++..               ++++.|+-.+ ....|++-++..+.
T Consensus       133 ~~~~dGs~~~~lt~~~~~~~~~~g~~iy~t~~g~~~Iy~~~l~g~~  178 (302)
T 3s25_A          133 RIRIDGEEKKKIKNHYLFTCNTSDRYFYYNNPKNGQLYRYDTASQS  178 (302)
T ss_dssp             EEETTSCCCEEEESSCCCCSEEETTEEEEECTTTCCEEEEETTTTE
T ss_pred             EEECCCCCeEEEeCCCceEeeEECCEEEEEeCCCceEEEEECCCCC
Confidence            445443               2334444333 24566666665444

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	262
d1tbga_	340	b.69.4.1 (A:) beta1-subunit of the signal-transduc	1e-24
d1tbga_	340	b.69.4.1 (A:) beta1-subunit of the signal-transduc	3e-19
d1tbga_	340	b.69.4.1 (A:) beta1-subunit of the signal-transduc	8e-13
d1tbga_	340	b.69.4.1 (A:) beta1-subunit of the signal-transduc	1e-05
d1vyhc1	317	b.69.4.1 (C:92-408) Platelet-activating factor ace	2e-24
d1vyhc1	317	b.69.4.1 (C:92-408) Platelet-activating factor ace	3e-23
d1vyhc1	317	b.69.4.1 (C:92-408) Platelet-activating factor ace	6e-18
d1erja_	388	b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yea	3e-20
d1erja_	388	b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yea	6e-18
d1erja_	388	b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yea	3e-09
d2ovrb2	342	b.69.4.1 (B:2365-2706) F-box/WD repeat-containing	8e-17
d2ovrb2	342	b.69.4.1 (B:2365-2706) F-box/WD repeat-containing	4e-14
d2ovrb2	342	b.69.4.1 (B:2365-2706) F-box/WD repeat-containing	1e-13
d2ovrb2	342	b.69.4.1 (B:2365-2706) F-box/WD repeat-containing	4e-11
d2ovrb2	342	b.69.4.1 (B:2365-2706) F-box/WD repeat-containing	9e-09
d1gxra_	337	b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Hum	8e-14
d1gxra_	337	b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Hum	2e-09
d1gxra_	337	b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Hum	1e-08
d1gxra_	337	b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Hum	4e-08
d1gxra_	337	b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Hum	1e-05
d1gxra_	337	b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Hum	0.001
d1nexb2	355	b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker'	3e-13
d1nexb2	355	b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker'	1e-09
d1nexb2	355	b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker'	5e-08
d1nexb2	355	b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker'	9e-08
d1nexb2	355	b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker'	2e-04
d1k8kc_	371	b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1	5e-13
d1k8kc_	371	b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1	9e-08
d1k8kc_	371	b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1	4e-07
d1k8kc_	371	b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1	1e-06
d1k8kc_	371	b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1	8e-06
d1k8kc_	371	b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1	5e-05
d1sq9a_	393	b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Bake	2e-12
d1sq9a_	393	b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Bake	1e-08
d1sq9a_	393	b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Bake	4e-08
d1sq9a_	393	b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Bake	4e-05
d1nr0a2	299	b.69.4.1 (A:313-611) Actin interacting protein 1 {	2e-12
d1nr0a2	299	b.69.4.1 (A:313-611) Actin interacting protein 1 {	2e-08
d1nr0a2	299	b.69.4.1 (A:313-611) Actin interacting protein 1 {	1e-07
d1nr0a2	299	b.69.4.1 (A:313-611) Actin interacting protein 1 {	8e-07
d1nr0a2	299	b.69.4.1 (A:313-611) Actin interacting protein 1 {	5e-05
d1p22a2	293	b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (be	2e-11
d1p22a2	293	b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (be	2e-10
d1p22a2	293	b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (be	3e-05
d1yfqa_	342	b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Bake	6e-11
d1yfqa_	342	b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Bake	5e-10
d1yfqa_	342	b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Bake	4e-08
d1yfqa_	342	b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Bake	2e-06
d1yfqa_	342	b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Bake	5e-06
d1yfqa_	342	b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Bake	1e-04
d1nr0a1	311	b.69.4.1 (A:2-312) Actin interacting protein 1 {Ne	7e-11
d1nr0a1	311	b.69.4.1 (A:2-312) Actin interacting protein 1 {Ne	4e-10
d1nr0a1	311	b.69.4.1 (A:2-312) Actin interacting protein 1 {Ne	5e-08
d1nr0a1	311	b.69.4.1 (A:2-312) Actin interacting protein 1 {Ne	1e-05
d1k32a3	360	b.69.9.1 (A:320-679) Tricorn protease domain 2 {Ar	3e-10
d1k32a3	360	b.69.9.1 (A:320-679) Tricorn protease domain 2 {Ar	7e-08
d1k32a3	360	b.69.9.1 (A:320-679) Tricorn protease domain 2 {Ar	2e-06
d1k32a3	360	b.69.9.1 (A:320-679) Tricorn protease domain 2 {Ar	1e-04
d1k32a3	360	b.69.9.1 (A:320-679) Tricorn protease domain 2 {Ar	0.001
d1k32a3	360	b.69.9.1 (A:320-679) Tricorn protease domain 2 {Ar	0.002
d1pgua2	287	b.69.4.1 (A:327-613) Actin interacting protein 1 {	2e-09
d1pgua2	287	b.69.4.1 (A:327-613) Actin interacting protein 1 {	6e-08
d1pgua2	287	b.69.4.1 (A:327-613) Actin interacting protein 1 {	5e-07
d1pgua2	287	b.69.4.1 (A:327-613) Actin interacting protein 1 {	8e-05
d1pgua2	287	b.69.4.1 (A:327-613) Actin interacting protein 1 {	8e-04
d1pgua1	325	b.69.4.1 (A:2-326) Actin interacting protein 1 {Ba	5e-09
d1pgua1	325	b.69.4.1 (A:2-326) Actin interacting protein 1 {Ba	3e-07
d1pgua1	325	b.69.4.1 (A:2-326) Actin interacting protein 1 {Ba	2e-05
d1pgua1	325	b.69.4.1 (A:2-326) Actin interacting protein 1 {Ba	6e-04
d1jmxb_	346	b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase	8e-09
d1jmxb_	346	b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase	1e-07
d1jmxb_	346	b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase	8e-05
d1jmxb_	346	b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase	4e-04
d1pbyb_	337	b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase	9e-09
d1pbyb_	337	b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase	1e-08
d1pbyb_	337	b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase	2e-05
d1pbyb_	337	b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase	5e-05
d1pbyb_	337	b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase	2e-04
d2bbkh_	355	b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {	1e-08
d2bbkh_	355	b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {	4e-08
d2bbkh_	355	b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {	2e-04
d1l0qa2	301	b.69.2.3 (A:1-301) Surface layer protein {Archaeon	6e-08
d1l0qa2	301	b.69.2.3 (A:1-301) Surface layer protein {Archaeon	2e-06
d1l0qa2	301	b.69.2.3 (A:1-301) Surface layer protein {Archaeon	5e-05
d1l0qa2	301	b.69.2.3 (A:1-301) Surface layer protein {Archaeon	5e-04
d1hzua2	426	b.70.2.1 (A:118-543) C-terminal (heme d1) domain o	7e-08
d1hzua2	426	b.70.2.1 (A:118-543) C-terminal (heme d1) domain o	5e-07
d1hzua2	426	b.70.2.1 (A:118-543) C-terminal (heme d1) domain o	3e-06
d1hzua2	426	b.70.2.1 (A:118-543) C-terminal (heme d1) domain o	0.001
d1mdah_	368	b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {	4e-07
d1mdah_	368	b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {	1e-05
d1mdah_	368	b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {	2e-04
d1qksa2	432	b.70.2.1 (A:136-567) C-terminal (heme d1) domain o	7e-07
d1qksa2	432	b.70.2.1 (A:136-567) C-terminal (heme d1) domain o	4e-05
d1qksa2	432	b.70.2.1 (A:136-567) C-terminal (heme d1) domain o	2e-04
d1ri6a_	333	b.69.11.1 (A:) Putative isomerase YbhE {Escherichi	4e-05
d1ri6a_	333	b.69.11.1 (A:) Putative isomerase YbhE {Escherichi	0.002
d1qnia2	441	b.69.3.1 (A:10-450) Nitrous oxide reductase, N-ter	3e-04
d2dg1a1	319	b.68.6.1 (A:6-324) Lactonase Drp35 {Staphylococcus	0.003

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 98.7 bits (244), Expect = 1e-24
 Identities = 51/290 (17%), Positives = 88/290 (30%), Gaps = 58/290 (20%)

Query: 2   SSDRSLESFRPYTLT--QTLNGHLRAVSYVKFSHDGRLLTSSSAEKTLLTYSLSSI---- 55
           S D  L  +  YT      +      V    ++  G  +     +     Y+L +     
Sbjct: 74  SQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSGNYVACGGLDNICSIYNLKTREGNV 133

Query: 56  ------SNFDSTPPSPLQKFTGHEQGISDLATIRLWDVPTATSLKTLIGHTNYVFCINFN 109
                 +                    S   T  LWD+ T     T  GHT  V  ++  
Sbjct: 134 RVSRELAGHTGYLSCCRFLDDNQIVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLA 193

Query: 110 PQSNRIVSDTFNETIRIWDIKTGKCLKVLPAHSDPVTAIDFNRDGTMIVTSSYDGLYRIL 169
           P +   VS   + + ++WD++ G C +    H   + AI F  +G    T S D   R+ 
Sbjct: 194 PDTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLF 253

Query: 170 D----------------------ASTPNGKFILVGTLDNTLRLWNYSTRKILKTYSGYTN 207
           D                      + + +G+ +L G  D    +W+          +G   
Sbjct: 254 DLRADQELMTYSHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDALKADRAGVLAG--- 310

Query: 208 SKYCISSTFSVTNGKYIVSHRDPVISVASHPAKNIIASGALDNDRTMKIW 257
                              H + V  +        +A+G+   D  +KIW
Sbjct: 311 -------------------HDNRVSCLGVTDDGMAVATGS--WDSFLKIW 339

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 83.6 bits (205), Expect = 3e-19
 Identities = 22/160 (13%), Positives = 46/160 (28%), Gaps = 33/160 (20%)

Query: 11  RPYTLTQTLNGHLRAVSYVKFSHDGRLLTSSSAEKTLLTYSLSSISNFDSTPPSPLQKFT 70
           R     QT  GH   ++ + F  +G    + S + T                        
Sbjct: 214 REGMCRQTFTGHESDINAICFFPNGNAFATGSDDATC----------------------- 250

Query: 71  GHEQGISDLATIRLWDVPTATSLKTLIGHTNYVFCINFNPQSNRIVSDTFNETIRIWDIK 130
                      +            +       +  ++F+     +++   +    +WD  
Sbjct: 251 ----------RLFDLRADQELMTYSHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDAL 300

Query: 131 TGKCLKVLPAHSDPVTAIDFNRDGTMIVTSSYDGLYRILD 170
                 VL  H + V+ +    DG  + T S+D   +I +
Sbjct: 301 KADRAGVLAGHDNRVSCLGVTDDGMAVATGSWDSFLKIWN 340

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 65.1 bits (157), Expect = 8e-13
 Identities = 36/266 (13%), Positives = 86/266 (32%), Gaps = 42/266 (15%)

Query: 17  QTLNGHLRAVSYVKFSHDGRLLTSSSAEKTLLTYSLSSISNFDSTPPSPLQKFTGHEQGI 76
           +TL GHL  +  + +  D RLL S+S +          +  +DS   + +         +
Sbjct: 49  RTLRGHLAKIYAMHWGTDSRLLVSASQDGK--------LIIWDSYTTNKVHAIPLRSSWV 100

Query: 77  SDLATIRLWDVPTATSLKTLIGHTNYVFCINFNPQSNRIVSDTFNETIRIWDIKTGKCLK 136
              A    +           + +   ++ +     + R+  +    T  +   +     +
Sbjct: 101 MTCA----YAPSGNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQ 156

Query: 137 VLPAHSDPVTAIDFNRDGTMIVTSSYDGLYRILDASTPNGKFILVGTLDNTLRLWNYSTR 196
           ++ +  D   A+     G    T +      +  +  P+ +  + G  D + +LW+    
Sbjct: 157 IVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREG 216

Query: 197 KILKTYSGYTNSKYCISSTFSVTNGKYIVS-------------------------HRDPV 231
              +T++G+ +    I   F   NG    +                             +
Sbjct: 217 MCRQTFTGHESDINAIC--FF-PNGNAFATGSDDATCRLFDLRADQELMTYSHDNIICGI 273

Query: 232 ISVASHPAKNIIASGALDNDRTMKIW 257
            SV+   +  ++ +G   +D    +W
Sbjct: 274 TSVSFSKSGRLLLAG--YDDFNCNVW 297

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 43.6 bits (101), Expect = 1e-05
 Identities = 15/85 (17%), Positives = 31/85 (36%), Gaps = 1/85 (1%)

Query: 133 KCLKVLPAHSDPVTAIDFNRDGTMIVTSSYDGLYRILDASTPNGKFILVGTLDNTLRL-W 191
           +  + L  H   + A+ +  D  ++V++S DG   I D+ T N    +       +   +
Sbjct: 46  RTRRTLRGHLAKIYAMHWGTDSRLLVSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAY 105

Query: 192 NYSTRKILKTYSGYTNSKYCISSTF 216
             S   +         S Y + +  
Sbjct: 106 APSGNYVACGGLDNICSIYNLKTRE 130

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 97.5 bits (241), Expect = 2e-24
 Identities = 49/191 (25%), Positives = 84/191 (43%), Gaps = 27/191 (14%)

Query: 7   LESFRPYTLTQTLNGHLRAVSYVKFSHDGRLLTSSSAEKTLLTYSLSS------------ 54
           +   +     +T  GH   V  V+ + DG L+ S S ++T+  + +++            
Sbjct: 127 MWEVQTGYCVKTFTGHREWVRMVRPNQDGTLIASCSNDQTVRVWVVATKECKAELREHRH 186

Query: 55  ---------------ISNFDSTPPSPLQKFTGHEQGISDLATIRLWDVPTATSLKTLIGH 99
                          IS    +      K        S   TI++WDV T   L TL+GH
Sbjct: 187 VVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCLMTLVGH 246

Query: 100 TNYVFCINFNPQSNRIVSDTFNETIRIWDIKTGKCLKVLPAHSDPVTAIDFNRDGTMIVT 159
            N+V  + F+     I+S   ++T+R+WD K  +C+K L AH   VT++DF++    +VT
Sbjct: 247 DNWVRGVLFHSGGKFILSCADDKTLRVWDYKNKRCMKTLNAHEHFVTSLDFHKTAPYVVT 306

Query: 160 SSYDGLYRILD 170
            S D   ++ +
Sbjct: 307 GSVDQTVKVWE 317

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 94.0 bits (232), Expect = 3e-23
 Identities = 64/319 (20%), Positives = 119/319 (37%), Gaps = 91/319 (28%)

Query: 17  QTLNGHLRAVSYVKFSHDGRLLTSSSAEKTLLTYSLSSISNFDSTPPSPLQKFTGHEQGI 76
             L+GH   V+ V F     ++ S+S + T+  +   +            +   GH   +
Sbjct: 11  YALSGHRSPVTRVIFHPVFSVMVSASEDATIKVWDYET--------GDFERTLKGHTDSV 62

Query: 77  SDLATIRLWDVP---------------TATSLKTLIGHTNYVFCINFNPQSNRIVSDTFN 121
            D++      +                    ++T+ GH + V  ++  P  + IVS + +
Sbjct: 63  QDISFDHSGKLLASCSADMTIKLWDFQGFECIRTMHGHDHNVSSVSIMPNGDHIVSASRD 122

Query: 122 ETIRIWDIKTGKCLKVLPAHSDPVTAIDFNRDGTMIVTSSYDGLYRILDAST-------- 173
           +TI++W+++TG C+K    H + V  +  N+DGT+I + S D   R+   +T        
Sbjct: 123 KTIKMWEVQTGYCVKTFTGHREWVRMVRPNQDGTLIASCSNDQTVRVWVVATKECKAELR 182

Query: 174 --------------------------------PNGKFILVGTLDNTLRLWNYSTRKILKT 201
                                             G F+L G+ D T+++W+ ST   L T
Sbjct: 183 EHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCLMT 242

Query: 202 YSGYTNSKYCISSTFSVTNGKYIVS-----------------------HRDPVISVASHP 238
             G+ N    +      + GK+I+S                       H   V S+  H 
Sbjct: 243 LVGHDN---WVRGVLFHSGGKFILSCADDKTLRVWDYKNKRCMKTLNAHEHFVTSLDFHK 299

Query: 239 AKNIIASGALDNDRTMKIW 257
               + +G++D   T+K+W
Sbjct: 300 TAPYVVTGSVDQ--TVKVW 316

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 79.4 bits (194), Expect = 6e-18
 Identities = 45/241 (18%), Positives = 83/241 (34%), Gaps = 67/241 (27%)

Query: 83  RLWDVPTATSLKTLIGHTNYVFCINFNPQSNRIVSDTFNETIRIWDIKTGKCLKVLPAHS 142
           + W  P       L GH + V  + F+P  + +VS + + TI++WD +TG   + L  H+
Sbjct: 1   KEWI-PRPPEKYALSGHRSPVTRVIFHPVFSVMVSASEDATIKVWDYETGDFERTLKGHT 59

Query: 143 DPVTAI------------------------------------------DFNRDGTMIVTS 160
           D V  I                                              +G  IV++
Sbjct: 60  DSVQDISFDHSGKLLASCSADMTIKLWDFQGFECIRTMHGHDHNVSSVSIMPNGDHIVSA 119

Query: 161 SYDGLYRILDAST--------------------PNGKFILVGTLDNTLRLWNYSTRKILK 200
           S D   ++ +  T                     +G  I   + D T+R+W  +T++   
Sbjct: 120 SRDKTIKMWEVQTGYCVKTFTGHREWVRMVRPNQDGTLIASCSNDQTVRVWVVATKECKA 179

Query: 201 TYSGYTNSKYCISSTFSVTNGKYIVSHRDPVISVASHPAKNIIASGALDNDRTMKIWTQE 260
               + +   CIS  ++  +    +S      +  S      + SG+   D+T+K+W   
Sbjct: 180 ELREHRHVVECIS--WAPESSYSSISEATGSETKKSGKPGPFLLSGS--RDKTIKMWDVS 235

Query: 261 K 261
            
Sbjct: 236 T 236

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 388

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 86.8 bits (213), Expect = 3e-20
 Identities = 53/307 (17%), Positives = 99/307 (32%), Gaps = 64/307 (20%)

Query: 1   MSSDRSLESFRPYTLTQTLNGHLRAVSYVKFSHDGRLLTSSSAEKTLLTYSLSSISNFDS 60
           +S D +         T +       +  V FS DG+ L + + ++ +  + + +      
Sbjct: 99  LSDDSAANKDPENLNTSSSPSSDLYIRSVCFSPDGKFLATGAEDRLIRIWDIENRKIVMI 158

Query: 61  TPPSPLQKF-------TGHEQGISDLATIRLWDVPTATSLKTLIGHTNYVFCINFNPQSN 113
                   +              S   T+R+WD+ T     TL                 
Sbjct: 159 LQGHEQDIYSLDYFPSGDKLVSGSGDRTVRIWDLRTGQCSLTLSIEDGVTTVAVSPGDGK 218

Query: 114 RIVSDTFNETIRIWDIKTGKC-------LKVLPAHSDPVTAIDFNRDGTMIVTSSYDGLY 166
            I + + +  +R+WD +TG          +    H D V ++ F RDG  +V+ S D   
Sbjct: 219 YIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSLDRSV 278

Query: 167 RILD--------------------------------ASTPNGKFILVGTLDNTLRLWNYS 194
           ++ +                                A+T N ++IL G+ D  +  W+  
Sbjct: 279 KLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQNDEYILSGSKDRGVLFWDKK 338

Query: 195 TRKILKTYSGYTNSKYCISSTFSVTNGKYIVSHRDPVISVASHPAKNIIASGALDNDRTM 254
           +   L    G+ NS   +                      +  P  N+ A+G+   D   
Sbjct: 339 SGNPLLMLQGHRNSVISV----------------AVANGSSLGPEYNVFATGS--GDCKA 380

Query: 255 KIWTQEK 261
           +IW  +K
Sbjct: 381 RIWKYKK 387

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 388

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 80.2 bits (196), Expect = 6e-18
 Identities = 35/183 (19%), Positives = 67/183 (36%), Gaps = 41/183 (22%)

Query: 16  TQTLNGHLRAVSYVKFSHDGRLLTSSSAEKTLLTYSLSSISNFDSTPPSPLQKFTGHEQG 75
            ++  GH  +V  V F+ DG+ + S S ++++  ++L + +N                  
Sbjct: 247 NESGTGHKDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQNANN------------------ 288

Query: 76  ISDLATIRLWDVPTATSLKTLIGHTNYVFCINFNPQSNRIVSDTFNETIRIWDIKTGKCL 135
                        + T   T IGH ++V  +        I+S + +  +  WD K+G  L
Sbjct: 289 -----KSDSKTPNSGTCEVTYIGHKDFVLSVATTQNDEYILSGSKDRGVLFWDKKSGNPL 343

Query: 136 KVLPAHSDPVTAIDFNRDGTMIVTSSYDGLYRILDASTPNGKFILVGTLDNTLRLWNYST 195
            +L  H + V ++      ++                 P       G+ D   R+W Y  
Sbjct: 344 LMLQGHRNSVISVAVANGSSL----------------GPEYNVFATGSGDCKARIWKY-- 385

Query: 196 RKI 198
           +KI
Sbjct: 386 KKI 388

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 388

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 54.4 bits (129), Expect = 3e-09
 Identities = 20/150 (13%), Positives = 49/150 (32%), Gaps = 32/150 (21%)

Query: 102 YVFCINFNPQSN-RIVSDTFNETIRIWDIKTGKCLKV----LPAHSDPVTAIDFNRDGTM 156
             F ++ + QS    +    N+   +++    + + V       H+  V  + F+ DG  
Sbjct: 17  PPFLLDLDSQSVPDALKKQTNDYYILYNPALPREIDVELHKSLDHTSVVCCVKFSNDGEY 76

Query: 157 IVTSSYDGLYRILDASTPNGKFILVGTLDNTLRLWNYSTRKILKTYSGYTNSKYCISSTF 216
           + T                         + T +++  S   ++   S  + +     +  
Sbjct: 77  LATGC-----------------------NKTTQVYRVSDGSLVARLSDDSAANKDPENLN 113

Query: 217 SVTNGKYIVSHRDPVISVASHPAKNIIASG 246
           + ++     S    + SV   P    +A+G
Sbjct: 114 TSSSP----SSDLYIRSVCFSPDGKFLATG 139

>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 76.8 bits (187), Expect = 8e-17
 Identities = 40/198 (20%), Positives = 78/198 (39%), Gaps = 42/198 (21%)

Query: 81  TIRLWDVPTATSLKTLIGHTNYVFCINFNPQSNRIVSDTFNETIRIWDIKTGKCLKVLPA 140
            +++WD  T T L TL GHTN V+ + F+     +VS + + +IR+WD++TG C+  L  
Sbjct: 158 MVKVWDPETETCLHTLQGHTNRVYSLQFDG--IHVVSGSLDTSIRVWDVETGNCIHTLTG 215

Query: 141 HSDPVTAIDFNRDGTMIVTSSYDGLYRILDAS---------------------TPNGKFI 179
           H    + ++      ++V+ + D   +I D                         N  F+
Sbjct: 216 HQSLTSGMEL--KDNILVSGNADSTVKIWDIKTGQCLQTLQGPNKHQSAVTCLQFNKNFV 273

Query: 180 LVGTLDNTLRLWNYSTRKILKTYSGYTNSKYCISSTFSVTNGKYIVSHRDPVISVASHPA 239
           +  + D T++LW+  T + ++      +                       V  + +   
Sbjct: 274 ITSSDDGTVKLWDLKTGEFIRNLVTLESG-----------------GSGGVVWRIRASNT 316

Query: 240 KNIIASGALDNDRTMKIW 257
           K + A G+ +     K+ 
Sbjct: 317 KLVCAVGSRNGTEETKLL 334

>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 68.7 bits (166), Expect = 4e-14
 Identities = 22/72 (30%), Positives = 34/72 (47%), Gaps = 1/72 (1%)

Query: 85  WDVPTATSLKTLIGHTNYVFCINFNPQSNRIVSDTFNETIRIWDIKTGKCLKVLPAHSDP 144
           W      S K L GH ++V         NRIVS + + T+++W   TGKCL+ L  H+  
Sbjct: 1   WRRGELKSPKVLKGHDDHVITC-LQFCGNRIVSGSDDNTLKVWSAVTGKCLRTLVGHTGG 59

Query: 145 VTAIDFNRDGTM 156
           V +     +  +
Sbjct: 60  VWSSQMRDNIII 71

>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 67.5 bits (163), Expect = 1e-13
 Identities = 37/207 (17%), Positives = 71/207 (34%), Gaps = 47/207 (22%)

Query: 7   LESFRPYTLTQTLNGHLRAVSYVKFSHDGRLLTSSSAEKTLLTYSLSSISNFDSTPPSPL 66
           +      T   TL GH           DG  + S S + +        I  +D    + +
Sbjct: 161 VWDPETETCLHTLQGH--TNRVYSLQFDGIHVVSGSLDTS--------IRVWDVETGNCI 210

Query: 67  QKFTGHEQGISDLA-------------TIRLWDVPTATSLKTLIGHTNYV-FCINFNPQS 112
              TGH+   S +              T+++WD+ T   L+TL G   +           
Sbjct: 211 HTLTGHQSLTSGMELKDNILVSGNADSTVKIWDIKTGQCLQTLQGPNKHQSAVTCLQFNK 270

Query: 113 NRIVSDTFNETIRIWDIKTGKCLKVLPA-----HSDPVTAIDFNRDGTMIVTSSYDGLYR 167
           N +++ + + T+++WD+KTG+ ++ L           V  I  +    +    S +    
Sbjct: 271 NFVITSSDDGTVKLWDLKTGEFIRNLVTLESGGSGGVVWRIRASNTKLVCAVGSRN---- 326

Query: 168 ILDASTPNGKFILVGTLDNTLRLWNYS 194
                         GT +  L + ++ 
Sbjct: 327 --------------GTEETKLLVLDFD 339

>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 60.2 bits (144), Expect = 4e-11
 Identities = 47/247 (19%), Positives = 88/247 (35%), Gaps = 45/247 (18%)

Query: 12  PYTLTQTLNGHLRAVSYVKFSHDGRLLTSSSAEKTLLTYSLSSISNFDSTPPSPLQKFTG 71
                + L GH   V        G  + S S + TL  +S  +           L+   G
Sbjct: 5   ELKSPKVLKGHDDHVITC-LQFCGNRIVSGSDDNTLKVWSAVT--------GKCLRTLVG 55

Query: 72  HEQGISDLATIRLWDVPTATSLKTLIGHTNYVFCINFNPQSNRIVSD-----------TF 120
           H  G+          +  +T     + +     CI+        V             + 
Sbjct: 56  HTGGVWSSQMRDNIIISGSTDRTLKVWNAETGECIHTLYGHTSTVRCMHLHEKRVVSGSR 115

Query: 121 NETIRIWDIKTGKCLKVLPAHSDPVTAIDFNRDGTMIVTSSYDGLYRILDAST------- 173
           + T+R+WDI+TG+CL VL  H   V  + ++     +V+ +YD + ++ D  T       
Sbjct: 116 DATLRVWDIETGQCLHVLMGHVAAVRCVQYDGR--RVVSGAYDFMVKVWDPETETCLHTL 173

Query: 174 -----------PNGKFILVGTLDNTLRLWNYSTRKILKTYSGYTNSKYCISSTFSVTNGK 222
                       +G  ++ G+LD ++R+W+  T   + T +G+ +    +          
Sbjct: 174 QGHTNRVYSLQFDGIHVVSGSLDTSIRVWDVETGNCIHTLTGHQSLTSGMEL-----KDN 228

Query: 223 YIVSHRD 229
            +VS   
Sbjct: 229 ILVSGNA 235

>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 52.9 bits (125), Expect = 9e-09
 Identities = 22/87 (25%), Positives = 29/87 (33%), Gaps = 23/87 (26%)

Query: 127 WDIKTGKCLKVLPAHSDPVTAIDFNRDGTMIVTSSYDGLYRILDASTPNGKFILVGTLDN 186
           W     K  KVL  H D V        G  IV+ S D                       
Sbjct: 1   WRRGELKSPKVLKGHDDHVITC-LQFCGNRIVSGSDDN---------------------- 37

Query: 187 TLRLWNYSTRKILKTYSGYTNSKYCIS 213
           TL++W+  T K L+T  G+T   +   
Sbjct: 38  TLKVWSAVTGKCLRTLVGHTGGVWSSQ 64

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 337

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 67.9 bits (164), Expect = 8e-14
 Identities = 16/72 (22%), Positives = 25/72 (34%), Gaps = 1/72 (1%)

Query: 99  HTNYVFCINFNPQSNRIVSDTFNETIRIWDIKTGKCLKVLPAHSDPVTAIDFNRDGTMIV 158
           H + V  + F       VS   +  +  W    G  +      S  V + D + D   IV
Sbjct: 264 HESCVLSLKFAYCGKWFVSTGKDNLLNAWRTPYGASIFQS-KESSSVLSCDISVDDKYIV 322

Query: 159 TSSYDGLYRILD 170
           T S D    + +
Sbjct: 323 TGSGDKKATVYE 334

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 337

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 55.2 bits (131), Expect = 2e-09
 Identities = 12/95 (12%), Positives = 27/95 (28%), Gaps = 7/95 (7%)

Query: 75  GISDLATIRLWDVPTATSLKTLIGHTNYVFCINFNPQSNRIVSDTFNETIRIWDIKTGKC 134
                A I       A  + TL  H   V  +  +  +  + +      +++WDI     
Sbjct: 27  PFPPDALIGPGIPRHARQINTL-NHGEVVCAVTISNPTRHVYTGG-KGCVKVWDISHPGN 84

Query: 135 LKVL-----PAHSDPVTAIDFNRDGTMIVTSSYDG 164
              +         + + +     DG  ++      
Sbjct: 85  KSPVSQLDCLNRDNYIRSCKLLPDGCTLIVGGEAS 119

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 337

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 52.1 bits (123), Expect = 1e-08
 Identities = 6/49 (12%), Positives = 20/49 (40%), Gaps = 1/49 (2%)

Query: 81  TIRLWDVPTATSLKTLIGHTNYVFCINFNPQSNRIVSDTFNETIRIWDI 129
            +  W  P   S+      ++ V   + +     IV+ + ++   ++++
Sbjct: 288 LLNAWRTPYGASIFQS-KESSSVLSCDISVDDKYIVTGSGDKKATVYEV 335

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 337

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 51.0 bits (120), Expect = 4e-08
 Identities = 26/281 (9%), Positives = 54/281 (19%), Gaps = 52/281 (18%)

Query: 4   DRSLESFRPYTLTQTLNGHLRAVSYVKFSHDGRLLTSSSAEKTLLTYSLSSISNFDSTPP 63
           D S    +              +   K   DG  L       TL  + L++ +       
Sbjct: 78  DISHPGNKSPVSQLDCLNRDNYIRSCKLLPDGCTLIVGGEASTLSIWDLAAPTPRIKAEL 137

Query: 64  SPLQKFTGHEQGISDLATIRLWDVPTATSLKTLIGHTNYVFCINFNPQSNRIVSDTFNET 123
           +             D             ++  L   T           ++ I        
Sbjct: 138 TSSAPACYALAISPDSKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDISNDGTK 197

Query: 124 IRIWD--------IKTGKCLKVLPAHSDPVTAIDFNRDGTMIVTSSYDGLYRILD----- 170
           +                         +  + ++ +   G  +          +L      
Sbjct: 198 LWTGGLDNTVRSWDLREGRQLQQHDFTSQIFSLGYCPTGEWLAVGMESSNVEVLHVNKPD 257

Query: 171 --------------ASTPNGKFILVGTLDNTLRLWNYSTRKILKTYSGYTNSKYCISSTF 216
                              GK+ +    DN L  W       +                 
Sbjct: 258 KYQLHLHESCVLSLKFAYCGKWFVSTGKDNLLNAWRTPYGASIFQS-------------- 303

Query: 217 SVTNGKYIVSHRDPVISVASHPAKNIIASGALDNDRTMKIW 257
                         V+S         I +G+   D+   ++
Sbjct: 304 ---------KESSSVLSCDISVDDKYIVTGS--GDKKATVY 333

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 337

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 43.6 bits (101), Expect = 1e-05
 Identities = 16/162 (9%), Positives = 39/162 (24%), Gaps = 42/162 (25%)

Query: 98  GHTNYVFCINFNPQSNRIVSDTFNETIRIWDIKTGKCLKVLPAHSDPVTAIDFNRDGTMI 157
               Y F +  + Q  + V    +  I     +  + +  L  H + V A+  +     +
Sbjct: 9   SKPAYSFHVTADGQM-QPVPFPPDALIGPGIPRHARQINTL-NHGEVVCAVTISNPTRHV 66

Query: 158 VTSSYDGLYRILDASTPNGKFILVGTLDNTLRLWNYSTRKILKTYSGYTNSKYCISSTFS 217
            T                            +++W+ S        S              
Sbjct: 67  YTGG-----------------------KGCVKVWDISHPGNKSPVSQLD----------- 92

Query: 218 VTNGKYIVSHRDPVISVASHPAKNIIASGALDNDRTMKIWTQ 259
                  ++  + + S    P    +  G   +  ++     
Sbjct: 93  ------CLNRDNYIRSCKLLPDGCTLIVGGEASTLSIWDLAA 128

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 337

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.5 bits (85), Expect = 0.001
 Identities = 10/101 (9%), Positives = 23/101 (22%), Gaps = 41/101 (40%)

Query: 21  GHLRAVSYVKFSHDGRLLTSSSAEKTLLTYSLSSISNFDSTPPSPLQKFTGHEQGISDLA 80
            H   V  V  S+  R + +                                        
Sbjct: 49  NHGEVVCAVTISNPTRHVYTGGKG------------------------------------ 72

Query: 81  TIRLWDVPTATSLKTL-----IGHTNYVFCINFNPQSNRIV 116
            +++WD+    +   +     +   NY+      P    ++
Sbjct: 73  CVKVWDISHPGNKSPVSQLDCLNRDNYIRSCKLLPDGCTLI 113

>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 355

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Cdc4 propeller domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 66.5 bits (160), Expect = 3e-13
 Identities = 26/143 (18%), Positives = 48/143 (33%), Gaps = 22/143 (15%)

Query: 95  TLIGHTNYVFCINFNPQSNRIVSDTFNETIRIWDIKTGKCLKVLPAHSDPVTAIDFNRDG 154
           TL GH   V       + N +++   ++ IR++D    K L  L  H   V A+ +   G
Sbjct: 7   TLRGHMTSVITC-LQFEDNYVITGADDKMIRVYDSINKKFLLQLSGHDGGVWALKYAHGG 65

Query: 155 TMIVTSSYDGLYRILDAS---------------------TPNGKFILVGTLDNTLRLWNY 193
            ++  S+   +                              N K+I+ G+ DNTL +W  
Sbjct: 66  ILVSGSTDRTVRVWDIKKGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKL 125

Query: 194 STRKILKTYSGYTNSKYCISSTF 216
                +  +    +      +  
Sbjct: 126 PKESSVPDHGEEHDYPLVFHTPE 148

>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 355

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Cdc4 propeller domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 55.3 bits (131), Expect = 1e-09
 Identities = 12/71 (16%), Positives = 30/71 (42%), Gaps = 2/71 (2%)

Query: 99  HTNYVFCINFNPQSNRIVSDTFNETIRIWDIKTGKCLKV-LPAHSDPVTAIDFNRDGTMI 157
           H   +  I     S+ I+         I+++++GK +   +   +D + +++F    T++
Sbjct: 280 HHTNLSAITTFYVSDNILVSGSENQFNIYNLRSGKLVHANILKDADQIWSVNFKGK-TLV 338

Query: 158 VTSSYDGLYRI 168
                DG   +
Sbjct: 339 AAVEKDGQSFL 349

>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 355

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Cdc4 propeller domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 50.7 bits (119), Expect = 5e-08
 Identities = 35/283 (12%), Positives = 84/283 (29%), Gaps = 31/283 (10%)

Query: 2   SSDRSLESFRPYT--LTQTLNGHLRAVSYVKFSHDGRLLTSSSAEKTLLTYSLSSISNFD 59
           + D+ +  +          L+GH   V  +K++H G L++ S+     +           
Sbjct: 30  ADDKMIRVYDSINKKFLLQLSGHDGGVWALKYAHGGILVSGSTDRTVRVWDIKKGCCTHV 89

Query: 60  STPPSPLQKFTGHEQGI--------SDLATIRLWDVPTATSLKTLIGHTNYVFCINFNPQ 111
               +   +     +          S   T+ +W +P  +S+       +Y    +   +
Sbjct: 90  FEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEE 149

Query: 112 SNRIVSDTFNETIRIWDIKTGKCLKVLPAHSDPVTAIDFNRDGTMIVTSSYDGLYRILDA 171
           +   V         +  +     + V     D    +        +   S          
Sbjct: 150 NPYFVGVLRGHMASVRTVSGHGNIVV-SGSYDNTLIVWDVAQMKCLYILSGHTDRIYSTI 208

Query: 172 STPNGKFILVGTLDNTLRLWNYSTRKILKTYSGYTNSKY-----------------CISS 214
                K  +  ++D T+R+W+    +++ T  G+T                         
Sbjct: 209 YDHERKRCISASMDTTIRIWDLENGELMYTLQGHTALVGLLRLSDKFLVSAAADGSIRGW 268

Query: 215 TFSVTNGKYIVSHRDPVISVASHPAKNIIASGALDNDRTMKIW 257
             +  + K+   H +       + + NI+ SG+   +    I+
Sbjct: 269 DANDYSRKFSYHHTNLSAITTFYVSDNILVSGS---ENQFNIY 308

>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 355

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Cdc4 propeller domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 49.9 bits (117), Expect = 9e-08
 Identities = 34/210 (16%), Positives = 69/210 (32%), Gaps = 26/210 (12%)

Query: 18  TLNGHLRAVSYVKFSHDGRLLTSSSAEKTLLTYSLSSISNFDSTPPSPLQKFTGHEQGIS 77
           TL GH+ +V       +   + + + +K +  Y   +           L + +GH+ G+ 
Sbjct: 7   TLRGHMTSVITC-LQFEDNYVITGADDKMIRVYDSIN--------KKFLLQLSGHDGGVW 57

Query: 78  DLA----------------TIRLWDVPTATSLKTLIGHTNYVFCINFNPQSNRIVSDTFN 121
            L                  +        T +      T     I        IV+ + +
Sbjct: 58  ALKYAHGGILVSGSTDRTVRVWDIKKGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRD 117

Query: 122 ETIRIWDIKTGKCLKVLPAHSDPVTAIDFNRDGTMIVTSSYDGLYRILDASTPNGKFILV 181
            T+ +W +     +       D         +    V      +  +    + +G  ++ 
Sbjct: 118 NTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHMASV-RTVSGHGNIVVS 176

Query: 182 GTLDNTLRLWNYSTRKILKTYSGYTNSKYC 211
           G+ DNTL +W+ +  K L   SG+T+  Y 
Sbjct: 177 GSYDNTLIVWDVAQMKCLYILSGHTDRIYS 206

>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 355

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Cdc4 propeller domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 40.3 bits (92), Expect = 2e-04
 Identities = 35/193 (18%), Positives = 70/193 (36%), Gaps = 38/193 (19%)

Query: 81  TIRLWDVPTATSLKTLIGHTNYVFCINFNPQSNRIVSDTFNETIRIWDIKTGKCLKVLPA 140
           T+ +WDV     L  L GHT+ ++   ++ +  R +S + + TIRIWD++ G+ +  L  
Sbjct: 182 TLIVWDVAQMKCLYILSGHTDRIYSTIYDHERKRCISASMDTTIRIWDLENGELMYTLQG 241

Query: 141 HSDPVTAIDFNRDGTMIVTSSYDGLYRILD----------------ASTPNGKFILVGTL 184
           H+  V  +  +    +   +         +                 +      ILV   
Sbjct: 242 HTALVGLLRLSDKFLVSAAADGSIRGWDANDYSRKFSYHHTNLSAITTFYVSDNILVSGS 301

Query: 185 DNTLRLWNYSTRKILKTYSGYTNSKYCISSTFSVTNGKYIVSHRDPVISVASHPAKNIIA 244
           +N   ++N  + K++                        I+   D + SV     K ++A
Sbjct: 302 ENQFNIYNLRSGKLVHA---------------------NILKDADQIWSVNFKG-KTLVA 339

Query: 245 SGALDNDRTMKIW 257
           +   D    ++I 
Sbjct: 340 AVEKDGQSFLEIL 352

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} Length = 371

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 65.6 bits (158), Expect = 5e-13
 Identities = 23/127 (18%), Positives = 36/127 (28%), Gaps = 2/127 (1%)

Query: 103 VFCINFNPQSNRIVSDTFNETIRIWDIKTGK--CLKVLPAHSDPVTAIDFNRDGTMIVTS 160
           + C  +N    +I     N  + I++    K   +  L  H+  VT +D+  D   IVT 
Sbjct: 10  ISCHAWNKDRTQIAICPNNHEVHIYEKSGNKWVQVHELKEHNGQVTGVDWAPDSNRIVTC 69

Query: 161 SYDGLYRILDASTPNGKFILVGTLDNTLRLWNYSTRKILKTYSGYTNSKYCISSTFSVTN 220
             D    +        K  LV    N             K   G  +    I       +
Sbjct: 70  GTDRNAYVWTLKGRTWKPTLVILRINRAARCVRWAPNEKKFAVGSGSRVISICYFEQEND 129

Query: 221 GKYIVSH 227
                  
Sbjct: 130 WWVCKHI 136

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} Length = 371

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 49.9 bits (117), Expect = 9e-08
 Identities = 32/319 (10%), Positives = 82/319 (25%), Gaps = 77/319 (24%)

Query: 13  YTLTQTLNGHLRAVSYVKFSHDGRLLTSSSAEKTLLTYSLSSISNFDSTPPSPLQKFTGH 72
           +     L  H   V+ V ++ D   + +   ++    ++L   +   +     + +    
Sbjct: 41  WVQVHELKEHNGQVTGVDWAPDSNRIVTCGTDRNAYVWTLKGRTWKPTLVILRINRAARC 100

Query: 73  EQGISDLAT---------IRLWDVPTATSLKTLIGHTNY----VFCINFNPQSNRIVSDT 119
            +   +            I +                      V  ++++P S  + + +
Sbjct: 101 VRWAPNEKKFAVGSGSRVISICYFEQENDWWVCKHIKKPIRSTVLSLDWHPNSVLLAAGS 160

Query: 120 FNETIRIWDIKTGK------------------CLKVLPAHSDPVTAIDFNRDGTMIVTSS 161
            +   RI+     +                   +    +    V  + F+ +G+ +   S
Sbjct: 161 CDFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCGWVHGVCFSANGSRVAWVS 220

Query: 162 YDGLYRILD--------------------ASTPNGKFILVGTLDNTLRLWNYSTRKILKT 201
           +D    + D                            +  G  D    L+ Y +     +
Sbjct: 221 HDSTVCLADADKKMAVATLASETLPLLAVTFITESSLVAAGH-DCFPVLFTYDSAAGKLS 279

Query: 202 YSGYTNSKYCISS-------TFSVTNGKYIVS------------HRDPVISVASHP---- 238
           + G  +     S         F   + K                H++ V  ++       
Sbjct: 280 FGGRLDVPKQSSQRGLTARERFQNLDKKASSEGSAAAGAGLDSLHKNSVSQISVLSGGKA 339

Query: 239 AKNIIASGALDNDRTMKIW 257
             +   +  +D    M IW
Sbjct: 340 KCSQFCTTGMDG--GMSIW 356

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} Length = 371

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 48.3 bits (113), Expect = 4e-07
 Identities = 13/115 (11%), Positives = 30/115 (26%), Gaps = 37/115 (32%)

Query: 22  HLRAVSYVKFSHDGRLLTSSSAEKTLLTYSLSSISNFDSTPPSPLQKFTGHEQGISDLAT 81
            +  +S   ++ D   +                                           
Sbjct: 6   LVEPISCHAWNKDRTQIAICPNNHE----------------------------------- 30

Query: 82  IRLWDVPTATS--LKTLIGHTNYVFCINFNPQSNRIVSDTFNETIRIWDIKTGKC 134
           + +++        +  L  H   V  +++ P SNRIV+   +    +W +K    
Sbjct: 31  VHIYEKSGNKWVQVHELKEHNGQVTGVDWAPDSNRIVTCGTDRNAYVWTLKGRTW 85

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} Length = 371

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 46.8 bits (109), Expect = 1e-06
 Identities = 16/117 (13%), Positives = 31/117 (26%), Gaps = 44/117 (37%)

Query: 141 HSDPVTAIDFNRDGTMIVTSSYDGLYRILDASTPNGKFILVGTLDNTLRLWNYSTRKILK 200
             +P++   +N+D T I     +                        + ++  S  K ++
Sbjct: 6   LVEPISCHAWNKDRTQIAICPNNH----------------------EVHIYEKSGNKWVQ 43

Query: 201 TYSGYTNSKYCISSTFSVTNGKYIVSHRDPVISVASHPAKNIIASGALDNDRTMKIW 257
            +                     +  H   V  V   P  N I +     DR   +W
Sbjct: 44  VHE--------------------LKEHNGQVTGVDWAPDSNRIVTC--GTDRNAYVW 78

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} Length = 371

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 44.1 bits (102), Expect = 8e-06
 Identities = 13/102 (12%), Positives = 27/102 (26%), Gaps = 5/102 (4%)

Query: 81  TIRLWDVPTATSLKTLIGHTNYVFCINFNPQSNRIVSDTFNETIRIWDIKTGKCLKVLPA 140
              L+   +A    +  G  +     +    + R      ++              +   
Sbjct: 265 FPVLFTYDSAAGKLSFGGRLDVPKQSSQRGLTARERFQNLDKKASSEG-SAAAGAGLDSL 323

Query: 141 HSDPVTAIDFNRDG----TMIVTSSYDGLYRILDASTPNGKF 178
           H + V+ I     G    +   T+  DG   I D  +     
Sbjct: 324 HKNSVSQISVLSGGKAKCSQFCTTGMDGGMSIWDVRSLESAL 365

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} Length = 371

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 41.8 bits (96), Expect = 5e-05
 Identities = 16/116 (13%), Positives = 36/116 (31%), Gaps = 11/116 (9%)

Query: 28  YVKFSHDGRLLTSSSAEKTLLTYSLSSISNFDSTPPSPLQKFTGHEQGISDLATIRLWDV 87
            V F  +  L+ +      +L    S+           + K +   +G++     +  D 
Sbjct: 248 AVTFITESSLVAAGHDCFPVLFTYDSAAGKLSFGGRLDVPKQSSQ-RGLTARERFQNLDK 306

Query: 88  ------PTATSLKTLIGHTNYVFCINFNPQSN----RIVSDTFNETIRIWDIKTGK 133
                   A        H N V  I+          +  +   +  + IWD+++ +
Sbjct: 307 KASSEGSAAAGAGLDSLHKNSVSQISVLSGGKAKCSQFCTTGMDGGMSIWDVRSLE 362

>d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 393

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Antiviral protein Ski8 (Ski8p)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 64.1 bits (154), Expect = 2e-12
 Identities = 17/116 (14%), Positives = 43/116 (37%), Gaps = 9/116 (7%)

Query: 85  WDVPTATSLKTLIGHTNYVFCINFNPQSNRIVSDTFNETIRIWDIKTGKCLKVLPAHSDP 144
               ++ +      H+++V  ++FN     + S  ++  +R WD+KT + +  L  H D 
Sbjct: 274 VPTHSSQASLGEFAHSSWVMSLSFNDSGETLCSAGWDGKLRFWDVKTKERITTLNMHCDD 333

Query: 145 V----TAIDFNRDGTMIVTSSYDGLYRI-----LDASTPNGKFILVGTLDNTLRLW 191
           +      +  +  G  +       +  +             + +    LD ++R +
Sbjct: 334 IEIEEDILAVDEHGDSLAEPGVFDVKFLKKGWRSGMGADLNESLCCVCLDRSIRWF 389

>d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 393

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Antiviral protein Ski8 (Ski8p)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 52.5 bits (124), Expect = 1e-08
 Identities = 17/206 (8%), Positives = 51/206 (24%), Gaps = 38/206 (18%)

Query: 71  GHEQGISDLA-------------TIRLWDVPTA------TSLKTLIGHTNYVFCINF--- 108
            H+  I  ++              +++WD              +   H + +  ++    
Sbjct: 12  AHDADIFSVSACNSFTVSCSGDGYLKVWDNKLLDNENPKDKSYSHFVHKSGLHHVDVLQA 71

Query: 109 ----NPQSNRIVSDTFNETIRIWDIKTGKCLKVLPAHSDPVTAIDFNRDGTMIVTSSYDG 164
                 +   + + +F+  +  + I      K +      +   D  +     +      
Sbjct: 72  IERDAFELCLVATTSFSGDLLFYRITREDETKKVIFEKLDLLDSDMKKHSFWALKWGASN 131

Query: 165 LYRILDASTPNGKFILVGTLDNTLRLWNYSTRKILKTYSGYTNSKYCISSTFSVTNGKYI 224
                         ++   +  T  +W +              S          +     
Sbjct: 132 -------DRLLSHRLVATDVKGTTYIWKFHPFADESNSLTLNWSPTLELQGTVES----P 180

Query: 225 VSHRDPVISVASHPAKNIIASGALDN 250
           ++      SV     + +IA+G  + 
Sbjct: 181 MTPSQFATSVDISE-RGLIATGFNNG 205

>d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 393

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Antiviral protein Ski8 (Ski8p)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 51.4 bits (121), Expect = 4e-08
 Identities = 15/122 (12%), Positives = 36/122 (29%), Gaps = 14/122 (11%)

Query: 87  VPTATSLKTLIGHTNYVFCINFNPQSNRIVSDTFNETIRIWDIKTGKCLKVLPAHSDPVT 146
           + TA + K    H   +F ++     +  VS + +  +++WD K            D   
Sbjct: 4   IATANAGK---AHDADIFSVSACN--SFTVSCSGDGYLKVWDNKLLDNENPK----DKSY 54

Query: 147 AIDFNRDGTMIVTSSYDGLYRILDASTPNGKFILVGTLDNTLRLWNYSTRKILKTYSGYT 206
           +   ++ G   V        + ++        +   +    L  +  +     K      
Sbjct: 55  SHFVHKSGLHHVDV-----LQAIERDAFELCLVATTSFSGDLLFYRITREDETKKVIFEK 109

Query: 207 NS 208
             
Sbjct: 110 LD 111

>d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 393

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Antiviral protein Ski8 (Ski8p)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 42.1 bits (97), Expect = 4e-05
 Identities = 36/265 (13%), Positives = 85/265 (32%), Gaps = 29/265 (10%)

Query: 13  YTLTQTLNGHLRAVSYVKFSHDGRLLTSSSAEKTLLTYSLSSISNFDSTP----PSPLQK 68
             +   + G      +  F+ +   LT + +    L  ++ S             S    
Sbjct: 138 RLVATDVKGTTYIWKFHPFADESNSLTLNWSPTLELQGTVESPMTPSQFATSVDISERGL 197

Query: 69  F-TGHEQG-ISDLATIRLWDVPTATSLKTLIGHTNYVFCINFNPQSNRIVS---DTFNET 123
             TG   G +       L  +    S  ++I ++N +  + F+PQ + +           
Sbjct: 198 IATGFNNGTVQISELSTLRPLYNFESQHSMINNSNSIRSVKFSPQGSLLAIAHDSNSFGC 257

Query: 124 IRIWDIKTGKCLKVLPAHSDPVTAIDFNRDGTMIVTSSYDGLYRILDASTPNGKFILVGT 183
           I +++ + G+ +  L   +    A       +  V S          +   +G+ +    
Sbjct: 258 ITLYETEFGERIGSLSVPTHSSQASLGEFAHSSWVMS---------LSFNDSGETLCSAG 308

Query: 184 LDNTLRLWNYSTRKILKTYSGYTNSKYCISSTFSVT-NGKYIVS--------HRDPVISV 234
            D  LR W+  T++ + T + + +         +V  +G  +           +    S 
Sbjct: 309 WDGKLRFWDVKTKERITTLNMHCDDIEIEEDILAVDEHGDSLAEPGVFDVKFLKKGWRSG 368

Query: 235 ASHPAKNIIASGALDNDRTMKIWTQ 259
                   +    L  DR+++ + +
Sbjct: 369 MGADLNESLCCVCL--DRSIRWFRE 391

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 299

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 63.5 bits (152), Expect = 2e-12
 Identities = 18/77 (23%), Positives = 29/77 (37%), Gaps = 1/77 (1%)

Query: 93  LKTLIGHTNYVFCINFNPQSNRIVSDTFNETIRIWDIKTGKCLKVLP-AHSDPVTAIDFN 151
            +   GH   +  ++ +     + S      I  WDI TG   +V P  H+  +T I   
Sbjct: 5   DQVRYGHNKAITALSSSADGKTLFSADAEGHINSWDISTGISNRVFPDVHATMITGIKTT 64

Query: 152 RDGTMIVTSSYDGLYRI 168
             G +   S  D L  +
Sbjct: 65  SKGDLFTVSWDDHLKVV 81

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 299

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 51.9 bits (122), Expect = 2e-08
 Identities = 15/80 (18%), Positives = 30/80 (37%)

Query: 132 GKCLKVLPAHSDPVTAIDFNRDGTMIVTSSYDGLYRILDASTPNGKFILVGTLDNTLRLW 191
           G   +V   H+  +TA+  + DG  + ++  +G     D ST     +        +   
Sbjct: 2   GSIDQVRYGHNKAITALSSSADGKTLFSADAEGHINSWDISTGISNRVFPDVHATMITGI 61

Query: 192 NYSTRKILKTYSGYTNSKYC 211
             +++  L T S   + K  
Sbjct: 62  KTTSKGDLFTVSWDDHLKVV 81

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 299

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 49.6 bits (116), Expect = 1e-07
 Identities = 18/122 (14%), Positives = 39/122 (31%), Gaps = 37/122 (30%)

Query: 14  TLTQTLNGHLRAVSYVKFSHDGRLLTSSSAEKTLLTYSLSSISNFDSTPPSPLQKFTGHE 73
           ++ Q   GH +A++ +  S DG+ L S+ AE                             
Sbjct: 3   SIDQVRYGHNKAITALSSSADGKTLFSADAEG---------------------------- 34

Query: 74  QGISDLATIRLWDVPTATSLKTLI-GHTNYVFCINFNPQSNRIVSDTFNETIRIWDIKTG 132
                   I  WD+ T  S +     H   +  I    +   + + ++++ +++      
Sbjct: 35  -------HINSWDISTGISNRVFPDVHATMITGIKTTSK-GDLFTVSWDDHLKVVPAGGS 86

Query: 133 KC 134
             
Sbjct: 87  GV 88

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 299

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 46.9 bits (109), Expect = 8e-07
 Identities = 13/74 (17%), Positives = 35/74 (47%), Gaps = 2/74 (2%)

Query: 99  HTNYVFCINFNPQSNRIVSDTFNETIRIWDIKTGKCLKVL--PAHSDPVTAIDFNRDGTM 156
           HT  V C++++P + R+ + + + ++ +W++       ++   AH+          + T 
Sbjct: 223 HTAKVACVSWSPDNVRLATGSLDNSVIVWNMNKPSDHPIIIKGAHAMSSVNSVIWLNETT 282

Query: 157 IVTSSYDGLYRILD 170
           IV++  D   +  +
Sbjct: 283 IVSAGQDSNIKFWN 296

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 299

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 41.5 bits (95), Expect = 5e-05
 Identities = 8/51 (15%), Positives = 19/51 (37%), Gaps = 2/51 (3%)

Query: 81  TIRLWDVPTATSLKTLI--GHTNYVFCINFNPQSNRIVSDTFNETIRIWDI 129
           ++ +W++   +    +I   H               IVS   +  I+ W++
Sbjct: 247 SVIVWNMNKPSDHPIIIKGAHAMSSVNSVIWLNETTIVSAGQDSNIKFWNV 297

>d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} Length = 293

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD-repeat protein 1 (beta-TRCP1)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 60.6 bits (145), Expect = 2e-11
 Identities = 39/171 (22%), Positives = 61/171 (35%), Gaps = 40/171 (23%)

Query: 31  FSHDGRLLTSSSAEKTLLTYSLSSISNFDSTPPSPLQKFTGHEQGISDLATIRLWDVPTA 90
            S D  +   +++    +                     +G         TIRLWD+   
Sbjct: 154 ASGDRTIKVWNTSTCEFVRTLNGHKRGIACLQYRDRLVVSGSSDN-----TIRLWDIECG 208

Query: 91  TSLKTLIGHTNYVFCINFNPQSNRIVSDTFNETIRIWDIKTG---------KCLKVLPAH 141
             L+ L GH   V CI F+ +  RIVS  ++  I++WD+             CL+ L  H
Sbjct: 209 ACLRVLEGHEELVRCIRFDNK--RIVSGAYDGKIKVWDLVAALDPRAPAGTLCLRTLVEH 266

Query: 142 SDPVTAIDFNRDGTMIVTSSYDGLYRILDASTPNGKFILVGTLDNTLRLWN 192
           S  V  + F  D   IV+SS+D                       T+ +W+
Sbjct: 267 SGRVFRLQF--DEFQIVSSSHDD----------------------TILIWD 293

>d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} Length = 293

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD-repeat protein 1 (beta-TRCP1)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 57.6 bits (137), Expect = 2e-10
 Identities = 46/291 (15%), Positives = 86/291 (29%), Gaps = 105/291 (36%)

Query: 66  LQKFTGHEQGISDLA-------------TIRLWDVPTATSLKTLIGHTNYVFCINFNPQS 112
           +   +   +G+  L              TI++WD  T    + L GHT  V C+ ++ + 
Sbjct: 8   IHCRSETSKGVYCLQYDDQKIVSGLRDNTIKIWDKNTLECKRILTGHTGSVLCLQYDERV 67

Query: 113 NRIVSDTFNE--------------------------------------TIRIWDIKTGKC 134
               S                                           +I +WD+ +   
Sbjct: 68  IITGSSDSTVRVWDVNTGEMLNTLIHHCEAVLHLRFNNGMMVTCSKDRSIAVWDMASPTD 127

Query: 135 L---KVLPAHSDPVTAIDFNRDGTMIVTSSYDGLYRILDAST------------------ 173
           +   +VL  H   V  +DF+    +  ++S D   ++ + ST                  
Sbjct: 128 ITLRRVLVGHRAAVNVVDFDDKYIV--SASGDRTIKVWNTSTCEFVRTLNGHKRGIACLQ 185

Query: 174 PNGKFILVGTLDNTLRLWNYSTRKILKTYSGYTNSKYC---------------------- 211
              + ++ G+ DNT+RLW+      L+   G+     C                      
Sbjct: 186 YRDRLVVSGSSDNTIRLWDIECGACLRVLEGHEELVRCIRFDNKRIVSGAYDGKIKVWDL 245

Query: 212 -----ISSTFSVTNGKYIVSHRDPVISVASHPAKNIIASGALDNDRTMKIW 257
                  +       + +V H   V  +        I S +  +D T+ IW
Sbjct: 246 VAALDPRAPAGTLCLRTLVEHSGRVFRLQFDE--FQIVSSS--HDDTILIW 292

>d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} Length = 293

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD-repeat protein 1 (beta-TRCP1)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 42.1 bits (97), Expect = 3e-05
 Identities = 13/79 (16%), Positives = 27/79 (34%), Gaps = 24/79 (30%)

Query: 133 KCLKVLPAHSDPVTAIDFNRDGTMIVTSSYDGLYRILDASTPNGKFILVGTLDNTLRLWN 192
           + +      S  V  + +  D   IV+   D                       T+++W+
Sbjct: 6   QRIHCRSETSKGVYCLQY--DDQKIVSGLRDN----------------------TIKIWD 41

Query: 193 YSTRKILKTYSGYTNSKYC 211
            +T +  +  +G+T S  C
Sbjct: 42  KNTLECKRILTGHTGSVLC 60

>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: Cell cycle arrest protein BUB3
domain: Cell cycle arrest protein BUB3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 59.5 bits (142), Expect = 6e-11
 Identities = 11/89 (12%), Positives = 31/89 (34%), Gaps = 1/89 (1%)

Query: 83  RLWDVPTATSLKTLIGHTNYVFCINFNPQSNRIVSDTFNETIRIWDIKTGKCLKVLPAHS 142
           + +                 V  I F+P+   + +   +  I  W+++T K +K      
Sbjct: 234 KRFAFRCHRLNLKDTNLAYPVNSIEFSPRHKFLYTAGSDGIISCWNLQTRKKIKNFAKF- 292

Query: 143 DPVTAIDFNRDGTMIVTSSYDGLYRILDA 171
           +  + +       ++  ++ D  ++   A
Sbjct: 293 NEDSVVKIACSDNILCLATSDDTFKTNAA 321

>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: Cell cycle arrest protein BUB3
domain: Cell cycle arrest protein BUB3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 56.8 bits (135), Expect = 5e-10
 Identities = 6/69 (8%), Positives = 26/69 (37%), Gaps = 3/69 (4%)

Query: 93  LKTLIGHTNYVFCINFNPQSNRIVSDTFNETIRIWDIKTGKC---LKVLPAHSDPVTAID 149
           ++      +Y+  I   P  + ++  +++ ++ ++          L     +  P+   +
Sbjct: 4   VQIEQAPKDYISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCCN 63

Query: 150 FNRDGTMIV 158
           F  +  + +
Sbjct: 64  FIDNTDLQI 72

>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: Cell cycle arrest protein BUB3
domain: Cell cycle arrest protein BUB3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 51.0 bits (120), Expect = 4e-08
 Identities = 8/55 (14%), Positives = 23/55 (41%)

Query: 133 KCLKVLPAHSDPVTAIDFNRDGTMIVTSSYDGLYRILDASTPNGKFILVGTLDNT 187
           + +++  A  D ++ I      ++++ +S+DG   +           L+ +L   
Sbjct: 2   QIVQIEQAPKDYISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYK 56

>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: Cell cycle arrest protein BUB3
domain: Cell cycle arrest protein BUB3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 46.0 bits (107), Expect = 2e-06
 Identities = 10/103 (9%), Positives = 25/103 (24%), Gaps = 38/103 (36%)

Query: 17  QTLNGHLRAVSYVKFSHDGRLLTSSSAEKTLLTYSLSSISNFDSTPPSPLQKFTGHEQGI 76
           Q        +S +K      LL  +S + +                              
Sbjct: 5   QIEQAPKDYISDIKIIPSKSLLLITSWDGS------------------------------ 34

Query: 77  SDLATIRLWDVPTAT---SLKTLIGHTNYVFCINFNPQSNRIV 116
                + ++          L   + + + + C NF   ++  +
Sbjct: 35  -----LTVYKFDIQAKNVDLLQSLRYKHPLLCCNFIDNTDLQI 72

>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: Cell cycle arrest protein BUB3
domain: Cell cycle arrest protein BUB3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 44.8 bits (104), Expect = 5e-06
 Identities = 15/146 (10%), Positives = 35/146 (23%), Gaps = 27/146 (18%)

Query: 26  VSYVKFSHDGRLLTSSSAEKTLLTYSL-------SSISNFDSTPPSPLQKFTGHEQGISD 78
                   +      SS +  +            +S   F         K T     ++ 
Sbjct: 197 RDVALLPKEQEGYACSSIDGRVAVEFFDDQGDDYNSSKRFAFRCHRLNLKDTNLAYPVNS 256

Query: 79  LA---------------TIRLWDVPTATSLKTLIGHTNYVFCINFNPQSNRIVSDTFNET 123
           +                 I  W++ T   +K      N    +      N +   T ++T
Sbjct: 257 IEFSPRHKFLYTAGSDGIISCWNLQTRKKIKNFAKF-NEDSVVKIACSDNILCLATSDDT 315

Query: 124 IRIWDIKTGKCLKVLPAHSDPVTAID 149
            +          + +  ++  +  I 
Sbjct: 316 FKTN----AAIDQTIELNASSIYIIF 337

>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: Cell cycle arrest protein BUB3
domain: Cell cycle arrest protein BUB3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 40.6 bits (93), Expect = 1e-04
 Identities = 20/180 (11%), Positives = 45/180 (25%), Gaps = 36/180 (20%)

Query: 82  IRLWDVPTATSLKTLIGHTNY----VFCINFNPQSNRIVSDTFNETIRIWDIKTGKCLKV 137
           ++ + +P        I  +              +       + +  + +           
Sbjct: 172 VQWFRLPLCEDDNGTIEESGLKYQIRDVALLPKEQEGYACSSIDGRVAVEFFDDQGDDYN 231

Query: 138 LPAHSDPVTAIDFNRDGTMIVTSSYDGLYRILDASTPNGKFILVGTLDNTLRLWNYSTRK 197
                       F      +  ++       ++ S P  KF+     D  +  WN  TRK
Sbjct: 232 S------SKRFAFRCHRLNLKDTNLAYPVNSIEFS-PRHKFLYTAGSDGIISCWNLQTRK 284

Query: 198 ILKTYSGYTNSKYCISSTFSVTNGKYIVSHRDPVISVASHPAKNIIASGALDNDRTMKIW 257
            +K ++ +                       +    V    + NI+      +D T K  
Sbjct: 285 KIKNFAKF-----------------------NEDSVVKIACSDNILCLAT--SDDTFKTN 319

>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 311

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 59.1 bits (141), Expect = 7e-11
 Identities = 17/73 (23%), Positives = 36/73 (49%), Gaps = 1/73 (1%)

Query: 99  HTNYVFCINFNPQSNRIVSDTFNETIRIWDIKTGKCLKVLPAHSD-PVTAIDFNRDGTMI 157
           H+  VF + ++P   +I S + ++TI+IW++ T K  K +P  +      +        +
Sbjct: 237 HSGSVFGLTWSPDGTKIASASADKTIKIWNVATLKVEKTIPVGTRIEDQQLGIIWTKQAL 296

Query: 158 VTSSYDGLYRILD 170
           V+ S +G    ++
Sbjct: 297 VSISANGFINFVN 309

>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 311

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 56.8 bits (135), Expect = 4e-10
 Identities = 9/68 (13%), Positives = 20/68 (29%), Gaps = 1/68 (1%)

Query: 101 NYVFCINFNPQSNRIVSDTFNETIRIWDIKTGKCLKVLPAHSDPVTAIDFNRDGTMIVTS 160
                +   P  ++I       ++    + +    ++   HS   T    +  G    + 
Sbjct: 18  GTAVVLGNTPAGDKIQYCN-GTSVYTVPVGSLTDTEIYTEHSHQTTVAKTSPSGYYCASG 76

Query: 161 SYDGLYRI 168
              G  RI
Sbjct: 77  DVHGNVRI 84

>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 311

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 50.7 bits (119), Expect = 5e-08
 Identities = 36/286 (12%), Positives = 73/286 (25%), Gaps = 62/286 (21%)

Query: 14  TLTQTLNGHLRAVSYVKFSHDGRLLTSSSAEKTLLTYSLSS------------ISNFDST 61
           T T+    H    +  K S  G    S      +  +  +                    
Sbjct: 49  TDTEIYTEHSHQTTVAKTSPSGYYCASGDVHGNVRIWDTTQTTHILKTTIPVFSGPVKDI 108

Query: 62  PPSPLQKFTGHEQGISDLATIRLWDVPTATSLKTLIGHTNYVFCINFNPQSNRIVSDTFN 121
                 K         +            ++                  +  RI+S + +
Sbjct: 109 SWDSESKRIAAVGEGRERFGHVFLFDTGTSNGNLTGQARAMNSVDFKPSRPFRIISGSDD 168

Query: 122 ETIRIWDIKTGKCLKVLPAHSDPVTAIDFNRDGTMIVTSSYDGLYRILDAST-------- 173
            T+ I++    K       H+  V ++ +N DG++  ++  DG   + +           
Sbjct: 169 NTVAIFEGPPFKFKSTFGEHTKFVHSVRYNPDGSLFASTGGDGTIVLYNGVDGTKTGVFE 228

Query: 174 -------------------PNGKFILVGTLDNTLRLWNYSTRKILKTYSGYTNSKYCISS 214
                              P+G  I   + D T+++WN +T K+ KT             
Sbjct: 229 DDSLKNVAHSGSVFGLTWSPDGTKIASASADKTIKIWNVATLKVEKTIPV---------- 278

Query: 215 TFSVTNGKYIVSHRDPVISVASHPAKNIIASGALDNDRTMKIWTQE 260
                        R     +     K  + S + +    +     E
Sbjct: 279 -----------GTRIEDQQLGIIWTKQALVSISANG--FINFVNPE 311

>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 311

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 43.4 bits (100), Expect = 1e-05
 Identities = 9/54 (16%), Positives = 18/54 (33%)

Query: 81  TIRLWDVPTATSLKTLIGHTNYVFCINFNPQSNRIVSDTFNETIRIWDIKTGKC 134
           ++    V + T  +    H++       +P      S   +  +RIWD      
Sbjct: 39  SVYTVPVGSLTDTEIYTEHSHQTTVAKTSPSGYYCASGDVHGNVRIWDTTQTTH 92

>d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} Length = 360

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Tricorn protease domain 2
family: Tricorn protease domain 2
domain: Tricorn protease domain 2
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

 Score = 57.6 bits (137), Expect = 3e-10
 Identities = 14/155 (9%), Positives = 37/155 (23%), Gaps = 5/155 (3%)

Query: 21  GHLRAVSYVKFSHDGRLLTSSSAEKTLLTYSLSSISNFDSTP-PSPLQKFTGHEQGISDL 79
              R++                ++  ++     S +     P     +        +   
Sbjct: 196 LSYRSLDPSPDRVVLNFSFEVVSKPFVIPLIPGSPNPTKLVPRSMTSEAGEYDLNDMYKR 255

Query: 80  ATIRLWDVPTATSLKTLIGHTNYVFCINFNPQSNRIVSDTFNETIRIWDIKTGKCLKVLP 139
           ++    D      +  L               +           +  +D+KT K    + 
Sbjct: 256 SSPINVDPGDYRMIIPLESSILIYSVPVHGEFAAYYQGAPEKGVLLKYDVKTRK----VT 311

Query: 140 AHSDPVTAIDFNRDGTMIVTSSYDGLYRILDASTP 174
              + +T +  + D   ++    DG         P
Sbjct: 312 EVKNNLTDLRLSADRKTVMVRKDDGKIYTFPLEKP 346

>d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} Length = 360

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Tricorn protease domain 2
family: Tricorn protease domain 2
domain: Tricorn protease domain 2
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

 Score = 50.2 bits (118), Expect = 7e-08
 Identities = 13/152 (8%), Positives = 39/152 (25%), Gaps = 20/152 (13%)

Query: 9   SFRPYTLTQTLNGHLRAVSYVKFSHDGRLLTSSSAEKTLLTYSLSSISNFDSTPPSPLQK 68
           SF   +    +     + +  K         +   +   +    SS  N D      +  
Sbjct: 213 SFEVVSKPFVIPLIPGSPNPTKLVPRSMTSEAGEYDLNDMYKR-SSPINVDPGDYRMIIP 271

Query: 69  FTGHEQGI---------------SDLATIRLWDVPTATSLKTLIGHTNYVFCINFNPQSN 113
                                   +   +  +DV T    + +    N +  +  +    
Sbjct: 272 LESSILIYSVPVHGEFAAYYQGAPEKGVLLKYDVKT----RKVTEVKNNLTDLRLSADRK 327

Query: 114 RIVSDTFNETIRIWDIKTGKCLKVLPAHSDPV 145
            ++    +  I  + ++  +  + +     P+
Sbjct: 328 TVMVRKDDGKIYTFPLEKPEDERTVETDKRPL 359

>d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} Length = 360

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Tricorn protease domain 2
family: Tricorn protease domain 2
domain: Tricorn protease domain 2
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

 Score = 45.6 bits (106), Expect = 2e-06
 Identities = 17/175 (9%), Positives = 48/175 (27%), Gaps = 14/175 (8%)

Query: 97  IGHTNYVFCINFNPQSNRIVSDTFNETIRIWDIKTGKC-------LKVLPAHSDPVTAID 149
               ++ +   F+  S  +   ++       D               V+P          
Sbjct: 175 TTENSHDYAPAFDADSKNLYYLSYRSLDPSPDRVVLNFSFEVVSKPFVIPLIPGSPNPTK 234

Query: 150 FNRDGTMIVTSSY---DGLYRILDASTPNGKFILVGTLDNTLRLWNYSTRKILKTYSGYT 206
                       Y   D   R    +   G + ++  L++++ +++         Y    
Sbjct: 235 LVPRSMTSEAGEYDLNDMYKRSSPINVDPGDYRMIIPLESSILIYSVPVHGEFAAYYQGA 294

Query: 207 NSKYCISSTFSVTNGKYIVSHRDPVISVASHPAKNIIASGALDNDRTMKIWTQEK 261
             K  +   + V   K +   ++ +  +     +  +      +D  +  +  EK
Sbjct: 295 PEKGVLLK-YDVKTRK-VTEVKNNLTDLRLSADRKTVMVRK--DDGKIYTFPLEK 345

>d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} Length = 360

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Tricorn protease domain 2
family: Tricorn protease domain 2
domain: Tricorn protease domain 2
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

 Score = 40.2 bits (92), Expect = 1e-04
 Identities = 10/105 (9%), Positives = 22/105 (20%), Gaps = 2/105 (1%)

Query: 107 NFNPQSNRIVSDTFNETIRIWDIKTGKCLKVLPAHSDPVTAIDFNRDGTMIVTSSYDGLY 166
           +F+P    +++        I D+     LKV       +  +    D  +          
Sbjct: 9   DFSPLDGDLIAFVSRGQAFIQDVSGTYVLKV--PEPLRIRYVRRGGDTKVAFIHGTREGD 66

Query: 167 RILDASTPNGKFILVGTLDNTLRLWNYSTRKILKTYSGYTNSKYC 211
            +       GK          +              +        
Sbjct: 67  FLGIYDYRTGKAEKFEENLGNVFAMGVDRNGKFAVVANDRFEIMT 111

>d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} Length = 360

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Tricorn protease domain 2
family: Tricorn protease domain 2
domain: Tricorn protease domain 2
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

 Score = 37.9 bits (86), Expect = 0.001
 Identities = 18/186 (9%), Positives = 44/186 (23%), Gaps = 14/186 (7%)

Query: 81  TIRLWDVPTATSLKTLIGHTNYVFCINFNPQSNRIV--SDTFNETIRIWDIKTGKCLKVL 138
              + DV     LK  +     +  +     +           + + I+D +TGK  +  
Sbjct: 25  QAFIQDVSGTYVLK--VPEPLRIRYVRRGGDTKVAFIHGTREGDFLGIYDYRTGK-AEKF 81

Query: 139 PAHSDPVTAIDFNRDGTMIVTSSYDGLYRILDASTPNGKFILVGTLDNTLRLWNYSTRKI 198
             +   V A+  +R+G   V ++       +D  T     I                 + 
Sbjct: 82  EENLGNVFAMGVDRNGKFAVVANDRFEIMTVDLETGKPTVIERSREAMITDFTISDNSRF 141

Query: 199 LKTYSGYTNSKYCISSTFS-------VTNGKYIVSHRDPVISVASHPAKNIIASGALDND 251
           +       + +       +               +      + A       +   +    
Sbjct: 142 IAYGFPLKHGETDGYVMQAIHVYDMEGRKIFAATTENSHDYAPAFDADSKNLYYLS--YR 199

Query: 252 RTMKIW 257
                 
Sbjct: 200 SLDPSP 205

>d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} Length = 360

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Tricorn protease domain 2
family: Tricorn protease domain 2
domain: Tricorn protease domain 2
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

 Score = 36.8 bits (83), Expect = 0.002
 Identities = 21/243 (8%), Positives = 52/243 (21%), Gaps = 28/243 (11%)

Query: 21  GHLRAVSYVKFSHDGRLLTSSSAE--KTLLTYSLSSISNFDSTPPSPLQKFTGHEQGISD 78
                + YV+   D ++           L  Y   +            +KF  +   +  
Sbjct: 40  PEPLRIRYVRRGGDTKVAFIHGTREGDFLGIYDYRT---------GKAEKFEENLGNVFA 90

Query: 79  LATIRLW--DVPTATSLKTLIGHTNYVFCINFNPQSNRIVSDTFNETIRIWDIKTGKCLK 136
           +   R     V      + +                  +++D        +         
Sbjct: 91  MGVDRNGKFAVVANDRFEIMTVDLETGKPTVIERSREAMITDFTISDNSRFIAYGFPLKH 150

Query: 137 VLPAHSDPVTAIDFNRDGTMIVTSSYDGLYRILDASTPNGKFILVGTLDNTLRLWNYSTR 196
                        ++ +G  I  ++ +  +    A   + K +   +  +     +    
Sbjct: 151 GETDGYVMQAIHVYDMEGRKIFAATTENSHDYAPAFDADSKNLYYLSYRSLDPSPDRVVL 210

Query: 197 KILKTYSGYTNSKYCISSTFSVTNGKYIVSHRDPVISVASHPAKNIIASGALDNDRTMKI 256
                            S   V+    I             P      +G  D +   K 
Sbjct: 211 NF---------------SFEVVSKPFVIPLIPGSPNPTKLVPRSMTSEAGEYDLNDMYKR 255

Query: 257 WTQ 259
            + 
Sbjct: 256 SSP 258

>d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 287

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 55.0 bits (130), Expect = 2e-09
 Identities = 14/73 (19%), Positives = 29/73 (39%), Gaps = 2/73 (2%)

Query: 99  HTNYVFCINFNPQSNRIVSDTFNETIRIWDIKT-GKCLKVLPAHSDPVTAIDFNRDGTMI 157
                       + + + + + +  I I+ +K   K +K L AH D V  + +    T +
Sbjct: 214 KPAEKGANEEEIEEDLVATGSLDTNIFIYSVKRPMKIIKALNAHKDGVNNLLWETPST-L 272

Query: 158 VTSSYDGLYRILD 170
           V+S  D   +  +
Sbjct: 273 VSSGADACIKRWN 285

>d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 287

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 50.3 bits (118), Expect = 6e-08
 Identities = 13/65 (20%), Positives = 28/65 (43%), Gaps = 9/65 (13%)

Query: 93  LKTLIGHTNYVFCINFNPQSNRIVSDTFNETIRIWDIKTGKCLKVLPAHSDPVTAIDFNR 152
           LKT+ GH   +  +  NP    ++S +++  I  W   +         HS+ + ++D ++
Sbjct: 6   LKTISGHNKGITALTVNP----LISGSYDGRIMEWSSSSMHQ-----DHSNLIVSLDNSK 56

Query: 153 DGTMI 157
                
Sbjct: 57  AQEYS 61

>d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 287

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 47.3 bits (110), Expect = 5e-07
 Identities = 11/54 (20%), Positives = 23/54 (42%), Gaps = 2/54 (3%)

Query: 77  SDLATIRLWDVPTATS-LKTLIGHTNYVFCINFNPQSNRIVSDTFNETIRIWDI 129
           S    I ++ V      +K L  H + V  + +    + +VS   +  I+ W++
Sbjct: 234 SLDTNIFIYSVKRPMKIIKALNAHKDGVNNLLWET-PSTLVSSGADACIKRWNV 286

>d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 287

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 40.7 bits (93), Expect = 8e-05
 Identities = 11/43 (25%), Positives = 21/43 (48%), Gaps = 4/43 (9%)

Query: 131 TGKCLKVLPAHSDPVTAIDFNRDGTMIVTSSYDGLYRILDAST 173
             + LK +  H+  +TA+  N     +++ SYDG      +S+
Sbjct: 2   HDEVLKTISGHNKGITALTVNP----LISGSYDGRIMEWSSSS 40

>d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 287

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 37.6 bits (85), Expect = 8e-04
 Identities = 27/267 (10%), Positives = 65/267 (24%), Gaps = 19/267 (7%)

Query: 2   SSDRSLESFRPYTLTQTLNGHLRAVSYVKFSHDGRLLTSSSAEKTLLTYSLSSISNFDST 61
           S D  +     ++ +     H   +  +  S      + S  +            +   +
Sbjct: 28  SYDGRI---MEWSSSSMHQDHSNLIVSLDNSKAQEYSSISWDDTL---KVNGITKHEFGS 81

Query: 62  PPSPLQKFTGHEQGISDLATIRLWDVPTATSLKTLIGHTNYVFCINFNPQSNRIVSDTFN 121
            P            +       L        +   +   +    ++ +     +  +  N
Sbjct: 82  QPKVASANNDGFTAVLTNDDDLLILQSFTGDIIKSVRLNSPGSAVSLSQNYVAVGLEEGN 141

Query: 122 ETIRIWDIKTGKCLKVLPAHSDPVTAIDFNRDGTMIVTSSYDGLYRILDASTPNGKFILV 181
                          +        + I  +   T I      G   + D  +   K    
Sbjct: 142 TIQVFKLSDLEVSFDLKTPLRAKPSYISISPSETYIAAGDVMGKILLYDLQSREVKTSRW 201

Query: 182 GTLDNTLRLWNYSTRKILKTYSGYTNSKYCISST------FSVTNGKYIVS----HRDPV 231
               + +   ++   +                S       +SV     I+     H+D V
Sbjct: 202 AFRTSKINAISWKPAEKGANEEEIEEDLVATGSLDTNIFIYSVKRPMKIIKALNAHKDGV 261

Query: 232 ISVASHPAKNIIASGALDNDRTMKIWT 258
            ++       +++SGA   D  +K W 
Sbjct: 262 NNLLWETPSTLVSSGA---DACIKRWN 285

>d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 325

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 53.8 bits (127), Expect = 5e-09
 Identities = 35/259 (13%), Positives = 67/259 (25%), Gaps = 48/259 (18%)

Query: 16  TQTLNGHL-RAVSYVKFS--HDGRLLTSSSAEKTLLTYSLSSISNFDSTPPSPLQKFTGH 72
                GH    V+ VKFS     + L S      ++ +  +     +S   +   +F   
Sbjct: 55  VVQFTGHGSSVVTTVKFSPIKGSQYLCSGDESGKVIVWGWTFDKESNSVEVNVKSEFQVL 114

Query: 73  EQGISDLA-----------------TIRLWDVPTATSLKTLIGHTNYVFCINFNPQSNRI 115
              ISD++                         +  SL  + GH+  +   +        
Sbjct: 115 AGPISDISWDFEGRRLCVVGEGRDNFGVFISWDSGNSLGEVSGHSQRINACHLKQSRPMR 174

Query: 116 VS----DTFNETIRIWDIKTGKCLKVLPAHSDPVTAIDFNRD------------------ 153
                 D      +    K     +        V  ++F+ D                  
Sbjct: 175 SMTVGDDGSVVFYQGPPFKFSASDRTHHKQGSFVRDVEFSPDSGEFVITVGSDRKISCFD 234

Query: 154 ------GTMIVTSSYDGLYRILDASTPNGKFILVGTLDNTLRLWNYSTRKILKTYSGYTN 207
                    I          I   S  + +       D T+R+W+ +T K ++ ++    
Sbjct: 235 GKSGEFLKYIEDDQEPVQGGIFALSWLDSQKFATVGADATIRVWDVTTSKCVQKWTLDKQ 294

Query: 208 SKYCISSTFSVTNGKYIVS 226
                      T    I+S
Sbjct: 295 QLGNQQVGVVATGNGRIIS 313

>d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 325

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 48.4 bits (113), Expect = 3e-07
 Identities = 13/75 (17%), Positives = 24/75 (32%), Gaps = 3/75 (4%)

Query: 99  HTNYVFCINFNPQSNRIVSDTFNETIRIWDIKTGKCLKVLPAHSDPVTAIDFN---RDGT 155
                        S +  +   + TIR+WD+ T KC++        +             
Sbjct: 250 PVQGGIFALSWLDSQKFATVGADATIRVWDVTTSKCVQKWTLDKQQLGNQQVGVVATGNG 309

Query: 156 MIVTSSYDGLYRILD 170
            I++ S DG     +
Sbjct: 310 RIISLSLDGTLNFYE 324

>d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 325

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 43.0 bits (99), Expect = 2e-05
 Identities = 11/52 (21%), Positives = 24/52 (46%), Gaps = 3/52 (5%)

Query: 81  TIRLWDVPTATSLKTLIGHTNYVFCINFN---PQSNRIVSDTFNETIRIWDI 129
           TIR+WDV T+  ++        +           + RI+S + + T+  +++
Sbjct: 274 TIRVWDVTTSKCVQKWTLDKQQLGNQQVGVVATGNGRIISLSLDGTLNFYEL 325

>d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 325

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 38.4 bits (87), Expect = 6e-04
 Identities = 22/177 (12%), Positives = 49/177 (27%), Gaps = 43/177 (24%)

Query: 92  SLKTLI-----GHTNYVFCINFNPQSNRIVSDTFNET-IRIWDIKTGKCLKVLP---AHS 142
           SLK +I        N+   ++++P +N I         +R  D    K   V+      S
Sbjct: 4   SLKEIIPPQPSTQRNFTTHLSYDPTTNAIAYPCGKSAFVRCLDDGDSKVPPVVQFTGHGS 63

Query: 143 DPVTAIDFNRDGTMIVTSSYDGLYRILDASTPNGKFILVGTLDNTLRLWNYSTRKILKTY 202
             VT + F+                         +++  G     + +W ++  K   + 
Sbjct: 64  SVVTTVKFSPIK--------------------GSQYLCSGDESGKVIVWGWTFDKESNSV 103

Query: 203 SGYTNSKYCISSTFSVTNGKYIVSHRDPVISVASHPAKNIIASGALDNDRTMKIWTQ 259
                S++ +                 P+  ++       +       D      + 
Sbjct: 104 EVNVKSEFQV--------------LAGPISDISWDFEGRRLCVVGEGRDNFGVFISW 146

>d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]} Length = 346

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Pseudomonas putida [TaxId: 303]

 Score = 53.2 bits (126), Expect = 8e-09
 Identities = 19/126 (15%), Positives = 35/126 (27%), Gaps = 25/126 (19%)

Query: 77  SDLATIRLWDVPTATSLKTLIG-HTNYVFCINFNPQSNRIVSDTFNETIRIWDIKTGKCL 135
             L      D+ T  +        T   F    +P+    +    N  +  +D+K  K +
Sbjct: 227 DLLYGYLSVDLKTGKTHTQEFADLTELYFTGLRSPKDPNQIYGVLN-RLAKYDLKQRKLI 285

Query: 136 KVLPAHSDPVTAIDFNRDGTMIVTSSYDGLYRILDASTPNGKFILVGTLDNTLRLWNYST 195
           K           + F                         G  + +G   N L ++N  T
Sbjct: 286 KAAN-LDHTYYCVAF----------------------DKKGDKLYLGGTFNDLAVFNPDT 322

Query: 196 RKILKT 201
            + +K 
Sbjct: 323 LEKVKN 328

>d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]} Length = 346

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Pseudomonas putida [TaxId: 303]

 Score = 49.4 bits (116), Expect = 1e-07
 Identities = 16/143 (11%), Positives = 47/143 (32%), Gaps = 11/143 (7%)

Query: 20  NGHLRAVSYVKFSHDGRLLTSSSAEKTLLTYSLSS-------ISNFDSTPPSPLQKFTGH 72
           +      +  +F  D +   ++      L+  L +        ++      + L+     
Sbjct: 205 HEFSMLYTIARFKDDKQDPATADLLYGYLSVDLKTGKTHTQEFADLTELYFTGLRSPKDP 264

Query: 73  EQGISDLATIRLWDVPTATSLKTLIGHTNYVFCINFNPQSNRIVSDTFNETIRIWDIKTG 132
            Q    L  +  +D+     +K      +  +C+ F+ + +++        + +++  T 
Sbjct: 265 NQIYGVLNRLAKYDLKQRKLIKA-ANLDHTYYCVAFDKKGDKLYLGGTFNDLAVFNPDTL 323

Query: 133 KCLKVLPAHSDP---VTAIDFNR 152
           + +K +          T   F R
Sbjct: 324 EKVKNIKLPGGDMSTTTPQVFIR 346

>d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]} Length = 346

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Pseudomonas putida [TaxId: 303]

 Score = 40.9 bits (94), Expect = 8e-05
 Identities = 14/193 (7%), Positives = 40/193 (20%), Gaps = 40/193 (20%)

Query: 108 FNPQSNRIVSDTFNETIRIWDIKTGKCLKVLP-AHSDPVTAIDFNRDGTMI-VTSSYDGL 165
                  ++   +   + + D+ +    K                 D     V +++ G 
Sbjct: 4   LKAGHEYMIVTNYPNNLHVVDVASDTVYKSCVMPDKFGPGTAMMAPDNRTAYVLNNHYGD 63

Query: 166 YRILD--------------------------ASTPNGKFILVGTLD------------NT 187
              +D                          A +P+GK +                    
Sbjct: 64  IYGIDLDTCKNTFHANLSSVPGEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVKPPR 123

Query: 188 LRLWNYSTRKILKTYSGYTNSKYCISSTFSVTNGKYIVSHRDPVISVASHPAKNIIASGA 247
           L +++ +     K    +   +       +     Y+       + V +      +    
Sbjct: 124 LEVFSTADGLEAKPVRTFPMPRQVYLMRAADDGSLYVAGPDIYKMDVKTGKYTVALPLRN 183

Query: 248 LDNDRTMKIWTQE 260
            +           
Sbjct: 184 WNRKGYSAPDVLY 196

>d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]} Length = 346

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Pseudomonas putida [TaxId: 303]

 Score = 39.0 bits (89), Expect = 4e-04
 Identities = 28/293 (9%), Positives = 62/293 (21%), Gaps = 52/293 (17%)

Query: 14  TLTQTLN-GHLRAVSYVKFSHDGR-LLTSSSAEKTLLTYSLSSISNFDSTPPSPLQKFTG 71
           T+ ++              + D R     ++    +    L +  N      S +    G
Sbjct: 29  TVYKSCVMPDKFGPGTAMMAPDNRTAYVLNNHYGDIYGIDLDTCKNTFHANLSSVPGEVG 88

Query: 72  H-------------------------EQGISDLATIRLWDVPTATSLKTLIGHTNYVFCI 106
                                     +  +     + ++        K +         +
Sbjct: 89  RSMYSFAISPDGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEAKPVRTFPMPR-QV 147

Query: 107 NFNPQSNRIVSDTFNETIRIWDIKTGKCLKVLPAHSDPVTAIDFNRDGTMIVTSSYDGLY 166
                ++          I   D+KTGK    LP  +                  S    +
Sbjct: 148 YLMRAADDGSLYVAGPDIYKMDVKTGKYTVALPLRNWNRKGYSAPDVLYFWPHQSPRHEF 207

Query: 167 RILD---ASTPNGKFILVGTLDNTLRLWNYSTRKILKTYSGYTNSKYCIS---------- 213
            +L        + +      L       +  T K            Y             
Sbjct: 208 SMLYTIARFKDDKQDPATADLLYGYLSVDLKTGKTHTQEFADLTELYFTGLRSPKDPNQI 267

Query: 214 -------STFSVTNGKYI--VSHRDPVISVASHPAKNIIASGALDNDRTMKIW 257
                  + + +   K I   +       VA     + +  G   N   + ++
Sbjct: 268 YGVLNRLAKYDLKQRKLIKAANLDHTYYCVAFDKKGDKLYLGGTFN--DLAVF 318

>d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]} Length = 337

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Paracoccus denitrificans [TaxId: 266]

 Score = 52.9 bits (125), Expect = 9e-09
 Identities = 16/140 (11%), Positives = 39/140 (27%), Gaps = 26/140 (18%)

Query: 76  ISDLATIRLWDVPTATSLKT-LIGHTNYVFCINFNPQSNRIVSDTFNETIRIWDIKTGKC 134
            +    +   D+ T       +     + F    NP   R         +  +D++    
Sbjct: 215 TAYRTGLLTMDLETGEMAMREVRIMDVFYFSTAVNPAKTRAF--GAYNVLESFDLEKNAS 272

Query: 135 LKVLPAHSDPVTAIDFNRDGTMIVTSSYDGLYRILDASTPNGKFILVGTLDNTLRLWNYS 194
           +K +P       +++ + DG+ +      G                       L  ++  
Sbjct: 273 IKRVP-LPHSYYSVNVSTDGSTVWLGGALG----------------------DLAAYDAE 309

Query: 195 TRKILKTYSGYTNSKYCISS 214
           T +         N+   ++S
Sbjct: 310 TLEKKGQVDLPGNASMSLAS 329

>d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]} Length = 337

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Paracoccus denitrificans [TaxId: 266]

 Score = 52.5 bits (124), Expect = 1e-08
 Identities = 9/76 (11%), Positives = 28/76 (36%), Gaps = 5/76 (6%)

Query: 82  IRLWDVPTATSLKTLIGHTNYVFCINFNPQSNRIVSDTFNETIRIWDIKTGKCLKVLPAH 141
           +  +D+    S+K  +   +  + +N +   + +        +  +D +T +    +   
Sbjct: 262 LESFDLEKNASIKR-VPLPHSYYSVNVSTDGSTVWLGGALGDLAAYDAETLEKKGQVDLP 320

Query: 142 SDPVTAID----FNRD 153
            +   ++     F RD
Sbjct: 321 GNASMSLASVRLFTRD 336

>d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]} Length = 337

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Paracoccus denitrificans [TaxId: 266]

 Score = 42.9 bits (99), Expect = 2e-05
 Identities = 8/62 (12%), Positives = 17/62 (27%), Gaps = 3/62 (4%)

Query: 115 IVSDTFNETIRIWDIKTGKCLKVLPAHSDP--VTAIDFNRDG-TMIVTSSYDGLYRILDA 171
           I++    + + + D +     KV+                 G     T +       +D 
Sbjct: 4   ILAPARPDKLVVIDTEKMAVDKVITIADAGPTPMVPMVAPGGRIAYATVNKSESLVKIDL 63

Query: 172 ST 173
            T
Sbjct: 64  VT 65

>d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]} Length = 337

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Paracoccus denitrificans [TaxId: 266]

 Score = 41.7 bits (96), Expect = 5e-05
 Identities = 14/126 (11%), Positives = 33/126 (26%), Gaps = 8/126 (6%)

Query: 81  TIRLWDVPTATSLKTL--IGHTNYVFCINFNPQSNRI-VSDTFNETIRIWDIKTGKCLKV 137
            + + D       K +               P       +   +E++   D+ TG+ L  
Sbjct: 12  KLVVIDTEKMAVDKVITIADAGPTPMVPMVAPGGRIAYATVNKSESLVKIDLVTGETLGR 71

Query: 138 LPAHS-----DPVTAIDFNRDGTMIVTSSYDGLYRILDASTPNGKFILVGTLDNTLRLWN 192
           +   +       +     + DG  +          +        +  L      + R   
Sbjct: 72  IDLSTPEERVKSLFGAALSPDGKTLAIYESPVRLELTHFEVQPTRVALYDAETLSRRKAF 131

Query: 193 YSTRKI 198
            + R+I
Sbjct: 132 EAPRQI 137

>d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]} Length = 337

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Paracoccus denitrificans [TaxId: 266]

 Score = 39.4 bits (90), Expect = 2e-04
 Identities = 22/285 (7%), Positives = 60/285 (21%), Gaps = 47/285 (16%)

Query: 16  TQTLNGHLRAVSYVKFSHDGR-LLTSSSAEKTLLTYSLSSISNFDSTPPSPLQKFTGHEQ 74
             T+            +  GR    + +  ++L+   L +         S  ++      
Sbjct: 26  VITIADAGPTPMVPMVAPGGRIAYATVNKSESLVKIDLVTGETLGRIDLSTPEERVKSLF 85

Query: 75  GISDLATIRL-----------------------WDVPTATSLKTLIGHTNYVFCINFNPQ 111
           G +     +                               S +        +  + +   
Sbjct: 86  GAALSPDGKTLAIYESPVRLELTHFEVQPTRVALYDAETLSRRKAFEAPRQITMLAWARD 145

Query: 112 SNRIVSDTFNETIRIWDIKTGKCLKVLPAHSDPVTAIDFNRDGTMIVTSSYDGLYRILD- 170
            +++        + + D + G  ++  P  S             +       G+      
Sbjct: 146 GSKLYG--LGRDLHVMDPEAGTLVEDKPIQSWEAETYAQPDVLAVWNQHESSGVMATPFY 203

Query: 171 ASTPNGKFILVGTLDNTLRLWNYSTRKILKT----------------YSGYTNSKYCISS 214
            +  +            L   +  T ++                           Y +  
Sbjct: 204 TARKDIDPADPTAYRTGLLTMDLETGEMAMREVRIMDVFYFSTAVNPAKTRAFGAYNVLE 263

Query: 215 TFSVTNGKYI--VSHRDPVISVASHPAKNIIASGALDNDRTMKIW 257
           +F +     I  V       SV      + +  G       +  +
Sbjct: 264 SFDLEKNASIKRVPLPHSYYSVNVSTDGSTVWLGGALG--DLAAY 306

>d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} Length = 355

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

 Score = 52.9 bits (125), Expect = 1e-08
 Identities = 21/194 (10%), Positives = 50/194 (25%), Gaps = 34/194 (17%)

Query: 21  GHLRAVSYVKFSHDGRLLTSSSAEKTLLTYSLSSISNFDSTPPSPLQKFTGHEQGISDLA 80
                +++  +S     L   +    +         +  S     L       +      
Sbjct: 192 EDEFLINHPAYSQKAGRLVWPTYTGKI------HQIDLSSGDAKFLPAVEALTEAERADG 245

Query: 81  TIRLWDVPTATSLKTLIGHTNYVFCINFNPQSNRIVSDTFNETIRIWDIKTGKCLKVLPA 140
                    A        H           Q +     T +  + + D KTG+ L     
Sbjct: 246 WRPGGWQQVA-------YHRALDRIYLLVDQRDEWRHKTASRFVVVLDAKTGERLAKFE- 297

Query: 141 HSDPVTAIDFNRDGTMIVTSSYDGLYRILDASTPNGKFILVGTLDNTLRLWNYSTRKILK 200
               + +I+ ++D                           + T D TL + +  + + L+
Sbjct: 298 MGHEIDSINVSQDE--------------------KPLLYALSTGDKTLYIHDAESGEELR 337

Query: 201 TYSGYTNSKYCISS 214
           + +   +    I++
Sbjct: 338 SVNQLGHGPQVITT 351

>d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} Length = 355

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

 Score = 50.9 bits (120), Expect = 4e-08
 Identities = 16/143 (11%), Positives = 35/143 (24%), Gaps = 18/143 (12%)

Query: 14  TLTQTLNGHLRAVSYVKFSHDGRLLTSSSAEKTLLTYSLSSISNFDSTPPSPLQKFTGHE 73
                +     A     +   G    +       +   +     +     S         
Sbjct: 229 KFLPAVEALTEAERADGWRPGGWQQVAYHRALDRIYLLVDQRDEWRHKTASR-------- 280

Query: 74  QGISDLATIRLWDVPTATSLKTLIGHTNYVFCINFNPQSNR--IVSDTFNETIRIWDIKT 131
                   + + D  T   L       + +  IN +           T ++T+ I D ++
Sbjct: 281 -------FVVVLDAKTGERLAK-FEMGHEIDSINVSQDEKPLLYALSTGDKTLYIHDAES 332

Query: 132 GKCLKVLPAHSDPVTAIDFNRDG 154
           G+ L+ +         I     G
Sbjct: 333 GEELRSVNQLGHGPQVITTADMG 355

>d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} Length = 355

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

 Score = 39.8 bits (91), Expect = 2e-04
 Identities = 10/79 (12%), Positives = 23/79 (29%), Gaps = 14/79 (17%)

Query: 123 TIRIWDIKTGKCLKVLPAHSDPVTAIDFNRDGTMIVTSSYDGLYRILDASTPNGKFILVG 182
              + D + G+ + ++     P        DG+ I  +S                 I  G
Sbjct: 29  QQFVIDGEAGRVIGMIDGGFLP--NPVVADDGSFIAHASTV------------FSRIARG 74

Query: 183 TLDNTLRLWNYSTRKILKT 201
              + + +++  T      
Sbjct: 75  ERTDYVEVFDPVTLLPTAD 93

>d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]} Length = 301

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: YVTN repeat
domain: Surface layer protein
species: Archaeon Methanosarcina mazei [TaxId: 2209]

 Score = 50.3 bits (118), Expect = 6e-08
 Identities = 15/105 (14%), Positives = 43/105 (40%), Gaps = 2/105 (1%)

Query: 116 VSDTFNETIRIWDIKTGKCLKVLPAHSDPVTAIDFNRDG-TMIVTSSYDGLYRILDASTP 174
           ++++ ++ I + D+ + K    +P  S+P      + DG  + V +++     I+D +T 
Sbjct: 6   IANSESDNISVIDVTSNKVTATIPVGSNP-MGAVISPDGTKVYVANAHSNDVSIIDTATN 64

Query: 175 NGKFILVGTLDNTLRLWNYSTRKILKTYSGYTNSKYCISSTFSVT 219
           N    +           +   +++  T    +      +++ +V 
Sbjct: 65  NVIATVPAGSSPQGVAVSPDGKQVYVTNMASSTLSVIDTTSNTVA 109

>d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]} Length = 301

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: YVTN repeat
domain: Surface layer protein
species: Archaeon Methanosarcina mazei [TaxId: 2209]

 Score = 46.0 bits (107), Expect = 2e-06
 Identities = 11/65 (16%), Positives = 22/65 (33%), Gaps = 2/65 (3%)

Query: 81  TIRLWDVPTATSLKTLIGHTNYVFCINFNPQSNRI-VSDTFNETIRIWDIKTGKCLKVLP 139
           T+ + D  T      +         I   P   ++ V+ +F  T+ + D  T      + 
Sbjct: 225 TVSMIDTGTNKITARIPVG-PDPAGIAVTPDGKKVYVALSFCNTVSVIDTATNTITATMA 283

Query: 140 AHSDP 144
              +P
Sbjct: 284 VGKNP 288

>d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]} Length = 301

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: YVTN repeat
domain: Surface layer protein
species: Archaeon Methanosarcina mazei [TaxId: 2209]

 Score = 41.4 bits (95), Expect = 5e-05
 Identities = 16/104 (15%), Positives = 30/104 (28%), Gaps = 22/104 (21%)

Query: 98  GHTNYVFCINFNPQSNRIVSDTFNETIRIWDIKTGKCLKVLPAHSDPVTAIDFNRDGTMI 157
              + +       ++     D +  T+ + D  T K    +P   DP   I    DG  +
Sbjct: 200 AAPSGIAVNPEGTKAYVTNVDKYFNTVSMIDTGTNKITARIPVGPDP-AGIAVTPDGKKV 258

Query: 158 VTSSYDGLYRILDASTPNGKFILVGTLDNTLRLWNYSTRKILKT 201
             +                         NT+ + + +T  I  T
Sbjct: 259 YVALSF---------------------CNTVSVIDTATNTITAT 281

>d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]} Length = 301

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: YVTN repeat
domain: Surface layer protein
species: Archaeon Methanosarcina mazei [TaxId: 2209]

 Score = 38.3 bits (87), Expect = 5e-04
 Identities = 10/55 (18%), Positives = 21/55 (38%), Gaps = 2/55 (3%)

Query: 81  TIRLWDVPTATSLKTLIGHTNYVFCINFNPQSNRI-VSDTFNETIRIWDIKTGKC 134
            I + DV +     T+   +N       +P   ++ V++  +  + I D  T   
Sbjct: 13  NISVIDVTSNKVTATIPVGSN-PMGAVISPDGTKVYVANAHSNDVSIIDTATNNV 66

>d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]} Length = 426

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Pseudomonas aeruginosa [TaxId: 287]

 Score = 50.3 bits (119), Expect = 7e-08
 Identities = 9/75 (12%), Positives = 23/75 (30%), Gaps = 1/75 (1%)

Query: 106 INFNPQSNRIVSDTFNETIRIWDIKTGKCLKVLPAHSDPVTAIDFNRDGTMIVTSSYDGL 165
            + +  +   V+      I + D  + K +KV+            +  G  ++    D  
Sbjct: 26  NDLDLPNLFSVTLRDAGQIALVDGDSKKIVKVIDTGYAV-HISRMSASGRYLLVIGRDAR 84

Query: 166 YRILDASTPNGKFIL 180
             ++D        + 
Sbjct: 85  IDMIDLWAKEPTKVA 99

>d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]} Length = 426

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Pseudomonas aeruginosa [TaxId: 287]

 Score = 48.0 bits (113), Expect = 5e-07
 Identities = 25/189 (13%), Positives = 52/189 (27%), Gaps = 8/189 (4%)

Query: 77  SDLATIRLWDVPTATSLKTLIGHTNYVFCINFNPQSNRIVSDTFNETIRIWDIKTGKCLK 136
            D   I L D  +   +K +      V     +     ++    +  I + D+   +  K
Sbjct: 39  RDAGQIALVDGDSKKIVKVIDTG-YAVHISRMSASGRYLLVIGRDARIDMIDLWAKEPTK 97

Query: 137 VL-----PAHSDPVTAIDFNRDGTM-IVTSSYDGLYRILDASTPNGKFILVGTLDNTLRL 190
           V             ++     +    I  + +   + I+D  T   K I+      T+  
Sbjct: 98  VAEIKIGIEARSVESSKFKGYEDRYTIAGAYWPPQFAIMDGETLEPKQIVSTR-GMTVDT 156

Query: 191 WNYSTRKILKTYSGYTNSKYCISSTFSVTNGKYIVSHRDPVISVASHPAKNIIASGALDN 250
             Y     +            I +         +       ++V S  A   +A G  D+
Sbjct: 157 QTYHPEPRVAAIIASHEHPEFIVNVKETGKVLLVNYKDIDNLTVTSIGAAPFLADGGWDS 216

Query: 251 DRTMKIWTQ 259
                +   
Sbjct: 217 SHRYFMTAA 225

>d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]} Length = 426

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Pseudomonas aeruginosa [TaxId: 287]

 Score = 45.3 bits (106), Expect = 3e-06
 Identities = 24/142 (16%), Positives = 49/142 (34%), Gaps = 25/142 (17%)

Query: 83  RLWDVPTATSLKTLIGHTNYVFCINFNPQSNRIVSDT-------FNETIRIWDIKTGKCL 135
           +         +  L G       I  +P+S+ +  DT        ++++ ++D+K     
Sbjct: 286 KNHPQYAWKKVAELQGQGGGSLFIKTHPKSSHLYVDTTFNPDARISQSVAVFDLKNLDAK 345

Query: 136 K---------VLPAHSDPVTAIDFNRDGTMIVTSSYDGLYRILDASTPNGKFILVGTLDN 186
                      L   +  V   ++N+ G  +  S ++G          +   ++V   D 
Sbjct: 346 YQVLPIAEWADLGEGAKRVVQPEYNKRGDEVWFSVWNG-------KNDSSALVVVD--DK 396

Query: 187 TLRLWNYSTRKILKTYSGYTNS 208
           TL+L        L T +G  N 
Sbjct: 397 TLKLKAVVKDPRLITPTGKFNV 418

>d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]} Length = 426

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Pseudomonas aeruginosa [TaxId: 287]

 Score = 37.6 bits (86), Expect = 0.001
 Identities = 15/98 (15%), Positives = 30/98 (30%), Gaps = 22/98 (22%)

Query: 127 WDIK-TGKCLKVLPAHSDPVTAIDFNRDGT--MIVTSSYDGLYRILDAST---------- 173
           W +    +  KVL    D       + D      VT    G   ++D  +          
Sbjct: 2   WGMPEMRESWKVLVKPEDRPKKQLNDLDLPNLFSVTLRDAGQIALVDGDSKKIVKVIDTG 61

Query: 174 ---------PNGKFILVGTLDNTLRLWNYSTRKILKTY 202
                     +G+++LV   D  + + +   ++  K  
Sbjct: 62  YAVHISRMSASGRYLLVIGRDARIDMIDLWAKEPTKVA 99

>d1mdah_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} Length = 368

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

 Score = 48.1 bits (113), Expect = 4e-07
 Identities = 13/194 (6%), Positives = 43/194 (22%), Gaps = 37/194 (19%)

Query: 8   ESFRPYTLTQTLNGHLRAVSYVKFSHDGRLLTSSSAEKTLLTYSLSSISNFDSTPPSPLQ 67
            +       Q       +    + ++ G L+ + ++             +  +   +   
Sbjct: 196 PAAAGIVGAQCTGAQNCSSQAAQANYPGMLVWAVASSIL--------QGDIPAAGATMKA 247

Query: 68  KFTGHEQGISDLATIRLWDVPTATSLKTLIGHTNYVFCINFNPQSNRIVSDTFNETIRIW 127
              G+E                   +   + +T+ +         +        E     
Sbjct: 248 AIDGNE-----SGRKADNFRSAGFQMVAKLKNTDGIM---ILTVEHSRSCLAAAENTSSV 299

Query: 128 DIKTGKCLKVLPAHSDPVTAIDFNRDGTMIVTSSYDGLYRILDASTPNGKFILVGTLDNT 187
               G+    +  +     AI   +DG                                 
Sbjct: 300 TASVGQTSGPIS-NGHDSDAIIAAQDGASDN--------------------YANSAGTEV 338

Query: 188 LRLWNYSTRKILKT 201
           L +++ ++ +   +
Sbjct: 339 LDIYDAASDQDQSS 352

>d1mdah_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} Length = 368

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

 Score = 43.8 bits (102), Expect = 1e-05
 Identities = 10/133 (7%), Positives = 28/133 (21%), Gaps = 19/133 (14%)

Query: 14  TLTQTLNGHLRAVSYVKFSHDGRLLTSSSAEKTLLTYSLSSISNFDSTPPSPLQKFTGHE 73
           T+   ++G+        F   G  + +       +                         
Sbjct: 244 TMKAAIDGNESGRKADNFRSAGFQMVAKLKNTDGIMILTV----------------EHSR 287

Query: 74  QGISDLATIRLWDVPTATSLKTLIGHTNYVFCINFNPQSNR--IVSDTFNETIRIWDIKT 131
             ++              +    I + +    I            +    E + I+D  +
Sbjct: 288 SCLAAAENTSSVTASVGQTSGP-ISNGHDSDAIIAAQDGASDNYANSAGTEVLDIYDAAS 346

Query: 132 GKCLKVLPAHSDP 144
            +    +     P
Sbjct: 347 DQDQSSVELDKGP 359

>d1mdah_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} Length = 368

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

 Score = 39.6 bits (91), Expect = 2e-04
 Identities = 5/99 (5%), Positives = 21/99 (21%), Gaps = 16/99 (16%)

Query: 109 NPQSNRIVSDTFNETIRIWDIKTGKCLKVLPAHSDPVTAIDFNRDGTMIVTSSYDGLYRI 168
           +    R       + + ++D  T   +  +     P  ++                    
Sbjct: 83  STSFARSAKGKRTDYVEVFDPVTFLPIADIELPDAPRFSVGPRVHII------------- 129

Query: 169 LDASTPNGKFILVGT-LDNTLRLWNYSTRKILKTYSGYT 206
              +  +   +L      +     +       +     +
Sbjct: 130 --GNCASSACLLFFLFGSSAAAGLSVPGASDDQLTKSAS 166

>d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]} Length = 432

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Paracoccus denitrificans [TaxId: 266]

 Score = 47.5 bits (112), Expect = 7e-07
 Identities = 21/180 (11%), Positives = 43/180 (23%), Gaps = 28/180 (15%)

Query: 105 CINFNPQSNRIVSDTFNETIRIWDIKTGKCLKVLPAHSDPVTAIDFNRDGTMIVTSSYDG 164
             +++ ++   V+      I + D  T +   VL            +  G  +     DG
Sbjct: 25  MNDWDLENLFSVTLRDAGQIALIDGSTYEIKTVLDTGYAVH-ISRLSASGRYLFVIGRDG 83

Query: 165 LYRILDAST-------------------------PNGKFILV-GTLDNTLRLWNYSTRKI 198
              ++D                               K+ +          + +  T + 
Sbjct: 84  KVNMIDLWMKEPTTVAEIKIGSEARSIETSKMEGWEDKYAIAGAYWPPQYVIMDGETLEP 143

Query: 199 LKTYSGYTNSKYCISSTFSVTNGKYIVSHRDPVISVASHPAKNIIASGALDNDRTMKIWT 258
            K  S    +               + SH  P   V       I+     D +  +K   
Sbjct: 144 KKIQSTRGMTYDEQEYHPEPRVAAILASHYRPEFIVNVKETGKILLVDYTDLN-NLKTTE 202

>d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]} Length = 432

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Paracoccus denitrificans [TaxId: 266]

 Score = 41.7 bits (97), Expect = 4e-05
 Identities = 26/195 (13%), Positives = 48/195 (24%), Gaps = 42/195 (21%)

Query: 13  YTLTQTLNGHLRAVSYVKFSHDGRLLTSSSAEKTLLTYSLSSISNFDSTPPSPLQKFTGH 72
           Y +   L+    AV   + S  GR L     +  +                         
Sbjct: 52  YEIKTVLDTG-YAVHISRLSASGRYLFVIGRDGKVNMI---------------------- 88

Query: 73  EQGISDLATIRLWDVPTATSLKTLIGHTNYVFCINFNPQSNR-IVSDTFNETIRIWDIKT 131
                DL       V     +K      +         +    I    +     I D +T
Sbjct: 89  -----DLWMKEPTTVAE---IKIGSEARSIETSKMEGWEDKYAIAGAYWPPQYVIMDGET 140

Query: 132 GKCLKVLPAHSDPVTAIDFNRDGTMIVTSSYDGLYRILDASTPNGKFILVGTLDNTLRLW 191
            +  K+           +++ +  +              AS    +FI+       + L 
Sbjct: 141 LEPKKIQSTRGMTYDEQEYHPEPRVAAIL----------ASHYRPEFIVNVKETGKILLV 190

Query: 192 NYSTRKILKTYSGYT 206
           +Y+    LKT     
Sbjct: 191 DYTDLNNLKTTEISA 205

>d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]} Length = 432

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Paracoccus denitrificans [TaxId: 266]

 Score = 39.8 bits (92), Expect = 2e-04
 Identities = 19/98 (19%), Positives = 33/98 (33%), Gaps = 12/98 (12%)

Query: 110 PQSNRIVSDTFNETIRIWDIKTGKCLKVLPAHSDPVTAIDFNRDGTMIVTSSYDGLYRIL 169
                +  D  +   +   I        +      V   +FN+DGT +  S ++G     
Sbjct: 338 FDIKAMTGDGSDPEFKTLPIAEWA---GITEGQPRVVQGEFNKDGTEVWFSVWNG----- 389

Query: 170 DASTPNGKFILVGTLDNTLRLWNYSTRKILKTYSGYTN 207
                    ++V   D TL L +    + L T +G  N
Sbjct: 390 --KDQESALVVVD--DKTLELKHVIKDERLVTPTGKFN 423

>d1ri6a_ b.69.11.1 (A:) Putative isomerase YbhE {Escherichia coli [TaxId: 562]} Length = 333

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Putative isomerase YbhE
family: Putative isomerase YbhE
domain: Putative isomerase YbhE
species: Escherichia coli [TaxId: 562]

 Score = 41.7 bits (96), Expect = 4e-05
 Identities = 14/89 (15%), Positives = 28/89 (31%), Gaps = 6/89 (6%)

Query: 81  TIRLWDVPTATSLKTL--IGHTNYVFCINFNPQSNRI-VSDTFNETIRIWDIKTGKCLKV 137
            I +W++    +L     +     V  +  +P    + V       +  + I        
Sbjct: 15  QIHVWNLNHEGALTLTQVVDVPGQVQPMVVSPDKRYLYVGVRPEFRVLAYRIAPDDGALT 74

Query: 138 LPAHSDP---VTAIDFNRDGTMIVTSSYD 163
             A S     +T I  +  G  +   SY+
Sbjct: 75  FAAESALPGSLTHISTDHQGQFVFVGSYN 103

>d1ri6a_ b.69.11.1 (A:) Putative isomerase YbhE {Escherichia coli [TaxId: 562]} Length = 333

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Putative isomerase YbhE
family: Putative isomerase YbhE
domain: Putative isomerase YbhE
species: Escherichia coli [TaxId: 562]

 Score = 36.3 bits (82), Expect = 0.002
 Identities = 7/68 (10%), Positives = 21/68 (30%), Gaps = 3/68 (4%)

Query: 116 VSDTFNETIRIWDIKTGKCLKVLP--AHSDPVTAIDFNRDG-TMIVTSSYDGLYRILDAS 172
           ++   ++ I +W++     L +         V  +  + D   + V    +        +
Sbjct: 8   IASPESQQIHVWNLNHEGALTLTQVVDVPGQVQPMVVSPDKRYLYVGVRPEFRVLAYRIA 67

Query: 173 TPNGKFIL 180
             +G    
Sbjct: 68  PDDGALTF 75

>d1qnia2 b.69.3.1 (A:10-450) Nitrous oxide reductase, N-terminal domain {Pseudomonas nautica [TaxId: 2743]} Length = 441

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nitrous oxide reductase, N-terminal domain
family: Nitrous oxide reductase, N-terminal domain
domain: Nitrous oxide reductase, N-terminal domain
species: Pseudomonas nautica [TaxId: 2743]

 Score = 39.5 bits (92), Expect = 3e-04
 Identities = 40/253 (15%), Positives = 71/253 (28%), Gaps = 44/253 (17%)

Query: 21  GHLRAVSYVKFSHDGR-LLTSSSAEKTLLTYSLSSISNFDSTPPSPLQKFTGHEQGISDL 79
            H   +S     +DG+ L  +  A   +    L                          +
Sbjct: 69  CHHPHISMTDGRYDGKYLFINDKANTRVARIRLD------------------------IM 104

Query: 80  ATIRLWDVPTATSLKTLI----GHTNYVFC-----INFNPQSNRIVSDTFNETIRIWDIK 130
            T ++  +P   ++  L       TNYVFC     I           D         D +
Sbjct: 105 KTDKITHIPNVQAIHGLRLQKVPKTNYVFCNAEFVIPQPNDGTDFSLDNSYTMFTAIDAE 164

Query: 131 TGKCLKVLPAHSDPVTAIDFNRDGTMIVTSSYDG--LYRILDASTPNGKFILVGTLDNTL 188
           T      +    +     D +  G    ++ Y+      +      +  +++V    N  
Sbjct: 165 TMDVAWQVIVDGNL-DNTDADYTGKYATSTCYNSERAVDLAGTMRNDRDWVVVF---NVE 220

Query: 189 RLWNYSTRKILKTYSGYTNSKYCISSTFSVTNGKYIVSHRDPVISVASHPAKNIIASGAL 248
           R+         KT                 T  +YI   ++P     S   K  IA+G L
Sbjct: 221 RIAAAVKAGNFKTIGDSKVPVVDGRGESEFT--RYIPVPKNPHGLNTSPDGKYFIANGKL 278

Query: 249 DNDRTMKIWTQEK 261
               T+ +   +K
Sbjct: 279 SP--TVSVIAIDK 289

>d2dg1a1 b.68.6.1 (A:6-324) Lactonase Drp35 {Staphylococcus aureus [TaxId: 1280]} Length = 319

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Lactonase Drp35
species: Staphylococcus aureus [TaxId: 1280]

 Score = 36.2 bits (82), Expect = 0.003
 Identities = 13/56 (23%), Positives = 23/56 (41%)

Query: 108 FNPQSNRIVSDTFNETIRIWDIKTGKCLKVLPAHSDPVTAIDFNRDGTMIVTSSYD 163
           F+ Q    + D F   I   + +T +  +   +H     AI  ++DG + V    D
Sbjct: 47  FDRQGQLFLLDVFEGNIFKINPETKEIKRPFVSHKANPAAIKIHKDGRLFVCYLGD 102

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	262
d1nr0a1	311	Actin interacting protein 1 {Nematode (Caenorhabdi	100.0
d1vyhc1	317	Platelet-activating factor acetylhydrolase IB subu	100.0
d1tbga_	340	beta1-subunit of the signal-transducing G protein	100.0
d1gxra_	337	Groucho/tle1, C-terminal domain {Human (Homo sapie	100.0
d1erja_	388	Tup1, C-terminal domain {Baker's yeast (Saccharomy	100.0
d1gxra_	337	Groucho/tle1, C-terminal domain {Human (Homo sapie	100.0
d2ovrb2	342	F-box/WD repeat-containing protein 7, FBXW7 {Human	100.0
d1k8kc_	371	Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taur	100.0
d1nr0a2	299	Actin interacting protein 1 {Nematode (Caenorhabdi	100.0
d1pgua1	325	Actin interacting protein 1 {Baker's yeast (Saccha	100.0
d1nr0a1	311	Actin interacting protein 1 {Nematode (Caenorhabdi	100.0
d1k8kc_	371	Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taur	100.0
d1erja_	388	Tup1, C-terminal domain {Baker's yeast (Saccharomy	100.0
d1nexb2	355	Cdc4 propeller domain {Baker's yeast (Saccharomyce	100.0
d1pgua2	287	Actin interacting protein 1 {Baker's yeast (Saccha	100.0
d1yfqa_	342	Cell cycle arrest protein BUB3 {Baker's yeast (Sac	100.0
d1p22a2	293	F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Hom	99.98
d1sq9a_	393	Antiviral protein Ski8 (Ski8p) {Baker's yeast (Sac	99.97
d1nexb2	355	Cdc4 propeller domain {Baker's yeast (Saccharomyce	99.97
d1tbga_	340	beta1-subunit of the signal-transducing G protein	99.97
d1pgua1	325	Actin interacting protein 1 {Baker's yeast (Saccha	99.96
d1sq9a_	393	Antiviral protein Ski8 (Ski8p) {Baker's yeast (Sac	99.96
d1nr0a2	299	Actin interacting protein 1 {Nematode (Caenorhabdi	99.96
d1k32a3	360	Tricorn protease domain 2 {Archaeon Thermoplasma a	99.96
d1vyhc1	317	Platelet-activating factor acetylhydrolase IB subu	99.96
d1p22a2	293	F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Hom	99.95
d1yfqa_	342	Cell cycle arrest protein BUB3 {Baker's yeast (Sac	99.94
d2ovrb2	342	F-box/WD repeat-containing protein 7, FBXW7 {Human	99.94
d1pgua2	287	Actin interacting protein 1 {Baker's yeast (Saccha	99.92
d1l0qa2	301	Surface layer protein {Archaeon Methanosarcina maz	99.91
d1k32a3	360	Tricorn protease domain 2 {Archaeon Thermoplasma a	99.91
d1qksa2	432	C-terminal (heme d1) domain of cytochrome cd1-nitr	99.91
d1pbyb_	337	Quinohemoprotein amine dehydrogenase B chain {Para	99.89
d1hzua2	426	C-terminal (heme d1) domain of cytochrome cd1-nitr	99.88
d1jmxb_	346	Quinohemoprotein amine dehydrogenase B chain {Pseu	99.87
d1ri6a_	333	Putative isomerase YbhE {Escherichia coli [TaxId:	99.83
d1qksa2	432	C-terminal (heme d1) domain of cytochrome cd1-nitr	99.83
d2madh_	373	Methylamine dehydrogenase, H-chain {Gram negative	99.79
d1hzua2	426	C-terminal (heme d1) domain of cytochrome cd1-nitr	99.78
d2bbkh_	355	Methylamine dehydrogenase, H-chain {Paracoccus den	99.76
d1l0qa2	301	Surface layer protein {Archaeon Methanosarcina maz	99.74
d1pbyb_	337	Quinohemoprotein amine dehydrogenase B chain {Para	99.68
d1mdah_	368	Methylamine dehydrogenase, H-chain {Paracoccus den	99.65
d1ri6a_	333	Putative isomerase YbhE {Escherichia coli [TaxId:	99.64
d2madh_	373	Methylamine dehydrogenase, H-chain {Gram negative	99.61
d1jmxb_	346	Quinohemoprotein amine dehydrogenase B chain {Pseu	99.61
d2bgra1	470	Dipeptidyl peptidase IV/CD26, N-terminal domain {P	99.58
d2bbkh_	355	Methylamine dehydrogenase, H-chain {Paracoccus den	99.47
d2bgra1	470	Dipeptidyl peptidase IV/CD26, N-terminal domain {P	99.34
d1q7fa_	279	Brain tumor cg10719-pa {Fruit fly (Drosophila mela	99.34
d2p4oa1	302	Hypothetical protein All0351 homologue {Nostoc pun	99.29
d1qnia2	441	Nitrous oxide reductase, N-terminal domain {Pseudo	99.28
d1mdah_	368	Methylamine dehydrogenase, H-chain {Paracoccus den	99.27
d1qnia2	441	Nitrous oxide reductase, N-terminal domain {Pseudo	99.17
d1rwia_	260	Serine/threonine-protein kinase PknD {Mycobacteriu	99.11
d1jofa_	365	3-carboxy-cis,cis-mucoante lactonizing enzyme {Neu	99.1
d1pjxa_	314	Diisopropylfluorophosphatase (phosphotriesterase,	99.02
d2p4oa1	302	Hypothetical protein All0351 homologue {Nostoc pun	98.97
d2hqsa1	269	TolB, C-terminal domain {Escherichia coli [TaxId:	98.94
d2dg1a1	319	Lactonase Drp35 {Staphylococcus aureus [TaxId: 128	98.78
d1rwia_	260	Serine/threonine-protein kinase PknD {Mycobacteriu	98.72
d2ghsa1	295	Regucalcin {Agrobacterium tumefaciens [TaxId: 358]	98.69
d1jofa_	365	3-carboxy-cis,cis-mucoante lactonizing enzyme {Neu	98.68
d2dg1a1	319	Lactonase Drp35 {Staphylococcus aureus [TaxId: 128	98.66
d1xfda1	465	Dipeptidyl aminopeptidase-like protein 6, DPP6, N-	98.64
d1pjxa_	314	Diisopropylfluorophosphatase (phosphotriesterase,	98.61
d2hqsa1	269	TolB, C-terminal domain {Escherichia coli [TaxId:	98.5
d1q7fa_	279	Brain tumor cg10719-pa {Fruit fly (Drosophila mela	98.42
d1k32a2	281	Tricorn protease N-terminal domain {Archaeon Therm	98.39
d1xfda1	465	Dipeptidyl aminopeptidase-like protein 6, DPP6, N-	98.16
d1k3ia3	387	Galactose oxidase, central domain {Fungi (Fusarium	97.64
d1fwxa2	459	Nitrous oxide reductase, N-terminal domain {Paraco	97.49
d1k32a2	281	Tricorn protease N-terminal domain {Archaeon Therm	97.44
d1utca2	327	Clathrin heavy-chain terminal domain {Rat (Rattus	97.43
d2ghsa1	295	Regucalcin {Agrobacterium tumefaciens [TaxId: 358]	97.26
d1kv9a2	560	Quinoprotein alcohol dehydrogenase, N-terminal dom	96.93
d2ad6a1	571	Methanol dehydrogenase, heavy chain {Methylophilus	96.8
d1ijqa1	266	Low density lipoprotein (LDL) receptor {Human (Hom	96.76
d1fwxa2	459	Nitrous oxide reductase, N-terminal domain {Paraco	96.67
d1kv9a2	560	Quinoprotein alcohol dehydrogenase, N-terminal dom	96.4
d1kb0a2	573	Quinoprotein alcohol dehydrogenase, N-terminal dom	96.25
d1w6sa_	596	Methanol dehydrogenase, heavy chain {Methylobacter	96.21
d1v04a_	340	Serum paraoxonase/arylesterase 1, PON1 {Rabit (Ory	96.17
d1npea_	263	Nidogen {Mouse (Mus musculus) [TaxId: 10090]}	96.06
d2ad6a1	571	Methanol dehydrogenase, heavy chain {Methylophilus	95.84
d1h6la_	353	Thermostable phytase (3-phytase) {Bacillus amyloli	95.78
d1kb0a2	573	Quinoprotein alcohol dehydrogenase, N-terminal dom	95.62
d1flga_	582	Ethanol dehydrogenase {Pseudomonas aeruginosa [Tax	95.59
d1qfma1	430	Prolyl oligopeptidase, N-terminal domain {Pig (Sus	95.53
d1k3ia3	387	Galactose oxidase, central domain {Fungi (Fusarium	95.42
d1flga_	582	Ethanol dehydrogenase {Pseudomonas aeruginosa [Tax	94.87
d1utca2	327	Clathrin heavy-chain terminal domain {Rat (Rattus	94.5
d1w6sa_	596	Methanol dehydrogenase, heavy chain {Methylobacter	94.27
d1crua_	450	Soluble quinoprotein glucose dehydrogenase {Acinet	93.78
d1xipa_	381	Nucleoporin NUP159 {Baker's yeast (Saccharomyces c	93.0
d1npea_	263	Nidogen {Mouse (Mus musculus) [TaxId: 10090]}	92.93
d1qfma1	430	Prolyl oligopeptidase, N-terminal domain {Pig (Sus	92.87
d1v04a_	340	Serum paraoxonase/arylesterase 1, PON1 {Rabit (Ory	92.45
d1h6la_	353	Thermostable phytase (3-phytase) {Bacillus amyloli	92.45
d2hu7a1	313	Acylamino-acid-releasing enzyme, N-terminal donain	91.37
d1dlpa1	115	Fetuin-binding protein Scafet precursor {Bluebell	87.72
d1ijqa1	266	Low density lipoprotein (LDL) receptor {Human (Hom	86.33
d1zgka1	288	Kelch-like ECH-associated protein 1, KEAP1 {Human	83.13

>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=100.00  E-value=2.4e-40  Score=254.21  Aligned_cols=226  Identities=19%  Similarity=0.267  Sum_probs=186.9

Q ss_pred             ceeee--cccccceecccCcCceEEEEEccCCCeEEEecCCCeEEEeecCCCCCCCCCCCCCCccccCCccccccc----
Q 042146            6 SLESF--RPYTLTQTLNGHLRAVSYVKFSHDGRLLTSSSAEKTLLTYSLSSISNFDSTPPSPLQKFTGHEQGISDL----   79 (262)
Q Consensus         6 ~i~~~--~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~----   79 (262)
                      .+..|  +.....+.+.+|.+.|++++|+|+|++||+|+.||+|++||+......      ....+..|...+..+    
T Consensus        39 ~v~i~~~~~~~~~~~~~~H~~~v~~~~~sp~g~~latg~~dg~i~iwd~~~~~~~------~~~~~~~~~~~v~~v~~s~  112 (311)
T d1nr0a1          39 SVYTVPVGSLTDTEIYTEHSHQTTVAKTSPSGYYCASGDVHGNVRIWDTTQTTHI------LKTTIPVFSGPVKDISWDS  112 (311)
T ss_dssp             EEEEEETTCSSCCEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEESSSTTCC------EEEEEECSSSCEEEEEECT
T ss_pred             EEEEEECCCCceeEEEcCCCCCEEEEEEeCCCCeEeccccCceEeeeeeeccccc------cccccccccCccccccccc
Confidence            34444  466788889999999999999999999999999999999998764321      111122222222221    


Q ss_pred             -------------eeEEEEecCCCccceecccCCcceEEEEEeCCCCE-EEeecCCCeEEEEECCCCeeeeeeecCCCCe
Q 042146           80 -------------ATIRLWDVPTATSLKTLIGHTNYVFCINFNPQSNR-IVSDTFNETIRIWDIKTGKCLKVLPAHSDPV  145 (262)
Q Consensus        80 -------------~~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~-l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~v  145 (262)
                                   ..+++|++++++....+.+|...|.+++|+|++++ +++|+.||.|++||+++++....+..|..+|
T Consensus       113 d~~~l~~~~~~~~~~~~v~~~~~~~~~~~l~~h~~~v~~v~~~~~~~~~l~sgs~d~~i~i~d~~~~~~~~~~~~~~~~i  192 (311)
T d1nr0a1         113 ESKRIAAVGEGRERFGHVFLFDTGTSNGNLTGQARAMNSVDFKPSRPFRIISGSDDNTVAIFEGPPFKFKSTFGEHTKFV  192 (311)
T ss_dssp             TSCEEEEEECCSSCSEEEEETTTCCBCBCCCCCSSCEEEEEECSSSSCEEEEEETTSCEEEEETTTBEEEEEECCCSSCE
T ss_pred             cccccccccccccccccccccccccccccccccccccccccccccceeeecccccccccccccccccccccccccccccc
Confidence                         14889999999999999999999999999998885 7889999999999999999999999999999


Q ss_pred             eeEEEccCCCEEEEEeCCCeEEEEeCCC---------------------------CCccEEEEEcCCCeEEEEecCCCce
Q 042146          146 TAIDFNRDGTMIVTSSYDGLYRILDAST---------------------------PNGKFILVGTLDNTLRLWNYSTRKI  198 (262)
Q Consensus       146 ~~~~~~~~~~~l~~~~~dg~i~~~d~~~---------------------------~~~~~l~~~~~dg~i~i~d~~~~~~  198 (262)
                      +++.|+|+++++++++.|+.|++||.+.                           |++++|++|+.||.|+|||++++++
T Consensus       193 ~~v~~~p~~~~l~~~~~d~~v~~~d~~~~~~~~~~~~~~~~~~~h~~~V~~~~~s~~~~~l~tgs~Dg~v~iwd~~t~~~  272 (311)
T d1nr0a1         193 HSVRYNPDGSLFASTGGDGTIVLYNGVDGTKTGVFEDDSLKNVAHSGSVFGLTWSPDGTKIASASADKTIKIWNVATLKV  272 (311)
T ss_dssp             EEEEECTTSSEEEEEETTSCEEEEETTTCCEEEECBCTTSSSCSSSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEE
T ss_pred             cccccCccccccccccccccccccccccccccccccccccccccccccccccccCCCCCEEEEEeCCCeEEEEECCCCcE
Confidence            9999999999999999999999999764                           7889999999999999999999999


Q ss_pred             eeEEeccCCceeEEEEEEecCCCeeEEccccceEEEEEcCCCCeEEEeeecCCCcEEEEeec
Q 042146          199 LKTYSGYTNSKYCISSTFSVTNGKYIVSHRDPVISVASHPAKNIIASGALDNDRTMKIWTQE  260 (262)
Q Consensus       199 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~d~d~~i~iw~~~  260 (262)
                      ++++..+..                   +...+.++.|+  +..|++++  .||.|++||++
T Consensus       273 ~~~l~~~~~-------------------~~~~~~~~~~~--~~~l~s~s--~dG~i~~wd~d  311 (311)
T d1nr0a1         273 EKTIPVGTR-------------------IEDQQLGIIWT--KQALVSIS--ANGFINFVNPE  311 (311)
T ss_dssp             EEEEECCSS-------------------GGGCEEEEEEC--SSCEEEEE--TTCCEEEEETT
T ss_pred             EEEEECCCC-------------------ccceEEEEEec--CCEEEEEE--CCCEEEEEeCC
Confidence            998876432                   23344455554  66799999  89999999974

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=100.00  E-value=1.9e-39  Score=248.07  Aligned_cols=221  Identities=28%  Similarity=0.488  Sum_probs=186.3

Q ss_pred             ccceecccCcCceEEEEEccCCCeEEEecCCCeEEEeecCCCCCCCCCCC--CCC-------------------------
Q 042146           14 TLTQTLNGHLRAVSYVKFSHDGRLLTSSSAEKTLLTYSLSSISNFDSTPP--SPL-------------------------   66 (262)
Q Consensus        14 ~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~--~~~-------------------------   66 (262)
                      ...++|++|.++|++++|+|++++||||+.||+|+|||+++.........  ..+                         
T Consensus         8 ~~~~~L~GH~~~I~~l~~sp~~~~l~s~s~Dg~i~iWd~~~~~~~~~~~~h~~~V~~~~~~~~~~~~~~~~~~~~~~~~~   87 (317)
T d1vyhc1           8 PEKYALSGHRSPVTRVIFHPVFSVMVSASEDATIKVWDYETGDFERTLKGHTDSVQDISFDHSGKLLASCSADMTIKLWD   87 (317)
T ss_dssp             SCSCEEECCSSCEEEEEECSSSSEEEEEESSSCEEEEETTTCCCCEEECCCSSCEEEEEECTTSSEEEEEETTSCCCEEE
T ss_pred             CccEEEcCCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCCEEEEEeCCCCcEEEEeeeccccccccccccccccccc
Confidence            35668999999999999999999999999999999999876432211100  000                         


Q ss_pred             -------ccccCCccccc---------------cceeEEEEecCCCccceecccCCcceEEEEEeCCCCEEEeecCCCeE
Q 042146           67 -------QKFTGHEQGIS---------------DLATIRLWDVPTATSLKTLIGHTNYVFCINFNPQSNRIVSDTFNETI  124 (262)
Q Consensus        67 -------~~~~~~~~~v~---------------~~~~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i  124 (262)
                             ..+..+...+.               ..+.+++||+++++.+..+..|...+.+++++|++++|++++.|+.|
T Consensus        88 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~v  167 (317)
T d1vyhc1          88 FQGFECIRTMHGHDHNVSSVSIMPNGDHIVSASRDKTIKMWEVQTGYCVKTFTGHREWVRMVRPNQDGTLIASCSNDQTV  167 (317)
T ss_dssp             TTSSCEEECCCCCSSCEEEEEECSSSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECTTSSEEEEEETTSCE
T ss_pred             ccccccccccccccccceeeeccCCCceEEeeccCcceeEeecccceeeeEEccCCCcceeeecccCCCEEEEEeCCCeE
Confidence                   00001111110               11178999999999999999999999999999999999999999999


Q ss_pred             EEEECCCCeeeeeeecCCCCeeeEEEccCC--------------------CEEEEEeCCCeEEEEeCCC-----------
Q 042146          125 RIWDIKTGKCLKVLPAHSDPVTAIDFNRDG--------------------TMIVTSSYDGLYRILDAST-----------  173 (262)
Q Consensus       125 ~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~--------------------~~l~~~~~dg~i~~~d~~~-----------  173 (262)
                      ++|++++++....+..|...+.++.|+|++                    ..+++++.|+.|++||+++           
T Consensus       168 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~~~  247 (317)
T d1vyhc1         168 RVWVVATKECKAELREHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCLMTLVGHD  247 (317)
T ss_dssp             EEEETTTCCEEEEECCCSSCEEEEEECCSCGGGGGGGCCSCC-------CCEEEEEETTSEEEEEETTTTEEEEEEECCS
T ss_pred             EEEeeccceeeEEEecCCCCceEEEEeeccccceeeccccceeeeeccCCceeEeccCCCEEEEEECCCCcEEEEEeCCC
Confidence            999999999999999999999999998753                    4689999999999999876           


Q ss_pred             ---------CCccEEEEEcCCCeEEEEecCCCceeeEEeccCCceeEEEEEEecCCCeeEEccccceEEEEEcCCCCeEE
Q 042146          174 ---------PNGKFILVGTLDNTLRLWNYSTRKILKTYSGYTNSKYCISSTFSVTNGKYIVSHRDPVISVASHPAKNIIA  244 (262)
Q Consensus       174 ---------~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~  244 (262)
                               +++++|++|+.||.|++||+++++++..+.+                      |..+|++++|+|++++|+
T Consensus       248 ~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~----------------------h~~~V~~~~~s~~~~~l~  305 (317)
T d1vyhc1         248 NWVRGVLFHSGGKFILSCADDKTLRVWDYKNKRCMKTLNA----------------------HEHFVTSLDFHKTAPYVV  305 (317)
T ss_dssp             SCEEEEEECSSSSCEEEEETTTEEEEECCTTSCCCEEEEC----------------------CSSCEEEEEECSSSSCEE
T ss_pred             CCEEEEEECCCCCEEEEEECCCeEEEEECCCCcEEEEEcC----------------------CCCCEEEEEEcCCCCEEE
Confidence                     7899999999999999999999999999987                      889999999999999999


Q ss_pred             EeeecCCCcEEEEe
Q 042146          245 SGALDNDRTMKIWT  258 (262)
Q Consensus       245 ~~~~d~d~~i~iw~  258 (262)
                      +|+  .||+|+|||
T Consensus       306 s~s--~Dg~i~iWd  317 (317)
T d1vyhc1         306 TGS--VDQTVKVWE  317 (317)
T ss_dssp             EEE--TTSEEEEEC
T ss_pred             EEe--CCCeEEEeC
Confidence            999  899999997

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

Probab=100.00  E-value=2.2e-39  Score=250.65  Aligned_cols=215  Identities=23%  Similarity=0.445  Sum_probs=178.3

Q ss_pred             ccccceecccCcCceEEEEEccCCCeEEEecCCCeEEEeecCCCCCCCCCCCCCCccccCCccccccce-----------
Q 042146           12 PYTLTQTLNGHLRAVSYVKFSHDGRLLTSSSAEKTLLTYSLSSISNFDSTPPSPLQKFTGHEQGISDLA-----------   80 (262)
Q Consensus        12 ~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~-----------   80 (262)
                      ..+..++|+||.++|++++|+|++++||+|+.||+|+|||+.+....        ..+..|...+..+.           
T Consensus        44 ~~~~~~tL~GH~~~I~~l~~s~~~~~l~sgs~Dg~v~iWd~~~~~~~--------~~~~~~~~~v~~v~~~~~~~~l~~~  115 (340)
T d1tbga_          44 QMRTRRTLRGHLAKIYAMHWGTDSRLLVSASQDGKLIIWDSYTTNKV--------HAIPLRSSWVMTCAYAPSGNYVACG  115 (340)
T ss_dssp             CCCEEEEECCCSSCEEEEEECTTSSEEEEEETTTEEEEEETTTTEEE--------EEEECSCSCEEEEEECTTSSEEEEE
T ss_pred             ceeeeEEECCCCCCEEEEEECCCCCEEEEEECCCceeeeecccceeE--------EEEecccccEEeeEeeccceeeeee
Confidence            34577889999999999999999999999999999999998764321        11112222111111           


Q ss_pred             ----eEEEEec---------------------------------------------CCCccceecccCCcceEEEEEeCC
Q 042146           81 ----TIRLWDV---------------------------------------------PTATSLKTLIGHTNYVFCINFNPQ  111 (262)
Q Consensus        81 ----~i~v~d~---------------------------------------------~~~~~~~~~~~~~~~v~~~~~~~~  111 (262)
                          .+.+|+.                                             ...........+...+....+.+.
T Consensus       116 ~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  195 (340)
T d1tbga_         116 GLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQIVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPD  195 (340)
T ss_dssp             ETTCCEEEEESSSSCSCCCEEEEECCCSSCEEEEEEEETTEEEEEETTTEEEEEETTTTEEEEEEECCSSCEEEEEECTT
T ss_pred             cccceeecccccccccccccceecccccccccccccccccccccccccccccccccccccccccccccceeEeeeccccc
Confidence                3344433                                             222222333345667888889999


Q ss_pred             CCEEEeecCCCeEEEEECCCCeeeeeeecCCCCeeeEEEccCCCEEEEEeCCCeEEEEeCCC------------------
Q 042146          112 SNRIVSDTFNETIRIWDIKTGKCLKVLPAHSDPVTAIDFNRDGTMIVTSSYDGLYRILDAST------------------  173 (262)
Q Consensus       112 ~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~d~~~------------------  173 (262)
                      +.++++|+.|+.|++||+++++++..+.+|..+|++++|+|++++|++++.||.|++||++.                  
T Consensus       196 ~~~~~~~~~d~~v~i~d~~~~~~~~~~~~h~~~i~~v~~~p~~~~l~s~s~d~~i~~~~~~~~~~~~~~~~~~~~~~i~~  275 (340)
T d1tbga_         196 TRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYSHDNIICGITS  275 (340)
T ss_dssp             SSEEEEEETTTEEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCTTCCSCEEE
T ss_pred             cceeEEeecCceEEEEECCCCcEEEEEeCCCCCeEEEEECCCCCEEEEEeCCCeEEEEeecccccccccccccccCceEE
Confidence            99999999999999999999999999999999999999999999999999999999999886                  


Q ss_pred             ----CCccEEEEEcCCCeEEEEecCCCceeeEEeccCCceeEEEEEEecCCCeeEEccccceEEEEEcCCCCeEEEeeec
Q 042146          174 ----PNGKFILVGTLDNTLRLWNYSTRKILKTYSGYTNSKYCISSTFSVTNGKYIVSHRDPVISVASHPAKNIIASGALD  249 (262)
Q Consensus       174 ----~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~d  249 (262)
                          +++++|++|+.||.|++||+.+++++..+.+                      |.++|++++|+|++++|++|+  
T Consensus       276 ~~~s~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~----------------------H~~~V~~l~~s~d~~~l~s~s--  331 (340)
T d1tbga_         276 VSFSKSGRLLLAGYDDFNCNVWDALKADRAGVLAG----------------------HDNRVSCLGVTDDGMAVATGS--  331 (340)
T ss_dssp             EEECSSSCEEEEEETTSCEEEEETTTCCEEEEECC----------------------CSSCEEEEEECTTSSCEEEEE--
T ss_pred             EEECCCCCEEEEEECCCEEEEEECCCCcEEEEEcC----------------------CCCCEEEEEEeCCCCEEEEEc--
Confidence                7889999999999999999999999999987                      889999999999999999999  


Q ss_pred             CCCcEEEEe
Q 042146          250 NDRTMKIWT  258 (262)
Q Consensus       250 ~d~~i~iw~  258 (262)
                      .||.|+|||
T Consensus       332 ~Dg~v~iWd  340 (340)
T d1tbga_         332 WDSFLKIWN  340 (340)
T ss_dssp             TTSCEEEEC
T ss_pred             cCCEEEEeC
Confidence            899999997

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.1e-38  Score=247.68  Aligned_cols=231  Identities=15%  Similarity=0.274  Sum_probs=189.1

Q ss_pred             CCCceeeeccc-----cc--ceecccCcCceEEEEEccCCCeEEEecCCCeEEEeecCCCCCCC--C--CCCCCCcc--c
Q 042146            3 SDRSLESFRPY-----TL--TQTLNGHLRAVSYVKFSHDGRLLTSSSAEKTLLTYSLSSISNFD--S--TPPSPLQK--F   69 (262)
Q Consensus         3 ~d~~i~~~~~~-----~~--~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~--~--~~~~~~~~--~   69 (262)
                      +||.|+.|+-.     ..  .....+|.+.|++++|+|++++|++|+.||.|++||+.......  .  ........  +
T Consensus        70 ~dg~V~iWd~~~~~~~~~~~~~~~~~h~~~I~~v~~s~dg~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~  149 (337)
T d1gxra_          70 GKGCVKVWDISHPGNKSPVSQLDCLNRDNYIRSCKLLPDGCTLIVGGEASTLSIWDLAAPTPRIKAELTSSAPACYALAI  149 (337)
T ss_dssp             CBSEEEEEETTSTTCCSCSEEEECSCTTSBEEEEEECTTSSEEEEEESSSEEEEEECCCC--EEEEEEECSSSCEEEEEE
T ss_pred             ECCEEEEEEccCCcccceeEEeeecCCCCcEEEEEEcCCCCEEEEeeccccccccccccccccccccccccccccccccc
Confidence            47888888521     12  22345799999999999999999999999999999986532110  0  00001111  1


Q ss_pred             cCCcccc---ccceeEEEEecCCCccceecccCCcceEEEEEeCCCCEEEeecCCCeEEEEECCCCeeeeeeecCCCCee
Q 042146           70 TGHEQGI---SDLATIRLWDVPTATSLKTLIGHTNYVFCINFNPQSNRIVSDTFNETIRIWDIKTGKCLKVLPAHSDPVT  146 (262)
Q Consensus        70 ~~~~~~v---~~~~~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~v~  146 (262)
                      ......+   .....+++|++.+++.......|...|.+++|++++..+++++.|+.|++||+++++.+..+. |..+|.
T Consensus       150 ~~~~~~l~s~~~d~~i~~~~~~~~~~~~~~~~~~~~v~~l~~s~~~~~~~~~~~d~~v~i~d~~~~~~~~~~~-~~~~i~  228 (337)
T d1gxra_         150 SPDSKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDISNDGTKLWTGGLDNTVRSWDLREGRQLQQHD-FTSQIF  228 (337)
T ss_dssp             CTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEE-CSSCEE
T ss_pred             cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccceeecccc-cccceE
Confidence            1111111   112279999999999988889999999999999999999999999999999999999888774 789999


Q ss_pred             eEEEccCCCEEEEEeCCCeEEEEeCCC-------------------CCccEEEEEcCCCeEEEEecCCCceeeEEeccCC
Q 042146          147 AIDFNRDGTMIVTSSYDGLYRILDAST-------------------PNGKFILVGTLDNTLRLWNYSTRKILKTYSGYTN  207 (262)
Q Consensus       147 ~~~~~~~~~~l~~~~~dg~i~~~d~~~-------------------~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~  207 (262)
                      +++|+|++++|++++.|+.+++||++.                   |++++|++|+.||.|++||+.+++.+..+.    
T Consensus       229 ~l~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~i~~v~~s~~g~~l~s~s~Dg~i~iwd~~~~~~~~~~~----  304 (337)
T d1gxra_         229 SLGYCPTGEWLAVGMESSNVEVLHVNKPDKYQLHLHESCVLSLKFAYCGKWFVSTGKDNLLNAWRTPYGASIFQSK----  304 (337)
T ss_dssp             EEEECTTSSEEEEEETTSCEEEEETTSSCEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEE----
T ss_pred             EEEEcccccccceeccccccccccccccccccccccccccceEEECCCCCEEEEEeCCCeEEEEECCCCCEEEEcc----
Confidence            999999999999999999999999886                   789999999999999999999999887765    


Q ss_pred             ceeEEEEEEecCCCeeEEccccceEEEEEcCCCCeEEEeeecCCCcEEEEee
Q 042146          208 SKYCISSTFSVTNGKYIVSHRDPVISVASHPAKNIIASGALDNDRTMKIWTQ  259 (262)
Q Consensus       208 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~d~d~~i~iw~~  259 (262)
                                         |...|.+++|+|++++|++|+  .||+|+|||+
T Consensus       305 -------------------~~~~v~~~~~s~d~~~l~t~s--~D~~I~vWdl  335 (337)
T d1gxra_         305 -------------------ESSSVLSCDISVDDKYIVTGS--GDKKATVYEV  335 (337)
T ss_dssp             -------------------CSSCEEEEEECTTSCEEEEEE--TTSCEEEEEE
T ss_pred             -------------------CCCCEEEEEEeCCCCEEEEEe--CCCeEEEEEE
Confidence                               788999999999999999999  8999999997

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=1.9e-36  Score=238.77  Aligned_cols=209  Identities=28%  Similarity=0.480  Sum_probs=169.4

Q ss_pred             cCcCceEEEEEccCCCeEEEecCCCeEEEeecCCCCCCCCCCCCCCccccCCccccc---------------cceeEEEE
Q 042146           21 GHLRAVSYVKFSHDGRLLTSSSAEKTLLTYSLSSISNFDSTPPSPLQKFTGHEQGIS---------------DLATIRLW   85 (262)
Q Consensus        21 ~h~~~v~~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~---------------~~~~i~v~   85 (262)
                      .|...|++++|+|++++|++|+.||.|++|+.......        ....+|...+.               ..+.+++|
T Consensus       119 ~~~~~V~~l~~s~~~~~l~s~~~dg~v~i~~~~~~~~~--------~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~i~~~  190 (388)
T d1erja_         119 SSDLYIRSVCFSPDGKFLATGAEDRLIRIWDIENRKIV--------MILQGHEQDIYSLDYFPSGDKLVSGSGDRTVRIW  190 (388)
T ss_dssp             CCCCBEEEEEECTTSSEEEEEETTSCEEEEETTTTEEE--------EEECCCSSCEEEEEECTTSSEEEEEETTSEEEEE
T ss_pred             CCCCCEEEEEECCCCCcceecccccccccccccccccc--------cccccccccccccccccccccccccccceeeeee
Confidence            57778999999999999999999999999987654321        11222222221               22389999


Q ss_pred             ecCCCccceecccCCcceEEEEEeCCCCEEEeecCCCeEEEEECCCCeeeeee-------ecCCCCeeeEEEccCCCEEE
Q 042146           86 DVPTATSLKTLIGHTNYVFCINFNPQSNRIVSDTFNETIRIWDIKTGKCLKVL-------PAHSDPVTAIDFNRDGTMIV  158 (262)
Q Consensus        86 d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~-------~~~~~~v~~~~~~~~~~~l~  158 (262)
                      |..+.........+...+....+.+++++|++|+.||.|++||.+++.....+       .+|..+|.+++|+|++++|+
T Consensus       191 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~  270 (388)
T d1erja_         191 DLRTGQCSLTLSIEDGVTTVAVSPGDGKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVV  270 (388)
T ss_dssp             ETTTTEEEEEEECSSCEEEEEECSTTCCEEEEEETTSCEEEEETTTCCEEEEEC------CCCSSCEEEEEECTTSSEEE
T ss_pred             eccccccccccccccccccccccCCCCCeEEEEcCCCeEEEeecccCccceeeccccccccCCCCCEEEEEECCCCCEEE
Confidence            99988777766655554444444448899999999999999999988766554       35788999999999999999


Q ss_pred             EEeCCCeEEEEeCCC--------------------------------CCccEEEEEcCCCeEEEEecCCCceeeEEeccC
Q 042146          159 TSSYDGLYRILDAST--------------------------------PNGKFILVGTLDNTLRLWNYSTRKILKTYSGYT  206 (262)
Q Consensus       159 ~~~~dg~i~~~d~~~--------------------------------~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~  206 (262)
                      +++.||.|++||++.                                +++++|++|+.||.|++||+++++++..+++  
T Consensus       271 s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~sg~~dg~i~vwd~~~~~~~~~l~~--  348 (388)
T d1erja_         271 SGSLDRSVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQNDEYILSGSKDRGVLFWDKKSGNPLLMLQG--  348 (388)
T ss_dssp             EEETTSEEEEEEC---------------CEEEEEECCSSCEEEEEECGGGCEEEEEETTSEEEEEETTTCCEEEEEEC--
T ss_pred             EEECCCcEEEEeccCCccccccccccccceeeecccccceEEEEEECCCCCEEEEEeCCCEEEEEECCCCcEEEEEeC--
Confidence            999999999999865                                5789999999999999999999999999998  


Q ss_pred             CceeEEEEEEecCCCeeEEccccceEEEE------EcCCCCeEEEeeecCCCcEEEEeecc
Q 042146          207 NSKYCISSTFSVTNGKYIVSHRDPVISVA------SHPAKNIIASGALDNDRTMKIWTQEK  261 (262)
Q Consensus       207 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~------~~p~~~~l~~~~~d~d~~i~iw~~~~  261 (262)
                                          |.+.|.+++      |+|++.+|++|+  .||+|+||++++
T Consensus       349 --------------------H~~~V~~~~~~~~~~~spd~~~l~s~s--~Dg~I~iW~~~k  387 (388)
T d1erja_         349 --------------------HRNSVISVAVANGSSLGPEYNVFATGS--GDCKARIWKYKK  387 (388)
T ss_dssp             --------------------CSSCEEEEEECSSCTTCTTCEEEEEEE--TTSEEEEEEEEE
T ss_pred             --------------------CCCCEEEEEEecCcccCCCCCEEEEEe--CCCEEEEEeeee
Confidence                                777777776      578999999999  899999999975

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=5.6e-36  Score=232.26  Aligned_cols=216  Identities=19%  Similarity=0.323  Sum_probs=179.7

Q ss_pred             ceecccCcCceEEEEEccCCCeEEEecCCCeEEEeecCCCCCCCCCCCCCCccccCCccccc---------------cce
Q 042146           16 TQTLNGHLRAVSYVKFSHDGRLLTSSSAEKTLLTYSLSSISNFDSTPPSPLQKFTGHEQGIS---------------DLA   80 (262)
Q Consensus        16 ~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~---------------~~~   80 (262)
                      ++.+ .|..+|.|++|+|++++|++|+ ||.|+|||+.........   ......+|...|.               ..+
T Consensus        45 ~~~~-~H~~~V~~v~fs~~g~~latg~-dg~V~iWd~~~~~~~~~~---~~~~~~~h~~~I~~v~~s~dg~~l~s~~~dg  119 (337)
T d1gxra_          45 INTL-NHGEVVCAVTISNPTRHVYTGG-KGCVKVWDISHPGNKSPV---SQLDCLNRDNYIRSCKLLPDGCTLIVGGEAS  119 (337)
T ss_dssp             EEEE-CCSSCCCEEEECSSSSEEEEEC-BSEEEEEETTSTTCCSCS---EEEECSCTTSBEEEEEECTTSSEEEEEESSS
T ss_pred             EEEC-CCCCcEEEEEECCCCCEEEEEE-CCEEEEEEccCCccccee---EEeeecCCCCcEEEEEEcCCCCEEEEeeccc
Confidence            4444 6999999999999999999998 899999998764322111   0111112222222               223


Q ss_pred             eEEEEecCCC--ccceecccCCcceEEEEEeCCCCEEEeecCCCeEEEEECCCCeeeeeeecCCCCeeeEEEccCCCEEE
Q 042146           81 TIRLWDVPTA--TSLKTLIGHTNYVFCINFNPQSNRIVSDTFNETIRIWDIKTGKCLKVLPAHSDPVTAIDFNRDGTMIV  158 (262)
Q Consensus        81 ~i~v~d~~~~--~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~  158 (262)
                      .|++||+...  +....+..|...+.+++|+|++.++++++.|+.|++|+++++++......|...|.+++|++++..++
T Consensus       120 ~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~i~~~~~~~~~~~~~~~~~~~~v~~l~~s~~~~~~~  199 (337)
T d1gxra_         120 TLSIWDLAAPTPRIKAELTSSAPACYALAISPDSKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDISNDGTKLW  199 (337)
T ss_dssp             EEEEEECCCC--EEEEEEECSSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEE
T ss_pred             cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence            8999998754  34566778999999999999999999999999999999999999999989999999999999999999


Q ss_pred             EEeCCCeEEEEeCCC-------------------CCccEEEEEcCCCeEEEEecCCCceeeEEeccCCceeEEEEEEecC
Q 042146          159 TSSYDGLYRILDAST-------------------PNGKFILVGTLDNTLRLWNYSTRKILKTYSGYTNSKYCISSTFSVT  219 (262)
Q Consensus       159 ~~~~dg~i~~~d~~~-------------------~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~  219 (262)
                      +++.|+.+++||++.                   +++++|++|+.|+.+++||+++++......                
T Consensus       200 ~~~~d~~v~i~d~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~----------------  263 (337)
T d1gxra_         200 TGGLDNTVRSWDLREGRQLQQHDFTSQIFSLGYCPTGEWLAVGMESSNVEVLHVNKPDKYQLHL----------------  263 (337)
T ss_dssp             EEETTSEEEEEETTTTEEEEEEECSSCEEEEEECTTSSEEEEEETTSCEEEEETTSSCEEEECC----------------
T ss_pred             cccccccccccccccceeecccccccceEEEEEcccccccceeccccccccccccccccccccc----------------
Confidence            999999999999876                   788999999999999999999887654332                


Q ss_pred             CCeeEEccccceEEEEEcCCCCeEEEeeecCCCcEEEEeecc
Q 042146          220 NGKYIVSHRDPVISVASHPAKNIIASGALDNDRTMKIWTQEK  261 (262)
Q Consensus       220 ~~~~~~~~~~~v~~~~~~p~~~~l~~~~~d~d~~i~iw~~~~  261 (262)
                             |...|++++|+|++++|++++  .||.|++|++..
T Consensus       264 -------~~~~i~~v~~s~~g~~l~s~s--~Dg~i~iwd~~~  296 (337)
T d1gxra_         264 -------HESCVLSLKFAYCGKWFVSTG--KDNLLNAWRTPY  296 (337)
T ss_dssp             -------CSSCEEEEEECTTSSEEEEEE--TTSEEEEEETTT
T ss_pred             -------cccccceEEECCCCCEEEEEe--CCCeEEEEECCC
Confidence                   889999999999999999999  899999999864

>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=4.9e-35  Score=225.85  Aligned_cols=220  Identities=24%  Similarity=0.457  Sum_probs=173.9

Q ss_pred             cccccceecccCcCceEEEEEccCCCeEEEecCCCeEEEeecCCCCCCCCCCCCCCccccCCccccccce----------
Q 042146           11 RPYTLTQTLNGHLRAVSYVKFSHDGRLLTSSSAEKTLLTYSLSSISNFDSTPPSPLQKFTGHEQGISDLA----------   80 (262)
Q Consensus        11 ~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~----------   80 (262)
                      .++++.+.+++|+++|.+ +++++|++||||+.||+|+|||+.+.+...        .+.+|...+..+.          
T Consensus         4 ~~~~~~~~l~GH~~~V~s-~~~~~g~~l~sgs~Dg~i~vWd~~~~~~~~--------~~~~h~~~V~~v~~~~~~l~s~s   74 (342)
T d2ovrb2           4 GELKSPKVLKGHDDHVIT-CLQFCGNRIVSGSDDNTLKVWSAVTGKCLR--------TLVGHTGGVWSSQMRDNIIISGS   74 (342)
T ss_dssp             SCCCCCEEEECSTTSCEE-EEEEETTEEEEEETTSCEEEEETTTCCEEE--------ECCCCSSCEEEEEEETTEEEEEE
T ss_pred             CCCCcCEEECCcCCceEE-EEEECCCEEEEEeCCCeEEEEECCCCCEEE--------EEeCCCCCEEEEEeCCCccccce
Confidence            466788899999999865 366789999999999999999987643211        1111111111100          


Q ss_pred             --------------------------------------------------------------------------------
Q 042146           81 --------------------------------------------------------------------------------   80 (262)
Q Consensus        81 --------------------------------------------------------------------------------   80 (262)
                                                                                                      
T Consensus        75 ~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  154 (342)
T d2ovrb2          75 TDRTLKVWNAETGECIHTLYGHTSTVRCMHLHEKRVVSGSRDATLRVWDIETGQCLHVLMGHVAAVRCVQYDGRRVVSGA  154 (342)
T ss_dssp             TTSCEEEEETTTTEEEEEECCCSSCEEEEEEETTEEEEEETTSEEEEEESSSCCEEEEEECCSSCEEEEEECSSCEEEEE
T ss_pred             ecccccccccccccceecccccceeEeeeecccccccccccceeEEEeecccccceeeeecccccceeeccccceeeeec
Confidence                                                                                            


Q ss_pred             ---eEEEEecCCCccceecccCCcceEEEEEeCCCCEEEeecCCCeEEEEECCCCeeeeeeecCCCCeeeEEEccCCCEE
Q 042146           81 ---TIRLWDVPTATSLKTLIGHTNYVFCINFNPQSNRIVSDTFNETIRIWDIKTGKCLKVLPAHSDPVTAIDFNRDGTMI  157 (262)
Q Consensus        81 ---~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l  157 (262)
                         .+++||......+..+.+|...+..+  .+++.++++|+.||.|++||++.++++..+..|...+.++.++  +++|
T Consensus       155 ~d~~i~~~d~~~~~~~~~~~~~~~~~~~~--~~~~~~l~s~~~dg~i~~~d~~~~~~~~~~~~~~~~v~~~~~~--~~~l  230 (342)
T d2ovrb2         155 YDFMVKVWDPETETCLHTLQGHTNRVYSL--QFDGIHVVSGSLDTSIRVWDVETGNCIHTLTGHQSLTSGMELK--DNIL  230 (342)
T ss_dssp             TTSCEEEEEGGGTEEEEEECCCSSCEEEE--EECSSEEEEEETTSCEEEEETTTCCEEEEECCCCSCEEEEEEE--TTEE
T ss_pred             CCCeEEEeecccceeeEEEcCcccccccc--cCCCCEEEEEeCCCeEEEeecccceeeeEecccccceeEEecC--CCEE
Confidence               56677766666666677776666554  4468899999999999999999999999999999999888776  5699


Q ss_pred             EEEeCCCeEEEEeCCC---------------------CCccEEEEEcCCCeEEEEecCCCceeeEEeccCCceeEEEEEE
Q 042146          158 VTSSYDGLYRILDAST---------------------PNGKFILVGTLDNTLRLWNYSTRKILKTYSGYTNSKYCISSTF  216 (262)
Q Consensus       158 ~~~~~dg~i~~~d~~~---------------------~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~  216 (262)
                      ++++.|+.|++||+..                     .+++++++|+.||.|++||++++++++.+......        
T Consensus       231 ~s~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~s~Dg~i~iwd~~tg~~i~~~~~~~~~--------  302 (342)
T d2ovrb2         231 VSGNADSTVKIWDIKTGQCLQTLQGPNKHQSAVTCLQFNKNFVITSSDDGTVKLWDLKTGEFIRNLVTLESG--------  302 (342)
T ss_dssp             EEEETTSCEEEEETTTCCEEEEECSTTSCSSCEEEEEECSSEEEEEETTSEEEEEETTTCCEEEEEEECTTG--------
T ss_pred             EEEcCCCEEEEEecccccccccccccceeeeceeecccCCCeeEEEcCCCEEEEEECCCCCEEEEEecccCC--------
Confidence            9999999999999876                     46789999999999999999999999887642211        


Q ss_pred             ecCCCeeEEccccceEEEEEcCCCCeEEEeeecCCCc----EEEEeeccC
Q 042146          217 SVTNGKYIVSHRDPVISVASHPAKNIIASGALDNDRT----MKIWTQEKE  262 (262)
Q Consensus       217 ~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~d~d~~----i~iw~~~~~  262 (262)
                               +|...|++++|+|++.+|++|+  .||+    |++||++.+
T Consensus       303 ---------~~~~~v~~v~~s~~~~~la~g~--~dGt~~~~l~~~Df~~~  341 (342)
T d2ovrb2         303 ---------GSGGVVWRIRASNTKLVCAVGS--RNGTEETKLLVLDFDVD  341 (342)
T ss_dssp             ---------GGTCEEEEEEECSSEEEEEEEC--SSSSSCCEEEEEECCCC
T ss_pred             ---------CCCCCEEEEEECCCCCEEEEEe--CCCCCeeEEEEEeCCCC
Confidence                     1778899999999999999998  7785    999999754

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

Probab=100.00  E-value=6.5e-35  Score=229.12  Aligned_cols=201  Identities=15%  Similarity=0.261  Sum_probs=170.2

Q ss_pred             CCCCceeeecc----cccceecccCcCceEEEEEccCCCeEEEecCCCeEEEeecCCCCCCCCCCCCCCccccCCccccc
Q 042146            2 SSDRSLESFRP----YTLTQTLNGHLRAVSYVKFSHDGRLLTSSSAEKTLLTYSLSSISNFDSTPPSPLQKFTGHEQGIS   77 (262)
Q Consensus         2 s~d~~i~~~~~----~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~   77 (262)
                      +.|+.|..|+.    +..+..+++|.++|++++|+|++++|++|+.|++|++||+..                       
T Consensus        26 ~~~~~i~iw~~~~~~~~~~~~l~gH~~~V~~l~fsp~~~~l~s~s~D~~i~vWd~~~-----------------------   82 (371)
T d1k8kc_          26 PNNHEVHIYEKSGNKWVQVHELKEHNGQVTGVDWAPDSNRIVTCGTDRNAYVWTLKG-----------------------   82 (371)
T ss_dssp             CSSSEEEEEEEETTEEEEEEEEECCSSCEEEEEEETTTTEEEEEETTSCEEEEEEET-----------------------
T ss_pred             eCCCEEEEEECCCCCEEEEEEecCCCCCEEEEEECCCCCEEEEEECCCeEEEEeecc-----------------------
Confidence            35788888863    246778899999999999999999999999999999997642                       


Q ss_pred             cceeEEEEecCCCccceecccCCcceEEEEEeCCCCEEEeecCCCeEEEEECCCCee----eeeeecCCCCeeeEEEccC
Q 042146           78 DLATIRLWDVPTATSLKTLIGHTNYVFCINFNPQSNRIVSDTFNETIRIWDIKTGKC----LKVLPAHSDPVTAIDFNRD  153 (262)
Q Consensus        78 ~~~~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~----~~~~~~~~~~v~~~~~~~~  153 (262)
                                ...+....+.+|...|.+++|+|+++.|++++.|+.|++|++.....    ......|...|.+++|+|+
T Consensus        83 ----------~~~~~~~~~~~~~~~v~~i~~~p~~~~l~~~s~d~~i~i~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~  152 (371)
T d1k8kc_          83 ----------RTWKPTLVILRINRAARCVRWAPNEKKFAVGSGSRVISICYFEQENDWWVCKHIKKPIRSTVLSLDWHPN  152 (371)
T ss_dssp             ----------TEEEEEEECCCCSSCEEEEEECTTSSEEEEEETTSSEEEEEEETTTTEEEEEEECTTCCSCEEEEEECTT
T ss_pred             ----------cccccccccccccccccccccccccccceeecccCcceeeeeeccccccccccccccccccccccccccc
Confidence                      11223445567889999999999999999999999999999876542    3334568899999999999


Q ss_pred             CCEEEEEeCCCeEEEEeCCC--------------------------------------CCccEEEEEcCCCeEEEEecCC
Q 042146          154 GTMIVTSSYDGLYRILDAST--------------------------------------PNGKFILVGTLDNTLRLWNYST  195 (262)
Q Consensus       154 ~~~l~~~~~dg~i~~~d~~~--------------------------------------~~~~~l~~~~~dg~i~i~d~~~  195 (262)
                      +++|++|+.|+++++||...                                      |++++|++++.|+.|++||+.+
T Consensus       153 ~~~l~s~s~D~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~s~~~d~~i~iwd~~~  232 (371)
T d1k8kc_         153 SVLLAAGSCDFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCGWVHGVCFSANGSRVAWVSHDSTVCLADADK  232 (371)
T ss_dssp             SSEEEEEETTSCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECCCCSSCEEEEEECSSSSEEEEEETTTEEEEEEGGG
T ss_pred             ccceeccccCcEEEEEeeccCccccccccccccccccceeeeeeccCccCcEEEEEeecccccccccccCCcceEEeeec
Confidence            99999999999999999753                                      6889999999999999999999


Q ss_pred             CceeeEEeccCCceeEEEEEEecCCCeeEEccccceEEEEEcCCCCeEEEeeecCCCcEEEEeec
Q 042146          196 RKILKTYSGYTNSKYCISSTFSVTNGKYIVSHRDPVISVASHPAKNIIASGALDNDRTMKIWTQE  260 (262)
Q Consensus       196 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~d~d~~i~iw~~~  260 (262)
                      ++.+..+..                      |..+|.+++|+|++++|++|   .|+.+++|..+
T Consensus       233 ~~~~~~~~~----------------------~~~~v~s~~fs~d~~~la~g---~d~~~~~~~~~  272 (371)
T d1k8kc_         233 KMAVATLAS----------------------ETLPLLAVTFITESSLVAAG---HDCFPVLFTYD  272 (371)
T ss_dssp             TTEEEEEEC----------------------SSCCEEEEEEEETTEEEEEE---TTSSCEEEEEE
T ss_pred             ccceeeeec----------------------ccccceeeeecCCCCEEEEE---cCCceEEEEee
Confidence            999988887                      88899999999999988876   57888887764

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=100.00  E-value=1.8e-34  Score=219.79  Aligned_cols=225  Identities=16%  Similarity=0.250  Sum_probs=164.0

Q ss_pred             cccceecccCcCceEEEEEccCCCeEEEecCCCeEEEeecCCCCCCCCCC---CCCCccccCC-cccc---ccceeEEEE
Q 042146           13 YTLTQTLNGHLRAVSYVKFSHDGRLLTSSSAEKTLLTYSLSSISNFDSTP---PSPLQKFTGH-EQGI---SDLATIRLW   85 (262)
Q Consensus        13 ~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~---~~~~~~~~~~-~~~v---~~~~~i~v~   85 (262)
                      .++.++++||.++|++++|+|++++|++|+.||+|++||+++........   ...+..+... ...+   .....+++|
T Consensus         2 g~~~~~~~GH~~~V~~l~~s~dg~~l~s~s~Dg~v~vWd~~~~~~~~~~~~~h~~~v~~v~~~~~g~~~~~~~d~~v~~~   81 (299)
T d1nr0a2           2 GSIDQVRYGHNKAITALSSSADGKTLFSADAEGHINSWDISTGISNRVFPDVHATMITGIKTTSKGDLFTVSWDDHLKVV   81 (299)
T ss_dssp             TEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEECSSCSCSSCEEEEEECTTSCEEEEETTTEEEEE
T ss_pred             CccceEcCCCCCCcEEEEECCCCCEEEEEcCCCeEEEEECCCCcEEEEEcCCCCCcEEEEEeeccceeecccceeeEEEe
Confidence            35678999999999999999999999999999999999987643222111   1111111100 1111   112255566


Q ss_pred             ecCCCcc-----------------------------------------ceecccCCcceEEEEEeCCCCEEEeecCCCeE
Q 042146           86 DVPTATS-----------------------------------------LKTLIGHTNYVFCINFNPQSNRIVSDTFNETI  124 (262)
Q Consensus        86 d~~~~~~-----------------------------------------~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i  124 (262)
                      +......                                         ... ......+.+++|+|+++++++|+.||.|
T Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~~~~~~~~i~~~~~~~~~~-~~~~~~~~~~~~s~~~~~l~~g~~dg~i  160 (299)
T d1nr0a2          82 PAGGSGVDSSKAVANKLSSQPLGLAVSADGDIAVAACYKHIAIYSHGKLTE-VPISYNSSCVALSNDKQFVAVGGQDSKV  160 (299)
T ss_dssp             CSSSSSSCTTSCCEEECSSCEEEEEECTTSSCEEEEESSEEEEEETTEEEE-EECSSCEEEEEECTTSCEEEEEETTSEE
T ss_pred             ccCCccccccccccccccccccccccccccccccccccccccccccccccc-cccccccccccccccccccccccccccc
Confidence            5432110                                         000 0123457889999999999999999999


Q ss_pred             EEEECCCCeeee-eeecCCCCeeeEEEccCCCEEEEEeCCCeEEEEeCCC-----------------------CCccEEE
Q 042146          125 RIWDIKTGKCLK-VLPAHSDPVTAIDFNRDGTMIVTSSYDGLYRILDAST-----------------------PNGKFIL  180 (262)
Q Consensus       125 ~vwd~~~~~~~~-~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~d~~~-----------------------~~~~~l~  180 (262)
                      ++||+++++... ....|..+|++++|+|++++|++++.|+.|++||+..                       |++++|+
T Consensus       161 ~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~  240 (299)
T d1nr0a2         161 HVYKLSGASVSEVKTIVHPAEITSVAFSNNGAFLVATDQSRKVIPYSVANNFELAHTNSWTFHTAKVACVSWSPDNVRLA  240 (299)
T ss_dssp             EEEEEETTEEEEEEEEECSSCEEEEEECTTSSEEEEEETTSCEEEEEGGGTTEESCCCCCCCCSSCEEEEEECTTSSEEE
T ss_pred             cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccceE
Confidence            999998876543 3446889999999999999999999999999999754                       7899999


Q ss_pred             EEcCCCeEEEEecCCCceeeEEeccCCceeEEEEEEecCCCeeEEccccceEEEEEcCCCCeEEEeeecCCCcEEEEeec
Q 042146          181 VGTLDNTLRLWNYSTRKILKTYSGYTNSKYCISSTFSVTNGKYIVSHRDPVISVASHPAKNIIASGALDNDRTMKIWTQE  260 (262)
Q Consensus       181 ~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~d~d~~i~iw~~~  260 (262)
                      +|+.||.|++||++++.....+.....                   +...+.++.| |++.+|++++  .|++|++||+.
T Consensus       241 sgs~dg~i~iwd~~~~~~~~~~~~~~~-------------------~~~~v~~~~~-~~~~~l~s~s--~D~~i~iWdl~  298 (299)
T d1nr0a2         241 TGSLDNSVIVWNMNKPSDHPIIIKGAH-------------------AMSSVNSVIW-LNETTIVSAG--QDSNIKFWNVP  298 (299)
T ss_dssp             EEETTSCEEEEETTCTTSCCEEETTSS-------------------TTSCEEEEEE-EETTEEEEEE--TTSCEEEEECC
T ss_pred             EEcCCCEEEEEECCCCCcceEEEecCC-------------------CCCcEEEEEE-CCCCEEEEEe--CCCEEEEEecc
Confidence            999999999999998765444332211                   4456666655 5678899999  89999999984

>d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=1.1e-34  Score=223.83  Aligned_cols=225  Identities=16%  Similarity=0.186  Sum_probs=169.4

Q ss_pred             ccceecccCc-CceEEEEEcc--CCCeEEEecCCCeEEEeecCCCCCCCCCCCCCCccccCCcccccc------------
Q 042146           14 TLTQTLNGHL-RAVSYVKFSH--DGRLLTSSSAEKTLLTYSLSSISNFDSTPPSPLQKFTGHEQGISD------------   78 (262)
Q Consensus        14 ~~~~~~~~h~-~~v~~~~~~~--~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~------------   78 (262)
                      .....+.+|. ..|++++|+|  ++++|++|+.||+|+|||+................+..+...+..            
T Consensus        53 ~~~~~~~gh~~~~v~~v~fsP~~~g~~lasgs~Dg~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~  132 (325)
T d1pgua1          53 PPVVQFTGHGSSVVTTVKFSPIKGSQYLCSGDESGKVIVWGWTFDKESNSVEVNVKSEFQVLAGPISDISWDFEGRRLCV  132 (325)
T ss_dssp             CSEEEECTTTTSCEEEEEECSSTTCCEEEEEETTSEEEEEEEEEEGGGTEEEEEEEEEEECCSSCEEEEEECTTSSEEEE
T ss_pred             cceEEEeCCCCCCEEEEEEeeCCCCCEEEEEeCCCCEEEeeecCCcceeeeecccccccccccCcEEEEEECCCCCccce
Confidence            3455677774 6799999998  568999999999999999865332211111000111111111111            


Q ss_pred             -----ceeEEEEecCCCccceecccCCcceEEEEEeCCCCE-EEeecCCCeEEEEECCCCeeeeee---ecCCCCeeeEE
Q 042146           79 -----LATIRLWDVPTATSLKTLIGHTNYVFCINFNPQSNR-IVSDTFNETIRIWDIKTGKCLKVL---PAHSDPVTAID  149 (262)
Q Consensus        79 -----~~~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~-l~~~~~dg~i~vwd~~~~~~~~~~---~~~~~~v~~~~  149 (262)
                           ...+.+|+.++++.+..+.+|...|.+++|+|++++ +++++.|+.|++||.+..+....+   ..|...|.+++
T Consensus       133 ~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~d~~v~~~d~~~~~~~~~~~~~~~~~~~v~~v~  212 (325)
T d1pgua1         133 VGEGRDNFGVFISWDSGNSLGEVSGHSQRINACHLKQSRPMRSMTVGDDGSVVFYQGPPFKFSASDRTHHKQGSFVRDVE  212 (325)
T ss_dssp             EECCSSCSEEEEETTTCCEEEECCSCSSCEEEEEECSSSSCEEEEEETTTEEEEEETTTBEEEEEECSSSCTTCCEEEEE
T ss_pred             eeccccceEEEEeecccccceeeeecccccccccccccccceEEEeecccccccccccccccceecccccCCCCccEEee
Confidence                 125889999999999999999999999999998775 678999999999999887765554   45677899999


Q ss_pred             EccC-CCEEEEEeCCCeEEEEeCCC-----------------------CCccEEEEEcCCCeEEEEecCCCceeeEEecc
Q 042146          150 FNRD-GTMIVTSSYDGLYRILDAST-----------------------PNGKFILVGTLDNTLRLWNYSTRKILKTYSGY  205 (262)
Q Consensus       150 ~~~~-~~~l~~~~~dg~i~~~d~~~-----------------------~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~  205 (262)
                      |+|+ +.+|++++.|+.|++||+++                       +++++|++++.|+.|+|||+++++++..+..+
T Consensus       213 ~~pd~~~~l~s~~~d~~i~iwd~~~~~~~~~l~~~~~~v~~~~~s~~~~dg~~l~s~s~D~~i~iwd~~~~~~~~~~~~~  292 (325)
T d1pgua1         213 FSPDSGEFVITVGSDRKISCFDGKSGEFLKYIEDDQEPVQGGIFALSWLDSQKFATVGADATIRVWDVTTSKCVQKWTLD  292 (325)
T ss_dssp             ECSTTCCEEEEEETTCCEEEEETTTCCEEEECCBTTBCCCSCEEEEEESSSSEEEEEETTSEEEEEETTTTEEEEEEECC
T ss_pred             eccccceeccccccccceeeeeeccccccccccccccccccceeeeeccCCCEEEEEeCCCeEEEEECCCCCEEEEEEec
Confidence            9996 67899999999999999876                       67889999999999999999999999988764


Q ss_pred             CCceeEEEEEEecCCCeeEEccccceEEEEEcCCCCeEEEeeecCCCcEEEEee
Q 042146          206 TNSKYCISSTFSVTNGKYIVSHRDPVISVASHPAKNIIASGALDNDRTMKIWTQ  259 (262)
Q Consensus       206 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~d~d~~i~iw~~  259 (262)
                      ...                  ......++.+.++ .+|++++  .||.|++||+
T Consensus       293 ~~~------------------~~~~~~~~~~~~~-~~l~s~s--~dg~i~vwdl  325 (325)
T d1pgua1         293 KQQ------------------LGNQQVGVVATGN-GRIISLS--LDGTLNFYEL  325 (325)
T ss_dssp             TTC------------------GGGCEEEEEEEET-TEEEEEE--TTSCEEEEET
T ss_pred             CCc------------------ccCeEEEEEECCC-CEEEEEE--CCCEEEEEEC
Confidence            422                  1122234444443 4688888  8999999996

>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=100.00  E-value=5.4e-34  Score=218.59  Aligned_cols=215  Identities=20%  Similarity=0.310  Sum_probs=176.4

Q ss_pred             cCcCceEEEEEccCCCeEEEecCCCeEEEeecCCCCCCCCCCCCCCccccCCcccccc---------------ceeEEEE
Q 042146           21 GHLRAVSYVKFSHDGRLLTSSSAEKTLLTYSLSSISNFDSTPPSPLQKFTGHEQGISD---------------LATIRLW   85 (262)
Q Consensus        21 ~h~~~v~~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~---------------~~~i~v~   85 (262)
                      .+.+.+.+++++|+|+.|+.++ ++.|.+|++++.....        .+.+|...+.+               .+.|++|
T Consensus        15 ~~r~~~~~~a~~~~g~~l~~~~-~~~v~i~~~~~~~~~~--------~~~~H~~~v~~~~~sp~g~~latg~~dg~i~iw   85 (311)
T d1nr0a1          15 TARGTAVVLGNTPAGDKIQYCN-GTSVYTVPVGSLTDTE--------IYTEHSHQTTVAKTSPSGYYCASGDVHGNVRIW   85 (311)
T ss_dssp             CCTTCCCCCEECTTSSEEEEEE-TTEEEEEETTCSSCCE--------EECCCSSCEEEEEECTTSSEEEEEETTSEEEEE
T ss_pred             CCCCCeEEEEEcCCCCEEEEEe-CCEEEEEECCCCceeE--------EEcCCCCCEEEEEEeCCCCeEeccccCceEeee
Confidence            3455677899999999999885 6679999987643322        22333333322               2399999


Q ss_pred             ecCCCccc--eecccCCcceEEEEEeCCCCEEEeecC--CCeEEEEECCCCeeeeeeecCCCCeeeEEEccCCCE-EEEE
Q 042146           86 DVPTATSL--KTLIGHTNYVFCINFNPQSNRIVSDTF--NETIRIWDIKTGKCLKVLPAHSDPVTAIDFNRDGTM-IVTS  160 (262)
Q Consensus        86 d~~~~~~~--~~~~~~~~~v~~~~~~~~~~~l~~~~~--dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~-l~~~  160 (262)
                      |+.+++..  ..+..|..+|.+++|+|+++++++++.  +..+++|++++++....+.+|...|++++|+|++++ |++|
T Consensus        86 d~~~~~~~~~~~~~~~~~~v~~v~~s~d~~~l~~~~~~~~~~~~v~~~~~~~~~~~l~~h~~~v~~v~~~~~~~~~l~sg  165 (311)
T d1nr0a1          86 DTTQTTHILKTTIPVFSGPVKDISWDSESKRIAAVGEGRERFGHVFLFDTGTSNGNLTGQARAMNSVDFKPSRPFRIISG  165 (311)
T ss_dssp             ESSSTTCCEEEEEECSSSCEEEEEECTTSCEEEEEECCSSCSEEEEETTTCCBCBCCCCCSSCEEEEEECSSSSCEEEEE
T ss_pred             eeeccccccccccccccCccccccccccccccccccccccccccccccccccccccccccccccccccccccceeeeccc
Confidence            99887654  457789999999999999999998875  456999999999999999999999999999999885 8889


Q ss_pred             eCCCeEEEEeCCC--------------------CCccEEEEEcCCCeEEEEecCCCceeeEEeccCCceeEEEEEEecCC
Q 042146          161 SYDGLYRILDAST--------------------PNGKFILVGTLDNTLRLWNYSTRKILKTYSGYTNSKYCISSTFSVTN  220 (262)
Q Consensus       161 ~~dg~i~~~d~~~--------------------~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~  220 (262)
                      +.|+.|++||++.                    |+++++++++.|+.|++||+++++.+..+......            
T Consensus       166 s~d~~i~i~d~~~~~~~~~~~~~~~~i~~v~~~p~~~~l~~~~~d~~v~~~d~~~~~~~~~~~~~~~~------------  233 (311)
T d1nr0a1         166 SDDNTVAIFEGPPFKFKSTFGEHTKFVHSVRYNPDGSLFASTGGDGTIVLYNGVDGTKTGVFEDDSLK------------  233 (311)
T ss_dssp             ETTSCEEEEETTTBEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEECBCTTSS------------
T ss_pred             ccccccccccccccccccccccccccccccccCccccccccccccccccccccccccccccccccccc------------
Confidence            9999999999987                    78999999999999999999999888777643221            


Q ss_pred             CeeEEccccceEEEEEcCCCCeEEEeeecCCCcEEEEeecc
Q 042146          221 GKYIVSHRDPVISVASHPAKNIIASGALDNDRTMKIWTQEK  261 (262)
Q Consensus       221 ~~~~~~~~~~v~~~~~~p~~~~l~~~~~d~d~~i~iw~~~~  261 (262)
                         ..+|...|++++|+|++++|++|+  .||.|+|||+++
T Consensus       234 ---~~~h~~~V~~~~~s~~~~~l~tgs--~Dg~v~iwd~~t  269 (311)
T d1nr0a1         234 ---NVAHSGSVFGLTWSPDGTKIASAS--ADKTIKIWNVAT  269 (311)
T ss_dssp             ---SCSSSSCEEEEEECTTSSEEEEEE--TTSEEEEEETTT
T ss_pred             ---cccccccccccccCCCCCEEEEEe--CCCeEEEEECCC
Confidence               223889999999999999999999  899999999864

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

Probab=100.00  E-value=2.9e-34  Score=225.39  Aligned_cols=198  Identities=16%  Similarity=0.183  Sum_probs=157.3

Q ss_pred             CcCceEEEEEccCCCeEEEecCCCeEEEeecCCCCCCCCCCCCCCccccCCccccccceeEEEEecCCCccceecccCCc
Q 042146           22 HLRAVSYVKFSHDGRLLTSSSAEKTLLTYSLSSISNFDSTPPSPLQKFTGHEQGISDLATIRLWDVPTATSLKTLIGHTN  101 (262)
Q Consensus        22 h~~~v~~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~i~v~d~~~~~~~~~~~~~~~  101 (262)
                      +.+||+|++|+|++++||+|+.||.|++||++.                                 .....+..+.+|..
T Consensus         6 ~~~pIt~~~~s~dg~~la~~~~~~~i~iw~~~~---------------------------------~~~~~~~~l~gH~~   52 (371)
T d1k8kc_           6 LVEPISCHAWNKDRTQIAICPNNHEVHIYEKSG---------------------------------NKWVQVHELKEHNG   52 (371)
T ss_dssp             CSSCCCEEEECTTSSEEEEECSSSEEEEEEEET---------------------------------TEEEEEEEEECCSS
T ss_pred             CCCCeEEEEECCCCCEEEEEeCCCEEEEEECCC---------------------------------CCEEEEEEecCCCC
Confidence            357899999999999999999999999996532                                 11234566788999


Q ss_pred             ceEEEEEeCCCCEEEeecCCCeEEEEECCCCee--eeeeecCCCCeeeEEEccCCCEEEEEeCCCeEEEEeCCC------
Q 042146          102 YVFCINFNPQSNRIVSDTFNETIRIWDIKTGKC--LKVLPAHSDPVTAIDFNRDGTMIVTSSYDGLYRILDAST------  173 (262)
Q Consensus       102 ~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~--~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~d~~~------  173 (262)
                      +|.+++|+|++++|++++.|+.|++||++++..  ...+..|...|.+++|+|+++.|++++.|+++++|+...      
T Consensus        53 ~V~~l~fsp~~~~l~s~s~D~~i~vWd~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~l~~~s~d~~i~i~~~~~~~~~~~  132 (371)
T d1k8kc_          53 QVTGVDWAPDSNRIVTCGTDRNAYVWTLKGRTWKPTLVILRINRAARCVRWAPNEKKFAVGSGSRVISICYFEQENDWWV  132 (371)
T ss_dssp             CEEEEEEETTTTEEEEEETTSCEEEEEEETTEEEEEEECCCCSSCEEEEEECTTSSEEEEEETTSSEEEEEEETTTTEEE
T ss_pred             CEEEEEECCCCCEEEEEECCCeEEEEeecccccccccccccccccccccccccccccceeecccCcceeeeeeccccccc
Confidence            999999999999999999999999999987654  444567889999999999999999999999999998654      


Q ss_pred             ------------------CCccEEEEEcCCCeEEEEecCCCceeeEEeccCCceeEEEEEEecCCCe---eEEccccceE
Q 042146          174 ------------------PNGKFILVGTLDNTLRLWNYSTRKILKTYSGYTNSKYCISSTFSVTNGK---YIVSHRDPVI  232 (262)
Q Consensus       174 ------------------~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~v~  232 (262)
                                        |++++|++|+.|+.|++|+..................       ...+.   ...+|...|.
T Consensus       133 ~~~~~~~~~~~v~~v~~~p~~~~l~s~s~D~~v~v~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~v~  205 (371)
T d1k8kc_         133 CKHIKKPIRSTVLSLDWHPNSVLLAAGSCDFKCRIFSAYIKEVEERPAPTPWGSK-------MPFGELMFESSSSCGWVH  205 (371)
T ss_dssp             EEEECTTCCSCEEEEEECTTSSEEEEEETTSCEEEEECCCTTTSCCCCCBTTBSC-------CCTTCEEEECCCCSSCEE
T ss_pred             ccccccccccccccccccccccceeccccCcEEEEEeeccCcccccccccccccc-------ccceeeeeeccCccCcEE
Confidence                              7899999999999999999876543222111000000       00000   0112888999


Q ss_pred             EEEEcCCCCeEEEeeecCCCcEEEEeecc
Q 042146          233 SVASHPAKNIIASGALDNDRTMKIWTQEK  261 (262)
Q Consensus       233 ~~~~~p~~~~l~~~~~d~d~~i~iw~~~~  261 (262)
                      +++|+|++++|++++  .|+.|++||+++
T Consensus       206 ~~~~s~~g~~l~s~~--~d~~i~iwd~~~  232 (371)
T d1k8kc_         206 GVCFSANGSRVAWVS--HDSTVCLADADK  232 (371)
T ss_dssp             EEEECSSSSEEEEEE--TTTEEEEEEGGG
T ss_pred             EEEeecccccccccc--cCCcceEEeeec
Confidence            999999999999999  899999999864

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=7.5e-33  Score=217.97  Aligned_cols=220  Identities=27%  Similarity=0.473  Sum_probs=168.5

Q ss_pred             ccCcCceEEEEEccCCCeEEEecCCCeEEEeecCCCCCCCCCCCCCCccccCCccccccceeEEEEecCCCccceecccC
Q 042146           20 NGHLRAVSYVKFSHDGRLLTSSSAEKTLLTYSLSSISNFDSTPPSPLQKFTGHEQGISDLATIRLWDVPTATSLKTLIGH   99 (262)
Q Consensus        20 ~~h~~~v~~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~i~v~d~~~~~~~~~~~~~   99 (262)
                      .+|.+.|+|++|+|+|++||+|+ |++|+|||+.+...        ...+..+....        .+. ..........|
T Consensus        59 ~~H~~~V~~l~fs~dg~~lasg~-d~~i~iW~~~~~~~--------~~~~~~~~~~~--------~~~-~~~~~~~~~~~  120 (388)
T d1erja_          59 LDHTSVVCCVKFSNDGEYLATGC-NKTTQVYRVSDGSL--------VARLSDDSAAN--------KDP-ENLNTSSSPSS  120 (388)
T ss_dssp             EECSSCCCEEEECTTSSEEEEEC-BSCEEEEETTTCCE--------EEEECC--------------------------CC
T ss_pred             CCCCCcEEEEEECCCCCEEEEEe-CCeEEEEEecccce--------Eeeeccccccc--------ccc-cccccccccCC
Confidence            36999999999999999999987 89999998865322        11111111100        000 01112234568


Q ss_pred             CcceEEEEEeCCCCEEEeecCCCeEEEEECCCCeeeeeeecCCCCeeeEEEccCCCEEEEEeCCCeEEEEeCCC------
Q 042146          100 TNYVFCINFNPQSNRIVSDTFNETIRIWDIKTGKCLKVLPAHSDPVTAIDFNRDGTMIVTSSYDGLYRILDAST------  173 (262)
Q Consensus       100 ~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~d~~~------  173 (262)
                      ...|.+++|+|++++|++|+.||.|++||...++.+..+.+|...|.++++++++..+++++.++.+++||.+.      
T Consensus       121 ~~~V~~l~~s~~~~~l~s~~~dg~v~i~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~  200 (388)
T d1erja_         121 DLYIRSVCFSPDGKFLATGAEDRLIRIWDIENRKIVMILQGHEQDIYSLDYFPSGDKLVSGSGDRTVRIWDLRTGQCSLT  200 (388)
T ss_dssp             CCBEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEE
T ss_pred             CCCEEEEEECCCCCcceecccccccccccccccccccccccccccccccccccccccccccccceeeeeeeccccccccc
Confidence            88999999999999999999999999999999999999999999999999999999999999999999999887      


Q ss_pred             --------------CCccEEEEEcCCCeEEEEecCCCceeeEEec-------cCCceeEEEEEEecCCCeeEEc------
Q 042146          174 --------------PNGKFILVGTLDNTLRLWNYSTRKILKTYSG-------YTNSKYCISSTFSVTNGKYIVS------  226 (262)
Q Consensus       174 --------------~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~------  226 (262)
                                    +++++|++|+.||.|++||.+++..+..+..       |...+.++  .+.+....++.+      
T Consensus       201 ~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~h~~~v~~l--~~s~~~~~l~s~~~d~~i  278 (388)
T d1erja_         201 LSIEDGVTTVAVSPGDGKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSV--VFTRDGQSVVSGSLDRSV  278 (388)
T ss_dssp             EECSSCEEEEEECSTTCCEEEEEETTSCEEEEETTTCCEEEEEC------CCCSSCEEEE--EECTTSSEEEEEETTSEE
T ss_pred             cccccccccccccCCCCCeEEEEcCCCeEEEeecccCccceeeccccccccCCCCCEEEE--EECCCCCEEEEEECCCcE
Confidence                          5788999999999999999999887776643       33333333  333333333222      


Q ss_pred             ----------------------------cccceEEEEEcCCCCeEEEeeecCCCcEEEEeecc
Q 042146          227 ----------------------------HRDPVISVASHPAKNIIASGALDNDRTMKIWTQEK  261 (262)
Q Consensus       227 ----------------------------~~~~v~~~~~~p~~~~l~~~~~d~d~~i~iw~~~~  261 (262)
                                                  |...|.+++|+|++++|++|+  .||.|++||+++
T Consensus       279 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~sg~--~dg~i~vwd~~~  339 (388)
T d1erja_         279 KLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQNDEYILSGS--KDRGVLFWDKKS  339 (388)
T ss_dssp             EEEEC---------------CEEEEEECCSSCEEEEEECGGGCEEEEEE--TTSEEEEEETTT
T ss_pred             EEEeccCCccccccccccccceeeecccccceEEEEEECCCCCEEEEEe--CCCEEEEEECCC
Confidence                                        677899999999999999999  899999999864

>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Cdc4 propeller domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=6.4e-33  Score=214.94  Aligned_cols=229  Identities=22%  Similarity=0.396  Sum_probs=179.9

Q ss_pred             CCCCceeeec--ccccceecccCcCceEEEEEccCCCeEEEecCCCeEEEeecCCCCCCCCCCCC---------------
Q 042146            2 SSDRSLESFR--PYTLTQTLNGHLRAVSYVKFSHDGRLLTSSSAEKTLLTYSLSSISNFDSTPPS---------------   64 (262)
Q Consensus         2 s~d~~i~~~~--~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~---------------   64 (262)
                      +.|++|+.|+  ..++++++++|.++|++++|+|+ .+|++|+.|++|++|+.............               
T Consensus        30 s~Dg~i~vWd~~~~~~~~~l~~H~~~V~~l~~s~~-~~l~s~s~D~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  108 (355)
T d1nexb2          30 ADDKMIRVYDSINKKFLLQLSGHDGGVWALKYAHG-GILVSGSTDRTVRVWDIKKGCCTHVFEGHNSTVRCLDIVEYKNI  108 (355)
T ss_dssp             ETTTEEEEEETTTTEEEEEEECCSSCEEEEEEETT-TEEEEEETTCCEEEEETTTTEEEEEECCCSSCEEEEEEEEETTE
T ss_pred             eCCCeEEEEECCCCcEEEEEECCCCCEEEEEEcCC-CEEEEEeccccccccccccccccccccccccccccccccccccc
Confidence            4689999886  57789999999999999999985 58999999999999998653211000000               


Q ss_pred             ----------CCccc----------------------------------cCCcccc-------------ccceeEEEEec
Q 042146           65 ----------PLQKF----------------------------------TGHEQGI-------------SDLATIRLWDV   87 (262)
Q Consensus        65 ----------~~~~~----------------------------------~~~~~~v-------------~~~~~i~v~d~   87 (262)
                                .+..+                                  ..+...+             .....+++||+
T Consensus       109 ~~~~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~d~~i~~~d~  188 (355)
T d1nexb2         109 KYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHMASVRTVSGHGNIVVSGSYDNTLIVWDV  188 (355)
T ss_dssp             EEEEEEETTSEEEEEECCC-----------CCCEEESCTTTCTTEEEEEECCSSCEEEEEEETTEEEEEETTSCEEEEET
T ss_pred             ceeeeecCCCcEEEEEccCCceeccccccceeccceeccccccceeeeeeeccccccccccccceeeeecccceeeeeec
Confidence                      00000                                  0000000             00116888998


Q ss_pred             CCCccceecccCCcceEEEEEeCCCCEEEeecCCCeEEEEECCCCeeeeeeecCCCCeeeEEEccCCCEEEEEeCCCeEE
Q 042146           88 PTATSLKTLIGHTNYVFCINFNPQSNRIVSDTFNETIRIWDIKTGKCLKVLPAHSDPVTAIDFNRDGTMIVTSSYDGLYR  167 (262)
Q Consensus        88 ~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~  167 (262)
                      .+++.+....++...+.++.++|+++++++++.|+.|++||++++..+..+.+|...|.+++++  +++|++++.||.|+
T Consensus       189 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~h~~~v~~~~~~--~~~l~~~~~dg~i~  266 (355)
T d1nexb2         189 AQMKCLYILSGHTDRIYSTIYDHERKRCISASMDTTIRIWDLENGELMYTLQGHTALVGLLRLS--DKFLVSAAADGSIR  266 (355)
T ss_dssp             TTTEEEEEECCCSSCEEEEEEETTTTEEEEEETTSCEEEEETTTCCEEEEECCCSSCCCEEEEC--SSEEEEECTTSEEE
T ss_pred             ccccceeeeeccccccccccccccceeeecccccceEEeeeccccccccccccccccccccccc--cceeeeeecccccc
Confidence            8888888888888999999999999999999999999999999999999999999999999987  46999999999999


Q ss_pred             EEeCCC-------------------CCccEEEEEcCCCeEEEEecCCCceeeE-EeccCCceeEEEEEEecCCCeeEEcc
Q 042146          168 ILDAST-------------------PNGKFILVGTLDNTLRLWNYSTRKILKT-YSGYTNSKYCISSTFSVTNGKYIVSH  227 (262)
Q Consensus       168 ~~d~~~-------------------~~~~~l~~~~~dg~i~i~d~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~  227 (262)
                      +||++.                   +++.++++| .||.|++||+++++++.. +.+                      |
T Consensus       267 iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g-~d~~i~vwd~~tg~~~~~~~~~----------------------~  323 (355)
T d1nexb2         267 GWDANDYSRKFSYHHTNLSAITTFYVSDNILVSG-SENQFNIYNLRSGKLVHANILK----------------------D  323 (355)
T ss_dssp             EEETTTCCEEEEEECTTCCCCCEEEECSSEEEEE-ETTEEEEEETTTCCBCCSCTTT----------------------T
T ss_pred             cccccccceecccccCCceEEEEEcCCCCEEEEE-eCCEEEEEECCCCCEEEEEecC----------------------C
Confidence            999887                   456666655 589999999999998754 333                      8


Q ss_pred             ccceEEEEEcCCCCeEEEeeecCCCcEEEEee
Q 042146          228 RDPVISVASHPAKNIIASGALDNDRTMKIWTQ  259 (262)
Q Consensus       228 ~~~v~~~~~~p~~~~l~~~~~d~d~~i~iw~~  259 (262)
                      .++|.+++|+|+ .++++++  .||.++||.+
T Consensus       324 ~~~V~~v~~~~~-~~~~~~s--~dg~~~l~~~  352 (355)
T d1nexb2         324 ADQIWSVNFKGK-TLVAAVE--KDGQSFLEIL  352 (355)
T ss_dssp             CSEEEEEEEETT-EEEEEEE--SSSCEEEEEE
T ss_pred             CCCEEEEEEcCC-eEEEEEE--CCCcEEEEEE
Confidence            889999999986 5677888  8999777654

>d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=9e-32  Score=203.66  Aligned_cols=215  Identities=16%  Similarity=0.244  Sum_probs=152.4

Q ss_pred             cccceecccCcCceEEEEEccCCCeEEEecCCCeEEEeecCCCCCCCC--------CCCCCCccc---------------
Q 042146           13 YTLTQTLNGHLRAVSYVKFSHDGRLLTSSSAEKTLLTYSLSSISNFDS--------TPPSPLQKF---------------   69 (262)
Q Consensus        13 ~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~--------~~~~~~~~~---------------   69 (262)
                      .++++++++|.++|++++|+|    |+||+.||+|++||+........        .....+...               
T Consensus         3 ~~~i~~l~gH~~~I~~l~~s~----l~sgs~Dg~v~~Wd~~~~~~~h~~~V~~~~~~~~~~~~s~s~D~~v~~w~~~~~~   78 (287)
T d1pgua2           3 DEVLKTISGHNKGITALTVNP----LISGSYDGRIMEWSSSSMHQDHSNLIVSLDNSKAQEYSSISWDDTLKVNGITKHE   78 (287)
T ss_dssp             EEEEEEECCCSSCEEEEETTT----TEEEETTSCEEETTTTEEECCCCSCEEEEECCSTTCCEEEETTTEEEETTEEEEE
T ss_pred             cceeEEECCCCCceEEEEECc----EEEEeCCCeEEEEECCCCCCCCCCCEEEEEecCCCeEEEEeeccccccccccccc
Confidence            356778888888888888877    88888888888888765322110        000000000               


Q ss_pred             --------cCCccc----cccceeEEEEecCCCccceecccCCcceEEEEEeCCCCEEEeecCCC-eEEEEECCCCeeee
Q 042146           70 --------TGHEQG----ISDLATIRLWDVPTATSLKTLIGHTNYVFCINFNPQSNRIVSDTFNE-TIRIWDIKTGKCLK  136 (262)
Q Consensus        70 --------~~~~~~----v~~~~~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg-~i~vwd~~~~~~~~  136 (262)
                              ..+...    ......+.+|+..+++.+..+..+ ..  ..+++|+++.+++++.++ .+++|++...+...
T Consensus        79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~--~~~~~~~~~~~~v~~~~~~~v~~~~~~~~~~~~  155 (287)
T d1pgua2          79 FGSQPKVASANNDGFTAVLTNDDDLLILQSFTGDIIKSVRLN-SP--GSAVSLSQNYVAVGLEEGNTIQVFKLSDLEVSF  155 (287)
T ss_dssp             CSSCEEEEEECSSSEEEEEETTSEEEEEETTTCCEEEEEECS-SC--EEEEEECSSEEEEEETTTSCEEEEETTEEEEEE
T ss_pred             cccceeeeeeccCCceEEEeecccceeeeccceeeeeecccc-ce--eeeeeccCcceeeeccccceeeeeeccccceee
Confidence                    000000    001114566666666655555432 22  345677788888777665 79999998766555


Q ss_pred             eee-cCCCCeeeEEEccCCCEEEEEeCCCeEEEEeCCC-------------------------------CCccEEEEEcC
Q 042146          137 VLP-AHSDPVTAIDFNRDGTMIVTSSYDGLYRILDAST-------------------------------PNGKFILVGTL  184 (262)
Q Consensus       137 ~~~-~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~d~~~-------------------------------~~~~~l~~~~~  184 (262)
                      .+. .|..++++++|+|++.+|++++.||.|++||+..                               .++.++++|+.
T Consensus       156 ~~~~~~~~~v~~~~~s~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~~~~~~~~l~sgs~  235 (287)
T d1pgua2         156 DLKTPLRAKPSYISISPSETYIAAGDVMGKILLYDLQSREVKTSRWAFRTSKINAISWKPAEKGANEEEIEEDLVATGSL  235 (287)
T ss_dssp             ECSSCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEECCSCCCSSCEEEEEECCCC------CCSCCEEEEEET
T ss_pred             eeeeccCCceeEEEeccCccccccccccccccceeecccccccccccccccccceeeecccccccccccCCCCeeEeecC
Confidence            543 4778899999999999999999999999999875                               35678999999


Q ss_pred             CCeEEEEecCC-CceeeEEeccCCceeEEEEEEecCCCeeEEccccceEEEEEcCCCCeEEEeeecCCCcEEEEee
Q 042146          185 DNTLRLWNYST-RKILKTYSGYTNSKYCISSTFSVTNGKYIVSHRDPVISVASHPAKNIIASGALDNDRTMKIWTQ  259 (262)
Q Consensus       185 dg~i~i~d~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~d~d~~i~iw~~  259 (262)
                      |+.|++||+++ ++.+..+.+                      |...|++++|+|++ .|++++  .|+.|++|++
T Consensus       236 D~~i~iw~~~~~~~~~~~~~~----------------------h~~~V~~v~~~~~~-~l~s~g--~D~~v~iW~i  286 (287)
T d1pgua2         236 DTNIFIYSVKRPMKIIKALNA----------------------HKDGVNNLLWETPS-TLVSSG--ADACIKRWNV  286 (287)
T ss_dssp             TSCEEEEESSCTTCCEEETTS----------------------STTCEEEEEEEETT-EEEEEE--TTSCEEEEEE
T ss_pred             CCeEEEEECCCCCeEEEEeCC----------------------CCCCeEEEEECCCC-EEEEEE--CCCeEEEEEE
Confidence            99999999976 445555555                      88999999999986 588888  8999999996

>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: Cell cycle arrest protein BUB3
domain: Cell cycle arrest protein BUB3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=4.5e-31  Score=203.14  Aligned_cols=215  Identities=15%  Similarity=0.202  Sum_probs=157.6

Q ss_pred             cccceecccCcCceEEEEEccCCCeEEEecCCCeEEEeecCCCCCCCCCCCCCCccccCCccccccceeEEEEecCCCcc
Q 042146           13 YTLTQTLNGHLRAVSYVKFSHDGRLLTSSSAEKTLLTYSLSSISNFDSTPPSPLQKFTGHEQGISDLATIRLWDVPTATS   92 (262)
Q Consensus        13 ~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~i~v~d~~~~~~   92 (262)
                      +++++..++|+..|++|+|+|++++||+|+.||+|+|||++...                                ....
T Consensus         1 ~~~v~~~~~h~d~I~~l~fsp~~~~L~s~s~Dg~v~iwd~~~~~--------------------------------~~~~   48 (342)
T d1yfqa_           1 MQIVQIEQAPKDYISDIKIIPSKSLLLITSWDGSLTVYKFDIQA--------------------------------KNVD   48 (342)
T ss_dssp             CEEEECSSCCSSCEEEEEEEGGGTEEEEEETTSEEEEEEEETTT--------------------------------TEEE
T ss_pred             CCeEEcCCCCCCCEEEEEEeCCCCEEEEEECCCeEEEEEccCCC--------------------------------cceE
Confidence            35678889999999999999999999999999999999764311                                0111


Q ss_pred             ceecccCCcceEEEEEeCC-CCEEEeecCCCeEEEEECCCCeeeeeeecCCC-CeeeEEEccCCCEEEEEeCCCeEEEEe
Q 042146           93 LKTLIGHTNYVFCINFNPQ-SNRIVSDTFNETIRIWDIKTGKCLKVLPAHSD-PVTAIDFNRDGTMIVTSSYDGLYRILD  170 (262)
Q Consensus        93 ~~~~~~~~~~v~~~~~~~~-~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~-~v~~~~~~~~~~~l~~~~~dg~i~~~d  170 (262)
                      +....+|..+|.+++|+|+ +.+|++|+.||.|++|++...........+.. ......+.++...+++++.++.+++||
T Consensus        49 ~~~~~~h~~~V~~v~f~~~~~~~l~sg~~d~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wd  128 (342)
T d1yfqa_          49 LLQSLRYKHPLLCCNFIDNTDLQIYVGTVQGEILKVDLIGSPSFQALTNNEANLGICRICKYGDDKLIAASWDGLIEVID  128 (342)
T ss_dssp             EEEEEECSSCEEEEEEEESSSEEEEEEETTSCEEEECSSSSSSEEECBSCCCCSCEEEEEEETTTEEEEEETTSEEEEEC
T ss_pred             EEEecCCCCCEEEEEEeCCCCCEEEEcccccceeeeecccccccccccccccccccccccccccccccccccccccceee
Confidence            2233468999999999986 45799999999999999988776666655444 344555666888999999999999999


Q ss_pred             CCC--------------------------CCccEEEEEcCCCeEEEEecCCCceeeEEecc---CCceeEEEE-------
Q 042146          171 AST--------------------------PNGKFILVGTLDNTLRLWNYSTRKILKTYSGY---TNSKYCISS-------  214 (262)
Q Consensus       171 ~~~--------------------------~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~---~~~~~~~~~-------  214 (262)
                      ++.                          +.+..+++++.|+.|++||++..+........   .....+...       
T Consensus       129 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  208 (342)
T d1yfqa_         129 PRNYGDGVIAVKNLNSNNTKVKNKIFTMDTNSSRLIVGMNNSQVQWFRLPLCEDDNGTIEESGLKYQIRDVALLPKEQEG  208 (342)
T ss_dssp             HHHHTTBCEEEEESCSSSSSSCCCEEEEEECSSEEEEEESTTEEEEEESSCCTTCCCEEEECSCSSCEEEEEECSGGGCE
T ss_pred             ccccccceeeecccccccccceeeeeeeeccCCceeeecCCCcEEEEecccCcccceeeeecccccceeeeEeecCCCCE
Confidence            754                          46778999999999999999876543322211   111111110       


Q ss_pred             -EEecCCCeeE----------------------------EccccceEEEEEcCCCCeEEEeeecCCCcEEEEeecc
Q 042146          215 -TFSVTNGKYI----------------------------VSHRDPVISVASHPAKNIIASGALDNDRTMKIWTQEK  261 (262)
Q Consensus       215 -~~~~~~~~~~----------------------------~~~~~~v~~~~~~p~~~~l~~~~~d~d~~i~iw~~~~  261 (262)
                       .....++...                            .+|...|++++|+|++++|++|+  .||.|++||+++
T Consensus       209 ~~~~s~dg~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~lasg~--~Dg~v~vWD~~~  282 (342)
T d1yfqa_         209 YACSSIDGRVAVEFFDDQGDDYNSSKRFAFRCHRLNLKDTNLAYPVNSIEFSPRHKFLYTAG--SDGIISCWNLQT  282 (342)
T ss_dssp             EEEEETTSEEEEEECCTTCCSTTCTTCEEEECCCCCTTCCSSCCCEEEEEECTTTCCEEEEE--TTSCEEEEETTT
T ss_pred             EEeecCCCeEEEEEecCCcceeeccccceeeeeeeccCCCcccccceeEEecCCccEEEEEC--CCCEEEEEECCC
Confidence             0001111110                            11556789999999999999999  999999999864

>d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD-repeat protein 1 (beta-TRCP1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.98  E-value=1.8e-30  Score=195.88  Aligned_cols=225  Identities=21%  Similarity=0.426  Sum_probs=173.8

Q ss_pred             CCCCceeeec--ccccceecccCcCceEEEEEccCCCeEEEecCCCeEEEeecCCCCCCCCCCCCCCc--cccCCcc---
Q 042146            2 SSDRSLESFR--PYTLTQTLNGHLRAVSYVKFSHDGRLLTSSSAEKTLLTYSLSSISNFDSTPPSPLQ--KFTGHEQ---   74 (262)
Q Consensus         2 s~d~~i~~~~--~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~--~~~~~~~---   74 (262)
                      +.||+|+.|+  +.++++++++|.++|++++|  ++++|++|+.|+.|++|++...............  .......   
T Consensus        32 s~Dg~i~vWd~~~~~~~~~l~~H~~~V~~v~~--~~~~l~s~s~D~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  109 (293)
T d1p22a2          32 LRDNTIKIWDKNTLECKRILTGHTGSVLCLQY--DERVIITGSSDSTVRVWDVNTGEMLNTLIHHCEAVLHLRFNNGMMV  109 (293)
T ss_dssp             ESSSCEEEEESSSCCEEEEECCCSSCEEEEEC--CSSEEEEEETTSCEEEEESSSCCEEEEECCCCSCEEEEECCTTEEE
T ss_pred             eCCCeEEEEECCCCcEEEEEecCCCCEeeeec--ccceeeccccccccccccccccccccccccccccccccccccccee
Confidence            4799998885  67789999999999999987  5789999999999999998764332211111111  1111111   


Q ss_pred             ccccceeEEEEecCCCccc---eecccCCcceEEEEEeCCCCEEEeecCCCeEEEEECCCCeeeeeeecCCCCeeeEEEc
Q 042146           75 GISDLATIRLWDVPTATSL---KTLIGHTNYVFCINFNPQSNRIVSDTFNETIRIWDIKTGKCLKVLPAHSDPVTAIDFN  151 (262)
Q Consensus        75 ~v~~~~~i~v~d~~~~~~~---~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~  151 (262)
                      .......+.+|+.......   ..+..|...+.++.+.  ...+++++.|+.|++||+++++.+..+.++...+..+.++
T Consensus       110 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~~~~~s~d~~i~~~d~~~~~~~~~~~~~~~~v~~~~~~  187 (293)
T d1p22a2         110 TCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDFD--DKYIVSASGDRTIKVWNTSTCEFVRTLNGHKRGIACLQYR  187 (293)
T ss_dssp             EEETTSCEEEEECSSSSCCEEEEEECCCSSCEEEEEEE--TTEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEEE
T ss_pred             ecccccceeEeeccccccccccccccccccccccceec--ccccccccCCCceeeecCCCCcEEEEEcccccccccccCC
Confidence            1122337899998776543   3456778888887776  5578889999999999999999999999998888887765


Q ss_pred             cCCCEEEEEeCCCeEEEEeCCC------------------CCccEEEEEcCCCeEEEEecCCCc---------eeeEEec
Q 042146          152 RDGTMIVTSSYDGLYRILDAST------------------PNGKFILVGTLDNTLRLWNYSTRK---------ILKTYSG  204 (262)
Q Consensus       152 ~~~~~l~~~~~dg~i~~~d~~~------------------~~~~~l~~~~~dg~i~i~d~~~~~---------~~~~~~~  204 (262)
                        +..+++++.||.|++||++.                  +++.+|++|+.||.|++||+....         ++..+.+
T Consensus       188 --~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~  265 (293)
T d1p22a2         188 --DRLVVSGSSDNTIRLWDIECGACLRVLEGHEELVRCIRFDNKRIVSGAYDGKIKVWDLVAALDPRAPAGTLCLRTLVE  265 (293)
T ss_dssp             --TTEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEECCSSEEEEEETTSCEEEEEHHHHTSTTSCTTTTEEEEECC
T ss_pred             --CCeEEEecCCCEEEEEecccceeeeeecccceeeeeccccceEEEEEcCCCEEEEEECCCCccccccCCceeeEEecC
Confidence              56899999999999999887                  678899999999999999986432         3444444


Q ss_pred             cCCceeEEEEEEecCCCeeEEccccceEEEEEcCCCCeEEEeeecCCCcEEEEe
Q 042146          205 YTNSKYCISSTFSVTNGKYIVSHRDPVISVASHPAKNIIASGALDNDRTMKIWT  258 (262)
Q Consensus       205 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~d~d~~i~iw~  258 (262)
                                            |.++|++++|+  +.+|+++|  .||+|+|||
T Consensus       266 ----------------------H~~~V~~v~~d--~~~l~s~s--~Dg~i~iWD  293 (293)
T d1p22a2         266 ----------------------HSGRVFRLQFD--EFQIVSSS--HDDTILIWD  293 (293)
T ss_dssp             ----------------------CSSCCCCEEEC--SSCEEECC--SSSEEEEEC
T ss_pred             ----------------------CCCCEEEEEEc--CCEEEEEe--cCCEEEEeC
Confidence                                  88999999995  56899999  899999997

>d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Antiviral protein Ski8 (Ski8p)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.97  E-value=3.5e-30  Score=203.51  Aligned_cols=230  Identities=17%  Similarity=0.224  Sum_probs=161.8

Q ss_pred             ceecccCcCceEEEEEccCCCeEEEecCCCeEEEeecCCCCCCCCCCCCCCccccCCcc---------------------
Q 042146           16 TQTLNGHLRAVSYVKFSHDGRLLTSSSAEKTLLTYSLSSISNFDSTPPSPLQKFTGHEQ---------------------   74 (262)
Q Consensus        16 ~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~---------------------   74 (262)
                      ....++|.+.|.++++++  ++|+|+|.|++|++||..........  ........+..                     
T Consensus         7 ~~~~~~H~~~I~~v~~~~--~~l~S~S~D~~iriWd~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   82 (393)
T d1sq9a_           7 ANAGKAHDADIFSVSACN--SFTVSCSGDGYLKVWDNKLLDNENPK--DKSYSHFVHKSGLHHVDVLQAIERDAFELCLV   82 (393)
T ss_dssp             EEESSCSSSCEEEEEECS--SEEEEEETTSEEEEEESBCCTTCCGG--GGEEEEECCTTCEEEEEEEEEEETTTEEEEEE
T ss_pred             eecCCcccCccEEEEEeC--CEEEEEECCCeEEEEECCCCCCCccc--ceeEeeeeccCCceEeeeEeeeccCCCCCcEE
Confidence            355689999999999865  68999999999999997543211000  00000000100                     


Q ss_pred             -ccccceeEEEEecCCCccceec----------ccCCcceEEEEEeCC-----CCEEEeecCCCeEEEEECCCCe-----
Q 042146           75 -GISDLATIRLWDVPTATSLKTL----------IGHTNYVFCINFNPQ-----SNRIVSDTFNETIRIWDIKTGK-----  133 (262)
Q Consensus        75 -~v~~~~~i~v~d~~~~~~~~~~----------~~~~~~v~~~~~~~~-----~~~l~~~~~dg~i~vwd~~~~~-----  133 (262)
                       .....+.|++|++.........          ..+...+..+++.++     +.++++++.||.+++|++....     
T Consensus        83 ~s~~~dg~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~i~vw~~~~~~~~~~~  162 (393)
T d1sq9a_          83 ATTSFSGDLLFYRITREDETKKVIFEKLDLLDSDMKKHSFWALKWGASNDRLLSHRLVATDVKGTTYIWKFHPFADESNS  162 (393)
T ss_dssp             EEEETTSCEEEEEEEECTTTCCEEEEEECCSCTTGGGSCEEEEEEECCC----CEEEEEEETTSCEEEEEEESSSSHHHH
T ss_pred             EEEeCCCcEEEEEccCCCceeeeeccccceeeeccCCCceEEEEEecCCCcccccEEEEEcCCCcEEEEEeecCCcccce
Confidence             0011337889987654432211          224456778888775     4678999999999999985321     


Q ss_pred             -------------eeeeeecCCCCeeeEEEccCCCEEEEEeCCCeEEEEeCCC--------------------------C
Q 042146          134 -------------CLKVLPAHSDPVTAIDFNRDGTMIVTSSYDGLYRILDAST--------------------------P  174 (262)
Q Consensus       134 -------------~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~d~~~--------------------------~  174 (262)
                                   .......+...+.+++|+|++ +|++|+.||+|++||+.+                          |
T Consensus       163 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~s~dg-~lasgs~Dg~i~iwd~~~~~~~~~~~~~~~l~~h~~~V~~l~~sp  241 (393)
T d1sq9a_         163 LTLNWSPTLELQGTVESPMTPSQFATSVDISERG-LIATGFNNGTVQISELSTLRPLYNFESQHSMINNSNSIRSVKFSP  241 (393)
T ss_dssp             TTTCCCCEEEEEEEECCSSSSCCCCCEEEECTTS-EEEEECTTSEEEEEETTTTEEEEEEECCC---CCCCCEEEEEECS
T ss_pred             eeeeeccceecccceecccCCCCcEEEEEECCCC-EEEEEeCCCcEEEEeecccccccccccccccccccceEEEccccc
Confidence                         111122355678999999987 889999999999999864                          7


Q ss_pred             CccEEEEEcCCC---eEEEEecCCCceeeEEeccCCceeEEEEEEecCCCeeEEccccceEEEEEcCCCCeEEEeeecCC
Q 042146          175 NGKFILVGTLDN---TLRLWNYSTRKILKTYSGYTNSKYCISSTFSVTNGKYIVSHRDPVISVASHPAKNIIASGALDND  251 (262)
Q Consensus       175 ~~~~l~~~~~dg---~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~d~d  251 (262)
                      ++++|++|+.|+   .|++||+++++++..+.........         ...+.+|.+.|++++|+|++++|+++|  .|
T Consensus       242 dg~~l~sgs~D~t~~~i~lwd~~~g~~~~~l~~~~~~~~~---------~~~~~gH~~~V~~l~fspd~~~l~S~s--~D  310 (393)
T d1sq9a_         242 QGSLLAIAHDSNSFGCITLYETEFGERIGSLSVPTHSSQA---------SLGEFAHSSWVMSLSFNDSGETLCSAG--WD  310 (393)
T ss_dssp             STTEEEEEEEETTEEEEEEEETTTCCEEEEECBC-----------------CCBSBSSCEEEEEECSSSSEEEEEE--TT
T ss_pred             ccceeeeecCCCCcceeeecccccceeeeeeccccccccc---------eeeeecccCceeeeccCCCCCeeEEEC--CC
Confidence            899999999886   5999999999999888643322111         112334999999999999999999999  89


Q ss_pred             CcEEEEeecc
Q 042146          252 RTMKIWTQEK  261 (262)
Q Consensus       252 ~~i~iw~~~~  261 (262)
                      ++|+|||+++
T Consensus       311 ~~v~vWd~~~  320 (393)
T d1sq9a_         311 GKLRFWDVKT  320 (393)
T ss_dssp             SEEEEEETTT
T ss_pred             CEEEEEECCC
Confidence            9999999864

>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Cdc4 propeller domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.97  E-value=2.1e-29  Score=194.97  Aligned_cols=202  Identities=25%  Similarity=0.442  Sum_probs=155.4

Q ss_pred             ceecccCcCce-EEEEEccCCCeEEEecCCCeEEEeecCCCCCCCCCCCCCCccccCCccccccceeEEEEecCCCccce
Q 042146           16 TQTLNGHLRAV-SYVKFSHDGRLLTSSSAEKTLLTYSLSSISNFDSTPPSPLQKFTGHEQGISDLATIRLWDVPTATSLK   94 (262)
Q Consensus        16 ~~~~~~h~~~v-~~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~i~v~d~~~~~~~~   94 (262)
                      ..+|+||...| +|++|  ++++||||+.||+|++||+                                   .+++.+.
T Consensus         5 ~~tL~GH~~~vitc~~~--~~~~l~tgs~Dg~i~vWd~-----------------------------------~~~~~~~   47 (355)
T d1nexb2           5 RTTLRGHMTSVITCLQF--EDNYVITGADDKMIRVYDS-----------------------------------INKKFLL   47 (355)
T ss_dssp             EEEEECCSSSCEEEEEE--ETTEEEEEETTTEEEEEET-----------------------------------TTTEEEE
T ss_pred             cEEECCcCCCcEEEEEE--CCCEEEEEeCCCeEEEEEC-----------------------------------CCCcEEE
Confidence            45789999886 56555  6789999999999888854                                   5677888


Q ss_pred             ecccCCcceEEEEEeCCCCEEEeecCCCeEEEEECCCCeeeeeeecCCC--CeeeEEEccCCCEEEEEeCCCeEEEEeCC
Q 042146           95 TLIGHTNYVFCINFNPQSNRIVSDTFNETIRIWDIKTGKCLKVLPAHSD--PVTAIDFNRDGTMIVTSSYDGLYRILDAS  172 (262)
Q Consensus        95 ~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~--~v~~~~~~~~~~~l~~~~~dg~i~~~d~~  172 (262)
                      ++.+|.+.|.+++|+|+ .+|++|+.|+.|++|++...+..........  ......+.+++..+++++.|+.|++||++
T Consensus        48 ~l~~H~~~V~~l~~s~~-~~l~s~s~D~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~iw~~~  126 (355)
T d1nexb2          48 QLSGHDGGVWALKYAHG-GILVSGSTDRTVRVWDIKKGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLP  126 (355)
T ss_dssp             EEECCSSCEEEEEEETT-TEEEEEETTCCEEEEETTTTEEEEEECCCSSCEEEEEEEEETTEEEEEEEETTSEEEEEECC
T ss_pred             EEECCCCCEEEEEEcCC-CEEEEEecccccccccccccccccccccccccccccccccccccceeeeecCCCcEEEEEcc
Confidence            88999999999999985 5899999999999999998887666544333  34556677888999999999999999987


Q ss_pred             C-----------------------------------------CCccEEEEEcCCCeEEEEecCCCceeeEEeccCCceeE
Q 042146          173 T-----------------------------------------PNGKFILVGTLDNTLRLWNYSTRKILKTYSGYTNSKYC  211 (262)
Q Consensus       173 ~-----------------------------------------~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~  211 (262)
                      .                                         +++++++++..|+.|++||+++++.+.....+......
T Consensus       127 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~  206 (355)
T d1nexb2         127 KESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHMASVRTVSGHGNIVVSGSYDNTLIVWDVAQMKCLYILSGHTDRIYS  206 (355)
T ss_dssp             C-----------CCCEEESCTTTCTTEEEEEECCSSCEEEEEEETTEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEE
T ss_pred             CCceeccccccceeccceeccccccceeeeeeeccccccccccccceeeeecccceeeeeecccccceeeeecccccccc
Confidence            5                                         34678888888888999998888877777665544433


Q ss_pred             EEEEEecCCCee----------------------EEccccceEEEEEcCCCCeEEEeeecCCCcEEEEeecc
Q 042146          212 ISSTFSVTNGKY----------------------IVSHRDPVISVASHPAKNIIASGALDNDRTMKIWTQEK  261 (262)
Q Consensus       212 ~~~~~~~~~~~~----------------------~~~~~~~v~~~~~~p~~~~l~~~~~d~d~~i~iw~~~~  261 (262)
                      ..  +.+....+                      +.+|...|.+++++|  ++|++++  .||.|++||+++
T Consensus       207 ~~--~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~h~~~v~~~~~~~--~~l~~~~--~dg~i~iwd~~~  272 (355)
T d1nexb2         207 TI--YDHERKRCISASMDTTIRIWDLENGELMYTLQGHTALVGLLRLSD--KFLVSAA--ADGSIRGWDAND  272 (355)
T ss_dssp             EE--EETTTTEEEEEETTSCEEEEETTTCCEEEEECCCSSCCCEEEECS--SEEEEEC--TTSEEEEEETTT
T ss_pred             cc--ccccceeeecccccceEEeeecccccccccccccccccccccccc--ceeeeee--cccccccccccc
Confidence            32  22222221                      122778888888874  6888888  889999998764

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.97  E-value=2.6e-28  Score=188.07  Aligned_cols=167  Identities=20%  Similarity=0.393  Sum_probs=147.7

Q ss_pred             ccceecccCCcceEEEEEeCCCCEEEeecCCCeEEEEECCCCeeeeeeecCCCCeeeEEEccCCCEEEEEeCCCeEEEEe
Q 042146           91 TSLKTLIGHTNYVFCINFNPQSNRIVSDTFNETIRIWDIKTGKCLKVLPAHSDPVTAIDFNRDGTMIVTSSYDGLYRILD  170 (262)
Q Consensus        91 ~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~d  170 (262)
                      +..+++++|.+.|++++|+|++++|++|+.||+|++||+.+++.+..+..|..+|.+++|+|++.++++++.|+.+.+|+
T Consensus        46 ~~~~tL~GH~~~I~~l~~s~~~~~l~sgs~Dg~v~iWd~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~d~~i~~~~  125 (340)
T d1tbga_          46 RTRRTLRGHLAKIYAMHWGTDSRLLVSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSGNYVACGGLDNICSIYN  125 (340)
T ss_dssp             CEEEEECCCSSCEEEEEECTTSSEEEEEETTTEEEEEETTTTEEEEEEECSCSCEEEEEECTTSSEEEEEETTCCEEEEE
T ss_pred             eeeEEECCCCCCEEEEEECCCCCEEEEEECCCceeeeecccceeEEEEecccccEEeeEeeccceeeeeecccceeeccc
Confidence            45567899999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCC-----------------------------------------------------------------CCccEEEEEcCC
Q 042146          171 AST-----------------------------------------------------------------PNGKFILVGTLD  185 (262)
Q Consensus       171 ~~~-----------------------------------------------------------------~~~~~l~~~~~d  185 (262)
                      ...                                                                 +.+.++++|+.|
T Consensus       126 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d  205 (340)
T d1tbga_         126 LKTREGNVRVSRELAGHTGYLSCCRFLDDNQIVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACD  205 (340)
T ss_dssp             SSSSCSCCCEEEEECCCSSCEEEEEEEETTEEEEEETTTEEEEEETTTTEEEEEEECCSSCEEEEEECTTSSEEEEEETT
T ss_pred             ccccccccccceecccccccccccccccccccccccccccccccccccccccccccccceeEeeeccccccceeEEeecC
Confidence            654                                                                 577899999999


Q ss_pred             CeEEEEecCCCceeeEEeccCCceeEEEEEEecCCCeeEEc------------------------cccceEEEEEcCCCC
Q 042146          186 NTLRLWNYSTRKILKTYSGYTNSKYCISSTFSVTNGKYIVS------------------------HRDPVISVASHPAKN  241 (262)
Q Consensus       186 g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------------------~~~~v~~~~~~p~~~  241 (262)
                      +.|++||+++++++..+.+|...+.+++  +.+....++.+                        +...|.+++|+|+++
T Consensus       206 ~~v~i~d~~~~~~~~~~~~h~~~i~~v~--~~p~~~~l~s~s~d~~i~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~  283 (340)
T d1tbga_         206 ASAKLWDVREGMCRQTFTGHESDINAIC--FFPNGNAFATGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGR  283 (340)
T ss_dssp             TEEEEEETTTTEEEEEECCCSSCEEEEE--ECTTSSEEEEEETTSCEEEEETTTTEEEEEECCTTCCSCEEEEEECSSSC
T ss_pred             ceEEEEECCCCcEEEEEeCCCCCeEEEE--ECCCCCEEEEEeCCCeEEEEeecccccccccccccccCceEEEEECCCCC
Confidence            9999999999999999999888777654  33333333332                        566799999999999


Q ss_pred             eEEEeeecCCCcEEEEeecc
Q 042146          242 IIASGALDNDRTMKIWTQEK  261 (262)
Q Consensus       242 ~l~~~~~d~d~~i~iw~~~~  261 (262)
                      +|++|+  .||.|++||+.+
T Consensus       284 ~l~~g~--~dg~i~iwd~~~  301 (340)
T d1tbga_         284 LLLAGY--DDFNCNVWDALK  301 (340)
T ss_dssp             EEEEEE--TTSCEEEEETTT
T ss_pred             EEEEEE--CCCEEEEEECCC
Confidence            999999  899999999864

>d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.96  E-value=1.8e-28  Score=188.80  Aligned_cols=216  Identities=11%  Similarity=0.155  Sum_probs=158.8

Q ss_pred             ceEEEEEccCCCeEEEecCCC-eEEEeecCCCCCCCC-----CCCCCCccccC---Ccc-cc---ccceeEEEEecCCCc
Q 042146           25 AVSYVKFSHDGRLLTSSSAEK-TLLTYSLSSISNFDS-----TPPSPLQKFTG---HEQ-GI---SDLATIRLWDVPTAT   91 (262)
Q Consensus        25 ~v~~~~~~~~~~~l~s~~~d~-~i~iw~~~~~~~~~~-----~~~~~~~~~~~---~~~-~v---~~~~~i~v~d~~~~~   91 (262)
                      .+++++|+|+++.|+.++.+. .|+.|+.........     .....+.....   +.. .+   ...+.|++||+..++
T Consensus        19 ~~t~l~~~~~~~~la~~~~~~~~i~~~~~~~~~~~~~~~~~gh~~~~v~~v~fsP~~~g~~lasgs~Dg~i~iWd~~~~~   98 (325)
T d1pgua1          19 FTTHLSYDPTTNAIAYPCGKSAFVRCLDDGDSKVPPVVQFTGHGSSVVTTVKFSPIKGSQYLCSGDESGKVIVWGWTFDK   98 (325)
T ss_dssp             CCCCCEEETTTTEEEEEETTEEEEEECCSSCCSSCSEEEECTTTTSCEEEEEECSSTTCCEEEEEETTSEEEEEEEEEEG
T ss_pred             CeEEEEECCCCCEEEEEeCCCEEEEEEeCCCCCccceEEEeCCCCCCEEEEEEeeCCCCCEEEEEeCCCCEEEeeecCCc
Confidence            467899999999999886544 466776533211110     00111111111   111 11   223499999997665


Q ss_pred             ccee--------cccCCcceEEEEEeCCCCEEEeec--CCCeEEEEECCCCeeeeeeecCCCCeeeEEEccCCCE-EEEE
Q 042146           92 SLKT--------LIGHTNYVFCINFNPQSNRIVSDT--FNETIRIWDIKTGKCLKVLPAHSDPVTAIDFNRDGTM-IVTS  160 (262)
Q Consensus        92 ~~~~--------~~~~~~~v~~~~~~~~~~~l~~~~--~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~-l~~~  160 (262)
                      ....        +..|..+|.+++|+|+++++++++  .++.+.+|+..+++++..+.+|...|.+++|+|++.. ++++
T Consensus        99 ~~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~  178 (325)
T d1pgua1          99 ESNSVEVNVKSEFQVLAGPISDISWDFEGRRLCVVGEGRDNFGVFISWDSGNSLGEVSGHSQRINACHLKQSRPMRSMTV  178 (325)
T ss_dssp             GGTEEEEEEEEEEECCSSCEEEEEECTTSSEEEEEECCSSCSEEEEETTTCCEEEECCSCSSCEEEEEECSSSSCEEEEE
T ss_pred             ceeeeecccccccccccCcEEEEEECCCCCccceeeccccceEEEEeecccccceeeeecccccccccccccccceEEEe
Confidence            4432        345788999999999999987765  4678999999999999999999999999999998875 7789


Q ss_pred             eCCCeEEEEeCCC-----------------------CC-ccEEEEEcCCCeEEEEecCCCceeeEEeccCCceeEEEEEE
Q 042146          161 SYDGLYRILDAST-----------------------PN-GKFILVGTLDNTLRLWNYSTRKILKTYSGYTNSKYCISSTF  216 (262)
Q Consensus       161 ~~dg~i~~~d~~~-----------------------~~-~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~  216 (262)
                      +.|+.+++||+..                       |+ +.++++++.||.|++||+++++++..+.+|...        
T Consensus       179 ~~d~~v~~~d~~~~~~~~~~~~~~~~~~~v~~v~~~pd~~~~l~s~~~d~~i~iwd~~~~~~~~~l~~~~~~--------  250 (325)
T d1pgua1         179 GDDGSVVFYQGPPFKFSASDRTHHKQGSFVRDVEFSPDSGEFVITVGSDRKISCFDGKSGEFLKYIEDDQEP--------  250 (325)
T ss_dssp             ETTTEEEEEETTTBEEEEEECSSSCTTCCEEEEEECSTTCCEEEEEETTCCEEEEETTTCCEEEECCBTTBC--------
T ss_pred             ecccccccccccccccceecccccCCCCccEEeeeccccceeccccccccceeeeeeccccccccccccccc--------
Confidence            9999999999865                       44 688999999999999999999999999873322        


Q ss_pred             ecCCCeeEEccccceEEEEEcCCCCeEEEeeecCCCcEEEEeecc
Q 042146          217 SVTNGKYIVSHRDPVISVASHPAKNIIASGALDNDRTMKIWTQEK  261 (262)
Q Consensus       217 ~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~d~d~~i~iw~~~~  261 (262)
                                +...+.++.| |++++|++++  .|+.|+|||++.
T Consensus       251 ----------v~~~~~s~~~-~dg~~l~s~s--~D~~i~iwd~~~  282 (325)
T d1pgua1         251 ----------VQGGIFALSW-LDSQKFATVG--ADATIRVWDVTT  282 (325)
T ss_dssp             ----------CCSCEEEEEE-SSSSEEEEEE--TTSEEEEEETTT
T ss_pred             ----------cccceeeeec-cCCCEEEEEe--CCCeEEEEECCC
Confidence                      2223334444 6789999999  899999999864

>d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Antiviral protein Ski8 (Ski8p)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.96  E-value=5.7e-28  Score=190.70  Aligned_cols=252  Identities=13%  Similarity=0.194  Sum_probs=170.3

Q ss_pred             CCCCceeeeccc--------ccceecccCcCceEEEEE------cc-CCCeEEEecCCCeEEEeecCCCCCCCCCCC---
Q 042146            2 SSDRSLESFRPY--------TLTQTLNGHLRAVSYVKF------SH-DGRLLTSSSAEKTLLTYSLSSISNFDSTPP---   63 (262)
Q Consensus         2 s~d~~i~~~~~~--------~~~~~~~~h~~~v~~~~~------~~-~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~---   63 (262)
                      |.|++|+.|+..        ........|...+..+..      ++ ++.++++++.||.|++|++...........   
T Consensus        31 S~D~~iriWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~dg~v~~w~~~~~~~~~~~~~~~~  110 (393)
T d1sq9a_          31 SGDGYLKVWDNKLLDNENPKDKSYSHFVHKSGLHHVDVLQAIERDAFELCLVATTSFSGDLLFYRITREDETKKVIFEKL  110 (393)
T ss_dssp             ETTSEEEEEESBCCTTCCGGGGEEEEECCTTCEEEEEEEEEEETTTEEEEEEEEEETTSCEEEEEEEECTTTCCEEEEEE
T ss_pred             ECCCeEEEEECCCCCCCcccceeEeeeeccCCceEeeeEeeeccCCCCCcEEEEEeCCCcEEEEEccCCCceeeeecccc
Confidence            579999999632        122223345444333322      11 345788999999999999754322111000   


Q ss_pred             ---------CCCc--cccCCc--------cccccceeEEEEecCCCcc------------------ceecccCCcceEEE
Q 042146           64 ---------SPLQ--KFTGHE--------QGISDLATIRLWDVPTATS------------------LKTLIGHTNYVFCI  106 (262)
Q Consensus        64 ---------~~~~--~~~~~~--------~~v~~~~~i~v~d~~~~~~------------------~~~~~~~~~~v~~~  106 (262)
                               ....  .+....        ......+.+++|++.....                  ......+...+.++
T Consensus       111 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v  190 (393)
T d1sq9a_         111 DLLDSDMKKHSFWALKWGASNDRLLSHRLVATDVKGTTYIWKFHPFADESNSLTLNWSPTLELQGTVESPMTPSQFATSV  190 (393)
T ss_dssp             CCSCTTGGGSCEEEEEEECCC----CEEEEEEETTSCEEEEEEESSSSHHHHTTTCCCCEEEEEEEECCSSSSCCCCCEE
T ss_pred             ceeeeccCCCceEEEEEecCCCcccccEEEEEcCCCcEEEEEeecCCcccceeeeeeccceecccceecccCCCCcEEEE
Confidence                     0000  000000        0011233799999853211                  11122345668899


Q ss_pred             EEeCCCCEEEeecCCCeEEEEECCCCeeeeee------ecCCCCeeeEEEccCCCEEEEEeCCC---eEEEEeCCC----
Q 042146          107 NFNPQSNRIVSDTFNETIRIWDIKTGKCLKVL------PAHSDPVTAIDFNRDGTMIVTSSYDG---LYRILDAST----  173 (262)
Q Consensus       107 ~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~------~~~~~~v~~~~~~~~~~~l~~~~~dg---~i~~~d~~~----  173 (262)
                      +|+|++ +|++|+.||+|++||+++++++..+      .+|..+|.+++|+|++++|++|+.|+   .|++||+..    
T Consensus       191 ~~s~dg-~lasgs~Dg~i~iwd~~~~~~~~~~~~~~~l~~h~~~V~~l~~spdg~~l~sgs~D~t~~~i~lwd~~~g~~~  269 (393)
T d1sq9a_         191 DISERG-LIATGFNNGTVQISELSTLRPLYNFESQHSMINNSNSIRSVKFSPQGSLLAIAHDSNSFGCITLYETEFGERI  269 (393)
T ss_dssp             EECTTS-EEEEECTTSEEEEEETTTTEEEEEEECCC---CCCCCEEEEEECSSTTEEEEEEEETTEEEEEEEETTTCCEE
T ss_pred             EECCCC-EEEEEeCCCcEEEEeecccccccccccccccccccceEEEcccccccceeeeecCCCCcceeeecccccceee
Confidence            999987 8899999999999999998876544      46889999999999999999999887   489999863    


Q ss_pred             -----------------------------CCccEEEEEcCCCeEEEEecCCCceeeEEeccCCceeEEE--EEEecCCCe
Q 042146          174 -----------------------------PNGKFILVGTLDNTLRLWNYSTRKILKTYSGYTNSKYCIS--STFSVTNGK  222 (262)
Q Consensus       174 -----------------------------~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~  222 (262)
                                                   |++++|++|+.|++|++||+++++++.++.+|...+....  ..+.+....
T Consensus       270 ~~l~~~~~~~~~~~~~~gH~~~V~~l~fspd~~~l~S~s~D~~v~vWd~~~g~~~~~l~gH~~~v~~~~~~~~~~~~~~~  349 (393)
T d1sq9a_         270 GSLSVPTHSSQASLGEFAHSSWVMSLSFNDSGETLCSAGWDGKLRFWDVKTKERITTLNMHCDDIEIEEDILAVDEHGDS  349 (393)
T ss_dssp             EEECBC--------CCBSBSSCEEEEEECSSSSEEEEEETTSEEEEEETTTTEEEEEEECCGGGCSSGGGCCCBCTTSCB
T ss_pred             eeeccccccccceeeeecccCceeeeccCCCCCeeEEECCCCEEEEEECCCCCEEEEECCcCCcccCCccEEEECCCCCE
Confidence                                         7889999999999999999999999999999987664321  223322222


Q ss_pred             eEEccccceEEEEEcCCC----------CeEEEeeecCCCcEEEEee
Q 042146          223 YIVSHRDPVISVASHPAK----------NIIASGALDNDRTMKIWTQ  259 (262)
Q Consensus       223 ~~~~~~~~v~~~~~~p~~----------~~l~~~~~d~d~~i~iw~~  259 (262)
                      +   ....+.++.|.+.+          ..|++++  .|+.|++|+-
T Consensus       350 ~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~d~~ir~~~~  391 (393)
T d1sq9a_         350 L---AEPGVFDVKFLKKGWRSGMGADLNESLCCVC--LDRSIRWFRE  391 (393)
T ss_dssp             C---SSCCEEEEEEECTTTSBSTTCTTSCEEEEEE--TTTEEEEEEE
T ss_pred             E---EEcccceEEECccCceeccccCCCCEEEEEE--cCCeEEEEeC
Confidence            2   23457888887643          4588888  8999999974

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=99.96  E-value=2e-27  Score=180.55  Aligned_cols=167  Identities=21%  Similarity=0.378  Sum_probs=137.4

Q ss_pred             CccceecccCCcceEEEEEeCCCCEEEeecCCCeEEEEECCCCeeeeeee-cCCCCeeeEEEccCCCEEEEEeCCCeEEE
Q 042146           90 ATSLKTLIGHTNYVFCINFNPQSNRIVSDTFNETIRIWDIKTGKCLKVLP-AHSDPVTAIDFNRDGTMIVTSSYDGLYRI  168 (262)
Q Consensus        90 ~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~-~~~~~v~~~~~~~~~~~l~~~~~dg~i~~  168 (262)
                      |+..+.+.+|...|++++|+|++++|++|+.||+|++||+++++++..+. .|...|++++|+|+++ +++++.|+.+++
T Consensus         2 g~~~~~~~GH~~~V~~l~~s~dg~~l~s~s~Dg~v~vWd~~~~~~~~~~~~~h~~~v~~v~~~~~g~-~~~~~~d~~v~~   80 (299)
T d1nr0a2           2 GSIDQVRYGHNKAITALSSSADGKTLFSADAEGHINSWDISTGISNRVFPDVHATMITGIKTTSKGD-LFTVSWDDHLKV   80 (299)
T ss_dssp             TEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEECSSCSCSSCEEEEEECTTSC-EEEEETTTEEEE
T ss_pred             CccceEcCCCCCCcEEEEECCCCCEEEEEcCCCeEEEEECCCCcEEEEEcCCCCCcEEEEEeeccce-eecccceeeEEE
Confidence            45567889999999999999999999999999999999999999888774 6889999999999986 566778999999


Q ss_pred             EeCCC------------------------------------------------------------CCccEEEEEcCCCeE
Q 042146          169 LDAST------------------------------------------------------------PNGKFILVGTLDNTL  188 (262)
Q Consensus       169 ~d~~~------------------------------------------------------------~~~~~l~~~~~dg~i  188 (262)
                      |+...                                                            +++++|++|+.||.|
T Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i  160 (299)
T d1nr0a2          81 VPAGGSGVDSSKAVANKLSSQPLGLAVSADGDIAVAACYKHIAIYSHGKLTEVPISYNSSCVALSNDKQFVAVGGQDSKV  160 (299)
T ss_dssp             ECSSSSSSCTTSCCEEECSSCEEEEEECTTSSCEEEEESSEEEEEETTEEEEEECSSCEEEEEECTTSCEEEEEETTSEE
T ss_pred             eccCCccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence            99654                                                            678899999999999


Q ss_pred             EEEecCCCceee-EEeccCCceeEEEEEEecCCCeeEEc-------------------------cccceEEEEEcCCCCe
Q 042146          189 RLWNYSTRKILK-TYSGYTNSKYCISSTFSVTNGKYIVS-------------------------HRDPVISVASHPAKNI  242 (262)
Q Consensus       189 ~i~d~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~-------------------------~~~~v~~~~~~p~~~~  242 (262)
                      ++||+++++... ....|...+.++  .+.+....++.+                         |..+|++++|+|++++
T Consensus       161 ~~~d~~~~~~~~~~~~~~~~~i~~~--~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~  238 (299)
T d1nr0a2         161 HVYKLSGASVSEVKTIVHPAEITSV--AFSNNGAFLVATDQSRKVIPYSVANNFELAHTNSWTFHTAKVACVSWSPDNVR  238 (299)
T ss_dssp             EEEEEETTEEEEEEEEECSSCEEEE--EECTTSSEEEEEETTSCEEEEEGGGTTEESCCCCCCCCSSCEEEEEECTTSSE
T ss_pred             ccccccccccccccccccccccccc--ccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence            999998876544 233455555444  333333333332                         7789999999999999


Q ss_pred             EEEeeecCCCcEEEEeecc
Q 042146          243 IASGALDNDRTMKIWTQEK  261 (262)
Q Consensus       243 l~~~~~d~d~~i~iw~~~~  261 (262)
                      |++|+  .||.|++|+++.
T Consensus       239 l~sgs--~dg~i~iwd~~~  255 (299)
T d1nr0a2         239 LATGS--LDNSVIVWNMNK  255 (299)
T ss_dssp             EEEEE--TTSCEEEEETTC
T ss_pred             eEEEc--CCCEEEEEECCC
Confidence            99999  899999999864

>d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Tricorn protease domain 2
family: Tricorn protease domain 2
domain: Tricorn protease domain 2
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=99.96  E-value=4.7e-28  Score=188.22  Aligned_cols=169  Identities=14%  Similarity=0.048  Sum_probs=122.8

Q ss_pred             CCCceeeeccc-ccceecccCcCceEEEEEccCCCeEEEecCC--CeEEEeecCCCCCCCCCCCC-CCcc--ccCCcccc
Q 042146            3 SDRSLESFRPY-TLTQTLNGHLRAVSYVKFSHDGRLLTSSSAE--KTLLTYSLSSISNFDSTPPS-PLQK--FTGHEQGI   76 (262)
Q Consensus         3 ~d~~i~~~~~~-~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d--~~i~iw~~~~~~~~~~~~~~-~~~~--~~~~~~~v   76 (262)
                      +++.++.|+.. .....+ +|...|.+++|+|||++|++++.+  ..|++||.+........... .+..  +......+
T Consensus        22 ~~g~v~v~d~~~~~~~~~-~~~~~v~~~~~spDg~~l~~~~~~~g~~v~v~d~~~~~~~~~~~~~~~v~~~~~spdg~~l  100 (360)
T d1k32a3          22 SRGQAFIQDVSGTYVLKV-PEPLRIRYVRRGGDTKVAFIHGTREGDFLGIYDYRTGKAEKFEENLGNVFAMGVDRNGKFA  100 (360)
T ss_dssp             ETTEEEEECTTSSBEEEC-SCCSCEEEEEECSSSEEEEEEEETTEEEEEEEETTTCCEEECCCCCCSEEEEEECTTSSEE
T ss_pred             ECCeEEEEECCCCcEEEc-cCCCCEEEEEECCCCCEEEEEEcCCCCEEEEEECCCCcEEEeeCCCceEEeeeeccccccc
Confidence            45667777532 223333 699999999999999999887655  37999998764332211111 1111  11111111


Q ss_pred             ---ccceeEEEEecCCCccceecccCCcceEEEEEeCCCCEEEe----------ecCCCeEEEEECCCCeeeeeeecCCC
Q 042146           77 ---SDLATIRLWDVPTATSLKTLIGHTNYVFCINFNPQSNRIVS----------DTFNETIRIWDIKTGKCLKVLPAHSD  143 (262)
Q Consensus        77 ---~~~~~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~----------~~~dg~i~vwd~~~~~~~~~~~~~~~  143 (262)
                         .....+++|+..+++....+..|...+.+++|+|++++|+.          +..++.+++||+.+++..... .+..
T Consensus       101 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~la~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~-~~~~  179 (360)
T d1k32a3         101 VVANDRFEIMTVDLETGKPTVIERSREAMITDFTISDNSRFIAYGFPLKHGETDGYVMQAIHVYDMEGRKIFAAT-TENS  179 (360)
T ss_dssp             EEEETTSEEEEEETTTCCEEEEEECSSSCCCCEEECTTSCEEEEEEEECSSTTCSCCEEEEEEEETTTTEEEECS-CSSS
T ss_pred             ceeccccccccccccccceeeeeecccccccchhhccceeeeeeeccccccceeeccccceeeeccccCceeeec-cccc
Confidence               11227999999999988888889999999999999999984          345567999999988765444 5677


Q ss_pred             CeeeEEEccCCCEEEEEeCCCeEEEEeCCC
Q 042146          144 PVTAIDFNRDGTMIVTSSYDGLYRILDAST  173 (262)
Q Consensus       144 ~v~~~~~~~~~~~l~~~~~dg~i~~~d~~~  173 (262)
                      .+..++|+|+|+.|++++.++.+.+||...
T Consensus       180 ~~~~~~~spdg~~l~~~s~~~~~~~~d~~~  209 (360)
T d1k32a3         180 HDYAPAFDADSKNLYYLSYRSLDPSPDRVV  209 (360)
T ss_dssp             BEEEEEECTTSCEEEEEESCCCCCEECSSS
T ss_pred             ccccccccCCCCEEEEEeCCCceEcccccc
Confidence            889999999999999999999999998654

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.96  E-value=6.1e-27  Score=178.10  Aligned_cols=140  Identities=34%  Similarity=0.617  Sum_probs=123.3

Q ss_pred             cCCcceEEEEEeCCCCEEEeecCCCeEEEEECCCCeeeeeeecCCCCeeeEEEccCCCEEEEEeCCCeEEEEeCCC----
Q 042146           98 GHTNYVFCINFNPQSNRIVSDTFNETIRIWDIKTGKCLKVLPAHSDPVTAIDFNRDGTMIVTSSYDGLYRILDAST----  173 (262)
Q Consensus        98 ~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~d~~~----  173 (262)
                      .|...+.++.++|+++.+++++.|+.+++||+++++.+..+..|...+.+++|+|++.+|++++.|+.|++|++..    
T Consensus        99 ~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~v~~~~~~~~~~~  178 (317)
T d1vyhc1          99 GHDHNVSSVSIMPNGDHIVSASRDKTIKMWEVQTGYCVKTFTGHREWVRMVRPNQDGTLIASCSNDQTVRVWVVATKECK  178 (317)
T ss_dssp             CCSSCEEEEEECSSSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEE
T ss_pred             cccccceeeeccCCCceEEeeccCcceeEeecccceeeeEEccCCCcceeeecccCCCEEEEEeCCCeEEEEeeccceee
Confidence            3444455555666667788888899999999999999999999999999999999999999999999999999875    


Q ss_pred             ------------------------------------CCccEEEEEcCCCeEEEEecCCCceeeEEeccCCceeEEEEEEe
Q 042146          174 ------------------------------------PNGKFILVGTLDNTLRLWNYSTRKILKTYSGYTNSKYCISSTFS  217 (262)
Q Consensus       174 ------------------------------------~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~  217 (262)
                                                          ..+.++++++.|+.|++||+++++++..+.+             
T Consensus       179 ~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~-------------  245 (317)
T d1vyhc1         179 AELREHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCLMTLVG-------------  245 (317)
T ss_dssp             EEECCCSSCEEEEEECCSCGGGGGGGCCSCC-------CCEEEEEETTSEEEEEETTTTEEEEEEEC-------------
T ss_pred             EEEecCCCCceEEEEeeccccceeeccccceeeeeccCCceeEeccCCCEEEEEECCCCcEEEEEeC-------------
Confidence                                                3467899999999999999999999999887             


Q ss_pred             cCCCeeEEccccceEEEEEcCCCCeEEEeeecCCCcEEEEeecc
Q 042146          218 VTNGKYIVSHRDPVISVASHPAKNIIASGALDNDRTMKIWTQEK  261 (262)
Q Consensus       218 ~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~d~d~~i~iw~~~~  261 (262)
                               |...|.+++|+|++++|++++  .||.|++||+++
T Consensus       246 ---------~~~~v~~~~~~~~~~~l~s~~--~dg~i~iwd~~~  278 (317)
T d1vyhc1         246 ---------HDNWVRGVLFHSGGKFILSCA--DDKTLRVWDYKN  278 (317)
T ss_dssp             ---------CSSCEEEEEECSSSSCEEEEE--TTTEEEEECCTT
T ss_pred             ---------CCCCEEEEEECCCCCEEEEEE--CCCeEEEEECCC
Confidence                     888999999999999999999  899999999864

>d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD-repeat protein 1 (beta-TRCP1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.95  E-value=2.1e-26  Score=173.35  Aligned_cols=180  Identities=27%  Similarity=0.515  Sum_probs=111.7

Q ss_pred             ccceecccCcCceEEEEEccCCCeEEEecCCCeEEEeecCCCCCCCCCCCCCCccccCCccccccceeEEEEecCCCccc
Q 042146           14 TLTQTLNGHLRAVSYVKFSHDGRLLTSSSAEKTLLTYSLSSISNFDSTPPSPLQKFTGHEQGISDLATIRLWDVPTATSL   93 (262)
Q Consensus        14 ~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~i~v~d~~~~~~~   93 (262)
                      +.++...+|...|+|++|  ++++||||+.||+|+|||++                                   +++++
T Consensus         6 ~~i~~~~~~~~~V~c~~~--d~~~l~sgs~Dg~i~vWd~~-----------------------------------~~~~~   48 (293)
T d1p22a2           6 QRIHCRSETSKGVYCLQY--DDQKIVSGLRDNTIKIWDKN-----------------------------------TLECK   48 (293)
T ss_dssp             CCEECCCSSCCCEEEEEC--CSSEEEEEESSSCEEEEESS-----------------------------------SCCEE
T ss_pred             EEEeccCCCCCCEEEEEE--cCCEEEEEeCCCeEEEEECC-----------------------------------CCcEE
Confidence            344556788899999765  78999999999999999664                                   34444


Q ss_pred             eecccCCcceEEEEEeCCCCEEEeecCCCeEEEEECCCCeeeeee-----------------------------------
Q 042146           94 KTLIGHTNYVFCINFNPQSNRIVSDTFNETIRIWDIKTGKCLKVL-----------------------------------  138 (262)
Q Consensus        94 ~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~-----------------------------------  138 (262)
                      ..+.+|...|.+++|  ++++|++|+.|+.|++|+++.+......                                   
T Consensus        49 ~~l~~H~~~V~~v~~--~~~~l~s~s~D~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  126 (293)
T d1p22a2          49 RILTGHTGSVLCLQY--DERVIITGSSDSTVRVWDVNTGEMLNTLIHHCEAVLHLRFNNGMMVTCSKDRSIAVWDMASPT  126 (293)
T ss_dssp             EEECCCSSCEEEEEC--CSSEEEEEETTSCEEEEESSSCCEEEEECCCCSCEEEEECCTTEEEEEETTSCEEEEECSSSS
T ss_pred             EEEecCCCCEeeeec--ccceeecccccccccccccccccccccccccccccccccccccceeecccccceeEeeccccc
Confidence            555555555555544  3455555555555555555544333332                                   


Q ss_pred             --------ecCCCCeeeEEEccCCCEEEEEeCCCeEEEEeCCC------------------CCccEEEEEcCCCeEEEEe
Q 042146          139 --------PAHSDPVTAIDFNRDGTMIVTSSYDGLYRILDAST------------------PNGKFILVGTLDNTLRLWN  192 (262)
Q Consensus       139 --------~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~d~~~------------------~~~~~l~~~~~dg~i~i~d  192 (262)
                              ..|...+..+.+.  ...+++++.|+.+++||++.                  +++.++++++.||.|++||
T Consensus       127 ~~~~~~~~~~~~~~v~~~~~~--~~~~~~~s~d~~i~~~d~~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~dg~i~i~d  204 (293)
T d1p22a2         127 DITLRRVLVGHRAAVNVVDFD--DKYIVSASGDRTIKVWNTSTCEFVRTLNGHKRGIACLQYRDRLVVSGSSDNTIRLWD  204 (293)
T ss_dssp             CCEEEEEECCCSSCEEEEEEE--TTEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEEETTEEEEEETTSCEEEEE
T ss_pred             cccccccccccccccccceec--ccccccccCCCceeeecCCCCcEEEEEcccccccccccCCCCeEEEecCCCEEEEEe
Confidence                    2344444443333  33455555555555555544                  2344555555566666666


Q ss_pred             cCCCceeeEEeccCCceeEEEEEEecCCCeeEEccccceEEEEEcCCCCeEEEeeecCCCcEEEEeec
Q 042146          193 YSTRKILKTYSGYTNSKYCISSTFSVTNGKYIVSHRDPVISVASHPAKNIIASGALDNDRTMKIWTQE  260 (262)
Q Consensus       193 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~d~d~~i~iw~~~  260 (262)
                      +++.+.+..+..                      +...+..  +++++.+|++++  .||.|++|++.
T Consensus       205 ~~~~~~~~~~~~----------------------~~~~v~~--~~~~~~~l~sg~--~dg~i~iwd~~  246 (293)
T d1p22a2         205 IECGACLRVLEG----------------------HEELVRC--IRFDNKRIVSGA--YDGKIKVWDLV  246 (293)
T ss_dssp             TTTCCEEEEECC----------------------CSSCEEE--EECCSSEEEEEE--TTSCEEEEEHH
T ss_pred             cccceeeeeecc----------------------cceeeee--ccccceEEEEEc--CCCEEEEEECC
Confidence            555555555443                      5555554  556788999999  89999999974

>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: Cell cycle arrest protein BUB3
domain: Cell cycle arrest protein BUB3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.94  E-value=6.9e-26  Score=173.84  Aligned_cols=233  Identities=15%  Similarity=0.112  Sum_probs=161.8

Q ss_pred             CCCCceeeecc--cc---cceecccCcCceEEEEEccCC-CeEEEecCCCeEEEeecCCCCCCCCCCCC--CC--cc-cc
Q 042146            2 SSDRSLESFRP--YT---LTQTLNGHLRAVSYVKFSHDG-RLLTSSSAEKTLLTYSLSSISNFDSTPPS--PL--QK-FT   70 (262)
Q Consensus         2 s~d~~i~~~~~--~~---~~~~~~~h~~~v~~~~~~~~~-~~l~s~~~d~~i~iw~~~~~~~~~~~~~~--~~--~~-~~   70 (262)
                      |.|++|+.|+-  ..   ......+|.++|.+++|+|++ .+|++|+.||.|++|++............  ..  .. ..
T Consensus        30 s~Dg~v~iwd~~~~~~~~~~~~~~~h~~~V~~v~f~~~~~~~l~sg~~d~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~  109 (342)
T d1yfqa_          30 SWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCCNFIDNTDLQIYVGTVQGEILKVDLIGSPSFQALTNNEANLGICRICK  109 (342)
T ss_dssp             ETTSEEEEEEEETTTTEEEEEEEEECSSCEEEEEEEESSSEEEEEEETTSCEEEECSSSSSSEEECBSCCCCSCEEEEEE
T ss_pred             ECCCeEEEEEccCCCcceEEEEecCCCCCEEEEEEeCCCCCEEEEcccccceeeeecccccccccccccccccccccccc
Confidence            47999999862  11   223334699999999999874 58999999999999998764332111110  00  00 01


Q ss_pred             CCcc---ccccceeEEEEecCCCccceec----cc--CCcceEEEEEeCCCCEEEeecCCCeEEEEECCCCeeeee---e
Q 042146           71 GHEQ---GISDLATIRLWDVPTATSLKTL----IG--HTNYVFCINFNPQSNRIVSDTFNETIRIWDIKTGKCLKV---L  138 (262)
Q Consensus        71 ~~~~---~v~~~~~i~v~d~~~~~~~~~~----~~--~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~---~  138 (262)
                      ....   .......+++||++.+......    ..  .......+.+.+.++.+++++.|+.|++||++..+....   .
T Consensus       110 ~~~~~~~~~~~~~~~~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~~  189 (342)
T d1yfqa_         110 YGDDKLIAASWDGLIEVIDPRNYGDGVIAVKNLNSNNTKVKNKIFTMDTNSSRLIVGMNNSQVQWFRLPLCEDDNGTIEE  189 (342)
T ss_dssp             ETTTEEEEEETTSEEEEECHHHHTTBCEEEEESCSSSSSSCCCEEEEEECSSEEEEEESTTEEEEEESSCCTTCCCEEEE
T ss_pred             cccccccccccccccceeeccccccceeeecccccccccceeeeeeeeccCCceeeecCCCcEEEEecccCcccceeeee
Confidence            0111   1122338999998655433222    22  223445667788899999999999999999986654322   2


Q ss_pred             ecCCCCeeeEEEcc-CCCEEEEEeCCCeEEEEeCCC-----------------------------------CCccEEEEE
Q 042146          139 PAHSDPVTAIDFNR-DGTMIVTSSYDGLYRILDAST-----------------------------------PNGKFILVG  182 (262)
Q Consensus       139 ~~~~~~v~~~~~~~-~~~~l~~~~~dg~i~~~d~~~-----------------------------------~~~~~l~~~  182 (262)
                      ..+...+.+..+.+ ++..+++++.||.+.+|+...                                   |++++|++|
T Consensus       190 ~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~lasg  269 (342)
T d1yfqa_         190 SGLKYQIRDVALLPKEQEGYACSSIDGRVAVEFFDDQGDDYNSSKRFAFRCHRLNLKDTNLAYPVNSIEFSPRHKFLYTA  269 (342)
T ss_dssp             CSCSSCEEEEEECSGGGCEEEEEETTSEEEEEECCTTCCSTTCTTCEEEECCCCCTTCCSSCCCEEEEEECTTTCCEEEE
T ss_pred             cccccceeeeEeecCCCCEEEeecCCCeEEEEEecCCcceeeccccceeeeeeeccCCCcccccceeEEecCCccEEEEE
Confidence            23444566666655 678999999999999998653                                   688999999


Q ss_pred             cCCCeEEEEecCCCceeeEEeccCCceeEEEEEEecCCCeeEEccccceEEEEEcCCCCeEEEeeecCCCcEEEEee
Q 042146          183 TLDNTLRLWNYSTRKILKTYSGYTNSKYCISSTFSVTNGKYIVSHRDPVISVASHPAKNIIASGALDNDRTMKIWTQ  259 (262)
Q Consensus       183 ~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~d~d~~i~iw~~  259 (262)
                      +.||.|++||+++++.+..+..                       ...+..++|+|++++|++++  .|+.+++|..
T Consensus       270 ~~Dg~v~vWD~~~~~~l~~~~~-----------------------~~~~~~~~~s~~~~~l~~a~--sdd~~~~~~~  321 (342)
T d1yfqa_         270 GSDGIISCWNLQTRKKIKNFAK-----------------------FNEDSVVKIACSDNILCLAT--SDDTFKTNAA  321 (342)
T ss_dssp             ETTSCEEEEETTTTEEEEECCC-----------------------CSSSEEEEEEECSSEEEEEE--ECTHHHHCSS
T ss_pred             CCCCEEEEEECCCCcEEEEecC-----------------------CCCCEEEEEEeCCCEEEEEE--cCCcEEEeee
Confidence            9999999999999999888763                       23455678888999999998  6677766654

>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.94  E-value=3.6e-25  Score=170.06  Aligned_cols=166  Identities=27%  Similarity=0.510  Sum_probs=136.4

Q ss_pred             EecCCCccceecccCCcceEEEEEeCCCCEEEeecCCCeEEEEECCCCeeeeeeecCCCCeeeEEEccCCCEEEEEeCCC
Q 042146           85 WDVPTATSLKTLIGHTNYVFCINFNPQSNRIVSDTFNETIRIWDIKTGKCLKVLPAHSDPVTAIDFNRDGTMIVTSSYDG  164 (262)
Q Consensus        85 ~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg  164 (262)
                      |+..+.++...+++|.+.|.+ +++++|++|++|+.||+|+|||+++++++..+.+|.+.|.+++|+|+  +|++++.|+
T Consensus         1 W~~~~~~~~~~l~GH~~~V~s-~~~~~g~~l~sgs~Dg~i~vWd~~~~~~~~~~~~h~~~V~~v~~~~~--~l~s~s~D~   77 (342)
T d2ovrb2           1 WRRGELKSPKVLKGHDDHVIT-CLQFCGNRIVSGSDDNTLKVWSAVTGKCLRTLVGHTGGVWSSQMRDN--IIISGSTDR   77 (342)
T ss_dssp             HHHSCCCCCEEEECSTTSCEE-EEEEETTEEEEEETTSCEEEEETTTCCEEEECCCCSSCEEEEEEETT--EEEEEETTS
T ss_pred             CCCCCCCcCEEECCcCCceEE-EEEECCCEEEEEeCCCeEEEEECCCCCEEEEEeCCCCCEEEEEeCCC--ccccceecc
Confidence            455566777889999998865 46667999999999999999999999999999999999999999874  999999999


Q ss_pred             eEEEEeCCC-----------------------------------------------------------------------
Q 042146          165 LYRILDAST-----------------------------------------------------------------------  173 (262)
Q Consensus       165 ~i~~~d~~~-----------------------------------------------------------------------  173 (262)
                      .+++|+...                                                                       
T Consensus        78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~  157 (342)
T d2ovrb2          78 TLKVWNAETGECIHTLYGHTSTVRCMHLHEKRVVSGSRDATLRVWDIETGQCLHVLMGHVAAVRCVQYDGRRVVSGAYDF  157 (342)
T ss_dssp             CEEEEETTTTEEEEEECCCSSCEEEEEEETTEEEEEETTSEEEEEESSSCCEEEEEECCSSCEEEEEECSSCEEEEETTS
T ss_pred             cccccccccccceecccccceeEeeeecccccccccccceeEEEeecccccceeeeecccccceeeccccceeeeecCCC
Confidence            999999765                                                                       


Q ss_pred             ---------------------------CCccEEEEEcCCCeEEEEecCCCceeeEEeccCCceeEEEEEEecCCCeeEEc
Q 042146          174 ---------------------------PNGKFILVGTLDNTLRLWNYSTRKILKTYSGYTNSKYCISSTFSVTNGKYIVS  226 (262)
Q Consensus       174 ---------------------------~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  226 (262)
                                                 +++.++++|+.||.|++||++.++++..+..|...+.++...    +..++.+
T Consensus       158 ~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~~~d~~~~~~~~~~~~~~~~v~~~~~~----~~~l~s~  233 (342)
T d2ovrb2         158 MVKVWDPETETCLHTLQGHTNRVYSLQFDGIHVVSGSLDTSIRVWDVETGNCIHTLTGHQSLTSGMELK----DNILVSG  233 (342)
T ss_dssp             CEEEEEGGGTEEEEEECCCSSCEEEEEECSSEEEEEETTSCEEEEETTTCCEEEEECCCCSCEEEEEEE----TTEEEEE
T ss_pred             eEEEeecccceeeEEEcCcccccccccCCCCEEEEEeCCCeEEEeecccceeeeEecccccceeEEecC----CCEEEEE
Confidence                                       467889999999999999999999999998888776655421    1222222


Q ss_pred             -------------------------cccceEEEEEcCCCCeEEEeeecCCCcEEEEeecc
Q 042146          227 -------------------------HRDPVISVASHPAKNIIASGALDNDRTMKIWTQEK  261 (262)
Q Consensus       227 -------------------------~~~~v~~~~~~p~~~~l~~~~~d~d~~i~iw~~~~  261 (262)
                                               |...+.++.++  ++++++|+  .||.|++||+++
T Consensus       234 s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~s~s--~Dg~i~iwd~~t  289 (342)
T d2ovrb2         234 NADSTVKIWDIKTGQCLQTLQGPNKHQSAVTCLQFN--KNFVITSS--DDGTVKLWDLKT  289 (342)
T ss_dssp             ETTSCEEEEETTTCCEEEEECSTTSCSSCEEEEEEC--SSEEEEEE--TTSEEEEEETTT
T ss_pred             cCCCEEEEEecccccccccccccceeeeceeecccC--CCeeEEEc--CCCEEEEEECCC
Confidence                                     45566666665  56899999  899999999864

>d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.92  E-value=3.6e-24  Score=161.48  Aligned_cols=187  Identities=14%  Similarity=0.150  Sum_probs=138.4

Q ss_pred             CCCCceeeecccccceecccCcCceEEEEEccCCCeEEEecCCCeEEEeecCCCCCCC----------------------
Q 042146            2 SSDRSLESFRPYTLTQTLNGHLRAVSYVKFSHDGRLLTSSSAEKTLLTYSLSSISNFD----------------------   59 (262)
Q Consensus         2 s~d~~i~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~----------------------   59 (262)
                      +.||+|..|+..+   ..++|...|.++++++++ .+++++.|+++++|++.......                      
T Consensus        28 s~Dg~v~~Wd~~~---~~~~h~~~V~~~~~~~~~-~~~s~s~D~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  103 (287)
T d1pgua2          28 SYDGRIMEWSSSS---MHQDHSNLIVSLDNSKAQ-EYSSISWDDTLKVNGITKHEFGSQPKVASANNDGFTAVLTNDDDL  103 (287)
T ss_dssp             ETTSCEEETTTTE---EECCCCSCEEEEECCSTT-CCEEEETTTEEEETTEEEEECSSCEEEEEECSSSEEEEEETTSEE
T ss_pred             eCCCeEEEEECCC---CCCCCCCCEEEEEecCCC-eEEEEeeccccccccccccccccceeeeeeccCCceEEEeecccc
Confidence            4799999998654   346899999999998765 58999999999999875421100                      


Q ss_pred             ----CCCCCCCccccCCc---------ccc--c--cceeEEEEecCCCccceecc-cCCcceEEEEEeCCCCEEEeecCC
Q 042146           60 ----STPPSPLQKFTGHE---------QGI--S--DLATIRLWDVPTATSLKTLI-GHTNYVFCINFNPQSNRIVSDTFN  121 (262)
Q Consensus        60 ----~~~~~~~~~~~~~~---------~~v--~--~~~~i~v~d~~~~~~~~~~~-~~~~~v~~~~~~~~~~~l~~~~~d  121 (262)
                          .........+....         ..+  .  ....+++|++...+....+. .|...+++++|+|++.+|++|+.|
T Consensus       104 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~v~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~g~~d  183 (287)
T d1pgua2         104 LILQSFTGDIIKSVRLNSPGSAVSLSQNYVAVGLEEGNTIQVFKLSDLEVSFDLKTPLRAKPSYISISPSETYIAAGDVM  183 (287)
T ss_dssp             EEEETTTCCEEEEEECSSCEEEEEECSSEEEEEETTTSCEEEEETTEEEEEEECSSCCSSCEEEEEECTTSSEEEEEETT
T ss_pred             eeeeccceeeeeeccccceeeeeeccCcceeeeccccceeeeeeccccceeeeeeeccCCceeEEEeccCcccccccccc
Confidence                00000011111000         000  0  01168999987665555443 477889999999999999999999


Q ss_pred             CeEEEEECCCCeeee-eeecCCCCeeeEEEccC----------CCEEEEEeCCCeEEEEeCCC-----------------
Q 042146          122 ETIRIWDIKTGKCLK-VLPAHSDPVTAIDFNRD----------GTMIVTSSYDGLYRILDAST-----------------  173 (262)
Q Consensus       122 g~i~vwd~~~~~~~~-~~~~~~~~v~~~~~~~~----------~~~l~~~~~dg~i~~~d~~~-----------------  173 (262)
                      |.|++||+.+++... .+..|..+|.+++|+|.          +.+|++|+.|++|++||++.                 
T Consensus       184 g~i~i~d~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~~~~~~~~l~sgs~D~~i~iw~~~~~~~~~~~~~~h~~~V~~  263 (287)
T d1pgua2         184 GKILLYDLQSREVKTSRWAFRTSKINAISWKPAEKGANEEEIEEDLVATGSLDTNIFIYSVKRPMKIIKALNAHKDGVNN  263 (287)
T ss_dssp             SCEEEEETTTTEEEECCSCCCSSCEEEEEECCCC------CCSCCEEEEEETTSCEEEEESSCTTCCEEETTSSTTCEEE
T ss_pred             ccccceeecccccccccccccccccceeeecccccccccccCCCCeeEeecCCCeEEEEECCCCCeEEEEeCCCCCCeEE
Confidence            999999999887654 46789999999999874          46899999999999999865                 


Q ss_pred             ----CCccEEEEEcCCCeEEEEec
Q 042146          174 ----PNGKFILVGTLDNTLRLWNY  193 (262)
Q Consensus       174 ----~~~~~l~~~~~dg~i~i~d~  193 (262)
                          ++ ..|++++.|+.|++|++
T Consensus       264 v~~~~~-~~l~s~g~D~~v~iW~i  286 (287)
T d1pgua2         264 LLWETP-STLVSSGADACIKRWNV  286 (287)
T ss_dssp             EEEEET-TEEEEEETTSCEEEEEE
T ss_pred             EEECCC-CEEEEEECCCeEEEEEE
Confidence                44 46889999999999986

>d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: YVTN repeat
domain: Surface layer protein
species: Archaeon Methanosarcina mazei [TaxId: 2209]

Probab=99.91  E-value=2.6e-21  Score=146.18  Aligned_cols=232  Identities=14%  Similarity=0.190  Sum_probs=167.2

Q ss_pred             CCCCceeeec--ccccceecccCcCceEEEEEccCCCeE-EEecCCCeEEEeecCCCCCCCCCCCCC-Cc--cccCCccc
Q 042146            2 SSDRSLESFR--PYTLTQTLNGHLRAVSYVKFSHDGRLL-TSSSAEKTLLTYSLSSISNFDSTPPSP-LQ--KFTGHEQG   75 (262)
Q Consensus         2 s~d~~i~~~~--~~~~~~~~~~h~~~v~~~~~~~~~~~l-~s~~~d~~i~iw~~~~~~~~~~~~~~~-~~--~~~~~~~~   75 (262)
                      +.|++|..|+  +.+.+++++.. ..+..++|+|||++| ++++.++.|++||+.+........... ..  .+......
T Consensus         9 ~~~~~v~v~D~~t~~~~~~i~~g-~~p~~va~spdG~~l~v~~~~~~~i~v~d~~t~~~~~~~~~~~~~~~~~~~~~~~~   87 (301)
T d1l0qa2           9 SESDNISVIDVTSNKVTATIPVG-SNPMGAVISPDGTKVYVANAHSNDVSIIDTATNNVIATVPAGSSPQGVAVSPDGKQ   87 (301)
T ss_dssp             TTTTEEEEEETTTTEEEEEEECS-SSEEEEEECTTSSEEEEEEGGGTEEEEEETTTTEEEEEEECSSSEEEEEECTTSSE
T ss_pred             CCCCEEEEEECCCCeEEEEEECC-CCceEEEEeCCCCEEEEEECCCCEEEEEECCCCceeeeeecccccccccccccccc
Confidence            4578888886  56677777644 457899999999987 567789999999987653322111100 00  01111111


Q ss_pred             c----ccceeEEEEecCCCccceecccCCcceEEEEEeCCCCEEE-eecCCCeEEEEECCCCeeeeeeecCCCCeeeEEE
Q 042146           76 I----SDLATIRLWDVPTATSLKTLIGHTNYVFCINFNPQSNRIV-SDTFNETIRIWDIKTGKCLKVLPAHSDPVTAIDF  150 (262)
Q Consensus        76 v----~~~~~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~-~~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~  150 (262)
                      +    .....+.+|+..+++....+..+ ....++.++|+++.++ ++..++.+.+|+..+.+.+..+.. ...+..+++
T Consensus        88 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~dg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~  165 (301)
T d1l0qa2          88 VYVTNMASSTLSVIDTTSNTVAGTVKTG-KSPLGLALSPDGKKLYVTNNGDKTVSVINTVTKAVINTVSV-GRSPKGIAV  165 (301)
T ss_dssp             EEEEETTTTEEEEEETTTTEEEEEEECS-SSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEEC-CSSEEEEEE
T ss_pred             ccccccccceeeecccccceeeeecccc-ccceEEEeecCCCeeeeeeccccceeeeeccccceeeeccc-CCCceEEEe
Confidence            1    11127899999988877777644 5678899999998764 566788999999999998888764 455789999


Q ss_pred             ccCCCEEEEEeCC-CeEEEEeCCC-------------------CCccEEEEEc---CCCeEEEEecCCCceeeEEeccCC
Q 042146          151 NRDGTMIVTSSYD-GLYRILDAST-------------------PNGKFILVGT---LDNTLRLWNYSTRKILKTYSGYTN  207 (262)
Q Consensus       151 ~~~~~~l~~~~~d-g~i~~~d~~~-------------------~~~~~l~~~~---~dg~i~i~d~~~~~~~~~~~~~~~  207 (262)
                      +|++..+++++.+ +.+.+|+...                   ++++.++++.   .++.|++||+.+++.+..+.    
T Consensus       166 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~v~~~~~~~~~v~v~D~~t~~~~~~~~----  241 (301)
T d1l0qa2         166 TPDGTKVYVANFDSMSISVIDTVTNSVIDTVKVEAAPSGIAVNPEGTKAYVTNVDKYFNTVSMIDTGTNKITARIP----  241 (301)
T ss_dssp             CTTSSEEEEEETTTTEEEEEETTTTEEEEEEECSSEEEEEEECTTSSEEEEEEECSSCCEEEEEETTTTEEEEEEE----
T ss_pred             eccccceeeecccccccccccccceeeeecccccCCcceeeccccccccccccccceeeeeeeeecCCCeEEEEEc----
Confidence            9999988877765 5666776654                   6677665543   34689999999999988876    


Q ss_pred             ceeEEEEEEecCCCeeEEccccceEEEEEcCCCCeE-EEeeecCCCcEEEEeecc
Q 042146          208 SKYCISSTFSVTNGKYIVSHRDPVISVASHPAKNII-ASGALDNDRTMKIWTQEK  261 (262)
Q Consensus       208 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l-~~~~~d~d~~i~iw~~~~  261 (262)
                                         +...+.+++|+|+|++| ++++  .|+.|++||+++
T Consensus       242 -------------------~~~~~~~va~spdg~~l~va~~--~~~~i~v~D~~t  275 (301)
T d1l0qa2         242 -------------------VGPDPAGIAVTPDGKKVYVALS--FCNTVSVIDTAT  275 (301)
T ss_dssp             -------------------CCSSEEEEEECTTSSEEEEEET--TTTEEEEEETTT
T ss_pred             -------------------CCCCEEEEEEeCCCCEEEEEEC--CCCeEEEEECCC
Confidence                               44567899999999977 4666  689999999864

>d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Tricorn protease domain 2
family: Tricorn protease domain 2
domain: Tricorn protease domain 2
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=99.91  E-value=5.3e-23  Score=159.40  Aligned_cols=169  Identities=17%  Similarity=0.164  Sum_probs=136.9

Q ss_pred             EEEEcc-CCCeEEEecCCCeEEEeecCCCCCCCCCCCCCCccccCCccccccceeEEEEecCCCccceecccCCcceEEE
Q 042146           28 YVKFSH-DGRLLTSSSAEKTLLTYSLSSISNFDSTPPSPLQKFTGHEQGISDLATIRLWDVPTATSLKTLIGHTNYVFCI  106 (262)
Q Consensus        28 ~~~~~~-~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~i~v~d~~~~~~~~~~~~~~~~v~~~  106 (262)
                      .-.||| ||+++|+++. |.|++||+                                   ..+...+ + .|...|.++
T Consensus         7 ~~~fSP~dG~~~a~~~~-g~v~v~d~-----------------------------------~~~~~~~-~-~~~~~v~~~   48 (360)
T d1k32a3           7 AEDFSPLDGDLIAFVSR-GQAFIQDV-----------------------------------SGTYVLK-V-PEPLRIRYV   48 (360)
T ss_dssp             EEEEEECGGGCEEEEET-TEEEEECT-----------------------------------TSSBEEE-C-SCCSCEEEE
T ss_pred             cccccCCCCCEEEEEEC-CeEEEEEC-----------------------------------CCCcEEE-c-cCCCCEEEE
Confidence            467999 9999999874 67777754                                   3344333 3 588899999


Q ss_pred             EEeCCCCEEEeecCCC--eEEEEECCCCeeeeeeecCCCCeeeEEEccCCCEEEEEeCCCeEEEEeCCC-----------
Q 042146          107 NFNPQSNRIVSDTFNE--TIRIWDIKTGKCLKVLPAHSDPVTAIDFNRDGTMIVTSSYDGLYRILDAST-----------  173 (262)
Q Consensus       107 ~~~~~~~~l~~~~~dg--~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~d~~~-----------  173 (262)
                      +|+|||++|++++.+.  .|++||+++++.. .+..|...+.+++|+|++++|++++.++.+.+|++..           
T Consensus        49 ~~spDg~~l~~~~~~~g~~v~v~d~~~~~~~-~~~~~~~~v~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~  127 (360)
T d1k32a3          49 RRGGDTKVAFIHGTREGDFLGIYDYRTGKAE-KFEENLGNVFAMGVDRNGKFAVVANDRFEIMTVDLETGKPTVIERSRE  127 (360)
T ss_dssp             EECSSSEEEEEEEETTEEEEEEEETTTCCEE-ECCCCCCSEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECSS
T ss_pred             EECCCCCEEEEEEcCCCCEEEEEECCCCcEE-EeeCCCceEEeeeecccccccceeccccccccccccccceeeeeeccc
Confidence            9999999988766543  7999999887754 5567999999999999999999999999999999876           


Q ss_pred             ---------CCccEEEEEc----------CCCeEEEEecCCCceeeEEeccCCceeEEEEEEecCCCeeEEccccceEEE
Q 042146          174 ---------PNGKFILVGT----------LDNTLRLWNYSTRKILKTYSGYTNSKYCISSTFSVTNGKYIVSHRDPVISV  234 (262)
Q Consensus       174 ---------~~~~~l~~~~----------~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~  234 (262)
                               |++++|+.+.          .++.+++||+.+++......                       +...+..+
T Consensus       128 ~~~~~~~~spdg~~la~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~-----------------------~~~~~~~~  184 (360)
T d1k32a3         128 AMITDFTISDNSRFIAYGFPLKHGETDGYVMQAIHVYDMEGRKIFAATT-----------------------ENSHDYAP  184 (360)
T ss_dssp             SCCCCEEECTTSCEEEEEEEECSSTTCSCCEEEEEEEETTTTEEEECSC-----------------------SSSBEEEE
T ss_pred             ccccchhhccceeeeeeeccccccceeeccccceeeeccccCceeeecc-----------------------cccccccc
Confidence                     7888888543          44568899998876654433                       66778899


Q ss_pred             EEcCCCCeEEEeeecCCCcEEEEeec
Q 042146          235 ASHPAKNIIASGALDNDRTMKIWTQE  260 (262)
Q Consensus       235 ~~~p~~~~l~~~~~d~d~~i~iw~~~  260 (262)
                      +|+|+|+.|++++  .++.+++|+..
T Consensus       185 ~~spdg~~l~~~s--~~~~~~~~d~~  208 (360)
T d1k32a3         185 AFDADSKNLYYLS--YRSLDPSPDRV  208 (360)
T ss_dssp             EECTTSCEEEEEE--SCCCCCEECSS
T ss_pred             cccCCCCEEEEEe--CCCceEccccc
Confidence            9999999999999  89999999853

>d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.91  E-value=8.5e-23  Score=162.56  Aligned_cols=171  Identities=12%  Similarity=0.037  Sum_probs=119.7

Q ss_pred             CCCCceeeec--ccccceecccCcCceEEEEEccCCCeEEEecCCCeEEEeecCCCCCCCCC-----C-CCCCc---ccc
Q 042146            2 SSDRSLESFR--PYTLTQTLNGHLRAVSYVKFSHDGRLLTSSSAEKTLLTYSLSSISNFDST-----P-PSPLQ---KFT   70 (262)
Q Consensus         2 s~d~~i~~~~--~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~-----~-~~~~~---~~~   70 (262)
                      +.|+++..|+  +++.+..+..| ..+..++|||||+++++++.|++|++||+.+.......     . +....   .+.
T Consensus        39 ~d~g~v~v~D~~t~~v~~~~~~g-~~~~~v~fSpDG~~l~~~s~dg~v~~~d~~t~~~~~~~~i~~~~~~~~~~~s~~~S  117 (432)
T d1qksa2          39 RDAGQIALIDGSTYEIKTVLDTG-YAVHISRLSASGRYLFVIGRDGKVNMIDLWMKEPTTVAEIKIGSEARSIETSKMEG  117 (432)
T ss_dssp             TTTTEEEEEETTTCCEEEEEECS-SCEEEEEECTTSCEEEEEETTSEEEEEETTSSSCCEEEEEECCSEEEEEEECCSTT
T ss_pred             cCCCEEEEEECCCCcEEEEEeCC-CCeeEEEECCCCCEEEEEcCCCCEEEEEeeCCCceEEEEEecCCCCCCeEEecccC
Confidence            4578888885  67899999877 46999999999999999999999999998764321100     0 00000   011


Q ss_pred             CCcccc----ccceeEEEEecCCCccceeccc-----------CCcceEEEEEeCCCCEE-EeecCCCeEEEEECCCCee
Q 042146           71 GHEQGI----SDLATIRLWDVPTATSLKTLIG-----------HTNYVFCINFNPQSNRI-VSDTFNETIRIWDIKTGKC  134 (262)
Q Consensus        71 ~~~~~v----~~~~~i~v~d~~~~~~~~~~~~-----------~~~~v~~~~~~~~~~~l-~~~~~dg~i~vwd~~~~~~  134 (262)
                      .....+    .....|++||..+++.+..+..           +......+.++|++..+ ++...++.|.+||..+.+.
T Consensus       118 pDG~~l~vs~~~~~~v~i~d~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~s~dg~~~~vs~~~~~~i~~~d~~~~~~  197 (432)
T d1qksa2         118 WEDKYAIAGAYWPPQYVIMDGETLEPKKIQSTRGMTYDEQEYHPEPRVAAILASHYRPEFIVNVKETGKILLVDYTDLNN  197 (432)
T ss_dssp             CTTTEEEEEEEETTEEEEEETTTCCEEEEEECCEECTTTCCEESCCCEEEEEECSSSSEEEEEETTTTEEEEEETTCSSE
T ss_pred             CCCCEEEEEcCCCCeEEEEeCccccceeeeccCCccccceeccCCCceeEEEECCCCCEEEEEEccCCeEEEEEccCCCc
Confidence            011111    1123899999999988766543           33456678899988875 5667789999999987765


Q ss_pred             eeeee-cCCCCeeeEEEccCCCEEEEEe-CCCeEEEEeCCC
Q 042146          135 LKVLP-AHSDPVTAIDFNRDGTMIVTSS-YDGLYRILDAST  173 (262)
Q Consensus       135 ~~~~~-~~~~~v~~~~~~~~~~~l~~~~-~dg~i~~~d~~~  173 (262)
                      ..... .+...+..++|+|+|+++++++ .++.+.++|...
T Consensus       198 ~~~~~i~~g~~~~~~~~spdg~~~~va~~~~~~v~v~d~~~  238 (432)
T d1qksa2         198 LKTTEISAERFLHDGGLDGSHRYFITAANARNKLVVIDTKE  238 (432)
T ss_dssp             EEEEEEECCSSEEEEEECTTSCEEEEEEGGGTEEEEEETTT
T ss_pred             ceEEEEcccCccccceECCCCCEEEEeccccceEEEeeccc
Confidence            43322 3456789999999999877776 456788888765

>d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.89  E-value=1.1e-21  Score=150.33  Aligned_cols=134  Identities=14%  Similarity=0.216  Sum_probs=98.7

Q ss_pred             CCCCceeeec--ccccceecccC--cCceEEEEEccCCCeE-EEecCCCeEEEeecCCCCCCCCCCCCCCccccCCcccc
Q 042146            2 SSDRSLESFR--PYTLTQTLNGH--LRAVSYVKFSHDGRLL-TSSSAEKTLLTYSLSSISNFDSTPPSPLQKFTGHEQGI   76 (262)
Q Consensus         2 s~d~~i~~~~--~~~~~~~~~~h--~~~v~~~~~~~~~~~l-~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v   76 (262)
                      +.|++|..|+  +.+.+..+..+  ...+.+++|+|||+++ ++++.++.|.+||+.                       
T Consensus         8 ~~d~~v~v~D~~s~~~~~~i~~~~~~~~~~~i~~spDg~~l~v~~~~~~~v~v~D~~-----------------------   64 (337)
T d1pbyb_           8 ARPDKLVVIDTEKMAVDKVITIADAGPTPMVPMVAPGGRIAYATVNKSESLVKIDLV-----------------------   64 (337)
T ss_dssp             ETTTEEEEEETTTTEEEEEEECTTCTTCCCCEEECTTSSEEEEEETTTTEEEEEETT-----------------------
T ss_pred             cCCCEEEEEECCCCeEEEEEECCCCCCCccEEEECCCCCEEEEEECCCCeEEEEECC-----------------------
Confidence            4678888875  55677777543  4567899999999987 566788998888664                       


Q ss_pred             ccceeEEEEecCCCccceecccC-----CcceEEEEEeCCCCEEEeec------------CCCeEEEEECCCCeeeeeee
Q 042146           77 SDLATIRLWDVPTATSLKTLIGH-----TNYVFCINFNPQSNRIVSDT------------FNETIRIWDIKTGKCLKVLP  139 (262)
Q Consensus        77 ~~~~~i~v~d~~~~~~~~~~~~~-----~~~v~~~~~~~~~~~l~~~~------------~dg~i~vwd~~~~~~~~~~~  139 (262)
                                  +++.+..+..+     ...+..++++|++++++++.            .++.+.+||..+++....+.
T Consensus        65 ------------t~~~~~~~~~~~~~~~~~~~~~v~~s~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~  132 (337)
T d1pbyb_          65 ------------TGETLGRIDLSTPEERVKSLFGAALSPDGKTLAIYESPVRLELTHFEVQPTRVALYDAETLSRRKAFE  132 (337)
T ss_dssp             ------------TCCEEEEEECCBTTEEEECTTCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEETTTTEEEEEEE
T ss_pred             ------------CCcEEEEEecCCCcccccceeeEEEcCCCcEEEEeecCCcceeeeccccccceeeccccCCeEEEecc
Confidence                        33333333222     22345689999999988765            46789999999999888876


Q ss_pred             cCCCCeeeEEEccCCCEEEEEeCCCeEEEEeCCC
Q 042146          140 AHSDPVTAIDFNRDGTMIVTSSYDGLYRILDAST  173 (262)
Q Consensus       140 ~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~d~~~  173 (262)
                      . ...+..++|+|+++++++++.+  +.+||...
T Consensus       133 ~-~~~~~~~~~s~dg~~l~~~~~~--~~~~d~~~  163 (337)
T d1pbyb_         133 A-PRQITMLAWARDGSKLYGLGRD--LHVMDPEA  163 (337)
T ss_dssp             C-CSSCCCEEECTTSSCEEEESSS--EEEEETTT
T ss_pred             c-cCCceEEEEcCCCCEEEEEcCC--cceeeeec
Confidence            4 5668899999999999998755  56777654

>d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=99.88  E-value=9.9e-22  Score=156.27  Aligned_cols=227  Identities=10%  Similarity=0.115  Sum_probs=152.2

Q ss_pred             CCCCceeeec--ccccceecccCcCceEEEEEccCCCeEEEecCCCeEEEeecCCCCCCCCCCCCCCccccCCccccccc
Q 042146            2 SSDRSLESFR--PYTLTQTLNGHLRAVSYVKFSHDGRLLTSSSAEKTLLTYSLSSISNFDSTPPSPLQKFTGHEQGISDL   79 (262)
Q Consensus         2 s~d~~i~~~~--~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~   79 (262)
                      +.||+|..|+  +.+.+.+++.|. .+..++|||||++|++++.|++|++||+.+.+.                      
T Consensus        39 ~~dg~v~vwD~~t~~~~~~l~~g~-~~~~vafSPDGk~l~~~~~d~~v~vwd~~t~~~----------------------   95 (426)
T d1hzua2          39 RDAGQIALVDGDSKKIVKVIDTGY-AVHISRMSASGRYLLVIGRDARIDMIDLWAKEP----------------------   95 (426)
T ss_dssp             TTTTEEEEEETTTCSEEEEEECCS-SEEEEEECTTSCEEEEEETTSEEEEEETTSSSC----------------------
T ss_pred             cCCCEEEEEECCCCcEEEEEeCCC-CeeEEEECCCCCEEEEEeCCCCEEEEEccCCce----------------------
Confidence            4578888886  677888998875 589999999999999999999999997654211                      


Q ss_pred             eeEEEEecCCCccceecccCCcceEEEEEeCCCCEEEe-ecCCCeEEEEECCCCeeeeeeecCCCC-----------eee
Q 042146           80 ATIRLWDVPTATSLKTLIGHTNYVFCINFNPQSNRIVS-DTFNETIRIWDIKTGKCLKVLPAHSDP-----------VTA  147 (262)
Q Consensus        80 ~~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~-~~~dg~i~vwd~~~~~~~~~~~~~~~~-----------v~~  147 (262)
                        ..+.      .+....+|...+.+++|+|||+++++ +..++.+.+||..++++...+..|...           ...
T Consensus        96 --~~~~------~i~~~~~~~~~~~s~~~spDG~~l~v~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  167 (426)
T d1hzua2          96 --TKVA------EIKIGIEARSVESSKFKGYEDRYTIAGAYWPPQFAIMDGETLEPKQIVSTRGMTVDTQTYHPEPRVAA  167 (426)
T ss_dssp             --EEEE------EEECCSEEEEEEECCSTTCTTTEEEEEEEESSEEEEEETTTCCEEEEEECCEECSSSCCEESCCCEEE
T ss_pred             --eEEE------EEeCCCCCcceEEeeeecCCCCEEEEeecCCCeEEEEcCCccceeEEeeccCCCccceeecCCCceeE
Confidence              0001      11222346666778888999998755 457899999999999887776554433           345


Q ss_pred             EEEccCCCEEEEEeC-CCeEEEEeCCC---------------------CCccEEEEEc-CCCeEEEEecCCCceeeEEec
Q 042146          148 IDFNRDGTMIVTSSY-DGLYRILDAST---------------------PNGKFILVGT-LDNTLRLWNYSTRKILKTYSG  204 (262)
Q Consensus       148 ~~~~~~~~~l~~~~~-dg~i~~~d~~~---------------------~~~~~l~~~~-~dg~i~i~d~~~~~~~~~~~~  204 (262)
                      +.+++++..++.... .+.+.+++...                     +++++++++. .+..+.+++..+++.+.....
T Consensus       168 i~~s~d~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~a~~~~~~~~~~~~~~~~~~~~~~~  247 (426)
T d1hzua2         168 IIASHEHPEFIVNVKETGKVLLVNYKDIDNLTVTSIGAAPFLADGGWDSSHRYFMTAANNSNKVAVIDSKDRRLSALVDV  247 (426)
T ss_dssp             EEECSSSSEEEEEETTTTEEEEEECSSSSSCEEEEEECCSSEEEEEECTTSCEEEEEETTCSEEEEEETTTTEEEEEEEC
T ss_pred             EEECCCCCEEEEecCCCCeEEEEEeccccceeeEEeccCCccEeeeECCCCcEEEeeeecccceeeeecccccEEEEecc
Confidence            556666665554443 34455554332                     6777766665 556789999999888776653


Q ss_pred             cCCceeE------------EEEEEecCCC--------------------eeEEccccceEEEEEcCCCCeEEE-------
Q 042146          205 YTNSKYC------------ISSTFSVTNG--------------------KYIVSHRDPVISVASHPAKNIIAS-------  245 (262)
Q Consensus       205 ~~~~~~~------------~~~~~~~~~~--------------------~~~~~~~~~v~~~~~~p~~~~l~~-------  245 (262)
                      .......            ........++                    ..+.+|...+..++|+|++++|++       
T Consensus       248 ~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~v~~~~~~~~~~~~~~~~~~~~l~g~~~~v~~v~~sPdg~~l~v~~~~~~s  327 (426)
T d1hzua2         248 GKTPHPGRGANFVHPKYGPVWSTSHLGDGSISLIGTDPKNHPQYAWKKVAELQGQGGGSLFIKTHPKSSHLYVDTTFNPD  327 (426)
T ss_dssp             SSCCCCSCCEEEEETTTEEEEEEECTTTCEEEEEECCTTTCTTTBTSEEEEEECSSSCCCCEECCTTCSEEEECCTTCSS
T ss_pred             CCcccccceeeeecCCCCceEEeccCCCceEEEeeccccccccccceEeEEEecCCCceeEEEcCCCCceEEEeecCCCC
Confidence            3211100            0000000111                    123457888999999999999995       


Q ss_pred             eeecCCCcEEEEeecc
Q 042146          246 GALDNDRTMKIWTQEK  261 (262)
Q Consensus       246 ~~~d~d~~i~iw~~~~  261 (262)
                      ++  .|++|+|||++.
T Consensus       328 ~~--~~~tv~vwd~~t  341 (426)
T d1hzua2         328 AR--ISQSVAVFDLKN  341 (426)
T ss_dssp             HH--HHTCEEEEETTC
T ss_pred             cc--cCCEEEEEECCC
Confidence            44  578999999753

>d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Pseudomonas putida [TaxId: 303]

Probab=99.87  E-value=5.9e-21  Score=146.84  Aligned_cols=110  Identities=11%  Similarity=0.063  Sum_probs=86.1

Q ss_pred             EEEccCCCeEEEecCCCeEEEeecCCCCCCCCCCCCCCccccCCccccccceeEEEEecCCCccceecc-cCCcceEEEE
Q 042146           29 VKFSHDGRLLTSSSAEKTLLTYSLSSISNFDSTPPSPLQKFTGHEQGISDLATIRLWDVPTATSLKTLI-GHTNYVFCIN  107 (262)
Q Consensus        29 ~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~i~v~d~~~~~~~~~~~-~~~~~v~~~~  107 (262)
                      ++|++++++|++++.+++|.+||+                                   .+++.+.+++ .+...+.+++
T Consensus         2 ~a~~~~~~~l~~~~~~~~v~v~D~-----------------------------------~t~~~~~t~~~~~~~~p~~l~   46 (346)
T d1jmxb_           2 PALKAGHEYMIVTNYPNNLHVVDV-----------------------------------ASDTVYKSCVMPDKFGPGTAM   46 (346)
T ss_dssp             CCCCTTCEEEEEEETTTEEEEEET-----------------------------------TTTEEEEEEECSSCCSSCEEE
T ss_pred             ccCCCCCcEEEEEcCCCEEEEEEC-----------------------------------CCCCEEEEEEcCCCCCcceEE
Confidence            478999999999999999887754                                   5666666654 3455678999


Q ss_pred             EeCCCCEE-EeecCCCeEEEEECCCCeeeeeeecCC------CCeeeEEEccCCCEEEEEe------------CCCeEEE
Q 042146          108 FNPQSNRI-VSDTFNETIRIWDIKTGKCLKVLPAHS------DPVTAIDFNRDGTMIVTSS------------YDGLYRI  168 (262)
Q Consensus       108 ~~~~~~~l-~~~~~dg~i~vwd~~~~~~~~~~~~~~------~~v~~~~~~~~~~~l~~~~------------~dg~i~~  168 (262)
                      |+|||+++ ++++.++.|.+||+.+++.+..+....      ..+..++|+|||+++++++            .++.+.+
T Consensus        47 ~spDG~~l~v~~~~~~~v~~~d~~t~~~~~~~~~~~~~~~~~~~~~~v~~s~DG~~l~v~~~~~~~~~~~~~~~~~~i~~  126 (346)
T d1jmxb_          47 MAPDNRTAYVLNNHYGDIYGIDLDTCKNTFHANLSSVPGEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVKPPRLEV  126 (346)
T ss_dssp             ECTTSSEEEEEETTTTEEEEEETTTTEEEEEEESCCSTTEEEECSSCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEE
T ss_pred             ECCCCCEEEEEECCCCcEEEEeCccCeeeeeecccccccccCCceEEEEEecCCCEEEEEecCCcceeeeeccCcceEEE
Confidence            99999987 566788999999999998887765432      2457899999999888775            3677888


Q ss_pred             EeCCC
Q 042146          169 LDAST  173 (262)
Q Consensus       169 ~d~~~  173 (262)
                      |+...
T Consensus       127 ~~~~~  131 (346)
T d1jmxb_         127 FSTAD  131 (346)
T ss_dssp             EEGGG
T ss_pred             Eeccc
Confidence            87654

>d1ri6a_ b.69.11.1 (A:) Putative isomerase YbhE {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Putative isomerase YbhE
family: Putative isomerase YbhE
domain: Putative isomerase YbhE
species: Escherichia coli [TaxId: 562]

Probab=99.83  E-value=7.5e-19  Score=134.41  Aligned_cols=224  Identities=11%  Similarity=0.198  Sum_probs=137.2

Q ss_pred             CCCceeeec--cc---ccceecccCcCceEEEEEccCCCeEEE-ecCCCeEEEeecCCCCCCCCCCCCCCccccCCcccc
Q 042146            3 SDRSLESFR--PY---TLTQTLNGHLRAVSYVKFSHDGRLLTS-SSAEKTLLTYSLSSISNFDSTPPSPLQKFTGHEQGI   76 (262)
Q Consensus         3 ~d~~i~~~~--~~---~~~~~~~~h~~~v~~~~~~~~~~~l~s-~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v   76 (262)
                      .|++|..|.  ..   +.++.+ .|.+.+..++|+|||++|++ +..|+.|++|++....                    
T Consensus        12 ~~~~I~v~~~~~~~~l~~~~~~-~~~~~v~~la~spDG~~L~v~~~~d~~i~~~~i~~~~--------------------   70 (333)
T d1ri6a_          12 ESQQIHVWNLNHEGALTLTQVV-DVPGQVQPMVVSPDKRYLYVGVRPEFRVLAYRIAPDD--------------------   70 (333)
T ss_dssp             GGTEEEEEEECTTSCEEEEEEE-ECSSCCCCEEECTTSSEEEEEETTTTEEEEEEECTTT--------------------
T ss_pred             CCCcEEEEEEcCCCCeEEEEEE-cCCCCEeEEEEeCCCCEEEEEECCCCeEEEEEEeCCC--------------------
Confidence            577888885  22   233333 58899999999999998855 4568999999764311                    


Q ss_pred             ccceeEEEEecCCCc-cceecccCCcceEEEEEeCCCCEEEeecC-CCeEEEEECCCCeeeee--eecCCCCeeeEEEcc
Q 042146           77 SDLATIRLWDVPTAT-SLKTLIGHTNYVFCINFNPQSNRIVSDTF-NETIRIWDIKTGKCLKV--LPAHSDPVTAIDFNR  152 (262)
Q Consensus        77 ~~~~~i~v~d~~~~~-~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-dg~i~vwd~~~~~~~~~--~~~~~~~v~~~~~~~  152 (262)
                                   .. .......+...+..++|+|+|++|++++. ++.|.+|+.........  ...+...+.++.++|
T Consensus        71 -------------~~~~~~~~~~~~~~p~~l~~spDg~~l~v~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~v~~s~  137 (333)
T d1ri6a_          71 -------------GALTFAAESALPGSLTHISTDHQGQFVFVGSYNAGNVSVTRLEDGLPVGVVDVVEGLDGCHSANISP  137 (333)
T ss_dssp             -------------CCEEEEEEEECSSCCSEEEECTTSSEEEEEETTTTEEEEEEEETTEEEEEEEEECCCTTBCCCEECT
T ss_pred             -------------CcEEEeeecccCCCceEEEEcCCCCEEeecccCCCceeeeccccccceecccccCCCccceEEEeee
Confidence                         11 11111223345667999999999888764 67899998876654333  345667789999999


Q ss_pred             CCCEEEEEe-CCCeEEEEeCCC--------------------------CCccEEEE-EcCCCeEEEEecCCCc----eee
Q 042146          153 DGTMIVTSS-YDGLYRILDAST--------------------------PNGKFILV-GTLDNTLRLWNYSTRK----ILK  200 (262)
Q Consensus       153 ~~~~l~~~~-~dg~i~~~d~~~--------------------------~~~~~l~~-~~~dg~i~i~d~~~~~----~~~  200 (262)
                      ++++++.++ .+..+.+|+...                          +++.+++. ....+...+++.....    ...
T Consensus       138 d~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~g~~p~~i~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~  217 (333)
T d1ri6a_         138 DNRTLWVPALKQDRICLFTVSDDGHLVAQDPAEVTTVEGAGPRHMVFHPNEQYAYCVNELNSSVDVWELKDPHGNIECVQ  217 (333)
T ss_dssp             TSSEEEEEEGGGTEEEEEEECTTSCEEEEEEEEEECSTTCCEEEEEECTTSSEEEEEETTTTEEEEEESSCTTSCCEEEE
T ss_pred             cceeeeccccccceeeEEEeccCCcceeeeceeeeeecCCCccEEEEeccceeEEeeccccCceEEEeecccccceeeee
Confidence            999887776 456788888655                          33444333 3344555666543221    111


Q ss_pred             EEec----cCCceeEEEEEEecCCCeeEEc--------------------------cccceEEEEEcCCCCeEEEeeecC
Q 042146          201 TYSG----YTNSKYCISSTFSVTNGKYIVS--------------------------HRDPVISVASHPAKNIIASGALDN  250 (262)
Q Consensus       201 ~~~~----~~~~~~~~~~~~~~~~~~~~~~--------------------------~~~~v~~~~~~p~~~~l~~~~~d~  250 (262)
                      .+..    ...........+.+....++..                          ....+..++|+|+|++|++++. .
T Consensus       218 ~~~~~~~~~~~~~~~~~~~~s~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~a~spDGk~l~va~~-~  296 (333)
T d1ri6a_         218 TLDMMPENFSDTRWAADIHITPDGRHLYACDRTASLITVFSVSEDGSVLSKEGFQPTETQPRGFNVDHSGKYLIAAGQ-K  296 (333)
T ss_dssp             EEECSCTTCCSCCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCCEEEEEEEECSSSCCCEEECTTSSEEEEECT-T
T ss_pred             eeeeeecCCCccccceeEEEecccCceeeecccCCeEEEEEEcCCCCEEEEEEEeCCCCCeeEEEEeCCCCEEEEEEC-C
Confidence            1111    1111112222222222221111                          2345678999999999887763 4


Q ss_pred             CCcEEEEeecc
Q 042146          251 DRTMKIWTQEK  261 (262)
Q Consensus       251 d~~i~iw~~~~  261 (262)
                      ++.|++|+++.
T Consensus       297 ~~~v~v~~id~  307 (333)
T d1ri6a_         297 SHHISVYEIVG  307 (333)
T ss_dssp             TCEEEEEEEET
T ss_pred             CCeEEEEEEEC
Confidence            68999998753

>d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.83  E-value=3.7e-19  Score=141.40  Aligned_cols=172  Identities=10%  Similarity=0.006  Sum_probs=128.1

Q ss_pred             ccCCCeEEEecCCCeEEEeecCCCCCCCCCCCCCCccccCCccccccceeEEEEecCCCccceecccCCcceEEEEEeCC
Q 042146           32 SHDGRLLTSSSAEKTLLTYSLSSISNFDSTPPSPLQKFTGHEQGISDLATIRLWDVPTATSLKTLIGHTNYVFCINFNPQ  111 (262)
Q Consensus        32 ~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~  111 (262)
                      +++.-++++.+.||+|.+|                                   |..+++.+..+..+ ..+..++|+||
T Consensus        29 ~~~~~~~v~~~d~g~v~v~-----------------------------------D~~t~~v~~~~~~g-~~~~~v~fSpD   72 (432)
T d1qksa2          29 DLENLFSVTLRDAGQIALI-----------------------------------DGSTYEIKTVLDTG-YAVHISRLSAS   72 (432)
T ss_dssp             CGGGEEEEEETTTTEEEEE-----------------------------------ETTTCCEEEEEECS-SCEEEEEECTT
T ss_pred             CCCcEEEEEEcCCCEEEEE-----------------------------------ECCCCcEEEEEeCC-CCeeEEEECCC
Confidence            3344456888889987777                                   55678888888766 46899999999


Q ss_pred             CCEEEeecCCCeEEEEECCCCee--eeee---ecCCCCeeeEEEccCCCEE-EEEeCCCeEEEEeCCC------------
Q 042146          112 SNRIVSDTFNETIRIWDIKTGKC--LKVL---PAHSDPVTAIDFNRDGTMI-VTSSYDGLYRILDAST------------  173 (262)
Q Consensus       112 ~~~l~~~~~dg~i~vwd~~~~~~--~~~~---~~~~~~v~~~~~~~~~~~l-~~~~~dg~i~~~d~~~------------  173 (262)
                      |+++++++.||.|++||+.+++.  +..+   ..|.+.+.+..|+|||++| ++++.++.+++||..+            
T Consensus        73 G~~l~~~s~dg~v~~~d~~t~~~~~~~~i~~~~~~~~~~~s~~~SpDG~~l~vs~~~~~~v~i~d~~t~~~~~~~~~~~~  152 (432)
T d1qksa2          73 GRYLFVIGRDGKVNMIDLWMKEPTTVAEIKIGSEARSIETSKMEGWEDKYAIAGAYWPPQYVIMDGETLEPKKIQSTRGM  152 (432)
T ss_dssp             SCEEEEEETTSEEEEEETTSSSCCEEEEEECCSEEEEEEECCSTTCTTTEEEEEEEETTEEEEEETTTCCEEEEEECCEE
T ss_pred             CCEEEEEcCCCCEEEEEeeCCCceEEEEEecCCCCCCeEEecccCCCCCEEEEEcCCCCeEEEEeCccccceeeeccCCc
Confidence            99999999999999999987753  3333   2455566777788999976 6788899999999876            


Q ss_pred             -------------------CCccE-EEEEcCCCeEEEEecCCCceeeEEeccCCceeEEEEEEecCCCeeEEccccceEE
Q 042146          174 -------------------PNGKF-ILVGTLDNTLRLWNYSTRKILKTYSGYTNSKYCISSTFSVTNGKYIVSHRDPVIS  233 (262)
Q Consensus       174 -------------------~~~~~-l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~  233 (262)
                                         +++.. +++...++.|.+||..+++......-.                     +...+..
T Consensus       153 ~~~~~~~~~~~~~~~v~~s~dg~~~~vs~~~~~~i~~~d~~~~~~~~~~~i~---------------------~g~~~~~  211 (432)
T d1qksa2         153 TYDEQEYHPEPRVAAILASHYRPEFIVNVKETGKILLVDYTDLNNLKTTEIS---------------------AERFLHD  211 (432)
T ss_dssp             CTTTCCEESCCCEEEEEECSSSSEEEEEETTTTEEEEEETTCSSEEEEEEEE---------------------CCSSEEE
T ss_pred             cccceeccCCCceeEEEECCCCCEEEEEEccCCeEEEEEccCCCcceEEEEc---------------------ccCcccc
Confidence                               33443 455666788888888876654432210                     5567889


Q ss_pred             EEEcCCCCeEEEeeecCCCcEEEEeecc
Q 042146          234 VASHPAKNIIASGALDNDRTMKIWTQEK  261 (262)
Q Consensus       234 ~~~~p~~~~l~~~~~d~d~~i~iw~~~~  261 (262)
                      ++|+|+++++++++. .++.+.+++...
T Consensus       212 ~~~spdg~~~~va~~-~~~~v~v~d~~~  238 (432)
T d1qksa2         212 GGLDGSHRYFITAAN-ARNKLVVIDTKE  238 (432)
T ss_dssp             EEECTTSCEEEEEEG-GGTEEEEEETTT
T ss_pred             ceECCCCCEEEEecc-ccceEEEeeccc
Confidence            999999999888874 366788887653

>d2madh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]

Probab=99.79  E-value=1e-16  Score=124.54  Aligned_cols=226  Identities=11%  Similarity=-0.002  Sum_probs=144.6

Q ss_pred             CCceeeec--ccccceecccCcCceEEEEEccCCCeEEEec----------CCCeEEEeecCCCCCCCCCCCCCCcc--c
Q 042146            4 DRSLESFR--PYTLTQTLNGHLRAVSYVKFSHDGRLLTSSS----------AEKTLLTYSLSSISNFDSTPPSPLQK--F   69 (262)
Q Consensus         4 d~~i~~~~--~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~----------~d~~i~iw~~~~~~~~~~~~~~~~~~--~   69 (262)
                      ++.++.++  ..+++.++..+..+  .++|+|||++|++++          .++.|.+||..+.+............  .
T Consensus        46 ~~~v~v~D~~tg~~~~~~~~~~~~--~~a~SpDG~~l~va~~~~~~~~~~~~~~~v~v~D~~t~~~~~~~~~~~~~~~~~  123 (373)
T d2madh_          46 IIQQWVLDAGSGSILGHVNGGFLP--NPVAAHSGSEFALASTSFSRIAKGKRTDYVEVFDPVTFLPIADIELPDAPRFDV  123 (373)
T ss_pred             CceEEEEECCCCCEEEEEeCCCCc--cEEEcCCCCEEEEEeecCCcccccccceEEEEEECCCCcEEEEEecCCcceeEe
Confidence            44566664  66777777776654  799999999998875          46789999988754322111111000  0


Q ss_pred             cCCcc--cccc------------ceeEEEEecCCCccceecccCCcceEEEEEeCCCCEE-EeecCCCeEEEEECCCCee
Q 042146           70 TGHEQ--GISD------------LATIRLWDVPTATSLKTLIGHTNYVFCINFNPQSNRI-VSDTFNETIRIWDIKTGKC  134 (262)
Q Consensus        70 ~~~~~--~v~~------------~~~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l-~~~~~dg~i~vwd~~~~~~  134 (262)
                      ..+..  .+..            ...+.+|+....+..    .+.....++.++|+++.+ ++.+.|+.+.+|+...++.
T Consensus       124 ~~~~~~~~~s~dg~~~~v~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~s~~g~~~~v~~~~dg~~~~~~~~~~~~  199 (373)
T d2madh_         124 GPYSWMNANTPNNADLLFFQFAAGPAVGLVVQGGSSDD----QLLSSPTCYHIHPGAPSTFYLLCAQGGLAKTDHAGGAA  199 (373)
T ss_pred             ccCCCcEEEEeCCCcEEEEEEcCCCceEEeeccCCeEE----EEeccceeEEEecCCCcEEEEEcCCCeEEEEEcCCcee
Confidence            00000  0000            113444444443332    233446788899988764 6888999999999988876


Q ss_pred             eeeeecCC------CCeeeEEEccCCCEEEEEeCCCeEEEEeCCC--------------------------------C--
Q 042146          135 LKVLPAHS------DPVTAIDFNRDGTMIVTSSYDGLYRILDAST--------------------------------P--  174 (262)
Q Consensus       135 ~~~~~~~~------~~v~~~~~~~~~~~l~~~~~dg~i~~~d~~~--------------------------------~--  174 (262)
                      ......+.      .....+.+++++ .++..+.++.+.+|+...                                +  
T Consensus       200 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~  278 (373)
T d2madh_         200 GAGLVGAMLTAAQNLLTQPAQANKSG-RIVWPVYSGKILQADISAAGATNKAPIDALSGGRKADTWRPGGWQQVAYLKSS  278 (373)
T ss_pred             eEEEeeeccccCccceeeeEEECCCc-eEEEecCCceEEEEEcCCCeEEEEEeeccccCcEEeeeeccCcceeeEEecCC
Confidence            65543221      122344455554 345556788888887664                                1  


Q ss_pred             --------CccEEEEEcCCCeEEEEecCCCceeeEEeccCCceeEEEEEEecCCCeeEEccccceEEEEEcCCCCe--EE
Q 042146          175 --------NGKFILVGTLDNTLRLWNYSTRKILKTYSGYTNSKYCISSTFSVTNGKYIVSHRDPVISVASHPAKNI--IA  244 (262)
Q Consensus       175 --------~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~--l~  244 (262)
                              .+..++....++.+.+||..+++.+..+.                       +...+..++|+|||+.  ++
T Consensus       279 ~~~~~~~~~~~~~~~~~~~~~v~~~d~~t~~~~~~~~-----------------------~~~~~~~~a~spDG~~~l~v  335 (373)
T d2madh_         279 DGIYLLTSEQSAWKLHAAAKEVTSVTGLVGQTSSQIS-----------------------LGHDVDAISVAQDGGPDLYA  335 (373)
T ss_pred             CeEEEecCCCceEEeecCCCeEEEEECCCCcEEEEec-----------------------CCCCeeEEEECCCCCEEEEE
Confidence                    22334455666788899998888888775                       6677899999999984  45


Q ss_pred             EeeecCCCcEEEEeecc
Q 042146          245 SGALDNDRTMKIWTQEK  261 (262)
Q Consensus       245 ~~~~d~d~~i~iw~~~~  261 (262)
                      +++  .|+.|++||+..
T Consensus       336 t~~--~d~~v~v~D~~t  350 (373)
T d2madh_         336 LSA--GTEVLHIYDAGA  350 (373)
T ss_pred             EeC--CCCeEEEEECCC
Confidence            677  799999999864

>d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=99.78  E-value=3.1e-17  Score=130.05  Aligned_cols=184  Identities=8%  Similarity=0.023  Sum_probs=127.6

Q ss_pred             EccC--CCeEEEecCCCeEEEeecCCCCCCCCCCCCCCccccCCccccccceeEEEEecCCCccceecccCCcceEEEEE
Q 042146           31 FSHD--GRLLTSSSAEKTLLTYSLSSISNFDSTPPSPLQKFTGHEQGISDLATIRLWDVPTATSLKTLIGHTNYVFCINF  108 (262)
Q Consensus        31 ~~~~--~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~i~v~d~~~~~~~~~~~~~~~~v~~~~~  108 (262)
                      ++.+  +.++++.+.||+|++|                                   |+.+++.+.++..|. .+..++|
T Consensus        26 ~~~d~~~~~~V~~~~dg~v~vw-----------------------------------D~~t~~~~~~l~~g~-~~~~vaf   69 (426)
T d1hzua2          26 NDLDLPNLFSVTLRDAGQIALV-----------------------------------DGDSKKIVKVIDTGY-AVHISRM   69 (426)
T ss_dssp             SCCCGGGEEEEEETTTTEEEEE-----------------------------------ETTTCSEEEEEECCS-SEEEEEE
T ss_pred             ccCCCCeEEEEEEcCCCEEEEE-----------------------------------ECCCCcEEEEEeCCC-CeeEEEE
Confidence            4444  3356788889988777                                   556778888887664 5899999


Q ss_pred             eCCCCEEEeecCCCeEEEEECCCCeeee--ee---ecCCCCeeeEEEccCCCEEEE-EeCCCeEEEEeCCC---------
Q 042146          109 NPQSNRIVSDTFNETIRIWDIKTGKCLK--VL---PAHSDPVTAIDFNRDGTMIVT-SSYDGLYRILDAST---------  173 (262)
Q Consensus       109 ~~~~~~l~~~~~dg~i~vwd~~~~~~~~--~~---~~~~~~v~~~~~~~~~~~l~~-~~~dg~i~~~d~~~---------  173 (262)
                      +|||+++++++.|+.|++||+.+++...  .+   ..|...+.+++|+|||+++++ +..++.+.+||...         
T Consensus        70 SPDGk~l~~~~~d~~v~vwd~~t~~~~~~~~i~~~~~~~~~~~s~~~spDG~~l~v~~~~~~~v~i~d~~~~~~~~~~~~  149 (426)
T d1hzua2          70 SASGRYLLVIGRDARIDMIDLWAKEPTKVAEIKIGIEARSVESSKFKGYEDRYTIAGAYWPPQFAIMDGETLEPKQIVST  149 (426)
T ss_dssp             CTTSCEEEEEETTSEEEEEETTSSSCEEEEEEECCSEEEEEEECCSTTCTTTEEEEEEEESSEEEEEETTTCCEEEEEEC
T ss_pred             CCCCCEEEEEeCCCCEEEEEccCCceeEEEEEeCCCCCcceEEeeeecCCCCEEEEeecCCCeEEEEcCCccceeEEeec
Confidence            9999999999999999999999886433  22   245556777888999998655 45899999999876         


Q ss_pred             -----------CCc-cEEEEEcCCCeEEEEecCCCceeeEEeccCCceeEEEEEEecCCCeeEEccccceEEEEEcCCCC
Q 042146          174 -----------PNG-KFILVGTLDNTLRLWNYSTRKILKTYSGYTNSKYCISSTFSVTNGKYIVSHRDPVISVASHPAKN  241 (262)
Q Consensus       174 -----------~~~-~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~  241 (262)
                                 +++ ...++++.|+...++.......+..+..........          ....+...+..++|+|+++
T Consensus       150 ~~~~~~~~~~~~~~~~~~i~~s~d~~~~~~~~~~~~~i~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~g~  219 (426)
T d1hzua2         150 RGMTVDTQTYHPEPRVAAIIASHEHPEFIVNVKETGKVLLVNYKDIDNLTV----------TSIGAAPFLADGGWDSSHR  219 (426)
T ss_dssp             CEECSSSCCEESCCCEEEEEECSSSSEEEEEETTTTEEEEEECSSSSSCEE----------EEEECCSSEEEEEECTTSC
T ss_pred             cCCCccceeecCCCceeEEEECCCCCEEEEecCCCCeEEEEEeccccceee----------EEeccCCccEeeeECCCCc
Confidence                       223 245566666666665554433333333222111111          1122777899999999999


Q ss_pred             eEEEeeecCCCcEEEEeecc
Q 042146          242 IIASGALDNDRTMKIWTQEK  261 (262)
Q Consensus       242 ~l~~~~~d~d~~i~iw~~~~  261 (262)
                      +++++.. .+..+.+++...
T Consensus       220 ~~~~a~~-~~~~~~~~~~~~  238 (426)
T d1hzua2         220 YFMTAAN-NSNKVAVIDSKD  238 (426)
T ss_dssp             EEEEEET-TCSEEEEEETTT
T ss_pred             EEEeeee-cccceeeeeccc
Confidence            9888874 366778887653

>d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.76  E-value=8.6e-17  Score=124.01  Aligned_cols=49  Identities=8%  Similarity=0.099  Sum_probs=34.5

Q ss_pred             CCceeeec--ccccceecccCcCceEEEEEccCCCeEEEec----------CCCeEEEeecCC
Q 042146            4 DRSLESFR--PYTLTQTLNGHLRAVSYVKFSHDGRLLTSSS----------AEKTLLTYSLSS   54 (262)
Q Consensus         4 d~~i~~~~--~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~----------~d~~i~iw~~~~   54 (262)
                      +.+++.|+  ..+++.++..+..+  .++|+|||++|++++          .|+.|++||..+
T Consensus        27 ~~~v~v~D~~tg~~~~~~~~g~~~--~~a~SpDg~~l~v~~~~~~~~~~g~~d~~v~v~D~~t   87 (355)
T d2bbkh_          27 VTQQFVIDGEAGRVIGMIDGGFLP--NPVVADDGSFIAHASTVFSRIARGERTDYVEVFDPVT   87 (355)
T ss_dssp             SEEEEEEETTTTEEEEEEEECSSC--EEEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTT
T ss_pred             cCeEEEEECCCCcEEEEEECCCCC--ceEEcCCCCEEEEEeCCCccccccCCCCEEEEEECCC
Confidence            45577765  56677777665544  699999999888654          367777776654

>d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: YVTN repeat
domain: Surface layer protein
species: Archaeon Methanosarcina mazei [TaxId: 2209]

Probab=99.74  E-value=2.9e-15  Score=112.47  Aligned_cols=171  Identities=18%  Similarity=0.246  Sum_probs=123.1

Q ss_pred             ecCCCccceecccCCcceEEEEEeCCCCEE-EeecCCCeEEEEECCCCeeeeeeecCCCCeeeEEEccCCCEEE-EEeCC
Q 042146           86 DVPTATSLKTLIGHTNYVFCINFNPQSNRI-VSDTFNETIRIWDIKTGKCLKVLPAHSDPVTAIDFNRDGTMIV-TSSYD  163 (262)
Q Consensus        86 d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l-~~~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~-~~~~d  163 (262)
                      |+.+++.+.++.. ...+..++|+|+|++| ++++.++.|++||+.+++.+..+..+. .+..++|++++..++ ++..+
T Consensus        18 D~~t~~~~~~i~~-g~~p~~va~spdG~~l~v~~~~~~~i~v~d~~t~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~   95 (301)
T d1l0qa2          18 DVTSNKVTATIPV-GSNPMGAVISPDGTKVYVANAHSNDVSIIDTATNNVIATVPAGS-SPQGVAVSPDGKQVYVTNMAS   95 (301)
T ss_dssp             ETTTTEEEEEEEC-SSSEEEEEECTTSSEEEEEEGGGTEEEEEETTTTEEEEEEECSS-SEEEEEECTTSSEEEEEETTT
T ss_pred             ECCCCeEEEEEEC-CCCceEEEEeCCCCEEEEEECCCCEEEEEECCCCceeeeeeccc-ccccccccccccccccccccc
Confidence            4455666666553 3457889999999987 567788999999999999999887665 468999999998655 45577


Q ss_pred             CeEEEEeCCC-------------------CCccEE-EEEcCCCeEEEEecCCCceeeEEeccCCceeEEEEEEecCCCee
Q 042146          164 GLYRILDAST-------------------PNGKFI-LVGTLDNTLRLWNYSTRKILKTYSGYTNSKYCISSTFSVTNGKY  223 (262)
Q Consensus       164 g~i~~~d~~~-------------------~~~~~l-~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  223 (262)
                      +.+.+|+...                   +++..+ +++..++.+.+|+..+++.+..+..+... .  ...+.+....+
T Consensus        96 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~--~~~~~~~~~~~  172 (301)
T d1l0qa2          96 STLSVIDTTSNTVAGTVKTGKSPLGLALSPDGKKLYVTNNGDKTVSVINTVTKAVINTVSVGRSP-K--GIAVTPDGTKV  172 (301)
T ss_dssp             TEEEEEETTTTEEEEEEECSSSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEECCSSE-E--EEEECTTSSEE
T ss_pred             ceeeecccccceeeeeccccccceEEEeecCCCeeeeeeccccceeeeeccccceeeecccCCCc-e--EEEeeccccce
Confidence            8899999876                   677765 45667889999999999888877654332 1  22233333332


Q ss_pred             EEc----------------------cccceEEEEEcCCCCeEEEeeec-CCCcEEEEeecc
Q 042146          224 IVS----------------------HRDPVISVASHPAKNIIASGALD-NDRTMKIWTQEK  261 (262)
Q Consensus       224 ~~~----------------------~~~~v~~~~~~p~~~~l~~~~~d-~d~~i~iw~~~~  261 (262)
                      +..                      ....+..++|++++..++.++.+ .++.|++||+.+
T Consensus       173 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~v~~~~~~~~~v~v~D~~t  233 (301)
T d1l0qa2         173 YVANFDSMSISVIDTVTNSVIDTVKVEAAPSGIAVNPEGTKAYVTNVDKYFNTVSMIDTGT  233 (301)
T ss_dssp             EEEETTTTEEEEEETTTTEEEEEEECSSEEEEEEECTTSSEEEEEEECSSCCEEEEEETTT
T ss_pred             eeecccccccccccccceeeeecccccCCcceeeccccccccccccccceeeeeeeeecCC
Confidence            222                      34557789999999988766422 357899999864

>d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.68  E-value=4.3e-16  Score=118.83  Aligned_cols=153  Identities=10%  Similarity=0.077  Sum_probs=118.3

Q ss_pred             CeEEEecCCCeEEEeecCCCCCCCCCCCCCCccccCCccccccceeEEEEecCCCccceeccc--CCcceEEEEEeCCCC
Q 042146           36 RLLTSSSAEKTLLTYSLSSISNFDSTPPSPLQKFTGHEQGISDLATIRLWDVPTATSLKTLIG--HTNYVFCINFNPQSN  113 (262)
Q Consensus        36 ~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~i~v~d~~~~~~~~~~~~--~~~~v~~~~~~~~~~  113 (262)
                      +||++++.|++|++||+                                   .+++.+..+..  +...+.+++|+|||+
T Consensus         2 ~~~vt~~~d~~v~v~D~-----------------------------------~s~~~~~~i~~~~~~~~~~~i~~spDg~   46 (337)
T d1pbyb_           2 DYILAPARPDKLVVIDT-----------------------------------EKMAVDKVITIADAGPTPMVPMVAPGGR   46 (337)
T ss_dssp             EEEEEEETTTEEEEEET-----------------------------------TTTEEEEEEECTTCTTCCCCEEECTTSS
T ss_pred             eEEEEEcCCCEEEEEEC-----------------------------------CCCeEEEEEECCCCCCCccEEEECCCCC
Confidence            58999999999888855                                   45555555543  345577899999999


Q ss_pred             EE-EeecCCCeEEEEECCCCeeeeeeecCCC-----CeeeEEEccCCCEEEEEeCCCeEEEEeCCCCCccEEEEEcCCCe
Q 042146          114 RI-VSDTFNETIRIWDIKTGKCLKVLPAHSD-----PVTAIDFNRDGTMIVTSSYDGLYRILDASTPNGKFILVGTLDNT  187 (262)
Q Consensus       114 ~l-~~~~~dg~i~vwd~~~~~~~~~~~~~~~-----~v~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~l~~~~~dg~  187 (262)
                      ++ ++++.++.|.+||+.+++.+..+..+..     .+..++|+|+++.++++..+.....|.          ....+..
T Consensus        47 ~l~v~~~~~~~v~v~D~~t~~~~~~~~~~~~~~~~~~~~~v~~s~dg~~l~~~~~~~~~~~~~----------~~~~~~~  116 (337)
T d1pbyb_          47 IAYATVNKSESLVKIDLVTGETLGRIDLSTPEERVKSLFGAALSPDGKTLAIYESPVRLELTH----------FEVQPTR  116 (337)
T ss_dssp             EEEEEETTTTEEEEEETTTCCEEEEEECCBTTEEEECTTCEEECTTSSEEEEEEEEEEECSSC----------EEECCCE
T ss_pred             EEEEEECCCCeEEEEECCCCcEEEEEecCCCcccccceeeEEEcCCCcEEEEeecCCcceeee----------ccccccc
Confidence            87 5677899999999999999888765532     456899999999999888765543332          3345788


Q ss_pred             EEEEecCCCceeeEEeccCCceeEEEEEEecCCCeeEEccccceEEEEEcCCCCeEEEeeecCCCcEEEEeec
Q 042146          188 LRLWNYSTRKILKTYSGYTNSKYCISSTFSVTNGKYIVSHRDPVISVASHPAKNIIASGALDNDRTMKIWTQE  260 (262)
Q Consensus       188 i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~d~d~~i~iw~~~  260 (262)
                      +.+||..+++....+.                       +...+..++|+|+++++++++  .  .+.+|+..
T Consensus       117 ~~~~d~~~~~~~~~~~-----------------------~~~~~~~~~~s~dg~~l~~~~--~--~~~~~d~~  162 (337)
T d1pbyb_         117 VALYDAETLSRRKAFE-----------------------APRQITMLAWARDGSKLYGLG--R--DLHVMDPE  162 (337)
T ss_dssp             EEEEETTTTEEEEEEE-----------------------CCSSCCCEEECTTSSCEEEES--S--SEEEEETT
T ss_pred             eeeccccCCeEEEecc-----------------------ccCCceEEEEcCCCCEEEEEc--C--Ccceeeee
Confidence            9999999999888877                       445677899999999999987  4  36678764

>d1mdah_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.65  E-value=4.4e-15  Score=115.20  Aligned_cols=100  Identities=10%  Similarity=-0.096  Sum_probs=66.9

Q ss_pred             ceeeec--ccccceecccCcCceEEEEEccCCCeEEEec----------CCCeEEEeecCCCCCCCCCCCCCCccccCCc
Q 042146            6 SLESFR--PYTLTQTLNGHLRAVSYVKFSHDGRLLTSSS----------AEKTLLTYSLSSISNFDSTPPSPLQKFTGHE   73 (262)
Q Consensus         6 ~i~~~~--~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~----------~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~   73 (262)
                      .++.++  ..+++.++..+..+  .++|+|||+.|++++          .|++|.+|                       
T Consensus        47 ~~~~~d~~~~~~~~~~~~~~~~--~~a~spDg~~i~~~~~~~~~~~~g~~d~~v~v~-----------------------  101 (368)
T d1mdah_          47 ENWVSCAGCGVTLGHSLGAFLS--LAVAGHSGSDFALASTSFARSAKGKRTDYVEVF-----------------------  101 (368)
T ss_dssp             EEEEEETTTTEEEEEEEECTTC--EEEECTTSSCEEEEEEEETTTTSSSEEEEEEEE-----------------------
T ss_pred             eEEEEeCCCCcEEEEEeCCCCC--cceECCCCCEEEEEcccCccccccccCCeEEEE-----------------------
Confidence            355554  45567777766655  589999999988764          24455555                       


Q ss_pred             cccccceeEEEEecCCCccceecccCC-------cceEEEEEeCCCCEEEeec-CCCeEEEEECCCCeeeeeeecCC
Q 042146           74 QGISDLATIRLWDVPTATSLKTLIGHT-------NYVFCINFNPQSNRIVSDT-FNETIRIWDIKTGKCLKVLPAHS  142 (262)
Q Consensus        74 ~~v~~~~~i~v~d~~~~~~~~~~~~~~-------~~v~~~~~~~~~~~l~~~~-~dg~i~vwd~~~~~~~~~~~~~~  142 (262)
                                  |..+++.+..+..+.       .....++|+|||++++++. .++.+.+||+.+++.+..+..+.
T Consensus       102 ------------D~~t~~~~~~i~~p~~~~~~~g~~p~~~a~SpDGk~l~va~~~~~~v~~~d~~~~~~~~~~~~~~  166 (368)
T d1mdah_         102 ------------DPVTFLPIADIELPDAPRFSVGPRVHIIGNCASSACLLFFLFGSSAAAGLSVPGASDDQLTKSAS  166 (368)
T ss_dssp             ------------CTTTCCEEEEEEETTSCSCCBSCCTTSEEECTTSSCEEEEECSSSCEEEEEETTTEEEEEEECSS
T ss_pred             ------------ECCCCcEeeeecCCccceecccCCccceEECCCCCEEEEEeCCCCeEEEEECCCCcEeEEeeccC
Confidence                        444555444332211       1223589999999988765 57899999999998887775543

>d1ri6a_ b.69.11.1 (A:) Putative isomerase YbhE {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Putative isomerase YbhE
family: Putative isomerase YbhE
domain: Putative isomerase YbhE
species: Escherichia coli [TaxId: 562]

Probab=99.64  E-value=1e-13  Score=105.33  Aligned_cols=163  Identities=10%  Similarity=0.104  Sum_probs=104.4

Q ss_pred             cCCcceEEEEEeCCCCEEEe-ecCCCeEEEEECCCCeeeeee---ecCCCCeeeEEEccCCCEEEEEeC-CCeEEEEeCC
Q 042146           98 GHTNYVFCINFNPQSNRIVS-DTFNETIRIWDIKTGKCLKVL---PAHSDPVTAIDFNRDGTMIVTSSY-DGLYRILDAS  172 (262)
Q Consensus        98 ~~~~~v~~~~~~~~~~~l~~-~~~dg~i~vwd~~~~~~~~~~---~~~~~~v~~~~~~~~~~~l~~~~~-dg~i~~~d~~  172 (262)
                      .|...+..|+|+|||++|++ +..|+.|.+|++........+   ..+...+..++|+|+|++|++++. ++.+.+|+..
T Consensus        34 ~~~~~v~~la~spDG~~L~v~~~~d~~i~~~~i~~~~~~~~~~~~~~~~~~p~~l~~spDg~~l~v~~~~~~~v~~~~~~  113 (333)
T d1ri6a_          34 DVPGQVQPMVVSPDKRYLYVGVRPEFRVLAYRIAPDDGALTFAAESALPGSLTHISTDHQGQFVFVGSYNAGNVSVTRLE  113 (333)
T ss_dssp             ECSSCCCCEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEECSSCCSEEEECTTSSEEEEEETTTTEEEEEEEE
T ss_pred             cCCCCEeEEEEeCCCCEEEEEECCCCeEEEEEEeCCCCcEEEeeecccCCCceEEEEcCCCCEEeecccCCCceeeeccc
Confidence            46788999999999999855 556899999998765332222   224455788999999999988875 6788888755


Q ss_pred             C----------------------CCccEEEEEc-CCCeEEEEecCCCceeeEEe----ccCCceeEEEEEEecCCCeeEE
Q 042146          173 T----------------------PNGKFILVGT-LDNTLRLWNYSTRKILKTYS----GYTNSKYCISSTFSVTNGKYIV  225 (262)
Q Consensus       173 ~----------------------~~~~~l~~~~-~dg~i~i~d~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~  225 (262)
                      .                      ++++++++++ .+..|.+|+...........    ............+.........
T Consensus       114 ~~~~~~~~~~~~~~~~~~~v~~s~d~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~g~~p~~i~~~~~~~~~~~  193 (333)
T d1ri6a_         114 DGLPVGVVDVVEGLDGCHSANISPDNRTLWVPALKQDRICLFTVSDDGHLVAQDPAEVTTVEGAGPRHMVFHPNEQYAYC  193 (333)
T ss_dssp             TTEEEEEEEEECCCTTBCCCEECTTSSEEEEEEGGGTEEEEEEECTTSCEEEEEEEEEECSTTCCEEEEEECTTSSEEEE
T ss_pred             cccceecccccCCCccceEEEeeecceeeeccccccceeeEEEeccCCcceeeeceeeeeecCCCccEEEEeccceeEEe
Confidence            4                      6777777665 45679999877643222111    0001111111222222222111


Q ss_pred             c---------------------------------cccceEEEEEcCCCCeEEEeeecCCCcEEEEeecc
Q 042146          226 S---------------------------------HRDPVISVASHPAKNIIASGALDNDRTMKIWTQEK  261 (262)
Q Consensus       226 ~---------------------------------~~~~v~~~~~~p~~~~l~~~~~d~d~~i~iw~~~~  261 (262)
                      .                                 .......++++|++++++.... .++.+.+|++..
T Consensus       194 ~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~~~~~~~-~~~~~~~~~~~~  261 (333)
T d1ri6a_         194 VNELNSSVDVWELKDPHGNIECVQTLDMMPENFSDTRWAADIHITPDGRHLYACDR-TASLITVFSVSE  261 (333)
T ss_dssp             EETTTTEEEEEESSCTTSCCEEEEEEECSCTTCCSCCCEEEEEECTTSSEEEEEET-TTTEEEEEEECT
T ss_pred             eccccCceEEEeecccccceeeeeeeeeeecCCCccccceeEEEecccCceeeecc-cCCeEEEEEEcC
Confidence            1                                 2234667889999997776653 578899998753

>d2madh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]

Probab=99.61  E-value=3.5e-13  Score=104.23  Aligned_cols=149  Identities=7%  Similarity=-0.070  Sum_probs=109.3

Q ss_pred             cccCcCceEEEEEccCCCeEEEecC---CCeEEEeecCCCCCCCCCCCCCCccccCCccccccceeEEEEecCCCcccee
Q 042146           19 LNGHLRAVSYVKFSHDGRLLTSSSA---EKTLLTYSLSSISNFDSTPPSPLQKFTGHEQGISDLATIRLWDVPTATSLKT   95 (262)
Q Consensus        19 ~~~h~~~v~~~~~~~~~~~l~s~~~---d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~i~v~d~~~~~~~~~   95 (262)
                      ...+.+++.+++++||++.++....   ++...                                 |.+||..+++.+.+
T Consensus        16 ~~~~~~p~~~~a~spdg~~~~~~~~~~~~~~~~---------------------------------v~v~D~~tg~~~~~   62 (373)
T d2madh_          16 AGAADGPTNDEAPGADGRRSYINLPAHHSAIIQ---------------------------------QWVLDAGSGSILGH   62 (373)
T ss_pred             cccCCCCccccccCCCCCEEEEEcccccCCCce---------------------------------EEEEECCCCCEEEE
Confidence            3468899999999999998876532   22222                                 44667788888887


Q ss_pred             cccCCcceEEEEEeCCCCEEEeec----------CCCeEEEEECCCCeeeeeeecCCCCe-------eeEEEccCCCEEE
Q 042146           96 LIGHTNYVFCINFNPQSNRIVSDT----------FNETIRIWDIKTGKCLKVLPAHSDPV-------TAIDFNRDGTMIV  158 (262)
Q Consensus        96 ~~~~~~~v~~~~~~~~~~~l~~~~----------~dg~i~vwd~~~~~~~~~~~~~~~~v-------~~~~~~~~~~~l~  158 (262)
                      +..+..+  .++|+|||+++++++          .++.|.+||+.+++.+..+..+....       ..+.|+++++.++
T Consensus        63 ~~~~~~~--~~a~SpDG~~l~va~~~~~~~~~~~~~~~v~v~D~~t~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~  140 (373)
T d2madh_          63 VNGGFLP--NPVAAHSGSEFALASTSFSRIAKGKRTDYVEVFDPVTFLPIADIELPDAPRFDVGPYSWMNANTPNNADLL  140 (373)
T ss_pred             EeCCCCc--cEEEcCCCCEEEEEeecCCcccccccceEEEEEECCCCcEEEEEecCCcceeEeccCCCcEEEEeCCCcEE
Confidence            7655443  689999999998864          46789999999999888876655433       4578888888765


Q ss_pred             EEe--CCCeEEEEeCCC----------------CCcc-EEEEEcCCCeEEEEecCCCceeeEE
Q 042146          159 TSS--YDGLYRILDAST----------------PNGK-FILVGTLDNTLRLWNYSTRKILKTY  202 (262)
Q Consensus       159 ~~~--~dg~i~~~d~~~----------------~~~~-~l~~~~~dg~i~i~d~~~~~~~~~~  202 (262)
                      ...  .++.+.+|+...                ++++ .+++.+.|+.+.+|+...++.....
T Consensus       141 v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~~v~~~~dg~~~~~~~~~~~~~~~~  203 (373)
T d2madh_         141 FFQFAAGPAVGLVVQGGSSDDQLLSSPTCYHIHPGAPSTFYLLCAQGGLAKTDHAGGAAGAGL  203 (373)
T ss_pred             EEEEcCCCceEEeeccCCeEEEEeccceeEEEecCCCcEEEEEcCCCeEEEEEcCCceeeEEE
Confidence            554  456788888654                4554 4567888999999998877665543

>d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Pseudomonas putida [TaxId: 303]

Probab=99.61  E-value=4.2e-14  Score=107.93  Aligned_cols=204  Identities=11%  Similarity=0.027  Sum_probs=123.2

Q ss_pred             CCCCceeeec--ccccceecc-cCcCceEEEEEccCCCeE-EEecCCCeEEEeecCCCCCCCCCCCC---------C-Cc
Q 042146            2 SSDRSLESFR--PYTLTQTLN-GHLRAVSYVKFSHDGRLL-TSSSAEKTLLTYSLSSISNFDSTPPS---------P-LQ   67 (262)
Q Consensus         2 s~d~~i~~~~--~~~~~~~~~-~h~~~v~~~~~~~~~~~l-~s~~~d~~i~iw~~~~~~~~~~~~~~---------~-~~   67 (262)
                      ++|++|..|+  +.+++++++ .|...+.+++|+|||+++ ++++.++.|.+||+.+.+........         + ..
T Consensus        15 ~~~~~v~v~D~~t~~~~~t~~~~~~~~p~~l~~spDG~~l~v~~~~~~~v~~~d~~t~~~~~~~~~~~~~~~~~~~~~~v   94 (346)
T d1jmxb_          15 NYPNNLHVVDVASDTVYKSCVMPDKFGPGTAMMAPDNRTAYVLNNHYGDIYGIDLDTCKNTFHANLSSVPGEVGRSMYSF   94 (346)
T ss_dssp             ETTTEEEEEETTTTEEEEEEECSSCCSSCEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEESCCSTTEEEECSSCE
T ss_pred             cCCCEEEEEECCCCCEEEEEEcCCCCCcceEEECCCCCEEEEEECCCCcEEEEeCccCeeeeeecccccccccCCceEEE
Confidence            3577877775  567777776 456678899999999986 56678999999999875322111000         0 00


Q ss_pred             cccCCcccc---------------ccceeEEEEecCCCccceecccC--CcceEEEEEeCCCCEEEeec-----------
Q 042146           68 KFTGHEQGI---------------SDLATIRLWDVPTATSLKTLIGH--TNYVFCINFNPQSNRIVSDT-----------  119 (262)
Q Consensus        68 ~~~~~~~~v---------------~~~~~i~v~d~~~~~~~~~~~~~--~~~v~~~~~~~~~~~l~~~~-----------  119 (262)
                      .+......+               .....+.+|+..+++....+..+  ...+..+.+.+++.+++++.           
T Consensus        95 ~~s~DG~~l~v~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  174 (346)
T d1jmxb_          95 AISPDGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEAKPVRTFPMPRQVYLMRAADDGSLYVAGPDIYKMDVKTGK  174 (346)
T ss_dssp             EECTTSSEEEEEEEEEEECSSCEEECCCEEEEEEGGGGGGBCCSEEEECCSSCCCEEECTTSCEEEESSSEEEECTTTCC
T ss_pred             EEecCCCEEEEEecCCcceeeeeccCcceEEEEecccceeeeEEEeeeccCceEEEEecCCCEEEEeCCcceEEEccCCC
Confidence            011111101               01126778887776554433221  12233344444444333321           


Q ss_pred             -----------------------------------------------------CCCeEEEEECCCCeeee-eeecCCCCe
Q 042146          120 -----------------------------------------------------FNETIRIWDIKTGKCLK-VLPAHSDPV  145 (262)
Q Consensus       120 -----------------------------------------------------~dg~i~vwd~~~~~~~~-~~~~~~~~v  145 (262)
                                                                           .++.+.+||+.++.... ....+...+
T Consensus       175 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  254 (346)
T d1jmxb_         175 YTVALPLRNWNRKGYSAPDVLYFWPHQSPRHEFSMLYTIARFKDDKQDPATADLLYGYLSVDLKTGKTHTQEFADLTELY  254 (346)
T ss_dssp             EEEEECSTTCCCTTBCCCBCCCCCCCCCTTCEEEEEEEEEEC-------CCCEEEEEEEEEETTTCCEEEEEEEECSSCE
T ss_pred             EEEEEecCCCccceEEeccccEEEEEecCCCceEeeeeeeeeccCceeEeeccCCceEEEEECCCCceEEEEeeccccee
Confidence                                                                 11123333333332221 123355566


Q ss_pred             eeEEEccCCCEEEEEeCCCeEEEEeCCC-------------------CCccEEEEEcCCCeEEEEecCCCceeeEEeccC
Q 042146          146 TAIDFNRDGTMIVTSSYDGLYRILDAST-------------------PNGKFILVGTLDNTLRLWNYSTRKILKTYSGYT  206 (262)
Q Consensus       146 ~~~~~~~~~~~l~~~~~dg~i~~~d~~~-------------------~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~  206 (262)
                      ..+.+++++..++... ++.+.+||..+                   +++++|++++.|+.|++||.++++.+.+++.+.
T Consensus       255 ~~~~~~~~~~~~~~~~-~~~v~v~d~~~~~~~~~~~~~~~~~~va~s~DG~~l~v~~~d~~v~v~D~~t~~~i~~i~~p~  333 (346)
T d1jmxb_         255 FTGLRSPKDPNQIYGV-LNRLAKYDLKQRKLIKAANLDHTYYCVAFDKKGDKLYLGGTFNDLAVFNPDTLEKVKNIKLPG  333 (346)
T ss_dssp             EEEEECSSCTTEEEEE-ESEEEEEETTTTEEEEEEECSSCCCEEEECSSSSCEEEESBSSEEEEEETTTTEEEEEEECSS
T ss_pred             EEEEEeCCCCEEEEec-CCeEEEEECCCCcEEEEEcCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECccCCEEEEEECCC
Confidence            7778888777766655 46799999866                   899999999999999999999999999988543

>d2bgra1 b.70.3.1 (A:39-508) Dipeptidyl peptidase IV/CD26, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: DPP6 N-terminal domain-like
family: DPP6 N-terminal domain-like
domain: Dipeptidyl peptidase IV/CD26, N-terminal domain
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=99.58  E-value=7.2e-14  Score=111.76  Aligned_cols=133  Identities=13%  Similarity=0.159  Sum_probs=95.4

Q ss_pred             CCCceeeecc--cccc-----eecccCcCceEEEEEccCCCeEEEecCCCeEEEeecCCCCCCCCCCCCCCccccCCccc
Q 042146            3 SDRSLESFRP--YTLT-----QTLNGHLRAVSYVKFSHDGRLLTSSSAEKTLLTYSLSSISNFDSTPPSPLQKFTGHEQG   75 (262)
Q Consensus         3 ~d~~i~~~~~--~~~~-----~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~   75 (262)
                      .|+.+..+..  .+..     .++..|...|.+..|||||++|+.++.  ..++|...                      
T Consensus        34 ~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~i~~~~~SpDg~~i~~~~~--~~~~~r~s----------------------   89 (470)
T d2bgra1          34 QENNILVFNAEYGNSSVFLENSTFDEFGHSINDYSISPDGQFILLEYN--YVKQWRHS----------------------   89 (470)
T ss_dssp             SSSCEEEEETTTCCEEEEECTTTTTTSSSCCCEEEECTTSSEEEEEEE--EEECSSSC----------------------
T ss_pred             cCCcEEEEECCCCCEEEEEchhhhhhccCccceeEECCCCCEEEEEEC--Ccceeeec----------------------
Confidence            3566666652  2222     255667788999999999999998874  34555221                      


Q ss_pred             cccceeEEEEecCCCccceecccCCcceEEEEEeCCCCEEEeecCCCeEEEEECCCCeeeeeeec---------------
Q 042146           76 ISDLATIRLWDVPTATSLKTLIGHTNYVFCINFNPQSNRIVSDTFNETIRIWDIKTGKCLKVLPA---------------  140 (262)
Q Consensus        76 v~~~~~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~---------------  140 (262)
                        ..+.+.+||+.+++ +..+..+...+....|+|||+.+|... ++.+++|+..+++.......               
T Consensus        90 --~~~~~~l~d~~~~~-~~~l~~~~~~~~~~~~SPDG~~ia~~~-~~~l~~~~~~~g~~~~~t~~~~~~~~~~g~~d~~~  165 (470)
T d2bgra1          90 --YTASYDIYDLNKRQ-LITEERIPNNTQWVTWSPVGHKLAYVW-NNDIYVKIEPNLPSYRITWTGKEDIIYNGITDWVY  165 (470)
T ss_dssp             --EEEEEEEEETTTTE-ECCSSCCCTTEEEEEECSSTTCEEEEE-TTEEEEESSTTSCCEECCSCCBTTTEEESBCCHHH
T ss_pred             --cCceEEEEECCCCc-ccccccCCccccccccccCcceeeEee-cccceEEECCCCceeeeeeccCCCcccccccceee
Confidence              12257888998776 456777888999999999999999865 67899999988865543321               


Q ss_pred             ---CCCCeeeEEEccCCCEEEEEeCC
Q 042146          141 ---HSDPVTAIDFNRDGTMIVTSSYD  163 (262)
Q Consensus       141 ---~~~~v~~~~~~~~~~~l~~~~~d  163 (262)
                         ..+....+.|||||+.|+....|
T Consensus       166 ~~~~~~~~~~~~wSPDGk~ia~~~~d  191 (470)
T d2bgra1         166 EEEVFSAYSALWWSPNGTFLAYAQFN  191 (470)
T ss_dssp             HHHTSSSSBCEEECTTSSEEEEEEEE
T ss_pred             eeeecCCccccEECCCCCccceeEec
Confidence               12334668899999999988654

>d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.47  E-value=1.7e-12  Score=99.43  Aligned_cols=160  Identities=8%  Similarity=-0.045  Sum_probs=104.7

Q ss_pred             EEEEecCCCccceecccCCcceEEEEEeCCCCEEEeec----------CCCeEEEEECCCCeeeeeeecCCC-------C
Q 042146           82 IRLWDVPTATSLKTLIGHTNYVFCINFNPQSNRIVSDT----------FNETIRIWDIKTGKCLKVLPAHSD-------P  144 (262)
Q Consensus        82 i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~----------~dg~i~vwd~~~~~~~~~~~~~~~-------~  144 (262)
                      |.+||..+++.+.++..+..+  .++|+|||++|++.+          .++.|.+||+.+++.+..+..+..       .
T Consensus        30 v~v~D~~tg~~~~~~~~g~~~--~~a~SpDg~~l~v~~~~~~~~~~g~~d~~v~v~D~~t~~~~~~~~~~~~~~~~~~~~  107 (355)
T d2bbkh_          30 QFVIDGEAGRVIGMIDGGFLP--NPVVADDGSFIAHASTVFSRIARGERTDYVEVFDPVTLLPTADIELPDAPRFLVGTY  107 (355)
T ss_dssp             EEEEETTTTEEEEEEEECSSC--EEEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTCCEEEEEEETTCCCCCBSCC
T ss_pred             EEEEECCCCcEEEEEECCCCC--ceEEcCCCCEEEEEeCCCccccccCCCCEEEEEECCCCCEEEEEecCCcceeecCCC
Confidence            556677788877777655444  699999999887643          478999999999998877654332       3


Q ss_pred             eeeEEEccCCCEEEEEe--CCCeEEEEeCCC---------C--------CccEEEEEcCCCeEEEEecCCCceeeEEecc
Q 042146          145 VTAIDFNRDGTMIVTSS--YDGLYRILDAST---------P--------NGKFILVGTLDNTLRLWNYSTRKILKTYSGY  205 (262)
Q Consensus       145 v~~~~~~~~~~~l~~~~--~dg~i~~~d~~~---------~--------~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~  205 (262)
                      ...++|+|+++.++.+.  .+..+.+|+...         +        .....++.+.||...++.......+..+...
T Consensus       108 ~~~~~~s~dg~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~~~~v~~~~~~~~~~~~~~  187 (355)
T d2bbkh_         108 PWMTSLTPDGKTLLFYQFSPAPAVGVVDLEGKAFKRMLDVPDCYHIFPTAPDTFFMHCRDGSLAKVAFGTEGTPEITHTE  187 (355)
T ss_dssp             GGGEEECTTSSEEEEEECSSSCEEEEEETTTTEEEEEEECCSEEEEEEEETTEEEEEETTSCEEEEECCSSSCCEEEECC
T ss_pred             CceEEEecCCCeeEEecCCCCceeeeeecCCCcEeeEEecCCcceEeecCCcceEEEcCCCCEEEEEecCCCeEEEEecc
Confidence            46789999999887765  456788888766         1        1122334445555555444433322222211


Q ss_pred             CCceeEEEEEEecCCCeeEEccccceEEEEEcCCCCeEEEeeecCCCcEEEEeecc
Q 042146          206 TNSKYCISSTFSVTNGKYIVSHRDPVISVASHPAKNIIASGALDNDRTMKIWTQEK  261 (262)
Q Consensus       206 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~d~d~~i~iw~~~~  261 (262)
                      ...                ..+...+....+.+++..++.++  .++.+++|++..
T Consensus       188 ~~~----------------~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~v~~~~~  225 (355)
T d2bbkh_         188 VFH----------------PEDEFLINHPAYSQKAGRLVWPT--YTGKIHQIDLSS  225 (355)
T ss_dssp             CCS----------------CTTSCBCSCCEEETTTTEEEEEB--TTSEEEEEECTT
T ss_pred             ccc----------------ceecceeeeccccCCCCeEEEec--CCCeEEEEecCC
Confidence            100                01344455667888888888888  889999998754

>d2bgra1 b.70.3.1 (A:39-508) Dipeptidyl peptidase IV/CD26, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: DPP6 N-terminal domain-like
family: DPP6 N-terminal domain-like
domain: Dipeptidyl peptidase IV/CD26, N-terminal domain
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=99.34  E-value=1.1e-11  Score=98.99  Aligned_cols=171  Identities=9%  Similarity=0.046  Sum_probs=104.9

Q ss_pred             EEEEccCCCeEEEecCCCeEEEeecCCCCCCCCCCCCCCccccCCccccccceeEEEEecCCCccceecccCCcceEEEE
Q 042146           28 YVKFSHDGRLLTSSSAEKTLLTYSLSSISNFDSTPPSPLQKFTGHEQGISDLATIRLWDVPTATSLKTLIGHTNYVFCIN  107 (262)
Q Consensus        28 ~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~i~v~d~~~~~~~~~~~~~~~~v~~~~  107 (262)
                      .+.|.++++++..  .|+.+.+||..+...                        ..+.+      -..+..|...|.++.
T Consensus        21 ~~~W~~d~~~~~~--~~~~~~~~~~~t~~~------------------------~~~~~------~~~~~~~~~~i~~~~   68 (470)
T d2bgra1          21 SLRWISDHEYLYK--QENNILVFNAEYGNS------------------------SVFLE------NSTFDEFGHSINDYS   68 (470)
T ss_dssp             CCEECSSSEEEEE--SSSCEEEEETTTCCE------------------------EEEEC------TTTTTTSSSCCCEEE
T ss_pred             CCEeCCCCEEEEE--cCCcEEEEECCCCCE------------------------EEEEc------hhhhhhccCccceeE
Confidence            5779999987764  367777776644211                        01111      013445667899999


Q ss_pred             EeCCCCEEEeecC---------CCeEEEEECCCCeeeeeeecCCCCeeeEEEccCCCEEEEEeCCCeEEEEeCCCCCccE
Q 042146          108 FNPQSNRIVSDTF---------NETIRIWDIKTGKCLKVLPAHSDPVTAIDFNRDGTMIVTSSYDGLYRILDASTPNGKF  178 (262)
Q Consensus       108 ~~~~~~~l~~~~~---------dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~  178 (262)
                      |+||+++|+.++.         ++.+.+||+.+++. ..+..+...+..+.|||||+.++... ++.             
T Consensus        69 ~SpDg~~i~~~~~~~~~~r~s~~~~~~l~d~~~~~~-~~l~~~~~~~~~~~~SPDG~~ia~~~-~~~-------------  133 (470)
T d2bgra1          69 ISPDGQFILLEYNYVKQWRHSYTASYDIYDLNKRQL-ITEERIPNNTQWVTWSPVGHKLAYVW-NND-------------  133 (470)
T ss_dssp             ECTTSSEEEEEEEEEECSSSCEEEEEEEEETTTTEE-CCSSCCCTTEEEEEECSSTTCEEEEE-TTE-------------
T ss_pred             ECCCCCEEEEEECCcceeeeccCceEEEEECCCCcc-cccccCCccccccccccCcceeeEee-ccc-------------
Confidence            9999999988743         56789999998874 55677888999999999999888753 334             


Q ss_pred             EEEEcCCCeEEEEecCCCceeeEEeccCCceeEEEEEEecCCCeeEEccccceEEEEEcCCCCeEEEeeecCCCcEEEEe
Q 042146          179 ILVGTLDNTLRLWNYSTRKILKTYSGYTNSKYCISSTFSVTNGKYIVSHRDPVISVASHPAKNIIASGALDNDRTMKIWT  258 (262)
Q Consensus       179 l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~d~d~~i~iw~  258 (262)
                               +++|+..+++..+............ ..   .+........+....+.|||||+.|+....| +..+..|.
T Consensus       134 ---------l~~~~~~~g~~~~~t~~~~~~~~~~-g~---~d~~~~~~~~~~~~~~~wSPDGk~ia~~~~d-~~~v~~~~  199 (470)
T d2bgra1         134 ---------IYVKIEPNLPSYRITWTGKEDIIYN-GI---TDWVYEEEVFSAYSALWWSPNGTFLAYAQFN-DTEVPLIE  199 (470)
T ss_dssp             ---------EEEESSTTSCCEECCSCCBTTTEEE-SB---CCHHHHHHTSSSSBCEEECTTSSEEEEEEEE-CTTCCEEE
T ss_pred             ---------ceEEECCCCceeeeeeccCCCcccc-cc---cceeeeeeecCCccccEECCCCCccceeEec-CCcCceEE
Confidence                     4455554444333222111100000 00   0000000023345678899999999998854 45566665


Q ss_pred             e
Q 042146          259 Q  259 (262)
Q Consensus       259 ~  259 (262)
                      +
T Consensus       200 ~  200 (470)
T d2bgra1         200 Y  200 (470)
T ss_dssp             E
T ss_pred             E
Confidence            4

>d1q7fa_ b.68.9.1 (A:) Brain tumor cg10719-pa {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: NHL repeat
family: NHL repeat
domain: Brain tumor cg10719-pa
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.34  E-value=1.9e-09  Score=79.71  Aligned_cols=210  Identities=10%  Similarity=0.165  Sum_probs=133.1

Q ss_pred             ceEEEEEccCCCeEEEecCCCeEEEeecCCCCCCCCCC---CCCCc------cccCC-cccc----ccceeEEEEecCCC
Q 042146           25 AVSYVKFSHDGRLLTSSSAEKTLLTYSLSSISNFDSTP---PSPLQ------KFTGH-EQGI----SDLATIRLWDVPTA   90 (262)
Q Consensus        25 ~v~~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~---~~~~~------~~~~~-~~~v----~~~~~i~v~d~~~~   90 (262)
                      ....++++++++.+++-...+.|++||.+.........   .....      .+... ...+    .....|..++. .+
T Consensus        24 ~P~gvavd~dg~i~VaD~~n~rI~v~d~~G~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~i~~~~~-~g  102 (279)
T d1q7fa_          24 EPSGVAVNAQNDIIVADTNNHRIQIFDKEGRFKFQFGECGKRDSQLLYPNRVAVVRNSGDIIVTERSPTHQIQIYNQ-YG  102 (279)
T ss_dssp             CEEEEEECTTCCEEEEEGGGTEEEEECTTSCEEEEECCBSSSTTCBSSEEEEEEETTTTEEEEEECGGGCEEEEECT-TS
T ss_pred             CccEEEEcCCCCEEEEECCCCEEEEEeCCCCEEEEecccCCCcccccccccccccccccccceeccCCccccccccc-cc
Confidence            46899999999988887778899999876421100000   00000      00000 0000    01114555554 34


Q ss_pred             ccceecc-cCCcceEEEEEeCCCCEEEeecCCCeEEEEECCCCeeeeee--ecCCCCeeeEEEccCCCEEEEEeCCCeEE
Q 042146           91 TSLKTLI-GHTNYVFCINFNPQSNRIVSDTFNETIRIWDIKTGKCLKVL--PAHSDPVTAIDFNRDGTMIVTSSYDGLYR  167 (262)
Q Consensus        91 ~~~~~~~-~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~--~~~~~~v~~~~~~~~~~~l~~~~~dg~i~  167 (262)
                      .....+. ........+++.+++.++++....+.+.+++.. ++.+..+  ..+......+++.++++.+++....+.|.
T Consensus       103 ~~~~~~~~~~~~~p~~~avd~~G~i~v~~~~~~~~~~~~~~-g~~~~~~g~~~~~~~~~~i~~d~~g~i~v~d~~~~~V~  181 (279)
T d1q7fa_         103 QFVRKFGATILQHPRGVTVDNKGRIIVVECKVMRVIIFDQN-GNVLHKFGCSKHLEFPNGVVVNDKQEIFISDNRAHCVK  181 (279)
T ss_dssp             CEEEEECTTTCSCEEEEEECTTSCEEEEETTTTEEEEECTT-SCEEEEEECTTTCSSEEEEEECSSSEEEEEEGGGTEEE
T ss_pred             cceeecCCCcccccceeccccCCcEEEEeeccceeeEeccC-CceeecccccccccccceeeeccceeEEeeecccccee
Confidence            4444432 234557789999999988888888889999854 5666655  23456778899999999888888899999


Q ss_pred             EEeCCC---------------------CCccEEEEEcC-CCeEEEEecCCCceeeEEeccCCceeEEEEEEecCCCeeEE
Q 042146          168 ILDAST---------------------PNGKFILVGTL-DNTLRLWNYSTRKILKTYSGYTNSKYCISSTFSVTNGKYIV  225 (262)
Q Consensus       168 ~~d~~~---------------------~~~~~l~~~~~-dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  225 (262)
                      +||...                     ++++.+++-.. ++.|.+|+. +|+.+..+....                   
T Consensus       182 ~~d~~G~~~~~~g~~g~~~~P~giavD~~G~i~Vad~~~~~~v~~f~~-~G~~~~~~~~~~-------------------  241 (279)
T d1q7fa_         182 VFNYEGQYLRQIGGEGITNYPIGVGINSNGEILIADNHNNFNLTIFTQ-DGQLISALESKV-------------------  241 (279)
T ss_dssp             EEETTCCEEEEESCTTTSCSEEEEEECTTCCEEEEECSSSCEEEEECT-TSCEEEEEEESS-------------------
T ss_pred             eeecCCceeeeecccccccCCcccccccCCeEEEEECCCCcEEEEECC-CCCEEEEEeCCC-------------------
Confidence            998653                     45555555432 345777763 466665554311                   


Q ss_pred             ccccceEEEEEcCCCCeEEEeeecCCCcEEEEeec
Q 042146          226 SHRDPVISVASHPAKNIIASGALDNDRTMKIWTQE  260 (262)
Q Consensus       226 ~~~~~v~~~~~~p~~~~l~~~~~d~d~~i~iw~~~  260 (262)
                       .......+++.|+|.+++ ++  .++.|++|+..
T Consensus       242 -~~~~p~~vav~~dG~l~V-~~--~n~~v~~fr~~  272 (279)
T d1q7fa_         242 -KHAQCFDVALMDDGSVVL-AS--KDYRLYIYRYV  272 (279)
T ss_dssp             -CCSCEEEEEEETTTEEEE-EE--TTTEEEEEECS
T ss_pred             -CCCCEeEEEEeCCCcEEE-Ee--CCCeEEEEEee
Confidence             223567899999997655 45  67899999875

>d2p4oa1 b.68.6.3 (A:4-305) Hypothetical protein All0351 homologue {Nostoc punctiforme [TaxId: 272131]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: All0351-like
domain: Hypothetical protein All0351 homologue
species: Nostoc punctiforme [TaxId: 272131]

Probab=99.29  E-value=6.9e-10  Score=83.14  Aligned_cols=189  Identities=9%  Similarity=0.066  Sum_probs=123.3

Q ss_pred             ccccceecccCcCceEEEEEccCCCeEEEecCCCeEEEeecCCCCCCCCCCCCCCccccCCccccccceeEEEEecCCCc
Q 042146           12 PYTLTQTLNGHLRAVSYVKFSHDGRLLTSSSAEKTLLTYSLSSISNFDSTPPSPLQKFTGHEQGISDLATIRLWDVPTAT   91 (262)
Q Consensus        12 ~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~i~v~d~~~~~   91 (262)
                      +.+.+..+... ..+..++++|||+++++...+++|..|+.+.                                    +
T Consensus        17 ~~~v~~~~p~~-~~~e~iAv~pdG~l~vt~~~~~~I~~i~p~g------------------------------------~   59 (302)
T d2p4oa1          17 PAKIITSFPVN-TFLENLASAPDGTIFVTNHEVGEIVSITPDG------------------------------------N   59 (302)
T ss_dssp             CEEEEEEECTT-CCEEEEEECTTSCEEEEETTTTEEEEECTTC------------------------------------C
T ss_pred             cccEEEECCCC-CCcCCEEECCCCCEEEEeCCCCEEEEEeCCC------------------------------------C
Confidence            44555555432 2578999999999999999899887774321                                    1


Q ss_pred             cceecccCCcceEEEEEeCCCCEEEeecCCCeEEEEECCCCe--eeeee-ecCCCCeeeEEEccCCCEEEEEeCCCeEEE
Q 042146           92 SLKTLIGHTNYVFCINFNPQSNRIVSDTFNETIRIWDIKTGK--CLKVL-PAHSDPVTAIDFNRDGTMIVTSSYDGLYRI  168 (262)
Q Consensus        92 ~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~--~~~~~-~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~  168 (262)
                       ...+......+.+++|.|+|+++++...++.+..++.....  ..... .........+++.++++++++.+.++.+..
T Consensus        60 -~~~~~~~~~~~~gla~~~dG~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~i~~~~~g~~~v~~~~~~~i~~  138 (302)
T d2p4oa1          60 -QQIHATVEGKVSGLAFTSNGDLVATGWNADSIPVVSLVKSDGTVETLLTLPDAIFLNGITPLSDTQYLTADSYRGAIWL  138 (302)
T ss_dssp             -EEEEEECSSEEEEEEECTTSCEEEEEECTTSCEEEEEECTTSCEEEEEECTTCSCEEEEEESSSSEEEEEETTTTEEEE
T ss_pred             -EEEEEcCCCCcceEEEcCCCCeEEEecCCceEEEEEecccccceeeccccCCccccceeEEccCCCEEeecccccccee
Confidence             12223344678999999999999998888888888765432  21111 123456789999999999988888888888


Q ss_pred             EeCCC-----------------------------CCccEEEEEcCCCeEEEEecCCCceeeEEeccCCceeEEEEEEecC
Q 042146          169 LDAST-----------------------------PNGKFILVGTLDNTLRLWNYSTRKILKTYSGYTNSKYCISSTFSVT  219 (262)
Q Consensus       169 ~d~~~-----------------------------~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~  219 (262)
                      +|...                             ..+.++++.+..+.|+.++............               
T Consensus       139 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ngi~~~~~~l~~~~~~~~~i~~~~~~~~~~~~~~~~---------------  203 (302)
T d2p4oa1         139 IDVVQPSGSIWLEHPMLARSNSESVFPAANGLKRFGNFLYVSNTEKMLLLRIPVDSTDKPGEPEI---------------  203 (302)
T ss_dssp             EETTTTEEEEEEECGGGSCSSTTCCSCSEEEEEEETTEEEEEETTTTEEEEEEBCTTSCBCCCEE---------------
T ss_pred             eeccCCcceeEecCCccceeeccCcccccccccccCCceeeecCCCCeEEecccccccccccccc---------------
Confidence            88665                             1223444555666666666554322211110               


Q ss_pred             CCeeEEccccceEEEEEcCCCCeEEEeeecCCCcEEEEeec
Q 042146          220 NGKYIVSHRDPVISVASHPAKNIIASGALDNDRTMKIWTQE  260 (262)
Q Consensus       220 ~~~~~~~~~~~v~~~~~~p~~~~l~~~~~d~d~~i~iw~~~  260 (262)
                           .........++++++|.++++..  .++.|..++.+
T Consensus       204 -----~~~~~~pdgia~d~dG~l~va~~--~~~~V~~i~p~  237 (302)
T d2p4oa1         204 -----FVEQTNIDDFAFDVEGNLYGATH--IYNSVVRIAPD  237 (302)
T ss_dssp             -----EEESCCCSSEEEBTTCCEEEECB--TTCCEEEECTT
T ss_pred             -----ccCCCCCcceEECCCCCEEEEEc--CCCcEEEECCC
Confidence                 00233445688888888777766  67777777654

>d1qnia2 b.69.3.1 (A:10-450) Nitrous oxide reductase, N-terminal domain {Pseudomonas nautica [TaxId: 2743]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nitrous oxide reductase, N-terminal domain
family: Nitrous oxide reductase, N-terminal domain
domain: Nitrous oxide reductase, N-terminal domain
species: Pseudomonas nautica [TaxId: 2743]

Probab=99.28  E-value=5.7e-11  Score=92.46  Aligned_cols=154  Identities=8%  Similarity=0.057  Sum_probs=104.2

Q ss_pred             EEEEecCCCccceecc-cCCcceEEEEEeCCCCE--EEeecCCC-----------------eEEEEECCCCeeeeeeecC
Q 042146           82 IRLWDVPTATSLKTLI-GHTNYVFCINFNPQSNR--IVSDTFNE-----------------TIRIWDIKTGKCLKVLPAH  141 (262)
Q Consensus        82 i~v~d~~~~~~~~~~~-~~~~~v~~~~~~~~~~~--l~~~~~dg-----------------~i~vwd~~~~~~~~~~~~~  141 (262)
                      |.++|+.+.+....+. .+...+..++|+|+++.  ++..+.+.                 .+..+|..+.+....+...
T Consensus        96 VavIDl~t~k~~~ii~iP~g~gphgi~~spdg~t~YV~~~~~~~v~~~~dg~~~~~~~~~~~~~~iD~~t~~v~~qI~v~  175 (441)
T d1qnia2          96 VARIRLDIMKTDKITHIPNVQAIHGLRLQKVPKTNYVFCNAEFVIPQPNDGTDFSLDNSYTMFTAIDAETMDVAWQVIVD  175 (441)
T ss_dssp             EEEEETTTTEEEEEEECTTCCCEEEEEECCSSBCCEEEEEECSCEESSCSSSCCCGGGEEEEEEEEETTTCSEEEEEEES
T ss_pred             EEEEECCCCcEeeEEecCCCCCccceEEeccCCEEEEEeccCCcccccCcccccccccccceEEeecCccceeeEEEecC
Confidence            4444556666555443 35667889999999884  44444332                 2456888888877777643


Q ss_pred             CCCeeeEEEccCCCEEEEEeCCC-eEEEEeCCC-------------------CCccEEEEEcCCCeEEEEecCCCceeeE
Q 042146          142 SDPVTAIDFNRDGTMIVTSSYDG-LYRILDAST-------------------PNGKFILVGTLDNTLRLWNYSTRKILKT  201 (262)
Q Consensus       142 ~~~v~~~~~~~~~~~l~~~~~dg-~i~~~d~~~-------------------~~~~~l~~~~~dg~i~i~d~~~~~~~~~  201 (262)
                       +....+.++|+|+++++++.+. .+..++..+                   ++++++..+ .++.+.+++....+.+..
T Consensus       176 -~~p~~v~~spdGk~a~vt~~nse~~~~id~~t~~~~d~i~v~n~p~~~~~~~dGk~~~v~-~~~v~vvd~~~~~~v~~~  253 (441)
T d1qnia2         176 -GNLDNTDADYTGKYATSTCYNSERAVDLAGTMRNDRDWVVVFNVERIAAAVKAGNFKTIG-DSKVPVVDGRGESEFTRY  253 (441)
T ss_dssp             -SCCCCEEECSSSSEEEEEESCTTCCSSHHHHTCSSBCEEEEEEHHHHHHHHHTTCCBCCT-TCCCCEEECSSSCSSEEE
T ss_pred             -CCccceEECCCCCEEEEEecCCCceEEEeccCcceEEEEEeCCccceEEEecCCCEEEeC-CCCcEEEEcccCCceEEE
Confidence             4578999999999988887653 222222111                   677776554 467777887777677777


Q ss_pred             EeccCCceeEEEEEEecCCCeeEEccccceEEEEEcCCCCeEEEeeecCCCcEEEEeecc
Q 042146          202 YSGYTNSKYCISSTFSVTNGKYIVSHRDPVISVASHPAKNIIASGALDNDRTMKIWTQEK  261 (262)
Q Consensus       202 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~d~d~~i~iw~~~~  261 (262)
                      ++.                      . .....+.++|||+++++++. .+++|.+||+++
T Consensus       254 IPv----------------------g-ksPhGv~vSPDGkyl~~~~~-~~~tvsv~d~~k  289 (441)
T d1qnia2         254 IPV----------------------P-KNPHGLNTSPDGKYFIANGK-LSPTVSVIAIDK  289 (441)
T ss_dssp             ECC----------------------B-SSCCCEEECTTSCEEEEECT-TSSBEEEEEGGG
T ss_pred             EeC----------------------C-CCccCceECCCCCEEEEeCC-cCCcEEEEEeeh
Confidence            764                      2 23467899999998876654 689999999864

>d1mdah_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.27  E-value=4.1e-11  Score=92.47  Aligned_cols=142  Identities=8%  Similarity=-0.077  Sum_probs=102.5

Q ss_pred             CcCceEEEEEccCCCe---EEEecCCCeEEEeecCCCCCCCCCCCCCCccccCCccccccceeEEEEecCCCccceeccc
Q 042146           22 HLRAVSYVKFSHDGRL---LTSSSAEKTLLTYSLSSISNFDSTPPSPLQKFTGHEQGISDLATIRLWDVPTATSLKTLIG   98 (262)
Q Consensus        22 h~~~v~~~~~~~~~~~---l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~i~v~d~~~~~~~~~~~~   98 (262)
                      +.++...++..++++.   .+....++...+|                                 ++|..+++.+..+..
T Consensus        18 ~~g~~~~~a~~~~~~~~~v~~~~~~~g~~~~~---------------------------------~~d~~~~~~~~~~~~   64 (368)
T d1mdah_          18 SDGSSCDHGPGAISRRSHITLPAYFAGTTENW---------------------------------VSCAGCGVTLGHSLG   64 (368)
T ss_dssp             CCCCCBCCCCCCCTTEEEEEECTTTCSSEEEE---------------------------------EEETTTTEEEEEEEE
T ss_pred             cCCCccccccCCCCcceeEEeeccCCCcceEE---------------------------------EEeCCCCcEEEEEeC
Confidence            4555556666777774   2334566666555                                 667788888777766


Q ss_pred             CCcceEEEEEeCCCCEEEeec----------CCCeEEEEECCCCeeeeeeecCCC-------CeeeEEEccCCCEEEEEe
Q 042146           99 HTNYVFCINFNPQSNRIVSDT----------FNETIRIWDIKTGKCLKVLPAHSD-------PVTAIDFNRDGTMIVTSS  161 (262)
Q Consensus        99 ~~~~v~~~~~~~~~~~l~~~~----------~dg~i~vwd~~~~~~~~~~~~~~~-------~v~~~~~~~~~~~l~~~~  161 (262)
                      +...  .++|+|||+.+++.+          .|+.|.+||..+++++..+..+..       ....++|+|||++|+++.
T Consensus        65 ~~~~--~~a~spDg~~i~~~~~~~~~~~~g~~d~~v~v~D~~t~~~~~~i~~p~~~~~~~g~~p~~~a~SpDGk~l~va~  142 (368)
T d1mdah_          65 AFLS--LAVAGHSGSDFALASTSFARSAKGKRTDYVEVFDPVTFLPIADIELPDAPRFSVGPRVHIIGNCASSACLLFFL  142 (368)
T ss_dssp             CTTC--EEEECTTSSCEEEEEEEETTTTSSSEEEEEEEECTTTCCEEEEEEETTSCSCCBSCCTTSEEECTTSSCEEEEE
T ss_pred             CCCC--cceECCCCCEEEEEcccCccccccccCCeEEEEECCCCcEeeeecCCccceecccCCccceEECCCCCEEEEEe
Confidence            5544  588999999888643          477899999999998887754432       235699999999988776


Q ss_pred             -CCCeEEEEeCCC-----------------CCccEEEEEcCCCeEEEEecCCCce
Q 042146          162 -YDGLYRILDAST-----------------PNGKFILVGTLDNTLRLWNYSTRKI  198 (262)
Q Consensus       162 -~dg~i~~~d~~~-----------------~~~~~l~~~~~dg~i~i~d~~~~~~  198 (262)
                       .++.+.+||+..                 .....+++.+.||.+.++++.....
T Consensus       143 ~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~Dg~~~~~~~~~~~~  197 (368)
T d1mdah_         143 FGSSAAAGLSVPGASDDQLTKSASCFHIHPGAAATHYLGSCPASLAASDLAAAPA  197 (368)
T ss_dssp             CSSSCEEEEEETTTEEEEEEECSSCCCCEEEETTEEECCCCTTSCEEEECCSSCC
T ss_pred             CCCCeEEEEECCCCcEeEEeeccCcceEccCCCceEEEEcCCCCEEEEEecCCce
Confidence             579999999876                 1234566778889888888775543

>d1qnia2 b.69.3.1 (A:10-450) Nitrous oxide reductase, N-terminal domain {Pseudomonas nautica [TaxId: 2743]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nitrous oxide reductase, N-terminal domain
family: Nitrous oxide reductase, N-terminal domain
domain: Nitrous oxide reductase, N-terminal domain
species: Pseudomonas nautica [TaxId: 2743]

Probab=99.17  E-value=4.9e-10  Score=87.13  Aligned_cols=207  Identities=8%  Similarity=0.079  Sum_probs=127.8

Q ss_pred             CCceeeec--ccccceecc-cCcCceEEEEEccCCC--eEEEecCCCeEEEeecCCCCCCCCCCCCCCccccCCcccccc
Q 042146            4 DRSLESFR--PYTLTQTLN-GHLRAVSYVKFSHDGR--LLTSSSAEKTLLTYSLSSISNFDSTPPSPLQKFTGHEQGISD   78 (262)
Q Consensus         4 d~~i~~~~--~~~~~~~~~-~h~~~v~~~~~~~~~~--~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~   78 (262)
                      ++.|..++  .++..+.+. .+...+..++|+|+++  |++..+.+..-...+-.           ...       ....
T Consensus        93 ~~rVavIDl~t~k~~~ii~iP~g~gphgi~~spdg~t~YV~~~~~~~v~~~~dg~-----------~~~-------~~~~  154 (441)
T d1qnia2          93 NTRVARIRLDIMKTDKITHIPNVQAIHGLRLQKVPKTNYVFCNAEFVIPQPNDGT-----------DFS-------LDNS  154 (441)
T ss_dssp             TTEEEEEETTTTEEEEEEECTTCCCEEEEEECCSSBCCEEEEEECSCEESSCSSS-----------CCC-------GGGE
T ss_pred             CCEEEEEECCCCcEeeEEecCCCCCccceEEeccCCEEEEEeccCCcccccCccc-----------ccc-------cccc
Confidence            34455554  455555554 3567899999999998  55544443321111000           000       0001


Q ss_pred             ceeEEEEecCCCccceecccCCcceEEEEEeCCCCEEEeecC--------------------------------------
Q 042146           79 LATIRLWDVPTATSLKTLIGHTNYVFCINFNPQSNRIVSDTF--------------------------------------  120 (262)
Q Consensus        79 ~~~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~--------------------------------------  120 (262)
                      ...+..+|..+.+...++... .....+.++|+|+++++.+.                                      
T Consensus       155 ~~~~~~iD~~t~~v~~qI~v~-~~p~~v~~spdGk~a~vt~~nse~~~~id~~t~~~~d~i~v~n~p~~~~~~~dGk~~~  233 (441)
T d1qnia2         155 YTMFTAIDAETMDVAWQVIVD-GNLDNTDADYTGKYATSTCYNSERAVDLAGTMRNDRDWVVVFNVERIAAAVKAGNFKT  233 (441)
T ss_dssp             EEEEEEEETTTCSEEEEEEES-SCCCCEEECSSSSEEEEEESCTTCCSSHHHHTCSSBCEEEEEEHHHHHHHHHTTCCBC
T ss_pred             cceEEeecCccceeeEEEecC-CCccceEECCCCCEEEEEecCCCceEEEeccCcceEEEEEeCCccceEEEecCCCEEE
Confidence            124556676666655554422 34566777777777665543                                      


Q ss_pred             ---CCeEEEEECCCCeeeeeeecCCCCeeeEEEccCCCEEE-EEeCCCeEEEEeCCC-----------------------
Q 042146          121 ---NETIRIWDIKTGKCLKVLPAHSDPVTAIDFNRDGTMIV-TSSYDGLYRILDAST-----------------------  173 (262)
Q Consensus       121 ---dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~-~~~~dg~i~~~d~~~-----------------------  173 (262)
                         ++.+.+++....+.+..+..++. ...+.++|||++++ ++..+++|.+||+..                       
T Consensus       234 v~~~~v~vvd~~~~~~v~~~IPvgks-PhGv~vSPDGkyl~~~~~~~~tvsv~d~~k~~~~~~~~~~~~~~~~~~~~~gl  312 (441)
T d1qnia2         234 IGDSKVPVVDGRGESEFTRYIPVPKN-PHGLNTSPDGKYFIANGKLSPTVSVIAIDKLDDLFEDKIELRDTIVAEPELGL  312 (441)
T ss_dssp             CTTCCCCEEECSSSCSSEEEECCBSS-CCCEEECTTSCEEEEECTTSSBEEEEEGGGHHHHTTTSSCGGGGEEECCBCCS
T ss_pred             eCCCCcEEEEcccCCceEEEEeCCCC-ccCceECCCCCEEEEeCCcCCcEEEEEeehhhhHhhccCCcceEEEeeccccc
Confidence               34455555555556666666555 47899999999765 456899999999765                       


Q ss_pred             --------CCccEEEEEcCCCeEEEEecCCC----------ceeeEEeccCCceeEEEEEEecCCCeeEEccccceEEEE
Q 042146          174 --------PNGKFILVGTLDNTLRLWNYSTR----------KILKTYSGYTNSKYCISSTFSVTNGKYIVSHRDPVISVA  235 (262)
Q Consensus       174 --------~~~~~l~~~~~dg~i~i~d~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~  235 (262)
                              +++..+.+...|..|..|++...          ..+..+..|                 +..+|...+.+.+
T Consensus       313 gplh~~fd~~g~~yts~~~ds~v~kw~~~~~~~~~~~~~~~~v~~~~~v~-----------------y~~GH~~~~~~~t  375 (441)
T d1qnia2         313 GPLHTTFDGRGNAYTTLFIDSQVCKWNIADAIKHYNGDRVNYIRQKLDVQ-----------------YQPGHNHASLTES  375 (441)
T ss_dssp             CEEEEEECSSSEEEEEETTTTEEEEEEHHHHHHHHTTCCCCCEEEEEECS-----------------SCEEEEEETTTTS
T ss_pred             CcccceecCCceEEEcccccceEEEeccchhhhhhccCCCceeEeccccc-----------------cCCCCCccccccc
Confidence                    56777788889999999997421          122222221                 1123777788888


Q ss_pred             EcCCCCeEEEee
Q 042146          236 SHPAKNIIASGA  247 (262)
Q Consensus       236 ~~p~~~~l~~~~  247 (262)
                      ++|+|++|++++
T Consensus       376 ~~pdGk~l~s~~  387 (441)
T d1qnia2         376 RDADGKWLVVLS  387 (441)
T ss_dssp             TTCCCCEEEEEE
T ss_pred             cCCCCcEEEecC
Confidence            999999999994

>d1rwia_ b.68.9.1 (A:) Serine/threonine-protein kinase PknD {Mycobacterium tuberculosis [TaxId: 1773]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: NHL repeat
family: NHL repeat
domain: Serine/threonine-protein kinase PknD
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.11  E-value=5.9e-08  Score=70.75  Aligned_cols=221  Identities=11%  Similarity=0.078  Sum_probs=114.5

Q ss_pred             CceEEEEEccCCCeEEEe-cCCCeEEEeecCCCCCCCCCCC---CCCccccCCcccccc----ceeEEEEecCCCcccee
Q 042146           24 RAVSYVKFSHDGRLLTSS-SAEKTLLTYSLSSISNFDSTPP---SPLQKFTGHEQGISD----LATIRLWDVPTATSLKT   95 (262)
Q Consensus        24 ~~v~~~~~~~~~~~l~s~-~~d~~i~iw~~~~~~~~~~~~~---~~~~~~~~~~~~v~~----~~~i~v~d~~~~~~~~~   95 (262)
                      -.-..+++.++|+.+++. +..+.+..++............   .+..........+..    ...+++++..+...+..
T Consensus        14 ~~P~~vavd~dG~i~v~~~~~~~~i~~~~~~~~~~~~~~~~~~~~p~gvav~~~g~i~v~d~~~~~i~~~~~~~~~~~~~   93 (260)
T d1rwia_          14 LSPSGVAVDSAGNVYVTSEGMYGRVVKLATGSTGTTVLPFNGLYQPQGLAVDGAGTVYVTDFNNRVVTLAAGSNNQTVLP   93 (260)
T ss_dssp             CCEEEEEECTTCCEEEEECSSSCEEEEEC----CEEECCCCSCCSCCCEEECTTCCEEEEETTTEEEEECTTCSCCEECC
T ss_pred             CCCCEEEEcCCCCEEEEEcCCCCEEEEEcCCCceEEEeccCCccCceEEEEcCCCCEEEeeeeeceeeeeeeccceeeee
Confidence            345799999999966654 5567777776544221111000   000000001111110    01344444333333322


Q ss_pred             cccCCcceEEEEEeCCCCEEEeecCCCeEEEEECCCCeeeeeeecCCCCeeeEEEccCCCEEEEEeCCCeEEEEeCCC--
Q 042146           96 LIGHTNYVFCINFNPQSNRIVSDTFNETIRIWDIKTGKCLKVLPAHSDPVTAIDFNRDGTMIVTSSYDGLYRILDAST--  173 (262)
Q Consensus        96 ~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~d~~~--  173 (262)
                      .. .......++++++++++++-.....+..++...................+++.|+++.+++...++.|..+|...  
T Consensus        94 ~~-~~~~p~~iavd~~g~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~~i~~~~~g~~~v~~~~~~~i~~~d~~~~~  172 (260)
T d1rwia_          94 FD-GLNYPEGLAVDTQGAVYVADRGNNRVVKLAAGSKTQTVLPFTGLNDPDGVAVDNSGNVYVTDTDNNRVVKLEAESNN  172 (260)
T ss_dssp             CC-SCCSEEEEEECTTCCEEEEEGGGTEEEEECTTCSSCEECCCCSCCSCCEEEECTTCCEEEEEGGGTEEEEECTTTCC
T ss_pred             ee-eeeecccccccccceeEeeccccccccccccccceeeeeeecccCCcceeeecCCCCEeeeccccccccccccccce
Confidence            22 234578999999999888877777788887654432222112234557899999999888888888999998765  


Q ss_pred             --------CCccEEEEEcCCCeEEEEecCCCceeeEEeccCCceeEEEEEEecCCCeeEEccccceEEEEEcCCCCeEEE
Q 042146          174 --------PNGKFILVGTLDNTLRLWNYSTRKILKTYSGYTNSKYCISSTFSVTNGKYIVSHRDPVISVASHPAKNIIAS  245 (262)
Q Consensus       174 --------~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~  245 (262)
                              .....=++-..+|.|.+=|...++....... .......      .     ...-.....|++++++.++++
T Consensus       173 ~~~~~~~~~~~p~gi~~d~~g~l~vsd~~~~~i~~~~~~-~~~~~~~------~-----~~~~~~P~~i~~d~~g~l~va  240 (260)
T d1rwia_         173 QVVLPFTDITAPWGIAVDEAGTVYVTEHNTNQVVKLLAG-STTSTVL------P-----FTGLNTPLAVAVDSDRTVYVA  240 (260)
T ss_dssp             EEECCCSSCCSEEEEEECTTCCEEEEETTTTEEEEECTT-CSCCEEC------C-----CCSCCCEEEEEECTTCCEEEE
T ss_pred             eeeeeccccCCCccceeeeeeeeeeeecCCCEEEEEeCC-CCeEEEE------c-----cCCCCCeEEEEEeCCCCEEEE
Confidence                    1111112222344444444433332221111 0000000      0     002245689999999987777


Q ss_pred             eeecCCCcEEEEee
Q 042146          246 GALDNDRTMKIWTQ  259 (262)
Q Consensus       246 ~~~d~d~~i~iw~~  259 (262)
                      -.  .++.|+..+.
T Consensus       241 d~--~~~rI~~i~~  252 (260)
T d1rwia_         241 DR--GNDRVVKLTS  252 (260)
T ss_dssp             EG--GGTEEEEECC
T ss_pred             EC--CCCEEEEEeC
Confidence            65  5676665544

>d1jofa_ b.69.10.1 (A:) 3-carboxy-cis,cis-mucoante lactonizing enzyme {Neurospora crassa [TaxId: 5141]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: 3-carboxy-cis,cis-mucoante lactonizing enzyme
family: 3-carboxy-cis,cis-mucoante lactonizing enzyme
domain: 3-carboxy-cis,cis-mucoante lactonizing enzyme
species: Neurospora crassa [TaxId: 5141]

Probab=99.10  E-value=1.9e-08  Score=77.22  Aligned_cols=143  Identities=8%  Similarity=0.081  Sum_probs=88.2

Q ss_pred             ceEEEEEeCCCCEEEeecC-CCeEEEEECCCC-eee--eee--ecCCCCeeeEEEccCCCEEEEEe-CCCeEEEEeCCC-
Q 042146          102 YVFCINFNPQSNRIVSDTF-NETIRIWDIKTG-KCL--KVL--PAHSDPVTAIDFNRDGTMIVTSS-YDGLYRILDAST-  173 (262)
Q Consensus       102 ~v~~~~~~~~~~~l~~~~~-dg~i~vwd~~~~-~~~--~~~--~~~~~~v~~~~~~~~~~~l~~~~-~dg~i~~~d~~~-  173 (262)
                      .+.++.|+|+|++++++.. ...|.+|+.... ...  ...  .........++|+|+++++++.. .+++|.+|+... 
T Consensus       146 h~h~v~~sPdG~~l~v~d~g~d~v~~~~~~~~g~~~~~~~~~~~~~g~gPr~i~f~pdg~~~yv~~e~~~~V~v~~~~~~  225 (365)
T d1jofa_         146 GIHGMVFDPTETYLYSADLTANKLWTHRKLASGEVELVGSVDAPDPGDHPRWVAMHPTGNYLYALMEAGNRICEYVIDPA  225 (365)
T ss_dssp             CEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCEEEEEEEECSSTTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTT
T ss_pred             cceEEEECCCCCEEEEeeCCCCEEEEEEccCCCceeeccceeecCCCCceEEEEECCCCceEEEeccCCCEEEEEEecCC
Confidence            4789999999998877653 457888876432 221  111  12345678999999999875554 688999998654 


Q ss_pred             --------------------------------------CCccEEEEEcC------CCeEEEEecCCCceeeEEeccCCce
Q 042146          174 --------------------------------------PNGKFILVGTL------DNTLRLWNYSTRKILKTYSGYTNSK  209 (262)
Q Consensus       174 --------------------------------------~~~~~l~~~~~------dg~i~i~d~~~~~~~~~~~~~~~~~  209 (262)
                                                            |++++|+++..      .+.|..|++.....+.....     
T Consensus       226 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~spdG~~lyvsnr~~~~~~~~~i~~~~~~~~g~~~~~~~-----  300 (365)
T d1jofa_         226 THMPVYTHHSFPLIPPGIPDRDPETGKGLYRADVCALTFSGKYMFASSRANKFELQGYIAGFKLRDCGSIEKQLF-----  300 (365)
T ss_dssp             TCCEEEEEEEEESSCTTCCCBCTTTSSBSEEEEEEEECTTSSEEEEEEEESSTTSCCEEEEEEECTTSCEEEEEE-----
T ss_pred             CceEEEEeeeeccccccccccccccccccCCccceEECCCCCEEEEEcccCCCccceEEEEEEecCCCceeeEeE-----
Confidence                                                  56666655531      12244444433211111100     


Q ss_pred             eEEEEEEecCCCeeEEccccceEEEEEcC-CCCeEEEeeecCCCcEEEEeecc
Q 042146          210 YCISSTFSVTNGKYIVSHRDPVISVASHP-AKNIIASGALDNDRTMKIWTQEK  261 (262)
Q Consensus       210 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~p-~~~~l~~~~~d~d~~i~iw~~~~  261 (262)
                           ...      ..........++++| +|++|+++.. .++.|.+|+++.
T Consensus       301 -----~~~------~~~~G~~p~~i~~~p~~G~~l~va~~-~s~~v~v~~~~~  341 (365)
T d1jofa_         301 -----LSP------TPTSGGHSNAVSPCPWSDEWMAITDD-QEGWLEIYRWKD  341 (365)
T ss_dssp             -----EEE------CSSCCTTCCCEEECTTCTTEEEEECS-SSCEEEEEEEET
T ss_pred             -----eeE------EEcCCCCccEEEecCCCCCEEEEEeC-CCCeEEEEEEeC
Confidence                 000      000234567899998 7898877764 589999999864

>d1pjxa_ b.68.6.1 (A:) Diisopropylfluorophosphatase (phosphotriesterase, DFP) {Squid (Loligo vulgaris) [TaxId: 6622]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Diisopropylfluorophosphatase (phosphotriesterase, DFP)
species: Squid (Loligo vulgaris) [TaxId: 6622]

Probab=99.02  E-value=2.3e-07  Score=69.42  Aligned_cols=132  Identities=8%  Similarity=0.064  Sum_probs=85.4

Q ss_pred             eEEEEEeCCCCEEEeecC---------------CCeEEEEECCCCeeeeeeecCCCCeeeEEEccCCC-----EEEEEeC
Q 042146          103 VFCINFNPQSNRIVSDTF---------------NETIRIWDIKTGKCLKVLPAHSDPVTAIDFNRDGT-----MIVTSSY  162 (262)
Q Consensus       103 v~~~~~~~~~~~l~~~~~---------------dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~-----~l~~~~~  162 (262)
                      .+.+++.|+|++.++-..               .|.|..++.. ++..... ..-..-+.++|+|+++     ++++-+.
T Consensus       119 pndl~~d~~G~lyvtd~~~~~~~~~~~~~~~~~~G~v~~~~~d-g~~~~~~-~~~~~pNGi~~~~d~d~~~~~lyv~d~~  196 (314)
T d1pjxa_         119 CNDCAFDYEGNLWITAPAGEVAPADYTRSMQEKFGSIYCFTTD-GQMIQVD-TAFQFPNGIAVRHMNDGRPYQLIVAETP  196 (314)
T ss_dssp             CCEEEECTTSCEEEEECBCBCTTSCCCBTTSSSCEEEEEECTT-SCEEEEE-EEESSEEEEEEEECTTSCEEEEEEEETT
T ss_pred             CcEEEECCCCCEEEecCccCcccccccceeccCCceEEEEeec-CceeEee-CCcceeeeeEECCCCCcceeEEEEEeec
Confidence            567888998887776321               3455555543 3333222 2223346789988764     4444567


Q ss_pred             CCeEEEEeCCC---------------------------CCccEEEEEcCCCeEEEEecCCCceeeEEeccCCceeEEEEE
Q 042146          163 DGLYRILDAST---------------------------PNGKFILVGTLDNTLRLWNYSTRKILKTYSGYTNSKYCISST  215 (262)
Q Consensus       163 dg~i~~~d~~~---------------------------~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~  215 (262)
                      .+.|..||+..                           .+|++.++....+.|.+||.+.++.+..+..           
T Consensus       197 ~~~i~~~d~~~~g~~~~~~~~~~~~~~~~~~pdGiavD~~GnlyVa~~~~g~I~~~dp~~g~~~~~i~~-----------  265 (314)
T d1pjxa_         197 TKKLWSYDIKGPAKIENKKVWGHIPGTHEGGADGMDFDEDNNLLVANWGSSHIEVFGPDGGQPKMRIRC-----------  265 (314)
T ss_dssp             TTEEEEEEEEETTEEEEEEEEEECCCCSSCEEEEEEEBTTCCEEEEEETTTEEEEECTTCBSCSEEEEC-----------
T ss_pred             ccceEEeeccCccccceeeEEEEccccccccceeeEEecCCcEEEEEcCCCEEEEEeCCCCEEEEEEEC-----------
Confidence            78888887543                           4566666666678888888887776666654           


Q ss_pred             EecCCCeeEEccccceEEEEEcCCCCeE-EEeeecCCCcEEEEeec
Q 042146          216 FSVTNGKYIVSHRDPVISVASHPAKNII-ASGALDNDRTMKIWTQE  260 (262)
Q Consensus       216 ~~~~~~~~~~~~~~~v~~~~~~p~~~~l-~~~~~d~d~~i~iw~~~  260 (262)
                                 ....+++++|.|+++.| +|.+  .+|.|.-.++.
T Consensus       266 -----------p~~~~t~~afg~d~~~lyVt~~--~~g~i~~~~~~  298 (314)
T d1pjxa_         266 -----------PFEKPSNLHFKPQTKTIFVTEH--ENNAVWKFEWQ  298 (314)
T ss_dssp             -----------SSSCEEEEEECTTSSEEEEEET--TTTEEEEEECS
T ss_pred             -----------CCCCEEEEEEeCCCCEEEEEEC--CCCcEEEEECC
Confidence                       44568899999998744 5555  57877776654

>d2p4oa1 b.68.6.3 (A:4-305) Hypothetical protein All0351 homologue {Nostoc punctiforme [TaxId: 272131]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: All0351-like
domain: Hypothetical protein All0351 homologue
species: Nostoc punctiforme [TaxId: 272131]

Probab=98.97  E-value=1e-06  Score=65.48  Aligned_cols=188  Identities=14%  Similarity=0.058  Sum_probs=118.8

Q ss_pred             CCceeeecccccceecccCcCceEEEEEccCCCeEEEecCCCeEEEeecCCCCCCCCCCCCCCccccCCccccccceeEE
Q 042146            4 DRSLESFRPYTLTQTLNGHLRAVSYVKFSHDGRLLTSSSAEKTLLTYSLSSISNFDSTPPSPLQKFTGHEQGISDLATIR   83 (262)
Q Consensus         4 d~~i~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~i~   83 (262)
                      +++|+.+.+......+......+.+++|+++|+++++...++.+..++....                            
T Consensus        48 ~~~I~~i~p~g~~~~~~~~~~~~~gla~~~dG~l~v~~~~~~~~~~~~~~~~----------------------------   99 (302)
T d2p4oa1          48 VGEIVSITPDGNQQIHATVEGKVSGLAFTSNGDLVATGWNADSIPVVSLVKS----------------------------   99 (302)
T ss_dssp             TTEEEEECTTCCEEEEEECSSEEEEEEECTTSCEEEEEECTTSCEEEEEECT----------------------------
T ss_pred             CCEEEEEeCCCCEEEEEcCCCCcceEEEcCCCCeEEEecCCceEEEEEeccc----------------------------
Confidence            4556666655555556667788999999999999888877787777754321                            


Q ss_pred             EEecCCCcc--ceecccCCcceEEEEEeCCCCEEEeecCCCeEEEEECCCCeeeeeeec--------C--CCCeeeEEEc
Q 042146           84 LWDVPTATS--LKTLIGHTNYVFCINFNPQSNRIVSDTFNETIRIWDIKTGKCLKVLPA--------H--SDPVTAIDFN  151 (262)
Q Consensus        84 v~d~~~~~~--~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~--------~--~~~v~~~~~~  151 (262)
                           .+..  +... ......+.+++.++++++++.+.++.+..+|...+........        +  ......+.+.
T Consensus       100 -----~~~~~~~~~~-~~~~~~n~i~~~~~g~~~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ngi~~~  173 (302)
T d2p4oa1         100 -----DGTVETLLTL-PDAIFLNGITPLSDTQYLTADSYRGAIWLIDVVQPSGSIWLEHPMLARSNSESVFPAANGLKRF  173 (302)
T ss_dssp             -----TSCEEEEEEC-TTCSCEEEEEESSSSEEEEEETTTTEEEEEETTTTEEEEEEECGGGSCSSTTCCSCSEEEEEEE
T ss_pred             -----ccceeecccc-CCccccceeEEccCCCEEeeccccccceeeeccCCcceeEecCCccceeeccCccccccccccc
Confidence                 1111  1111 1334578899999999999988899999999887653322211        1  1234556554


Q ss_pred             cCCCEEEEEeCCCeEEEEeCCC----------------------CCccEEEEEcCCCeEEEEecCCCceeeEEeccCCce
Q 042146          152 RDGTMIVTSSYDGLYRILDAST----------------------PNGKFILVGTLDNTLRLWNYSTRKILKTYSGYTNSK  209 (262)
Q Consensus       152 ~~~~~l~~~~~dg~i~~~d~~~----------------------~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~  209 (262)
                      . +.++++.+..+.|..++...                      ++++++++...++.|..++.. ++.........   
T Consensus       174 ~-~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~pdgia~d~dG~l~va~~~~~~V~~i~p~-G~~~~~~~~~~---  248 (302)
T d2p4oa1         174 G-NFLYVSNTEKMLLLRIPVDSTDKPGEPEIFVEQTNIDDFAFDVEGNLYGATHIYNSVVRIAPD-RSTTIIAQAEQ---  248 (302)
T ss_dssp             T-TEEEEEETTTTEEEEEEBCTTSCBCCCEEEEESCCCSSEEEBTTCCEEEECBTTCCEEEECTT-CCEEEEECGGG---
T ss_pred             C-CceeeecCCCCeEEeccccccccccccccccCCCCCcceEECCCCCEEEEEcCCCcEEEECCC-CCEEEEEecCC---
Confidence            3 34566667888888888655                      456666666666667776654 33222222110   


Q ss_pred             eEEEEEEecCCCeeEEccccceEEEEE---cCCCCeEEEee
Q 042146          210 YCISSTFSVTNGKYIVSHRDPVISVAS---HPAKNIIASGA  247 (262)
Q Consensus       210 ~~~~~~~~~~~~~~~~~~~~~v~~~~~---~p~~~~l~~~~  247 (262)
                                       .-...++++|   +||++.|+.++
T Consensus       249 -----------------~~~~pt~vafg~~~~D~~~Lyvtt  272 (302)
T d2p4oa1         249 -----------------GVIGSTAVAFGQTEGDCTAIYVVT  272 (302)
T ss_dssp             -----------------TCTTEEEEEECCSTTTTTEEEEEE
T ss_pred             -----------------CCCCceEEEEcCCCCCCCEEEEEC
Confidence                             2245789999   67888776654

>d2hqsa1 b.68.4.1 (A:163-431) TolB, C-terminal domain {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: TolB, C-terminal domain
family: TolB, C-terminal domain
domain: TolB, C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=98.94  E-value=1.1e-06  Score=63.85  Aligned_cols=195  Identities=11%  Similarity=0.126  Sum_probs=106.5

Q ss_pred             eeeec-ccccceecccCcCceEEEEEccCCCeEEEecCCC-eEEEeecCCCCCCCCCCCCCCccccCCccccccceeEEE
Q 042146            7 LESFR-PYTLTQTLNGHLRAVSYVKFSHDGRLLTSSSAEK-TLLTYSLSSISNFDSTPPSPLQKFTGHEQGISDLATIRL   84 (262)
Q Consensus         7 i~~~~-~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~-~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~i~v   84 (262)
                      |+..+ ...-.+.+..+...+..-+|||||+.||-..... .-.                                 +.+
T Consensus        21 l~i~d~dG~~~~~l~~~~~~~~sP~wSPDGk~IAf~~~~~~~~~---------------------------------~~~   67 (269)
T d2hqsa1          21 LRVSDYDGYNQFVVHRSPQPLMSPAWSPDGSKLAYVTFESGRSA---------------------------------LVI   67 (269)
T ss_dssp             EEEEETTSCSCEEEEEESSCEEEEEECTTSSEEEEEECTTSSCE---------------------------------EEE
T ss_pred             EEEEcCCCCCcEEEecCCCceeeeEECCCCCEEEEEEeeccCcc---------------------------------eee
Confidence            44432 2333344445677788999999999998764332 111                                 233


Q ss_pred             EecCCCccceecccCCcceEEEEEeCCCCEEEeecC-CCe--EEEEECCCCeeeeeeecCCCCeeeEEEccCCCEEE-EE
Q 042146           85 WDVPTATSLKTLIGHTNYVFCINFNPQSNRIVSDTF-NET--IRIWDIKTGKCLKVLPAHSDPVTAIDFNRDGTMIV-TS  160 (262)
Q Consensus        85 ~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-dg~--i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~-~~  160 (262)
                      .+...+.. ..+..+........|+|+++.++.... ++.  +..+........... ..........+++++..++ +.
T Consensus        68 ~~~~~~~~-~~~~~~~~~~~~~~~spdg~~i~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~  145 (269)
T d2hqsa1          68 QTLANGAV-RQVASFPRHNGAPAFSPDGSKLAFALSKTGSLNLYVMDLASGQIRQVT-DGRSNNTEPTWFPDSQNLAFTS  145 (269)
T ss_dssp             EETTTCCE-EEEECCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCEEECC-CCSSCEEEEEECTTSSEEEEEE
T ss_pred             eecccCce-eEEeeeecccccceecCCCCeeeEeeecCCccceeecccccccceeee-eccccccccccccccccceecc
Confidence            34443333 344456677888999999998876443 222  333333333332222 2344445556777666444 44


Q ss_pred             eCCCe--EEEEeCCC-------------------CCccEEEEEcCCC---eEEEEecCCCceeeEEeccCCceeEEEEEE
Q 042146          161 SYDGL--YRILDAST-------------------PNGKFILVGTLDN---TLRLWNYSTRKILKTYSGYTNSKYCISSTF  216 (262)
Q Consensus       161 ~~dg~--i~~~d~~~-------------------~~~~~l~~~~~dg---~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~  216 (262)
                      ..++.  |.+.++..                   ++++.++..+.++   .+.+.+...+.. ..+.             
T Consensus       146 ~~~g~~~i~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~~~~~~~~~~~~~i~~~~~~~~~~-~~~~-------------  211 (269)
T d2hqsa1         146 DQAGRPQVYKVNINGGAPQRITWEGSQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATGGV-QVLS-------------  211 (269)
T ss_dssp             CTTSSCEEEEEETTSSCCEECCCSSSEEEEEEECTTSSEEEEEEECSSCEEEEEEETTTCCE-EECC-------------
T ss_pred             cccCCceEeeeecccccceeeecccccccccccccccceeEEEeecCCceeeeEeecccccc-eEee-------------
Confidence            44554  44444443                   5666666554332   333344433322 1111             


Q ss_pred             ecCCCeeEEccccceEEEEEcCCCCeEEEeeec-CCCcEEEEeec
Q 042146          217 SVTNGKYIVSHRDPVISVASHPAKNIIASGALD-NDRTMKIWTQE  260 (262)
Q Consensus       217 ~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~d-~d~~i~iw~~~  260 (262)
                                +........|+|||+.|+..+.. ....|.+++++
T Consensus       212 ----------~~~~~~~p~~SPDG~~i~f~s~~~~~~~l~~~~~d  246 (269)
T d2hqsa1         212 ----------STFLDETPSLAPNGTMVIYSSSQGMGSVLNLVSTD  246 (269)
T ss_dssp             ----------CSSSCEEEEECTTSSEEEEEEEETTEEEEEEEETT
T ss_pred             ----------cCccccceEECCCCCEEEEEEcCCCCcEEEEEECC
Confidence                      44456678899999988765521 23456777765

>d2dg1a1 b.68.6.1 (A:6-324) Lactonase Drp35 {Staphylococcus aureus [TaxId: 1280]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Lactonase Drp35
species: Staphylococcus aureus [TaxId: 1280]

Probab=98.78  E-value=3.8e-06  Score=62.81  Aligned_cols=129  Identities=6%  Similarity=-0.016  Sum_probs=85.4

Q ss_pred             cceEEEEEeCCCCEEEeecC------CCeEEEEECCCCeeeeeeecCCCCeeeEEEccCCCEEEEE-eCCCeEEEEeCCC
Q 042146          101 NYVFCINFNPQSNRIVSDTF------NETIRIWDIKTGKCLKVLPAHSDPVTAIDFNRDGTMIVTS-SYDGLYRILDAST  173 (262)
Q Consensus       101 ~~v~~~~~~~~~~~l~~~~~------dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~~dg~i~~~d~~~  173 (262)
                      ...+.+++.|+|++.++...      .+.+..++..... +..+...-...+.++|+|+++.|+.+ +..+.|..|++..
T Consensus       130 ~~~nd~~~d~~G~l~vtd~~~~~~~~~g~v~~~~~dg~~-~~~~~~~~~~pnGia~s~dg~~lyvad~~~~~I~~~d~~~  208 (319)
T d2dg1a1         130 YCIDDMVFDSKGGFYFTDFRGYSTNPLGGVYYVSPDFRT-VTPIIQNISVANGIALSTDEKVLWVTETTANRLHRIALED  208 (319)
T ss_dssp             CCEEEEEECTTSCEEEEECCCBTTBCCEEEEEECTTSCC-EEEEEEEESSEEEEEECTTSSEEEEEEGGGTEEEEEEECT
T ss_pred             cCCcceeEEeccceeecccccccccCcceeEEEecccce-eEEEeeccceeeeeeeccccceEEEecccCCceEEEEEcC
Confidence            34778999999987776432      2346666654333 33332223345789999999866544 5778999998653


Q ss_pred             ----------------------------CCccEEEEEcCCCeEEEEecCCCceeeEEeccCCceeEEEEEEecCCCeeEE
Q 042146          174 ----------------------------PNGKFILVGTLDNTLRLWNYSTRKILKTYSGYTNSKYCISSTFSVTNGKYIV  225 (262)
Q Consensus       174 ----------------------------~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  225 (262)
                                                  .+|++.++....+.|.+||. .|+.+..+.......                
T Consensus       209 ~g~~~~~~~~~~~~~~~~~~~PdGl~vD~~G~l~Va~~~~g~V~~~~p-~G~~l~~i~~P~~~~----------------  271 (319)
T d2dg1a1         209 DGVTIQPFGATIPYYFTGHEGPDSCCIDSDDNLYVAMYGQGRVLVFNK-RGYPIGQILIPGRDE----------------  271 (319)
T ss_dssp             TSSSEEEEEEEEEEECCSSSEEEEEEEBTTCCEEEEEETTTEEEEECT-TSCEEEEEECTTGGG----------------
T ss_pred             CCceeccccceeeeccCCccceeeeeEcCCCCEEEEEcCCCEEEEECC-CCcEEEEEeCCCcCC----------------
Confidence                                        46677777777889999995 688887776422100                


Q ss_pred             ccccceEEEEEcCCCCeEEEee
Q 042146          226 SHRDPVISVASHPAKNIIASGA  247 (262)
Q Consensus       226 ~~~~~v~~~~~~p~~~~l~~~~  247 (262)
                      ++...+++++|.|.+..+++..
T Consensus       272 ~~~~~~~~~~~~~~~~~~~~t~  293 (319)
T d2dg1a1         272 GHMLRSTHPQFIPGTNQLIICS  293 (319)
T ss_dssp             TCSCBCCEEEECTTSCEEEEEE
T ss_pred             CcCceeeeEEEeCCCCEEEEEc
Confidence            0344578999999887776654

>d1rwia_ b.68.9.1 (A:) Serine/threonine-protein kinase PknD {Mycobacterium tuberculosis [TaxId: 1773]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: NHL repeat
family: NHL repeat
domain: Serine/threonine-protein kinase PknD
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=98.72  E-value=2.3e-06  Score=62.07  Aligned_cols=133  Identities=10%  Similarity=0.043  Sum_probs=86.1

Q ss_pred             ceEEEEEeCCCCEEEeecCCCeEEEEECCCCeeeeeeecCCCCeeeEEEccCCCEEEEEeCCCeEEEEeCCC--------
Q 042146          102 YVFCINFNPQSNRIVSDTFNETIRIWDIKTGKCLKVLPAHSDPVTAIDFNRDGTMIVTSSYDGLYRILDAST--------  173 (262)
Q Consensus       102 ~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~d~~~--------  173 (262)
                      ....++++++++++++....+.+++++..+...+.... ......++++.++++++++-..+..+..++...        
T Consensus        58 ~p~gvav~~~g~i~v~d~~~~~i~~~~~~~~~~~~~~~-~~~~p~~iavd~~g~i~v~d~~~~~~~~~~~~~~~~~~~~~  136 (260)
T d1rwia_          58 QPQGLAVDGAGTVYVTDFNNRVVTLAAGSNNQTVLPFD-GLNYPEGLAVDTQGAVYVADRGNNRVVKLAAGSKTQTVLPF  136 (260)
T ss_dssp             SCCCEEECTTCCEEEEETTTEEEEECTTCSCCEECCCC-SCCSEEEEEECTTCCEEEEEGGGTEEEEECTTCSSCEECCC
T ss_pred             CceEEEEcCCCCEEEeeeeeceeeeeeeccceeeeeee-eeeecccccccccceeEeeccccccccccccccceeeeeee
Confidence            35678999999988888777777777655555443333 234578999999999888777777787777544        


Q ss_pred             ------------CCccEEEEEcCCCeEEEEecCCCceeeEEeccCCceeEEEEEEecCCCeeEEccccceEEEEEcCCCC
Q 042146          174 ------------PNGKFILVGTLDNTLRLWNYSTRKILKTYSGYTNSKYCISSTFSVTNGKYIVSHRDPVISVASHPAKN  241 (262)
Q Consensus       174 ------------~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~  241 (262)
                                  ++++.+++...++.|..++............                      .-.....+++++++.
T Consensus       137 ~~~~~p~~i~~~~~g~~~v~~~~~~~i~~~d~~~~~~~~~~~~----------------------~~~~p~gi~~d~~g~  194 (260)
T d1rwia_         137 TGLNDPDGVAVDNSGNVYVTDTDNNRVVKLEAESNNQVVLPFT----------------------DITAPWGIAVDEAGT  194 (260)
T ss_dssp             CSCCSCCEEEECTTCCEEEEEGGGTEEEEECTTTCCEEECCCS----------------------SCCSEEEEEECTTCC
T ss_pred             cccCCcceeeecCCCCEeeeccccccccccccccceeeeeecc----------------------ccCCCccceeeeeee
Confidence                        4556666666667777777654332221111                      223456677777777


Q ss_pred             eEEEeeecCCCcEEEEee
Q 042146          242 IIASGALDNDRTMKIWTQ  259 (262)
Q Consensus       242 ~l~~~~~d~d~~i~iw~~  259 (262)
                      ++++..  ..+.|..++.
T Consensus       195 l~vsd~--~~~~i~~~~~  210 (260)
T d1rwia_         195 VYVTEH--NTNQVVKLLA  210 (260)
T ss_dssp             EEEEET--TTTEEEEECT
T ss_pred             eeeeec--CCCEEEEEeC
Confidence            666655  5566655544

>d2ghsa1 b.68.6.1 (A:20-314) Regucalcin {Agrobacterium tumefaciens [TaxId: 358]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Regucalcin
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=98.69  E-value=2e-05  Score=58.07  Aligned_cols=121  Identities=12%  Similarity=0.073  Sum_probs=80.1

Q ss_pred             cceEEEEEeCCCCEEEeecC----CCeEEEEECCCCeeeeeeecCCCCeeeEEEccCCCEEEE-EeCCCeEEEEeCCC--
Q 042146          101 NYVFCINFNPQSNRIVSDTF----NETIRIWDIKTGKCLKVLPAHSDPVTAIDFNRDGTMIVT-SSYDGLYRILDAST--  173 (262)
Q Consensus       101 ~~v~~~~~~~~~~~l~~~~~----dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~-~~~dg~i~~~d~~~--  173 (262)
                      ..++.+.+.|+|++.++...    .+.-.+|.+..++....... -..-+.++|+++++.++. -+..+.|..|++..  
T Consensus       103 ~~~nd~~vd~~G~iw~~~~~~~~~~~~g~l~~~~~g~~~~~~~~-~~~~Ng~~~s~d~~~l~~~dt~~~~I~~~~~d~~~  181 (295)
T d2ghsa1         103 NRSNDGRMHPSGALWIGTMGRKAETGAGSIYHVAKGKVTKLFAD-ISIPNSICFSPDGTTGYFVDTKVNRLMRVPLDART  181 (295)
T ss_dssp             EEEEEEEECTTSCEEEEEEETTCCTTCEEEEEEETTEEEEEEEE-ESSEEEEEECTTSCEEEEEETTTCEEEEEEBCTTT
T ss_pred             ccceeeEECCCCCEEEEeccccccccceeEeeecCCcEEEEeec-cCCcceeeecCCCceEEEeecccceeeEeeecccc
Confidence            35788999999997776432    23445666666765444433 334578999999986554 45678888887642  


Q ss_pred             --------------------------CCccEEEEEcCCCeEEEEecCCCceeeEEeccCCceeEEEEEEecCCCeeEEcc
Q 042146          174 --------------------------PNGKFILVGTLDNTLRLWNYSTRKILKTYSGYTNSKYCISSTFSVTNGKYIVSH  227 (262)
Q Consensus       174 --------------------------~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  227 (262)
                                                .+|++.++.-..+.|..||. .|+.+..+.-                      .
T Consensus       182 ~~~~~~~~~~~~~~~~~g~pdG~~vD~~GnlWva~~~~g~V~~~dp-~G~~~~~i~l----------------------P  238 (295)
T d2ghsa1         182 GLPTGKAEVFIDSTGIKGGMDGSVCDAEGHIWNARWGEGAVDRYDT-DGNHIARYEV----------------------P  238 (295)
T ss_dssp             CCBSSCCEEEEECTTSSSEEEEEEECTTSCEEEEEETTTEEEEECT-TCCEEEEEEC----------------------S
T ss_pred             cccccceEEEeccCcccccccceEEcCCCCEEeeeeCCCceEEecC-CCcEeeEecC----------------------C
Confidence                                      45555555556677888884 5777777764                      3


Q ss_pred             ccceEEEEEc-CCCCeEEE
Q 042146          228 RDPVISVASH-PAKNIIAS  245 (262)
Q Consensus       228 ~~~v~~~~~~-p~~~~l~~  245 (262)
                      ...+++++|- |+.+.|+.
T Consensus       239 ~~~~T~~~FGG~d~~~Lyv  257 (295)
T d2ghsa1         239 GKQTTCPAFIGPDASRLLV  257 (295)
T ss_dssp             CSBEEEEEEESTTSCEEEE
T ss_pred             CCceEEEEEeCCCCCEEEE
Confidence            3468899995 66555543

>d1jofa_ b.69.10.1 (A:) 3-carboxy-cis,cis-mucoante lactonizing enzyme {Neurospora crassa [TaxId: 5141]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: 3-carboxy-cis,cis-mucoante lactonizing enzyme
family: 3-carboxy-cis,cis-mucoante lactonizing enzyme
domain: 3-carboxy-cis,cis-mucoante lactonizing enzyme
species: Neurospora crassa [TaxId: 5141]

Probab=98.68  E-value=5.6e-06  Score=63.10  Aligned_cols=138  Identities=12%  Similarity=0.165  Sum_probs=87.5

Q ss_pred             ceEEEEEccCCCeEEEecC-CCeEEEeecCCCCCCCCCCCCCCccccCCccccccceeEEEEecCCCcc--ce--ecccC
Q 042146           25 AVSYVKFSHDGRLLTSSSA-EKTLLTYSLSSISNFDSTPPSPLQKFTGHEQGISDLATIRLWDVPTATS--LK--TLIGH   99 (262)
Q Consensus        25 ~v~~~~~~~~~~~l~s~~~-d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~i~v~d~~~~~~--~~--~~~~~   99 (262)
                      .+.++.|+|+|+++++++. ...|.+|+...                                  .+..  ..  .....
T Consensus       146 h~h~v~~sPdG~~l~v~d~g~d~v~~~~~~~----------------------------------~g~~~~~~~~~~~~~  191 (365)
T d1jofa_         146 GIHGMVFDPTETYLYSADLTANKLWTHRKLA----------------------------------SGEVELVGSVDAPDP  191 (365)
T ss_dssp             CEEEEEECTTSSEEEEEETTTTEEEEEEECT----------------------------------TSCEEEEEEEECSST
T ss_pred             cceEEEECCCCCEEEEeeCCCCEEEEEEccC----------------------------------CCceeeccceeecCC
Confidence            3679999999998887753 34666665432                                  1111  01  11123


Q ss_pred             CcceEEEEEeCCCCEEEe-ecCCCeEEEEECCCCeeee--e---ee--------------cCCCCeeeEEEccCCCEEEE
Q 042146          100 TNYVFCINFNPQSNRIVS-DTFNETIRIWDIKTGKCLK--V---LP--------------AHSDPVTAIDFNRDGTMIVT  159 (262)
Q Consensus       100 ~~~v~~~~~~~~~~~l~~-~~~dg~i~vwd~~~~~~~~--~---~~--------------~~~~~v~~~~~~~~~~~l~~  159 (262)
                      ......++|+|+++++++ .-.+++|.+|++..++...  .   ..              .+......+.++|+|++|++
T Consensus       192 g~gPr~i~f~pdg~~~yv~~e~~~~V~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~spdG~~lyv  271 (365)
T d1jofa_         192 GDHPRWVAMHPTGNYLYALMEAGNRICEYVIDPATHMPVYTHHSFPLIPPGIPDRDPETGKGLYRADVCALTFSGKYMFA  271 (365)
T ss_dssp             TCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEEESSCTTCCCBCTTTSSBSEEEEEEEECTTSSEEEE
T ss_pred             CCceEEEEECCCCceEEEeccCCCEEEEEEecCCCceEEEEeeeeccccccccccccccccccCCccceEECCCCCEEEE
Confidence            456788999999998855 4467899999986553221  1   10              11123567899999999887


Q ss_pred             EeC------CCeEEEEeCCC--------------------------C-CccEEEEE-cCCCeEEEEecCCC
Q 042146          160 SSY------DGLYRILDAST--------------------------P-NGKFILVG-TLDNTLRLWNYSTR  196 (262)
Q Consensus       160 ~~~------dg~i~~~d~~~--------------------------~-~~~~l~~~-~~dg~i~i~d~~~~  196 (262)
                      +..      .+.|..|++..                          | ++++|+++ ..++.|.+|++...
T Consensus       272 snr~~~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~G~~p~~i~~~p~~G~~l~va~~~s~~v~v~~~~~~  342 (365)
T d1jofa_         272 SSRANKFELQGYIAGFKLRDCGSIEKQLFLSPTPTSGGHSNAVSPCPWSDEWMAITDDQEGWLEIYRWKDE  342 (365)
T ss_dssp             EEEESSTTSCCEEEEEEECTTSCEEEEEEEEECSSCCTTCCCEEECTTCTTEEEEECSSSCEEEEEEEETT
T ss_pred             EcccCCCccceEEEEEEecCCCceeeEeEeeEEEcCCCCccEEEecCCCCCEEEEEeCCCCeEEEEEEeCC
Confidence            742      22366665432                          3 67877666 46689999987644

>d2dg1a1 b.68.6.1 (A:6-324) Lactonase Drp35 {Staphylococcus aureus [TaxId: 1280]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Lactonase Drp35
species: Staphylococcus aureus [TaxId: 1280]

Probab=98.66  E-value=2.7e-05  Score=58.02  Aligned_cols=186  Identities=10%  Similarity=0.103  Sum_probs=106.5

Q ss_pred             cCceEEEEEccCCCeEEEecCCCeEEEeecCCCCCCCCCCCCCCccccCCccccccceeEEEEecCCCccceecccCCcc
Q 042146           23 LRAVSYVKFSHDGRLLTSSSAEKTLLTYSLSSISNFDSTPPSPLQKFTGHEQGISDLATIRLWDVPTATSLKTLIGHTNY  102 (262)
Q Consensus        23 ~~~v~~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~i~v~d~~~~~~~~~~~~~~~~  102 (262)
                      ...+..++|.++|+++++-...+.|..|+.+                                   .++...........
T Consensus        39 ~~~lEG~~~D~~G~Ly~~D~~~g~I~ri~p~-----------------------------------g~~~~~~~~~~~~~   83 (319)
T d2dg1a1          39 GLQLEGLNFDRQGQLFLLDVFEGNIFKINPE-----------------------------------TKEIKRPFVSHKAN   83 (319)
T ss_dssp             CCCEEEEEECTTSCEEEEETTTCEEEEECTT-----------------------------------TCCEEEEEECSSSS
T ss_pred             CcCcEeCEECCCCCEEEEECCCCEEEEEECC-----------------------------------CCeEEEEEeCCCCC
Confidence            3445788999999977777777877766443                                   22222222233445


Q ss_pred             eEEEEEeCCCCEEEeecC----CCeEEEEECCCCeeeeeeec--CCCCeeeEEEccCCCEEEEEeC------CCeEEEEe
Q 042146          103 VFCINFNPQSNRIVSDTF----NETIRIWDIKTGKCLKVLPA--HSDPVTAIDFNRDGTMIVTSSY------DGLYRILD  170 (262)
Q Consensus       103 v~~~~~~~~~~~l~~~~~----dg~i~vwd~~~~~~~~~~~~--~~~~v~~~~~~~~~~~l~~~~~------dg~i~~~d  170 (262)
                      ...++++++|+++++...    .+.+...+............  .......+++.++|++.++...      .+.+..++
T Consensus        84 p~gla~~~dG~l~va~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~nd~~~d~~G~l~vtd~~~~~~~~~g~v~~~~  163 (319)
T d2dg1a1          84 PAAIKIHKDGRLFVCYLGDFKSTGGIFAATENGDNLQDIIEDLSTAYCIDDMVFDSKGGFYFTDFRGYSTNPLGGVYYVS  163 (319)
T ss_dssp             EEEEEECTTSCEEEEECTTSSSCCEEEEECTTSCSCEEEECSSSSCCCEEEEEECTTSCEEEEECCCBTTBCCEEEEEEC
T ss_pred             eeEEEECCCCCEEEEecCCCccceeEEEEcCCCceeeeeccCCCcccCCcceeEEeccceeecccccccccCcceeEEEe
Confidence            788999999998876543    33456666555544333321  1235788999999986665322      12344443


Q ss_pred             CCC-------------------CCccEE-EEEcCCCeEEEEecCC-CceeeEEeccCCceeEEEEEEecCCCeeEEcccc
Q 042146          171 AST-------------------PNGKFI-LVGTLDNTLRLWNYST-RKILKTYSGYTNSKYCISSTFSVTNGKYIVSHRD  229 (262)
Q Consensus       171 ~~~-------------------~~~~~l-~~~~~dg~i~i~d~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  229 (262)
                      ...                   ++++.| ++-+..+.|+.|++.. +.........        ....       .....
T Consensus       164 ~dg~~~~~~~~~~~~pnGia~s~dg~~lyvad~~~~~I~~~d~~~~g~~~~~~~~~--------~~~~-------~~~~~  228 (319)
T d2dg1a1         164 PDFRTVTPIIQNISVANGIALSTDEKVLWVTETTANRLHRIALEDDGVTIQPFGAT--------IPYY-------FTGHE  228 (319)
T ss_dssp             TTSCCEEEEEEEESSEEEEEECTTSSEEEEEEGGGTEEEEEEECTTSSSEEEEEEE--------EEEE-------CCSSS
T ss_pred             cccceeEEEeeccceeeeeeeccccceEEEecccCCceEEEEEcCCCceeccccce--------eeec-------cCCcc
Confidence            322                   566544 4445667777777653 2221111100        0000       00112


Q ss_pred             ceEEEEEcCCCCeEEEeeecCCCcEEEEeec
Q 042146          230 PVISVASHPAKNIIASGALDNDRTMKIWTQE  260 (262)
Q Consensus       230 ~v~~~~~~p~~~~l~~~~~d~d~~i~iw~~~  260 (262)
                      ..-.+++.++|++.++..  .++.|.+++.+
T Consensus       229 ~PdGl~vD~~G~l~Va~~--~~g~V~~~~p~  257 (319)
T d2dg1a1         229 GPDSCCIDSDDNLYVAMY--GQGRVLVFNKR  257 (319)
T ss_dssp             EEEEEEEBTTCCEEEEEE--TTTEEEEECTT
T ss_pred             ceeeeeEcCCCCEEEEEc--CCCEEEEECCC
Confidence            345788888888777766  67888888754

>d1xfda1 b.70.3.1 (A:127-591) Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: DPP6 N-terminal domain-like
family: DPP6 N-terminal domain-like
domain: Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.64  E-value=1.3e-06  Score=69.02  Aligned_cols=143  Identities=13%  Similarity=0.096  Sum_probs=85.5

Q ss_pred             CCCCceeeecccc--cceeccc---CcCceEEEEEccCCCeEEEecCCCeEEEeecCCCCCCCCCCCCCCccccCCcccc
Q 042146            2 SSDRSLESFRPYT--LTQTLNG---HLRAVSYVKFSHDGRLLTSSSAEKTLLTYSLSSISNFDSTPPSPLQKFTGHEQGI   76 (262)
Q Consensus         2 s~d~~i~~~~~~~--~~~~~~~---h~~~v~~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v   76 (262)
                      ..||.+..++...  ....+..   ....+....||||+++++....-.  ++|...                       
T Consensus        34 ~~~g~i~~~~~~~~~~~~l~~~~~~~~~~~~~~~~SpD~~~vl~~~~~~--~~~r~s-----------------------   88 (465)
T d1xfda1          34 EQKGTVRLWNVETNTSTVLIEGKKIESLRAIRYEISPDREYALFSYNVE--PIYQHS-----------------------   88 (465)
T ss_dssp             CSSSCEEEBCGGGCCCEEEECTTTTTTTTCSEEEECTTSSEEEEEESCC--CCSSSC-----------------------
T ss_pred             eCCCcEEEEECCCCCEEEEEcCccccccccceeEECCCCCeEEEEEccc--ceeEee-----------------------
Confidence            3567777775322  1111221   234677888999999988765322  234211                       


Q ss_pred             ccceeEEEEecCCCcccee--cccCCcceEEEEEeCCCCEEEeecCCCeEEEEECCCCeeeeeeec-CCCC---------
Q 042146           77 SDLATIRLWDVPTATSLKT--LIGHTNYVFCINFNPQSNRIVSDTFNETIRIWDIKTGKCLKVLPA-HSDP---------  144 (262)
Q Consensus        77 ~~~~~i~v~d~~~~~~~~~--~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~-~~~~---------  144 (262)
                       ..+.+.++|+.++.....  .......+....|+|+|+.+|-.. ++.|.+.+...+..++.... ..+.         
T Consensus        89 -~~~~~~i~d~~~~~~~~l~~~~~~~~~l~~~~wSPDG~~iafv~-~~nl~~~~~~~~~~~~lt~~g~~~~i~nG~~d~v  166 (465)
T d1xfda1          89 -YTGYYVLSKIPHGDPQSLDPPEVSNAKLQYAGWGPKGQQLIFIF-ENNIYYCAHVGKQAIRVVSTGKEGVIYNGLSDWL  166 (465)
T ss_dssp             -CCSEEEEEESSSCCCEECCCTTCCSCCCSBCCBCSSTTCEEEEE-TTEEEEESSSSSCCEEEECCCBTTTEEEEECCHH
T ss_pred             -ccccEEEEEccCCceeeccCccCCccccceeeeccCCceEEEEe-cceEEEEecCCCceEEEecccCcceeeccccchh
Confidence             112467788877664332  222334566688999999998766 67888888876655443321 1111         


Q ss_pred             --------eeeEEEccCCCEEEEEeC-CCeEEEEeC
Q 042146          145 --------VTAIDFNRDGTMIVTSSY-DGLYRILDA  171 (262)
Q Consensus       145 --------v~~~~~~~~~~~l~~~~~-dg~i~~~d~  171 (262)
                              -.++.|||||++|+.... +..+..+.+
T Consensus       167 yeee~~~~~~a~~WSPDgk~iaf~~~D~s~V~~~~~  202 (465)
T d1xfda1         167 YEEEILKTHIAHWWSPDGTRLAYAAINDSRVPIMEL  202 (465)
T ss_dssp             HHHTTSSSSEEEEECTTSSEEEEEEEECTTSCEEEE
T ss_pred             hhhhhccccceEEECCCCCeEEEEEecccccceeec
Confidence                    246789999999988763 344555543

>d1pjxa_ b.68.6.1 (A:) Diisopropylfluorophosphatase (phosphotriesterase, DFP) {Squid (Loligo vulgaris) [TaxId: 6622]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Diisopropylfluorophosphatase (phosphotriesterase, DFP)
species: Squid (Loligo vulgaris) [TaxId: 6622]

Probab=98.61  E-value=3e-05  Score=57.67  Aligned_cols=59  Identities=7%  Similarity=0.048  Sum_probs=40.7

Q ss_pred             ceEEEEEeCCCCEEEeecCCCeEEEEECCCCeeeeeeecCCC----CeeeEEEccCCCEEEEE
Q 042146          102 YVFCINFNPQSNRIVSDTFNETIRIWDIKTGKCLKVLPAHSD----PVTAIDFNRDGTMIVTS  160 (262)
Q Consensus       102 ~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~----~v~~~~~~~~~~~l~~~  160 (262)
                      .-..+++.++++.++++.....|...+..............+    ..+.+++.++|++.++-
T Consensus        72 ~P~Gl~~~~dg~~l~vad~~~~i~~~~~~g~~~~~~~~~~~g~~~~~pndl~~d~~G~lyvtd  134 (314)
T d1pjxa_          72 IPAGCQCDRDANQLFVADMRLGLLVVQTDGTFEEIAKKDSEGRRMQGCNDCAFDYEGNLWITA  134 (314)
T ss_dssp             CEEEEEECSSSSEEEEEETTTEEEEEETTSCEEECCSBCTTSCBCBCCCEEEECTTSCEEEEE
T ss_pred             cceeEEEeCCCCEEEEEECCCeEEEEeCCCcEEEEEeccccccccCCCcEEEECCCCCEEEec
Confidence            356899999999888777677788899775543222111111    35789999999887764

>d2hqsa1 b.68.4.1 (A:163-431) TolB, C-terminal domain {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: TolB, C-terminal domain
family: TolB, C-terminal domain
domain: TolB, C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=98.50  E-value=3.9e-05  Score=55.33  Aligned_cols=79  Identities=14%  Similarity=0.206  Sum_probs=55.2

Q ss_pred             EEEEecCCCccceecccCCcceEEEEEeCCCCEEEeecCC---CeEEEEECCCCeeeeeeecCCCCeeeEEEccCCCEEE
Q 042146           82 IRLWDVPTATSLKTLIGHTNYVFCINFNPQSNRIVSDTFN---ETIRIWDIKTGKCLKVLPAHSDPVTAIDFNRDGTMIV  158 (262)
Q Consensus        82 i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d---g~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~  158 (262)
                      |.+.|.. |.....+..+...+..-+|+|||+.||.....   ..+.+.+...+... .+..+........|+|+|+.++
T Consensus        21 l~i~d~d-G~~~~~l~~~~~~~~sP~wSPDGk~IAf~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~spdg~~i~   98 (269)
T d2hqsa1          21 LRVSDYD-GYNQFVVHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVR-QVASFPRHNGAPAFSPDGSKLA   98 (269)
T ss_dssp             EEEEETT-SCSCEEEEEESSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCEE-EEECCSSCEEEEEECTTSSEEE
T ss_pred             EEEEcCC-CCCcEEEecCCCceeeeEECCCCCEEEEEEeeccCcceeeeecccCcee-EEeeeecccccceecCCCCeee
Confidence            5566654 44444444456778899999999999865433   35777777766543 4445677889999999999887


Q ss_pred             EEeC
Q 042146          159 TSSY  162 (262)
Q Consensus       159 ~~~~  162 (262)
                      ....
T Consensus        99 ~~~~  102 (269)
T d2hqsa1          99 FALS  102 (269)
T ss_dssp             EEEC
T ss_pred             Eeee
Confidence            7653

>d1q7fa_ b.68.9.1 (A:) Brain tumor cg10719-pa {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: NHL repeat
family: NHL repeat
domain: Brain tumor cg10719-pa
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=98.42  E-value=4.8e-05  Score=55.48  Aligned_cols=74  Identities=12%  Similarity=0.298  Sum_probs=55.8

Q ss_pred             cCCcceEEEEEeCCCCEEEeecCCCeEEEEECCCCeeeeeee--cCCCCeeeEEEccCCCEEEEEeC-CCeEEEEeCC
Q 042146           98 GHTNYVFCINFNPQSNRIVSDTFNETIRIWDIKTGKCLKVLP--AHSDPVTAIDFNRDGTMIVTSSY-DGLYRILDAS  172 (262)
Q Consensus        98 ~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~--~~~~~v~~~~~~~~~~~l~~~~~-dg~i~~~d~~  172 (262)
                      .+......+++.++++.+++....+.|.+||.. ++.+..+.  +.......|++.++|+++++-.. ++.|.+|+..
T Consensus       154 ~~~~~~~~i~~d~~g~i~v~d~~~~~V~~~d~~-G~~~~~~g~~g~~~~P~giavD~~G~i~Vad~~~~~~v~~f~~~  230 (279)
T d1q7fa_         154 KHLEFPNGVVVNDKQEIFISDNRAHCVKVFNYE-GQYLRQIGGEGITNYPIGVGINSNGEILIADNHNNFNLTIFTQD  230 (279)
T ss_dssp             TTCSSEEEEEECSSSEEEEEEGGGTEEEEEETT-CCEEEEESCTTTSCSEEEEEECTTCCEEEEECSSSCEEEEECTT
T ss_pred             ccccccceeeeccceeEEeeeccccceeeeecC-CceeeeecccccccCCcccccccCCeEEEEECCCCcEEEEECCC
Confidence            345667889999999998888889999999964 66666663  23445789999999997776543 4578888743

>d1k32a2 b.68.7.1 (A:39-319) Tricorn protease N-terminal domain {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Tricorn protease N-terminal domain
family: Tricorn protease N-terminal domain
domain: Tricorn protease N-terminal domain
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=98.39  E-value=3.7e-05  Score=55.70  Aligned_cols=77  Identities=12%  Similarity=0.266  Sum_probs=49.6

Q ss_pred             EEecCCCccceecccCCcceEEEEEeCCCCEEEeec----CC--CeEEEEECCCCeeeeeeec------CCCCeeeEEEc
Q 042146           84 LWDVPTATSLKTLIGHTNYVFCINFNPQSNRIVSDT----FN--ETIRIWDIKTGKCLKVLPA------HSDPVTAIDFN  151 (262)
Q Consensus        84 v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~----~d--g~i~vwd~~~~~~~~~~~~------~~~~v~~~~~~  151 (262)
                      +.|+..++. ..+..+.+.+...+|+|||+.|+...    .+  ..|.+++..+++.......      .........|+
T Consensus        25 ~~d~~~g~~-~~Lt~~~~~~~~p~~SPDG~~iaf~~~~~~~~~~~~i~~~~~~~g~~~~lt~~~~~~~~~~~~~~~~~~s  103 (281)
T d1k32a2          25 EHDLKSGST-RKIVSNLGVINNARFFPDGRKIAIRVMRGSSLNTADLYFYNGENGEIKRITYFSGKSTGRRMFTDVAGFD  103 (281)
T ss_dssp             EEETTTCCE-EEEECSSSEEEEEEECTTSSEEEEEEEESTTCCEEEEEEEETTTTEEEECCCCCEEEETTEECSEEEEEC
T ss_pred             EEECCCCCE-EEEecCCCcccCEEECCCCCEEEEEEeeCCCCCceEEEEEEecCCceEEeeecCCCccCccccccccccC
Confidence            445555543 34555667788999999999987543    22  2478888877765433211      12245678899


Q ss_pred             cCCCEEEEEe
Q 042146          152 RDGTMIVTSS  161 (262)
Q Consensus       152 ~~~~~l~~~~  161 (262)
                      |+|+.++...
T Consensus       104 pdg~~l~~~~  113 (281)
T d1k32a2         104 PDGNLIISTD  113 (281)
T ss_dssp             TTCCEEEEEC
T ss_pred             CCCCEEEEEE
Confidence            9999887653

>d1xfda1 b.70.3.1 (A:127-591) Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: DPP6 N-terminal domain-like
family: DPP6 N-terminal domain-like
domain: Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.16  E-value=2.2e-05  Score=61.77  Aligned_cols=145  Identities=16%  Similarity=0.226  Sum_probs=91.6

Q ss_pred             EEeCCCCEEEeecCCCeEEEEECCCCeeeeeeecC---CCCeeeEEEccCCCEEEEEe---------CCCeEEEEeCCC-
Q 042146          107 NFNPQSNRIVSDTFNETIRIWDIKTGKCLKVLPAH---SDPVTAIDFNRDGTMIVTSS---------YDGLYRILDAST-  173 (262)
Q Consensus       107 ~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~---~~~v~~~~~~~~~~~l~~~~---------~dg~i~~~d~~~-  173 (262)
                      .|.+++.++.. ..+|.|.+||+.+++....+...   ...+....||||+++++...         ..+.+.++|+.. 
T Consensus        23 ~W~~~~~~~~~-~~~g~i~~~~~~~~~~~~l~~~~~~~~~~~~~~~~SpD~~~vl~~~~~~~~~r~s~~~~~~i~d~~~~  101 (465)
T d1xfda1          23 KWISDTEFIYR-EQKGTVRLWNVETNTSTVLIEGKKIESLRAIRYEISPDREYALFSYNVEPIYQHSYTGYYVLSKIPHG  101 (465)
T ss_dssp             CBSSSSCBCCC-CSSSCEEEBCGGGCCCEEEECTTTTTTTTCSEEEECTTSSEEEEEESCCCCSSSCCCSEEEEEESSSC
T ss_pred             EEeCCCcEEEE-eCCCcEEEEECCCCCEEEEEcCccccccccceeEECCCCCeEEEEEcccceeEeeccccEEEEEccCC
Confidence            57777776654 45788999999888654333322   23677888999999877764         356788889765 


Q ss_pred             ---------------------CCccEEEEEcCCCeEEEEecCCCceeeEEeccCCc-eeEEEEEEecCCCeeEEccccce
Q 042146          174 ---------------------PNGKFILVGTLDNTLRLWNYSTRKILKTYSGYTNS-KYCISSTFSVTNGKYIVSHRDPV  231 (262)
Q Consensus       174 ---------------------~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~v  231 (262)
                                           |+|+.++-.. ++.|++.+...+..++........ +..-...+-....     -.+.-
T Consensus       102 ~~~~l~~~~~~~~~l~~~~wSPDG~~iafv~-~~nl~~~~~~~~~~~~lt~~g~~~~i~nG~~d~vyeee-----~~~~~  175 (465)
T d1xfda1         102 DPQSLDPPEVSNAKLQYAGWGPKGQQLIFIF-ENNIYYCAHVGKQAIRVVSTGKEGVIYNGLSDWLYEEE-----ILKTH  175 (465)
T ss_dssp             CCEECCCTTCCSCCCSBCCBCSSTTCEEEEE-TTEEEEESSSSSCCEEEECCCBTTTEEEEECCHHHHHT-----TSSSS
T ss_pred             ceeeccCccCCccccceeeeccCCceEEEEe-cceEEEEecCCCceEEEecccCcceeeccccchhhhhh-----hcccc
Confidence                                 7888887765 567888888777665554322111 1100000000000     01122


Q ss_pred             EEEEEcCCCCeEEEeeecCCCcEEEEee
Q 042146          232 ISVASHPAKNIIASGALDNDRTMKIWTQ  259 (262)
Q Consensus       232 ~~~~~~p~~~~l~~~~~d~d~~i~iw~~  259 (262)
                      ..+.|||||+.||....| +..|..+.+
T Consensus       176 ~a~~WSPDgk~iaf~~~D-~s~V~~~~~  202 (465)
T d1xfda1         176 IAHWWSPDGTRLAYAAIN-DSRVPIMEL  202 (465)
T ss_dssp             EEEEECTTSSEEEEEEEE-CTTSCEEEE
T ss_pred             ceEEECCCCCeEEEEEec-ccccceeec
Confidence            578899999999998765 666766655

>d1k3ia3 b.69.1.1 (A:151-537) Galactose oxidase, central domain {Fungi (Fusarium sp.) [TaxId: 29916]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Galactose oxidase, central domain
family: Galactose oxidase, central domain
domain: Galactose oxidase, central domain
species: Fungi (Fusarium sp.) [TaxId: 29916]

Probab=97.64  E-value=0.0064  Score=45.77  Aligned_cols=93  Identities=11%  Similarity=0.107  Sum_probs=59.0

Q ss_pred             eEEEEecCCCcccee--c-ccCCcceEEEEEeCCCCEEEeecCC-CeEEEEECCCCeeeeeeec-CCCCeeeEEEccCCC
Q 042146           81 TIRLWDVPTATSLKT--L-IGHTNYVFCINFNPQSNRIVSDTFN-ETIRIWDIKTGKCLKVLPA-HSDPVTAIDFNRDGT  155 (262)
Q Consensus        81 ~i~v~d~~~~~~~~~--~-~~~~~~v~~~~~~~~~~~l~~~~~d-g~i~vwd~~~~~~~~~~~~-~~~~v~~~~~~~~~~  155 (262)
                      .+.+||..+++....  . ..+.......++.+++.+++.|+.+ ..+.+||..+..-...-.. ....-..++..++++
T Consensus        53 ~~~~yd~~t~~w~~~~~~~~~~~~~~~~~~~~~~g~i~v~Gg~~~~~~~~yd~~~~~w~~~~~~~~~r~~~~~~~~~dG~  132 (387)
T d1k3ia3          53 LTSSWDPSTGIVSDRTVTVTKHDMFCPGISMDGNGQIVVTGGNDAKKTSLYDSSSDSWIPGPDMQVARGYQSSATMSDGR  132 (387)
T ss_dssp             EEEEECTTTCCBCCCEEEECSCCCSSCEEEECTTSCEEEECSSSTTCEEEEEGGGTEEEECCCCSSCCSSCEEEECTTSC
T ss_pred             EEEEEECCCCcEeecCCCCCCcccceeEEEEecCCcEEEeecCCCcceeEecCccCcccccccccccccccceeeecCCc
Confidence            466788877654321  1 1232333456788899999988765 5899999987754322111 112234566778999


Q ss_pred             EEEEEeCC------CeEEEEeCCC
Q 042146          156 MIVTSSYD------GLYRILDAST  173 (262)
Q Consensus       156 ~l~~~~~d------g~i~~~d~~~  173 (262)
                      +++.++.+      ..+.+||...
T Consensus       133 v~v~GG~~~~~~~~~~v~~yd~~~  156 (387)
T d1k3ia3         133 VFTIGGSWSGGVFEKNGEVYSPSS  156 (387)
T ss_dssp             EEEECCCCCSSSCCCCEEEEETTT
T ss_pred             eeeeccccccccccceeeeecCCC
Confidence            99888753      3588898765

>d1fwxa2 b.69.3.1 (A:8-451) Nitrous oxide reductase, N-terminal domain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nitrous oxide reductase, N-terminal domain
family: Nitrous oxide reductase, N-terminal domain
domain: Nitrous oxide reductase, N-terminal domain
species: Paracoccus denitrificans [TaxId: 266]

Probab=97.49  E-value=0.0042  Score=47.17  Aligned_cols=156  Identities=10%  Similarity=0.065  Sum_probs=92.1

Q ss_pred             eEEEEecCCCccceecc-cCCcceEEEEEeC--CCCEEEeecCC------------------CeEEEEECCCCeeeeeee
Q 042146           81 TIRLWDVPTATSLKTLI-GHTNYVFCINFNP--QSNRIVSDTFN------------------ETIRIWDIKTGKCLKVLP  139 (262)
Q Consensus        81 ~i~v~d~~~~~~~~~~~-~~~~~v~~~~~~~--~~~~l~~~~~d------------------g~i~vwd~~~~~~~~~~~  139 (262)
                      .|.+.|+.+.+..+... .....+..++..+  +..+++.++.+                  +.+.+.|..+.+....+.
T Consensus       111 RVAvIdl~~fkt~kIi~iPn~~~~HG~r~~~~p~T~YV~~~~e~~vP~pndg~~l~d~~~y~~~~t~ID~~tm~V~~QV~  190 (459)
T d1fwxa2         111 RVARVRCDVMKCDAILEIPNAKGIHGLRPQKWPRSNYVFCNGEDETPLVNDGTNMEDVANYVNVFTAVDADKWEVAWQVL  190 (459)
T ss_dssp             EEEEEETTTTEEEEEEECSSCCSEEEEEECCSSBCSEEEEEECSCEESSCSSSSTTCGG-EEEEEEEEETTTTEEEEEEE
T ss_pred             eEEEEECcceeeeEEEecCCCCCCceeecccCCCeEEEEccCccccccCCCCccccchhhcceEEEEEecCCceEEEEee
Confidence            77777887776644322 2334566666654  55567765552                  236788999888777765


Q ss_pred             cCCCCeeeEEEccCCCEEEEEeCC--CeEEEEeCCCCCccEEEEEcC--------------CCeEEEEecCCC---ceee
Q 042146          140 AHSDPVTAIDFNRDGTMIVTSSYD--GLYRILDASTPNGKFILVGTL--------------DNTLRLWNYSTR---KILK  200 (262)
Q Consensus       140 ~~~~~v~~~~~~~~~~~l~~~~~d--g~i~~~d~~~~~~~~l~~~~~--------------dg~i~i~d~~~~---~~~~  200 (262)
                      . .+....+.++|+|+++++.+.+  ..+.+.++...+-.++++...              -+.+.+-|.+..   ..+.
T Consensus       191 V-~g~ld~~~~s~dGK~af~TsyNSE~g~~l~e~ta~e~D~i~V~n~~rie~av~~Gk~~eingV~VVD~~~~~~~~v~~  269 (459)
T d1fwxa2         191 V-SGNLDNCDADYEGKWAFSTSYNSEKGMTLPEMTAAEMDHIVVFNIAEIEKAIAAGDYQELNGVKVVDGRKEASSLFTR  269 (459)
T ss_dssp             E-SSCCCCEEECSSSSEEEEEESCTTCCSSHHHHTCCSEEEEEEEEHHHHHHHHHHTCSEEETTEEEEECSGG--CSSEE
T ss_pred             e-CCChhccccCCCCCEEEEEeccccCCcchhhcccccceEEEEechHHhHHhhhcCCcEEeCCceeecccccCCcceeE
Confidence            4 3456789999999998887743  222222222222222222110              012344444321   1122


Q ss_pred             EEeccCCceeEEEEEEecCCCeeEEccccceEEEEEcCCCCeEEEeeecCCCcEEEEeecc
Q 042146          201 TYSGYTNSKYCISSTFSVTNGKYIVSHRDPVISVASHPAKNIIASGALDNDRTMKIWTQEK  261 (262)
Q Consensus       201 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~d~d~~i~iw~~~~  261 (262)
                      .++                       -......+..+|||+++++++. -+.++.|.|+++
T Consensus       270 yIP-----------------------VpKsPHGV~vSPDGKyi~VaGK-Ls~tVSViD~~K  306 (459)
T d1fwxa2         270 YIP-----------------------IANNPHGCNMAPDKKHLCVAGK-LSPTVTVLDVTR  306 (459)
T ss_dssp             EEE-----------------------EESSCCCEEECTTSSEEEEECT-TSSBEEEEEGGG
T ss_pred             EEe-----------------------cCCCCCceEECCCCCEEEEeCC-cCCcEEEEEehh
Confidence            222                       2334568899999999998875 588999999864

>d1k32a2 b.68.7.1 (A:39-319) Tricorn protease N-terminal domain {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Tricorn protease N-terminal domain
family: Tricorn protease N-terminal domain
domain: Tricorn protease N-terminal domain
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=97.44  E-value=0.00052  Score=49.32  Aligned_cols=53  Identities=21%  Similarity=0.312  Sum_probs=41.1

Q ss_pred             EEeCC--CCEEEeecCCCeEEEEECCCCeeeeeeecCCCCeeeEEEccCCCEEEEEe
Q 042146          107 NFNPQ--SNRIVSDTFNETIRIWDIKTGKCLKVLPAHSDPVTAIDFNRDGTMIVTSS  161 (262)
Q Consensus       107 ~~~~~--~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~  161 (262)
                      ..+|+  |+.++..+ +|.|.+.|+..++.. .+..+.+.+...+|||||+.|+...
T Consensus         5 ~~sPdi~G~~v~f~~-~~dl~~~d~~~g~~~-~Lt~~~~~~~~p~~SPDG~~iaf~~   59 (281)
T d1k32a2           5 LLNPDIHGDRIIFVC-CDDLWEHDLKSGSTR-KIVSNLGVINNARFFPDGRKIAIRV   59 (281)
T ss_dssp             CEEEEEETTEEEEEE-TTEEEEEETTTCCEE-EEECSSSEEEEEEECTTSSEEEEEE
T ss_pred             ccCCCCCCCEEEEEe-CCcEEEEECCCCCEE-EEecCCCcccCEEECCCCCEEEEEE
Confidence            35788  99887665 567999999887754 5556677889999999999887654

>d1utca2 b.69.6.1 (A:4-330) Clathrin heavy-chain terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Clathrin heavy-chain terminal domain
family: Clathrin heavy-chain terminal domain
domain: Clathrin heavy-chain terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=97.43  E-value=0.0099  Score=42.77  Aligned_cols=90  Identities=12%  Similarity=0.245  Sum_probs=59.0

Q ss_pred             eEEEEecCCCccceecccCCcceEEEEEeCCCCEEEeecCCCeEEEEECCC-CeeeeeeecCC----CCeeeEEEccCCC
Q 042146           81 TIRLWDVPTATSLKTLIGHTNYVFCINFNPQSNRIVSDTFNETIRIWDIKT-GKCLKVLPAHS----DPVTAIDFNRDGT  155 (262)
Q Consensus        81 ~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~-~~~~~~~~~~~----~~v~~~~~~~~~~  155 (262)
                      .+.++|+++.+.++.+.- ...|.-=.|-.+ +.|+-.+ +..|+-|+++. ..+...+..|.    ..|..-..+++.+
T Consensus        84 ~LQiFnletK~klks~~~-~e~VvfWkWis~-~~L~lVT-~taVYHW~~~g~s~P~k~fdR~~~L~~~QIInY~~d~~~k  160 (327)
T d1utca2          84 TLQIFNIEMKSKMKAHTM-TDDVTFWKWISL-NTVALVT-DNAVYHWSMEGESQPVKMFDRHSSLAGCQIINYRTDAKQK  160 (327)
T ss_dssp             EEEEEETTTTEEEEEEEC-SSCCCEEEESSS-SEEEEEC-SSEEEEEESSSSCCCEEEEECCGGGTTCEEEEEEECTTSC
T ss_pred             eEEEEehhHhhhhceEEc-CCCcEEEEecCC-CEEEEEc-CCceEEEcccCCCCchhhhhhcccccCceEEEEEECCCCC
Confidence            799999999988877653 345656666644 4444443 45799999953 34566665543    3666777778888


Q ss_pred             EEEEEe---C----CCeEEEEeCCC
Q 042146          156 MIVTSS---Y----DGLYRILDAST  173 (262)
Q Consensus       156 ~l~~~~---~----dg~i~~~d~~~  173 (262)
                      +++..+   .    .|.+.+|....
T Consensus       161 W~~l~GI~~~~~~i~G~mQLYS~er  185 (327)
T d1utca2         161 WLLLTGISAQQNRVVGAMQLYSVDR  185 (327)
T ss_dssp             EEEEEEEEEETTEEEEEEEEEETTT
T ss_pred             EEEEEeEecCCCceeEEEEEEEecc
Confidence            765543   2    35677887665

>d2ghsa1 b.68.6.1 (A:20-314) Regucalcin {Agrobacterium tumefaciens [TaxId: 358]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Regucalcin
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=97.26  E-value=0.017  Score=41.86  Aligned_cols=93  Identities=14%  Similarity=0.089  Sum_probs=57.8

Q ss_pred             CcceEEEEEeCCCCEEEeecCCCeEEEEECCCCeeeeeeec----CCCCeeeEEEccCCCEEEEEeCC----CeEEEEeC
Q 042146          100 TNYVFCINFNPQSNRIVSDTFNETIRIWDIKTGKCLKVLPA----HSDPVTAIDFNRDGTMIVTSSYD----GLYRILDA  171 (262)
Q Consensus       100 ~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~----~~~~v~~~~~~~~~~~l~~~~~d----g~i~~~d~  171 (262)
                      ...+.++++.+++.++++. .+ -|.++|..+++.......    ....++++.+.|+|++.++....    +.-.+|.+
T Consensus        58 ~~~~~~i~~~~dg~l~va~-~~-gl~~~d~~tg~~~~l~~~~~~~~~~~~nd~~vd~~G~iw~~~~~~~~~~~~g~l~~~  135 (295)
T d2ghsa1          58 PFMGSALAKISDSKQLIAS-DD-GLFLRDTATGVLTLHAELESDLPGNRSNDGRMHPSGALWIGTMGRKAETGAGSIYHV  135 (295)
T ss_dssp             SSCEEEEEEEETTEEEEEE-TT-EEEEEETTTCCEEEEECSSTTCTTEEEEEEEECTTSCEEEEEEETTCCTTCEEEEEE
T ss_pred             CCCcEEEEEecCCCEEEEE-eC-ccEEeecccceeeEEeeeecCCCcccceeeEECCCCCEEEEeccccccccceeEeee
Confidence            3467889999888777664 34 588899998875433221    12257889999999876654321    22233332


Q ss_pred             CC-------------------CCcc-EEEEEcCCCeEEEEecC
Q 042146          172 ST-------------------PNGK-FILVGTLDNTLRLWNYS  194 (262)
Q Consensus       172 ~~-------------------~~~~-~l~~~~~dg~i~i~d~~  194 (262)
                      ..                   ++++ ++++.+..+.|+.|++.
T Consensus       136 ~~g~~~~~~~~~~~~Ng~~~s~d~~~l~~~dt~~~~I~~~~~d  178 (295)
T d2ghsa1         136 AKGKVTKLFADISIPNSICFSPDGTTGYFVDTKVNRLMRVPLD  178 (295)
T ss_dssp             ETTEEEEEEEEESSEEEEEECTTSCEEEEEETTTCEEEEEEBC
T ss_pred             cCCcEEEEeeccCCcceeeecCCCceEEEeecccceeeEeeec
Confidence            22                   4554 44555667778777764

>d1kv9a2 b.70.1.1 (A:1-560) Quinoprotein alcohol dehydrogenase, N-terminal domain {Pseudomonas putida, hk5 [TaxId: 303]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Quinoprotein alcohol dehydrogenase, N-terminal domain
species: Pseudomonas putida, hk5 [TaxId: 303]

Probab=96.93  E-value=0.064  Score=42.61  Aligned_cols=125  Identities=12%  Similarity=0.131  Sum_probs=80.6

Q ss_pred             eEEEEecCCCccceecccCCc---------ceEEEEEeCCC---CEEEeecCCCeEEEEECCCCeeeeeeecCC------
Q 042146           81 TIRLWDVPTATSLKTLIGHTN---------YVFCINFNPQS---NRIVSDTFNETIRIWDIKTGKCLKVLPAHS------  142 (262)
Q Consensus        81 ~i~v~d~~~~~~~~~~~~~~~---------~v~~~~~~~~~---~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~------  142 (262)
                      .|...|+++++....++....         ...-..+..++   ..++.+..+|.+.++|..+++++...+.-.      
T Consensus       271 sivAld~~tG~~~W~~Q~~~~D~wd~d~~~~~~l~~~~~~g~~~~~v~~~~k~G~~~~lDr~tG~~i~~~~~~~~~~~~~  350 (560)
T d1kv9a2         271 SILAIRPDTGKLAWHYQVTPGDSWDFTATQQITLAELNIDGKPRKVLMQAPKNGFFYVLDRTNGKLISAEKFGKVTWAEK  350 (560)
T ss_dssp             EEEEECTTTCCEEEEEESSTTCCSCCCCCSCEEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEEEESSCCCSEEE
T ss_pred             eeEEecCCccceeEEEeccccccccccccceeeeeeeecCCceeeeeeecCccceEEEEecCCCcccccccccccccccc
Confidence            566778888887655432211         11112222233   357788999999999999998765432110      


Q ss_pred             ----------------------------C--CeeeEEEccCCCEEEEEeCC-----------------------------
Q 042146          143 ----------------------------D--PVTAIDFNRDGTMIVTSSYD-----------------------------  163 (262)
Q Consensus       143 ----------------------------~--~v~~~~~~~~~~~l~~~~~d-----------------------------  163 (262)
                                                  +  .-...+++|+..+++....+                             
T Consensus       351 ~d~~~~~~~~~~~~~~~~~~~~~~p~~~Gg~~w~~~a~dp~~~~~yvp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  430 (560)
T d1kv9a2         351 VDLATGRPVEAPGVRYEKEPIVMWPSPFGAHNWHSMSFNPGTGLVYIPYQEVPGVYRNEGKDFVTRKAFNTAAGFADATD  430 (560)
T ss_dssp             ECTTTCCEEECTTTTCSSSCEEESSCTTCSSCSSCCEEETTTTEEEEEEEECCEEECCCGGGCCCCSSCCCSSCGGGCCC
T ss_pred             cChhhccccccccccccccceeeeeccccccccccccccCCCCeeecccccccceeeccccccccccccccccCcccccC
Confidence                                        0  01235667766666654422                             


Q ss_pred             -------CeEEEEeCCC-------------------CCccEEEEEcCCCeEEEEecCCCceeeEEecc
Q 042146          164 -------GLYRILDAST-------------------PNGKFILVGTLDNTLRLWNYSTRKILKTYSGY  205 (262)
Q Consensus       164 -------g~i~~~d~~~-------------------~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~  205 (262)
                             |.+.-+|+.+                   ..+.++++|+.||.++-+|.++|+.+.+++..
T Consensus       431 ~p~~~~~G~l~A~D~~tGk~~W~~~~~~~~~gg~l~TagglVF~G~~dg~l~A~Da~tGe~LW~~~l~  498 (560)
T d1kv9a2         431 VPAAVVSGALLAWDPVKQKAAWKVPYPTHWNGGTLSTAGNLVFQGTAAGQMHAYSADKGEALWQFEAQ  498 (560)
T ss_dssp             CCGGGCEEEEEEEETTTTEEEEEEEESSSCCCCEEEETTTEEEEECTTSEEEEEETTTCCEEEEEECS
T ss_pred             CCCcccccceEEEeCCCCeEeeeccCCCCCCCceeEECCCEEEEECCCCcEEEEECCCCcEeEEEECC
Confidence                   4566677666                   24567888999999999999999999988753

>d2ad6a1 b.70.1.1 (A:1-571) Methanol dehydrogenase, heavy chain {Methylophilus methylotrophus, w3a1 [TaxId: 17]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Methanol dehydrogenase, heavy chain
species: Methylophilus methylotrophus, w3a1 [TaxId: 17]

Probab=96.80  E-value=0.06  Score=42.88  Aligned_cols=124  Identities=14%  Similarity=0.113  Sum_probs=79.7

Q ss_pred             eEEEEecCCCccceecccCCc---------ceEEEEEeCCCC---EEEeecCCCeEEEEECCCCeeeeeeecCC------
Q 042146           81 TIRLWDVPTATSLKTLIGHTN---------YVFCINFNPQSN---RIVSDTFNETIRIWDIKTGKCLKVLPAHS------  142 (262)
Q Consensus        81 ~i~v~d~~~~~~~~~~~~~~~---------~v~~~~~~~~~~---~l~~~~~dg~i~vwd~~~~~~~~~~~~~~------  142 (262)
                      .+...|.++++.+..++....         ......+..+++   .++.++.+|.+.+.|.++++++...+...      
T Consensus       273 svvAld~~TG~~~W~~q~~~~D~Wd~D~~~~~~l~~~~~~g~~~~~v~~~~k~G~l~vlDr~tG~~i~~~~~~~~~~~~~  352 (571)
T d2ad6a1         273 TIWGRDLDTGMAKWGYQKTPHDEWDFAGVNQMVLTDQPVNGKMTPLLSHIDRNGILYTLNRENGNLIVAEKVDPAVNVFK  352 (571)
T ss_dssp             EEEEEETTTCCEEEEEESSTTCSSCCCCCCCCEEEEEEETTEEEEEEEEECTTSEEEEEETTTCCEEEEEESSTTCCSEE
T ss_pred             ceeeeeccchhheecccccCccccccccccccceeeeeccCccccceeeccccceEEEEecCCCcEeeeeccCCcccccc
Confidence            677788888887766553211         111222222443   46788899999999999998764321100      


Q ss_pred             -------------------------------CC--eeeEEEccCCCEEEEEeCC--------------------------
Q 042146          143 -------------------------------DP--VTAIDFNRDGTMIVTSSYD--------------------------  163 (262)
Q Consensus       143 -------------------------------~~--v~~~~~~~~~~~l~~~~~d--------------------------  163 (262)
                                                     +.  -...+++|+..+++....+                          
T Consensus       353 ~~~~~~~~~i~~~~~~~~~~~~g~~~~p~~~Gg~~w~~~a~dP~~~~~yv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  432 (571)
T d2ad6a1         353 KVDLKTGTPVRDPEFATRMDHKGTNICPSAMGFHNQGVDSYDPESRTLYAGLNHICMDWEPFMLPYRAGQFFVGATLAMY  432 (571)
T ss_dssp             EECTTTCSEEECGGGCCCTTCCEEEESSCTTCSSCSCBCEEETTTTEEEEEEECEEEEEEECCCCCCTTSCCCCEEEEEE
T ss_pred             cccccccccccCcccccccccCceEEEeccccccccccceECCCCceEEEeccccccccccccccccCCccccccceeec
Confidence                                           00  0125677766666654433                          


Q ss_pred             -----------CeEEEEeCCC-------------------CCccEEEEEcCCCeEEEEecCCCceeeEEec
Q 042146          164 -----------GLYRILDAST-------------------PNGKFILVGTLDNTLRLWNYSTRKILKTYSG  204 (262)
Q Consensus       164 -----------g~i~~~d~~~-------------------~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~  204 (262)
                                 |.|.-+|+.+                   ..+.++++|+.||.++-+|.++|+.+.++.-
T Consensus       433 ~~~~~~~~~~~G~l~AiD~~TG~~~W~~~~~~~~~~g~l~TagglVf~G~~dg~l~A~Da~tGe~lW~~~l  503 (571)
T d2ad6a1         433 PGPNGPTKKEMGQIRAFDLTTGKAKWTKWEKFAAWGGTLYTKGGLVWYATLDGYLKALDNKDGKELWNFKM  503 (571)
T ss_dssp             ECTTSTTSCCCEEEEEECTTTCCEEEEEEESSCCCSBCEEETTTEEEEECTTSEEEEEETTTCCEEEEEEC
T ss_pred             cccCCcccCCcccEEEeccCCCceeeEcCCCCCCCcceeEecCCEEEEECCCCeEEEEECCCCcEEEEEEC
Confidence                       3455666655                   2466788899999999999999999988874

>d1ijqa1 b.68.5.1 (A:377-642) Low density lipoprotein (LDL) receptor {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: YWTD domain
family: YWTD domain
domain: Low density lipoprotein (LDL) receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.76  E-value=0.048  Score=38.73  Aligned_cols=153  Identities=11%  Similarity=0.004  Sum_probs=82.3

Q ss_pred             cCcCceEEEEEccCCCeEEEe-cCCCeEEEeecCCCCCCCCCC-------CCCC-ccccCCcccccc----ceeEEEEec
Q 042146           21 GHLRAVSYVKFSHDGRLLTSS-SAEKTLLTYSLSSISNFDSTP-------PSPL-QKFTGHEQGISD----LATIRLWDV   87 (262)
Q Consensus        21 ~h~~~v~~~~~~~~~~~l~s~-~~d~~i~iw~~~~~~~~~~~~-------~~~~-~~~~~~~~~v~~----~~~i~v~d~   87 (262)
                      .....+.+++|.+..+.|.-. ...+.|..-++..........       ..+. ..+......++.    ...|.+.++
T Consensus        27 ~~~~~~~~id~d~~~~~lYw~D~~~~~I~~~~l~~~~~~~~~~~~~~~~~~~p~glAvD~~~~~lY~~d~~~~~I~v~~~  106 (266)
T d1ijqa1          27 PNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADT  106 (266)
T ss_dssp             CSCSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEET
T ss_pred             CCCCceEEEEEEeCCCEEEEEECCCCEEEEEEecCCCCCcceEEEEeCCCCCcceEEEeeccceEEEEecCCCEEEeEec
Confidence            345667899999877766554 456677766664321100000       0000 000000111111    115677776


Q ss_pred             CCCccceecccCCcceEEEEEeCCCCEEEee--cCCCeEEEEECCCCeeeeeeecCCCCeeeEEEccCCCEEEEE-eCCC
Q 042146           88 PTATSLKTLIGHTNYVFCINFNPQSNRIVSD--TFNETIRIWDIKTGKCLKVLPAHSDPVTAIDFNRDGTMIVTS-SYDG  164 (262)
Q Consensus        88 ~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~--~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~~dg  164 (262)
                      ........+.........++++|...+++-.  +..+.|...++............-.....+++.+.++.|+.+ ...+
T Consensus       107 ~g~~~~~~~~~~~~~P~~l~vd~~~g~ly~~~~~~~~~I~r~~~dGs~~~~l~~~~~~~p~gl~iD~~~~~lYw~d~~~~  186 (266)
T d1ijqa1         107 KGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVTENIQWPNGITLDLLSGRLYWVDSKLH  186 (266)
T ss_dssp             TSSSEEEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCCEEEEECSSCSCEEEEEEETTTTEEEEEETTTT
T ss_pred             CCceEEEEEcCCCCCcceEEEEcccCeEEEeccCCCcceeEeccCCCceecccccccceeeEEEeeccccEEEEecCCcC
Confidence            5544434344445667899999966555433  234567777775443333333333567899999877766655 5567


Q ss_pred             eEEEEeCCC
Q 042146          165 LYRILDAST  173 (262)
Q Consensus       165 ~i~~~d~~~  173 (262)
                      .|...++..
T Consensus       187 ~I~~~~~dG  195 (266)
T d1ijqa1         187 SISSIDVNG  195 (266)
T ss_dssp             EEEEEETTS
T ss_pred             EEEEEECCC
Confidence            888888765

>d1fwxa2 b.69.3.1 (A:8-451) Nitrous oxide reductase, N-terminal domain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nitrous oxide reductase, N-terminal domain
family: Nitrous oxide reductase, N-terminal domain
domain: Nitrous oxide reductase, N-terminal domain
species: Paracoccus denitrificans [TaxId: 266]

Probab=96.67  E-value=0.0082  Score=45.53  Aligned_cols=112  Identities=12%  Similarity=0.150  Sum_probs=72.4

Q ss_pred             eEEEEecCCCccceecccCCcceEEEEEeCCCCEEEeecCC--------------------------------------C
Q 042146           81 TIRLWDVPTATSLKTLIGHTNYVFCINFNPQSNRIVSDTFN--------------------------------------E  122 (262)
Q Consensus        81 ~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d--------------------------------------g  122 (262)
                      .+.++|..+.+...+..- ......+.++|+|+++++.+.+                                      +
T Consensus       174 ~~t~ID~~tm~V~~QV~V-~g~ld~~~~s~dGK~af~TsyNSE~g~~l~e~ta~e~D~i~V~n~~rie~av~~Gk~~ein  252 (459)
T d1fwxa2         174 VFTAVDADKWEVAWQVLV-SGNLDNCDADYEGKWAFSTSYNSEKGMTLPEMTAAEMDHIVVFNIAEIEKAIAAGDYQELN  252 (459)
T ss_dssp             EEEEEETTTTEEEEEEEE-SSCCCCEEECSSSSEEEEEESCTTCCSSHHHHTCCSEEEEEEEEHHHHHHHHHHTCSEEET
T ss_pred             EEEEEecCCceEEEEeee-CCChhccccCCCCCEEEEEeccccCCcchhhcccccceEEEEechHHhHHhhhcCCcEEeC
Confidence            567788887776655442 2345678999999998876532                                      1


Q ss_pred             eEEEEECCCC---eeeeeeecCCCCeeeEEEccCCCEEEEEe-CCCeEEEEeCCC-------------------------
Q 042146          123 TIRIWDIKTG---KCLKVLPAHSDPVTAIDFNRDGTMIVTSS-YDGLYRILDAST-------------------------  173 (262)
Q Consensus       123 ~i~vwd~~~~---~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~dg~i~~~d~~~-------------------------  173 (262)
                      -+.+-|.+..   ..+..+...+ ....+..+|||+++++++ .+.++.++|++.                         
T Consensus       253 gV~VVD~~~~~~~~v~~yIPVpK-sPHGV~vSPDGKyi~VaGKLs~tVSViD~~Ki~~~~~~~~~~~~~~~~e~elglgP  331 (459)
T d1fwxa2         253 GVKVVDGRKEASSLFTRYIPIAN-NPHGCNMAPDKKHLCVAGKLSPTVTVLDVTRFDAVFYENADPRSAVVAEPELGLGP  331 (459)
T ss_dssp             TEEEEECSGG--CSSEEEEEEES-SCCCEEECTTSSEEEEECTTSSBEEEEEGGGHHHHHHSCC-GGGGEEECCBCCSCE
T ss_pred             CceeecccccCCcceeEEEecCC-CCCceEECCCCCEEEEeCCcCCcEEEEEehhhhhhhcccCCccccEEeecccCcCc
Confidence            1233343321   1122232222 346789999999877766 789999999875                         


Q ss_pred             ------CCccEEEEEcCCCeEEEEecC
Q 042146          174 ------PNGKFILVGTLDNTLRLWNYS  194 (262)
Q Consensus       174 ------~~~~~l~~~~~dg~i~i~d~~  194 (262)
                            ..|.-..+---|..|.-|++.
T Consensus       332 Lht~fd~~g~aytslfids~v~kw~~~  358 (459)
T d1fwxa2         332 LHTAFDGRGNAYTSLFLDSQVVKWNIE  358 (459)
T ss_dssp             EEEEECTTSEEEEEETTTTEEEEEEHH
T ss_pred             cccccCCCceEEEEeeccceEEEEecc
Confidence                  344444444588889999985

>d1kv9a2 b.70.1.1 (A:1-560) Quinoprotein alcohol dehydrogenase, N-terminal domain {Pseudomonas putida, hk5 [TaxId: 303]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Quinoprotein alcohol dehydrogenase, N-terminal domain
species: Pseudomonas putida, hk5 [TaxId: 303]

Probab=96.40  E-value=0.16  Score=40.31  Aligned_cols=93  Identities=15%  Similarity=0.184  Sum_probs=54.3

Q ss_pred             eEEEEecCCCccceecccC------------------------------Ccc-eEEEEEeCCCCEEEeecC---------
Q 042146           81 TIRLWDVPTATSLKTLIGH------------------------------TNY-VFCINFNPQSNRIVSDTF---------  120 (262)
Q Consensus        81 ~i~v~d~~~~~~~~~~~~~------------------------------~~~-v~~~~~~~~~~~l~~~~~---------  120 (262)
                      .|.-+|.++++.+..+..-                              ... -..+++.|...+++.+..         
T Consensus       179 ~v~a~D~~TG~~~W~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~W~~~s~D~~~~l~y~~tgn~~~~~~~~  258 (560)
T d1kv9a2         179 FVSAYDADTGKLAWRFYTVPGDPALPYEHPELREAAKTWQGDQYWKLGGGGTVWDSMAYDPELDLLYVGTGNGSPWNREV  258 (560)
T ss_dssp             EEEEEETTTCCEEEEEESSCCCTTSCCSSHHHHHHHTTCCSSCHHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHH
T ss_pred             eEEEEECCCceEEeeeeeccccccCCccccccccccccccccccccccCCCCcccccccccccCeeeecCCCCccccccc
Confidence            6888999999887765310                              011 123566776666654221         


Q ss_pred             ----------CCeEEEEECCCCeeeeeeecCCCCeee---------EEEccCC---CEEEEEeCCCeEEEEeCCC
Q 042146          121 ----------NETIRIWDIKTGKCLKVLPAHSDPVTA---------IDFNRDG---TMIVTSSYDGLYRILDAST  173 (262)
Q Consensus       121 ----------dg~i~vwd~~~~~~~~~~~~~~~~v~~---------~~~~~~~---~~l~~~~~dg~i~~~d~~~  173 (262)
                                ...|.-.|+++++....++.....+..         +....++   ..++.+..+|.+.++|..+
T Consensus       259 ~~~~~g~n~~s~sivAld~~tG~~~W~~Q~~~~D~wd~d~~~~~~l~~~~~~g~~~~~v~~~~k~G~~~~lDr~t  333 (560)
T d1kv9a2         259 RSPGGGDNLYLSSILAIRPDTGKLAWHYQVTPGDSWDFTATQQITLAELNIDGKPRKVLMQAPKNGFFYVLDRTN  333 (560)
T ss_dssp             HSTTCCCCTTTTEEEEECTTTCCEEEEEESSTTCCSCCCCCSCEEEEEEEETTEEEEEEEECCTTSEEEEEETTT
T ss_pred             ccccCCccccceeeEEecCCccceeEEEeccccccccccccceeeeeeeecCCceeeeeeecCccceEEEEecCC
Confidence                      245777899999988776543333222         1112233   2456667777777777654

>d1kb0a2 b.70.1.1 (A:1-573) Quinoprotein alcohol dehydrogenase, N-terminal domain {Comamonas testosteroni [TaxId: 285]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Quinoprotein alcohol dehydrogenase, N-terminal domain
species: Comamonas testosteroni [TaxId: 285]

Probab=96.25  E-value=0.041  Score=43.90  Aligned_cols=127  Identities=13%  Similarity=0.139  Sum_probs=73.7

Q ss_pred             EEEccCCCeEEEecCCCeEEEeecCCCCCCCCCCCCCCc-------c-ccCCccccccceeEEEEecCCCccceecccCC
Q 042146           29 VKFSHDGRLLTSSSAEKTLLTYSLSSISNFDSTPPSPLQ-------K-FTGHEQGISDLATIRLWDVPTATSLKTLIGHT  100 (262)
Q Consensus        29 ~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~-------~-~~~~~~~v~~~~~i~v~d~~~~~~~~~~~~~~  100 (262)
                      ++++|+..+++....+....++.................       . .......-...+.+.-||+.+++.+.+.+...
T Consensus       398 ~a~dp~~~~~yv~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~p~~~~~~G~l~AiD~~tGk~~W~~~~~~  477 (573)
T d1kb0a2         398 MSFNPQTGLVYLPAQNVPVNLMDDKKWEFNQAGPGKPQSGTGWNTAKFFNAEPPKSKPFGRLLAWDPVAQKAAWSVEHVS  477 (573)
T ss_dssp             CEEETTTTEEEEEEEECCCEEEECTTCCTTCCCTTSTTGGGTCCCCEEECSSCCCSCCEEEEEEEETTTTEEEEEEEESS
T ss_pred             cccCCCcceEEeeccccceeeecccccccccCCCCccccccccccccccccCCCCCCCcccEEEeCCCCCceEeeecCCC
Confidence            578888888887777766666554332211111111100       0 00111111123478899999999887765322


Q ss_pred             cceEEEEEeCCCCEEEeecCCCeEEEEECCCCeeeeeeecCCCCe-eeEEEccCCCE
Q 042146          101 NYVFCINFNPQSNRIVSDTFNETIRIWDIKTGKCLKVLPAHSDPV-TAIDFNRDGTM  156 (262)
Q Consensus       101 ~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~v-~~~~~~~~~~~  156 (262)
                       +...=.....+.++++|+.||.++.+|.++|+.+.+++...+.. .=+.|..+|++
T Consensus       478 -p~~gg~lstagglVF~G~~dg~l~A~Da~TGe~LW~~~~~~~~~~~P~ty~~~GkQ  533 (573)
T d1kb0a2         478 -PWNGGTLTTAGNVVFQGTADGRLVAYHAATGEKLWEAPTGTGVVAAPSTYMVDGRQ  533 (573)
T ss_dssp             -SCCCCEEEETTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEE
T ss_pred             -CCCCceEEEcCCEEEEECCCCeEEEEECCCCcEeEEEECCCCccccCEEEEECCEE
Confidence             11111233368889999999999999999999999986532211 11455567763

>d1w6sa_ b.70.1.1 (A:) Methanol dehydrogenase, heavy chain {Methylobacterium extorquens [TaxId: 408]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Methanol dehydrogenase, heavy chain
species: Methylobacterium extorquens [TaxId: 408]

Probab=96.21  E-value=0.21  Score=39.85  Aligned_cols=69  Identities=20%  Similarity=0.214  Sum_probs=40.9

Q ss_pred             EEEEeCCCCEEEeecC----------------CCeEEEEECCCCeeeeeeecCCCCee---------eEEE-ccCC---C
Q 042146          105 CINFNPQSNRIVSDTF----------------NETIRIWDIKTGKCLKVLPAHSDPVT---------AIDF-NRDG---T  155 (262)
Q Consensus       105 ~~~~~~~~~~l~~~~~----------------dg~i~vwd~~~~~~~~~~~~~~~~v~---------~~~~-~~~~---~  155 (262)
                      .+++.+...+++.+..                ...|.-.|+++++.+..++.....+.         -+.. ..++   .
T Consensus       245 ~~s~D~~~~lvy~~tg~~~p~~~~~r~g~n~ys~sivAlD~~TG~~~W~~Q~~~~D~Wd~d~~~~~~l~d~~~~~G~~~~  324 (596)
T d1w6sa_         245 WYAYDPGTNLIYFGTGNPAPWNETMRPGDNKWTMTIFGRDADTGEAKFGYQKTPHDEWDYAGVNVMMLSEQKDKDGKARK  324 (596)
T ss_dssp             CCEEETTTTEEEEECCCCSCSCGGGSCSCCTTSSEEEEEETTTCCEEEEEESSTTCSSCCCCCCCCEEEEEECTTSCEEE
T ss_pred             ccccccCCCeeecccccccccccccccccccccccccccccccccccccccceeccccCCccccceeeeecccccccccc
Confidence            4566776666665432                24577889999998887654222111         1111 1233   2


Q ss_pred             EEEEEeCCCeEEEEeCCC
Q 042146          156 MIVTSSYDGLYRILDAST  173 (262)
Q Consensus       156 ~l~~~~~dg~i~~~d~~~  173 (262)
                      .++....+|.+.++|..+
T Consensus       325 ~v~~~~k~G~~~vlDr~t  342 (596)
T d1w6sa_         325 LLTHPDRNGIVYTLDRTD  342 (596)
T ss_dssp             EEEEECTTSEEEEEETTT
T ss_pred             ceeccccccceeeecCCC
Confidence            566677788888888664

>d1v04a_ b.68.6.2 (A:) Serum paraoxonase/arylesterase 1, PON1 {Rabit (Oryctolagus cuniculus) [TaxId: 9986]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: Serum paraoxonase/arylesterase 1, PON1
domain: Serum paraoxonase/arylesterase 1, PON1
species: Rabit (Oryctolagus cuniculus) [TaxId: 9986]

Probab=96.17  E-value=0.089  Score=38.82  Aligned_cols=37  Identities=8%  Similarity=0.157  Sum_probs=27.9

Q ss_pred             EEccccceEEEEEcCCCCeEEEeeecCCCcEEEEeecc
Q 042146          224 IVSHRDPVISVASHPAKNIIASGALDNDRTMKIWTQEK  261 (262)
Q Consensus       224 ~~~~~~~v~~~~~~p~~~~l~~~~~d~d~~i~iw~~~~  261 (262)
                      +...-...+.++++|++++|+.+.. ..+.|+.|+++.
T Consensus       201 ~~~~l~~pNGI~~s~d~~~lyVa~t-~~~~i~~y~~~~  237 (340)
T d1v04a_         201 VAEGFDFANGINISPDGKYVYIAEL-LAHKIHVYEKHA  237 (340)
T ss_dssp             EEEEESSEEEEEECTTSSEEEEEEG-GGTEEEEEEECT
T ss_pred             EcCCCCccceeEECCCCCEEEEEeC-CCCeEEEEEeCC
Confidence            3334567899999999998877764 478898888753

>d1npea_ b.68.5.1 (A:) Nidogen {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: YWTD domain
family: YWTD domain
domain: Nidogen
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.06  E-value=0.13  Score=36.24  Aligned_cols=107  Identities=9%  Similarity=0.007  Sum_probs=63.9

Q ss_pred             cccCcCceEEEEEccCCCeEEEe-cCCCeEEEeecCCCCCCCCCCCCCCccccCCccccccceeEEEEecCCCccceecc
Q 042146           19 LNGHLRAVSYVKFSHDGRLLTSS-SAEKTLLTYSLSSISNFDSTPPSPLQKFTGHEQGISDLATIRLWDVPTATSLKTLI   97 (262)
Q Consensus        19 ~~~h~~~v~~~~~~~~~~~l~s~-~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~i~v~d~~~~~~~~~~~   97 (262)
                      +..+...+.+++|.+..+.+.-+ ..++.|+..+++                                   .......+.
T Consensus        31 ~~~~~~~~~~ld~D~~~~~iywsd~~~~~I~~~~l~-----------------------------------g~~~~~v~~   75 (263)
T d1npea_          31 LHIPAKVIIGLAFDCVDKVVYWTDISEPSIGRASLH-----------------------------------GGEPTTIIR   75 (263)
T ss_dssp             EEEEEEEEEEEEEETTTTEEEEEETTTTEEEEEESS-----------------------------------SCCCEEEEC
T ss_pred             cccCCCcEEEEEEEeCCCEEEEEECCCCeEEEEEcc-----------------------------------cCCcEEEEE
Confidence            33444557788888776655554 445555555432                                   222222222


Q ss_pred             cCCcceEEEEEeCCCCEEE-eecCCCeEEEEECCCCeeeeeeecCCCCeeeEEEccCCCEEEEE
Q 042146           98 GHTNYVFCINFNPQSNRIV-SDTFNETIRIWDIKTGKCLKVLPAHSDPVTAIDFNRDGTMIVTS  160 (262)
Q Consensus        98 ~~~~~v~~~~~~~~~~~l~-~~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~  160 (262)
                      .....+..++++.-+..|+ +-...+.|.+.++........+.........++++|...+++..
T Consensus        76 ~~~~~p~~iAvD~~~~~lY~~d~~~~~I~~~~~dg~~~~~l~~~~l~~p~~l~vdp~~g~ly~t  139 (263)
T d1npea_          76 QDLGSPEGIALDHLGRTIFWTDSQLDRIEVAKMDGTQRRVLFDTGLVNPRGIVTDPVRGNLYWT  139 (263)
T ss_dssp             TTCCCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSSEEEEEEETTTTEEEEE
T ss_pred             eccccccEEEEeccCCeEEEeccCCCEEEEEecCCceEEEEecccccCCcEEEEecccCcEEEe
Confidence            2234678899987555554 55667899999987554433333334567899999966655544

>d2ad6a1 b.70.1.1 (A:1-571) Methanol dehydrogenase, heavy chain {Methylophilus methylotrophus, w3a1 [TaxId: 17]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Methanol dehydrogenase, heavy chain
species: Methylophilus methylotrophus, w3a1 [TaxId: 17]

Probab=95.84  E-value=0.31  Score=38.62  Aligned_cols=69  Identities=16%  Similarity=0.150  Sum_probs=41.8

Q ss_pred             EEEEeCCCCEEEeecC----------------CCeEEEEECCCCeeeeeeecCCCCeee---------EEEccCCC---E
Q 042146          105 CINFNPQSNRIVSDTF----------------NETIRIWDIKTGKCLKVLPAHSDPVTA---------IDFNRDGT---M  156 (262)
Q Consensus       105 ~~~~~~~~~~l~~~~~----------------dg~i~vwd~~~~~~~~~~~~~~~~v~~---------~~~~~~~~---~  156 (262)
                      ..+++|...+++.+..                ...+.-.|+++++.+..++.....+..         .....+++   .
T Consensus       239 ~~s~D~~~g~~y~~tg~~~p~~~~~r~g~n~~s~svvAld~~TG~~~W~~q~~~~D~Wd~D~~~~~~l~~~~~~g~~~~~  318 (571)
T d2ad6a1         239 WYAYDPKLNLFYYGSGNPAPWNETMRPGDNKWTMTIWGRDLDTGMAKWGYQKTPHDEWDFAGVNQMVLTDQPVNGKMTPL  318 (571)
T ss_dssp             CCEEETTTTEEEEECCCCSCSCGGGSCSCCTTTTEEEEEETTTCCEEEEEESSTTCSSCCCCCCCCEEEEEEETTEEEEE
T ss_pred             ccccchhcCeeeeecccccCccccccccccccccceeeeeccchhheecccccCccccccccccccceeeeeccCccccc
Confidence            3566776666664443                346788899999988877643322221         11222333   4


Q ss_pred             EEEEeCCCeEEEEeCCC
Q 042146          157 IVTSSYDGLYRILDAST  173 (262)
Q Consensus       157 l~~~~~dg~i~~~d~~~  173 (262)
                      ++..+.+|.+.++|..+
T Consensus       319 v~~~~k~G~l~vlDr~t  335 (571)
T d2ad6a1         319 LSHIDRNGILYTLNREN  335 (571)
T ss_dssp             EEEECTTSEEEEEETTT
T ss_pred             eeeccccceEEEEecCC
Confidence            56677788888877654

>d1h6la_ b.68.3.1 (A:) Thermostable phytase (3-phytase) {Bacillus amyloliquefaciens [TaxId: 1390]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Thermostable phytase (3-phytase)
family: Thermostable phytase (3-phytase)
domain: Thermostable phytase (3-phytase)
species: Bacillus amyloliquefaciens [TaxId: 1390]

Probab=95.78  E-value=0.23  Score=36.64  Aligned_cols=170  Identities=10%  Similarity=0.191  Sum_probs=95.2

Q ss_pred             cCCCeEEEecCCCeEEEeecCCCCCCCCCCCCC--Cccc-----cCCcccc--cc-----ceeEEEEecCC-Cccceecc
Q 042146           33 HDGRLLTSSSAEKTLLTYSLSSISNFDSTPPSP--LQKF-----TGHEQGI--SD-----LATIRLWDVPT-ATSLKTLI   97 (262)
Q Consensus        33 ~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~--~~~~-----~~~~~~v--~~-----~~~i~v~d~~~-~~~~~~~~   97 (262)
                      |+..+++...+.+-|.+||++.........+..  +...     .+....+  ..     ...|.+|.+.. ...+..+.
T Consensus        38 p~~SlI~gTdK~~Gl~vYdL~G~~l~~~~~Gr~NNVDvr~~~~l~~~~~di~vasnR~~~~~~l~~~~id~~~~~l~~~~  117 (353)
T d1h6la_          38 PQNSKLITTNKKSGLAVYSLEGKMLHSYHTGKLNNVDIRYDFPLNGKKVDIAAASNRSEGKNTIEIYAIDGKNGTLQSIT  117 (353)
T ss_dssp             GGGCEEEEEETTSCCEEEETTCCEEEECCSSCEEEEEEEEEEEETTEEEEEEEEEECCTTTCEEEEEEEETTTTEEEECS
T ss_pred             cCccEEEEEcCcCCEEEEcCCCcEEEecccCCcCccccccccccCCcceEEEEEeCCcCcceeEEEEEecCccccccccc
Confidence            345677777777789999997533222111111  0000     0000000  00     11466666642 22222221


Q ss_pred             c-------CCcceEEEEE--eCC-CC-EEEeecCCCeEEEEECC---CC----eeeeeeecCCCCeeeEEEccCCCEEEE
Q 042146           98 G-------HTNYVFCINF--NPQ-SN-RIVSDTFNETIRIWDIK---TG----KCLKVLPAHSDPVTAIDFNRDGTMIVT  159 (262)
Q Consensus        98 ~-------~~~~v~~~~~--~~~-~~-~l~~~~~dg~i~vwd~~---~~----~~~~~~~~~~~~v~~~~~~~~~~~l~~  159 (262)
                      .       ....+..+++  +|. +. ++++...+|.+..|.+.   .+    +.++.+.. ...+..+++.+....|+.
T Consensus       118 ~~~~p~~~~~~~vYGlc~y~~~~~g~~~afv~~k~G~v~q~~l~~~~~g~v~~~lvr~f~~-~~q~EGCVvDde~~~Lyi  196 (353)
T d1h6la_         118 DPNRPIASAIDEVYGFSLYHSQKTGKYYAMVTGKEGEFEQYELNADKNGYISGKKVRAFKM-NSQTEGMAADDEYGSLYI  196 (353)
T ss_dssp             CSSSCEECSSSSCCCEEEEECTTTCCEEEEEECSSSEEEEEEEEECTTSSEEEEEEEEEEC-SSCEEEEEEETTTTEEEE
T ss_pred             ccccccccccCcceEEEEEecCCCCeEEEEEEcCCceEEEEEEEcCCCCceeeEeeeccCC-CCccceEEEeCCCCcEEE
Confidence            1       1123556666  563 44 46677788999888763   22    34555543 567899999998889999


Q ss_pred             EeCCCeEEEEeCCC-----------------------------C--CccEEEEEcCCCeEEEEecCC-CceeeEEe
Q 042146          160 SSYDGLYRILDAST-----------------------------P--NGKFILVGTLDNTLRLWNYST-RKILKTYS  203 (262)
Q Consensus       160 ~~~dg~i~~~d~~~-----------------------------~--~~~~l~~~~~dg~i~i~d~~~-~~~~~~~~  203 (262)
                      +-.+.-+..+++..                             .  +|-+|++.-.+.+..+||... .+.+..|.
T Consensus       197 sEE~~Giw~~~a~~~~~~~~~~i~~~~g~~l~~D~EGlaiy~~~~~~GylivSsQG~n~f~vydr~~~~~~~g~F~  272 (353)
T d1h6la_         197 AEEDEAIWKFSAEPDGGSNGTVIDRADGRHLTPDIEGLTIYYAADGKGYLLASSQGNSSYAIYERQGQNKYVADFQ  272 (353)
T ss_dssp             EETTTEEEEEESSTTSCSCCEEEEECSSSSCCSCEEEEEEEECGGGCEEEEEEEGGGTEEEEEESSTTCCEEEEEE
T ss_pred             ecCccceEEEEeccCCCccceeeecccCccccCCccccEEEEcCCCCeEEEEEcCCCCeEEEEecCCCccccceEE
Confidence            98887776666542                             1  233344444667888999876 35665654

>d1kb0a2 b.70.1.1 (A:1-573) Quinoprotein alcohol dehydrogenase, N-terminal domain {Comamonas testosteroni [TaxId: 285]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Quinoprotein alcohol dehydrogenase, N-terminal domain
species: Comamonas testosteroni [TaxId: 285]

Probab=95.62  E-value=0.38  Score=38.11  Aligned_cols=31  Identities=23%  Similarity=0.246  Sum_probs=27.0

Q ss_pred             CccEEEEEcCCCeEEEEecCCCceeeEEecc
Q 042146          175 NGKFILVGTLDNTLRLWNYSTRKILKTYSGY  205 (262)
Q Consensus       175 ~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~  205 (262)
                      .+.++++|+.||.++.+|.++|+.+.+++..
T Consensus       487 agglVF~G~~dg~l~A~Da~TGe~LW~~~~~  517 (573)
T d1kb0a2         487 AGNVVFQGTADGRLVAYHAATGEKLWEAPTG  517 (573)
T ss_dssp             TTTEEEEECTTSEEEEEETTTCCEEEEEECS
T ss_pred             cCCEEEEECCCCeEEEEECCCCcEeEEEECC
Confidence            5678888999999999999999999888753

>d1flga_ b.70.1.1 (A:) Ethanol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Ethanol dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=95.59  E-value=0.15  Score=40.56  Aligned_cols=79  Identities=18%  Similarity=0.210  Sum_probs=54.9

Q ss_pred             eeEEEEecCCCccceecccCCcceEEEEEeCCCCEEEeecCCCeEEEEECCCCeeeeeeecCCCC-eeeEEEccCCCE-E
Q 042146           80 ATIRLWDVPTATSLKTLIGHTNYVFCINFNPQSNRIVSDTFNETIRIWDIKTGKCLKVLPAHSDP-VTAIDFNRDGTM-I  157 (262)
Q Consensus        80 ~~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~-v~~~~~~~~~~~-l  157 (262)
                      +.|.-+|+.+++.+.+...+. ++..-.+...+.++++|+.||.++.+|.++|+.+.+++..... -.-+.|..+|++ +
T Consensus       466 G~l~AiD~~TG~i~W~~~~~~-p~~~g~lstagglVF~Gt~dg~l~A~Da~TGe~LW~~~~~~~~~~~P~ty~~~G~qYv  544 (582)
T d1flga_         466 GSLRAMDPVSGKVVWEHKEHL-PLWAGVLATAGNLVFTGTGDGYFKAFDAKSGKELWKFQTGSGIVSPPITWEQDGEQYL  544 (582)
T ss_dssp             EEEEEECTTTCCEEEEEEESS-CCCSCCEEETTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEEEE
T ss_pred             CeEEEEcCCCCcEEeecCCCC-CCccceeEEcCCeEEEeCCCCeEEEEECCCCcEeEEEECCCCccccCEEEEECCEEEE
Confidence            468889999998887765332 2222223346788889999999999999999999998653321 122667778864 4


Q ss_pred             EE
Q 042146          158 VT  159 (262)
Q Consensus       158 ~~  159 (262)
                      ++
T Consensus       545 ~i  546 (582)
T d1flga_         545 GV  546 (582)
T ss_dssp             EE
T ss_pred             EE
Confidence            43

>d1qfma1 b.69.7.1 (A:1-430) Prolyl oligopeptidase, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Peptidase/esterase 'gauge' domain
family: Prolyl oligopeptidase, N-terminal domain
domain: Prolyl oligopeptidase, N-terminal domain
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=95.53  E-value=0.33  Score=36.82  Aligned_cols=79  Identities=13%  Similarity=0.258  Sum_probs=41.1

Q ss_pred             eEEEEecCCCccceecccCCcceEEEEEeCCCCEEEeecC----------------CCeEEEEECCCCee--eeeeecCC
Q 042146           81 TIRLWDVPTATSLKTLIGHTNYVFCINFNPQSNRIVSDTF----------------NETIRIWDIKTGKC--LKVLPAHS  142 (262)
Q Consensus        81 ~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~----------------dg~i~vwd~~~~~~--~~~~~~~~  142 (262)
                      .|+++|+.+++.+..... ......++|.++++.|+-...                ...|..+.+.+...  ...+....
T Consensus       152 ~l~v~Dl~tg~~~~~~i~-~~~~~~~~W~~D~~~~~Y~~~~~~~~~~~~~~~~~~~~~~v~~h~lgt~~~~d~~v~~e~d  230 (430)
T d1qfma1         152 TIKFMKVDGAKELPDVLE-RVKFSCMAWTHDGKGMFYNAYPQQDGKSDGTETSTNLHQKLYYHVLGTDQSEDILCAEFPD  230 (430)
T ss_dssp             EEEEEETTTTEEEEEEEE-EECSCCEEECTTSSEEEEEECCCCSSCCSSSCCCCCCCCEEEEEETTSCGGGCEEEECCTT
T ss_pred             eeEEeccCcceecccccc-cccccceEEcCCCCEEEEEEeccccCcccccccccCCcceEEEEECCCCcccccccccccc
Confidence            466667777765432111 111245778888876653221                12577777665432  22222222


Q ss_pred             --CCeeeEEEccCCCEEEEE
Q 042146          143 --DPVTAIDFNRDGTMIVTS  160 (262)
Q Consensus       143 --~~v~~~~~~~~~~~l~~~  160 (262)
                        ..+..+..++++++++..
T Consensus       231 ~~~~~~~~~~s~d~~~l~i~  250 (430)
T d1qfma1         231 EPKWMGGAELSDDGRYVLLS  250 (430)
T ss_dssp             CTTCEEEEEECTTSCEEEEE
T ss_pred             CCceEEeeeccCCcceeeEE
Confidence              235566677888876543

>d1k3ia3 b.69.1.1 (A:151-537) Galactose oxidase, central domain {Fungi (Fusarium sp.) [TaxId: 29916]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Galactose oxidase, central domain
family: Galactose oxidase, central domain
domain: Galactose oxidase, central domain
species: Fungi (Fusarium sp.) [TaxId: 29916]

Probab=95.42  E-value=0.1  Score=38.85  Aligned_cols=91  Identities=18%  Similarity=0.285  Sum_probs=61.0

Q ss_pred             EEEeCCCCEEEeecCC-----C------eEEEEECCCCeeee--ee-ecCCCCeeeEEEccCCCEEEEEeCC-CeEEEEe
Q 042146          106 INFNPQSNRIVSDTFN-----E------TIRIWDIKTGKCLK--VL-PAHSDPVTAIDFNRDGTMIVTSSYD-GLYRILD  170 (262)
Q Consensus       106 ~~~~~~~~~l~~~~~d-----g------~i~vwd~~~~~~~~--~~-~~~~~~v~~~~~~~~~~~l~~~~~d-g~i~~~d  170 (262)
                      .....+++.++.|+.+     +      .+.+||+.+++-..  .. ..+.......++.+++++++.|+.+ ..+.+||
T Consensus        25 a~~~~~gkv~v~GG~~~~~~~~~~~~~~~~~~yd~~t~~w~~~~~~~~~~~~~~~~~~~~~~g~i~v~Gg~~~~~~~~yd  104 (387)
T d1k3ia3          25 AIEPTSGRVLMWSSYRNDAFGGSPGGITLTSSWDPSTGIVSDRTVTVTKHDMFCPGISMDGNGQIVVTGGNDAKKTSLYD  104 (387)
T ss_dssp             EEETTTTEEEEEEECCCTTTCSCCCSEEEEEEECTTTCCBCCCEEEECSCCCSSCEEEECTTSCEEEECSSSTTCEEEEE
T ss_pred             EEEeeCCEEEEEEeecCcccCCCCCceeEEEEEECCCCcEeecCCCCCCcccceeEEEEecCCcEEEeecCCCcceeEec
Confidence            3344477877776642     1      37789998775322  11 2233334566788999999988755 5899999


Q ss_pred             CCC---------------------CCccEEEEEcCC------CeEEEEecCCC
Q 042146          171 AST---------------------PNGKFILVGTLD------NTLRLWNYSTR  196 (262)
Q Consensus       171 ~~~---------------------~~~~~l~~~~~d------g~i~i~d~~~~  196 (262)
                      ...                     .+++.++.|+.+      ..+.+||..+.
T Consensus       105 ~~~~~w~~~~~~~~~r~~~~~~~~~dG~v~v~GG~~~~~~~~~~v~~yd~~~~  157 (387)
T d1k3ia3         105 SSSDSWIPGPDMQVARGYQSSATMSDGRVFTIGGSWSGGVFEKNGEVYSPSSK  157 (387)
T ss_dssp             GGGTEEEECCCCSSCCSSCEEEECTTSCEEEECCCCCSSSCCCCEEEEETTTT
T ss_pred             CccCcccccccccccccccceeeecCCceeeeccccccccccceeeeecCCCC
Confidence            765                     578888888643      35888998764

>d1flga_ b.70.1.1 (A:) Ethanol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Ethanol dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=94.87  E-value=0.68  Score=36.68  Aligned_cols=31  Identities=19%  Similarity=0.336  Sum_probs=27.0

Q ss_pred             CccEEEEEcCCCeEEEEecCCCceeeEEecc
Q 042146          175 NGKFILVGTLDNTLRLWNYSTRKILKTYSGY  205 (262)
Q Consensus       175 ~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~  205 (262)
                      .+..+++|+.||.++-+|.++|+.+.+++..
T Consensus       496 agglVF~Gt~dg~l~A~Da~TGe~LW~~~~~  526 (582)
T d1flga_         496 AGNLVFTGTGDGYFKAFDAKSGKELWKFQTG  526 (582)
T ss_dssp             TTTEEEEECTTSEEEEEETTTCCEEEEEECS
T ss_pred             cCCeEEEeCCCCeEEEEECCCCcEeEEEECC
Confidence            4667888999999999999999999988753

>d1utca2 b.69.6.1 (A:4-330) Clathrin heavy-chain terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Clathrin heavy-chain terminal domain
family: Clathrin heavy-chain terminal domain
domain: Clathrin heavy-chain terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=94.50  E-value=0.53  Score=33.72  Aligned_cols=109  Identities=15%  Similarity=0.185  Sum_probs=69.1

Q ss_pred             eEEEEecCCCccceecccCCcceEEEEEeCCCCEEEeecCCCeEEEEECCCCeeeeeeecCCCCeeeEEEccCCCEEEEE
Q 042146           81 TIRLWDVPTATSLKTLIGHTNYVFCINFNPQSNRIVSDTFNETIRIWDIKTGKCLKVLPAHSDPVTAIDFNRDGTMIVTS  160 (262)
Q Consensus        81 ~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~  160 (262)
                      .+.+.|+.+...+....   -...+.-.+|..+.++.-+ ..++.++|+++.+.+..+.- ..+|.-=.|-.+ +.|+..
T Consensus        46 ~VvIidl~n~~~~~Rrp---i~AdsAIMhP~~~IiALra-g~~LQiFnletK~klks~~~-~e~VvfWkWis~-~~L~lV  119 (327)
T d1utca2          46 QVVIIDMNDPSNPIRRP---ISADSAIMNPASKVIALKA-GKTLQIFNIEMKSKMKAHTM-TDDVTFWKWISL-NTVALV  119 (327)
T ss_dssp             EEEEEETTSTTSCEEEE---CCCSEEEECSSSSEEEEEE-TTEEEEEETTTTEEEEEEEC-SSCCCEEEESSS-SEEEEE
T ss_pred             eEEEEECCCCCcceecc---cchhhhhcCCCCcEEEEec-CCeEEEEehhHhhhhceEEc-CCCcEEEEecCC-CEEEEE
Confidence            57777887655432211   1122455789888887655 45899999999988887764 456666666543 344433


Q ss_pred             eCCCeEEEEeCCC-------------------------CCccEEEEEc-------CCCeEEEEecCCC
Q 042146          161 SYDGLYRILDAST-------------------------PNGKFILVGT-------LDNTLRLWNYSTR  196 (262)
Q Consensus       161 ~~dg~i~~~d~~~-------------------------~~~~~l~~~~-------~dg~i~i~d~~~~  196 (262)
                      + +..|+-|++..                         ++.++++..+       -.|.+.+|..+.+
T Consensus       120 T-~taVYHW~~~g~s~P~k~fdR~~~L~~~QIInY~~d~~~kW~~l~GI~~~~~~i~G~mQLYS~er~  186 (327)
T d1utca2         120 T-DNAVYHWSMEGESQPVKMFDRHSSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRK  186 (327)
T ss_dssp             C-SSEEEEEESSSSCCCEEEEECCGGGTTCEEEEEEECTTSCEEEEEEEEEETTEEEEEEEEEETTTT
T ss_pred             c-CCceEEEcccCCCCchhhhhhcccccCceEEEEEECCCCCEEEEEeEecCCCceeEEEEEEEeccC
Confidence            3 45688888754                         5566655432       2267889988743

>d1w6sa_ b.70.1.1 (A:) Methanol dehydrogenase, heavy chain {Methylobacterium extorquens [TaxId: 408]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Methanol dehydrogenase, heavy chain
species: Methylobacterium extorquens [TaxId: 408]

Probab=94.27  E-value=0.27  Score=39.18  Aligned_cols=76  Identities=14%  Similarity=0.144  Sum_probs=51.6

Q ss_pred             eeEEEEecCCCccceecccCCcceEEEEEeCCCCEEEeecCCCeEEEEECCCCeeeeeeecCCC-CeeeEEEccCCCE
Q 042146           80 ATIRLWDVPTATSLKTLIGHTNYVFCINFNPQSNRIVSDTFNETIRIWDIKTGKCLKVLPAHSD-PVTAIDFNRDGTM  156 (262)
Q Consensus        80 ~~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~-~v~~~~~~~~~~~  156 (262)
                      +.|.-||..+++.+..... ..+...-.+...+.+++.|+.||.++.+|.++++.+.++..... .-.=+.|..+|++
T Consensus       453 G~l~A~D~~TG~~~W~~~~-~~~~~gg~lsTagglVF~G~~Dg~l~A~Da~TGe~LW~~~~~~~~~a~P~tY~~dGkQ  529 (596)
T d1w6sa_         453 GQIKAYNAITGDYKWEKME-RFAVWGGTMATAGDLVFYGTLDGYLKARDSDTGDLLWKFKIPSGAIGYPMTYTHKGTQ  529 (596)
T ss_dssp             EEEEEECTTTCCEEEEEEE-SSCCCSBCEEETTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEE
T ss_pred             ceEEEEeCCCCceecccCC-CCCCccceeEecCCEEEEECCCCeEEEEECCCCcEeeEEECCCCcccCCeEEEECCEE
Confidence            4799999999988765432 22222222233578888999999999999999999999864322 1122455567764

>d1crua_ b.68.2.1 (A:) Soluble quinoprotein glucose dehydrogenase {Acinetobacter calcoaceticus [TaxId: 471]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Soluble quinoprotein glucose dehydrogenase
family: Soluble quinoprotein glucose dehydrogenase
domain: Soluble quinoprotein glucose dehydrogenase
species: Acinetobacter calcoaceticus [TaxId: 471]

Probab=93.78  E-value=0.44  Score=36.49  Aligned_cols=53  Identities=15%  Similarity=0.270  Sum_probs=38.5

Q ss_pred             cceEEEEEeCCCCEEEeecCCCeEEEEECCCCeeeee--ee------cCCCCeeeEEEccC
Q 042146          101 NYVFCINFNPQSNRIVSDTFNETIRIWDIKTGKCLKV--LP------AHSDPVTAIDFNRD  153 (262)
Q Consensus       101 ~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~--~~------~~~~~v~~~~~~~~  153 (262)
                      ....+|+|.|+++++++--..|.|++++..+++....  +.      .-......|+++|+
T Consensus        27 ~~P~~la~~pdg~llVter~~G~i~~v~~~~g~~~~i~~~~~~~~~~~ge~GLLgia~~Pd   87 (450)
T d1crua_          27 NKPHALLWGPDNQIWLTERATGKILRVNPESGSVKTVFQVPEIVNDADGQNGLLGFAFHPD   87 (450)
T ss_dssp             SSEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCCTTSSCSEEEEEECTT
T ss_pred             CCceEEEEeCCCeEEEEEecCCEEEEEECCCCcEeecccCCccccccCCCCceeeEEeCCC
Confidence            4567999999999988876679999999877654221  11      12356788999995

>d1xipa_ b.69.14.1 (A:) Nucleoporin NUP159 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nucleoporin domain
family: Nucleoporin domain
domain: Nucleoporin NUP159
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=93.00  E-value=1.2  Score=33.00  Aligned_cols=126  Identities=9%  Similarity=0.001  Sum_probs=77.7

Q ss_pred             cceEEEEEeCCCCEEEeecCCCeEEEEECCCC---------eeeeeeecCCCCeeeEEEccCCCEEEEEeCCCeEEEEeC
Q 042146          101 NYVFCINFNPQSNRIVSDTFNETIRIWDIKTG---------KCLKVLPAHSDPVTAIDFNRDGTMIVTSSYDGLYRILDA  171 (262)
Q Consensus       101 ~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~---------~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~d~  171 (262)
                      ...+-+++++...++++|+.++ ++|..+..-         ......+..-..|..++|+-+  .|+.. .++.+..++.
T Consensus        37 ~~~~LLAVsn~~GLl~aa~~~~-l~V~~t~~l~~~~~~~~~~~~~~~~~~ip~v~~vafs~d--~l~v~-~~~~l~~~~~  112 (381)
T d1xipa_          37 ASLQNLDISNSKSLFVAASGSK-AVVGELQLLRDHITSDSTPLTFKWEKEIPDVIFVCFHGD--QVLVS-TRNALYSLDL  112 (381)
T ss_dssp             SCCBCEEEETTTTEEEEEETTE-EEEEEHHHHHHHHHSSSCCCCCSEEEECTTEEEEEEETT--EEEEE-ESSEEEEEES
T ss_pred             cccceEEEeCCCCEEEEECCCE-EEEEEHHHHHHHhhccCCCCcceeccCCCCeEEEEeeCC--EEEEE-eCCCEEEEEe
Confidence            4466788998888888888775 566654210         000111111235888999743  45554 4556777776


Q ss_pred             CC------------------CCccEEEEEcCCCeEEEEecCCCceeeEEeccCCceeEEEEEEecCCCeeEEccccceEE
Q 042146          172 ST------------------PNGKFILVGTLDNTLRLWNYSTRKILKTYSGYTNSKYCISSTFSVTNGKYIVSHRDPVIS  233 (262)
Q Consensus       172 ~~------------------~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~  233 (262)
                      ..                  +....++....++.+.++++..++......+    +.+.    .         -.+.+.+
T Consensus       113 ~~l~~~~~~~~~~~~~~~~~~~p~~~~l~~~~~~~~~~~l~~~~~~~~~~~----v~~~----~---------~~~~~~~  175 (381)
T d1xipa_         113 EELSEFRTVTSFEKPVFQLKNVNNTLVILNSVNDLSALDLRTKSTKQLAQN----VTSF----D---------VTNSQLA  175 (381)
T ss_dssp             SSTTCEEEEEECSSCEEEEEECSSEEEEEETTSEEEEEETTTCCEEEEEES----EEEE----E---------ECSSEEE
T ss_pred             eccccccccccccccccceecCCceeEEEecCCCEEEEEeccCccccccCC----cceE----E---------ecCCceE
Confidence            65                  3445566677788888888887754332221    1110    0         3467899


Q ss_pred             EEEcCCCCeEEEee
Q 042146          234 VASHPAKNIIASGA  247 (262)
Q Consensus       234 ~~~~p~~~~l~~~~  247 (262)
                      ++|++.+..++++.
T Consensus       176 v~ws~kgkq~v~~~  189 (381)
T d1xipa_         176 VLLKDRSFQSFAWR  189 (381)
T ss_dssp             EEETTSCEEEEEEE
T ss_pred             EEEeCCcEEEEEeC
Confidence            99999999888875

>d1npea_ b.68.5.1 (A:) Nidogen {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: YWTD domain
family: YWTD domain
domain: Nidogen
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=92.93  E-value=0.97  Score=31.60  Aligned_cols=73  Identities=8%  Similarity=-0.036  Sum_probs=45.0

Q ss_pred             cceEEEEEeCCCCEEEeec---CCCeEEEEECCCCeeeeeeecCCCCeeeEEEccCCCEEEEE-eCCCeEEEEeCCC
Q 042146          101 NYVFCINFNPQSNRIVSDT---FNETIRIWDIKTGKCLKVLPAHSDPVTAIDFNRDGTMIVTS-SYDGLYRILDAST  173 (262)
Q Consensus       101 ~~v~~~~~~~~~~~l~~~~---~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~~dg~i~~~d~~~  173 (262)
                      .....++++|...+++-..   ....|..-++............-.....+++.+.++.|+.+ ...+.|...++..
T Consensus       122 ~~p~~l~vdp~~g~ly~t~~~~~~~~I~r~~~dG~~~~~i~~~~~~~P~glaiD~~~~~lYw~d~~~~~I~~~~~~g  198 (263)
T d1npea_         122 VNPRGIVTDPVRGNLYWTDWNRDNPKIETSHMDGTNRRILAQDNLGLPNGLTFDAFSSQLCWVDAGTHRAECLNPAQ  198 (263)
T ss_dssp             SSEEEEEEETTTTEEEEEECCSSSCEEEEEETTSCCCEEEECTTCSCEEEEEEETTTTEEEEEETTTTEEEEEETTE
T ss_pred             cCCcEEEEecccCcEEEeecCCCCcEEEEecCCCCCceeeeeecccccceEEEeecCcEEEEEeCCCCEEEEEECCC
Confidence            5578999999777665332   22345555665433333232233456899998877766555 4677888888765

>d1qfma1 b.69.7.1 (A:1-430) Prolyl oligopeptidase, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Peptidase/esterase 'gauge' domain
family: Prolyl oligopeptidase, N-terminal domain
domain: Prolyl oligopeptidase, N-terminal domain
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=92.87  E-value=1.4  Score=33.23  Aligned_cols=59  Identities=12%  Similarity=0.120  Sum_probs=39.7

Q ss_pred             ceEEEEEeCCCCEEEe-----ecCCCeEEEEECCCCeeeeeeecCCCCeeeEEEccCCCEEEEEe
Q 042146          102 YVFCINFNPQSNRIVS-----DTFNETIRIWDIKTGKCLKVLPAHSDPVTAIDFNRDGTMIVTSS  161 (262)
Q Consensus       102 ~v~~~~~~~~~~~l~~-----~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~  161 (262)
                      .+...+++|++++++.     |+....|+++|+.+++.+...-. ......++|.++++.|+-..
T Consensus       126 ~~~~~~~Spd~~~la~s~d~~G~e~~~l~v~Dl~tg~~~~~~i~-~~~~~~~~W~~D~~~~~Y~~  189 (430)
T d1qfma1         126 ALRGYAFSEDGEYFAYGLSASGSDWVTIKFMKVDGAKELPDVLE-RVKFSCMAWTHDGKGMFYNA  189 (430)
T ss_dssp             EEEEEEECTTSSEEEEEEEETTCSCEEEEEEETTTTEEEEEEEE-EECSCCEEECTTSSEEEEEE
T ss_pred             eecceEecCCCCEEEEEeccccCchheeEEeccCcceecccccc-cccccceEEcCCCCEEEEEE
Confidence            3456678999998873     23334799999999987643211 12235788999988776544

>d1v04a_ b.68.6.2 (A:) Serum paraoxonase/arylesterase 1, PON1 {Rabit (Oryctolagus cuniculus) [TaxId: 9986]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: Serum paraoxonase/arylesterase 1, PON1
domain: Serum paraoxonase/arylesterase 1, PON1
species: Rabit (Oryctolagus cuniculus) [TaxId: 9986]

Probab=92.45  E-value=1.4  Score=32.17  Aligned_cols=146  Identities=12%  Similarity=0.078  Sum_probs=75.8

Q ss_pred             ceEEEEEccCCCeEEEecC------------CCeEEEeecCCCCCCCC----C-CCCCCccccCCcccc-----------
Q 042146           25 AVSYVKFSHDGRLLTSSSA------------EKTLLTYSLSSISNFDS----T-PPSPLQKFTGHEQGI-----------   76 (262)
Q Consensus        25 ~v~~~~~~~~~~~l~s~~~------------d~~i~iw~~~~~~~~~~----~-~~~~~~~~~~~~~~v-----------   76 (262)
                      .--.|+..|+|..+++++.            .|.|.++|+.+......    . .......+..|.-.+           
T Consensus        36 G~EDi~~~~dg~~~issg~~~~~~~~~~~~~~G~i~~~dl~~~~~~~~~l~~~~~~~~~~~f~PhGi~l~~~~dg~~~L~  115 (340)
T d1v04a_          36 GSEDLEILPNGLAFISSGLKYPGIMSFDPDKSGKILLMDLNEKEPAVSELEIIGNTLDISSFNPHGISTFIDDDNTVYLL  115 (340)
T ss_dssp             CCCEEEECTTSEEEEEECCCC--------CCCCEEEEEETTSSSCCEEECEEECSSSCGGGCCEEEEEEEECTTCCEEEE
T ss_pred             CcceEEECCCCcEEEEecCccCCCCCCCCCCCCeEEEEecCCCCCcceEEEecCCCCCCcceeccceeEEEcCCCcEEEE
Confidence            4457888999988777643            48899999865322110    0 000011122221111           


Q ss_pred             -----ccceeEEEEecCCCccce----ecc-cCCcceEEEEEeCCCCEEEeec-----------------CCCeEEEEEC
Q 042146           77 -----SDLATIRLWDVPTATSLK----TLI-GHTNYVFCINFNPQSNRIVSDT-----------------FNETIRIWDI  129 (262)
Q Consensus        77 -----~~~~~i~v~d~~~~~~~~----~~~-~~~~~v~~~~~~~~~~~l~~~~-----------------~dg~i~vwd~  129 (262)
                           .....|.++++.......    .+. ......+.+.+..++.++++-.                 ..+.+.-||.
T Consensus       116 vvnH~~~~~~ieif~~~~~~~~l~~~~~v~~~~~~~pNDv~~~~~g~fy~Tnd~~~~~~~~~~~e~~~~~~~g~v~~~~~  195 (340)
T d1v04a_         116 VVNHPGSSSTVEVFKFQEEEKSLLHLKTIRHKLLPSVNDIVAVGPEHFYATNDHYFIDPYLKSWEMHLGLAWSFVTYYSP  195 (340)
T ss_dssp             EEECSTTCCEEEEEEEETTTTEEEEEEEECCTTCSSEEEEEEEETTEEEEEESCSCCSHHHHHHHHHTTCCCEEEEEECS
T ss_pred             EEeccCCCceeEEEEEeCCCCeEEEEeecCCccccCccceEEecCCCEEEecCccCcChhhhhhhHhhcCCceeEEEEcC
Confidence                 011145555554332211    111 1224578888888888888721                 1233444443


Q ss_pred             CCCeeeeeeecCCCCeeeEEEccCCCEEEEEe-CCCeEEEEeCCC
Q 042146          130 KTGKCLKVLPAHSDPVTAIDFNRDGTMIVTSS-YDGLYRILDAST  173 (262)
Q Consensus       130 ~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~dg~i~~~d~~~  173 (262)
                        ++...... .-...+.++++|++++|+++. ..++|+.|++..
T Consensus       196 --~~~~~~~~-~l~~pNGI~~s~d~~~lyVa~t~~~~i~~y~~~~  237 (340)
T d1v04a_         196 --NDVRVVAE-GFDFANGINISPDGKYVYIAELLAHKIHVYEKHA  237 (340)
T ss_dssp             --SCEEEEEE-EESSEEEEEECTTSSEEEEEEGGGTEEEEEEECT
T ss_pred             --CceEEEcC-CCCccceeEECCCCCEEEEEeCCCCeEEEEEeCC
Confidence              33222222 234568899999988765554 556677776653

>d1h6la_ b.68.3.1 (A:) Thermostable phytase (3-phytase) {Bacillus amyloliquefaciens [TaxId: 1390]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Thermostable phytase (3-phytase)
family: Thermostable phytase (3-phytase)
domain: Thermostable phytase (3-phytase)
species: Bacillus amyloliquefaciens [TaxId: 1390]

Probab=92.45  E-value=1.4  Score=32.29  Aligned_cols=39  Identities=15%  Similarity=0.485  Sum_probs=26.2

Q ss_pred             CCCCEEEeecCCCeEEEEECCCCeeeeeeecCCCCeeeEEEc
Q 042146          110 PQSNRIVSDTFNETIRIWDIKTGKCLKVLPAHSDPVTAIDFN  151 (262)
Q Consensus       110 ~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~  151 (262)
                      |+..+++.....+-|++||+. |+.+..+.  .+.++.+..-
T Consensus        38 p~~SlI~gTdK~~Gl~vYdL~-G~~l~~~~--~Gr~NNVDvr   76 (353)
T d1h6la_          38 PQNSKLITTNKKSGLAVYSLE-GKMLHSYH--TGKLNNVDIR   76 (353)
T ss_dssp             GGGCEEEEEETTSCCEEEETT-CCEEEECC--SSCEEEEEEE
T ss_pred             cCccEEEEEcCcCCEEEEcCC-CcEEEecc--cCCcCccccc
Confidence            345677776777679999985 77776654  3556665544

>d2hu7a1 b.69.7.2 (A:9-321) Acylamino-acid-releasing enzyme, N-terminal donain {Aeropyrum pernix [TaxId: 56636]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Peptidase/esterase 'gauge' domain
family: Acylamino-acid-releasing enzyme, N-terminal donain
domain: Acylamino-acid-releasing enzyme, N-terminal donain
species: Aeropyrum pernix [TaxId: 56636]

Probab=91.37  E-value=1.4  Score=29.86  Aligned_cols=97  Identities=11%  Similarity=0.139  Sum_probs=52.4

Q ss_pred             CCCeEEEecCCCeEEEeecCCCCCCCCCCCCCCccccCCccccccceeEEEEecCCCccc--------------eecccC
Q 042146           34 DGRLLTSSSAEKTLLTYSLSSISNFDSTPPSPLQKFTGHEQGISDLATIRLWDVPTATSL--------------KTLIGH   99 (262)
Q Consensus        34 ~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~i~v~d~~~~~~~--------------~~~~~~   99 (262)
                      +.++++++...|.+.++-+.+.+...............+. .+.  ..+.+-|+..++..              ..+...
T Consensus        25 ~d~ll~~~~seG~vni~~l~g~~~vkLtkePI~~~~~Pk~-~ld--fi~f~RDV~kGkE~Hai~~~Nlk~~GEE~~i~sp  101 (313)
T d2hu7a1          25 GDKLLVVGFSEGSVNAYLYDGGETVKLNREPINSVLDPHY-GVG--RVILVRDVSKGAEQHALFKVNTSRPGEEQRLEAV  101 (313)
T ss_dssp             TTEEEEEEEETTEEEEEEESSSSCEECCSSCCSEECEECT-TBS--EEEEEEECSTTSCCEEEEEEETTSTTCEEECTTS
T ss_pred             CCcEEEEEeccceEEEEEEeCCEEEEEecccccCcCCCcc-Ccc--eEEEEeehhcCcceeeEEEEccCCCCeeeEecCC
Confidence            4457778878899999887765543222211111111111 000  02333344444333              233333


Q ss_pred             C-cceEEEEEeCCCCEEEeecCCCeEEEEECCCCee
Q 042146          100 T-NYVFCINFNPQSNRIVSDTFNETIRIWDIKTGKC  134 (262)
Q Consensus       100 ~-~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~  134 (262)
                      + -.|.+++.. +.+.+++|+......+|=++.++.
T Consensus       102 k~vRI~S~~yd-dk~vvF~Gased~~~LYviegGkl  136 (313)
T d2hu7a1         102 KPMRILSGVDT-GEAVVFTGATEDRVALYALDGGGL  136 (313)
T ss_dssp             CSBEEEEEEEC-SSCEEEEEECSSCEEEEEEETTEE
T ss_pred             ceEEEEEeeec-CceEEEecccCCceEEEEEeCCce
Confidence            3 456666665 566778888888888888887764

>d1dlpa1 b.78.1.1 (A:1-115) Fetuin-binding protein Scafet precursor {Bluebell (Scilla campanulata) [TaxId: 81759]}

class: All beta proteins
fold: beta-Prism II
superfamily: alpha-D-mannose-specific plant lectins
family: alpha-D-mannose-specific plant lectins
domain: Fetuin-binding protein Scafet precursor
species: Bluebell (Scilla campanulata) [TaxId: 81759]

Probab=87.72  E-value=0.48  Score=28.48  Aligned_cols=77  Identities=13%  Similarity=0.184  Sum_probs=40.7

Q ss_pred             CCEEEeecCCCeEEEEECCCCeeeeeeecCCCCeeeEEEccCCCEEEEEeCCCeEEEEeCCC--CCccEEEEEcCCCeEE
Q 042146          112 SNRIVSDTFNETIRIWDIKTGKCLKVLPAHSDPVTAIDFNRDGTMIVTSSYDGLYRILDAST--PNGKFILVGTLDNTLR  189 (262)
Q Consensus       112 ~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~d~~~--~~~~~l~~~~~dg~i~  189 (262)
                      +.+-+.-..||.+.+|+  .+..+..-..+......+.+.++|++++... ++. .+|...+  +.+.+.+.=..||.+.
T Consensus        26 g~~~l~~q~DGNLvL~~--~~~~vW~s~t~~~~~~~l~l~~dGNLvl~d~-~~~-~vWsS~t~~~~g~y~l~Lq~DGNlv  101 (115)
T d1dlpa1          26 SSFRFTMQSDCNLVLFD--SDVRVWASNTAGATGCRAVLQSDGLLVILTA-QNT-IRWSSGTKGSIGNYVLVLQPDRTVT  101 (115)
T ss_dssp             TTEEEEECTTSCEEEEE--SSSEEECCCCCSCSCCBCCBCSSSCBCCBCT-TTC-CSCCCCCCCCSSCCEEEECSSSCEE
T ss_pred             CCEEEEECCCCeEEEEc--CCeeEEEcccCCCCceEEEEeccCCEEEEcc-CCC-EEEEcCCCCCCCCEEEEECCCCcEE
Confidence            34434444455555554  2233333222334445666777777554433 332 3565443  4566666667788888


Q ss_pred             EEe
Q 042146          190 LWN  192 (262)
Q Consensus       190 i~d  192 (262)
                      ||+
T Consensus       102 lY~  104 (115)
T d1dlpa1         102 IYG  104 (115)
T ss_dssp             EEC
T ss_pred             EeC
Confidence            874

>d1ijqa1 b.68.5.1 (A:377-642) Low density lipoprotein (LDL) receptor {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: YWTD domain
family: YWTD domain
domain: Low density lipoprotein (LDL) receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=86.33  E-value=3.8  Score=28.39  Aligned_cols=75  Identities=15%  Similarity=0.082  Sum_probs=44.5

Q ss_pred             CCcceEEEEEeCCCCEEEee-cCCCeEEEEECCCCe----eeeeeecCCCCeeeEEEccCCCEEEE-EeCCCeEEEEeCC
Q 042146           99 HTNYVFCINFNPQSNRIVSD-TFNETIRIWDIKTGK----CLKVLPAHSDPVTAIDFNRDGTMIVT-SSYDGLYRILDAS  172 (262)
Q Consensus        99 ~~~~v~~~~~~~~~~~l~~~-~~dg~i~vwd~~~~~----~~~~~~~~~~~v~~~~~~~~~~~l~~-~~~dg~i~~~d~~  172 (262)
                      ....+..+.|++..+.++-. ...+.|...++....    ....+......+..+++.+.+..|+. -...+.|.+.++.
T Consensus        28 ~~~~~~~id~d~~~~~lYw~D~~~~~I~~~~l~~~~~~~~~~~~~~~~~~~p~glAvD~~~~~lY~~d~~~~~I~v~~~~  107 (266)
T d1ijqa1          28 NLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTK  107 (266)
T ss_dssp             SCSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETT
T ss_pred             CCCceEEEEEEeCCCEEEEEECCCCEEEEEEecCCCCCcceEEEEeCCCCCcceEEEeeccceEEEEecCCCEEEeEecC
Confidence            34456789999877766544 456677777664321    11222222345678888875554444 4566788888877


Q ss_pred             C
Q 042146          173 T  173 (262)
Q Consensus       173 ~  173 (262)
                      .
T Consensus       108 g  108 (266)
T d1ijqa1         108 G  108 (266)
T ss_dssp             S
T ss_pred             C
Confidence            5

>d1zgka1 b.68.11.1 (A:322-609) Kelch-like ECH-associated protein 1, KEAP1 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Kelch motif
family: Kelch motif
domain: Kelch-like ECH-associated protein 1, KEAP1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=83.13  E-value=5.4  Score=27.45  Aligned_cols=23  Identities=13%  Similarity=0.328  Sum_probs=13.6

Q ss_pred             CCCeEEEeeecCC---CcEEEEeecc
Q 042146          239 AKNIIASGALDND---RTMKIWTQEK  261 (262)
Q Consensus       239 ~~~~l~~~~~d~d---~~i~iw~~~~  261 (262)
                      ++++++.|+.+.+   ..|.+||+.+
T Consensus       242 ~~~l~v~GG~~~~~~~~~v~~yd~~~  267 (288)
T d1zgka1         242 QGRIYVLGGYDGHTFLDSVECYDPDT  267 (288)
T ss_dssp             TTEEEEECCBCSSCBCCEEEEEETTT
T ss_pred             CCEEEEEecCCCCeecceEEEEECCC
Confidence            5778888773221   1266777654