Citrus Sinensis ID: 042183

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------18
Protein Sequence
INFADMNSVSIEIEEASLLDNNGEISQLQIDPNLFKAAAAGNLEPFKDMAREEILEICPSLLLQVNAKGDSRSLLVAAKFGHCDIVSVLIERAKLLQHEDEELESGMIRMMNKEKHTALHEAVFHKIVDVVKILTREDLDYPYSANNYNKTPLCMVAEYEHSSHMVVAILKNCTSVSHR
Secondary Structure (PSIPRED)
ccccccHHHHHHHHHHHHHHcccccccccccHHHHHHHHcccHHHHHHHHHHHHHHHcHHHHHHHHcccccHHHHHHHHHccHHHHHHHHHHHHHccccHHHHHHHHHHHcccccccHHHHHHHccHHHHHHHHHHcccccccccccccccHHHHHHHHccHHHHHHHHHHcccccccc
Secondary Structure Prediction (SSPRO)
ccccccccEEEEEEEHHHcccccccccccccHHHHHHHHccccHHHHHHHHHHHHHHcHHHHHcccccccccHHHHHHHcccHHHHHHHHHHHHcccccHHHHcHHHHHEcccccccHHHHHHHHccHHHHHHHHHccccccccccccccccHHHHHHcccHHHHHHHHHccccccccc
Coil and Loop (DISEMBL)
infadmnsvSIEIEEAslldnngeisqlqidpnlfkaaaagnlepfkDMAREEILEICPSLLlqvnakgdsRSLLVAAKFGHCDIVSVLIERAKLLQHEDEELESGMIRMMNKEKHTALHEAVFHKIVDVVKILTredldypysannynktplCMVAEYEHSSHMVVAILKnctsvshr
Flexible Loop (DISEMBL)
infadmnsvSIEIEEASLLDNNGEISQLQIDPNLFKAAAAGNLEPFKDMAREEILEICPSLLLQVNAKGDSRSLLVAAKFGHCDIVSVLIERAKLLQHEDEELESGMIRMMNKEKHTALHEAVFHKIVDVVKILTREDLDYPYSANNYNKTPLCMVAEYEHSSHMVVAILKnctsvshr
Low Complexity Region (SEG)
INFADMNSVSIEIEEASLLDNNGEISQLQIDPNLFKAAAAGNLEPFKDMAREEILEICPSLLLQVNAKGDSRSLLVAAKFGHCDIVSVLIERAKLLQHEDEELESGMIRMMNKEKHTALHEAVFHKIVDVVKILTREDLDYPYSANNYNKTPLCMVAEYEHSSHMVVAILKNCTSVSHR
Disordered region (IsUnstruct)
************************ISQLQIDPNLFKAAAAGNLEPFKDMAREEILEICPSLLLQVNAKGDSRSLLVAAKFGHCDIVSVLIERAKLLQH*********I*M***EKHTALHEAVFHKIVDVVKILTREDLDYPYSANNYNKTPLCMVAEYEHSSHMVVAILKNCT*****
Disordered Region (DISOPRED)
*NFADMNSVSIEIE**************QIDPNLFKAAAAGNLEPFKDMAREEILEICPSLLLQVNAKGDSRSLLVAAKFGHCDIVSVLIERAKLLQH**EELESGMIRMMNKEKHTALHEAVFHKIVDVVKILTREDLDYPYSANNYNKTPLCMVAEYEHSSHMVVAILKNCT*****
Disordered Region (DISEMBL)
INFADMNSVSIEIEEASLLDNNGEISQLQIDPNLFKAAAAGNLEPFKDMAREEILEICPSLLLQVNAKGDSRSLLVAAKFGHCDIVSVLIERAKLLQHEDEELESGMIRMMNKEKHTALHEAVFHKIVDVVKILTREDLDYPYSANNYNKTPLCMVAEYEHSSHMVVAILKNCTSVSHR
Disordered Region (DISPRO)
INFADMNSVSIEIEEASLLDNNGEISQLQIDPNLFKAAAAGNLEPFKDMAREEILEICPSLLLQVNAKGDSRSLLVAAKFGHCDIVSVLIERAKLLQHEDEELESGMIRMMNKEKHTALHEAVFHKIVDVVKILTREDLDYPYSANNYNKTPLCMVAEYEHSSHMVVAILKNCT*****
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiii
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
INFADMNSVSIEIEEASLLDNNGEISQLQIDPNLFKAAAAGNLEPFKDMAREEILEICPSLLLQVNAKGDSRSLLVAAKFGHCDIVSVLIERAKLLQHEDEELESGMIRMMNKEKHTALHEAVFHKIVDVVKILTREDLDYPYSANNYNKTPLCMVAEYEHSSHMVVAILKNCTSVSHR
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	179	2.2.26 [Sep-21-2011]
Q6AWW5	524	Ankyrin repeat-containing	no	no	0.474	0.162	0.329	0.0001

>sp|Q6AWW5|Y5262_ARATH Ankyrin repeat-containing protein At5g02620 OS=Arabidopsis thaliana GN=At5g02620 PE=1 SV=1

 Score = 46.2 bits (108), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 32/97 (32%), Positives = 51/97 (52%), Gaps = 12/97 (12%)

Query: 77  AAKFGHCDIVSVLIERAKLLQHEDEELESGMIRMMNKEKHTALHEAVFHKIVDVVKILTR 136
           AA+ GH  IV  LIE+           ++GM+  ++K+  TALH AV  +  ++V +L  
Sbjct: 166 AARNGHTVIVKKLIEK-----------KAGMVTRVDKKGQTALHMAVKGQNTEIVDVLME 214

Query: 137 EDLDYPYSANNYNKTPLCMVAEYEHSSHMVVAILKNC 173
            D     SA+N   TPL  +A  ++ + +V  +LK C
Sbjct: 215 ADGSLINSADNKGNTPL-HIAVRKNRAEIVQTVLKYC 250

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	179
224127098	399	predicted protein [Populus trichocarpa]	0.810	0.363	0.397	8e-24
224127081	227	predicted protein [Populus trichocarpa]	0.810	0.638	0.397	1e-23
224127104	405	predicted protein [Populus trichocarpa]	0.810	0.358	0.397	1e-23
255585399	575	ankyrin repeat-containing protein, putat	0.821	0.255	0.370	3e-21
224127093	281	predicted protein [Populus trichocarpa]	0.826	0.526	0.389	5e-21
224157601	254	predicted protein [Populus trichocarpa]	0.849	0.598	0.365	1e-20
224127089	217	predicted protein [Populus trichocarpa]	0.810	0.668	0.380	4e-20
224127079	394	predicted protein [Populus trichocarpa]	0.810	0.368	0.364	5e-20
224127096	219	predicted protein [Populus trichocarpa]	0.810	0.662	0.371	2e-19
224127106	575	predicted protein [Populus trichocarpa]	0.810	0.252	0.352	2e-19

>gi|224127098|ref|XP_002329394.1| predicted protein [Populus trichocarpa] gi|222870444|gb|EEF07575.1| predicted protein [Populus trichocarpa]

 Score =  115 bits (288), Expect = 8e-24,   Method: Compositional matrix adjust.
 Identities = 76/191 (39%), Positives = 104/191 (54%), Gaps = 46/191 (24%)

Query: 30  IDPNLFKAAAAGNLEPFK-----------------------DMAREE--------ILEIC 58
           +DP LFKAAA G+++PF+                       + +RE         ILE+C
Sbjct: 7   MDPVLFKAAAEGDIDPFEKYQTCLDQLLTPDENTILHVYLGNQSREPELTDFVVIILEMC 66

Query: 59  PSLLLQVNAKGDSRSLLVAAKFGHCDIVSVLIERAKLLQHEDEELESG------MIRMMN 112
           P LL Q N KG+   L +AA +GH ++V VLI+RAK L  + E   SG      M+RM N
Sbjct: 67  PPLLFQANKKGEI-PLHLAAAYGHSNVVKVLIDRAKALPTDSE---SGVTEAKKMLRMTN 122

Query: 113 KEKHTALHEAVFHKIVDVVKILTREDLDYPYSANNYNKTPLCMVAE-----YEHSSHMVV 167
           +E+ TALHEA  H+   VV+ILT+ED ++PYSAN + +TPL + A       E    +V 
Sbjct: 123 EEQDTALHEAARHRRSHVVEILTKEDPEFPYSANVHGETPLYIAASIITRWREEGGKVVD 182

Query: 168 AILKNCTSVSH 178
            IL NC SV +
Sbjct: 183 GILGNCISVDY 193

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224127081|ref|XP_002329387.1| predicted protein [Populus trichocarpa] gi|222870437|gb|EEF07568.1| predicted protein [Populus trichocarpa]

 Score =  115 bits (287), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 76/191 (39%), Positives = 104/191 (54%), Gaps = 46/191 (24%)

Query: 30  IDPNLFKAAAAGNLEPFK-----------------------DMAREE--------ILEIC 58
           +DP LFKAAA G+++PF+                       + +RE         ILE+C
Sbjct: 13  MDPVLFKAAAEGDIDPFEKYQTCLDQLLTPDENTILHVYLGNQSREPELTDFVVIILEMC 72

Query: 59  PSLLLQVNAKGDSRSLLVAAKFGHCDIVSVLIERAKLLQHEDEELESG------MIRMMN 112
           P LL Q N KG+   L +AA +GH ++V VLI+RAK L  + E   SG      M+RM N
Sbjct: 73  PPLLFQANKKGEI-PLHLAAAYGHSNVVKVLIDRAKALPTDSE---SGVTEAKKMLRMTN 128

Query: 113 KEKHTALHEAVFHKIVDVVKILTREDLDYPYSANNYNKTPLCMVAE-----YEHSSHMVV 167
           +E+ TALHEA  H+   VV+ILT+ED ++PYSAN + +TPL + A       E    +V 
Sbjct: 129 EEQDTALHEAARHRRSHVVEILTKEDPEFPYSANVHGETPLYIAASIITRWREERGKVVD 188

Query: 168 AILKNCTSVSH 178
            IL NC SV +
Sbjct: 189 GILGNCISVDY 199

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224127104|ref|XP_002329397.1| predicted protein [Populus trichocarpa] gi|222870447|gb|EEF07578.1| predicted protein [Populus trichocarpa]

 Score =  115 bits (287), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 76/191 (39%), Positives = 104/191 (54%), Gaps = 46/191 (24%)

Query: 30  IDPNLFKAAAAGNLEPFK-----------------------DMAREE--------ILEIC 58
           +DP LFKAAA G+++PF+                       + +RE         ILE+C
Sbjct: 13  MDPVLFKAAAEGDIDPFEKYQTCLDQLLTPDENTILHVYLGNQSREPELTDFVVIILEMC 72

Query: 59  PSLLLQVNAKGDSRSLLVAAKFGHCDIVSVLIERAKLLQHEDEELESG------MIRMMN 112
           P LL Q N KG+   L +AA +GH ++V VLI+RAK L  + E   SG      M+RM N
Sbjct: 73  PPLLFQANKKGEI-PLHLAAAYGHSNVVKVLIDRAKALPTDSE---SGVTEAKKMLRMTN 128

Query: 113 KEKHTALHEAVFHKIVDVVKILTREDLDYPYSANNYNKTPLCMVAE-----YEHSSHMVV 167
           +E+ TALHEA  H+   VV+ILT+ED ++PYSAN + +TPL + A       E    +V 
Sbjct: 129 EEQDTALHEAARHRRSHVVEILTKEDPEFPYSANVHGETPLYIAASIITRWREERGKVVD 188

Query: 168 AILKNCTSVSH 178
            IL NC SV +
Sbjct: 189 GILGNCISVDY 199

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255585399|ref|XP_002533395.1| ankyrin repeat-containing protein, putative [Ricinus communis] gi|223526769|gb|EEF28995.1| ankyrin repeat-containing protein, putative [Ricinus communis]

 Score =  106 bits (265), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 70/189 (37%), Positives = 108/189 (57%), Gaps = 42/189 (22%)

Query: 25  ISQLQIDPNLFKAAAAGNLEPFKDMAR-----------------------------EEIL 55
           I+ + +D  L+KAA  G ++PFK+ A                              +E L
Sbjct: 24  ITYMSLD--LYKAAEDGKIDPFKNFAGPLDLLVTPIKDTILHLNLASPSERSTSFVKEAL 81

Query: 56  EICPSLLLQVNAKGDSRSLLVAAKFGHCDIVSVLIERAKLLQHEDEELESG------MIR 109
           ++CP +LLQ+NA GD+  L +AA++GH DIV +LIE  +  QH+D  LES       M+R
Sbjct: 82  DMCPQILLQINADGDTL-LHIAARYGHLDIVKLLIEHTR-AQHQD--LESAGEAVRQMLR 137

Query: 110 MMNKEKHTALHEAVFHKIVDVVKILTREDLDYPYSANNYNKTPLCMVAEYEHSSHMVVAI 169
           M NK K TALHEA  +   D+V++L  +D D+ +S+N++ +TPL + +E  H   +VV +
Sbjct: 138 MTNKSKETALHEAARNDHPDLVELLIEQDPDFVHSSNDFGETPLYLASERGHLE-VVVIM 196

Query: 170 LKNCTSVSH 178
           LK CTS+++
Sbjct: 197 LKACTSLAY 205

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224127093|ref|XP_002329392.1| predicted protein [Populus trichocarpa] gi|222870442|gb|EEF07573.1| predicted protein [Populus trichocarpa]

 Score =  106 bits (264), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 72/185 (38%), Positives = 101/185 (54%), Gaps = 37/185 (20%)

Query: 30  IDPNLFKAAAAGNLEPFKD-----------------------MARE--------EILEIC 58
           +DP LFKAA AG++ PF++                        +RE        +ILE+C
Sbjct: 5   MDPVLFKAAEAGDIGPFENYQTCLDQLLTPDENTILHVYLGNQSREPEFTDFVDKILEMC 64

Query: 59  PSLLLQVNAKGDSRSLLVAAKFGHCDIVSVLIERAKLLQHEDEELES---GMIRMMNKEK 115
           P LLLQ N KG+   L +AA++GH ++V VLIERA+ L  + E   S    M+RM N E+
Sbjct: 65  PPLLLQANKKGEI-PLHLAARYGHSNVVGVLIERAEALPTDPESGVSEAKKMLRMTNDEQ 123

Query: 116 HTALHEAVFHKIVDVVKILTREDLDYPYSANNYNKTPLCMVAEY--EHSSHMVVAILKNC 173
            TALHEA  +    VV+ILT ED ++ YSAN + +TPL + A    +    ++  IL NC
Sbjct: 124 DTALHEAARNMRSHVVEILTEEDPEFSYSANVHGETPLYIAASSWGQEQEKVIDEILANC 183

Query: 174 TSVSH 178
            SV +
Sbjct: 184 ISVDY 188

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224157601|ref|XP_002337868.1| predicted protein [Populus trichocarpa] gi|222869936|gb|EEF07067.1| predicted protein [Populus trichocarpa]

 Score =  104 bits (260), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 69/189 (36%), Positives = 101/189 (53%), Gaps = 37/189 (19%)

Query: 26  SQLQIDPNLFKAAAAGNLEPFKD--------MAREE-----------------------I 54
           S + +DP L+KAA  GN++PF++        +  +E                       I
Sbjct: 9   SIIYMDPVLYKAAEEGNIDPFENCQTCLDQLLTPDENTILLVYLRNQTTEPKSTDFVYKI 68

Query: 55  LEICPSLLLQVNAKGDSRSLLVAAKFGHCDIVSVLIERAKLLQHEDEELESG---MIRMM 111
           LE CP LL Q N KG++  L +AA++GH ++V +LIERA+ L  + E   +    M+RM 
Sbjct: 69  LERCPPLLFQANKKGET-PLHLAARYGHANVVKLLIERAEALPSDPESRVTKAKMMLRMT 127

Query: 112 NKEKHTALHEAVFHKIVDVVKILTREDLDYPYSANNYNKTPLCMVAE--YEHSSHMVVAI 169
           N E+ TALHEA  +    VV+ILT+ED ++PYSAN   +TPL + A    +    ++  I
Sbjct: 128 NGERDTALHEAARNNQSHVVEILTKEDPEFPYSANVDGETPLYIAASSWVQVREKVIDEI 187

Query: 170 LKNCTSVSH 178
           L NC S  H
Sbjct: 188 LTNCISAKH 196

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224127089|ref|XP_002329390.1| predicted protein [Populus trichocarpa] gi|222870440|gb|EEF07571.1| predicted protein [Populus trichocarpa]

 Score =  103 bits (256), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 72/189 (38%), Positives = 102/189 (53%), Gaps = 44/189 (23%)

Query: 30  IDPNLFKAAAAGNLEPFKD-----------------------MAREE--------ILEIC 58
           +DP LFKAA AGN+ PF++                        +RE         ILE+C
Sbjct: 5   MDPLLFKAAEAGNIGPFENYQTRLNQLLTPDENTILHVYLGNQSREPESTDFVDIILEMC 64

Query: 59  PSLLLQVNAKGDSRSLLVAAKFGHCDIVSVLIERAKLLQHEDEELESG------MIRMMN 112
           P LLLQ N KG+   L +AA++GH ++V VLI+ AK L  + E   SG      M+RM N
Sbjct: 65  PPLLLQANEKGEI-PLHLAARYGHSNVVKVLIDCAKALPTDPE---SGLTKAQKMLRMAN 120

Query: 113 KEKHTALHEAVFHKIVDVVKILTREDLDYPYSANNYNKTPLCMVAEYEHSSH---MVVAI 169
           +E+ TALHEA  ++   +V+ILT+ED ++ YSAN + +TPL + A          ++  I
Sbjct: 121 EEQDTALHEAARNRRSHLVEILTKEDPEFSYSANVHGETPLYIAAASSWGREREKVIDEI 180

Query: 170 LKNCTSVSH 178
           L NC SV +
Sbjct: 181 LTNCISVDY 189

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224127079|ref|XP_002329386.1| predicted protein [Populus trichocarpa] gi|224127100|ref|XP_002329395.1| predicted protein [Populus trichocarpa] gi|222870436|gb|EEF07567.1| predicted protein [Populus trichocarpa] gi|222870445|gb|EEF07576.1| predicted protein [Populus trichocarpa]

 Score =  102 bits (255), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 70/192 (36%), Positives = 99/192 (51%), Gaps = 47/192 (24%)

Query: 30  IDPNLFKAAAAGNLEPFKDMAR-------------------------------EEILEIC 58
           +DP LFKAA AGN+ PF++                                  ++ LE C
Sbjct: 1   MDPVLFKAAEAGNIGPFENYQTSLNQLLTADENTILHVYLKNQSSEPESTDFVDKFLERC 60

Query: 59  PSLLLQVNAKGDSRSLLVAAKFGHCDIVSVLIERAKLLQHEDEELESG------MIRMMN 112
           P LL Q N +G++  L +AA+ GH ++V VLI+RAK L  + E   SG      M+RM N
Sbjct: 61  PPLLFQANKRGET-PLHLAARNGHSNVVKVLIDRAKALPADPE---SGVTKAKMMLRMTN 116

Query: 113 KEKHTALHEAVFHKIVDVVKILTREDLDYPYSANNYNKTPLCMVAEY------EHSSHMV 166
           +E+ TALHEA  ++   VV+ILT+ED ++ Y AN + +TPL + A        E    +V
Sbjct: 117 EEQDTALHEAARNRRSHVVEILTKEDPEFSYPANVHGETPLYIAASIGFLMFSEEHGKVV 176

Query: 167 VAILKNCTSVSH 178
             IL NC SV +
Sbjct: 177 DGILGNCISVDY 188

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224127096|ref|XP_002329393.1| predicted protein [Populus trichocarpa] gi|222870443|gb|EEF07574.1| predicted protein [Populus trichocarpa]

 Score =  100 bits (250), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 71/191 (37%), Positives = 101/191 (52%), Gaps = 46/191 (24%)

Query: 30  IDPNLFKAAAAGNLEPFKDMAR-------------------------------EEILEIC 58
           +DP LFKAA AGN+ PF++                                  ++ILE+C
Sbjct: 5   MDPVLFKAAEAGNIGPFENDQTCLNQLFTPDENTILHVCLGNQSSEPESTYFVDKILEMC 64

Query: 59  PSLLLQVNAKGDSRSLLVAAKFGHCDIVSVLIERAKLLQHEDEELESG------MIRMMN 112
           P LLLQ N KG+   L +AA++GH ++V VLI+RA+       + ESG      M+RM N
Sbjct: 65  PPLLLQANKKGEI-PLHLAARYGHSNVVRVLIDRARA---RPTDPESGVTEAKKMLRMTN 120

Query: 113 KEKHTALHEAVFHKIVDVVKILTREDLDYPYSANNYNKTPLCMVAEY-----EHSSHMVV 167
            E+ TALHEA  ++   VV+ILT+ED  + YSAN + +TPL + A       +    +V 
Sbjct: 121 VEQDTALHEAARNRRGHVVEILTKEDPYFSYSANVHEETPLYIAASIVSRPSKELRKVVN 180

Query: 168 AILKNCTSVSH 178
            IL+NC SV +
Sbjct: 181 EILRNCISVDY 191

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224127106|ref|XP_002329398.1| predicted protein [Populus trichocarpa] gi|222870448|gb|EEF07579.1| predicted protein [Populus trichocarpa]

 Score =  100 bits (250), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 68/193 (35%), Positives = 98/193 (50%), Gaps = 48/193 (24%)

Query: 30  IDPNLFKAAAAGNLEPFKDMAR--------------------------------EEILEI 57
           +DP LFKAA AGN+ PF++                                   ++ LE 
Sbjct: 1   MDPVLFKAAEAGNIGPFENYQTCSLNQLLTPDENTILHVYLKNQSSEPESTDFVDKFLER 60

Query: 58  CPSLLLQVNAKGDSRSLLVAAKFGHCDIVSVLIERAKLLQHEDEELESG------MIRMM 111
           CP LL Q N +G++  L + A++GH ++V VLI+RAK L  + E   SG      M+RM 
Sbjct: 61  CPPLLFQANKRGET-PLHLEARYGHSNVVKVLIDRAKALPADPE---SGVTKAKMMLRMT 116

Query: 112 NKEKHTALHEAVFHKIVDVVKILTREDLDYPYSANNYNKTPLCMVAEY------EHSSHM 165
           N+E+ TALHEA  ++   VV+ILT+ED ++ Y AN + +TPL +          E    +
Sbjct: 117 NEEQDTALHEAARNRRSHVVEILTKEDPEFSYPANVHGETPLYIAVSIGFLMFSEEHGKV 176

Query: 166 VVAILKNCTSVSH 178
           V  IL NC SV +
Sbjct: 177 VDGILGNCISVDY 189

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

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Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	179
TAIR|locus:2129685	694	AT4G14390 "AT4G14390" [Arabido	0.737	0.190	0.308	4.1e-06
TAIR|locus:2138391	572	AT4G05040 "AT4G05040" [Arabido	0.737	0.230	0.315	3.8e-05
SGD|S000006160	200	YAR1 "Ankyrin-repeat containin	0.592	0.53	0.312	0.00013
TAIR|locus:2020833	616	AT1G03670 "AT1G03670" [Arabido	0.664	0.193	0.309	0.00027

TAIR|locus:2129685 AT4G14390 "AT4G14390" [Arabidopsis thaliana (taxid:3702)]

 Score = 126 (49.4 bits), Expect = 4.1e-06, P = 4.1e-06
 Identities = 45/146 (30%), Positives = 69/146 (47%)

Query:    31 DPNLFKAAAAGNLEPFKDMAREEILEICPSLLLQVNAKGDSRSLLVAAKFGHCDIVSVLI 90
             D  L  A   G+LE  K++  E     CP LLL+ N+ G +  L VAA  GH  IV   +
Sbjct:   133 DSILHLAVTWGHLELVKEIVCE-----CPRLLLEQNSSGQT-PLHVAAHSGHTTIVEAFV 186

Query:    91 -----ERAKLLQHEDEELESGMIRMMNKEKHTALHEAVFHKIVDVVKILTREDLDYPYSA 145
                    A+L   E E +   +++  +K+ +TAL+ A+  +  ++   L   + D P+  
Sbjct:   187 ALVTFSSARLCNEESERMNPYVLK--DKDGNTALYYAIEGRYFEMAVCLVNANQDAPFLG 244

Query:   146 NNYNKTPLCMVAEYEHSSHMVVAILK 171
             N Y  + L  VA       +V AILK
Sbjct:   245 NKYGVSSL-FVAINTGDVSLVKAILK 269

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2138391 AT4G05040 "AT4G05040" [Arabidopsis thaliana (taxid:3702)]

 Score = 119 (46.9 bits), Expect = 3.8e-05, P = 3.8e-05
 Identities = 46/146 (31%), Positives = 71/146 (48%)

Query:    31 DPNLFKAAAAGNLEPFKDMAREEILEICPSLLLQVNAKGDSRSLLVAAKFGHCDIVSVLI 90
             D  L  AA  G+LE  K++  E     CP L+L++N K D   L VAA  GH  IV  L+
Sbjct:   116 DSVLHLAARWGHLELVKNIISE-----CPCLVLELNFK-DQLPLHVAAHAGHSAIVEALV 169

Query:    91 ERA-----KLLQHEDEELESGMIRMMNKEKHTALHEAVFHKIVDVVKILTREDLDYPYSA 145
                     +L + + E L   ++R  +K  +TALH A+  + +++   L  E+ +  +  
Sbjct:   170 ASVTFFSDRLAEEDRERLNPYVLR--DKYGNTALHLAIEGRYMEMAASLVNENQNASFLE 227

Query:   146 NNYNKTPLCMVAEYEHSSHMVVAILK 171
             NN   + L M  E    + +V  ILK
Sbjct:   228 NNEGISSLYMAVEAGDVT-LVKEILK 252

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

SGD|S000006160 YAR1 "Ankyrin-repeat containing, nucleocytoplasmic shuttling chaperone" [Saccharomyces cerevisiae (taxid:4932)]

 Score = 108 (43.1 bits), Expect = 0.00013, P = 0.00013
 Identities = 35/112 (31%), Positives = 58/112 (51%)

Query:    38 AAAGNLEPFKDMAREEILEICPSLLLQVN-AKGDSRSLLVAAKFGHCDIVSVLIERAKLL 96
             A AG+L+  KD+    +    P LL     ++ DS +L +AA  GH + V  ++E     
Sbjct:    20 ARAGDLDSLKDIFTTLV---SPELLSTCKESESDSTALHMAAANGHIETVRYILETVSRA 76

Query:    97 QHEDEELESGMIRMMNKEKHTALHEAVFHKIVDVVKILTREDLDYPYSANNY 148
              +  E+L++  +  +NK  +TALH A  +  +DVVK+L  E    P+  N +
Sbjct:    77 -NSAEDLKA-FVNEVNKTGNTALHWASLNGKLDVVKLLCDEYEADPFIRNKF 126

GO:0005634 "nucleus" evidence=IGI;IDA

GO:0000056 "ribosomal small subunit export from nucleus" evidence=IGI;IMP

GO:0051082 "unfolded protein binding" evidence=IMP

GO:0034599 "cellular response to oxidative stress" evidence=IMP

GO:0032880 "regulation of protein localization" evidence=IMP;IPI

GO:0005737 "cytoplasm" evidence=IDA

GO:0042274 "ribosomal small subunit biogenesis" evidence=IGI;IMP

GO:0006970 "response to osmotic stress" evidence=IMP

TAIR|locus:2020833 AT1G03670 "AT1G03670" [Arabidopsis thaliana (taxid:3702)]

 Score = 113 (44.8 bits), Expect = 0.00027, P = 0.00027
 Identities = 39/126 (30%), Positives = 64/126 (50%)

Query:    52 EEILEICPSLLLQVNAKGDSRSLLVAAKFGHCDIVSVLIERAKLLQHEDEELESGMIRMM 111
             E I+   P+LL  VN  G++ +L VAA+ G  +IV +L+   + +  E    ++  I   
Sbjct:    89 EFIISTFPNLLQNVNLMGET-TLHVAARAGSLNIVEILV---RFIT-ESSSYDA-FIAAK 142

Query:   112 NKEKHTALHEAVFHKIVDVVKILTREDLDYPYSANNYNKTPLCMVAEYEHSSHMVVAILK 171
             +K   TALH A+  K V+V   L     D  +  NN   +PL M  E  +   +V+ +L+
Sbjct:   143 SKNGDTALHAALKGKHVEVAFCLVSVKHDVSFDKNNDEASPLYMAVEAGYHE-LVLKMLE 201

Query:   172 NCTSVS 177
             + +S S
Sbjct:   202 SSSSPS 207


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.317   0.132   0.367    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      179       179   0.00089  109 3  11 22  0.42    32
                                                     31  0.39    35


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  4
  No. of states in DFA:  567 (60 KB)
  Total size of DFA:  146 KB (2090 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  18.83u 0.11s 18.94t   Elapsed:  00:00:01
  Total cpu time:  18.83u 0.11s 18.94t   Elapsed:  00:00:02
  Start:  Mon May 20 22:13:27 2013   End:  Mon May 20 22:13:29 2013

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: eugene3.01200026 hypothetical protein (399 aa) (Populus trichocarpa)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	179
cd00204	126	cd00204, ANK, ankyrin repeats; ankyrin repeats med	1e-06
pfam12796	91	pfam12796, Ank_2, Ankyrin repeats (3 copies)	6e-05
cd00204	126	cd00204, ANK, ankyrin repeats; ankyrin repeats med	9e-04

>gnl|CDD|238125 cd00204, ANK, ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins

 Score = 45.5 bits (108), Expect = 1e-06
 Identities = 39/143 (27%), Positives = 64/143 (44%), Gaps = 33/143 (23%)

Query: 34  LFKAAAAGNLEPFKDMAREEILEICPSLLLQVNAKGDSRS------LLVAAKFGHCDIVS 87
           L  AA+ G+LE                LLL+  A  +++       L +AAK GH +IV 
Sbjct: 11  LHLAASNGHLE-------------VVKLLLENGADVNAKDNDGRTPLHLAAKNGHLEIVK 57

Query: 88  VLIERAKLLQHEDEELESGMIRMMNKEKHTALHEAVFHKIVDVVKILTREDLDYPYSANN 147
           +L+E+   +   D            K+ +T LH A  +  +DVVK+L +   D   + + 
Sbjct: 58  LLLEKGADVNARD------------KDGNTPLHLAARNGNLDVVKLLLKHGAD-VNARDK 104

Query: 148 YNKTPLCMVAEYEHSSHMVVAIL 170
             +TPL + A+  H   +V  +L
Sbjct: 105 DGRTPLHLAAKNGH-LEVVKLLL 126

The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other types of domains. The structural repeat unit contains two antiparallel helices and a beta-hairpin, repeats are stacked in a superhelical arrangement; this alignment contains 4 consecutive repeats. Length = 126

>gnl|CDD|205076 pfam12796, Ank_2, Ankyrin repeats (3 copies)

 Score = 39.5 bits (93), Expect = 6e-05
 Identities = 30/101 (29%), Positives = 48/101 (47%), Gaps = 21/101 (20%)

Query: 34  LFKAAAAGNLEPFKDMAREEILEICPSLLLQVNAKGDSRSLLVAAKFGHCDIVSVLIERA 93
           L  AA  GNLE  K      +LE        VN      +L +AA+ G+ +IV +L+E  
Sbjct: 1   LHLAAKNGNLELVK-----LLLEKGAD----VNLGDTDTALHLAARNGNLEIVKLLLE-- 49

Query: 94  KLLQHEDEELESGMIRMMNKEKHTALHEAVFHKIVDVVKIL 134
               H  +      +   +K+ +TALH A  +  +++VK+L
Sbjct: 50  ----HGAD------VNAKDKDGNTALHLAARNGNLEIVKLL 80

Length = 91

>gnl|CDD|238125 cd00204, ANK, ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins

 Score = 37.4 bits (87), Expect = 9e-04
 Identities = 19/68 (27%), Positives = 35/68 (51%), Gaps = 2/68 (2%)

Query: 112 NKEKHTALHEAVFHKIVDVVKILTREDLDYPYSANNYNKTPLCMVAEYEHSSHMVVAILK 171
           +++  T LH A  +  ++VVK+L     D   + +N  +TPL + A+  H   +V  +L+
Sbjct: 4   DEDGRTPLHLAASNGHLEVVKLLLENGAD-VNAKDNDGRTPLHLAAKNGH-LEIVKLLLE 61

Query: 172 NCTSVSHR 179
               V+ R
Sbjct: 62  KGADVNAR 69

The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other types of domains. The structural repeat unit contains two antiparallel helices and a beta-hairpin, repeats are stacked in a superhelical arrangement; this alignment contains 4 consecutive repeats. Length = 126

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	179
KOG4412	226	consensus 26S proteasome regulatory complex, subun	99.95
KOG4412	226	consensus 26S proteasome regulatory complex, subun	99.94
PHA02791	284	ankyrin-like protein; Provisional	99.93
PHA02791	284	ankyrin-like protein; Provisional	99.93
PHA02875	413	ankyrin repeat protein; Provisional	99.92
PHA02743	166	Viral ankyrin protein; Provisional	99.92
PHA02875	413	ankyrin repeat protein; Provisional	99.91
PHA02741	169	hypothetical protein; Provisional	99.91
PHA02859	209	ankyrin repeat protein; Provisional	99.9
PHA02878	477	ankyrin repeat protein; Provisional	99.9
KOG0509	600	consensus Ankyrin repeat and DHHC-type Zn-finger d	99.9
KOG0509	600	consensus Ankyrin repeat and DHHC-type Zn-finger d	99.9
PHA02736	154	Viral ankyrin protein; Provisional	99.9
PHA02874	434	ankyrin repeat protein; Provisional	99.9
PHA02874	434	ankyrin repeat protein; Provisional	99.9
PLN03192	823	Voltage-dependent potassium channel; Provisional	99.9
PHA02859	209	ankyrin repeat protein; Provisional	99.9
KOG0512	228	consensus Fetal globin-inducing factor (contains a	99.89
PHA02878	477	ankyrin repeat protein; Provisional	99.89
PHA03100	480	ankyrin repeat protein; Provisional	99.89
KOG0508	615	consensus Ankyrin repeat protein [General function	99.88
KOG0510	929	consensus Ankyrin repeat protein [General function	99.88
PHA03100	480	ankyrin repeat protein; Provisional	99.88
PHA02884	300	ankyrin repeat protein; Provisional	99.88
KOG0510	929	consensus Ankyrin repeat protein [General function	99.87
PHA02716	764	CPXV016; CPX019; EVM010; Provisional	99.87
PHA02795	437	ankyrin-like protein; Provisional	99.86
PHA02798	489	ankyrin-like protein; Provisional	99.86
PHA02716	764	CPXV016; CPX019; EVM010; Provisional	99.86
PHA03095	471	ankyrin-like protein; Provisional	99.86
KOG0508	615	consensus Ankyrin repeat protein [General function	99.86
PHA02946	446	ankyin-like protein; Provisional	99.86
PHA02946	446	ankyin-like protein; Provisional	99.85
PHA02876	682	ankyrin repeat protein; Provisional	99.85
PHA03095	471	ankyrin-like protein; Provisional	99.85
PF12796	89	Ank_2: Ankyrin repeats (3 copies); InterPro: IPR02	99.85
PHA02795	437	ankyrin-like protein; Provisional	99.84
PHA02989	494	ankyrin repeat protein; Provisional	99.84
KOG4177	1143	consensus Ankyrin [Cell wall/membrane/envelope bio	99.83
PHA02798	489	ankyrin-like protein; Provisional	99.83
KOG0502	296	consensus Integral membrane ankyrin-repeat protein	99.83
PHA02989	494	ankyrin repeat protein; Provisional	99.83
KOG4177	1143	consensus Ankyrin [Cell wall/membrane/envelope bio	99.83
PHA02876	682	ankyrin repeat protein; Provisional	99.82
PF12796	89	Ank_2: Ankyrin repeats (3 copies); InterPro: IPR02	99.82
KOG0514	452	consensus Ankyrin repeat protein [General function	99.81
PHA02741	169	hypothetical protein; Provisional	99.81
PHA02884	300	ankyrin repeat protein; Provisional	99.81
PHA02917	661	ankyrin-like protein; Provisional	99.81
PHA02917	661	ankyrin-like protein; Provisional	99.79
KOG0502	296	consensus Integral membrane ankyrin-repeat protein	99.78
cd00204	126	ANK ankyrin repeats; ankyrin repeats mediate prote	99.77
PHA02730	672	ankyrin-like protein; Provisional	99.77
KOG0505	527	consensus Myosin phosphatase, regulatory subunit [	99.77
KOG0195	448	consensus Integrin-linked kinase [Signal transduct	99.76
KOG0195	448	consensus Integrin-linked kinase [Signal transduct	99.76
PHA02743	166	Viral ankyrin protein; Provisional	99.76
KOG4214	117	consensus Myotrophin and similar proteins [Transcr	99.76
PHA02730	672	ankyrin-like protein; Provisional	99.75
PHA02736	154	Viral ankyrin protein; Provisional	99.74
TIGR00870	743	trp transient-receptor-potential calcium channel p	99.74
PHA02792	631	ankyrin-like protein; Provisional	99.72
PLN03192	823	Voltage-dependent potassium channel; Provisional	99.71
KOG0507	854	consensus CASK-interacting adaptor protein (caskin	99.71
KOG0514	452	consensus Ankyrin repeat protein [General function	99.7
PHA02792	631	ankyrin-like protein; Provisional	99.7
KOG0512	228	consensus Fetal globin-inducing factor (contains a	99.7
COG0666	235	Arp FOG: Ankyrin repeat [General function predicti	99.68
KOG0515	752	consensus p53-interacting protein 53BP/ASPP, conta	99.68
cd00204	126	ANK ankyrin repeats; ankyrin repeats mediate prote	99.67
KOG0507	854	consensus CASK-interacting adaptor protein (caskin	99.67
TIGR00870	743	trp transient-receptor-potential calcium channel p	99.67
KOG4214	117	consensus Myotrophin and similar proteins [Transcr	99.67
KOG0505	527	consensus Myosin phosphatase, regulatory subunit [	99.66
KOG1710	396	consensus MYND Zn-finger and ankyrin repeat protei	99.65
PF13637	54	Ank_4: Ankyrin repeats (many copies); PDB: 3B95_A	99.61
PTZ00322	664	6-phosphofructo-2-kinase/fructose-2,6-biphosphatas	99.6
KOG3676	782	consensus Ca2+-permeable cation channel OSM-9 and	99.6
PF13637	54	Ank_4: Ankyrin repeats (many copies); PDB: 3B95_A	99.6
PTZ00322	664	6-phosphofructo-2-kinase/fructose-2,6-biphosphatas	99.59
PF13857	56	Ank_5: Ankyrin repeats (many copies); PDB: 1SW6_A	99.57
KOG0515	752	consensus p53-interacting protein 53BP/ASPP, conta	99.53
KOG3676	782	consensus Ca2+-permeable cation channel OSM-9 and	99.52
COG0666	235	Arp FOG: Ankyrin repeat [General function predicti	99.51
PF13857	56	Ank_5: Ankyrin repeats (many copies); PDB: 1SW6_A	99.49
KOG4369	2131	consensus RTK signaling protein MASK/UNC-44 [Signa	99.42
KOG1710	396	consensus MYND Zn-finger and ankyrin repeat protei	99.29
KOG0782	1004	consensus Predicted diacylglycerol kinase [Signal	99.25
KOG0783	1267	consensus Uncharacterized conserved protein, conta	99.23
KOG4369	2131	consensus RTK signaling protein MASK/UNC-44 [Signa	99.12
PF13606	30	Ank_3: Ankyrin repeat	99.07
PF13606	30	Ank_3: Ankyrin repeat	99.04
KOG0506	622	consensus Glutaminase (contains ankyrin repeat) [A	99.03
KOG0818	669	consensus GTPase-activating proteins of the GIT fa	99.03
KOG0506	622	consensus Glutaminase (contains ankyrin repeat) [A	99.01
KOG3609	822	consensus Receptor-activated Ca2+-permeable cation	99.01
KOG0705	749	consensus GTPase-activating protein Centaurin gamm	98.97
PF00023	33	Ank: Ankyrin repeat Hereditary spherocytosis; Inte	98.94
KOG0522	560	consensus Ankyrin repeat protein [General function	98.89
PF00023	33	Ank: Ankyrin repeat Hereditary spherocytosis; Inte	98.89
KOG0522	560	consensus Ankyrin repeat protein [General function	98.82
KOG0818	669	consensus GTPase-activating proteins of the GIT fa	98.81
KOG0705	749	consensus GTPase-activating protein Centaurin gamm	98.75
KOG0511	516	consensus Ankyrin repeat protein [General function	98.48
KOG0783	1267	consensus Uncharacterized conserved protein, conta	98.48
KOG0521	785	consensus Putative GTPase activating proteins (GAP	98.43
KOG0511	516	consensus Ankyrin repeat protein [General function	98.43
KOG0782	1004	consensus Predicted diacylglycerol kinase [Signal	98.41
KOG0520	975	consensus Uncharacterized conserved protein, conta	98.35
KOG2384	223	consensus Major histocompatibility complex protein	98.34
KOG2384	223	consensus Major histocompatibility complex protein	98.34
KOG0520	975	consensus Uncharacterized conserved protein, conta	98.22
KOG0521	785	consensus Putative GTPase activating proteins (GAP	97.75
smart00248	30	ANK ankyrin repeats. Ankyrin repeats are about 33	97.57
smart00248	30	ANK ankyrin repeats. Ankyrin repeats are about 33	97.49
KOG3609	822	consensus Receptor-activated Ca2+-permeable cation	97.44
KOG2505	591	consensus Ankyrin repeat protein [General function	97.41
PF06128	284	Shigella_OspC: Shigella flexneri OspC protein; Int	96.98
KOG2505	591	consensus Ankyrin repeat protein [General function	96.73
PF03158	192	DUF249: Multigene family 530 protein; InterPro: IP	96.4
PF06128	284	Shigella_OspC: Shigella flexneri OspC protein; Int	95.96
PF11929	76	DUF3447: Domain of unknown function (DUF3447); Int	94.74
PF11929	76	DUF3447: Domain of unknown function (DUF3447); Int	93.51
PF03158	192	DUF249: Multigene family 530 protein; InterPro: IP	90.04

>KOG4412 consensus 26S proteasome regulatory complex, subunit PSMD10 [Posttranslational modification, protein turnover, chaperones]

Probab=99.95  E-value=1.7e-27  Score=157.73  Aligned_cols=128  Identities=23%  Similarity=0.279  Sum_probs=111.3

Q ss_pred             CCHHHHHHHHcCChHHHHHHHHHHHHhhCcccccccCCCCCcHHHHHHHHcCCHHHHHHHHHhhcccCCchhhhhhHHHH
Q 042183           30 IDPNLFKAAAAGNLEPFKDMAREEILEICPSLLLQVNAKGDSRSLLVAAKFGHCDIVSVLIERAKLLQHEDEELESGMIR  109 (179)
Q Consensus        30 ~~~~l~~A~~~g~~~~~~~ll~~~~~~~~~~~~~~~~~~g~t~~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~~~~~~~  109 (179)
                      ..+|||.||..|+.++|+.|+.     ..+..+|..+..|.| +||||+..|+.+|+++|+++|+.+..           
T Consensus        72 GWtPlhia~s~g~~evVk~Ll~-----r~~advna~tn~G~T-~LHyAagK~r~eIaqlLle~ga~i~~-----------  134 (226)
T KOG4412|consen   72 GWTPLHIAASNGNDEVVKELLN-----RSGADVNATTNGGQT-CLHYAAGKGRLEIAQLLLEKGALIRI-----------  134 (226)
T ss_pred             CCchhhhhhhcCcHHHHHHHhc-----CCCCCcceecCCCcc-eehhhhcCChhhHHHHHHhcCCCCcc-----------
Confidence            4578888888888888888765     336677888888888 88998888888888888888887766           


Q ss_pred             hccCCCCcHHHHHHHcCCHHHHHHHHhcCCCCCCCCCCCCCCHHHHHHHhcCCHHHHHHHHhcCCCCC
Q 042183          110 MMNKEKHTALHEAVFHKIVDVVKILTREDLDYPYSANNYNKTPLCMVAEYEHSSHMVVAILKNCTSVS  177 (179)
Q Consensus       110 ~~~~~g~t~l~~A~~~g~~~~~~~Ll~~~~~~~~~~~~~g~tpl~~A~~~~~~~~~~~~Ll~~g~~~~  177 (179)
                       +|..|.||||.|+.-|..+++++|+..|+.++ ..|..|+||||.|.. -|+.+++.+|+++|++.+
T Consensus       135 -kD~~~qtplHRAAavGklkvie~Li~~~a~~n-~qDk~G~TpL~~al~-e~~~d~a~lLV~~gAd~~  199 (226)
T KOG4412|consen  135 -KDKQGQTPLHRAAAVGKLKVIEYLISQGAPLN-TQDKYGFTPLHHALA-EGHPDVAVLLVRAGADTD  199 (226)
T ss_pred             -cccccCchhHHHHhccchhhHHHHHhcCCCCC-cccccCccHHHHHHh-ccCchHHHHHHHhcccee
Confidence             99999999999999999999999999998876 899999999999988 899999999999998865

>KOG4412 consensus 26S proteasome regulatory complex, subunit PSMD10 [Posttranslational modification, protein turnover, chaperones]

Probab=99.94  E-value=4.1e-27  Score=155.88  Aligned_cols=130  Identities=16%  Similarity=0.139  Sum_probs=119.2

Q ss_pred             cCCHHHHHHHHcCChHHHHHHHHHHHHhhCcccccccCCCCCcHHHHHHHHcCCHHHHHHHHHh-hcccCCchhhhhhHH
Q 042183           29 QIDPNLFKAAAAGNLEPFKDMAREEILEICPSLLLQVNAKGDSRSLLVAAKFGHCDIVSVLIER-AKLLQHEDEELESGM  107 (179)
Q Consensus        29 ~~~~~l~~A~~~g~~~~~~~ll~~~~~~~~~~~~~~~~~~g~t~~L~~A~~~g~~~~v~~ll~~-~~~~~~~~~~~~~~~  107 (179)
                      +.-+|||+||..|+.+++..|++     +....++.+|..||| |||+|+..|+.++|+.|+.+ +++++.         
T Consensus        37 D~Rt~LHwa~S~g~~eiv~fLls-----q~nv~~ddkDdaGWt-Plhia~s~g~~evVk~Ll~r~~advna---------  101 (226)
T KOG4412|consen   37 DGRTPLHWACSFGHVEIVYFLLS-----QPNVKPDDKDDAGWT-PLHIAASNGNDEVVKELLNRSGADVNA---------  101 (226)
T ss_pred             cCCceeeeeeecCchhHHHHHHh-----cCCCCCCCccccCCc-hhhhhhhcCcHHHHHHHhcCCCCCcce---------
Confidence            34588999999999999998876     455567888999999 99999999999999999998 787776         


Q ss_pred             HHhccCCCCcHHHHHHHcCCHHHHHHHHhcCCCCCCCCCCCCCCHHHHHHHhcCCHHHHHHHHhcCCCCCC
Q 042183          108 IRMMNKEKHTALHEAVFHKIVDVVKILTREDLDYPYSANNYNKTPLCMVAEYEHSSHMVVAILKNCTSVSH  178 (179)
Q Consensus       108 ~~~~~~~g~t~l~~A~~~g~~~~~~~Ll~~~~~~~~~~~~~g~tpl~~A~~~~~~~~~~~~Ll~~g~~~~~  178 (179)
                         .+..|.|+||+|+..|+.+++++|++.|+.++ .+|..|.||||-|+. .|..+++++|+..|+.++.
T Consensus       102 ---~tn~G~T~LHyAagK~r~eIaqlLle~ga~i~-~kD~~~qtplHRAAa-vGklkvie~Li~~~a~~n~  167 (226)
T KOG4412|consen  102 ---TTNGGQTCLHYAAGKGRLEIAQLLLEKGALIR-IKDKQGQTPLHRAAA-VGKLKVIEYLISQGAPLNT  167 (226)
T ss_pred             ---ecCCCcceehhhhcCChhhHHHHHHhcCCCCc-ccccccCchhHHHHh-ccchhhHHHHHhcCCCCCc
Confidence               99999999999999999999999999999876 999999999999999 9999999999999987764

>PHA02791 ankyrin-like protein; Provisional

Probab=99.93  E-value=6.9e-25  Score=160.51  Aligned_cols=140  Identities=16%  Similarity=0.150  Sum_probs=110.9

Q ss_pred             CCHHHHHHHHcCChHHHHHHHHHHHHhhCcccccccCCCCCcHHHHHHHHcCCHHHHHHHHHhhcccCCchh----h---
Q 042183           30 IDPNLFKAAAAGNLEPFKDMAREEILEICPSLLLQVNAKGDSRSLLVAAKFGHCDIVSVLIERAKLLQHEDE----E---  102 (179)
Q Consensus        30 ~~~~l~~A~~~g~~~~~~~ll~~~~~~~~~~~~~~~~~~g~t~~L~~A~~~g~~~~v~~ll~~~~~~~~~~~----~---  102 (179)
                      ..+|||.|+..|+.++++.|++      .+..++.+|..|.| |||+|+..|+.+++++|+++|++.+....    .   
T Consensus        61 ~~TpLh~Aa~~g~~eiV~lLL~------~Gadvn~~d~~G~T-pLh~Aa~~g~~eivk~Ll~~gadin~~~~~g~~TpL~  133 (284)
T PHA02791         61 NEFPLHQAATLEDTKIVKILLF------SGMDDSQFDDKGNT-ALYYAVDSGNMQTVKLFVKKNWRLMFYGKTGWKTSFY  133 (284)
T ss_pred             CCCHHHHHHHCCCHHHHHHHHH------CCCCCCCCCCCCCC-HHHHHHHcCCHHHHHHHHHCCCCcCccCCCCCcHHHH
Confidence            3578888888888888888876      66778888999999 99999999999999999999987754221    1   


Q ss_pred             ---------hhhHHHH----hcc-CCCCcHHHHHHHcCCHHHHHHHHhcCCCCCCCCCCCCCCH-HHHHHHhcCCHHHHH
Q 042183          103 ---------LESGMIR----MMN-KEKHTALHEAVFHKIVDVVKILTREDLDYPYSANNYNKTP-LCMVAEYEHSSHMVV  167 (179)
Q Consensus       103 ---------~~~~~~~----~~~-~~g~t~l~~A~~~g~~~~~~~Ll~~~~~~~~~~~~~g~tp-l~~A~~~~~~~~~~~  167 (179)
                               .....+.    ..+ ..|.||||+|+..|+.+++++|+++|++++ .++..|.|| ||+|+. .|+.++++
T Consensus       134 ~Aa~~g~~eivk~LL~~~~~~~d~~~g~TpLh~Aa~~g~~eiv~lLL~~gAd~n-~~d~~g~t~~L~~Aa~-~~~~e~v~  211 (284)
T PHA02791        134 HAVMLNDVSIVSYFLSEIPSTFDLAILLSCIHITIKNGHVDMMILLLDYMTSTN-TNNSLLFIPDIKLAID-NKDLEMLQ  211 (284)
T ss_pred             HHHHcCCHHHHHHHHhcCCcccccccCccHHHHHHHcCCHHHHHHHHHCCCCCC-cccCCCCChHHHHHHH-cCCHHHHH
Confidence                     0000111    122 247899999999999999999999999876 788888876 999999 99999999


Q ss_pred             HHHhcCCCCCC
Q 042183          168 AILKNCTSVSH  178 (179)
Q Consensus       168 ~Ll~~g~~~~~  178 (179)
                      +|+++|++++.
T Consensus       212 lLl~~Ga~in~  222 (284)
T PHA02791        212 ALFKYDINIYS  222 (284)
T ss_pred             HHHHCCCCCcc
Confidence            99999988753

>PHA02791 ankyrin-like protein; Provisional

Probab=99.93  E-value=1.6e-24  Score=158.62  Aligned_cols=114  Identities=17%  Similarity=0.192  Sum_probs=83.1

Q ss_pred             HHHHHHHHcCChHHHHHHHHHHHHhhCcccccccC-CCCCcHHHHHHHHcCCHHHHHHHHHhhcccCCchhhhhhHHHHh
Q 042183           32 PNLFKAAAAGNLEPFKDMAREEILEICPSLLLQVN-AKGDSRSLLVAAKFGHCDIVSVLIERAKLLQHEDEELESGMIRM  110 (179)
Q Consensus        32 ~~l~~A~~~g~~~~~~~ll~~~~~~~~~~~~~~~~-~~g~t~~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~~~~~~~~  110 (179)
                      +|||.|+..|+.++++.|++     ..+.   ..| ..|.| |||+|+..|+.+++++|+++|++++.            
T Consensus       130 TpL~~Aa~~g~~eivk~LL~-----~~~~---~~d~~~g~T-pLh~Aa~~g~~eiv~lLL~~gAd~n~------------  188 (284)
T PHA02791        130 TSFYHAVMLNDVSIVSYFLS-----EIPS---TFDLAILLS-CIHITIKNGHVDMMILLLDYMTSTNT------------  188 (284)
T ss_pred             HHHHHHHHcCCHHHHHHHHh-----cCCc---ccccccCcc-HHHHHHHcCCHHHHHHHHHCCCCCCc------------
Confidence            45555555555555555544     1111   112 23667 77777777777777777777776665            


Q ss_pred             ccCCCCcH-HHHHHHcCCHHHHHHHHhcCCCCCCCCCCCCCCHHHHHHHhcCCHHHHHHHHhcCCC
Q 042183          111 MNKEKHTA-LHEAVFHKIVDVVKILTREDLDYPYSANNYNKTPLCMVAEYEHSSHMVVAILKNCTS  175 (179)
Q Consensus       111 ~~~~g~t~-l~~A~~~g~~~~~~~Ll~~~~~~~~~~~~~g~tpl~~A~~~~~~~~~~~~Ll~~g~~  175 (179)
                      ++..|.|| ||+|+..|+.+++++|++.|++++ .+|..+ +|       .++.|++++|+++-++
T Consensus       189 ~d~~g~t~~L~~Aa~~~~~e~v~lLl~~Ga~in-~~~~~~-~~-------l~~~e~~~~ll~~~~~  245 (284)
T PHA02791        189 NNSLLFIPDIKLAIDNKDLEMLQALFKYDINIY-SVNLEN-VL-------LDDAEIAKMIIEKHVE  245 (284)
T ss_pred             ccCCCCChHHHHHHHcCCHHHHHHHHHCCCCCc-cCcccC-cc-------CCCHHHHHHHHHhhhh
Confidence            88888876 999999999999999999999986 788744 55       6899999999998765

>PHA02875 ankyrin repeat protein; Provisional

Probab=99.92  E-value=5.3e-24  Score=164.60  Aligned_cols=128  Identities=18%  Similarity=0.234  Sum_probs=85.0

Q ss_pred             CCHHHHHHHHcCChHHHHHHHHHHHHhhCcccccccCCCCCcHHHHHHHHcCCHHHHHHHHHhhcccCCchhhhhhHHHH
Q 042183           30 IDPNLFKAAAAGNLEPFKDMAREEILEICPSLLLQVNAKGDSRSLLVAAKFGHCDIVSVLIERAKLLQHEDEELESGMIR  109 (179)
Q Consensus        30 ~~~~l~~A~~~g~~~~~~~ll~~~~~~~~~~~~~~~~~~g~t~~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~~~~~~~  109 (179)
                      ..+|||.|+..|+.+.++.|++     ......+..+..|.| |||+|+..|+.+++++|+++|++++.           
T Consensus        68 ~~t~L~~A~~~g~~~~v~~Ll~-----~~~~~~~~~~~~g~t-pL~~A~~~~~~~iv~~Ll~~gad~~~-----------  130 (413)
T PHA02875         68 IESELHDAVEEGDVKAVEELLD-----LGKFADDVFYKDGMT-PLHLATILKKLDIMKLLIARGADPDI-----------  130 (413)
T ss_pred             cccHHHHHHHCCCHHHHHHHHH-----cCCcccccccCCCCC-HHHHHHHhCCHHHHHHHHhCCCCCCC-----------
Confidence            3456666666666666666654     111122334456777 77777777777777777777776665           


Q ss_pred             hccCCCCcHHHHHHHcCCHHHHHHHHhcCCCCCCCCCCCCCCHHHHHHHhcCCHHHHHHHHhcCCCCC
Q 042183          110 MMNKEKHTALHEAVFHKIVDVVKILTREDLDYPYSANNYNKTPLCMVAEYEHSSHMVVAILKNCTSVS  177 (179)
Q Consensus       110 ~~~~~g~t~l~~A~~~g~~~~~~~Ll~~~~~~~~~~~~~g~tpl~~A~~~~~~~~~~~~Ll~~g~~~~  177 (179)
                       ++..|.||||+|+..|+.+++++|++.|++++ .+|..|.||||+|+. .|+.+++++|+++|++++
T Consensus       131 -~~~~g~tpLh~A~~~~~~~~v~~Ll~~g~~~~-~~d~~g~TpL~~A~~-~g~~eiv~~Ll~~ga~~n  195 (413)
T PHA02875        131 -PNTDKFSPLHLAVMMGDIKGIELLIDHKACLD-IEDCCGCTPLIIAMA-KGDIAICKMLLDSGANID  195 (413)
T ss_pred             -CCCCCCCHHHHHHHcCCHHHHHHHHhcCCCCC-CCCCCCCCHHHHHHH-cCCHHHHHHHHhCCCCCC
Confidence             66667777777777777777777777777654 666677777777777 777777777777776665

>PHA02743 Viral ankyrin protein; Provisional

Probab=99.92  E-value=6.5e-24  Score=144.74  Aligned_cols=131  Identities=15%  Similarity=0.175  Sum_probs=113.3

Q ss_pred             CCHHHHHHHHcCChHHHHHHHHHHHHhhCcccccccCCCCCcHHHHHHHHcCCHH---HHHHHHHhhcccCCchhhhhhH
Q 042183           30 IDPNLFKAAAAGNLEPFKDMAREEILEICPSLLLQVNAKGDSRSLLVAAKFGHCD---IVSVLIERAKLLQHEDEELESG  106 (179)
Q Consensus        30 ~~~~l~~A~~~g~~~~~~~ll~~~~~~~~~~~~~~~~~~g~t~~L~~A~~~g~~~---~v~~ll~~~~~~~~~~~~~~~~  106 (179)
                      ....||.||+.|+++.++.+++.  +...+..++..|..|+| |||+|+..|+.+   ++++|+++|++++.        
T Consensus        20 ~~~~l~~a~~~g~~~~l~~~~~~--l~~~g~~~~~~d~~g~t-~Lh~Aa~~g~~~~~~~i~~Ll~~Gadin~--------   88 (166)
T PHA02743         20 EQNTFLRICRTGNIYELMEVAPF--ISGDGHLLHRYDHHGRQ-CTHMVAWYDRANAVMKIELLVNMGADINA--------   88 (166)
T ss_pred             CCcHHHHHHHcCCHHHHHHHHHH--HhhcchhhhccCCCCCc-HHHHHHHhCccCHHHHHHHHHHcCCCCCC--------
Confidence            44679999999999777766542  22356677888999999 999999998865   48999999998877        


Q ss_pred             HHHhcc-CCCCcHHHHHHHcCCHHHHHHHHh-cCCCCCCCCCCCCCCHHHHHHHhcCCHHHHHHHHhcCCCCC
Q 042183          107 MIRMMN-KEKHTALHEAVFHKIVDVVKILTR-EDLDYPYSANNYNKTPLCMVAEYEHSSHMVVAILKNCTSVS  177 (179)
Q Consensus       107 ~~~~~~-~~g~t~l~~A~~~g~~~~~~~Ll~-~~~~~~~~~~~~g~tpl~~A~~~~~~~~~~~~Ll~~g~~~~  177 (179)
                          ++ ..|.||||+|+..|+.+++++|+. .|+++. ..+..|.||||+|+. .++.+++++|+++|++++
T Consensus        89 ----~d~~~g~TpLh~A~~~g~~~iv~~Ll~~~gad~~-~~d~~g~tpL~~A~~-~~~~~iv~~Ll~~ga~~~  155 (166)
T PHA02743         89 ----RELGTGNTLLHIAASTKNYELAEWLCRQLGVNLG-AINYQHETAYHIAYK-MRDRRMMEILRANGAVCD  155 (166)
T ss_pred             ----CCCCCCCcHHHHHHHhCCHHHHHHHHhccCCCcc-CcCCCCCCHHHHHHH-cCCHHHHHHHHHcCCCCC
Confidence                87 589999999999999999999995 799876 789999999999999 999999999999998875

>PHA02875 ankyrin repeat protein; Provisional

Probab=99.91  E-value=3.5e-23  Score=160.08  Aligned_cols=128  Identities=17%  Similarity=0.110  Sum_probs=118.2

Q ss_pred             cCCHHHHHHHHcCChHHHHHHHHHHHHhhCcccccccCCCCCcHHHHHHHHcCCHHHHHHHHHhhcccCCchhhhhhHHH
Q 042183           29 QIDPNLFKAAAAGNLEPFKDMAREEILEICPSLLLQVNAKGDSRSLLVAAKFGHCDIVSVLIERAKLLQHEDEELESGMI  108 (179)
Q Consensus        29 ~~~~~l~~A~~~g~~~~~~~ll~~~~~~~~~~~~~~~~~~g~t~~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~~~~~~  108 (179)
                      ...+|||.|+..|+.++++.|++      .+..++.++..|.| |||+|+..|+.+++++|+++|+..+.          
T Consensus       101 ~g~tpL~~A~~~~~~~iv~~Ll~------~gad~~~~~~~g~t-pLh~A~~~~~~~~v~~Ll~~g~~~~~----------  163 (413)
T PHA02875        101 DGMTPLHLATILKKLDIMKLLIA------RGADPDIPNTDKFS-PLHLAVMMGDIKGIELLIDHKACLDI----------  163 (413)
T ss_pred             CCCCHHHHHHHhCCHHHHHHHHh------CCCCCCCCCCCCCC-HHHHHHHcCCHHHHHHHHhcCCCCCC----------
Confidence            45689999999999999999998      67788889999999 99999999999999999999998877          


Q ss_pred             HhccCCCCcHHHHHHHcCCHHHHHHHHhcCCCCCCCCCCCC-CCHHHHHHHhcCCHHHHHHHHhcCCCCC
Q 042183          109 RMMNKEKHTALHEAVFHKIVDVVKILTREDLDYPYSANNYN-KTPLCMVAEYEHSSHMVVAILKNCTSVS  177 (179)
Q Consensus       109 ~~~~~~g~t~l~~A~~~g~~~~~~~Ll~~~~~~~~~~~~~g-~tpl~~A~~~~~~~~~~~~Ll~~g~~~~  177 (179)
                        +|..|+||||+|+..|+.+++++|++.|++++ ..+..| .||+++|+. .|+.+++++|+++|++++
T Consensus       164 --~d~~g~TpL~~A~~~g~~eiv~~Ll~~ga~~n-~~~~~~~~t~l~~A~~-~~~~~iv~~Ll~~gad~n  229 (413)
T PHA02875        164 --EDCCGCTPLIIAMAKGDIAICKMLLDSGANID-YFGKNGCVAALCYAIE-NNKIDIVRLFIKRGADCN  229 (413)
T ss_pred             --CCCCCCCHHHHHHHcCCHHHHHHHHhCCCCCC-cCCCCCCchHHHHHHH-cCCHHHHHHHHHCCcCcc
Confidence              89999999999999999999999999999987 666666 589999999 999999999999999976

>PHA02741 hypothetical protein; Provisional

Probab=99.91  E-value=3.4e-23  Score=141.70  Aligned_cols=132  Identities=19%  Similarity=0.195  Sum_probs=113.3

Q ss_pred             ccCCHHHHHHHHcCChHHHHHHHHHHHHhhCcccccccCCCCCcHHHHHHHHcCC----HHHHHHHHHhhcccCCchhhh
Q 042183           28 LQIDPNLFKAAAAGNLEPFKDMAREEILEICPSLLLQVNAKGDSRSLLVAAKFGH----CDIVSVLIERAKLLQHEDEEL  103 (179)
Q Consensus        28 ~~~~~~l~~A~~~g~~~~~~~ll~~~~~~~~~~~~~~~~~~g~t~~L~~A~~~g~----~~~v~~ll~~~~~~~~~~~~~  103 (179)
                      ....++||.|++.|+.+.++.|+........+..++.+|..|.| |||+|+..|+    .+++++|++.|++.+.     
T Consensus        19 ~~g~t~Lh~Aa~~g~~~~v~~l~~~~~~~~~ga~in~~d~~g~T-~Lh~A~~~g~~~~~~~ii~~Ll~~gadin~-----   92 (169)
T PHA02741         19 SEGENFFHEAARCGCFDIIARFTPFIRGDCHAAALNATDDAGQM-CIHIAAEKHEAQLAAEIIDHLIELGADINA-----   92 (169)
T ss_pred             cCCCCHHHHHHHcCCHHHHHHHHHHhccchhhhhhhccCCCCCc-HHHHHHHcCChHHHHHHHHHHHHcCCCCCC-----
Confidence            34568999999999999999886411001134567889999999 9999999998    5899999999998877     


Q ss_pred             hhHHHHhccC-CCCcHHHHHHHcCCHHHHHHHHh-cCCCCCCCCCCCCCCHHHHHHHhcCCHHHHHHHHhcCC
Q 042183          104 ESGMIRMMNK-EKHTALHEAVFHKIVDVVKILTR-EDLDYPYSANNYNKTPLCMVAEYEHSSHMVVAILKNCT  174 (179)
Q Consensus       104 ~~~~~~~~~~-~g~t~l~~A~~~g~~~~~~~Ll~-~~~~~~~~~~~~g~tpl~~A~~~~~~~~~~~~Ll~~g~  174 (179)
                             ++. .|+||||+|+..++.+++++|+. .|+++. ..|..|+|||++|+. .++.+++++|++.++
T Consensus        93 -------~~~~~g~TpLh~A~~~~~~~iv~~Ll~~~g~~~~-~~n~~g~tpL~~A~~-~~~~~iv~~L~~~~~  156 (169)
T PHA02741         93 -------QEMLEGDTALHLAAHRRDHDLAEWLCCQPGIDLH-FCNADNKSPFELAID-NEDVAMMQILREIVA  156 (169)
T ss_pred             -------CCcCCCCCHHHHHHHcCCHHHHHHHHhCCCCCCC-cCCCCCCCHHHHHHH-CCCHHHHHHHHHHHH
Confidence                   775 89999999999999999999997 488876 889999999999999 999999999998764

>PHA02859 ankyrin repeat protein; Provisional

Probab=99.90  E-value=1.3e-22  Score=143.26  Aligned_cols=130  Identities=13%  Similarity=0.148  Sum_probs=100.6

Q ss_pred             ccCCHHHHHHHHcC--ChHHHHHHHHHHHHhhCcccccccC-CCCCcHHHHHHHHc---CCHHHHHHHHHhhcccCCchh
Q 042183           28 LQIDPNLFKAAAAG--NLEPFKDMAREEILEICPSLLLQVN-AKGDSRSLLVAAKF---GHCDIVSVLIERAKLLQHEDE  101 (179)
Q Consensus        28 ~~~~~~l~~A~~~g--~~~~~~~ll~~~~~~~~~~~~~~~~-~~g~t~~L~~A~~~---g~~~~v~~ll~~~~~~~~~~~  101 (179)
                      ....+|||.|+..+  +.++++.|++      .+..++.++ ..|.| |||+|+..   ++.+++++|+++|++++.   
T Consensus        49 ~~g~TpLh~a~~~~~~~~eiv~~Ll~------~gadvn~~~~~~g~T-pLh~a~~~~~~~~~eiv~~Ll~~gadin~---  118 (209)
T PHA02859         49 DLYETPIFSCLEKDKVNVEILKFLIE------NGADVNFKTRDNNLS-ALHHYLSFNKNVEPEILKILIDSGSSITE---  118 (209)
T ss_pred             ccCCCHHHHHHHcCCCCHHHHHHHHH------CCCCCCccCCCCCCC-HHHHHHHhCccccHHHHHHHHHCCCCCCC---
Confidence            34557777777644  6777777776      566667665 46777 88877653   367788888888777766   


Q ss_pred             hhhhHHHHhccCCCCcHHHHHHH--cCCHHHHHHHHhcCCCCCCCCCCCCCCHHHH-HHHhcCCHHHHHHHHhcCCCCCC
Q 042183          102 ELESGMIRMMNKEKHTALHEAVF--HKIVDVVKILTREDLDYPYSANNYNKTPLCM-VAEYEHSSHMVVAILKNCTSVSH  178 (179)
Q Consensus       102 ~~~~~~~~~~~~~g~t~l~~A~~--~g~~~~~~~Ll~~~~~~~~~~~~~g~tpl~~-A~~~~~~~~~~~~Ll~~g~~~~~  178 (179)
                               ++..|.||||.|+.  .++.+++++|++.|++++ .+|..|.||||. |+. .++.+++++|+++|++++.
T Consensus       119 ---------~d~~G~TpLh~a~~~~~~~~~iv~~Li~~gadin-~~d~~g~t~Lh~~a~~-~~~~~iv~~Ll~~Gadi~~  187 (209)
T PHA02859        119 ---------EDEDGKNLLHMYMCNFNVRINVIKLLIDSGVSFL-NKDFDNNNILYSYILF-HSDKKIFDFLTSLGIDINE  187 (209)
T ss_pred             ---------cCCCCCCHHHHHHHhccCCHHHHHHHHHcCCCcc-cccCCCCcHHHHHHHh-cCCHHHHHHHHHcCCCCCC
Confidence                     88899999998876  468899999999999976 789999999996 456 7889999999999988764

>PHA02878 ankyrin repeat protein; Provisional

Probab=99.90  E-value=6.1e-23  Score=161.34  Aligned_cols=140  Identities=19%  Similarity=0.100  Sum_probs=112.8

Q ss_pred             CCHHHHHHHHcCChHHHHHHHHHHHHhhCcccccccCCCCCcHHHHHHHHcCCHHHHHHHHHhhcccCCchhh-------
Q 042183           30 IDPNLFKAAAAGNLEPFKDMAREEILEICPSLLLQVNAKGDSRSLLVAAKFGHCDIVSVLIERAKLLQHEDEE-------  102 (179)
Q Consensus        30 ~~~~l~~A~~~g~~~~~~~ll~~~~~~~~~~~~~~~~~~g~t~~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~-------  102 (179)
                      .-+|||.|+..|+.++++.|++      .+..++.+|..|.| |||+||..|+.++++.|+..+.........       
T Consensus        37 ~~tPLh~A~~~g~~e~vk~Ll~------~gadvn~~d~~g~T-pLh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~l~~a~  109 (477)
T PHA02878         37 PFIPLHQAVEARNLDVVKSLLT------RGHNVNQPDHRDLT-PLHIICKEPNKLGMKEMIRSINKCSVFYTLVAIKDAF  109 (477)
T ss_pred             CcchHHHHHHcCCHHHHHHHHH------CCCCCCCCCCCCCC-HHHHHHHCccHhHHHHHHHHHhccccccchhhHHHHH
Confidence            4478999999999999999998      67788999999999 999999999988888888765332210000       


Q ss_pred             ---------------------------------------------hhhHHHHhccCC-CCcHHHHHHHcCCHHHHHHHHh
Q 042183          103 ---------------------------------------------LESGMIRMMNKE-KHTALHEAVFHKIVDVVKILTR  136 (179)
Q Consensus       103 ---------------------------------------------~~~~~~~~~~~~-g~t~l~~A~~~g~~~~~~~Ll~  136 (179)
                                                                   ..+..++.++.. |+||||+|+..|+.+++++|++
T Consensus       110 ~~~~~ei~~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~iv~~Ll~~gadin~~~~~~g~tpLh~A~~~~~~~iv~~Ll~  189 (477)
T PHA02878        110 NNRNVEIFKIILTNRYKNIQTIDLVYIDKKSKDDIIEAEITKLLLSYGADINMKDRHKGNTALHYATENKDQRLTELLLS  189 (477)
T ss_pred             HcCCHHHHHHHHhCcccCcccCcHHHHhhccchhhHHHHHHHHHHHcCCCCCccCCCCCCCHHHHHHhCCCHHHHHHHHH
Confidence                                                         011123445566 8999999999999999999999


Q ss_pred             cCCCCCCCCCCCCCCHHHHHHHhcCCHHHHHHHHhcCCCCCC
Q 042183          137 EDLDYPYSANNYNKTPLCMVAEYEHSSHMVVAILKNCTSVSH  178 (179)
Q Consensus       137 ~~~~~~~~~~~~g~tpl~~A~~~~~~~~~~~~Ll~~g~~~~~  178 (179)
                      .|++++ ..|..|.||||+|+. .|+.+++++|+++|++++.
T Consensus       190 ~gad~n-~~d~~g~tpLh~A~~-~~~~~iv~~Ll~~ga~in~  229 (477)
T PHA02878        190 YGANVN-IPDKTNNSPLHHAVK-HYNKPIVHILLENGASTDA  229 (477)
T ss_pred             CCCCCC-CcCCCCCCHHHHHHH-hCCHHHHHHHHHcCCCCCC
Confidence            999876 788899999999999 9999999999999988764

>KOG0509 consensus Ankyrin repeat and DHHC-type Zn-finger domain containing proteins [General function prediction only]

Probab=99.90  E-value=1.5e-23  Score=161.56  Aligned_cols=128  Identities=22%  Similarity=0.238  Sum_probs=104.5

Q ss_pred             HHHHHHHHcCChHHHHHHHHHHHHhhCcccccccCCCCCcHHHHHHHHcCCHHHHHHHHHhhcccCCchhhhhhHHHHhc
Q 042183           32 PNLFKAAAAGNLEPFKDMAREEILEICPSLLLQVNAKGDSRSLLVAAKFGHCDIVSVLIERAKLLQHEDEELESGMIRMM  111 (179)
Q Consensus        32 ~~l~~A~~~g~~~~~~~ll~~~~~~~~~~~~~~~~~~g~t~~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~~~~~~~~~  111 (179)
                      ..++.|++.|+++.++.+++     ..+..++..|.+|.+ +||+|+.+++.+++++|+++|++++.            .
T Consensus        46 ~~~v~A~q~G~l~~v~~lve-----~~g~~v~~~D~~g~t-lLHWAAiNNrl~v~r~li~~gadvn~------------~  107 (600)
T KOG0509|consen   46 DDIVKATQYGELETVKELVE-----SEGESVNNPDREGVT-LLHWAAINNRLDVARYLISHGADVNA------------I  107 (600)
T ss_pred             hhhhhHhhcchHHHHHHHHh-----hcCcCCCCCCcCCcc-ceeHHHHcCcHHHHHHHHHcCCCccc------------c
Confidence            45888888888888888876     236677778888888 88888888888888888888888776            5


Q ss_pred             c-CCCCcHHHHHHHcCCHHHHHHHHhcCCCCCCCCCCCCCCHHHHHHHhcCCHHHHHHHHhcCCCCCCC
Q 042183          112 N-KEKHTALHEAVFHKIVDVVKILTREDLDYPYSANNYNKTPLCMVAEYEHSSHMVVAILKNCTSVSHR  179 (179)
Q Consensus       112 ~-~~g~t~l~~A~~~g~~~~~~~Ll~~~~~~~~~~~~~g~tpl~~A~~~~~~~~~~~~Ll~~g~~~~~r  179 (179)
                      + .-+.||||+|+++|+..++++|+++|+|+. .+|.+|.+|+|+|++ .|+.-.+.+|+.+|+|++.|
T Consensus       108 gG~l~stPLHWAar~G~~~vv~lLlqhGAdpt-~~D~~G~~~lHla~~-~~~~~~vayll~~~~d~d~~  174 (600)
T KOG0509|consen  108 GGVLGSTPLHWAARNGHISVVDLLLQHGADPT-LKDKQGLTPLHLAAQ-FGHTALVAYLLSKGADIDLR  174 (600)
T ss_pred             CCCCCCCcchHHHHcCcHHHHHHHHHcCCCCc-eecCCCCcHHHHHHH-hCchHHHHHHHHhcccCCCc
Confidence            4 557788888888888888888888888876 888888888888888 88888888888888877654

>KOG0509 consensus Ankyrin repeat and DHHC-type Zn-finger domain containing proteins [General function prediction only]

Probab=99.90  E-value=1.4e-23  Score=161.75  Aligned_cols=129  Identities=22%  Similarity=0.181  Sum_probs=113.1

Q ss_pred             ccCCHHHHHHHHcCChHHHHHHHHHHHHhhCcccccccC-CCCCcHHHHHHHHcCCHHHHHHHHHhhcccCCchhhhhhH
Q 042183           28 LQIDPNLFKAAAAGNLEPFKDMAREEILEICPSLLLQVN-AKGDSRSLLVAAKFGHCDIVSVLIERAKLLQHEDEELESG  106 (179)
Q Consensus        28 ~~~~~~l~~A~~~g~~~~~~~ll~~~~~~~~~~~~~~~~-~~g~t~~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~~~~  106 (179)
                      ++.-+.||.|+.+++++++++|++      +++.+|... ..+.| |||+|+++|+..++.+|+++|++++.        
T Consensus        76 ~~g~tlLHWAAiNNrl~v~r~li~------~gadvn~~gG~l~st-PLHWAar~G~~~vv~lLlqhGAdpt~--------  140 (600)
T KOG0509|consen   76 REGVTLLHWAAINNRLDVARYLIS------HGADVNAIGGVLGST-PLHWAARNGHISVVDLLLQHGADPTL--------  140 (600)
T ss_pred             cCCccceeHHHHcCcHHHHHHHHH------cCCCccccCCCCCCC-cchHHHHcCcHHHHHHHHHcCCCCce--------
Confidence            345578999999999999999998      888999888 45566 99999999999999999999999988        


Q ss_pred             HHHhccCCCCcHHHHHHHcCCHHHHHHHHhcCCCCCCCCCCCCCCHHHHHHHhcCCHHHHHHHHhcCCCCC
Q 042183          107 MIRMMNKEKHTALHEAVFHKIVDVVKILTREDLDYPYSANNYNKTPLCMVAEYEHSSHMVVAILKNCTSVS  177 (179)
Q Consensus       107 ~~~~~~~~g~t~l~~A~~~g~~~~~~~Ll~~~~~~~~~~~~~g~tpl~~A~~~~~~~~~~~~Ll~~g~~~~  177 (179)
                          +|..|.+|+|.|+++|+.-.+-||+..++++. .+|.+|+|||++|+. +|+...+..|++.|+++.
T Consensus       141 ----~D~~G~~~lHla~~~~~~~~vayll~~~~d~d-~~D~~grTpLmwAay-kg~~~~v~~LL~f~a~~~  205 (600)
T KOG0509|consen  141 ----KDKQGLTPLHLAAQFGHTALVAYLLSKGADID-LRDNNGRTPLMWAAY-KGFALFVRRLLKFGASLL  205 (600)
T ss_pred             ----ecCCCCcHHHHHHHhCchHHHHHHHHhcccCC-CcCCCCCCHHHHHHH-hcccHHHHHHHHhccccc
Confidence                88899999999999999999999998888876 889999999999998 888877888888887654

>PHA02736 Viral ankyrin protein; Provisional

Probab=99.90  E-value=2.5e-23  Score=140.34  Aligned_cols=134  Identities=16%  Similarity=0.224  Sum_probs=109.3

Q ss_pred             ccCCHHHHHHHHcCChHHHHHHHHHHHHhhCcccccccCCCCCcHHHHHHHHcCCH---HHHHHHHHhhcccCCchhhhh
Q 042183           28 LQIDPNLFKAAAAGNLEPFKDMAREEILEICPSLLLQVNAKGDSRSLLVAAKFGHC---DIVSVLIERAKLLQHEDEELE  104 (179)
Q Consensus        28 ~~~~~~l~~A~~~g~~~~~~~ll~~~~~~~~~~~~~~~~~~g~t~~L~~A~~~g~~---~~v~~ll~~~~~~~~~~~~~~  104 (179)
                      ....+|||+|++.|++..+.... .......+..++..|..|.| |||+|+..|+.   +++++|+++|++.+.      
T Consensus        15 ~~g~tpLh~A~~~g~~~~l~~~~-~~~~~~~~~~~~~~d~~g~t-~Lh~a~~~~~~~~~e~v~~Ll~~gadin~------   86 (154)
T PHA02736         15 IEGENILHYLCRNGGVTDLLAFK-NAISDENRYLVLEYNRHGKQ-CVHIVSNPDKADPQEKLKLLMEWGADING------   86 (154)
T ss_pred             CCCCCHHHHHHHhCCHHHHHHHH-HHhcchhHHHHHHhcCCCCE-EEEeecccCchhHHHHHHHHHHcCCCccc------
Confidence            34679999999999853332211 11111223345667899999 99999999987   468899999998877      


Q ss_pred             hHHHHhcc-CCCCcHHHHHHHcCCHHHHHHHHhc-CCCCCCCCCCCCCCHHHHHHHhcCCHHHHHHHHhcCCCCC
Q 042183          105 SGMIRMMN-KEKHTALHEAVFHKIVDVVKILTRE-DLDYPYSANNYNKTPLCMVAEYEHSSHMVVAILKNCTSVS  177 (179)
Q Consensus       105 ~~~~~~~~-~~g~t~l~~A~~~g~~~~~~~Ll~~-~~~~~~~~~~~g~tpl~~A~~~~~~~~~~~~Ll~~g~~~~  177 (179)
                            ++ ..|+||||+|+..|+.+++++|+.. |++++ ..+..|.||||+|+. .|+.+++++|+++|++++
T Consensus        87 ------~~~~~g~T~Lh~A~~~~~~~i~~~Ll~~~g~d~n-~~~~~g~tpL~~A~~-~~~~~i~~~Ll~~ga~~~  153 (154)
T PHA02736         87 ------KERVFGNTPLHIAVYTQNYELATWLCNQPGVNME-ILNYAFKTPYYVACE-RHDAKMMNILRAKGAQCK  153 (154)
T ss_pred             ------cCCCCCCcHHHHHHHhCCHHHHHHHHhCCCCCCc-cccCCCCCHHHHHHH-cCCHHHHHHHHHcCCCCC
Confidence                  87 5899999999999999999999984 88876 899999999999999 999999999999998865

>PHA02874 ankyrin repeat protein; Provisional

Probab=99.90  E-value=1e-22  Score=158.36  Aligned_cols=142  Identities=17%  Similarity=0.164  Sum_probs=109.6

Q ss_pred             cccCCHHHHHHHHcCChHHHHHHHHHHHHhhCcccccccCCCCCcHHHHHHHHcCCHHHHHHHHHhhcccCCchh-----
Q 042183           27 QLQIDPNLFKAAAAGNLEPFKDMAREEILEICPSLLLQVNAKGDSRSLLVAAKFGHCDIVSVLIERAKLLQHEDE-----  101 (179)
Q Consensus        27 ~~~~~~~l~~A~~~g~~~~~~~ll~~~~~~~~~~~~~~~~~~g~t~~L~~A~~~g~~~~v~~ll~~~~~~~~~~~-----  101 (179)
                      .....+|||.|++.|+.++++.|++      .+..++..+..|.+ |||+|+..|+.+++++|+++|++......     
T Consensus        32 ~~~~~tpL~~A~~~g~~~iv~~Ll~------~Ga~~n~~~~~~~t-~L~~A~~~~~~~iv~~Ll~~g~~~~~~~~~~~~~  104 (434)
T PHA02874         32 VDETTTPLIDAIRSGDAKIVELFIK------HGADINHINTKIPH-PLLTAIKIGAHDIIKLLIDNGVDTSILPIPCIEK  104 (434)
T ss_pred             CCCCCCHHHHHHHcCCHHHHHHHHH------CCCCCCCCCCCCCC-HHHHHHHcCCHHHHHHHHHCCCCCCcchhccCCH
Confidence            3445699999999999999999987      67778888999999 99999999999999999999876543100     


Q ss_pred             h------hhhHHHHhccCCCCcHHHHHHHcCCHHHHHHHHhcCCCCCCCCCCCCCCHHHHHHHhcCCHHHHHHHHhcCCC
Q 042183          102 E------LESGMIRMMNKEKHTALHEAVFHKIVDVVKILTREDLDYPYSANNYNKTPLCMVAEYEHSSHMVVAILKNCTS  175 (179)
Q Consensus       102 ~------~~~~~~~~~~~~g~t~l~~A~~~g~~~~~~~Ll~~~~~~~~~~~~~g~tpl~~A~~~~~~~~~~~~Ll~~g~~  175 (179)
                      +      ..+..++.++..|.||||+|+..|+.+++++|++.|++++ ..|..|.||||+|+. .|+.+++++|+++|++
T Consensus       105 ~~i~~ll~~g~d~n~~~~~g~T~Lh~A~~~~~~~~v~~Ll~~gad~n-~~d~~g~tpLh~A~~-~~~~~iv~~Ll~~g~~  182 (434)
T PHA02874        105 DMIKTILDCGIDVNIKDAELKTFLHYAIKKGDLESIKMLFEYGADVN-IEDDNGCYPIHIAIK-HNFFDIIKLLLEKGAY  182 (434)
T ss_pred             HHHHHHHHCcCCCCCCCCCCccHHHHHHHCCCHHHHHHHHhCCCCCC-CcCCCCCCHHHHHHH-CCcHHHHHHHHHCCCC
Confidence            0      1112234466677788888888888888888887777765 677777788888777 7777777777777776


Q ss_pred             CC
Q 042183          176 VS  177 (179)
Q Consensus       176 ~~  177 (179)
                      ++
T Consensus       183 ~n  184 (434)
T PHA02874        183 AN  184 (434)
T ss_pred             CC
Confidence            54

>PHA02874 ankyrin repeat protein; Provisional

Probab=99.90  E-value=3.1e-22  Score=155.67  Aligned_cols=135  Identities=18%  Similarity=0.195  Sum_probs=119.0

Q ss_pred             cCCHHHHHHHHcCChHHHHHHHHHH-----------------HHhhCcccccccCCCCCcHHHHHHHHcCCHHHHHHHHH
Q 042183           29 QIDPNLFKAAAAGNLEPFKDMAREE-----------------ILEICPSLLLQVNAKGDSRSLLVAAKFGHCDIVSVLIE   91 (179)
Q Consensus        29 ~~~~~l~~A~~~g~~~~~~~ll~~~-----------------~~~~~~~~~~~~~~~g~t~~L~~A~~~g~~~~v~~ll~   91 (179)
                      ...+|||.|+..|+.++++.|++.+                 .+-..+..++.++..|.| |||+|+..|+.+++++|++
T Consensus        67 ~~~t~L~~A~~~~~~~iv~~Ll~~g~~~~~~~~~~~~~~~i~~ll~~g~d~n~~~~~g~T-~Lh~A~~~~~~~~v~~Ll~  145 (434)
T PHA02874         67 KIPHPLLTAIKIGAHDIIKLLIDNGVDTSILPIPCIEKDMIKTILDCGIDVNIKDAELKT-FLHYAIKKGDLESIKMLFE  145 (434)
T ss_pred             CCCCHHHHHHHcCCHHHHHHHHHCCCCCCcchhccCCHHHHHHHHHCcCCCCCCCCCCcc-HHHHHHHCCCHHHHHHHHh
Confidence            3568999999999999999998721                 111234567778899999 9999999999999999999


Q ss_pred             hhcccCCchhhhhhHHHHhccCCCCcHHHHHHHcCCHHHHHHHHhcCCCCCCCCCCCCCCHHHHHHHhcCCHHHHHHHHh
Q 042183           92 RAKLLQHEDEELESGMIRMMNKEKHTALHEAVFHKIVDVVKILTREDLDYPYSANNYNKTPLCMVAEYEHSSHMVVAILK  171 (179)
Q Consensus        92 ~~~~~~~~~~~~~~~~~~~~~~~g~t~l~~A~~~g~~~~~~~Ll~~~~~~~~~~~~~g~tpl~~A~~~~~~~~~~~~Ll~  171 (179)
                      +|++++.            ++..|.||||+|+..|+.+++++|++.|++++ ..+..|.||||+|+. .|+.+++++|++
T Consensus       146 ~gad~n~------------~d~~g~tpLh~A~~~~~~~iv~~Ll~~g~~~n-~~~~~g~tpL~~A~~-~g~~~iv~~Ll~  211 (434)
T PHA02874        146 YGADVNI------------EDDNGCYPIHIAIKHNFFDIIKLLLEKGAYAN-VKDNNGESPLHNAAE-YGDYACIKLLID  211 (434)
T ss_pred             CCCCCCC------------cCCCCCCHHHHHHHCCcHHHHHHHHHCCCCCC-CCCCCCCCHHHHHHH-cCCHHHHHHHHh
Confidence            9998877            89999999999999999999999999999976 789999999999999 999999999999


Q ss_pred             cCCCCCC
Q 042183          172 NCTSVSH  178 (179)
Q Consensus       172 ~g~~~~~  178 (179)
                      .|++++.
T Consensus       212 ~g~~i~~  218 (434)
T PHA02874        212 HGNHIMN  218 (434)
T ss_pred             CCCCCcC
Confidence            9988653

>PLN03192 Voltage-dependent potassium channel; Provisional

Probab=99.90  E-value=1.4e-22  Score=167.90  Aligned_cols=129  Identities=24%  Similarity=0.271  Sum_probs=111.3

Q ss_pred             cCCHHHHHHHHcCChHHHHHHHHHHHHhhCcccccccCCCCCcHHHHHHHHcCCHHHHHHHHHhhcccCCchhhhhhHHH
Q 042183           29 QIDPNLFKAAAAGNLEPFKDMAREEILEICPSLLLQVNAKGDSRSLLVAAKFGHCDIVSVLIERAKLLQHEDEELESGMI  108 (179)
Q Consensus        29 ~~~~~l~~A~~~g~~~~~~~ll~~~~~~~~~~~~~~~~~~g~t~~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~~~~~~  108 (179)
                      ...++|+.|+..|+.+.++.|++      .+.+++..|..|.| |||+|+..|+.+++++|+++|++++.          
T Consensus       524 ~~~~~L~~Aa~~g~~~~l~~Ll~------~G~d~n~~d~~G~T-pLh~Aa~~g~~~~v~~Ll~~gadin~----------  586 (823)
T PLN03192        524 NMASNLLTVASTGNAALLEELLK------AKLDPDIGDSKGRT-PLHIAASKGYEDCVLVLLKHACNVHI----------  586 (823)
T ss_pred             cchhHHHHHHHcCCHHHHHHHHH------CCCCCCCCCCCCCC-HHHHHHHcChHHHHHHHHhcCCCCCC----------
Confidence            35688999999999999999987      66778889999999 99999999999999999999998877          


Q ss_pred             HhccCCCCcHHH-------------------------------HHHHcCCHHHHHHHHhcCCCCCCCCCCCCCCHHHHHH
Q 042183          109 RMMNKEKHTALH-------------------------------EAVFHKIVDVVKILTREDLDYPYSANNYNKTPLCMVA  157 (179)
Q Consensus       109 ~~~~~~g~t~l~-------------------------------~A~~~g~~~~~~~Ll~~~~~~~~~~~~~g~tpl~~A~  157 (179)
                        +|.+|+||||                               .|+..|+.+++++|+++|++++ ..|..|.||||+|+
T Consensus       587 --~d~~G~TpL~~A~~~g~~~iv~~L~~~~~~~~~~~~~~~L~~Aa~~g~~~~v~~Ll~~Gadin-~~d~~G~TpLh~A~  663 (823)
T PLN03192        587 --RDANGNTALWNAISAKHHKIFRILYHFASISDPHAAGDLLCTAAKRNDLTAMKELLKQGLNVD-SEDHQGATALQVAM  663 (823)
T ss_pred             --cCCCCCCHHHHHHHhCCHHHHHHHHhcCcccCcccCchHHHHHHHhCCHHHHHHHHHCCCCCC-CCCCCCCCHHHHHH
Confidence              6666666665                               5555666667777888899986 89999999999999


Q ss_pred             HhcCCHHHHHHHHhcCCCCCC
Q 042183          158 EYEHSSHMVVAILKNCTSVSH  178 (179)
Q Consensus       158 ~~~~~~~~~~~Ll~~g~~~~~  178 (179)
                      . .|+.+++++|+++|++++.
T Consensus       664 ~-~g~~~iv~~Ll~~GAdv~~  683 (823)
T PLN03192        664 A-EDHVDMVRLLIMNGADVDK  683 (823)
T ss_pred             H-CCcHHHHHHHHHcCCCCCC
Confidence            9 9999999999999999864

>PHA02859 ankyrin repeat protein; Provisional

Probab=99.90  E-value=2.5e-22  Score=141.78  Aligned_cols=128  Identities=15%  Similarity=0.181  Sum_probs=110.8

Q ss_pred             ccCCHHHHHHHHcCChHHHHHHHHHHHHhhCcccccccCCCCCcHHHHHHHHcC--CHHHHHHHHHhhcccCCchhhhhh
Q 042183           28 LQIDPNLFKAAAAGNLEPFKDMAREEILEICPSLLLQVNAKGDSRSLLVAAKFG--HCDIVSVLIERAKLLQHEDEELES  105 (179)
Q Consensus        28 ~~~~~~l~~A~~~g~~~~~~~ll~~~~~~~~~~~~~~~~~~g~t~~L~~A~~~g--~~~~v~~ll~~~~~~~~~~~~~~~  105 (179)
                      ....+||+.|+..|+++.|+.|++         .++..|..|.| |||+|+..+  +.+++++|+++|++++.       
T Consensus        19 ~~~~~pL~~A~~~~~~~~vk~Li~---------~~n~~~~~g~T-pLh~a~~~~~~~~eiv~~Ll~~gadvn~-------   81 (209)
T PHA02859         19 YRYCNPLFYYVEKDDIEGVKKWIK---------FVNDCNDLYET-PIFSCLEKDKVNVEILKFLIENGADVNF-------   81 (209)
T ss_pred             hccCcHHHHHHHhCcHHHHHHHHH---------hhhccCccCCC-HHHHHHHcCCCCHHHHHHHHHCCCCCCc-------
Confidence            334688999999999999999986         24667889999 999999865  89999999999998877       


Q ss_pred             HHHHhcc-CCCCcHHHHHHHc---CCHHHHHHHHhcCCCCCCCCCCCCCCHHHHHHHh-cCCHHHHHHHHhcCCCCCC
Q 042183          106 GMIRMMN-KEKHTALHEAVFH---KIVDVVKILTREDLDYPYSANNYNKTPLCMVAEY-EHSSHMVVAILKNCTSVSH  178 (179)
Q Consensus       106 ~~~~~~~-~~g~t~l~~A~~~---g~~~~~~~Ll~~~~~~~~~~~~~g~tpl~~A~~~-~~~~~~~~~Ll~~g~~~~~  178 (179)
                           ++ ..|+||||+|+..   ++.+++++|+++|++++ .+|..|.||||+|+.. .++.+++++|+++|++++.
T Consensus        82 -----~~~~~g~TpLh~a~~~~~~~~~eiv~~Ll~~gadin-~~d~~G~TpLh~a~~~~~~~~~iv~~Li~~gadin~  153 (209)
T PHA02859         82 -----KTRDNNLSALHHYLSFNKNVEPEILKILIDSGSSIT-EEDEDGKNLLHMYMCNFNVRINVIKLLIDSGVSFLN  153 (209)
T ss_pred             -----cCCCCCCCHHHHHHHhCccccHHHHHHHHHCCCCCC-CcCCCCCCHHHHHHHhccCCHHHHHHHHHcCCCccc
Confidence                 76 4799999998764   47999999999999987 8999999999999861 3689999999999998753

>KOG0512 consensus Fetal globin-inducing factor (contains ankyrin repeats) [Transcription]

Probab=99.89  E-value=9e-23  Score=134.55  Aligned_cols=123  Identities=22%  Similarity=0.161  Sum_probs=109.4

Q ss_pred             CHHHHHHHHcCChHHHHHHHHHHHHhhCcccccccCCCCCcHHHHHHHHcCCHHHHHHHHHhhcccCCchhhhhhHHHHh
Q 042183           31 DPNLFKAAAAGNLEPFKDMAREEILEICPSLLLQVNAKGDSRSLLVAAKFGHCDIVSVLIERAKLLQHEDEELESGMIRM  110 (179)
Q Consensus        31 ~~~l~~A~~~g~~~~~~~ll~~~~~~~~~~~~~~~~~~g~t~~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~~~~~~~~  110 (179)
                      ...+..|+..+.+..|+.|++     ..+..+|.+|.+|+| |||.|+.+|+.+|++.|+..|+++..            
T Consensus        64 ~rl~lwaae~nrl~eV~~lL~-----e~an~vNtrD~D~YT-pLHRAaYn~h~div~~ll~~gAn~~a------------  125 (228)
T KOG0512|consen   64 IRLLLWAAEKNRLTEVQRLLS-----EKANHVNTRDEDEYT-PLHRAAYNGHLDIVHELLLSGANKEA------------  125 (228)
T ss_pred             HHHHHHHHhhccHHHHHHHHH-----hcccccccccccccc-HHHHHHhcCchHHHHHHHHccCCccc------------
Confidence            355889999999999999987     577789999999999 99999999999999999999999988            


Q ss_pred             ccCCCCcHHHHHHHcCCHHHHHHHHhcCCCCCCCCCCCCCCHHHHHHHhcCCHHHHHHHHhc
Q 042183          111 MNKEKHTALHEAVFHKIVDVVKILTREDLDYPYSANNYNKTPLCMVAEYEHSSHMVVAILKN  172 (179)
Q Consensus       111 ~~~~g~t~l~~A~~~g~~~~~~~Ll~~~~~~~~~~~~~g~tpl~~A~~~~~~~~~~~~Ll~~  172 (179)
                      +...||||||-||...+.+|+.+|+++|+|++ ....-..||||+|+..++....+.+|+..
T Consensus       126 ~T~~GWTPLhSAckWnN~~va~~LLqhgaDVn-A~t~g~ltpLhlaa~~rn~r~t~~~Ll~d  186 (228)
T KOG0512|consen  126 KTNEGWTPLHSACKWNNFEVAGRLLQHGADVN-AQTKGLLTPLHLAAGNRNSRDTLELLLHD  186 (228)
T ss_pred             ccccCccchhhhhcccchhHHHHHHhccCccc-ccccccchhhHHhhcccchHHHHHHHhhc
Confidence            99999999999999999999999999999997 67777889999999835555666776653

>PHA02878 ankyrin repeat protein; Provisional

Probab=99.89  E-value=4.5e-22  Score=156.46  Aligned_cols=126  Identities=19%  Similarity=0.140  Sum_probs=114.2

Q ss_pred             CCHHHHHHHHcCChHHHHHHHHHHHHhhCcccccccCCCCCcHHHHHHHHcCCHHHHHHHHHhhcccCCchhhhhhHHHH
Q 042183           30 IDPNLFKAAAAGNLEPFKDMAREEILEICPSLLLQVNAKGDSRSLLVAAKFGHCDIVSVLIERAKLLQHEDEELESGMIR  109 (179)
Q Consensus        30 ~~~~l~~A~~~g~~~~~~~ll~~~~~~~~~~~~~~~~~~g~t~~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~~~~~~~  109 (179)
                      ..+|||.|+..|+.++++.|++      .+..++..|..|.| |||+|+..|+.+++++|++.|++++.           
T Consensus       168 g~tpLh~A~~~~~~~iv~~Ll~------~gad~n~~d~~g~t-pLh~A~~~~~~~iv~~Ll~~ga~in~-----------  229 (477)
T PHA02878        168 GNTALHYATENKDQRLTELLLS------YGANVNIPDKTNNS-PLHHAVKHYNKPIVHILLENGASTDA-----------  229 (477)
T ss_pred             CCCHHHHHHhCCCHHHHHHHHH------CCCCCCCcCCCCCC-HHHHHHHhCCHHHHHHHHHcCCCCCC-----------
Confidence            5689999999999999999988      67788899999999 99999999999999999999998887           


Q ss_pred             hccCCCCcHHHHHHHc-CCHHHHHHHHhcCCCCCCCCC-CCCCCHHHHHHHhcCCHHHHHHHHhcCCCCCC
Q 042183          110 MMNKEKHTALHEAVFH-KIVDVVKILTREDLDYPYSAN-NYNKTPLCMVAEYEHSSHMVVAILKNCTSVSH  178 (179)
Q Consensus       110 ~~~~~g~t~l~~A~~~-g~~~~~~~Ll~~~~~~~~~~~-~~g~tpl~~A~~~~~~~~~~~~Ll~~g~~~~~  178 (179)
                       ++..|.||||+|+.. ++.+++++|++.|++++ ..+ ..|.||||+|+.   +.+++++|+++|+|++.
T Consensus       230 -~d~~g~TpLh~A~~~~~~~~iv~~Ll~~gadvn-~~~~~~g~TpLh~A~~---~~~~v~~Ll~~gadin~  295 (477)
T PHA02878        230 -RDKCGNTPLHISVGYCKDYDILKLLLEHGVDVN-AKSYILGLTALHSSIK---SERKLKLLLEYGADINS  295 (477)
T ss_pred             -CCCCCCCHHHHHHHhcCCHHHHHHHHHcCCCCC-ccCCCCCCCHHHHHcc---CHHHHHHHHHCCCCCCC
Confidence             999999999999976 78999999999999987 555 479999999954   68999999999999874

>PHA03100 ankyrin repeat protein; Provisional

Probab=99.89  E-value=5.2e-22  Score=156.19  Aligned_cols=141  Identities=20%  Similarity=0.205  Sum_probs=107.4

Q ss_pred             ccCCHHHHHHHHcC--ChHHHHHHHHHHHHhhCcccccccCCCCCcHHHHHHHHcCCHHHHHHHHHhhcccCCchh----
Q 042183           28 LQIDPNLFKAAAAG--NLEPFKDMAREEILEICPSLLLQVNAKGDSRSLLVAAKFGHCDIVSVLIERAKLLQHEDE----  101 (179)
Q Consensus        28 ~~~~~~l~~A~~~g--~~~~~~~ll~~~~~~~~~~~~~~~~~~g~t~~L~~A~~~g~~~~v~~ll~~~~~~~~~~~----  101 (179)
                      ....++||.|+..|  +.++++.|++      .+..++..+..|.| |||+|+..|+.+++++|+++|++++....    
T Consensus       139 ~~g~t~L~~A~~~~~~~~~iv~~Ll~------~g~din~~d~~g~t-pL~~A~~~~~~~iv~~Ll~~ga~~~~~~~~~~~  211 (480)
T PHA03100        139 SDGENLLHLYLESNKIDLKILKLLID------KGVDINAKNRYGYT-PLHIAVEKGNIDVIKFLLDNGADINAGDIETLL  211 (480)
T ss_pred             CCCCcHHHHHHHcCCChHHHHHHHHH------CCCCcccccCCCCC-HHHHHHHhCCHHHHHHHHHcCCCccCCCCCCCc
Confidence            34557888888888  8888888877      56677888888999 99999999999999999999887764210    


Q ss_pred             -----h--------------------hhhHHHHhccCCCCcHHHHHHHcCCHHHHHHHHhcCCCCCCCCCCCCCCHHHHH
Q 042183          102 -----E--------------------LESGMIRMMNKEKHTALHEAVFHKIVDVVKILTREDLDYPYSANNYNKTPLCMV  156 (179)
Q Consensus       102 -----~--------------------~~~~~~~~~~~~g~t~l~~A~~~g~~~~~~~Ll~~~~~~~~~~~~~g~tpl~~A  156 (179)
                           .                    ..+..++.+|..|.||||+|+..|+.+++++|++.|++++ ..|..|.||+++|
T Consensus       212 ~~~~~t~l~~a~~~~~~~~~iv~~Ll~~g~din~~d~~g~TpL~~A~~~~~~~iv~~Ll~~gad~n-~~d~~g~tpl~~A  290 (480)
T PHA03100        212 FTIFETPLHIAACYNEITLEVVNYLLSYGVPINIKDVYGFTPLHYAVYNNNPEFVKYLLDLGANPN-LVNKYGDTPLHIA  290 (480)
T ss_pred             HHHHHhHHHHHHHhCcCcHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCC-ccCCCCCcHHHHH
Confidence                 0                    1112335566778888888888888888888888888765 7778888888888


Q ss_pred             HHhcCCHHHHHHHHhcCCCCC
Q 042183          157 AEYEHSSHMVVAILKNCTSVS  177 (179)
Q Consensus       157 ~~~~~~~~~~~~Ll~~g~~~~  177 (179)
                      +. .++.+++++|+++|++++
T Consensus       291 ~~-~~~~~iv~~Ll~~g~~i~  310 (480)
T PHA03100        291 IL-NNNKEIFKLLLNNGPSIK  310 (480)
T ss_pred             HH-hCCHHHHHHHHhcCCCHH
Confidence            88 888888888888887654

>KOG0508 consensus Ankyrin repeat protein [General function prediction only]

Probab=99.88  E-value=9.9e-23  Score=152.48  Aligned_cols=125  Identities=28%  Similarity=0.308  Sum_probs=112.0

Q ss_pred             CCHHHHHHHHcCChHHHHHHHHHHHHhhCcccccccCCCCCcHHHHHHHHcCCHHHHHHHHHhhcccCCchhhhhhHHHH
Q 042183           30 IDPNLFKAAAAGNLEPFKDMAREEILEICPSLLLQVNAKGDSRSLLVAAKFGHCDIVSVLIERAKLLQHEDEELESGMIR  109 (179)
Q Consensus        30 ~~~~l~~A~~~g~~~~~~~ll~~~~~~~~~~~~~~~~~~g~t~~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~~~~~~~  109 (179)
                      ..+||..|+..|++++|+.|++      .+..+|.......| ||.-||..|+.+++++|+++++++..           
T Consensus        84 gappLWaAsaAGHl~vVk~L~~------~ga~VN~tT~TNSt-PLraACfDG~leivKyLvE~gad~~I-----------  145 (615)
T KOG0508|consen   84 GAPPLWAASAAGHLEVVKLLLR------RGASVNDTTRTNST-PLRAACFDGHLEIVKYLVEHGADPEI-----------  145 (615)
T ss_pred             CCchhhHHhccCcHHHHHHHHH------hcCccccccccCCc-cHHHHHhcchhHHHHHHHHcCCCCcc-----------
Confidence            4578999999999999999987      55778877777778 99999999999999999999998877           


Q ss_pred             hccCCCCcHHHHHHHcCCHHHHHHHHhcCCCCCCCCCCCCCCHHHHHHHhcCCHHHHHHHHhcCCC
Q 042183          110 MMNKEKHTALHEAVFHKIVDVVKILTREDLDYPYSANNYNKTPLCMVAEYEHSSHMVVAILKNCTS  175 (179)
Q Consensus       110 ~~~~~g~t~l~~A~~~g~~~~~~~Ll~~~~~~~~~~~~~g~tpl~~A~~~~~~~~~~~~Ll~~g~~  175 (179)
                       .|..|.|.||+||..||.+++++|++.|+|++ .++..|.|+||.|++ .|+.+++++|+.+|+.
T Consensus       146 -anrhGhTcLmIa~ykGh~~I~qyLle~gADvn-~ks~kGNTALH~caE-sG~vdivq~Ll~~ga~  208 (615)
T KOG0508|consen  146 -ANRHGHTCLMIACYKGHVDIAQYLLEQGADVN-AKSYKGNTALHDCAE-SGSVDIVQLLLKHGAK  208 (615)
T ss_pred             -cccCCCeeEEeeeccCchHHHHHHHHhCCCcc-hhcccCchHHHhhhh-cccHHHHHHHHhCCce
Confidence             89999999999999999999999999999987 889999999999999 9999999999998853

>KOG0510 consensus Ankyrin repeat protein [General function prediction only]

Probab=99.88  E-value=3.1e-22  Score=157.91  Aligned_cols=151  Identities=18%  Similarity=0.213  Sum_probs=100.1

Q ss_pred             CccccCCHHHHHHHHcCChHHHHHHHHH-------H--HHhhCcccccccCCCCCcHHHHHHHHcCCHHHHHHHHHhhcc
Q 042183           25 ISQLQIDPNLFKAAAAGNLEPFKDMARE-------E--ILEICPSLLLQVNAKGDSRSLLVAAKFGHCDIVSVLIERAKL   95 (179)
Q Consensus        25 ~~~~~~~~~l~~A~~~g~~~~~~~ll~~-------~--~~~~~~~~~~~~~~~g~t~~L~~A~~~g~~~~v~~ll~~~~~   95 (179)
                      +...+..+|||.|++.|+++.++.++++       |  .-......++..|.+|.| |||+||+.|+.++++.|+..|+.
T Consensus       220 ~~~n~~~~pLhlAve~g~~e~lk~~L~n~~~~a~~~~~~~~q~kelv~~~d~dg~t-pLH~a~r~G~~~svd~Ll~~Ga~  298 (929)
T KOG0510|consen  220 FDNNEKATPLHLAVEGGDIEMLKMCLQNGKKIADVQLDAMQQEKELVNDEDNDGCT-PLHYAARQGGPESVDNLLGFGAS  298 (929)
T ss_pred             cccCCCCcchhhhhhcCCHHHHHHHHhCccccchhhhHHHHHHHHHhhcccccCCc-hHHHHHHcCChhHHHHHHHcCCc
Confidence            4445566889999999999999999882       2  111233457778999999 99999999999999999999988


Q ss_pred             cCCchhh--------------------hh-h--HHHHhccCCCCcHHHHHHHcCCHHHHHHHHhcCCCCCC--CCCCCCC
Q 042183           96 LQHEDEE--------------------LE-S--GMIRMMNKEKHTALHEAVFHKIVDVVKILTREDLDYPY--SANNYNK  150 (179)
Q Consensus        96 ~~~~~~~--------------------~~-~--~~~~~~~~~g~t~l~~A~~~g~~~~~~~Ll~~~~~~~~--~~~~~g~  150 (179)
                      ++.+.+.                    +. .  -.++..|-.|.||||.|++.||..+++.|++.|+...+  ..|..|.
T Consensus       299 I~~kn~d~~spLH~AA~yg~~ntv~rLL~~~~~rllne~D~~g~tpLHlaa~~gH~~v~qlLl~~GA~~~~~~e~D~dg~  378 (929)
T KOG0510|consen  299 INSKNKDEESPLHFAAIYGRINTVERLLQESDTRLLNESDLHGMTPLHLAAKSGHDRVVQLLLNKGALFLNMSEADSDGN  378 (929)
T ss_pred             ccccCCCCCCchHHHHHcccHHHHHHHHhCcCccccccccccCCCchhhhhhcCHHHHHHHHHhcChhhhcccccccCCc
Confidence            8772221                    00 0  12234445566666666666666666666666665432  2366666


Q ss_pred             CHHHHHHHhcCCHHHHHHHHhcCCCCC
Q 042183          151 TPLCMVAEYEHSSHMVVAILKNCTSVS  177 (179)
Q Consensus       151 tpl~~A~~~~~~~~~~~~Ll~~g~~~~  177 (179)
                      ||||.|+. .|+..++++|+.+|+++.
T Consensus       379 TaLH~Aa~-~g~~~av~~Li~~Ga~I~  404 (929)
T KOG0510|consen  379 TALHLAAK-YGNTSAVQKLISHGADIG  404 (929)
T ss_pred             hhhhHHHH-hccHHHHHHHHHcCCcee
Confidence            66666666 666666666666666553

>PHA03100 ankyrin repeat protein; Provisional

Probab=99.88  E-value=1.3e-21  Score=154.03  Aligned_cols=126  Identities=20%  Similarity=0.239  Sum_probs=95.6

Q ss_pred             CHHHHH-----HHHcCChHHHHHHHHHHHHhhCcccccccCCCCCcHHHHHHH--HcCCHHHHHHHHHhhcccCCchhhh
Q 042183           31 DPNLFK-----AAAAGNLEPFKDMAREEILEICPSLLLQVNAKGDSRSLLVAA--KFGHCDIVSVLIERAKLLQHEDEEL  103 (179)
Q Consensus        31 ~~~l~~-----A~~~g~~~~~~~ll~~~~~~~~~~~~~~~~~~g~t~~L~~A~--~~g~~~~v~~ll~~~~~~~~~~~~~  103 (179)
                      .++||.     |+..|+.++++.|++      .+..++..+..|.| |||+|+  ..|+.+++++|+++|++.+.     
T Consensus        69 ~t~L~~~~~~~a~~~~~~~iv~~Ll~------~ga~i~~~d~~g~t-pL~~A~~~~~~~~~iv~~Ll~~g~~~~~-----  136 (480)
T PHA03100         69 STPLHYLSNIKYNLTDVKEIVKLLLE------YGANVNAPDNNGIT-PLLYAISKKSNSYSIVEYLLDNGANVNI-----  136 (480)
T ss_pred             cCHHHHHHHHHHHhhchHHHHHHHHH------CCCCCCCCCCCCCc-hhhHHHhcccChHHHHHHHHHcCCCCCc-----
Confidence            355666     666666666655554      44555666677777 777777  77777777777777766655     


Q ss_pred             hhHHHHhccCCCCcHHHHHHHcC--CHHHHHHHHhcCCCCCCCCCCCCCCHHHHHHHhcCCHHHHHHHHhcCCCCC
Q 042183          104 ESGMIRMMNKEKHTALHEAVFHK--IVDVVKILTREDLDYPYSANNYNKTPLCMVAEYEHSSHMVVAILKNCTSVS  177 (179)
Q Consensus       104 ~~~~~~~~~~~g~t~l~~A~~~g--~~~~~~~Ll~~~~~~~~~~~~~g~tpl~~A~~~~~~~~~~~~Ll~~g~~~~  177 (179)
                             .+..|.||||.|+..|  +.+++++|++.|++++ ..+..|.||||+|+. .|+.+++++|+++|++++
T Consensus       137 -------~~~~g~t~L~~A~~~~~~~~~iv~~Ll~~g~din-~~d~~g~tpL~~A~~-~~~~~iv~~Ll~~ga~~~  203 (480)
T PHA03100        137 -------KNSDGENLLHLYLESNKIDLKILKLLIDKGVDIN-AKNRYGYTPLHIAVE-KGNIDVIKFLLDNGADIN  203 (480)
T ss_pred             -------cCCCCCcHHHHHHHcCCChHHHHHHHHHCCCCcc-cccCCCCCHHHHHHH-hCCHHHHHHHHHcCCCcc
Confidence                   7788888888888888  8888888888888876 677788889998888 888888888888888765

>PHA02884 ankyrin repeat protein; Provisional

Probab=99.88  E-value=2.6e-21  Score=142.02  Aligned_cols=126  Identities=16%  Similarity=0.134  Sum_probs=109.6

Q ss_pred             cccCCHHHHHHHHcCChHHHHHHHHHHHHhhCccccccc----CCCCCcHHHHHHHHcCCHHHHHHHHHhhcccCCchhh
Q 042183           27 QLQIDPNLFKAAAAGNLEPFKDMAREEILEICPSLLLQV----NAKGDSRSLLVAAKFGHCDIVSVLIERAKLLQHEDEE  102 (179)
Q Consensus        27 ~~~~~~~l~~A~~~g~~~~~~~ll~~~~~~~~~~~~~~~----~~~g~t~~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~  102 (179)
                      .....++||.|++.|+.++++.|++      .+..++.+    +..|.| |||+|+..++.+++++|+++|++++.    
T Consensus        30 ~~~~~~lL~~A~~~~~~eivk~LL~------~GAdiN~~~~~sd~~g~T-pLh~Aa~~~~~eivklLL~~GADVN~----   98 (300)
T PHA02884         30 KICIANILYSSIKFHYTDIIDAILK------LGADPEAPFPLSENSKTN-PLIYAIDCDNDDAAKLLIRYGADVNR----   98 (300)
T ss_pred             cCCCCHHHHHHHHcCCHHHHHHHHH------CCCCccccCcccCCCCCC-HHHHHHHcCCHHHHHHHHHcCCCcCc----
Confidence            4456688999999999999999998      66777776    358999 99999999999999999999998876    


Q ss_pred             hhhHHHHhc-cCCCCcHHHHHHHcCCHHHHHHHHhcCCCCCCCCCCCCCCHHHHHHHhcCCHHHHHHHHhcC
Q 042183          103 LESGMIRMM-NKEKHTALHEAVFHKIVDVVKILTREDLDYPYSANNYNKTPLCMVAEYEHSSHMVVAILKNC  173 (179)
Q Consensus       103 ~~~~~~~~~-~~~g~t~l~~A~~~g~~~~~~~Ll~~~~~~~~~~~~~g~tpl~~A~~~~~~~~~~~~Ll~~g  173 (179)
                              + +..|.||||.|+..|+.+++++|+..|++++ .+|..|.||||+|+. .++.+++..+..++
T Consensus        99 --------~~~~~g~TpLh~Aa~~~~~eivklLL~~GAdin-~kd~~G~TpL~~A~~-~~~~~~~~~~~~~~  160 (300)
T PHA02884         99 --------YAEEAKITPLYISVLHGCLKCLEILLSYGADIN-IQTNDMVTPIELALM-ICNNFLAFMICDNE  160 (300)
T ss_pred             --------ccCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCC-CCCCCCCCHHHHHHH-hCChhHHHHhcCCc
Confidence                    5 4579999999999999999999999999987 899999999999999 88777765554433

>KOG0510 consensus Ankyrin repeat protein [General function prediction only]

Probab=99.87  E-value=7e-22  Score=155.89  Aligned_cols=109  Identities=25%  Similarity=0.288  Sum_probs=74.6

Q ss_pred             HHHHHHHHcCChHHHHHHHHHHHHhhCcccccccCCCCCcHHHHHHHHcCCHHHHHHHHHhhcccCCchhhhhhHHHHhc
Q 042183           32 PNLFKAAAAGNLEPFKDMAREEILEICPSLLLQVNAKGDSRSLLVAAKFGHCDIVSVLIERAKLLQHEDEELESGMIRMM  111 (179)
Q Consensus        32 ~~l~~A~~~g~~~~~~~ll~~~~~~~~~~~~~~~~~~g~t~~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~~~~~~~~~  111 (179)
                      +|||.|+..|++.+|+.|++    +.+...++..|..|.| |||.|+.+||.++++.|+++|+....         ....
T Consensus       308 spLH~AA~yg~~ntv~rLL~----~~~~rllne~D~~g~t-pLHlaa~~gH~~v~qlLl~~GA~~~~---------~~e~  373 (929)
T KOG0510|consen  308 SPLHFAAIYGRINTVERLLQ----ESDTRLLNESDLHGMT-PLHLAAKSGHDRVVQLLLNKGALFLN---------MSEA  373 (929)
T ss_pred             CchHHHHHcccHHHHHHHHh----CcCccccccccccCCC-chhhhhhcCHHHHHHHHHhcChhhhc---------cccc
Confidence            44444444444444444443    1233345556666666 66666666666666666666654331         0135


Q ss_pred             cCCCCcHHHHHHHcCCHHHHHHHHhcCCCCCCCCCCCCCCHHHH
Q 042183          112 NKEKHTALHEAVFHKIVDVVKILTREDLDYPYSANNYNKTPLCM  155 (179)
Q Consensus       112 ~~~g~t~l~~A~~~g~~~~~~~Ll~~~~~~~~~~~~~g~tpl~~  155 (179)
                      |.+|.||||.|+.+|+..++++|+.+|+++. .+|..|.+++++
T Consensus       374 D~dg~TaLH~Aa~~g~~~av~~Li~~Ga~I~-~~n~~g~SA~~~  416 (929)
T KOG0510|consen  374 DSDGNTALHLAAKYGNTSAVQKLISHGADIG-VKNKKGKSAFDT  416 (929)
T ss_pred             ccCCchhhhHHHHhccHHHHHHHHHcCCcee-eccccccccccc
Confidence            9999999999999999999999999999986 789999999985

>PHA02716 CPXV016; CPX019; EVM010; Provisional

Probab=99.87  E-value=4.5e-21  Score=154.93  Aligned_cols=69  Identities=14%  Similarity=0.245  Sum_probs=59.1

Q ss_pred             HhccCCCCcHHHHHHH--cCCHHHHHHHHhcCCCCCCCCCCCCCCHHHHHHHh-------------cCCHHHHHHHHhcC
Q 042183          109 RMMNKEKHTALHEAVF--HKIVDVVKILTREDLDYPYSANNYNKTPLCMVAEY-------------EHSSHMVVAILKNC  173 (179)
Q Consensus       109 ~~~~~~g~t~l~~A~~--~g~~~~~~~Ll~~~~~~~~~~~~~g~tpl~~A~~~-------------~~~~~~~~~Ll~~g  173 (179)
                      +.+|..|+||||+|+.  .++.+++++|++.|++++ .+|..|+||||+|+..             .++.+++++|+++|
T Consensus       311 N~kD~~G~TPLH~Aaa~~~~~~eIVklLLe~GADIN-~kD~~G~TPLH~A~~~lav~~~ld~~~~~~~~~eVVklLL~~G  389 (764)
T PHA02716        311 HYKDSAGRTCLHQYILRHNISTDIIKLLHEYGNDLN-EPDNIGNTVLHTYLSMLSVVNILDPETDNDIRLDVIQCLISLG  389 (764)
T ss_pred             eccCCCCCCHHHHHHHHhCCCchHHHHHHHcCCCCc-cCCCCCCCHHHHHHHhhhhhccccccccccChHHHHHHHHHCC
Confidence            3488899999998764  568999999999999986 8999999999998641             26899999999999


Q ss_pred             CCCCC
Q 042183          174 TSVSH  178 (179)
Q Consensus       174 ~~~~~  178 (179)
                      ++++.
T Consensus       390 ADIn~  394 (764)
T PHA02716        390 ADITA  394 (764)
T ss_pred             CCCCC
Confidence            99864

>PHA02795 ankyrin-like protein; Provisional

Probab=99.86  E-value=5.1e-21  Score=145.83  Aligned_cols=138  Identities=11%  Similarity=0.094  Sum_probs=114.1

Q ss_pred             CCHHHHHHHH--cCChHHHHHHHHHHHHhhCcccccccCCCCCcHHHHHHHHcCCHHHHHHHHHhhcccCCch-h-----
Q 042183           30 IDPNLFKAAA--AGNLEPFKDMAREEILEICPSLLLQVNAKGDSRSLLVAAKFGHCDIVSVLIERAKLLQHED-E-----  101 (179)
Q Consensus        30 ~~~~l~~A~~--~g~~~~~~~ll~~~~~~~~~~~~~~~~~~g~t~~L~~A~~~g~~~~v~~ll~~~~~~~~~~-~-----  101 (179)
                      ..++||.++.  .|+.++++.|++      +++.++..  .+.| |||.|+..++.+++++|+++|++..... .     
T Consensus       116 ~~~~L~~~~~n~~n~~eiV~~LI~------~GADIn~~--~~~t-~lh~A~~~~~~eIVk~Lls~Ga~~~n~~~~~l~~~  186 (437)
T PHA02795        116 VQDLLLYYLSNAYVEIDIVDFMVD------HGAVIYKI--ECLN-AYFRGICKKESSVVEFILNCGIPDENDVKLDLYKI  186 (437)
T ss_pred             ccHHHHHHHHhcCCCHHHHHHHHH------CCCCCCCC--CCCC-HHHHHHHcCcHHHHHHHHhcCCcccccccchhhhh
Confidence            5688999998  889999999988      77777764  4577 9999999999999999999986432111 0     


Q ss_pred             ---------------h------hhhHHHHhccCCCCcHHHHHHHcCCHHHHHHHHhcCCCCCCCCCCCCCCHHHHHHHhc
Q 042183          102 ---------------E------LESGMIRMMNKEKHTALHEAVFHKIVDVVKILTREDLDYPYSANNYNKTPLCMVAEYE  160 (179)
Q Consensus       102 ---------------~------~~~~~~~~~~~~g~t~l~~A~~~g~~~~~~~Ll~~~~~~~~~~~~~g~tpl~~A~~~~  160 (179)
                                     +      ..+..++.++..|.||||+|+..|+.+++++|++.|++++ .++..|.||||+|+. .
T Consensus       187 ~~~t~l~~a~~~~~~eIve~LIs~GADIN~kD~~G~TpLh~Aa~~g~~eiVelLL~~GAdIN-~~d~~G~TpLh~Aa~-~  264 (437)
T PHA02795        187 IQYTRGFLVDEPTVLEIYKLCIPYIEDINQLDAGGRTLLYRAIYAGYIDLVSWLLENGANVN-AVMSNGYTCLDVAVD-R  264 (437)
T ss_pred             hccchhHHHHhcCHHHHHHHHHhCcCCcCcCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCC-CcCCCCCCHHHHHHH-c
Confidence                           0      2334567788999999999999999999999999999987 899999999999999 8


Q ss_pred             C--------CHHHHHHHHhcCCCCCC
Q 042183          161 H--------SSHMVVAILKNCTSVSH  178 (179)
Q Consensus       161 ~--------~~~~~~~Ll~~g~~~~~  178 (179)
                      |        +.+++++|+++|++++.
T Consensus       265 g~~~~~~~~~~eIvelLL~~gadI~~  290 (437)
T PHA02795        265 GSVIARRETHLKILEILLREPLSIDC  290 (437)
T ss_pred             CCcccccccHHHHHHHHHhCCCCCCc
Confidence            8        46999999999998763

>PHA02798 ankyrin-like protein; Provisional

Probab=99.86  E-value=6.3e-21  Score=150.35  Aligned_cols=141  Identities=18%  Similarity=0.161  Sum_probs=115.7

Q ss_pred             ccCCHHHHHHHHcC---ChHHHHHHHHHHHHhhCcccccccCCCCCcHHHHHHHHcCC---HHHHHHHHHhhcccCCchh
Q 042183           28 LQIDPNLFKAAAAG---NLEPFKDMAREEILEICPSLLLQVNAKGDSRSLLVAAKFGH---CDIVSVLIERAKLLQHEDE  101 (179)
Q Consensus        28 ~~~~~~l~~A~~~g---~~~~~~~ll~~~~~~~~~~~~~~~~~~g~t~~L~~A~~~g~---~~~v~~ll~~~~~~~~~~~  101 (179)
                      ....+|||.|+..+   +.+.++.|++      .+..++..|..|.| |||+|+..++   .+++++|+++|++++....
T Consensus       107 ~~G~TpLh~a~~~~~~~~~~iv~~Ll~------~Gadvn~~d~~g~t-pL~~a~~~~~~~~~~vv~~Ll~~gadin~~~~  179 (489)
T PHA02798        107 SDGETPLYCLLSNGYINNLEILLFMIE------NGADTTLLDKDGFT-MLQVYLQSNHHIDIEIIKLLLEKGVDINTHNN  179 (489)
T ss_pred             CCcCcHHHHHHHcCCcChHHHHHHHHH------cCCCccccCCCCCc-HHHHHHHcCCcchHHHHHHHHHhCCCcccccC
Confidence            34568899998875   6788888887      67788888899999 9999998887   8889999988877643210


Q ss_pred             ----h--------------------------------------h-----------------------hhHHHHhccCCCC
Q 042183          102 ----E--------------------------------------L-----------------------ESGMIRMMNKEKH  116 (179)
Q Consensus       102 ----~--------------------------------------~-----------------------~~~~~~~~~~~g~  116 (179)
                          .                                      .                       ....++.+|..|+
T Consensus       180 ~~~~t~Lh~~~~~~~~~~~~~ivk~Li~~Ga~i~~~~~~~~~~~~~~l~~l~~~~~~~~~~i~~~l~~~~dvN~~d~~G~  259 (489)
T PHA02798        180 KEKYDTLHCYFKYNIDRIDADILKLFVDNGFIINKENKSHKKKFMEYLNSLLYDNKRFKKNILDFIFSYIDINQVDELGF  259 (489)
T ss_pred             cCCCcHHHHHHHhccccCCHHHHHHHHHCCCCcccCCccccchHHHHHHHHHhhcccchHHHHHHHHhcCCCCCcCcCCc
Confidence                0                                      0                       0012345778899


Q ss_pred             cHHHHHHHcCCHHHHHHHHhcCCCCCCCCCCCCCCHHHHHHHhcCCHHHHHHHHhcCCCCC
Q 042183          117 TALHEAVFHKIVDVVKILTREDLDYPYSANNYNKTPLCMVAEYEHSSHMVVAILKNCTSVS  177 (179)
Q Consensus       117 t~l~~A~~~g~~~~~~~Ll~~~~~~~~~~~~~g~tpl~~A~~~~~~~~~~~~Ll~~g~~~~  177 (179)
                      ||||+|+.+|+.+++++|++.|++++ ..|..|.|||++|+. .++.++++.|++++++++
T Consensus       260 TPL~~A~~~~~~~~v~~LL~~GAdin-~~d~~G~TpL~~A~~-~~~~~iv~~lL~~~~~~~  318 (489)
T PHA02798        260 NPLYYSVSHNNRKIFEYLLQLGGDIN-IITELGNTCLFTAFE-NESKFIFNSILNKKPNKN  318 (489)
T ss_pred             cHHHHHHHcCcHHHHHHHHHcCCccc-ccCCCCCcHHHHHHH-cCcHHHHHHHHccCCCHH
Confidence            99999999999999999999999987 899999999999999 999999999999998764

>PHA02716 CPXV016; CPX019; EVM010; Provisional

Probab=99.86  E-value=9.6e-21  Score=153.04  Aligned_cols=131  Identities=8%  Similarity=-0.026  Sum_probs=113.2

Q ss_pred             ccCCHHHHHHHH--cCChHHHHHHHHHHHHhhCcccccccCCCCCcHHHHHHHHcCC--HHHHHHHHHhhcccCCchhhh
Q 042183           28 LQIDPNLFKAAA--AGNLEPFKDMAREEILEICPSLLLQVNAKGDSRSLLVAAKFGH--CDIVSVLIERAKLLQHEDEEL  103 (179)
Q Consensus        28 ~~~~~~l~~A~~--~g~~~~~~~ll~~~~~~~~~~~~~~~~~~g~t~~L~~A~~~g~--~~~v~~ll~~~~~~~~~~~~~  103 (179)
                      ....+|||.|+.  .++.++++.|++      .+..++.+|..|.| |||+|+..|+  .+++++|+++|++++.     
T Consensus       175 ~~G~TpLH~A~~n~~~~~eIVklLLe------~GADVN~kD~~G~T-PLH~Aa~~g~~~~eIVklLLe~GADVN~-----  242 (764)
T PHA02716        175 KTGYGILHAYLGNMYVDIDILEWLCN------NGVNVNLQNNHLIT-PLHTYLITGNVCASVIKKIIELGGDMDM-----  242 (764)
T ss_pred             CCCCcHHHHHHHhccCCHHHHHHHHH------cCCCCCCCCCCCCC-HHHHHHHcCCCCHHHHHHHHHcCCCCCC-----
Confidence            346689998865  467899999987      77889999999999 9999999995  5899999999999888     


Q ss_pred             hhHHHHhccCCCCcHHHHH-------------------------------------HHcCCHHHHHHHHhcCCCCCCCCC
Q 042183          104 ESGMIRMMNKEKHTALHEA-------------------------------------VFHKIVDVVKILTREDLDYPYSAN  146 (179)
Q Consensus       104 ~~~~~~~~~~~g~t~l~~A-------------------------------------~~~g~~~~~~~Ll~~~~~~~~~~~  146 (179)
                             ++..|+||||.|                                     +..|+.+++++|++.|++++ .+|
T Consensus       243 -------kD~~G~TPLh~Ai~~a~n~~~EIvkiLie~~d~n~~~~~~~~L~~~i~AA~~g~leiVklLLe~GAdIN-~kD  314 (764)
T PHA02716        243 -------KCVNGMSPIMTYIINIDNINPEITNIYIESLDGNKVKNIPMILHSYITLARNIDISVVYSFLQPGVKLH-YKD  314 (764)
T ss_pred             -------CCCCCCCHHHHHHHhhhccCHHHHHHHHHhccccccccchhhhHHHHHHHHcCCHHHHHHHHhCCCcee-ccC
Confidence                   899999999865                                     45678899999999999986 899


Q ss_pred             CCCCCHHHHHHHh-cCCHHHHHHHHhcCCCCCC
Q 042183          147 NYNKTPLCMVAEY-EHSSHMVVAILKNCTSVSH  178 (179)
Q Consensus       147 ~~g~tpl~~A~~~-~~~~~~~~~Ll~~g~~~~~  178 (179)
                      ..|+||||+|+.. .++.+++++|+++|++++.
T Consensus       315 ~~G~TPLH~Aaa~~~~~~eIVklLLe~GADIN~  347 (764)
T PHA02716        315 SAGRTCLHQYILRHNISTDIIKLLHEYGNDLNE  347 (764)
T ss_pred             CCCCCHHHHHHHHhCCCchHHHHHHHcCCCCcc
Confidence            9999999998641 4688999999999998864

>PHA03095 ankyrin-like protein; Provisional

Probab=99.86  E-value=1.5e-20  Score=147.57  Aligned_cols=129  Identities=16%  Similarity=0.156  Sum_probs=112.1

Q ss_pred             ccCCHHHHHHHHcC---ChHHHHHHHHHHHHhhCcccccccCCCCCcHHHHHHHHcC-CHHHHHHHHHhhcccCCchhhh
Q 042183           28 LQIDPNLFKAAAAG---NLEPFKDMAREEILEICPSLLLQVNAKGDSRSLLVAAKFG-HCDIVSVLIERAKLLQHEDEEL  103 (179)
Q Consensus        28 ~~~~~~l~~A~~~g---~~~~~~~ll~~~~~~~~~~~~~~~~~~g~t~~L~~A~~~g-~~~~v~~ll~~~~~~~~~~~~~  103 (179)
                      ....+|||.|+..|   +.++++.|++      .+..++.++..|.| |||+|+..| ..+++++|+++|++++.     
T Consensus        45 ~~g~t~Lh~a~~~~~~~~~~iv~~Ll~------~Gadin~~~~~g~T-pLh~A~~~~~~~~iv~lLl~~ga~in~-----  112 (471)
T PHA03095         45 EYGKTPLHLYLHYSSEKVKDIVRLLLE------AGADVNAPERCGFT-PLHLYLYNATTLDVIKLLIKAGADVNA-----  112 (471)
T ss_pred             CCCCCHHHHHHHhcCCChHHHHHHHHH------CCCCCCCCCCCCCC-HHHHHHHcCCcHHHHHHHHHcCCCCCC-----
Confidence            34568999999998   8999999987      77788999999999 999999999 59999999999998877     


Q ss_pred             hhHHHHhccCCCCcHHHHHH--HcCCHHHHHHHHhcCCCCCCCCCCCCCCHHHHHHHhcC--CHHHHHHHHhcCCCCC
Q 042183          104 ESGMIRMMNKEKHTALHEAV--FHKIVDVVKILTREDLDYPYSANNYNKTPLCMVAEYEH--SSHMVVAILKNCTSVS  177 (179)
Q Consensus       104 ~~~~~~~~~~~g~t~l~~A~--~~g~~~~~~~Ll~~~~~~~~~~~~~g~tpl~~A~~~~~--~~~~~~~Ll~~g~~~~  177 (179)
                             ++..|.||||+|+  ..++.+++++|++.|++++ ..|..|.||||+|+. .+  ..+++++|+++|++++
T Consensus       113 -------~~~~g~tpLh~a~~~~~~~~~iv~~Ll~~gad~~-~~d~~g~tpL~~a~~-~~~~~~~iv~~Ll~~g~~~~  181 (471)
T PHA03095        113 -------KDKVGRTPLHVYLSGFNINPKVIRLLLRKGADVN-ALDLYGMTPLAVLLK-SRNANVELLRLLIDAGADVY  181 (471)
T ss_pred             -------CCCCCCCHHHHHhhCCcCCHHHHHHHHHcCCCCC-ccCCCCCCHHHHHHH-cCCCCHHHHHHHHHcCCCCc
Confidence                   8888999999999  5567889999999999976 788899999998887 55  5788999999988764

>KOG0508 consensus Ankyrin repeat protein [General function prediction only]

Probab=99.86  E-value=1.7e-21  Score=145.97  Aligned_cols=121  Identities=25%  Similarity=0.307  Sum_probs=114.4

Q ss_pred             CCHHHHHHHHcCChHHHHHHHHHHHHhhCcccccccCCCCCcHHHHHHHHcCCHHHHHHHHHhhcccCCchhhhhhHHHH
Q 042183           30 IDPNLFKAAAAGNLEPFKDMAREEILEICPSLLLQVNAKGDSRSLLVAAKFGHCDIVSVLIERAKLLQHEDEELESGMIR  109 (179)
Q Consensus        30 ~~~~l~~A~~~g~~~~~~~ll~~~~~~~~~~~~~~~~~~g~t~~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~~~~~~~  109 (179)
                      ..+||-.||..|+++++++|++      .+.++++.|..|.| .||+||..|+.+|+++|++.|++++.           
T Consensus       117 NStPLraACfDG~leivKyLvE------~gad~~IanrhGhT-cLmIa~ykGh~~I~qyLle~gADvn~-----------  178 (615)
T KOG0508|consen  117 NSTPLRAACFDGHLEIVKYLVE------HGADPEIANRHGHT-CLMIACYKGHVDIAQYLLEQGADVNA-----------  178 (615)
T ss_pred             CCccHHHHHhcchhHHHHHHHH------cCCCCcccccCCCe-eEEeeeccCchHHHHHHHHhCCCcch-----------
Confidence            3489999999999999999998      78888999999999 99999999999999999999999888           


Q ss_pred             hccCCCCcHHHHHHHcCCHHHHHHHHhcCCCCCCCCCCCCCCHHHHHHHhcCCHHHHHHHHhc
Q 042183          110 MMNKEKHTALHEAVFHKIVDVVKILTREDLDYPYSANNYNKTPLCMVAEYEHSSHMVVAILKN  172 (179)
Q Consensus       110 ~~~~~g~t~l~~A~~~g~~~~~~~Ll~~~~~~~~~~~~~g~tpl~~A~~~~~~~~~~~~Ll~~  172 (179)
                       ++..|+|+||.|+..|+++++++|+.+|+.+  ..|..|.|||..|+. .|+.+++.+|++.
T Consensus       179 -ks~kGNTALH~caEsG~vdivq~Ll~~ga~i--~~d~~GmtPL~~Aa~-tG~~~iVe~L~~~  237 (615)
T KOG0508|consen  179 -KSYKGNTALHDCAESGSVDIVQLLLKHGAKI--DVDGHGMTPLLLAAV-TGHTDIVERLLQC  237 (615)
T ss_pred             -hcccCchHHHhhhhcccHHHHHHHHhCCcee--eecCCCCchHHHHhh-hcchHHHHHHhcC
Confidence             9999999999999999999999999999986  578899999999999 9999999999963

>PHA02946 ankyin-like protein; Provisional

Probab=99.86  E-value=2.2e-20  Score=145.25  Aligned_cols=141  Identities=13%  Similarity=0.149  Sum_probs=114.6

Q ss_pred             ccCCHHHHHHHHcCChHHHHHHHHHHHHhhCcccccccCCCCCcHHHHHHHHcCC--HHHHHHHHHhhcccCCc-hhh--
Q 042183           28 LQIDPNLFKAAAAGNLEPFKDMAREEILEICPSLLLQVNAKGDSRSLLVAAKFGH--CDIVSVLIERAKLLQHE-DEE--  102 (179)
Q Consensus        28 ~~~~~~l~~A~~~g~~~~~~~ll~~~~~~~~~~~~~~~~~~g~t~~L~~A~~~g~--~~~v~~ll~~~~~~~~~-~~~--  102 (179)
                      ....+|||.|++.|+.++++.|++      .+..++.+|..|.| |||+|+..++  .+++++|+++|++++.. ...  
T Consensus        70 ~~G~TpLh~Aa~~g~~eiv~lLL~------~GAdin~~d~~g~T-pLh~A~~~~~~~~e~v~lLl~~Gadin~~~d~~g~  142 (446)
T PHA02946         70 DDGNYPLHIASKINNNRIVAMLLT------HGADPNACDKQHKT-PLYYLSGTDDEVIERINLLVQYGAKINNSVDEEGC  142 (446)
T ss_pred             CCCCCHHHHHHHcCCHHHHHHHHH------CcCCCCCCCCCCCC-HHHHHHHcCCchHHHHHHHHHcCCCcccccCCCCC
Confidence            445689999999999999999987      77788999999999 9999988764  78999999999887741 110  


Q ss_pred             ------------------hhhHHHHhccCCCCcHHHHHHHcCC--HHHHHHHHhcCCCCCCCCCCCCCCHHHHHHHhcC-
Q 042183          103 ------------------LESGMIRMMNKEKHTALHEAVFHKI--VDVVKILTREDLDYPYSANNYNKTPLCMVAEYEH-  161 (179)
Q Consensus       103 ------------------~~~~~~~~~~~~g~t~l~~A~~~g~--~~~~~~Ll~~~~~~~~~~~~~g~tpl~~A~~~~~-  161 (179)
                                        ..+..++.+|..|+||||+|+..++  .+++++|++.|++++ .+|..|.||||+|+. .+ 
T Consensus       143 tpL~aa~~~~~~vv~~Ll~~gad~~~~d~~G~t~Lh~A~~~~~~~~~~v~~Ll~~Gadin-~~d~~G~TpLH~Aa~-~~~  220 (446)
T PHA02946        143 GPLLACTDPSERVFKKIMSIGFEARIVDKFGKNHIHRHLMSDNPKASTISWMMKLGISPS-KPDHDGNTPLHIVCS-KTV  220 (446)
T ss_pred             cHHHHHHCCChHHHHHHHhccccccccCCCCCCHHHHHHHhcCCCHHHHHHHHHcCCCCc-ccCCCCCCHHHHHHH-cCC
Confidence                              1223346678889999999877654  688999999999976 889999999999998 76 


Q ss_pred             -CHHHHHHHHhcCCCCCC
Q 042183          162 -SSHMVVAILKNCTSVSH  178 (179)
Q Consensus       162 -~~~~~~~Ll~~g~~~~~  178 (179)
                       +.+++++|+. |++++.
T Consensus       221 ~~~~iv~lLl~-gadin~  237 (446)
T PHA02946        221 KNVDIINLLLP-STDVNK  237 (446)
T ss_pred             CcHHHHHHHHc-CCCCCC
Confidence             7889998884 787764

>PHA02946 ankyin-like protein; Provisional

Probab=99.85  E-value=2.2e-20  Score=145.34  Aligned_cols=126  Identities=13%  Similarity=0.102  Sum_probs=96.2

Q ss_pred             CHHHHHHHH--cCChHHHHHHHHHHHHhhCcccccccCCCCCcHHHHHHHHcCCHHHHHHHHHhhcccCCchhhhhhHHH
Q 042183           31 DPNLFKAAA--AGNLEPFKDMAREEILEICPSLLLQVNAKGDSRSLLVAAKFGHCDIVSVLIERAKLLQHEDEELESGMI  108 (179)
Q Consensus        31 ~~~l~~A~~--~g~~~~~~~ll~~~~~~~~~~~~~~~~~~g~t~~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~~~~~~  108 (179)
                      .+.||.++.  .++.++++.|++      .+..++.+|..|.| |||+|+..|+.+++++|+++|++++.          
T Consensus        38 ~~~Lh~~~~~~~~~~~iv~~Ll~------~Gadvn~~d~~G~T-pLh~Aa~~g~~eiv~lLL~~GAdin~----------  100 (446)
T PHA02946         38 YHILHAYCGIKGLDERFVEELLH------RGYSPNETDDDGNY-PLHIASKINNNRIVAMLLTHGADPNA----------  100 (446)
T ss_pred             ChHHHHHHHhcCCCHHHHHHHHH------CcCCCCccCCCCCC-HHHHHHHcCCHHHHHHHHHCcCCCCC----------
Confidence            467887664  446788999987      67788999999999 99999999999999999999998887          


Q ss_pred             HhccCCCCcHHHHHHHcCC--HHHHHHHHhcCCCCCCCCCCCCCCHHHHHHHhcCCHHHHHHHHhcCCCCC
Q 042183          109 RMMNKEKHTALHEAVFHKI--VDVVKILTREDLDYPYSANNYNKTPLCMVAEYEHSSHMVVAILKNCTSVS  177 (179)
Q Consensus       109 ~~~~~~g~t~l~~A~~~g~--~~~~~~Ll~~~~~~~~~~~~~g~tpl~~A~~~~~~~~~~~~Ll~~g~~~~  177 (179)
                        +|..|.||||+|+..++  .+++++|++.|++++...+..|.|||+ |+. .++.+++++|+++|++++
T Consensus       101 --~d~~g~TpLh~A~~~~~~~~e~v~lLl~~Gadin~~~d~~g~tpL~-aa~-~~~~~vv~~Ll~~gad~~  167 (446)
T PHA02946        101 --CDKQHKTPLYYLSGTDDEVIERINLLVQYGAKINNSVDEEGCGPLL-ACT-DPSERVFKKIMSIGFEAR  167 (446)
T ss_pred             --CCCCCCCHHHHHHHcCCchHHHHHHHHHcCCCcccccCCCCCcHHH-HHH-CCChHHHHHHHhcccccc
Confidence              77777777777766553  667777777777765445666677775 555 566666666666665543

>PHA02876 ankyrin repeat protein; Provisional

Probab=99.85  E-value=3.8e-20  Score=151.21  Aligned_cols=106  Identities=19%  Similarity=0.170  Sum_probs=85.3

Q ss_pred             CcccccccCCCCCcHHHHHHHHcCCHHHHHHHHHhhcccCCchhhhhhHHHHhccCCCCcHHHHHHHcCC-HHHHHHHHh
Q 042183           58 CPSLLLQVNAKGDSRSLLVAAKFGHCDIVSVLIERAKLLQHEDEELESGMIRMMNKEKHTALHEAVFHKI-VDVVKILTR  136 (179)
Q Consensus        58 ~~~~~~~~~~~g~t~~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~~~~~~~~~~~~g~t~l~~A~~~g~-~~~~~~Ll~  136 (179)
                      .+..++.+|..|.| |||+|+..|+.+++++|+++|++++.            .+..|.||||+|+..+. ..++++|++
T Consensus       364 ~gadin~~d~~G~T-pLh~Aa~~~~~~iv~~Ll~~gad~~~------------~~~~g~T~Lh~A~~~~~~~~~vk~Ll~  430 (682)
T PHA02876        364 LGANVNARDYCDKT-PIHYAAVRNNVVIINTLLDYGADIEA------------LSQKIGTALHFALCGTNPYMSVKTLID  430 (682)
T ss_pred             cCCCCccCCCCCCC-HHHHHHHcCCHHHHHHHHHCCCCccc------------cCCCCCchHHHHHHcCCHHHHHHHHHh
Confidence            56677788888888 88888888888888888888887766            77778888888876655 456788888


Q ss_pred             cCCCCCCCCCCCCCCHHHHHHHhcC-CHHHHHHHHhcCCCCCC
Q 042183          137 EDLDYPYSANNYNKTPLCMVAEYEH-SSHMVVAILKNCTSVSH  178 (179)
Q Consensus       137 ~~~~~~~~~~~~g~tpl~~A~~~~~-~~~~~~~Ll~~g~~~~~  178 (179)
                      .|++++ .+|..|+||||+|+. .+ +.+++++|+++|++++.
T Consensus       431 ~gadin-~~d~~G~TpLh~Aa~-~~~~~~iv~lLl~~Gad~n~  471 (682)
T PHA02876        431 RGANVN-SKNKDLSTPLHYACK-KNCKLDVIEMLLDNGADVNA  471 (682)
T ss_pred             CCCCCC-cCCCCCChHHHHHHH-hCCcHHHHHHHHHCCCCCCC
Confidence            888876 788888889888888 65 67888888888888764

>PHA03095 ankyrin-like protein; Provisional

Probab=99.85  E-value=1.8e-20  Score=147.12  Aligned_cols=124  Identities=18%  Similarity=0.261  Sum_probs=113.8

Q ss_pred             HHHHHHcCChHHHHHHHHHHHHhhCcccccccCCCCCcHHHHHHHHcC---CHHHHHHHHHhhcccCCchhhhhhHHHHh
Q 042183           34 LFKAAAAGNLEPFKDMAREEILEICPSLLLQVNAKGDSRSLLVAAKFG---HCDIVSVLIERAKLLQHEDEELESGMIRM  110 (179)
Q Consensus        34 l~~A~~~g~~~~~~~ll~~~~~~~~~~~~~~~~~~g~t~~L~~A~~~g---~~~~v~~ll~~~~~~~~~~~~~~~~~~~~  110 (179)
                      ...++..++++.++.|++      .+..++..+..|.| |||+|+..+   +.+++++|++.|++++.            
T Consensus        18 ~~~~~~~~~~~~v~~Ll~------~ga~vn~~~~~g~t-~Lh~a~~~~~~~~~~iv~~Ll~~Gadin~------------   78 (471)
T PHA03095         18 YLLNASNVTVEEVRRLLA------AGADVNFRGEYGKT-PLHLYLHYSSEKVKDIVRLLLEAGADVNA------------   78 (471)
T ss_pred             HHHcCCCCCHHHHHHHHH------cCCCcccCCCCCCC-HHHHHHHhcCCChHHHHHHHHHCCCCCCC------------
Confidence            356788889999999988      67888999999999 999999999   99999999999998887            


Q ss_pred             ccCCCCcHHHHHHHcC-CHHHHHHHHhcCCCCCCCCCCCCCCHHHHHH--HhcCCHHHHHHHHhcCCCCCC
Q 042183          111 MNKEKHTALHEAVFHK-IVDVVKILTREDLDYPYSANNYNKTPLCMVA--EYEHSSHMVVAILKNCTSVSH  178 (179)
Q Consensus       111 ~~~~g~t~l~~A~~~g-~~~~~~~Ll~~~~~~~~~~~~~g~tpl~~A~--~~~~~~~~~~~Ll~~g~~~~~  178 (179)
                      ++..|.||||+|+..| +.+++++|++.|++++ ..+..|.||||+|+  . .++.+++++|+++|++++.
T Consensus        79 ~~~~g~TpLh~A~~~~~~~~iv~lLl~~ga~in-~~~~~g~tpLh~a~~~~-~~~~~iv~~Ll~~gad~~~  147 (471)
T PHA03095         79 PERCGFTPLHLYLYNATTLDVIKLLIKAGADVN-AKDKVGRTPLHVYLSGF-NINPKVIRLLLRKGADVNA  147 (471)
T ss_pred             CCCCCCCHHHHHHHcCCcHHHHHHHHHcCCCCC-CCCCCCCCHHHHHhhCC-cCCHHHHHHHHHcCCCCCc
Confidence            8999999999999999 5999999999999986 89999999999999  5 6789999999999998864

>PF12796 Ank_2: Ankyrin repeats (3 copies); InterPro: IPR020683 This entry represents the ankyrin repeat-containing domain

Probab=99.85  E-value=2.2e-20  Score=114.64  Aligned_cols=88  Identities=30%  Similarity=0.385  Sum_probs=79.2

Q ss_pred             HHHHHHcCCHHHHHHHHHhhcccCCchhhhhhHHHHhccCCCCcHHHHHHHcCCHHHHHHHHhcCCCCCCCCCCCCCCHH
Q 042183           74 LLVAAKFGHCDIVSVLIERAKLLQHEDEELESGMIRMMNKEKHTALHEAVFHKIVDVVKILTREDLDYPYSANNYNKTPL  153 (179)
Q Consensus        74 L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~~~~~~~~~~~~g~t~l~~A~~~g~~~~~~~Ll~~~~~~~~~~~~~g~tpl  153 (179)
                      ||+|++.|+.+++++|++.+.+.               +. |.||||+|+..|+.+++++|++.|++++ .++..|+|||
T Consensus         1 L~~A~~~~~~~~~~~ll~~~~~~---------------~~-~~~~l~~A~~~~~~~~~~~Ll~~g~~~~-~~~~~g~t~L   63 (89)
T PF12796_consen    1 LHIAAQNGNLEILKFLLEKGADI---------------NL-GNTALHYAAENGNLEIVKLLLENGADIN-SQDKNGNTAL   63 (89)
T ss_dssp             HHHHHHTTTHHHHHHHHHTTSTT---------------TS-SSBHHHHHHHTTTHHHHHHHHHTTTCTT--BSTTSSBHH
T ss_pred             CHHHHHcCCHHHHHHHHHCcCCC---------------CC-CCCHHHHHHHcCCHHHHHHHHHhccccc-ccCCCCCCHH
Confidence            79999999999999999987532               22 8899999999999999999999999986 8889999999


Q ss_pred             HHHHHhcCCHHHHHHHHhcCCCCCCC
Q 042183          154 CMVAEYEHSSHMVVAILKNCTSVSHR  179 (179)
Q Consensus       154 ~~A~~~~~~~~~~~~Ll~~g~~~~~r  179 (179)
                      |+|+. +|+.+++++|+++|++++.|
T Consensus        64 ~~A~~-~~~~~~~~~Ll~~g~~~~~~   88 (89)
T PF12796_consen   64 HYAAE-NGNLEIVKLLLEHGADVNIR   88 (89)
T ss_dssp             HHHHH-TTHHHHHHHHHHTTT-TTSS
T ss_pred             HHHHH-cCCHHHHHHHHHcCCCCCCc
Confidence            99999 99999999999999999865

These domains contain multiple repeats of a beta(2)-alpha(2) motif. The ankyrin repeat is one of the most common protein-protein interaction motifs in nature. Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].; PDB: 3AAA_C 3F6Q_A 2KBX_A 3IXE_A 3TWR_D 3TWV_A 3TWT_B 3TWQ_A 3TWS_A 3TWX_B ....

>PHA02795 ankyrin-like protein; Provisional

Probab=99.84  E-value=6.8e-20  Score=139.73  Aligned_cols=111  Identities=13%  Similarity=0.008  Sum_probs=90.4

Q ss_pred             cCCCCCcHHHHHHHH--cCCHHHHHHHHHhhcccCCchh-h------------------hhhH-HHHhc-----cCCCCc
Q 042183           65 VNAKGDSRSLLVAAK--FGHCDIVSVLIERAKLLQHEDE-E------------------LESG-MIRMM-----NKEKHT  117 (179)
Q Consensus        65 ~~~~g~t~~L~~A~~--~g~~~~v~~ll~~~~~~~~~~~-~------------------~~~~-~~~~~-----~~~g~t  117 (179)
                      ++..++| +||+++.  .|+.+++++|+++|++++.... .                  ..+. ..+..     +..+.+
T Consensus       112 ~~~~~~~-~L~~~~~n~~n~~eiV~~LI~~GADIn~~~~~t~lh~A~~~~~~eIVk~Lls~Ga~~~n~~~~~l~~~~~~t  190 (437)
T PHA02795        112 NCNSVQD-LLLYYLSNAYVEIDIVDFMVDHGAVIYKIECLNAYFRGICKKESSVVEFILNCGIPDENDVKLDLYKIIQYT  190 (437)
T ss_pred             ccccccH-HHHHHHHhcCCCHHHHHHHHHCCCCCCCCCCCCHHHHHHHcCcHHHHHHHHhcCCcccccccchhhhhhccc
Confidence            5566888 9999999  8999999999999999876321 1                  0000 01111     123678


Q ss_pred             HHHHHHHcCCHHHHHHHHhcCCCCCCCCCCCCCCHHHHHHHhcCCHHHHHHHHhcCCCCCC
Q 042183          118 ALHEAVFHKIVDVVKILTREDLDYPYSANNYNKTPLCMVAEYEHSSHMVVAILKNCTSVSH  178 (179)
Q Consensus       118 ~l~~A~~~g~~~~~~~Ll~~~~~~~~~~~~~g~tpl~~A~~~~~~~~~~~~Ll~~g~~~~~  178 (179)
                      ++|.|+..++.+++++|+.+|++++ .+|..|.||||+|+. .|+.+++++|+++|++++.
T Consensus       191 ~l~~a~~~~~~eIve~LIs~GADIN-~kD~~G~TpLh~Aa~-~g~~eiVelLL~~GAdIN~  249 (437)
T PHA02795        191 RGFLVDEPTVLEIYKLCIPYIEDIN-QLDAGGRTLLYRAIY-AGYIDLVSWLLENGANVNA  249 (437)
T ss_pred             hhHHHHhcCHHHHHHHHHhCcCCcC-cCCCCCCCHHHHHHH-cCCHHHHHHHHHCCCCCCC
Confidence            8999999999999999999999987 899999999999999 9999999999999999874

>PHA02989 ankyrin repeat protein; Provisional

Probab=99.84  E-value=4.7e-20  Score=145.59  Aligned_cols=66  Identities=15%  Similarity=0.070  Sum_probs=61.1

Q ss_pred             HHhccCCCCcHHHHHHHcCCHHHHHHHHhcCCCCCCCCCCCCCCHHHHHHHhcCCHHHHHHHHhcCCC
Q 042183          108 IRMMNKEKHTALHEAVFHKIVDVVKILTREDLDYPYSANNYNKTPLCMVAEYEHSSHMVVAILKNCTS  175 (179)
Q Consensus       108 ~~~~~~~g~t~l~~A~~~g~~~~~~~Ll~~~~~~~~~~~~~g~tpl~~A~~~~~~~~~~~~Ll~~g~~  175 (179)
                      ++.+|..|+||||+|+..|+.+++++|++.|++++ .+|..|.||||+|+. .|+.++++.|++++..
T Consensus       249 vn~~d~~G~TpL~~Aa~~~~~~~v~~LL~~Gadin-~~d~~G~TpL~~A~~-~~~~~iv~~LL~~~p~  314 (494)
T PHA02989        249 INKKDKKGFNPLLISAKVDNYEAFNYLLKLGDDIY-NVSKDGDTVLTYAIK-HGNIDMLNRILQLKPG  314 (494)
T ss_pred             CCCCCCCCCCHHHHHHHhcCHHHHHHHHHcCCCcc-ccCCCCCCHHHHHHH-cCCHHHHHHHHhcCCC
Confidence            35678889999999999999999999999999987 899999999999999 9999999999998754

>KOG4177 consensus Ankyrin [Cell wall/membrane/envelope biogenesis]

Probab=99.83  E-value=3e-20  Score=153.52  Aligned_cols=134  Identities=22%  Similarity=0.187  Sum_probs=112.3

Q ss_pred             cccCCHHHHHHHHcCChHHHHHHHHHH---------------------------HHhhCcccccccCCCCCcHHHHHHHH
Q 042183           27 QLQIDPNLFKAAAAGNLEPFKDMAREE---------------------------ILEICPSLLLQVNAKGDSRSLLVAAK   79 (179)
Q Consensus        27 ~~~~~~~l~~A~~~g~~~~~~~ll~~~---------------------------~~~~~~~~~~~~~~~g~t~~L~~A~~   79 (179)
                      ....-++||.|+..|+.+.++.+++.+                           ++-..+..++.++..|+| |||.||.
T Consensus       471 s~~G~T~Lhlaaq~Gh~~~~~llle~~~~~~~~~~~~l~~lhla~~~~~v~~~~~l~~~ga~v~~~~~r~~T-pLh~A~~  549 (1143)
T KOG4177|consen  471 SKQGFTPLHLAAQEGHTEVVQLLLEGGANDNLDAKKGLTPLHLAADEDTVKVAKILLEHGANVDLRTGRGYT-PLHVAVH  549 (1143)
T ss_pred             ccccCcchhhhhccCCchHHHHhhhcCCccCccchhccchhhhhhhhhhHHHHHHHhhcCCceehhcccccc-hHHHHHh
Confidence            344456677777777777777666611                           122256677888899999 9999999


Q ss_pred             cCCHHHHHHHHHhhcccCCchhhhhhHHHHhccCCCCcHHHHHHHcCCHHHHHHHHhcCCCCCCCCCCCCCCHHHHHHHh
Q 042183           80 FGHCDIVSVLIERAKLLQHEDEELESGMIRMMNKEKHTALHEAVFHKIVDVVKILTREDLDYPYSANNYNKTPLCMVAEY  159 (179)
Q Consensus        80 ~g~~~~v~~ll~~~~~~~~~~~~~~~~~~~~~~~~g~t~l~~A~~~g~~~~~~~Ll~~~~~~~~~~~~~g~tpl~~A~~~  159 (179)
                      +|+.++|++|+++|++.+.            +++.|+||||.||.+|+.+|+.+|+++|++++ ..|.+|.|||++|+. 
T Consensus       550 ~g~v~~VkfLLe~gAdv~a------------k~~~G~TPLH~Aa~~G~~~i~~LLlk~GA~vn-a~d~~g~TpL~iA~~-  615 (1143)
T KOG4177|consen  550 YGNVDLVKFLLEHGADVNA------------KDKLGYTPLHQAAQQGHNDIAELLLKHGASVN-AADLDGFTPLHIAVR-  615 (1143)
T ss_pred             cCCchHHHHhhhCCccccc------------cCCCCCChhhHHHHcChHHHHHHHHHcCCCCC-cccccCcchhHHHHH-
Confidence            9999999999999998887            89999999999999999999999999999987 899999999999999 


Q ss_pred             cCCHHHHHHHHhcCCC
Q 042183          160 EHSSHMVVAILKNCTS  175 (179)
Q Consensus       160 ~~~~~~~~~Ll~~g~~  175 (179)
                      .|+.++++.|+..+++
T Consensus       616 lg~~~~~k~l~~~~~~  631 (1143)
T KOG4177|consen  616 LGYLSVVKLLKVVTAT  631 (1143)
T ss_pred             hcccchhhHHHhccCc
Confidence            9999999999988865

>PHA02798 ankyrin-like protein; Provisional

Probab=99.83  E-value=7.3e-20  Score=144.34  Aligned_cols=125  Identities=13%  Similarity=0.104  Sum_probs=105.3

Q ss_pred             HHHHHHHH--cCChHHHHHHHHHHHHhhCcccccccCCCCCcHHHHHHHHc-----CCHHHHHHHHHhhcccCCchhhhh
Q 042183           32 PNLFKAAA--AGNLEPFKDMAREEILEICPSLLLQVNAKGDSRSLLVAAKF-----GHCDIVSVLIERAKLLQHEDEELE  104 (179)
Q Consensus        32 ~~l~~A~~--~g~~~~~~~ll~~~~~~~~~~~~~~~~~~g~t~~L~~A~~~-----g~~~~v~~ll~~~~~~~~~~~~~~  104 (179)
                      ++++.+..  .++.++++.|++      .+..++..+..|.| |||.|+.+     +..+++++|+++|++++.      
T Consensus        38 ~~~~~yl~~~~~~~~iv~~Ll~------~Gadvn~~d~~g~T-pL~~~~~n~~~~~~~~~iv~~Ll~~GadiN~------  104 (489)
T PHA02798         38 SIFQKYLQRDSPSTDIVKLFIN------LGANVNGLDNEYST-PLCTILSNIKDYKHMLDIVKILIENGADINK------  104 (489)
T ss_pred             hHHHHHHhCCCCCHHHHHHHHH------CCCCCCCCCCCCCC-hHHHHHHhHHhHHhHHHHHHHHHHCCCCCCC------
Confidence            44443443  447888999987      77788889999999 99998764     668999999999998877      


Q ss_pred             hHHHHhccCCCCcHHHHHHHcC---CHHHHHHHHhcCCCCCCCCCCCCCCHHHHHHHhcCC---HHHHHHHHhcCCCCC
Q 042183          105 SGMIRMMNKEKHTALHEAVFHK---IVDVVKILTREDLDYPYSANNYNKTPLCMVAEYEHS---SHMVVAILKNCTSVS  177 (179)
Q Consensus       105 ~~~~~~~~~~g~t~l~~A~~~g---~~~~~~~Ll~~~~~~~~~~~~~g~tpl~~A~~~~~~---~~~~~~Ll~~g~~~~  177 (179)
                            ++..|.||||+|+..+   +.+++++|++.|++++ ..|..|.||||+|+. .++   .+++++|+++|++++
T Consensus       105 ------~d~~G~TpLh~a~~~~~~~~~~iv~~Ll~~Gadvn-~~d~~g~tpL~~a~~-~~~~~~~~vv~~Ll~~gadin  175 (489)
T PHA02798        105 ------KNSDGETPLYCLLSNGYINNLEILLFMIENGADTT-LLDKDGFTMLQVYLQ-SNHHIDIEIIKLLLEKGVDIN  175 (489)
T ss_pred             ------CCCCcCcHHHHHHHcCCcChHHHHHHHHHcCCCcc-ccCCCCCcHHHHHHH-cCCcchHHHHHHHHHhCCCcc
Confidence                  8899999999999875   6899999999999976 889999999999999 887   899999999998875

>KOG0502 consensus Integral membrane ankyrin-repeat protein Kidins220 (protein kinase D substrate) [General function prediction only]

Probab=99.83  E-value=2.4e-20  Score=127.53  Aligned_cols=124  Identities=19%  Similarity=0.198  Sum_probs=106.4

Q ss_pred             CHHHHHHHHcCChHHHHHHHHHHHHhhCcccccccCCCCCcHHHHHHHHcCCHHHHHHHHHhhcccCCchhhhhhHHHHh
Q 042183           31 DPNLFKAAAAGNLEPFKDMAREEILEICPSLLLQVNAKGDSRSLLVAAKFGHCDIVSVLIERAKLLQHEDEELESGMIRM  110 (179)
Q Consensus        31 ~~~l~~A~~~g~~~~~~~ll~~~~~~~~~~~~~~~~~~g~t~~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~~~~~~~~  110 (179)
                      .+++..++.+.+++.+..+..        ..+|..|..|.| ||.+|+.+|+..+|++||..|+++..            
T Consensus       130 ~s~~slsVhql~L~~~~~~~~--------n~VN~~De~GfT-pLiWAaa~G~i~vV~fLL~~GAdp~~------------  188 (296)
T KOG0502|consen  130 WSPLSLSVHQLHLDVVDLLVN--------NKVNACDEFGFT-PLIWAAAKGHIPVVQFLLNSGADPDA------------  188 (296)
T ss_pred             CChhhHHHHHHHHHHHHHHhh--------ccccCccccCch-HhHHHHhcCchHHHHHHHHcCCChhh------------
Confidence            356777777777766654433        467889999999 99999999999999999999998876            


Q ss_pred             ccCCCCcHHHHHHHcCCHHHHHHHHhcCCCCCCCCCCCCCCHHHHHHHhcCCHHHHHHHHhcCCCCC
Q 042183          111 MNKEKHTALHEAVFHKIVDVVKILTREDLDYPYSANNYNKTPLCMVAEYEHSSHMVVAILKNCTSVS  177 (179)
Q Consensus       111 ~~~~g~t~l~~A~~~g~~~~~~~Ll~~~~~~~~~~~~~g~tpl~~A~~~~~~~~~~~~Ll~~g~~~~  177 (179)
                      ..+...++|..|+..|..++|+.|+..+.+++ ..|-+|.|||.+|++ .+|.+|++.|+..|++++
T Consensus       189 lgk~resALsLAt~ggytdiV~lLL~r~vdVN-vyDwNGgTpLlyAvr-gnhvkcve~Ll~sGAd~t  253 (296)
T KOG0502|consen  189 LGKYRESALSLATRGGYTDIVELLLTREVDVN-VYDWNGGTPLLYAVR-GNHVKCVESLLNSGADVT  253 (296)
T ss_pred             hhhhhhhhHhHHhcCChHHHHHHHHhcCCCcc-eeccCCCceeeeeec-CChHHHHHHHHhcCCCcc
Confidence            77778899999999999999999999999987 889999999999999 999999999999998875

>PHA02989 ankyrin repeat protein; Provisional

Probab=99.83  E-value=1.7e-19  Score=142.39  Aligned_cols=128  Identities=16%  Similarity=0.173  Sum_probs=89.9

Q ss_pred             CHHHHHHHHcCC------hHHHHHHHHHHHHhhCcccccccCCCCCcHHHHHHHHc---CCHHHHHHHHHhhccc-CCch
Q 042183           31 DPNLFKAAAAGN------LEPFKDMAREEILEICPSLLLQVNAKGDSRSLLVAAKF---GHCDIVSVLIERAKLL-QHED  100 (179)
Q Consensus        31 ~~~l~~A~~~g~------~~~~~~ll~~~~~~~~~~~~~~~~~~g~t~~L~~A~~~---g~~~~v~~ll~~~~~~-~~~~  100 (179)
                      .+|||.|+..+.      .++++.|++      .+.+++.+|..|.| |||.|+..   ++.+++++|+++|+++ +.  
T Consensus        70 ~tpL~~a~~~~~~~~~~~~~iv~~Ll~------~Gadin~~d~~g~t-pL~~a~~~~~~~~~eiv~~Ll~~Gadin~~--  140 (494)
T PHA02989         70 ETPLCAVLRNREITSNKIKKIVKLLLK------FGADINLKTFNGVS-PIVCFIYNSNINNCDMLRFLLSKGINVNDV--  140 (494)
T ss_pred             CCcHHHHHhccCcchhhHHHHHHHHHH------CCCCCCCCCCCCCc-HHHHHHHhcccCcHHHHHHHHHCCCCcccc--
Confidence            466776665442      456666665      56667777777777 77776654   4677777777777766 45  


Q ss_pred             hhhhhHHHHhccCCCCcHHHHHHHc--CCHHHHHHHHhcCCCCCCCCCCCCCCHHHHHHHhcC----CHHHHHHHHhcCC
Q 042183          101 EELESGMIRMMNKEKHTALHEAVFH--KIVDVVKILTREDLDYPYSANNYNKTPLCMVAEYEH----SSHMVVAILKNCT  174 (179)
Q Consensus       101 ~~~~~~~~~~~~~~g~t~l~~A~~~--g~~~~~~~Ll~~~~~~~~~~~~~g~tpl~~A~~~~~----~~~~~~~Ll~~g~  174 (179)
                                ++..|+||||+|+..  ++.+++++|++.|+++....+..|.||||+|+. .+    +.+++++|+++|+
T Consensus       141 ----------~d~~g~tpLh~a~~~~~~~~~iv~~Ll~~Gadi~~~~~~~g~tpL~~a~~-~~~~~~~~~iv~~Ll~~Ga  209 (494)
T PHA02989        141 ----------KNSRGYNLLHMYLESFSVKKDVIKILLSFGVNLFEKTSLYGLTPMNIYLR-NDIDVISIKVIKYLIKKGV  209 (494)
T ss_pred             ----------cCCCCCCHHHHHHHhccCCHHHHHHHHHcCCCccccccccCCChHHHHHh-cccccccHHHHHHHHhCCC
Confidence                      777788888877653  567888888888887653256778888888776 54    7788888888887


Q ss_pred             CCCC
Q 042183          175 SVSH  178 (179)
Q Consensus       175 ~~~~  178 (179)
                      +++.
T Consensus       210 ~vn~  213 (494)
T PHA02989        210 NIET  213 (494)
T ss_pred             Cccc
Confidence            7653

>KOG4177 consensus Ankyrin [Cell wall/membrane/envelope biogenesis]

Probab=99.83  E-value=3.1e-20  Score=153.42  Aligned_cols=140  Identities=24%  Similarity=0.251  Sum_probs=120.6

Q ss_pred             CCHHHHHHHHcC-ChHHHHHHHHHHHHhhCcccccccCCCCCcHHHHHHHHcCCHHHHHHHHHhhcccCCchhh------
Q 042183           30 IDPNLFKAAAAG-NLEPFKDMAREEILEICPSLLLQVNAKGDSRSLLVAAKFGHCDIVSVLIERAKLLQHEDEE------  102 (179)
Q Consensus        30 ~~~~l~~A~~~g-~~~~~~~ll~~~~~~~~~~~~~~~~~~g~t~~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~------  102 (179)
                      ..+++|.|+..| ..+....++.      .+..++..-..|.| |||.|+..|+.+++..+++.++..+...+.      
T Consensus       440 G~T~lhvaa~~g~~~~~~~~l~~------~g~~~n~~s~~G~T-~Lhlaaq~Gh~~~~~llle~~~~~~~~~~~~l~~lh  512 (1143)
T KOG4177|consen  440 GYTPLHVAAKKGRYLQIARLLLQ------YGADPNAVSKQGFT-PLHLAAQEGHTEVVQLLLEGGANDNLDAKKGLTPLH  512 (1143)
T ss_pred             CCChhhhhhhcccHhhhhhhHhh------cCCCcchhccccCc-chhhhhccCCchHHHHhhhcCCccCccchhccchhh
Confidence            358899999999 4555544444      78888999999999 999999999999999999988666553333      


Q ss_pred             ---------------hhhHHHHhccCCCCcHHHHHHHcCCHHHHHHHHhcCCCCCCCCCCCCCCHHHHHHHhcCCHHHHH
Q 042183          103 ---------------LESGMIRMMNKEKHTALHEAVFHKIVDVVKILTREDLDYPYSANNYNKTPLCMVAEYEHSSHMVV  167 (179)
Q Consensus       103 ---------------~~~~~~~~~~~~g~t~l~~A~~~g~~~~~~~Ll~~~~~~~~~~~~~g~tpl~~A~~~~~~~~~~~  167 (179)
                                     ..+.+++.++..|.||||.||.+|+..+|++|+++|++++ .++..|+||||.||. .|+.+|+.
T Consensus       513 la~~~~~v~~~~~l~~~ga~v~~~~~r~~TpLh~A~~~g~v~~VkfLLe~gAdv~-ak~~~G~TPLH~Aa~-~G~~~i~~  590 (1143)
T KOG4177|consen  513 LAADEDTVKVAKILLEHGANVDLRTGRGYTPLHVAVHYGNVDLVKFLLEHGADVN-AKDKLGYTPLHQAAQ-QGHNDIAE  590 (1143)
T ss_pred             hhhhhhhHHHHHHHhhcCCceehhcccccchHHHHHhcCCchHHHHhhhCCcccc-ccCCCCCChhhHHHH-cChHHHHH
Confidence                           3345667788889999999999999999999999999987 889999999999999 99999999


Q ss_pred             HHHhcCCCCCC
Q 042183          168 AILKNCTSVSH  178 (179)
Q Consensus       168 ~Ll~~g~~~~~  178 (179)
                      +|+++|+++|.
T Consensus       591 LLlk~GA~vna  601 (1143)
T KOG4177|consen  591 LLLKHGASVNA  601 (1143)
T ss_pred             HHHHcCCCCCc
Confidence            99999999874

>PHA02876 ankyrin repeat protein; Provisional

Probab=99.82  E-value=4e-19  Score=145.25  Aligned_cols=140  Identities=17%  Similarity=0.136  Sum_probs=89.2

Q ss_pred             cCCHHHHHHHHcCChH-HHHHHHHHHHHhhCcccccccCCCCCcHHHHHHHHcC-CHHHHHHHHHhhcccCCchhh----
Q 042183           29 QIDPNLFKAAAAGNLE-PFKDMAREEILEICPSLLLQVNAKGDSRSLLVAAKFG-HCDIVSVLIERAKLLQHEDEE----  102 (179)
Q Consensus        29 ~~~~~l~~A~~~g~~~-~~~~ll~~~~~~~~~~~~~~~~~~g~t~~L~~A~~~g-~~~~v~~ll~~~~~~~~~~~~----  102 (179)
                      ...+|||.|+..|+.. +++.|++      .+..++..|..|.| |||+|+..| ..++++.|+..|++++.....    
T Consensus       272 ~g~TpLh~Aa~~~~~~~iv~lLl~------~gadin~~d~~g~T-pLh~Aa~~g~~~~~v~~Ll~~gadin~~d~~g~Tp  344 (682)
T PHA02876        272 CKNTPLHHASQAPSLSRLVPKLLE------RGADVNAKNIKGET-PLYLMAKNGYDTENIRTLIMLGADVNAADRLYITP  344 (682)
T ss_pred             CCCCHHHHHHhCCCHHHHHHHHHH------CCCCCCCcCCCCCC-HHHHHHHhCCCHHHHHHHHHcCCCCCCcccCCCcH
Confidence            3568899999999874 5555555      66677888888999 999999888 578888888888877661110    


Q ss_pred             ------------------hhhHHHHhccCCCCcHHHHHHHcCCHHHHHHHHhcCCCCCCCCCCCCCCHHHHHHHhcCC-H
Q 042183          103 ------------------LESGMIRMMNKEKHTALHEAVFHKIVDVVKILTREDLDYPYSANNYNKTPLCMVAEYEHS-S  163 (179)
Q Consensus       103 ------------------~~~~~~~~~~~~g~t~l~~A~~~g~~~~~~~Ll~~~~~~~~~~~~~g~tpl~~A~~~~~~-~  163 (179)
                                        ..+..++.+|..|.||||+|+..|+.+++++|++.|+++. ..+..|.||||+|+. .+. .
T Consensus       345 Lh~A~~~~~~~~iv~lLl~~gadin~~d~~G~TpLh~Aa~~~~~~iv~~Ll~~gad~~-~~~~~g~T~Lh~A~~-~~~~~  422 (682)
T PHA02876        345 LHQASTLDRNKDIVITLLELGANVNARDYCDKTPIHYAAVRNNVVIINTLLDYGADIE-ALSQKIGTALHFALC-GTNPY  422 (682)
T ss_pred             HHHHHHhCCcHHHHHHHHHcCCCCccCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCcc-ccCCCCCchHHHHHH-cCCHH
Confidence                              1111223455556666666666666666666666665544 455555566666655 333 3


Q ss_pred             HHHHHHHhcCCCCC
Q 042183          164 HMVVAILKNCTSVS  177 (179)
Q Consensus       164 ~~~~~Ll~~g~~~~  177 (179)
                      .++++|+++|++++
T Consensus       423 ~~vk~Ll~~gadin  436 (682)
T PHA02876        423 MSVKTLIDRGANVN  436 (682)
T ss_pred             HHHHHHHhCCCCCC
Confidence            44556666665554

>PF12796 Ank_2: Ankyrin repeats (3 copies); InterPro: IPR020683 This entry represents the ankyrin repeat-containing domain

Probab=99.82  E-value=1.8e-19  Score=110.54  Aligned_cols=89  Identities=31%  Similarity=0.360  Sum_probs=77.1

Q ss_pred             HHHHHHcCChHHHHHHHHHHHHhhCcccccccCCCCCcHHHHHHHHcCCHHHHHHHHHhhcccCCchhhhhhHHHHhccC
Q 042183           34 LFKAAAAGNLEPFKDMAREEILEICPSLLLQVNAKGDSRSLLVAAKFGHCDIVSVLIERAKLLQHEDEELESGMIRMMNK  113 (179)
Q Consensus        34 l~~A~~~g~~~~~~~ll~~~~~~~~~~~~~~~~~~g~t~~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~~~~~~~~~~~  113 (179)
                      ||.|++.|+.++++.|++      .+..++.    |.+ |||+|+.+|+.+++++|+++|++++.            ++.
T Consensus         1 L~~A~~~~~~~~~~~ll~------~~~~~~~----~~~-~l~~A~~~~~~~~~~~Ll~~g~~~~~------------~~~   57 (89)
T PF12796_consen    1 LHIAAQNGNLEILKFLLE------KGADINL----GNT-ALHYAAENGNLEIVKLLLENGADINS------------QDK   57 (89)
T ss_dssp             HHHHHHTTTHHHHHHHHH------TTSTTTS----SSB-HHHHHHHTTTHHHHHHHHHTTTCTT-------------BST
T ss_pred             CHHHHHcCCHHHHHHHHH------CcCCCCC----CCC-HHHHHHHcCCHHHHHHHHHhcccccc------------cCC
Confidence            789999999999999987      3333333    889 99999999999999999999998887            899


Q ss_pred             CCCcHHHHHHHcCCHHHHHHHHhcCCCCCCCCC
Q 042183          114 EKHTALHEAVFHKIVDVVKILTREDLDYPYSAN  146 (179)
Q Consensus       114 ~g~t~l~~A~~~g~~~~~~~Ll~~~~~~~~~~~  146 (179)
                      .|+||||+|+..|+.+++++|++.|++++ .+|
T Consensus        58 ~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~-~~n   89 (89)
T PF12796_consen   58 NGNTALHYAAENGNLEIVKLLLEHGADVN-IRN   89 (89)
T ss_dssp             TSSBHHHHHHHTTHHHHHHHHHHTTT-TT-SS-
T ss_pred             CCCCHHHHHHHcCCHHHHHHHHHcCCCCC-CcC
Confidence            99999999999999999999999999875 443

These domains contain multiple repeats of a beta(2)-alpha(2) motif. The ankyrin repeat is one of the most common protein-protein interaction motifs in nature. Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].; PDB: 3AAA_C 3F6Q_A 2KBX_A 3IXE_A 3TWR_D 3TWV_A 3TWT_B 3TWQ_A 3TWS_A 3TWX_B ....

>KOG0514 consensus Ankyrin repeat protein [General function prediction only]

Probab=99.81  E-value=6.7e-20  Score=133.50  Aligned_cols=131  Identities=18%  Similarity=0.238  Sum_probs=107.8

Q ss_pred             CccccCCHHHHHHHHcCChHHHHHHHH----------------------------------HHHHhhCcccccccC-CCC
Q 042183           25 ISQLQIDPNLFKAAAAGNLEPFKDMAR----------------------------------EEILEICPSLLLQVN-AKG   69 (179)
Q Consensus        25 ~~~~~~~~~l~~A~~~g~~~~~~~ll~----------------------------------~~~~~~~~~~~~~~~-~~g   69 (179)
                      +.....++.||+|+..+++++|+.||+                                  +.++. .+ ++|.+- .-|
T Consensus       263 laDsNGNTALHYsVSHaNF~VV~~LLDSgvC~VD~qNrAGYtpiMLaALA~lk~~~d~~vV~~LF~-mg-nVNaKAsQ~g  340 (452)
T KOG0514|consen  263 LADSNGNTALHYAVSHANFDVVSILLDSGVCDVDQQNRAGYTPVMLAALAKLKQPADRTVVERLFK-MG-DVNAKASQHG  340 (452)
T ss_pred             hhcCCCCeeeeeeecccchHHHHHHhccCcccccccccccccHHHHHHHHhhcchhhHHHHHHHHh-cc-Ccchhhhhhc
Confidence            334556788999999999999999998                                  11111 12 344433 567


Q ss_pred             CcHHHHHHHHcCCHHHHHHHHHhhcccCCchhhhhhHHHHhccCCCCcHHHHHHHcCCHHHHHHHHhc-CCCCCCCCCCC
Q 042183           70 DSRSLLVAAKFGHCDIVSVLIERAKLLQHEDEELESGMIRMMNKEKHTALHEAVFHKIVDVVKILTRE-DLDYPYSANNY  148 (179)
Q Consensus        70 ~t~~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~~~~~~~~~~~~g~t~l~~A~~~g~~~~~~~Ll~~-~~~~~~~~~~~  148 (179)
                      .| +|++|+.+|+.++|+.||.+|+++|.            +|.+|.|+|++||.+||++++++||.. +++.. ..|.+
T Consensus       341 QT-ALMLAVSHGr~d~vk~LLacgAdVNi------------QDdDGSTALMCA~EHGhkEivklLLA~p~cd~s-LtD~D  406 (452)
T KOG0514|consen  341 QT-ALMLAVSHGRVDMVKALLACGADVNI------------QDDDGSTALMCAAEHGHKEIVKLLLAVPSCDIS-LTDVD  406 (452)
T ss_pred             ch-hhhhhhhcCcHHHHHHHHHccCCCcc------------ccCCccHHHhhhhhhChHHHHHHHhccCcccce-eecCC
Confidence            78 99999999999999999999998887            999999999999999999999999987 56655 89999


Q ss_pred             CCCHHHHHHHhcCCHHHHHHHHhc
Q 042183          149 NKTPLCMVAEYEHSSHMVVAILKN  172 (179)
Q Consensus       149 g~tpl~~A~~~~~~~~~~~~Ll~~  172 (179)
                      |.|+|.+|.. .||.||.-+|..+
T Consensus       407 gSTAl~IAle-agh~eIa~mlYa~  429 (452)
T KOG0514|consen  407 GSTALSIALE-AGHREIAVMLYAH  429 (452)
T ss_pred             CchhhhhHHh-cCchHHHHHHHHH
Confidence            9999999999 9999998888654

>PHA02741 hypothetical protein; Provisional

Probab=99.81  E-value=6.6e-19  Score=120.49  Aligned_cols=108  Identities=13%  Similarity=0.152  Sum_probs=88.4

Q ss_pred             ccccCCCCCcHHHHHHHHcCCHHHHHHHHHhhcccCCchhhhhhHHHHhccCCCCcHHHHHHHcCC----HHHHHHHHhc
Q 042183           62 LLQVNAKGDSRSLLVAAKFGHCDIVSVLIERAKLLQHEDEELESGMIRMMNKEKHTALHEAVFHKI----VDVVKILTRE  137 (179)
Q Consensus        62 ~~~~~~~g~t~~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~~~~~~~~~~~~g~t~l~~A~~~g~----~~~~~~Ll~~  137 (179)
                      ++.++..|.| +||+|++.|+.++++.|+.......      .+..++.+|..|+||||+|+..|+    .+++++|+..
T Consensus        14 ~~~~~~~g~t-~Lh~Aa~~g~~~~v~~l~~~~~~~~------~ga~in~~d~~g~T~Lh~A~~~g~~~~~~~ii~~Ll~~   86 (169)
T PHA02741         14 IAEKNSEGEN-FFHEAARCGCFDIIARFTPFIRGDC------HAAALNATDDAGQMCIHIAAEKHEAQLAAEIIDHLIEL   86 (169)
T ss_pred             hhccccCCCC-HHHHHHHcCCHHHHHHHHHHhccch------hhhhhhccCCCCCcHHHHHHHcCChHHHHHHHHHHHHc
Confidence            3557889999 9999999999999999865421000      012344589999999999999999    5889999999


Q ss_pred             CCCCCCCCCC-CCCCHHHHHHHhcCCHHHHHHHHh-cCCCCCC
Q 042183          138 DLDYPYSANN-YNKTPLCMVAEYEHSSHMVVAILK-NCTSVSH  178 (179)
Q Consensus       138 ~~~~~~~~~~-~g~tpl~~A~~~~~~~~~~~~Ll~-~g~~~~~  178 (179)
                      |++++ .++. .|+||||+|+. .++.+++++|+. .|++++.
T Consensus        87 gadin-~~~~~~g~TpLh~A~~-~~~~~iv~~Ll~~~g~~~~~  127 (169)
T PHA02741         87 GADIN-AQEMLEGDTALHLAAH-RRDHDLAEWLCCQPGIDLHF  127 (169)
T ss_pred             CCCCC-CCCcCCCCCHHHHHHH-cCCHHHHHHHHhCCCCCCCc
Confidence            99986 6774 89999999999 999999999997 4887653

>PHA02884 ankyrin repeat protein; Provisional

Probab=99.81  E-value=6.7e-19  Score=129.31  Aligned_cols=103  Identities=17%  Similarity=0.138  Sum_probs=92.4

Q ss_pred             ccccCCCCCcHHHHHHHHcCCHHHHHHHHHhhcccCCchhhhhhHHHHhc----cCCCCcHHHHHHHcCCHHHHHHHHhc
Q 042183           62 LLQVNAKGDSRSLLVAAKFGHCDIVSVLIERAKLLQHEDEELESGMIRMM----NKEKHTALHEAVFHKIVDVVKILTRE  137 (179)
Q Consensus        62 ~~~~~~~g~t~~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~~~~~~~~~----~~~g~t~l~~A~~~g~~~~~~~Ll~~  137 (179)
                      +..+|..|.+++||.|+..|+.+++++|+++|++++.            +    +..|.||||+|+..++.+++++|+++
T Consensus        25 ~~~~d~~~~~~lL~~A~~~~~~eivk~LL~~GAdiN~------------~~~~sd~~g~TpLh~Aa~~~~~eivklLL~~   92 (300)
T PHA02884         25 IKKKNKICIANILYSSIKFHYTDIIDAILKLGADPEA------------PFPLSENSKTNPLIYAIDCDNDDAAKLLIRY   92 (300)
T ss_pred             hhccCcCCCCHHHHHHHHcCCHHHHHHHHHCCCCccc------------cCcccCCCCCCHHHHHHHcCCHHHHHHHHHc
Confidence            3457889999678888999999999999999998876            5    45899999999999999999999999


Q ss_pred             CCCCCCCC-CCCCCCHHHHHHHhcCCHHHHHHHHhcCCCCCC
Q 042183          138 DLDYPYSA-NNYNKTPLCMVAEYEHSSHMVVAILKNCTSVSH  178 (179)
Q Consensus       138 ~~~~~~~~-~~~g~tpl~~A~~~~~~~~~~~~Ll~~g~~~~~  178 (179)
                      |++++ .. +..|.||||+|+. .++.+++++|+..|++++.
T Consensus        93 GADVN-~~~~~~g~TpLh~Aa~-~~~~eivklLL~~GAdin~  132 (300)
T PHA02884         93 GADVN-RYAEEAKITPLYISVL-HGCLKCLEILLSYGADINI  132 (300)
T ss_pred             CCCcC-cccCCCCCCHHHHHHH-cCCHHHHHHHHHCCCCCCC
Confidence            99987 54 5679999999999 9999999999999998864

>PHA02917 ankyrin-like protein; Provisional

Probab=99.81  E-value=8.8e-19  Score=141.57  Aligned_cols=135  Identities=16%  Similarity=0.054  Sum_probs=105.1

Q ss_pred             HHHHHHHHcCChHHHHHHHHHHHHhhCcccccccCCCCCcHHHHHHH--HcCCHHHHHHHHHhhcccCCchhh-hhh-HH
Q 042183           32 PNLFKAAAAGNLEPFKDMAREEILEICPSLLLQVNAKGDSRSLLVAA--KFGHCDIVSVLIERAKLLQHEDEE-LES-GM  107 (179)
Q Consensus        32 ~~l~~A~~~g~~~~~~~ll~~~~~~~~~~~~~~~~~~g~t~~L~~A~--~~g~~~~v~~ll~~~~~~~~~~~~-~~~-~~  107 (179)
                      ..++.|+..|+.++++.|++      .+..++..|..|.| |||.|+  ..|+.+++++|+++|++++..... ..+ ..
T Consensus       105 ~~~~~a~~~~~~e~vk~Ll~------~Gadin~~d~~g~T-~L~~~~a~~~~~~eivklLi~~Ga~vn~~d~~~~~g~~~  177 (661)
T PHA02917        105 IFSYMKSKNVDVDLIKVLVE------HGFDLSVKCENHRS-VIENYVMTDDPVPEIIDLFIENGCSVLYEDEDDEYGYAY  177 (661)
T ss_pred             hHHHHHhhcCCHHHHHHHHH------cCCCCCccCCCCcc-HHHHHHHccCCCHHHHHHHHHcCCCcccccccccccccc
Confidence            55677888888888888887      78899999999999 999654  578999999999999988651000 000 00


Q ss_pred             HHhccCCCCcHHHHHHH-----------cCCHHHHHHHHhcCCCCCCCCCCCCCCHHHHHHHhcCCH--HHHHHHHhcCC
Q 042183          108 IRMMNKEKHTALHEAVF-----------HKIVDVVKILTREDLDYPYSANNYNKTPLCMVAEYEHSS--HMVVAILKNCT  174 (179)
Q Consensus       108 ~~~~~~~g~t~l~~A~~-----------~g~~~~~~~Ll~~~~~~~~~~~~~g~tpl~~A~~~~~~~--~~~~~Ll~~g~  174 (179)
                      .......+.||||+|+.           +++.+++++|++.|++++ .+|..|.||||+|+. .|+.  +++++|++ |+
T Consensus       178 ~~~~~~~~~t~L~~a~~~~~~~~~~~~~~~~~eiv~~Li~~Gadvn-~~d~~G~TpLh~A~~-~g~~~~eivk~Li~-g~  254 (661)
T PHA02917        178 DDYQPRNCGTVLHLYIISHLYSESDTRAYVRPEVVKCLINHGIKPS-SIDKNYCTALQYYIK-SSHIDIDIVKLLMK-GI  254 (661)
T ss_pred             ccccccccccHHHHHHhhcccccccccccCcHHHHHHHHHCCCCcc-cCCCCCCcHHHHHHH-cCCCcHHHHHHHHh-CC
Confidence            00111234699999986           568999999999999987 899999999999999 9985  79999975 76


Q ss_pred             CC
Q 042183          175 SV  176 (179)
Q Consensus       175 ~~  176 (179)
                      ++
T Consensus       255 d~  256 (661)
T PHA02917        255 DN  256 (661)
T ss_pred             cc
Confidence            54

>PHA02917 ankyrin-like protein; Provisional

Probab=99.79  E-value=2.8e-18  Score=138.69  Aligned_cols=127  Identities=15%  Similarity=0.083  Sum_probs=105.1

Q ss_pred             cCCHHHHHHHHc---CChHHHHHHHHHHHHhhCcccccccCCCCCcHHHHHHHHcCCHH----HHHHHHHhhcccCCchh
Q 042183           29 QIDPNLFKAAAA---GNLEPFKDMAREEILEICPSLLLQVNAKGDSRSLLVAAKFGHCD----IVSVLIERAKLLQHEDE  101 (179)
Q Consensus        29 ~~~~~l~~A~~~---g~~~~~~~ll~~~~~~~~~~~~~~~~~~g~t~~L~~A~~~g~~~----~v~~ll~~~~~~~~~~~  101 (179)
                      ...+|||.|+..   |+.+.++.|++      .+..++..+..|.| |||+|+..|+.+    +++.|++.+...+.   
T Consensus        31 ~g~t~Lh~a~~~~~~~~~~~v~~Ll~------~ga~v~~~~~~g~T-pL~~Aa~~g~~~v~~~~~~~Ll~~~~~~n~---  100 (661)
T PHA02917         31 FKNNALHAYLFNEHCNNVEVVKLLLD------SGTNPLHKNWRQLT-PLEEYTNSRHVKVNKDIAMALLEATGYSNI---  100 (661)
T ss_pred             CCCcHHHHHHHhhhcCcHHHHHHHHH------CCCCccccCCCCCC-HHHHHHHcCChhHHHHHHHHHHhccCCCCC---
Confidence            356999997665   88999999998      77788889999999 999999999854    56777776543332   


Q ss_pred             hhhhHHHHhccCCCCcHHHHHHHcCCHHHHHHHHhcCCCCCCCCCCCCCCHHHHHH--HhcCCHHHHHHHHhcCCCCCC
Q 042183          102 ELESGMIRMMNKEKHTALHEAVFHKIVDVVKILTREDLDYPYSANNYNKTPLCMVA--EYEHSSHMVVAILKNCTSVSH  178 (179)
Q Consensus       102 ~~~~~~~~~~~~~g~t~l~~A~~~g~~~~~~~Ll~~~~~~~~~~~~~g~tpl~~A~--~~~~~~~~~~~Ll~~g~~~~~  178 (179)
                               .+  ..++++.|+..|+.+++++|++.|++++ .+|..|.|||+.|+  . .|+.+++++|+++|+++++
T Consensus       101 ---------~~--~~~~~~~a~~~~~~e~vk~Ll~~Gadin-~~d~~g~T~L~~~~a~~-~~~~eivklLi~~Ga~vn~  166 (661)
T PHA02917        101 ---------ND--FNIFSYMKSKNVDVDLIKVLVEHGFDLS-VKCENHRSVIENYVMTD-DPVPEIIDLFIENGCSVLY  166 (661)
T ss_pred             ---------CC--cchHHHHHhhcCCHHHHHHHHHcCCCCC-ccCCCCccHHHHHHHcc-CCCHHHHHHHHHcCCCccc
Confidence                     22  3367788999999999999999999987 89999999999653  5 7899999999999998853

>KOG0502 consensus Integral membrane ankyrin-repeat protein Kidins220 (protein kinase D substrate) [General function prediction only]

Probab=99.78  E-value=6.7e-19  Score=120.52  Aligned_cols=123  Identities=19%  Similarity=0.103  Sum_probs=109.6

Q ss_pred             ccCCHHHHHHHHcCChHHHHHHHHHHHHhhCcccccccCCCCCcHHHHHHHHcCCHHHHHHHHHhhcccCCchhhhhhHH
Q 042183           28 LQIDPNLFKAAAAGNLEPFKDMAREEILEICPSLLLQVNAKGDSRSLLVAAKFGHCDIVSVLIERAKLLQHEDEELESGM  107 (179)
Q Consensus        28 ~~~~~~l~~A~~~g~~~~~~~ll~~~~~~~~~~~~~~~~~~g~t~~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~~~~~  107 (179)
                      .+.-+||.+|+..|++..|+.|+.      .+.+........++ +|.+|++.|..++|++||.++.+++.         
T Consensus       158 e~GfTpLiWAaa~G~i~vV~fLL~------~GAdp~~lgk~res-ALsLAt~ggytdiV~lLL~r~vdVNv---------  221 (296)
T KOG0502|consen  158 EFGFTPLIWAAAKGHIPVVQFLLN------SGADPDALGKYRES-ALSLATRGGYTDIVELLLTREVDVNV---------  221 (296)
T ss_pred             ccCchHhHHHHhcCchHHHHHHHH------cCCChhhhhhhhhh-hHhHHhcCChHHHHHHHHhcCCCcce---------
Confidence            344589999999999999999998      66676777777888 99999999999999999999998877         


Q ss_pred             HHhccCCCCcHHHHHHHcCCHHHHHHHHhcCCCCCCCCCCCCCCHHHHHHHhcCCHHHHHHHHhc
Q 042183          108 IRMMNKEKHTALHEAVFHKIVDVVKILTREDLDYPYSANNYNKTPLCMVAEYEHSSHMVVAILKN  172 (179)
Q Consensus       108 ~~~~~~~g~t~l~~A~~~g~~~~~~~Ll~~~~~~~~~~~~~g~tpl~~A~~~~~~~~~~~~Ll~~  172 (179)
                         .|.+|-|||.+|++.+|.+|++-|+..|+++. ..+..|.+++..|+. .|+. +++.++++
T Consensus       222 ---yDwNGgTpLlyAvrgnhvkcve~Ll~sGAd~t-~e~dsGy~~mdlAVa-lGyr-~Vqqvie~  280 (296)
T KOG0502|consen  222 ---YDWNGGTPLLYAVRGNHVKCVESLLNSGADVT-QEDDSGYWIMDLAVA-LGYR-IVQQVIEK  280 (296)
T ss_pred             ---eccCCCceeeeeecCChHHHHHHHHhcCCCcc-cccccCCcHHHHHHH-hhhH-HHHHHHHH
Confidence               99999999999999999999999999999987 888999999999999 9977 55555544

>cd00204 ANK ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins

Probab=99.77  E-value=3.1e-17  Score=105.99  Aligned_cols=121  Identities=29%  Similarity=0.362  Sum_probs=107.9

Q ss_pred             cCCHHHHHHHHcCChHHHHHHHHHHHHhhCcccccccCCCCCcHHHHHHHHcCCHHHHHHHHHhhcccCCchhhhhhHHH
Q 042183           29 QIDPNLFKAAAAGNLEPFKDMAREEILEICPSLLLQVNAKGDSRSLLVAAKFGHCDIVSVLIERAKLLQHEDEELESGMI  108 (179)
Q Consensus        29 ~~~~~l~~A~~~g~~~~~~~ll~~~~~~~~~~~~~~~~~~g~t~~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~~~~~~  108 (179)
                      ...++||.|+..|+.+.++.|++      .+...+..+..|.+ |||+|+..+..+++++|++.+...+.          
T Consensus         6 ~g~t~l~~a~~~~~~~~i~~li~------~~~~~~~~~~~g~~-~l~~a~~~~~~~~~~~ll~~~~~~~~----------   68 (126)
T cd00204           6 DGRTPLHLAASNGHLEVVKLLLE------NGADVNAKDNDGRT-PLHLAAKNGHLEIVKLLLEKGADVNA----------   68 (126)
T ss_pred             CCCCHHHHHHHcCcHHHHHHHHH------cCCCCCccCCCCCc-HHHHHHHcCCHHHHHHHHHcCCCccc----------
Confidence            35689999999999999999987      44455778899999 99999999999999999999876655          


Q ss_pred             HhccCCCCcHHHHHHHcCCHHHHHHHHhcCCCCCCCCCCCCCCHHHHHHHhcCCHHHHHHHH
Q 042183          109 RMMNKEKHTALHEAVFHKIVDVVKILTREDLDYPYSANNYNKTPLCMVAEYEHSSHMVVAIL  170 (179)
Q Consensus       109 ~~~~~~g~t~l~~A~~~g~~~~~~~Ll~~~~~~~~~~~~~g~tpl~~A~~~~~~~~~~~~Ll  170 (179)
                        .+..|.||+|+|+..++.+++++|+..+.+.. ..+..+.||++.|.. .++.+++++|+
T Consensus        69 --~~~~~~~~l~~a~~~~~~~~~~~L~~~~~~~~-~~~~~~~~~l~~~~~-~~~~~~~~~Ll  126 (126)
T cd00204          69 --RDKDGNTPLHLAARNGNLDVVKLLLKHGADVN-ARDKDGRTPLHLAAK-NGHLEVVKLLL  126 (126)
T ss_pred             --cCCCCCCHHHHHHHcCcHHHHHHHHHcCCCCc-ccCCCCCCHHHHHHh-cCCHHHHHHhC
Confidence              78889999999999999999999999987765 678899999999999 99999999874

The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other types of domains. The structural repeat unit contains two antiparallel helices and a beta-hairpin, repeats are stacked in a superhelical arrangement; this alignment contains 4 consecutive repeats.

>PHA02730 ankyrin-like protein; Provisional

Probab=99.77  E-value=7.9e-18  Score=134.21  Aligned_cols=127  Identities=12%  Similarity=0.092  Sum_probs=105.2

Q ss_pred             CCHHHHHHHHcCC----hHHHHHHHHHHHHhhCcc--cccccCCCCCcHHHHH---HHHcC---------CHHHHHHHHH
Q 042183           30 IDPNLFKAAAAGN----LEPFKDMAREEILEICPS--LLLQVNAKGDSRSLLV---AAKFG---------HCDIVSVLIE   91 (179)
Q Consensus        30 ~~~~l~~A~~~g~----~~~~~~ll~~~~~~~~~~--~~~~~~~~g~t~~L~~---A~~~g---------~~~~v~~ll~   91 (179)
                      ..+|||.|+..++    .++++.|++      .+.  .++.+|..|.| |||.   |...+         ..+++++|++
T Consensus       378 G~TpLH~Aa~~nnn~i~~eIvelLIs------~Ga~~dIN~kd~~G~T-~Lh~~i~a~~~n~~~~~~e~~~~~ivk~LIs  450 (672)
T PHA02730        378 NNYPLHDYFVNNNNIVDVNVVRFIVE------NNGHMAINHVSNNGRL-CMYGLILSRFNNCGYHCYETILIDVFDILSK  450 (672)
T ss_pred             CCcHHHHHHHHcCCcchHHHHHHHHH------cCCCccccccccCCCc-hHhHHHHHHhccccccccchhHHHHHHHHHh
Confidence            4588998888875    799988887      443  57778888999 9984   33232         2356899999


Q ss_pred             hhcccCCchhhhhhHHHHhccCCCCcHHHHHHHcCCHHHHHHHHhcCCCCCCCCCC-CCCCHHHHHHHhc--CCHHHHHH
Q 042183           92 RAKLLQHEDEELESGMIRMMNKEKHTALHEAVFHKIVDVVKILTREDLDYPYSANN-YNKTPLCMVAEYE--HSSHMVVA  168 (179)
Q Consensus        92 ~~~~~~~~~~~~~~~~~~~~~~~g~t~l~~A~~~g~~~~~~~Ll~~~~~~~~~~~~-~g~tpl~~A~~~~--~~~~~~~~  168 (179)
                      +|++++.            +|..|+||||+|+..++.+++++|++.|++++ ..+. .|.|||++|+. .  ++.+++++
T Consensus       451 ~GADINa------------kD~~G~TPLh~Aa~~~~~eive~LI~~GAdIN-~~d~~~g~TaL~~Aa~-~~~~~~eIv~~  516 (672)
T PHA02730        451 YMDDIDM------------IDNENKTLLYYAVDVNNIQFARRLLEYGASVN-TTSRSIINTAIQKSSY-RRENKTKLVDL  516 (672)
T ss_pred             cccchhc------------cCCCCCCHHHHHHHhCCHHHHHHHHHCCCCCC-CCCCcCCcCHHHHHHH-hhcCcHHHHHH
Confidence            9987777            99999999999999999999999999999987 7786 59999999997 5  78999999


Q ss_pred             HHhcCCCCC
Q 042183          169 ILKNCTSVS  177 (179)
Q Consensus       169 Ll~~g~~~~  177 (179)
                      |+++|++.+
T Consensus       517 LLs~ga~i~  525 (672)
T PHA02730        517 LLSYHPTLE  525 (672)
T ss_pred             HHHcCCCHH
Confidence            999998753

>KOG0505 consensus Myosin phosphatase, regulatory subunit [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=99.77  E-value=2.1e-18  Score=130.96  Aligned_cols=145  Identities=19%  Similarity=0.167  Sum_probs=123.5

Q ss_pred             CCccccCCHHHHHHHHcCChHHHHHHHHHHHHhhCcccccccCCCCCcHHHHHHHHcCCHHHHHHHHHhhcccCCchhh-
Q 042183           24 EISQLQIDPNLFKAAAAGNLEPFKDMAREEILEICPSLLLQVNAKGDSRSLLVAAKFGHCDIVSVLIERAKLLQHEDEE-  102 (179)
Q Consensus        24 ~~~~~~~~~~l~~A~~~g~~~~~~~ll~~~~~~~~~~~~~~~~~~g~t~~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~-  102 (179)
                      ...+....+.||.+|...+.++|+++++      .+..++..|..|+| |||.|+..|+..++.+|+++|++...-... 
T Consensus        67 ~~~n~DglTalhq~~id~~~e~v~~l~e------~ga~Vn~~d~e~wt-Plhaaascg~~~i~~~li~~gA~~~avNsdg  139 (527)
T KOG0505|consen   67 NLCNVDGLTALHQACIDDNLEMVKFLVE------NGANVNAQDNEGWT-PLHAAASCGYLNIVEYLIQHGANLLAVNSDG  139 (527)
T ss_pred             cccCCccchhHHHHHhcccHHHHHHHHH------hcCCccccccccCC-cchhhcccccHHHHHHHHHhhhhhhhccCCC
Confidence            4445666799999999999999999998      88899999999999 999999999999999999999765431111 


Q ss_pred             ----------------------------------------------hhhHHHHhccCCCCcHHHHHHHcCCHHHHHHHHh
Q 042183          103 ----------------------------------------------LESGMIRMMNKEKHTALHEAVFHKIVDVVKILTR  136 (179)
Q Consensus       103 ----------------------------------------------~~~~~~~~~~~~g~t~l~~A~~~g~~~~~~~Ll~  136 (179)
                                                                    -.+....+.+..|-|+||+|+..|..++.++|++
T Consensus       140 ~~P~dl~e~ea~~~~l~~~~~r~gi~iea~R~~~e~~ml~D~~q~l~~G~~~d~~~~rG~T~lHvAaa~Gy~e~~~lLl~  219 (527)
T KOG0505|consen  140 NMPYDLAEDEATLDVLETEMARQGIDIEAARKAEEQTMLDDARQWLNAGAELDARHARGATALHVAAANGYTEVAALLLQ  219 (527)
T ss_pred             CCccccccCcchhHHHHHHHHHhcccHHHHhhhhHHHHHHHHHHHHhccccccccccccchHHHHHHhhhHHHHHHHHHH
Confidence                                                          1111223444559999999999999999999999


Q ss_pred             cCCCCCCCCCCCCCCHHHHHHHhcCCHHHHHHHHhcCCCCC
Q 042183          137 EDLDYPYSANNYNKTPLCMVAEYEHSSHMVVAILKNCTSVS  177 (179)
Q Consensus       137 ~~~~~~~~~~~~g~tpl~~A~~~~~~~~~~~~Ll~~g~~~~  177 (179)
                      .|.++. .+|.+||||||.|+. =|+.+++++|+++|++.+
T Consensus       220 ag~~~~-~~D~dgWtPlHAAA~-Wg~~~~~elL~~~ga~~d  258 (527)
T KOG0505|consen  220 AGYSVN-IKDYDGWTPLHAAAH-WGQEDACELLVEHGADMD  258 (527)
T ss_pred             hccCcc-cccccCCCcccHHHH-hhhHhHHHHHHHhhcccc
Confidence            999976 899999999999999 999999999999998765

>KOG0195 consensus Integrin-linked kinase [Signal transduction mechanisms]

Probab=99.76  E-value=4.6e-18  Score=120.95  Aligned_cols=141  Identities=23%  Similarity=0.198  Sum_probs=109.1

Q ss_pred             hhhcccCCCCccccCC---HHHHHHHHcCChHHHHHHHHHHHHhhCcccccccCCCCCcHHHHHHHHcCCHHHHHHHHHh
Q 042183           16 ASLLDNNGEISQLQID---PNLFKAAAAGNLEPFKDMAREEILEICPSLLLQVNAKGDSRSLLVAAKFGHCDIVSVLIER   92 (179)
Q Consensus        16 ~~~~~~~~~~~~~~~~---~~l~~A~~~g~~~~~~~ll~~~~~~~~~~~~~~~~~~g~t~~L~~A~~~g~~~~v~~ll~~   92 (179)
                      --|++......+...+   +|||.||+.|+..+++-|+.      .+.-+|..+--..| |||+|+..|+.++|..|++.
T Consensus        17 rlwld~tehdln~gddhgfsplhwaakegh~aivemll~------rgarvn~tnmgddt-plhlaaahghrdivqkll~~   89 (448)
T KOG0195|consen   17 RLWLDDTEHDLNVGDDHGFSPLHWAAKEGHVAIVEMLLS------RGARVNSTNMGDDT-PLHLAAAHGHRDIVQKLLSR   89 (448)
T ss_pred             EEEecCcccccccccccCcchhhhhhhcccHHHHHHHHh------cccccccccCCCCc-chhhhhhcccHHHHHHHHHH
Confidence            3355554443333322   78999999999999988887      66677777766667 99999999999999999999


Q ss_pred             hcccCCchhhhhhHHHHhccCCCCcHHHHHHHcCCHHHHHHHHhcCCCCCCCCCCCCCCHHHHHHHhcCCHHHHHHHHhc
Q 042183           93 AKLLQHEDEELESGMIRMMNKEKHTALHEAVFHKIVDVVKILTREDLDYPYSANNYNKTPLCMVAEYEHSSHMVVAILKN  172 (179)
Q Consensus        93 ~~~~~~~~~~~~~~~~~~~~~~g~t~l~~A~~~g~~~~~~~Ll~~~~~~~~~~~~~g~tpl~~A~~~~~~~~~~~~Ll~~  172 (179)
                      .++.+.            .+.-|+||||+||..|.-.+++-|+..|+.++ .++..|.|||..|-. .-...+...--++
T Consensus        90 kadvna------------vnehgntplhyacfwgydqiaedli~~ga~v~-icnk~g~tpldkakp-~l~~~l~e~aek~  155 (448)
T KOG0195|consen   90 KADVNA------------VNEHGNTPLHYACFWGYDQIAEDLISCGAAVN-ICNKKGMTPLDKAKP-MLKNTLLEIAEKH  155 (448)
T ss_pred             hcccch------------hhccCCCchhhhhhhcHHHHHHHHHhccceee-ecccCCCCchhhhch-HHHHHHHHHHHHh
Confidence            887777            89999999999999999999999999999987 899999999998865 4333344444445


Q ss_pred             CCCCC
Q 042183          173 CTSVS  177 (179)
Q Consensus       173 g~~~~  177 (179)
                      |-+++
T Consensus       156 gq~~n  160 (448)
T KOG0195|consen  156 GQSPN  160 (448)
T ss_pred             CCCCC
Confidence            65554

>KOG0195 consensus Integrin-linked kinase [Signal transduction mechanisms]

Probab=99.76  E-value=6.2e-19  Score=125.35  Aligned_cols=124  Identities=25%  Similarity=0.224  Sum_probs=108.3

Q ss_pred             HHHHHHcCChHHHHHHHHHHHHhhCcccccccCCCCCcHHHHHHHHcCCHHHHHHHHHhhcccCCchhhhhhHHHHhccC
Q 042183           34 LFKAAAAGNLEPFKDMAREEILEICPSLLLQVNAKGDSRSLLVAAKFGHCDIVSVLIERAKLLQHEDEELESGMIRMMNK  113 (179)
Q Consensus        34 l~~A~~~g~~~~~~~ll~~~~~~~~~~~~~~~~~~g~t~~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~~~~~~~~~~~  113 (179)
                      ++.-|+.|+.-.|+..++     ....++|..|..|.+ |||+||+.|+..+++.|+++|+..+.            .+.
T Consensus         4 if~wcregna~qvrlwld-----~tehdln~gddhgfs-plhwaakegh~aivemll~rgarvn~------------tnm   65 (448)
T KOG0195|consen    4 IFGWCREGNAFQVRLWLD-----DTEHDLNVGDDHGFS-PLHWAAKEGHVAIVEMLLSRGARVNS------------TNM   65 (448)
T ss_pred             hhhhhhcCCeEEEEEEec-----CcccccccccccCcc-hhhhhhhcccHHHHHHHHhccccccc------------ccC
Confidence            444567776666655544     344567889999999 99999999999999999999998877            888


Q ss_pred             CCCcHHHHHHHcCCHHHHHHHHhcCCCCCCCCCCCCCCHHHHHHHhcCCHHHHHHHHhcCCCCC
Q 042183          114 EKHTALHEAVFHKIVDVVKILTREDLDYPYSANNYNKTPLCMVAEYEHSSHMVVAILKNCTSVS  177 (179)
Q Consensus       114 ~g~t~l~~A~~~g~~~~~~~Ll~~~~~~~~~~~~~g~tpl~~A~~~~~~~~~~~~Ll~~g~~~~  177 (179)
                      ..-||||.|+.+||-++|+.|++..+|++ ..+..|.||||+||. -|...++.-|+..|+.++
T Consensus        66 gddtplhlaaahghrdivqkll~~kadvn-avnehgntplhyacf-wgydqiaedli~~ga~v~  127 (448)
T KOG0195|consen   66 GDDTPLHLAAAHGHRDIVQKLLSRKADVN-AVNEHGNTPLHYACF-WGYDQIAEDLISCGAAVN  127 (448)
T ss_pred             CCCcchhhhhhcccHHHHHHHHHHhcccc-hhhccCCCchhhhhh-hcHHHHHHHHHhccceee
Confidence            88999999999999999999999999987 899999999999999 999999999999997664

>PHA02743 Viral ankyrin protein; Provisional

Probab=99.76  E-value=9.9e-18  Score=114.30  Aligned_cols=103  Identities=10%  Similarity=0.200  Sum_probs=86.7

Q ss_pred             cccccCCCCCcHHHHHHHHcCCH----HHHHHHHHhhcccCCchhhhhhHHHHhccCCCCcHHHHHHHcCCHHH---HHH
Q 042183           61 LLLQVNAKGDSRSLLVAAKFGHC----DIVSVLIERAKLLQHEDEELESGMIRMMNKEKHTALHEAVFHKIVDV---VKI  133 (179)
Q Consensus        61 ~~~~~~~~g~t~~L~~A~~~g~~----~~v~~ll~~~~~~~~~~~~~~~~~~~~~~~~g~t~l~~A~~~g~~~~---~~~  133 (179)
                      .++..+.++.+ +||.||+.|+.    +++++|++.+...+.            +|..|+||||+|+..|+.+.   +++
T Consensus        12 ~~~~~~~~~~~-~l~~a~~~g~~~~l~~~~~~l~~~g~~~~~------------~d~~g~t~Lh~Aa~~g~~~~~~~i~~   78 (166)
T PHA02743         12 GAVEIDEDEQN-TFLRICRTGNIYELMEVAPFISGDGHLLHR------------YDHHGRQCTHMVAWYDRANAVMKIEL   78 (166)
T ss_pred             HHhhhccCCCc-HHHHHHHcCCHHHHHHHHHHHhhcchhhhc------------cCCCCCcHHHHHHHhCccCHHHHHHH
Confidence            44557778889 99999999998    566677777765544            89999999999999998654   899


Q ss_pred             HHhcCCCCCCCCC-CCCCCHHHHHHHhcCCHHHHHHHHh-cCCCCCC
Q 042183          134 LTREDLDYPYSAN-NYNKTPLCMVAEYEHSSHMVVAILK-NCTSVSH  178 (179)
Q Consensus       134 Ll~~~~~~~~~~~-~~g~tpl~~A~~~~~~~~~~~~Ll~-~g~~~~~  178 (179)
                      |++.|++++ .++ ..|.||||+|+. .++.+++++|+. .|++++.
T Consensus        79 Ll~~Gadin-~~d~~~g~TpLh~A~~-~g~~~iv~~Ll~~~gad~~~  123 (166)
T PHA02743         79 LVNMGADIN-ARELGTGNTLLHIAAS-TKNYELAEWLCRQLGVNLGA  123 (166)
T ss_pred             HHHcCCCCC-CCCCCCCCcHHHHHHH-hCCHHHHHHHHhccCCCccC
Confidence            999999986 777 589999999999 999999999995 7887653

>KOG4214 consensus Myotrophin and similar proteins [Transcription]

Probab=99.76  E-value=1.3e-17  Score=99.07  Aligned_cols=104  Identities=20%  Similarity=0.179  Sum_probs=88.3

Q ss_pred             HHHHHHHHcCChHHHHHHHHHHHHhhCcccccccCCCCCcHHHHHHHHcCCHHHHHHHHHhhcccCCchhhhhhHHHHhc
Q 042183           32 PNLFKAAAAGNLEPFKDMAREEILEICPSLLLQVNAKGDSRSLLVAAKFGHCDIVSVLIERAKLLQHEDEELESGMIRMM  111 (179)
Q Consensus        32 ~~l~~A~~~g~~~~~~~ll~~~~~~~~~~~~~~~~~~g~t~~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~~~~~~~~~  111 (179)
                      ..+.+++++|.++-|+....      .+.+++. ...|++ |||+|+-+|..++++||+..|++++.            +
T Consensus         4 ~~~~W~vkNG~~DeVk~~v~------~g~nVn~-~~ggR~-plhyAAD~GQl~ilefli~iGA~i~~------------k   63 (117)
T KOG4214|consen    4 MSVAWNVKNGEIDEVKQSVN------EGLNVNE-IYGGRT-PLHYAADYGQLSILEFLISIGANIQD------------K   63 (117)
T ss_pred             hhHhhhhccCcHHHHHHHHH------ccccHHH-HhCCcc-cchHhhhcchHHHHHHHHHhccccCC------------c
Confidence            45778999999999988765      3334442 237888 99999999999999999999999988            9


Q ss_pred             cCCCCcHHHHHHHcCCHHHHHHHHhcCCCCCCCCCCCCCCHHHHH
Q 042183          112 NKEKHTALHEAVFHKIVDVVKILTREDLDYPYSANNYNKTPLCMV  156 (179)
Q Consensus       112 ~~~g~t~l~~A~~~g~~~~~~~Ll~~~~~~~~~~~~~g~tpl~~A  156 (179)
                      |+.|.|||..|++.||.+||++|+++|++.. .+.+.|.+.+..+
T Consensus        64 DKygITPLLsAvwEGH~~cVklLL~~GAdrt-~~~PdG~~~~eat  107 (117)
T KOG4214|consen   64 DKYGITPLLSAVWEGHRDCVKLLLQNGADRT-IHAPDGTALIEAT  107 (117)
T ss_pred             cccCCcHHHHHHHHhhHHHHHHHHHcCcccc-eeCCCchhHHhhc
Confidence            9999999999999999999999999999965 7778887766543

>PHA02730 ankyrin-like protein; Provisional

Probab=99.75  E-value=2.1e-17  Score=131.81  Aligned_cols=131  Identities=13%  Similarity=0.076  Sum_probs=110.0

Q ss_pred             cCCHHHHHHHHcC---ChHHHHHHHHHHHHhhCcccccccCCCCCcHHHHHHHHcC--CHHHHHHHHHhhcccCCchhhh
Q 042183           29 QIDPNLFKAAAAG---NLEPFKDMAREEILEICPSLLLQVNAKGDSRSLLVAAKFG--HCDIVSVLIERAKLLQHEDEEL  103 (179)
Q Consensus        29 ~~~~~l~~A~~~g---~~~~~~~ll~~~~~~~~~~~~~~~~~~g~t~~L~~A~~~g--~~~~v~~ll~~~~~~~~~~~~~  103 (179)
                      ...++||.|+..|   +.++++.|++      .++.++.+|..|+| |||+|+..+  +.+++++|++.|+....     
T Consensus        40 ~G~TaLh~A~~~~~~~~~eivklLLs------~GAdin~kD~~G~T-PLh~Aa~~~~~~~eIv~~Ll~~~~~~~~-----  107 (672)
T PHA02730         40 RGNNALHCYVSNKCDTDIKIVRLLLS------RGVERLCRNNEGLT-PLGVYSKRKYVKSQIVHLLISSYSNASN-----  107 (672)
T ss_pred             CCCcHHHHHHHcCCcCcHHHHHHHHh------CCCCCcccCCCCCC-hHHHHHHcCCCcHHHHHHHHhcCCCCCc-----
Confidence            4569999999997   5899999998      88899999999999 999999976  79999999999765422     


Q ss_pred             hhHHHHhccCCCCcHHHHHHH--cCCHHHHHHHHh-cCCCCCCCCC----CCCCCHHHHHHHhcCCHHHHHHHHhcCCCC
Q 042183          104 ESGMIRMMNKEKHTALHEAVF--HKIVDVVKILTR-EDLDYPYSAN----NYNKTPLCMVAEYEHSSHMVVAILKNCTSV  176 (179)
Q Consensus       104 ~~~~~~~~~~~g~t~l~~A~~--~g~~~~~~~Ll~-~~~~~~~~~~----~~g~tpl~~A~~~~~~~~~~~~Ll~~g~~~  176 (179)
                           +..+..+.+||+.++.  .++.+++++|+. .+.+++...+    ..|.+|+++|.. .++.+++++|+++|+++
T Consensus       108 -----~~~~~~~d~~l~~y~~s~n~~~~~vk~Li~~~~~~~~~~~~~~~~~~~~~~~yl~~~-~~~~eIvklLi~~g~~v  181 (672)
T PHA02730        108 -----ELTSNINDFDLYSYMSSDNIDLRLLKYLIVDKRIRPSKNTNYYIHCLGLVDIYVTTP-NPRPEVLLWLLKSECYS  181 (672)
T ss_pred             -----ccccccCCchHHHHHHhcCCcHHHHHHHHHhcCCChhhhhhhhccccchhhhhHhcC-CCchHHHHHHHHcCCcc
Confidence                 1155568899999888  899999999997 5566542211    378999999999 99999999999999988


Q ss_pred             C
Q 042183          177 S  177 (179)
Q Consensus       177 ~  177 (179)
                      +
T Consensus       182 ~  182 (672)
T PHA02730        182 T  182 (672)
T ss_pred             c
Confidence            4

>PHA02736 Viral ankyrin protein; Provisional

Probab=99.74  E-value=1.7e-17  Score=111.87  Aligned_cols=108  Identities=11%  Similarity=0.166  Sum_probs=83.4

Q ss_pred             cccccCCCCCcHHHHHHHHcCCHHHHHHHHHhhcccCCchhhhhhHHHHhccCCCCcHHHHHHHcCCH---HHHHHHHhc
Q 042183           61 LLLQVNAKGDSRSLLVAAKFGHCDIVSVLIERAKLLQHEDEELESGMIRMMNKEKHTALHEAVFHKIV---DVVKILTRE  137 (179)
Q Consensus        61 ~~~~~~~~g~t~~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~~~~~~~~~~~~g~t~l~~A~~~g~~---~~~~~Ll~~  137 (179)
                      ..+.+|..|.| |||+|++.|+.  +.++...+.....     ....+..+|..|+||||+|+..|+.   +++++|++.
T Consensus         9 ~~~~~d~~g~t-pLh~A~~~g~~--~~l~~~~~~~~~~-----~~~~~~~~d~~g~t~Lh~a~~~~~~~~~e~v~~Ll~~   80 (154)
T PHA02736          9 FASEPDIEGEN-ILHYLCRNGGV--TDLLAFKNAISDE-----NRYLVLEYNRHGKQCVHIVSNPDKADPQEKLKLLMEW   80 (154)
T ss_pred             HHHhcCCCCCC-HHHHHHHhCCH--HHHHHHHHHhcch-----hHHHHHHhcCCCCEEEEeecccCchhHHHHHHHHHHc
Confidence            34567889999 99999999983  3444333322111     1123445788999999999999987   468899999


Q ss_pred             CCCCCCCCC-CCCCCHHHHHHHhcCCHHHHHHHHhc-CCCCCC
Q 042183          138 DLDYPYSAN-NYNKTPLCMVAEYEHSSHMVVAILKN-CTSVSH  178 (179)
Q Consensus       138 ~~~~~~~~~-~~g~tpl~~A~~~~~~~~~~~~Ll~~-g~~~~~  178 (179)
                      |++++ .++ ..|.||||+|+. .++.+++++|+.+ |++++.
T Consensus        81 gadin-~~~~~~g~T~Lh~A~~-~~~~~i~~~Ll~~~g~d~n~  121 (154)
T PHA02736         81 GADIN-GKERVFGNTPLHIAVY-TQNYELATWLCNQPGVNMEI  121 (154)
T ss_pred             CCCcc-ccCCCCCCcHHHHHHH-hCCHHHHHHHHhCCCCCCcc
Confidence            99987 676 589999999999 9999999999984 788753

>TIGR00870 trp transient-receptor-potential calcium channel protein

Probab=99.74  E-value=6e-17  Score=133.61  Aligned_cols=142  Identities=18%  Similarity=0.153  Sum_probs=110.4

Q ss_pred             cCCHHHHHHHHcCChHHHHHHHHHHHHhhCcccccccCCCCCcHHHH-HHHHcCCHHHHHHHHHhhcccCCchhh-----
Q 042183           29 QIDPNLFKAAAAGNLEPFKDMAREEILEICPSLLLQVNAKGDSRSLL-VAAKFGHCDIVSVLIERAKLLQHEDEE-----  102 (179)
Q Consensus        29 ~~~~~l~~A~~~g~~~~~~~ll~~~~~~~~~~~~~~~~~~g~t~~L~-~A~~~g~~~~v~~ll~~~~~~~~~~~~-----  102 (179)
                      ..+..|+.|++.|+.+.++.++++    ..+..++..|..|.| ||| .|+.+++.++++.|++++.. +...+.     
T Consensus        16 ~~~~~~l~A~~~g~~~~v~~lL~~----~~~~~in~~d~~G~t-~Lh~~A~~~~~~eiv~lLl~~g~~-~~~G~T~Lh~A   89 (743)
T TIGR00870        16 DEEKAFLPAAERGDLASVYRDLEE----PKKLNINCPDRLGRS-ALFVAAIENENLELTELLLNLSCR-GAVGDTLLHAI   89 (743)
T ss_pred             HHHHHHHHHHHcCCHHHHHHHhcc----ccccCCCCcCccchh-HHHHHHHhcChHHHHHHHHhCCCC-CCcChHHHHHH
Confidence            345789999999999999999871    015677888999999 999 88889999999999999851 111111     


Q ss_pred             -h---------hhH------------HHHh----ccCCCCcHHHHHHHcCCHHHHHHHHhcCCCCCCCCC----------
Q 042183          103 -L---------ESG------------MIRM----MNKEKHTALHEAVFHKIVDVVKILTREDLDYPYSAN----------  146 (179)
Q Consensus       103 -~---------~~~------------~~~~----~~~~g~t~l~~A~~~g~~~~~~~Ll~~~~~~~~~~~----------  146 (179)
                       .         ...            ..+.    ....|.||||+|+..|+.+++++|+++|++++ .++          
T Consensus        90 ~~~~~~~v~~ll~~l~~~~~~~~~~~~~~~~~~~~~~~G~TpLhlAa~~~~~eiVklLL~~GAdv~-~~~~~~~~~~~~~  168 (743)
T TIGR00870        90 SLEYVDAVEAILLHLLAAFRKSGPLELANDQYTSEFTPGITALHLAAHRQNYEIVKLLLERGASVP-ARACGDFFVKSQG  168 (743)
T ss_pred             HhccHHHHHHHHHHHhhcccccCchhhhccccccccCCCCcHHHHHHHhCCHHHHHHHHhCCCCCC-cCcCCchhhcCCC
Confidence             0         000            0000    12359999999999999999999999999976 332          


Q ss_pred             ----CCCCCHHHHHHHhcCCHHHHHHHHhcCCCCCC
Q 042183          147 ----NYNKTPLCMVAEYEHSSHMVVAILKNCTSVSH  178 (179)
Q Consensus       147 ----~~g~tpl~~A~~~~~~~~~~~~Ll~~g~~~~~  178 (179)
                          ..|.|||+.|+. .|+.+++++|+++|+|++.
T Consensus       169 ~~~~~~g~tpL~~Aa~-~~~~~iv~lLl~~gadin~  203 (743)
T TIGR00870       169 VDSFYHGESPLNAAAC-LGSPSIVALLSEDPADILT  203 (743)
T ss_pred             CCcccccccHHHHHHH-hCCHHHHHHHhcCCcchhh
Confidence                258999999999 9999999999999988764

after chronic exposure to capsaicin. (McCleskey and Gold, 1999).

>PHA02792 ankyrin-like protein; Provisional

Probab=99.72  E-value=1.3e-16  Score=126.18  Aligned_cols=127  Identities=10%  Similarity=0.105  Sum_probs=107.4

Q ss_pred             CHHHHHHHHcCChHHHHHHHHHHHHhhCcccccccCCCC--CcHHHHHHHHcCCH---HHHHHHHHhhcccCCchhhhhh
Q 042183           31 DPNLFKAAAAGNLEPFKDMAREEILEICPSLLLQVNAKG--DSRSLLVAAKFGHC---DIVSVLIERAKLLQHEDEELES  105 (179)
Q Consensus        31 ~~~l~~A~~~g~~~~~~~ll~~~~~~~~~~~~~~~~~~g--~t~~L~~A~~~g~~---~~v~~ll~~~~~~~~~~~~~~~  105 (179)
                      ...++.|+..|+.+.++.|++      .+..++.+|..|  .| |||+|+.....   +++++++++|++++.       
T Consensus       340 ~n~~~~Aa~~gn~eIVelLIs------~GADIN~kD~~g~~~T-pLh~A~~n~~~~v~~IlklLIs~GADIN~-------  405 (631)
T PHA02792        340 INKYFQKFDNRDPKVVEYILK------NGNVVVEDDDNIINIM-PLFPTLSIHESDVLSILKLCKPYIDDINK-------  405 (631)
T ss_pred             chHHHHHHHcCCHHHHHHHHH------cCCchhhhcCCCCChh-HHHHHHHhccHhHHHHHHHHHhcCCcccc-------
Confidence            345899999999999999998      777888888775  57 99998776654   468899999998877       


Q ss_pred             HHHHhccCCCCcHHHHHHHcCCHHHHHHHHhcCCCCCCCCCCCCCCHHHHHHH--hcC-------CHHHHHHHHhcCCCC
Q 042183          106 GMIRMMNKEKHTALHEAVFHKIVDVVKILTREDLDYPYSANNYNKTPLCMVAE--YEH-------SSHMVVAILKNCTSV  176 (179)
Q Consensus       106 ~~~~~~~~~g~t~l~~A~~~g~~~~~~~Ll~~~~~~~~~~~~~g~tpl~~A~~--~~~-------~~~~~~~Ll~~g~~~  176 (179)
                           +|..|+||||+|+..++.+++++|+++|++++ .++..|.|||++|+.  ..+       ..++++.|+.+|.++
T Consensus       406 -----kD~~G~TPLh~Aa~~~n~eivelLLs~GADIN-~kD~~G~TpL~~A~~~~~~~~~~i~~~~~~il~lLLs~~p~i  479 (631)
T PHA02792        406 -----IDKHGRSILYYCIESHSVSLVEWLIDNGADIN-ITTKYGSTCIGICVILAHACIPEIAELYIKILEIILSKLPTI  479 (631)
T ss_pred             -----ccccCcchHHHHHHcCCHHHHHHHHHCCCCCC-CcCCCCCCHHHHHHHHHhcccHHHHHHHHHHHHHHHhcCCCh
Confidence                 99999999999999999999999999999987 899999999999964  122       245689999998765


Q ss_pred             C
Q 042183          177 S  177 (179)
Q Consensus       177 ~  177 (179)
                      +
T Consensus       480 ~  480 (631)
T PHA02792        480 E  480 (631)
T ss_pred             h
Confidence            3

>PLN03192 Voltage-dependent potassium channel; Provisional

Probab=99.71  E-value=1.5e-16  Score=132.34  Aligned_cols=130  Identities=18%  Similarity=0.152  Sum_probs=102.8

Q ss_pred             ccccCCHHHHHHHHcCChHHHHHHHHHHHHhhCcccccccCCCCCcHHHHHHHHcCCHHHHHHHHHhhcccCCchhh---
Q 042183           26 SQLQIDPNLFKAAAAGNLEPFKDMAREEILEICPSLLLQVNAKGDSRSLLVAAKFGHCDIVSVLIERAKLLQHEDEE---  102 (179)
Q Consensus        26 ~~~~~~~~l~~A~~~g~~~~~~~ll~~~~~~~~~~~~~~~~~~g~t~~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~---  102 (179)
                      ......+|||.|+..|+.++++.|++      .+.+++.+|.+|.| |||+|+..|+.+++++|+..++..+.....   
T Consensus       554 ~d~~G~TpLh~Aa~~g~~~~v~~Ll~------~gadin~~d~~G~T-pL~~A~~~g~~~iv~~L~~~~~~~~~~~~~~~L  626 (823)
T PLN03192        554 GDSKGRTPLHIAASKGYEDCVLVLLK------HACNVHIRDANGNT-ALWNAISAKHHKIFRILYHFASISDPHAAGDLL  626 (823)
T ss_pred             CCCCCCCHHHHHHHcChHHHHHHHHh------cCCCCCCcCCCCCC-HHHHHHHhCCHHHHHHHHhcCcccCcccCchHH
Confidence            34446799999999999999999987      67788999999999 999888888888887777655433321100   


Q ss_pred             ----------------hhhHHHHhccCCCCcHHHHHHHcCCHHHHHHHHhcCCCCCCCCCCCC-CCHHHHHHHhcCCHH
Q 042183          103 ----------------LESGMIRMMNKEKHTALHEAVFHKIVDVVKILTREDLDYPYSANNYN-KTPLCMVAEYEHSSH  164 (179)
Q Consensus       103 ----------------~~~~~~~~~~~~g~t~l~~A~~~g~~~~~~~Ll~~~~~~~~~~~~~g-~tpl~~A~~~~~~~~  164 (179)
                                      ..+..++.+|.+|+||||+|+..|+.+++++|+++|++++ ..|..| .+|+.++.. ....+
T Consensus       627 ~~Aa~~g~~~~v~~Ll~~Gadin~~d~~G~TpLh~A~~~g~~~iv~~Ll~~GAdv~-~~~~~g~~t~~~l~~~-~~~~~  703 (823)
T PLN03192        627 CTAAKRNDLTAMKELLKQGLNVDSEDHQGATALQVAMAEDHVDMVRLLIMNGADVD-KANTDDDFSPTELREL-LQKRE  703 (823)
T ss_pred             HHHHHhCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHCCcHHHHHHHHHcCCCCC-CCCCCCCCCHHHHHHH-HHHhh
Confidence                            2233456689999999999999999999999999999987 778888 899988876 44333

>KOG0507 consensus CASK-interacting adaptor protein (caskin) and related proteins with ankyrin repeats and SAM domain [Signal transduction mechanisms]

Probab=99.71  E-value=1.4e-17  Score=131.02  Aligned_cols=120  Identities=28%  Similarity=0.277  Sum_probs=88.3

Q ss_pred             HHHHHHHHcCChHHHHHHHHHHHHhhCcccccccCCCCCcHHHHHHHHcCCHHHHHHHHHhhcccCCchhhhhhHHHHhc
Q 042183           32 PNLFKAAAAGNLEPFKDMAREEILEICPSLLLQVNAKGDSRSLLVAAKFGHCDIVSVLIERAKLLQHEDEELESGMIRMM  111 (179)
Q Consensus        32 ~~l~~A~~~g~~~~~~~ll~~~~~~~~~~~~~~~~~~g~t~~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~~~~~~~~~  111 (179)
                      +.||.|+.+|+.++.+.|++      +...+...+..|.+ |||+|+-.|+.++++.++..+...+.            .
T Consensus        51 Talhha~Lng~~~is~llle------~ea~ldl~d~kg~~-plhlaaw~g~~e~vkmll~q~d~~na------------~  111 (854)
T KOG0507|consen   51 TLLHHAVLNGQNQISKLLLD------YEALLDLCDTKGIL-PLHLAAWNGNLEIVKMLLLQTDILNA------------V  111 (854)
T ss_pred             hHHHHHHhcCchHHHHHHhc------chhhhhhhhccCcc-eEEehhhcCcchHHHHHHhcccCCCc------------c
Confidence            56777777777777777766      45556666677777 77777777777777777777755554            7


Q ss_pred             cCCCCcHHHHHHHcCCHHHHHHHHhcCCCCCCCCCCCCCCHHHHHHHhcCCHHHHHHHHhc
Q 042183          112 NKEKHTALHEAVFHKIVDVVKILTREDLDYPYSANNYNKTPLCMVAEYEHSSHMVVAILKN  172 (179)
Q Consensus       112 ~~~g~t~l~~A~~~g~~~~~~~Ll~~~~~~~~~~~~~g~tpl~~A~~~~~~~~~~~~Ll~~  172 (179)
                      +..|.||||.|+++||.+++.+|+.+|++.. .+|..+.|++.+|++ -|..++++.|++.
T Consensus       112 ~~e~~tplhlaaqhgh~dvv~~Ll~~~adp~-i~nns~~t~ldlA~q-fgr~~Vvq~ll~~  170 (854)
T KOG0507|consen  112 NIENETPLHLAAQHGHLEVVFYLLKKNADPF-IRNNSKETVLDLASR-FGRAEVVQMLLQK  170 (854)
T ss_pred             cccCcCccchhhhhcchHHHHHHHhcCCCcc-ccCcccccHHHHHHH-hhhhHHHHHHhhh
Confidence            7777777777777777777777777777754 777777777777777 7777777777766

>KOG0514 consensus Ankyrin repeat protein [General function prediction only]

Probab=99.70  E-value=1.2e-17  Score=121.87  Aligned_cols=110  Identities=24%  Similarity=0.279  Sum_probs=91.7

Q ss_pred             cccccCCCCCcHHHHHHHHcCCHHHHHHHHHhhcccCCchhh--------------------------hhhHHHHhc-cC
Q 042183           61 LLLQVNAKGDSRSLLVAAKFGHCDIVSVLIERAKLLQHEDEE--------------------------LESGMIRMM-NK  113 (179)
Q Consensus        61 ~~~~~~~~g~t~~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~--------------------------~~~~~~~~~-~~  113 (179)
                      .+|..|.+|.| +|||++.+++.++|+.||+.|.-.-.++.+                          .....+|++ .+
T Consensus       260 vVNlaDsNGNT-ALHYsVSHaNF~VV~~LLDSgvC~VD~qNrAGYtpiMLaALA~lk~~~d~~vV~~LF~mgnVNaKAsQ  338 (452)
T KOG0514|consen  260 VVNLADSNGNT-ALHYAVSHANFDVVSILLDSGVCDVDQQNRAGYTPVMLAALAKLKQPADRTVVERLFKMGDVNAKASQ  338 (452)
T ss_pred             HhhhhcCCCCe-eeeeeecccchHHHHHHhccCcccccccccccccHHHHHHHHhhcchhhHHHHHHHHhccCcchhhhh
Confidence            46889999999 999999999999999999987433222211                          122233443 35


Q ss_pred             CCCcHHHHHHHcCCHHHHHHHHhcCCCCCCCCCCCCCCHHHHHHHhcCCHHHHHHHHhcC
Q 042183          114 EKHTALHEAVFHKIVDVVKILTREDLDYPYSANNYNKTPLCMVAEYEHSSHMVVAILKNC  173 (179)
Q Consensus       114 ~g~t~l~~A~~~g~~~~~~~Ll~~~~~~~~~~~~~g~tpl~~A~~~~~~~~~~~~Ll~~g  173 (179)
                      -|+|+|++|+.+|+.++++.||..|+|++ ..|.+|.|+|.+||. +||.|++++||...
T Consensus       339 ~gQTALMLAVSHGr~d~vk~LLacgAdVN-iQDdDGSTALMCA~E-HGhkEivklLLA~p  396 (452)
T KOG0514|consen  339 HGQTALMLAVSHGRVDMVKALLACGADVN-IQDDDGSTALMCAAE-HGHKEIVKLLLAVP  396 (452)
T ss_pred             hcchhhhhhhhcCcHHHHHHHHHccCCCc-cccCCccHHHhhhhh-hChHHHHHHHhccC
Confidence            69999999999999999999999999997 999999999999999 99999999999764

>PHA02792 ankyrin-like protein; Provisional

Probab=99.70  E-value=1.2e-16  Score=126.47  Aligned_cols=138  Identities=9%  Similarity=0.021  Sum_probs=113.5

Q ss_pred             ccccCCHHHHH-HHHcCChHHHHHHHHHHHHhhCcccccccCCCCCcHHHHHHHH-cCCHHHHHHHHHhhcccCCchhh-
Q 042183           26 SQLQIDPNLFK-AAAAGNLEPFKDMAREEILEICPSLLLQVNAKGDSRSLLVAAK-FGHCDIVSVLIERAKLLQHEDEE-  102 (179)
Q Consensus        26 ~~~~~~~~l~~-A~~~g~~~~~~~ll~~~~~~~~~~~~~~~~~~g~t~~L~~A~~-~g~~~~v~~ll~~~~~~~~~~~~-  102 (179)
                      .+-....++|+ |+..|++|.++.|++      .+++++..+..|.+ |+|+|+. .++.+++++|+++|+++...... 
T Consensus        67 ~n~~~~~~~~~~~s~n~~lElvk~LI~------~GAdvN~~~n~~~~-~l~ya~~~~~~~eivk~Ll~~Gad~~~~~~~g  139 (631)
T PHA02792         67 KNINDFDIFEYLCSDNIDIELLKLLIS------KGLEINSIKNGINI-VEKYATTSNPNVDVFKLLLDKGIPTCSNIQYG  139 (631)
T ss_pred             CccCCccHHHHHHHhcccHHHHHHHHH------cCCCcccccCCCCc-ceeEeecCCCChHHHHHHHHCCCCcccccccC
Confidence            33333346766 777889999999998      78899999888889 9999966 69999999999999874331110 


Q ss_pred             -----------------------hhhHHHHhccCCCCcHHHHHHHcC-------CHHHHHHHHhcCCCCCCCCCCCCCCH
Q 042183          103 -----------------------LESGMIRMMNKEKHTALHEAVFHK-------IVDVVKILTREDLDYPYSANNYNKTP  152 (179)
Q Consensus       103 -----------------------~~~~~~~~~~~~g~t~l~~A~~~g-------~~~~~~~Ll~~~~~~~~~~~~~g~tp  152 (179)
                                             .-+..++..+..|.||||+|+..+       +.+++++|+.+|++++ ..|..|.||
T Consensus       140 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~g~t~L~~~i~~~s~~~~~~~~~v~k~Li~~g~~~~-~~d~~g~t~  218 (631)
T PHA02792        140 YKIIIEQITRAEYYNWDDELDDYDYDYTTDYDDRMGKTVLYYYIITRSQDGYATSLDVINYLISHEKEMR-YYTYREHTT  218 (631)
T ss_pred             cchhhhhcccccccchhhhccccccccccccCCCCCCchHHHHHhhCCcccccCCHHHHHHHHhCCCCcC-ccCCCCChH
Confidence                                   112245678889999999999999       8999999999999987 789999999


Q ss_pred             HHHHHHhcC--CHHHHHHHHhc
Q 042183          153 LCMVAEYEH--SSHMVVAILKN  172 (179)
Q Consensus       153 l~~A~~~~~--~~~~~~~Ll~~  172 (179)
                      ||+|+. +.  ..|++++|++.
T Consensus       219 l~~~~~-~~~i~~ei~~~L~~~  239 (631)
T PHA02792        219 LYYYVD-KCDIKREIFDALFDS  239 (631)
T ss_pred             HHHHHH-cccchHHHHHHHHhc
Confidence            999999 88  88999999874

>KOG0512 consensus Fetal globin-inducing factor (contains ankyrin repeats) [Transcription]

Probab=99.70  E-value=8.6e-17  Score=106.46  Aligned_cols=93  Identities=20%  Similarity=0.215  Sum_probs=84.7

Q ss_pred             HHHHHHHcCCHHHHHHHHHhhcccCCchhhhhhHHHHhccCCCCcHHHHHHHcCCHHHHHHHHhcCCCCCCCCCCCCCCH
Q 042183           73 SLLVAAKFGHCDIVSVLIERAKLLQHEDEELESGMIRMMNKEKHTALHEAVFHKIVDVVKILTREDLDYPYSANNYNKTP  152 (179)
Q Consensus        73 ~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~~~~~~~~~~~~g~t~l~~A~~~g~~~~~~~Ll~~~~~~~~~~~~~g~tp  152 (179)
                      .+.+|+..+...-|+.||+..++           .++.+|.+|.||||.|+..||.+|++.|+..|++.. .+...||||
T Consensus        66 l~lwaae~nrl~eV~~lL~e~an-----------~vNtrD~D~YTpLHRAaYn~h~div~~ll~~gAn~~-a~T~~GWTP  133 (228)
T KOG0512|consen   66 LLLWAAEKNRLTEVQRLLSEKAN-----------HVNTRDEDEYTPLHRAAYNGHLDIVHELLLSGANKE-AKTNEGWTP  133 (228)
T ss_pred             HHHHHHhhccHHHHHHHHHhccc-----------cccccccccccHHHHHHhcCchHHHHHHHHccCCcc-cccccCccc
Confidence            46789999999999999987653           345699999999999999999999999999999976 899999999


Q ss_pred             HHHHHHhcCCHHHHHHHHhcCCCCCC
Q 042183          153 LCMVAEYEHSSHMVVAILKNCTSVSH  178 (179)
Q Consensus       153 l~~A~~~~~~~~~~~~Ll~~g~~~~~  178 (179)
                      ||.||. -.+.+|+-+|+++|+|++.
T Consensus       134 LhSAck-WnN~~va~~LLqhgaDVnA  158 (228)
T KOG0512|consen  134 LHSACK-WNNFEVAGRLLQHGADVNA  158 (228)
T ss_pred             hhhhhc-ccchhHHHHHHhccCcccc
Confidence            999999 9999999999999999874

>COG0666 Arp FOG: Ankyrin repeat [General function prediction only]

Probab=99.68  E-value=1.2e-15  Score=108.16  Aligned_cols=123  Identities=24%  Similarity=0.268  Sum_probs=112.1

Q ss_pred             CCHHHHHHHHcCChHHHHHHHHHHHHhhCcccccccCCCCCcHHHHHHHHcCC-----HHHHHHHHHhhc---ccCCchh
Q 042183           30 IDPNLFKAAAAGNLEPFKDMAREEILEICPSLLLQVNAKGDSRSLLVAAKFGH-----CDIVSVLIERAK---LLQHEDE  101 (179)
Q Consensus        30 ~~~~l~~A~~~g~~~~~~~ll~~~~~~~~~~~~~~~~~~g~t~~L~~A~~~g~-----~~~v~~ll~~~~---~~~~~~~  101 (179)
                      ...+++.++..++.+.+..++.      .+..++.++..|.| |||+|+..++     .+++++|++.|+   ....   
T Consensus        73 ~~~~~~~~~~~~~~~~~~~l~~------~~~~~~~~~~~g~t-~l~~a~~~~~~~~~~~~~~~~ll~~g~~~~~~~~---  142 (235)
T COG0666          73 GRLPLHSAASKGDDKIVKLLLA------SGADVNAKDADGDT-PLHLAALNGNPPEGNIEVAKLLLEAGADLDVNNL---  142 (235)
T ss_pred             ccCHHHHHHHcCcHHHHHHHHH------cCCCcccccCCCCc-HHHHHHhcCCcccchHHHHHHHHHcCCCCCCccc---
Confidence            4577999999999999988876      66677899999999 9999999999     999999999999   4444   


Q ss_pred             hhhhHHHHhccCCCCcHHHHHHHcCCHHHHHHHHhcCCCCCCCCCCCCCCHHHHHHHhcCCHHHHHHHHhcC
Q 042183          102 ELESGMIRMMNKEKHTALHEAVFHKIVDVVKILTREDLDYPYSANNYNKTPLCMVAEYEHSSHMVVAILKNC  173 (179)
Q Consensus       102 ~~~~~~~~~~~~~g~t~l~~A~~~g~~~~~~~Ll~~~~~~~~~~~~~g~tpl~~A~~~~~~~~~~~~Ll~~g  173 (179)
                               ++..|+||||+|+..|+.++++.|++.|+++. ..+..|.|++++|+. .++.++++.+++.+
T Consensus       143 ---------~~~~g~tpl~~A~~~~~~~~~~~ll~~~~~~~-~~~~~g~t~l~~a~~-~~~~~~~~~l~~~~  203 (235)
T COG0666         143 ---------RDEDGNTPLHWAALNGDADIVELLLEAGADPN-SRNSYGVTALDPAAK-NGRIELVKLLLDKG  203 (235)
T ss_pred             ---------cCCCCCchhHHHHHcCchHHHHHHHhcCCCCc-ccccCCCcchhhhcc-cchHHHHHHHHhcC
Confidence                     69999999999999999999999999999976 789999999999999 99999999999864

>KOG0515 consensus p53-interacting protein 53BP/ASPP, contains ankyrin and SH3 domains [Cell cycle control, cell division, chromosome partitioning]

Probab=99.68  E-value=1.6e-16  Score=120.96  Aligned_cols=119  Identities=24%  Similarity=0.154  Sum_probs=101.8

Q ss_pred             HHHHHHcCChHHHHHHHHHHHHhhCcccccccCCCCCcHHHHHHHHcCCHHHHHHHHHhhcccCCchhhhhhHHHHhccC
Q 042183           34 LFKAAAAGNLEPFKDMAREEILEICPSLLLQVNAKGDSRSLLVAAKFGHCDIVSVLIERAKLLQHEDEELESGMIRMMNK  113 (179)
Q Consensus        34 l~~A~~~g~~~~~~~ll~~~~~~~~~~~~~~~~~~g~t~~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~~~~~~~~~~~  113 (179)
                      |..|+..|.+|.|+..+.      .-.+....|..|.| +||-|+..||.+||+||++.|++++.            .|.
T Consensus       554 LLDaaLeGEldlVq~~i~------ev~DpSqpNdEGIT-aLHNAiCaghyeIVkFLi~~ganVNa------------~DS  614 (752)
T KOG0515|consen  554 LLDAALEGELDLVQRIIY------EVTDPSQPNDEGIT-ALHNAICAGHYEIVKFLIEFGANVNA------------ADS  614 (752)
T ss_pred             HHhhhhcchHHHHHHHHH------hhcCCCCCCccchh-HHhhhhhcchhHHHHHHHhcCCcccC------------ccC
Confidence            788999999999999887      23355678889999 99999999999999999999999988            999


Q ss_pred             CCCcHHHHHHHcCCHHHHHHHHhcCCCCCCCCCCCCCCHHHHHHHh-cCCHHHHHHHHh
Q 042183          114 EKHTALHEAVFHKIVDVVKILTREDLDYPYSANNYNKTPLCMVAEY-EHSSHMVVAILK  171 (179)
Q Consensus       114 ~g~t~l~~A~~~g~~~~~~~Ll~~~~~~~~~~~~~g~tpl~~A~~~-~~~~~~~~~Ll~  171 (179)
                      +||||||+|+.-+++.+++.|++.|+.+--..=.++.|+...+-.+ -|..+|.+||..
T Consensus       615 dGWTPLHCAASCNnv~~ckqLVe~GaavfAsTlSDmeTa~eKCee~eeGY~~CsqyL~~  673 (752)
T KOG0515|consen  615 DGWTPLHCAASCNNVPMCKQLVESGAAVFASTLSDMETAAEKCEEMEEGYDQCSQYLYG  673 (752)
T ss_pred             CCCchhhhhhhcCchHHHHHHHhccceEEeeecccccchhhhcchhhhhHHHHHHHHHH
Confidence            9999999999999999999999999886423445678887776431 677889999864

>cd00204 ANK ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins

Probab=99.67  E-value=1.8e-15  Score=97.59  Aligned_cols=97  Identities=26%  Similarity=0.393  Sum_probs=88.4

Q ss_pred             cCCCCCcHHHHHHHHcCCHHHHHHHHHhhcccCCchhhhhhHHHHhccCCCCcHHHHHHHcCCHHHHHHHHhcCCCCCCC
Q 042183           65 VNAKGDSRSLLVAAKFGHCDIVSVLIERAKLLQHEDEELESGMIRMMNKEKHTALHEAVFHKIVDVVKILTREDLDYPYS  144 (179)
Q Consensus        65 ~~~~g~t~~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~~~~~~~~~~~~g~t~l~~A~~~g~~~~~~~Ll~~~~~~~~~  144 (179)
                      +|.+|.| |||+|+..++.+++++|+..+...+.            .+..|.||+|.|+..+..+++++|++.++... .
T Consensus         3 ~~~~g~t-~l~~a~~~~~~~~i~~li~~~~~~~~------------~~~~g~~~l~~a~~~~~~~~~~~ll~~~~~~~-~   68 (126)
T cd00204           3 RDEDGRT-PLHLAASNGHLEVVKLLLENGADVNA------------KDNDGRTPLHLAAKNGHLEIVKLLLEKGADVN-A   68 (126)
T ss_pred             cCcCCCC-HHHHHHHcCcHHHHHHHHHcCCCCCc------------cCCCCCcHHHHHHHcCCHHHHHHHHHcCCCcc-c
Confidence            5678999 99999999999999999999987655            88899999999999999999999999998765 7


Q ss_pred             CCCCCCCHHHHHHHhcCCHHHHHHHHhcCCCC
Q 042183          145 ANNYNKTPLCMVAEYEHSSHMVVAILKNCTSV  176 (179)
Q Consensus       145 ~~~~g~tpl~~A~~~~~~~~~~~~Ll~~g~~~  176 (179)
                      .+..|.||+|+|+. .++.+++++|+++|.++
T Consensus        69 ~~~~~~~~l~~a~~-~~~~~~~~~L~~~~~~~   99 (126)
T cd00204          69 RDKDGNTPLHLAAR-NGNLDVVKLLLKHGADV   99 (126)
T ss_pred             cCCCCCCHHHHHHH-cCcHHHHHHHHHcCCCC
Confidence            78899999999999 99999999999988544

The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other types of domains. The structural repeat unit contains two antiparallel helices and a beta-hairpin, repeats are stacked in a superhelical arrangement; this alignment contains 4 consecutive repeats.

>KOG0507 consensus CASK-interacting adaptor protein (caskin) and related proteins with ankyrin repeats and SAM domain [Signal transduction mechanisms]

Probab=99.67  E-value=1.3e-16  Score=125.61  Aligned_cols=106  Identities=22%  Similarity=0.192  Sum_probs=95.6

Q ss_pred             CcccccccCCCCCcHHHHHHHHcCCHHHHHHHHHhhcccCCchhhhhhHHHHhccCCCCcHHHHHHHcCCHHHHHHHHhc
Q 042183           58 CPSLLLQVNAKGDSRSLLVAAKFGHCDIVSVLIERAKLLQHEDEELESGMIRMMNKEKHTALHEAVFHKIVDVVKILTRE  137 (179)
Q Consensus        58 ~~~~~~~~~~~g~t~~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~~~~~~~~~~~~g~t~l~~A~~~g~~~~~~~Ll~~  137 (179)
                      .+..++..|..|.| +||.||.+|+.+++++|+++.+....            .+..|.+|||+|++.|+.++++.|+.+
T Consensus        38 rsds~n~qd~~gfT-alhha~Lng~~~is~llle~ea~ldl------------~d~kg~~plhlaaw~g~~e~vkmll~q  104 (854)
T KOG0507|consen   38 RSDSHNLQDYSGFT-LLHHAVLNGQNQISKLLLDYEALLDL------------CDTKGILPLHLAAWNGNLEIVKMLLLQ  104 (854)
T ss_pred             CCccccccCccchh-HHHHHHhcCchHHHHHHhcchhhhhh------------hhccCcceEEehhhcCcchHHHHHHhc
Confidence            45667888999999 99999999999999999999775544            888899999999999999999999999


Q ss_pred             CCCCCCCCCCCCCCHHHHHHHhcCCHHHHHHHHhcCCCCCC
Q 042183          138 DLDYPYSANNYNKTPLCMVAEYEHSSHMVVAILKNCTSVSH  178 (179)
Q Consensus       138 ~~~~~~~~~~~g~tpl~~A~~~~~~~~~~~~Ll~~g~~~~~  178 (179)
                      +...+ ..+..|.||||.|+. +||.+++.+|+++|+|+.-
T Consensus       105 ~d~~n-a~~~e~~tplhlaaq-hgh~dvv~~Ll~~~adp~i  143 (854)
T KOG0507|consen  105 TDILN-AVNIENETPLHLAAQ-HGHLEVVFYLLKKNADPFI  143 (854)
T ss_pred             ccCCC-cccccCcCccchhhh-hcchHHHHHHHhcCCCccc
Confidence            85554 889999999999999 9999999999999998743

>TIGR00870 trp transient-receptor-potential calcium channel protein

Probab=99.67  E-value=2.9e-16  Score=129.62  Aligned_cols=124  Identities=22%  Similarity=0.095  Sum_probs=103.2

Q ss_pred             cCCHHHHHHHHcCChHHHHHHHHHHHHhhCccccccc--------------CCCCCcHHHHHHHHcCCHHHHHHHHHhhc
Q 042183           29 QIDPNLFKAAAAGNLEPFKDMAREEILEICPSLLLQV--------------NAKGDSRSLLVAAKFGHCDIVSVLIERAK   94 (179)
Q Consensus        29 ~~~~~l~~A~~~g~~~~~~~ll~~~~~~~~~~~~~~~--------------~~~g~t~~L~~A~~~g~~~~v~~ll~~~~   94 (179)
                      ...+|||.|+..|+.++++.|++      .+..++.+              ...|.+ |||.|+..|+.+++++|+++|+
T Consensus       127 ~G~TpLhlAa~~~~~eiVklLL~------~GAdv~~~~~~~~~~~~~~~~~~~~g~t-pL~~Aa~~~~~~iv~lLl~~ga  199 (743)
T TIGR00870       127 PGITALHLAAHRQNYEIVKLLLE------RGASVPARACGDFFVKSQGVDSFYHGES-PLNAAACLGSPSIVALLSEDPA  199 (743)
T ss_pred             CCCcHHHHHHHhCCHHHHHHHHh------CCCCCCcCcCCchhhcCCCCCccccccc-HHHHHHHhCCHHHHHHHhcCCc
Confidence            35699999999999999999998      45555533              236899 9999999999999999999998


Q ss_pred             ccCCchhhhhhHHHHhccCCCCcHHHHHHHcC---------CHHHHHHHHhcCCCCC------CCCCCCCCCHHHHHHHh
Q 042183           95 LLQHEDEELESGMIRMMNKEKHTALHEAVFHK---------IVDVVKILTREDLDYP------YSANNYNKTPLCMVAEY  159 (179)
Q Consensus        95 ~~~~~~~~~~~~~~~~~~~~g~t~l~~A~~~g---------~~~~~~~Ll~~~~~~~------~~~~~~g~tpl~~A~~~  159 (179)
                      +++.            +|..|+||||+|+..+         ...+.++++..++...      ...|..|.|||++|+. 
T Consensus       200 din~------------~d~~g~T~Lh~A~~~~~~~~~~~~l~~~~~~~l~~ll~~~~~~~el~~i~N~~g~TPL~~A~~-  266 (743)
T TIGR00870       200 DILT------------ADSLGNTLLHLLVMENEFKAEYEELSCQMYNFALSLLDKLRDSKELEVILNHQGLTPLKLAAK-  266 (743)
T ss_pred             chhh------------HhhhhhHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHhccCChHhhhhhcCCCCCCchhhhhh-
Confidence            7766            8999999999999987         2346677776654431      2578899999999999 


Q ss_pred             cCCHHHHHHHHhc
Q 042183          160 EHSSHMVVAILKN  172 (179)
Q Consensus       160 ~~~~~~~~~Ll~~  172 (179)
                      .|+.+++++|++.
T Consensus       267 ~g~~~l~~lLL~~  279 (743)
T TIGR00870       267 EGRIVLFRLKLAI  279 (743)
T ss_pred             cCCccHHHHHHHH
Confidence            9999999999984

after chronic exposure to capsaicin. (McCleskey and Gold, 1999).

>KOG4214 consensus Myotrophin and similar proteins [Transcription]

Probab=99.67  E-value=4.5e-16  Score=92.62  Aligned_cols=90  Identities=20%  Similarity=0.195  Sum_probs=80.9

Q ss_pred             HHHHHHHcCCHHHHHHHHHhhcccCCchhhhhhHHHHhccCCCCcHHHHHHHcCCHHHHHHHHhcCCCCCCCCCCCCCCH
Q 042183           73 SLLVAAKFGHCDIVSVLIERAKLLQHEDEELESGMIRMMNKEKHTALHEAVFHKIVDVVKILTREDLDYPYSANNYNKTP  152 (179)
Q Consensus        73 ~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~~~~~~~~~~~~g~t~l~~A~~~g~~~~~~~Ll~~~~~~~~~~~~~g~tp  152 (179)
                      .+.+++++|..+-|+..+..|-+.+.            .. .|.+|||+|+-+|+.++++||+..|+++. .+|..|-||
T Consensus         5 ~~~W~vkNG~~DeVk~~v~~g~nVn~------------~~-ggR~plhyAAD~GQl~ilefli~iGA~i~-~kDKygITP   70 (117)
T KOG4214|consen    5 SVAWNVKNGEIDEVKQSVNEGLNVNE------------IY-GGRTPLHYAADYGQLSILEFLISIGANIQ-DKDKYGITP   70 (117)
T ss_pred             hHhhhhccCcHHHHHHHHHccccHHH------------Hh-CCcccchHhhhcchHHHHHHHHHhccccC-CccccCCcH
Confidence            57789999999999998888865543            43 78999999999999999999999999987 899999999


Q ss_pred             HHHHHHhcCCHHHHHHHHhcCCCCC
Q 042183          153 LCMVAEYEHSSHMVVAILKNCTSVS  177 (179)
Q Consensus       153 l~~A~~~~~~~~~~~~Ll~~g~~~~  177 (179)
                      |..|++ -||.+|+++|+++|+|-.
T Consensus        71 LLsAvw-EGH~~cVklLL~~GAdrt   94 (117)
T KOG4214|consen   71 LLSAVW-EGHRDCVKLLLQNGADRT   94 (117)
T ss_pred             HHHHHH-HhhHHHHHHHHHcCcccc
Confidence            999999 999999999999998753

>KOG0505 consensus Myosin phosphatase, regulatory subunit [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=99.66  E-value=4.5e-16  Score=118.45  Aligned_cols=127  Identities=19%  Similarity=0.224  Sum_probs=111.8

Q ss_pred             HHHHHHHHcCChHHHHHHHHHHHHhhCcccccccCCCCCcHHHHHHHHcCCHHHHHHHHHhhcccCCchhhhhhHHHHhc
Q 042183           32 PNLFKAAAAGNLEPFKDMAREEILEICPSLLLQVNAKGDSRSLLVAAKFGHCDIVSVLIERAKLLQHEDEELESGMIRMM  111 (179)
Q Consensus        32 ~~l~~A~~~g~~~~~~~ll~~~~~~~~~~~~~~~~~~g~t~~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~~~~~~~~~  111 (179)
                      -.+..|+..|+.+-+..|+.      .+...+..+.+|.| +||.+|...+.+||++|+++|++++.            .
T Consensus        42 a~~l~A~~~~d~~ev~~ll~------~ga~~~~~n~DglT-alhq~~id~~~e~v~~l~e~ga~Vn~------------~  102 (527)
T KOG0505|consen   42 AVFLEACSRGDLEEVRKLLN------RGASPNLCNVDGLT-ALHQACIDDNLEMVKFLVENGANVNA------------Q  102 (527)
T ss_pred             HHHHhccccccHHHHHHHhc------cCCCccccCCccch-hHHHHHhcccHHHHHHHHHhcCCccc------------c
Confidence            44888999999999999987      44566889999999 99999999999999999999998888            9


Q ss_pred             cCCCCcHHHHHHHcCCHHHHHHHHhcCCCCCC------------------------------------------------
Q 042183          112 NKEKHTALHEAVFHKIVDVVKILTREDLDYPY------------------------------------------------  143 (179)
Q Consensus       112 ~~~g~t~l~~A~~~g~~~~~~~Ll~~~~~~~~------------------------------------------------  143 (179)
                      |..||||||.|+.-|+..++++|+..|+++..                                                
T Consensus       103 d~e~wtPlhaaascg~~~i~~~li~~gA~~~avNsdg~~P~dl~e~ea~~~~l~~~~~r~gi~iea~R~~~e~~ml~D~~  182 (527)
T KOG0505|consen  103 DNEGWTPLHAAASCGYLNIVEYLIQHGANLLAVNSDGNMPYDLAEDEATLDVLETEMARQGIDIEAARKAEEQTMLDDAR  182 (527)
T ss_pred             ccccCCcchhhcccccHHHHHHHHHhhhhhhhccCCCCCccccccCcchhHHHHHHHHHhcccHHHHhhhhHHHHHHHHH
Confidence            99999999999999999999999999886430                                                


Q ss_pred             ----------CCCCCCCCHHHHHHHhcCCHHHHHHHHhcCCCCCC
Q 042183          144 ----------SANNYNKTPLCMVAEYEHSSHMVVAILKNCTSVSH  178 (179)
Q Consensus       144 ----------~~~~~g~tpl~~A~~~~~~~~~~~~Ll~~g~~~~~  178 (179)
                                ..+..|-|.||+|+. +|..+++.+|++.|.+++.
T Consensus       183 q~l~~G~~~d~~~~rG~T~lHvAaa-~Gy~e~~~lLl~ag~~~~~  226 (527)
T KOG0505|consen  183 QWLNAGAELDARHARGATALHVAAA-NGYTEVAALLLQAGYSVNI  226 (527)
T ss_pred             HHHhccccccccccccchHHHHHHh-hhHHHHHHHHHHhccCccc
Confidence                      011157899999999 9999999999999988753

>KOG1710 consensus MYND Zn-finger and ankyrin repeat protein [General function prediction only]

Probab=99.65  E-value=2.5e-15  Score=106.93  Aligned_cols=121  Identities=21%  Similarity=0.122  Sum_probs=109.3

Q ss_pred             CCHHHHHHHHcCChHHHHHHHHHHHHhhCcccccccCCCCCcHHHHHHHHcCCHHHHHHHHHhhcccCCchhhhhhHHHH
Q 042183           30 IDPNLFKAAAAGNLEPFKDMAREEILEICPSLLLQVNAKGDSRSLLVAAKFGHCDIVSVLIERAKLLQHEDEELESGMIR  109 (179)
Q Consensus        30 ~~~~l~~A~~~g~~~~~~~ll~~~~~~~~~~~~~~~~~~g~t~~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~~~~~~~  109 (179)
                      ..++|..++..|+.+....|++      ....++.+|..|.+ +|..|+..|+.++++.|++.|+++|.           
T Consensus        12 ~~~~Lle~i~Kndt~~a~~LLs------~vr~vn~~D~sGMs-~LahAaykGnl~~v~lll~~gaDvN~-----------   73 (396)
T KOG1710|consen   12 PKSPLLEAIDKNDTEAALALLS------TVRQVNQRDPSGMS-VLAHAAYKGNLTLVELLLELGADVND-----------   73 (396)
T ss_pred             hhhHHHHHHccCcHHHHHHHHH------HhhhhhccCCCccc-HHHHHHhcCcHHHHHHHHHhCCCcCc-----------
Confidence            5588999999999999999987      34457899999999 99999999999999999999999887           


Q ss_pred             hccCCCCcHHHHHHHcCCHHHHHHHHhcCCCCCCCCCCCCCCHHHHHHHhcCCHHHHHHHH
Q 042183          110 MMNKEKHTALHEAVFHKIVDVVKILTREDLDYPYSANNYNKTPLCMVAEYEHSSHMVVAIL  170 (179)
Q Consensus       110 ~~~~~g~t~l~~A~~~g~~~~~~~Ll~~~~~~~~~~~~~g~tpl~~A~~~~~~~~~~~~Ll  170 (179)
                      .+...+.||||+|+..|+.++.+.|++.|+... ..|.-|+|+-.+|+. -|+.+||..+=
T Consensus        74 ~qhg~~YTpLmFAALSGn~dvcrllldaGa~~~-~vNsvgrTAaqmAAF-VG~H~CV~iIN  132 (396)
T KOG1710|consen   74 KQHGTLYTPLMFAALSGNQDVCRLLLDAGARMY-LVNSVGRTAAQMAAF-VGHHECVAIIN  132 (396)
T ss_pred             ccccccccHHHHHHHcCCchHHHHHHhccCccc-cccchhhhHHHHHHH-hcchHHHHHHh
Confidence            356678999999999999999999999999864 888999999999999 99999987763

>PF13637 Ank_4: Ankyrin repeats (many copies); PDB: 3B95_A 3B7B_A 3F6Q_A 2KBX_A 3IXE_A 2DWZ_C 2DVW_A 3AJI_A 1S70_B 2HE0_A

Probab=99.61  E-value=3.4e-15  Score=82.72  Aligned_cols=54  Identities=26%  Similarity=0.335  Sum_probs=45.8

Q ss_pred             CCcHHHHHHHcCCHHHHHHHHhcCCCCCCCCCCCCCCHHHHHHHhcCCHHHHHHHH
Q 042183          115 KHTALHEAVFHKIVDVVKILTREDLDYPYSANNYNKTPLCMVAEYEHSSHMVVAIL  170 (179)
Q Consensus       115 g~t~l~~A~~~g~~~~~~~Ll~~~~~~~~~~~~~g~tpl~~A~~~~~~~~~~~~Ll  170 (179)
                      |.||||+|+..|+.+++++|++.|.+++ ..|.+|.||||+|+. .|+.+++++|+
T Consensus         1 g~t~lh~A~~~g~~~~~~~Ll~~~~din-~~d~~g~t~lh~A~~-~g~~~~~~~Ll   54 (54)
T PF13637_consen    1 GRTPLHWAARSGNLEIVKLLLEHGADIN-AQDEDGRTPLHYAAK-NGNIDIVKFLL   54 (54)
T ss_dssp             SSBHHHHHHHTT-HHHHHHHHHTTSGTT--B-TTS--HHHHHHH-TT-HHHHHHHH
T ss_pred             CChHHHHHHHhCCHHHHHHHHHCCCCCC-CCCCCCCCHHHHHHH-ccCHHHHHHHC
Confidence            6899999999999999999999999987 779999999999999 99999999986

...

>PTZ00322 6-phosphofructo-2-kinase/fructose-2,6-biphosphatase; Provisional

Probab=99.60  E-value=9.9e-15  Score=118.70  Aligned_cols=86  Identities=22%  Similarity=0.190  Sum_probs=82.3

Q ss_pred             HHHHHHHcCCHHHHHHHHHhhcccCCchhhhhhHHHHhccCCCCcHHHHHHHcCCHHHHHHHHhcCCCCCCCCCCCCCCH
Q 042183           73 SLLVAAKFGHCDIVSVLIERAKLLQHEDEELESGMIRMMNKEKHTALHEAVFHKIVDVVKILTREDLDYPYSANNYNKTP  152 (179)
Q Consensus        73 ~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~~~~~~~~~~~~g~t~l~~A~~~g~~~~~~~Ll~~~~~~~~~~~~~g~tp  152 (179)
                      .|+.|+..|+.+++++|++.|++++.            +|..|+||||+|+..|+.+++++|++.|++++ .+|..|.||
T Consensus        85 ~L~~aa~~G~~~~vk~LL~~Gadin~------------~d~~G~TpLh~Aa~~g~~eiv~~LL~~Gadvn-~~d~~G~Tp  151 (664)
T PTZ00322         85 ELCQLAASGDAVGARILLTGGADPNC------------RDYDGRTPLHIACANGHVQVVRVLLEFGADPT-LLDKDGKTP  151 (664)
T ss_pred             HHHHHHHcCCHHHHHHHHHCCCCCCC------------cCCCCCcHHHHHHHCCCHHHHHHHHHCCCCCC-CCCCCCCCH
Confidence            48899999999999999999998887            99999999999999999999999999999986 899999999


Q ss_pred             HHHHHHhcCCHHHHHHHHhc
Q 042183          153 LCMVAEYEHSSHMVVAILKN  172 (179)
Q Consensus       153 l~~A~~~~~~~~~~~~Ll~~  172 (179)
                      ||+|+. .|+.+++++|+++
T Consensus       152 Lh~A~~-~g~~~iv~~Ll~~  170 (664)
T PTZ00322        152 LELAEE-NGFREVVQLLSRH  170 (664)
T ss_pred             HHHHHH-CCcHHHHHHHHhC
Confidence            999999 9999999999998

>KOG3676 consensus Ca2+-permeable cation channel OSM-9 and related channels (OTRPC family) [Inorganic ion transport and metabolism; Signal transduction mechanisms]

Probab=99.60  E-value=1e-14  Score=115.98  Aligned_cols=129  Identities=19%  Similarity=0.169  Sum_probs=109.1

Q ss_pred             CCHHHHHHHHcCChHHHHHHHHHHHHh---hCccccccc--------------CCCCCcHHHHHHHHcCCHHHHHHHHHh
Q 042183           30 IDPNLFKAAAAGNLEPFKDMAREEILE---ICPSLLLQV--------------NAKGDSRSLLVAAKFGHCDIVSVLIER   92 (179)
Q Consensus        30 ~~~~l~~A~~~g~~~~~~~ll~~~~~~---~~~~~~~~~--------------~~~g~t~~L~~A~~~g~~~~v~~ll~~   92 (179)
                      ..++||.|+.+.+.+.|+.|++.+..-   .++......              -..|+. ||-.||.-++.+++++|+++
T Consensus       184 GqSaLHiAIv~~~~~~V~lLl~~gADV~aRa~G~FF~~~dqk~~rk~T~Y~G~~YfGEy-PLSfAAC~nq~eivrlLl~~  262 (782)
T KOG3676|consen  184 GQSALHIAIVNRDAELVRLLLAAGADVHARACGAFFCPDDQKASRKSTNYTGYFYFGEY-PLSFAACTNQPEIVRLLLAH  262 (782)
T ss_pred             CcchHHHHHHhccHHHHHHHHHcCCchhhHhhccccCcccccccccccCCcceeeeccC-chHHHHHcCCHHHHHHHHhc
Confidence            458999999999999999999821100   011111111              235889 99999999999999999999


Q ss_pred             hcccCCchhhhhhHHHHhccCCCCcHHHHHHHcCCHHHHHHHHhcCCC--CCCCCCCCCCCHHHHHHHhcCCHHHHHHHH
Q 042183           93 AKLLQHEDEELESGMIRMMNKEKHTALHEAVFHKIVDVVKILTREDLD--YPYSANNYNKTPLCMVAEYEHSSHMVVAIL  170 (179)
Q Consensus        93 ~~~~~~~~~~~~~~~~~~~~~~g~t~l~~A~~~g~~~~~~~Ll~~~~~--~~~~~~~~g~tpl~~A~~~~~~~~~~~~Ll  170 (179)
                      +++++.            +|..|+|.||..+-+-..++.+++++.|+.  .. ..|..|.|||-+|+. .|..++.+.++
T Consensus       263 gAd~~a------------qDS~GNTVLH~lVi~~~~~My~~~L~~ga~~l~~-v~N~qgLTPLtLAak-lGk~emf~~il  328 (782)
T KOG3676|consen  263 GADPNA------------QDSNGNTVLHMLVIHFVTEMYDLALELGANALEH-VRNNQGLTPLTLAAK-LGKKEMFQHIL  328 (782)
T ss_pred             CCCCCc------------cccCCChHHHHHHHHHHHHHHHHHHhcCCCcccc-ccccCCCChHHHHHH-hhhHHHHHHHH
Confidence            999988            999999999999999889999999999988  54 899999999999999 99999999999


Q ss_pred             hcC
Q 042183          171 KNC  173 (179)
Q Consensus       171 ~~g  173 (179)
                      ++.
T Consensus       329 e~~  331 (782)
T KOG3676|consen  329 ERR  331 (782)
T ss_pred             Hhh
Confidence            983

>PF13637 Ank_4: Ankyrin repeats (many copies); PDB: 3B95_A 3B7B_A 3F6Q_A 2KBX_A 3IXE_A 2DWZ_C 2DVW_A 3AJI_A 1S70_B 2HE0_A

Probab=99.60  E-value=5.6e-15  Score=81.88  Aligned_cols=54  Identities=31%  Similarity=0.451  Sum_probs=45.5

Q ss_pred             CCcHHHHHHHHcCCHHHHHHHHHhhcccCCchhhhhhHHHHhccCCCCcHHHHHHHcCCHHHHHHHH
Q 042183           69 GDSRSLLVAAKFGHCDIVSVLIERAKLLQHEDEELESGMIRMMNKEKHTALHEAVFHKIVDVVKILT  135 (179)
Q Consensus        69 g~t~~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~~~~~~~~~~~~g~t~l~~A~~~g~~~~~~~Ll  135 (179)
                      |.| |||+|+..|+.+++++|++++.+++.            +|.+|.||||+|+..|+.+++++|+
T Consensus         1 g~t-~lh~A~~~g~~~~~~~Ll~~~~din~------------~d~~g~t~lh~A~~~g~~~~~~~Ll   54 (54)
T PF13637_consen    1 GRT-PLHWAARSGNLEIVKLLLEHGADINA------------QDEDGRTPLHYAAKNGNIDIVKFLL   54 (54)
T ss_dssp             SSB-HHHHHHHTT-HHHHHHHHHTTSGTT-------------B-TTS--HHHHHHHTT-HHHHHHHH
T ss_pred             CCh-HHHHHHHhCCHHHHHHHHHCCCCCCC------------CCCCCCCHHHHHHHccCHHHHHHHC
Confidence            678 99999999999999999999998877            8999999999999999999999986

...

>PTZ00322 6-phosphofructo-2-kinase/fructose-2,6-biphosphatase; Provisional

Probab=99.59  E-value=1.2e-14  Score=118.24  Aligned_cols=106  Identities=22%  Similarity=0.200  Sum_probs=93.3

Q ss_pred             HHHHHHHHcCChHHHHHHHHHHHHhhCcccccccCCCCCcHHHHHHHHcCCHHHHHHHHHhhcccCCchhhhhhHHHHhc
Q 042183           32 PNLFKAAAAGNLEPFKDMAREEILEICPSLLLQVNAKGDSRSLLVAAKFGHCDIVSVLIERAKLLQHEDEELESGMIRMM  111 (179)
Q Consensus        32 ~~l~~A~~~g~~~~~~~ll~~~~~~~~~~~~~~~~~~g~t~~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~~~~~~~~~  111 (179)
                      ..|+.|+..|+.+.++.|++      .+..++.+|..|.| |||+|+.+|+.+++++|+++|++++.            +
T Consensus        84 ~~L~~aa~~G~~~~vk~LL~------~Gadin~~d~~G~T-pLh~Aa~~g~~eiv~~LL~~Gadvn~------------~  144 (664)
T PTZ00322         84 VELCQLAASGDAVGARILLT------GGADPNCRDYDGRT-PLHIACANGHVQVVRVLLEFGADPTL------------L  144 (664)
T ss_pred             HHHHHHHHcCCHHHHHHHHH------CCCCCCCcCCCCCc-HHHHHHHCCCHHHHHHHHHCCCCCCC------------C
Confidence            35889999999999999987      67788999999999 99999999999999999999998887            9


Q ss_pred             cCCCCcHHHHHHHcCCHHHHHHHHhc-------CCCCCCCCCCCCCCHHHHHH
Q 042183          112 NKEKHTALHEAVFHKIVDVVKILTRE-------DLDYPYSANNYNKTPLCMVA  157 (179)
Q Consensus       112 ~~~g~t~l~~A~~~g~~~~~~~Ll~~-------~~~~~~~~~~~g~tpl~~A~  157 (179)
                      |..|.||||+|+..|+.+++++|+++       +++.. ..+..|.+|+..+.
T Consensus       145 d~~G~TpLh~A~~~g~~~iv~~Ll~~~~~~~~~ga~~~-~~~~~g~~~~~~~~  196 (664)
T PTZ00322        145 DKDGKTPLELAEENGFREVVQLLSRHSQCHFELGANAK-PDSFTGKPPSLEDS  196 (664)
T ss_pred             CCCCCCHHHHHHHCCcHHHHHHHHhCCCcccccCCCCC-ccccCCCCccchhh
Confidence            99999999999999999999999998       66654 56666766655444

>PF13857 Ank_5: Ankyrin repeats (many copies); PDB: 1SW6_A 3EHR_B 3EHQ_A

Probab=99.57  E-value=3.5e-15  Score=83.19  Aligned_cols=47  Identities=26%  Similarity=0.270  Sum_probs=31.4

Q ss_pred             HhccCCCCcHHHHHHHcCCHHHHHHHHhcCCCCCCCCCCCCCCHHHHH
Q 042183          109 RMMNKEKHTALHEAVFHKIVDVVKILTREDLDYPYSANNYNKTPLCMV  156 (179)
Q Consensus       109 ~~~~~~g~t~l~~A~~~g~~~~~~~Ll~~~~~~~~~~~~~g~tpl~~A  156 (179)
                      +.+|..|.||||+|+.+|+.+++++|++.|+++. .+|..|+|||++|
T Consensus        10 n~~d~~G~T~LH~A~~~g~~~~v~~Ll~~g~d~~-~~d~~G~Tpl~~A   56 (56)
T PF13857_consen   10 NAQDKYGNTPLHWAARYGHSEVVRLLLQNGADPN-AKDKDGQTPLHYA   56 (56)
T ss_dssp             T---TTS--HHHHHHHHT-HHHHHHHHHCT--TT----TTS--HHHH-
T ss_pred             cCcCCCCCcHHHHHHHcCcHHHHHHHHHCcCCCC-CCcCCCCCHHHhC
Confidence            4499999999999999999999999999999987 9999999999987

>KOG0515 consensus p53-interacting protein 53BP/ASPP, contains ankyrin and SH3 domains [Cell cycle control, cell division, chromosome partitioning]

Probab=99.53  E-value=4.9e-14  Score=107.60  Aligned_cols=89  Identities=28%  Similarity=0.274  Sum_probs=82.4

Q ss_pred             HHHHHHcCCHHHHHHHHHhhcccCCchhhhhhHHHHhccCCCCcHHHHHHHcCCHHHHHHHHhcCCCCCCCCCCCCCCHH
Q 042183           74 LLVAAKFGHCDIVSVLIERAKLLQHEDEELESGMIRMMNKEKHTALHEAVFHKIVDVVKILTREDLDYPYSANNYNKTPL  153 (179)
Q Consensus        74 L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~~~~~~~~~~~~g~t~l~~A~~~g~~~~~~~Ll~~~~~~~~~~~~~g~tpl  153 (179)
                      |.-|+..|..++|+-.+..-.++..            .+..|.|+||-|+..||.+||+||++.|++++ ..|.+|||||
T Consensus       554 LLDaaLeGEldlVq~~i~ev~DpSq------------pNdEGITaLHNAiCaghyeIVkFLi~~ganVN-a~DSdGWTPL  620 (752)
T KOG0515|consen  554 LLDAALEGELDLVQRIIYEVTDPSQ------------PNDEGITALHNAICAGHYEIVKFLIEFGANVN-AADSDGWTPL  620 (752)
T ss_pred             HHhhhhcchHHHHHHHHHhhcCCCC------------CCccchhHHhhhhhcchhHHHHHHHhcCCccc-CccCCCCchh
Confidence            4568889999999999988877776            88999999999999999999999999999997 9999999999


Q ss_pred             HHHHHhcCCHHHHHHHHhcCCCC
Q 042183          154 CMVAEYEHSSHMVVAILKNCTSV  176 (179)
Q Consensus       154 ~~A~~~~~~~~~~~~Ll~~g~~~  176 (179)
                      |+|+. -++..+++.|++.|+.+
T Consensus       621 HCAAS-CNnv~~ckqLVe~Gaav  642 (752)
T KOG0515|consen  621 HCAAS-CNNVPMCKQLVESGAAV  642 (752)
T ss_pred             hhhhh-cCchHHHHHHHhccceE
Confidence            99999 99999999999999764

>KOG3676 consensus Ca2+-permeable cation channel OSM-9 and related channels (OTRPC family) [Inorganic ion transport and metabolism; Signal transduction mechanisms]

Probab=99.52  E-value=6.3e-14  Score=111.60  Aligned_cols=138  Identities=18%  Similarity=0.137  Sum_probs=108.5

Q ss_pred             CCHHHHHHHH---cCChHHHHHHHHHHHHhhCccccc----ccCCCCCcHHHHHHHHcCCHHHHHHHHHhhcccCCchh-
Q 042183           30 IDPNLFKAAA---AGNLEPFKDMAREEILEICPSLLL----QVNAKGDSRSLLVAAKFGHCDIVSVLIERAKLLQHEDE-  101 (179)
Q Consensus        30 ~~~~l~~A~~---~g~~~~~~~ll~~~~~~~~~~~~~----~~~~~g~t~~L~~A~~~g~~~~v~~ll~~~~~~~~~~~-  101 (179)
                      .++.||.|..   .++.+.++.|++     ..|..+|    .....|.| |||+|..+.+.++|++|++.|++++..-. 
T Consensus       143 GET~Lh~~lL~~~~~~n~la~~LL~-----~~p~lind~~~~eeY~GqS-aLHiAIv~~~~~~V~lLl~~gADV~aRa~G  216 (782)
T KOG3676|consen  143 GETLLHKALLNLSDGHNELARVLLE-----IFPKLINDIYTSEEYYGQS-ALHIAIVNRDAELVRLLLAAGADVHARACG  216 (782)
T ss_pred             hhhHHHHHHhcCchhHHHHHHHHHH-----HhHHHhhhhhhhHhhcCcc-hHHHHHHhccHHHHHHHHHcCCchhhHhhc
Confidence            4578999887   344577877776     3444433    24579999 99999999999999999999998876111 


Q ss_pred             -h----hhhHHHHhcc-----CCCCcHHHHHHHcCCHHHHHHHHhcCCCCCCCCCCCCCCHHHHHHHhcCCHHHHHHHHh
Q 042183          102 -E----LESGMIRMMN-----KEKHTALHEAVFHKIVDVVKILTREDLDYPYSANNYNKTPLCMVAEYEHSSHMVVAILK  171 (179)
Q Consensus       102 -~----~~~~~~~~~~-----~~g~t~l~~A~~~g~~~~~~~Ll~~~~~~~~~~~~~g~tpl~~A~~~~~~~~~~~~Ll~  171 (179)
                       .    ..+......+     ..|..||.+||..++.+|+++|+++|+|++ .+|.+|.|.||..+. +-..++-+++++
T Consensus       217 ~FF~~~dqk~~rk~T~Y~G~~YfGEyPLSfAAC~nq~eivrlLl~~gAd~~-aqDS~GNTVLH~lVi-~~~~~My~~~L~  294 (782)
T KOG3676|consen  217 AFFCPDDQKASRKSTNYTGYFYFGEYPLSFAACTNQPEIVRLLLAHGADPN-AQDSNGNTVLHMLVI-HFVTEMYDLALE  294 (782)
T ss_pred             cccCcccccccccccCCcceeeeccCchHHHHHcCCHHHHHHHHhcCCCCC-ccccCCChHHHHHHH-HHHHHHHHHHHh
Confidence             1    0000001111     348899999999999999999999999987 999999999999999 888999999999


Q ss_pred             cCCC
Q 042183          172 NCTS  175 (179)
Q Consensus       172 ~g~~  175 (179)
                      +|++
T Consensus       295 ~ga~  298 (782)
T KOG3676|consen  295 LGAN  298 (782)
T ss_pred             cCCC
Confidence            9987

>COG0666 Arp FOG: Ankyrin repeat [General function prediction only]

Probab=99.51  E-value=4e-13  Score=95.16  Aligned_cols=103  Identities=22%  Similarity=0.262  Sum_probs=93.5

Q ss_pred             ccccCCCCCcHHHHHHHHcCCHHHHHHHHHhhcccCCchhhhhhHHHHhccCCCCcHHHHHHHcCC-----HHHHHHHHh
Q 042183           62 LLQVNAKGDSRSLLVAAKFGHCDIVSVLIERAKLLQHEDEELESGMIRMMNKEKHTALHEAVFHKI-----VDVVKILTR  136 (179)
Q Consensus        62 ~~~~~~~g~t~~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~~~~~~~~~~~~g~t~l~~A~~~g~-----~~~~~~Ll~  136 (179)
                      ....+..+.+ +++.++..+..+++.+++..+.+++.            ++..|.||||+|+..++     .+++++|++
T Consensus        66 ~~~~~~~~~~-~~~~~~~~~~~~~~~~l~~~~~~~~~------------~~~~g~t~l~~a~~~~~~~~~~~~~~~~ll~  132 (235)
T COG0666          66 LAARDLDGRL-PLHSAASKGDDKIVKLLLASGADVNA------------KDADGDTPLHLAALNGNPPEGNIEVAKLLLE  132 (235)
T ss_pred             cccCCccccC-HHHHHHHcCcHHHHHHHHHcCCCccc------------ccCCCCcHHHHHHhcCCcccchHHHHHHHHH
Confidence            3445666888 99999999999999999999998877            99999999999999999     999999999


Q ss_pred             cCC--CCCCCCCCCCCCHHHHHHHhcCCHHHHHHHHhcCCCCCC
Q 042183          137 EDL--DYPYSANNYNKTPLCMVAEYEHSSHMVVAILKNCTSVSH  178 (179)
Q Consensus       137 ~~~--~~~~~~~~~g~tpl~~A~~~~~~~~~~~~Ll~~g~~~~~  178 (179)
                      .|+  +.....|..|.||||+|+. .|+.+++.+|++.|++++.
T Consensus       133 ~g~~~~~~~~~~~~g~tpl~~A~~-~~~~~~~~~ll~~~~~~~~  175 (235)
T COG0666         133 AGADLDVNNLRDEDGNTPLHWAAL-NGDADIVELLLEAGADPNS  175 (235)
T ss_pred             cCCCCCCccccCCCCCchhHHHHH-cCchHHHHHHHhcCCCCcc
Confidence            999  5565789999999999999 9999999999999988764

>PF13857 Ank_5: Ankyrin repeats (many copies); PDB: 1SW6_A 3EHR_B 3EHQ_A

Probab=99.49  E-value=4.5e-14  Score=78.69  Aligned_cols=53  Identities=26%  Similarity=0.412  Sum_probs=33.4

Q ss_pred             hCcccccccCCCCCcHHHHHHHHcCCHHHHHHHHHhhcccCCchhhhhhHHHHhccCCCCcHHHHH
Q 042183           57 ICPSLLLQVNAKGDSRSLLVAAKFGHCDIVSVLIERAKLLQHEDEELESGMIRMMNKEKHTALHEA  122 (179)
Q Consensus        57 ~~~~~~~~~~~~g~t~~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~~~~~~~~~~~~g~t~l~~A  122 (179)
                      ..+..++..|..|.| |||+||.+|+.+++++|++.+++++.            +|..|+||||+|
T Consensus         4 ~~~~~~n~~d~~G~T-~LH~A~~~g~~~~v~~Ll~~g~d~~~------------~d~~G~Tpl~~A   56 (56)
T PF13857_consen    4 HGPADVNAQDKYGNT-PLHWAARYGHSEVVRLLLQNGADPNA------------KDKDGQTPLHYA   56 (56)
T ss_dssp             --T--TT---TTS---HHHHHHHHT-HHHHHHHHHCT--TT---------------TTS--HHHH-
T ss_pred             cCcCCCcCcCCCCCc-HHHHHHHcCcHHHHHHHHHCcCCCCC------------CcCCCCCHHHhC
Confidence            345778899999999 99999999999999999999998877            999999999987

>KOG4369 consensus RTK signaling protein MASK/UNC-44 [Signal transduction mechanisms]

Probab=99.42  E-value=1.7e-13  Score=112.53  Aligned_cols=135  Identities=22%  Similarity=0.273  Sum_probs=108.0

Q ss_pred             CccccCCHHHHHHHHcCChHHHHHHHHHHHHhhCcccccccCCCCCcHHHHHHHHcCCHHHHHHHHHhhcccCCchhhhh
Q 042183           25 ISQLQIDPNLFKAAAAGNLEPFKDMAREEILEICPSLLLQVNAKGDSRSLLVAAKFGHCDIVSVLIERAKLLQHEDEELE  104 (179)
Q Consensus        25 ~~~~~~~~~l~~A~~~g~~~~~~~ll~~~~~~~~~~~~~~~~~~g~t~~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~~  104 (179)
                      ......+++|..||..|+-|.+..|+.      .+..+.-+|+.|.+ ||.+|+..||..+|+.|+++.+++..      
T Consensus       752 ~Te~n~~t~LT~acaggh~e~vellv~------rganiehrdkkgf~-plImaatagh~tvV~~llk~ha~vea------  818 (2131)
T KOG4369|consen  752 LTEPNIKTNLTSACAGGHREEVELLVV------RGANIEHRDKKGFV-PLIMAATAGHITVVQDLLKAHADVEA------  818 (2131)
T ss_pred             ccCccccccccccccCccHHHHHHHHH------hcccccccccccch-hhhhhcccCchHHHHHHHhhhhhhhh------
Confidence            455667789999999999999988887      66677889999999 99999999999999999999887655      


Q ss_pred             hHHHHhccCCCCcHHHHHHHcCCHHHHHHHHhcCCCCCCCCCCCCCCHHHHHHHhcCCHHHHHHHHhcCCCCCCC
Q 042183          105 SGMIRMMNKEKHTALHEAVFHKIVDVVKILTREDLDYPYSANNYNKTPLCMVAEYEHSSHMVVAILKNCTSVSHR  179 (179)
Q Consensus       105 ~~~~~~~~~~g~t~l~~A~~~g~~~~~~~Ll~~~~~~~~~~~~~g~tpl~~A~~~~~~~~~~~~Ll~~g~~~~~r  179 (179)
                           ..|+.+.|+|.+||..|+.+++++||..|+... .++....|||.+|.. .|..+++..|+..|++++.|
T Consensus       819 -----Qsdrtkdt~lSlacsggr~~vvelLl~~ganke-hrnvsDytPlsla~S-ggy~~iI~~llS~GseInSr  886 (2131)
T KOG4369|consen  819 -----QSDRTKDTMLSLACSGGRTRVVELLLNAGANKE-HRNVSDYTPLSLARS-GGYTKIIHALLSSGSEINSR  886 (2131)
T ss_pred             -----hcccccCceEEEecCCCcchHHHHHHHhhcccc-ccchhhcCchhhhcC-cchHHHHHHHhhcccccccc
Confidence                 245667777777777777777777777777744 677777777777777 77777777777777666543

>KOG1710 consensus MYND Zn-finger and ankyrin repeat protein [General function prediction only]

Probab=99.29  E-value=3.5e-11  Score=86.10  Aligned_cols=94  Identities=16%  Similarity=0.180  Sum_probs=85.4

Q ss_pred             CcHHHHHHHHcCCHHHHHHHHHhhcccCCchhhhhhHHHHhccCCCCcHHHHHHHcCCHHHHHHHHhcCCCCCCCCCCCC
Q 042183           70 DSRSLLVAAKFGHCDIVSVLIERAKLLQHEDEELESGMIRMMNKEKHTALHEAVFHKIVDVVKILTREDLDYPYSANNYN  149 (179)
Q Consensus        70 ~t~~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~~~~~~~~~~~~g~t~l~~A~~~g~~~~~~~Ll~~~~~~~~~~~~~g  149 (179)
                      .. +|.-+.-.+..+-...||+-....+.            +|..|.++|..|+..|+.++++.|++.|+|++...+..+
T Consensus        13 ~~-~Lle~i~Kndt~~a~~LLs~vr~vn~------------~D~sGMs~LahAaykGnl~~v~lll~~gaDvN~~qhg~~   79 (396)
T KOG1710|consen   13 KS-PLLEAIDKNDTEAALALLSTVRQVNQ------------RDPSGMSVLAHAAYKGNLTLVELLLELGADVNDKQHGTL   79 (396)
T ss_pred             hh-HHHHHHccCcHHHHHHHHHHhhhhhc------------cCCCcccHHHHHHhcCcHHHHHHHHHhCCCcCccccccc
Confidence            45 88899999999988899987665555            999999999999999999999999999999988888899


Q ss_pred             CCHHHHHHHhcCCHHHHHHHHhcCCCCC
Q 042183          150 KTPLCMVAEYEHSSHMVVAILKNCTSVS  177 (179)
Q Consensus       150 ~tpl~~A~~~~~~~~~~~~Ll~~g~~~~  177 (179)
                      -|||++|+. .|+.++.++|++.|+...
T Consensus        80 YTpLmFAAL-SGn~dvcrllldaGa~~~  106 (396)
T KOG1710|consen   80 YTPLMFAAL-SGNQDVCRLLLDAGARMY  106 (396)
T ss_pred             ccHHHHHHH-cCCchHHHHHHhccCccc
Confidence            999999999 999999999999998753

>KOG0782 consensus Predicted diacylglycerol kinase [Signal transduction mechanisms]

Probab=99.25  E-value=7.8e-11  Score=91.26  Aligned_cols=122  Identities=19%  Similarity=0.249  Sum_probs=107.5

Q ss_pred             HHHHHHHHcCChHHHHHHHHHHHHhhCcccccccCCCCCcHHHHHHHHcCCHHHHHHHHHhhcccCCchhhhhhHHHHhc
Q 042183           32 PNLFKAAAAGNLEPFKDMAREEILEICPSLLLQVNAKGDSRSLLVAAKFGHCDIVSVLIERAKLLQHEDEELESGMIRMM  111 (179)
Q Consensus        32 ~~l~~A~~~g~~~~~~~ll~~~~~~~~~~~~~~~~~~g~t~~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~~~~~~~~~  111 (179)
                      ..+..|+..+++-.++....      .+..+..++.+..+ .||+|+..|+-++|+|+|+++..          ..+++.
T Consensus       868 eeil~av~~~D~~klqE~h~------~gg~ll~~~~~~~s-llh~a~~tg~~eivkyildh~p~----------elld~~  930 (1004)
T KOG0782|consen  868 EEILRAVLSSDLMKLQETHL------NGGSLLIQGPDHCS-LLHYAAKTGNGEIVKYILDHGPS----------ELLDMA  930 (1004)
T ss_pred             HHHHHHHHhccHHHHHHHHh------cCCceEeeCcchhh-HHHHHHhcCChHHHHHHHhcCCH----------HHHHHH
Confidence            34788899998777766544      56677788999999 99999999999999999999863          467788


Q ss_pred             cCCCCcHHHHHHHcCCHHHHHHHHhcCCCCCCCCCCCCCCHHHHHHHhcCCHHHHHHHHhc
Q 042183          112 NKEKHTALHEAVFHKIVDVVKILTREDLDYPYSANNYNKTPLCMVAEYEHSSHMVVAILKN  172 (179)
Q Consensus       112 ~~~g~t~l~~A~~~g~~~~~~~Ll~~~~~~~~~~~~~g~tpl~~A~~~~~~~~~~~~Ll~~  172 (179)
                      +..|.|+||-|+..++-.++.+|++.|+.+. ..|..|.||-.-|-. .|..+.+.||-.+
T Consensus       931 de~get~lhkaa~~~~r~vc~~lvdagasl~-ktd~kg~tp~eraqq-a~d~dlaayle~r  989 (1004)
T KOG0782|consen  931 DETGETALHKAACQRNRAVCQLLVDAGASLR-KTDSKGKTPQERAQQ-AGDPDLAAYLESR  989 (1004)
T ss_pred             hhhhhHHHHHHHHhcchHHHHHHHhcchhhe-ecccCCCChHHHHHh-cCCchHHHHHhhh
Confidence            9999999999999999999999999999986 899999999999999 9999999998765

>KOG0783 consensus Uncharacterized conserved protein, contains ankyrin and BTB/POZ domains [Function unknown]

Probab=99.23  E-value=7e-12  Score=100.52  Aligned_cols=89  Identities=17%  Similarity=0.240  Sum_probs=81.1

Q ss_pred             hhCcccccccCCCCCcHHHHHHHHcCCHHHHHHHHHhhcccCCchhhhhhHHHHhccC-CCCcHHHHHHHcCCHHHHHHH
Q 042183           56 EICPSLLLQVNAKGDSRSLLVAAKFGHCDIVSVLIERAKLLQHEDEELESGMIRMMNK-EKHTALHEAVFHKIVDVVKIL  134 (179)
Q Consensus        56 ~~~~~~~~~~~~~g~t~~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~~~~~~~~~~~-~g~t~l~~A~~~g~~~~~~~L  134 (179)
                      ..+....+++|..|++ +||+|+..+...++++|+++|.+...            +|. .|+||||.|..+|+++|+..|
T Consensus        39 k~c~n~anikD~~GR~-alH~~~S~~k~~~l~wLlqhGidv~v------------qD~ESG~taLHRaiyyG~idca~lL  105 (1267)
T KOG0783|consen   39 KSCQNLANIKDRYGRT-ALHIAVSENKNSFLRWLLQHGIDVFV------------QDEESGYTALHRAIYYGNIDCASLL  105 (1267)
T ss_pred             HhhhhhhhHHHhhccc-eeeeeeccchhHHHHHHHhcCceeee------------ccccccchHhhHhhhhchHHHHHHH
Confidence            4566778999999999 99999999999999999999997766            665 599999999999999999999


Q ss_pred             HhcCCCCCCCCCCCCCCHHHHHHH
Q 042183          135 TREDLDYPYSANNYNKTPLCMVAE  158 (179)
Q Consensus       135 l~~~~~~~~~~~~~g~tpl~~A~~  158 (179)
                      +.+|..+. ++|..|.+||..-++
T Consensus       106 L~~g~SL~-i~Dkeglsplq~~~r  128 (1267)
T KOG0783|consen  106 LSKGRSLR-IKDKEGLSPLQFLSR  128 (1267)
T ss_pred             HhcCCceE-EecccCCCHHHHHhh
Confidence            99999865 999999999998877

>KOG4369 consensus RTK signaling protein MASK/UNC-44 [Signal transduction mechanisms]

Probab=99.12  E-value=7.3e-11  Score=97.49  Aligned_cols=126  Identities=17%  Similarity=0.236  Sum_probs=96.5

Q ss_pred             HHHHHHHHcCChHHHHHHHHHHHHhhCccccc-ccCCCCCcHHHHHHHHcCCHHHHHHHHHhhcccCCchhhhhhHHHHh
Q 042183           32 PNLFKAAAAGNLEPFKDMAREEILEICPSLLL-QVNAKGDSRSLLVAAKFGHCDIVSVLIERAKLLQHEDEELESGMIRM  110 (179)
Q Consensus        32 ~~l~~A~~~g~~~~~~~ll~~~~~~~~~~~~~-~~~~~g~t~~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~~~~~~~~  110 (179)
                      .+|..|+-.|+...|+.|++      ....+. ..|..+.| +|.+||..|+.+++++||..|++...            
T Consensus       792 ~plImaatagh~tvV~~llk------~ha~veaQsdrtkdt-~lSlacsggr~~vvelLl~~gankeh------------  852 (2131)
T KOG4369|consen  792 VPLIMAATAGHITVVQDLLK------AHADVEAQSDRTKDT-MLSLACSGGRTRVVELLLNAGANKEH------------  852 (2131)
T ss_pred             hhhhhhcccCchHHHHHHHh------hhhhhhhhcccccCc-eEEEecCCCcchHHHHHHHhhccccc------------
Confidence            67999999999999999987      222333 46778888 99999999999999999999988776            


Q ss_pred             ccCCCCcHHHHHHHcCCHHHHHHHHhcCCCCC-CCCCCCCCCHHHHHHHhcCCHHHHHHHHhcCCCCC
Q 042183          111 MNKEKHTALHEAVFHKIVDVVKILTREDLDYP-YSANNYNKTPLCMVAEYEHSSHMVVAILKNCTSVS  177 (179)
Q Consensus       111 ~~~~g~t~l~~A~~~g~~~~~~~Ll~~~~~~~-~~~~~~g~tpl~~A~~~~~~~~~~~~Ll~~g~~~~  177 (179)
                      ++....|||..|...|.++++..|+..|+.++ +.....|-.||.+|.+ +||...++.|++.|.|++
T Consensus       853 rnvsDytPlsla~Sggy~~iI~~llS~GseInSrtgSklgisPLmlatm-ngh~~at~~ll~~gsdiN  919 (2131)
T KOG4369|consen  853 RNVSDYTPLSLARSGGYTKIIHALLSSGSEINSRTGSKLGISPLMLATM-NGHQAATLSLLQPGSDIN  919 (2131)
T ss_pred             cchhhcCchhhhcCcchHHHHHHHhhcccccccccccccCcchhhhhhh-ccccHHHHHHhcccchhc
Confidence            67777777777777777777777777776653 1334456677777777 777777777777776654

>PF13606 Ank_3: Ankyrin repeat

Probab=99.07  E-value=2.6e-10  Score=54.82  Aligned_cols=28  Identities=25%  Similarity=0.395  Sum_probs=18.1

Q ss_pred             CCCHHHHHHHhcCCHHHHHHHHhcCCCCC
Q 042183          149 NKTPLCMVAEYEHSSHMVVAILKNCTSVS  177 (179)
Q Consensus       149 g~tpl~~A~~~~~~~~~~~~Ll~~g~~~~  177 (179)
                      |+||||+|+. .|+.+++++|+++|+|++
T Consensus         2 G~T~Lh~A~~-~g~~e~v~~Ll~~gadvn   29 (30)
T PF13606_consen    2 GNTPLHLAAS-NGNIEIVKYLLEHGADVN   29 (30)
T ss_pred             CCCHHHHHHH-hCCHHHHHHHHHcCCCCC
Confidence            5666666666 666666666666666654

>PF13606 Ank_3: Ankyrin repeat

Probab=99.04  E-value=4.1e-10  Score=54.09  Aligned_cols=29  Identities=28%  Similarity=0.322  Sum_probs=27.1

Q ss_pred             CCCcHHHHHHHcCCHHHHHHHHhcCCCCC
Q 042183          114 EKHTALHEAVFHKIVDVVKILTREDLDYP  142 (179)
Q Consensus       114 ~g~t~l~~A~~~g~~~~~~~Ll~~~~~~~  142 (179)
                      +|+||||+||..|+.+++++|++.|++++
T Consensus         1 ~G~T~Lh~A~~~g~~e~v~~Ll~~gadvn   29 (30)
T PF13606_consen    1 NGNTPLHLAASNGNIEIVKYLLEHGADVN   29 (30)
T ss_pred             CCCCHHHHHHHhCCHHHHHHHHHcCCCCC
Confidence            58999999999999999999999999864

>KOG0506 consensus Glutaminase (contains ankyrin repeat) [Amino acid transport and metabolism]

Probab=99.03  E-value=3.9e-10  Score=85.58  Aligned_cols=92  Identities=23%  Similarity=0.263  Sum_probs=76.4

Q ss_pred             CCCCCcHHHHHHHHcCCHHHHHHHHHhhcccCCchhhhhhHHHHhccCCCCcHHHHHHHcCCHHHHHHHHhc-CCCCCCC
Q 042183           66 NAKGDSRSLLVAAKFGHCDIVSVLIERAKLLQHEDEELESGMIRMMNKEKHTALHEAVFHKIVDVVKILTRE-DLDYPYS  144 (179)
Q Consensus        66 ~~~g~t~~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~~~~~~~~~~~~g~t~l~~A~~~g~~~~~~~Ll~~-~~~~~~~  144 (179)
                      +.++.. .+++|+..|....++-+.-.|.+...            +|.+..|+||+|+..|+++++++|++. +.+ ...
T Consensus       503 ~~~~~i-~~~~aa~~GD~~alrRf~l~g~D~~~------------~DyD~RTaLHvAAaEG~v~v~kfl~~~~kv~-~~~  568 (622)
T KOG0506|consen  503 ENDTVI-NVMYAAKNGDLSALRRFALQGMDLET------------KDYDDRTALHVAAAEGHVEVVKFLLNACKVD-PDP  568 (622)
T ss_pred             cccchh-hhhhhhhcCCHHHHHHHHHhcccccc------------cccccchhheeecccCceeHHHHHHHHHcCC-CCh
Confidence            345556 78899999999988888888877666            888999999999999999999999887 344 347


Q ss_pred             CCCCCCCHHHHHHHhcCCHHHHHHHHhc
Q 042183          145 ANNYNKTPLCMVAEYEHSSHMVVAILKN  172 (179)
Q Consensus       145 ~~~~g~tpl~~A~~~~~~~~~~~~Ll~~  172 (179)
                      +|.+|+|||+=|.. -+|.+++++|.+.
T Consensus       569 kDRw~rtPlDdA~~-F~h~~v~k~L~~~  595 (622)
T KOG0506|consen  569 KDRWGRTPLDDAKH-FKHKEVVKLLEEA  595 (622)
T ss_pred             hhccCCCcchHhHh-cCcHHHHHHHHHH
Confidence            89999999999999 8999999988764

>KOG0818 consensus GTPase-activating proteins of the GIT family [Signal transduction mechanisms]

Probab=99.03  E-value=1.8e-09  Score=82.39  Aligned_cols=87  Identities=13%  Similarity=0.120  Sum_probs=78.1

Q ss_pred             HHHHHHHcCCHHHHHHHHHhhcccCCchhhhhhHHHHhccCCCCcHHHHHHHcCCHHHHHHHHhcCCCCCCCCCCCCCCH
Q 042183           73 SLLVAAKFGHCDIVSVLIERAKLLQHEDEELESGMIRMMNKEKHTALHEAVFHKIVDVVKILTREDLDYPYSANNYNKTP  152 (179)
Q Consensus        73 ~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~~~~~~~~~~~~g~t~l~~A~~~g~~~~~~~Ll~~~~~~~~~~~~~g~tp  152 (179)
                      -||-.++.|+.+..--||..|+..+.           .....|.||||.|++.|+.--+++|+-+|+|+. ..|.+|+||
T Consensus       136 QLhasvRt~nlet~LRll~lGA~~N~-----------~hpekg~TpLHvAAk~Gq~~Q~ElL~vYGAD~~-a~d~~GmtP  203 (669)
T KOG0818|consen  136 QLHSSVRTGNLETCLRLLSLGAQANF-----------FHPEKGNTPLHVAAKAGQILQAELLAVYGADPG-AQDSSGMTP  203 (669)
T ss_pred             HHHHHhhcccHHHHHHHHHcccccCC-----------CCcccCCchhHHHHhccchhhhhHHhhccCCCC-CCCCCCCcH
Confidence            48999999999998899999998877           233468999999999999999999999999987 899999999


Q ss_pred             HHHHHHhcCCHHHHHHHHhc
Q 042183          153 LCMVAEYEHSSHMVVAILKN  172 (179)
Q Consensus       153 l~~A~~~~~~~~~~~~Ll~~  172 (179)
                      +.+|-. .||.+++.-|++.
T Consensus       204 ~~~AR~-~gH~~laeRl~e~  222 (669)
T KOG0818|consen  204 VDYARQ-GGHHELAERLVEI  222 (669)
T ss_pred             HHHHHh-cCchHHHHHHHHH
Confidence            999999 9999998887764

>KOG0506 consensus Glutaminase (contains ankyrin repeat) [Amino acid transport and metabolism]

Probab=99.01  E-value=4.8e-10  Score=85.09  Aligned_cols=87  Identities=26%  Similarity=0.284  Sum_probs=76.8

Q ss_pred             HHHHHHHHcCChHHHHHHHHHHHHhhCcccccccCCCCCcHHHHHHHHcCCHHHHHHHHHh-hcccCCchhhhhhHHHHh
Q 042183           32 PNLFKAAAAGNLEPFKDMAREEILEICPSLLLQVNAKGDSRSLLVAAKFGHCDIVSVLIER-AKLLQHEDEELESGMIRM  110 (179)
Q Consensus        32 ~~l~~A~~~g~~~~~~~ll~~~~~~~~~~~~~~~~~~g~t~~L~~A~~~g~~~~v~~ll~~-~~~~~~~~~~~~~~~~~~  110 (179)
                      -++++|++.|++..++.+.=      .+.+++.+|.+.+| +||.|+..|+.+++++|++. ..++..            
T Consensus       508 i~~~~aa~~GD~~alrRf~l------~g~D~~~~DyD~RT-aLHvAAaEG~v~v~kfl~~~~kv~~~~------------  568 (622)
T KOG0506|consen  508 INVMYAAKNGDLSALRRFAL------QGMDLETKDYDDRT-ALHVAAAEGHVEVVKFLLNACKVDPDP------------  568 (622)
T ss_pred             hhhhhhhhcCCHHHHHHHHH------hcccccccccccch-hheeecccCceeHHHHHHHHHcCCCCh------------
Confidence            45899999999999998764      56788999999999 99999999999999999975 444444            


Q ss_pred             ccCCCCcHHHHHHHcCCHHHHHHHHhc
Q 042183          111 MNKEKHTALHEAVFHKIVDVVKILTRE  137 (179)
Q Consensus       111 ~~~~g~t~l~~A~~~g~~~~~~~Ll~~  137 (179)
                      +|.+|.|||.-|...+|.+++++|-+.
T Consensus       569 kDRw~rtPlDdA~~F~h~~v~k~L~~~  595 (622)
T KOG0506|consen  569 KDRWGRTPLDDAKHFKHKEVVKLLEEA  595 (622)
T ss_pred             hhccCCCcchHhHhcCcHHHHHHHHHH
Confidence            899999999999999999999999765

>KOG3609 consensus Receptor-activated Ca2+-permeable cation channels (STRPC family) [Inorganic ion transport and metabolism; Signal transduction mechanisms]

Probab=99.01  E-value=2.3e-09  Score=86.50  Aligned_cols=125  Identities=14%  Similarity=0.131  Sum_probs=102.0

Q ss_pred             cCCHHHHHHHHcCChHHHHHHHHHHHHhhCcccccccCCCCCcHHHHHHHHcCCHHHHHHHHHhhcccCCchhhhhhHHH
Q 042183           29 QIDPNLFKAAAAGNLEPFKDMAREEILEICPSLLLQVNAKGDSRSLLVAAKFGHCDIVSVLIERAKLLQHEDEELESGMI  108 (179)
Q Consensus        29 ~~~~~l~~A~~~g~~~~~~~ll~~~~~~~~~~~~~~~~~~g~t~~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~~~~~~  108 (179)
                      ..+..+..|++.|+.-.|+.++.+...  ..-++|..|.-|.+ +|+.|..+.+.+++++|+++....            
T Consensus        24 ~~e~~fL~a~E~gd~~~V~k~l~~~~~--~~lninc~d~lGr~-al~iai~nenle~~eLLl~~~~~~------------   88 (822)
T KOG3609|consen   24 EGEKGFLLAHENGDVPLVAKALEYKAV--SKLNINCRDPLGRL-ALHIAIDNENLELQELLLDTSSEE------------   88 (822)
T ss_pred             hhhHHHHHHHHcCChHHHHHHHHhccc--cccchhccChHhhh-ceecccccccHHHHHHHhcCcccc------------
Confidence            344668899999999999999873221  33467889999999 999999999999999999986422            


Q ss_pred             HhccCCCCcHHHHHHHcCCHHHHHHHHhcCCCC---------CCCCCCCCCCHHHHHHHhcCCHHHHHHHHhcCCCC
Q 042183          109 RMMNKEKHTALHEAVFHKIVDVVKILTREDLDY---------PYSANNYNKTPLCMVAEYEHSSHMVVAILKNCTSV  176 (179)
Q Consensus       109 ~~~~~~g~t~l~~A~~~g~~~~~~~Ll~~~~~~---------~~~~~~~g~tpl~~A~~~~~~~~~~~~Ll~~g~~~  176 (179)
                             ..+|..|+..|..++|+.++.+-...         +...-..+.||+.+||. .+++||+++|+++|+++
T Consensus        89 -------gdALL~aI~~~~v~~VE~ll~~~~~~~~~~~~~d~~~~~ft~ditPliLAAh-~NnyEil~~Ll~kg~~i  157 (822)
T KOG3609|consen   89 -------GDALLLAIAVGSVPLVELLLVHFVDAPYLERSGDANSPHFTPDITPLMLAAH-LNNFEILQCLLTRGHCI  157 (822)
T ss_pred             -------chHHHHHHHHHHHHHHHHHHhcccccchhccccccCcccCCCCccHHHHHHH-hcchHHHHHHHHcCCCC
Confidence                   35899999999999999999873322         11233457899999999 99999999999999875

>KOG0705 consensus GTPase-activating protein Centaurin gamma (contains Ras-like GTPase, PH and ankyrin repeat domains) [Signal transduction mechanisms]

Probab=98.97  E-value=2.8e-09  Score=82.75  Aligned_cols=92  Identities=17%  Similarity=0.120  Sum_probs=77.6

Q ss_pred             HHHHHHcCCHHHHHHHHHhhcccCCchhhhhhHHHHhccCCCCcHHHHHHHcCCHHHHHHHHhcCCCCCCCCCCCCCCHH
Q 042183           74 LLVAAKFGHCDIVSVLIERAKLLQHEDEELESGMIRMMNKEKHTALHEAVFHKIVDVVKILTREDLDYPYSANNYNKTPL  153 (179)
Q Consensus        74 L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~~~~~~~~~~~~g~t~l~~A~~~g~~~~~~~Ll~~~~~~~~~~~~~g~tpl  153 (179)
                      |..|+...++..+-+||.+|.....        .--..+.+|.|+||+||..|++.+.++|+-+|.|+. .+|.+|.|||
T Consensus       628 Ll~A~~~~Dl~t~~lLLAhg~~~e~--------~~t~~~~~grt~LHLa~~~gnVvl~QLLiWyg~dv~-~rda~g~t~l  698 (749)
T KOG0705|consen  628 LLRAVAAEDLQTAILLLAHGSREEV--------NETCGEGDGRTALHLAARKGNVVLAQLLIWYGVDVM-ARDAHGRTAL  698 (749)
T ss_pred             HHHHHHHHHHHHHHHHHhccCchhh--------hccccCCCCcchhhhhhhhcchhHHHHHHHhCccce-ecccCCchhh
Confidence            5677777888888999999864322        001134567999999999999999999999999987 8999999999


Q ss_pred             HHHHHhcCCHHHHHHHHhcCCC
Q 042183          154 CMVAEYEHSSHMVVAILKNCTS  175 (179)
Q Consensus       154 ~~A~~~~~~~~~~~~Ll~~g~~  175 (179)
                      .+|-. .|..+|+..|++.|.-
T Consensus       699 ~yar~-a~sqec~d~llq~gcp  719 (749)
T KOG0705|consen  699 FYARQ-AGSQECIDVLLQYGCP  719 (749)
T ss_pred             hhHhh-cccHHHHHHHHHcCCC
Confidence            99999 9999999999999853

>PF00023 Ank: Ankyrin repeat Hereditary spherocytosis; InterPro: IPR002110 The ankyrin repeat is one of the most common protein-protein interaction motifs in nature

Probab=98.94  E-value=2.2e-09  Score=52.93  Aligned_cols=29  Identities=31%  Similarity=0.384  Sum_probs=20.7

Q ss_pred             CCCcHHHHHHHcCCHHHHHHHHhcCCCCC
Q 042183          114 EKHTALHEAVFHKIVDVVKILTREDLDYP  142 (179)
Q Consensus       114 ~g~t~l~~A~~~g~~~~~~~Ll~~~~~~~  142 (179)
                      +|.||||+|+..|+.+++++|+++|++++
T Consensus         1 dG~TpLh~A~~~~~~~~v~~Ll~~ga~~~   29 (33)
T PF00023_consen    1 DGNTPLHYAAQRGHPDIVKLLLKHGADIN   29 (33)
T ss_dssp             TSBBHHHHHHHTTCHHHHHHHHHTTSCTT
T ss_pred             CcccHHHHHHHHHHHHHHHHHHHCcCCCC
Confidence            46677777777777777777777777754

Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].; GO: 0005515 protein binding; PDB: 1D9S_A 1NFI_F 1IKN_D 1WDY_A 1OT8_C 1QYM_A 1TR4_A 1UOH_A 1N11_A 1K1A_A ....

>KOG0522 consensus Ankyrin repeat protein [General function prediction only]

Probab=98.89  E-value=6e-09  Score=80.18  Aligned_cols=89  Identities=18%  Similarity=0.262  Sum_probs=77.3

Q ss_pred             HHHHHHHHcCChHHHHHHHHHHHHhhCcccccccCCCCCcHHHHHHHHcCCHHHHHHHHHhhcccCCchhhhhhHHHHhc
Q 042183           32 PNLFKAAAAGNLEPFKDMAREEILEICPSLLLQVNAKGDSRSLLVAAKFGHCDIVSVLIERAKLLQHEDEELESGMIRMM  111 (179)
Q Consensus        32 ~~l~~A~~~g~~~~~~~ll~~~~~~~~~~~~~~~~~~g~t~~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~~~~~~~~~  111 (179)
                      .++|.+....+.+.+...+.   .+ ....++.+|..|.| |||.|+..|+.+.++.|+..+++...            +
T Consensus        22 ~~lh~~~~~~~~~sl~~el~---~~-~~~~id~~D~~g~T-pLhlAV~Lg~~~~a~~Ll~a~Adv~~------------k   84 (560)
T KOG0522|consen   22 KPLHWAVVTTDSDSLEQELL---AK-VSLVIDRRDPPGRT-PLHLAVRLGHVEAARILLSAGADVSI------------K   84 (560)
T ss_pred             cccchhhhccchhhHHHHHh---hh-hhceeccccCCCCc-cHHHHHHhcCHHHHHHHHhcCCCccc------------c
Confidence            56999999999888877654   22 44567889999999 99999999999999999999998877            9


Q ss_pred             cCCCCcHHHHHHHcCCHHHHHHHHhc
Q 042183          112 NKEKHTALHEAVFHKIVDVVKILTRE  137 (179)
Q Consensus       112 ~~~g~t~l~~A~~~g~~~~~~~Ll~~  137 (179)
                      +..||+|||.|+.+|+.+++..++.+
T Consensus        85 N~~gWs~L~EAv~~g~~q~i~~vlr~  110 (560)
T KOG0522|consen   85 NNEGWSPLHEAVSTGNEQIITEVLRH  110 (560)
T ss_pred             ccccccHHHHHHHcCCHHHHHHHHHH
Confidence            99999999999999999988777764

>PF00023 Ank: Ankyrin repeat Hereditary spherocytosis; InterPro: IPR002110 The ankyrin repeat is one of the most common protein-protein interaction motifs in nature

Probab=98.89  E-value=2.9e-09  Score=52.45  Aligned_cols=31  Identities=26%  Similarity=0.388  Sum_probs=28.7

Q ss_pred             CCCCHHHHHHHhcCCHHHHHHHHhcCCCCCCC
Q 042183          148 YNKTPLCMVAEYEHSSHMVVAILKNCTSVSHR  179 (179)
Q Consensus       148 ~g~tpl~~A~~~~~~~~~~~~Ll~~g~~~~~r  179 (179)
                      +|.||||+|+. .|+.+++++|+++|++++.+
T Consensus         1 dG~TpLh~A~~-~~~~~~v~~Ll~~ga~~~~~   31 (33)
T PF00023_consen    1 DGNTPLHYAAQ-RGHPDIVKLLLKHGADINAR   31 (33)
T ss_dssp             TSBBHHHHHHH-TTCHHHHHHHHHTTSCTTCB
T ss_pred             CcccHHHHHHH-HHHHHHHHHHHHCcCCCCCC
Confidence            48999999999 99999999999999998753

Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].; GO: 0005515 protein binding; PDB: 1D9S_A 1NFI_F 1IKN_D 1WDY_A 1OT8_C 1QYM_A 1TR4_A 1UOH_A 1N11_A 1K1A_A ....

>KOG0522 consensus Ankyrin repeat protein [General function prediction only]

Probab=98.82  E-value=1.9e-08  Score=77.47  Aligned_cols=87  Identities=23%  Similarity=0.258  Sum_probs=70.1

Q ss_pred             HHHHHHHcCCHH-HHHHHHHhhcccCCchhhhhhHHHHhccCCCCcHHHHHHHcCCHHHHHHHHhcCCCCCCCCCCCCCC
Q 042183           73 SLLVAAKFGHCD-IVSVLIERAKLLQHEDEELESGMIRMMNKEKHTALHEAVFHKIVDVVKILTREDLDYPYSANNYNKT  151 (179)
Q Consensus        73 ~L~~A~~~g~~~-~v~~ll~~~~~~~~~~~~~~~~~~~~~~~~g~t~l~~A~~~g~~~~~~~Ll~~~~~~~~~~~~~g~t  151 (179)
                      |+|+++.....+ +.+.+... ...          .+...|..|.||||.|+..|+.++++.|+..|+++. .+|..|++
T Consensus        23 ~lh~~~~~~~~~sl~~el~~~-~~~----------~id~~D~~g~TpLhlAV~Lg~~~~a~~Ll~a~Adv~-~kN~~gWs   90 (560)
T KOG0522|consen   23 PLHWAVVTTDSDSLEQELLAK-VSL----------VIDRRDPPGRTPLHLAVRLGHVEAARILLSAGADVS-IKNNEGWS   90 (560)
T ss_pred             ccchhhhccchhhHHHHHhhh-hhc----------eeccccCCCCccHHHHHHhcCHHHHHHHHhcCCCcc-cccccccc
Confidence            589998887765 43434333 211          223388889999999999999999999999999987 89999999


Q ss_pred             HHHHHHHhcCCHHHHHHHHhc
Q 042183          152 PLCMVAEYEHSSHMVVAILKN  172 (179)
Q Consensus       152 pl~~A~~~~~~~~~~~~Ll~~  172 (179)
                      |||-|+. .|+.+++..++.+
T Consensus        91 ~L~EAv~-~g~~q~i~~vlr~  110 (560)
T KOG0522|consen   91 PLHEAVS-TGNEQIITEVLRH  110 (560)
T ss_pred             HHHHHHH-cCCHHHHHHHHHH
Confidence            9999999 9999887777654

>KOG0818 consensus GTPase-activating proteins of the GIT family [Signal transduction mechanisms]

Probab=98.81  E-value=3.4e-08  Score=75.68  Aligned_cols=88  Identities=19%  Similarity=0.140  Sum_probs=75.6

Q ss_pred             cCCHHHHHHHHcCChHHHHHHHHHHHHhhCcccccccCC-CCCcHHHHHHHHcCCHHHHHHHHHhhcccCCchhhhhhHH
Q 042183           29 QIDPNLFKAAAAGNLEPFKDMAREEILEICPSLLLQVNA-KGDSRSLLVAAKFGHCDIVSVLIERAKLLQHEDEELESGM  107 (179)
Q Consensus        29 ~~~~~l~~A~~~g~~~~~~~ll~~~~~~~~~~~~~~~~~-~g~t~~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~~~~~  107 (179)
                      ....+||-.++.|+++..-.|+.      .+...|..+. .|.| |||.|++.|+..=+++|+-+|+++..         
T Consensus       132 ~LsrQLhasvRt~nlet~LRll~------lGA~~N~~hpekg~T-pLHvAAk~Gq~~Q~ElL~vYGAD~~a---------  195 (669)
T KOG0818|consen  132 DLSKQLHSSVRTGNLETCLRLLS------LGAQANFFHPEKGNT-PLHVAAKAGQILQAELLAVYGADPGA---------  195 (669)
T ss_pred             HHHHHHHHHhhcccHHHHHHHHH------cccccCCCCcccCCc-hhHHHHhccchhhhhHHhhccCCCCC---------
Confidence            34577999999999999988887      5666677664 6777 99999999999999999999999988         


Q ss_pred             HHhccCCCCcHHHHHHHcCCHHHHHHHH
Q 042183          108 IRMMNKEKHTALHEAVFHKIVDVVKILT  135 (179)
Q Consensus       108 ~~~~~~~g~t~l~~A~~~g~~~~~~~Ll  135 (179)
                         +|..|.||+.+|-..||-++.+.|+
T Consensus       196 ---~d~~GmtP~~~AR~~gH~~laeRl~  220 (669)
T KOG0818|consen  196 ---QDSSGMTPVDYARQGGHHELAERLV  220 (669)
T ss_pred             ---CCCCCCcHHHHHHhcCchHHHHHHH
Confidence               9999999999999999976665554

>KOG0705 consensus GTPase-activating protein Centaurin gamma (contains Ras-like GTPase, PH and ankyrin repeat domains) [Signal transduction mechanisms]

Probab=98.75  E-value=4.1e-08  Score=76.46  Aligned_cols=95  Identities=18%  Similarity=0.098  Sum_probs=79.0

Q ss_pred             CHHHHHHHHcCChHHHHHHHHHHHHhhCcccccccCCCCCcHHHHHHHHcCCHHHHHHHHHhhcccCCchhhhhhHHHHh
Q 042183           31 DPNLFKAAAAGNLEPFKDMAREEILEICPSLLLQVNAKGDSRSLLVAAKFGHCDIVSVLIERAKLLQHEDEELESGMIRM  110 (179)
Q Consensus        31 ~~~l~~A~~~g~~~~~~~ll~~~~~~~~~~~~~~~~~~g~t~~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~~~~~~~~  110 (179)
                      ...|..|....|+..+..||..+.  ....+-...+.+|.| +||+||+.|++.+.++|+=+|.+...            
T Consensus       625 gqqLl~A~~~~Dl~t~~lLLAhg~--~~e~~~t~~~~~grt-~LHLa~~~gnVvl~QLLiWyg~dv~~------------  689 (749)
T KOG0705|consen  625 GQQLLRAVAAEDLQTAILLLAHGS--REEVNETCGEGDGRT-ALHLAARKGNVVLAQLLIWYGVDVMA------------  689 (749)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhccC--chhhhccccCCCCcc-hhhhhhhhcchhHHHHHHHhCcccee------------
Confidence            456889999999988888876221  111122346678899 99999999999999999999988777            


Q ss_pred             ccCCCCcHHHHHHHcCCHHHHHHHHhcCCC
Q 042183          111 MNKEKHTALHEAVFHKIVDVVKILTREDLD  140 (179)
Q Consensus       111 ~~~~g~t~l~~A~~~g~~~~~~~Ll~~~~~  140 (179)
                      +|..|.|+|.+|-+.|..+|++.|+.+|+.
T Consensus       690 rda~g~t~l~yar~a~sqec~d~llq~gcp  719 (749)
T KOG0705|consen  690 RDAHGRTALFYARQAGSQECIDVLLQYGCP  719 (749)
T ss_pred             cccCCchhhhhHhhcccHHHHHHHHHcCCC
Confidence            999999999999999999999999999875

>KOG0511 consensus Ankyrin repeat protein [General function prediction only]

Probab=98.48  E-value=1.1e-06  Score=65.61  Aligned_cols=68  Identities=21%  Similarity=0.174  Sum_probs=59.1

Q ss_pred             HHHHHHHcCCHHHHHHHHHhhcccCCchhhhhhHHHHhccCCCCcHHHHHHHcCCHHHHHHHHhcCCCCCCCCCC-CCCC
Q 042183           73 SLLVAAKFGHCDIVSVLIERAKLLQHEDEELESGMIRMMNKEKHTALHEAVFHKIVDVVKILTREDLDYPYSANN-YNKT  151 (179)
Q Consensus        73 ~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~~~~~~~~~~~~g~t~l~~A~~~g~~~~~~~Ll~~~~~~~~~~~~-~g~t  151 (179)
                      -|..||+.|..+.|++|++.|.++|.            .|+...+||.+|+.-||.+++++|+++|+-+.  +|. .|.-
T Consensus        39 elceacR~GD~d~v~~LVetgvnVN~------------vD~fD~spL~lAsLcGHe~vvklLLenGAiC~--rdtf~G~R  104 (516)
T KOG0511|consen   39 ELCEACRAGDVDRVRYLVETGVNVNA------------VDRFDSSPLYLASLCGHEDVVKLLLENGAICS--RDTFDGDR  104 (516)
T ss_pred             HHHHHhhcccHHHHHHHHHhCCCcch------------hhcccccHHHHHHHcCcHHHHHHHHHcCCccc--ccccCcch
Confidence            57899999999999999999998887            99999999999999999999999999999864  444 4444


Q ss_pred             HHH
Q 042183          152 PLC  154 (179)
Q Consensus       152 pl~  154 (179)
                      +++
T Consensus       105 C~Y  107 (516)
T KOG0511|consen  105 CHY  107 (516)
T ss_pred             hhh
Confidence            443

>KOG0783 consensus Uncharacterized conserved protein, contains ankyrin and BTB/POZ domains [Function unknown]

Probab=98.48  E-value=8.5e-08  Score=77.77  Aligned_cols=68  Identities=18%  Similarity=0.121  Sum_probs=60.7

Q ss_pred             HHhccCCCCcHHHHHHHcCCHHHHHHHHhcCCCCCCCCCCCCCCHHHHHHHhcCCHHHHHHHHhcCCCC
Q 042183          108 IRMMNKEKHTALHEAVFHKIVDVVKILTREDLDYPYSANNYNKTPLCMVAEYEHSSHMVVAILKNCTSV  176 (179)
Q Consensus       108 ~~~~~~~g~t~l~~A~~~g~~~~~~~Ll~~~~~~~~~~~~~g~tpl~~A~~~~~~~~~~~~Ll~~g~~~  176 (179)
                      .+++|..|.|+||.|+..+..+++++|+++|.++.-.--..|+||||-|.. +|+.+|+-.|+.+|+..
T Consensus        45 anikD~~GR~alH~~~S~~k~~~l~wLlqhGidv~vqD~ESG~taLHRaiy-yG~idca~lLL~~g~SL  112 (1267)
T KOG0783|consen   45 ANIKDRYGRTALHIAVSENKNSFLRWLLQHGIDVFVQDEESGYTALHRAIY-YGNIDCASLLLSKGRSL  112 (1267)
T ss_pred             hhHHHhhccceeeeeeccchhHHHHHHHhcCceeeeccccccchHhhHhhh-hchHHHHHHHHhcCCce
Confidence            466899999999999999999999999999999863333479999999999 99999999999999654

>KOG0521 consensus Putative GTPase activating proteins (GAPs) [Signal transduction mechanisms]

Probab=98.43  E-value=2.9e-07  Score=75.99  Aligned_cols=88  Identities=22%  Similarity=0.282  Sum_probs=79.1

Q ss_pred             CCCCcHHHHHHHHcCCHHHHHHHHHhhcccCCchhhhhhHHHHhccCCCCcHHHHHHHcCCHHHHHHHHhcCCCCCCCCC
Q 042183           67 AKGDSRSLLVAAKFGHCDIVSVLIERAKLLQHEDEELESGMIRMMNKEKHTALHEAVFHKIVDVVKILTREDLDYPYSAN  146 (179)
Q Consensus        67 ~~g~t~~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~~~~~~~~~~~~g~t~l~~A~~~g~~~~~~~Ll~~~~~~~~~~~  146 (179)
                      ..|.+ +||.|+..|..-+.++|+++|++.+.            .|..|.+|+|.+...|+...+..|+++|++.. ..+
T Consensus       654 ~~~~s-~lh~a~~~~~~~~~e~ll~~ga~vn~------------~d~~g~~plh~~~~~g~~~~~~~ll~~~a~~~-a~~  719 (785)
T KOG0521|consen  654 CIGCS-LLHVAVGTGDSGAVELLLQNGADVNA------------LDSKGRTPLHHATASGHTSIACLLLKRGADPN-AFD  719 (785)
T ss_pred             hcccc-hhhhhhccchHHHHHHHHhcCCcchh------------hhccCCCcchhhhhhcccchhhhhcccccccc-ccC
Confidence            46788 99999999999999999999998776            99999999999999999999999999999976 899


Q ss_pred             CCCCCHHHHHHHhcCCHHHHHHH
Q 042183          147 NYNKTPLCMVAEYEHSSHMVVAI  169 (179)
Q Consensus       147 ~~g~tpl~~A~~~~~~~~~~~~L  169 (179)
                      ..|.+|+++|.. ..+-+++-++
T Consensus       720 ~~~~~~l~~a~~-~~~~d~~~l~  741 (785)
T KOG0521|consen  720 PDGKLPLDIAME-AANADIVLLL  741 (785)
T ss_pred             ccCcchhhHHhh-hccccHHHHH
Confidence            999999999988 6666665544

>KOG0511 consensus Ankyrin repeat protein [General function prediction only]

Probab=98.43  E-value=8.6e-07  Score=66.17  Aligned_cols=60  Identities=23%  Similarity=0.354  Sum_probs=55.3

Q ss_pred             HHHHHHHHcCChHHHHHHHHHHHHhhCcccccccCCCCCcHHHHHHHHcCCHHHHHHHHHhhcccCC
Q 042183           32 PNLFKAAAAGNLEPFKDMAREEILEICPSLLLQVNAKGDSRSLLVAAKFGHCDIVSVLIERAKLLQH   98 (179)
Q Consensus        32 ~~l~~A~~~g~~~~~~~ll~~~~~~~~~~~~~~~~~~g~t~~L~~A~~~g~~~~v~~ll~~~~~~~~   98 (179)
                      -.|..||+.|+++.|++|++      .+..+|..|....+ ||.+|+.-||...+++|+++|+-...
T Consensus        38 ~elceacR~GD~d~v~~LVe------tgvnVN~vD~fD~s-pL~lAsLcGHe~vvklLLenGAiC~r   97 (516)
T KOG0511|consen   38 GELCEACRAGDVDRVRYLVE------TGVNVNAVDRFDSS-PLYLASLCGHEDVVKLLLENGAICSR   97 (516)
T ss_pred             HHHHHHhhcccHHHHHHHHH------hCCCcchhhccccc-HHHHHHHcCcHHHHHHHHHcCCcccc
Confidence            45999999999999999998      67788999999999 99999999999999999999987654

>KOG0782 consensus Predicted diacylglycerol kinase [Signal transduction mechanisms]

Probab=98.41  E-value=7.6e-07  Score=69.71  Aligned_cols=88  Identities=23%  Similarity=0.208  Sum_probs=77.2

Q ss_pred             HHHHHHHHcCChHHHHHHHHHHHHhhCc-ccccccCCCCCcHHHHHHHHcCCHHHHHHHHHhhcccCCchhhhhhHHHHh
Q 042183           32 PNLFKAAAAGNLEPFKDMAREEILEICP-SLLLQVNAKGDSRSLLVAAKFGHCDIVSVLIERAKLLQHEDEELESGMIRM  110 (179)
Q Consensus        32 ~~l~~A~~~g~~~~~~~ll~~~~~~~~~-~~~~~~~~~g~t~~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~~~~~~~~  110 (179)
                      +-||+|++.|+.++|+++++     ..| ..++..|..|+| +||.|+..++..+..+|++.|+..-.            
T Consensus       901 sllh~a~~tg~~eivkyild-----h~p~elld~~de~get-~lhkaa~~~~r~vc~~lvdagasl~k------------  962 (1004)
T KOG0782|consen  901 SLLHYAAKTGNGEIVKYILD-----HGPSELLDMADETGET-ALHKAACQRNRAVCQLLVDAGASLRK------------  962 (1004)
T ss_pred             hHHHHHHhcCChHHHHHHHh-----cCCHHHHHHHhhhhhH-HHHHHHHhcchHHHHHHHhcchhhee------------
Confidence            55999999999999999987     333 356678899999 99999999999999999999986655            


Q ss_pred             ccCCCCcHHHHHHHcCCHHHHHHHHhc
Q 042183          111 MNKEKHTALHEAVFHKIVDVVKILTRE  137 (179)
Q Consensus       111 ~~~~g~t~l~~A~~~g~~~~~~~Ll~~  137 (179)
                      .|..|.||-..|-+.|..++..||-..
T Consensus       963 td~kg~tp~eraqqa~d~dlaayle~r  989 (1004)
T KOG0782|consen  963 TDSKGKTPQERAQQAGDPDLAAYLESR  989 (1004)
T ss_pred             cccCCCChHHHHHhcCCchHHHHHhhh
Confidence            899999999999999999999998653

>KOG0520 consensus Uncharacterized conserved protein, contains IPT/TIG domain [Function unknown]

Probab=98.35  E-value=7e-07  Score=73.99  Aligned_cols=98  Identities=12%  Similarity=0.047  Sum_probs=55.3

Q ss_pred             ccccCCCCCcHHHHHHHHcCCHHHHHHHHHh-hcccCCchhhhhhHHHHhccCCCCcHHHHHHHcCCHHHHHHHHhc-CC
Q 042183           62 LLQVNAKGDSRSLLVAAKFGHCDIVSVLIER-AKLLQHEDEELESGMIRMMNKEKHTALHEAVFHKIVDVVKILTRE-DL  139 (179)
Q Consensus        62 ~~~~~~~g~t~~L~~A~~~g~~~~v~~ll~~-~~~~~~~~~~~~~~~~~~~~~~g~t~l~~A~~~g~~~~~~~Ll~~-~~  139 (179)
                      .......|.+ .+|+++..+....++.+++. +.....            .+.+|.-.+|+ |..++.++.-+|+.. |.
T Consensus       567 ~~~~~~r~~l-llhL~a~~lyawLie~~~e~~~~~~~e------------ld~d~qgV~hf-ca~lg~ewA~ll~~~~~~  632 (975)
T KOG0520|consen  567 SSSVNFRDML-LLHLLAELLYAWLIEKVIEWAGSGDLE------------LDRDGQGVIHF-CAALGYEWAFLPISADGV  632 (975)
T ss_pred             cccCCCcchH-HHHHHHHHhHHHHHHHHhcccccCchh------------hcccCCChhhH-hhhcCCceeEEEEeeccc
Confidence            3445667888 89999999888888888876 433322            44444444555 333334443333322 22


Q ss_pred             CCCCCCCCCCCCHHHHHHHhcCCHHHHHHHHhcCCC
Q 042183          140 DYPYSANNYNKTPLCMVAEYEHSSHMVVAILKNCTS  175 (179)
Q Consensus       140 ~~~~~~~~~g~tpl~~A~~~~~~~~~~~~Ll~~g~~  175 (179)
                      .+. .+|..|+||||+|+. .|+..++..|+..|++
T Consensus       633 ai~-i~D~~G~tpL~wAa~-~G~e~l~a~l~~lga~  666 (975)
T KOG0520|consen  633 AID-IRDRNGWTPLHWAAF-RGREKLVASLIELGAD  666 (975)
T ss_pred             ccc-cccCCCCcccchHhh-cCHHHHHHHHHHhccc
Confidence            322 555555555555555 5555555555555543

>KOG2384 consensus Major histocompatibility complex protein BAT4, contains G-patch and ankyrin domains [General function prediction only]

Probab=98.34  E-value=1.1e-06  Score=59.75  Aligned_cols=64  Identities=14%  Similarity=0.063  Sum_probs=58.3

Q ss_pred             HHHhccCCCCcHHHHHHHcCCHHHHHHHHhcC-CCCCCCCCCCCCCHHHHHHHhcCCHHHHHHHHhc
Q 042183          107 MIRMMNKEKHTALHEAVFHKIVDVVKILTRED-LDYPYSANNYNKTPLCMVAEYEHSSHMVVAILKN  172 (179)
Q Consensus       107 ~~~~~~~~g~t~l~~A~~~g~~~~~~~Ll~~~-~~~~~~~~~~g~tpl~~A~~~~~~~~~~~~Ll~~  172 (179)
                      .++.+|..||||++.|+..|..+.+.||+.+| +.+. ..|..+.+++.+|-. .|..+++..|.+.
T Consensus         4 ~in~rD~fgWTalmcaa~eg~~eavsyllgrg~a~vg-v~d~ssldaaqlaek-~g~~~fvh~lfe~   68 (223)
T KOG2384|consen    4 NINARDAFGWTALMCAAMEGSNEAVSYLLGRGVAFVG-VTDESSLDAAQLAEK-GGAQAFVHSLFEN   68 (223)
T ss_pred             CccchhhhcchHHHHHhhhcchhHHHHHhccCccccc-ccccccchHHHHHHh-cChHHHHHHHHHH
Confidence            45669999999999999999999999999999 5554 899999999999999 9999999999775

>KOG2384 consensus Major histocompatibility complex protein BAT4, contains G-patch and ankyrin domains [General function prediction only]

Probab=98.34  E-value=1.5e-06  Score=59.02  Aligned_cols=68  Identities=22%  Similarity=0.162  Sum_probs=60.4

Q ss_pred             ccccccCCCCCcHHHHHHHHcCCHHHHHHHHHhh-cccCCchhhhhhHHHHhccCCCCcHHHHHHHcCCHHHHHHHHhcC
Q 042183           60 SLLLQVNAKGDSRSLLVAAKFGHCDIVSVLIERA-KLLQHEDEELESGMIRMMNKEKHTALHEAVFHKIVDVVKILTRED  138 (179)
Q Consensus        60 ~~~~~~~~~g~t~~L~~A~~~g~~~~v~~ll~~~-~~~~~~~~~~~~~~~~~~~~~g~t~l~~A~~~g~~~~~~~Ll~~~  138 (179)
                      ..+|.+|..|+| +|++|+..|.-+.+.+|+.+| +.+..            .|..|.+++.+|-..|+.+.+..|.+..
T Consensus         3 ~~in~rD~fgWT-almcaa~eg~~eavsyllgrg~a~vgv------------~d~ssldaaqlaek~g~~~fvh~lfe~~   69 (223)
T KOG2384|consen    3 GNINARDAFGWT-ALMCAAMEGSNEAVSYLLGRGVAFVGV------------TDESSLDAAQLAEKGGAQAFVHSLFEND   69 (223)
T ss_pred             CCccchhhhcch-HHHHHhhhcchhHHHHHhccCcccccc------------cccccchHHHHHHhcChHHHHHHHHHHh
Confidence            467889999999 999999999999999999999 55444            8999999999999999999999998874


Q ss_pred             CC
Q 042183          139 LD  140 (179)
Q Consensus       139 ~~  140 (179)
                      .+
T Consensus        70 ~e   71 (223)
T KOG2384|consen   70 RE   71 (223)
T ss_pred             cc
Confidence            43

>KOG0520 consensus Uncharacterized conserved protein, contains IPT/TIG domain [Function unknown]

Probab=98.22  E-value=1.3e-06  Score=72.39  Aligned_cols=121  Identities=14%  Similarity=0.018  Sum_probs=85.8

Q ss_pred             HHHHHHHHcCChHHHHHHHHHHHHhhCcccccccCCCCCcHHHHHHHHcCCHHHHHHHH-HhhcccCCchhhhhhHHHHh
Q 042183           32 PNLFKAAAAGNLEPFKDMAREEILEICPSLLLQVNAKGDSRSLLVAAKFGHCDIVSVLI-ERAKLLQHEDEELESGMIRM  110 (179)
Q Consensus        32 ~~l~~A~~~g~~~~~~~ll~~~~~~~~~~~~~~~~~~g~t~~L~~A~~~g~~~~v~~ll-~~~~~~~~~~~~~~~~~~~~  110 (179)
                      +-+|.++..+..-.+..+++ |    ........|.+|.- .+|+++ .++.++.-++. -.+...+            +
T Consensus       576 lllhL~a~~lyawLie~~~e-~----~~~~~~eld~d~qg-V~hfca-~lg~ewA~ll~~~~~~ai~------------i  636 (975)
T KOG0520|consen  576 LLLHLLAELLYAWLIEKVIE-W----AGSGDLELDRDGQG-VIHFCA-ALGYEWAFLPISADGVAID------------I  636 (975)
T ss_pred             HHHHHHHHHhHHHHHHHHhc-c----cccCchhhcccCCC-hhhHhh-hcCCceeEEEEeecccccc------------c
Confidence            45888888888888877775 2    12233344555555 777744 44555444443 3444443            4


Q ss_pred             ccCCCCcHHHHHHHcCCHHHHHHHHhcCCCCCCC-----CCCCCCCHHHHHHHhcCCHHHHHHHHhc
Q 042183          111 MNKEKHTALHEAVFHKIVDVVKILTREDLDYPYS-----ANNYNKTPLCMVAEYEHSSHMVVAILKN  172 (179)
Q Consensus       111 ~~~~g~t~l~~A~~~g~~~~~~~Ll~~~~~~~~~-----~~~~g~tpl~~A~~~~~~~~~~~~Ll~~  172 (179)
                      +|..||||||+|+..|+..++..|++.|++....     ....|.|+-.+|.. +|+..+..+|-+.
T Consensus       637 ~D~~G~tpL~wAa~~G~e~l~a~l~~lga~~~~~tdps~~~p~g~ta~~la~s-~g~~gia~~lse~  702 (975)
T KOG0520|consen  637 RDRNGWTPLHWAAFRGREKLVASLIELGADPGAVTDPSPETPGGKTAADLARA-NGHKGIAGYLSEK  702 (975)
T ss_pred             ccCCCCcccchHhhcCHHHHHHHHHHhccccccccCCCCCCCCCCchhhhhhc-ccccchHHHHhhh
Confidence            9999999999999999999999999877654322     33468889999999 9999999888665

>KOG0521 consensus Putative GTPase activating proteins (GAPs) [Signal transduction mechanisms]

Probab=97.75  E-value=3.3e-05  Score=64.20  Aligned_cols=85  Identities=20%  Similarity=0.231  Sum_probs=75.9

Q ss_pred             CHHHHHHHHcCChHHHHHHHHHHHHhhCcccccccCCCCCcHHHHHHHHcCCHHHHHHHHHhhcccCCchhhhhhHHHHh
Q 042183           31 DPNLFKAAAAGNLEPFKDMAREEILEICPSLLLQVNAKGDSRSLLVAAKFGHCDIVSVLIERAKLLQHEDEELESGMIRM  110 (179)
Q Consensus        31 ~~~l~~A~~~g~~~~~~~ll~~~~~~~~~~~~~~~~~~g~t~~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~~~~~~~~  110 (179)
                      -+.||.|+..|..-.+..|++      .++.++.+|..|.+ |||.+...|+...+..++++++.++.            
T Consensus       657 ~s~lh~a~~~~~~~~~e~ll~------~ga~vn~~d~~g~~-plh~~~~~g~~~~~~~ll~~~a~~~a------------  717 (785)
T KOG0521|consen  657 CSLLHVAVGTGDSGAVELLLQ------NGADVNALDSKGRT-PLHHATASGHTSIACLLLKRGADPNA------------  717 (785)
T ss_pred             cchhhhhhccchHHHHHHHHh------cCCcchhhhccCCC-cchhhhhhcccchhhhhccccccccc------------
Confidence            367999999999999988887      77789999999999 99999999999999999999998887            


Q ss_pred             ccCCCCcHHHHHHHcCCHHHHHHH
Q 042183          111 MNKEKHTALHEAVFHKIVDVVKIL  134 (179)
Q Consensus       111 ~~~~g~t~l~~A~~~g~~~~~~~L  134 (179)
                      .+.+|.+|+++|....+.+++-++
T Consensus       718 ~~~~~~~~l~~a~~~~~~d~~~l~  741 (785)
T KOG0521|consen  718 FDPDGKLPLDIAMEAANADIVLLL  741 (785)
T ss_pred             cCccCcchhhHHhhhccccHHHHH
Confidence            999999999999888776665544

>smart00248 ANK ankyrin repeats

Probab=97.57  E-value=0.0002  Score=32.72  Aligned_cols=27  Identities=26%  Similarity=0.444  Sum_probs=14.0

Q ss_pred             CCCHHHHHHHhcCCHHHHHHHHhcCCCC
Q 042183          149 NKTPLCMVAEYEHSSHMVVAILKNCTSV  176 (179)
Q Consensus       149 g~tpl~~A~~~~~~~~~~~~Ll~~g~~~  176 (179)
                      |.||+++|+. .++.+++++|++.|.++
T Consensus         2 ~~~~l~~~~~-~~~~~~~~~ll~~~~~~   28 (30)
T smart00248        2 GRTPLHLAAE-NGNLEVVKLLLDKGADI   28 (30)
T ss_pred             CCCHHHHHHH-cCCHHHHHHHHHcCCCC
Confidence            4455555555 55555555555555443

Ankyrin repeats are about 33 amino acids long and occur in at least four consecutive copies. They are involved in protein-protein interactions. The core of the repeat seems to be an helix-loop-helix structure.

>smart00248 ANK ankyrin repeats

Probab=97.49  E-value=0.00029  Score=32.17  Aligned_cols=28  Identities=32%  Similarity=0.381  Sum_probs=25.0

Q ss_pred             CCCcHHHHHHHcCCHHHHHHHHhcCCCC
Q 042183          114 EKHTALHEAVFHKIVDVVKILTREDLDY  141 (179)
Q Consensus       114 ~g~t~l~~A~~~g~~~~~~~Ll~~~~~~  141 (179)
                      .|.||+|+|+..++.+++++|++.+.++
T Consensus         1 ~~~~~l~~~~~~~~~~~~~~ll~~~~~~   28 (30)
T smart00248        1 DGRTPLHLAAENGNLEVVKLLLDKGADI   28 (30)
T ss_pred             CCCCHHHHHHHcCCHHHHHHHHHcCCCC
Confidence            3789999999999999999999987764

Ankyrin repeats are about 33 amino acids long and occur in at least four consecutive copies. They are involved in protein-protein interactions. The core of the repeat seems to be an helix-loop-helix structure.

>KOG3609 consensus Receptor-activated Ca2+-permeable cation channels (STRPC family) [Inorganic ion transport and metabolism; Signal transduction mechanisms]

Probab=97.44  E-value=0.0003  Score=57.84  Aligned_cols=95  Identities=18%  Similarity=0.086  Sum_probs=69.7

Q ss_pred             HHHHHHHHcCChHHHHHHHHHHHHhhCcccccccCCCCCcHHHHHHHHcCCHHHHHHHHHhhcccCCchhhhhhHHHHhc
Q 042183           32 PNLFKAAAAGNLEPFKDMAREEILEICPSLLLQVNAKGDSRSLLVAAKFGHCDIVSVLIERAKLLQHEDEELESGMIRMM  111 (179)
Q Consensus        32 ~~l~~A~~~g~~~~~~~ll~~~~~~~~~~~~~~~~~~g~t~~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~~~~~~~~~  111 (179)
                      ..|+.|+.+.+.+....|++      .+..+       .. +|.+|...|..++|+.++.+.........  ....-...
T Consensus        64 ~al~iai~nenle~~eLLl~------~~~~~-------gd-ALL~aI~~~~v~~VE~ll~~~~~~~~~~~--~~d~~~~~  127 (822)
T KOG3609|consen   64 LALHIAIDNENLELQELLLD------TSSEE-------GD-ALLLAIAVGSVPLVELLLVHFVDAPYLER--SGDANSPH  127 (822)
T ss_pred             hceecccccccHHHHHHHhc------Ccccc-------ch-HHHHHHHHHHHHHHHHHHhcccccchhcc--ccccCccc
Confidence            45899999999999988876      22221       33 89999999999999999998654432111  00000112


Q ss_pred             cCCCCcHHHHHHHcCCHHHHHHHHhcCCCCC
Q 042183          112 NKEKHTALHEAVFHKIVDVVKILTREDLDYP  142 (179)
Q Consensus       112 ~~~g~t~l~~A~~~g~~~~~~~Ll~~~~~~~  142 (179)
                      -.-+.||+..||..++.+|++.|+++|+++.
T Consensus       128 ft~ditPliLAAh~NnyEil~~Ll~kg~~i~  158 (822)
T KOG3609|consen  128 FTPDITPLMLAAHLNNFEILQCLLTRGHCIP  158 (822)
T ss_pred             CCCCccHHHHHHHhcchHHHHHHHHcCCCCC
Confidence            2347899999999999999999999998865

>KOG2505 consensus Ankyrin repeat protein [General function prediction only]

Probab=97.41  E-value=0.00025  Score=55.11  Aligned_cols=75  Identities=19%  Similarity=0.141  Sum_probs=53.6

Q ss_pred             HHHHHHHHHhhcccCCchhhhhhHHHHhccCCCCcHHHHHHHcCCHHHHHHHHhcCCCCCCCCCCCCCCHHHHHHHhcCC
Q 042183           83 CDIVSVLIERAKLLQHEDEELESGMIRMMNKEKHTALHEAVFHKIVDVVKILTREDLDYPYSANNYNKTPLCMVAEYEHS  162 (179)
Q Consensus        83 ~~~v~~ll~~~~~~~~~~~~~~~~~~~~~~~~g~t~l~~A~~~g~~~~~~~Ll~~~~~~~~~~~~~g~tpl~~A~~~~~~  162 (179)
                      ...+++|.+++...+....      ....+.--.|+||+|+.+|..+|+.+||+.|+|.. .+|..|.||+.++.. ...
T Consensus       404 p~~ie~lken~lsgnf~~~------pe~~~~ltsT~LH~aa~qg~~k~v~~~Leeg~Dp~-~kd~~Grtpy~ls~n-kdV  475 (591)
T KOG2505|consen  404 PDSIEALKENLLSGNFDVT------PEANDYLTSTFLHYAAAQGARKCVKYFLEEGCDPS-TKDGAGRTPYSLSAN-KDV  475 (591)
T ss_pred             hhHHHHHHhcCCccccccc------ccccccccchHHHHHHhcchHHHHHHHHHhcCCch-hcccCCCCccccccc-HHH
Confidence            4566777776655433110      01122335689999999999999999999999976 899999999998876 443


Q ss_pred             HHH
Q 042183          163 SHM  165 (179)
Q Consensus       163 ~~~  165 (179)
                      ..+
T Consensus       476 k~~  478 (591)
T KOG2505|consen  476 KSI  478 (591)
T ss_pred             HHH
Confidence            333

>PF06128 Shigella_OspC: Shigella flexneri OspC protein; InterPro: IPR010366 This family consists of the Shigella flexneri specific protein OspC

Probab=96.98  E-value=0.0095  Score=42.15  Aligned_cols=118  Identities=15%  Similarity=0.189  Sum_probs=79.0

Q ss_pred             HHHHHHcCChHHHHHHHHHHHHhhCcccccccCCCCCcHHHHHHHHcCCHHHHHHHHHhhcccCCchhhhhhHHHHhccC
Q 042183           34 LFKAAAAGNLEPFKDMAREEILEICPSLLLQVNAKGDSRSLLVAAKFGHCDIVSVLIERAKLLQHEDEELESGMIRMMNK  113 (179)
Q Consensus        34 l~~A~~~g~~~~~~~ll~~~~~~~~~~~~~~~~~~g~t~~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~~~~~~~~~~~  113 (179)
                      |-.|+..-+.+.+..++.           +.  ....+ ++-+|..++..+++.+|+++..-....       ...+  .
T Consensus       157 ledAV~AsN~~~i~~~Vt-----------dK--kdA~~-Am~~si~~~K~dva~~lls~f~ft~~d-------v~~~--~  213 (284)
T PF06128_consen  157 LEDAVKASNYEEISNLVT-----------DK--KDAHQ-AMWLSIGNAKEDVALYLLSKFNFTKQD-------VASM--E  213 (284)
T ss_pred             HHHHHhhcCHHHHHHHhc-----------ch--HHHHH-HHHHHhcccHHHHHHHHHhhcceecch-------hhhc--C
Confidence            667888888887765554           11  12345 888889888899999999876433220       0111  1


Q ss_pred             CCCcHHHHHHH--cCCHHHHHHHHhcCC-CCC--CCCCCCCCCHHHHHHHhcCCHHHHHHHHhcCCC
Q 042183          114 EKHTALHEAVF--HKIVDVVKILTREDL-DYP--YSANNYNKTPLCMVAEYEHSSHMVVAILKNCTS  175 (179)
Q Consensus       114 ~g~t~l~~A~~--~g~~~~~~~Ll~~~~-~~~--~~~~~~g~tpl~~A~~~~~~~~~~~~Ll~~g~~  175 (179)
                      .+..-+.++-.  .-...++++++.+|- +++  ..+-..|.|.|+-|+. ++..+++.+|++.|+-
T Consensus       214 ~~~ydieY~LS~h~a~~kvL~~Fi~~Glv~vN~~F~~~NSGdtMLDNA~K-y~~~emi~~Llk~GA~  279 (284)
T PF06128_consen  214 KELYDIEYLLSEHSASYKVLEYFINRGLVDVNKKFQKVNSGDTMLDNAMK-YKNSEMIAFLLKYGAI  279 (284)
T ss_pred             cchhhHHHHHhhcCCcHHHHHHHHhccccccchhhhccCCcchHHHhHHh-cCcHHHHHHHHHcCcc
Confidence            12223333322  234678899998873 332  2355679999999999 9999999999999973

The function of this family is unknown but it is thought that Osp proteins may be involved in postinvasion events related to virulence. Since bacterial pathogens adapt to multiple environments during the course of infecting a host, it has been proposed that Shigella evolved a mechanism to take advantage of a unique intracellular cue, which is mediated through MxiE, to express proteins when the organism reaches the eukaryotic cytosol [].

>KOG2505 consensus Ankyrin repeat protein [General function prediction only]

Probab=96.73  E-value=0.0025  Score=49.82  Aligned_cols=51  Identities=20%  Similarity=0.094  Sum_probs=42.0

Q ss_pred             CCcHHHHHHHHcCCHHHHHHHHHhhcccCCchhhhhhHHHHhccCCCCcHHHHHHHcCCHHHHHHHH
Q 042183           69 GDSRSLLVAAKFGHCDIVSVLIERAKLLQHEDEELESGMIRMMNKEKHTALHEAVFHKIVDVVKILT  135 (179)
Q Consensus        69 g~t~~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~~~~~~~~~~~~g~t~l~~A~~~g~~~~~~~Ll  135 (179)
                      -.| +||+|+..|..++|.+||..|+++..            +|..|.||...+.   +.++-..++
T Consensus       430 tsT-~LH~aa~qg~~k~v~~~Leeg~Dp~~------------kd~~Grtpy~ls~---nkdVk~~F~  480 (591)
T KOG2505|consen  430 TST-FLHYAAAQGARKCVKYFLEEGCDPST------------KDGAGRTPYSLSA---NKDVKSIFI  480 (591)
T ss_pred             cch-HHHHHHhcchHHHHHHHHHhcCCchh------------cccCCCCcccccc---cHHHHHHHH
Confidence            345 99999999999999999999988877            9999999999887   444444443

>PF03158 DUF249: Multigene family 530 protein; InterPro: IPR004858 This entry represents multigene family 530 proteins from African swine fever virus (ASFV) viruses

Probab=96.40  E-value=0.088  Score=36.16  Aligned_cols=121  Identities=12%  Similarity=0.053  Sum_probs=78.0

Q ss_pred             HHHHHHHcCChHHHHHHHHHHHHhhCcccccccCCCCCcHHHHHHHHcCCHHHHHHHHHhhcccCCchhh----------
Q 042183           33 NLFKAAAAGNLEPFKDMAREEILEICPSLLLQVNAKGDSRSLLVAAKFGHCDIVSVLIERAKLLQHEDEE----------  102 (179)
Q Consensus        33 ~l~~A~~~g~~~~~~~ll~~~~~~~~~~~~~~~~~~g~t~~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~----------  102 (179)
                      -|..|++.+-+.++++.-+  .+       ...-....+ .+-.||+..+.++|+|+-+.-.-.+.....          
T Consensus        49 Ll~HAVk~nmL~ILqkyke--~L-------~~~~~~~q~-LFElAC~~qkydiV~WI~qnL~i~~~~~iFdIA~~~kDls  118 (192)
T PF03158_consen   49 LLYHAVKYNMLSILQKYKE--DL-------ENERYLNQE-LFELACEEQKYDIVKWIGQNLHIYNPEDIFDIAFAKKDLS  118 (192)
T ss_pred             HHHHHHHcCcHHHHHHHHH--Hh-------hcchhHHHH-HHHHHHHHccccHHHHHhhccCCCCchhhhhhhhhccchh
Confidence            3667899999999988854  11       101123445 678899999999999996554333332221          


Q ss_pred             --hhhHH--HHh-ccCCCC-------cHHHHHHHcCCHHHHHHHHhcCCCCCCCCCCCCCCHHHHHHHhcCCHHHHHHHH
Q 042183          103 --LESGM--IRM-MNKEKH-------TALHEAVFHKIVDVVKILTREDLDYPYSANNYNKTPLCMVAEYEHSSHMVVAIL  170 (179)
Q Consensus       103 --~~~~~--~~~-~~~~g~-------t~l~~A~~~g~~~~~~~Ll~~~~~~~~~~~~~g~tpl~~A~~~~~~~~~~~~Ll  170 (179)
                        ..+-.  ++- .+..+.       .-|..|+..|...-+--.+++|.++.       .+.|..|+. +++..++.+++
T Consensus       119 LyslGY~l~~~~~~~~~~~d~~~ll~~hl~~a~~kgll~F~letlkygg~~~-------~~vls~Av~-ynhRkIL~yfi  190 (192)
T PF03158_consen  119 LYSLGYKLLFNRMMSEHNEDPTSLLTQHLEKAAAKGLLPFVLETLKYGGNVD-------IIVLSQAVK-YNHRKILDYFI  190 (192)
T ss_pred             HHHHHHHHHHhhcccccccCHHHHHHHHHHHHHHCCCHHHHHHHHHcCCccc-------HHHHHHHHH-hhHHHHHHHhh
Confidence              11111  110 111111       24678899999998888888887753       288999999 99999998887


Q ss_pred             h
Q 042183          171 K  171 (179)
Q Consensus       171 ~  171 (179)
                      .
T Consensus       191 ~  191 (192)
T PF03158_consen  191 R  191 (192)
T ss_pred             c
Confidence            4

These proteins may be involved in promoting survival of infected macrophages [].

>PF06128 Shigella_OspC: Shigella flexneri OspC protein; InterPro: IPR010366 This family consists of the Shigella flexneri specific protein OspC

Probab=95.96  E-value=0.046  Score=38.84  Aligned_cols=97  Identities=8%  Similarity=-0.017  Sum_probs=65.9

Q ss_pred             HHHHHHHHcCChHHHHHHHHHHHHhhCcccccccCCCCCcHHHHHHHHc--CCHHHHHHHHHhhcccCCchhhhhhHHHH
Q 042183           32 PNLFKAAAAGNLEPFKDMAREEILEICPSLLLQVNAKGDSRSLLVAAKF--GHCDIVSVLIERAKLLQHEDEELESGMIR  109 (179)
Q Consensus        32 ~~l~~A~~~g~~~~~~~ll~~~~~~~~~~~~~~~~~~g~t~~L~~A~~~--g~~~~v~~ll~~~~~~~~~~~~~~~~~~~  109 (179)
                      ..+..|+..+.-+++.+|+++|-..... .+.  -..+.. -+-|+...  .+..++++++.+|-.....       .. 
T Consensus       181 ~Am~~si~~~K~dva~~lls~f~ft~~d-v~~--~~~~~y-dieY~LS~h~a~~kvL~~Fi~~Glv~vN~-------~F-  248 (284)
T PF06128_consen  181 QAMWLSIGNAKEDVALYLLSKFNFTKQD-VAS--MEKELY-DIEYLLSEHSASYKVLEYFINRGLVDVNK-------KF-  248 (284)
T ss_pred             HHHHHHhcccHHHHHHHHHhhcceecch-hhh--cCcchh-hHHHHHhhcCCcHHHHHHHHhccccccch-------hh-
Confidence            5588899899999999999855432211 111  112333 45555543  4678999999988422110       11 


Q ss_pred             hccCCCCcHHHHHHHcCCHHHHHHHHhcCCC
Q 042183          110 MMNKEKHTALHEAVFHKIVDVVKILTREDLD  140 (179)
Q Consensus       110 ~~~~~g~t~l~~A~~~g~~~~~~~Ll~~~~~  140 (179)
                      .+-..|.|-|.-|..++..+++.+|+++|+.
T Consensus       249 ~~~NSGdtMLDNA~Ky~~~emi~~Llk~GA~  279 (284)
T PF06128_consen  249 QKVNSGDTMLDNAMKYKNSEMIAFLLKYGAI  279 (284)
T ss_pred             hccCCcchHHHhHHhcCcHHHHHHHHHcCcc
Confidence            1345799999999999999999999999985

The function of this family is unknown but it is thought that Osp proteins may be involved in postinvasion events related to virulence. Since bacterial pathogens adapt to multiple environments during the course of infecting a host, it has been proposed that Shigella evolved a mechanism to take advantage of a unique intracellular cue, which is mediated through MxiE, to express proteins when the organism reaches the eukaryotic cytosol [].

>PF11929 DUF3447: Domain of unknown function (DUF3447); InterPro: IPR020683 This entry represents the ankyrin repeat-containing domain

Probab=94.74  E-value=0.097  Score=30.63  Aligned_cols=46  Identities=17%  Similarity=0.254  Sum_probs=39.1

Q ss_pred             HHHHHHHcCCHHHHHHHHHhhcccCCchhhhhhHHHHhccCCCCcHHHHHHHcCCHHHHHHHHhc
Q 042183           73 SLLVAAKFGHCDIVSVLIERAKLLQHEDEELESGMIRMMNKEKHTALHEAVFHKIVDVVKILTRE  137 (179)
Q Consensus        73 ~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~~~~~~~~~~~~g~t~l~~A~~~g~~~~~~~Ll~~  137 (179)
                      .+..|+..|+.++++.+++.+.                .+   ...+..|+...+-+++++|++.
T Consensus         9 tl~~Ai~GGN~eII~~c~~~~~----------------~~---~~~l~~AI~~H~n~i~~~l~~~   54 (76)
T PF11929_consen    9 TLEYAIIGGNFEIINICLKKNK----------------PD---NDCLEYAIKSHNNEIADWLIEN   54 (76)
T ss_pred             HHHHHHhCCCHHHHHHHHHHhc----------------cH---HHHHHHHHHHhhHHHHHHHHHh
Confidence            5889999999999999997653                11   3579999999999999999986

These domains contain multiple repeats of a beta(2)-alpha(2) motif. The ankyrin repeat is one of the most common protein-protein interaction motifs in nature. Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].

>PF11929 DUF3447: Domain of unknown function (DUF3447); InterPro: IPR020683 This entry represents the ankyrin repeat-containing domain

Probab=93.51  E-value=0.22  Score=29.10  Aligned_cols=48  Identities=25%  Similarity=0.215  Sum_probs=38.5

Q ss_pred             HHHHHHHHcCChHHHHHHHHHHHHhhCcccccccCCCCCcHHHHHHHHcCCHHHHHHHHHhh
Q 042183           32 PNLFKAAAAGNLEPFKDMAREEILEICPSLLLQVNAKGDSRSLLVAAKFGHCDIVSVLIERA   93 (179)
Q Consensus        32 ~~l~~A~~~g~~~~~~~ll~~~~~~~~~~~~~~~~~~g~t~~L~~A~~~g~~~~v~~ll~~~   93 (179)
                      ..+..|+..|+.|+++.+++.      .    ..+   .. .+..|+...+-+++++|++..
T Consensus         8 ~tl~~Ai~GGN~eII~~c~~~------~----~~~---~~-~l~~AI~~H~n~i~~~l~~~y   55 (76)
T PF11929_consen    8 KTLEYAIIGGNFEIINICLKK------N----KPD---ND-CLEYAIKSHNNEIADWLIENY   55 (76)
T ss_pred             HHHHHHHhCCCHHHHHHHHHH------h----ccH---HH-HHHHHHHHhhHHHHHHHHHhc
Confidence            458899999999999988761      1    111   33 799999999999999999874

These domains contain multiple repeats of a beta(2)-alpha(2) motif. The ankyrin repeat is one of the most common protein-protein interaction motifs in nature. Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].

>PF03158 DUF249: Multigene family 530 protein; InterPro: IPR004858 This entry represents multigene family 530 proteins from African swine fever virus (ASFV) viruses

Probab=90.04  E-value=0.77  Score=31.69  Aligned_cols=45  Identities=20%  Similarity=0.110  Sum_probs=36.7

Q ss_pred             HHHHHHcCCHHHHHHHHHhhcccCCchhhhhhHHHHhccCCCCcHHHHHHHcCCHHHHHHHHh
Q 042183           74 LLVAAKFGHCDIVSVLIERAKLLQHEDEELESGMIRMMNKEKHTALHEAVFHKIVDVVKILTR  136 (179)
Q Consensus        74 L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~~~~~~~~~~~~g~t~l~~A~~~g~~~~~~~Ll~  136 (179)
                      |..|+..|-...+...+++|.+.+                  .++|..|+.++|-.++.+++.
T Consensus       147 l~~a~~kgll~F~letlkygg~~~------------------~~vls~Av~ynhRkIL~yfi~  191 (192)
T PF03158_consen  147 LEKAAAKGLLPFVLETLKYGGNVD------------------IIVLSQAVKYNHRKILDYFIR  191 (192)
T ss_pred             HHHHHHCCCHHHHHHHHHcCCccc------------------HHHHHHHHHhhHHHHHHHhhc
Confidence            567888888888888888876432                  279999999999999999875

These proteins may be involved in promoting survival of infected macrophages [].

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	179
3ljn_A	364	Hypothetical protein; ankyrin, structural genomics	2e-07
3ljn_A	364	Hypothetical protein; ankyrin, structural genomics	1e-05
3ljn_A	364	Hypothetical protein; ankyrin, structural genomics	2e-04
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	5e-07
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	1e-06
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	2e-06
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	2e-06
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	3e-06
3kea_A	285	K1L; tropism, ANK repeat, viral protein; 2.30A {Va	6e-07
3kea_A	285	K1L; tropism, ANK repeat, viral protein; 2.30A {Va	2e-04
3utm_A	351	Tankyrase-1; tankyrase, TNKS, ankryin repeat clust	9e-07
3utm_A	351	Tankyrase-1; tankyrase, TNKS, ankryin repeat clust	1e-04
3utm_A	351	Tankyrase-1; tankyrase, TNKS, ankryin repeat clust	1e-04
3utm_A	351	Tankyrase-1; tankyrase, TNKS, ankryin repeat clust	1e-04
3v30_A	172	DNA-binding protein rfxank; structural genomics co	9e-07
3v30_A	172	DNA-binding protein rfxank; structural genomics co	8e-06
2zgd_A	110	3 repeat synthetic ankyrin; ankyrin repeat, hydrox	1e-06
2zgd_A	110	3 repeat synthetic ankyrin; ankyrin repeat, hydrox	9e-05
2xai_A	261	ASB-9, ankyrin repeat and SOCS box protein 9; tran	1e-06
2xai_A	261	ASB-9, ankyrin repeat and SOCS box protein 9; tran	3e-05
2xai_A	261	ASB-9, ankyrin repeat and SOCS box protein 9; tran	4e-05
2fo1_E	373	LIN-12 protein; beta-barrel, protein-DNA complex,	2e-06
2fo1_E	373	LIN-12 protein; beta-barrel, protein-DNA complex,	6e-05
2fo1_E	373	LIN-12 protein; beta-barrel, protein-DNA complex,	9e-05
3v31_A	167	Ankyrin repeat family A protein 2; structural geno	2e-06
3v31_A	167	Ankyrin repeat family A protein 2; structural geno	2e-04
3d9h_A	285	CDNA FLJ77766, highly similar to HOMO sapiens anky	2e-06
3d9h_A	285	CDNA FLJ77766, highly similar to HOMO sapiens anky	3e-05
3d9h_A	285	CDNA FLJ77766, highly similar to HOMO sapiens anky	4e-05
3d9h_A	285	CDNA FLJ77766, highly similar to HOMO sapiens anky	7e-05
1wdy_A	285	2-5A-dependent ribonuclease; hydrolase, RNA-bindin	3e-06
1wdy_A	285	2-5A-dependent ribonuclease; hydrolase, RNA-bindin	3e-05
1wdy_A	285	2-5A-dependent ribonuclease; hydrolase, RNA-bindin	4e-05
1wdy_A	285	2-5A-dependent ribonuclease; hydrolase, RNA-bindin	3e-04
2pnn_A	273	Transient receptor potential cation channel subfa	7e-06
2pnn_A	273	Transient receptor potential cation channel subfa	4e-04
3hra_A	201	Ankyrin repeat family protein; structural protein;	7e-06
1ikn_D	236	Protein (I-kappa-B-alpha), protein (NF-kappa-B P50	8e-06
3c5r_A	137	BARD-1, BRCA1-associated ring domain protein 1; an	1e-05
3c5r_A	137	BARD-1, BRCA1-associated ring domain protein 1; an	5e-04
3twr_A	165	Tankyrase-2; ankyrin repeat, protein-protein inter	1e-05
3twr_A	165	Tankyrase-2; ankyrin repeat, protein-protein inter	3e-04
1awc_B	153	Protein (GA binding protein beta 1); complex (tran	1e-05
1awc_B	153	Protein (GA binding protein beta 1); complex (tran	9e-05
3f6q_A	179	Integrin-linked protein kinase; ILK, integrin-link	1e-05
3f6q_A	179	Integrin-linked protein kinase; ILK, integrin-link	2e-05
3deo_A	183	Signal recognition particle 43 kDa protein; chloro	1e-05
3deo_A	183	Signal recognition particle 43 kDa protein; chloro	8e-05
3ehr_A	222	Osteoclast-stimulating factor 1; beta barrel, heli	1e-05
3ehr_A	222	Osteoclast-stimulating factor 1; beta barrel, heli	8e-05
1oy3_D	282	Transcription factor inhibitor I-kappa-B-beta; pro	1e-05
1oy3_D	282	Transcription factor inhibitor I-kappa-B-beta; pro	4e-04
1oy3_D	282	Transcription factor inhibitor I-kappa-B-beta; pro	7e-04
3ui2_A	244	Signal recognition particle 43 kDa protein, chlor;	1e-05
3eu9_A	240	Huntingtin-interacting protein 14; epigenetics, an	1e-05
3eu9_A	240	Huntingtin-interacting protein 14; epigenetics, an	5e-05
1ycs_B	239	53BP2, P53BP2; ankyrin repeats, SH3, tumor suppres	1e-05
3jxi_A	260	Vanilloid receptor-related osmotically activated p	2e-05
1k1a_A	241	B-cell lymphoma 3-encoded protein; BCL-3, NF-kappa	2e-05
1k1a_A	241	B-cell lymphoma 3-encoded protein; BCL-3, NF-kappa	8e-05
1k1a_A	241	B-cell lymphoma 3-encoded protein; BCL-3, NF-kappa	4e-04
2f8y_A	223	Notch homolog 1, translocation-associated (drosoph	2e-05
2f8y_A	223	Notch homolog 1, translocation-associated (drosoph	2e-04
2f8y_A	223	Notch homolog 1, translocation-associated (drosoph	6e-04
1s70_B	299	130 kDa myosin-binding subunit of smooth muscle my	2e-05
1s70_B	299	130 kDa myosin-binding subunit of smooth muscle my	2e-04
2etb_A	256	Transient receptor potential cation channel subfam	3e-05
2etb_A	256	Transient receptor potential cation channel subfam	6e-05
2rfa_A	232	Transient receptor potential cation channel subfa	3e-05
2rfa_A	232	Transient receptor potential cation channel subfa	8e-04
1n0r_A	126	4ANK, 4 ankyrin repeats; structural protein; 1.50A	5e-05
1n0r_A	126	4ANK, 4 ankyrin repeats; structural protein; 1.50A	6e-05
3t8k_A	186	Uncharacterized protein; structural genomics, PSI-	5e-05
3t8k_A	186	Uncharacterized protein; structural genomics, PSI-	1e-04
3t8k_A	186	Uncharacterized protein; structural genomics, PSI-	3e-04
1bi7_B	156	P16INK4A, MTS1, multiple tumor suppressor; cyclin	5e-05
1ihb_A	162	P18-INK4C(INK6), cyclin-dependent kinase 6 inhibit	6e-05
3b7b_A	237	Euchromatic histone-lysine N-methyltransferase 1;	6e-05
3b7b_A	237	Euchromatic histone-lysine N-methyltransferase 1;	6e-05
2dzn_A	228	Probable 26S proteasome regulatory subunit P28; an	8e-05
1d9s_A	136	Cyclin-dependent kinase 4 inhibitor B; helix-turn-	8e-05
1d9s_A	136	Cyclin-dependent kinase 4 inhibitor B; helix-turn-	5e-04
2y1l_E	169	Darpin-8.4; hydrolase-inhibitor complex, DEVD darp	1e-04
2y1l_E	169	Darpin-8.4; hydrolase-inhibitor complex, DEVD darp	2e-04
2y1l_E	169	Darpin-8.4; hydrolase-inhibitor complex, DEVD darp	4e-04
2vge_A	229	RELA-associated inhibitor; iaspp, nucleus, apoptos	2e-04
1yyh_A	253	HN1;, notch 1, ankyrin domain; ankyrin repeats, ce	2e-04
1yyh_A	253	HN1;, notch 1, ankyrin domain; ankyrin repeats, ce	4e-04
1bd8_A	156	P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyr	2e-04
1bd8_A	156	P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyr	3e-04
3aji_A	231	26S proteasome non-ATPase regulatory subunit 10; g	2e-04
3aaa_C	123	Myotrophin, protein V-1; actin capping protein, ba	3e-04
1n0q_A	93	3ANK, 3 ankyrin repeats; structural protein; 1.26A	3e-04
2l6b_A	115	NR1C; ankyrin, consensus, repeat protein, ising mo	5e-04
2l6b_A	115	NR1C; ankyrin, consensus, repeat protein, ising mo	6e-04

>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major} Length = 364

 Score = 48.7 bits (117), Expect = 2e-07
 Identities = 9/113 (7%), Positives = 35/113 (30%), Gaps = 7/113 (6%)

Query: 55  LEICPSLLLQ---VNAKGDSRS--LLVAAKFGHCDIVSVLIERAKLLQHEDEELESGM-I 108
            ++    +     VN + +  +  L ++ +     +   L+++  +   +     +G  +
Sbjct: 224 EDVAMRFVEMGIDVNMEDNEHTVPLYLSVRAAMVLLTKELLQKTDVFLIQACPYHNGTTV 283

Query: 109 RMMNKEKHTALHEAVFHKIVDVVKILTREDLDYPYSANNYNKTPLCMVAEYEH 161
                     +  A      +V+++L  +  +    + N          +   
Sbjct: 284 LPDRVVWLDFVPAAADPSKQEVLQLLQEKLDE-VVRSLNTGAGGAVKRKKKAA 335

>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major} Length = 364

 Score = 43.3 bits (103), Expect = 1e-05
 Identities = 26/160 (16%), Positives = 58/160 (36%), Gaps = 31/160 (19%)

Query: 34  LFKAAAAGNLEPFKDMAREEILEICPSLLLQ----VNAKGDSRSLLVAAKFGHCDIVSVL 89
           L  A   G ++           +     L       +     + + +A      D+V  L
Sbjct: 57  LHLACKFGCVD---------TAK----YLASVGEVHSLWHGQKPIHLAVMANKTDLVVAL 103

Query: 90  IERAK---------LLQHEDEELESGMIRMMNKEKHTALHEAVF--HKIVDVVKILTRED 138
           +E AK         L + ++ E+      + + +  TALH  V    + ++++KIL +  
Sbjct: 104 VEGAKERGQMPESLLNECDEREVNEIGSHVKHCKGQTALHWCVGLGPEYLEMIKILVQLG 163

Query: 139 LDYPYSANNYNKTPLCMVAEYEHSSHMVVAILKNCTSVSH 178
              P + +  ++TPL    E+ +     + ++ +      
Sbjct: 164 AS-PTAKDKADETPLMRAMEFRNRE--ALDLMMDTVPSKS 200

>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major} Length = 364

 Score = 39.5 bits (93), Expect = 2e-04
 Identities = 21/101 (20%), Positives = 31/101 (30%), Gaps = 21/101 (20%)

Query: 65  VNAKGDSRS--LLVAAKFGHCDIVSVLIER-AKLLQHEDEELESGMIRMMNKEKHTALHE 121
                D     + VAA+ G  D V  LIE                   + N+   TALH 
Sbjct: 13  RIKSDDENMEKIHVAARKGQTDEVRRLIETGVS-------------PTIQNRFGCTALHL 59

Query: 122 AVFHKIVDVVKILTREDLDYPYSANNYN-KTPLCMVAEYEH 161
           A     VD  K L           + ++ + P+ +      
Sbjct: 60  ACKFGCVDTAKYLASVGEV----HSLWHGQKPIHLAVMANK 96

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437

 Score = 47.5 bits (114), Expect = 5e-07
 Identities = 26/122 (21%), Positives = 48/122 (39%), Gaps = 23/122 (18%)

Query: 61  LLLQ----VNAKGDSR--SLLVAAKFGHCDIVSVLIER-AKLLQHEDEELESGMIRMMNK 113
           +L++    V+A        L VA+ +G+  +V  L++  A              +    K
Sbjct: 296 VLIKHGVMVDATTRMGYTPLHVASHYGNIKLVKFLLQHQAD-------------VNAKTK 342

Query: 114 EKHTALHEAVFHKIVDVVKILTREDLDYPYSANNYNKTPLCMVAEYEHSSHMVVAILKNC 173
             ++ LH+A      D+V +L +     P   ++   TPL +     + S  V  +LK  
Sbjct: 343 LGYSPLHQAAQQGHTDIVTLLLKNGAS-PNEVSSDGTTPLAIAKRLGYIS--VTDVLKVV 399

Query: 174 TS 175
           T 
Sbjct: 400 TD 401

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437

 Score = 46.3 bits (111), Expect = 1e-06
 Identities = 37/144 (25%), Positives = 52/144 (36%), Gaps = 36/144 (25%)

Query: 34  LFKAAAAGNLEPFKDMAREEILEICPSLLLQ----VNAKGDSRS--LLVAAKFGHCDIVS 87
           L  AA AG+ E         + +     LLQ    VNAK       L  AA+ GH ++V 
Sbjct: 51  LHMAARAGHTE---------VAK----YLLQNKAKVNAKAKDDQTPLHCAARIGHTNMVK 97

Query: 88  VLIER-AKLLQHEDEELESGMIRMMNKEKHTALHEAVFHKIVDVVKILTREDLDYPYSAN 146
           +L+E  A                +     HT LH A     V+ V  L  ++        
Sbjct: 98  LLLENNAN-------------PNLATTAGHTPLHIAAREGHVETVLALLEKEAS-QACMT 143

Query: 147 NYNKTPLCMVAEYEHSSHMVVAIL 170
               TPL + A+Y      V  +L
Sbjct: 144 KKGFTPLHVAAKYGKVR--VAELL 165

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437

 Score = 45.9 bits (110), Expect = 2e-06
 Identities = 26/113 (23%), Positives = 45/113 (39%), Gaps = 20/113 (17%)

Query: 55  LEICPSLLLQ---VNAKGDSRS--LLVAAKFGHCDIVSVLIER-AKLLQHEDEELESGMI 108
           +E+  SLL      NA+       L +AA+ GH ++V++L+ + A               
Sbjct: 225 VEVARSLLQYGGSANAESVQGVTPLHLAAQEGHAEMVALLLSKQAN-------------G 271

Query: 109 RMMNKEKHTALHEAVFHKIVDVVKILTREDLDYPYSANNYNKTPLCMVAEYEH 161
            + NK   T LH       V V  +L +  +    +      TPL + + Y +
Sbjct: 272 NLGNKSGLTPLHLVAQEGHVPVADVLIKHGVM-VDATTRMGYTPLHVASHYGN 323

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437

 Score = 45.9 bits (110), Expect = 2e-06
 Identities = 31/135 (22%), Positives = 46/135 (34%), Gaps = 34/135 (25%)

Query: 34  LFKAAAAGNLEPFKDMAREEILEICPSLLLQ----VNAKGDSRS--LLVAAKFGHCDIVS 87
           L  AA  G +          + E    LLL+     NA G +    L VA    + DIV 
Sbjct: 150 LHVAAKYGKVR---------VAE----LLLERDAHPNAAGKNGLTPLHVAVHHNNLDIVK 196

Query: 88  VLIER-AKLLQHEDEELESGMIRMMNKEKHTALHEAVFHKIVDVVKILTREDLDYPYSAN 146
           +L+ R                        +T LH A     V+V + L +       + +
Sbjct: 197 LLLPRGGS-------------PHSPAWNGYTPLHIAAKQNQVEVARSLLQYGGS-ANAES 242

Query: 147 NYNKTPLCMVAEYEH 161
               TPL + A+  H
Sbjct: 243 VQGVTPLHLAAQEGH 257

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437

 Score = 45.2 bits (108), Expect = 3e-06
 Identities = 25/100 (25%), Positives = 36/100 (36%), Gaps = 17/100 (17%)

Query: 65  VNAKGDSRS--LLVAAKFGHCDIVSVLIER-AKLLQHEDEELESGMIRMMNKEKHTALHE 121
               G+S    L VA+  GH  IV  L++R A                + N +  T LH 
Sbjct: 7   GGGGGESGLTPLHVASFMGHLPIVKNLLQRGAS-------------PNVSNVKVETPLHM 53

Query: 122 AVFHKIVDVVKILTREDLDYPYSANNYNKTPLCMVAEYEH 161
           A      +V K L +       +    ++TPL   A   H
Sbjct: 54  AARAGHTEVAKYLLQNKAK-VNAKAKDDQTPLHCAARIGH 92

>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus} Length = 285

 Score = 47.1 bits (113), Expect = 6e-07
 Identities = 21/133 (15%), Positives = 38/133 (28%), Gaps = 31/133 (23%)

Query: 34  LFKAAAAGNLEPFKDMAREEILEICPSLLLQ----VNAKGDSRSLLVAAKFGHCDIVSVL 89
            + A A  N+          ++      LL      N   +   L  AA      IV +L
Sbjct: 35  SYYAIADNNVR---------LVC----TLLNAGALKNLLENEFPLHQAATLEDTKIVKIL 81

Query: 90  IER-AKLLQHEDEELESGMIRMMNKEKHTALHEAVFHKIVDVVKILTREDLDYPYSANNY 148
           +                      + + +TAL+ AV    +  VK+  +++    +     
Sbjct: 82  LFSGLD-------------DSQFDDKGNTALYYAVDSGNMQTVKLFVKKNWRLMFYGKTG 128

Query: 149 NKTPLCMVAEYEH 161
            KT          
Sbjct: 129 WKTSFYHAVMLND 141

>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus} Length = 285

 Score = 39.8 bits (94), Expect = 2e-04
 Identities = 21/154 (13%), Positives = 44/154 (28%), Gaps = 41/154 (26%)

Query: 20  DNNGEISQLQIDPNLFKAAAAGNLEPFKDMAREEILEICPSLLLQ----VNAK---GDSR 72
           D+ G  +       L+ A  +GN++          ++    L ++    +      G   
Sbjct: 92  DDKGNTA-------LYYAVDSGNMQ---------TVK----LFVKKNWRLMFYGKTGWKT 131

Query: 73  SLLVAAKFGHCDIVSVLIERAKLLQHEDEELESGMIRMMNKEKHTALHEAVFHKIVDVVK 132
           S   A       IVS  +                          + +H  + +  VD++ 
Sbjct: 132 SFYHAVMLNDVSIVSYFLSE-------------IPSTFDLAILLSCIHITIKNGHVDMMI 178

Query: 133 ILTREDLDYPYSANNYNKTPLCMVAEYEHSSHMV 166
           +L         + N+    P   +A       M+
Sbjct: 179 LLLDYMTS-TNTNNSLLFIPDIKLAIDNKDIEML 211

>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus} Length = 351

 Score = 46.7 bits (112), Expect = 9e-07
 Identities = 33/152 (21%), Positives = 53/152 (34%), Gaps = 36/152 (23%)

Query: 34  LFKAAAAGNLEPFKDMAREEILEICPSLLLQ----VNAKGDSRS--LLVAAKFGHCDIVS 87
           L  AA    +          I++    LLLQ    V+AK       L  A  +GH ++  
Sbjct: 62  LHLAAGYNRVR---------IVQ----LLLQHGADVHAKDKGGLVPLHNACSYGHYEVTE 108

Query: 88  VLIER-AKLLQHEDEELESGMIRMMNKEKHTALHEAVFHKIVDVVKILTREDLDYPYSAN 146
           +L++  A              +  M+  + T LHEA     V+V  +L     D P   N
Sbjct: 109 LLLKHGAC-------------VNAMDLWQFTPLHEAASKNRVEVCSLLLSHGAD-PTLVN 154

Query: 147 NYNKTPLCMVAEYEHSSHMVVAILKNCTSVSH 178
            + K+ + M    E      +       S+  
Sbjct: 155 CHGKSAVDMAPTPELRE--RLTYEFKGHSLLQ 184

>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus} Length = 351

 Score = 40.6 bits (96), Expect = 1e-04
 Identities = 21/100 (21%), Positives = 37/100 (37%), Gaps = 16/100 (16%)

Query: 65  VNAKGDSR--SLLVAAKFGHCDIVSVLIERAKLLQHEDEELESGM-IRMMNKEKHTALHE 121
               G+ +   LL AA+ G+ + +        LL          +     +  K T LH 
Sbjct: 17  AVLTGEYKKDELLEAARSGNEEKL------MALL------TPLNVNCHASDGRKSTPLHL 64

Query: 122 AVFHKIVDVVKILTREDLDYPYSANNYNKTPLCMVAEYEH 161
           A  +  V +V++L +   D  ++ +     PL     Y H
Sbjct: 65  AAGYNRVRIVQLLLQHGAD-VHAKDKGGLVPLHNACSYGH 103

>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus} Length = 351

 Score = 40.6 bits (96), Expect = 1e-04
 Identities = 24/97 (24%), Positives = 35/97 (36%), Gaps = 17/97 (17%)

Query: 65  VNAKGDSR--SLLVAAKFGHCDIVSVLIER-AKLLQHEDEELESGMIRMMNKEKHTALHE 121
           VN K       L VAA+  H D++ VL +  AK             +  ++    TALH 
Sbjct: 240 VNEKNKDFMTPLHVAAERAHNDVMEVLHKHGAK-------------MNALDSLGQTALHR 286

Query: 122 AVFHKIVDVVKILTREDLDYPYSANNYNKTPLCMVAE 158
           A     +   ++L     D P   +    T   M  E
Sbjct: 287 AALAGHLQTCRLLLSYGSD-PSIISLQGFTAAQMGNE 322

>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus} Length = 351

 Score = 40.2 bits (95), Expect = 1e-04
 Identities = 24/162 (14%), Positives = 45/162 (27%), Gaps = 53/162 (32%)

Query: 34  LFKAAAAGNLEPFKDMAREEILEICPSLLLQ----VNAKGDSR--SLLVAAKFGHCDIVS 87
           L  A + G+ E    +           LLL+    VNA    +   L  AA     ++ S
Sbjct: 95  LHNACSYGHYE----VTE---------LLLKHGACVNAMDLWQFTPLHEAASKNRVEVCS 141

Query: 88  VLIER-AKLLQHEDEELESGMIRMMNKEKHTALHEAVFHKIVDVVKILTREDLDYPYSA- 145
           +L+   A                ++N    +A+  A   ++ + +    +       +  
Sbjct: 142 LLLSHGAD-------------PTLVNCHGKSAVDMAPTPELRERLTYEFKGHSLLQAARE 188

Query: 146 -------------------NNYNKTPLCMVAEYEHSSHMVVA 168
                                 ++T L       H     VA
Sbjct: 189 ADLAKVKKTLALEIINFKQPQSHETALHCAVASLHPKRKQVA 230

>3v30_A DNA-binding protein rfxank; structural genomics consortium, SGC, rfxank, ANK repeat, Pro binding; 1.57A {Homo sapiens} PDB: 3uxg_A Length = 172

 Score = 45.9 bits (110), Expect = 9e-07
 Identities = 29/144 (20%), Positives = 49/144 (34%), Gaps = 36/144 (25%)

Query: 34  LFKAAAAGNLEPFKDMAREEILEICPSLLLQ----VNAKGDSRS--LLVAAKFGHCDIVS 87
           L  A+A G +E          +      LL+     +     R   L +A+  G+ DIV 
Sbjct: 40  LIWASAFGEIE---------TVR----FLLEWGADPHILAKERESALSLASTGGYTDIVG 86

Query: 88  VLIER-AKLLQHEDEELESGMIRMMNKEKHTALHEAVFHKIVDVVKILTREDLDYPYSAN 146
           +L+ER                I + +    T L  AV    V  V+ L     D   +  
Sbjct: 87  LLLERDVD-------------INIYDWNGGTPLLYAVRGNHVKCVEALLARGAD-LTTEA 132

Query: 147 NYNKTPLCMVAEYEHSSHMVVAIL 170
           +   TP+ +     +    V  ++
Sbjct: 133 DSGYTPMDLAVALGYRK--VQQVI 154

>3v30_A DNA-binding protein rfxank; structural genomics consortium, SGC, rfxank, ANK repeat, Pro binding; 1.57A {Homo sapiens} PDB: 3uxg_A Length = 172

 Score = 43.2 bits (103), Expect = 8e-06
 Identities = 15/93 (16%), Positives = 33/93 (35%), Gaps = 12/93 (12%)

Query: 69  GDSRSLLVAAKFGHCDIVSVLIERAKLLQHEDEELESGMIRMMNKEKHTALHEAVFHKIV 128
           GDS S+   A  G  D +   +      + ++   +       ++   T L  A     +
Sbjct: 1   GDSLSIHQLAAQGELDQLKEHLR-----KGDNLVNKP------DERGFTPLIWASAFGEI 49

Query: 129 DVVKILTREDLDYPYSANNYNKTPLCMVAEYEH 161
           + V+ L     D P+      ++ L + +   +
Sbjct: 50  ETVRFLLEWGAD-PHILAKERESALSLASTGGY 81

>2zgd_A 3 repeat synthetic ankyrin; ankyrin repeat, hydroxylated, de novo protein; 1.90A {Synthetic} PDB: 2zgg_A 2xen_A Length = 110

 Score = 44.5 bits (106), Expect = 1e-06
 Identities = 23/108 (21%), Positives = 42/108 (38%), Gaps = 18/108 (16%)

Query: 65  VNAKGDSRSLLVAAKFGHCDIVSVLIER-AKLLQHEDEELESGMIRMMNKEKHTALHEAV 123
           + +      LL AA+ G  D V +L+   A              +   +K   T LH A 
Sbjct: 20  MGSDLGK-KLLEAARAGQDDEVRILMANGAD-------------VAAKDKNGSTPLHLAA 65

Query: 124 FHKIVDVVKILTREDLDYPYSANNYNKTPLCMVAEYEHSSHMVVAILK 171
            +  ++VVK+L     D   + + + KT   +  +  +    +  IL+
Sbjct: 66  RNGHLEVVKLLLEAGAD-VXAQDKFGKTAFDISIDNGNED--LAEILQ 110

>2zgd_A 3 repeat synthetic ankyrin; ankyrin repeat, hydroxylated, de novo protein; 1.90A {Synthetic} PDB: 2zgg_A 2xen_A Length = 110

 Score = 39.1 bits (92), Expect = 9e-05
 Identities = 17/88 (19%), Positives = 27/88 (30%), Gaps = 22/88 (25%)

Query: 77  AAKFGHCDIVSVLIER-AKLLQHEDEELESGMIRMMNKEKHTALHEAVFHKIVDVVKILT 135
            +   H    S L+ R + +                  +    L EA      D V+IL 
Sbjct: 1   GSSHHHHHHSSGLVPRGSHM----------------GSDLGKKLLEAARAGQDDEVRILM 44

Query: 136 RE--DLDYPYSANNYNKTPLCMVAEYEH 161
               D+    + +    TPL + A   H
Sbjct: 45  ANGADVA---AKDKNGSTPLHLAARNGH 69

>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1 Length = 373

 Score = 45.7 bits (109), Expect = 2e-06
 Identities = 25/146 (17%), Positives = 52/146 (35%), Gaps = 31/146 (21%)

Query: 34  LFKAAAAGNLEPFKDMAREEILEICPSLLLQ---VNAKGDSRS--LLVAAKFGHCDIVSV 88
           L   A+  + E     + + I+      +     VNA     +  L++A       +V+ 
Sbjct: 129 LHWIASNSSAE----KSEDLIVHEAKECIAAGADVNAMDCDENTPLMLAVLARRRRLVAY 184

Query: 89  LIER-AKLLQHEDEELESGMIRMMNKEKHTALHEAVFHKIVDVVKILTRE-----DLDYP 142
           L++  A                + NK + +ALH+A  ++   ++  +        D++  
Sbjct: 185 LMKAGAD-------------PTIYNKSERSALHQAAANRDFGMMVYMLNSTKLKGDIE-- 229

Query: 143 YSANNYNKTPLCMVAEYEHSSHMVVA 168
              +    T L +VA  E    +  A
Sbjct: 230 -ELDRNGMTALMIVAHNEGRDQVASA 254

>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1 Length = 373

 Score = 41.5 bits (98), Expect = 6e-05
 Identities = 27/155 (17%), Positives = 49/155 (31%), Gaps = 38/155 (24%)

Query: 20  DNNGEISQLQIDPNLFKAAAAGNLEPFKDMAREEILEICPSLLLQ-------VNAKGDSR 72
           + +   +       L +AAA  +                   +L        +     + 
Sbjct: 196 NKSERSA-------LHQAAANRDFGMMV-------------YMLNSTKLKGDIEELDRNG 235

Query: 73  S--LLVAAKFGHCDIVSV---LIER-AKLLQHEDEELESGMIRMMNKEKHTALHEAVFHK 126
              L++ A     D V+    L+E+ AK+        +S        +  TALH A    
Sbjct: 236 MTALMIVAHNEGRDQVASAKLLVEKGAKVDYDGAARKDSE-----KYKGRTALHYAAQVS 290

Query: 127 IVDVVKILTREDLDYPYSANNYNKTPLCMVAEYEH 161
            + +VK L  E        +   KTP+ + A+   
Sbjct: 291 NMPIVKYLVGEKGSNKDKQDEDGKTPIMLAAQEGR 325

>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1 Length = 373

 Score = 40.7 bits (96), Expect = 9e-05
 Identities = 20/170 (11%), Positives = 42/170 (24%), Gaps = 37/170 (21%)

Query: 5   DMNSVSIEIEEASLLDNNGEISQLQIDPN----LFKAAAAGNLEPFKDMAREEILEICPS 60
            + S    + EAS  D   +  + ++         +    GN           + +   +
Sbjct: 33  SITSSQHSLLEASY-DGYIKRQRNELQHYSLYPNPQGYGNGNDF---------LGDFNHT 82

Query: 61  LLLQVNAK-GDSRSLLVAAKFGHCDIVSVLIER-AKLLQHEDEELESGMIRMMNKEKHTA 118
            L        +S   L     G   I   +      ++                +   T 
Sbjct: 83  NLQIPTEPEPESPIKLHTEAAGSYAITEPITRESVNIID--------------PRHNRTV 128

Query: 119 LHEAVFHKIVDVVKILTREDLDYPYSA-------NNYNKTPLCMVAEYEH 161
           LH    +   +  + L   +     +A       +    TPL +      
Sbjct: 129 LHWIASNSSAEKSEDLIVHEAKECIAAGADVNAMDCDENTPLMLAVLARR 178

>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium, SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo sapiens} PDB: 3v2x_A 3v2o_A 3so8_A Length = 167

 Score = 44.7 bits (107), Expect = 2e-06
 Identities = 25/135 (18%), Positives = 45/135 (33%), Gaps = 34/135 (25%)

Query: 34  LFKAAAAGNLEPFKDMAREEILEICPSLLLQ----VNAKGDSRS--LLVAAKFGHCDIVS 87
           + + AA G +           L       ++    +N   +     L+ AA  G   +V 
Sbjct: 7   VHQLAAQGEML---------YLA----TRIEQENVINHTDEEGFTPLMWAAAHGQIAVVE 53

Query: 88  VLIER-AKLLQHEDEELESGMIRMMNKEKHTALHEAVFHKIVDVVKILTREDLDYPYSAN 146
            L++  A               +++ K + +AL  A      D+VK+L    +D     +
Sbjct: 54  FLLQNGAD-------------PQLLGKGRESALSLACSKGYTDIVKMLLDCGVD-VNEYD 99

Query: 147 NYNKTPLCMVAEYEH 161
               TPL       H
Sbjct: 100 WNGGTPLLYAVHGNH 114

>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium, SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo sapiens} PDB: 3v2x_A 3v2o_A 3so8_A Length = 167

 Score = 39.3 bits (93), Expect = 2e-04
 Identities = 17/90 (18%), Positives = 30/90 (33%), Gaps = 15/90 (16%)

Query: 73  SLLVAAKFGHCDIVSVLIER-AKLLQHEDEELESGMIRMMNKEKHTALHEAVFHKIVDVV 131
           S+   A  G    ++  IE+                I   ++E  T L  A  H  + VV
Sbjct: 6   SVHQLAAQGEMLYLATRIEQENV-------------INHTDEEGFTPLMWAAAHGQIAVV 52

Query: 132 KILTREDLDYPYSANNYNKTPLCMVAEYEH 161
           + L +   D P       ++ L +     +
Sbjct: 53  EFLLQNGAD-PQLLGKGRESALSLACSKGY 81

>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens} Length = 285

 Score = 45.6 bits (109), Expect = 2e-06
 Identities = 37/171 (21%), Positives = 57/171 (33%), Gaps = 60/171 (35%)

Query: 34  LFKAAAAGNLEPFKDMAREEILEICPSLLLQ----VNAKGDSRS-LLVAAKFGHCDIVSV 88
           LF A  +G+ +             C +LLLQ    V  + D  S +  AA+ GH + V+ 
Sbjct: 129 LFNACVSGSWD-------------CVNLLLQHGASVQPESDLASPIHEAARRGHVECVNS 175

Query: 89  LIER--------------------------AKLLQHEDEELESGMIRMMNKEKHTALHEA 122
           LI                             K L      LESG      K + + LH  
Sbjct: 176 LIAYGGNIDHKISHLGTPLYLACENQQRACVKKL------LESGADVNQGKGQDSPLHAV 229

Query: 123 VFHKIVDVVKILTREDLDY---PYSANNYNKTPLCMVAEYEHSSHMVVAIL 170
           V     ++  +L    +D+     + N   K P+ +V      S +    L
Sbjct: 230 VRTASEELACLL----MDFGADTQAKNAEGKRPVELVPPE---SPLAQLFL 273

>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens} Length = 285

 Score = 42.1 bits (100), Expect = 3e-05
 Identities = 20/100 (20%), Positives = 31/100 (31%), Gaps = 15/100 (15%)

Query: 63  LQVNAKGDSRSLLVAAKFGHCDIVSVLIER-AKLLQHEDEELESGMIRMMNKEKHTALHE 121
           L  +A  D   +  AA  GH   +  LI +                + ++  +  + LHE
Sbjct: 52  LMGDAVSDWSPMHEAAIHGHQLSLRNLISQGWA-------------VNIITADHVSPLHE 98

Query: 122 AVFHKIVDVVKILTREDLDYPYSANNYNKTPLCMVAEYEH 161
           A     +  VKIL +              TPL        
Sbjct: 99  ACLGGHLSCVKILLKHGAQ-VNGVTADWHTPLFNACVSGS 137

>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens} Length = 285

 Score = 41.7 bits (99), Expect = 4e-05
 Identities = 24/137 (17%), Positives = 41/137 (29%), Gaps = 39/137 (28%)

Query: 34  LFKAAAAGNLEPFKDMAREEILEICPSLLLQ----VNAKGDSRS--LLVAAKFGHCDIVS 87
           + +AA  G+            L      L+     VN         L  A   GH   V 
Sbjct: 63  MHEAAIHGHQL---------SLR----NLISQGWAVNIITADHVSPLHEACLGGHLSCVK 109

Query: 88  VLIER-AKLLQHEDEELESGMIRMMNKEKHTALHEAVFHKIVDVVKILTRE--DLDYPYS 144
           +L++  A+             +  +  + HT L  A      D V +L +    +     
Sbjct: 110 ILLKHGAQ-------------VNGVTADWHTPLFNACVSGSWDCVNLLLQHGASVQ---- 152

Query: 145 ANNYNKTPLCMVAEYEH 161
             +   +P+   A   H
Sbjct: 153 PESDLASPIHEAARRGH 169

>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens} Length = 285

 Score = 40.9 bits (97), Expect = 7e-05
 Identities = 27/137 (19%), Positives = 44/137 (32%), Gaps = 39/137 (28%)

Query: 34  LFKAAAAGNLEPFKDMAREEILEICPSLLL----QVNAKGDSRS--LLVAAKFGHCDIVS 87
           L +A   G+L       +         +LL    QVN         L  A   G  D V+
Sbjct: 96  LHEACLGGHLS----CVK---------ILLKHGAQVNGVTADWHTPLFNACVSGSWDCVN 142

Query: 88  VLIER-AKLLQHEDEELESGMIRMMNKEKH--TALHEAVFHKIVDVVKILTREDLDYPYS 144
           +L++  A +                  E    + +HEA     V+ V  L     +    
Sbjct: 143 LLLQHGASV----------------QPESDLASPIHEAARRGHVECVNSLIAYGGN-IDH 185

Query: 145 ANNYNKTPLCMVAEYEH 161
             ++  TPL +  E + 
Sbjct: 186 KISHLGTPLYLACENQQ 202

>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1 Length = 285

 Score = 44.8 bits (107), Expect = 3e-06
 Identities = 32/159 (20%), Positives = 54/159 (33%), Gaps = 30/159 (18%)

Query: 20  DNNGEISQLQIDPNLFKAAAAGNLEPFKDMAREEILEICPSLLLQ----VNAKGDSR--S 73
             NG             AA AG+++         +L+    L L     VN        +
Sbjct: 69  KKNGATP-------FLLAAIAGSVK---------LLK----LFLSKGADVNECDFYGFTA 108

Query: 74  LLVAAKFGHCDIVSVLIERAKLLQHEDEELESGMIRMMNKEKHTALHEAVFHKIVDVVKI 133
            + AA +G    +  L +R   +    +  E      + K   TAL +A     V+V+KI
Sbjct: 109 FMEAAVYGKVKALKFLYKRGANVNLRRKTKED--QERLRKGGATALMDAAEKGHVEVLKI 166

Query: 134 LTREDLDYPYSANNYNKTPLCMVAEYEHSSHM--VVAIL 170
           L  E      + +N  +  L         S +  +  +L
Sbjct: 167 LLDEMGADVNACDNMGRNALIHALLSSDDSDVEAITHLL 205

>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1 Length = 285

 Score = 42.1 bits (100), Expect = 3e-05
 Identities = 26/121 (21%), Positives = 45/121 (37%), Gaps = 33/121 (27%)

Query: 20  DNNGEISQLQIDPNLFKAAAAGNLEPFKDMAREEILEICPSLLLQ----VNAKGDSRS-- 73
           DN G  +       L  A  + +    + +           LLL     VN +G+     
Sbjct: 179 DNMGRNA-------LIHALLSSDDSDVEAITH---------LLLDHGADVNVRGERGKTP 222

Query: 74  LLVAAKFGHCDIVSVLIERAKLLQHEDEELESGMIRMMNKEKHTALHEAVFHKIVDVVKI 133
           L++A +  H  +V  L+E       E  E+        + +  TAL  AV  K+  + ++
Sbjct: 223 LILAVEKKHLGLVQRLLE------QEHIEINDT-----DSDGKTALLLAVELKLKKIAEL 271

Query: 134 L 134
           L
Sbjct: 272 L 272

>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1 Length = 285

 Score = 41.7 bits (99), Expect = 4e-05
 Identities = 24/148 (16%), Positives = 41/148 (27%), Gaps = 50/148 (33%)

Query: 34  LFKAAAAGNLEPFKDMAREEILEICPSLLLQ----VNAKGDSRS--LLVAAKFGHCDIVS 87
           L  A      +         I+E    LLL+       +  + +   L+AA  G   ++ 
Sbjct: 43  LHNAVQMSRED---------IVE----LLLRHGADPVLRKKNGATPFLLAAIAGSVKLLK 89

Query: 88  VLIER-----AKLLQHEDEELESGMIRMMNKEKHTALHEAVFHKIVDVVKIL-------- 134
           + + +                        +    TA  EA  +  V  +K L        
Sbjct: 90  LFLSKGADVNEC-----------------DFYGFTAFMEAAVYGKVKALKFLYKRGANVN 132

Query: 135 -TREDLDYPYSANNYNKTPLCMVAEYEH 161
             R+  +          T L   AE  H
Sbjct: 133 LRRKTKEDQERLRKGGATALMDAAEKGH 160

>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1 Length = 285

 Score = 39.0 bits (92), Expect = 3e-04
 Identities = 20/88 (22%), Positives = 32/88 (36%), Gaps = 12/88 (13%)

Query: 74  LLVAAKFGHCDIVSVLIERAKLLQHEDEELESGMIRMMNKEKHTALHEAVFHKIVDVVKI 133
           L+ A +    D+V  L+E    +  ++            +   T LH AV     D+V++
Sbjct: 9   LIKAVQNEDVDLVQQLLEGGANVNFQE-----------EEGGWTPLHNAVQMSREDIVEL 57

Query: 134 LTREDLDYPYSANNYNKTPLCMVAEYEH 161
           L R   D P        TP  + A    
Sbjct: 58  LLRHGAD-PVLRKKNGATPFLLAAIAGS 84

>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A* Length = 273

 Score = 44.0 bits (104), Expect = 7e-06
 Identities = 24/147 (16%), Positives = 47/147 (31%), Gaps = 22/147 (14%)

Query: 34  LFKAAAAGNLEPFKDMAREEILEICPSLLLQVNAKGDSR---SLLVA---AKFGHCDIVS 87
           +F A A  N +  + +     L+     L     K        LL A      G  D ++
Sbjct: 17  IFDAVAQSNCQELESLL--PFLQRSKKRLTDSEFKDPETGKTCLLKAMLNLHNGQNDTIA 74

Query: 88  VLIERAKLLQHEDEELESGMIRMMNKEKHTALHEAVFHKIVDVVKIL------------- 134
           +L++ A+      ++  +        +  TALH A+  + + +V +L             
Sbjct: 75  LLLDVARKT-DSLKQFVNASYTDSYYKGQTALHIAIERRNMTLVTLLVENGADVQAAANG 133

Query: 135 TREDLDYPYSANNYNKTPLCMVAEYEH 161
                        + + PL + A    
Sbjct: 134 DFFKKTKGRPGFYFGELPLSLAACTNQ 160

>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A* Length = 273

 Score = 39.0 bits (91), Expect = 4e-04
 Identities = 15/103 (14%), Positives = 36/103 (34%), Gaps = 4/103 (3%)

Query: 74  LLVAAKFGHCDIVSVLIER-AKL-LQHEDEELESGMIRMMNKEKHTALHEAVFHKIVDVV 131
           L +A +  +  +V++L+E  A +      +  +    R         L  A     + +V
Sbjct: 105 LHIAIERRNMTLVTLLVENGADVQAAANGDFFKKTKGRPGFYFGELPLSLAACTNQLAIV 164

Query: 132 KILTREDLDY--PYSANNYNKTPLCMVAEYEHSSHMVVAILKN 172
           K L +         + ++   T L  + E   ++      + +
Sbjct: 165 KFLLQNSWQPADISARDSVGNTVLHALVEVADNTVDNTKFVTS 207

>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis} Length = 201

 Score = 43.6 bits (104), Expect = 7e-06
 Identities = 20/109 (18%), Positives = 39/109 (35%), Gaps = 13/109 (11%)

Query: 65  VNAKGDSRS--LLVAAKFGHCDIVSVLIERAKLLQHEDEELESGMIRMMNKEKHTALHEA 122
           +N +        L A   G  +I++ +++      H   +L        N+    AL  A
Sbjct: 65  INLQNSISDSPYLYAGAQGRTEILAYMLK------HATPDLNKH-----NRYGGNALIPA 113

Query: 123 VFHKIVDVVKILTREDLDYPYSANNYNKTPLCMVAEYEHSSHMVVAILK 171
                +D VK+L  +  +     N++  T L         + +   I+K
Sbjct: 114 AEKGHIDNVKLLLEDGREDIDFQNDFGYTALIEAVGLREGNQLYQDIVK 162

>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Homo sapiens} SCOP: d.211.1.1 PDB: 1nfi_E Length = 236

 Score = 43.7 bits (104), Expect = 8e-06
 Identities = 22/112 (19%), Positives = 40/112 (35%), Gaps = 11/112 (9%)

Query: 55  LEICPSLLLQ---VNAKGDSRS--LLVAAKFGHCDIVSVLIERAKLLQHEDEELESGMIR 109
            EI  +LL        +    +  L +A + G    V VL +               +++
Sbjct: 58  PEIAEALLGAGCDPELRDFRGNTPLHLACEQGCLASVGVLTQ------SCTTPHLHSILK 111

Query: 110 MMNKEKHTALHEAVFHKIVDVVKILTREDLDYPYSANNYNKTPLCMVAEYEH 161
             N   HT LH A  H  + +V++L     D         +T L +  + ++
Sbjct: 112 ATNYNGHTCLHLASIHGYLGIVELLVSLGADVNAQEPCNGRTALHLAVDLQN 163

>3c5r_A BARD-1, BRCA1-associated ring domain protein 1; ankyrin repeat, helix, extended loop, four repeat, PR ANK repeat, disease mutation, metal-binding; 2.00A {Homo sapiens} SCOP: k.37.1.1 Length = 137

 Score = 42.0 bits (100), Expect = 1e-05
 Identities = 29/158 (18%), Positives = 54/158 (34%), Gaps = 43/158 (27%)

Query: 20  DNNGEISQLQIDPNLFKAAAAGNLEPFKDMAREEILEICPSLLLQ----VNAKGDSRS-- 73
           ++ GE         L  A+  G++           +E     LLQ     N K  +    
Sbjct: 7   NHRGETL-------LHIASIKGDIP---------SVE----YLLQNGSDPNVKDHAGWTP 46

Query: 74  LLVAAKFGHCDIVSVLIER-AKLLQHEDEELESGMIRMMNKEKHTALHEAVFHKIVDVVK 132
           L  A   GH  +V +L++  A              +     +  + LH+A  +  VD+VK
Sbjct: 47  LHEACNHGHLKVVELLLQHKAL-------------VNTTGYQNDSPLHDAAKNGHVDIVK 93

Query: 133 ILTREDLDYPYSANNYNKTPLCMVAEYEHSSHMVVAIL 170
           +L         + N +   P+    +    S  ++ + 
Sbjct: 94  LLLSYGAS-RNAVNIFGLRPVDYTDDESMKS--LLLLP 128

>3c5r_A BARD-1, BRCA1-associated ring domain protein 1; ankyrin repeat, helix, extended loop, four repeat, PR ANK repeat, disease mutation, metal-binding; 2.00A {Homo sapiens} SCOP: k.37.1.1 Length = 137

 Score = 37.4 bits (88), Expect = 5e-04
 Identities = 21/105 (20%), Positives = 36/105 (34%), Gaps = 28/105 (26%)

Query: 65  VNAKGDSRSLL-VAAKFGHCDIVSVLIER-----AKLLQHEDEELESGMIRMMNKEKHTA 118
                   +LL +A+  G    V  L++       K                 +    T 
Sbjct: 4   PFTNHRGETLLHIASIKGDIPSVEYLLQNGSDPNVK-----------------DHAGWTP 46

Query: 119 LHEAVFHKIVDVVKILTRE--DLDYPYSANNYNKTPLCMVAEYEH 161
           LHEA  H  + VV++L +    ++   +    N +PL   A+  H
Sbjct: 47  LHEACNHGHLKVVELLLQHKALVN---TTGYQNDSPLHDAAKNGH 88

>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo sapiens} PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A 3twq_A 3twu_A 2y0i_S* Length = 165

 Score = 42.4 bits (101), Expect = 1e-05
 Identities = 24/98 (24%), Positives = 36/98 (36%), Gaps = 15/98 (15%)

Query: 65  VNAKGDSRSLLVAAKFGHCDIVSVLIERAKLLQHEDEELESGM-IRMMNKEKHTALHEAV 123
            N++ D   LL AAK G  + V  L                 +  R +   + T LH A 
Sbjct: 4   GNSEADR-QLLEAAKAGDVETVKKLCTVQ------------SVNCRDIEGRQSTPLHFAA 50

Query: 124 FHKIVDVVKILTREDLDYPYSANNYNKTPLCMVAEYEH 161
            +  V VV+ L +   D  ++ +     PL     Y H
Sbjct: 51  GYNRVSVVEYLLQHGAD-VHAKDKGGLVPLHNACSYGH 87

>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo sapiens} PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A 3twq_A 3twu_A 2y0i_S* Length = 165

 Score = 38.1 bits (90), Expect = 3e-04
 Identities = 24/98 (24%), Positives = 40/98 (40%), Gaps = 17/98 (17%)

Query: 65  VNAKGDSRS--LLVAAKFGHCDIVSVLIER-AKLLQHEDEELESGMIRMMNKEKHTALHE 121
           V+AK       L  A  +GH ++  +L++  A              + + +  K T LHE
Sbjct: 68  VHAKDKGGLVPLHNACSYGHYEVAELLVKHGAV-------------VNVADLWKFTPLHE 114

Query: 122 AVFHKIVDVVKILTREDLDYPYSANNYNKTPLCMVAEY 159
           A      ++ K+L +   D P   N    TPL +V + 
Sbjct: 115 AAAKGKYEICKLLLQHGAD-PTKKNRDGNTPLDLVKDG 151

>1awc_B Protein (GA binding protein beta 1); complex (transcription regulation/DNA), DNA-binding, nuclear protein, ETS domain, ankyrin repeats; HET: DNA BRU CBR; 2.15A {Mus musculus} SCOP: d.211.1.1 Length = 153

 Score = 42.4 bits (101), Expect = 1e-05
 Identities = 26/110 (23%), Positives = 47/110 (42%), Gaps = 19/110 (17%)

Query: 65  VNAKGDSRS--LLVAAKFGHCDIVSVLIER-AKLLQHEDEELESGMIRMMNKEKHTALHE 121
            +A+       L +AA  GH +IV VL++  A              +   +  K TALH 
Sbjct: 60  RDARTKVDRTPLHMAASEGHANIVEVLLKHGAD-------------VNAKDMLKMTALHW 106

Query: 122 AVFHKIVDVVKILTREDLDYPYSANNYNKTPLCMVAEYEHSSHMVVAILK 171
           A  H   +VV++L +   D  ++ + + KT   +  +  +    +  IL+
Sbjct: 107 ATEHNHQEVVELLIKYGAD-VHTQSKFCKTAFDISIDNGN--EDLAEILQ 153

>1awc_B Protein (GA binding protein beta 1); complex (transcription regulation/DNA), DNA-binding, nuclear protein, ETS domain, ankyrin repeats; HET: DNA BRU CBR; 2.15A {Mus musculus} SCOP: d.211.1.1 Length = 153

 Score = 39.7 bits (94), Expect = 9e-05
 Identities = 20/91 (21%), Positives = 32/91 (35%), Gaps = 20/91 (21%)

Query: 74  LLVAAKFGHCDIVSVLIER-AKLLQHEDEELESGMIRMMNKEKH--TALHEAVFHKIVDV 130
           LL AA+ G  D V +L+   A                    +    + LH A  +     
Sbjct: 6   LLEAARAGQDDEVRILMANGAPF----------------TTDWLGTSPLHLAAQYGHFST 49

Query: 131 VKILTREDLDYPYSANNYNKTPLCMVAEYEH 161
            ++L R  +    +    ++TPL M A   H
Sbjct: 50  TEVLLRAGVS-RDARTKVDRTPLHMAASEGH 79

>3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 3ixe_A 2kbx_A Length = 179

 Score = 42.8 bits (102), Expect = 1e-05
 Identities = 25/118 (21%), Positives = 39/118 (33%), Gaps = 25/118 (21%)

Query: 51  REEILEICPSLLLQ----VNAKGDSRS--LLVAAKFGHCDIVSVLIER-AKLLQHEDEEL 103
           R  ++E    +L+     +N         L +AA  GH DIV  L++  A          
Sbjct: 51  RSAVVE----MLIMRGARINVMNRGDDTPLHLAASHGHRDIVQKLLQYKAD--------- 97

Query: 104 ESGMIRMMNKEKHTALHEAVFHKIVDVVKILTREDLDYPYSANNYNKTPLCMVAEYEH 161
               I  +N+  +  LH A F     V + L           N Y + P+        
Sbjct: 98  ----INAVNEHGNVPLHYACFWGQDQVAEDLVANGAL-VSICNKYGEMPVDKAKAPLR 150

>3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 3ixe_A 2kbx_A Length = 179

 Score = 42.4 bits (101), Expect = 2e-05
 Identities = 31/136 (22%), Positives = 45/136 (33%), Gaps = 35/136 (25%)

Query: 34  LFKAAAAGNLEPFKDMAREEILEICPSLLLQ-----VNAKGDSRS--LLVAAKFGHCDIV 86
           +F     GN        R         L L      +N   D     L  A + G   +V
Sbjct: 9   IFTQCREGNAV----AVR---------LWLDNTENDLNQGDDHGFSPLHWACREGRSAVV 55

Query: 87  SVLIER-AKLLQHEDEELESGMIRMMNKEKHTALHEAVFHKIVDVVKILTREDLDYPYSA 145
            +LI R A+             I +MN+   T LH A  H   D+V+ L +   D   + 
Sbjct: 56  EMLIMRGAR-------------INVMNRGDDTPLHLAASHGHRDIVQKLLQYKAD-INAV 101

Query: 146 NNYNKTPLCMVAEYEH 161
           N +   PL     +  
Sbjct: 102 NEHGNVPLHYACFWGQ 117

>3deo_A Signal recognition particle 43 kDa protein; chloroplast SRP system, signal sequence, ankyrin repeat, chromodomain, type I turn; 1.50A {Arabidopsis thaliana} SCOP: b.34.13.2 k.37.1.1 PDB: 3dep_A 1x32_A Length = 183

 Score = 42.5 bits (101), Expect = 1e-05
 Identities = 17/97 (17%), Positives = 31/97 (31%), Gaps = 14/97 (14%)

Query: 65  VNAKGDSRSLLVAAKFGHCDIVSVLIERAKLLQHEDEELESGMIRMMNKEKHTALHEAVF 124
           V ++ ++     AA+      +S L+E                +  +++   TAL     
Sbjct: 40  VVSEYET-PWWTAARKADEQALSQLLEDRD-------------VDAVDENGRTALLFVAG 85

Query: 125 HKIVDVVKILTREDLDYPYSANNYNKTPLCMVAEYEH 161
                 V++L     D  +       T L M A Y  
Sbjct: 86  LGSDKCVRLLAEAGADLDHRDMRGGLTALHMAAGYVR 122

>3deo_A Signal recognition particle 43 kDa protein; chloroplast SRP system, signal sequence, ankyrin repeat, chromodomain, type I turn; 1.50A {Arabidopsis thaliana} SCOP: b.34.13.2 k.37.1.1 PDB: 3dep_A 1x32_A Length = 183

 Score = 40.6 bits (96), Expect = 8e-05
 Identities = 26/138 (18%), Positives = 41/138 (29%), Gaps = 40/138 (28%)

Query: 34  LFKAAAAGNLEPFKDMAREEILEICPSLLLQ---VNAKGDSRS--LLVAAKFGHCDIVSV 88
            + AA   + +          L      LL+   V+A  ++    LL  A  G    V +
Sbjct: 48  WWTAARKADEQ---------ALS----QLLEDRDVDAVDENGRTALLFVAGLGSDKCVRL 94

Query: 89  LIER-----AKLLQHEDEELESGMIRMMNKEKHTALHEAVFHKIVDVVKILTREDLDYPY 143
           L E       +                  +   TALH A  +   +VV+ L     D   
Sbjct: 95  LAEAGADLDHR----------------DMRGGLTALHMAAGYVRPEVVEALVELGAD-IE 137

Query: 144 SANNYNKTPLCMVAEYEH 161
             +    T L +  E   
Sbjct: 138 VEDERGLTALELAREILK 155

>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A Length = 222

 Score = 43.0 bits (102), Expect = 1e-05
 Identities = 28/150 (18%), Positives = 50/150 (33%), Gaps = 34/150 (22%)

Query: 18  LLDNNGEISQLQ--IDPNLFKAAAAGNLEPFKDMAREEILEICPSLLLQVNAKGDSRSLL 75
           L    G+I  +    D N +K  + G               + PS  +   A+     L 
Sbjct: 31  LYIEEGDIIYITDMSDTNWWKGTSKGRTG------------LIPSNYVAEQAESIDNPLH 78

Query: 76  VAAKFGHCDIVSVLIER-AKLLQHEDEELESGMIRMMNKEKHTALHEAVFHKIVDVVKIL 134
            AAK G+   +   ++                 +  ++K   TAL+ A      D+V++L
Sbjct: 79  EAAKRGNLSWLRECLDNRVG-------------VNGLDKAGSTALYWACHGGHKDIVEML 125

Query: 135 TRE---DLDYPYSANNYNKTPLCMVAEYEH 161
             +   +L+     N    T L   A   +
Sbjct: 126 FTQPNIELN---QQNKLGDTALHAAAWKGY 152

>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A Length = 222

 Score = 40.7 bits (96), Expect = 8e-05
 Identities = 28/138 (20%), Positives = 47/138 (34%), Gaps = 34/138 (24%)

Query: 34  LFKAAAAGNLEPFKDMAREEILEICPSLLLQ----VNAKGDSRS--LLVAAKFGHCDIVS 87
           L+ A   G+ +         I+E+   L  Q    +N +       L  AA  G+ DIV 
Sbjct: 110 LYWACHGGHKD---------IVEM---LFTQPNIELNQQNKLGDTALHAAAWKGYADIVQ 157

Query: 88  VLIER-AKLLQHEDEELESGMIRMMNKEKHTALHEAVFHKIVDVVKILTREDLDYPYSAN 146
           +L+ + A+               + N EK  A   A       ++K     D      +N
Sbjct: 158 LLLAKGAR-------------TDLRNIEKKLAFDMATNAACASLLKKKQGTDAV-RTLSN 203

Query: 147 NYNKTPLCMVAEYEHSSH 164
             +       ++ EH  H
Sbjct: 204 AEDYLDD-EDSDLEHHHH 220

>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D Length = 282

 Score = 43.3 bits (103), Expect = 1e-05
 Identities = 12/113 (10%), Positives = 27/113 (23%), Gaps = 30/113 (26%)

Query: 61  LLLQ----VNAKGDSR---SLLVAAKFGHCDIVSVLIER-----AKLLQHEDEELESGMI 108
           LL      +N    +     L +A +     ++ +L++      A+              
Sbjct: 176 LLRDAGADLNKPEPTCGRTPLHLAVEAQAASVLELLLKAGADPTAR-------------- 221

Query: 109 RMMNKEKHTALHEAVFHKIVDVVKILTREDLDYPYSANNYNKTPLCMVAEYEH 161
                   T L  A+      + ++L                +P         
Sbjct: 222 ---MYGGRTPLGSALLRPNPILARLLRAHGAP-EPEDGGDKLSPCSSSGSDSD 270

>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D Length = 282

 Score = 39.1 bits (92), Expect = 4e-04
 Identities = 17/110 (15%), Positives = 33/110 (30%), Gaps = 11/110 (10%)

Query: 52  EEILEICPSLLLQVNAKGDSRSLLVAAKFGHCDIVSVLIERAKLLQHEDEELESGMIRMM 111
            +  +   +               V ++    +                +      +   
Sbjct: 106 RDASDTYLTQSQDCTPDTSHAPAAVDSQPNPENEEEPR-----DEDWRLQ------LEAE 154

Query: 112 NKEKHTALHEAVFHKIVDVVKILTREDLDYPYSANNYNKTPLCMVAEYEH 161
           N + HT LH AV HK  ++V++L     D         +TPL +  E + 
Sbjct: 155 NYDGHTPLHVAVIHKDAEMVRLLRDAGADLNKPEPTCGRTPLHLAVEAQA 204

>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D Length = 282

 Score = 37.9 bits (89), Expect = 7e-04
 Identities = 16/89 (17%), Positives = 23/89 (25%), Gaps = 12/89 (13%)

Query: 74  LLVAAKFGHCDIVSVLIER-AKLLQHEDEELESGMIRMMNKEKHTALHEAVFHKIVDVVK 132
           L +A    H   +  L+   A              + + N    TALH A        V+
Sbjct: 13  LHLAVIHQHEPFLDFLLGFSAGHEY----------LDLQNDLGQTALHLAAILGEASTVE 62

Query: 133 ILTREDLDYPYSANNYNKTPLCMVAEYEH 161
            L          A     T L +      
Sbjct: 63  KLYAAGAG-VLVAERGGHTALHLACRVRA 90

>3ui2_A Signal recognition particle 43 kDa protein, chlor; ankyrin repeat, chromodomain, aromatic CAGE, signal recognit particle, protein targeting; 3.18A {Arabidopsis thaliana} PDB: 1x3q_A 2hug_A Length = 244

 Score = 43.0 bits (102), Expect = 1e-05
 Identities = 17/97 (17%), Positives = 31/97 (31%), Gaps = 14/97 (14%)

Query: 65  VNAKGDSRSLLVAAKFGHCDIVSVLIERAKLLQHEDEELESGMIRMMNKEKHTALHEAVF 124
           V ++ ++     AA+      +S L+E                +  +++   TAL     
Sbjct: 41  VVSEYET-PWWTAARKADEQALSQLLEDRD-------------VDAVDENGRTALLFVAG 86

Query: 125 HKIVDVVKILTREDLDYPYSANNYNKTPLCMVAEYEH 161
                 V++L     D  +       T L M A Y  
Sbjct: 87  LGSDKCVRLLAEAGADLDHRDMRGGLTALHMAAGYVR 123

>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens} Length = 240

 Score = 42.8 bits (102), Expect = 1e-05
 Identities = 21/106 (19%), Positives = 34/106 (32%), Gaps = 18/106 (16%)

Query: 65  VNAKGDSR---SLLVAAKFGHCDIVSVLIER-AKLLQHEDEELESGMIRMMNKEKHTALH 120
           V+  G       L  A + GH  +V  L++  A                +++ E  + +H
Sbjct: 68  VDQLGGDLNSTPLHWATRQGHLSMVVQLMKYGAD-------------PSLIDGEGCSCIH 114

Query: 121 EAVFHKIVDVVKILTREDLDYPYSANNYNKTPLCMVAEYEHSSHMV 166
            A       +V  L  +  D     +    TPL   A   HS    
Sbjct: 115 LAAQFGHTSIVAYLIAKGQD-VDMMDQNGMTPLMWAAYRTHSVDPT 159

>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens} Length = 240

 Score = 41.3 bits (98), Expect = 5e-05
 Identities = 20/101 (19%), Positives = 35/101 (34%), Gaps = 16/101 (15%)

Query: 64  QVNAKGDSRS--LLVAAKFGHCDIVSVLIER-AKLLQHEDEELESGMIRMMNKEKHTALH 120
            +    D  +  ++ A ++G  +    L+E                 +R  +KE  T LH
Sbjct: 1   HMTHIDDYSTWDIVKATQYGIYERCRELVEAGYD-------------VRQPDKENVTLLH 47

Query: 121 EAVFHKIVDVVKILTREDLDYPYSANNYNKTPLCMVAEYEH 161
            A  +  +D+VK    +         + N TPL       H
Sbjct: 48  WAAINNRIDLVKYYISKGAIVDQLGGDLNSTPLHWATRQGH 88

>1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene family, nuclear protein, phosphorylation, disease mutation, polymorphism; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.211.1.1 PDB: 4a63_B Length = 239

 Score = 43.0 bits (102), Expect = 1e-05
 Identities = 26/148 (17%), Positives = 45/148 (30%), Gaps = 40/148 (27%)

Query: 20  DNNGEISQLQIDPNLFKAAAAGNLEPFKDMAREEILEICPSLLLQ----VNAKGDSR-SL 74
           +  G++S       L         +                  +     V         L
Sbjct: 2   EITGQVS-------LPPGKRTNLRKTGS-------------ERIAHGMRVKFNPLPLALL 41

Query: 75  LVAAKFGHCDIVSVLIER-AKLLQHEDEELESGMIRMMNKEKHTALHEAVFHKIVDVVKI 133
           L ++  G  D+V  +I                    + N E  TALH AV     ++VK 
Sbjct: 42  LDSSLEGEFDLVQRIIYEVDD-------------PSLPNDEGITALHNAVCAGHTEIVKF 88

Query: 134 LTREDLDYPYSANNYNKTPLCMVAEYEH 161
           L +  ++   +A++   TPL   A   +
Sbjct: 89  LVQFGVN-VNAADSDGWTPLHCAASCNN 115

>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A Length = 260

 Score = 42.8 bits (101), Expect = 2e-05
 Identities = 23/153 (15%), Positives = 44/153 (28%), Gaps = 34/153 (22%)

Query: 34  LFKAAAAGNLEPFKDMAREEILEICPSLLLQ---VNAKGDSRS------LLVAA---KFG 81
           LF   + G+ +         +  +   LL     +  +           L  A      G
Sbjct: 9   LFDIVSRGSPD--------GLEGLLSFLLTHKKRLTDEEFREPSTGKTCLPKALLNLSAG 60

Query: 82  HCDIVSVLIERAKLLQHEDEELESGMIRMMNKEKHTALHEAVFHKIVDVVKIL------- 134
             D + +L++ A+       E  +   R +     TALH A+  +    V++L       
Sbjct: 61  RNDTIPILLDIAEKTG-NMREFINSPFRDVYYRGQTALHIAIERRCKHYVELLVEKGADV 119

Query: 135 ------TREDLDYPYSANNYNKTPLCMVAEYEH 161
                              + + PL + A    
Sbjct: 120 HAQARGRFFQPKDEGGYFYFGELPLSLAACTNQ 152

>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A Length = 241

 Score = 42.8 bits (102), Expect = 2e-05
 Identities = 19/88 (21%), Positives = 34/88 (38%), Gaps = 9/88 (10%)

Query: 74  LLVAAKFGHCDIVSVLIERAKLLQHEDEELESGMIRMMNKEKHTALHEAVFHKIVDVVKI 133
           L +A   G+   V  L+      Q   E      + + N  + T LH AV   +  VV++
Sbjct: 13  LHIAVVQGNLPAVHRLVNL--FQQGGRE------LDIYNNLRQTPLHLAVITTLPSVVRL 64

Query: 134 LTREDLDYPYSANNYNKTPLCMVAEYEH 161
           L       P + + + +T   +  E+  
Sbjct: 65  LVTAGAS-PMALDRHGQTAAHLACEHRS 91

>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A Length = 241

 Score = 40.5 bits (96), Expect = 8e-05
 Identities = 17/100 (17%), Positives = 30/100 (30%), Gaps = 12/100 (12%)

Query: 65  VNAKGDSRS--LLVAAKFGHCDIVSVLIER-AKLLQHEDEELESGMIRMMNKEKHTALHE 121
             A          +A +      +  L++  A      +           N +  TALH 
Sbjct: 72  PMALDRHGQTAAHLACEHRSPTCLRALLDSAAPGTLDLEAR---------NYDGLTALHV 122

Query: 122 AVFHKIVDVVKILTREDLDYPYSANNYNKTPLCMVAEYEH 161
           AV  +  + V++L     D         ++PL    E   
Sbjct: 123 AVNTECQETVQLLLERGADIDAVDIKSGRSPLIHAVENNS 162

>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A Length = 241

 Score = 38.6 bits (91), Expect = 4e-04
 Identities = 21/106 (19%), Positives = 38/106 (35%), Gaps = 28/106 (26%)

Query: 65  VNAKGDSRS----LLVAAKFGHCDIVSVLIER-----AKLLQHEDEELESGMIRMMNKEK 115
           ++A  D +S    L+ A +     +V +L++      A+                     
Sbjct: 142 IDAV-DIKSGRSPLIHAVENNSLSMVQLLLQHGANVNAQ-----------------MYSG 183

Query: 116 HTALHEAVFHKIVDVVKILTREDLDYPYSANNYNKTPLCMVAEYEH 161
            +ALH A    ++ +V+ L R   D     N +N TPL +      
Sbjct: 184 SSALHSASGRGLLPLVRTLVRSGAD-SSLKNCHNDTPLMVARSRRV 228

>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A Length = 223

 Score = 42.4 bits (101), Expect = 2e-05
 Identities = 21/119 (17%), Positives = 34/119 (28%), Gaps = 28/119 (23%)

Query: 54  ILEICPSLLLQ----VNAKGDSRS--LLVAAKFGHCDIVSVLIER-----AKLLQHEDEE 102
              +    + Q     N    +    L +AA++   D    L+E       +        
Sbjct: 3   APAVISDFIYQGASLHNQTDRTGETALHLAARYSRSDAAKRLLEASADANIQ-------- 54

Query: 103 LESGMIRMMNKEKHTALHEAVFHKIVDVVKILTREDLDYPYSANNYNKTPLCMVAEYEH 161
                    +    T LH AV      V +IL R       +  +   TPL + A    
Sbjct: 55  ---------DNMGRTPLHAAVSADAQGVFQILIRNRATDLDARMHDGTTPLILAARLAV 104

>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A Length = 223

 Score = 39.7 bits (94), Expect = 2e-04
 Identities = 23/103 (22%), Positives = 36/103 (34%), Gaps = 23/103 (22%)

Query: 65  VNAKGDSR--SLLVAAKFGHCDIVSVLIER-AKLLQHEDEELESGMIRMMNKEKHTALHE 121
           VNA  D    +L  AA   + D   VL++  A                M N  + T L  
Sbjct: 118 VNAVDDLGKSALHWAAAVNNVDAAVVLLKNGAN-------------KDMQNNREETPLFL 164

Query: 122 AVFHKIVDVVKILTREDLDY---PYSANNYNKTPLCMVAEYEH 161
           A      +  K+L    LD+       ++ ++ P  +  E  H
Sbjct: 165 AAREGSYETAKVL----LDHFANRDITDHMDRLPRDIAQERMH 203

>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A Length = 223

 Score = 37.8 bits (89), Expect = 6e-04
 Identities = 28/149 (18%), Positives = 50/149 (33%), Gaps = 40/149 (26%)

Query: 20  DNNGEISQLQIDPNLFKAAAAGNLEPFKDMAREEILEICPSLLLQ----VNAKGDSRS-- 73
           DN G          L  A +A             + +I   L+      ++A+    +  
Sbjct: 55  DNMGRTP-------LHAAVSADAQG---------VFQI---LIRNRATDLDARMHDGTTP 95

Query: 74  LLVAAKFGHCDIVSVLIER-AKLLQHEDEELESGMIRMMNKEKHTALHEAVFHKIVDVVK 132
           L++AA+     ++  LI   A              +  ++    +ALH A     VD   
Sbjct: 96  LILAARLAVEGMLEDLINSHAD-------------VNAVDDLGKSALHWAAAVNNVDAAV 142

Query: 133 ILTREDLDYPYSANNYNKTPLCMVAEYEH 161
           +L +   +     NN  +TPL + A    
Sbjct: 143 VLLKNGAN-KDMQNNREETPLFLAAREGS 170

>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1 Length = 299

 Score = 42.5 bits (101), Expect = 2e-05
 Identities = 26/100 (26%), Positives = 35/100 (35%), Gaps = 16/100 (16%)

Query: 64  QVNAK-GDSRSLLVAAKFGHCDIVSVLIER-AKLLQHEDEELESGMIRMMNKEKHTALHE 121
           +   K  D    L A   G  + V  L+ER A              I   N +  TALH+
Sbjct: 33  KTKVKFDDGAVFLAACSSGDTEEVLRLLERGAD-------------INYANVDGLTALHQ 79

Query: 122 AVFHKIVDVVKILTREDLDYPYSANNYNKTPLCMVAEYEH 161
           A     VD+VK L     +     +N    PL   A   +
Sbjct: 80  ACIDDNVDMVKFLVENGAN-INQPDNEGWIPLHAAASCGY 118

>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1 Length = 299

 Score = 39.4 bits (93), Expect = 2e-04
 Identities = 20/111 (18%), Positives = 38/111 (34%), Gaps = 18/111 (16%)

Query: 65  VNAKGDSRS--LLVAAKFGHCDIVSVLIER-AKLLQHEDEELESGMIRMMNKEKHTALHE 121
                 S    L VAA  G+ +++ +LI+                 + + + +  T LH 
Sbjct: 192 DVRHAKSGGTALHVAAAKGYTEVLKLLIQARYD-------------VNIKDYDGWTPLHA 238

Query: 122 AVFHKIVDVVKILTREDLDYPYSANNYNKTPLCMVAEYEHSSHMVVAILKN 172
           A      +  +IL     D   + N   +T    VA+ +   ++     K 
Sbjct: 239 AAHWGKEEACRILVENLCD-MEAVNKVGQTAF-DVADEDILGYLEELQKKQ 287

>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A Length = 256

 Score = 42.1 bits (99), Expect = 3e-05
 Identities = 24/147 (16%), Positives = 49/147 (33%), Gaps = 19/147 (12%)

Query: 32  PNLFKAAAAGNLEPFKDMAREEILEICPSLLLQVNAKGDSRS--LLVAA---KFGHCDIV 86
             LF   + G  E    +  E +      L      +G +    L+ A    + G    +
Sbjct: 4   DRLFSVVSRGVPEELTGL-LEYLRWNSKYLTDSAYTEGSTGKTCLMKAVLNLQDGVNACI 62

Query: 87  SVLIERAKLLQHEDEELESGMIRMMNKEKHTALHEAVFHKIVDVVKIL------------ 134
             L++  K   +    + +        + H+ALH A+  + +  VK+L            
Sbjct: 63  MPLLQIDKDSGNPKPLVNAQ-CTDEFYQGHSALHIAIEKRSLQCVKLLVENGADVHLRAC 121

Query: 135 TREDLDYPYSANNYNKTPLCMVAEYEH 161
            R    +  +   + + PL + A  + 
Sbjct: 122 GRFFQKHQGTCFYFGELPLSLAACTKQ 148

>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A Length = 256

 Score = 41.3 bits (97), Expect = 6e-05
 Identities = 17/95 (17%), Positives = 35/95 (36%), Gaps = 8/95 (8%)

Query: 74  LLVAAKFGHCDIVSVLIERAKLLQHEDEELESGM-------IRMMNKEKHTALHEAVFHK 126
           L +AA     D+V+ L+E        +     G        +   N  +++AL   ++  
Sbjct: 140 LSLAACTKQWDVVTYLLENPHQPASLEATDSLGNTVLHALVMIADNSPENSALVIHMYDG 199

Query: 127 IVDVVKILTREDLDYPYSANNYNKTPLCMVAEYEH 161
           ++ +   L          +N+   TPL + A+   
Sbjct: 200 LLQMGARLCPTVQL-EEISNHQGLTPLKLAAKEGK 233

>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus} Length = 232

 Score = 41.8 bits (99), Expect = 3e-05
 Identities = 29/147 (19%), Positives = 52/147 (35%), Gaps = 39/147 (26%)

Query: 34  LFKAAAAGNLEPFKDMAREEILEICPSLLLQ----VNAKGDSR--SLLVAAKFGHCDIVS 87
           L  AA   +++         + +    LL      V+ +G     +L +AA + + +   
Sbjct: 7   LLLAAKENDVQ--------ALSK----LLKFEGCEVHQRGAMGETALHIAALYDNLEAAM 54

Query: 88  VLIER-AKLLQHEDEELESGMIRMMNKEKHTALHEAVFHKIVDVVKIL------------ 134
           VL+E   +L+                 E  TALH AV ++ V++V+ L            
Sbjct: 55  VLMEAAPELVFEPMTS--------ELYEGQTALHIAVINQNVNLVRALLARGASVSARAT 106

Query: 135 TREDLDYPYSANNYNKTPLCMVAEYEH 161
                  P++   Y + PL   A    
Sbjct: 107 GSVFHYRPHNLIYYGEHPLSFAACVGS 133

>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus} Length = 232

 Score = 37.6 bits (88), Expect = 8e-04
 Identities = 21/98 (21%), Positives = 29/98 (29%), Gaps = 23/98 (23%)

Query: 74  LLVAAKFGHCDIVSVLIER-AKLLQHEDEELESGMIRMMNKEKHTALHEAVFHKIVDVVK 132
           L  AA  G  +IV +LIE  A              IR  +   +T LH  +         
Sbjct: 125 LSFAACVGSEEIVRLLIEHGAD-------------IRAQDSLGNTVLHILILQPNKTFAC 171

Query: 133 ILTREDLDY---------PYSANNYNKTPLCMVAEYEH 161
            +    L Y             NN   TP  +     +
Sbjct: 172 QMYNLLLSYDGGDHLKSLELVPNNQGLTPFKLAGVEGN 209

>1n0r_A 4ANK, 4 ankyrin repeats; structural protein; 1.50A {} SCOP: k.37.1.1 Length = 126

 Score = 40.0 bits (95), Expect = 5e-05
 Identities = 29/106 (27%), Positives = 47/106 (44%), Gaps = 29/106 (27%)

Query: 65  VNAKGDSRS--LLVAAKFGHCDIVSVLIER-----AKLLQHEDEELESGMIRMMNKEKHT 117
           VNAK  +    L +AA+ GH ++V +L+E      AK                 +K   T
Sbjct: 28  VNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVNAK-----------------DKNGRT 70

Query: 118 ALHEAVFHKIVDVVKILTRE--DLDYPYSANNYNKTPLCMVAEYEH 161
            LH A  +  ++VVK+L     D++   + +   +TPL + A   H
Sbjct: 71  PLHLAARNGHLEVVKLLLEAGADVN---AKDKNGRTPLHLAARNGH 113

>1n0r_A 4ANK, 4 ankyrin repeats; structural protein; 1.50A {} SCOP: k.37.1.1 Length = 126

 Score = 40.0 bits (95), Expect = 6e-05
 Identities = 25/95 (26%), Positives = 42/95 (44%), Gaps = 27/95 (28%)

Query: 74  LLVAAKFGHCDIVSVLIER-----AKLLQHEDEELESGMIRMMNKEKHTALHEAVFHKIV 128
           L +AA+ GH ++V +L+E      AK                 +K   T LH A  +  +
Sbjct: 6   LHLAARNGHLEVVKLLLEAGADVNAK-----------------DKNGRTPLHLAARNGHL 48

Query: 129 DVVKILTRE--DLDYPYSANNYNKTPLCMVAEYEH 161
           +VVK+L     D++   + +   +TPL + A   H
Sbjct: 49  EVVKLLLEAGADVN---AKDKNGRTPLHLAARNGH 80

>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis} Length = 186

 Score = 40.8 bits (96), Expect = 5e-05
 Identities = 13/106 (12%), Positives = 27/106 (25%), Gaps = 16/106 (15%)

Query: 34  LFKAAAAGNLEPFKDMAREEILEICPSLLLQ---VNAKGDSRS--LLVAAKFGHCDIVSV 88
            F     G  +           E+C   L +   + A        +         D   +
Sbjct: 79  FFPLFQGGGNDITGT------TELCKIFLEKGADITALYKPYKIVVFKNIFNYFVDENEM 132

Query: 89  LIERAKLLQHEDEELESGMIRMMNKEKHTALHEAVFHKIVDVVKIL 134
           +     +      +L        +K   TAL      +    +K++
Sbjct: 133 IPLYKLIFSQSGLQLLI-----KDKWGLTALEFVKRCQKPIALKMM 173

>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis} Length = 186

 Score = 39.7 bits (93), Expect = 1e-04
 Identities = 21/150 (14%), Positives = 43/150 (28%), Gaps = 32/150 (21%)

Query: 31  DPNLFKAAAAGNLEPFKDMAREEILEICPSLLLQ----VNAKGDSRS--LLVAAKFGHCD 84
              L+      N E    ++           L+     + ++    +       + G  D
Sbjct: 39  SNILYDVLRNNNDEARYKISM---------FLINKGADIKSRTKEGTTLFFPLFQGGGND 89

Query: 85  IVSVLIERAKLLQHEDEELESGM-IRMMNKEKHTALHEAVFHKIVDVVK-------ILTR 136
           I     E  K+       LE G  I  + K     + + +F+  VD  +       I ++
Sbjct: 90  ITGTT-ELCKIF------LEKGADITALYKPYKIVVFKNIFNYFVDENEMIPLYKLIFSQ 142

Query: 137 EDLDYPYSANNYNKTPLCMVAEYEHSSHMV 166
             L      + +  T L    +       +
Sbjct: 143 SGLQ-LLIKDKWGLTAL-EFVKRCQKPIAL 170

>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis} Length = 186

 Score = 38.5 bits (90), Expect = 3e-04
 Identities = 15/102 (14%), Positives = 27/102 (26%), Gaps = 16/102 (15%)

Query: 66  NAKGDSRSLLVAAKFGHCDIVSVLIER---AKLLQHEDEELESGMIRMMNKEKHTALHEA 122
           NA  + R++  AA  G  +    L E+    K    +   L            +  L   
Sbjct: 2   NAMSEYRTVSAAAMLGTYEDFLELFEKGYEDKESVLKSNIL------------YDVLRNN 49

Query: 123 VFHKIVDVVKILTREDLDYPYSANNYNKTPLCMVAEYEHSSH 164
                  +   L  +  D   S      T    + +   +  
Sbjct: 50  NDEARYKISMFLINKGAD-IKSRTKEGTTLFFPLFQGGGNDI 90

>1bi7_B P16INK4A, MTS1, multiple tumor suppressor; cyclin dependent kinase, cyclin dependent kinase inhibitory protein, CDK, cell cycle; 3.40A {Homo sapiens} SCOP: d.211.1.1 PDB: 1a5e_A 1dc2_A 2a5e_A Length = 156

 Score = 40.5 bits (96), Expect = 5e-05
 Identities = 17/109 (15%), Positives = 29/109 (26%), Gaps = 27/109 (24%)

Query: 61  LLLQ----VNAK---GDSRSLLVAAKFGHCDIVSVLIER-AKLLQHEDEELESGMIRMMN 112
           LLL      N       +R +  AA+ G  D + VL    A+             + + +
Sbjct: 62  LLLLHGAEPNCADPATLTRPVHDAAREGFLDTLVVLHRAGAR-------------LDVRD 108

Query: 113 KEKHTALHEAVFHKIVDVVKILTREDLDYPYSANNYNKTPLCMVAEYEH 161
                 +  A      DV + L         +          + A    
Sbjct: 109 AWGRLPVDLAEELGHRDVARYLRA------AAGGTRGSNHARIDAAEGP 151

>1ihb_A P18-INK4C(INK6), cyclin-dependent kinase 6 inhibitor; cell cycle inhibitor, ankyrin repeat, CDK 4/6 inhibitor; 1.95A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bu9_A 1g3n_B 1mx4_A 1mx2_A 1mx6_A Length = 162

 Score = 40.4 bits (96), Expect = 6e-05
 Identities = 25/131 (19%), Positives = 41/131 (31%), Gaps = 31/131 (23%)

Query: 37  AAAAGNLEPFKDMAREEILEICPSLLLQ---VNAKGDSRS--LLVAAKFGHCDIVSVLIE 91
               GN E         I      LLL+    + K  +    +  AA+ G  D +  L+E
Sbjct: 44  VMKLGNPE---------IARR---LLLRGANPDLKDRTGFAVIHDAARAGFLDTLQTLLE 91

Query: 92  R-AKLLQHEDEELESGMIRMMNKEKHTALHEAVFHKIVDVVKILTREDLDYPYSANNYNK 150
             A              + + + E +  LH A     + VV+ L +         N+   
Sbjct: 92  FQAD-------------VNIEDNEGNLPLHLAAKEGHLRVVEFLVKHTASNVGHRNHKGD 138

Query: 151 TPLCMVAEYEH 161
           T   +   Y  
Sbjct: 139 TACDLARLYGR 149

>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A* Length = 237

 Score = 41.2 bits (98), Expect = 6e-05
 Identities = 23/100 (23%), Positives = 44/100 (44%), Gaps = 17/100 (17%)

Query: 65  VNAKGDSR--SLLVAAKFGHCDIVSVLIER-AKLLQHEDEELESGMIRMMNKEKHTALHE 121
           VN + D     ++ A ++ H D+V +L+ + +              I + + E++  LH 
Sbjct: 104 VNCQDDGGWTPMIWATEYKHVDLVKLLLSKGSD-------------INIRDNEENICLHW 150

Query: 122 AVFHKIVDVVKILTREDLDYPYSANNYNKTPLCMVAEYEH 161
           A F   VD+ +IL     D  ++ N +  +PL + A    
Sbjct: 151 AAFSGCVDIAEILLAAKCD-LHAVNIHGDSPLHIAARENR 189

>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A* Length = 237

 Score = 40.9 bits (97), Expect = 6e-05
 Identities = 21/100 (21%), Positives = 39/100 (39%), Gaps = 17/100 (17%)

Query: 65  VNAKGDSRS--LLVAAKFGHCDIVSVLIER-AKLLQHEDEELESGMIRMMNKEKHTALHE 121
              +  ++   L  AA+ GH DI  +L++  A              I   ++++ T L E
Sbjct: 4   FKMEHQNKRSPLHAAAEAGHVDICHMLVQAGAN-------------IDTCSEDQRTPLME 50

Query: 122 AVFHKIVDVVKILTREDLDYPYSANNYNKTPLCMVAEYEH 161
           A  +  ++ VK L +         +    T L + A+  H
Sbjct: 51  AAENNHLEAVKYLIKAGAL-VDPKDAEGSTCLHLAAKKGH 89

>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A Length = 228

 Score = 40.5 bits (96), Expect = 8e-05
 Identities = 17/100 (17%), Positives = 31/100 (31%), Gaps = 16/100 (16%)

Query: 65  VNAKGDSRS--LLVAAKFGHCDIVSVLIER-AKLLQHEDEELESGMIRMMNKEKHTALHE 121
           +N   +     L +A      ++   LIE  A              +R+ +K     LH 
Sbjct: 100 LNKITNQGVTCLHLAVGKKWFEVSQFLIENGAS-------------VRIKDKFNQIPLHR 146

Query: 122 AVFHKIVDVVKILTREDLDYPYSANNYNKTPLCMVAEYEH 161
           A     + ++++L           +    TPL       H
Sbjct: 147 AASVGSLKLIELLCGLGKSAVNWQDKQGWTPLFHALAEGH 186

>1d9s_A Cyclin-dependent kinase 4 inhibitor B; helix-turn-helix, ankyrin repeat, signaling protein; NMR {Mus musculus} SCOP: i.11.1.1 Length = 136

 Score = 39.7 bits (94), Expect = 8e-05
 Identities = 27/138 (19%), Positives = 45/138 (32%), Gaps = 40/138 (28%)

Query: 34  LFKAAAAGNLEPFKDMAREEILEICPSLLLQ----VNAK--GDSRSLLVAAKFGHCDIVS 87
           L  AAA G +E      R          LL+     NA      R + V    G   +  
Sbjct: 16  LATAAARGQVE----TVR---------QLLEAGADPNALNRFGRRPIQVMMM-GSAQVAE 61

Query: 88  VLIER-AKLLQHEDEELESGMIRMMNKEKHT-ALHEAVFHKIVDVVKILTRE--DLDYPY 143
           +L+   A+                 +    T  +H+A     +D + +L R    LD   
Sbjct: 62  LLLLHGAE-------------PNCADPATLTRPVHDAAREGFLDTLVVLHRAGARLD--- 105

Query: 144 SANNYNKTPLCMVAEYEH 161
             + + + P+ +  E  H
Sbjct: 106 VCDAWGRLPVDLAEEQGH 123

>1d9s_A Cyclin-dependent kinase 4 inhibitor B; helix-turn-helix, ankyrin repeat, signaling protein; NMR {Mus musculus} SCOP: i.11.1.1 Length = 136

 Score = 37.4 bits (88), Expect = 5e-04
 Identities = 15/82 (18%), Positives = 26/82 (31%), Gaps = 21/82 (25%)

Query: 61  LLLQ----VNAK---GDSRSLLVAAKFGHCDIVSVLIER-AKLLQHEDEELESGMIRMMN 112
           LLL      N       +R +  AA+ G  D + VL    A+             + + +
Sbjct: 62  LLLLHGAEPNCADPATLTRPVHDAAREGFLDTLVVLHRAGAR-------------LDVCD 108

Query: 113 KEKHTALHEAVFHKIVDVVKIL 134
                 +  A      D+ + L
Sbjct: 109 AWGRLPVDLAEEQGHRDIARYL 130

>2y1l_E Darpin-8.4; hydrolase-inhibitor complex, DEVD darpin, ankyrin repeat Pro ribosome display, apoptosis; 1.80A {Synthetic source} PDB: 3noc_D* 4dx5_D* 2j8s_D* 4dx6_D* 4dx7_D* 3nog_D* 1mj0_A 1svx_A 2qyj_A 2bkg_A 2p2c_P 2bkk_B* 2v5q_C 2xee_A 2xeh_A 3q9n_C* 3q9u_C* Length = 169

 Score = 39.3 bits (93), Expect = 1e-04
 Identities = 22/89 (24%), Positives = 39/89 (43%), Gaps = 15/89 (16%)

Query: 74  LLVAAKFGHCDIVSVLIER-AKLLQHEDEELESGMIRMMNKEKHTALHEAVFHKIVDVVK 132
           LL AA+ G  D V +L+   A              +   +    T LH A F+  +++V+
Sbjct: 18  LLEAARAGRDDEVRILMANGAD-------------VNAEDASGWTPLHLAAFNGHLEIVE 64

Query: 133 ILTREDLDYPYSANNYNKTPLCMVAEYEH 161
           +L +   D   + ++   TPL + A + H
Sbjct: 65  VLLKNGAD-VNAVDHAGMTPLRLAALFGH 92

>2y1l_E Darpin-8.4; hydrolase-inhibitor complex, DEVD darpin, ankyrin repeat Pro ribosome display, apoptosis; 1.80A {Synthetic source} PDB: 3noc_D* 4dx5_D* 2j8s_D* 4dx6_D* 4dx7_D* 3nog_D* 1mj0_A 1svx_A 2qyj_A 2bkg_A 2p2c_P 2bkk_B* 2v5q_C 2xee_A 2xeh_A 3q9n_C* 3q9u_C* Length = 169

 Score = 39.3 bits (93), Expect = 2e-04
 Identities = 32/138 (23%), Positives = 52/138 (37%), Gaps = 40/138 (28%)

Query: 34  LFKAAAAGNLEPFKDMAREEILEICPSLLLQ---VNAKGDSRS--LLVAAKFGHCDIVSV 88
           L +AA AG  +          + I   L+     VNA+  S    L +AA  GH +IV V
Sbjct: 18  LLEAARAGRDD---------EVRI---LMANGADVNAEDASGWTPLHLAAFNGHLEIVEV 65

Query: 89  LIER-----AKLLQHEDEELESGMIRMMNKEKHTALHEAVFHKIVDVVKILTREDLDYPY 143
           L++      A                  +    T L  A     +++V++L +   D   
Sbjct: 66  LLKNGADVNAV-----------------DHAGMTPLRLAALFGHLEIVEVLLKNGAD-VN 107

Query: 144 SANNYNKTPLCMVAEYEH 161
           + +    TPL + A + H
Sbjct: 108 ANDMEGHTPLHLAAMFGH 125

>2y1l_E Darpin-8.4; hydrolase-inhibitor complex, DEVD darpin, ankyrin repeat Pro ribosome display, apoptosis; 1.80A {Synthetic source} PDB: 3noc_D* 4dx5_D* 2j8s_D* 4dx6_D* 4dx7_D* 3nog_D* 1mj0_A 1svx_A 2qyj_A 2bkg_A 2p2c_P 2bkk_B* 2v5q_C 2xee_A 2xeh_A 3q9n_C* 3q9u_C* Length = 169

 Score = 38.1 bits (90), Expect = 4e-04
 Identities = 25/100 (25%), Positives = 44/100 (44%), Gaps = 17/100 (17%)

Query: 65  VNAKGDSRS--LLVAAKFGHCDIVSVLIER-AKLLQHEDEELESGMIRMMNKEKHTALHE 121
           VNA   +    L +AA FGH +IV VL++  A              +   + E HT LH 
Sbjct: 73  VNAVDHAGMTPLRLAALFGHLEIVEVLLKNGAD-------------VNANDMEGHTPLHL 119

Query: 122 AVFHKIVDVVKILTREDLDYPYSANNYNKTPLCMVAEYEH 161
           A     +++V++L +   D   + + + KT   +  +  +
Sbjct: 120 AAMFGHLEIVEVLLKNGAD-VNAQDKFGKTAFDISIDNGN 158

>2vge_A RELA-associated inhibitor; iaspp, nucleus, apoptosis, repressor, cytoplasm, phosphorylation, P53 binding protein, ANK repeat, SH3 domain; 2.10A {Homo sapiens} Length = 229

 Score = 39.6 bits (93), Expect = 2e-04
 Identities = 20/91 (21%), Positives = 33/91 (36%), Gaps = 19/91 (20%)

Query: 74  LLVAAKFGHCDIVSVLIER-AKLLQHEDEELESGMIRMMNKEKHTALHEAVFHKIVDVVK 132
           LL AA  G  ++V   ++                     N+E  TALH A+      +V 
Sbjct: 25  LLDAALTGELEVVQQAVKEMND-------------PSQPNEEGITALHNAICGANYSIVD 71

Query: 133 ILTRE--DLDYPYSANNYNKTPLCMVAEYEH 161
            L     +++   S +++  TPL   A    
Sbjct: 72  FLITAGANVN---SPDSHGWTPLHCAASCND 99

>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A Length = 253

 Score = 39.8 bits (94), Expect = 2e-04
 Identities = 21/100 (21%), Positives = 33/100 (33%), Gaps = 17/100 (17%)

Query: 65  VNAKGDSRS--LLVAAKFGHCDIVSVLIER-AKLLQHEDEELESGMIRMMNKEKHTALHE 121
           VNA  D     L  AA   + D   VL++  A                M N  + T L  
Sbjct: 150 VNAVDDLGKSALHWAAAVNNVDAAVVLLKNGAN-------------KDMQNNREETPLFL 196

Query: 122 AVFHKIVDVVKILTREDLDYPYSANNYNKTPLCMVAEYEH 161
           A      +  K+L     +     ++ ++ P  +  E  H
Sbjct: 197 AAREGSYETAKVLLDHFAN-RDITDHMDRLPRDIAQERMH 235

>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A Length = 253

 Score = 38.6 bits (91), Expect = 4e-04
 Identities = 29/156 (18%), Positives = 50/156 (32%), Gaps = 54/156 (34%)

Query: 20  DNNGEISQLQIDPNLFKAAAAGNLEPFKDMAREEILEICPSLLLQ-----VNAKGDSRS- 73
           DN G          L  A +A     F+             +L++     ++A+    + 
Sbjct: 87  DNMGRTP-------LHAAVSADAQGVFQ-------------ILIRNRATDLDARMHDGTT 126

Query: 74  -LLVAAKFGHCDIVSVLIER-----AKLLQHEDEELESGMIRMMNKEKHTALHEAVFHKI 127
            L++AA+     ++  LI       A                  +    +ALH A     
Sbjct: 127 PLILAARLAVEGMLEDLINSHADVNAV-----------------DDLGKSALHWAAAVNN 169

Query: 128 VDVVKILTRE--DLDYPYSANNYNKTPLCMVAEYEH 161
           VD   +L +   + D     NN  +TPL + A    
Sbjct: 170 VDAAVVLLKNGANKD---MQNNREETPLFLAAREGS 202

>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B Length = 156

 Score = 38.9 bits (92), Expect = 2e-04
 Identities = 21/107 (19%), Positives = 38/107 (35%), Gaps = 32/107 (29%)

Query: 34  LFKAAAAGNLEPFKDMAREEILEICPSLLLQ----VNAKGDSRS--LLVAAKFGHCDIVS 87
           +  AA  G L+          L+    +L++    VN    + +  + +A + GH  +VS
Sbjct: 72  VHDAARTGFLD---------TLK----VLVEHGADVNVPDGTGALPIHLAVQEGHTAVVS 118

Query: 88  VLIERAKLLQHEDEELESGMIRMMNKEKHTALHEAVFHKIVDVVKIL 134
            L   +              +   +    T L  A+     D+V IL
Sbjct: 119 FLAAESD-------------LHRRDARGLTPLELALQRGAQDLVDIL 152

>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B Length = 156

 Score = 38.5 bits (91), Expect = 3e-04
 Identities = 28/125 (22%), Positives = 41/125 (32%), Gaps = 30/125 (24%)

Query: 55  LEICPSLLLQ---VNAKGDSRS--LLVAAKFGHCDIVSVLIER-AKLLQHEDEELESGMI 108
             I   LL Q    N +  S +  +  AA+ G  D + VL+E  A              +
Sbjct: 48  TAIALELLKQGASPNVQDTSGTSPVHDAARTGFLDTLKVLVEHGAD-------------V 94

Query: 109 RMMNKEKHTALHEAVFHKIVDVVKILTRE-DLDYPYSANNYNKTPLCMVAEYEHS----- 162
            + +      +H AV      VV  L  E DL      +    TPL +  +         
Sbjct: 95  NVPDGTGALPIHLAVQEGHTAVVSFLAAESDLH---RRDARGLTPLELALQRGAQDLVDI 151

Query: 163 --SHM 165
              HM
Sbjct: 152 LQGHM 156

>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A Length = 231

 Score = 39.5 bits (92), Expect = 2e-04
 Identities = 21/122 (17%), Positives = 34/122 (27%), Gaps = 28/122 (22%)

Query: 50  AREEILEICPSLLLQ---VNAKGDSRS--LLVAAKFGHCDIVSVLIER-----AKLLQHE 99
              ++ E+   +L                L  A   GH +IV  L++       K     
Sbjct: 15  YSGKLDELKERILADKSLATRTDQDSRTALHWACSAGHTEIVEFLLQLGVPVNDK----- 69

Query: 100 DEELESGMIRMMNKEKHTALHEAVFHKIVDVVKILTREDLDYPYSANNYNKTPLCMVAEY 159
                       +    + LH A      ++VK L  +      + N    TPL   A  
Sbjct: 70  ------------DDAGWSPLHIAASAGXDEIVKALLVKGAH-VNAVNQNGCTPLHYAASK 116

Query: 160 EH 161
             
Sbjct: 117 NR 118

>3aaa_C Myotrophin, protein V-1; actin capping protein, barbed END capping, inhibition, prote binding, actin capping, actin-binding, cytoskeleton, ANK RE; 2.20A {Homo sapiens} PDB: 1myo_A 2kxp_C 2myo_A Length = 123

 Score = 38.1 bits (90), Expect = 3e-04
 Identities = 15/102 (14%), Positives = 31/102 (30%), Gaps = 24/102 (23%)

Query: 65  VNAKGDSRSLLVAAKFGHCDIVSVLIER-----AKLLQHEDEELESGMIRMMNKEKHTAL 119
           + +  D    + A K G  D V   + +                         +     L
Sbjct: 3   LGSMCDK-EFMWALKNGDLDEVKDYVAKGEDVNRT-----------------LEGGRKPL 44

Query: 120 HEAVFHKIVDVVKILTREDLDYPYSANNYNKTPLCMVAEYEH 161
           H A     +++++ L  +  D   + + ++ TPL       H
Sbjct: 45  HYAADCGQLEILEFLLLKGAD-INAPDKHHITPLLSAVYEGH 85

>1n0q_A 3ANK, 3 ankyrin repeats; structural protein; 1.26A {} SCOP: k.37.1.1 Length = 93

 Score = 36.9 bits (87), Expect = 3e-04
 Identities = 24/91 (26%), Positives = 42/91 (46%), Gaps = 19/91 (20%)

Query: 74  LLVAAKFGHCDIVSVLIER-AKLLQHEDEELESGMIRMMNKEKHTALHEAVFHKIVDVVK 132
           L +AA+ GH ++V +L+E  A              +   +K   T LH A  +  ++VVK
Sbjct: 6   LHLAARNGHLEVVKLLLEAGAD-------------VNAKDKNGRTPLHLAARNGHLEVVK 52

Query: 133 ILTRE--DLDYPYSANNYNKTPLCMVAEYEH 161
           +L     D++   + +   +TPL + A   H
Sbjct: 53  LLLEAGADVN---AKDKNGRTPLHLAARNGH 80

>2l6b_A NR1C; ankyrin, consensus, repeat protein, ising model, DE NOV; NMR {Escherichia coli} Length = 115

 Score = 37.0 bits (87), Expect = 5e-04
 Identities = 21/92 (22%), Positives = 40/92 (43%), Gaps = 17/92 (18%)

Query: 65  VNAKGDSRS--LLVAAKFGHCDIVSVLIER-AKLLQHEDEELESGMIRMMNKEKHTALHE 121
           VNA+    +  L +AAK GH +IV +L+ + A              +   +K+ +T  H 
Sbjct: 35  VNARSKDGNTPLHLAAKNGHAEIVKLLLAKGAD-------------VNARSKDGNTPEHL 81

Query: 122 AVFHKIVDVVKILTREDLDYPYSANNYNKTPL 153
           A  +   ++VK+L  +  D   + +  +    
Sbjct: 82  AKKNGHHEIVKLLDAKGAD-VNARSWGSSHHH 112

>2l6b_A NR1C; ankyrin, consensus, repeat protein, ising model, DE NOV; NMR {Escherichia coli} Length = 115

 Score = 36.6 bits (86), Expect = 6e-04
 Identities = 21/89 (23%), Positives = 37/89 (41%), Gaps = 15/89 (16%)

Query: 74  LLVAAKFGHCDIVSVLIER-AKLLQHEDEELESGMIRMMNKEKHTALHEAVFHKIVDVVK 132
           L  AAK GH + V  L+ + A              +   +K+ +T LH A  +   ++VK
Sbjct: 13  LHNAAKNGHAEEVKKLLSKGAD-------------VNARSKDGNTPLHLAAKNGHAEIVK 59

Query: 133 ILTREDLDYPYSANNYNKTPLCMVAEYEH 161
           +L  +  D   + +    TP  +  +  H
Sbjct: 60  LLLAKGAD-VNARSKDGNTPEHLAKKNGH 87

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	179
4gpm_A	169	Engineered protein OR264; de novo protein, structu	99.98
4gpm_A	169	Engineered protein OR264; de novo protein, structu	99.97
1d9s_A	136	Cyclin-dependent kinase 4 inhibitor B; helix-turn-	99.96
2jab_A	136	H10-2-G3; HER2, darpin, ankyrin repeat protein, me	99.96
3twr_A	165	Tankyrase-2; ankyrin repeat, protein-protein inter	99.96
2y1l_E	169	Darpin-8.4; hydrolase-inhibitor complex, DEVD darp	99.96
3v31_A	167	Ankyrin repeat family A protein 2; structural geno	99.96
1n0r_A	126	4ANK, 4 ankyrin repeats; structural protein; 1.50A	99.96
4b93_B	269	Ankyrin repeat domain-containing protein 27; endoc	99.96
3v30_A	172	DNA-binding protein rfxank; structural genomics co	99.95
3f6q_A	179	Integrin-linked protein kinase; ILK, integrin-link	99.95
1bi7_B	156	P16INK4A, MTS1, multiple tumor suppressor; cyclin	99.95
2rfm_A	192	Putative ankyrin repeat protein TV1425; ANK repeat	99.95
1awc_B	153	Protein (GA binding protein beta 1); complex (tran	99.95
1ihb_A	162	P18-INK4C(INK6), cyclin-dependent kinase 6 inhibit	99.95
2y1l_E	169	Darpin-8.4; hydrolase-inhibitor complex, DEVD darp	99.95
3v30_A	172	DNA-binding protein rfxank; structural genomics co	99.95
1ihb_A	162	P18-INK4C(INK6), cyclin-dependent kinase 6 inhibit	99.95
2rfa_A	232	Transient receptor potential cation channel subfa	99.95
3f6q_A	179	Integrin-linked protein kinase; ILK, integrin-link	99.94
2vge_A	229	RELA-associated inhibitor; iaspp, nucleus, apoptos	99.94
2f8y_A	223	Notch homolog 1, translocation-associated (drosoph	99.94
3aji_A	231	26S proteasome non-ATPase regulatory subunit 10; g	99.94
1ikn_D	236	Protein (I-kappa-B-alpha), protein (NF-kappa-B P50	99.94
1awc_B	153	Protein (GA binding protein beta 1); complex (tran	99.94
3v31_A	167	Ankyrin repeat family A protein 2; structural geno	99.94
2rfm_A	192	Putative ankyrin repeat protein TV1425; ANK repeat	99.94
1yyh_A	253	HN1;, notch 1, ankyrin domain; ankyrin repeats, ce	99.94
1bd8_A	156	P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyr	99.94
2dzn_A	228	Probable 26S proteasome regulatory subunit P28; an	99.94
1oy3_D	282	Transcription factor inhibitor I-kappa-B-beta; pro	99.94
1oy3_D	282	Transcription factor inhibitor I-kappa-B-beta; pro	99.94
3aji_A	231	26S proteasome non-ATPase regulatory subunit 10; g	99.94
3twr_A	165	Tankyrase-2; ankyrin repeat, protein-protein inter	99.94
1bd8_A	156	P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyr	99.94
1s70_B	299	130 kDa myosin-binding subunit of smooth muscle my	99.94
1yyh_A	253	HN1;, notch 1, ankyrin domain; ankyrin repeats, ce	99.94
2pnn_A	273	Transient receptor potential cation channel subfa	99.94
2xai_A	261	ASB-9, ankyrin repeat and SOCS box protein 9; tran	99.94
2f8y_A	223	Notch homolog 1, translocation-associated (drosoph	99.94
4b93_B	269	Ankyrin repeat domain-containing protein 27; endoc	99.94
3hra_A	201	Ankyrin repeat family protein; structural protein;	99.94
1ycs_B	239	53BP2, P53BP2; ankyrin repeats, SH3, tumor suppres	99.93
1k1a_A	241	B-cell lymphoma 3-encoded protein; BCL-3, NF-kappa	99.93
3c5r_A	137	BARD-1, BRCA1-associated ring domain protein 1; an	99.93
3b7b_A	237	Euchromatic histone-lysine N-methyltransferase 1;	99.93
2rfa_A	232	Transient receptor potential cation channel subfa	99.93
1ikn_D	236	Protein (I-kappa-B-alpha), protein (NF-kappa-B P50	99.93
3hra_A	201	Ankyrin repeat family protein; structural protein;	99.93
3utm_A	351	Tankyrase-1; tankyrase, TNKS, ankryin repeat clust	99.93
2xai_A	261	ASB-9, ankyrin repeat and SOCS box protein 9; tran	99.93
3b7b_A	237	Euchromatic histone-lysine N-methyltransferase 1;	99.93
3jxi_A	260	Vanilloid receptor-related osmotically activated p	99.93
4hbd_A	276	KN motif and ankyrin repeat domain-containing Pro;	99.93
2etb_A	256	Transient receptor potential cation channel subfam	99.93
3utm_A	351	Tankyrase-1; tankyrase, TNKS, ankryin repeat clust	99.93
3aaa_C	123	Myotrophin, protein V-1; actin capping protein, ba	99.93
3lvq_E	497	ARF-GAP with SH3 domain, ANK repeat and PH domain	99.93
3d9h_A	285	CDNA FLJ77766, highly similar to HOMO sapiens anky	99.93
1n0q_A	93	3ANK, 3 ankyrin repeats; structural protein; 1.26A	99.93
3ehr_A	222	Osteoclast-stimulating factor 1; beta barrel, heli	99.93
2dzn_A	228	Probable 26S proteasome regulatory subunit P28; an	99.93
1ycs_B	239	53BP2, P53BP2; ankyrin repeats, SH3, tumor suppres	99.93
1dcq_A	278	PYK2-associated protein beta; zinc-binding module,	99.93
1k1a_A	241	B-cell lymphoma 3-encoded protein; BCL-3, NF-kappa	99.93
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	99.93
3kea_A	285	K1L; tropism, ANK repeat, viral protein; 2.30A {Va	99.93
1s70_B	299	130 kDa myosin-binding subunit of smooth muscle my	99.93
1wdy_A	285	2-5A-dependent ribonuclease; hydrolase, RNA-bindin	99.93
3ljn_A	364	Hypothetical protein; ankyrin, structural genomics	99.93
1wdy_A	285	2-5A-dependent ribonuclease; hydrolase, RNA-bindin	99.93
4g8k_A	337	2-5A-dependent ribonuclease; ankyrin-repeat domain	99.92
2etb_A	256	Transient receptor potential cation channel subfam	99.92
3d9h_A	285	CDNA FLJ77766, highly similar to HOMO sapiens anky	99.92
3ljn_A	364	Hypothetical protein; ankyrin, structural genomics	99.92
1sw6_A	327	Regulatory protein SWI6; transcription regulation,	99.92
3kea_A	285	K1L; tropism, ANK repeat, viral protein; 2.30A {Va	99.92
2b0o_E	301	UPLC1; arfgap, structural genomics, structural gen	99.92
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	99.92
2pnn_A	273	Transient receptor potential cation channel subfa	99.92
4hbd_A	276	KN motif and ankyrin repeat domain-containing Pro;	99.92
3jxi_A	260	Vanilloid receptor-related osmotically activated p	99.92
3eu9_A	240	Huntingtin-interacting protein 14; epigenetics, an	99.92
3deo_A	183	Signal recognition particle 43 kDa protein; chloro	99.91
3ui2_A	244	Signal recognition particle 43 kDa protein, chlor;	99.91
4g8k_A	337	2-5A-dependent ribonuclease; ankyrin-repeat domain	99.91
3jue_A	368	Arfgap with coiled-coil, ANK repeat and PH domain	99.91
3t8k_A	186	Uncharacterized protein; structural genomics, PSI-	99.91
3c5r_A	137	BARD-1, BRCA1-associated ring domain protein 1; an	99.9
3t8k_A	186	Uncharacterized protein; structural genomics, PSI-	99.9
2fo1_E	373	LIN-12 protein; beta-barrel, protein-DNA complex,	99.9
2fo1_E	373	LIN-12 protein; beta-barrel, protein-DNA complex,	99.9
3eu9_A	240	Huntingtin-interacting protein 14; epigenetics, an	99.9
1d9s_A	136	Cyclin-dependent kinase 4 inhibitor B; helix-turn-	99.9
3aaa_C	123	Myotrophin, protein V-1; actin capping protein, ba	99.9
2l6b_A	115	NR1C; ankyrin, consensus, repeat protein, ising mo	99.89
2vge_A	229	RELA-associated inhibitor; iaspp, nucleus, apoptos	99.88
1n0q_A	93	3ANK, 3 ankyrin repeats; structural protein; 1.26A	99.88
2jab_A	136	H10-2-G3; HER2, darpin, ankyrin repeat protein, me	99.88
1n0r_A	126	4ANK, 4 ankyrin repeats; structural protein; 1.50A	99.87
3ehr_A	222	Osteoclast-stimulating factor 1; beta barrel, heli	99.87
2zgd_A	110	3 repeat synthetic ankyrin; ankyrin repeat, hydrox	99.86
1bi7_B	156	P16INK4A, MTS1, multiple tumor suppressor; cyclin	99.86
3deo_A	183	Signal recognition particle 43 kDa protein; chloro	99.85
2aja_A	376	Ankyrin repeat family protein; NESG, Q5ZSV0, struc	99.85
2l6b_A	115	NR1C; ankyrin, consensus, repeat protein, ising mo	99.85
3ui2_A	244	Signal recognition particle 43 kDa protein, chlor;	99.84
1sw6_A	327	Regulatory protein SWI6; transcription regulation,	99.84
2b0o_E	301	UPLC1; arfgap, structural genomics, structural gen	99.82
2aja_A	376	Ankyrin repeat family protein; NESG, Q5ZSV0, struc	99.79
2zgd_A	110	3 repeat synthetic ankyrin; ankyrin repeat, hydrox	99.78
3jue_A	368	Arfgap with coiled-coil, ANK repeat and PH domain	99.77
1dcq_A	278	PYK2-associated protein beta; zinc-binding module,	99.76
3lvq_E	497	ARF-GAP with SH3 domain, ANK repeat and PH domain	99.75

>4gpm_A Engineered protein OR264; de novo protein, structural genomics, PSI-biology, northeast structural genomics consortium, NESG; 2.00A {Synthetic construct} PDB: 4gmr_A

Probab=99.98  E-value=3.5e-31  Score=180.33  Aligned_cols=132  Identities=24%  Similarity=0.283  Sum_probs=115.7

Q ss_pred             ccccCCHHHHHHHHcCChHHHHHHHHHHHHhhCcccccccCCCCCcHHHHHHHHcCCHHHHHHHHHhhcccCCchhhhhh
Q 042183           26 SQLQIDPNLFKAAAAGNLEPFKDMAREEILEICPSLLLQVNAKGDSRSLLVAAKFGHCDIVSVLIERAKLLQHEDEELES  105 (179)
Q Consensus        26 ~~~~~~~~l~~A~~~g~~~~~~~ll~~~~~~~~~~~~~~~~~~g~t~~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~~~  105 (179)
                      ......+|||.|+..++.+.++.|++      .+..++.+|..|.| |||+|+..|+.+++++|+++|++++.       
T Consensus        33 ~d~~g~t~l~~a~~~~~~~~~~~ll~------~gad~~~~d~~g~T-pLh~A~~~g~~~~v~~Ll~~gadvn~-------   98 (169)
T 4gpm_A           33 SDSDGRTPLHHAAENGHKEVVKLLIS------KGADVNAKDSDGRT-PLHHAAENGHKEVVKLLISKGADVNA-------   98 (169)
T ss_dssp             CCTTSCCHHHHHHHTTCHHHHHHHHH------TTCCTTCCCTTSCC-HHHHHHHTTCHHHHHHHHHTTCCTTC-------
T ss_pred             cCCCCCCHHHHHHHcCCHHHHHHHHh------cccchhhhccCCCC-HHHHHHHcCCHHHHHHHHHCcCCCCC-------
Confidence            34456688999999999999988887      67788889999999 99999999999999999999998877       


Q ss_pred             HHHHhccCCCCcHHHHHHHcCCHHHHHHHHhcCCCCCCCCCCCCCCHHHHHHHhcCCHHHHHHHHhcCCCCCC
Q 042183          106 GMIRMMNKEKHTALHEAVFHKIVDVVKILTREDLDYPYSANNYNKTPLCMVAEYEHSSHMVVAILKNCTSVSH  178 (179)
Q Consensus       106 ~~~~~~~~~g~t~l~~A~~~g~~~~~~~Ll~~~~~~~~~~~~~g~tpl~~A~~~~~~~~~~~~Ll~~g~~~~~  178 (179)
                           +|..|+||||+|+..|+.+++++|++.|++++ .+|..|+|||++|+. .|+.+++++|+++|+++++
T Consensus        99 -----~d~~G~TpLh~A~~~g~~~~v~~Ll~~gad~~-~~d~~G~TpL~~A~~-~g~~~iv~~Ll~~GA~ie~  164 (169)
T 4gpm_A           99 -----KDSDGRTPLHHAAENGHKEVVKLLISKGADVN-TSDSDGRTPLDLARE-HGNEEVVKLLEKQGGWLEH  164 (169)
T ss_dssp             -----CCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTT-CCCTTSCCHHHHHHH-TTCHHHHHHHHTC------
T ss_pred             -----CCCCCCCHHHHHHHcCCHHHHHHHHHcCCCcc-ccCCCCCCHHHHHHH-cCCHHHHHHHHHCCCCcCC
Confidence                 99999999999999999999999999999986 899999999999999 9999999999999999874

>4gpm_A Engineered protein OR264; de novo protein, structural genomics, PSI-biology, northeast structural genomics consortium, NESG; 2.00A {Synthetic construct} PDB: 4gmr_A

Probab=99.97  E-value=1.8e-30  Score=176.82  Aligned_cols=128  Identities=25%  Similarity=0.354  Sum_probs=121.3

Q ss_pred             CCHHHHHHHHcCChHHHHHHHHHHHHhhCcccccccCCCCCcHHHHHHHHcCCHHHHHHHHHhhcccCCchhhhhhHHHH
Q 042183           30 IDPNLFKAAAAGNLEPFKDMAREEILEICPSLLLQVNAKGDSRSLLVAAKFGHCDIVSVLIERAKLLQHEDEELESGMIR  109 (179)
Q Consensus        30 ~~~~l~~A~~~g~~~~~~~ll~~~~~~~~~~~~~~~~~~g~t~~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~~~~~~~  109 (179)
                      ..++|+.||+.|+.+.|+.|++      .+.+++.+|..|.| |||+|+..++.+++++|++.|++++.           
T Consensus         4 lg~~L~~Aa~~G~~~~v~~Ll~------~Gadvn~~d~~g~t-~l~~a~~~~~~~~~~~ll~~gad~~~-----------   65 (169)
T 4gpm_A            4 LGKRLIEAAENGNKDRVKDLIE------NGADVNASDSDGRT-PLHHAAENGHKEVVKLLISKGADVNA-----------   65 (169)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHH------TTCCTTCCCTTSCC-HHHHHHHTTCHHHHHHHHHTTCCTTC-----------
T ss_pred             HHHHHHHHHHcCCHHHHHHHHH------CCCCCCCcCCCCCC-HHHHHHHcCCHHHHHHHHhcccchhh-----------
Confidence            3467999999999999999998      67888999999999 99999999999999999999998887           


Q ss_pred             hccCCCCcHHHHHHHcCCHHHHHHHHhcCCCCCCCCCCCCCCHHHHHHHhcCCHHHHHHHHhcCCCCCC
Q 042183          110 MMNKEKHTALHEAVFHKIVDVVKILTREDLDYPYSANNYNKTPLCMVAEYEHSSHMVVAILKNCTSVSH  178 (179)
Q Consensus       110 ~~~~~g~t~l~~A~~~g~~~~~~~Ll~~~~~~~~~~~~~g~tpl~~A~~~~~~~~~~~~Ll~~g~~~~~  178 (179)
                       ++..|+||||+|+..|+.+++++|++.|++++ .+|..|+||||+|+. .|+.+++++|+++|++++.
T Consensus        66 -~d~~g~TpLh~A~~~g~~~~v~~Ll~~gadvn-~~d~~G~TpLh~A~~-~g~~~~v~~Ll~~gad~~~  131 (169)
T 4gpm_A           66 -KDSDGRTPLHHAAENGHKEVVKLLISKGADVN-AKDSDGRTPLHHAAE-NGHKEVVKLLISKGADVNT  131 (169)
T ss_dssp             -CCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTT-CCCTTSCCHHHHHHH-TTCHHHHHHHHHTTCCTTC
T ss_pred             -hccCCCCHHHHHHHcCCHHHHHHHHHCcCCCC-CCCCCCCCHHHHHHH-cCCHHHHHHHHHcCCCccc
Confidence             99999999999999999999999999999987 899999999999999 9999999999999999865

>1d9s_A Cyclin-dependent kinase 4 inhibitor B; helix-turn-helix, ankyrin repeat, signaling protein; NMR {Mus musculus} SCOP: i.11.1.1

Probab=99.96  E-value=3.6e-29  Score=164.45  Aligned_cols=127  Identities=15%  Similarity=0.213  Sum_probs=118.8

Q ss_pred             cccCCHHHHHHHHcCChHHHHHHHHHHHHhhCcccccccCCCCCcHHHHHHHHcCCHHHHHHHHHhhcccCCchhhhhhH
Q 042183           27 QLQIDPNLFKAAAAGNLEPFKDMAREEILEICPSLLLQVNAKGDSRSLLVAAKFGHCDIVSVLIERAKLLQHEDEELESG  106 (179)
Q Consensus        27 ~~~~~~~l~~A~~~g~~~~~~~ll~~~~~~~~~~~~~~~~~~g~t~~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~~~~  106 (179)
                      .....++||.|+..|+.++++.|++      .+..++.+|..|.| |||+|+. |+.+++++|++++++++.        
T Consensus         9 ~~~g~t~L~~A~~~~~~~~v~~Ll~------~g~~~~~~~~~g~t-~L~~A~~-~~~~~v~~Ll~~g~~~~~--------   72 (136)
T 1d9s_A            9 GGSSDAGLATAAARGQVETVRQLLE------AGADPNALNRFGRR-PIQVMMM-GSAQVAELLLLHGAEPNC--------   72 (136)
T ss_dssp             CCCCSCHHHHHHHTTCHHHHHHHHH------TTCCTTCCCTTCCT-TTTTSTT-SCHHHHHHHHHHTCCSSC--------
T ss_pred             CCCCccHHHHHHHcCCHHHHHHHHH------cCCCcCCcCCCCCC-HHHHHHc-CCHHHHHHHHHCCCCCCC--------
Confidence            4456689999999999999999998      56778889999999 9999999 999999999999998887        


Q ss_pred             HHHhccCC-CCcHHHHHHHcCCHHHHHHHHhcCCCCCCCCCCCCCCHHHHHHHhcCCHHHHHHHHhcCCC
Q 042183          107 MIRMMNKE-KHTALHEAVFHKIVDVVKILTREDLDYPYSANNYNKTPLCMVAEYEHSSHMVVAILKNCTS  175 (179)
Q Consensus       107 ~~~~~~~~-g~t~l~~A~~~g~~~~~~~Ll~~~~~~~~~~~~~g~tpl~~A~~~~~~~~~~~~Ll~~g~~  175 (179)
                          ++.. |+||||+|+..|+.+++++|++.|++++ ..|..|.|||++|+. .++.+++++|+++|+|
T Consensus        73 ----~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~-~~d~~g~tpl~~A~~-~~~~~~~~~Ll~~Gad  136 (136)
T 1d9s_A           73 ----ADPATLTRPVHDAAREGFLDTLVVLHRAGARLD-VCDAWGRLPVDLAEE-QGHRDIARYLHAATGD  136 (136)
T ss_dssp             ----CBTTTTBCHHHHHHHHTCHHHHHHHHHTCCCCC-CCSSSSSCHHHHHHH-HTCHHHHHHHHHHHCC
T ss_pred             ----cCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCC-ccCCCCCCHHHHHHH-cCCHHHHHHHHHcCCC
Confidence                8888 9999999999999999999999999986 899999999999999 9999999999999986

>2jab_A H10-2-G3; HER2, darpin, ankyrin repeat protein, membrane protein, human epidermal growth factor receptor 2, de novo protein; 1.70A {} PDB: 3hg0_D 2xzt_G 2xzd_G 2y0b_G 2v4h_C

Probab=99.96  E-value=3.8e-28  Score=159.53  Aligned_cols=125  Identities=19%  Similarity=0.279  Sum_probs=116.3

Q ss_pred             ccCCHHHHHHHHcCChHHHHHHHHHHHHhhCcccccccCCCCCcHHHHHHHHcCCHHHHHHHHHhhcccCCchhhhhhHH
Q 042183           28 LQIDPNLFKAAAAGNLEPFKDMAREEILEICPSLLLQVNAKGDSRSLLVAAKFGHCDIVSVLIERAKLLQHEDEELESGM  107 (179)
Q Consensus        28 ~~~~~~l~~A~~~g~~~~~~~ll~~~~~~~~~~~~~~~~~~g~t~~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~~~~~  107 (179)
                      ....++||.|+..|+.+.++.|++      .+..++..|..|.| |||+|+..|+.+++++|++++++++.         
T Consensus        12 ~~~~t~l~~A~~~g~~~~v~~Ll~------~g~~~~~~~~~g~t-~L~~A~~~~~~~~v~~Ll~~g~~~~~---------   75 (136)
T 2jab_A           12 SDLGKKLLEAARAGQDDEVRILMA------NGADVNAKDEYGLT-PLYLATAHGHLEIVEVLLKNGADVNA---------   75 (136)
T ss_dssp             CHHHHHHHHHHHHTCHHHHHHHHH------TTCCTTCCCTTSCC-HHHHHHHHTCHHHHHHHHHTTCCTTC---------
T ss_pred             ccccHHHHHHHHhCCHHHHHHHHH------cCCCCCCcCCCCCC-HHHHHHHcCCHHHHHHHHHcCCCCCc---------
Confidence            345688999999999999999988      56778889999999 99999999999999999999998877         


Q ss_pred             HHhccCCCCcHHHHHHHcCCHHHHHHHHhcCCCCCCCCCCCCCCHHHHHHHhcCCHHHHHHHHhcC
Q 042183          108 IRMMNKEKHTALHEAVFHKIVDVVKILTREDLDYPYSANNYNKTPLCMVAEYEHSSHMVVAILKNC  173 (179)
Q Consensus       108 ~~~~~~~g~t~l~~A~~~g~~~~~~~Ll~~~~~~~~~~~~~g~tpl~~A~~~~~~~~~~~~Ll~~g  173 (179)
                         ++..|+||||+|+..|+.+++++|++.|++++ ..|..|.|||++|+. .|+.+++++|++.|
T Consensus        76 ---~d~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~-~~~~~g~tpl~~A~~-~~~~~~~~~Ll~~G  136 (136)
T 2jab_A           76 ---VDAIGFTPLHLAAFIGHLEIAEVLLKHGADVN-AQDKFGKTAFDISIG-NGNEDLAEILQKLN  136 (136)
T ss_dssp             ---CCTTCCCHHHHHHHHTCHHHHHHHHHTTCCTT-CCCTTSCCHHHHHHH-TTCHHHHHHHHHC-
T ss_pred             ---CCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCc-CcCCCCCCHHHHHHH-CCCHHHHHHHHHcC
Confidence               89999999999999999999999999999976 889999999999999 99999999999886

>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo sapiens} SCOP: d.211.1.0 PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A 3twq_A 3twu_A 2y0i_S*

Probab=99.96  E-value=1.7e-28  Score=165.99  Aligned_cols=134  Identities=19%  Similarity=0.272  Sum_probs=115.4

Q ss_pred             CccccCCHHHHHHHHcCChHHHHHHHHHHHHhhCcccccccCCCCCcHHHHHHHHcCCHHHHHHHHHhhcccCCchhhhh
Q 042183           25 ISQLQIDPNLFKAAAAGNLEPFKDMAREEILEICPSLLLQVNAKGDSRSLLVAAKFGHCDIVSVLIERAKLLQHEDEELE  104 (179)
Q Consensus        25 ~~~~~~~~~l~~A~~~g~~~~~~~ll~~~~~~~~~~~~~~~~~~g~t~~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~~  104 (179)
                      +......++|+.|++.|+.+.++.|++     ..+..++..+..|.| |||+|+..|+.+++++|++++.+++.      
T Consensus         3 ~~~~~~~~~l~~A~~~g~~~~v~~ll~-----~~~~~~~~~~~~g~t-~L~~A~~~~~~~~v~~Ll~~g~~~~~------   70 (165)
T 3twr_A            3 MGNSEADRQLLEAAKAGDVETVKKLCT-----VQSVNCRDIEGRQST-PLHFAAGYNRVSVVEYLLQHGADVHA------   70 (165)
T ss_dssp             ---CHHHHHHHHHHHHTCHHHHHHHCC-----TTTTTCCCTTTTCCC-HHHHHHHTTCHHHHHHHHHTTCCTTC------
T ss_pred             CCcchhhHHHHHHHHhCCHHHHHHHHH-----cCCCCccccccCCCC-HHHHHHHcChHHHHHHHHhcCCCCCc------
Confidence            445556688999999999999988865     455566778888899 99999999999999999999988777      


Q ss_pred             hHHHHhccCCCCcHHHHHHHcCCHHHHHHHHhcCCCCCCCCCCCCCCHHHHHHHhcCCHHHHHHHHhcCCCCCC
Q 042183          105 SGMIRMMNKEKHTALHEAVFHKIVDVVKILTREDLDYPYSANNYNKTPLCMVAEYEHSSHMVVAILKNCTSVSH  178 (179)
Q Consensus       105 ~~~~~~~~~~g~t~l~~A~~~g~~~~~~~Ll~~~~~~~~~~~~~g~tpl~~A~~~~~~~~~~~~Ll~~g~~~~~  178 (179)
                            ++..|+||||+|+..|+.+++++|++.|++++ ..|..|.||||+|+. .|+.+++++|+++|++++.
T Consensus        71 ------~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~-~~~~~g~t~L~~A~~-~~~~~~v~~Ll~~ga~~~~  136 (165)
T 3twr_A           71 ------KDKGGLVPLHNACSYGHYEVAELLVKHGAVVN-VADLWKFTPLHEAAA-KGKYEICKLLLQHGADPTK  136 (165)
T ss_dssp             ------CCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTT-CCCTTCCCHHHHHHH-TTCHHHHHHHHHTTCCTTC
T ss_pred             ------cCCCCCCHHHHHHHcCcHHHHHHHHhCCCCCC-CcCCCCCCHHHHHHH-cCCHHHHHHHHHcCCCCcc
Confidence                  88899999999999999999999999999976 788899999999999 9999999999999988764

>2y1l_E Darpin-8.4; hydrolase-inhibitor complex, DEVD darpin, ankyrin repeat Pro ribosome display, apoptosis; 1.80A {Synthetic source} PDB: 3noc_D* 4dx5_D* 2j8s_D* 4dx6_D* 4dx7_D* 3nog_D* 1mj0_A 1svx_A 2qyj_A 2bkg_A 2p2c_P 2bkk_B* 2v5q_C 2xee_A 2xeh_A 3q9n_C* 3q9u_C*

Probab=99.96  E-value=6.9e-28  Score=163.79  Aligned_cols=132  Identities=23%  Similarity=0.282  Sum_probs=113.0

Q ss_pred             ccccCCHHHHHHHHcCChHHHHHHHHHHHHhhCcccccccCCCCCcHHHHHHHHcCCHHHHHHHHHhhcccCCchhhhhh
Q 042183           26 SQLQIDPNLFKAAAAGNLEPFKDMAREEILEICPSLLLQVNAKGDSRSLLVAAKFGHCDIVSVLIERAKLLQHEDEELES  105 (179)
Q Consensus        26 ~~~~~~~~l~~A~~~g~~~~~~~ll~~~~~~~~~~~~~~~~~~g~t~~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~~~  105 (179)
                      +.....++|+.|++.|+.++++.|++      .+..++..|..|.| |||+|+..|+.+++++|+++|.+.+.       
T Consensus        10 ~~~~~~~~l~~A~~~g~~~~v~~Ll~------~g~~~~~~~~~g~t-~L~~A~~~~~~~~v~~Ll~~g~~~~~-------   75 (169)
T 2y1l_E           10 HGSDLGKKLLEAARAGRDDEVRILMA------NGADVNAEDASGWT-PLHLAAFNGHLEIVEVLLKNGADVNA-------   75 (169)
T ss_dssp             ---CHHHHHHHHHHHTCHHHHHHHHH------TTCCTTCCCTTSCC-HHHHHHHTTCHHHHHHHHHTTCCTTC-------
T ss_pred             CCCcccchHHHHHHcCCHHHHHHHHH------CCCCCCCCCCCCCC-HHHHHHHcCCHHHHHHHHHcCCCCCc-------
Confidence            34445578999999999999999887      56677888889999 99999999999999999999887776       


Q ss_pred             HHHHhccCCCCcHHHHHHHcCCHHHHHHHHhcCCCCCCCCCCCCCCHHHHHHHhcCCHHHHHHHHhcCCCCCC
Q 042183          106 GMIRMMNKEKHTALHEAVFHKIVDVVKILTREDLDYPYSANNYNKTPLCMVAEYEHSSHMVVAILKNCTSVSH  178 (179)
Q Consensus       106 ~~~~~~~~~g~t~l~~A~~~g~~~~~~~Ll~~~~~~~~~~~~~g~tpl~~A~~~~~~~~~~~~Ll~~g~~~~~  178 (179)
                           ++..|.||||+|+..|+.+++++|++.|++++ ..|..|.||||+|+. .|+.+++++|+++|++++.
T Consensus        76 -----~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~-~~~~~g~t~L~~A~~-~~~~~~v~~Ll~~g~~~~~  141 (169)
T 2y1l_E           76 -----VDHAGMTPLRLAALFGHLEIVEVLLKNGADVN-ANDMEGHTPLHLAAM-FGHLEIVEVLLKNGADVNA  141 (169)
T ss_dssp             -----CCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTT-CCCTTSCCHHHHHHH-TTCHHHHHHHHHTTCCTTC
T ss_pred             -----cCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCC-CCCCCCCCHHHHHHH-cCCHHHHHHHHHcCCCCCC
Confidence                 88889999999999999999999999998876 788889999999999 9999999999999888753

>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium, SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo sapiens} PDB: 3v2x_A 3v2o_A 3so8_A

Probab=99.96  E-value=8.5e-28  Score=162.86  Aligned_cols=125  Identities=20%  Similarity=0.243  Sum_probs=67.5

Q ss_pred             HHHHHHHHcCChHHHHHHHHHHHHhhCcccccccCCCCCcHHHHHHHHcCCHHHHHHHHHhhcccCCchhhhhhHHHHhc
Q 042183           32 PNLFKAAAAGNLEPFKDMAREEILEICPSLLLQVNAKGDSRSLLVAAKFGHCDIVSVLIERAKLLQHEDEELESGMIRMM  111 (179)
Q Consensus        32 ~~l~~A~~~g~~~~~~~ll~~~~~~~~~~~~~~~~~~g~t~~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~~~~~~~~~  111 (179)
                      ++||.|+..|+.+.++.|++      .+..++..|..|.| |||+|+..|+.+++++|++++.+++.            +
T Consensus         5 t~L~~A~~~g~~~~v~~ll~------~~~~~~~~~~~g~t-~L~~A~~~~~~~~v~~Ll~~g~~~~~------------~   65 (167)
T 3v31_A            5 LSVHQLAAQGEMLYLATRIE------QENVINHTDEEGFT-PLMWAAAHGQIAVVEFLLQNGADPQL------------L   65 (167)
T ss_dssp             CCHHHHHHTTCHHHHHHHHH------HSSCTTCCCTTSCC-HHHHHHHTTCHHHHHHHHHTTCCTTC------------C
T ss_pred             chHHHHHHCCCHHHHHHHHH------cCCCcCCCCCCCCC-HHHHHHHCCCHHHHHHHHHcCCCCCC------------c
Confidence            44555555555555555554      23344555555555 55555555555555555555554444            4


Q ss_pred             cCCCCcHHHHHHHcCCHHHHHHHHhcCCCCCCCCCCCCCCHHHHHHHhcCCHHHHHHHHhcCCCCC
Q 042183          112 NKEKHTALHEAVFHKIVDVVKILTREDLDYPYSANNYNKTPLCMVAEYEHSSHMVVAILKNCTSVS  177 (179)
Q Consensus       112 ~~~g~t~l~~A~~~g~~~~~~~Ll~~~~~~~~~~~~~g~tpl~~A~~~~~~~~~~~~Ll~~g~~~~  177 (179)
                      +..|.||||+|+..|+.+++++|++.|++++ ..|..|.||||+|+. .|+.+++++|+++|++++
T Consensus        66 ~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~-~~~~~g~t~L~~A~~-~~~~~~v~~Ll~~g~~~~  129 (167)
T 3v31_A           66 GKGRESALSLACSKGYTDIVKMLLDCGVDVN-EYDWNGGTPLLYAVH-GNHVKCVKMLLESGADPT  129 (167)
T ss_dssp             CTTCCCHHHHHHHHTCHHHHHHHHHHTCCTT-CCCTTSCCHHHHHHH-TTCHHHHHHHHHTTCCTT
T ss_pred             CCCCCcHHHHHHHcCCHHHHHHHHHCCCCCC-cCCCCCCCHHHHHHH-cCCHHHHHHHHHcCCCCC
Confidence            5555555555555555555555555555543 445555555555555 555555555555555443

>1n0r_A 4ANK, 4 ankyrin repeats; structural protein; 1.50A {} SCOP: k.37.1.1

Probab=99.96  E-value=1.2e-27  Score=154.43  Aligned_cols=125  Identities=26%  Similarity=0.317  Sum_probs=116.8

Q ss_pred             CCHHHHHHHHcCChHHHHHHHHHHHHhhCcccccccCCCCCcHHHHHHHHcCCHHHHHHHHHhhcccCCchhhhhhHHHH
Q 042183           30 IDPNLFKAAAAGNLEPFKDMAREEILEICPSLLLQVNAKGDSRSLLVAAKFGHCDIVSVLIERAKLLQHEDEELESGMIR  109 (179)
Q Consensus        30 ~~~~l~~A~~~g~~~~~~~ll~~~~~~~~~~~~~~~~~~g~t~~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~~~~~~~  109 (179)
                      ..++||.|+..|+.++++.|++      .+..++..+..|.| |||+|+..|+.+++++|++++.+++.           
T Consensus         2 g~t~L~~A~~~~~~~~v~~Ll~------~~~~~~~~~~~g~t-~L~~A~~~~~~~~~~~Ll~~g~~~~~-----------   63 (126)
T 1n0r_A            2 GRTPLHLAARNGHLEVVKLLLE------AGADVNAKDKNGRT-PLHLAARNGHLEVVKLLLEAGADVNA-----------   63 (126)
T ss_dssp             CCCHHHHHHHHTCHHHHHHHHH------HTCCTTCCCTTSCC-HHHHHHHHTCHHHHHHHHHTTCCTTC-----------
T ss_pred             CccHHHHHHHcCcHHHHHHHHH------cCCCCCCcCCCCCc-HHHHHHHcCcHHHHHHHHHcCCCCcc-----------
Confidence            3578999999999999999987      45667888999999 99999999999999999999998877           


Q ss_pred             hccCCCCcHHHHHHHcCCHHHHHHHHhcCCCCCCCCCCCCCCHHHHHHHhcCCHHHHHHHHhcCCC
Q 042183          110 MMNKEKHTALHEAVFHKIVDVVKILTREDLDYPYSANNYNKTPLCMVAEYEHSSHMVVAILKNCTS  175 (179)
Q Consensus       110 ~~~~~g~t~l~~A~~~g~~~~~~~Ll~~~~~~~~~~~~~g~tpl~~A~~~~~~~~~~~~Ll~~g~~  175 (179)
                       ++..|.||||+|+..|+.+++++|++.|+++. ..|..|.|||++|+. .|+.+++++|+++|+|
T Consensus        64 -~~~~g~t~l~~A~~~~~~~~~~~Ll~~g~~~~-~~~~~g~t~l~~A~~-~~~~~~~~~Ll~~Gad  126 (126)
T 1n0r_A           64 -KDKNGRTPLHLAARNGHLEVVKLLLEAGADVN-AKDKNGRTPLHLAAR-NGHLEVVKLLLEAGAY  126 (126)
T ss_dssp             -CCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTT-CCCTTSCCHHHHHHH-TTCHHHHHHHHHHTCC
T ss_pred             -cCCCCCcHHHHHHHcChHHHHHHHHHcCCCCc-ccCCCCCCHHHHHHH-cCcHHHHHHHHHcCCC
Confidence             89999999999999999999999999999976 889999999999999 9999999999999986

>4b93_B Ankyrin repeat domain-containing protein 27; endocytosis, exocytosis, snare; 2.00A {Homo sapiens}

Probab=99.96  E-value=1.5e-27  Score=173.66  Aligned_cols=132  Identities=20%  Similarity=0.146  Sum_probs=122.3

Q ss_pred             cccCCHHHHHHHHcCChHHHHHHHHHHHHhhCcccccccCCCCCcHHHHHHHHcCCHHHHHHHHHhhcccCCchhhhhhH
Q 042183           27 QLQIDPNLFKAAAAGNLEPFKDMAREEILEICPSLLLQVNAKGDSRSLLVAAKFGHCDIVSVLIERAKLLQHEDEELESG  106 (179)
Q Consensus        27 ~~~~~~~l~~A~~~g~~~~~~~ll~~~~~~~~~~~~~~~~~~g~t~~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~~~~  106 (179)
                      .....+|||.|+..|+.++++.|++      .+..++..+..|.| |+|+|+..++.+++++|++.|++++.        
T Consensus        83 d~~G~TpLh~A~~~g~~~~v~~Ll~------~~a~~~~~~~~g~t-~l~~a~~~~~~~~~~~Ll~~g~~~n~--------  147 (269)
T 4b93_B           83 SQDGSSPLHVAALHGRADLIPLLLK------HGANAGARNADQAV-PLHLACQQGHFQVVKCLLDSNAKPNK--------  147 (269)
T ss_dssp             CTTSCCHHHHHHHTTCTTHHHHHHH------TTCCTTCCCTTCCC-HHHHHHHHTCHHHHHHHHHTTCCSCC--------
T ss_pred             CCCCCCHHHHHHHcCcHHHHHHHHh------cCCCcCccCCCCCC-ccccccccChHHHHHHHHHCCCCCCC--------
Confidence            3445689999999999999999987      66778889999999 99999999999999999999998887        


Q ss_pred             HHHhccCCCCcHHHHHHHcCCHHHHHHHHhcCCCCCCCCCCCCCCHHHHHHHhcCCHHHHHHHHhcCCCCCCC
Q 042183          107 MIRMMNKEKHTALHEAVFHKIVDVVKILTREDLDYPYSANNYNKTPLCMVAEYEHSSHMVVAILKNCTSVSHR  179 (179)
Q Consensus       107 ~~~~~~~~g~t~l~~A~~~g~~~~~~~Ll~~~~~~~~~~~~~g~tpl~~A~~~~~~~~~~~~Ll~~g~~~~~r  179 (179)
                          +|..|+||||+|+..|+.+++++|++.|++++ ..+..|.||||+|+. .|+.+++++|+++|+|++.+
T Consensus       148 ----~d~~g~TpL~~A~~~g~~~~v~~Ll~~gadvn-~~~~~g~t~Lh~A~~-~g~~~~v~~Ll~~Gad~~~~  214 (269)
T 4b93_B          148 ----KDLSGNTPLIYACSGGHHELVALLLQHGASIN-ASNNKGNTALHEAVI-EKHVFVVELLLLHGASVQVL  214 (269)
T ss_dssp             ----CCTTCCCHHHHHHHTTCGGGHHHHHHTTCCTT-CBCTTSCBHHHHHHH-TTCHHHHHHHHHTTCCSCCC
T ss_pred             ----CCCCCCCHHHHHHHCCCHHHHHHHHHCCCCCC-ccccCCCcHHHHHHH-cCCHHHHHHHHHCCCCCCCc
Confidence                99999999999999999999999999999987 899999999999999 99999999999999998753

>3v30_A DNA-binding protein rfxank; structural genomics consortium, SGC, rfxank, ANK repeat, Pro binding; 1.57A {Homo sapiens} PDB: 3uxg_A

Probab=99.95  E-value=2e-27  Score=161.80  Aligned_cols=125  Identities=21%  Similarity=0.149  Sum_probs=85.7

Q ss_pred             CCHHHHHHHHcCChHHHHHHHHHHHHhhCcccccccCCCCCcHHHHHHHHcCCHHHHHHHHHhhcccCCchhhhhhHHHH
Q 042183           30 IDPNLFKAAAAGNLEPFKDMAREEILEICPSLLLQVNAKGDSRSLLVAAKFGHCDIVSVLIERAKLLQHEDEELESGMIR  109 (179)
Q Consensus        30 ~~~~l~~A~~~g~~~~~~~ll~~~~~~~~~~~~~~~~~~g~t~~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~~~~~~~  109 (179)
                      ..++||.|+..|+.++++.|++      .+..++..+..|.| |||+|+..|+.+++++|++++.+++.           
T Consensus        36 g~t~L~~A~~~~~~~~v~~Ll~------~g~~~~~~~~~g~t-~L~~A~~~~~~~~v~~Ll~~g~~~~~-----------   97 (172)
T 3v30_A           36 GFTPLIWASAFGEIETVRFLLE------WGADPHILAKERES-ALSLASTGGYTDIVGLLLERDVDINI-----------   97 (172)
T ss_dssp             SCCHHHHHHHTTCHHHHHHHHH------HTCCTTCCCTTCCC-HHHHHHHTTCHHHHHHHHTTTCCTTC-----------
T ss_pred             CCCHHHHHHHcCCHHHHHHHHH------cCCCchhhcccCCC-HHHHHHHCCCHHHHHHHHHcCCCCCC-----------
Confidence            4466777777777777766665      34455666666777 77777777777777777776666555           


Q ss_pred             hccCCCCcHHHHHHHcCCHHHHHHHHhcCCCCCCCCCCCCCCHHHHHHHhcCCHHHHHHHHhcCCC
Q 042183          110 MMNKEKHTALHEAVFHKIVDVVKILTREDLDYPYSANNYNKTPLCMVAEYEHSSHMVVAILKNCTS  175 (179)
Q Consensus       110 ~~~~~g~t~l~~A~~~g~~~~~~~Ll~~~~~~~~~~~~~g~tpl~~A~~~~~~~~~~~~Ll~~g~~  175 (179)
                       ++..|+||||+|+..|+.+++++|++.|+++. ..+..|.|||++|+. .|+.+++++|+++|++
T Consensus        98 -~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~-~~~~~g~t~l~~A~~-~~~~~~~~~L~~~~~~  160 (172)
T 3v30_A           98 -YDWNGGTPLLYAVRGNHVKCVEALLARGADLT-TEADSGYTPMDLAVA-LGYRKVQQVIENHILK  160 (172)
T ss_dssp             -CCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTT-CCCTTSCCHHHHHHH-HTCHHHHHHHHHHHHH
T ss_pred             -CCCCCCCHHHHHHHcCCHHHHHHHHHcCCCcc-ccCCCCCCHHHHHHH-hCcHHHHHHHHHHHHH
Confidence             66677777777777777777777777777755 666677777777777 7777777777776644

>3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 3ixe_A 2kbx_A

Probab=99.95  E-value=1.5e-27  Score=163.42  Aligned_cols=126  Identities=25%  Similarity=0.255  Sum_probs=88.5

Q ss_pred             HHHHHHHHcCChHHHHHHHHHHHHhhCcccccccCCCCCcHHHHHHHHcCCHHHHHHHHHhhcccCCchhhhhhHHHHhc
Q 042183           32 PNLFKAAAAGNLEPFKDMAREEILEICPSLLLQVNAKGDSRSLLVAAKFGHCDIVSVLIERAKLLQHEDEELESGMIRMM  111 (179)
Q Consensus        32 ~~l~~A~~~g~~~~~~~ll~~~~~~~~~~~~~~~~~~g~t~~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~~~~~~~~~  111 (179)
                      ++|+.|+..|+.+.++.|++     ..+..++..+..|.| |||+|+..|+.+++++|+++|++++.            +
T Consensus         7 ~~l~~A~~~g~~~~v~~ll~-----~~~~~~~~~~~~g~t-~L~~A~~~~~~~~v~~Ll~~g~~~~~------------~   68 (179)
T 3f6q_A            7 DDIFTQCREGNAVAVRLWLD-----NTENDLNQGDDHGFS-PLHWACREGRSAVVEMLIMRGARINV------------M   68 (179)
T ss_dssp             CCHHHHHHHTCHHHHHHHHH-----CTTSCTTCCCTTSCC-HHHHHHHTTCHHHHHHHHHTTCCTTC------------C
T ss_pred             HHHHHHHHcCCHHHHHHHHh-----cCcccccccCCCCCC-HHHHHHHcCcHHHHHHHHHcCCCCCC------------c
Confidence            45777777777777776665     335556667777777 77777777777777777777766655            6


Q ss_pred             cCCCCcHHHHHHHcCCHHHHHHHHhcCCCCCCCCCCCCCCHHHHHHHhcCCHHHHHHHHhcCCCCC
Q 042183          112 NKEKHTALHEAVFHKIVDVVKILTREDLDYPYSANNYNKTPLCMVAEYEHSSHMVVAILKNCTSVS  177 (179)
Q Consensus       112 ~~~g~t~l~~A~~~g~~~~~~~Ll~~~~~~~~~~~~~g~tpl~~A~~~~~~~~~~~~Ll~~g~~~~  177 (179)
                      +..|+||||+|+..|+.+++++|++.|++++ ..|..|.||||+|+. .|+.+++++|+++|++++
T Consensus        69 ~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~-~~d~~g~t~L~~A~~-~~~~~~v~~Ll~~ga~~~  132 (179)
T 3f6q_A           69 NRGDDTPLHLAASHGHRDIVQKLLQYKADIN-AVNEHGNVPLHYACF-WGQDQVAEDLVANGALVS  132 (179)
T ss_dssp             CTTCCCHHHHHHHTTCHHHHHHHHHTTCCTT-CCCTTSCCHHHHHHH-TTCHHHHHHHHHTTCCSS
T ss_pred             CCCCCCHHHHHHHcCCHHHHHHHHHcCCCCC-ccCCCCCCHHHHHHH-cCCHHHHHHHHHCCCCcc
Confidence            6677777777777777777777777777765 666777777777777 777777777777776654

>1bi7_B P16INK4A, MTS1, multiple tumor suppressor; cyclin dependent kinase, cyclin dependent kinase inhibitory protein, CDK, cell cycle; 3.40A {Homo sapiens} SCOP: d.211.1.1 PDB: 1a5e_A 1dc2_A 2a5e_A

Probab=99.95  E-value=1.5e-28  Score=164.99  Aligned_cols=128  Identities=15%  Similarity=0.187  Sum_probs=115.5

Q ss_pred             cCCHHHHHHHHcCChHHHHHHHHHHHHhhCcccccccCCCCCcHHHHHHHHcCCHHHHHHHHHhhcccCCchhhhhhHHH
Q 042183           29 QIDPNLFKAAAAGNLEPFKDMAREEILEICPSLLLQVNAKGDSRSLLVAAKFGHCDIVSVLIERAKLLQHEDEELESGMI  108 (179)
Q Consensus        29 ~~~~~l~~A~~~g~~~~~~~ll~~~~~~~~~~~~~~~~~~g~t~~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~~~~~~  108 (179)
                      ...++||.|+..|+.+.++.|++      .+..++..+..|.| |||+|+ .|+.+++++|+++|++++.          
T Consensus        11 ~~~t~L~~A~~~g~~~~v~~Ll~------~g~~~~~~~~~g~t-~L~~A~-~~~~~~v~~Ll~~g~~~~~----------   72 (156)
T 1bi7_B           11 PSADWLATAAARGRVEEVRALLE------AGANPNAPNSYGRR-PIQVMM-MGSARVAELLLLHGAEPNC----------   72 (156)
T ss_dssp             CSTTHHHHHHHHTCHHHHHHHHT------TTCCTTCCCSSSCC-TTTSSC-TTCHHHHHHHHTTTCCCCC----------
T ss_pred             cchHHHHHHHHcCCHHHHHHHHH------cCCCCCCCCCCCCC-HHHHHH-cCCHHHHHHHHHcCCCCCC----------
Confidence            35689999999999999999987      56788899999999 999985 8999999999999998887          


Q ss_pred             HhccCCCCc-HHHHHHHcCCHHHHHHHHhcCCCCCCCCCCCCCCHHHHHHHhcCCHHHHHHHHhcCCCCCC
Q 042183          109 RMMNKEKHT-ALHEAVFHKIVDVVKILTREDLDYPYSANNYNKTPLCMVAEYEHSSHMVVAILKNCTSVSH  178 (179)
Q Consensus       109 ~~~~~~g~t-~l~~A~~~g~~~~~~~Ll~~~~~~~~~~~~~g~tpl~~A~~~~~~~~~~~~Ll~~g~~~~~  178 (179)
                        ++..|+| |||+|+..|+.+++++|++.|++++ .+|..|.||||+|+. .|+.+++++|+++|++++.
T Consensus        73 --~d~~g~ttpL~~A~~~~~~~~v~~Ll~~ga~~~-~~d~~g~tpl~~A~~-~~~~~~v~~Ll~~ga~~~~  139 (156)
T 1bi7_B           73 --ADPATLTRPVHDAAREGFLDTLVVLHRAGARLD-VRDAWGRLPVDLAEE-LGHRDVARYLRAAAGGTRG  139 (156)
T ss_dssp             --CCTTTCCCHHHHHHHHTCHHHHHHHHHHTCCSS-CCCTTCCCHHHHHHH-HTCHHHHHHHSSCC-----
T ss_pred             --cCCCCCcHHHHHHHHCCCHHHHHHHHHcCCCCc-ccCCCCCCHHHHHHH-hCHHHHHHHHHHcCCCCCc
Confidence              9999999 9999999999999999999999986 899999999999999 9999999999999998764

>2rfm_A Putative ankyrin repeat protein TV1425; ANK repeat, protein binding; HET: BU2 GOL; 1.65A {Thermoplasma volcanium}

Probab=99.95  E-value=1.7e-27  Score=164.93  Aligned_cols=132  Identities=16%  Similarity=0.161  Sum_probs=117.4

Q ss_pred             ccccCCHHHHHHHHcCChHHHHHHHHHHHHhhCcccccccCCCCCcHHHHHHHHcCCHHHHHHHHHhhcccCCchhhhhh
Q 042183           26 SQLQIDPNLFKAAAAGNLEPFKDMAREEILEICPSLLLQVNAKGDSRSLLVAAKFGHCDIVSVLIERAKLLQHEDEELES  105 (179)
Q Consensus        26 ~~~~~~~~l~~A~~~g~~~~~~~ll~~~~~~~~~~~~~~~~~~g~t~~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~~~  105 (179)
                      ......+|||.|+..|+.+.++.|++      .+..++..+..|.| |||+|+..|+.+++++|++++++++.       
T Consensus        31 ~d~~g~t~L~~A~~~g~~~~v~~Ll~------~~~~~~~~~~~g~t-~L~~A~~~~~~~~v~~Ll~~g~~~~~-------   96 (192)
T 2rfm_A           31 RDSYNRTPLMVACMLGMENAIDKLVE------NFDKLEDKDIEGST-ALIWAVKNNRLGIAEKLLSKGSNVNT-------   96 (192)
T ss_dssp             CCTTCCCHHHHHHHHTCGGGHHHHHH------HHCCTTCCCTTSCC-HHHHHHHTTCHHHHHHHHHHTCCTTC-------
T ss_pred             cCCCCCCHHHHHHHcCCHHHHHHHHH------hccccccccccCcc-HHHHHHHcCCHHHHHHHHHCCCCCCC-------
Confidence            34456689999999999999999987      44567788899999 99999999999999999999988777       


Q ss_pred             HHHHhccCCCCcHHHHHHHcCCHHHHHHHHhcCCCCCCCCCCCCCCHHHHHHHhcCCHHHHHHHHhcCCCCCC
Q 042183          106 GMIRMMNKEKHTALHEAVFHKIVDVVKILTREDLDYPYSANNYNKTPLCMVAEYEHSSHMVVAILKNCTSVSH  178 (179)
Q Consensus       106 ~~~~~~~~~g~t~l~~A~~~g~~~~~~~Ll~~~~~~~~~~~~~g~tpl~~A~~~~~~~~~~~~Ll~~g~~~~~  178 (179)
                           ++..|+||||+|+..|+.+++++|++.|++++ ..|..|.||||+|+. .|+.+++++|+++|++++.
T Consensus        97 -----~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~-~~~~~g~t~L~~A~~-~~~~~~v~~Ll~~ga~~~~  162 (192)
T 2rfm_A           97 -----KDFSGKTPLMWSIIFGYSEMSYFLLEHGANVN-DRNLEGETPLIVASK-YGRSEIVKKLLELGADISA  162 (192)
T ss_dssp             -----CCTTSCCHHHHHHHHTCHHHHHHHHHTTCCSS-CCCTTCCCHHHHHHH-HTCHHHHHHHHHTTCCTTC
T ss_pred             -----CCCCCCcHHHHHHHcCCHHHHHHHHHCCCCCC-CCCCCCCCHHHHHHH-cCCHHHHHHHHHCCCCCCC
Confidence                 88899999999999999999999999999976 788999999999999 9999999999999988764

>1awc_B Protein (GA binding protein beta 1); complex (transcription regulation/DNA), DNA-binding, nuclear protein, ETS domain, ankyrin repeats; HET: DNA BRU CBR; 2.15A {Mus musculus} SCOP: d.211.1.1

Probab=99.95  E-value=1.7e-27  Score=159.30  Aligned_cols=126  Identities=22%  Similarity=0.280  Sum_probs=99.7

Q ss_pred             CHHHHHHHHcCChHHHHHHHHHHHHhhCcccccccCCCCCcHHHHHHHHcCCHHHHHHHHHhhcccCCchhhhhhHHHHh
Q 042183           31 DPNLFKAAAAGNLEPFKDMAREEILEICPSLLLQVNAKGDSRSLLVAAKFGHCDIVSVLIERAKLLQHEDEELESGMIRM  110 (179)
Q Consensus        31 ~~~l~~A~~~g~~~~~~~ll~~~~~~~~~~~~~~~~~~g~t~~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~~~~~~~~  110 (179)
                      .++|+.|+..|+.+.++.|++      .+..++ .+..|.| |||+|+..|+.+++++|+++|.+++.            
T Consensus         3 ~~~L~~A~~~g~~~~v~~Ll~------~g~~~~-~~~~g~t-~L~~A~~~~~~~~v~~Ll~~g~~~~~------------   62 (153)
T 1awc_B            3 GKKLLEAARAGQDDEVRILMA------NGAPFT-TDWLGTS-PLHLAAQYGHFSTTEVLLRAGVSRDA------------   62 (153)
T ss_dssp             HHHHHHHHHHTCHHHHHHHHH------HTCCCC-CCTTCCC-HHHHHHHHTCHHHHHHHHTTTCCTTC------------
T ss_pred             cHHHHHHHHcCCHHHHHHHHH------cCCCCC-cCCCCCC-HHHHHHHcCCHHHHHHHHHcCCCCCC------------
Confidence            467888888888888888876      222333 5777888 88888888888888888888877766            


Q ss_pred             ccCCCCcHHHHHHHcCCHHHHHHHHhcCCCCCCCCCCCCCCHHHHHHHhcCCHHHHHHHHhcCCCCCC
Q 042183          111 MNKEKHTALHEAVFHKIVDVVKILTREDLDYPYSANNYNKTPLCMVAEYEHSSHMVVAILKNCTSVSH  178 (179)
Q Consensus       111 ~~~~g~t~l~~A~~~g~~~~~~~Ll~~~~~~~~~~~~~g~tpl~~A~~~~~~~~~~~~Ll~~g~~~~~  178 (179)
                      ++..|+||||+|+..|+.+++++|++.|++++ ..|..|.||||+|+. .|+.+++++|+++|++++.
T Consensus        63 ~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~-~~~~~g~t~L~~A~~-~~~~~~v~~Ll~~ga~~~~  128 (153)
T 1awc_B           63 RTKVDRTPLHMAASEGHANIVEVLLKHGADVN-AKDMLKMTALHWATE-HNHQEVVELLIKYGADVHT  128 (153)
T ss_dssp             CCTTCCCHHHHHHHHTCHHHHHHHHTTTCCTT-CCCTTSCCHHHHHHH-TTCHHHHHHHHHTTCCTTC
T ss_pred             CCCCCCCHHHHHHHcChHHHHHHHHHcCCCCC-CCCCCCCCHHHHHHH-cCCHHHHHHHHHcCCCccc
Confidence            77788888888888888888888888888865 778888888888888 8888888888888877653

>1ihb_A P18-INK4C(INK6), cyclin-dependent kinase 6 inhibitor; cell cycle inhibitor, ankyrin repeat, CDK 4/6 inhibitor; 1.95A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bu9_A 1g3n_B 1mx4_A 1mx2_A 1mx6_A

Probab=99.95  E-value=2.2e-27  Score=159.95  Aligned_cols=128  Identities=17%  Similarity=0.057  Sum_probs=113.2

Q ss_pred             cccCCHHHHHHHHcCChHHHHHHHHHHHHhhCcccccccCCCCCcHHHHHHHHcCCHHHHHHHHHhhcccCCchhhhhhH
Q 042183           27 QLQIDPNLFKAAAAGNLEPFKDMAREEILEICPSLLLQVNAKGDSRSLLVAAKFGHCDIVSVLIERAKLLQHEDEELESG  106 (179)
Q Consensus        27 ~~~~~~~l~~A~~~g~~~~~~~ll~~~~~~~~~~~~~~~~~~g~t~~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~~~~  106 (179)
                      .....++||.|+. |+.++++.|++      .+..++.++..|.| |||+|+..|+.+++++|+++|.+++.        
T Consensus        35 ~~~g~t~L~~A~~-~~~~~v~~Ll~------~g~~~~~~~~~g~t-~L~~A~~~~~~~~v~~Ll~~g~~~~~--------   98 (162)
T 1ihb_A           35 NGFGRTALQVMKL-GNPEIARRLLL------RGANPDLKDRTGFA-VIHDAARAGFLDTLQTLLEFQADVNI--------   98 (162)
T ss_dssp             CTTSCCHHHHCCS-SCHHHHHHHHH------TTCCTTCCCTTSCC-HHHHHHHHTCHHHHHHHHHTTCCTTC--------
T ss_pred             CccCccHHHHHHc-CcHHHHHHHHH------cCCCCCCCCCCCCC-HHHHHHHcCCHHHHHHHHHcCCCCCC--------
Confidence            3445688999988 99999999887      56777888999999 99999999999999999999988777        


Q ss_pred             HHHhccCCCCcHHHHHHHcCCHHHHHHHHhcCCCCCCCCCCCCCCHHHHHHHhcCCHHHHHHHHhcCCC
Q 042183          107 MIRMMNKEKHTALHEAVFHKIVDVVKILTREDLDYPYSANNYNKTPLCMVAEYEHSSHMVVAILKNCTS  175 (179)
Q Consensus       107 ~~~~~~~~g~t~l~~A~~~g~~~~~~~Ll~~~~~~~~~~~~~g~tpl~~A~~~~~~~~~~~~Ll~~g~~  175 (179)
                          ++..|+||||+|+..|+.+++++|++.|++..+..+..|.|||++|+. .|+.+++++|+++|+|
T Consensus        99 ----~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~g~t~l~~A~~-~~~~~~~~~Ll~~GAd  162 (162)
T 1ihb_A           99 ----EDNEGNLPLHLAAKEGHLRVVEFLVKHTASNVGHRNHKGDTACDLARL-YGRNEVVSLMQANGAG  162 (162)
T ss_dssp             ----CCTTSCCHHHHHHHTTCHHHHHHHHHHSCCCTTCCCTTSCCHHHHHHH-TTCHHHHHHHHHTC--
T ss_pred             ----cCCCCCCHHHHHHHcCCHHHHHHHHHccCCCCCCcCCCCCcHHHHHHH-cCCHHHHHHHHHhCCC
Confidence                899999999999999999999999999998534889999999999999 9999999999999985

>2y1l_E Darpin-8.4; hydrolase-inhibitor complex, DEVD darpin, ankyrin repeat Pro ribosome display, apoptosis; 1.80A {Synthetic source} PDB: 3noc_D* 4dx5_D* 2j8s_D* 4dx6_D* 4dx7_D* 3nog_D* 1mj0_A 1svx_A 2qyj_A 2bkg_A 2p2c_P 2bkk_B* 2v5q_C 2xee_A 2xeh_A 3q9n_C* 3q9u_C*

Probab=99.95  E-value=3.1e-26  Score=155.63  Aligned_cols=125  Identities=24%  Similarity=0.305  Sum_probs=116.4

Q ss_pred             ccCCHHHHHHHHcCChHHHHHHHHHHHHhhCcccccccCCCCCcHHHHHHHHcCCHHHHHHHHHhhcccCCchhhhhhHH
Q 042183           28 LQIDPNLFKAAAAGNLEPFKDMAREEILEICPSLLLQVNAKGDSRSLLVAAKFGHCDIVSVLIERAKLLQHEDEELESGM  107 (179)
Q Consensus        28 ~~~~~~l~~A~~~g~~~~~~~ll~~~~~~~~~~~~~~~~~~g~t~~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~~~~~  107 (179)
                      ....++||.|+..|+.++++.|++      .+..++..|..|.| |||+|+..|+.+++++|+++|++.+.         
T Consensus        45 ~~g~t~L~~A~~~~~~~~v~~Ll~------~g~~~~~~~~~g~t-~L~~A~~~~~~~~~~~Ll~~g~~~~~---------  108 (169)
T 2y1l_E           45 ASGWTPLHLAAFNGHLEIVEVLLK------NGADVNAVDHAGMT-PLRLAALFGHLEIVEVLLKNGADVNA---------  108 (169)
T ss_dssp             TTSCCHHHHHHHTTCHHHHHHHHH------TTCCTTCCCTTSCC-HHHHHHHTTCHHHHHHHHHTTCCTTC---------
T ss_pred             CCCCCHHHHHHHcCCHHHHHHHHH------cCCCCCccCCCCCC-HHHHHHHcCCHHHHHHHHHcCCCCCC---------
Confidence            445689999999999999999988      66778889999999 99999999999999999999998877         


Q ss_pred             HHhccCCCCcHHHHHHHcCCHHHHHHHHhcCCCCCCCCCCCCCCHHHHHHHhcCCHHHHHHHHhcC
Q 042183          108 IRMMNKEKHTALHEAVFHKIVDVVKILTREDLDYPYSANNYNKTPLCMVAEYEHSSHMVVAILKNC  173 (179)
Q Consensus       108 ~~~~~~~g~t~l~~A~~~g~~~~~~~Ll~~~~~~~~~~~~~g~tpl~~A~~~~~~~~~~~~Ll~~g  173 (179)
                         ++..|.||||+|+..|+.+++++|++.|+++. ..|..|.|||++|+. .|+.+++++|++.|
T Consensus       109 ---~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~-~~~~~g~t~l~~A~~-~~~~~~~~~L~~~G  169 (169)
T 2y1l_E          109 ---NDMEGHTPLHLAAMFGHLEIVEVLLKNGADVN-AQDKFGKTAFDISID-NGNEDLAEILQKLN  169 (169)
T ss_dssp             ---CCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTT-CCCTTSCCHHHHHHH-TTCHHHHHHHHTC-
T ss_pred             ---CCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCC-CcCCCCCCHHHHHHH-hCCHHHHHHHHHcC
Confidence               89999999999999999999999999999976 889999999999999 99999999999876

>3v30_A DNA-binding protein rfxank; structural genomics consortium, SGC, rfxank, ANK repeat, Pro binding; 1.57A {Homo sapiens} PDB: 3uxg_A

Probab=99.95  E-value=6.2e-27  Score=159.32  Aligned_cols=127  Identities=24%  Similarity=0.320  Sum_probs=118.4

Q ss_pred             HHHHHHHHcCChHHHHHHHHHHHHhhCcccccccCCCCCcHHHHHHHHcCCHHHHHHHHHhhcccCCchhhhhhHHHHhc
Q 042183           32 PNLFKAAAAGNLEPFKDMAREEILEICPSLLLQVNAKGDSRSLLVAAKFGHCDIVSVLIERAKLLQHEDEELESGMIRMM  111 (179)
Q Consensus        32 ~~l~~A~~~g~~~~~~~ll~~~~~~~~~~~~~~~~~~g~t~~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~~~~~~~~~  111 (179)
                      ++||.|+..|+.+.++.|++     ..+..++..+..|.| |||+|+..|+.+++++|+++|++++.            +
T Consensus         4 ~~L~~A~~~g~~~~v~~ll~-----~~~~~~~~~~~~g~t-~L~~A~~~~~~~~v~~Ll~~g~~~~~------------~   65 (172)
T 3v30_A            4 LSIHQLAAQGELDQLKEHLR-----KGDNLVNKPDERGFT-PLIWASAFGEIETVRFLLEWGADPHI------------L   65 (172)
T ss_dssp             CCHHHHHHTTCHHHHHHHHT-----TCSGGGGCCCTTSCC-HHHHHHHTTCHHHHHHHHHHTCCTTC------------C
T ss_pred             hhHHHHHHcCCHHHHHHHHH-----cCcccccCCCCCCCC-HHHHHHHcCCHHHHHHHHHcCCCchh------------h
Confidence            57999999999999999876     455558889999999 99999999999999999999998877            8


Q ss_pred             cCCCCcHHHHHHHcCCHHHHHHHHhcCCCCCCCCCCCCCCHHHHHHHhcCCHHHHHHHHhcCCCCCC
Q 042183          112 NKEKHTALHEAVFHKIVDVVKILTREDLDYPYSANNYNKTPLCMVAEYEHSSHMVVAILKNCTSVSH  178 (179)
Q Consensus       112 ~~~g~t~l~~A~~~g~~~~~~~Ll~~~~~~~~~~~~~g~tpl~~A~~~~~~~~~~~~Ll~~g~~~~~  178 (179)
                      +..|.||||+|+..|+.+++++|++.|++++ ..|..|.||||+|+. .|+.+++++|+++|++++.
T Consensus        66 ~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~-~~~~~g~t~L~~A~~-~~~~~~v~~Ll~~ga~~~~  130 (172)
T 3v30_A           66 AKERESALSLASTGGYTDIVGLLLERDVDIN-IYDWNGGTPLLYAVR-GNHVKCVEALLARGADLTT  130 (172)
T ss_dssp             CTTCCCHHHHHHHTTCHHHHHHHHTTTCCTT-CCCTTSCCHHHHHHH-TTCHHHHHHHHHTTCCTTC
T ss_pred             cccCCCHHHHHHHCCCHHHHHHHHHcCCCCC-CCCCCCCCHHHHHHH-cCCHHHHHHHHHcCCCccc
Confidence            9999999999999999999999999999986 889999999999999 9999999999999998864

>1ihb_A P18-INK4C(INK6), cyclin-dependent kinase 6 inhibitor; cell cycle inhibitor, ankyrin repeat, CDK 4/6 inhibitor; 1.95A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bu9_A 1g3n_B 1mx4_A 1mx2_A 1mx6_A

Probab=99.95  E-value=5.7e-27  Score=157.86  Aligned_cols=124  Identities=23%  Similarity=0.264  Sum_probs=116.7

Q ss_pred             CCHHHHHHHHcCChHHHHHHHHHHHHhhCcccccccCCCCCcHHHHHHHHcCCHHHHHHHHHhhcccCCchhhhhhHHHH
Q 042183           30 IDPNLFKAAAAGNLEPFKDMAREEILEICPSLLLQVNAKGDSRSLLVAAKFGHCDIVSVLIERAKLLQHEDEELESGMIR  109 (179)
Q Consensus        30 ~~~~l~~A~~~g~~~~~~~ll~~~~~~~~~~~~~~~~~~g~t~~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~~~~~~~  109 (179)
                      ..++|+.|+..|+.+.++.|++      .+..++..+..|.| |||+|+. |+.+++++|+++|.+++.           
T Consensus         5 ~~~~L~~A~~~g~~~~v~~Ll~------~~~~~~~~~~~g~t-~L~~A~~-~~~~~v~~Ll~~g~~~~~-----------   65 (162)
T 1ihb_A            5 WGNELASAAARGDLEQLTSLLQ------NNVNVNAQNGFGRT-ALQVMKL-GNPEIARRLLLRGANPDL-----------   65 (162)
T ss_dssp             CHHHHHHHHHHTCHHHHHHHTT------SCCCTTCCCTTSCC-HHHHCCS-SCHHHHHHHHHTTCCTTC-----------
T ss_pred             HhhHHHHHHHcCCHHHHHHHHh------CCCCccccCccCcc-HHHHHHc-CcHHHHHHHHHcCCCCCC-----------
Confidence            4588999999999999999987      66778889999999 9999999 999999999999998877           


Q ss_pred             hccCCCCcHHHHHHHcCCHHHHHHHHhcCCCCCCCCCCCCCCHHHHHHHhcCCHHHHHHHHhcCCC
Q 042183          110 MMNKEKHTALHEAVFHKIVDVVKILTREDLDYPYSANNYNKTPLCMVAEYEHSSHMVVAILKNCTS  175 (179)
Q Consensus       110 ~~~~~g~t~l~~A~~~g~~~~~~~Ll~~~~~~~~~~~~~g~tpl~~A~~~~~~~~~~~~Ll~~g~~  175 (179)
                       ++..|+||||+|+..|+.+++++|++.|++++ ..|..|.||||+|+. .|+.+++++|+++|++
T Consensus        66 -~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~-~~~~~g~t~L~~A~~-~~~~~~v~~Ll~~g~~  128 (162)
T 1ihb_A           66 -KDRTGFAVIHDAARAGFLDTLQTLLEFQADVN-IEDNEGNLPLHLAAK-EGHLRVVEFLVKHTAS  128 (162)
T ss_dssp             -CCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTT-CCCTTSCCHHHHHHH-TTCHHHHHHHHHHSCC
T ss_pred             -CCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCC-CcCCCCCCHHHHHHH-cCCHHHHHHHHHccCC
Confidence             89999999999999999999999999999976 889999999999999 9999999999999986

>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus}

Probab=99.95  E-value=3.1e-26  Score=162.67  Aligned_cols=134  Identities=22%  Similarity=0.296  Sum_probs=113.0

Q ss_pred             CCHHHHHHHHcCChHHHHHHHHHHHHhhCcccccccCCCCCcHHHHHHHHcCCHHHHHHHHHhhcccCCchhhhhhHHHH
Q 042183           30 IDPNLFKAAAAGNLEPFKDMAREEILEICPSLLLQVNAKGDSRSLLVAAKFGHCDIVSVLIERAKLLQHEDEELESGMIR  109 (179)
Q Consensus        30 ~~~~l~~A~~~g~~~~~~~ll~~~~~~~~~~~~~~~~~~g~t~~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~~~~~~~  109 (179)
                      ..+|||.|+..|+.+.++.|++     ..+..++.+|..|.| |||+|+..|+.+++++|++++++...       ...+
T Consensus         3 g~t~L~~A~~~g~~~~v~~Ll~-----~~g~~~~~~~~~g~t-~L~~A~~~g~~~~v~~Ll~~~~~~~~-------~~~~   69 (232)
T 2rfa_A            3 WESPLLLAAKENDVQALSKLLK-----FEGCEVHQRGAMGET-ALHIAALYDNLEAAMVLMEAAPELVF-------EPMT   69 (232)
T ss_dssp             TTCHHHHHHHTTCHHHHHHHHT-----TTCSCTTCCCTTSCC-HHHHHHHTTCHHHHHHHHHHCGGGGG-------CCCC
T ss_pred             CCCHHHHHHHcCCHHHHHHHHH-----hcCCCcccCCCCCCC-HHHHHHHcCCHHHHHHHHHcCchhcc-------cccc
Confidence            4578999999999999998876     347788889999999 99999999999999999999876511       0011


Q ss_pred             hccCCCCcHHHHHHHcCCHHHHHHHHhcCCCCCCCCCC-------------CCCCHHHHHHHhcCCHHHHHHHHhcCCCC
Q 042183          110 MMNKEKHTALHEAVFHKIVDVVKILTREDLDYPYSANN-------------YNKTPLCMVAEYEHSSHMVVAILKNCTSV  176 (179)
Q Consensus       110 ~~~~~g~t~l~~A~~~g~~~~~~~Ll~~~~~~~~~~~~-------------~g~tpl~~A~~~~~~~~~~~~Ll~~g~~~  176 (179)
                      .++..|+||||+|+..|+.+++++|++.|+++. ..+.             .|.||||+|+. .|+.+++++|+++|+++
T Consensus        70 ~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~-~~~~~~~~~~~~~~~~~~g~t~L~~A~~-~~~~~~v~~Ll~~ga~~  147 (232)
T 2rfa_A           70 SELYEGQTALHIAVINQNVNLVRALLARGASVS-ARATGSVFHYRPHNLIYYGEHPLSFAAC-VGSEEIVRLLIEHGADI  147 (232)
T ss_dssp             STTTTTCCHHHHHHHTTCHHHHHHHHHTTCCTT-CCCCSGGGSCCTTCSCCCCSSHHHHHHH-HTCHHHHHHHHHTTCCT
T ss_pred             ccCCCCcCHHHHHHHcCCHHHHHHHHhCCCCCC-cccCCcceeecccccccCCCCHHHHHHH-cCCHHHHHHHHHCCCCC
Confidence            267789999999999999999999999998875 4544             69999999999 99999999999999887


Q ss_pred             CC
Q 042183          177 SH  178 (179)
Q Consensus       177 ~~  178 (179)
                      +.
T Consensus       148 ~~  149 (232)
T 2rfa_A          148 RA  149 (232)
T ss_dssp             TC
T ss_pred             CC
Confidence            64

>3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 3ixe_A 2kbx_A

Probab=99.94  E-value=9.8e-27  Score=159.41  Aligned_cols=131  Identities=19%  Similarity=0.152  Sum_probs=122.2

Q ss_pred             cccCCHHHHHHHHcCChHHHHHHHHHHHHhhCcccccccCCCCCcHHHHHHHHcCCHHHHHHHHHhhcccCCchhhhhhH
Q 042183           27 QLQIDPNLFKAAAAGNLEPFKDMAREEILEICPSLLLQVNAKGDSRSLLVAAKFGHCDIVSVLIERAKLLQHEDEELESG  106 (179)
Q Consensus        27 ~~~~~~~l~~A~~~g~~~~~~~ll~~~~~~~~~~~~~~~~~~g~t~~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~~~~  106 (179)
                      .....++||.|+..|+.++++.|++      .+..++..+..|.| |||+|+..|+.+++++|+++|++++.        
T Consensus        36 ~~~g~t~L~~A~~~~~~~~v~~Ll~------~g~~~~~~~~~g~t-~L~~A~~~~~~~~v~~Ll~~g~~~~~--------  100 (179)
T 3f6q_A           36 DDHGFSPLHWACREGRSAVVEMLIM------RGARINVMNRGDDT-PLHLAASHGHRDIVQKLLQYKADINA--------  100 (179)
T ss_dssp             CTTSCCHHHHHHHTTCHHHHHHHHH------TTCCTTCCCTTCCC-HHHHHHHTTCHHHHHHHHHTTCCTTC--------
T ss_pred             CCCCCCHHHHHHHcCcHHHHHHHHH------cCCCCCCcCCCCCC-HHHHHHHcCCHHHHHHHHHcCCCCCc--------
Confidence            3445689999999999999999998      67788889999999 99999999999999999999998887        


Q ss_pred             HHHhccCCCCcHHHHHHHcCCHHHHHHHHhcCCCCCCCCCCCCCCHHHHHHHhcCCHHHHHHHHhcCCCCCC
Q 042183          107 MIRMMNKEKHTALHEAVFHKIVDVVKILTREDLDYPYSANNYNKTPLCMVAEYEHSSHMVVAILKNCTSVSH  178 (179)
Q Consensus       107 ~~~~~~~~g~t~l~~A~~~g~~~~~~~Ll~~~~~~~~~~~~~g~tpl~~A~~~~~~~~~~~~Ll~~g~~~~~  178 (179)
                          ++..|.||||+|+..|+.+++++|++.|+++. ..|..|.|||++|+. .++.+++++|+++|++++.
T Consensus       101 ----~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~-~~~~~g~tpl~~A~~-~~~~~~~~~L~~~g~~~~~  166 (179)
T 3f6q_A          101 ----VNEHGNVPLHYACFWGQDQVAEDLVANGALVS-ICNKYGEMPVDKAKA-PLRELLRERAEKMGQNLNR  166 (179)
T ss_dssp             ----CCTTSCCHHHHHHHTTCHHHHHHHHHTTCCSS-BCCTTSCCGGGGSCH-HHHHHHHHHHHHTTCCCSC
T ss_pred             ----cCCCCCCHHHHHHHcCCHHHHHHHHHCCCCcc-hhccCCCCcHHHHHH-HHHHHHHHHHHHhhcCccc
Confidence                99999999999999999999999999999976 899999999999999 9999999999999998764

>2vge_A RELA-associated inhibitor; iaspp, nucleus, apoptosis, repressor, cytoplasm, phosphorylation, P53 binding protein, ANK repeat, SH3 domain; 2.10A {Homo sapiens}

Probab=99.94  E-value=3e-27  Score=168.27  Aligned_cols=128  Identities=18%  Similarity=0.065  Sum_probs=117.9

Q ss_pred             CCHHHHHHHHcCChHHHHHHHHHHHHhhCcccccccCCCCCcHHHHHHHHcCCHHHHHHHHHhhcccCCchhhhhhHHHH
Q 042183           30 IDPNLFKAAAAGNLEPFKDMAREEILEICPSLLLQVNAKGDSRSLLVAAKFGHCDIVSVLIERAKLLQHEDEELESGMIR  109 (179)
Q Consensus        30 ~~~~l~~A~~~g~~~~~~~ll~~~~~~~~~~~~~~~~~~g~t~~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~~~~~~~  109 (179)
                      ..++||.|+..|+.++++.|++      .+..++..|..|.| |||+|+..|+.+++++|+++|++++.           
T Consensus        21 ~~t~L~~A~~~g~~~~v~~Ll~------~g~~~~~~d~~g~t-pLh~A~~~g~~~~v~~Ll~~ga~~n~-----------   82 (229)
T 2vge_A           21 PLVLLLDAALTGELEVVQQAVK------EMNDPSQPNEEGIT-ALHNAICGANYSIVDFLITAGANVNS-----------   82 (229)
T ss_dssp             HHHHHHHHHHHTCHHHHHHHHH------HSSCTTCCCTTSCC-HHHHHHHTTCHHHHHHHHHTTCCTTC-----------
T ss_pred             hhHHHHHHHHcCCHHHHHHHHh------cCCCCCCCCCCCCC-HHHHHHHcCCHHHHHHHHHCCCCCCC-----------
Confidence            4478999999999999999987      45677889999999 99999999999999999999998887           


Q ss_pred             hccCCCCcHHHHHHHcCCHHHHHHHHhcCCCCCCCCC-CCCCCHHHHH--HHhcCCHHHHHHHHhcCCCCCC
Q 042183          110 MMNKEKHTALHEAVFHKIVDVVKILTREDLDYPYSAN-NYNKTPLCMV--AEYEHSSHMVVAILKNCTSVSH  178 (179)
Q Consensus       110 ~~~~~g~t~l~~A~~~g~~~~~~~Ll~~~~~~~~~~~-~~g~tpl~~A--~~~~~~~~~~~~Ll~~g~~~~~  178 (179)
                       +|..|+||||+|+..|+.+++++|++.|++++ ..+ ..|.|||++|  +. .|+.+++++|+++|++++.
T Consensus        83 -~d~~g~tpLh~A~~~g~~~~v~~Ll~~ga~~~-~~~~~~g~tpL~~A~a~~-~~~~~~v~~Ll~~ga~~~~  151 (229)
T 2vge_A           83 -PDSHGWTPLHCAASCNDTVICMALVQHGAAIF-ATTLSDGATAFEKCDPYR-EGYADCATYLADVEQSMGL  151 (229)
T ss_dssp             -CCTTCCCHHHHHHHTTCHHHHHHHHTTTCCTT-CCCSSTTCCTGGGCCTTS-TTHHHHHHHHHHHHHHTTT
T ss_pred             -CCCCCCCHHHHHHHcCCHHHHHHHHHcCCCcc-cccCCCCCCHHHHHHHHh-cChHHHHHHHHHcCCCccc
Confidence             99999999999999999999999999999987 554 6999999999  89 9999999999999987754

>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A

Probab=99.94  E-value=1.3e-25  Score=158.42  Aligned_cols=140  Identities=19%  Similarity=0.167  Sum_probs=86.0

Q ss_pred             CCHHHHHHHHcCChHHHHHHHHHHHHhhCcccccccCCCCCcHHHHHHHHcCCHHHHHHHHHhhc-ccCCchhh------
Q 042183           30 IDPNLFKAAAAGNLEPFKDMAREEILEICPSLLLQVNAKGDSRSLLVAAKFGHCDIVSVLIERAK-LLQHEDEE------  102 (179)
Q Consensus        30 ~~~~l~~A~~~g~~~~~~~ll~~~~~~~~~~~~~~~~~~g~t~~L~~A~~~g~~~~v~~ll~~~~-~~~~~~~~------  102 (179)
                      ..++||.|+..|+.++++.|++      .+..++..+..|.| |||+|+..|+.+++++|++.+. ..+.....      
T Consensus        25 g~t~L~~A~~~g~~~~v~~Ll~------~g~~~~~~~~~g~t-~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~L~   97 (223)
T 2f8y_A           25 GETALHLAARYSRSDAAKRLLE------ASADANIQDNMGRT-PLHAAVSADAQGVFQILIRNRATDLDARMHDGTTPLI   97 (223)
T ss_dssp             CCCHHHHHHHTTCHHHHHHHHH------TTCCTTCCCTTSCC-HHHHHHHTTCHHHHHHHHHBTTSCTTCCCTTCCCHHH
T ss_pred             CCchHHHHHHcCCHHHHHHHHH------cCCCCCCcCCCCCC-HHHHHHHcCCHHHHHHHHHcCCCCcccCCCCCCcHHH
Confidence            4466666666666666666665      33444445555555 5555555555555555555443 22211000      


Q ss_pred             ---------------hhhHHHHhccCCCCcHHHHHHHcCCHHHHHHHHhcCCCCCCCCCCCCCCHHHHHHHhcCCHHHHH
Q 042183          103 ---------------LESGMIRMMNKEKHTALHEAVFHKIVDVVKILTREDLDYPYSANNYNKTPLCMVAEYEHSSHMVV  167 (179)
Q Consensus       103 ---------------~~~~~~~~~~~~g~t~l~~A~~~g~~~~~~~Ll~~~~~~~~~~~~~g~tpl~~A~~~~~~~~~~~  167 (179)
                                     ..+..++.++..|+||||+|+..|+.+++++|++.|++++ ..+..|.||||+|+. .|+.++++
T Consensus        98 ~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~-~~~~~g~t~L~~A~~-~~~~~~v~  175 (223)
T 2f8y_A           98 LAARLAVEGMLEDLINSHADVNAVDDLGKSALHWAAAVNNVDAAVVLLKNGANKD-MQNNREETPLFLAAR-EGSYETAK  175 (223)
T ss_dssp             HHHHHTCHHHHHHHHHTTCCTTCBCTTSCBHHHHHHHTTCHHHHHHHHHTTCCTT-CCCTTCCCHHHHHHH-HTCHHHHH
T ss_pred             HHHHhCcHHHHHHHHHcCCCCcCcCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCC-CcCCCCcCHHHHHHH-cCCHHHHH
Confidence                           1111223366677777777777777777777777777765 677777777777777 77777777


Q ss_pred             HHHhcCCCCCC
Q 042183          168 AILKNCTSVSH  178 (179)
Q Consensus       168 ~Ll~~g~~~~~  178 (179)
                      +|+++|++++.
T Consensus       176 ~Ll~~ga~~~~  186 (223)
T 2f8y_A          176 VLLDHFANRDI  186 (223)
T ss_dssp             HHHHTTCCTTC
T ss_pred             HHHHcCCCCcc
Confidence            77777776653

>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A

Probab=99.94  E-value=1.1e-25  Score=159.69  Aligned_cols=142  Identities=18%  Similarity=0.158  Sum_probs=102.7

Q ss_pred             ccCCHHHHHHHHcCChHHHHHHHHHHHHhhCcccccccCCCCCcHHHHHHHHcCCHHHHHHHHHhhcccCCchhh-----
Q 042183           28 LQIDPNLFKAAAAGNLEPFKDMAREEILEICPSLLLQVNAKGDSRSLLVAAKFGHCDIVSVLIERAKLLQHEDEE-----  102 (179)
Q Consensus        28 ~~~~~~l~~A~~~g~~~~~~~ll~~~~~~~~~~~~~~~~~~g~t~~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~-----  102 (179)
                      ....++||.|+..|+.++++.|++      .+..++..|..|.| |||+|+..|+.+++++|++++.+.+.....     
T Consensus        38 ~~g~t~L~~A~~~g~~~~v~~Ll~------~g~~~~~~~~~g~t-~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L  110 (231)
T 3aji_A           38 QDSRTALHWACSAGHTEIVEFLLQ------LGVPVNDKDDAGWS-PLHIAASAGXDEIVKALLVKGAHVNAVNQNGCTPL  110 (231)
T ss_dssp             TTSCCHHHHHHHHTCHHHHHHHHH------TTCCSCCCCTTSCC-HHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHH
T ss_pred             CCCCCHHHHHHHcCcHHHHHHHHH------hCCCCCCcCCCCCC-HHHHHHHcCHHHHHHHHHHcCCCCCCCCCCCCCHH
Confidence            334567777777777777777776      45556666667777 777777777777777777776665442111     


Q ss_pred             ----------------hhhHHHHhccCCCCcHHHHHHHcCCHHHHHHHHhcCCCCCCCCCCCCCCHHHHHHHhcCCHHHH
Q 042183          103 ----------------LESGMIRMMNKEKHTALHEAVFHKIVDVVKILTREDLDYPYSANNYNKTPLCMVAEYEHSSHMV  166 (179)
Q Consensus       103 ----------------~~~~~~~~~~~~g~t~l~~A~~~g~~~~~~~Ll~~~~~~~~~~~~~g~tpl~~A~~~~~~~~~~  166 (179)
                                      ..+..++.++..|.||||+|+..|+.+++++|++.|++++ .+|..|.||||+|+. .|+.+++
T Consensus       111 ~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~-~~~~~g~t~L~~A~~-~~~~~~v  188 (231)
T 3aji_A          111 HYAASKNRHEIAVMLLEGGANPDAKDHYDATAMHRAAAKGNLKMVHILLFYKASTN-IQDTEGNTPLHLACD-EERVEEA  188 (231)
T ss_dssp             HHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCSC-CCCTTSCCHHHHHHH-TTCHHHH
T ss_pred             HHHHHcCCHHHHHHHHHcCCCCCCcCCCCCcHHHHHHHcCCHHHHHHHHhcCCCcc-ccCCCCCCHHHHHHH-CCCHHHH
Confidence                            1111223467778888888888888888888888888876 778888899999988 8888999


Q ss_pred             HHHHhcCCCCCC
Q 042183          167 VAILKNCTSVSH  178 (179)
Q Consensus       167 ~~Ll~~g~~~~~  178 (179)
                      ++|+++|++++.
T Consensus       189 ~~Ll~~ga~~~~  200 (231)
T 3aji_A          189 KFLVTQGASIYI  200 (231)
T ss_dssp             HHHHHTTCCSCC
T ss_pred             HHHHHCCCCCCC
Confidence            999888888754

>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Homo sapiens} SCOP: d.211.1.1 PDB: 1nfi_E

Probab=99.94  E-value=3.1e-26  Score=163.26  Aligned_cols=136  Identities=19%  Similarity=0.218  Sum_probs=95.0

Q ss_pred             ccCCHHHHHHHHcCChHHHHHHHHHHHHhhCcccccccCCCCCcHHHHHHHHcCCHHHHHHHHHhhcccCCchhhhhhHH
Q 042183           28 LQIDPNLFKAAAAGNLEPFKDMAREEILEICPSLLLQVNAKGDSRSLLVAAKFGHCDIVSVLIERAKLLQHEDEELESGM  107 (179)
Q Consensus        28 ~~~~~~l~~A~~~g~~~~~~~ll~~~~~~~~~~~~~~~~~~g~t~~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~~~~~  107 (179)
                      ....+|||.|+..|+.++++.|++      .+..++.++..|.| |||+|+..|+.+++++|++.+..+..      ...
T Consensus        43 ~~g~t~L~~A~~~~~~~~v~~Ll~------~g~~~~~~~~~g~t-~L~~A~~~~~~~~v~~Ll~~~~~~~~------~~~  109 (236)
T 1ikn_D           43 NLQQTPLHLAVITNQPEIAEALLG------AGCDPELRDFRGNT-PLHLACEQGCLASVGVLTQSCTTPHL------HSI  109 (236)
T ss_dssp             TTCCCHHHHHHHTTCHHHHHCCCS------CCCCSCCCCTTCCC-HHHHHHHHTCHHHHHHHHHSTTTTSS------SCG
T ss_pred             CCCCCHHHHHHHcCCHHHHHHHHH------cCCCCCCcCCCCCC-HHHHHHHcCCHHHHHHHHhcccchhH------HHH
Confidence            345577888888888888877765      55666777777778 88888888888888888877654321      011


Q ss_pred             HHhccCCCCcHHHHHHHcCCHHHHHHHHhcCCCCCCCCCC-CCCCHHHHHHHhcCCHHHHHHHHhcCCCCCC
Q 042183          108 IRMMNKEKHTALHEAVFHKIVDVVKILTREDLDYPYSANN-YNKTPLCMVAEYEHSSHMVVAILKNCTSVSH  178 (179)
Q Consensus       108 ~~~~~~~g~t~l~~A~~~g~~~~~~~Ll~~~~~~~~~~~~-~g~tpl~~A~~~~~~~~~~~~Ll~~g~~~~~  178 (179)
                      ++..+..|+||||+|+..|+.+++++|++.|++++ ..+. .|.||||+|+. .|+.+++++|+++|++++.
T Consensus       110 ~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~-~~~~~~g~tpL~~A~~-~~~~~~v~~Ll~~ga~~~~  179 (236)
T 1ikn_D          110 LKATNYNGHTCLHLASIHGYLGIVELLVSLGADVN-AQEPCNGRTALHLAVD-LQNPDLVSLLLKCGADVNR  179 (236)
T ss_dssp             GGCCCTTCCCHHHHHHHTTCHHHHHHHHHHTCCTT-CCCTTTCCCHHHHHHH-TTCHHHHHHHHTTTCCSCC
T ss_pred             hhccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCC-CCCCCCCCCHHHHHHH-cCCHHHHHHHHHcCCCCCc
Confidence            23356667777777777777777777777777765 5555 67777777777 7777777777777776653

>1awc_B Protein (GA binding protein beta 1); complex (transcription regulation/DNA), DNA-binding, nuclear protein, ETS domain, ankyrin repeats; HET: DNA BRU CBR; 2.15A {Mus musculus} SCOP: d.211.1.1

Probab=99.94  E-value=4.7e-26  Score=152.27  Aligned_cols=122  Identities=22%  Similarity=0.228  Sum_probs=113.6

Q ss_pred             cccCCHHHHHHHHcCChHHHHHHHHHHHHhhCcccccccCCCCCcHHHHHHHHcCCHHHHHHHHHhhcccCCchhhhhhH
Q 042183           27 QLQIDPNLFKAAAAGNLEPFKDMAREEILEICPSLLLQVNAKGDSRSLLVAAKFGHCDIVSVLIERAKLLQHEDEELESG  106 (179)
Q Consensus        27 ~~~~~~~l~~A~~~g~~~~~~~ll~~~~~~~~~~~~~~~~~~g~t~~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~~~~  106 (179)
                      .....++||.|+..|+.++++.|++      .+..++..+..|.| |||+|+..|+.+++++|+++|++++.        
T Consensus        31 ~~~g~t~L~~A~~~~~~~~v~~Ll~------~g~~~~~~~~~g~t-~L~~A~~~~~~~~v~~Ll~~g~~~~~--------   95 (153)
T 1awc_B           31 DWLGTSPLHLAAQYGHFSTTEVLLR------AGVSRDARTKVDRT-PLHMAASEGHANIVEVLLKHGADVNA--------   95 (153)
T ss_dssp             CTTCCCHHHHHHHHTCHHHHHHHHT------TTCCTTCCCTTCCC-HHHHHHHHTCHHHHHHHHTTTCCTTC--------
T ss_pred             CCCCCCHHHHHHHcCCHHHHHHHHH------cCCCCCCCCCCCCC-HHHHHHHcChHHHHHHHHHcCCCCCC--------
Confidence            3445689999999999999999987      66678889999999 99999999999999999999998877        


Q ss_pred             HHHhccCCCCcHHHHHHHcCCHHHHHHHHhcCCCCCCCCCCCCCCHHHHHHHhcCCHHHHHHH
Q 042183          107 MIRMMNKEKHTALHEAVFHKIVDVVKILTREDLDYPYSANNYNKTPLCMVAEYEHSSHMVVAI  169 (179)
Q Consensus       107 ~~~~~~~~g~t~l~~A~~~g~~~~~~~Ll~~~~~~~~~~~~~g~tpl~~A~~~~~~~~~~~~L  169 (179)
                          ++..|+||||+|+..|+.+++++|++.|++++ ..|..|.|||++|+. .|+.+++++|
T Consensus        96 ----~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~-~~~~~g~t~l~~A~~-~~~~~i~~~L  152 (153)
T 1awc_B           96 ----KDMLKMTALHWATEHNHQEVVELLIKYGADVH-TQSKFCKTAFDISID-NGNEDLAEIL  152 (153)
T ss_dssp             ----CCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTT-CCCTTSCCHHHHHHH-TTCHHHHHHH
T ss_pred             ----CCCCCCCHHHHHHHcCCHHHHHHHHHcCCCcc-ccCCCCCCHHHHHHH-cCCHHHHHHh
Confidence                89999999999999999999999999999986 899999999999999 9999999987

>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium, SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo sapiens} PDB: 3v2x_A 3v2o_A 3so8_A

Probab=99.94  E-value=8.4e-26  Score=152.98  Aligned_cols=128  Identities=18%  Similarity=0.102  Sum_probs=118.5

Q ss_pred             cccCCHHHHHHHHcCChHHHHHHHHHHHHhhCcccccccCCCCCcHHHHHHHHcCCHHHHHHHHHhhcccCCchhhhhhH
Q 042183           27 QLQIDPNLFKAAAAGNLEPFKDMAREEILEICPSLLLQVNAKGDSRSLLVAAKFGHCDIVSVLIERAKLLQHEDEELESG  106 (179)
Q Consensus        27 ~~~~~~~l~~A~~~g~~~~~~~ll~~~~~~~~~~~~~~~~~~g~t~~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~~~~  106 (179)
                      .....++||.|+..|+.++++.|++      .+..++..+..|.| |||+|+..|+.+++++|++++++++.        
T Consensus        33 ~~~g~t~L~~A~~~~~~~~v~~Ll~------~g~~~~~~~~~g~t-~L~~A~~~~~~~~v~~Ll~~g~~~~~--------   97 (167)
T 3v31_A           33 DEEGFTPLMWAAAHGQIAVVEFLLQ------NGADPQLLGKGRES-ALSLACSKGYTDIVKMLLDCGVDVNE--------   97 (167)
T ss_dssp             CTTSCCHHHHHHHTTCHHHHHHHHH------TTCCTTCCCTTCCC-HHHHHHHHTCHHHHHHHHHHTCCTTC--------
T ss_pred             CCCCCCHHHHHHHCCCHHHHHHHHH------cCCCCCCcCCCCCc-HHHHHHHcCCHHHHHHHHHCCCCCCc--------
Confidence            3445689999999999999999988      56778889999999 99999999999999999999998877        


Q ss_pred             HHHhccCCCCcHHHHHHHcCCHHHHHHHHhcCCCCCCCCCCCCCCHHHHHHHhcCCHHHHHHHHhcCCC
Q 042183          107 MIRMMNKEKHTALHEAVFHKIVDVVKILTREDLDYPYSANNYNKTPLCMVAEYEHSSHMVVAILKNCTS  175 (179)
Q Consensus       107 ~~~~~~~~g~t~l~~A~~~g~~~~~~~Ll~~~~~~~~~~~~~g~tpl~~A~~~~~~~~~~~~Ll~~g~~  175 (179)
                          ++..|.||||+|+..|+.+++++|++.|+++. ..+..|.||+++|+. .|+.+++++|++++++
T Consensus        98 ----~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~-~~~~~g~t~l~~A~~-~~~~~~~~~L~~~~~~  160 (167)
T 3v31_A           98 ----YDWNGGTPLLYAVHGNHVKCVKMLLESGADPT-IETDSGYNSMDLAVA-LGYRSVQQVIESHLLK  160 (167)
T ss_dssp             ----CCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTT-CCCTTSCCHHHHHHH-HTCHHHHHHHHHHHHH
T ss_pred             ----CCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCC-CcCCCCCCHHHHHHH-cCcHHHHHHHHHHHHH
Confidence                89999999999999999999999999999976 899999999999999 9999999999998754

>2rfm_A Putative ankyrin repeat protein TV1425; ANK repeat, protein binding; HET: BU2 GOL; 1.65A {Thermoplasma volcanium}

Probab=99.94  E-value=4.4e-26  Score=157.72  Aligned_cols=125  Identities=16%  Similarity=0.084  Sum_probs=116.9

Q ss_pred             ccCCHHHHHHHHcCChHHHHHHHHHHHHhhCcccccccCCCCCcHHHHHHHHcCCHHHHHHHHHhhcccCCchhhhhhHH
Q 042183           28 LQIDPNLFKAAAAGNLEPFKDMAREEILEICPSLLLQVNAKGDSRSLLVAAKFGHCDIVSVLIERAKLLQHEDEELESGM  107 (179)
Q Consensus        28 ~~~~~~l~~A~~~g~~~~~~~ll~~~~~~~~~~~~~~~~~~g~t~~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~~~~~  107 (179)
                      ....+|||.|+..|+.++++.|++      .+..++..|..|.| |||+|+..|+.+++++|+++|++++.         
T Consensus        66 ~~g~t~L~~A~~~~~~~~v~~Ll~------~g~~~~~~~~~g~t-~L~~A~~~~~~~~v~~Ll~~g~~~~~---------  129 (192)
T 2rfm_A           66 IEGSTALIWAVKNNRLGIAEKLLS------KGSNVNTKDFSGKT-PLMWSIIFGYSEMSYFLLEHGANVND---------  129 (192)
T ss_dssp             TTSCCHHHHHHHTTCHHHHHHHHH------HTCCTTCCCTTSCC-HHHHHHHHTCHHHHHHHHHTTCCSSC---------
T ss_pred             ccCccHHHHHHHcCCHHHHHHHHH------CCCCCCCCCCCCCc-HHHHHHHcCCHHHHHHHHHCCCCCCC---------
Confidence            446689999999999999999988      45677889999999 99999999999999999999998887         


Q ss_pred             HHhccCCCCcHHHHHHHcCCHHHHHHHHhcCCCCCCCCCCCCCCHHHHHHHhcCCHHHHHHHHhcC
Q 042183          108 IRMMNKEKHTALHEAVFHKIVDVVKILTREDLDYPYSANNYNKTPLCMVAEYEHSSHMVVAILKNC  173 (179)
Q Consensus       108 ~~~~~~~g~t~l~~A~~~g~~~~~~~Ll~~~~~~~~~~~~~g~tpl~~A~~~~~~~~~~~~Ll~~g  173 (179)
                         ++..|.||||+|+..|+.+++++|++.|+++. ..|..|.||+++|+. .|+.+++++|+++|
T Consensus       130 ---~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~-~~~~~g~t~l~~A~~-~~~~~~v~~Ll~~~  190 (192)
T 2rfm_A          130 ---RNLEGETPLIVASKYGRSEIVKKLLELGADIS-ARDLTGLTAEASARI-FGRQEVIKIFTEVR  190 (192)
T ss_dssp             ---CCTTCCCHHHHHHHHTCHHHHHHHHHTTCCTT-CBCTTSCBHHHHHHH-TTCHHHHHHHHHHH
T ss_pred             ---CCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCC-CcCCCCCCHHHHHHH-hCcHHHHHHHHhcc
Confidence               99999999999999999999999999999976 899999999999999 99999999999876

>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A

Probab=99.94  E-value=5.9e-26  Score=163.55  Aligned_cols=142  Identities=18%  Similarity=0.160  Sum_probs=110.9

Q ss_pred             ccCCHHHHHHHHcCChHHHHHHHHHHHHhhCcccccccCCCCCcHHHHHHHHcCCHHHHHHHHHhhc-ccCCchhh----
Q 042183           28 LQIDPNLFKAAAAGNLEPFKDMAREEILEICPSLLLQVNAKGDSRSLLVAAKFGHCDIVSVLIERAK-LLQHEDEE----  102 (179)
Q Consensus        28 ~~~~~~l~~A~~~g~~~~~~~ll~~~~~~~~~~~~~~~~~~g~t~~L~~A~~~g~~~~v~~ll~~~~-~~~~~~~~----  102 (179)
                      ....++||.|+..|+.++++.|++      .+..++..+..|.| |||+|+..|+.+++++|++++. ..+.....    
T Consensus        55 ~~g~t~L~~A~~~g~~~~v~~Ll~------~g~~~~~~~~~g~t-~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~  127 (253)
T 1yyh_A           55 RTGETALHLAARYSRSDAAKRLLE------ASADANIQDNMGRT-PLHAAVSADAQGVFQILIRNRATDLDARMHDGTTP  127 (253)
T ss_dssp             TTSCCHHHHHHHTTCHHHHHHHHH------TTCCTTCCCTTSCC-HHHHHHHHTCHHHHHHHHHSTTSCTTCCCTTCCCH
T ss_pred             CCCCcHHHHHHHcCCHHHHHHHHH------cCCCCCCCCCCCCC-HHHHHHHcCCHHHHHHHHHcCCCCccccCCCCCcH
Confidence            445688999999999999988887      55666777777777 8888888788888888777765 33321111    


Q ss_pred             -----------------hhhHHHHhccCCCCcHHHHHHHcCCHHHHHHHHhcCCCCCCCCCCCCCCHHHHHHHhcCCHHH
Q 042183          103 -----------------LESGMIRMMNKEKHTALHEAVFHKIVDVVKILTREDLDYPYSANNYNKTPLCMVAEYEHSSHM  165 (179)
Q Consensus       103 -----------------~~~~~~~~~~~~g~t~l~~A~~~g~~~~~~~Ll~~~~~~~~~~~~~g~tpl~~A~~~~~~~~~  165 (179)
                                       ..+..++.++..|+||||+|+..|+.+++++|++.|++++ ..|..|.||||+|+. .|+.++
T Consensus       128 L~~A~~~~~~~~v~~Ll~~g~~~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~-~~~~~g~tpL~~A~~-~~~~~~  205 (253)
T 1yyh_A          128 LILAARLAVEGMLEDLINSHADVNAVDDLGKSALHWAAAVNNVDAAVVLLKNGANKD-MQNNREETPLFLAAR-EGSYET  205 (253)
T ss_dssp             HHHHHHHTCSSHHHHHHHTTCCTTCBCTTSCBHHHHHHHHTCHHHHHHHHHTTCCTT-CCCTTSCCHHHHHHH-HTCHHH
T ss_pred             HHHHHHcChHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCC-CcCCCCCCHHHHHHH-CCCHHH
Confidence                             1122345578889999999999999999999999999976 788899999999999 999999


Q ss_pred             HHHHHhcCCCCCC
Q 042183          166 VVAILKNCTSVSH  178 (179)
Q Consensus       166 ~~~Ll~~g~~~~~  178 (179)
                      +++|+++|++++.
T Consensus       206 v~~Ll~~ga~~~~  218 (253)
T 1yyh_A          206 AKVLLDHFANRDI  218 (253)
T ss_dssp             HHHHHHTTCCTTC
T ss_pred             HHHHHHcCCCccc
Confidence            9999999988764

>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B

Probab=99.94  E-value=6.3e-26  Score=151.92  Aligned_cols=120  Identities=19%  Similarity=0.149  Sum_probs=65.1

Q ss_pred             cCCHHHHHHHHcCChHHHHHHHHHHHHhhCcccccccCCCCCcHHHHHHHHcCCHHHHHHHHHhhcccCCchhhhhhHHH
Q 042183           29 QIDPNLFKAAAAGNLEPFKDMAREEILEICPSLLLQVNAKGDSRSLLVAAKFGHCDIVSVLIERAKLLQHEDEELESGMI  108 (179)
Q Consensus        29 ~~~~~l~~A~~~g~~~~~~~ll~~~~~~~~~~~~~~~~~~g~t~~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~~~~~~  108 (179)
                      ...++||. +..|+.++++.|++      .+..++.+|..|.| |||+|+..|+.+++++|+++|++++.          
T Consensus        35 ~g~t~L~~-~~~~~~~~v~~Ll~------~g~~~~~~~~~g~t-~L~~A~~~~~~~~v~~Ll~~g~~~~~----------   96 (156)
T 1bd8_A           35 FGKTALQV-MMFGSTAIALELLK------QGASPNVQDTSGTS-PVHDAARTGFLDTLKVLVEHGADVNV----------   96 (156)
T ss_dssp             TSCCHHHH-SCTTCHHHHHHHHH------TTCCTTCCCTTSCC-HHHHHHHTTCHHHHHHHHHTTCCSCC----------
T ss_pred             CCCcHHHH-HHcCCHHHHHHHHH------CCCCCCCcCCCCCC-HHHHHHHcCcHHHHHHHHHcCCCCCC----------
Confidence            34455555 55555555555554      34444555555555 55555555555555555555555444          


Q ss_pred             HhccCCCCcHHHHHHHcCCHHHHHHHHhcCCCCCCCCCCCCCCHHHHHHHhcCCHHHHHHHHh
Q 042183          109 RMMNKEKHTALHEAVFHKIVDVVKILTREDLDYPYSANNYNKTPLCMVAEYEHSSHMVVAILK  171 (179)
Q Consensus       109 ~~~~~~g~t~l~~A~~~g~~~~~~~Ll~~~~~~~~~~~~~g~tpl~~A~~~~~~~~~~~~Ll~  171 (179)
                        ++..|+||||+|+..|+.+++++|++. +++. ..|..|.|||++|+. .|+.+++++|++
T Consensus        97 --~~~~g~t~L~~A~~~~~~~~v~~Ll~~-~~~~-~~~~~g~t~l~~A~~-~~~~~~v~~Ll~  154 (156)
T 1bd8_A           97 --PDGTGALPIHLAVQEGHTAVVSFLAAE-SDLH-RRDARGLTPLELALQ-RGAQDLVDILQG  154 (156)
T ss_dssp             --CCTTSCCHHHHHHHHTCHHHHHHHHTT-SCTT-CCCTTSCCHHHHHHH-SCCHHHHHHHHT
T ss_pred             --cCCCCCcHHHHHHHhChHHHHHHHHhc-cCCC-CcCCCCCCHHHHHHH-cCcHHHHHHHHh
Confidence              555555555555555555555555555 4443 455555555555555 555555555554

>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A

Probab=99.94  E-value=9.4e-26  Score=159.63  Aligned_cols=128  Identities=20%  Similarity=0.184  Sum_probs=94.3

Q ss_pred             CCHHHHHHHHcCChHHHHHHHHHHHHhhCc--ccccccCCCCCcHHHHHHHHcCCHHHHHHHHHhhcccCCchhhhhhHH
Q 042183           30 IDPNLFKAAAAGNLEPFKDMAREEILEICP--SLLLQVNAKGDSRSLLVAAKFGHCDIVSVLIERAKLLQHEDEELESGM  107 (179)
Q Consensus        30 ~~~~l~~A~~~g~~~~~~~ll~~~~~~~~~--~~~~~~~~~g~t~~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~~~~~  107 (179)
                      ..+|||.|+..|+.++++.|++      .+  ..++..+..|.| |||+|+..|+.+++++|+++|.+++.         
T Consensus        72 g~t~L~~A~~~~~~~~~~~Ll~------~g~~~~~~~~~~~g~t-~L~~A~~~~~~~~~~~Ll~~g~~~~~---------  135 (228)
T 2dzn_A           72 GWTPFHIACSVGNLEVVKSLYD------RPLKPDLNKITNQGVT-CLHLAVGKKWFEVSQFLIENGASVRI---------  135 (228)
T ss_dssp             SCCHHHHHHHHCCHHHHHHHHS------SSSCCCTTCCCTTCCC-HHHHHHHTTCHHHHHHHHHTTCCSCC---------
T ss_pred             CCCHHHHHHHcCCHHHHHHHHh------CCCCcccccCCcCCCC-HHHHHHHcCCHhHHHHHHHcCCCccc---------
Confidence            3455666666666665555554      22  445556666666 66666666666666666666665555         


Q ss_pred             HHhccCCCCcHHHHHHHcCCHHHHHHHHhcC-CCCCCCCCCCCCCHHHHHHHhcCCHHHHHHHH-hcCCCCCC
Q 042183          108 IRMMNKEKHTALHEAVFHKIVDVVKILTRED-LDYPYSANNYNKTPLCMVAEYEHSSHMVVAIL-KNCTSVSH  178 (179)
Q Consensus       108 ~~~~~~~g~t~l~~A~~~g~~~~~~~Ll~~~-~~~~~~~~~~g~tpl~~A~~~~~~~~~~~~Ll-~~g~~~~~  178 (179)
                         ++..|+||||+|+..|+.+++++|++.| ++++ ..|..|.||||+|+. .|+.+++++|+ +.|++++.
T Consensus       136 ---~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~-~~d~~g~t~L~~A~~-~~~~~~v~~Ll~~~ga~~~~  203 (228)
T 2dzn_A          136 ---KDKFNQIPLHRAASVGSLKLIELLCGLGKSAVN-WQDKQGWTPLFHALA-EGHGDAAVLLVEKYGAEYDL  203 (228)
T ss_dssp             ---CCTTSCCHHHHHHHTTCHHHHHHHHTTTCCCSC-CCCTTSCCHHHHHHH-TTCHHHHHHHHHHHCCCSCC
T ss_pred             ---cCCCCCCHHHHHHHcCCHHHHHHHHhcCccccc-CcCCCCCCHHHHHHH-cCCHHHHHHHHHhcCCCCCc
Confidence               7888999999999999999999999888 7765 788889999999999 99999999999 78888764

>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D

Probab=99.94  E-value=8.9e-26  Score=164.28  Aligned_cols=102  Identities=20%  Similarity=0.176  Sum_probs=83.6

Q ss_pred             ccccCCCCCcHHHHHHHHcCCHHHHHHHHHhhcccCCchhhhhhHHHHhccC-CCCcHHHHHHHcCCHHHHHHHHhcCCC
Q 042183           62 LLQVNAKGDSRSLLVAAKFGHCDIVSVLIERAKLLQHEDEELESGMIRMMNK-EKHTALHEAVFHKIVDVVKILTREDLD  140 (179)
Q Consensus        62 ~~~~~~~g~t~~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~~~~~~~~~~~-~g~t~l~~A~~~g~~~~~~~Ll~~~~~  140 (179)
                      ++..+..|.| |||+|+..|+.+++++|+++|++++.            ++. .|+||||+|+..|+.+++++|++.|++
T Consensus       151 ~~~~~~~g~t-~L~~A~~~g~~~~v~~Ll~~g~~~~~------------~~~~~g~tpL~~A~~~~~~~~v~~Ll~~gad  217 (282)
T 1oy3_D          151 LEAENYDGHT-PLHVAVIHKDAEMVRLLRDAGADLNK------------PEPTCGRTPLHLAVEAQAASVLELLLKAGAD  217 (282)
T ss_dssp             TTCCCTTSCC-HHHHHHHTTCHHHHHHHHHHTCCTTC------------CCTTTCCCHHHHHHHTTCHHHHHHHHHTTCC
T ss_pred             CCCcCCCCcC-HHHHHHHcCCHHHHHHHHHcCCCCCC------------CCCCCCcCHHHHHHHcCCHHHHHHHHHcCCC
Confidence            4455666777 77777777777777777777766655            664 499999999999999999999999999


Q ss_pred             CCCCCCCCCCCHHHHHHHhcCCHHHHHHHHhcCCCCCC
Q 042183          141 YPYSANNYNKTPLCMVAEYEHSSHMVVAILKNCTSVSH  178 (179)
Q Consensus       141 ~~~~~~~~g~tpl~~A~~~~~~~~~~~~Ll~~g~~~~~  178 (179)
                      ++ .+|..|.||||+|+. .|+.+++++|+++|++++.
T Consensus       218 ~~-~~d~~g~tpL~~A~~-~~~~~~v~~Ll~~ga~~~~  253 (282)
T 1oy3_D          218 PT-ARMYGGRTPLGSALL-RPNPILARLLRAHGAPEPE  253 (282)
T ss_dssp             TT-CCCTTSCCHHHHHHT-SSCHHHHHHHHHTTCCCCC
T ss_pred             Cc-ccccCCCCHHHHHHH-cCCcHHHHHHHHcCCCcCc
Confidence            76 889999999999999 9999999999999998864

>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D

Probab=99.94  E-value=1.4e-25  Score=163.28  Aligned_cols=146  Identities=22%  Similarity=0.239  Sum_probs=112.8

Q ss_pred             ccCCHHHHHHHHcCChHHHHHHHHHHHHhhCcccccccCCCCCcHHHHHHHHcCCHHHHHHHHHhhcccCCchhh-----
Q 042183           28 LQIDPNLFKAAAAGNLEPFKDMAREEILEICPSLLLQVNAKGDSRSLLVAAKFGHCDIVSVLIERAKLLQHEDEE-----  102 (179)
Q Consensus        28 ~~~~~~l~~A~~~g~~~~~~~ll~~~~~~~~~~~~~~~~~~g~t~~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~-----  102 (179)
                      ....+|||.|+..|+.++++.|++   ....+..++..+..|.| |||+|+..|+.+++++|+++|++++.....     
T Consensus         7 ~~g~t~L~~A~~~g~~~~v~~Ll~---~g~~~~~~~~~~~~g~t-~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~g~tpL   82 (282)
T 1oy3_D            7 EDGDTALHLAVIHQHEPFLDFLLG---FSAGHEYLDLQNDLGQT-ALHLAAILGEASTVEKLYAAGAGVLVAERGGHTAL   82 (282)
T ss_dssp             TTCCCHHHHHHHTTCHHHHHHHHH---HHTTSGGGGCCCTTSCC-HHHHHHHHTCHHHHHHHHHTTCCSSCCCTTSCCHH
T ss_pred             CCCCcHHHHHHHcCCHHHHHHHHh---cCCCcccccccCCCCCC-HHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCHH
Confidence            345577888888888888888876   22233346777788888 888888888888888888888776653221     


Q ss_pred             --------------hh-------------------------------------------------hHHHHhccCCCCcHH
Q 042183          103 --------------LE-------------------------------------------------SGMIRMMNKEKHTAL  119 (179)
Q Consensus       103 --------------~~-------------------------------------------------~~~~~~~~~~g~t~l  119 (179)
                                    +.                                                 ...++.++..|.|||
T Consensus        83 ~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L  162 (282)
T 1oy3_D           83 HLACRVRAHTCACVLLQPRPSHPRDASDTYLTQSQDCTPDTSHAPAAVDSQPNPENEEEPRDEDWRLQLEAENYDGHTPL  162 (282)
T ss_dssp             HHHTTTTCHHHHHHHSSSCCSSCCCC-----------------------------------CCCGGGGTTCCCTTSCCHH
T ss_pred             HHHHHcCCcchhHhhhccCCCCchhhHHHHhhcccccCcchhcchhhhccccccchhhhhhhhhhhhcCCCcCCCCcCHH
Confidence                          00                                                 112455677899999


Q ss_pred             HHHHHcCCHHHHHHHHhcCCCCCCCCC-CCCCCHHHHHHHhcCCHHHHHHHHhcCCCCCCC
Q 042183          120 HEAVFHKIVDVVKILTREDLDYPYSAN-NYNKTPLCMVAEYEHSSHMVVAILKNCTSVSHR  179 (179)
Q Consensus       120 ~~A~~~g~~~~~~~Ll~~~~~~~~~~~-~~g~tpl~~A~~~~~~~~~~~~Ll~~g~~~~~r  179 (179)
                      |+|+..|+.+++++|++.|++++ ..+ ..|.||||+|+. .|+.+++++|+++|++++.+
T Consensus       163 ~~A~~~g~~~~v~~Ll~~g~~~~-~~~~~~g~tpL~~A~~-~~~~~~v~~Ll~~gad~~~~  221 (282)
T 1oy3_D          163 HVAVIHKDAEMVRLLRDAGADLN-KPEPTCGRTPLHLAVE-AQAASVLELLLKAGADPTAR  221 (282)
T ss_dssp             HHHHHTTCHHHHHHHHHHTCCTT-CCCTTTCCCHHHHHHH-TTCHHHHHHHHHTTCCTTCC
T ss_pred             HHHHHcCCHHHHHHHHHcCCCCC-CCCCCCCcCHHHHHHH-cCCHHHHHHHHHcCCCCccc
Confidence            99999999999999999999987 555 459999999999 99999999999999988753

>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A

Probab=99.94  E-value=2.3e-25  Score=158.01  Aligned_cols=128  Identities=20%  Similarity=0.247  Sum_probs=92.7

Q ss_pred             CCHHHHHHHHcCChHHHHHHHHHHHHhhCcccccccCCCCCcHHHHHHHHcCCHHHHHHHHHhhcccCCchhhhhhHHHH
Q 042183           30 IDPNLFKAAAAGNLEPFKDMAREEILEICPSLLLQVNAKGDSRSLLVAAKFGHCDIVSVLIERAKLLQHEDEELESGMIR  109 (179)
Q Consensus        30 ~~~~l~~A~~~g~~~~~~~ll~~~~~~~~~~~~~~~~~~g~t~~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~~~~~~~  109 (179)
                      .+++||.|+..|+.+.++.++.     ..+..++..+..|.| |||+|+..|+.+++++|++++.+++.           
T Consensus         6 ~~~~l~~A~~~g~~~~v~~ll~-----~~~~~~~~~~~~g~t-~L~~A~~~g~~~~v~~Ll~~g~~~~~-----------   68 (231)
T 3aji_A            6 SNIMICNLAYSGKLDELKERIL-----ADKSLATRTDQDSRT-ALHWACSAGHTEIVEFLLQLGVPVND-----------   68 (231)
T ss_dssp             SSSHHHHHHHHTCHHHHHHHHH-----HCGGGGGCCCTTSCC-HHHHHHHHTCHHHHHHHHHTTCCSCC-----------
T ss_pred             ccchHHHHHHhCCHHHHHHHHH-----hchhhhhcCCCCCCC-HHHHHHHcCcHHHHHHHHHhCCCCCC-----------
Confidence            4578999999999999999876     456667888999999 99999999999999999999988877           


Q ss_pred             hccCCCCcHHHHHHHcCCHHHHHHHHhcCCCCCCCCCCCCCCHHHHHHHhcCCHHHHHHHHhcCCCCC
Q 042183          110 MMNKEKHTALHEAVFHKIVDVVKILTREDLDYPYSANNYNKTPLCMVAEYEHSSHMVVAILKNCTSVS  177 (179)
Q Consensus       110 ~~~~~g~t~l~~A~~~g~~~~~~~Ll~~~~~~~~~~~~~g~tpl~~A~~~~~~~~~~~~Ll~~g~~~~  177 (179)
                       ++..|+||||+|+..|+.+++++|++.|++++ ..+..|.||||+|+. .|+.+++++|+++|++++
T Consensus        69 -~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~-~~~~~g~t~L~~A~~-~~~~~~~~~Ll~~g~~~~  133 (231)
T 3aji_A           69 -KDDAGWSPLHIAASAGXDEIVKALLVKGAHVN-AVNQNGCTPLHYAAS-KNRHEIAVMLLEGGANPD  133 (231)
T ss_dssp             -CCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTT-CCCTTSCCHHHHHHH-TTCHHHHHHHHHTTCCTT
T ss_pred             -cCCCCCCHHHHHHHcCHHHHHHHHHHcCCCCC-CCCCCCCCHHHHHHH-cCCHHHHHHHHHcCCCCC
Confidence             55555555555555555555555555555543 455555555555555 555555555555555443

>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo sapiens} SCOP: d.211.1.0 PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A 3twq_A 3twu_A 2y0i_S*

Probab=99.94  E-value=8.4e-26  Score=152.71  Aligned_cols=123  Identities=19%  Similarity=0.242  Sum_probs=113.2

Q ss_pred             CCHHHHHHHHcCChHHHHHHHHHHHHhhCcccccccCCCCCcHHHHHHHHcCCHHHHHHHHHhhcccCCchhhhhhHHHH
Q 042183           30 IDPNLFKAAAAGNLEPFKDMAREEILEICPSLLLQVNAKGDSRSLLVAAKFGHCDIVSVLIERAKLLQHEDEELESGMIR  109 (179)
Q Consensus        30 ~~~~l~~A~~~g~~~~~~~ll~~~~~~~~~~~~~~~~~~g~t~~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~~~~~~~  109 (179)
                      ..++||.|+..|+.++++.|++      .+..++.+|..|.| |||+|+..|+.+++++|+++|++++.           
T Consensus        42 g~t~L~~A~~~~~~~~v~~Ll~------~g~~~~~~~~~g~t-~L~~A~~~~~~~~v~~Ll~~g~~~~~-----------  103 (165)
T 3twr_A           42 QSTPLHFAAGYNRVSVVEYLLQ------HGADVHAKDKGGLV-PLHNACSYGHYEVAELLVKHGAVVNV-----------  103 (165)
T ss_dssp             CCCHHHHHHHTTCHHHHHHHHH------TTCCTTCCCTTSCC-HHHHHHHTTCHHHHHHHHHTTCCTTC-----------
T ss_pred             CCCHHHHHHHcChHHHHHHHHh------cCCCCCccCCCCCC-HHHHHHHcCcHHHHHHHHhCCCCCCC-----------
Confidence            4589999999999999999998      67788899999999 99999999999999999999998877           


Q ss_pred             hccCCCCcHHHHHHHcCCHHHHHHHHhcCCCCCCCCCCCCCCHHHHHHHhcCCHHHHHHHHhcCC
Q 042183          110 MMNKEKHTALHEAVFHKIVDVVKILTREDLDYPYSANNYNKTPLCMVAEYEHSSHMVVAILKNCT  174 (179)
Q Consensus       110 ~~~~~g~t~l~~A~~~g~~~~~~~Ll~~~~~~~~~~~~~g~tpl~~A~~~~~~~~~~~~Ll~~g~  174 (179)
                       ++..|+||||+|+..|+.+++++|++.|++++ .+|..|.||+++|+.  ++.+++++|+++|+
T Consensus       104 -~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~-~~~~~g~t~l~~a~~--~~~~i~~~L~~~gA  164 (165)
T 3twr_A          104 -ADLWKFTPLHEAAAKGKYEICKLLLQHGADPT-KKNRDGNTPLDLVKD--GDTDIQDLLRGDAA  164 (165)
T ss_dssp             -CCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTT-CCCTTSCCTGGGSCT--TCHHHHHHHHTC--
T ss_pred             -cCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCc-ccCCCCCChhHhHhc--CChHHHHHHhhccc
Confidence             89999999999999999999999999999976 899999999999655  78999999999885

>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B

Probab=99.94  E-value=1.6e-25  Score=149.90  Aligned_cols=126  Identities=17%  Similarity=0.248  Sum_probs=115.8

Q ss_pred             CHHHHHHHHcCChHHHHHHHHHHHHhhCcccccccCCCCCcHHHHHHHHcCCHHHHHHHHHhhcccCCchhhhhhHHHHh
Q 042183           31 DPNLFKAAAAGNLEPFKDMAREEILEICPSLLLQVNAKGDSRSLLVAAKFGHCDIVSVLIERAKLLQHEDEELESGMIRM  110 (179)
Q Consensus        31 ~~~l~~A~~~g~~~~~~~ll~~~~~~~~~~~~~~~~~~g~t~~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~~~~~~~~  110 (179)
                      .++|+.|+..|+.+.++.|++     ..+..++..+..|.| |||+ +..|+.+++++|+++|++++.            
T Consensus         3 ~~~L~~A~~~g~~~~v~~ll~-----~~~~~~~~~~~~g~t-~L~~-~~~~~~~~v~~Ll~~g~~~~~------------   63 (156)
T 1bd8_A            3 GDRLSGAAARGDVQEVRRLLH-----RELVHPDALNRFGKT-ALQV-MMFGSTAIALELLKQGASPNV------------   63 (156)
T ss_dssp             HHHHHHHHHHTCHHHHHHHHH-----TTCCCTTCCCTTSCC-HHHH-SCTTCHHHHHHHHHTTCCTTC------------
T ss_pred             chHHHHHHHhCCHHHHHHHHH-----hhCcCccccCCCCCc-HHHH-HHcCCHHHHHHHHHCCCCCCC------------
Confidence            478999999999999999987     334577889999999 9999 999999999999999998877            


Q ss_pred             ccCCCCcHHHHHHHcCCHHHHHHHHhcCCCCCCCCCCCCCCHHHHHHHhcCCHHHHHHHHhcCCCCCC
Q 042183          111 MNKEKHTALHEAVFHKIVDVVKILTREDLDYPYSANNYNKTPLCMVAEYEHSSHMVVAILKNCTSVSH  178 (179)
Q Consensus       111 ~~~~g~t~l~~A~~~g~~~~~~~Ll~~~~~~~~~~~~~g~tpl~~A~~~~~~~~~~~~Ll~~g~~~~~  178 (179)
                      ++..|.||||+|+..|+.+++++|++.|++++ ..|..|.||||+|+. .|+.+++++|+++ ++++.
T Consensus        64 ~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~-~~~~~g~t~L~~A~~-~~~~~~v~~Ll~~-~~~~~  128 (156)
T 1bd8_A           64 QDTSGTSPVHDAARTGFLDTLKVLVEHGADVN-VPDGTGALPIHLAVQ-EGHTAVVSFLAAE-SDLHR  128 (156)
T ss_dssp             CCTTSCCHHHHHHHTTCHHHHHHHHHTTCCSC-CCCTTSCCHHHHHHH-HTCHHHHHHHHTT-SCTTC
T ss_pred             cCCCCCCHHHHHHHcCcHHHHHHHHHcCCCCC-CcCCCCCcHHHHHHH-hChHHHHHHHHhc-cCCCC
Confidence            89999999999999999999999999999976 889999999999999 9999999999998 77653

>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1

Probab=99.94  E-value=3e-25  Score=163.07  Aligned_cols=142  Identities=23%  Similarity=0.185  Sum_probs=116.9

Q ss_pred             ccCCHHHHHHHHcCChHHHHHHHHHHHHhhCcccccccCCCCCcHHHHHHHHcCCHHHHHHHHHhhcccCCchhh-----
Q 042183           28 LQIDPNLFKAAAAGNLEPFKDMAREEILEICPSLLLQVNAKGDSRSLLVAAKFGHCDIVSVLIERAKLLQHEDEE-----  102 (179)
Q Consensus        28 ~~~~~~l~~A~~~g~~~~~~~ll~~~~~~~~~~~~~~~~~~g~t~~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~-----  102 (179)
                      ....+|||.|+..|+.++++.|++      .+..++..|..|.| |||+|+..|+.+++++|+++|++++.....     
T Consensus        71 ~~g~t~L~~A~~~g~~~~v~~Ll~------~ga~~~~~~~~g~t-pL~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~l  143 (299)
T 1s70_B           71 VDGLTALHQACIDDNVDMVKFLVE------NGANINQPDNEGWI-PLHAAASCGYLDIAEYLISQGAHVGAVNSEGDTPL  143 (299)
T ss_dssp             TTCCBHHHHHHHTTCHHHHHHHHH------TTCCTTCCCTTSCC-HHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHH
T ss_pred             CCCCCHHHHHHHcCCHHHHHHHHH------CCCCCCCCCCCCCc-HHHHHHHcCCHHHHHHHHhCCCCCCCcCCCCCCHH
Confidence            345588888888888888888877      66778888899999 999999999999999999998877653221     


Q ss_pred             ----------hhhHH-------H--------------------------HhccCCCCcHHHHHHHcCCHHHHHHHHhcCC
Q 042183          103 ----------LESGM-------I--------------------------RMMNKEKHTALHEAVFHKIVDVVKILTREDL  139 (179)
Q Consensus       103 ----------~~~~~-------~--------------------------~~~~~~g~t~l~~A~~~g~~~~~~~Ll~~~~  139 (179)
                                .....       +                          ...+..|.||||+|+..|+.+++++|++.|+
T Consensus       144 ~~A~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~  223 (299)
T 1s70_B          144 DIAEEEAMEELLQNEVNRQGVDIEAARKEEERIMLRDARQWLNSGHINDVRHAKSGGTALHVAAAKGYTEVLKLLIQARY  223 (299)
T ss_dssp             HHCCSHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCCCTTTCCCHHHHHHHHTCHHHHHHHHTTTC
T ss_pred             HHHHhcchHHHHHHHHhhcCCCchhhhhhhhhHHHHHHHHHHhccCcchhhhcCCCCCHHHHHHHCCcHHHHHHHHHcCC
Confidence                      00000       0                          0134679999999999999999999999999


Q ss_pred             CCCCCCCCCCCCHHHHHHHhcCCHHHHHHHHhcCCCCCC
Q 042183          140 DYPYSANNYNKTPLCMVAEYEHSSHMVVAILKNCTSVSH  178 (179)
Q Consensus       140 ~~~~~~~~~g~tpl~~A~~~~~~~~~~~~Ll~~g~~~~~  178 (179)
                      +++ ..|..|.||||+|+. .|+.+++++|+++|++++.
T Consensus       224 d~~-~~d~~g~tpL~~A~~-~~~~~~v~~Ll~~gad~~~  260 (299)
T 1s70_B          224 DVN-IKDYDGWTPLHAAAH-WGKEEACRILVENLCDMEA  260 (299)
T ss_dssp             CTT-CCCTTCCCHHHHHHH-TTCHHHHHHHHHTTCCTTC
T ss_pred             CCC-CcCCCCCcHHHHHHh-cCCHHHHHHHHHcCCCCCC
Confidence            987 899999999999999 9999999999999998864

>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A

Probab=99.94  E-value=1.6e-25  Score=161.24  Aligned_cols=134  Identities=17%  Similarity=0.179  Sum_probs=89.3

Q ss_pred             HHHHcCChHHHHHHHHHHHHhhCcccc-cccCCCCCcHHHHHHHHcCCHHHHHHHHHhhcccCCchhh------------
Q 042183           36 KAAAAGNLEPFKDMAREEILEICPSLL-LQVNAKGDSRSLLVAAKFGHCDIVSVLIERAKLLQHEDEE------------  102 (179)
Q Consensus        36 ~A~~~g~~~~~~~ll~~~~~~~~~~~~-~~~~~~g~t~~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~------------  102 (179)
                      .+...++.++++.|++      .+..+ +..|..|.| |||+|+..|+.+++++|+++|++++.....            
T Consensus        29 ~~~~~~~~~~v~~Ll~------~g~~~~~~~d~~g~t-~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~  101 (253)
T 1yyh_A           29 SEEEEDAPAVISDFIY------QGASLHNQTDRTGET-ALHLAARYSRSDAAKRLLEASADANIQDNMGRTPLHAAVSAD  101 (253)
T ss_dssp             -----------------------------CCCTTSCC-HHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHT
T ss_pred             hhhcCCChHHHHHHHH------ccCCcccccCCCCCc-HHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcC
Confidence            4788899999999987      33333 456899999 999999999999999999999888763221            


Q ss_pred             ---------hhh-HHHHhccCCCCcHHHHHHHcCCHHHHHHHHhcCCCCCCCCCCCCCCHHHHHHHhcCCHHHHHHHHhc
Q 042183          103 ---------LES-GMIRMMNKEKHTALHEAVFHKIVDVVKILTREDLDYPYSANNYNKTPLCMVAEYEHSSHMVVAILKN  172 (179)
Q Consensus       103 ---------~~~-~~~~~~~~~g~t~l~~A~~~g~~~~~~~Ll~~~~~~~~~~~~~g~tpl~~A~~~~~~~~~~~~Ll~~  172 (179)
                               ... ..++.++..|.||||+|+..|+.+++++|++.|++++ ..+..|.||||+|+. .|+.+++++|+++
T Consensus       102 ~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~-~~d~~g~t~L~~A~~-~~~~~~v~~Ll~~  179 (253)
T 1yyh_A          102 AQGVFQILIRNRATDLDARMHDGTTPLILAARLAVEGMLEDLINSHADVN-AVDDLGKSALHWAAA-VNNVDAAVVLLKN  179 (253)
T ss_dssp             CHHHHHHHHHSTTSCTTCCCTTCCCHHHHHHHHTCSSHHHHHHHTTCCTT-CBCTTSCBHHHHHHH-HTCHHHHHHHHHT
T ss_pred             CHHHHHHHHHcCCCCccccCCCCCcHHHHHHHcChHHHHHHHHHcCCCCC-CcCCCCCCHHHHHHH-cCCHHHHHHHHHc
Confidence                     011 1344556678888888888888888888888888876 778888888888888 8888888888888


Q ss_pred             CCCCCC
Q 042183          173 CTSVSH  178 (179)
Q Consensus       173 g~~~~~  178 (179)
                      |++++.
T Consensus       180 ga~~~~  185 (253)
T 1yyh_A          180 GANKDM  185 (253)
T ss_dssp             TCCTTC
T ss_pred             CCCCCC
Confidence            887754

>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A*

Probab=99.94  E-value=4.4e-26  Score=165.81  Aligned_cols=130  Identities=16%  Similarity=0.092  Sum_probs=116.0

Q ss_pred             ccCCHHHHHHHHcCChHHHHHHHHHHHHhhCcccccccCC--------------CCCcHHHHHHHHcCCHHHHHHHHH--
Q 042183           28 LQIDPNLFKAAAAGNLEPFKDMAREEILEICPSLLLQVNA--------------KGDSRSLLVAAKFGHCDIVSVLIE--   91 (179)
Q Consensus        28 ~~~~~~l~~A~~~g~~~~~~~ll~~~~~~~~~~~~~~~~~--------------~g~t~~L~~A~~~g~~~~v~~ll~--   91 (179)
                      ....+|||.|+..|+.++++.|++      .+..++..+.              .|.| |||+|+..|+.+++++|++  
T Consensus        99 ~~g~tpL~~A~~~g~~~~v~~Ll~------~ga~~~~~~~~~~~~~~~~~~~~~~g~t-pL~~A~~~g~~~~v~~Ll~~~  171 (273)
T 2pnn_A           99 YKGQTALHIAIERRNMTLVTLLVE------NGADVQAAANGDFFKKTKGRPGFYFGEL-PLSLAACTNQLAIVKFLLQNS  171 (273)
T ss_dssp             TTTCCHHHHHHHTTCHHHHHHHHH------TTCCTTCCBCSGGGSSCSSSCCCCSCBS-HHHHHHHTTCHHHHHHHHHCS
T ss_pred             CCCCCHHHHHHHcCCHHHHHHHHH------CCCCcCccccccccccccccccccCCCC-HHHHHHHcCCHHHHHHHHhcc
Confidence            356799999999999999999998      5667777776              7999 9999999999999999999  


Q ss_pred             -hhcccCCchhhhhhHHHHhccCCCCcHHHHHHHcCC---------HHHHHHHHhcCCCCC------CCCCCCCCCHHHH
Q 042183           92 -RAKLLQHEDEELESGMIRMMNKEKHTALHEAVFHKI---------VDVVKILTREDLDYP------YSANNYNKTPLCM  155 (179)
Q Consensus        92 -~~~~~~~~~~~~~~~~~~~~~~~g~t~l~~A~~~g~---------~~~~~~Ll~~~~~~~------~~~~~~g~tpl~~  155 (179)
                       +|++++.            +|..|+||||+|+..|+         .+++++|++.|++++      ...|..|.||||+
T Consensus       172 ~~gad~~~------------~d~~g~tpLh~A~~~~~~~~~~~~~~~~~v~~Ll~~ga~~n~~~~~~~~~d~~g~TpL~~  239 (273)
T 2pnn_A          172 WQPADISA------------RDSVGNTVLHALVEVADNTVDNTKFVTSMYNEILILGAKLHPTLKLEEITNRKGLTPLAL  239 (273)
T ss_dssp             SCCCCTTC------------CCTTSCCHHHHHHHHCCSCHHHHHHHHHHHHHHHHHHHHHCTTCCGGGCCCTTSCCHHHH
T ss_pred             cCCCCcee------------eCCCCCcHHHHHHHccCcchhHHHHHHHHHHHHHHhhhhcccccccccccCCCCCCHHHH
Confidence             8888877            99999999999999998         799999999998875      2589999999999


Q ss_pred             HHHhcCCHHHHHHHHhcCC-CCC
Q 042183          156 VAEYEHSSHMVVAILKNCT-SVS  177 (179)
Q Consensus       156 A~~~~~~~~~~~~Ll~~g~-~~~  177 (179)
                      |+. .|+.+++++|+++|+ |+.
T Consensus       240 A~~-~g~~~iv~~Ll~~ga~dp~  261 (273)
T 2pnn_A          240 AAS-SGKIGVLAYILQREIHEPE  261 (273)
T ss_dssp             HHH-TTCHHHHHHHHHHHTC---
T ss_pred             HHH-hChHHHHHHHHHCCCCCch
Confidence            999 999999999999997 664

>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A

Probab=99.94  E-value=4.6e-25  Score=155.66  Aligned_cols=125  Identities=18%  Similarity=0.135  Sum_probs=99.6

Q ss_pred             CHHHHHHHHcCChHHHHHHHHHHHHhhCcccccccCCCCCcHHHHHHHHcCCHHHHHHHHHhhcccCCchhhhhhHHHHh
Q 042183           31 DPNLFKAAAAGNLEPFKDMAREEILEICPSLLLQVNAKGDSRSLLVAAKFGHCDIVSVLIERAKLLQHEDEELESGMIRM  110 (179)
Q Consensus        31 ~~~l~~A~~~g~~~~~~~ll~~~~~~~~~~~~~~~~~~g~t~~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~~~~~~~~  110 (179)
                      .++||.|+..|+.++++.|++      .+..++..+..|.| |||+|+..|+.+++++|+++|++++.            
T Consensus        93 ~t~L~~A~~~~~~~~~~~Ll~------~g~~~~~~~~~g~t-~L~~A~~~~~~~~v~~Ll~~g~~~~~------------  153 (223)
T 2f8y_A           93 TTPLILAARLAVEGMLEDLIN------SHADVNAVDDLGKS-ALHWAAAVNNVDAAVVLLKNGANKDM------------  153 (223)
T ss_dssp             CCHHHHHHHHTCHHHHHHHHH------TTCCTTCBCTTSCB-HHHHHHHTTCHHHHHHHHHTTCCTTC------------
T ss_pred             CcHHHHHHHhCcHHHHHHHHH------cCCCCcCcCCCCCc-HHHHHHHcCCHHHHHHHHHcCCCCCC------------
Confidence            355555555555555555554      44555666666777 77777777777777777777666655            


Q ss_pred             ccCCCCcHHHHHHHcCCHHHHHHHHhcCCCCCCCCCCCCCCHHHHHHHhcCCHHHHHHHHhcCCCC
Q 042183          111 MNKEKHTALHEAVFHKIVDVVKILTREDLDYPYSANNYNKTPLCMVAEYEHSSHMVVAILKNCTSV  176 (179)
Q Consensus       111 ~~~~g~t~l~~A~~~g~~~~~~~Ll~~~~~~~~~~~~~g~tpl~~A~~~~~~~~~~~~Ll~~g~~~  176 (179)
                      ++..|.||||+|+..|+.+++++|++.|+++. ..+..|.||+++|+. .++.+++++|+++|+..
T Consensus       154 ~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~-~~~~~g~t~l~~A~~-~~~~~i~~~L~~~g~~~  217 (223)
T 2f8y_A          154 QNNREETPLFLAAREGSYETAKVLLDHFANRD-ITDHMDRLPRDIAQE-RMHHDIVRLLDEYNLVR  217 (223)
T ss_dssp             CCTTCCCHHHHHHHHTCHHHHHHHHHTTCCTT-CCCTTCCCHHHHHHH-TTCHHHHHHHHHTTCSS
T ss_pred             cCCCCcCHHHHHHHcCCHHHHHHHHHcCCCCc-cccccCCCHHHHHHH-hcchHHHHHHHHcCCCc
Confidence            88999999999999999999999999999976 889999999999999 99999999999999754

>4b93_B Ankyrin repeat domain-containing protein 27; endocytosis, exocytosis, snare; 2.00A {Homo sapiens}

Probab=99.94  E-value=1.1e-25  Score=163.70  Aligned_cols=132  Identities=22%  Similarity=0.264  Sum_probs=116.1

Q ss_pred             HHHHHHHHcCChHHHHHHHHH------------------------------------HHHhhCcccccccCCCCCcHHHH
Q 042183           32 PNLFKAAAAGNLEPFKDMARE------------------------------------EILEICPSLLLQVNAKGDSRSLL   75 (179)
Q Consensus        32 ~~l~~A~~~g~~~~~~~ll~~------------------------------------~~~~~~~~~~~~~~~~g~t~~L~   75 (179)
                      ++|+.|+..|+.++|+.|++.                                    ..+...+..++..|.+|.| |||
T Consensus        13 ~~L~~A~~~G~~~~v~~LL~~~~~~~~~~~~~~~~~~~~~~t~L~~a~~~~~~~~~v~~Ll~~Gadvn~~d~~G~T-pLh   91 (269)
T 4b93_B           13 EKLLRAVADGDLEMVRYLLEWTEEDLEDAEDTVSAADPEFCHPLCQCPKCAPAQKRLAKVPASGLGVNVTSQDGSS-PLH   91 (269)
T ss_dssp             HHHHHHHHTTCHHHHHHHHTCC----------------------------------------CCCCTTCCCTTSCC-HHH
T ss_pred             hHHHHHHHcCCHHHHHHHHHCCCcccccccccccccCccCCCHHHHHHHhCCHHHHHHHHHHCCCCCCCcCCCCCC-HHH
Confidence            568888888888888888740                                    0112245667889999999 999


Q ss_pred             HHHHcCCHHHHHHHHHhhcccCCchhhhhhHHHHhccCCCCcHHHHHHHcCCHHHHHHHHhcCCCCCCCCCCCCCCHHHH
Q 042183           76 VAAKFGHCDIVSVLIERAKLLQHEDEELESGMIRMMNKEKHTALHEAVFHKIVDVVKILTREDLDYPYSANNYNKTPLCM  155 (179)
Q Consensus        76 ~A~~~g~~~~v~~ll~~~~~~~~~~~~~~~~~~~~~~~~g~t~l~~A~~~g~~~~~~~Ll~~~~~~~~~~~~~g~tpl~~  155 (179)
                      +|+..|+.+++++|++.+++++.            ++..|.||+|+|+..++.+++++|++.|++++ .+|..|.||||+
T Consensus        92 ~A~~~g~~~~v~~Ll~~~a~~~~------------~~~~g~t~l~~a~~~~~~~~~~~Ll~~g~~~n-~~d~~g~TpL~~  158 (269)
T 4b93_B           92 VAALHGRADLIPLLLKHGANAGA------------RNADQAVPLHLACQQGHFQVVKCLLDSNAKPN-KKDLSGNTPLIY  158 (269)
T ss_dssp             HHHHTTCTTHHHHHHHTTCCTTC------------CCTTCCCHHHHHHHHTCHHHHHHHHHTTCCSC-CCCTTCCCHHHH
T ss_pred             HHHHcCcHHHHHHHHhcCCCcCc------------cCCCCCCccccccccChHHHHHHHHHCCCCCC-CCCCCCCCHHHH
Confidence            99999999999999999998877            89999999999999999999999999999986 899999999999


Q ss_pred             HHHhcCCHHHHHHHHhcCCCCCC
Q 042183          156 VAEYEHSSHMVVAILKNCTSVSH  178 (179)
Q Consensus       156 A~~~~~~~~~~~~Ll~~g~~~~~  178 (179)
                      |+. .|+.+++++|+++|++++.
T Consensus       159 A~~-~g~~~~v~~Ll~~gadvn~  180 (269)
T 4b93_B          159 ACS-GGHHELVALLLQHGASINA  180 (269)
T ss_dssp             HHH-TTCGGGHHHHHHTTCCTTC
T ss_pred             HHH-CCCHHHHHHHHHCCCCCCc
Confidence            999 9999999999999999864

>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis}

Probab=99.94  E-value=4e-25  Score=153.65  Aligned_cols=129  Identities=22%  Similarity=0.202  Sum_probs=94.7

Q ss_pred             cCCHHHHHHHHcCChHHHHHHHHHHHHhhCcccccccCCCCCcHHHHHHHHcCCHHHHHHHHHhh-cccCCchhhhhhHH
Q 042183           29 QIDPNLFKAAAAGNLEPFKDMAREEILEICPSLLLQVNAKGDSRSLLVAAKFGHCDIVSVLIERA-KLLQHEDEELESGM  107 (179)
Q Consensus        29 ~~~~~l~~A~~~g~~~~~~~ll~~~~~~~~~~~~~~~~~~g~t~~L~~A~~~g~~~~v~~ll~~~-~~~~~~~~~~~~~~  107 (179)
                      ...+|||.|+..|+.++++.|++      .+..++..+..|.| |||+|+..|+.+++++|++.+ ...+.         
T Consensus        38 ~g~t~L~~A~~~~~~~~v~~Ll~------~g~~~~~~~~~g~t-~l~~A~~~~~~~~~~~Ll~~~~~~~~~---------  101 (201)
T 3hra_A           38 EGNTPLNIAVHNNDIEIAKALID------RGADINLQNSISDS-PYLYAGAQGRTEILAYMLKHATPDLNK---------  101 (201)
T ss_dssp             TSCCHHHHHHHHTCHHHHHHHHH------TTCCTTCCCTTSCC-HHHHHHHTTCHHHHHHHHHHSCCCTTC---------
T ss_pred             CCCCHHHHHHHcCCHHHHHHHHH------cCCCCCCCCCCCCC-HHHHHHHcCCHHHHHHHHhccCccccc---------
Confidence            34578888888888888888877      56667777778888 888888888888888888443 34444         


Q ss_pred             HHhccCCCCcHHHHHHHcCCHHHHHHHHhcC-CCCCCCCCCCCCCHHHHHHHhcCC-----HHHHHHHHhcCCCCCC
Q 042183          108 IRMMNKEKHTALHEAVFHKIVDVVKILTRED-LDYPYSANNYNKTPLCMVAEYEHS-----SHMVVAILKNCTSVSH  178 (179)
Q Consensus       108 ~~~~~~~g~t~l~~A~~~g~~~~~~~Ll~~~-~~~~~~~~~~g~tpl~~A~~~~~~-----~~~~~~Ll~~g~~~~~  178 (179)
                         ++..|.||||+|+..|+.+++++|++.| ++++ ..+..|.||||+|+. .+.     .+++++|+++|++++.
T Consensus       102 ---~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~-~~~~~g~t~L~~A~~-~~~~~~~~~~~v~~Ll~~ga~~~~  173 (201)
T 3hra_A          102 ---HNRYGGNALIPAAEKGHIDNVKLLLEDGREDID-FQNDFGYTALIEAVG-LREGNQLYQDIVKLLMENGADQSI  173 (201)
T ss_dssp             ---CCTTSCCSHHHHHHTTCHHHHHHHHHHCCCCTT-CCCTTSCCHHHHHHH-SSCCSHHHHHHHHHHHHTTCCTTC
T ss_pred             ---ccCCCCcHHHHHHHcCCHHHHHHHHHcCCCCcC-CCCCCCCCHHHHHHH-hccchhhHHHHHHHHHHCCCCCCc
Confidence               6667777777777777777777777777 5544 677777777777777 666     7777777777776653

>1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene family, nuclear protein, phosphorylation, disease mutation, polymorphism; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.211.1.1 PDB: 4a63_B

Probab=99.93  E-value=2.1e-26  Score=164.72  Aligned_cols=127  Identities=17%  Similarity=0.106  Sum_probs=116.3

Q ss_pred             CCHHHHHHHHcCChHHHHHHHHHHHHhhCcccccccCCCCCcHHHHHHHHcCCHHHHHHHHHhhcccCCchhhhhhHHHH
Q 042183           30 IDPNLFKAAAAGNLEPFKDMAREEILEICPSLLLQVNAKGDSRSLLVAAKFGHCDIVSVLIERAKLLQHEDEELESGMIR  109 (179)
Q Consensus        30 ~~~~l~~A~~~g~~~~~~~ll~~~~~~~~~~~~~~~~~~g~t~~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~~~~~~~  109 (179)
                      ..++||.|+..|+.++++.|++      .+..++.+|..|.| |||+|+..|+.+++++|+++|++++.           
T Consensus        37 ~~t~L~~A~~~g~~~~v~~Ll~------~g~~~~~~d~~g~t-~L~~A~~~g~~~~v~~Ll~~ga~~~~-----------   98 (239)
T 1ycs_B           37 PLALLLDSSLEGEFDLVQRIIY------EVDDPSLPNDEGIT-ALHNAVCAGHTEIVKFLVQFGVNVNA-----------   98 (239)
T ss_dssp             CHHHHHHHHHHTCHHHHHHHTS------TTSSCCCCCTTSCC-HHHHHHHHTCHHHHHHHHHHTCCTTC-----------
T ss_pred             hhHHHHHHHHcCCHHHHHHHHH------cCCCCCCcCCCCCC-HHHHHHHcCCHHHHHHHHHcCCCCCc-----------
Confidence            3588999999999999999987      56688899999999 99999999999999999999998887           


Q ss_pred             hccCCCCcHHHHHHHcCCHHHHHHHHhcCCCCCCCCCCCCC-CHHHHH--HHhcCCHHHHHHHHhcCCCCC
Q 042183          110 MMNKEKHTALHEAVFHKIVDVVKILTREDLDYPYSANNYNK-TPLCMV--AEYEHSSHMVVAILKNCTSVS  177 (179)
Q Consensus       110 ~~~~~g~t~l~~A~~~g~~~~~~~Ll~~~~~~~~~~~~~g~-tpl~~A--~~~~~~~~~~~~Ll~~g~~~~  177 (179)
                       +|..|+||||+|+..|+.+++++|++.|++++ ..+..|. ||||+|  +. .|+.+++++|+++|++++
T Consensus        99 -~d~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~-~~~~~~~~t~l~~a~~~~-~g~~~~~~~Ll~~~a~~~  166 (239)
T 1ycs_B           99 -ADSDGWTPLHCAASCNNVQVCKFLVESGAAVF-AMTYSDMQTAADKCEEME-EGYTQCSQFLYGVQEKMG  166 (239)
T ss_dssp             -CCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTT-CCCSSSCCCHHHHCCSSS-TTCCCHHHHHHHHHHHTT
T ss_pred             -cCCCCCCHHHHHHHcCCHHHHHHHHHcCCCcc-eecCCCCcchHHHHHHhh-hccHHHHHHHHHhhhccc
Confidence             99999999999999999999999999999987 6777776 999999  78 899999999999987654

>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A

Probab=99.93  E-value=5.1e-25  Score=156.99  Aligned_cols=142  Identities=12%  Similarity=0.115  Sum_probs=98.9

Q ss_pred             ccCCHHHHHHHHcCChHHHHHHHHHHHHhhCcccccccCCCCCcHHHHHHHHcCCHHHHHHHHHhhc----ccCCchhh-
Q 042183           28 LQIDPNLFKAAAAGNLEPFKDMAREEILEICPSLLLQVNAKGDSRSLLVAAKFGHCDIVSVLIERAK----LLQHEDEE-  102 (179)
Q Consensus        28 ~~~~~~l~~A~~~g~~~~~~~ll~~~~~~~~~~~~~~~~~~g~t~~L~~A~~~g~~~~v~~ll~~~~----~~~~~~~~-  102 (179)
                      ....+|||.|+..|+.++++.|++      .+..++..+..|.| |||+|+..|+.+++++|++.+.    ..+..... 
T Consensus        44 ~~g~t~L~~A~~~~~~~~v~~Ll~------~g~~~~~~~~~g~t-~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~g  116 (241)
T 1k1a_A           44 NLRQTPLHLAVITTLPSVVRLLVT------AGASPMALDRHGQT-AAHLACEHRSPTCLRALLDSAAPGTLDLEARNYDG  116 (241)
T ss_dssp             TTSCCHHHHHHHTTCHHHHHHHHH------TTCCTTCCCTTSCC-HHHHHHHTTCHHHHHHHHHHSCTTSCCTTCCCTTS
T ss_pred             ccCCCHHHHHHHcCCHHHHHHHHH------cCCCccccCCCCCC-HHHHHHHcCCHHHHHHHHHcCCCccccccccCcCC
Confidence            334567777777777777777776      44455556666666 6666666666666666666654    22221000 


Q ss_pred             --------------------hhhHHHHhcc-CCCCcHHHHHHHcCCHHHHHHHHhcCCCCCCCCCCCCCCHHHHHHHhcC
Q 042183          103 --------------------LESGMIRMMN-KEKHTALHEAVFHKIVDVVKILTREDLDYPYSANNYNKTPLCMVAEYEH  161 (179)
Q Consensus       103 --------------------~~~~~~~~~~-~~g~t~l~~A~~~g~~~~~~~Ll~~~~~~~~~~~~~g~tpl~~A~~~~~  161 (179)
                                          ..+..++..+ ..|.||||+|+..|+.+++++|++.|++++ ..|..|.||||+|+. .|
T Consensus       117 ~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~-~~~~~g~t~L~~A~~-~~  194 (241)
T 1k1a_A          117 LTALHVAVNTECQETVQLLLERGADIDAVDIKSGRSPLIHAVENNSLSMVQLLLQHGANVN-AQMYSGSSALHSASG-RG  194 (241)
T ss_dssp             CCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTT-CBCTTSCBHHHHHHH-HT
T ss_pred             CcHHHHHHHcCCHHHHHHHHHcCCCcccccccCCCcHHHHHHHcCCHHHHHHHHHcCCCCC-CcCCCCCCHHHHHHH-cC
Confidence                                0111122255 678899999999999999999999988876 788889999999999 99


Q ss_pred             CHHHHHHHHhcCCCCCC
Q 042183          162 SSHMVVAILKNCTSVSH  178 (179)
Q Consensus       162 ~~~~~~~Ll~~g~~~~~  178 (179)
                      +.+++++|+++|++++.
T Consensus       195 ~~~~v~~Ll~~ga~~~~  211 (241)
T 1k1a_A          195 LLPLVRTLVRSGADSSL  211 (241)
T ss_dssp             CHHHHHHHHHTTCCTTC
T ss_pred             CHHHHHHHHhcCCCCCC
Confidence            99999999999988764

>3c5r_A BARD-1, BRCA1-associated ring domain protein 1; ankyrin repeat, helix, extended loop, four repeat, PR ANK repeat, disease mutation, metal-binding; 2.00A {Homo sapiens} SCOP: k.37.1.1

Probab=99.93  E-value=1.2e-26  Score=152.47  Aligned_cols=130  Identities=20%  Similarity=0.250  Sum_probs=114.5

Q ss_pred             CccccCCHHHHHHHHcCChHHHHHHHHHHHHhhCcccccccCCCCCcHHHHHHHHcCCHHHHHHHHHhhcccCCchhhhh
Q 042183           25 ISQLQIDPNLFKAAAAGNLEPFKDMAREEILEICPSLLLQVNAKGDSRSLLVAAKFGHCDIVSVLIERAKLLQHEDEELE  104 (179)
Q Consensus        25 ~~~~~~~~~l~~A~~~g~~~~~~~ll~~~~~~~~~~~~~~~~~~g~t~~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~~  104 (179)
                      .......++||.|+..|+.+.++.|++      .+..++.+|..|.| |||+|+..|+.+++++|++++++++.      
T Consensus         5 ~~~~~g~t~L~~A~~~~~~~~~~~Ll~------~g~~~~~~~~~g~t-~L~~A~~~~~~~~~~~Ll~~g~~~~~------   71 (137)
T 3c5r_A            5 FTNHRGETLLHIASIKGDIPSVEYLLQ------NGSDPNVKDHAGWT-PLHEACNHGHLKVVELLLQHKALVNT------   71 (137)
T ss_dssp             CCCTTCCCHHHHHHHHTCHHHHHHHHH------TTCCSCCCCTTSCC-HHHHHHHTTCHHHHHHHHHTTCCTTC------
T ss_pred             CcCCCCCCHHHHHHHcCCHHHHHHHHH------cCCCCCcCCCCCCC-HHHHHHHcCCHHHHHHHHHcCCcccC------
Confidence            344556789999999999999999987      66778889999999 99999999999999999999998877      


Q ss_pred             hHHHHhccCCCCcHHHHHHHcCCHHHHHHHHhcCCCCCCCCCCCCCCHHHHHHHhcCCHHHHHHHHhcCCC
Q 042183          105 SGMIRMMNKEKHTALHEAVFHKIVDVVKILTREDLDYPYSANNYNKTPLCMVAEYEHSSHMVVAILKNCTS  175 (179)
Q Consensus       105 ~~~~~~~~~~g~t~l~~A~~~g~~~~~~~Ll~~~~~~~~~~~~~g~tpl~~A~~~~~~~~~~~~Ll~~g~~  175 (179)
                            ++..|+||||+|+..|+.+++++|++.|+++. .+|..|.||+++|+. .+..+++++|.+.+..
T Consensus        72 ------~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~-~~~~~g~tpl~~A~~-~~~~~~l~~l~~~~~s  134 (137)
T 3c5r_A           72 ------TGYQNDSPLHDAAKNGHVDIVKLLLSYGASRN-AVNIFGLRPVDYTDD-ESMKSLLLLPEKNESS  134 (137)
T ss_dssp             ------CCGGGCCHHHHHHHTTCHHHHHHHHHTTCCTT-CCCTTSCCGGGGCCC-HHHHHHHSCC------
T ss_pred             ------cCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCC-CCCCCCCCHHHHHhh-ccHHHHHhhccccccC
Confidence                  89999999999999999999999999999986 899999999999999 9999999888877644

>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A*

Probab=99.93  E-value=5.6e-25  Score=156.58  Aligned_cols=127  Identities=24%  Similarity=0.302  Sum_probs=92.4

Q ss_pred             HHHHHHHHcCChHHHHHHHHHHHHhhCcccccccCCCCCcHHHHHHHHcCCHHHHHHHHHhhcccCCchhhhhhHHHHhc
Q 042183           32 PNLFKAAAAGNLEPFKDMAREEILEICPSLLLQVNAKGDSRSLLVAAKFGHCDIVSVLIERAKLLQHEDEELESGMIRMM  111 (179)
Q Consensus        32 ~~l~~A~~~g~~~~~~~ll~~~~~~~~~~~~~~~~~~g~t~~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~~~~~~~~~  111 (179)
                      ++||.|+..|+.++++.|++     ..+..++..+..|.| |||+|+..|+.+++++|+++|.+++.            +
T Consensus        79 t~L~~A~~~~~~~~~~~Ll~-----~~~~~~~~~~~~g~t-~L~~A~~~~~~~~~~~Ll~~g~~~~~------------~  140 (237)
T 3b7b_A           79 TCLHLAAKKGHYEVVQYLLS-----NGQMDVNCQDDGGWT-PMIWATEYKHVDLVKLLLSKGSDINI------------R  140 (237)
T ss_dssp             CHHHHHHHTTCHHHHHHHHT-----TTCCCTTCCCTTSCC-HHHHHHHTTCHHHHHHHHHTTCCTTC------------C
T ss_pred             cHHHHHHHcCCHHHHHHHHh-----CCCCCcccCCCCCCC-HHHHHHHcCCHHHHHHHHHCCCCCCc------------c
Confidence            44444444444444444433     233455555666666 66666666666666666666665554            7


Q ss_pred             cCCCCcHHHHHHHcCCHHHHHHHHhcCCCCCCCCCCCCCCHHHHHHHhcCCHHHHHHHHhcCCCCCC
Q 042183          112 NKEKHTALHEAVFHKIVDVVKILTREDLDYPYSANNYNKTPLCMVAEYEHSSHMVVAILKNCTSVSH  178 (179)
Q Consensus       112 ~~~g~t~l~~A~~~g~~~~~~~Ll~~~~~~~~~~~~~g~tpl~~A~~~~~~~~~~~~Ll~~g~~~~~  178 (179)
                      +..|.||||+|+..|+.+++++|++.|++++ ..|..|.||||+|+. .|+.+++++|+++|++++.
T Consensus       141 ~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~-~~~~~g~t~L~~A~~-~~~~~~v~~Ll~~gad~~~  205 (237)
T 3b7b_A          141 DNEENICLHWAAFSGCVDIAEILLAAKCDLH-AVNIHGDSPLHIAAR-ENRYDCVVLFLSRDSDVTL  205 (237)
T ss_dssp             CTTSCCHHHHHHHHCCHHHHHHHHTTTCCTT-CCCTTCCCHHHHHHH-TTCHHHHHHHHTTTCCTTC
T ss_pred             CCCCCCHHHHHHHCCCHHHHHHHHHcCCCCC-CcCCCCCCHHHHHHH-hCCHhHHHHHHHcCCCCCc
Confidence            8889999999999999999999999998876 788889999999999 9999999999999988764

>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus}

Probab=99.93  E-value=5.7e-25  Score=156.14  Aligned_cols=141  Identities=15%  Similarity=0.091  Sum_probs=115.9

Q ss_pred             cccCCHHHHHHHHcCChHHHHHHHHHHHHhhCcccc-----cccCCCCCcHHHHHHHHcCCHHHHHHHHHhhcccCCchh
Q 042183           27 QLQIDPNLFKAAAAGNLEPFKDMAREEILEICPSLL-----LQVNAKGDSRSLLVAAKFGHCDIVSVLIERAKLLQHEDE  101 (179)
Q Consensus        27 ~~~~~~~l~~A~~~g~~~~~~~ll~~~~~~~~~~~~-----~~~~~~g~t~~L~~A~~~g~~~~v~~ll~~~~~~~~~~~  101 (179)
                      .....+|||.|+..|+.++++.|++      .+..+     +..|..|.| |||+|+..|+.+++++|+++|++++....
T Consensus        34 ~~~g~t~L~~A~~~g~~~~v~~Ll~------~~~~~~~~~~~~~~~~g~t-~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~  106 (232)
T 2rfa_A           34 GAMGETALHIAALYDNLEAAMVLME------AAPELVFEPMTSELYEGQT-ALHIAVINQNVNLVRALLARGASVSARAT  106 (232)
T ss_dssp             CTTSCCHHHHHHHTTCHHHHHHHHH------HCGGGGGCCCCSTTTTTCC-HHHHHHHTTCHHHHHHHHHTTCCTTCCCC
T ss_pred             CCCCCCHHHHHHHcCCHHHHHHHHH------cCchhccccccccCCCCcC-HHHHHHHcCCHHHHHHHHhCCCCCCcccC
Confidence            4456789999999999999999987      22222     556789999 99999999999999999999988776110


Q ss_pred             h-hhhHHHHhccCCCCcHHHHHHHcCCHHHHHHHHhcCCCCCCCCCCCCCCHHHHHHHhcCCHHHH----HHHHhcCCCC
Q 042183          102 E-LESGMIRMMNKEKHTALHEAVFHKIVDVVKILTREDLDYPYSANNYNKTPLCMVAEYEHSSHMV----VAILKNCTSV  176 (179)
Q Consensus       102 ~-~~~~~~~~~~~~g~t~l~~A~~~g~~~~~~~Ll~~~~~~~~~~~~~g~tpl~~A~~~~~~~~~~----~~Ll~~g~~~  176 (179)
                      . ......+..+..|.||||+|+..|+.+++++|++.|++++ ..|..|.||||+|+. .|+.+++    ++|+++|+++
T Consensus       107 ~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~-~~d~~g~t~L~~A~~-~~~~~~~~~i~~~Ll~~g~~~  184 (232)
T 2rfa_A          107 GSVFHYRPHNLIYYGEHPLSFAACVGSEEIVRLLIEHGADIR-AQDSLGNTVLHILIL-QPNKTFACQMYNLLLSYDGGD  184 (232)
T ss_dssp             SGGGSCCTTCSCCCCSSHHHHHHHHTCHHHHHHHHHTTCCTT-CCCTTSCCHHHHHHT-CSCHHHHHHHHHHHHHTTCSC
T ss_pred             CcceeecccccccCCCCHHHHHHHcCCHHHHHHHHHCCCCCC-CCCCCCCCHHHHHHH-cCChHHHHHHHHHHHhcCCch
Confidence            0 0000111223479999999999999999999999999986 899999999999999 9999988    9999999865

>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Homo sapiens} SCOP: d.211.1.1 PDB: 1nfi_E

Probab=99.93  E-value=9.2e-26  Score=160.79  Aligned_cols=135  Identities=19%  Similarity=0.164  Sum_probs=118.6

Q ss_pred             cccCCHHHHHHHHcCChHHHHHHHHHHHHhhCcccccccCCCCCcHHHHHHHHcCCHHHHHHHHHhhcccCCchhhhhhH
Q 042183           27 QLQIDPNLFKAAAAGNLEPFKDMAREEILEICPSLLLQVNAKGDSRSLLVAAKFGHCDIVSVLIERAKLLQHEDEELESG  106 (179)
Q Consensus        27 ~~~~~~~l~~A~~~g~~~~~~~ll~~~~~~~~~~~~~~~~~~g~t~~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~~~~  106 (179)
                      .....+|||.|+..|+.++++.|++..........++..+..|.| |||+|+..|+.+++++|+++|++++.        
T Consensus        75 ~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~g~t-~L~~A~~~~~~~~v~~Ll~~g~~~~~--------  145 (236)
T 1ikn_D           75 DFRGNTPLHLACEQGCLASVGVLTQSCTTPHLHSILKATNYNGHT-CLHLASIHGYLGIVELLVSLGADVNA--------  145 (236)
T ss_dssp             CTTCCCHHHHHHHHTCHHHHHHHHHSTTTTSSSCGGGCCCTTCCC-HHHHHHHTTCHHHHHHHHHHTCCTTC--------
T ss_pred             CCCCCCHHHHHHHcCCHHHHHHHHhcccchhHHHHhhccCCCCCC-HHHHHHHcCCHHHHHHHHHcCCCCCC--------
Confidence            344568999999999999999998721111112346778899999 99999999999999999999998877        


Q ss_pred             HHHhccC-CCCcHHHHHHHcCCHHHHHHHHhcCCCCCCCCCCCCCCHHHHHHHhcCCHHHHHHHHhcCCCC
Q 042183          107 MIRMMNK-EKHTALHEAVFHKIVDVVKILTREDLDYPYSANNYNKTPLCMVAEYEHSSHMVVAILKNCTSV  176 (179)
Q Consensus       107 ~~~~~~~-~g~t~l~~A~~~g~~~~~~~Ll~~~~~~~~~~~~~g~tpl~~A~~~~~~~~~~~~Ll~~g~~~  176 (179)
                          ++. .|+||||+|+..|+.+++++|++.|++++ ..|..|.|||++|+. .|+.+++++|+++|++.
T Consensus       146 ----~~~~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~-~~~~~g~tpl~~A~~-~~~~~~~~~Ll~~ga~~  210 (236)
T 1ikn_D          146 ----QEPCNGRTALHLAVDLQNPDLVSLLLKCGADVN-RVTYQGYSPYQLTWG-RPSTRIQQQLGQLTLEN  210 (236)
T ss_dssp             ----CCTTTCCCHHHHHHHTTCHHHHHHHHTTTCCSC-CCCTTCCCGGGGCTT-SSCHHHHHHHHTTSCGG
T ss_pred             ----CCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCC-cccCCCCCHHHHHHc-cCchHHHHHHHHcchhh
Confidence                887 89999999999999999999999999987 899999999999999 99999999999999864

>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis}

Probab=99.93  E-value=6.7e-25  Score=152.50  Aligned_cols=127  Identities=25%  Similarity=0.247  Sum_probs=116.8

Q ss_pred             cccCCHHHHHHHHcCChHHHHHHHHHHHHhhCcccccccCCCCCcHHHHHHHHcCCHHHHHHHHHhh-cccCCchhhhhh
Q 042183           27 QLQIDPNLFKAAAAGNLEPFKDMAREEILEICPSLLLQVNAKGDSRSLLVAAKFGHCDIVSVLIERA-KLLQHEDEELES  105 (179)
Q Consensus        27 ~~~~~~~l~~A~~~g~~~~~~~ll~~~~~~~~~~~~~~~~~~g~t~~L~~A~~~g~~~~v~~ll~~~-~~~~~~~~~~~~  105 (179)
                      .....+|||.|+..|+.++++.|++     ..+..++..+..|.| |||+|+..|+.+++++|++++ .+.+.       
T Consensus        69 ~~~g~t~l~~A~~~~~~~~~~~Ll~-----~~~~~~~~~~~~g~t-~L~~A~~~~~~~~v~~Ll~~g~~~~~~-------  135 (201)
T 3hra_A           69 NSISDSPYLYAGAQGRTEILAYMLK-----HATPDLNKHNRYGGN-ALIPAAEKGHIDNVKLLLEDGREDIDF-------  135 (201)
T ss_dssp             CTTSCCHHHHHHHTTCHHHHHHHHH-----HSCCCTTCCCTTSCC-SHHHHHHTTCHHHHHHHHHHCCCCTTC-------
T ss_pred             CCCCCCHHHHHHHcCCHHHHHHHHh-----ccCcccccccCCCCc-HHHHHHHcCCHHHHHHHHHcCCCCcCC-------
Confidence            3445689999999999999999985     466778889999999 999999999999999999999 76666       


Q ss_pred             HHHHhccCCCCcHHHHHHHcCC-----HHHHHHHHhcCCCCCCCCCCCCCCHHHHHHHhcCCHHHHHHHHhcC
Q 042183          106 GMIRMMNKEKHTALHEAVFHKI-----VDVVKILTREDLDYPYSANNYNKTPLCMVAEYEHSSHMVVAILKNC  173 (179)
Q Consensus       106 ~~~~~~~~~g~t~l~~A~~~g~-----~~~~~~Ll~~~~~~~~~~~~~g~tpl~~A~~~~~~~~~~~~Ll~~g  173 (179)
                           ++..|+||||+|+..+.     .+++++|++.|++++ ..|..|.|||++|+. .|+.+++++|+++|
T Consensus       136 -----~~~~g~t~L~~A~~~~~~~~~~~~~v~~Ll~~ga~~~-~~~~~g~t~l~~A~~-~~~~~~~~~Ll~~G  201 (201)
T 3hra_A          136 -----QNDFGYTALIEAVGLREGNQLYQDIVKLLMENGADQS-IKDNSGRTAMDYANQ-KGYTEISKILAQYN  201 (201)
T ss_dssp             -----CCTTSCCHHHHHHHSSCCSHHHHHHHHHHHHTTCCTT-CCCTTSCCHHHHHHH-HTCHHHHHHHHTCC
T ss_pred             -----CCCCCCCHHHHHHHhccchhhHHHHHHHHHHCCCCCC-ccCCCCCCHHHHHHH-cCCHhHHHHHHhcC
Confidence                 89999999999999998     999999999999986 899999999999999 99999999999987

>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus}

Probab=99.93  E-value=8.1e-25  Score=163.55  Aligned_cols=140  Identities=16%  Similarity=0.095  Sum_probs=107.0

Q ss_pred             CCHHHHHHHHcCChHHHHHHHHHHHHhhCcccccccCCCCCcHHHHHHHHcCCHHHHHHHHHhhcccCCchh--------
Q 042183           30 IDPNLFKAAAAGNLEPFKDMAREEILEICPSLLLQVNAKGDSRSLLVAAKFGHCDIVSVLIERAKLLQHEDE--------  101 (179)
Q Consensus        30 ~~~~l~~A~~~g~~~~~~~ll~~~~~~~~~~~~~~~~~~g~t~~L~~A~~~g~~~~v~~ll~~~~~~~~~~~--------  101 (179)
                      ..+|||.|+..|+.++++.|++      .+..++..+..|.| |||+|+..|+.+++++|+++|++++....        
T Consensus        91 g~t~L~~A~~~g~~~iv~~Ll~------~g~~~~~~~~~g~t-~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~~~l~~  163 (351)
T 3utm_A           91 GLVPLHNACSYGHYEVTELLLK------HGACVNAMDLWQFT-PLHEAASKNRVEVCSLLLSHGADPTLVNCHGKSAVDM  163 (351)
T ss_dssp             CCCHHHHHHHTTCHHHHHHHHH------TTCCTTCCCTTCCC-HHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHH
T ss_pred             CCcHHHHHHHCCCHHHHHHHHH------CCCCCCCCCCCCCC-HHHHHHHcCCHHHHHHHHHcCCCCccccCCCCcchHH
Confidence            3456666666666666666655      45566777777777 88888888888888888877766543110        


Q ss_pred             ----------------------------------------------------------------h------hhhHHHHhc
Q 042183          102 ----------------------------------------------------------------E------LESGMIRMM  111 (179)
Q Consensus       102 ----------------------------------------------------------------~------~~~~~~~~~  111 (179)
                                                                                      .      ..+..++.+
T Consensus       164 a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~t~L~~A~~~~~~~~~~~~~~Ll~~g~~~~~~  243 (351)
T 3utm_A          164 APTPELRERLTYEFKGHSLLQAAREADLAKVKKTLALEIINFKQPQSHETALHCAVASLHPKRKQVAELLLRKGANVNEK  243 (351)
T ss_dssp             CSSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHTTTCCTTCCCTTTCCCHHHHHHHCCSTTHHHHHHHHHHTTCCTTCC
T ss_pred             HhhhhhHHHHHhhhcccHHHHHHHhccHHHHHHHHHhhcccccCCCCCCCHHHHHHHHhCccHHHHHHHHHHcCCCcCCc
Confidence                                                                            0      111123457


Q ss_pred             cCCCCcHHHHHHHcCCHHHHHHHHhcCCCCCCCCCCCCCCHHHHHHHhcCCHHHHHHHHhcCCCCCC
Q 042183          112 NKEKHTALHEAVFHKIVDVVKILTREDLDYPYSANNYNKTPLCMVAEYEHSSHMVVAILKNCTSVSH  178 (179)
Q Consensus       112 ~~~g~t~l~~A~~~g~~~~~~~Ll~~~~~~~~~~~~~g~tpl~~A~~~~~~~~~~~~Ll~~g~~~~~  178 (179)
                      +..|+||||+|+..|+.+++++|++.|++++ ..|..|.||||+|+. .|+.+++++|+++|++++.
T Consensus       244 ~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~n-~~d~~g~t~L~~A~~-~~~~~~v~~Ll~~gad~~~  308 (351)
T 3utm_A          244 NKDFMTPLHVAAERAHNDVMEVLHKHGAKMN-ALDSLGQTALHRAAL-AGHLQTCRLLLSYGSDPSI  308 (351)
T ss_dssp             CTTCCCHHHHHHHTTCHHHHHHHHHTTCCTT-CCCTTSCCHHHHHHH-HTCHHHHHHHHHTTCCTTC
T ss_pred             CCCCCCHHHHHHHcCCHHHHHHHHHCCCCCC-CcCCCCCCHHHHHHH-cCcHHHHHHHHHcCCCCCC
Confidence            7889999999999999999999999999986 889999999999999 9999999999999998864

>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A*

Probab=99.93  E-value=1e-24  Score=155.20  Aligned_cols=140  Identities=20%  Similarity=0.177  Sum_probs=93.3

Q ss_pred             CCHHHHHHHHcCChHHHHHHHHHHHHhhCcccccccCCCCCcHHHHHHHHcCCHHHHHHHHHhhcccCCchhh-------
Q 042183           30 IDPNLFKAAAAGNLEPFKDMAREEILEICPSLLLQVNAKGDSRSLLVAAKFGHCDIVSVLIERAKLLQHEDEE-------  102 (179)
Q Consensus        30 ~~~~l~~A~~~g~~~~~~~ll~~~~~~~~~~~~~~~~~~g~t~~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~-------  102 (179)
                      ..++||.|+..|+.++++.|++      .+..++..+..|.| |||+|+..|+.+++++|+++|...+.....       
T Consensus        11 g~t~L~~A~~~g~~~~v~~Ll~------~g~~~~~~~~~g~t-~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~   83 (237)
T 3b7b_A           11 KRSPLHAAAEAGHVDICHMLVQ------AGANIDTCSEDQRT-PLMEAAENNHLEAVKYLIKAGALVDPKDAEGSTCLHL   83 (237)
T ss_dssp             SCCHHHHHHHHTCHHHHHHHHH------TTCCTTCCCTTCCC-HHHHHHHTTCHHHHHHHHTTTCCCCCCCTTSCCHHHH
T ss_pred             CCCHHHHHHHcCcHHHHHHHHH------cCCCcCccCCCCCC-HHHHHHHhCCHHHHHHHHhCCCCCCCCCCCCCcHHHH
Confidence            4466777777777777666665      44455666666666 666666666666666666666555441111       


Q ss_pred             --------------hhh-HHHHhccCCCCcHHHHHHHcCCHHHHHHHHhcCCCCCCCCCCCCCCHHHHHHHhcCCHHHHH
Q 042183          103 --------------LES-GMIRMMNKEKHTALHEAVFHKIVDVVKILTREDLDYPYSANNYNKTPLCMVAEYEHSSHMVV  167 (179)
Q Consensus       103 --------------~~~-~~~~~~~~~g~t~l~~A~~~g~~~~~~~Ll~~~~~~~~~~~~~g~tpl~~A~~~~~~~~~~~  167 (179)
                                    ... ..++..+..|+||||+|+..|+.+++++|++.|++++ ..+..|.||||+|+. .|+.++++
T Consensus        84 A~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~-~~~~~g~t~L~~A~~-~~~~~~~~  161 (237)
T 3b7b_A           84 AAKKGHYEVVQYLLSNGQMDVNCQDDGGWTPMIWATEYKHVDLVKLLLSKGSDIN-IRDNEENICLHWAAF-SGCVDIAE  161 (237)
T ss_dssp             HHHTTCHHHHHHHHTTTCCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTT-CCCTTSCCHHHHHHH-HCCHHHHH
T ss_pred             HHHcCCHHHHHHHHhCCCCCcccCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCC-ccCCCCCCHHHHHHH-CCCHHHHH
Confidence                          000 1223356677888888888888888888888877765 677778888888888 88888888


Q ss_pred             HHHhcCCCCCC
Q 042183          168 AILKNCTSVSH  178 (179)
Q Consensus       168 ~Ll~~g~~~~~  178 (179)
                      +|+++|++++.
T Consensus       162 ~Ll~~g~~~~~  172 (237)
T 3b7b_A          162 ILLAAKCDLHA  172 (237)
T ss_dssp             HHHTTTCCTTC
T ss_pred             HHHHcCCCCCC
Confidence            88888877653

>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A 4dx1_A 4dx2_A*

Probab=99.93  E-value=1e-25  Score=162.61  Aligned_cols=127  Identities=18%  Similarity=0.088  Sum_probs=115.6

Q ss_pred             cCCHHHHHHHHcCChHHHHHHHHHHHHhhCcccccccC--------------CCCCcHHHHHHHHcCCHHHHHHHHH---
Q 042183           29 QIDPNLFKAAAAGNLEPFKDMAREEILEICPSLLLQVN--------------AKGDSRSLLVAAKFGHCDIVSVLIE---   91 (179)
Q Consensus        29 ~~~~~l~~A~~~g~~~~~~~ll~~~~~~~~~~~~~~~~--------------~~g~t~~L~~A~~~g~~~~v~~ll~---   91 (179)
                      ...++||.|+..|+.++++.|++      .+..++..+              ..|.| |||+|+..|+.+++++|++   
T Consensus        92 ~g~t~L~~A~~~g~~~~v~~Ll~------~ga~~~~~~~~~~~~~~~~~~~~~~g~t-pL~~A~~~g~~~~v~~Ll~~~~  164 (260)
T 3jxi_A           92 RGQTALHIAIERRCKHYVELLVE------KGADVHAQARGRFFQPKDEGGYFYFGEL-PLSLAACTNQPHIVHYLTENGH  164 (260)
T ss_dssp             ESBCHHHHHHHTTCHHHHHHHHH------TTCCTTCCCEECCCSSSCCCCSCCSCSS-HHHHHHHTTCHHHHHHHHHCSS
T ss_pred             CCCCHHHHHHHcCCHHHHHHHHh------CCCCcCccccccccCcccccccccCCCC-HHHHHHHcCCHHHHHHHHhccc
Confidence            45689999999999999999998      667777777              68999 9999999999999999999   


Q ss_pred             hhcccCCchhhhhhHHHHhccCCCCcHHHHHHHcCC---------HHHHHHHHhcCCCCC------CCCCCCCCCHHHHH
Q 042183           92 RAKLLQHEDEELESGMIRMMNKEKHTALHEAVFHKI---------VDVVKILTREDLDYP------YSANNYNKTPLCMV  156 (179)
Q Consensus        92 ~~~~~~~~~~~~~~~~~~~~~~~g~t~l~~A~~~g~---------~~~~~~Ll~~~~~~~------~~~~~~g~tpl~~A  156 (179)
                      +|++++.            +|..|+||||+|+..++         .+++++|++.|+++.      +..|..|.||||+|
T Consensus       165 ~ga~~~~------------~d~~g~TpLh~A~~~~~~~~~~~~~~~~~v~~Ll~~ga~~~~~~~~~~~~d~~g~tpL~~A  232 (260)
T 3jxi_A          165 KQADLRR------------QDSRGNTVLHALVAIADNTRENTKFVTKMYDLLLIKCAKLFPDTNLEALLNNDGLSPLMMA  232 (260)
T ss_dssp             CCCCTTC------------CCTTSCCHHHHHHHHCCSSHHHHHHHHHHHHHHHHHHHHHCTTCCGGGCCCTTSCCHHHHH
T ss_pred             cCCCCcc------------cCCCCCcHHHHHHHhccCchhHHHHHHHHHHHHHHhCcccccccchhhcccCCCCCHHHHH
Confidence            8888877            99999999999999888         799999999998863      36899999999999


Q ss_pred             HHhcCCHHHHHHHHhcCCC
Q 042183          157 AEYEHSSHMVVAILKNCTS  175 (179)
Q Consensus       157 ~~~~~~~~~~~~Ll~~g~~  175 (179)
                      +. .|+.+++++|+++|++
T Consensus       233 ~~-~g~~~~v~~Ll~~g~~  250 (260)
T 3jxi_A          233 AK-TGKIGIFQHIIRREIA  250 (260)
T ss_dssp             HH-TTCHHHHHHHHHHHHH
T ss_pred             HH-cCCHHHHHHHHHhCCC
Confidence            99 9999999999999854

>4hbd_A KN motif and ankyrin repeat domain-containing Pro; structural genomics consortium, SGC, protein binding; 1.72A {Homo sapiens}

Probab=99.93  E-value=3.6e-25  Score=161.56  Aligned_cols=126  Identities=16%  Similarity=0.206  Sum_probs=79.3

Q ss_pred             cccCCHHHHHHHHcCChHHHHHHHHHHHHhhCcc-cccccC--------------------------------------C
Q 042183           27 QLQIDPNLFKAAAAGNLEPFKDMAREEILEICPS-LLLQVN--------------------------------------A   67 (179)
Q Consensus        27 ~~~~~~~l~~A~~~g~~~~~~~ll~~~~~~~~~~-~~~~~~--------------------------------------~   67 (179)
                      .....+|||.|+..|+.++++.|++      .+. .++..+                                      .
T Consensus       108 d~~g~T~Lh~A~~~g~~~~v~~Ll~------~g~~~~~~~~~~g~tpL~~a~~~~~~~~~~~~~v~~Ll~~g~~~~~~~~  181 (276)
T 4hbd_A          108 DSNGNTALHYSVSHANFPVVQQLLD------SGVCKVDKQNRAGYSPIMLTALATLKTQDDIETVLQLFRLGNINAKASQ  181 (276)
T ss_dssp             CTTSCCHHHHHHHTTCHHHHHHHHH------TSCCCTTCCCTTSCCHHHHGGGCCCCSHHHHHHHHHHHHHSCTTCCCTT
T ss_pred             CCCCCCHHHHHHHCCCHHHHHHHHH------CCCCcCCCCCCCCCCHHHHHHHHHhhhhhhHHHHHHHHHcCCCccccCC
Confidence            4456789999999999999999987      222 334444                                      4


Q ss_pred             CCCcHHHHHHHHcCCHHHHHHHHHhhcccCCchhhhhhHHHHhccCCCCcHHHHHHHcCCHHHHHHHHh-cCCCCCCCCC
Q 042183           68 KGDSRSLLVAAKFGHCDIVSVLIERAKLLQHEDEELESGMIRMMNKEKHTALHEAVFHKIVDVVKILTR-EDLDYPYSAN  146 (179)
Q Consensus        68 ~g~t~~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~~~~~~~~~~~~g~t~l~~A~~~g~~~~~~~Ll~-~~~~~~~~~~  146 (179)
                      .|.| |||+|+..|+.+++++|+++|++++.            +|..|+||||+|+..|+.+++++|++ .|++++ ..|
T Consensus       182 ~g~t-pLh~A~~~g~~~~v~~Ll~~gad~n~------------~d~~G~TpLh~A~~~g~~~iv~~Ll~~~gad~~-~~d  247 (276)
T 4hbd_A          182 AGQT-ALMLAVSHGRVDVVKALLACEADVNV------------QDDDGSTALMCACEHGHKEIAGLLLAVPSCDIS-LTD  247 (276)
T ss_dssp             TCCC-HHHHHHHTTCHHHHHHHHHTTCCTTC------------CCTTSCCHHHHHHHHTCHHHHHHHHTSTTCCTT-CCC
T ss_pred             CCCC-HHHHHHHcCCHHHHHHHHhCCCCCCC------------CCCCCCCHHHHHHHCCCHHHHHHHHhcCCCCCc-CcC
Confidence            4555 56666666666666666666555554            55566666666666666666666665 455544 555


Q ss_pred             CCCCCHHHHHHHhcCCHHHHHHHHhcC
Q 042183          147 NYNKTPLCMVAEYEHSSHMVVAILKNC  173 (179)
Q Consensus       147 ~~g~tpl~~A~~~~~~~~~~~~Ll~~g  173 (179)
                      ..|.|||++|+. .|+.+++++|++++
T Consensus       248 ~~g~TpL~~A~~-~g~~~iv~~Ll~~~  273 (276)
T 4hbd_A          248 RDGSTALMVALD-AGQSEIASMLYSRM  273 (276)
T ss_dssp             TTSCCHHHHHHH-HTCHHHHHHHHHHC
T ss_pred             CCCCCHHHHHHH-cCCHHHHHHHHhcc
Confidence            666666666666 66666666665543

>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A

Probab=99.93  E-value=1.9e-25  Score=160.96  Aligned_cols=128  Identities=22%  Similarity=0.173  Sum_probs=116.1

Q ss_pred             ccCCHHHHHHHHcCChHHHHHHHHHHHHhhCcccccccCCC-------------CCcHHHHHHHHcCCHHHHHHHHH---
Q 042183           28 LQIDPNLFKAAAAGNLEPFKDMAREEILEICPSLLLQVNAK-------------GDSRSLLVAAKFGHCDIVSVLIE---   91 (179)
Q Consensus        28 ~~~~~~l~~A~~~g~~~~~~~ll~~~~~~~~~~~~~~~~~~-------------g~t~~L~~A~~~g~~~~v~~ll~---   91 (179)
                      ....+|||.|+..|+.++++.|++      .+..++..+..             |.| |||+|+..|+.+++++|++   
T Consensus        88 ~~g~t~L~~A~~~g~~~~v~~Ll~------~ga~~~~~~~~~~~~~~~~~~~~~g~t-pL~~A~~~~~~~~v~~Ll~~~~  160 (256)
T 2etb_A           88 YQGHSALHIAIEKRSLQCVKLLVE------NGADVHLRACGRFFQKHQGTCFYFGEL-PLSLAACTKQWDVVTYLLENPH  160 (256)
T ss_dssp             TTTCCHHHHHHHTTCHHHHHHHHH------TTCCTTCCCCSGGGSCCSSSCCCSCSS-HHHHHHHTTCHHHHHHHHHCSS
T ss_pred             ccCCCHHHHHHHcCCHHHHHHHHH------cCCCCCcccccccccccccccccCCCC-HHHHHHHcCCHHHHHHHHhccc
Confidence            346799999999999999999998      56677777775             999 9999999999999999999   


Q ss_pred             hhcccCCchhhhhhHHHHhccCCCCcHHHHHHH--cCCHH-------HHHHHHhcCCCCC------CCCCCCCCCHHHHH
Q 042183           92 RAKLLQHEDEELESGMIRMMNKEKHTALHEAVF--HKIVD-------VVKILTREDLDYP------YSANNYNKTPLCMV  156 (179)
Q Consensus        92 ~~~~~~~~~~~~~~~~~~~~~~~g~t~l~~A~~--~g~~~-------~~~~Ll~~~~~~~------~~~~~~g~tpl~~A  156 (179)
                      +|++++.            +|..|+||||+|+.  .++.+       ++++|++.|+++.      +.+|..|.||||+|
T Consensus       161 ~ga~~n~------------~d~~g~TpLh~A~~~~~~~~~~~~~~~~iv~~Ll~~ga~~~~~~~~~~~~d~~g~tpL~~A  228 (256)
T 2etb_A          161 QPASLEA------------TDSLGNTVLHALVMIADNSPENSALVIHMYDGLLQMGARLCPTVQLEEISNHQGLTPLKLA  228 (256)
T ss_dssp             CCCCTTC------------CCTTSCCHHHHHHHHCCSCHHHHHHHHHHHHHHHHHHHHHSTTCCGGGCCCTTSCCHHHHH
T ss_pred             cCCCcCc------------cCCCCCCHHHHHHHcccCCchhhHHHHHHHHHHHHcCCCcccccccccccCCCCCCHHHHH
Confidence            8998877            99999999999999  88888       9999999999872      38899999999999


Q ss_pred             HHhcCCHHHHHHHHhcCCC
Q 042183          157 AEYEHSSHMVVAILKNCTS  175 (179)
Q Consensus       157 ~~~~~~~~~~~~Ll~~g~~  175 (179)
                      +. .|+.+++++|+++|++
T Consensus       229 ~~-~g~~~~v~~Ll~~g~~  246 (256)
T 2etb_A          229 AK-EGKIEIFRHILQREFS  246 (256)
T ss_dssp             HH-TTCHHHHHHHHHHHHH
T ss_pred             HH-hCCHHHHHHHHhCCCC
Confidence            99 9999999999999854

>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus}

Probab=99.93  E-value=5e-25  Score=164.67  Aligned_cols=131  Identities=18%  Similarity=0.197  Sum_probs=120.6

Q ss_pred             ccCCHHHHHHHHcCChHHHHHHHHHHHHhhCcccccccCCCCCcHHHHHHHHcCCHHHHHHHHHhhcccCCchhhhhhHH
Q 042183           28 LQIDPNLFKAAAAGNLEPFKDMAREEILEICPSLLLQVNAKGDSRSLLVAAKFGHCDIVSVLIERAKLLQHEDEELESGM  107 (179)
Q Consensus        28 ~~~~~~l~~A~~~g~~~~~~~ll~~~~~~~~~~~~~~~~~~g~t~~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~~~~~  107 (179)
                      ....++|+.|+..|+.+.++.++.     ..+..++..|..|.| |||+|+..|+.+++++|+++|++++.         
T Consensus        22 ~~~~~~L~~A~~~g~~~~v~~ll~-----~~~~~~~~~d~~g~t-~L~~A~~~g~~~~v~~Ll~~g~~~~~---------   86 (351)
T 3utm_A           22 EYKKDELLEAARSGNEEKLMALLT-----PLNVNCHASDGRKST-PLHLAAGYNRVRIVQLLLQHGADVHA---------   86 (351)
T ss_dssp             HHHHHHHHHHHHHTCHHHHHHHCC-----TTTTTCCCSSTTCCC-HHHHHHHTTCHHHHHHHHHTTCCTTC---------
T ss_pred             cccchhHHHHHHcCCHHHHHHHHH-----hcCCCcccCCCCCCC-HHHHHHHcCCHHHHHHHHHcCCCCCc---------
Confidence            334578999999999999988875     457778889999999 99999999999999999999998877         


Q ss_pred             HHhccCCCCcHHHHHHHcCCHHHHHHHHhcCCCCCCCCCCCCCCHHHHHHHhcCCHHHHHHHHhcCCCCCC
Q 042183          108 IRMMNKEKHTALHEAVFHKIVDVVKILTREDLDYPYSANNYNKTPLCMVAEYEHSSHMVVAILKNCTSVSH  178 (179)
Q Consensus       108 ~~~~~~~g~t~l~~A~~~g~~~~~~~Ll~~~~~~~~~~~~~g~tpl~~A~~~~~~~~~~~~Ll~~g~~~~~  178 (179)
                         ++..|+||||+|+..|+.+++++|++.|++++ ..+..|.||||+|+. .|+.+++++|+++|++++.
T Consensus        87 ---~~~~g~t~L~~A~~~g~~~iv~~Ll~~g~~~~-~~~~~g~t~L~~A~~-~~~~~~v~~Ll~~g~~~~~  152 (351)
T 3utm_A           87 ---KDKGGLVPLHNACSYGHYEVTELLLKHGACVN-AMDLWQFTPLHEAAS-KNRVEVCSLLLSHGADPTL  152 (351)
T ss_dssp             ---CCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTT-CCCTTCCCHHHHHHH-TTCHHHHHHHHHTTCCTTC
T ss_pred             ---cCCCCCcHHHHHHHCCCHHHHHHHHHCCCCCC-CCCCCCCCHHHHHHH-cCCHHHHHHHHHcCCCCcc
Confidence               89999999999999999999999999999986 889999999999999 9999999999999998764

>3aaa_C Myotrophin, protein V-1; actin capping protein, barbed END capping, inhibition, prote binding, actin capping, actin-binding, cytoskeleton, ANK RE; 2.20A {Homo sapiens} PDB: 1myo_A 2kxp_C 2myo_A

Probab=99.93  E-value=1.1e-25  Score=145.19  Aligned_cols=115  Identities=21%  Similarity=0.227  Sum_probs=104.5

Q ss_pred             CCHHHHHHHHcCChHHHHHHHHHHHHhhCcccccccCCCCCcHHHHHHHHcCCHHHHHHHHHhhcccCCchhhhhhHHHH
Q 042183           30 IDPNLFKAAAAGNLEPFKDMAREEILEICPSLLLQVNAKGDSRSLLVAAKFGHCDIVSVLIERAKLLQHEDEELESGMIR  109 (179)
Q Consensus        30 ~~~~l~~A~~~g~~~~~~~ll~~~~~~~~~~~~~~~~~~g~t~~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~~~~~~~  109 (179)
                      .+++||.|+..|+.+.++.|++      .+..++.+|..|.| |||+|+..|+.+++++|+++|++++.           
T Consensus         7 ~~~~l~~A~~~~~~~~v~~ll~------~~~~~~~~~~~g~t-~L~~A~~~~~~~~v~~Ll~~g~~~~~-----------   68 (123)
T 3aaa_C            7 CDKEFMWALKNGDLDEVKDYVA------KGEDVNRTLEGGRK-PLHYAADCGQLEILEFLLLKGADINA-----------   68 (123)
T ss_dssp             CHHHHHHHHHTTCHHHHHHHHH------TTCCTTSCCTTSSC-HHHHHHHTTCHHHHHHHHTTTCCTTC-----------
T ss_pred             cchHHHHHHHcCCHHHHHHHHH------cCCCcCccCCCCCc-HHHHHHHcCCHHHHHHHHHcCCCCCc-----------
Confidence            4589999999999999999987      56678889999999 99999999999999999999998877           


Q ss_pred             hccCCCCcHHHHHHHcCCHHHHHHHHhcCCCCCCCCCCCCCCHHHHHHHhcCCHHH
Q 042183          110 MMNKEKHTALHEAVFHKIVDVVKILTREDLDYPYSANNYNKTPLCMVAEYEHSSHM  165 (179)
Q Consensus       110 ~~~~~g~t~l~~A~~~g~~~~~~~Ll~~~~~~~~~~~~~g~tpl~~A~~~~~~~~~  165 (179)
                       +|..|+||||+|+..|+.+++++|++.|+++. .+|..|.||+++|.. .+..++
T Consensus        69 -~d~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~-~~~~~g~t~l~~A~~-~~~~~l  121 (123)
T 3aaa_C           69 -PDKHHITPLLSAVYEGHVSCVKLLLSKGADKT-VKGPDGLTAFEATDN-QAIKAL  121 (123)
T ss_dssp             -CCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTT-CCCTTSCCHHHHCCC-HHHHHH
T ss_pred             -CCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCC-CcCCCCCCHHHHhCC-HHHHHH
Confidence             99999999999999999999999999999976 899999999999976 444433

>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens}

Probab=99.93  E-value=1.4e-24  Score=159.11  Aligned_cols=141  Identities=17%  Similarity=0.159  Sum_probs=96.3

Q ss_pred             ccCCHHHHHHHHcCChHHHHHHHHHHHHhhCcccccccCCCCCcHHHHHHHHcCCHHHHHHHHHhhcccCCchhh-----
Q 042183           28 LQIDPNLFKAAAAGNLEPFKDMAREEILEICPSLLLQVNAKGDSRSLLVAAKFGHCDIVSVLIERAKLLQHEDEE-----  102 (179)
Q Consensus        28 ~~~~~~l~~A~~~g~~~~~~~ll~~~~~~~~~~~~~~~~~~g~t~~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~-----  102 (179)
                      ....++||.|+..|+.++++.|++      .+..++.+|..|.| |||+|+..|+.+++++|+++|++++.....     
T Consensus        57 ~~g~t~L~~Aa~~g~~~~v~~Ll~------~g~~~~~~~~~g~t-~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~g~t~L  129 (285)
T 3d9h_A           57 VSDWSPMHEAAIHGHQLSLRNLIS------QGWAVNIITADHVS-PLHEACLGGHLSCVKILLKHGAQVNGVTADWHTPL  129 (285)
T ss_dssp             CCSCCHHHHHHHTTCHHHHHHHHH------TTCCSCEECTTCCC-HHHHHHHTTCHHHHHHHHHTTCCSSCCCTTCCCHH
T ss_pred             ccCCCHHHHHHHcCCHHHHHHHHH------CCCCCCCcCCCCCC-HHHHHHHCCcHHHHHHHHHCCCCCCCCCCCCCCHH
Confidence            335689999999999999999987      56678889999999 999999999999999999998887762111     


Q ss_pred             ----------hhhHHHH-----hccCCCCcHHHHHHHcCCHHHHHHHHhcCCCCCCCCCCCCCCHHHHHHHhcCCHHHHH
Q 042183          103 ----------LESGMIR-----MMNKEKHTALHEAVFHKIVDVVKILTREDLDYPYSANNYNKTPLCMVAEYEHSSHMVV  167 (179)
Q Consensus       103 ----------~~~~~~~-----~~~~~g~t~l~~A~~~g~~~~~~~Ll~~~~~~~~~~~~~g~tpl~~A~~~~~~~~~~~  167 (179)
                                .....+.     ..+..|.||||+|+..|+.+++++|++.|++++ ..|..|.||||+|+. .|+.++++
T Consensus       130 ~~A~~~~~~~~v~~Ll~~g~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~-~~d~~g~t~L~~A~~-~~~~~~v~  207 (285)
T 3d9h_A          130 FNACVSGSWDCVNLLLQHGASVQPESDLASPIHEAARRGHVECVNSLIAYGGNID-HKISHLGTPLYLACE-NQQRACVK  207 (285)
T ss_dssp             HHHHHHTCHHHHHHHHHTTCCSSCSCTTSCHHHHHHHHTCHHHHHHHHHTTCCTT-CCBTTTBCHHHHHHH-TTCHHHHH
T ss_pred             HHHHHcCHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCC-CcCCCCCCHHHHHHH-cCcHHHHH
Confidence                      0000000     012335666666666666666666666666654 556666666666666 66666666


Q ss_pred             HHHhcCCCCC
Q 042183          168 AILKNCTSVS  177 (179)
Q Consensus       168 ~Ll~~g~~~~  177 (179)
                      +|+++|++++
T Consensus       208 ~Ll~~ga~~~  217 (285)
T 3d9h_A          208 KLLESGADVN  217 (285)
T ss_dssp             HHHHTTCCTT
T ss_pred             HHHHCCCCCC
Confidence            6666665543

>1n0q_A 3ANK, 3 ankyrin repeats; structural protein; 1.26A {} SCOP: k.37.1.1

Probab=99.93  E-value=5.8e-25  Score=135.15  Aligned_cols=93  Identities=27%  Similarity=0.391  Sum_probs=87.5

Q ss_pred             CCCcHHHHHHHHcCCHHHHHHHHHhhcccCCchhhhhhHHHHhccCCCCcHHHHHHHcCCHHHHHHHHhcCCCCCCCCCC
Q 042183           68 KGDSRSLLVAAKFGHCDIVSVLIERAKLLQHEDEELESGMIRMMNKEKHTALHEAVFHKIVDVVKILTREDLDYPYSANN  147 (179)
Q Consensus        68 ~g~t~~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~~~~~~~~~~~~g~t~l~~A~~~g~~~~~~~Ll~~~~~~~~~~~~  147 (179)
                      +|.| |||+|+..|+.+++++|++.|++++.            ++..|+||||+|+..|+.+++++|++.|++++ .+|.
T Consensus         1 ~g~t-~L~~A~~~~~~~~v~~Ll~~g~~~n~------------~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~-~~d~   66 (93)
T 1n0q_A            1 NGRT-PLHLAARNGHLEVVKLLLEAGADVNA------------KDKNGRTPLHLAARNGHLEVVKLLLEAGADVN-AKDK   66 (93)
T ss_dssp             --CC-HHHHHHHHTCHHHHHHHHHTTCCTTC------------CCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTT-CCCT
T ss_pred             CCCc-HHHHHHHcCCHHHHHHHHHcCCCCcc------------cCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCC-ccCC
Confidence            4789 99999999999999999999998887            99999999999999999999999999999986 8999


Q ss_pred             CCCCHHHHHHHhcCCHHHHHHHHhcCCC
Q 042183          148 YNKTPLCMVAEYEHSSHMVVAILKNCTS  175 (179)
Q Consensus       148 ~g~tpl~~A~~~~~~~~~~~~Ll~~g~~  175 (179)
                      .|.||||+|+. .|+.+++++|+++|++
T Consensus        67 ~g~t~l~~A~~-~~~~~~~~~Ll~~ga~   93 (93)
T 1n0q_A           67 NGRTPLHLAAR-NGHLEVVKLLLEAGAY   93 (93)
T ss_dssp             TSCCHHHHHHH-TTCHHHHHHHHHTTCC
T ss_pred             CCCCHHHHHHH-cCCHHHHHHHHHcCCC
Confidence            99999999999 9999999999999975

>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A

Probab=99.93  E-value=5.5e-26  Score=160.69  Aligned_cols=127  Identities=24%  Similarity=0.260  Sum_probs=110.5

Q ss_pred             CCHHHHHHHHcCChHHHHHHHHHHHHhhCcccccccCCCCCcHHHHHHHHcCCHHHHHHHHHh-hcccCCchhhhhhHHH
Q 042183           30 IDPNLFKAAAAGNLEPFKDMAREEILEICPSLLLQVNAKGDSRSLLVAAKFGHCDIVSVLIER-AKLLQHEDEELESGMI  108 (179)
Q Consensus        30 ~~~~l~~A~~~g~~~~~~~ll~~~~~~~~~~~~~~~~~~g~t~~L~~A~~~g~~~~v~~ll~~-~~~~~~~~~~~~~~~~  108 (179)
                      ..++||.|+..|+.++++.|++      .+..++.+|..|.| |||+|+..|+.+++++|++. +++.+.          
T Consensus        73 g~t~L~~A~~~g~~~~v~~Ll~------~g~~~~~~~~~g~t-~L~~A~~~~~~~~v~~Ll~~~g~~~~~----------  135 (222)
T 3ehr_A           73 IDNPLHEAAKRGNLSWLRECLD------NRVGVNGLDKAGST-ALYWACHGGHKDIVEMLFTQPNIELNQ----------  135 (222)
T ss_dssp             ESCHHHHHHHHTCHHHHHHHHH------TTCCTTCCCTTSCC-HHHHHHHTTCHHHHHHHTTSTTCCCCC----------
T ss_pred             cccccccccccCcHHHHHHHHh------CCCCccccCCCCCC-HHHHHHHcCCHHHHHHHHcCCCCCccc----------
Confidence            3579999999999999999987      66778889999999 99999999999999999998 888877          


Q ss_pred             HhccCCCCcHHHHHHHcCCHHHHHHHHhcCCCCCCCCCCCCCCHHHHHHHhcCCHHHHHHHHhcCCCCC
Q 042183          109 RMMNKEKHTALHEAVFHKIVDVVKILTREDLDYPYSANNYNKTPLCMVAEYEHSSHMVVAILKNCTSVS  177 (179)
Q Consensus       109 ~~~~~~g~t~l~~A~~~g~~~~~~~Ll~~~~~~~~~~~~~g~tpl~~A~~~~~~~~~~~~Ll~~g~~~~  177 (179)
                        ++..|+||||+|+..|+.+++++|++.|++++ .+|..|.|||++|+. .++.++++.|++.|+...
T Consensus       136 --~d~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~-~~~~~g~t~l~~A~~-~~~~~~l~~l~~~~~~~~  200 (222)
T 3ehr_A          136 --QNKLGDTALHAAAWKGYADIVQLLLAKGARTD-LRNIEKKLAFDMATN-AACASLLKKKQGTDAVRT  200 (222)
T ss_dssp             --CCTTSCCHHHHHHHHTCHHHHHHHHHHTCCSC-CCCTTSCCHHHHCCS-HHHHHHHC----------
T ss_pred             --cCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCc-cccCCCCCHHHHhcc-hhHHHHHHHHhccchhhh
Confidence              99999999999999999999999999999986 899999999999999 999999999999987653

>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A

Probab=99.93  E-value=1.6e-24  Score=153.24  Aligned_cols=130  Identities=18%  Similarity=0.156  Sum_probs=110.5

Q ss_pred             ccCCHHHHHHHHcCChHHHHHHHHHHHHhhCc--ccccc-cCCCCCcHHHHHHHHcCCHHHHHHHHHhh--cccCCchhh
Q 042183           28 LQIDPNLFKAAAAGNLEPFKDMAREEILEICP--SLLLQ-VNAKGDSRSLLVAAKFGHCDIVSVLIERA--KLLQHEDEE  102 (179)
Q Consensus        28 ~~~~~~l~~A~~~g~~~~~~~ll~~~~~~~~~--~~~~~-~~~~g~t~~L~~A~~~g~~~~v~~ll~~~--~~~~~~~~~  102 (179)
                      ....++||.|+..|+.++++.|++      .+  ..++. .+..|.| |||+|+..|+.+++++|++++  .+.+.    
T Consensus        34 ~~g~t~L~~A~~~~~~~~v~~Ll~------~~~~~~~~~~~~~~g~t-~L~~A~~~~~~~~~~~Ll~~g~~~~~~~----  102 (228)
T 2dzn_A           34 QDGRIPLHWSVSFQAHEITSFLLS------KMENVNLDDYPDDSGWT-PFHIACSVGNLEVVKSLYDRPLKPDLNK----  102 (228)
T ss_dssp             TTSCCHHHHHHHTTCHHHHHHHHH------TCTTCCGGGCCCTTSCC-HHHHHHHHCCHHHHHHHHSSSSCCCTTC----
T ss_pred             CCCCCHHHHHHHcCCHHHHHHHHh------ccccccccccCCCCCCC-HHHHHHHcCCHHHHHHHHhCCCCccccc----
Confidence            345678888888888888888877      33  33444 7788888 999999888889999988887  55554    


Q ss_pred             hhhHHHHhccCCCCcHHHHHHHcCCHHHHHHHHhcCCCCCCCCCCCCCCHHHHHHHhcCCHHHHHHHHhcC-CCCCC
Q 042183          103 LESGMIRMMNKEKHTALHEAVFHKIVDVVKILTREDLDYPYSANNYNKTPLCMVAEYEHSSHMVVAILKNC-TSVSH  178 (179)
Q Consensus       103 ~~~~~~~~~~~~g~t~l~~A~~~g~~~~~~~Ll~~~~~~~~~~~~~g~tpl~~A~~~~~~~~~~~~Ll~~g-~~~~~  178 (179)
                              ++..|.||||+|+..|+.+++++|++.|++++ ..+..|.||||+|+. .|+.+++++|+++| ++++.
T Consensus       103 --------~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~-~~~~~g~t~L~~A~~-~~~~~~v~~Ll~~g~~~~~~  169 (228)
T 2dzn_A          103 --------ITNQGVTCLHLAVGKKWFEVSQFLIENGASVR-IKDKFNQIPLHRAAS-VGSLKLIELLCGLGKSAVNW  169 (228)
T ss_dssp             --------CCTTCCCHHHHHHHTTCHHHHHHHHHTTCCSC-CCCTTSCCHHHHHHH-TTCHHHHHHHHTTTCCCSCC
T ss_pred             --------CCcCCCCHHHHHHHcCCHhHHHHHHHcCCCcc-ccCCCCCCHHHHHHH-cCCHHHHHHHHhcCcccccC
Confidence                    78899999999999999999999999999976 889999999999999 99999999999999 77764

>1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene family, nuclear protein, phosphorylation, disease mutation, polymorphism; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.211.1.1 PDB: 4a63_B

Probab=99.93  E-value=1.2e-25  Score=160.84  Aligned_cols=128  Identities=20%  Similarity=0.107  Sum_probs=90.8

Q ss_pred             cCCHHHHHHHHcCChHHHHHHHHHHHHhhCcccccccCCCCCcHHHHHHHHcCCHHHHHHHHHhhcccCCchhhhhhHHH
Q 042183           29 QIDPNLFKAAAAGNLEPFKDMAREEILEICPSLLLQVNAKGDSRSLLVAAKFGHCDIVSVLIERAKLLQHEDEELESGMI  108 (179)
Q Consensus        29 ~~~~~l~~A~~~g~~~~~~~ll~~~~~~~~~~~~~~~~~~g~t~~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~~~~~~  108 (179)
                      ...++||.|+..|+.+.++.|++      .+..++. +..|.| |||+|+..|+.+++++|++.+++++.          
T Consensus         4 ~g~t~L~~a~~~~~~~~~~~ll~------~g~~~~~-~~~~~t-~L~~A~~~g~~~~v~~Ll~~g~~~~~----------   65 (239)
T 1ycs_B            4 TGQVSLPPGKRTNLRKTGSERIA------HGMRVKF-NPLPLA-LLLDSSLEGEFDLVQRIIYEVDDPSL----------   65 (239)
T ss_dssp             ----------------------------------------CHH-HHHHHHHHTCHHHHHHHTSTTSSCCC----------
T ss_pred             cccccCchhhhhhhHHHHHHHhc------cCCCccc-CchhhH-HHHHHHHcCCHHHHHHHHHcCCCCCC----------
Confidence            35689999999999999999988      4445553 467889 99999999999999999999998887          


Q ss_pred             HhccCCCCcHHHHHHHcCCHHHHHHHHhcCCCCCCCCCCCCCCHHHHHHHhcCCHHHHHHHHhcCCCCCC
Q 042183          109 RMMNKEKHTALHEAVFHKIVDVVKILTREDLDYPYSANNYNKTPLCMVAEYEHSSHMVVAILKNCTSVSH  178 (179)
Q Consensus       109 ~~~~~~g~t~l~~A~~~g~~~~~~~Ll~~~~~~~~~~~~~g~tpl~~A~~~~~~~~~~~~Ll~~g~~~~~  178 (179)
                        ++..|.||||+|+..|+.+++++|++.|++++ .+|..|.||||+|+. .|+.+++++|+++|++++.
T Consensus        66 --~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~-~~d~~g~tpL~~A~~-~~~~~~v~~Ll~~ga~~~~  131 (239)
T 1ycs_B           66 --PNDEGITALHNAVCAGHTEIVKFLVQFGVNVN-AADSDGWTPLHCAAS-CNNVQVCKFLVESGAAVFA  131 (239)
T ss_dssp             --CCTTSCCHHHHHHHHTCHHHHHHHHHHTCCTT-CCCTTCCCHHHHHHH-TTCHHHHHHHHHTTCCTTC
T ss_pred             --cCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCC-ccCCCCCCHHHHHHH-cCCHHHHHHHHHcCCCcce
Confidence              89999999999999999999999999999986 899999999999999 9999999999999998864

>1dcq_A PYK2-associated protein beta; zinc-binding module, ankyrin repeats, metal binding protein; 2.10A {Mus musculus} SCOP: d.211.1.1 g.45.1.1

Probab=99.93  E-value=9.9e-25  Score=159.44  Aligned_cols=123  Identities=18%  Similarity=0.187  Sum_probs=112.8

Q ss_pred             HHHHHHHHcCChHHHHHHHHHHHHhhCccc------ccccCCCCCcHHHHHHHHc---CCHHHHHHHHHhhcccCCchhh
Q 042183           32 PNLFKAAAAGNLEPFKDMAREEILEICPSL------LLQVNAKGDSRSLLVAAKF---GHCDIVSVLIERAKLLQHEDEE  102 (179)
Q Consensus        32 ~~l~~A~~~g~~~~~~~ll~~~~~~~~~~~------~~~~~~~g~t~~L~~A~~~---g~~~~v~~ll~~~~~~~~~~~~  102 (179)
                      .+|+.|+..|+.+.++.+++      .+..      ++..+..|.| |||+|+..   |+.+++++|+++|++++.    
T Consensus       132 ~~l~~a~~~~d~~~~~~ll~------~g~~~~~~~~l~~~~~~g~t-~Lh~A~~~~~~~~~~~v~~Ll~~ga~in~----  200 (278)
T 1dcq_A          132 HSLCEAVKTRDIFGLLQAYA------DGVDLTEKIPLANGHEPDET-ALHLAVRSVDRTSLHIVDFLVQNSGNLDK----  200 (278)
T ss_dssp             HHHHHHHHTTCHHHHHHHHH------TTCCTTSBCCCSSCSSTTCB-HHHHHHHHCCTTTHHHHHHHHHHCSCTTC----
T ss_pred             hhhhhHhhhcccHHHHHHHH------hhcchhhhccccccccCCCC-cchHHHHhcccchHHHHHHHHHCCCCccc----
Confidence            57999999999999998887      2333      4556889999 99999999   899999999999998887    


Q ss_pred             hhhHHHHhccCCCCcHHHHHHHcCCHHHHHHHHhcCCCCCCCCCCCCCCHHHHHHHhcCCHHHHHHHHhcCCC
Q 042183          103 LESGMIRMMNKEKHTALHEAVFHKIVDVVKILTREDLDYPYSANNYNKTPLCMVAEYEHSSHMVVAILKNCTS  175 (179)
Q Consensus       103 ~~~~~~~~~~~~g~t~l~~A~~~g~~~~~~~Ll~~~~~~~~~~~~~g~tpl~~A~~~~~~~~~~~~Ll~~g~~  175 (179)
                              +|..|+||||+|+..|+.+++++|++.|++++ .+|..|.||||+|+. .|+.+++++|+++|++
T Consensus       201 --------~d~~g~TpLh~A~~~g~~~~v~~Ll~~gad~~-~~d~~g~tpL~~A~~-~~~~~~v~~Ll~~ga~  263 (278)
T 1dcq_A          201 --------QTGKGSTALHYCCLTDNAECLKLLLRGKASIE-IANESGETPLDIAKR-LKHEHCEELLTQALSG  263 (278)
T ss_dssp             --------CCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTT-CCCTTSCCHHHHHHH-TTCHHHHHHHHHHHTT
T ss_pred             --------cCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCC-CccCCCCCHHHHHHH-cCCHHHHHHHHHcCCC
Confidence                    99999999999999999999999999999987 899999999999999 9999999999999875

>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A

Probab=99.93  E-value=2.7e-24  Score=153.24  Aligned_cols=147  Identities=22%  Similarity=0.217  Sum_probs=116.5

Q ss_pred             cccCCHHHHHHHHcCChHHHHHHHHHHHHhhCcccccccCCCCCcHHHHHHHHcCCHHHHHHHHHhhcccCCchhh----
Q 042183           27 QLQIDPNLFKAAAAGNLEPFKDMAREEILEICPSLLLQVNAKGDSRSLLVAAKFGHCDIVSVLIERAKLLQHEDEE----  102 (179)
Q Consensus        27 ~~~~~~~l~~A~~~g~~~~~~~ll~~~~~~~~~~~~~~~~~~g~t~~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~----  102 (179)
                      .....++||.|+..|+.+.++.|++.  +...+..++..|..|.| |||+|+..|+.+++++|+++|.+++.....    
T Consensus         6 d~~g~t~L~~A~~~g~~~~v~~Ll~~--~~~~~~~~~~~~~~g~t-~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~   82 (241)
T 1k1a_A            6 DEDGDTPLHIAVVQGNLPAVHRLVNL--FQQGGRELDIYNNLRQT-PLHLAVITTLPSVVRLLVTAGASPMALDRHGQTA   82 (241)
T ss_dssp             -CTTCCHHHHHHHTTCHHHHHHHHHH--HHHTTCCSCCCCTTSCC-HHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCH
T ss_pred             CCCCCcHHHHHHHcCCHHHHHHHHHH--HHhcCCCCCcccccCCC-HHHHHHHcCCHHHHHHHHHcCCCccccCCCCCCH
Confidence            34467899999999999999999862  23466788889999999 999999999999999999999887663221    


Q ss_pred             ---------------h--hhH----HHHhccCCCCcHHHHHHHcCCHHHHHHHHhcCCCCCCCCC-CCCCCHHHHHHHhc
Q 042183          103 ---------------L--ESG----MIRMMNKEKHTALHEAVFHKIVDVVKILTREDLDYPYSAN-NYNKTPLCMVAEYE  160 (179)
Q Consensus       103 ---------------~--~~~----~~~~~~~~g~t~l~~A~~~g~~~~~~~Ll~~~~~~~~~~~-~~g~tpl~~A~~~~  160 (179)
                                     .  ...    .++..+..|+||||+|+..|+.+++++|++.|++++ ..+ ..|.||||+|+. .
T Consensus        83 l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~-~~~~~~g~t~L~~A~~-~  160 (241)
T 1k1a_A           83 AHLACEHRSPTCLRALLDSAAPGTLDLEARNYDGLTALHVAVNTECQETVQLLLERGADID-AVDIKSGRSPLIHAVE-N  160 (241)
T ss_dssp             HHHHHHTTCHHHHHHHHHHSCTTSCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTT-CCCTTTCCCHHHHHHH-T
T ss_pred             HHHHHHcCCHHHHHHHHHcCCCccccccccCcCCCcHHHHHHHcCCHHHHHHHHHcCCCcc-cccccCCCcHHHHHHH-c
Confidence                           0  001    334556678888888888888888888888888876 455 678888888888 8


Q ss_pred             CCHHHHHHHHhcCCCCCC
Q 042183          161 HSSHMVVAILKNCTSVSH  178 (179)
Q Consensus       161 ~~~~~~~~Ll~~g~~~~~  178 (179)
                      |+.+++++|+++|++++.
T Consensus       161 ~~~~~v~~Ll~~g~~~~~  178 (241)
T 1k1a_A          161 NSLSMVQLLLQHGANVNA  178 (241)
T ss_dssp             TCHHHHHHHHHTTCCTTC
T ss_pred             CCHHHHHHHHHcCCCCCC
Confidence            888888888888887753

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1

Probab=99.93  E-value=1.3e-24  Score=167.52  Aligned_cols=126  Identities=24%  Similarity=0.259  Sum_probs=89.7

Q ss_pred             HHHHHHHHcCChHHHHHHHHHHHHhhCcccccccCCCCCcHHHHHHHHcCCHHHHHHHHHhhcccCCchhhhhhHHHHhc
Q 042183           32 PNLFKAAAAGNLEPFKDMAREEILEICPSLLLQVNAKGDSRSLLVAAKFGHCDIVSVLIERAKLLQHEDEELESGMIRMM  111 (179)
Q Consensus        32 ~~l~~A~~~g~~~~~~~ll~~~~~~~~~~~~~~~~~~g~t~~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~~~~~~~~~  111 (179)
                      +|||.|+..|+.++++.|++      .+..++..+..|.| |||+|+..|+.+++++|+++|...+.            +
T Consensus       247 t~L~~A~~~g~~~~v~~Ll~------~~~~~~~~~~~g~t-~L~~A~~~~~~~~~~~Ll~~g~~~~~------------~  307 (437)
T 1n11_A          247 TPLHLAAQEGHAEMVALLLS------KQANGNLGNKSGLT-PLHLVAQEGHVPVADVLIKHGVMVDA------------T  307 (437)
T ss_dssp             CHHHHHHHTTCHHHHHHHHT------TTCCTTCCCTTCCC-HHHHHHHHTCHHHHHHHHHHTCCTTC------------C
T ss_pred             CHHHHHHHCCCHHHHHHHHh------cCCCCCCCCCCCCC-HHHHHHHcCCHHHHHHHHhCCccCCC------------C
Confidence            34444444444444444433      23334444455555 55555555555555555555544444            8


Q ss_pred             cCCCCcHHHHHHHcCCHHHHHHHHhcCCCCCCCCCCCCCCHHHHHHHhcCCHHHHHHHHhcCCCCCC
Q 042183          112 NKEKHTALHEAVFHKIVDVVKILTREDLDYPYSANNYNKTPLCMVAEYEHSSHMVVAILKNCTSVSH  178 (179)
Q Consensus       112 ~~~g~t~l~~A~~~g~~~~~~~Ll~~~~~~~~~~~~~g~tpl~~A~~~~~~~~~~~~Ll~~g~~~~~  178 (179)
                      +..|+||||+|+..|+.+++++|++.|++++ .+|..|.||||+|+. .|+.+++++|+++|++++.
T Consensus       308 ~~~g~t~L~~A~~~g~~~~v~~Ll~~gad~n-~~~~~g~t~L~~A~~-~g~~~iv~~Ll~~ga~~~~  372 (437)
T 1n11_A          308 TRMGYTPLHVASHYGNIKLVKFLLQHQADVN-AKTKLGYSPLHQAAQ-QGHTDIVTLLLKNGASPNE  372 (437)
T ss_dssp             CSSCCCHHHHHHHSSCSHHHHHHHHTTCCTT-CCCTTSCCHHHHHHH-TTCHHHHHHHHHTTCCSCC
T ss_pred             CCCCCCHHHHHHHcCcHHHHHHHHhcCCCCC-CCCCCCCCHHHHHHH-CChHHHHHHHHHCcCCCCC
Confidence            8899999999999999999999999999976 889999999999999 9999999999999998864

>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus}

Probab=99.93  E-value=3.4e-25  Score=162.34  Aligned_cols=127  Identities=17%  Similarity=0.136  Sum_probs=86.1

Q ss_pred             cccCCHHHHHHHHcCChHHHHHHHHHHHHhhCcccccccCCCCCcHHHHHHHHcCCHHHHHHHHHhhcccCCchhhhhhH
Q 042183           27 QLQIDPNLFKAAAAGNLEPFKDMAREEILEICPSLLLQVNAKGDSRSLLVAAKFGHCDIVSVLIERAKLLQHEDEELESG  106 (179)
Q Consensus        27 ~~~~~~~l~~A~~~g~~~~~~~ll~~~~~~~~~~~~~~~~~~g~t~~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~~~~  106 (179)
                      .....+|||.|+..|+.++++.|++      .+..++..  +|.| |||+|+..|+.+++++|+++|++++.        
T Consensus        28 d~~g~t~L~~A~~~g~~~~v~~Ll~------~g~~~~~~--~g~t-~L~~A~~~g~~~~v~~Ll~~ga~~~~--------   90 (285)
T 3kea_A           28 DVHGHSASYYAIADNNVRLVCTLLN------AGALKNLL--ENEF-PLHQAATLEDTKIVKILLFSGLDDSQ--------   90 (285)
T ss_dssp             CTTSCCHHHHHHHTTCHHHHHHHHH------TTGGGSCC--TTCC-HHHHHTTSSSCHHHHHHHHTTCCTTC--------
T ss_pred             CCCCCCHHHHHHHcCCHHHHHHHHh------CCCCCCCC--CCCC-HHHHHHHcCCHHHHHHHHHCCCCCCC--------
Confidence            3445678888888888888888877      34445544  3677 77777777777777777777776665        


Q ss_pred             HHHhccCCCCcHHHHHHHcCCHHHHHHHHhcCCCCCCCCCCCC-CCHHHHHHHhcCCHHHHHHHHhcCCCC
Q 042183          107 MIRMMNKEKHTALHEAVFHKIVDVVKILTREDLDYPYSANNYN-KTPLCMVAEYEHSSHMVVAILKNCTSV  176 (179)
Q Consensus       107 ~~~~~~~~g~t~l~~A~~~g~~~~~~~Ll~~~~~~~~~~~~~g-~tpl~~A~~~~~~~~~~~~Ll~~g~~~  176 (179)
                          ++..|+||||+|+..|+.+++++|++.|++++ ..+..| .||||+|+. .|+.+++++|+++|+++
T Consensus        91 ----~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~-~~~~~g~~t~L~~A~~-~~~~~~v~~Ll~~g~~~  155 (285)
T 3kea_A           91 ----FDDKGNTALYYAVDSGNMQTVKLFVKKNWRLM-FYGKTGWKTSFYHAVM-LNDVSIVSYFLSEIPST  155 (285)
T ss_dssp             ----CCTTSCCHHHHHHHTTCHHHHHHHHHHCGGGG-GCSSSGGGSHHHHHHH-TTCHHHHHHHHTTSCTT
T ss_pred             ----cCCCCCcHHHHHHHcCCHHHHHHHHhcCCCCC-ccCCCCCCCHHHHHHH-cCCHHHHHHHHhCCCcc
Confidence                66666666666666666666666666666654 556666 566666666 66666666666666543

>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1

Probab=99.93  E-value=1.4e-24  Score=159.43  Aligned_cols=128  Identities=17%  Similarity=0.197  Sum_probs=115.5

Q ss_pred             CCHHHHHHHHcCChHHHHHHHHHHHHhhCcccccccCCCCCcHHHHHHHHcCCHHHHHHHHHhhcccCCchhhhhhHHHH
Q 042183           30 IDPNLFKAAAAGNLEPFKDMAREEILEICPSLLLQVNAKGDSRSLLVAAKFGHCDIVSVLIERAKLLQHEDEELESGMIR  109 (179)
Q Consensus        30 ~~~~l~~A~~~g~~~~~~~ll~~~~~~~~~~~~~~~~~~g~t~~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~~~~~~~  109 (179)
                      ..++|+.|+..|+.+.++.|++      .+..++..|..|.| |||+|+..|+.+++++|+++|++++.           
T Consensus        40 ~~t~l~~A~~~g~~~~v~~Ll~------~g~~~~~~~~~g~t-~L~~A~~~g~~~~v~~Ll~~ga~~~~-----------  101 (299)
T 1s70_B           40 DGAVFLAACSSGDTEEVLRLLE------RGADINYANVDGLT-ALHQACIDDNVDMVKFLVENGANINQ-----------  101 (299)
T ss_dssp             HHHHHHHHHHHTCHHHHHHHHH------HCCCTTCBCTTCCB-HHHHHHHTTCHHHHHHHHHTTCCTTC-----------
T ss_pred             CccHHHHHHHcCCHHHHHHHHH------cCCCCcccCCCCCC-HHHHHHHcCCHHHHHHHHHCCCCCCC-----------
Confidence            3488999999999999999987      55678889999999 99999999999999999999998877           


Q ss_pred             hccCCCCcHHHHHHHcCCHHHHHHHHhcCCCCCCCCC-------------------------------------------
Q 042183          110 MMNKEKHTALHEAVFHKIVDVVKILTREDLDYPYSAN-------------------------------------------  146 (179)
Q Consensus       110 ~~~~~g~t~l~~A~~~g~~~~~~~Ll~~~~~~~~~~~-------------------------------------------  146 (179)
                       ++..|+||||+|+..|+.+++++|++.|+++. ..+                                           
T Consensus       102 -~~~~g~tpL~~A~~~g~~~~v~~Ll~~g~~~~-~~~~~g~t~l~~A~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~  179 (299)
T 1s70_B          102 -PDNEGWIPLHAAASCGYLDIAEYLISQGAHVG-AVNSEGDTPLDIAEEEAMEELLQNEVNRQGVDIEAARKEEERIMLR  179 (299)
T ss_dssp             -CCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTT-CCCTTSCCHHHHCCSHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHH
T ss_pred             -CCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCC-CcCCCCCCHHHHHHhcchHHHHHHHHhhcCCCchhhhhhhhhHHHH
Confidence             89999999999999999999999999998764 333                                           


Q ss_pred             -----------------CCCCCHHHHHHHhcCCHHHHHHHHhcCCCCCC
Q 042183          147 -----------------NYNKTPLCMVAEYEHSSHMVVAILKNCTSVSH  178 (179)
Q Consensus       147 -----------------~~g~tpl~~A~~~~~~~~~~~~Ll~~g~~~~~  178 (179)
                                       ..|.||||+|+. .|+.+++++|+++|++++.
T Consensus       180 ~~~~~l~~~~~~~~~~~~~g~t~L~~A~~-~g~~~~v~~Ll~~g~d~~~  227 (299)
T 1s70_B          180 DARQWLNSGHINDVRHAKSGGTALHVAAA-KGYTEVLKLLIQARYDVNI  227 (299)
T ss_dssp             HHHHHHHHTCCCCCCCTTTCCCHHHHHHH-HTCHHHHHHHHTTTCCTTC
T ss_pred             HHHHHHhccCcchhhhcCCCCCHHHHHHH-CCcHHHHHHHHHcCCCCCC
Confidence                             357789999999 9999999999999998864

>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1

Probab=99.93  E-value=2.3e-24  Score=156.72  Aligned_cols=131  Identities=19%  Similarity=0.174  Sum_probs=121.0

Q ss_pred             cCCHHHHHHHHcCChHHHHHHHHHHHHhhCcccccccCCCCCcHHHHHHHHcCC----HHHHHHHHHhhcccCCchhhhh
Q 042183           29 QIDPNLFKAAAAGNLEPFKDMAREEILEICPSLLLQVNAKGDSRSLLVAAKFGH----CDIVSVLIERAKLLQHEDEELE  104 (179)
Q Consensus        29 ~~~~~l~~A~~~g~~~~~~~ll~~~~~~~~~~~~~~~~~~g~t~~L~~A~~~g~----~~~v~~ll~~~~~~~~~~~~~~  104 (179)
                      ...++||.|+..|+.++++.|++     ..+..++..+..|.| |||+|+..++    .+++++|+++|++++.      
T Consensus       147 ~g~t~L~~A~~~~~~~~v~~Ll~-----~~~~~~~~~~~~g~t-~l~~a~~~~~~~~~~~i~~~Ll~~g~~~~~------  214 (285)
T 1wdy_A          147 GGATALMDAAEKGHVEVLKILLD-----EMGADVNACDNMGRN-ALIHALLSSDDSDVEAITHLLLDHGADVNV------  214 (285)
T ss_dssp             CCCCHHHHHHHHTCHHHHHHHHH-----TSCCCTTCCCTTSCC-HHHHHHHCSCTTTHHHHHHHHHHTTCCSSC------
T ss_pred             CCCcHHHHHHHcCCHHHHHHHHH-----hcCCCCCccCCCCCC-HHHHHHHccccchHHHHHHHHHHcCCCCCC------
Confidence            34589999999999999999987     347788999999999 9999999999    8999999999998887      


Q ss_pred             hHHHHhccCCCCcHHHHHHHcCCHHHHHHHHh-cCCCCCCCCCCCCCCHHHHHHHhcCCHHHHHHHHhcCCCCCCC
Q 042183          105 SGMIRMMNKEKHTALHEAVFHKIVDVVKILTR-EDLDYPYSANNYNKTPLCMVAEYEHSSHMVVAILKNCTSVSHR  179 (179)
Q Consensus       105 ~~~~~~~~~~g~t~l~~A~~~g~~~~~~~Ll~-~~~~~~~~~~~~g~tpl~~A~~~~~~~~~~~~Ll~~g~~~~~r  179 (179)
                            ++..|.||||+|+..|+.+++++|++ .|++++ ..|..|.||||+|+. .|+.+++++|+++|++++.+
T Consensus       215 ------~~~~g~t~L~~A~~~~~~~~v~~Ll~~~g~~~~-~~~~~g~t~l~~A~~-~~~~~i~~~Ll~~Ga~~~~~  282 (285)
T 1wdy_A          215 ------RGERGKTPLILAVEKKHLGLVQRLLEQEHIEIN-DTDSDGKTALLLAVE-LKLKKIAELLCKRGASTDCG  282 (285)
T ss_dssp             ------CCTTSCCHHHHHHHTTCHHHHHHHHHSSSCCTT-CCCTTSCCHHHHHHH-TTCHHHHHHHHHHSSCSCCS
T ss_pred             ------cCCCCCcHHHHHHHcCCHHHHHHHHhccCCCcc-ccCCCCCcHHHHHHH-cCcHHHHHHHHHcCCCCCcc
Confidence                  89999999999999999999999999 788876 899999999999999 99999999999999998753

>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major}

Probab=99.93  E-value=5.3e-25  Score=166.13  Aligned_cols=128  Identities=16%  Similarity=0.219  Sum_probs=118.4

Q ss_pred             cccCCHHHHHHHHcC--ChHHHHHHHHHHHHhhCcccccccCCCCCcHHHHHHHHcCCHHHHHHHHHhhcc-----cCCc
Q 042183           27 QLQIDPNLFKAAAAG--NLEPFKDMAREEILEICPSLLLQVNAKGDSRSLLVAAKFGHCDIVSVLIERAKL-----LQHE   99 (179)
Q Consensus        27 ~~~~~~~l~~A~~~g--~~~~~~~ll~~~~~~~~~~~~~~~~~~g~t~~L~~A~~~g~~~~v~~ll~~~~~-----~~~~   99 (179)
                      .....++||.|+..|  +.++++.|++      .+..++..|..|.| |||+|+..|+.+++++|++++++     .+. 
T Consensus       135 ~~~g~t~L~~A~~~g~~~~~~v~~Ll~------~ga~~~~~d~~g~t-~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~-  206 (364)
T 3ljn_A          135 HCKGQTALHWCVGLGPEYLEMIKILVQ------LGASPTAKDKADET-PLMRAMEFRNREALDLMMDTVPSKSSLRLDY-  206 (364)
T ss_dssp             EESCCCHHHHHHHSCGGGHHHHHHHHH------HTCCTTCCCTTSCC-HHHHHHHTTCHHHHHHHHHHCSCSSSCCTTC-
T ss_pred             CCCCCCHHHHHHHcCCchHHHHHHHHH------cCCCCcccCCCCCC-HHHHHHHcCCHHHHHHHHhcccccccccccc-
Confidence            334568999999999  9999999998      56778899999999 99999999999999999999987     555 


Q ss_pred             hhhhhhHHHHhccCCCCcHHHHHHHcCCHHHHHHHHhcCCCCCCCCCCCCCCHHHHHHHhcCCHHHHHHHHhcCCC
Q 042183          100 DEELESGMIRMMNKEKHTALHEAVFHKIVDVVKILTREDLDYPYSANNYNKTPLCMVAEYEHSSHMVVAILKNCTS  175 (179)
Q Consensus       100 ~~~~~~~~~~~~~~~g~t~l~~A~~~g~~~~~~~Ll~~~~~~~~~~~~~g~tpl~~A~~~~~~~~~~~~Ll~~g~~  175 (179)
                                 ++..|+||||+|+..|+.+++++|++.|++++ ..|..|.|||++|+. .|+.+++++|+++|++
T Consensus       207 -----------~~~~g~t~L~~A~~~g~~~~v~~Ll~~gad~~-~~d~~g~tpL~~A~~-~g~~~~v~~Ll~~~~~  269 (364)
T 3ljn_A          207 -----------ANKQGNSHLHWAILINWEDVAMRFVEMGIDVN-MEDNEHTVPLYLSVR-AAMVLLTKELLQKTDV  269 (364)
T ss_dssp             -----------CCTTCCCTTHHHHTTTCHHHHHHHHTTTCCTT-CCCTTSCCHHHHHHH-TCCHHHHHHHHHHSCH
T ss_pred             -----------cCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCC-CCCCCCCCHHHHHHH-hChHHHHHHHHHcCCc
Confidence                       89999999999999999999999999999986 899999999999999 9999999999999865

>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1

Probab=99.93  E-value=2.8e-24  Score=156.28  Aligned_cols=128  Identities=16%  Similarity=0.124  Sum_probs=117.4

Q ss_pred             CCHHHHHHHHcCChHHHHHHHHHHHHhhCccccccc-CCCCCcHHHHHHHHcCCHHHHHHHHHhhcccCCchhhhhhHHH
Q 042183           30 IDPNLFKAAAAGNLEPFKDMAREEILEICPSLLLQV-NAKGDSRSLLVAAKFGHCDIVSVLIERAKLLQHEDEELESGMI  108 (179)
Q Consensus        30 ~~~~l~~A~~~g~~~~~~~ll~~~~~~~~~~~~~~~-~~~g~t~~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~~~~~~  108 (179)
                      ..++|+.|++.|+.+.++.|++      .+..++.. +..|.| |||+|+..|+.+++++|+++|++++.          
T Consensus         5 g~~~L~~A~~~g~~~~v~~Ll~------~g~~~~~~~~~~g~t-~L~~A~~~g~~~~v~~Ll~~g~~~~~----------   67 (285)
T 1wdy_A            5 DNHLLIKAVQNEDVDLVQQLLE------GGANVNFQEEEGGWT-PLHNAVQMSREDIVELLLRHGADPVL----------   67 (285)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHH------TTCCTTCCCTTTCCC-HHHHHHHTTCHHHHHHHHHTTCCTTC----------
T ss_pred             cchHHHHHHHcCCHHHHHHHHH------cCCCcccccCCCCCc-HHHHHHHcCCHHHHHHHHHcCCCCcc----------
Confidence            3578999999999999999987      45566666 788999 99999999999999999999998877          


Q ss_pred             HhccCCCCcHHHHHHHcCCHHHHHHHHhcCCCCCCCCCCCCCCHHHHHHHhcCCHHHHHHHHhcCCCCCC
Q 042183          109 RMMNKEKHTALHEAVFHKIVDVVKILTREDLDYPYSANNYNKTPLCMVAEYEHSSHMVVAILKNCTSVSH  178 (179)
Q Consensus       109 ~~~~~~g~t~l~~A~~~g~~~~~~~Ll~~~~~~~~~~~~~g~tpl~~A~~~~~~~~~~~~Ll~~g~~~~~  178 (179)
                        ++..|.||||+|+..|+.+++++|++.|++++ ..+..|.||||+|+. .|+.+++++|+++|++++.
T Consensus        68 --~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~-~~~~~g~t~L~~A~~-~~~~~~~~~Ll~~g~~~~~  133 (285)
T 1wdy_A           68 --RKKNGATPFLLAAIAGSVKLLKLFLSKGADVN-ECDFYGFTAFMEAAV-YGKVKALKFLYKRGANVNL  133 (285)
T ss_dssp             --CCTTCCCHHHHHHHHTCHHHHHHHHHTTCCTT-CBCTTCCBHHHHHHH-TTCHHHHHHHHHTTCCTTC
T ss_pred             --cCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCC-ccCcccCCHHHHHHH-hCCHHHHHHHHHhCCCccc
Confidence              89999999999999999999999999999976 889999999999999 9999999999999988753

>4g8k_A 2-5A-dependent ribonuclease; ankyrin-repeat domain, single-stranded RNA, hydrolase; 2.40A {Homo sapiens} PDB: 4g8l_A*

Probab=99.92  E-value=9.8e-25  Score=163.10  Aligned_cols=142  Identities=16%  Similarity=0.122  Sum_probs=118.4

Q ss_pred             cCCHHHHHHHHcCChHHHHHHHHHHHHhhCcccccccCC-CCCcHHHHHHHHcCCHHHHHHHHHhhcccCCchhh-----
Q 042183           29 QIDPNLFKAAAAGNLEPFKDMAREEILEICPSLLLQVNA-KGDSRSLLVAAKFGHCDIVSVLIERAKLLQHEDEE-----  102 (179)
Q Consensus        29 ~~~~~l~~A~~~g~~~~~~~ll~~~~~~~~~~~~~~~~~-~g~t~~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~-----  102 (179)
                      +.+++|+.|++.|++++|+.|++      .+..++.++. .|+| |||+|+..|+.+++++|+++|+.++.....     
T Consensus        24 ~~~t~L~~Av~~g~~~~V~~LL~------~Gadvn~~~~~~g~T-pLh~A~~~g~~~iv~~Ll~~ga~~~~~~~~~~~~~   96 (337)
T 4g8k_A           24 EDNHLLIKAVQNEDVDLVQQLLE------GGANVNFQEEEGGWT-PLHNAVQMSREDIVELLLRHGADPVLRKKNGATPF   96 (337)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHH------HTCCTTCCCTTTCCC-HHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHH
T ss_pred             CCChHHHHHHHcCCHHHHHHHHH------CCCCCCccCCCCCcC-HHHHHHHcCCHHHHHHHHHcCCchhhhccCCCchh
Confidence            34588999999999999999998      5667787775 5899 999999999999999999999987763322     


Q ss_pred             ----------------hhhHHHHhccCCCCcHHHHHHHcCCHHHHHHHHhcCCCCCC---------CCCCCCCCHHHHHH
Q 042183          103 ----------------LESGMIRMMNKEKHTALHEAVFHKIVDVVKILTREDLDYPY---------SANNYNKTPLCMVA  157 (179)
Q Consensus       103 ----------------~~~~~~~~~~~~g~t~l~~A~~~g~~~~~~~Ll~~~~~~~~---------~~~~~g~tpl~~A~  157 (179)
                                      .....++.++..|.||+|+|+..|+.+++++|++.|++++.         ..+..|.||||+|+
T Consensus        97 ~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~t~l~~A~~~~~~~~~~~ll~~ga~~~~~~~~~~~~~~~~~~g~T~L~~A~  176 (337)
T 4g8k_A           97 ILAAIAGSVKLLKLFLSKGADVNECDFYGFTAFMEAAVYGKVKALKFLYKRGANVNLRRKTKEDQERLRKGGATALMDAA  176 (337)
T ss_dssp             HHHHHHTCHHHHHHHHTTTCCTTCBCTTCCBHHHHHHHTTCHHHHHHHHHTTCCTTCCCCCC-----CTTCSCCHHHHHH
T ss_pred             HHHHhcccchhhHHhhhccchhhhhccCCCCHHHHHHHcCcHHHHHHHHHcCCCcchhhccccccccccCCCCcHHHHHH
Confidence                            22234567888999999999999999999999999987641         23456899999999


Q ss_pred             HhcCCHHHHHHHHh-cCCCCCC
Q 042183          158 EYEHSSHMVVAILK-NCTSVSH  178 (179)
Q Consensus       158 ~~~~~~~~~~~Ll~-~g~~~~~  178 (179)
                      . .|+.+++++|++ .|++++.
T Consensus       177 ~-~g~~~~v~~LL~~~gad~n~  197 (337)
T 4g8k_A          177 E-KGHVEVLKILLDEMGADVNA  197 (337)
T ss_dssp             H-HTCHHHHHHHHHHSCCCTTC
T ss_pred             H-CCCHHHHHHHHhccCCCcCc
Confidence            9 999999999996 4788764

>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A

Probab=99.92  E-value=1.2e-24  Score=156.68  Aligned_cols=142  Identities=18%  Similarity=0.167  Sum_probs=113.7

Q ss_pred             CHHHHHHHHcCChHHHHHHHHHHHHhhCcccccc----cCCCCCcHHHHHHHHc---CCHHHHHHHHHhhcccCCchhhh
Q 042183           31 DPNLFKAAAAGNLEPFKDMAREEILEICPSLLLQ----VNAKGDSRSLLVAAKF---GHCDIVSVLIERAKLLQHEDEEL  103 (179)
Q Consensus        31 ~~~l~~A~~~g~~~~~~~ll~~~~~~~~~~~~~~----~~~~g~t~~L~~A~~~---g~~~~v~~ll~~~~~~~~~~~~~  103 (179)
                      .++||.|+..|+.+.++.|++..  ...+..++.    .|..|.| |||+|+..   |+.+++++|++.|+..+..... 
T Consensus         3 ~t~L~~A~~~g~~~~v~~ll~~l--~~~g~~i~~~~~~~d~~g~t-~L~~A~~~~~~g~~~~v~~Ll~~g~~~~~~~~~-   78 (256)
T 2etb_A            3 RDRLFSVVSRGVPEELTGLLEYL--RWNSKYLTDSAYTEGSTGKT-CLMKAVLNLQDGVNACIMPLLQIDKDSGNPKPL-   78 (256)
T ss_dssp             HHHHHHHHHHTCGGGGTTHHHHH--HHHTCCTTSGGGSBTTTTBC-HHHHHHHTCBTTBCTTHHHHHHHHHHTTCSSCG-
T ss_pred             ccHHHHHHHcCCHHHHHHHHHHH--HHcCCCcccccccCCCCCCC-HHHHHHHccccchHHHHHHHHhcCCcccchhhh-
Confidence            47899999999999776665411  124556676    8999999 99999999   9999999999999876530000 


Q ss_pred             hhHHHHhccCCCCcHHHHHHHcCCHHHHHHHHhcCCCCCCCCCCC-------------CCCHHHHHHHhcCCHHHHHHHH
Q 042183          104 ESGMIRMMNKEKHTALHEAVFHKIVDVVKILTREDLDYPYSANNY-------------NKTPLCMVAEYEHSSHMVVAIL  170 (179)
Q Consensus       104 ~~~~~~~~~~~g~t~l~~A~~~g~~~~~~~Ll~~~~~~~~~~~~~-------------g~tpl~~A~~~~~~~~~~~~Ll  170 (179)
                      ........|..|+||||+|+..|+.+++++|++.|++++ ..+..             |.||||+|+. .|+.+++++|+
T Consensus        79 ~~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~-~~~~~~~~~~~~~~~~~~g~tpL~~A~~-~~~~~~v~~Ll  156 (256)
T 2etb_A           79 VNAQCTDEFYQGHSALHIAIEKRSLQCVKLLVENGADVH-LRACGRFFQKHQGTCFYFGELPLSLAAC-TKQWDVVTYLL  156 (256)
T ss_dssp             GGCCCCSTTTTTCCHHHHHHHTTCHHHHHHHHHTTCCTT-CCCCSGGGSCCSSSCCCSCSSHHHHHHH-TTCHHHHHHHH
T ss_pred             cccccccccccCCCHHHHHHHcCCHHHHHHHHHcCCCCC-cccccccccccccccccCCCCHHHHHHH-cCCHHHHHHHH
Confidence            000001134679999999999999999999999999986 66665             9999999999 99999999999


Q ss_pred             h---cCCCCCC
Q 042183          171 K---NCTSVSH  178 (179)
Q Consensus       171 ~---~g~~~~~  178 (179)
                      +   +|++++.
T Consensus       157 ~~~~~ga~~n~  167 (256)
T 2etb_A          157 ENPHQPASLEA  167 (256)
T ss_dssp             HCSSCCCCTTC
T ss_pred             hccccCCCcCc
Confidence            9   8998864

>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens}

Probab=99.92  E-value=3.8e-24  Score=156.76  Aligned_cols=142  Identities=20%  Similarity=0.168  Sum_probs=119.7

Q ss_pred             ccCCHHHHHHHHcCChHHHHHHHHHHHHhhCcccccccCCCCCcHHHHHHHHcCCHHHHHHHHHhhcccCCchhh-----
Q 042183           28 LQIDPNLFKAAAAGNLEPFKDMAREEILEICPSLLLQVNAKGDSRSLLVAAKFGHCDIVSVLIERAKLLQHEDEE-----  102 (179)
Q Consensus        28 ~~~~~~l~~A~~~g~~~~~~~ll~~~~~~~~~~~~~~~~~~g~t~~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~-----  102 (179)
                      ....+|||.|+..|+.++++.|++      .+..++..|..|.| |||+|+..|+.+++++|++++.+.+.....     
T Consensus        90 ~~g~t~L~~A~~~g~~~~v~~Ll~------~ga~~~~~~~~g~t-~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~g~t~L~  162 (285)
T 3d9h_A           90 ADHVSPLHEACLGGHLSCVKILLK------HGAQVNGVTADWHT-PLFNACVSGSWDCVNLLLQHGASVQPESDLASPIH  162 (285)
T ss_dssp             TTCCCHHHHHHHTTCHHHHHHHHH------TTCCSSCCCTTCCC-HHHHHHHHTCHHHHHHHHHTTCCSSCSCTTSCHHH
T ss_pred             CCCCCHHHHHHHCCcHHHHHHHHH------CCCCCCCCCCCCCC-HHHHHHHcCHHHHHHHHHHCCCCCCCCCCCCCHHH
Confidence            345689999999999999999987      56777888888999 999999999999999999988776542211     


Q ss_pred             ---------------hhhHHHHhccCCCCcHHHHHHHcCCHHHHHHHHhcCCCCCCCCCCCCCCHHHHHHHhcCCHHHHH
Q 042183          103 ---------------LESGMIRMMNKEKHTALHEAVFHKIVDVVKILTREDLDYPYSANNYNKTPLCMVAEYEHSSHMVV  167 (179)
Q Consensus       103 ---------------~~~~~~~~~~~~g~t~l~~A~~~g~~~~~~~Ll~~~~~~~~~~~~~g~tpl~~A~~~~~~~~~~~  167 (179)
                                     ..+..++.++..|+||||+|+..|+.+++++|++.|++++  .+..|.||||+|+. .|+.++++
T Consensus       163 ~A~~~g~~~~v~~Ll~~g~~~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~--~~~~g~t~L~~A~~-~~~~~~v~  239 (285)
T 3d9h_A          163 EAARRGHVECVNSLIAYGGNIDHKISHLGTPLYLACENQQRACVKKLLESGADVN--QGKGQDSPLHAVVR-TASEELAC  239 (285)
T ss_dssp             HHHHHTCHHHHHHHHHTTCCTTCCBTTTBCHHHHHHHTTCHHHHHHHHHTTCCTT--CCBTTBCHHHHHHH-TTCHHHHH
T ss_pred             HHHHcCCHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHcCcHHHHHHHHHCCCCCC--CCCCCCCHHHHHHH-cCCHHHHH
Confidence                           1122345678899999999999999999999999999976  48899999999999 99999999


Q ss_pred             HHHhcCCCCCCC
Q 042183          168 AILKNCTSVSHR  179 (179)
Q Consensus       168 ~Ll~~g~~~~~r  179 (179)
                      +|+++|++++.+
T Consensus       240 ~Ll~~gad~~~~  251 (285)
T 3d9h_A          240 LLMDFGADTQAK  251 (285)
T ss_dssp             HHHHTTCCTTCC
T ss_pred             HHHHCCCCCCCc
Confidence            999999998653

>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major}

Probab=99.92  E-value=1.1e-24  Score=164.47  Aligned_cols=99  Identities=13%  Similarity=0.162  Sum_probs=90.8

Q ss_pred             cCCCCCcHHHHHHHHcC--CHHHHHHHHHhhcccCCchhhhhhHHHHhccCCCCcHHHHHHHcCCHHHHHHHHhcCCC--
Q 042183           65 VNAKGDSRSLLVAAKFG--HCDIVSVLIERAKLLQHEDEELESGMIRMMNKEKHTALHEAVFHKIVDVVKILTREDLD--  140 (179)
Q Consensus        65 ~~~~g~t~~L~~A~~~g--~~~~v~~ll~~~~~~~~~~~~~~~~~~~~~~~~g~t~l~~A~~~g~~~~~~~Ll~~~~~--  140 (179)
                      .+..|.| |||+|+..|  +.+++++|+++|++++.            ++..|+||||+|+..|+.+++++|++.|++  
T Consensus       134 ~~~~g~t-~L~~A~~~g~~~~~~v~~Ll~~ga~~~~------------~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~  200 (364)
T 3ljn_A          134 KHCKGQT-ALHWCVGLGPEYLEMIKILVQLGASPTA------------KDKADETPLMRAMEFRNREALDLMMDTVPSKS  200 (364)
T ss_dssp             EEESCCC-HHHHHHHSCGGGHHHHHHHHHHTCCTTC------------CCTTSCCHHHHHHHTTCHHHHHHHHHHCSCSS
T ss_pred             CCCCCCC-HHHHHHHcCCchHHHHHHHHHcCCCCcc------------cCCCCCCHHHHHHHcCCHHHHHHHHhcccccc
Confidence            7778889 999999999  88999999999888777            899999999999999999999999999988  


Q ss_pred             ---CCCCCCCCCCCHHHHHHHhcCCHHHHHHHHhcCCCCCC
Q 042183          141 ---YPYSANNYNKTPLCMVAEYEHSSHMVVAILKNCTSVSH  178 (179)
Q Consensus       141 ---~~~~~~~~g~tpl~~A~~~~~~~~~~~~Ll~~g~~~~~  178 (179)
                         ++ ..|..|.||||+|+. .|+.+++++|+++|++++.
T Consensus       201 ~~~~~-~~~~~g~t~L~~A~~-~g~~~~v~~Ll~~gad~~~  239 (364)
T 3ljn_A          201 SLRLD-YANKQGNSHLHWAIL-INWEDVAMRFVEMGIDVNM  239 (364)
T ss_dssp             SCCTT-CCCTTCCCTTHHHHT-TTCHHHHHHHHTTTCCTTC
T ss_pred             ccccc-ccCCCCCcHHHHHHH-cCCHHHHHHHHHcCCCCCC
Confidence               66 789999999999999 9999999999999999864

>1sw6_A Regulatory protein SWI6; transcription regulation, ankyrin repeats, cell-cycle; 2.10A {Saccharomyces cerevisiae} SCOP: d.211.1.1

Probab=99.92  E-value=1e-24  Score=162.75  Aligned_cols=132  Identities=18%  Similarity=0.122  Sum_probs=115.5

Q ss_pred             cccCCHHHHHHHHcCChHHHHHHHHHHHHhhCcccccccCCCCCcHHHHHHHHcCC---HHHHHHHHHhh-cccCCchhh
Q 042183           27 QLQIDPNLFKAAAAGNLEPFKDMAREEILEICPSLLLQVNAKGDSRSLLVAAKFGH---CDIVSVLIERA-KLLQHEDEE  102 (179)
Q Consensus        27 ~~~~~~~l~~A~~~g~~~~~~~ll~~~~~~~~~~~~~~~~~~g~t~~L~~A~~~g~---~~~v~~ll~~~-~~~~~~~~~  102 (179)
                      .....+|||.|+..|+.++++.|++      .+..++.+|..|.| |||+|+..|+   .++++.|++.+ .+.+     
T Consensus       128 d~~g~TpLh~Aa~~g~~~~v~~Ll~------~Gad~n~~d~~g~T-pLh~A~~~g~~~~~~~~~~ll~~~~~~~~-----  195 (327)
T 1sw6_A          128 DEHGNTPLHWLTSIANLELVKHLVK------HGSNRLYGDNMGES-CLVKAVKSVNNYDSGTFEALLDYLYPCLI-----  195 (327)
T ss_dssp             STTCCCHHHHHHHTTCHHHHHHHHH------TTCCTTBCCTTCCC-HHHHHHHSSHHHHTTCHHHHHHHHGGGGG-----
T ss_pred             CCCCCcHHHHHHHcCCHHHHHHHHH------cCCCCCCcCCCCCC-HHHHHHHhcccccHHHHHHHHHhhhcccc-----
Confidence            3456799999999999999999998      67888999999999 9999999998   68888888887 4343     


Q ss_pred             hhhHHHHhccCCCCcHHHHHHH----cCCHHHHHHHHhcCC---------------------------------------
Q 042183          103 LESGMIRMMNKEKHTALHEAVF----HKIVDVVKILTREDL---------------------------------------  139 (179)
Q Consensus       103 ~~~~~~~~~~~~g~t~l~~A~~----~g~~~~~~~Ll~~~~---------------------------------------  139 (179)
                             .++..|+||||+|+.    .|+.+++++|++.+.                                       
T Consensus       196 -------~~d~~g~tpLh~A~~~~~~~g~~~~v~~Ll~~~~~~~~~~~~~~i~~~~~~~g~~~~~~~~~g~t~L~~a~~~  268 (327)
T 1sw6_A          196 -------LEDSMNRTILHHIIITSGMTGCSAAAKYYLDILMGWIVKKQNRPIQSGTNEKESKPNDKNGERKDSILENLDL  268 (327)
T ss_dssp             -------EECTTCCCHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHGGGCCEEEC----------------CHHHHHCSH
T ss_pred             -------CCCCCCCCHHHHHHHHccccccHHHHHHHHHHHHHHHhcccchHHHhhhhcccCCcccccccCCChhHHHHHH
Confidence                   489999999999999    999999999987632                                       


Q ss_pred             ------CCCCCCCCCCCCHHHHHHHhcCCHHHHHHHHhcCCCCCCC
Q 042183          140 ------DYPYSANNYNKTPLCMVAEYEHSSHMVVAILKNCTSVSHR  179 (179)
Q Consensus       140 ------~~~~~~~~~g~tpl~~A~~~~~~~~~~~~Ll~~g~~~~~r  179 (179)
                            +++ .+|..|+||||+|+. .|+.+++++|+++|++++.+
T Consensus       269 ~~Ll~~~~n-~~d~~G~TpLh~A~~-~g~~~~v~~Ll~~Gad~~~~  312 (327)
T 1sw6_A          269 KWIIANMLN-AQDSNGDTCLNIAAR-LGNISIVDALLDYGADPFIA  312 (327)
T ss_dssp             HHHHHHTTT-CCCTTSCCHHHHHHH-HCCHHHHHHHHHTTCCTTCC
T ss_pred             HHHHHhCCC-CCCCCCCCHHHHHHH-cCCHHHHHHHHHcCCCCccc
Confidence                  344 788999999999999 99999999999999998753

>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus}

Probab=99.92  E-value=4.2e-25  Score=161.88  Aligned_cols=140  Identities=16%  Similarity=0.138  Sum_probs=104.6

Q ss_pred             CCHHHHHHHHcCChHHHHHHHHHHHHhhCcccccccCCCCCcHHHHHHHHcCCHHHHHHHHHhhcccCCchh----h---
Q 042183           30 IDPNLFKAAAAGNLEPFKDMAREEILEICPSLLLQVNAKGDSRSLLVAAKFGHCDIVSVLIERAKLLQHEDE----E---  102 (179)
Q Consensus        30 ~~~~l~~A~~~g~~~~~~~ll~~~~~~~~~~~~~~~~~~g~t~~L~~A~~~g~~~~v~~ll~~~~~~~~~~~----~---  102 (179)
                      ..+|||.|+..|+.++++.|++      .+..++.+|..|.| |||+|+..|+.+++++|+++|++++....    +   
T Consensus        62 g~t~L~~A~~~g~~~~v~~Ll~------~ga~~~~~d~~g~t-~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~g~~t~L~  134 (285)
T 3kea_A           62 NEFPLHQAATLEDTKIVKILLF------SGLDDSQFDDKGNT-ALYYAVDSGNMQTVKLFVKKNWRLMFYGKTGWKTSFY  134 (285)
T ss_dssp             TCCHHHHHTTSSSCHHHHHHHH------TTCCTTCCCTTSCC-HHHHHHHTTCHHHHHHHHHHCGGGGGCSSSGGGSHHH
T ss_pred             CCCHHHHHHHcCCHHHHHHHHH------CCCCCCCcCCCCCc-HHHHHHHcCCHHHHHHHHhcCCCCCccCCCCCCCHHH
Confidence            4688888888888888888887      56677788888888 88888888888888888888877665211    1   


Q ss_pred             -------------hhhHHHHhccC-CCCcHHHHHHHcCCHHHHHHHHhcCCCCCCCCCCCCCCH-HHHHHHhcCCHHHHH
Q 042183          103 -------------LESGMIRMMNK-EKHTALHEAVFHKIVDVVKILTREDLDYPYSANNYNKTP-LCMVAEYEHSSHMVV  167 (179)
Q Consensus       103 -------------~~~~~~~~~~~-~g~t~l~~A~~~g~~~~~~~Ll~~~~~~~~~~~~~g~tp-l~~A~~~~~~~~~~~  167 (179)
                                   +........+. .|+||||+|+..|+.+++++|++.|++++ ..+..|.|| ||+|+. .|+.++++
T Consensus       135 ~A~~~~~~~~v~~Ll~~g~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~gad~n-~~~~~g~t~~L~~A~~-~~~~~~v~  212 (285)
T 3kea_A          135 HAVMLNDVSIVSYFLSEIPSTFDLAILLSCIHITIKNGHVDMMILLLDYMTSTN-TNNSLLFIPDIKLAID-NKDIEMLQ  212 (285)
T ss_dssp             HHHHTTCHHHHHHHHTTSCTTCCCSTHHHHHHHHHHTTCHHHHHHHHHHHHHTC-TTCCCBCCTTHHHHHH-HTCHHHHH
T ss_pred             HHHHcCCHHHHHHHHhCCCccccccCCccHHHHHHHcChHHHHHHHHHcCCCCC-cccCCCCChHHHHHHH-cCCHHHHH
Confidence                         00000011222 67788888888888888888888888765 778888887 888888 88888888


Q ss_pred             HHHhcCCCCCC
Q 042183          168 AILKNCTSVSH  178 (179)
Q Consensus       168 ~Ll~~g~~~~~  178 (179)
                      +|+++|++++.
T Consensus       213 ~Ll~~gad~~~  223 (285)
T 3kea_A          213 ALFKYDINIYS  223 (285)
T ss_dssp             HHTTSCBCSTT
T ss_pred             HHHHcCCCCCC
Confidence            88888888764

>2b0o_E UPLC1; arfgap, structural genomics, structural genomics consortium, SGC, metal binding protein; 2.06A {Homo sapiens}

Probab=99.92  E-value=2e-24  Score=159.45  Aligned_cols=123  Identities=19%  Similarity=0.176  Sum_probs=113.4

Q ss_pred             HHHHHHHHcCChHHHHHHHHHHHHhhCcccccc------cCCCCCcHHHHHHHHc---CCHHHHHHHHHhhcccCCchhh
Q 042183           32 PNLFKAAAAGNLEPFKDMAREEILEICPSLLLQ------VNAKGDSRSLLVAAKF---GHCDIVSVLIERAKLLQHEDEE  102 (179)
Q Consensus        32 ~~l~~A~~~g~~~~~~~ll~~~~~~~~~~~~~~------~~~~g~t~~L~~A~~~---g~~~~v~~ll~~~~~~~~~~~~  102 (179)
                      .+|+.|+..|+++.++.|++      .+..++.      .+..|.| |||+|+..   |+.+++++|+++|++++.    
T Consensus       153 ~~L~~A~~~g~~~~v~~ll~------~g~d~~~~~~~~~~~~~g~t-~Lh~A~~~~~~~~~~iv~~Ll~~gadvn~----  221 (301)
T 2b0o_E          153 QRLWTAICNRDLLSVLEAFA------NGQDFGQPLPGPDAQAPEEL-VLHLAVKVANQASLPLVDFIIQNGGHLDA----  221 (301)
T ss_dssp             HHHHHHHHTTCHHHHHHHHH------TTCCTTSCEECSSSCSCEEC-HHHHHHHTCCTTTHHHHHHHHHHSSCTTC----
T ss_pred             HHHhhhhhccCHHHHHHHHh------cCCcccccCCCcccCCCCcc-HHHHHHHhcccCcHHHHHHHHhcCCCCCC----
Confidence            56999999999999999987      4555565      5889999 99999997   899999999999998887    


Q ss_pred             hhhHHHHhccCCCCcHHHHHHHcCCHHHHHHHHhcCCCCCCCCCCCCCCHHHHHHHhcCCHHHHHHHHhcCCC
Q 042183          103 LESGMIRMMNKEKHTALHEAVFHKIVDVVKILTREDLDYPYSANNYNKTPLCMVAEYEHSSHMVVAILKNCTS  175 (179)
Q Consensus       103 ~~~~~~~~~~~~g~t~l~~A~~~g~~~~~~~Ll~~~~~~~~~~~~~g~tpl~~A~~~~~~~~~~~~Ll~~g~~  175 (179)
                              +|..|+||||+|+..|+.+++++|++.|++++ .+|..|.|||++|+. .|+.+++++|+++|++
T Consensus       222 --------~d~~G~TpLh~A~~~g~~~~v~~Ll~~gad~~-~~d~~G~TpL~~A~~-~~~~~iv~~Ll~~ga~  284 (301)
T 2b0o_E          222 --------KAADGNTALHYAALYNQPDCLKLLLKGRALVG-TVNEAGETALDIARK-KHHKECEELLEQAQAG  284 (301)
T ss_dssp             --------CCTTCCCHHHHHHHTTCHHHHHHHHHTTCCCS-CCCTTSCCHHHHHHH-HTCHHHHHHHHHHHHH
T ss_pred             --------CCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCC-CcCCCCCCHHHHHHH-cCCHHHHHHHHHhcCC
Confidence                    99999999999999999999999999999986 899999999999999 9999999999998864

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1

Probab=99.92  E-value=4.1e-24  Score=164.75  Aligned_cols=123  Identities=24%  Similarity=0.282  Sum_probs=61.5

Q ss_pred             CHHHHHHHHcCChHHHHHHHHHHHHhhCcccccccCCCCCcHHHHHHHHcCCHHHHHHHHHhhcccCCchhhhhhHHHHh
Q 042183           31 DPNLFKAAAAGNLEPFKDMAREEILEICPSLLLQVNAKGDSRSLLVAAKFGHCDIVSVLIERAKLLQHEDEELESGMIRM  110 (179)
Q Consensus        31 ~~~l~~A~~~g~~~~~~~ll~~~~~~~~~~~~~~~~~~g~t~~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~~~~~~~~  110 (179)
                      .+|||.|+..|+.+++++|++      .+..++..+..|.| |||+|+..|+.+++++|++++++++.            
T Consensus        15 ~t~L~~Aa~~g~~~~v~~Ll~------~g~~~~~~~~~~~t-~L~~A~~~g~~~~v~~Ll~~g~~~~~------------   75 (437)
T 1n11_A           15 LTPLHVASFMGHLPIVKNLLQ------RGASPNVSNVKVET-PLHMAARAGHTEVAKYLLQNKAKVNA------------   75 (437)
T ss_dssp             CCHHHHHHHHTCHHHHHHHHH------TTCCSCCSSSCCCC-HHHHHHHHTCHHHHHHHHHHTCCSSC------------
T ss_pred             CCHHHHHHHCCCHHHHHHHHH------cCCCCCCCCCCCCC-HHHHHHHcCCHHHHHHHHhCCCCCCC------------
Confidence            355666666666666655554      33444455555555 55555555555555555555555444            


Q ss_pred             ccCCCCcHHHHHHHcCCHHHHHHHHhcCCCCCCCCCCCCCCHHHHHHHhcCCHHHHHHHHhcCC
Q 042183          111 MNKEKHTALHEAVFHKIVDVVKILTREDLDYPYSANNYNKTPLCMVAEYEHSSHMVVAILKNCT  174 (179)
Q Consensus       111 ~~~~g~t~l~~A~~~g~~~~~~~Ll~~~~~~~~~~~~~g~tpl~~A~~~~~~~~~~~~Ll~~g~  174 (179)
                      ++..|+||||+|+..|+.+++++|++.|++++ ..+..|.||||+|+. .|+.+++++|+++++
T Consensus        76 ~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~-~~~~~g~t~L~~A~~-~g~~~~v~~Ll~~~~  137 (437)
T 1n11_A           76 KAKDDQTPLHCAARIGHTNMVKLLLENNANPN-LATTAGHTPLHIAAR-EGHVETVLALLEKEA  137 (437)
T ss_dssp             CCTTSCCHHHHHHHHTCHHHHHHHHHHTCCTT-CCCTTCCCHHHHHHH-HTCHHHHHHHHHTTC
T ss_pred             CCCCCCCHHHHHHHCCCHHHHHHHHhCCCCCC-CCCCCCCcHHHHHHH-cCCHHHHHHHHhCCC
Confidence            44444444444444444444444444444433 344444444444444 444444444444443

>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A*

Probab=99.92  E-value=1.8e-24  Score=157.24  Aligned_cols=136  Identities=18%  Similarity=0.143  Sum_probs=114.6

Q ss_pred             cccCCHHHHHHHHc---CChHHHHHHHHHHHHhh-----CcccccccCCCCCcHHHHHHHHcCCHHHHHHHHHhhcccCC
Q 042183           27 QLQIDPNLFKAAAA---GNLEPFKDMAREEILEI-----CPSLLLQVNAKGDSRSLLVAAKFGHCDIVSVLIERAKLLQH   98 (179)
Q Consensus        27 ~~~~~~~l~~A~~~---g~~~~~~~ll~~~~~~~-----~~~~~~~~~~~g~t~~L~~A~~~g~~~~v~~ll~~~~~~~~   98 (179)
                      .....++||.|+..   |+.++++.|++......     ........|..|.| |||+|+..|+.+++++|+++|++++.
T Consensus        51 ~~~g~tpL~~A~~~~~~g~~~~v~~Ll~~ga~~~~~~~~i~~~~~~~d~~g~t-pL~~A~~~g~~~~v~~Ll~~ga~~~~  129 (273)
T 2pnn_A           51 PETGKTCLLKAMLNLHNGQNDTIALLLDVARKTDSLKQFVNASYTDSYYKGQT-ALHIAIERRNMTLVTLLVENGADVQA  129 (273)
T ss_dssp             TTTCCCHHHHHHHSCBTTBCHHHHHHHHHHHHTTCHHHHHTCCCCSTTTTTCC-HHHHHHHTTCHHHHHHHHHTTCCTTC
T ss_pred             CcCCCCHHHHHHHHHhcCChHHHHHHHHhhccccchhHHhhcccccccCCCCC-HHHHHHHcCCHHHHHHHHHCCCCcCc
Confidence            34567999999987   99999999998332100     01112235678999 99999999999999999999998877


Q ss_pred             chhhhhhHHHHhccC--------------CCCcHHHHHHHcCCHHHHHHHHh---cCCCCCCCCCCCCCCHHHHHHHhcC
Q 042183           99 EDEELESGMIRMMNK--------------EKHTALHEAVFHKIVDVVKILTR---EDLDYPYSANNYNKTPLCMVAEYEH  161 (179)
Q Consensus        99 ~~~~~~~~~~~~~~~--------------~g~t~l~~A~~~g~~~~~~~Ll~---~~~~~~~~~~~~g~tpl~~A~~~~~  161 (179)
                                  ++.              .|.||||+|+..|+.+++++|++   .|++++ .+|..|.||||+|+. .|
T Consensus       130 ------------~~~~~~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~gad~~-~~d~~g~tpLh~A~~-~~  195 (273)
T 2pnn_A          130 ------------AANGDFFKKTKGRPGFYFGELPLSLAACTNQLAIVKFLLQNSWQPADIS-ARDSVGNTVLHALVE-VA  195 (273)
T ss_dssp             ------------CBCSGGGSSCSSSCCCCSCBSHHHHHHHTTCHHHHHHHHHCSSCCCCTT-CCCTTSCCHHHHHHH-HC
T ss_pred             ------------cccccccccccccccccCCCCHHHHHHHcCCHHHHHHHHhcccCCCCce-eeCCCCCcHHHHHHH-cc
Confidence                        655              79999999999999999999999   899987 899999999999999 88


Q ss_pred             C---------HHHHHHHHhcCCCCC
Q 042183          162 S---------SHMVVAILKNCTSVS  177 (179)
Q Consensus       162 ~---------~~~~~~Ll~~g~~~~  177 (179)
                      +         .+++++|+++|++++
T Consensus       196 ~~~~~~~~~~~~~v~~Ll~~ga~~n  220 (273)
T 2pnn_A          196 DNTVDNTKFVTSMYNEILILGAKLH  220 (273)
T ss_dssp             CSCHHHHHHHHHHHHHHHHHHHHHC
T ss_pred             CcchhHHHHHHHHHHHHHHhhhhcc
Confidence            8         899999999997764

>4hbd_A KN motif and ankyrin repeat domain-containing Pro; structural genomics consortium, SGC, protein binding; 1.72A {Homo sapiens}

Probab=99.92  E-value=2.4e-24  Score=157.21  Aligned_cols=91  Identities=19%  Similarity=0.283  Sum_probs=78.0

Q ss_pred             cCCHHHHHHHHcCChHHHHHHHHHHHHhhCcccccccCCCCCcHHHHHHHHcCCHHHHHHHHH-hhcccCCchhhhhhHH
Q 042183           29 QIDPNLFKAAAAGNLEPFKDMAREEILEICPSLLLQVNAKGDSRSLLVAAKFGHCDIVSVLIE-RAKLLQHEDEELESGM  107 (179)
Q Consensus        29 ~~~~~l~~A~~~g~~~~~~~ll~~~~~~~~~~~~~~~~~~g~t~~L~~A~~~g~~~~v~~ll~-~~~~~~~~~~~~~~~~  107 (179)
                      ...+|||.|+..|+.++++.|++      .+..++.+|..|.| |||+|+..|+.+++++|++ .|++++.         
T Consensus       182 ~g~tpLh~A~~~g~~~~v~~Ll~------~gad~n~~d~~G~T-pLh~A~~~g~~~iv~~Ll~~~gad~~~---------  245 (276)
T 4hbd_A          182 AGQTALMLAVSHGRVDVVKALLA------CEADVNVQDDDGST-ALMCACEHGHKEIAGLLLAVPSCDISL---------  245 (276)
T ss_dssp             TCCCHHHHHHHTTCHHHHHHHHH------TTCCTTCCCTTSCC-HHHHHHHHTCHHHHHHHHTSTTCCTTC---------
T ss_pred             CCCCHHHHHHHcCCHHHHHHHHh------CCCCCCCCCCCCCC-HHHHHHHCCCHHHHHHHHhcCCCCCcC---------
Confidence            35688999999999999988887      67778888889999 9999999999999999998 7887776         


Q ss_pred             HHhccCCCCcHHHHHHHcCCHHHHHHHHhcC
Q 042183          108 IRMMNKEKHTALHEAVFHKIVDVVKILTRED  138 (179)
Q Consensus       108 ~~~~~~~g~t~l~~A~~~g~~~~~~~Ll~~~  138 (179)
                         +|..|+||||+|+..|+.+++++|+++.
T Consensus       246 ---~d~~g~TpL~~A~~~g~~~iv~~Ll~~~  273 (276)
T 4hbd_A          246 ---TDRDGSTALMVALDAGQSEIASMLYSRM  273 (276)
T ss_dssp             ---CCTTSCCHHHHHHHHTCHHHHHHHHHHC
T ss_pred             ---cCCCCCCHHHHHHHcCCHHHHHHHHhcc
Confidence               8888999999999999999999988764

>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A 4dx1_A 4dx2_A*

Probab=99.92  E-value=1.1e-24  Score=157.25  Aligned_cols=134  Identities=18%  Similarity=0.136  Sum_probs=114.3

Q ss_pred             ccCCHHHHHHH---HcCChHHHHHHHHHHHHhh-----CcccccccCCCCCcHHHHHHHHcCCHHHHHHHHHhhcccCCc
Q 042183           28 LQIDPNLFKAA---AAGNLEPFKDMAREEILEI-----CPSLLLQVNAKGDSRSLLVAAKFGHCDIVSVLIERAKLLQHE   99 (179)
Q Consensus        28 ~~~~~~l~~A~---~~g~~~~~~~ll~~~~~~~-----~~~~~~~~~~~g~t~~L~~A~~~g~~~~v~~ll~~~~~~~~~   99 (179)
                      ....++||.|+   ..|+.++++.|++......     ....++..|..|.| |||+|+..|+.+++++|+++|++++. 
T Consensus        44 ~~g~t~L~~A~~~~~~g~~~~v~~Ll~~g~~~~~~~~~~~~~~~~~d~~g~t-~L~~A~~~g~~~~v~~Ll~~ga~~~~-  121 (260)
T 3jxi_A           44 STGKTCLPKALLNLSAGRNDTIPILLDIAEKTGNMREFINSPFRDVYYRGQT-ALHIAIERRCKHYVELLVEKGADVHA-  121 (260)
T ss_dssp             TTCCCHHHHHHTSCBTTBCTHHHHHHHHHHHTTCHHHHHTCCBCCSSEESBC-HHHHHHHTTCHHHHHHHHHTTCCTTC-
T ss_pred             CCCCcHHHHHHHHhhcCCHHHHHHHHHhcccccchHhhhcccccccccCCCC-HHHHHHHcCCHHHHHHHHhCCCCcCc-
Confidence            34679999999   7799999999998332100     11234455669999 99999999999999999999998877 


Q ss_pred             hhhhhhHHHHhcc--------------CCCCcHHHHHHHcCCHHHHHHHHh---cCCCCCCCCCCCCCCHHHHHHHhcCC
Q 042183          100 DEELESGMIRMMN--------------KEKHTALHEAVFHKIVDVVKILTR---EDLDYPYSANNYNKTPLCMVAEYEHS  162 (179)
Q Consensus       100 ~~~~~~~~~~~~~--------------~~g~t~l~~A~~~g~~~~~~~Ll~---~~~~~~~~~~~~g~tpl~~A~~~~~~  162 (179)
                                 ++              ..|+||||+|+..|+.+++++|++   .|++++ .+|..|.||||+|+. .++
T Consensus       122 -----------~~~~~~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~ga~~~-~~d~~g~TpLh~A~~-~~~  188 (260)
T 3jxi_A          122 -----------QARGRFFQPKDEGGYFYFGELPLSLAACTNQPHIVHYLTENGHKQADLR-RQDSRGNTVLHALVA-IAD  188 (260)
T ss_dssp             -----------CCEECCCSSSCCCCSCCSCSSHHHHHHHTTCHHHHHHHHHCSSCCCCTT-CCCTTSCCHHHHHHH-HCC
T ss_pred             -----------cccccccCcccccccccCCCCHHHHHHHcCCHHHHHHHHhccccCCCCc-ccCCCCCcHHHHHHH-hcc
Confidence                       66              579999999999999999999999   899987 899999999999998 877


Q ss_pred             ---------HHHHHHHHhcCCCC
Q 042183          163 ---------SHMVVAILKNCTSV  176 (179)
Q Consensus       163 ---------~~~~~~Ll~~g~~~  176 (179)
                               .+++++|+++|+++
T Consensus       189 ~~~~~~~~~~~~v~~Ll~~ga~~  211 (260)
T 3jxi_A          189 NTRENTKFVTKMYDLLLIKCAKL  211 (260)
T ss_dssp             SSHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CchhHHHHHHHHHHHHHHhCccc
Confidence                     79999999999765

>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens}

Probab=99.92  E-value=1.4e-23  Score=149.04  Aligned_cols=127  Identities=17%  Similarity=0.147  Sum_probs=92.2

Q ss_pred             CHHHHHHHHcCChHHHHHHHHHHHHhhCcccccccCCCCCcHHHHHHHHcCCHHHHHHHHHhhcccCCchhhhhhHHHHh
Q 042183           31 DPNLFKAAAAGNLEPFKDMAREEILEICPSLLLQVNAKGDSRSLLVAAKFGHCDIVSVLIERAKLLQHEDEELESGMIRM  110 (179)
Q Consensus        31 ~~~l~~A~~~g~~~~~~~ll~~~~~~~~~~~~~~~~~~g~t~~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~~~~~~~~  110 (179)
                      .++|+.|+..|+.+.++.|++      .+..++..+..|.| |||+|+..|+.+++++|++++.....           .
T Consensus        10 ~~~l~~A~~~g~~~~~~~Ll~------~g~~~~~~~~~g~t-~L~~A~~~~~~~~v~~Ll~~~~~~~~-----------~   71 (240)
T 3eu9_A           10 TWDIVKATQYGIYERCRELVE------AGYDVRQPDKENVT-LLHWAAINNRIDLVKYYISKGAIVDQ-----------L   71 (240)
T ss_dssp             GCCHHHHHHTTCHHHHHHHHH------TTCCTTCCCTTSCC-HHHHHHHTTCHHHHHHHHHTTCCTTC-----------C
T ss_pred             chHHHHHHHcCChHHHHHHHH------cCCCcCCCCCCCCC-HHHHHHHhCCHHHHHHHHHcCCcchh-----------h
Confidence            356888888888888877776      45566777777888 88888888888888888887776554           1


Q ss_pred             ccCCCCcHHHHHHHcCCHHHHHHHHhcCCCCCCCCCCCCCCHHHHHHHhcCCHHHHHHHHhcCCCCC
Q 042183          111 MNKEKHTALHEAVFHKIVDVVKILTREDLDYPYSANNYNKTPLCMVAEYEHSSHMVVAILKNCTSVS  177 (179)
Q Consensus       111 ~~~~g~t~l~~A~~~g~~~~~~~Ll~~~~~~~~~~~~~g~tpl~~A~~~~~~~~~~~~Ll~~g~~~~  177 (179)
                      .+..|.||||+|+..|+.+++++|++.|+++. ..+..|.|||++|+. .|+.+++++|+++|++++
T Consensus        72 ~~~~~~t~L~~A~~~~~~~~v~~Ll~~g~~~~-~~~~~g~t~l~~A~~-~~~~~~~~~Ll~~~~~~~  136 (240)
T 3eu9_A           72 GGDLNSTPLHWATRQGHLSMVVQLMKYGADPS-LIDGEGCSCIHLAAQ-FGHTSIVAYLIAKGQDVD  136 (240)
T ss_dssp             BTTTTBCHHHHHHHHTCHHHHHHHHHTTCCTT-CCCTTSCCHHHHHHH-TTCHHHHHHHHHTTCCTT
T ss_pred             cCCcCCChhHHHHHcCCHHHHHHHHHcCCCCc-ccCCCCCCHHHHHHH-cCHHHHHHHHHhcCCCcc
Confidence            23347777777777777777777777777765 667777777777777 777777777777776654

>3deo_A Signal recognition particle 43 kDa protein; chloroplast SRP system, signal sequence, ankyrin repeat, chromodomain, type I turn; 1.50A {Arabidopsis thaliana} SCOP: b.34.13.2 k.37.1.1 PDB: 3dep_A 1x32_A

Probab=99.91  E-value=7.1e-24  Score=145.76  Aligned_cols=122  Identities=20%  Similarity=0.213  Sum_probs=108.2

Q ss_pred             cCCHHHHHHHHcCChHHHHHHHHHHHHhhCcccccccCCCCCcHHHHHHHHcCCHHHHHHHHHhhcccCCchhhhhhHHH
Q 042183           29 QIDPNLFKAAAAGNLEPFKDMAREEILEICPSLLLQVNAKGDSRSLLVAAKFGHCDIVSVLIERAKLLQHEDEELESGMI  108 (179)
Q Consensus        29 ~~~~~l~~A~~~g~~~~~~~ll~~~~~~~~~~~~~~~~~~g~t~~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~~~~~~  108 (179)
                      ...++||.|+..|+.+.++.|++       +..++.+|..|.| |||+|+..|+.+++++|+++|++++.          
T Consensus        43 ~g~t~L~~A~~~g~~~~v~~Ll~-------~~~~~~~d~~g~t-~L~~A~~~~~~~~v~~Ll~~ga~~~~----------  104 (183)
T 3deo_A           43 EYETPWWTAARKADEQALSQLLE-------DRDVDAVDENGRT-ALLFVAGLGSDKCVRLLAEAGADLDH----------  104 (183)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHTT-------TSCTTCCCTTSCC-HHHHHHHHTCHHHHHHHHHTTCCTTC----------
T ss_pred             CCCCHHHHHHHcCCHHHHHHHHh-------cCCCCCcCCCCCC-HHHHHHHcCCHHHHHHHHHcCCCCCc----------
Confidence            34589999999999999988864       4577889999999 99999999999999999999998877          


Q ss_pred             Hhcc-CCCCcHHHHHHHcCCHHHHHHHHhcCCCCCCCCCCCCCCHHHHHHHhc----------------CCHHHHHHHHh
Q 042183          109 RMMN-KEKHTALHEAVFHKIVDVVKILTREDLDYPYSANNYNKTPLCMVAEYE----------------HSSHMVVAILK  171 (179)
Q Consensus       109 ~~~~-~~g~t~l~~A~~~g~~~~~~~Ll~~~~~~~~~~~~~g~tpl~~A~~~~----------------~~~~~~~~Ll~  171 (179)
                        ++ ..|+||||+|+..|+.+++++|++.|++++ .+|..|.||||+|+. .                |+.+++++|.+
T Consensus       105 --~~~~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~-~~d~~g~tpl~~A~~-~~~~~~~~~~l~~a~~~~~~~i~~~L~~  180 (183)
T 3deo_A          105 --RDMRGGLTALHMAAGYVRPEVVEALVELGADIE-VEDERGLTALELARE-ILKTTPKGNPMQFGRRIGLEKVINVLEG  180 (183)
T ss_dssp             --CCSSSSCCHHHHHHHTTCHHHHHHHHHHTCCTT-CCCTTSCCHHHHHHH-HHHTCCCCSHHHHHHHHHHHHHHHHHHT
T ss_pred             --CCCCCCCCHHHHHHhcCcHHHHHHHHHcCCCCc-CCCCCCCCHHHHHHH-hccCcccccHHHHHHHcCHHHHHHHHHH
Confidence              77 889999999999999999999999999986 899999999999987 5                56677777765


Q ss_pred             c
Q 042183          172 N  172 (179)
Q Consensus       172 ~  172 (179)
                      +
T Consensus       181 ~  181 (183)
T 3deo_A          181 Q  181 (183)
T ss_dssp             C
T ss_pred             h
Confidence            4

>3ui2_A Signal recognition particle 43 kDa protein, chlor; ankyrin repeat, chromodomain, aromatic CAGE, signal recognit particle, protein targeting; 3.18A {Arabidopsis thaliana} PDB: 1x3q_A 2hug_A

Probab=99.91  E-value=2.1e-24  Score=154.93  Aligned_cols=123  Identities=20%  Similarity=0.203  Sum_probs=111.4

Q ss_pred             cCCHHHHHHHHcCChHHHHHHHHHHHHhhCcccccccCCCCCcHHHHHHHHcCCHHHHHHHHHhhcccCCchhhhhhHHH
Q 042183           29 QIDPNLFKAAAAGNLEPFKDMAREEILEICPSLLLQVNAKGDSRSLLVAAKFGHCDIVSVLIERAKLLQHEDEELESGMI  108 (179)
Q Consensus        29 ~~~~~l~~A~~~g~~~~~~~ll~~~~~~~~~~~~~~~~~~g~t~~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~~~~~~  108 (179)
                      ...++||.|+..|+.+.++.|++       +..++.+|..|.| |||+|+..|+.+++++|+++|++++.          
T Consensus        44 ~g~t~L~~A~~~g~~~~v~~Ll~-------~~~~~~~d~~g~t-~L~~A~~~g~~~~v~~Ll~~ga~~~~----------  105 (244)
T 3ui2_A           44 EYETPWWTAARKADEQALSQLLE-------DRDVDAVDENGRT-ALLFVAGLGSDKCVRLLAEAGADLDH----------  105 (244)
T ss_dssp             HHHHHHHHHHTTTCHHHHHHTTT-------TCCTTCBCTTSCB-HHHHHHHHTCHHHHHHHHHTTCCTTC----------
T ss_pred             CCCCHHHHHHHcCCHHHHHHHHc-------CCCCCCcCCCCCC-HHHHHHHCCCHHHHHHHHHcCCCCCc----------
Confidence            44689999999999999988864       4577889999999 99999999999999999999998877          


Q ss_pred             Hhcc-CCCCcHHHHHHHcCCHHHHHHHHhcCCCCCCCCCCCCCCHHHHHH----------------HhcCCHHHHHHHHh
Q 042183          109 RMMN-KEKHTALHEAVFHKIVDVVKILTREDLDYPYSANNYNKTPLCMVA----------------EYEHSSHMVVAILK  171 (179)
Q Consensus       109 ~~~~-~~g~t~l~~A~~~g~~~~~~~Ll~~~~~~~~~~~~~g~tpl~~A~----------------~~~~~~~~~~~Ll~  171 (179)
                        ++ ..|+||||+|+..|+.+++++|++.|++++ ..|..|.||||+|+                . .|+.+++++|++
T Consensus       106 --~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~-~~d~~g~t~l~~A~~~~~~~~~~~~l~~a~~-~g~~~iv~~L~~  181 (244)
T 3ui2_A          106 --RDMRGGLTALHMAAGYVRPEVVEALVELGADIE-VEDERGLTALELAREILKTTPKGNPMQFGRR-IGLEKVINVLEG  181 (244)
T ss_dssp             --CCSSSCCCHHHHHHHTTCHHHHHHHHHTTCCTT-CCCTTCCCHHHHHHHHHTTCCCSSHHHHHHH-HHHHHHHHHHHH
T ss_pred             --CCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCC-CCCCCCCcHHHHHHHHHhccCCCCHHHHHHH-cChHHHHHHHHH
Confidence              77 789999999999999999999999999986 89999999999888                5 688999999998


Q ss_pred             cC
Q 042183          172 NC  173 (179)
Q Consensus       172 ~g  173 (179)
                      ++
T Consensus       182 ~~  183 (244)
T 3ui2_A          182 QV  183 (244)
T ss_dssp             HH
T ss_pred             hc
Confidence            64

>4g8k_A 2-5A-dependent ribonuclease; ankyrin-repeat domain, single-stranded RNA, hydrolase; 2.40A {Homo sapiens} PDB: 4g8l_A*

Probab=99.91  E-value=1.4e-23  Score=156.88  Aligned_cols=129  Identities=19%  Similarity=0.208  Sum_probs=91.6

Q ss_pred             CCHHHHHHHHcCChHHHHHHHHH--------------------------------HHHhhCcccccccCCCCCcHHHHHH
Q 042183           30 IDPNLFKAAAAGNLEPFKDMARE--------------------------------EILEICPSLLLQVNAKGDSRSLLVA   77 (179)
Q Consensus        30 ~~~~l~~A~~~g~~~~~~~ll~~--------------------------------~~~~~~~~~~~~~~~~g~t~~L~~A   77 (179)
                      ..+|||.|+..|+.++++.|+++                                .++-..+..++.+|..|.| |||+|
T Consensus       168 g~T~L~~A~~~g~~~~v~~LL~~~gad~n~~d~~g~t~l~~~~~~~~~~~~~~i~~lLl~~gad~n~~d~~g~t-~L~~a  246 (337)
T 4g8k_A          168 GATALMDAAEKGHVEVLKILLDEMGADVNACDNMGRNALIHALLSSDDSDVEAITHLLLDHGADVNVRGERGKT-PLILA  246 (337)
T ss_dssp             SCCHHHHHHHHTCHHHHHHHHHHSCCCTTCCCTTSCCHHHHHHHHSCTTTHHHHHHHHHHTTCCTTCCCGGGCC-HHHHH
T ss_pred             CCcHHHHHHHCCCHHHHHHHHhccCCCcCccCCCCCcHHHHHHHHcCcccHHHHHHHHHHCCCCCCCcCCCCCC-HHHHH
Confidence            45899999999999999999851                                1122234445555666666 66666


Q ss_pred             HHcCCHHHHHHHHHh-hcccCCchhhhhhHHHHhccCCCCcHHHHHHHcCCHHHHHHHHhcCCCCCCCCCCCCCCHHHHH
Q 042183           78 AKFGHCDIVSVLIER-AKLLQHEDEELESGMIRMMNKEKHTALHEAVFHKIVDVVKILTREDLDYPYSANNYNKTPLCMV  156 (179)
Q Consensus        78 ~~~g~~~~v~~ll~~-~~~~~~~~~~~~~~~~~~~~~~g~t~l~~A~~~g~~~~~~~Ll~~~~~~~~~~~~~g~tpl~~A  156 (179)
                      +..|+.+++++|+.. +.+++.            +|..|+||||+|+..|+.+++++|+++|++++      ..+||++|
T Consensus       247 ~~~~~~~~v~~Ll~~~~~~vn~------------~d~~G~TpL~~A~~~g~~~iv~~Ll~~GAd~n------~~~~L~~A  308 (337)
T 4g8k_A          247 VEKKHLGLVQRLLEQEHIEIND------------TDSDGKTALLLAVELKLKKIAELLCKRGASTD------CGDLVMTA  308 (337)
T ss_dssp             HHTTCHHHHHHHHTSTTCCTTC------------BCTTSCBHHHHHHHTTCHHHHHHHHTTSCSST------TCCHHHHH
T ss_pred             HHhhhhHHHHHHHHhcCCcccC------------cCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCC------CCCHHHHH
Confidence            666666666666653 444444            77888888888888888888888888887753      34688888


Q ss_pred             HHhcCCHHHHHHHHhcCCCCCC
Q 042183          157 AEYEHSSHMVVAILKNCTSVSH  178 (179)
Q Consensus       157 ~~~~~~~~~~~~Ll~~g~~~~~  178 (179)
                      +. +|+.+++++|+++|+++++
T Consensus       309 ~~-~~~~~iv~~Ll~~GA~~d~  329 (337)
T 4g8k_A          309 RR-NYDHSLVKVLLSHGAKEDF  329 (337)
T ss_dssp             HH-TTCHHHHHHHHHTTCCC--
T ss_pred             HH-cCCHHHHHHHHHCcCCCCC
Confidence            88 8888888888888888764

>3jue_A Arfgap with coiled-coil, ANK repeat and PH domain containing protein 1; arfgap domain, zinc-binding module, GTPase activ metal-binding, nitration; 2.30A {Homo sapiens} PDB: 3t9k_A 4f1p_A

Probab=99.91  E-value=1.1e-23  Score=159.14  Aligned_cols=122  Identities=15%  Similarity=0.190  Sum_probs=114.6

Q ss_pred             CHHHHHHHHc-CChHHHHHHHHHHHHhhCcccccccC--CCCCcHHHHHHHHcCCHHHHHHHHHhhcccCCchhhhhhHH
Q 042183           31 DPNLFKAAAA-GNLEPFKDMAREEILEICPSLLLQVN--AKGDSRSLLVAAKFGHCDIVSVLIERAKLLQHEDEELESGM  107 (179)
Q Consensus        31 ~~~l~~A~~~-g~~~~~~~ll~~~~~~~~~~~~~~~~--~~g~t~~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~~~~~  107 (179)
                      .++||.|+.. |+++.++.|++      .+..++..+  ..|.| |||+|+..|+.+++++|+++|++++.         
T Consensus       200 ~t~L~~Aa~~~g~~~~v~~LL~------~Gadvn~~~~~~~g~T-pLh~Aa~~g~~~iv~~LL~~Gadvn~---------  263 (368)
T 3jue_A          200 GALLFRASGHPPSLPTMADALA------HGADVNWVNGGQDNAT-PLIQATAANSLLACEFLLQNGANVNQ---------  263 (368)
T ss_dssp             HHHHHHHTSSSCCHHHHHHHHH------TTCCTTCCCTTTTCCC-HHHHHHHTTCHHHHHHHHHTTCCTTC---------
T ss_pred             CcHHHHHHHccCCHHHHHHHHH------cCCCCCccccccCCCC-HHHHHHHCCCHHHHHHHHHcCCCCCC---------
Confidence            4689999999 99999999987      667778777  89999 99999999999999999999998887         


Q ss_pred             HHhccCCCCcHHHHHHHcCCHHHHHHHHhcCCCCCCCCCCCCCCHHHHHHHhcCCHHHHHHHHhcC
Q 042183          108 IRMMNKEKHTALHEAVFHKIVDVVKILTREDLDYPYSANNYNKTPLCMVAEYEHSSHMVVAILKNC  173 (179)
Q Consensus       108 ~~~~~~~g~t~l~~A~~~g~~~~~~~Ll~~~~~~~~~~~~~g~tpl~~A~~~~~~~~~~~~Ll~~g  173 (179)
                         +|..|+||||+|+..|+.+++++|++.|++++ ..|..|.||||+|+. .|+.+++++|+..+
T Consensus       264 ---~d~~G~TpLh~A~~~g~~~~v~~LL~~Gad~~-~~d~~G~TpL~~A~~-~g~~~iv~lLl~~~  324 (368)
T 3jue_A          264 ---ADSAGRGPLHHATILGHTGLACLFLKRGADLG-ARDSEGRDPLTIAME-TANADIVTLLRLAK  324 (368)
T ss_dssp             ---CCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTT-CCCTTSCCHHHHHHH-TTCHHHHHHHHHHH
T ss_pred             ---CCCCCCCHHHHHHHcCcHHHHHHHHHCcCCCC-CcCCCCCCHHHHHHH-CCCHHHHHHHHHcC
Confidence               99999999999999999999999999999986 899999999999999 99999999999876

>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis}

Probab=99.91  E-value=3.3e-24  Score=147.99  Aligned_cols=124  Identities=10%  Similarity=0.081  Sum_probs=111.2

Q ss_pred             cCCHHHHHHHHcCChH----HHHHHHHHHHHhhCcccccccCCCCCcHHHHHHHHcCC------HHHHHHHHHhhcccCC
Q 042183           29 QIDPNLFKAAAAGNLE----PFKDMAREEILEICPSLLLQVNAKGDSRSLLVAAKFGH------CDIVSVLIERAKLLQH   98 (179)
Q Consensus        29 ~~~~~l~~A~~~g~~~----~~~~ll~~~~~~~~~~~~~~~~~~g~t~~L~~A~~~g~------~~~v~~ll~~~~~~~~   98 (179)
                      ...+|||.|+..|+.+    +++.|++      .+..++.+|..|+| |||+|+..|+      .+++++|+++|++++.
T Consensus        37 ~g~T~Lh~A~~~~~~~~~~~iv~~Ll~------~Gadvn~~d~~g~T-pLh~a~~~~~~~~~~~~~iv~~Ll~~Gadin~  109 (186)
T 3t8k_A           37 LKSNILYDVLRNNNDEARYKISMFLIN------KGADIKSRTKEGTT-LFFPLFQGGGNDITGTTELCKIFLEKGADITA  109 (186)
T ss_dssp             HTTTHHHHHTTCSCHHHHHHHHHHHHH------TTCCSSCCCTTCCC-THHHHHHHCTTCHHHHHHHHHHHHHTTCCSSS
T ss_pred             CCCCHHHHHHHcCCcchHHHHHHHHHH------CCCCCCCCCCCCCc-HHHHHHHcCCcchhhHHHHHHHHHHCCCCCCc
Confidence            3578999999999864    7888877      78899999999999 9999999987      5789999999999988


Q ss_pred             chhhhhhHHHHhccCCCC-cHHHHHHHcCC-----HHHHHHHHh-cCCCCCCCCCCCCCCHHHHHHHhcCCHHHHHHHHh
Q 042183           99 EDEELESGMIRMMNKEKH-TALHEAVFHKI-----VDVVKILTR-EDLDYPYSANNYNKTPLCMVAEYEHSSHMVVAILK  171 (179)
Q Consensus        99 ~~~~~~~~~~~~~~~~g~-t~l~~A~~~g~-----~~~~~~Ll~-~~~~~~~~~~~~g~tpl~~A~~~~~~~~~~~~Ll~  171 (179)
                                  +|..|+ ||||+|+..+.     .+++++|++ .|++++ .+|..|.||||+|+. .|+.+++++|.+
T Consensus       110 ------------~d~~g~ttpLh~A~~~~~~~~~~~~iv~~Ll~~~gad~~-~~d~~G~TpL~~A~~-~~~~~~v~~L~~  175 (186)
T 3t8k_A          110 ------------LYKPYKIVVFKNIFNYFVDENEMIPLYKLIFSQSGLQLL-IKDKWGLTALEFVKR-CQKPIALKMMED  175 (186)
T ss_dssp             ------------CBGGGTBCTTGGGGGCCSCHHHHHHHHHHHHTSTTCCTT-CCCTTSCCHHHHHHT-TTCHHHHHHHHH
T ss_pred             ------------cCCCcCchHHHHHHHcCCChhhHHHHHHHHHHhcCCCCc-ccCCCCCCHHHHHHH-cCCHHHHHHHHH
Confidence                        999999 99999999554     569999999 899987 899999999999999 999999999987


Q ss_pred             cC
Q 042183          172 NC  173 (179)
Q Consensus       172 ~g  173 (179)
                      ..
T Consensus       176 ~~  177 (186)
T 3t8k_A          176 YI  177 (186)
T ss_dssp             HH
T ss_pred             HH
Confidence            54

>3c5r_A BARD-1, BRCA1-associated ring domain protein 1; ankyrin repeat, helix, extended loop, four repeat, PR ANK repeat, disease mutation, metal-binding; 2.00A {Homo sapiens} SCOP: k.37.1.1

Probab=99.90  E-value=3.3e-23  Score=135.93  Aligned_cols=100  Identities=23%  Similarity=0.248  Sum_probs=94.7

Q ss_pred             ccCCCCCcHHHHHHHHcCCHHHHHHHHHhhcccCCchhhhhhHHHHhccCCCCcHHHHHHHcCCHHHHHHHHhcCCCCCC
Q 042183           64 QVNAKGDSRSLLVAAKFGHCDIVSVLIERAKLLQHEDEELESGMIRMMNKEKHTALHEAVFHKIVDVVKILTREDLDYPY  143 (179)
Q Consensus        64 ~~~~~g~t~~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~~~~~~~~~~~~g~t~l~~A~~~g~~~~~~~Ll~~~~~~~~  143 (179)
                      .+|..|.| |||+|+..|+.+++++|++.+.+++.            ++..|+||||+|+..|+.+++++|++.|++++ 
T Consensus         5 ~~~~~g~t-~L~~A~~~~~~~~~~~Ll~~g~~~~~------------~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~-   70 (137)
T 3c5r_A            5 FTNHRGET-LLHIASIKGDIPSVEYLLQNGSDPNV------------KDHAGWTPLHEACNHGHLKVVELLLQHKALVN-   70 (137)
T ss_dssp             CCCTTCCC-HHHHHHHHTCHHHHHHHHHTTCCSCC------------CCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTT-
T ss_pred             CcCCCCCC-HHHHHHHcCCHHHHHHHHHcCCCCCc------------CCCCCCCHHHHHHHcCCHHHHHHHHHcCCccc-
Confidence            57889999 99999999999999999999998877            89999999999999999999999999999976 


Q ss_pred             CCCCCCCCHHHHHHHhcCCHHHHHHHHhcCCCCCC
Q 042183          144 SANNYNKTPLCMVAEYEHSSHMVVAILKNCTSVSH  178 (179)
Q Consensus       144 ~~~~~g~tpl~~A~~~~~~~~~~~~Ll~~g~~~~~  178 (179)
                      ..|..|.||||+|+. .|+.+++++|+++|++++.
T Consensus        71 ~~~~~g~t~L~~A~~-~~~~~~v~~Ll~~ga~~~~  104 (137)
T 3c5r_A           71 TTGYQNDSPLHDAAK-NGHVDIVKLLLSYGASRNA  104 (137)
T ss_dssp             CCCGGGCCHHHHHHH-TTCHHHHHHHHHTTCCTTC
T ss_pred             CcCCCCCCHHHHHHH-cCCHHHHHHHHHcCCCCCC
Confidence            889999999999999 9999999999999998764

>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis}

Probab=99.90  E-value=1.9e-24  Score=149.18  Aligned_cols=125  Identities=14%  Similarity=0.071  Sum_probs=109.0

Q ss_pred             HHHHHHHHcCChHHHHHHHHHHHHhhCcccccccC-CCCCcHHHHHHHHcCCH----HHHHHHHHhhcccCCchhhhhhH
Q 042183           32 PNLFKAAAAGNLEPFKDMAREEILEICPSLLLQVN-AKGDSRSLLVAAKFGHC----DIVSVLIERAKLLQHEDEELESG  106 (179)
Q Consensus        32 ~~l~~A~~~g~~~~~~~ll~~~~~~~~~~~~~~~~-~~g~t~~L~~A~~~g~~----~~v~~ll~~~~~~~~~~~~~~~~  106 (179)
                      ++|+.|++.|+.+.++.++.     ..   ++..+ ..|.| |||+|+.+|+.    +++++|+++|++++.        
T Consensus         8 ~~l~~Aa~~g~~~~~~~l~~-----~~---~~~~~~~~g~T-~Lh~A~~~~~~~~~~~iv~~Ll~~Gadvn~--------   70 (186)
T 3t8k_A            8 RTVSAAAMLGTYEDFLELFE-----KG---YEDKESVLKSN-ILYDVLRNNNDEARYKISMFLINKGADIKS--------   70 (186)
T ss_dssp             SSHHHHHHHSCHHHHHHHHH-----HS---SSCHHHHHTTT-HHHHHTTCSCHHHHHHHHHHHHHTTCCSSC--------
T ss_pred             cHHHHHHHcCCHHHHHHHHh-----cC---cccccccCCCC-HHHHHHHcCCcchHHHHHHHHHHCCCCCCC--------
Confidence            45999999999999988876     22   24445 77999 99999999975    599999999999988        


Q ss_pred             HHHhccCCCCcHHHHHHHcCC------HHHHHHHHhcCCCCCCCCCCCCC-CHHHHHHHhcCC-----HHHHHHHHh-cC
Q 042183          107 MIRMMNKEKHTALHEAVFHKI------VDVVKILTREDLDYPYSANNYNK-TPLCMVAEYEHS-----SHMVVAILK-NC  173 (179)
Q Consensus       107 ~~~~~~~~g~t~l~~A~~~g~------~~~~~~Ll~~~~~~~~~~~~~g~-tpl~~A~~~~~~-----~~~~~~Ll~-~g  173 (179)
                          ++..|+||||+|+..|+      .+++++|++.|++++ .+|..|. ||||+|+. .+.     .+++++|++ +|
T Consensus        71 ----~d~~g~TpLh~a~~~~~~~~~~~~~iv~~Ll~~Gadin-~~d~~g~ttpLh~A~~-~~~~~~~~~~iv~~Ll~~~g  144 (186)
T 3t8k_A           71 ----RTKEGTTLFFPLFQGGGNDITGTTELCKIFLEKGADIT-ALYKPYKIVVFKNIFN-YFVDENEMIPLYKLIFSQSG  144 (186)
T ss_dssp             ----CCTTCCCTHHHHHHHCTTCHHHHHHHHHHHHHTTCCSS-SCBGGGTBCTTGGGGG-CCSCHHHHHHHHHHHHTSTT
T ss_pred             ----CCCCCCcHHHHHHHcCCcchhhHHHHHHHHHHCCCCCC-ccCCCcCchHHHHHHH-cCCChhhHHHHHHHHHHhcC
Confidence                99999999999999997      578999999999987 8999999 99999998 765     458999999 99


Q ss_pred             CCCCCC
Q 042183          174 TSVSHR  179 (179)
Q Consensus       174 ~~~~~r  179 (179)
                      ++++.+
T Consensus       145 ad~~~~  150 (186)
T 3t8k_A          145 LQLLIK  150 (186)
T ss_dssp             CCTTCC
T ss_pred             CCCccc
Confidence            998753

>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1

Probab=99.90  E-value=3.5e-23  Score=156.97  Aligned_cols=141  Identities=13%  Similarity=0.157  Sum_probs=81.1

Q ss_pred             cCCHHHHHHHHcCChHHHHHHHHHHHHhhCcccccccCCCCCcHHHHHHHHcC---CHHHHHHHHHhhcccCCchh----
Q 042183           29 QIDPNLFKAAAAGNLEPFKDMAREEILEICPSLLLQVNAKGDSRSLLVAAKFG---HCDIVSVLIERAKLLQHEDE----  101 (179)
Q Consensus        29 ~~~~~l~~A~~~g~~~~~~~ll~~~~~~~~~~~~~~~~~~g~t~~L~~A~~~g---~~~~v~~ll~~~~~~~~~~~----  101 (179)
                      ...++||.|+..|+.++++.|++...   .+..++..|..|.| |||+|+..+   +.+++++|+++|++++....    
T Consensus       198 ~g~t~L~~A~~~g~~~~v~~Ll~~~~---~~~~~~~~d~~g~t-~L~~A~~~~~~~~~~~v~~Ll~~g~~~~~~~~~~~~  273 (373)
T 2fo1_E          198 SERSALHQAAANRDFGMMVYMLNSTK---LKGDIEELDRNGMT-ALMIVAHNEGRDQVASAKLLVEKGAKVDYDGAARKD  273 (373)
T ss_dssp             TCCCHHHHHHHTTCHHHHHHHTTSHH---HHHTTSCCCTTSCC-HHHHHHHSCSTTHHHHHHHHHHHTCCSSCCSGGGTS
T ss_pred             CCCCHHHHHHHCCCHHHHHHHHhcCc---cccChhhcCCCCCC-HHHHHHHhCCcchHHHHHHHHHCCCCcccccccccC
Confidence            34466666666666666666665110   11344555555555 566555555   55555555555555442100    


Q ss_pred             -------h----------------h--h-hHHHHhccCCCCcHHHHHHHcCCHHHHHHHHhcCCCCCCCCCCCCCCHHHH
Q 042183          102 -------E----------------L--E-SGMIRMMNKEKHTALHEAVFHKIVDVVKILTREDLDYPYSANNYNKTPLCM  155 (179)
Q Consensus       102 -------~----------------~--~-~~~~~~~~~~g~t~l~~A~~~g~~~~~~~Ll~~~~~~~~~~~~~g~tpl~~  155 (179)
                             +                +  . ...++.+|..|+||||+|+..|+.+++++|++.|++++ ..|..|.|||++
T Consensus       274 ~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~n~~d~~g~TpL~~A~~~g~~~iv~~Ll~~gad~~-~~d~~g~t~l~~  352 (373)
T 2fo1_E          274 SEKYKGRTALHYAAQVSNMPIVKYLVGEKGSNKDKQDEDGKTPIMLAAQEGRIEVVMYLIQQGASVE-AVDATDHTARQL  352 (373)
T ss_dssp             SSSCCCCCTHHHHHSSCCHHHHHHHHHHSCCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCSS-CCCSSSCCHHHH
T ss_pred             cccccCCCHHHHHHHhCCHHHHHHHHHhcCCCccCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCcc-CCCCCCCCHHHH
Confidence                   0                0  0 01222366667777777777777777777777777755 666777777777


Q ss_pred             HHHhcCCHHHHHHHHhcCCC
Q 042183          156 VAEYEHSSHMVVAILKNCTS  175 (179)
Q Consensus       156 A~~~~~~~~~~~~Ll~~g~~  175 (179)
                      |+. +|+.+++++|++++++
T Consensus       353 A~~-~g~~~iv~~Ll~~~a~  371 (373)
T 2fo1_E          353 AQA-NNHHNIVDIFDRCRPE  371 (373)
T ss_dssp             HHH-TTCHHHHHHHHTTC--
T ss_pred             HHH-cCCHHHHHHHHhcCcc
Confidence            777 7777777777776654

>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1

Probab=99.90  E-value=3.4e-23  Score=157.01  Aligned_cols=143  Identities=18%  Similarity=0.161  Sum_probs=119.2

Q ss_pred             cccCCHHHHHHHHcCChHHHHHHHHHHHHhhCcccccccCCCCCcHHHHHHHHcCCHHHHHHHHHhh---cccCCchhh-
Q 042183           27 QLQIDPNLFKAAAAGNLEPFKDMAREEILEICPSLLLQVNAKGDSRSLLVAAKFGHCDIVSVLIERA---KLLQHEDEE-  102 (179)
Q Consensus        27 ~~~~~~~l~~A~~~g~~~~~~~ll~~~~~~~~~~~~~~~~~~g~t~~L~~A~~~g~~~~v~~ll~~~---~~~~~~~~~-  102 (179)
                      .....+|||.|+..|+.++++.|++      .+..++..+..|.| |||+|+..|+.+++++|++++   .+.+..... 
T Consensus       163 d~~g~TpL~~A~~~g~~~iv~~Ll~------~ga~~~~~~~~g~t-~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~d~~g  235 (373)
T 2fo1_E          163 DCDENTPLMLAVLARRRRLVAYLMK------AGADPTIYNKSERS-ALHQAAANRDFGMMVYMLNSTKLKGDIEELDRNG  235 (373)
T ss_dssp             CTTSCCHHHHHHHHTCHHHHHHHHH------TTCCSCCCCTTCCC-HHHHHHHTTCHHHHHHHTTSHHHHHTTSCCCTTS
T ss_pred             CCCCCCHHHHHHHcChHHHHHHHHH------CCCCCcccCCCCCC-HHHHHHHCCCHHHHHHHHhcCccccChhhcCCCC
Confidence            4456799999999999999999998      67788899999999 999999999999999999987   344332111 


Q ss_pred             -----------------------hhhHHHH--------hccCCCCcHHHHHHHcCCHHHHHHHHhcC-CCCCCCCCCCCC
Q 042183          103 -----------------------LESGMIR--------MMNKEKHTALHEAVFHKIVDVVKILTRED-LDYPYSANNYNK  150 (179)
Q Consensus       103 -----------------------~~~~~~~--------~~~~~g~t~l~~A~~~g~~~~~~~Ll~~~-~~~~~~~~~~g~  150 (179)
                                             ..+..++        ..+..|+||||+|+..|+.+++++|++.+ ++++ ..|..|.
T Consensus       236 ~t~L~~A~~~~~~~~~~~v~~Ll~~g~~~~~~~~~~~~~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~n-~~d~~g~  314 (373)
T 2fo1_E          236 MTALMIVAHNEGRDQVASAKLLVEKGAKVDYDGAARKDSEKYKGRTALHYAAQVSNMPIVKYLVGEKGSNKD-KQDEDGK  314 (373)
T ss_dssp             CCHHHHHHHSCSTTHHHHHHHHHHHTCCSSCCSGGGTSSSSCCCCCTHHHHHSSCCHHHHHHHHHHSCCCTT-CCCTTCC
T ss_pred             CCHHHHHHHhCCcchHHHHHHHHHCCCCcccccccccCcccccCCCHHHHHHHhCCHHHHHHHHHhcCCCcc-CcCCCCC
Confidence                                   0000111        14557999999999999999999999886 7766 8999999


Q ss_pred             CHHHHHHHhcCCHHHHHHHHhcCCCCCC
Q 042183          151 TPLCMVAEYEHSSHMVVAILKNCTSVSH  178 (179)
Q Consensus       151 tpl~~A~~~~~~~~~~~~Ll~~g~~~~~  178 (179)
                      ||||+|+. .|+.+++++|+++|++++.
T Consensus       315 TpL~~A~~-~g~~~iv~~Ll~~gad~~~  341 (373)
T 2fo1_E          315 TPIMLAAQ-EGRIEVVMYLIQQGASVEA  341 (373)
T ss_dssp             CHHHHHHH-HTCHHHHHHHHHTTCCSSC
T ss_pred             CHHHHHHH-cCCHHHHHHHHHcCCCccC
Confidence            99999999 9999999999999998864

>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens}

Probab=99.90  E-value=8.8e-23  Score=144.96  Aligned_cols=138  Identities=21%  Similarity=0.270  Sum_probs=93.4

Q ss_pred             CHHHHHHHHcCChHHHHHHHHHHHHhhCcccccccCCCCCcHHHHHHHHcCCHHHHHHHHHhhcccCCchhh--------
Q 042183           31 DPNLFKAAAAGNLEPFKDMAREEILEICPSLLLQVNAKGDSRSLLVAAKFGHCDIVSVLIERAKLLQHEDEE--------  102 (179)
Q Consensus        31 ~~~l~~A~~~g~~~~~~~ll~~~~~~~~~~~~~~~~~~g~t~~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~--------  102 (179)
                      .++||.|+..|+.++++.|++      .+..++..+..|.| |||+|+..|+.+++++|++++.+++.....        
T Consensus        77 ~t~L~~A~~~~~~~~v~~Ll~------~g~~~~~~~~~g~t-~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~g~t~l~~a  149 (240)
T 3eu9_A           77 STPLHWATRQGHLSMVVQLMK------YGADPSLIDGEGCS-CIHLAAQFGHTSIVAYLIAKGQDVDMMDQNGMTPLMWA  149 (240)
T ss_dssp             BCHHHHHHHHTCHHHHHHHHH------TTCCTTCCCTTSCC-HHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHH
T ss_pred             CChhHHHHHcCCHHHHHHHHH------cCCCCcccCCCCCC-HHHHHHHcCHHHHHHHHHhcCCCccccCCCCCcHHHHH
Confidence            356666666666666666655      45566677777888 888888888888888888877766542211        


Q ss_pred             --------------hhhHHHHhccC-CCCcHHHHHHHcCCHHHHHHHHhcCCCCCCCCCCCCCCHHHHHHHhcCCHHHHH
Q 042183          103 --------------LESGMIRMMNK-EKHTALHEAVFHKIVDVVKILTREDLDYPYSANNYNKTPLCMVAEYEHSSHMVV  167 (179)
Q Consensus       103 --------------~~~~~~~~~~~-~g~t~l~~A~~~g~~~~~~~Ll~~~~~~~~~~~~~g~tpl~~A~~~~~~~~~~~  167 (179)
                                    ..+..++..+. .|.||||+|+..|+.+++++|++.|+++. ..+..|.|||++|+. .|+.++++
T Consensus       150 ~~~~~~~~~~~~L~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~-~~~~~g~t~l~~A~~-~~~~~~v~  227 (240)
T 3eu9_A          150 AYRTHSVDPTRLLLTFNVSVNLGDKYHKNTALHWAVLAGNTTVISLLLEAGANVD-AQNIKGESALDLAKQ-RKNVWMIN  227 (240)
T ss_dssp             HHHCCSSTTHHHHHHTTCCTTCCCTTTCCCHHHHHHHHTCHHHHHHHHHHTCCTT-CBCTTSCBHHHHHHH-TTCHHHHH
T ss_pred             HHhCChHHHHHHHHhcCCCcchhhccCCCcHHHHHHHcCCHHHHHHHHHcCCCCC-CcCCCCCCHHHHHHH-cCcHHHHH
Confidence                          11112233443 67788888888888888888888887765 777778888888888 88888888


Q ss_pred             HHHhcCCCCC
Q 042183          168 AILKNCTSVS  177 (179)
Q Consensus       168 ~Ll~~g~~~~  177 (179)
                      +|++++++..
T Consensus       228 ~L~~~~~~~~  237 (240)
T 3eu9_A          228 HLQEARQAKG  237 (240)
T ss_dssp             HHHHHC----
T ss_pred             HHHHhhhccC
Confidence            8888776543

>1d9s_A Cyclin-dependent kinase 4 inhibitor B; helix-turn-helix, ankyrin repeat, signaling protein; NMR {Mus musculus} SCOP: i.11.1.1

Probab=99.90  E-value=1.5e-23  Score=137.53  Aligned_cols=103  Identities=16%  Similarity=0.161  Sum_probs=96.6

Q ss_pred             ccccccCCCCCcHHHHHHHHcCCHHHHHHHHHhhcccCCchhhhhhHHHHhccCCCCcHHHHHHHcCCHHHHHHHHhcCC
Q 042183           60 SLLLQVNAKGDSRSLLVAAKFGHCDIVSVLIERAKLLQHEDEELESGMIRMMNKEKHTALHEAVFHKIVDVVKILTREDL  139 (179)
Q Consensus        60 ~~~~~~~~~g~t~~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~~~~~~~~~~~~g~t~l~~A~~~g~~~~~~~Ll~~~~  139 (179)
                      ..++..+..|.| |||+|+..|+.+++++|++++.+++.            ++..|+||||+|+. |+.+++++|++.|+
T Consensus         3 ~~~~~~~~~g~t-~L~~A~~~~~~~~v~~Ll~~g~~~~~------------~~~~g~t~L~~A~~-~~~~~v~~Ll~~g~   68 (136)
T 1d9s_A            3 PGIHMLGGSSDA-GLATAAARGQVETVRQLLEAGADPNA------------LNRFGRRPIQVMMM-GSAQVAELLLLHGA   68 (136)
T ss_dssp             CCCSCCCCCCSC-HHHHHHHTTCHHHHHHHHHTTCCTTC------------CCTTCCTTTTTSTT-SCHHHHHHHHHHTC
T ss_pred             CCccCCCCCCcc-HHHHHHHcCCHHHHHHHHHcCCCcCC------------cCCCCCCHHHHHHc-CCHHHHHHHHHCCC
Confidence            456788999999 99999999999999999999998877            89999999999999 99999999999999


Q ss_pred             CCCCCCCCC-CCCHHHHHHHhcCCHHHHHHHHhcCCCCCC
Q 042183          140 DYPYSANNY-NKTPLCMVAEYEHSSHMVVAILKNCTSVSH  178 (179)
Q Consensus       140 ~~~~~~~~~-g~tpl~~A~~~~~~~~~~~~Ll~~g~~~~~  178 (179)
                      +++ ..+.. |.||||+|+. .|+.+++++|+++|++++.
T Consensus        69 ~~~-~~~~~~g~t~L~~A~~-~~~~~~v~~Ll~~ga~~~~  106 (136)
T 1d9s_A           69 EPN-CADPATLTRPVHDAAR-EGFLDTLVVLHRAGARLDV  106 (136)
T ss_dssp             CSS-CCBTTTTBCHHHHHHH-HTCHHHHHHHHHTCCCCCC
T ss_pred             CCC-CcCCCCCCCHHHHHHH-cCCHHHHHHHHHcCCCCCc
Confidence            986 88888 9999999999 9999999999999998864

>3aaa_C Myotrophin, protein V-1; actin capping protein, barbed END capping, inhibition, prote binding, actin capping, actin-binding, cytoskeleton, ANK RE; 2.20A {Homo sapiens} PDB: 1myo_A 2kxp_C 2myo_A

Probab=99.90  E-value=7.9e-23  Score=131.73  Aligned_cols=98  Identities=17%  Similarity=0.170  Sum_probs=90.2

Q ss_pred             CCCCCcHHHHHHHHcCCHHHHHHHHHhhcccCCchhhhhhHHHHhccCCCCcHHHHHHHcCCHHHHHHHHhcCCCCCCCC
Q 042183           66 NAKGDSRSLLVAAKFGHCDIVSVLIERAKLLQHEDEELESGMIRMMNKEKHTALHEAVFHKIVDVVKILTREDLDYPYSA  145 (179)
Q Consensus        66 ~~~g~t~~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~~~~~~~~~~~~g~t~l~~A~~~g~~~~~~~Ll~~~~~~~~~~  145 (179)
                      +..|.+ |||+|+..|+.+++++|++.+.+++.            ++..|+||||+|+..|+.+++++|++.|++++ ..
T Consensus         4 ~~~~~~-~l~~A~~~~~~~~v~~ll~~~~~~~~------------~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~-~~   69 (123)
T 3aaa_C            4 GSMCDK-EFMWALKNGDLDEVKDYVAKGEDVNR------------TLEGGRKPLHYAADCGQLEILEFLLLKGADIN-AP   69 (123)
T ss_dssp             ---CHH-HHHHHHHTTCHHHHHHHHHTTCCTTS------------CCTTSSCHHHHHHHTTCHHHHHHHHTTTCCTT-CC
T ss_pred             ccccch-HHHHHHHcCCHHHHHHHHHcCCCcCc------------cCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCC-cC
Confidence            456788 99999999999999999999988777            89999999999999999999999999999976 89


Q ss_pred             CCCCCCHHHHHHHhcCCHHHHHHHHhcCCCCCC
Q 042183          146 NNYNKTPLCMVAEYEHSSHMVVAILKNCTSVSH  178 (179)
Q Consensus       146 ~~~g~tpl~~A~~~~~~~~~~~~Ll~~g~~~~~  178 (179)
                      |..|.||||+|+. .|+.+++++|+++|++++.
T Consensus        70 d~~g~tpL~~A~~-~~~~~~v~~Ll~~ga~~~~  101 (123)
T 3aaa_C           70 DKHHITPLLSAVY-EGHVSCVKLLLSKGADKTV  101 (123)
T ss_dssp             CTTSCCHHHHHHH-HTCHHHHHHHHHTTCCTTC
T ss_pred             CCCCCCHHHHHHH-cCCHHHHHHHHHcCCCCCC
Confidence            9999999999999 9999999999999998764

>2l6b_A NR1C; ankyrin, consensus, repeat protein, ising model, DE NOV; NMR {Escherichia coli}

Probab=99.89  E-value=1.4e-23  Score=133.74  Aligned_cols=99  Identities=22%  Similarity=0.274  Sum_probs=92.2

Q ss_pred             ccCCCCCcHHHHHHHHcCCHHHHHHHHHhhcccCCchhhhhhHHHHhccCCCCcHHHHHHHcCCHHHHHHHHhcCCCCCC
Q 042183           64 QVNAKGDSRSLLVAAKFGHCDIVSVLIERAKLLQHEDEELESGMIRMMNKEKHTALHEAVFHKIVDVVKILTREDLDYPY  143 (179)
Q Consensus        64 ~~~~~g~t~~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~~~~~~~~~~~~g~t~l~~A~~~g~~~~~~~Ll~~~~~~~~  143 (179)
                      .+|..|.| |||+|+..|+.+++++|++++.+++.            ++..|+||||+|+..|+.+++++|++.|++++ 
T Consensus         4 ~~d~~g~t-~L~~A~~~~~~~~~~~Ll~~g~~~~~------------~d~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~-   69 (115)
T 2l6b_A            4 WGSKDGNT-PLHNAAKNGHAEEVKKLLSKGADVNA------------RSKDGNTPLHLAAKNGHAEIVKLLLAKGADVN-   69 (115)
T ss_dssp             CCSCSSCC-HHHHHHHHTCHHHHHHHTTTTCCSSC------------CCSSSCCTTHHHHTTTCHHHHHHHTTTTCCTT-
T ss_pred             ccCCCCCC-HHHHHHHcCCHHHHHHHHHcCCCCCC------------cCCCCCCHHHHHHHcCcHHHHHHHHHcCCCCc-
Confidence            57889999 99999999999999999999988777            88999999999999999999999999999976 


Q ss_pred             CCCCCCCCHHHHHHHhcCCHHHHHHHHhcCCCCC
Q 042183          144 SANNYNKTPLCMVAEYEHSSHMVVAILKNCTSVS  177 (179)
Q Consensus       144 ~~~~~g~tpl~~A~~~~~~~~~~~~Ll~~g~~~~  177 (179)
                      ..|..|.|||++|+. .++.+++++|+++|++++
T Consensus        70 ~~d~~g~tpl~~A~~-~~~~~~~~~Ll~~ga~~n  102 (115)
T 2l6b_A           70 ARSKDGNTPEHLAKK-NGHHEIVKLLDAKGADVN  102 (115)
T ss_dssp             CCCTTCCCTTHHHHT-TTCHHHHHHHHTTSSSHH
T ss_pred             ccCCCCCCHHHHHHH-CCCHHHHHHHHHcCCCCC
Confidence            889999999999999 999999999999998864

>2vge_A RELA-associated inhibitor; iaspp, nucleus, apoptosis, repressor, cytoplasm, phosphorylation, P53 binding protein, ANK repeat, SH3 domain; 2.10A {Homo sapiens}

Probab=99.88  E-value=2.6e-22  Score=142.75  Aligned_cols=106  Identities=21%  Similarity=0.213  Sum_probs=96.2

Q ss_pred             CcccccccCCCCCcHHHHHHHHcCCHHHHHHHHHhhcccCCchhhhhhHHHHhccCCCCcHHHHHHHcCCHHHHHHHHhc
Q 042183           58 CPSLLLQVNAKGDSRSLLVAAKFGHCDIVSVLIERAKLLQHEDEELESGMIRMMNKEKHTALHEAVFHKIVDVVKILTRE  137 (179)
Q Consensus        58 ~~~~~~~~~~~g~t~~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~~~~~~~~~~~~g~t~l~~A~~~g~~~~~~~Ll~~  137 (179)
                      .+...+..+..|.| |||+|+..|+.+++++|++.|++++.            ++..|+||||+|+..|+.+++++|++.
T Consensus        10 ~~~~~~~~~~~~~t-~L~~A~~~g~~~~v~~Ll~~g~~~~~------------~d~~g~tpLh~A~~~g~~~~v~~Ll~~   76 (229)
T 2vge_A           10 SPRKARRARLNPLV-LLLDAALTGELEVVQQAVKEMNDPSQ------------PNEEGITALHNAICGANYSIVDFLITA   76 (229)
T ss_dssp             CCCCCCCTTSCHHH-HHHHHHHHTCHHHHHHHHHHSSCTTC------------CCTTSCCHHHHHHHTTCHHHHHHHHHT
T ss_pred             CCccccccccchhH-HHHHHHHcCCHHHHHHHHhcCCCCCC------------CCCCCCCHHHHHHHcCCHHHHHHHHHC
Confidence            34444556667778 99999999999999999999998877            999999999999999999999999999


Q ss_pred             CCCCCCCCCCCCCCHHHHHHHhcCCHHHHHHHHhcCCCCCC
Q 042183          138 DLDYPYSANNYNKTPLCMVAEYEHSSHMVVAILKNCTSVSH  178 (179)
Q Consensus       138 ~~~~~~~~~~~g~tpl~~A~~~~~~~~~~~~Ll~~g~~~~~  178 (179)
                      |++++ ..|..|.||||+|+. .|+.+++++|+++|++++.
T Consensus        77 ga~~n-~~d~~g~tpLh~A~~-~g~~~~v~~Ll~~ga~~~~  115 (229)
T 2vge_A           77 GANVN-SPDSHGWTPLHCAAS-CNDTVICMALVQHGAAIFA  115 (229)
T ss_dssp             TCCTT-CCCTTCCCHHHHHHH-TTCHHHHHHHHTTTCCTTC
T ss_pred             CCCCC-CCCCCCCCHHHHHHH-cCCHHHHHHHHHcCCCccc
Confidence            99987 889999999999999 9999999999999998764

>1n0q_A 3ANK, 3 ankyrin repeats; structural protein; 1.26A {} SCOP: k.37.1.1

Probab=99.88  E-value=5.9e-22  Score=121.59  Aligned_cols=92  Identities=27%  Similarity=0.309  Sum_probs=85.8

Q ss_pred             CCHHHHHHHHcCChHHHHHHHHHHHHhhCcccccccCCCCCcHHHHHHHHcCCHHHHHHHHHhhcccCCchhhhhhHHHH
Q 042183           30 IDPNLFKAAAAGNLEPFKDMAREEILEICPSLLLQVNAKGDSRSLLVAAKFGHCDIVSVLIERAKLLQHEDEELESGMIR  109 (179)
Q Consensus        30 ~~~~l~~A~~~g~~~~~~~ll~~~~~~~~~~~~~~~~~~g~t~~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~~~~~~~  109 (179)
                      ..+|||.|+..|+.++++.|++      .+..++.+|..|.| |||+|+..|+.+++++|+++|++++.           
T Consensus         2 g~t~L~~A~~~~~~~~v~~Ll~------~g~~~n~~d~~g~t-~L~~A~~~~~~~~v~~Ll~~ga~~~~-----------   63 (93)
T 1n0q_A            2 GRTPLHLAARNGHLEVVKLLLE------AGADVNAKDKNGRT-PLHLAARNGHLEVVKLLLEAGADVNA-----------   63 (93)
T ss_dssp             -CCHHHHHHHHTCHHHHHHHHH------TTCCTTCCCTTSCC-HHHHHHHTTCHHHHHHHHHTTCCTTC-----------
T ss_pred             CCcHHHHHHHcCCHHHHHHHHH------cCCCCcccCCCCCC-HHHHHHHcCCHHHHHHHHHcCCCCCc-----------
Confidence            3578999999999999999987      67788999999999 99999999999999999999998887           


Q ss_pred             hccCCCCcHHHHHHHcCCHHHHHHHHhcCCC
Q 042183          110 MMNKEKHTALHEAVFHKIVDVVKILTREDLD  140 (179)
Q Consensus       110 ~~~~~g~t~l~~A~~~g~~~~~~~Ll~~~~~  140 (179)
                       +|..|+||||+|+..|+.+++++|++.|++
T Consensus        64 -~d~~g~t~l~~A~~~~~~~~~~~Ll~~ga~   93 (93)
T 1n0q_A           64 -KDKNGRTPLHLAARNGHLEVVKLLLEAGAY   93 (93)
T ss_dssp             -CCTTSCCHHHHHHHTTCHHHHHHHHHTTCC
T ss_pred             -cCCCCCCHHHHHHHcCCHHHHHHHHHcCCC
Confidence             999999999999999999999999999874

>2jab_A H10-2-G3; HER2, darpin, ankyrin repeat protein, membrane protein, human epidermal growth factor receptor 2, de novo protein; 1.70A {} PDB: 3hg0_D 2xzt_G 2xzd_G 2y0b_G 2v4h_C

Probab=99.88  E-value=4.1e-22  Score=130.61  Aligned_cols=99  Identities=22%  Similarity=0.241  Sum_probs=91.1

Q ss_pred             cCCCCCcHHHHHHHHcCCHHHHHHHHHhhcccCCchhhhhhHHHHhccCCCCcHHHHHHHcCCHHHHHHHHhcCCCCCCC
Q 042183           65 VNAKGDSRSLLVAAKFGHCDIVSVLIERAKLLQHEDEELESGMIRMMNKEKHTALHEAVFHKIVDVVKILTREDLDYPYS  144 (179)
Q Consensus        65 ~~~~g~t~~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~~~~~~~~~~~~g~t~l~~A~~~g~~~~~~~Ll~~~~~~~~~  144 (179)
                      ....+.| |||+|+..|+.+++++|++++.+++.            ++..|+||||+|+..|+.+++++|++.|++++ .
T Consensus        10 ~~~~~~t-~l~~A~~~g~~~~v~~Ll~~g~~~~~------------~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~-~   75 (136)
T 2jab_A           10 HGSDLGK-KLLEAARAGQDDEVRILMANGADVNA------------KDEYGLTPLYLATAHGHLEIVEVLLKNGADVN-A   75 (136)
T ss_dssp             --CHHHH-HHHHHHHHTCHHHHHHHHHTTCCTTC------------CCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTT-C
T ss_pred             ccccccH-HHHHHHHhCCHHHHHHHHHcCCCCCC------------cCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCC-c
Confidence            4456778 99999999999999999999998877            89999999999999999999999999999986 8


Q ss_pred             CCCCCCCHHHHHHHhcCCHHHHHHHHhcCCCCCC
Q 042183          145 ANNYNKTPLCMVAEYEHSSHMVVAILKNCTSVSH  178 (179)
Q Consensus       145 ~~~~g~tpl~~A~~~~~~~~~~~~Ll~~g~~~~~  178 (179)
                      .|..|.||||+|+. .|+.+++++|+++|++++.
T Consensus        76 ~d~~g~t~L~~A~~-~~~~~~v~~Ll~~g~~~~~  108 (136)
T 2jab_A           76 VDAIGFTPLHLAAF-IGHLEIAEVLLKHGADVNA  108 (136)
T ss_dssp             CCTTCCCHHHHHHH-HTCHHHHHHHHHTTCCTTC
T ss_pred             CCCCCCCHHHHHHH-cCCHHHHHHHHHcCCCCcC
Confidence            89999999999999 9999999999999998753

>1n0r_A 4ANK, 4 ankyrin repeats; structural protein; 1.50A {} SCOP: k.37.1.1

Probab=99.87  E-value=3.1e-21  Score=124.12  Aligned_cols=96  Identities=27%  Similarity=0.399  Sum_probs=90.3

Q ss_pred             CCCcHHHHHHHHcCCHHHHHHHHHhhcccCCchhhhhhHHHHhccCCCCcHHHHHHHcCCHHHHHHHHhcCCCCCCCCCC
Q 042183           68 KGDSRSLLVAAKFGHCDIVSVLIERAKLLQHEDEELESGMIRMMNKEKHTALHEAVFHKIVDVVKILTREDLDYPYSANN  147 (179)
Q Consensus        68 ~g~t~~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~~~~~~~~~~~~g~t~l~~A~~~g~~~~~~~Ll~~~~~~~~~~~~  147 (179)
                      +|.| |||+|+..|+.+++++|++++.+++.            .+..|.||||+|+..|+.+++++|++.|+++. ..+.
T Consensus         1 ~g~t-~L~~A~~~~~~~~v~~Ll~~~~~~~~------------~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~-~~~~   66 (126)
T 1n0r_A            1 NGRT-PLHLAARNGHLEVVKLLLEAGADVNA------------KDKNGRTPLHLAARNGHLEVVKLLLEAGADVN-AKDK   66 (126)
T ss_dssp             CCCC-HHHHHHHHTCHHHHHHHHHHTCCTTC------------CCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTT-CCCT
T ss_pred             CCcc-HHHHHHHcCcHHHHHHHHHcCCCCCC------------cCCCCCcHHHHHHHcCcHHHHHHHHHcCCCCc-ccCC
Confidence            4889 99999999999999999999988777            88999999999999999999999999999976 8899


Q ss_pred             CCCCHHHHHHHhcCCHHHHHHHHhcCCCCCC
Q 042183          148 YNKTPLCMVAEYEHSSHMVVAILKNCTSVSH  178 (179)
Q Consensus       148 ~g~tpl~~A~~~~~~~~~~~~Ll~~g~~~~~  178 (179)
                      .|.||||+|+. .|+.+++++|+++|++++.
T Consensus        67 ~g~t~l~~A~~-~~~~~~~~~Ll~~g~~~~~   96 (126)
T 1n0r_A           67 NGRTPLHLAAR-NGHLEVVKLLLEAGADVNA   96 (126)
T ss_dssp             TSCCHHHHHHH-TTCHHHHHHHHHTTCCTTC
T ss_pred             CCCcHHHHHHH-cChHHHHHHHHHcCCCCcc
Confidence            99999999999 9999999999999988754

>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A

Probab=99.87  E-value=8.1e-22  Score=139.21  Aligned_cols=101  Identities=20%  Similarity=0.181  Sum_probs=93.8

Q ss_pred             cccCCCCCcHHHHHHHHcCCHHHHHHHHHhhcccCCchhhhhhHHHHhccCCCCcHHHHHHHcCCHHHHHHHHhc-CCCC
Q 042183           63 LQVNAKGDSRSLLVAAKFGHCDIVSVLIERAKLLQHEDEELESGMIRMMNKEKHTALHEAVFHKIVDVVKILTRE-DLDY  141 (179)
Q Consensus        63 ~~~~~~g~t~~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~~~~~~~~~~~~g~t~l~~A~~~g~~~~~~~Ll~~-~~~~  141 (179)
                      +..+..|.| |||+|+..|+.+++++|++.+.+++.            ++..|+||||+|+..|+.+++++|++. |+++
T Consensus        67 ~~~~~~g~t-~L~~A~~~g~~~~v~~Ll~~g~~~~~------------~~~~g~t~L~~A~~~~~~~~v~~Ll~~~g~~~  133 (222)
T 3ehr_A           67 AEQAESIDN-PLHEAAKRGNLSWLRECLDNRVGVNG------------LDKAGSTALYWACHGGHKDIVEMLFTQPNIEL  133 (222)
T ss_dssp             HHHEEEESC-HHHHHHHHTCHHHHHHHHHTTCCTTC------------CCTTSCCHHHHHHHTTCHHHHHHHTTSTTCCC
T ss_pred             ccccccccc-ccccccccCcHHHHHHHHhCCCCccc------------cCCCCCCHHHHHHHcCCHHHHHHHHcCCCCCc
Confidence            335667899 99999999999999999999998877            899999999999999999999999999 8887


Q ss_pred             CCCCCCCCCCHHHHHHHhcCCHHHHHHHHhcCCCCCC
Q 042183          142 PYSANNYNKTPLCMVAEYEHSSHMVVAILKNCTSVSH  178 (179)
Q Consensus       142 ~~~~~~~g~tpl~~A~~~~~~~~~~~~Ll~~g~~~~~  178 (179)
                      + ..|..|.||||+|+. .|+.+++++|+++|++++.
T Consensus       134 ~-~~d~~g~tpL~~A~~-~~~~~~v~~Ll~~ga~~~~  168 (222)
T 3ehr_A          134 N-QQNKLGDTALHAAAW-KGYADIVQLLLAKGARTDL  168 (222)
T ss_dssp             C-CCCTTSCCHHHHHHH-HTCHHHHHHHHHHTCCSCC
T ss_pred             c-ccCCCCCCHHHHHHH-cCCHHHHHHHHHcCCCCcc
Confidence            6 899999999999999 9999999999999998864

>2zgd_A 3 repeat synthetic ankyrin; ankyrin repeat, hydroxylated, de novo protein; 1.90A {Synthetic} PDB: 2zgg_A 2xen_A

Probab=99.86  E-value=2e-21  Score=122.93  Aligned_cols=94  Identities=21%  Similarity=0.272  Sum_probs=83.7

Q ss_pred             cccccCCCCCcHHHHHHHHcCCHHHHHHHHHhhcccCCchhhhhhHHHHhccCCCCcHHHHHHHcCCHHHHHHHHhcCCC
Q 042183           61 LLLQVNAKGDSRSLLVAAKFGHCDIVSVLIERAKLLQHEDEELESGMIRMMNKEKHTALHEAVFHKIVDVVKILTREDLD  140 (179)
Q Consensus        61 ~~~~~~~~g~t~~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~~~~~~~~~~~~g~t~l~~A~~~g~~~~~~~Ll~~~~~  140 (179)
                      .....+.+|.+ +||+|+..|+.+++++|++++++++.            +|..|+||||+|+..|+.+++++|++.|++
T Consensus        16 ~~~~~~~~g~t-~L~~A~~~g~~~~v~~Ll~~g~~i~~------------~d~~g~tpLh~A~~~~~~~~v~~Ll~~ga~   82 (110)
T 2zgd_A           16 RGSHMGSDLGK-KLLEAARAGQDDEVRILMANGADVAA------------KDKNGSTPLHLAARNGHLEVVKLLLEAGAD   82 (110)
T ss_dssp             ------CCHHH-HHHHHHHHTCHHHHHHHHHTTCCTTC------------CCTTCCCHHHHHHHTTCHHHHHHHHHTTCC
T ss_pred             cccccCCccch-HHHHHHHcCCHHHHHHHHHcCCCCCc------------cCCCCCCHHHHHHHcCCHHHHHHHHHcCCC
Confidence            44567889999 99999999999999999999998877            899999999999999999999999999999


Q ss_pred             CCCCCCCCCCCHHHHHHHhcCCHHHHHHH
Q 042183          141 YPYSANNYNKTPLCMVAEYEHSSHMVVAI  169 (179)
Q Consensus       141 ~~~~~~~~g~tpl~~A~~~~~~~~~~~~L  169 (179)
                      ++ .+|..|.||||+|+. .|+.+++++|
T Consensus        83 ~~-~~d~~g~tpl~~A~~-~~~~~~~~~L  109 (110)
T 2zgd_A           83 VX-AQDKFGKTAFDISID-NGNEDLAEIL  109 (110)
T ss_dssp             TT-CCCTTSCCHHHHHHH-HTCHHHHHHH
T ss_pred             cc-ccccCCCcHHHHHHH-cCCHHHHHHh
Confidence            76 899999999999999 9999999987

>1bi7_B P16INK4A, MTS1, multiple tumor suppressor; cyclin dependent kinase, cyclin dependent kinase inhibitory protein, CDK, cell cycle; 3.40A {Homo sapiens} SCOP: d.211.1.1 PDB: 1a5e_A 1dc2_A 2a5e_A

Probab=99.86  E-value=1.2e-21  Score=131.16  Aligned_cols=100  Identities=16%  Similarity=0.090  Sum_probs=90.6

Q ss_pred             cccCCCCCcHHHHHHHHcCCHHHHHHHHHhhcccCCchhhhhhHHHHhccCCCCcHHHHHHHcCCHHHHHHHHhcCCCCC
Q 042183           63 LQVNAKGDSRSLLVAAKFGHCDIVSVLIERAKLLQHEDEELESGMIRMMNKEKHTALHEAVFHKIVDVVKILTREDLDYP  142 (179)
Q Consensus        63 ~~~~~~g~t~~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~~~~~~~~~~~~g~t~l~~A~~~g~~~~~~~Ll~~~~~~~  142 (179)
                      ...+..|.| |||+|+..|+.+++++|+++|.+++.            ++..|+||||+|+ .|+.+++++|++.|++++
T Consensus         6 ~~~~~~~~t-~L~~A~~~g~~~~v~~Ll~~g~~~~~------------~~~~g~t~L~~A~-~~~~~~v~~Ll~~g~~~~   71 (156)
T 1bi7_B            6 GSSMEPSAD-WLATAAARGRVEEVRALLEAGANPNA------------PNSYGRRPIQVMM-MGSARVAELLLLHGAEPN   71 (156)
T ss_dssp             ----CCSTT-HHHHHHHHTCHHHHHHHHTTTCCTTC------------CCSSSCCTTTSSC-TTCHHHHHHHHTTTCCCC
T ss_pred             cCCCccchH-HHHHHHHcCCHHHHHHHHHcCCCCCC------------CCCCCCCHHHHHH-cCCHHHHHHHHHcCCCCC
Confidence            446778999 99999999999999999999998877            8999999999985 999999999999999987


Q ss_pred             CCCCCCCCC-HHHHHHHhcCCHHHHHHHHhcCCCCCC
Q 042183          143 YSANNYNKT-PLCMVAEYEHSSHMVVAILKNCTSVSH  178 (179)
Q Consensus       143 ~~~~~~g~t-pl~~A~~~~~~~~~~~~Ll~~g~~~~~  178 (179)
                       ..+..|.| |||+|+. .|+.+++++|+++|++++.
T Consensus        72 -~~d~~g~ttpL~~A~~-~~~~~~v~~Ll~~ga~~~~  106 (156)
T 1bi7_B           72 -CADPATLTRPVHDAAR-EGFLDTLVVLHRAGARLDV  106 (156)
T ss_dssp             -CCCTTTCCCHHHHHHH-HTCHHHHHHHHHHTCCSSC
T ss_pred             -CcCCCCCcHHHHHHHH-CCCHHHHHHHHHcCCCCcc
Confidence             89999999 9999999 9999999999999998864

>3deo_A Signal recognition particle 43 kDa protein; chloroplast SRP system, signal sequence, ankyrin repeat, chromodomain, type I turn; 1.50A {Arabidopsis thaliana} SCOP: b.34.13.2 k.37.1.1 PDB: 3dep_A 1x32_A

Probab=99.85  E-value=1.5e-21  Score=134.09  Aligned_cols=98  Identities=18%  Similarity=0.149  Sum_probs=90.3

Q ss_pred             cCCCCCcHHHHHHHHcCCHHHHHHHHHhhcccCCchhhhhhHHHHhccCCCCcHHHHHHHcCCHHHHHHHHhcCCCCCCC
Q 042183           65 VNAKGDSRSLLVAAKFGHCDIVSVLIERAKLLQHEDEELESGMIRMMNKEKHTALHEAVFHKIVDVVKILTREDLDYPYS  144 (179)
Q Consensus        65 ~~~~g~t~~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~~~~~~~~~~~~g~t~l~~A~~~g~~~~~~~Ll~~~~~~~~~  144 (179)
                      .+..|.| |||+|+..|+.+++++|++ +.+++.            ++..|+||||+|+..|+.+++++|++.|++++ .
T Consensus        40 ~~~~g~t-~L~~A~~~g~~~~v~~Ll~-~~~~~~------------~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~-~  104 (183)
T 3deo_A           40 VVSEYET-PWWTAARKADEQALSQLLE-DRDVDA------------VDENGRTALLFVAGLGSDKCVRLLAEAGADLD-H  104 (183)
T ss_dssp             HHHHHHH-HHHHHHHTTCHHHHHHHTT-TSCTTC------------CCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTT-C
T ss_pred             CCCCCCC-HHHHHHHcCCHHHHHHHHh-cCCCCC------------cCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCC-c
Confidence            3557889 9999999999999999999 887776            89999999999999999999999999999987 5


Q ss_pred             CC-CCCCCHHHHHHHhcCCHHHHHHHHhcCCCCCC
Q 042183          145 AN-NYNKTPLCMVAEYEHSSHMVVAILKNCTSVSH  178 (179)
Q Consensus       145 ~~-~~g~tpl~~A~~~~~~~~~~~~Ll~~g~~~~~  178 (179)
                      .+ ..|.||||+|+. .|+.+++++|+++|++++.
T Consensus       105 ~~~~~g~tpL~~A~~-~~~~~~v~~Ll~~ga~~~~  138 (183)
T 3deo_A          105 RDMRGGLTALHMAAG-YVRPEVVEALVELGADIEV  138 (183)
T ss_dssp             CCSSSSCCHHHHHHH-TTCHHHHHHHHHHTCCTTC
T ss_pred             CCCCCCCCHHHHHHh-cCcHHHHHHHHHcCCCCcC
Confidence            66 889999999999 9999999999999998864

>2aja_A Ankyrin repeat family protein; NESG, Q5ZSV0, structural genomics, PSI, protein structure initiative; 2.80A {Legionella pneumophila} SCOP: a.118.24.1

Probab=99.85  E-value=9.5e-23  Score=154.53  Aligned_cols=128  Identities=15%  Similarity=0.088  Sum_probs=101.0

Q ss_pred             CHHHHHHHHcCChHHHHHHHHHHHHhhCcccccccCCCCCcHHHHHHHHcCCHHHHHHHHHhhcccCCchhhhhhHHHHh
Q 042183           31 DPNLFKAAAAGNLEPFKDMAREEILEICPSLLLQVNAKGDSRSLLVAAKFGHCDIVSVLIERAKLLQHEDEELESGMIRM  110 (179)
Q Consensus        31 ~~~l~~A~~~g~~~~~~~ll~~~~~~~~~~~~~~~~~~g~t~~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~~~~~~~~  110 (179)
                      .++||.|++.|+.++++.|++...   ........+..|.| |||+|+.+|+.+++++|+++|++...         .+.
T Consensus        93 ~T~Lh~Aa~~G~~e~v~~Ll~~ga---~~~~~~~~~~~~~t-pL~~Aa~~G~~eiv~~Ll~~gad~~~---------~~i  159 (376)
T 2aja_A           93 EVICFVAAITGCSSALDTLCLLLT---SDEIVKVIQAENYQ-AFRLAAENGHLHVLNRLCELAPTEIM---------AMI  159 (376)
T ss_dssp             HHHHHHHHHHCCHHHHHHHTTC-----CCSSCC--CHHHHH-HHHHHHHTTCHHHHHHHHHSCTTTHH---------HHH
T ss_pred             CCHHHHHHHcCCHHHHHHHHHcCC---cHHHHHHhccCCCC-HHHHHHHcCCHHHHHHHHhCCCCccc---------ccc
Confidence            389999999999999999987111   11112245567888 99999999999999999999863210         111


Q ss_pred             ccCCCCcHHHHHHHcCCHHHHHHHHhcCCCCCCC--CCCCCCCHHHHHH-HhcCCHHHHHHHHhcCC
Q 042183          111 MNKEKHTALHEAVFHKIVDVVKILTREDLDYPYS--ANNYNKTPLCMVA-EYEHSSHMVVAILKNCT  174 (179)
Q Consensus       111 ~~~~g~t~l~~A~~~g~~~~~~~Ll~~~~~~~~~--~~~~g~tpl~~A~-~~~~~~~~~~~Ll~~g~  174 (179)
                      .+.+ +||||+|+..|+.+++++|++.|+++. .  .|..|.||||+|+ . .|+.+++++|+++|+
T Consensus       160 ~~~~-~TpLh~Aa~~G~~eiv~~Ll~~ga~~~-~~~~d~~g~TpL~~Aa~~-~G~~eiv~~Ll~~ga  223 (376)
T 2aja_A          160 QAEN-YHAFRLAAENGHLHVLNRLCELAPTEA-TAMIQAENYYAFRWAAVG-RGHHNVINFLLDCPV  223 (376)
T ss_dssp             SHHH-HHHHHHHHHTTCHHHHHHHHHSCGGGH-HHHHHHHHHHHHHHHHST-TCCHHHHHHHTTSHH
T ss_pred             CCCC-CCHHHHHHHCCCHHHHHHHHHcCCccc-hhccCCCCCCHHHHHHHH-CCCHHHHHHHHhCCC
Confidence            2222 899999999999999999999999864 4  7778999999999 9 999999999998763

>2l6b_A NR1C; ankyrin, consensus, repeat protein, ising model, DE NOV; NMR {Escherichia coli}

Probab=99.85  E-value=1.1e-21  Score=124.91  Aligned_cols=107  Identities=22%  Similarity=0.240  Sum_probs=95.5

Q ss_pred             cccCCHHHHHHHHcCChHHHHHHHHHHHHhhCcccccccCCCCCcHHHHHHHHcCCHHHHHHHHHhhcccCCchhhhhhH
Q 042183           27 QLQIDPNLFKAAAAGNLEPFKDMAREEILEICPSLLLQVNAKGDSRSLLVAAKFGHCDIVSVLIERAKLLQHEDEELESG  106 (179)
Q Consensus        27 ~~~~~~~l~~A~~~g~~~~~~~ll~~~~~~~~~~~~~~~~~~g~t~~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~~~~  106 (179)
                      .....++||.|+..|+.+.++.|++      .+..++..|..|.| |||+|+..|+.+++++|+++|++.+.        
T Consensus         6 d~~g~t~L~~A~~~~~~~~~~~Ll~------~g~~~~~~d~~g~t-~L~~A~~~~~~~~~~~Ll~~g~~~~~--------   70 (115)
T 2l6b_A            6 SKDGNTPLHNAAKNGHAEEVKKLLS------KGADVNARSKDGNT-PLHLAAKNGHAEIVKLLLAKGADVNA--------   70 (115)
T ss_dssp             SCSSCCHHHHHHHHTCHHHHHHHTT------TTCCSSCCCSSSCC-TTHHHHTTTCHHHHHHHTTTTCCTTC--------
T ss_pred             CCCCCCHHHHHHHcCCHHHHHHHHH------cCCCCCCcCCCCCC-HHHHHHHcCcHHHHHHHHHcCCCCcc--------
Confidence            3456789999999999999999987      56678889999999 99999999999999999999998877        


Q ss_pred             HHHhccCCCCcHHHHHHHcCCHHHHHHHHhcCCCCCCCCCCCCCCHH
Q 042183          107 MIRMMNKEKHTALHEAVFHKIVDVVKILTREDLDYPYSANNYNKTPL  153 (179)
Q Consensus       107 ~~~~~~~~g~t~l~~A~~~g~~~~~~~Ll~~~~~~~~~~~~~g~tpl  153 (179)
                          ++..|+||||+|+..|+.+++++|++.|++++ ..+..|.+|-
T Consensus        71 ----~d~~g~tpl~~A~~~~~~~~~~~Ll~~ga~~n-~~~~~~~~~~  112 (115)
T 2l6b_A           71 ----RSKDGNTPEHLAKKNGHHEIVKLLDAKGADVN-ARSWGSSHHH  112 (115)
T ss_dssp             ----CCTTCCCTTHHHHTTTCHHHHHHHHTTSSSHH-HHSCCCC---
T ss_pred             ----cCCCCCCHHHHHHHCCCHHHHHHHHHcCCCCC-cCCccccccc
Confidence                89999999999999999999999999999986 7888888874

>3ui2_A Signal recognition particle 43 kDa protein, chlor; ankyrin repeat, chromodomain, aromatic CAGE, signal recognit particle, protein targeting; 3.18A {Arabidopsis thaliana} PDB: 1x3q_A 2hug_A

Probab=99.84  E-value=3.1e-21  Score=138.35  Aligned_cols=98  Identities=18%  Similarity=0.149  Sum_probs=90.2

Q ss_pred             cCCCCCcHHHHHHHHcCCHHHHHHHHHhhcccCCchhhhhhHHHHhccCCCCcHHHHHHHcCCHHHHHHHHhcCCCCCCC
Q 042183           65 VNAKGDSRSLLVAAKFGHCDIVSVLIERAKLLQHEDEELESGMIRMMNKEKHTALHEAVFHKIVDVVKILTREDLDYPYS  144 (179)
Q Consensus        65 ~~~~g~t~~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~~~~~~~~~~~~g~t~l~~A~~~g~~~~~~~Ll~~~~~~~~~  144 (179)
                      .+..|.| |||+|+..|+.+++++|++ +.+++.            ++..|+||||+|+..|+.+++++|++.|++++ .
T Consensus        41 ~~~~g~t-~L~~A~~~g~~~~v~~Ll~-~~~~~~------------~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~-~  105 (244)
T 3ui2_A           41 VVSEYET-PWWTAARKADEQALSQLLE-DRDVDA------------VDENGRTALLFVAGLGSDKCVRLLAEAGADLD-H  105 (244)
T ss_dssp             HHHHHHH-HHHHHHTTTCHHHHHHTTT-TCCTTC------------BCTTSCBHHHHHHHHTCHHHHHHHHHTTCCTT-C
T ss_pred             cccCCCC-HHHHHHHcCCHHHHHHHHc-CCCCCC------------cCCCCCCHHHHHHHCCCHHHHHHHHHcCCCCC-c
Confidence            3456889 9999999999999999999 887777            99999999999999999999999999999987 5


Q ss_pred             CC-CCCCCHHHHHHHhcCCHHHHHHHHhcCCCCCC
Q 042183          145 AN-NYNKTPLCMVAEYEHSSHMVVAILKNCTSVSH  178 (179)
Q Consensus       145 ~~-~~g~tpl~~A~~~~~~~~~~~~Ll~~g~~~~~  178 (179)
                      .+ ..|.||||+|+. .|+.+++++|+++|++++.
T Consensus       106 ~~~~~g~t~L~~A~~-~g~~~~v~~Ll~~ga~~~~  139 (244)
T 3ui2_A          106 RDMRGGLTALHMAAG-YVRPEVVEALVELGADIEV  139 (244)
T ss_dssp             CCSSSCCCHHHHHHH-TTCHHHHHHHHHTTCCTTC
T ss_pred             CCCCCCCCHHHHHHH-cCCHHHHHHHHHCCCCCCC
Confidence            66 889999999999 9999999999999998864

>1sw6_A Regulatory protein SWI6; transcription regulation, ankyrin repeats, cell-cycle; 2.10A {Saccharomyces cerevisiae} SCOP: d.211.1.1

Probab=99.84  E-value=7.8e-21  Score=141.71  Aligned_cols=127  Identities=16%  Similarity=0.083  Sum_probs=100.0

Q ss_pred             cccCCHHHHHHHHcCC---hHHHHHHHHHHHHhhCcccccccCCCCCcHHHHHHHH----cCCHHHHHHHHHhhc-----
Q 042183           27 QLQIDPNLFKAAAAGN---LEPFKDMAREEILEICPSLLLQVNAKGDSRSLLVAAK----FGHCDIVSVLIERAK-----   94 (179)
Q Consensus        27 ~~~~~~~l~~A~~~g~---~~~~~~ll~~~~~~~~~~~~~~~~~~g~t~~L~~A~~----~g~~~~v~~ll~~~~-----   94 (179)
                      .....+|||.|+..|+   .+.++.|++     .....++.+|..|.| |||+|+.    .|+.+++++|++.+.     
T Consensus       161 d~~g~TpLh~A~~~g~~~~~~~~~~ll~-----~~~~~~~~~d~~g~t-pLh~A~~~~~~~g~~~~v~~Ll~~~~~~~~~  234 (327)
T 1sw6_A          161 DNMGESCLVKAVKSVNNYDSGTFEALLD-----YLYPCLILEDSMNRT-ILHHIIITSGMTGCSAAAKYYLDILMGWIVK  234 (327)
T ss_dssp             CTTCCCHHHHHHHSSHHHHTTCHHHHHH-----HHGGGGGEECTTCCC-HHHHHHHHHTSTTCHHHHHHHHHHHHHHHHH
T ss_pred             CCCCCCHHHHHHHhcccccHHHHHHHHH-----hhhccccCCCCCCCC-HHHHHHHHccccccHHHHHHHHHHHHHHHhc
Confidence            3456699999999998   788888876     222467889999999 9999999    899999999998853     


Q ss_pred             ---------------ccCCchhh-------------hhhHHHHhccCCCCcHHHHHHHcCCHHHHHHHHhcCCCCCCCCC
Q 042183           95 ---------------LLQHEDEE-------------LESGMIRMMNKEKHTALHEAVFHKIVDVVKILTREDLDYPYSAN  146 (179)
Q Consensus        95 ---------------~~~~~~~~-------------~~~~~~~~~~~~g~t~l~~A~~~g~~~~~~~Ll~~~~~~~~~~~  146 (179)
                                     +++.....             +....++.+|..|+||||+|+..|+.+++++|++.|++++ .+|
T Consensus       235 ~~~~~i~~~~~~~g~~~~~~~~~g~t~L~~a~~~~~Ll~~~~n~~d~~G~TpLh~A~~~g~~~~v~~Ll~~Gad~~-~~d  313 (327)
T 1sw6_A          235 KQNRPIQSGTNEKESKPNDKNGERKDSILENLDLKWIIANMLNAQDSNGDTCLNIAARLGNISIVDALLDYGADPF-IAN  313 (327)
T ss_dssp             GGGCCEEEC----------------CHHHHHCSHHHHHHHTTTCCCTTSCCHHHHHHHHCCHHHHHHHHHTTCCTT-CCC
T ss_pred             ccchHHHhhhhcccCCcccccccCCChhHHHHHHHHHHHhCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCc-ccC
Confidence                           22221111             1111366789999999999999999999999999999986 899


Q ss_pred             CCCCCHHHHHHHhcC
Q 042183          147 NYNKTPLCMVAEYEH  161 (179)
Q Consensus       147 ~~g~tpl~~A~~~~~  161 (179)
                      ..|+||||+|+. +|
T Consensus       314 ~~G~TpL~~A~~-~g  327 (327)
T 1sw6_A          314 KSGLRPVDFGAG-LE  327 (327)
T ss_dssp             TTSCCGGGGTCC---
T ss_pred             CCCCCHHHHHHh-cC
Confidence            999999999987 54

>2b0o_E UPLC1; arfgap, structural genomics, structural genomics consortium, SGC, metal binding protein; 2.06A {Homo sapiens}

Probab=99.82  E-value=1.1e-20  Score=139.55  Aligned_cols=109  Identities=19%  Similarity=0.133  Sum_probs=92.5

Q ss_pred             ccCCHHHHHHHHc---CChHHHHHHHHHHHHhhCcccccccCCCCCcHHHHHHHHcCCHHHHHHHHHhhcccCCchhhhh
Q 042183           28 LQIDPNLFKAAAA---GNLEPFKDMAREEILEICPSLLLQVNAKGDSRSLLVAAKFGHCDIVSVLIERAKLLQHEDEELE  104 (179)
Q Consensus        28 ~~~~~~l~~A~~~---g~~~~~~~ll~~~~~~~~~~~~~~~~~~g~t~~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~~  104 (179)
                      ....++||.|+..   |+.++++.|++      .+..++.+|..|.| |||+|+..|+.+++++|+++|++++.      
T Consensus       188 ~~g~t~Lh~A~~~~~~~~~~iv~~Ll~------~gadvn~~d~~G~T-pLh~A~~~g~~~~v~~Ll~~gad~~~------  254 (301)
T 2b0o_E          188 APEELVLHLAVKVANQASLPLVDFIIQ------NGGHLDAKAADGNT-ALHYAALYNQPDCLKLLLKGRALVGT------  254 (301)
T ss_dssp             SCEECHHHHHHHTCCTTTHHHHHHHHH------HSSCTTCCCTTCCC-HHHHHHHTTCHHHHHHHHHTTCCCSC------
T ss_pred             CCCccHHHHHHHhcccCcHHHHHHHHh------cCCCCCCCCCCCCC-HHHHHHHcCCHHHHHHHHHcCCCCCC------
Confidence            3455899999997   89999999988      56788899999999 99999999999999999999998888      


Q ss_pred             hHHHHhccCCCCcHHHHHHHcCCHHHHHHHHhcCCCCCCCCCCCCCCHHHHHHHhcCCH
Q 042183          105 SGMIRMMNKEKHTALHEAVFHKIVDVVKILTREDLDYPYSANNYNKTPLCMVAEYEHSS  163 (179)
Q Consensus       105 ~~~~~~~~~~g~t~l~~A~~~g~~~~~~~Ll~~~~~~~~~~~~~g~tpl~~A~~~~~~~  163 (179)
                            +|..|.||||+|+..|+.+++++|++.|++       .|.||||+|+. .|+.
T Consensus       255 ------~d~~G~TpL~~A~~~~~~~iv~~Ll~~ga~-------~g~tpLh~A~~-~g~~  299 (301)
T 2b0o_E          255 ------VNEAGETALDIARKKHHKECEELLEQAQAG-------TFAFPLHVDYS-WVIS  299 (301)
T ss_dssp             ------CCTTSCCHHHHHHHHTCHHHHHHHHHHHHH-------TTSSCCC---------
T ss_pred             ------cCCCCCCHHHHHHHcCCHHHHHHHHHhcCC-------CCCChhHHHHh-cCCc
Confidence                  999999999999999999999999998765       47899999999 8764

>2aja_A Ankyrin repeat family protein; NESG, Q5ZSV0, structural genomics, PSI, protein structure initiative; 2.80A {Legionella pneumophila} SCOP: a.118.24.1

Probab=99.79  E-value=3.6e-21  Score=145.92  Aligned_cols=120  Identities=16%  Similarity=0.074  Sum_probs=98.0

Q ss_pred             CCHHHHHHHHcCChHHHHHHHHHHHHhhCccc---ccccCCCCCcHHHHHHHHcCCHHHHHHHHHhhcccCCchhhhhhH
Q 042183           30 IDPNLFKAAAAGNLEPFKDMAREEILEICPSL---LLQVNAKGDSRSLLVAAKFGHCDIVSVLIERAKLLQHEDEELESG  106 (179)
Q Consensus        30 ~~~~l~~A~~~g~~~~~~~ll~~~~~~~~~~~---~~~~~~~g~t~~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~~~~  106 (179)
                      ..+|||.|+..|+.+++++|++      .+..   .+..+.+ .| |||+|+..|+.+++++|+++|++.+.        
T Consensus       128 ~~tpL~~Aa~~G~~eiv~~Ll~------~gad~~~~~i~~~~-~T-pLh~Aa~~G~~eiv~~Ll~~ga~~~~--------  191 (376)
T 2aja_A          128 NYQAFRLAAENGHLHVLNRLCE------LAPTEIMAMIQAEN-YH-AFRLAAENGHLHVLNRLCELAPTEAT--------  191 (376)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHH------SCTTTHHHHHSHHH-HH-HHHHHHHTTCHHHHHHHHHSCGGGHH--------
T ss_pred             CCCHHHHHHHcCCHHHHHHHHh------CCCCccccccCCCC-CC-HHHHHHHCCCHHHHHHHHHcCCccch--------
Confidence            4479999999999999999987      3321   1222222 77 99999999999999999999875321        


Q ss_pred             HHHhccCCCCcHHHHHH-HcCCHHHHHHHHhcCCCCCCCCCCCCCCHHHHHHHhcCCHHHHHHHHhcCCCC
Q 042183          107 MIRMMNKEKHTALHEAV-FHKIVDVVKILTREDLDYPYSANNYNKTPLCMVAEYEHSSHMVVAILKNCTSV  176 (179)
Q Consensus       107 ~~~~~~~~g~t~l~~A~-~~g~~~~~~~Ll~~~~~~~~~~~~~g~tpl~~A~~~~~~~~~~~~Ll~~g~~~  176 (179)
                        ...+..|+||||+|+ ..|+.+++++|++.|+        .|.|||++|+. .|+.+++++|+++|+++
T Consensus       192 --~~~d~~g~TpL~~Aa~~~G~~eiv~~Ll~~ga--------~~~taL~~Aa~-~g~~evv~lL~~~ga~~  251 (376)
T 2aja_A          192 --AMIQAENYYAFRWAAVGRGHHNVINFLLDCPV--------MLAYAEIHEFE-YGEKYVNPFIARHVNRL  251 (376)
T ss_dssp             --HHHHHHHHHHHHHHHSTTCCHHHHHHHTTSHH--------HHHHHHHCTTT-TTTTTHHHHHHHHHHHH
T ss_pred             --hccCCCCCCHHHHHHHHCCCHHHHHHHHhCCC--------ccchHHHHHHH-CCCHHHHHHHHhcCccc
Confidence              125667899999999 9999999999998653        37899999999 99999999999988653

>2zgd_A 3 repeat synthetic ankyrin; ankyrin repeat, hydroxylated, de novo protein; 1.90A {Synthetic} PDB: 2zgg_A 2xen_A

Probab=99.78  E-value=1.1e-18  Score=110.29  Aligned_cols=88  Identities=23%  Similarity=0.299  Sum_probs=81.3

Q ss_pred             ccCCHHHHHHHHcCChHHHHHHHHHHHHhhCcccccccCCCCCcHHHHHHHHcCCHHHHHHHHHhhcccCCchhhhhhHH
Q 042183           28 LQIDPNLFKAAAAGNLEPFKDMAREEILEICPSLLLQVNAKGDSRSLLVAAKFGHCDIVSVLIERAKLLQHEDEELESGM  107 (179)
Q Consensus        28 ~~~~~~l~~A~~~g~~~~~~~ll~~~~~~~~~~~~~~~~~~g~t~~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~~~~~  107 (179)
                      ....++||.|+..|+.+.++.|++      .+..++.+|..|.| |||+|+..|+.+++++|+++|++.+.         
T Consensus        22 ~~g~t~L~~A~~~g~~~~v~~Ll~------~g~~i~~~d~~g~t-pLh~A~~~~~~~~v~~Ll~~ga~~~~---------   85 (110)
T 2zgd_A           22 SDLGKKLLEAARAGQDDEVRILMA------NGADVAAKDKNGST-PLHLAARNGHLEVVKLLLEAGADVXA---------   85 (110)
T ss_dssp             CCHHHHHHHHHHHTCHHHHHHHHH------TTCCTTCCCTTCCC-HHHHHHHTTCHHHHHHHHHTTCCTTC---------
T ss_pred             CccchHHHHHHHcCCHHHHHHHHH------cCCCCCccCCCCCC-HHHHHHHcCCHHHHHHHHHcCCCccc---------
Confidence            344588999999999999999987      56788889999999 99999999999999999999998877         


Q ss_pred             HHhccCCCCcHHHHHHHcCCHHHHHHH
Q 042183          108 IRMMNKEKHTALHEAVFHKIVDVVKIL  134 (179)
Q Consensus       108 ~~~~~~~g~t~l~~A~~~g~~~~~~~L  134 (179)
                         ++..|+||||+|+..|+.+++++|
T Consensus        86 ---~d~~g~tpl~~A~~~~~~~~~~~L  109 (110)
T 2zgd_A           86 ---QDKFGKTAFDISIDNGNEDLAEIL  109 (110)
T ss_dssp             ---CCTTSCCHHHHHHHHTCHHHHHHH
T ss_pred             ---cccCCCcHHHHHHHcCCHHHHHHh
Confidence               999999999999999999999987

>3jue_A Arfgap with coiled-coil, ANK repeat and PH domain containing protein 1; arfgap domain, zinc-binding module, GTPase activ metal-binding, nitration; 2.30A {Homo sapiens} PDB: 3t9k_A 4f1p_A

Probab=99.77  E-value=3.9e-18  Score=128.88  Aligned_cols=96  Identities=13%  Similarity=0.131  Sum_probs=89.5

Q ss_pred             CCCcHHHHHHHHc-CCHHHHHHHHHhhcccCCchhhhhhHHHHhcc--CCCCcHHHHHHHcCCHHHHHHHHhcCCCCCCC
Q 042183           68 KGDSRSLLVAAKF-GHCDIVSVLIERAKLLQHEDEELESGMIRMMN--KEKHTALHEAVFHKIVDVVKILTREDLDYPYS  144 (179)
Q Consensus        68 ~g~t~~L~~A~~~-g~~~~v~~ll~~~~~~~~~~~~~~~~~~~~~~--~~g~t~l~~A~~~g~~~~~~~Ll~~~~~~~~~  144 (179)
                      .+.+ +||.|+.. |+.+++++|+++|++++.            .+  ..|.||||+|+..|+.+++++|+++|++++ .
T Consensus       198 ~~~t-~L~~Aa~~~g~~~~v~~LL~~Gadvn~------------~~~~~~g~TpLh~Aa~~g~~~iv~~LL~~Gadvn-~  263 (368)
T 3jue_A          198 HPGA-LLFRASGHPPSLPTMADALAHGADVNW------------VNGGQDNATPLIQATAANSLLACEFLLQNGANVN-Q  263 (368)
T ss_dssp             CHHH-HHHHHTSSSCCHHHHHHHHHTTCCTTC------------CCTTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTT-C
T ss_pred             CCCc-HHHHHHHccCCHHHHHHHHHcCCCCCc------------cccccCCCCHHHHHHHCCCHHHHHHHHHcCCCCC-C
Confidence            4456 99999999 999999999999998877            76  789999999999999999999999999987 8


Q ss_pred             CCCCCCCHHHHHHHhcCCHHHHHHHHhcCCCCCC
Q 042183          145 ANNYNKTPLCMVAEYEHSSHMVVAILKNCTSVSH  178 (179)
Q Consensus       145 ~~~~g~tpl~~A~~~~~~~~~~~~Ll~~g~~~~~  178 (179)
                      .|..|.||||+|+. .|+.+++++|+++|++++.
T Consensus       264 ~d~~G~TpLh~A~~-~g~~~~v~~LL~~Gad~~~  296 (368)
T 3jue_A          264 ADSAGRGPLHHATI-LGHTGLACLFLKRGADLGA  296 (368)
T ss_dssp             CCTTSCCHHHHHHH-HTCHHHHHHHHHTTCCTTC
T ss_pred             CCCCCCCHHHHHHH-cCcHHHHHHHHHCcCCCCC
Confidence            99999999999999 9999999999999998864

>1dcq_A PYK2-associated protein beta; zinc-binding module, ankyrin repeats, metal binding protein; 2.10A {Mus musculus} SCOP: d.211.1.1 g.45.1.1

Probab=99.76  E-value=3.6e-18  Score=124.67  Aligned_cols=95  Identities=16%  Similarity=0.103  Sum_probs=87.9

Q ss_pred             ccCCHHHHHHHHc---CChHHHHHHHHHHHHhhCcccccccCCCCCcHHHHHHHHcCCHHHHHHHHHhhcccCCchhhhh
Q 042183           28 LQIDPNLFKAAAA---GNLEPFKDMAREEILEICPSLLLQVNAKGDSRSLLVAAKFGHCDIVSVLIERAKLLQHEDEELE  104 (179)
Q Consensus        28 ~~~~~~l~~A~~~---g~~~~~~~ll~~~~~~~~~~~~~~~~~~g~t~~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~~  104 (179)
                      ....+|||.|+..   |+.++++.|++      .+..++.+|..|.| |||+|+..|+.+++++|+++|++++.      
T Consensus       167 ~~g~t~Lh~A~~~~~~~~~~~v~~Ll~------~ga~in~~d~~g~T-pLh~A~~~g~~~~v~~Ll~~gad~~~------  233 (278)
T 1dcq_A          167 EPDETALHLAVRSVDRTSLHIVDFLVQ------NSGNLDKQTGKGST-ALHYCCLTDNAECLKLLLRGKASIEI------  233 (278)
T ss_dssp             STTCBHHHHHHHHCCTTTHHHHHHHHH------HCSCTTCCCTTCCC-HHHHHHHTTCHHHHHHHHHTTCCTTC------
T ss_pred             cCCCCcchHHHHhcccchHHHHHHHHH------CCCCccccCCCCCC-HHHHHHHcCCHHHHHHHHHcCCCCCC------
Confidence            3356999999999   89999999988      57788999999999 99999999999999999999998888      


Q ss_pred             hHHHHhccCCCCcHHHHHHHcCCHHHHHHHHhcCCCC
Q 042183          105 SGMIRMMNKEKHTALHEAVFHKIVDVVKILTREDLDY  141 (179)
Q Consensus       105 ~~~~~~~~~~g~t~l~~A~~~g~~~~~~~Ll~~~~~~  141 (179)
                            +|..|.||||+|+..|+.+++++|++.|++.
T Consensus       234 ------~d~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~  264 (278)
T 1dcq_A          234 ------ANESGETPLDIAKRLKHEHCEELLTQALSGR  264 (278)
T ss_dssp             ------CCTTSCCHHHHHHHTTCHHHHHHHHHHHTTC
T ss_pred             ------ccCCCCCHHHHHHHcCCHHHHHHHHHcCCCC
Confidence                  9999999999999999999999999998763

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	179
d1n11a_	408	d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [Ta	6e-06
d1n11a_	408	d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [Ta	4e-04
d2ajaa1	346	a.118.24.1 (A:3-348) Hypothetical protein LPG2416	2e-04
d2fo1e1	277	d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis ele	2e-04
d2fo1e1	277	d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis ele	0.002
d1sw6a_	301	d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker	0.002
d1wdya_	285	d.211.1.1 (A:) RNase L, 2-5a-dependent ribonucleas	0.002
d1oy3d_	255	d.211.1.1 (D:) Transcription factor inhibitor I-ka	0.002
d1k1aa_	228	d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId:	0.003
d1ixva_	229	d.211.1.1 (A:) 26S proteasome non-ATPase regulator	0.003

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]} Length = 408

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 43.0 bits (100), Expect = 6e-06
 Identities = 23/100 (23%), Positives = 38/100 (38%), Gaps = 13/100 (13%)

Query: 74  LLVAAKFGHCDIVSVLIERAKLLQHEDEELESGMIRMMNKEKHTALHEAVFHKIVDVVKI 133
           L VA+  GH  IV  L++R                 + N +  T LH A      +V K 
Sbjct: 4   LHVASFMGHLPIVKNLLQR------------GASPNVSNVKVETPLHMAARAGHTEVAKY 51

Query: 134 LTREDLDYPYSANNYNKTPLCMVAEYEHSSHMVVAILKNC 173
           L +       +    ++TPL   A   H++ + + +  N 
Sbjct: 52  LLQNKAK-VNAKAKDDQTPLHCAARIGHTNMVKLLLENNA 90

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]} Length = 408

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.6 bits (86), Expect = 4e-04
 Identities = 16/69 (23%), Positives = 28/69 (40%), Gaps = 3/69 (4%)

Query: 107 MIRMMNKEKHTALHEAVFHKIVDVVKILTREDLDYPYSANNYNKTPLCMVAEYEHSSHMV 166
            +    K  ++ LH+A      D+V +L +     P   ++   TPL +     + S  V
Sbjct: 322 DVNAKTKLGYSPLHQAAQQGHTDIVTLLLKNGAS-PNEVSSDGTTPLAIAKRLGYIS--V 378

Query: 167 VAILKNCTS 175
             +LK  T 
Sbjct: 379 TDVLKVVTD 387

>d2ajaa1 a.118.24.1 (A:3-348) Hypothetical protein LPG2416 {Legionella pneumophila [TaxId: 446]} Length = 346

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Pseudo ankyrin repeat-like
family: Pseudo ankyrin repeat
domain: Hypothetical protein LPG2416
species: Legionella pneumophila [TaxId: 446]

 Score = 38.7 bits (89), Expect = 2e-04
 Identities = 16/89 (17%), Positives = 29/89 (32%), Gaps = 10/89 (11%)

Query: 74  LLVAAKFGHCDIVSVLIERAKLLQHEDEELESGMIRMMNKEKHTALHEAVFHKIVDVVKI 133
             VAA  G    +  L     LL  ++       ++++  E + A   A  +  + V+  
Sbjct: 94  CFVAAITGCSSALDTLCL---LLTSDEI------VKVIQAENYQAFRLAAENGHLHVLNR 144

Query: 134 LTREDLDYPYS-ANNYNKTPLCMVAEYEH 161
           L         +     N     + AE  H
Sbjct: 145 LCELAPTEIMAMIQAENYHAFRLAAENGH 173

>d2fo1e1 d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis elegans [TaxId: 6239]} Length = 277

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Lin-12
species: Caenorhabditis elegans [TaxId: 6239]

 Score = 38.2 bits (87), Expect = 2e-04
 Identities = 10/67 (14%), Positives = 24/67 (35%), Gaps = 3/67 (4%)

Query: 107 MIRMMNKEKHTALHEAVFHKIVDVVKILTREDLDYPYSANNYNKTPLCMVAEYEHSSHMV 166
                +++  T +  A     ++VV  L ++      + +  + T   +     H +  +
Sbjct: 213 NKDKQDEDGKTPIMLAAQEGRIEVVMYLIQQGAS-VEAVDATDHTARQLAQANNHHN--I 269

Query: 167 VAILKNC 173
           V I   C
Sbjct: 270 VDIFDRC 276

>d2fo1e1 d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis elegans [TaxId: 6239]} Length = 277

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Lin-12
species: Caenorhabditis elegans [TaxId: 6239]

 Score = 35.9 bits (81), Expect = 0.002
 Identities = 13/63 (20%), Positives = 27/63 (42%), Gaps = 12/63 (19%)

Query: 74  LLVAAKFGHCDIVSVLIERAKLLQHEDEELESGMIRMMNKEKHTALHEAVFHKIVDVVKI 133
           +++AA+ G  ++V  LI++               +  ++   HTA   A  +   ++V I
Sbjct: 225 IMLAAQEGRIEVVMYLIQQ------------GASVEAVDATDHTARQLAQANNHHNIVDI 272

Query: 134 LTR 136
             R
Sbjct: 273 FDR 275

>d1sw6a_ d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 301

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Swi6 ankyrin-repeat fragment
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 35.8 bits (81), Expect = 0.002
 Identities = 17/140 (12%), Positives = 37/140 (26%), Gaps = 4/140 (2%)

Query: 14  EEASLLDNNGEISQLQIDPNLFKAAAAGNLEPFKDMAREEILEICPSLLLQVNAKGDSRS 73
                L     +        L        +      A+   L+I    +++   +     
Sbjct: 161 ALLDYLYPCLILEDSMNRTILHHIIITSGMTGCSAAAKY-YLDILMGWIVKKQNRPIQSG 219

Query: 74  LLVAAKFGHCDIVSVLIERAKLLQHEDEELESGMIRMMNKEKHTALHEAVFHKIVDVVKI 133
                   +           + L  +   + + M+   +    T L+ A     + +V  
Sbjct: 220 TNEKESKPNDKNGERKDSILENLDLKW--IIANMLNAQDSNGDTCLNIAARLGNISIVDA 277

Query: 134 LTREDLDYPYSANNYNKTPL 153
           L     D P+ AN     P+
Sbjct: 278 LLDYGAD-PFIANKSGLRPV 296

>d1wdya_ d.211.1.1 (A:) RNase L, 2-5a-dependent ribonuclease {Human (Homo sapiens) [TaxId: 9606]} Length = 285

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: RNase L, 2-5a-dependent ribonuclease
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 35.3 bits (80), Expect = 0.002
 Identities = 18/114 (15%), Positives = 41/114 (35%), Gaps = 26/114 (22%)

Query: 74  LLVAAKFGHCDIVSVLIERA--------------------KLLQHEDEELESGMIR---- 109
           L+ AA+ GH +++ +L++                           + E +   ++     
Sbjct: 152 LMDAAEKGHVEVLKILLDEMGADVNACDNMGRNALIHALLSSDDSDVEAITHLLLDHGAD 211

Query: 110 --MMNKEKHTALHEAVFHKIVDVVKILTREDLDYPYSANNYNKTPLCMVAEYEH 161
             +  +   T L  AV  K + +V+ L  ++       ++  KT L +  E + 
Sbjct: 212 VNVRGERGKTPLILAVEKKHLGLVQRLLEQEHIEINDTDSDGKTALLLAVELKL 265

>d1oy3d_ d.211.1.1 (D:) Transcription factor inhibitor I-kappa-B-beta, IKBB {Mouse (Mus musculus) [TaxId: 10090]} Length = 255

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Transcription factor inhibitor I-kappa-B-beta, IKBB
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 35.5 bits (80), Expect = 0.002
 Identities = 14/56 (25%), Positives = 24/56 (42%), Gaps = 2/56 (3%)

Query: 112 NKEKHTALHEAVFHKIVDVVKILTRE--DLDYPYSANNYNKTPLCMVAEYEHSSHM 165
            ++  TALH AV H+    +  L       +Y    N+  +T L + A    +S +
Sbjct: 6   TEDGDTALHLAVIHQHEPFLDFLLGFSAGHEYLDLQNDLGQTALHLAAILGEASTV 61

>d1k1aa_ d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId: 9606]} Length = 228

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: bcl-3
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 34.8 bits (78), Expect = 0.003
 Identities = 10/59 (16%), Positives = 20/59 (33%), Gaps = 12/59 (20%)

Query: 74  LLVAAKFGHCDIVSVLIERAKLLQHEDEELESGMIRMMNKEKHTALHEAVFHKIVDVVK 132
           L  A+  G   +V  L+                   + N    T L  A   +++D+++
Sbjct: 181 LHSASGRGLLPLVRTLVRS------------GADSSLKNCHNDTPLMVARSRRVIDILR 227

>d1ixva_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 229

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 34.8 bits (78), Expect = 0.003
 Identities = 7/49 (14%), Positives = 13/49 (26%)

Query: 117 TALHEAVFHKIVDVVKILTREDLDYPYSANNYNKTPLCMVAEYEHSSHM 165
             LH+A        V+ L           +   + PL     ++     
Sbjct: 2   YPLHQACMENEFFKVQELLHSKPSLLLQKDQDGRIPLHWSVSFQAHEIT 50

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	179
d1oy3d_	255	Transcription factor inhibitor I-kappa-B-beta, IKB	99.95
d1ixva_	229	26S proteasome non-ATPase regulatory subunit 10, g	99.94
d1ycsb1	130	53BP2 {Human (Homo sapiens) [TaxId: 9606]}	99.94
d1bi7b_	125	Cell cycle inhibitor p16ink4A {Human (Homo sapiens	99.94
d1dcqa1	154	Pyk2-associated protein beta {Mouse (Mus musculus)	99.94
d1myoa_	118	Myotrophin {Rat (Rattus norvegicus) [TaxId: 10116]	99.94
d1ihba_	156	p18ink4C(ink6) {Human (Homo sapiens) [TaxId: 9606]	99.93
d1uoha_	223	26S proteasome non-ATPase regulatory subunit 10, g	99.93
d1oy3d_	255	Transcription factor inhibitor I-kappa-B-beta, IKB	99.93
d1awcb_	153	GA bindinig protein (GABP) beta 1 {Mouse (Mus musc	99.93
d2fo1e1	277	Lin-12 {Caenorhabditis elegans [TaxId: 6239]}	99.93
d1s70b_	291	Myosin phosphatase targeting subunit 1, MYPT1 {Chi	99.93
d1bd8a_	156	Cell cycle inhibitor p19ink4D {Human (Homo sapiens	99.93
d1ot8a_	209	Neurogenic locus notch receptor domain {Fruit fly	99.92
d1k1aa_	228	bcl-3 {Human (Homo sapiens) [TaxId: 9606]}	99.92
d1uoha_	223	26S proteasome non-ATPase regulatory subunit 10, g	99.92
d1myoa_	118	Myotrophin {Rat (Rattus norvegicus) [TaxId: 10116]	99.91
d1ycsb1	130	53BP2 {Human (Homo sapiens) [TaxId: 9606]}	99.9
d1wdya_	285	RNase L, 2-5a-dependent ribonuclease {Human (Homo	99.9
d1iknd_	221	I-kappa-B-alpha {Human (Homo sapiens) [TaxId: 9606	99.88
d1n11a_	408	Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]}	99.87
d1ot8a_	209	Neurogenic locus notch receptor domain {Fruit fly	99.87
d1ixva_	229	26S proteasome non-ATPase regulatory subunit 10, g	99.87
d2ajaa1	346	Hypothetical protein LPG2416 {Legionella pneumophi	99.87
d1n11a_	408	Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]}	99.86
d1iknd_	221	I-kappa-B-alpha {Human (Homo sapiens) [TaxId: 9606	99.86
d1bi7b_	125	Cell cycle inhibitor p16ink4A {Human (Homo sapiens	99.84
d1s70b_	291	Myosin phosphatase targeting subunit 1, MYPT1 {Chi	99.84
d1sw6a_	301	Swi6 ankyrin-repeat fragment {Baker's yeast (Sacch	99.83
d1k1aa_	228	bcl-3 {Human (Homo sapiens) [TaxId: 9606]}	99.83
d1wdya_	285	RNase L, 2-5a-dependent ribonuclease {Human (Homo	99.83
d1dcqa1	154	Pyk2-associated protein beta {Mouse (Mus musculus)	99.81
d2fo1e1	277	Lin-12 {Caenorhabditis elegans [TaxId: 6239]}	99.81
d2ajaa1	346	Hypothetical protein LPG2416 {Legionella pneumophi	99.77
d1awcb_	153	GA bindinig protein (GABP) beta 1 {Mouse (Mus musc	99.77
d1ihba_	156	p18ink4C(ink6) {Human (Homo sapiens) [TaxId: 9606]	99.73
d1bd8a_	156	Cell cycle inhibitor p19ink4D {Human (Homo sapiens	99.68
d1sw6a_	301	Swi6 ankyrin-repeat fragment {Baker's yeast (Sacch	99.68

>d1oy3d_ d.211.1.1 (D:) Transcription factor inhibitor I-kappa-B-beta, IKBB {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Transcription factor inhibitor I-kappa-B-beta, IKBB
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.95  E-value=2.7e-27  Score=168.58  Aligned_cols=145  Identities=21%  Similarity=0.201  Sum_probs=99.7

Q ss_pred             ccCCHHHHHHHHcCChHHHHHHHHHHHHhhCcccccccCCCCCcHHHHHHHHcCCHHHHHHHHHhhcccCCchhh-----
Q 042183           28 LQIDPNLFKAAAAGNLEPFKDMAREEILEICPSLLLQVNAKGDSRSLLVAAKFGHCDIVSVLIERAKLLQHEDEE-----  102 (179)
Q Consensus        28 ~~~~~~l~~A~~~g~~~~~~~ll~~~~~~~~~~~~~~~~~~g~t~~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~-----  102 (179)
                      .+..||||.||+.|+.++++.|++   ....+..++.+|..|.| |||+|+..|+.+++++|+++|++++.....     
T Consensus         7 ~~G~t~Lh~A~~~~~~~~v~~Ll~---~~a~~~~i~~~~~~g~T-pL~~A~~~g~~~iv~~Ll~~ga~i~~~d~~g~tpL   82 (255)
T d1oy3d_           7 EDGDTALHLAVIHQHEPFLDFLLG---FSAGHEYLDLQNDLGQT-ALHLAAILGEASTVEKLYAAGAGVLVAERGGHTAL   82 (255)
T ss_dssp             TTCCCHHHHHHHTTCHHHHHHHHH---HHTTSGGGGCCCTTSCC-HHHHHHHHTCHHHHHHHHHTTCCSSCCCTTSCCHH
T ss_pred             cCCCCHHHHHHHcCCHHHHHHHHH---cCCCcccccCcCCCCCC-ccchHHhhcccccccccccccccccccccccchhh
Confidence            445788999999999999999987   23355567888899999 999999999999999999998876553211     


Q ss_pred             ---------------------------------------------------------------hhhHHHHhccCCCCcHH
Q 042183          103 ---------------------------------------------------------------LESGMIRMMNKEKHTAL  119 (179)
Q Consensus       103 ---------------------------------------------------------------~~~~~~~~~~~~g~t~l  119 (179)
                                                                                     .....++.++..|.|||
T Consensus        83 ~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~in~~d~~g~TpL  162 (255)
T d1oy3d_          83 HLACRVRAHTCACVLLQPRPSHPRDASDTYLTQSQDCTPDTSHAPAAVDSQPNPENEEEPRDEDWRLQLEAENYDGHTPL  162 (255)
T ss_dssp             HHHTTTTCHHHHHHHSSSCCSSCCCC-----------------------------------CCCGGGGTTCCCTTSCCHH
T ss_pred             hhhhccCchHHHHHHHhhccchhcccchhhhhHHhhhcccchHHHHHHHhhcchhHHHHHHhhhcCcccccccccCcccc
Confidence                                                                           11122234555566666


Q ss_pred             HHHHHcCCHHHHHHHHhcCCCCCCCCCCCCCCHHHHHHHhcCCHHHHHHHHhcCCCCC
Q 042183          120 HEAVFHKIVDVVKILTREDLDYPYSANNYNKTPLCMVAEYEHSSHMVVAILKNCTSVS  177 (179)
Q Consensus       120 ~~A~~~g~~~~~~~Ll~~~~~~~~~~~~~g~tpl~~A~~~~~~~~~~~~Ll~~g~~~~  177 (179)
                      |+|+..++.+++++|++.+++.....+..|.||||+|+. .|+.+++++|+++|++++
T Consensus       163 h~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~TpL~~A~~-~~~~~~v~~Ll~~gadin  219 (255)
T d1oy3d_         163 HVAVIHKDAEMVRLLRDAGADLNKPEPTCGRTPLHLAVE-AQAASVLELLLKAGADPT  219 (255)
T ss_dssp             HHHHHTTCHHHHHHHHHHTCCTTCCCTTTCCCHHHHHHH-TTCHHHHHHHHHTTCCTT
T ss_pred             cccccccccccccchhccccccccccccccccccccccc-ccHHHHHHHHHHCCCCCC
Confidence            666666666666666666655543445556666666666 666666666666666554

>d1ixva_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.94  E-value=5.2e-27  Score=164.60  Aligned_cols=142  Identities=18%  Similarity=0.215  Sum_probs=118.5

Q ss_pred             CHHHHHHHHcCChHHHHHHHHHHHHhhCcccccccCCCCCcHHHHHHHHcCCHHHHHHHHHhhcccCCchh---h-----
Q 042183           31 DPNLFKAAAAGNLEPFKDMAREEILEICPSLLLQVNAKGDSRSLLVAAKFGHCDIVSVLIERAKLLQHEDE---E-----  102 (179)
Q Consensus        31 ~~~l~~A~~~g~~~~~~~ll~~~~~~~~~~~~~~~~~~g~t~~L~~A~~~g~~~~v~~ll~~~~~~~~~~~---~-----  102 (179)
                      ++|||.||..|+.+.++.|++     ..+..++.+|.+|.| |||+|+..|+.+++++|+++|++++....   .     
T Consensus         1 n~pLh~A~~~g~~~~v~~Ll~-----~~~~~~~~~d~~G~T-pL~~A~~~g~~~iv~~Ll~~ga~~~~~~~~~~~~~~~~   74 (229)
T d1ixva_           1 NYPLHQACMENEFFKVQELLH-----SKPSLLLQKDQDGRI-PLHWSVSFQAHEITSFLLSKMENVNLDDYPDDSGWTPF   74 (229)
T ss_dssp             CCHHHHHHHHTCHHHHHHHHH-----HCGGGTTCCCTTSCC-HHHHHHHTTCHHHHHHHHTTCTTCCGGGCCCTTSCCHH
T ss_pred             CHhHHHHHHcCCHHHHHHHHH-----cCCCcccccCCCCCC-HHHHHHHcCCccccchhhhhhccccccccccccccccc
Confidence            468999999999999998876     567788999999999 99999999999999999999887653211   0     


Q ss_pred             ---------------------------------------------------hhhHHHHhccCCCCcHHHHHHHcCCHHHH
Q 042183          103 ---------------------------------------------------LESGMIRMMNKEKHTALHEAVFHKIVDVV  131 (179)
Q Consensus       103 ---------------------------------------------------~~~~~~~~~~~~g~t~l~~A~~~g~~~~~  131 (179)
                                                                         ..+.....++..|+||||+|+..|+.+++
T Consensus        75 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~  154 (229)
T d1ixva_          75 HIACSVGNLEVVKSLYDRPLKPDLNKITNQGVTCLHLAVGKKWFEVSQFLIENGASVRIKDKFNQIPLHRAASVGSLKLI  154 (229)
T ss_dssp             HHHHHHTCHHHHHHHHSSSSCCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHHTCHHHH
T ss_pred             cccccccccccccccccccccccccccccccccccccccccchhhhhhhhhhhcccccccCCCCCCccchhhhccccccc
Confidence                                                               11111234667899999999999999999


Q ss_pred             HHHHhcCCCCCCCCCCCCCCHHHHHHHhcCCHHHHHHHHh-cCCCCCCC
Q 042183          132 KILTREDLDYPYSANNYNKTPLCMVAEYEHSSHMVVAILK-NCTSVSHR  179 (179)
Q Consensus       132 ~~Ll~~~~~~~~~~~~~g~tpl~~A~~~~~~~~~~~~Ll~-~g~~~~~r  179 (179)
                      ++|++.+....+..|..|.||||+|+. .|+.+++++|++ .|++++.+
T Consensus       155 ~~Ll~~~~~~in~~d~~g~TpLh~A~~-~~~~~~v~~Ll~~~gad~~~~  202 (229)
T d1ixva_         155 ELLCGLGKSAVNWQDKQGWTPLFHALA-EGHGDAAVLLVEKYGAEYDLV  202 (229)
T ss_dssp             HHHHTTTCCCSCCCCTTSCCHHHHHHH-TTCHHHHHHHHHHHCCCSCCC
T ss_pred             ccccccccccccccccccCCchhhhcc-cccHHHHHHHHHhcCCCCCCc
Confidence            999999754444889999999999999 999999999997 48988653

>d1ycsb1 d.211.1.1 (B:327-456) 53BP2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 53BP2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.94  E-value=7.8e-27  Score=150.73  Aligned_cols=122  Identities=18%  Similarity=0.108  Sum_probs=108.7

Q ss_pred             HHHHHHHHcCChHHHHHHHHHHHHhhCcccccccCCCCCcHHHHHHHHcCCHHHHHHHHHhhcccCCchhhhhhHHHHhc
Q 042183           32 PNLFKAAAAGNLEPFKDMAREEILEICPSLLLQVNAKGDSRSLLVAAKFGHCDIVSVLIERAKLLQHEDEELESGMIRMM  111 (179)
Q Consensus        32 ~~l~~A~~~g~~~~~~~ll~~~~~~~~~~~~~~~~~~g~t~~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~~~~~~~~~  111 (179)
                      +.|+.|+..|+.++++.|++      .+.+++.+|..|+| |||+|+..|+.+++++|++++++.+.            +
T Consensus         3 ~lL~~A~~~G~~~~v~~Ll~------~g~d~n~~d~~g~t-~Lh~A~~~~~~~~~~~ll~~g~~~~~------------~   63 (130)
T d1ycsb1           3 ALLLDSSLEGEFDLVQRIIY------EVDDPSLPNDEGIT-ALHNAVCAGHTEIVKFLVQFGVNVNA------------A   63 (130)
T ss_dssp             HHHHHHHHHTCHHHHHHHTS------TTSSCCCCCTTSCC-HHHHHHHHTCHHHHHHHHHHTCCTTC------------C
T ss_pred             HHHHHHHHcCCHHHHHHHHH------cCCCcccccccccc-cccccccccccccccccccccccccc------------c
Confidence            46899999999999999987      66778999999999 99999999999999999999998877            9


Q ss_pred             cCCCCcHHHHHHHcCCHHHHHHHHhcCCCCCCCCCCCCCCHHHHH--HHhcCCHHHHHHHHhcC
Q 042183          112 NKEKHTALHEAVFHKIVDVVKILTREDLDYPYSANNYNKTPLCMV--AEYEHSSHMVVAILKNC  173 (179)
Q Consensus       112 ~~~g~t~l~~A~~~g~~~~~~~Ll~~~~~~~~~~~~~g~tpl~~A--~~~~~~~~~~~~Ll~~g  173 (179)
                      |.+|+||||+|+.+|+.+++++|+++|++++......+.||++++  +. .|+.+++++|+..+
T Consensus        64 d~~g~tpLh~A~~~g~~~~v~~Ll~~ga~v~~~~~~~~~~~~~~~~a~~-~g~~eiv~~L~~~~  126 (130)
T d1ycsb1          64 DSDGWTPLHCAASCNNVQVCKFLVESGAAVFAMTYSDMQTAADKCEEME-EGYTQCSQFLYGVQ  126 (130)
T ss_dssp             CTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCSSSCCCHHHHCCSSS-TTCCCHHHHHHHHH
T ss_pred             cccCcccccccchhhHHHHHHHHHHcCCCcccccCCCCCCHHHHHHHHH-cChHHHHHHHHhHH
Confidence            999999999999999999999999999998633345688887766  56 78999999998754

>d1bi7b_ d.211.1.1 (B:) Cell cycle inhibitor p16ink4A {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Cell cycle inhibitor p16ink4A
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.94  E-value=3.5e-27  Score=151.38  Aligned_cols=118  Identities=15%  Similarity=0.207  Sum_probs=108.1

Q ss_pred             HHHHHHHHcCChHHHHHHHHHHHHhhCcccccccCCCCCcHHHHHHHHcCCHHHHHHHHHhhcccCCchhhhhhHHHHhc
Q 042183           32 PNLFKAAAAGNLEPFKDMAREEILEICPSLLLQVNAKGDSRSLLVAAKFGHCDIVSVLIERAKLLQHEDEELESGMIRMM  111 (179)
Q Consensus        32 ~~l~~A~~~g~~~~~~~ll~~~~~~~~~~~~~~~~~~g~t~~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~~~~~~~~~  111 (179)
                      ..||.|+..|++++++.|++      .+..++.++..|.| |||+|+ .|+.+++++|+++|++++.            +
T Consensus         5 ~~L~~Aa~~G~~~~v~~Ll~------~gad~n~~~~~g~t-~l~~a~-~g~~~~v~~Ll~~ga~~~~------------~   64 (125)
T d1bi7b_           5 DWLATAAARGRVEEVRALLE------AGANPNAPNSYGRR-PIQVMM-MGSARVAELLLLHGAEPNC------------A   64 (125)
T ss_dssp             THHHHHHHHTCHHHHHHHHT------TTCCTTCCCSSSCC-TTTSSC-TTCHHHHHHHHTTTCCCCC------------C
T ss_pred             hHHHHHHHCCCHHHHHHHHH------cCCccccccccccc-cccccc-ccccccccccccccccccc------------c
Confidence            56999999999999999987      66778899999999 999765 7999999999999998877            7


Q ss_pred             cCCCC-cHHHHHHHcCCHHHHHHHHhcCCCCCCCCCCCCCCHHHHHHHhcCCHHHHHHHHh
Q 042183          112 NKEKH-TALHEAVFHKIVDVVKILTREDLDYPYSANNYNKTPLCMVAEYEHSSHMVVAILK  171 (179)
Q Consensus       112 ~~~g~-t~l~~A~~~g~~~~~~~Ll~~~~~~~~~~~~~g~tpl~~A~~~~~~~~~~~~Ll~  171 (179)
                      +..+. ||||+|+..|+.+++++|++.|++++ .+|..|+||||+|+. +|+.+++++|+.
T Consensus        65 ~~~~~~~~L~~A~~~g~~~~v~~Ll~~ga~~~-~~d~~G~T~l~~A~~-~g~~~~v~~Lls  123 (125)
T d1bi7b_          65 DPATLTRPVHDAAREGFLDTLVVLHRAGARLD-VRDAWGRLPVDLAEE-LGHRDVARYLRA  123 (125)
T ss_dssp             CTTTCCCHHHHHHHHTCHHHHHHHHHHTCCSS-CCCTTCCCHHHHHHH-HTCHHHHHHHSS
T ss_pred             cccccccccccccccccccccccccccccccc-cccCCCCCHHHHHHH-cCCHHHHHHHHh
Confidence            77765 69999999999999999999999986 899999999999999 999999999975

>d1dcqa1 d.211.1.1 (A:369-522) Pyk2-associated protein beta {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Pyk2-associated protein beta
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.94  E-value=5.3e-26  Score=150.65  Aligned_cols=127  Identities=17%  Similarity=0.182  Sum_probs=108.2

Q ss_pred             HHHHHHHcCChHHHHHHHHHHHHhhCcccccccCCCCCcHHHHHHHHc---CCHHHHHHHHHhhcccCCchhhhhhHHHH
Q 042183           33 NLFKAAAAGNLEPFKDMAREEILEICPSLLLQVNAKGDSRSLLVAAKF---GHCDIVSVLIERAKLLQHEDEELESGMIR  109 (179)
Q Consensus        33 ~l~~A~~~g~~~~~~~ll~~~~~~~~~~~~~~~~~~g~t~~L~~A~~~---g~~~~v~~ll~~~~~~~~~~~~~~~~~~~  109 (179)
                      .|+.|++.+++..+..++.++.....+......+..|+| |||+|+..   ++.+++++|+++|++++.           
T Consensus         9 ~L~~Av~~~dl~~l~~~~~~g~d~~~~~~~~~~~~~g~t-~Lh~A~~~~~~~~~~iv~~Ll~~gadin~-----------   76 (154)
T d1dcqa1           9 SLCEAVKTRDIFGLLQAYADGVDLTEKIPLANGHEPDET-ALHLAVRSVDRTSLHIVDFLVQNSGNLDK-----------   76 (154)
T ss_dssp             HHHHHHHTTCHHHHHHHHHTTCCTTSBCCCSSCSSTTCB-HHHHHHHHCCTTTHHHHHHHHHHCSCTTC-----------
T ss_pred             HHHHHHHhCCHHHHHHHHHcCCCcCCCCCcccCCCCCCc-hHHHHHHhcCCCCHHHHHHHHHcCCChhh-----------
Confidence            478899999999998887622111112223334778999 99999975   678999999999998877           


Q ss_pred             hccCCCCcHHHHHHHcCCHHHHHHHHhcCCCCCCCCCCCCCCHHHHHHHhcCCHHHHHHHHhcCC
Q 042183          110 MMNKEKHTALHEAVFHKIVDVVKILTREDLDYPYSANNYNKTPLCMVAEYEHSSHMVVAILKNCT  174 (179)
Q Consensus       110 ~~~~~g~t~l~~A~~~g~~~~~~~Ll~~~~~~~~~~~~~g~tpl~~A~~~~~~~~~~~~Ll~~g~  174 (179)
                       +|..|+||||+|+..|+.+++++|++.|++++ .+|..|.||||+|+. .|+.+++++|++.++
T Consensus        77 -~d~~g~TpLh~A~~~~~~~~v~~Ll~~gad~~-~~d~~g~tpL~~A~~-~~~~~i~~~L~~~~~  138 (154)
T d1dcqa1          77 -QTGKGSTALHYCCLTDNAECLKLLLRGKASIE-IANESGETPLDIAKR-LKHEHCEELLTQALS  138 (154)
T ss_dssp             -CCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTT-CCCTTSCCHHHHHHH-TTCHHHHHHHHHHHT
T ss_pred             -hhhhhccccccccccccccccccccccCcccc-ccCCCCCCHHHHHHH-cCCHHHHHHHHHhCC
Confidence             99999999999999999999999999999986 899999999999999 999999999999764

>d1myoa_ d.211.1.1 (A:) Myotrophin {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myotrophin
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.94  E-value=2.2e-27  Score=150.85  Aligned_cols=108  Identities=23%  Similarity=0.247  Sum_probs=100.9

Q ss_pred             CHHHHHHHHcCChHHHHHHHHHHHHhhCcccccccCCCCCcHHHHHHHHcCCHHHHHHHHHhhcccCCchhhhhhHHHHh
Q 042183           31 DPNLFKAAAAGNLEPFKDMAREEILEICPSLLLQVNAKGDSRSLLVAAKFGHCDIVSVLIERAKLLQHEDEELESGMIRM  110 (179)
Q Consensus        31 ~~~l~~A~~~g~~~~~~~ll~~~~~~~~~~~~~~~~~~g~t~~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~~~~~~~~  110 (179)
                      ++||++|++.|+.+.++.|++      .+..++.++..|.| |||+|+..|+.+++++|+++|++++.            
T Consensus         3 ~tpL~~A~~~g~~~~v~~Ll~------~g~d~n~~~~~g~t-~lh~A~~~~~~~~~~~ll~~g~din~------------   63 (118)
T d1myoa_           3 DKEFMWALKNGDLDEVKDYVA------KGEDVNRTLEGGRK-PLHYAADCGQLEILEFLLLKGADINA------------   63 (118)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHT------TTCCCCCCSSSSCC-TTHHHHHHSTTTHHHHHHHSSCTTTC------------
T ss_pred             ChHHHHHHHCCCHHHHHHHHH------hhhccccccccccc-cccccccccccccccccccccceeee------------
Confidence            579999999999999999987      66778999999999 99999999999999999999998877            


Q ss_pred             ccCCCCcHHHHHHHcCCHHHHHHHHhcCCCCCCCCCCCCCCHHHHHHH
Q 042183          111 MNKEKHTALHEAVFHKIVDVVKILTREDLDYPYSANNYNKTPLCMVAE  158 (179)
Q Consensus       111 ~~~~g~t~l~~A~~~g~~~~~~~Ll~~~~~~~~~~~~~g~tpl~~A~~  158 (179)
                      +|..|+||||+|+..|+.+++++|++.|++++ .+|..|.||||+|..
T Consensus        64 ~d~~g~tpLh~A~~~~~~~~v~~Ll~~Gad~~-~~d~~G~t~l~~a~~  110 (118)
T d1myoa_          64 PDKHHITPLLSAVYEGHVSCVKLLLSKGADKT-VKGPDGLTALEATDN  110 (118)
T ss_dssp             CSSSCSCHHHHHHTTTCCHHHHHHHTTCCCSS-SSSSSTCCCCCTCSS
T ss_pred             cccccccchhhhhhcCchhhhhhhhcccccce-eeCCCCCCHHHHHhH
Confidence            99999999999999999999999999999986 899999999998754

>d1ihba_ d.211.1.1 (A:) p18ink4C(ink6) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: p18ink4C(ink6)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.93  E-value=3.9e-26  Score=151.40  Aligned_cols=133  Identities=20%  Similarity=0.182  Sum_probs=114.2

Q ss_pred             HHHHHHHHcCChHHHHHHHHHHHHhhCcccccccCCCCCcHHHHHHHHcCCHHHHHHHHHhhcccCCchhh---------
Q 042183           32 PNLFKAAAAGNLEPFKDMAREEILEICPSLLLQVNAKGDSRSLLVAAKFGHCDIVSVLIERAKLLQHEDEE---------  102 (179)
Q Consensus        32 ~~l~~A~~~g~~~~~~~ll~~~~~~~~~~~~~~~~~~g~t~~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~---------  102 (179)
                      ++||.|+..|++++|+.|++      .+.+++.+|.+|.| |||+|+ .|+.+++++|++++++++.....         
T Consensus         3 ~~Lh~Aa~~g~~~~v~~Ll~------~g~d~n~~d~~g~T-pL~~A~-~~~~ei~~~Ll~~~a~~~~~~~~~~~~l~~~~   74 (156)
T d1ihba_           3 NELASAAARGDLEQLTSLLQ------NNVNVNAQNGFGRT-ALQVMK-LGNPEIARRLLLRGANPDLKDRTGFAVIHDAA   74 (156)
T ss_dssp             HHHHHHHHHTCHHHHHHHTT------SCCCTTCCCTTSCC-HHHHCC-SSCHHHHHHHHHTTCCTTCCCTTSCCHHHHHH
T ss_pred             HHHHHHHHcCCHHHHHHHHH------CCCCcCccCCcccc-cccccc-cccccccccccccccccccccccCcccccccc
Confidence            67999999999999999987      67788999999999 999886 78999999999999887653222         


Q ss_pred             ------------hhhHHHHhccCCCCcHHHHHHHcCCHHHHHHHHhcCCCCCCCCCCCCCCHHHHHHHhcCCHHHHHHHH
Q 042183          103 ------------LESGMIRMMNKEKHTALHEAVFHKIVDVVKILTREDLDYPYSANNYNKTPLCMVAEYEHSSHMVVAIL  170 (179)
Q Consensus       103 ------------~~~~~~~~~~~~g~t~l~~A~~~g~~~~~~~Ll~~~~~~~~~~~~~g~tpl~~A~~~~~~~~~~~~Ll  170 (179)
                                  .....++..+..|.+|+|.|+..++.+++++|+++++.....+|..|.||||+|+. .++.+++++|+
T Consensus        75 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~~~~~~~~~d~~g~TpL~~A~~-~~~~~iv~~Ll  153 (156)
T d1ihba_          75 RAGFLDTLQTLLEFQADVNIEDNEGNLPLHLAAKEGHLRVVEFLVKHTASNVGHRNHKGDTACDLARL-YGRNEVVSLMQ  153 (156)
T ss_dssp             HHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHSCCCTTCCCTTSCCHHHHHHH-TTCHHHHHHHH
T ss_pred             cccccccccccccccccccccccccccccccccccccccccccccccccccccccCCCCCCHHHHHHH-cCCHHHHHHHH
Confidence                        12223456778899999999999999999999999874445899999999999999 99999999999


Q ss_pred             hcC
Q 042183          171 KNC  173 (179)
Q Consensus       171 ~~g  173 (179)
                      ++|
T Consensus       154 ~~G  156 (156)
T d1ihba_         154 ANG  156 (156)
T ss_dssp             HTC
T ss_pred             hcC
Confidence            987

>d1uoha_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.93  E-value=3.8e-25  Score=154.94  Aligned_cols=134  Identities=19%  Similarity=0.199  Sum_probs=117.9

Q ss_pred             cCCHHHHHHHHcCChHHHHHHHH----------------------------HHHHhhCcccccccCCCCCcHHHHHHHHc
Q 042183           29 QIDPNLFKAAAAGNLEPFKDMAR----------------------------EEILEICPSLLLQVNAKGDSRSLLVAAKF   80 (179)
Q Consensus        29 ~~~~~l~~A~~~g~~~~~~~ll~----------------------------~~~~~~~~~~~~~~~~~g~t~~L~~A~~~   80 (179)
                      ...+|||+|+..|+.++++.++.                            +.+++ .+..++..|..|.| |||+|+.+
T Consensus        36 ~G~TpLh~Aa~~g~~e~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~Ll~-~~~d~~~~d~~g~t-pL~~A~~~  113 (223)
T d1uoha_          36 DSRTALHWACSAGHTEIVEFLLQLGVPVNDKDDAGWSPLHIAASAGRDEIVKALLG-KGAQVNAVNQNGCT-PLHYAASK  113 (223)
T ss_dssp             TSCCHHHHHHHHTCHHHHHHHHHHTCCSCCCCTTCCCHHHHHHHHTCHHHHHHHHH-TTCCTTCCCTTCCC-HHHHHHHH
T ss_pred             CCCCHHHHHHHhhhhcccccccccccccccccccccccccccccccccchhHHHhc-cCceeEeeCCCCCc-hhhHHHHc
Confidence            35689999999999999999888                            22332 44567889999999 99999999


Q ss_pred             CCHHHHHHHHHhhcccCCchhhhhhHHHHhccCCCCcHHHHHHHcCCHHHHHHHHhcCCCCCCCCCCCCCCHHHHHHHhc
Q 042183           81 GHCDIVSVLIERAKLLQHEDEELESGMIRMMNKEKHTALHEAVFHKIVDVVKILTREDLDYPYSANNYNKTPLCMVAEYE  160 (179)
Q Consensus        81 g~~~~v~~ll~~~~~~~~~~~~~~~~~~~~~~~~g~t~l~~A~~~g~~~~~~~Ll~~~~~~~~~~~~~g~tpl~~A~~~~  160 (179)
                      |+.+++++|+++|.+++.            ++..|.||||+|+..++.+++++|+..+.+++ ..|..|+||||+|+. .
T Consensus       114 ~~~e~~~~Ll~~g~d~~~------------~~~~~~t~L~~a~~~~~~~~~~~L~~~~~~i~-~~d~~g~TpL~~Aa~-~  179 (223)
T d1uoha_         114 NRHEIAVMLLEGGANPDA------------KDHYEATAMHRAAAKGNLKMIHILLYYKASTN-IQDTEGNTPLHLACD-E  179 (223)
T ss_dssp             TCHHHHHHHHHTTCCTTC------------CCTTSCCHHHHHHHTTCHHHHHHHHHTTCCSC-CCCTTCCCHHHHHHH-T
T ss_pred             CCHHHHHHHHHCCCCCCC------------cCCCCCccchhhhhcCCcchhhhhccccceee-eccCCCCceeccccc-c
Confidence            999999999999998877            88899999999999999999999999999876 889999999999999 9


Q ss_pred             CCHHHHHHHHhcCCCCCC
Q 042183          161 HSSHMVVAILKNCTSVSH  178 (179)
Q Consensus       161 ~~~~~~~~Ll~~g~~~~~  178 (179)
                      |+.+++++|+++|++++.
T Consensus       180 g~~~~v~~LL~~Gad~~~  197 (223)
T d1uoha_         180 ERVEEAKLLVSQGASIYI  197 (223)
T ss_dssp             TCHHHHHHHHHTTCCSCC
T ss_pred             CcHHHHHHHHHCCCCCCC
Confidence            999999999999988764

>d1oy3d_ d.211.1.1 (D:) Transcription factor inhibitor I-kappa-B-beta, IKBB {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Transcription factor inhibitor I-kappa-B-beta, IKBB
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.93  E-value=1.4e-25  Score=159.58  Aligned_cols=104  Identities=19%  Similarity=0.145  Sum_probs=93.9

Q ss_pred             cccccccCCCCCcHHHHHHHHcCCHHHHHHHHHhhcccCCchhhhhhHHHHhccCCCCcHHHHHHHcCCHHHHHHHHhcC
Q 042183           59 PSLLLQVNAKGDSRSLLVAAKFGHCDIVSVLIERAKLLQHEDEELESGMIRMMNKEKHTALHEAVFHKIVDVVKILTRED  138 (179)
Q Consensus        59 ~~~~~~~~~~g~t~~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~~~~~~~~~~~~g~t~l~~A~~~g~~~~~~~Ll~~~  138 (179)
                      ...++.+|..|.| |||+|+..++.+++++|++++.....           ..+..|.||||+|+..|+.+++++|+++|
T Consensus       148 ~~~in~~d~~g~T-pLh~A~~~~~~~~v~~Ll~~~~~~~~-----------~~~~~g~TpL~~A~~~~~~~~v~~Ll~~g  215 (255)
T d1oy3d_         148 RLQLEAENYDGHT-PLHVAVIHKDAEMVRLLRDAGADLNK-----------PEPTCGRTPLHLAVEAQAASVLELLLKAG  215 (255)
T ss_dssp             GGGTTCCCTTSCC-HHHHHHHTTCHHHHHHHHHHTCCTTC-----------CCTTTCCCHHHHHHHTTCHHHHHHHHHTT
T ss_pred             CcccccccccCcc-cccccccccccccccchhcccccccc-----------cccccccccccccccccHHHHHHHHHHCC
Confidence            3345678899999 99999999999999999999887664           24678999999999999999999999999


Q ss_pred             CCCCCCCCCCCCCHHHHHHHhcCCHHHHHHHHhcCCCC
Q 042183          139 LDYPYSANNYNKTPLCMVAEYEHSSHMVVAILKNCTSV  176 (179)
Q Consensus       139 ~~~~~~~~~~g~tpl~~A~~~~~~~~~~~~Ll~~g~~~  176 (179)
                      ++++ .+|..|.||||+|+. .++.+++++|+++||+-
T Consensus       216 adin-~~d~~g~t~L~~A~~-~~~~~i~~~Ll~~Ga~~  251 (255)
T d1oy3d_         216 ADPT-ARMYGGRTPLGSALL-RPNPILARLLRAHGAPE  251 (255)
T ss_dssp             CCTT-CCCTTSCCHHHHHHT-SSCHHHHHHHHHTTCCC
T ss_pred             CCCC-CCCCCCCCHHHHHHH-CCCHHHHHHHHHcCCCC
Confidence            9986 899999999999999 99999999999999863

>d1awcb_ d.211.1.1 (B:) GA bindinig protein (GABP) beta 1 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: GA bindinig protein (GABP) beta 1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.93  E-value=1.2e-25  Score=148.49  Aligned_cols=129  Identities=21%  Similarity=0.260  Sum_probs=108.6

Q ss_pred             CHHHHHHHHcCChHHHHHHHHHHHHhhCcccccccCCCCCcHHHHHHHHcCCHHHHHHHHHhhcccCCchhh--------
Q 042183           31 DPNLFKAAAAGNLEPFKDMAREEILEICPSLLLQVNAKGDSRSLLVAAKFGHCDIVSVLIERAKLLQHEDEE--------  102 (179)
Q Consensus        31 ~~~l~~A~~~g~~~~~~~ll~~~~~~~~~~~~~~~~~~g~t~~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~--------  102 (179)
                      .+||+.|++.|+.++++.|++      .+..++ .|..|.| |||+|+..++.++++.++............        
T Consensus         3 ~t~L~~Aa~~g~~~~v~~LL~------~ga~~~-~~~~g~t-~L~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   74 (153)
T d1awcb_           3 GKKLLEAARAGQDDEVRILMA------NGAPFT-TDWLGTS-PLHLAAQYGHFSTTEVLLRAGVSRDARTKVDRTPLHMA   74 (153)
T ss_dssp             HHHHHHHHHHTCHHHHHHHHH------HTCCCC-CCTTCCC-HHHHHHHHTCHHHHHHHHTTTCCTTCCCTTCCCHHHHH
T ss_pred             CHHHHHHHHCCCHHHHHHHHH------cCCCcc-cccCCCc-cccccccccccccccccccccccccccccccccccccc
Confidence            489999999999999999997      334444 6899999 999999999999999988876555442111        


Q ss_pred             -------------hhhHHHHhccCCCCcHHHHHHHcCCHHHHHHHHhcCCCCCCCCCCCCCCHHHHHHHhcCCHHHHHHH
Q 042183          103 -------------LESGMIRMMNKEKHTALHEAVFHKIVDVVKILTREDLDYPYSANNYNKTPLCMVAEYEHSSHMVVAI  169 (179)
Q Consensus       103 -------------~~~~~~~~~~~~g~t~l~~A~~~g~~~~~~~Ll~~~~~~~~~~~~~g~tpl~~A~~~~~~~~~~~~L  169 (179)
                                   ..+...+.++..|+||||+|+..|+.+++++|++.|++++ .+|.+|.||||+|+. +|+.+++++|
T Consensus        75 ~~~~~~~~~~~l~~~~~~~~~~~~~g~T~L~~A~~~g~~~iv~~ll~~gad~~-~~d~~g~Tpl~~A~~-~g~~eiv~lL  152 (153)
T d1awcb_          75 ASEGHANIVEVLLKHGADVNAKDMLKMTALHWATEHNHQEVVELLIKYGADVH-TQSKFCKTAFDISID-NGNEDLAEIL  152 (153)
T ss_dssp             HHHTCHHHHHHHHTTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTT-CCCTTSCCHHHHHHH-TTCHHHHHHH
T ss_pred             cccccceeeecccccCCccccccccCchHHHhhhhcchhheeeeccccccCCc-ccCCCCCCHHHHHHH-cCCHHHHHhC
Confidence                         2222345678899999999999999999999999999987 889999999999999 9999999876

>d2fo1e1 d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Lin-12
species: Caenorhabditis elegans [TaxId: 6239]

Probab=99.93  E-value=4.5e-26  Score=163.72  Aligned_cols=140  Identities=11%  Similarity=0.088  Sum_probs=113.6

Q ss_pred             cCCHHHHHHHHcCChHHHHHHHHHHH--HhhCcccccccCCCCCcHHHHHHHHcCCHHHHHHHHHhhcccCCchhh----
Q 042183           29 QIDPNLFKAAAAGNLEPFKDMAREEI--LEICPSLLLQVNAKGDSRSLLVAAKFGHCDIVSVLIERAKLLQHEDEE----  102 (179)
Q Consensus        29 ~~~~~l~~A~~~g~~~~~~~ll~~~~--~~~~~~~~~~~~~~g~t~~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~----  102 (179)
                      ...||||+|+..|+.++++.|+....  +-..+..++.+|.+|.| |||+|+..|+.+++++|+++|++++.....    
T Consensus        32 ~g~T~Lh~A~~~g~~~~v~~Ll~~~~~~~l~~Gadvn~~d~~G~T-pLh~A~~~g~~~iv~~Ll~~Gad~n~~~~~g~t~  110 (277)
T d2fo1e1          32 HNRTVLHWIASNSSAEKSEDLIVHEAKECIAAGADVNAMDCDENT-PLMLAVLARRRRLVAYLMKAGADPTIYNKSERSA  110 (277)
T ss_dssp             SCCCHHHHHHCTTCCSCCTTHHHHHHHHHHHTCCCTTCCCTTSCC-HHHHHHHHTCHHHHHHHHHTTCCSCCCCTTCCCH
T ss_pred             CCccHHHHHHHcCCHHHHHHHHhcchhHHHHcCCCccccCCCCCe-eecccccccccccccccccccccccccccccccc
Confidence            35699999999999999999886321  12356788999999999 999999999999999999999887763221    


Q ss_pred             --------------------------------------------------------------------------------
Q 042183          103 --------------------------------------------------------------------------------  102 (179)
Q Consensus       103 --------------------------------------------------------------------------------  102 (179)
                                                                                                      
T Consensus       111 l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~  190 (277)
T d2fo1e1         111 LHQAAANRDFGMMVYMLNSTKLKGDIEELDRNGMTALMIVAHNEGRDQVASAKLLVEKGAKVDYDGAARKDSEKYKGRTA  190 (277)
T ss_dssp             HHHHHHTTCHHHHHHHTTSHHHHHTTSCCCTTSCCHHHHHHHSCSTTHHHHHHHHHHHTCCSSCCSGGGTSSSSCCCCCT
T ss_pred             ccchhhhcchhhhhhhhhcccccccccccccccchhHHHHHhcccccccccccccccccccccccccccccccccCCCCc
Confidence                                                                                            


Q ss_pred             ------------------hhhHHHHhccCCCCcHHHHHHHcCCHHHHHHHHhcCCCCCCCCCCCCCCHHHHHHHhcCCHH
Q 042183          103 ------------------LESGMIRMMNKEKHTALHEAVFHKIVDVVKILTREDLDYPYSANNYNKTPLCMVAEYEHSSH  164 (179)
Q Consensus       103 ------------------~~~~~~~~~~~~g~t~l~~A~~~g~~~~~~~Ll~~~~~~~~~~~~~g~tpl~~A~~~~~~~~  164 (179)
                                        ......+.+|..|+||||+|+..|+.+++++|++.|++++ .+|..|.||||+|+. +|+.+
T Consensus       191 L~~~~~~~~~~~~~~~l~~~~~~~~~~d~~g~tpL~~A~~~g~~~iv~~Ll~~gadin-~~d~~G~T~L~~A~~-~~~~~  268 (277)
T d2fo1e1         191 LHYAAQVSNMPIVKYLVGEKGSNKDKQDEDGKTPIMLAAQEGRIEVVMYLIQQGASVE-AVDATDHTARQLAQA-NNHHN  268 (277)
T ss_dssp             HHHHHSSCCHHHHHHHHHHSCCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCSS-CCCSSSCCHHHHHHH-TTCHH
T ss_pred             cccccccccccccccccccccccccccCCCCCCHHHHHHHcCCHHHHHHHHHCcCCCC-CcCCCCCCHHHHHHH-cCCHH
Confidence                              0111223467778899999999999999999999998876 788899999999999 99999


Q ss_pred             HHHHHHh
Q 042183          165 MVVAILK  171 (179)
Q Consensus       165 ~~~~Ll~  171 (179)
                      ++++|++
T Consensus       269 iv~lL~~  275 (277)
T d2fo1e1         269 IVDIFDR  275 (277)
T ss_dssp             HHHHHHT
T ss_pred             HHHHHHH
Confidence            9998874

>d1s70b_ d.211.1.1 (B:) Myosin phosphatase targeting subunit 1, MYPT1 {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myosin phosphatase targeting subunit 1, MYPT1
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=99.93  E-value=1.6e-25  Score=162.10  Aligned_cols=140  Identities=21%  Similarity=0.179  Sum_probs=118.9

Q ss_pred             CHHHHHHHHcCChHHHHHHHHHHHHhhCcccccccCCCCCcHHHHHHHHcCCHHHHHHHHHhhcccCCchhh--------
Q 042183           31 DPNLFKAAAAGNLEPFKDMAREEILEICPSLLLQVNAKGDSRSLLVAAKFGHCDIVSVLIERAKLLQHEDEE--------  102 (179)
Q Consensus        31 ~~~l~~A~~~g~~~~~~~ll~~~~~~~~~~~~~~~~~~g~t~~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~--------  102 (179)
                      .++|+.||..|+++.|+.|++      .+.+++..|..|.| |||+|+.+|+.+++++|++++.+.......        
T Consensus        41 ~t~l~~A~~~G~~~~v~~Ll~------~Gadvn~~d~~G~T-~L~~A~~~g~~eiv~~Ll~~~~~~~~~~~~~~~~L~~a  113 (291)
T d1s70b_          41 GAVFLAACSSGDTEEVLRLLE------RGADINYANVDGLT-ALHQACIDDNVDMVKFLVENGANINQPDNEGWIPLHAA  113 (291)
T ss_dssp             HHHHHHHHHHTCHHHHHHHHH------HCCCTTCBCTTCCB-HHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHH
T ss_pred             chHHHHHHHcCCHHHHHHHHH------CCCCCCccCCCCCc-HHHHHHhcCCceeeeeeccccccccccccccccccccc
Confidence            478999999999999999998      56678899999999 999999999999999999998765442111        


Q ss_pred             ----------------------------------------hh---------------------------------hHHHH
Q 042183          103 ----------------------------------------LE---------------------------------SGMIR  109 (179)
Q Consensus       103 ----------------------------------------~~---------------------------------~~~~~  109 (179)
                                                              ..                                 .....
T Consensus       114 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  193 (291)
T d1s70b_         114 ASCGYLDIAEYLISQGAHVGAVNSEGDTPLDIAEEEAMEELLQNEVNRQGVDIEAARKEEERIMLRDARQWLNSGHINDV  193 (291)
T ss_dssp             HHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHCCSHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHHHTCCCCC
T ss_pred             ccccccchhhcccccCcccccccccCccccccccccccchhccccccccccccccccccccccccccchhhhcccccccc
Confidence                                                    00                                 00012


Q ss_pred             hccCCCCcHHHHHHHcCCHHHHHHHHhcCCCCCCCCCCCCCCHHHHHHHhcCCHHHHHHHHhcCCCCCCC
Q 042183          110 MMNKEKHTALHEAVFHKIVDVVKILTREDLDYPYSANNYNKTPLCMVAEYEHSSHMVVAILKNCTSVSHR  179 (179)
Q Consensus       110 ~~~~~g~t~l~~A~~~g~~~~~~~Ll~~~~~~~~~~~~~g~tpl~~A~~~~~~~~~~~~Ll~~g~~~~~r  179 (179)
                      ..+..|.||||.|+..|+.+++++|++.|++++ .++..|+||||+|+. .|+.+++++|+++|+|++.+
T Consensus       194 ~~~~~g~t~L~~a~~~~~~~~~~~Ll~~g~din-~~~~~g~TpL~~A~~-~g~~~iv~lLl~~Gadv~~~  261 (291)
T d1s70b_         194 RHAKSGGTALHVAAAKGYTEVLKLLIQARYDVN-IKDYDGWTPLHAAAH-WGKEEACRILVENLCDMEAV  261 (291)
T ss_dssp             CCTTTCCCHHHHHHHHTCHHHHHHHHTTTCCTT-CCCTTCCCHHHHHHH-TTCHHHHHHHHHTTCCTTCC
T ss_pred             cccCCCCChhhHHHHcCChhhhcccccceeccc-ccccCCCCHHHHHHH-cCCHHHHHHHHHCCCCCCCc
Confidence            245678999999999999999999999999986 889999999999999 99999999999999998753

>d1bd8a_ d.211.1.1 (A:) Cell cycle inhibitor p19ink4D {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Cell cycle inhibitor p19ink4D
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.93  E-value=2.1e-25  Score=148.12  Aligned_cols=130  Identities=19%  Similarity=0.209  Sum_probs=95.6

Q ss_pred             HHHHHHHcCChHHHHHHHHHHHHhhCcccccccCCCCCcHHHHHHHHcCCHHHHHHHHHhhcccCCchhh----------
Q 042183           33 NLFKAAAAGNLEPFKDMAREEILEICPSLLLQVNAKGDSRSLLVAAKFGHCDIVSVLIERAKLLQHEDEE----------  102 (179)
Q Consensus        33 ~l~~A~~~g~~~~~~~ll~~~~~~~~~~~~~~~~~~g~t~~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~----------  102 (179)
                      .|+.||..|+.+.|++|+.     ..+..++..|..|.| |||+|+ .|+.+++++|++++.+++.....          
T Consensus         5 ~L~~Aa~~g~~~~vk~lL~-----~~~~~~n~~d~~g~t-~L~~A~-~~~~~~v~~Ll~~~~~~~~~~~~~~~~l~~~~~   77 (156)
T d1bd8a_           5 RLSGAAARGDVQEVRRLLH-----RELVHPDALNRFGKT-ALQVMM-FGSTAIALELLKQGASPNVQDTSGTSPVHDAAR   77 (156)
T ss_dssp             HHHHHHHHTCHHHHHHHHH-----TTCCCTTCCCTTSCC-HHHHSC-TTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHH
T ss_pred             HHHHHHHcCCHHHHHHHHH-----hCCCCCCccCCCCCc-cccccc-ccccccccccccccccccccccccccccccccc
Confidence            3777777777777776655     345566666777777 777665 36667777777766665542211          


Q ss_pred             -----------hhhHHHHhccCCCCcHHHHHHHcCCHHHHHHHHhcCCCCCCCCCCCCCCHHHHHHHhcCCHHHHHHHHh
Q 042183          103 -----------LESGMIRMMNKEKHTALHEAVFHKIVDVVKILTREDLDYPYSANNYNKTPLCMVAEYEHSSHMVVAILK  171 (179)
Q Consensus       103 -----------~~~~~~~~~~~~g~t~l~~A~~~g~~~~~~~Ll~~~~~~~~~~~~~g~tpl~~A~~~~~~~~~~~~Ll~  171 (179)
                                 .....++.++..|+||||+|+..|+.+++++|+ .|+++. .+|.+|+||||+|+. .|+.+++++|++
T Consensus        78 ~~~~~~~~~~l~~~~~~n~~~~~~~t~L~~A~~~~~~~i~~~L~-~~~~~~-~~d~~G~TpL~~A~~-~g~~~iv~~Ll~  154 (156)
T d1bd8a_          78 TGFLDTLKVLVEHGADVNVPDGTGALPIHLAVQEGHTAVVSFLA-AESDLH-RRDARGLTPLELALQ-RGAQDLVDILQG  154 (156)
T ss_dssp             TTCHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHHTCHHHHHHHH-TTSCTT-CCCTTSCCHHHHHHH-SCCHHHHHHHHT
T ss_pred             cccccccccccccccccccccCCCCeeecccccccccccccccc-cccccc-ccCCCCCCHHHHHHH-cCCHHHHHHHHh
Confidence                       111123457888999999999999999999887 678865 889999999999999 999999999987


Q ss_pred             c
Q 042183          172 N  172 (179)
Q Consensus       172 ~  172 (179)
                      +
T Consensus       155 h  155 (156)
T d1bd8a_         155 H  155 (156)
T ss_dssp             T
T ss_pred             h
Confidence            6

>d1ot8a_ d.211.1.1 (A:) Neurogenic locus notch receptor domain {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Neurogenic locus notch receptor domain
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.92  E-value=3.4e-24  Score=148.11  Aligned_cols=127  Identities=16%  Similarity=0.131  Sum_probs=115.0

Q ss_pred             ccCCHHHHHHHHcCChHHHHHHHH--------------------------------------------------------
Q 042183           28 LQIDPNLFKAAAAGNLEPFKDMAR--------------------------------------------------------   51 (179)
Q Consensus        28 ~~~~~~l~~A~~~g~~~~~~~ll~--------------------------------------------------------   51 (179)
                      ....+|||+||+.|+.++++.|+.                                                        
T Consensus        21 ~~G~t~L~~A~~~g~~e~v~~Ll~~g~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  100 (209)
T d1ot8a_          21 KTGETSLHLAARFARADAAKRLLDAGADANSQDNTGRTPLHAAVAADAMGVFQILLRNRATNLNARMHDGTTPLILAARL  100 (209)
T ss_dssp             HHCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHTCTTCCTTCCCTTCCCHHHHHHHT
T ss_pred             CCCCCHHHHHHHcCCHHHHHHHHhhccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence            346789999999999999999999                                                        


Q ss_pred             -----HHHHhhCcccccccCCCCCcHHHHHHHHcCCHHHHHHHHHhhcccCCchhhhhhHHHHhccCCCCcHHHHHHHcC
Q 042183           52 -----EEILEICPSLLLQVNAKGDSRSLLVAAKFGHCDIVSVLIERAKLLQHEDEELESGMIRMMNKEKHTALHEAVFHK  126 (179)
Q Consensus        52 -----~~~~~~~~~~~~~~~~~g~t~~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~~~~~~~~~~~~g~t~l~~A~~~g  126 (179)
                           ...+...+..++.++..|.| ||++++..+..++++.+++.+...+.            +|..|.||||.|+..|
T Consensus       101 ~~~~~~~~L~~~~~~~~~~~~~~~t-~l~~~~~~~~~~~~~~l~~~~~~~~~------------~d~~g~TpL~~A~~~g  167 (209)
T d1ot8a_         101 AIEGMVEDLITADADINAADNSGKT-ALHWAAAVNNTEAVNILLMHHANRDA------------QDDKDETPLFLAAREG  167 (209)
T ss_dssp             TCTTHHHHHHHTTCCTTCBCTTSCB-HHHHHHHTTCHHHHHHHHHTTCCTTC------------CCTTCCCHHHHHHHTT
T ss_pred             cchhhhhhhhhhcccccccCCCCCC-cchhhcccCcceeeeeeccccccccc------------cccccccccchhcccc
Confidence                 23344456667888999999 99999999999999999999988777            8999999999999999


Q ss_pred             CHHHHHHHHhcCCCCCCCCCCCCCCHHHHHHHhcCCHHHHHHH
Q 042183          127 IVDVVKILTREDLDYPYSANNYNKTPLCMVAEYEHSSHMVVAI  169 (179)
Q Consensus       127 ~~~~~~~Ll~~~~~~~~~~~~~g~tpl~~A~~~~~~~~~~~~L  169 (179)
                      +.+++++|++.|++++ .+|..|+||||+|+. +|+.+++++|
T Consensus       168 ~~~~v~~Ll~~gad~n-~~d~~g~Tpl~~A~~-~~~~~iv~lL  208 (209)
T d1ot8a_         168 SYEASKALLDNFANRE-ITDHMDRLPRDVASE-RLHHDIVRLL  208 (209)
T ss_dssp             CHHHHHHHHHTTCCTT-CCCTTSCCHHHHHHH-TTCHHHHHHH
T ss_pred             HHHHHHHHHHCCCCCC-CcCCCCCCHHHHHHH-cCCHHHHhhc
Confidence            9999999999999976 899999999999999 9999999986

>d1k1aa_ d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: bcl-3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.92  E-value=5.1e-24  Score=147.40  Aligned_cols=145  Identities=15%  Similarity=0.095  Sum_probs=120.6

Q ss_pred             cCCHHHHHHHHcCChHHHHHHHHHHHHhhCcccccccCCCCCcHHHHHHHHcCCHHHHHHHHHhhcccCCchhh------
Q 042183           29 QIDPNLFKAAAAGNLEPFKDMAREEILEICPSLLLQVNAKGDSRSLLVAAKFGHCDIVSVLIERAKLLQHEDEE------  102 (179)
Q Consensus        29 ~~~~~l~~A~~~g~~~~~~~ll~~~~~~~~~~~~~~~~~~g~t~~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~------  102 (179)
                      +.+||||.||..|+.++++.|++.  +...+..++.+|..|+| |||+|+..|+.+++++|+++++..+.....      
T Consensus         2 dG~TpLh~A~~~g~~~~v~~Ll~~--~~~~g~~in~~d~~g~T-pL~~A~~~~~~~iv~~Ll~~ga~~~~~~~~~~~~~~   78 (228)
T d1k1aa_           2 DGDTPLHIAVVQGNLPAVHRLVNL--FQQGGRELDIYNNLRQT-PLHLAVITTLPSVVRLLVTAGASPMALDRHGQTAAH   78 (228)
T ss_dssp             TTCCHHHHHHHTTCHHHHHHHHHH--HHHTTCCSCCCCTTSCC-HHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHH
T ss_pred             CCccHHHHHHHcCCHHHHHHHHHH--HHHCCCCCCccCCCCCc-cceehhcccccccccccccccccccccccccccccc
Confidence            357899999999999999999862  22466778999999999 999999999999999999999877653221      


Q ss_pred             ---------------------------------------------hhhH--------HHHhccCCCCcHHHHHHHcCCHH
Q 042183          103 ---------------------------------------------LESG--------MIRMMNKEKHTALHEAVFHKIVD  129 (179)
Q Consensus       103 ---------------------------------------------~~~~--------~~~~~~~~g~t~l~~A~~~g~~~  129 (179)
                                                                   ....        ........+.++++.|+..+...
T Consensus        79 ~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~a~~~~~~~  158 (228)
T d1k1aa_          79 LACEHRSPTCLRALLDSAAPGTLDLEARNYDGLTALHVAVNTECQETVQLLLERGADIDAVDIKSGRSPLIHAVENNSLS  158 (228)
T ss_dssp             HHHHTTCHHHHHHHHHHSCTTSCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTTCCCHHHHHHHTTCHH
T ss_pred             cccccccccchhhhhhccccccccccccccccccccccccccccchhhhhhhccccccccccccchhhHHHHHHHhhhhh
Confidence                                                         0000        11123456889999999999999


Q ss_pred             HHHHHHhcCCCCCCCCCCCCCCHHHHHHHhcCCHHHHHHHHhcCCCCCC
Q 042183          130 VVKILTREDLDYPYSANNYNKTPLCMVAEYEHSSHMVVAILKNCTSVSH  178 (179)
Q Consensus       130 ~~~~Ll~~~~~~~~~~~~~g~tpl~~A~~~~~~~~~~~~Ll~~g~~~~~  178 (179)
                      +++++++.+.+.. .+|..|.|||++|+. .|+.+++++|+++|+|++.
T Consensus       159 ~~~~~~~~~~~~~-~~d~~g~t~L~~A~~-~g~~~~v~~Ll~~Gad~n~  205 (228)
T d1k1aa_         159 MVQLLLQHGANVN-AQMYSGSSALHSASG-RGLLPLVRTLVRSGADSSL  205 (228)
T ss_dssp             HHHHHHHTTCCTT-CBCTTSCBHHHHHHH-HTCHHHHHHHHHTTCCTTC
T ss_pred             hhhhhhhhccccc-cccccCcchHHHHHH-cCCHHHHHHHHHCCCCCCC
Confidence            9999999998876 789999999999999 9999999999999998875

>d1uoha_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.92  E-value=8.6e-24  Score=147.99  Aligned_cols=140  Identities=19%  Similarity=0.244  Sum_probs=111.6

Q ss_pred             CHHHHHHHHcCChHHHHHHHHHHHHhhCcccccccCCCCCcHHHHHHHHcCCHHHHHHHHHhhcccCCchhh--------
Q 042183           31 DPNLFKAAAAGNLEPFKDMAREEILEICPSLLLQVNAKGDSRSLLVAAKFGHCDIVSVLIERAKLLQHEDEE--------  102 (179)
Q Consensus        31 ~~~l~~A~~~g~~~~~~~ll~~~~~~~~~~~~~~~~~~g~t~~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~--------  102 (179)
                      +..|+.++..|+++.++.++.     ..+..++.+|..|+| |||+|+..|+.+++++++..+.........        
T Consensus         4 ~~~~~~~a~~G~~~~v~~~l~-----~~~~~~~~~D~~G~T-pLh~Aa~~g~~e~~~~l~~~~~~~~~~~~~~~~~~~~~   77 (223)
T d1uoha_           4 NLMVCNLAYSGKLEELKESIL-----ADKSLATRTDQDSRT-ALHWACSAGHTEIVEFLLQLGVPVNDKDDAGWSPLHIA   77 (223)
T ss_dssp             SSHHHHHHHTTCHHHHHHHHH-----HCGGGGGCCCTTSCC-HHHHHHHHTCHHHHHHHHHHTCCSCCCCTTCCCHHHHH
T ss_pred             HHHHHHHHHhCCHHHHHHHHH-----hCCCcCcCcCCCCCC-HHHHHHHhhhhccccccccccccccccccccccccccc
Confidence            356889999999999998876     578889999999999 999999999999999999988766652211        


Q ss_pred             -------------hhhHHHHhccCCCCcHHHHHHHcCCHHHHHHHHhcCCCCCCCCCCCCCCHHHHHHHhcCCHHHHHHH
Q 042183          103 -------------LESGMIRMMNKEKHTALHEAVFHKIVDVVKILTREDLDYPYSANNYNKTPLCMVAEYEHSSHMVVAI  169 (179)
Q Consensus       103 -------------~~~~~~~~~~~~g~t~l~~A~~~g~~~~~~~Ll~~~~~~~~~~~~~g~tpl~~A~~~~~~~~~~~~L  169 (179)
                                   ..+..++.+|..|+||||+|+..|+.+++++|++.|++++ .++..|.||||+|+. .++.+++++|
T Consensus        78 ~~~~~~~i~~~Ll~~~~d~~~~d~~g~tpL~~A~~~~~~e~~~~Ll~~g~d~~-~~~~~~~t~L~~a~~-~~~~~~~~~L  155 (223)
T d1uoha_          78 ASAGRDEIVKALLGKGAQVNAVNQNGCTPLHYAASKNRHEIAVMLLEGGANPD-AKDHYEATAMHRAAA-KGNLKMIHIL  155 (223)
T ss_dssp             HHHTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCTT-CCCTTSCCHHHHHHH-TTCHHHHHHH
T ss_pred             ccccccchhHHHhccCceeEeeCCCCCchhhHHHHcCCHHHHHHHHHCCCCCC-CcCCCCCccchhhhh-cCCcchhhhh
Confidence                         1112334567778888888888888888888888888765 677788888888888 8888888888


Q ss_pred             HhcCCCCCC
Q 042183          170 LKNCTSVSH  178 (179)
Q Consensus       170 l~~g~~~~~  178 (179)
                      +..|.+++.
T Consensus       156 ~~~~~~i~~  164 (223)
T d1uoha_         156 LYYKASTNI  164 (223)
T ss_dssp             HHTTCCSCC
T ss_pred             ccccceeee
Confidence            888877654

>d1myoa_ d.211.1.1 (A:) Myotrophin {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myotrophin
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.91  E-value=1.1e-24  Score=138.18  Aligned_cols=92  Identities=17%  Similarity=0.170  Sum_probs=88.4

Q ss_pred             HHHHHHHcCCHHHHHHHHHhhcccCCchhhhhhHHHHhccCCCCcHHHHHHHcCCHHHHHHHHhcCCCCCCCCCCCCCCH
Q 042183           73 SLLVAAKFGHCDIVSVLIERAKLLQHEDEELESGMIRMMNKEKHTALHEAVFHKIVDVVKILTREDLDYPYSANNYNKTP  152 (179)
Q Consensus        73 ~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~~~~~~~~~~~~g~t~l~~A~~~g~~~~~~~Ll~~~~~~~~~~~~~g~tp  152 (179)
                      ||++|+++|+.+++++|+++|++++.            ++..|+||||+|+..|+.+++++|++.|++++ .+|..|+||
T Consensus         5 pL~~A~~~g~~~~v~~Ll~~g~d~n~------------~~~~g~t~lh~A~~~~~~~~~~~ll~~g~din-~~d~~g~tp   71 (118)
T d1myoa_           5 EFMWALKNGDLDEVKDYVAKGEDVNR------------TLEGGRKPLHYAADCGQLEILEFLLLKGADIN-APDKHHITP   71 (118)
T ss_dssp             HHHHHHHTTCHHHHHHHHTTTCCCCC------------CSSSSCCTTHHHHHHSTTTHHHHHHHSSCTTT-CCSSSCSCH
T ss_pred             HHHHHHHCCCHHHHHHHHHhhhcccc------------ccccccccccccccccccccccccccccceee-ecccccccc
Confidence            99999999999999999999998887            99999999999999999999999999999987 889999999


Q ss_pred             HHHHHHhcCCHHHHHHHHhcCCCCCC
Q 042183          153 LCMVAEYEHSSHMVVAILKNCTSVSH  178 (179)
Q Consensus       153 l~~A~~~~~~~~~~~~Ll~~g~~~~~  178 (179)
                      ||+|+. +|+.+++++|+++|++++.
T Consensus        72 Lh~A~~-~~~~~~v~~Ll~~Gad~~~   96 (118)
T d1myoa_          72 LLSAVY-EGHVSCVKLLLSKGADKTV   96 (118)
T ss_dssp             HHHHHT-TTCCHHHHHHHTTCCCSSS
T ss_pred             hhhhhh-cCchhhhhhhhccccccee
Confidence            999999 9999999999999999864

>d1ycsb1 d.211.1.1 (B:327-456) 53BP2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 53BP2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.90  E-value=1.1e-23  Score=135.79  Aligned_cols=92  Identities=25%  Similarity=0.241  Sum_probs=87.9

Q ss_pred             HHHHHHHcCCHHHHHHHHHhhcccCCchhhhhhHHHHhccCCCCcHHHHHHHcCCHHHHHHHHhcCCCCCCCCCCCCCCH
Q 042183           73 SLLVAAKFGHCDIVSVLIERAKLLQHEDEELESGMIRMMNKEKHTALHEAVFHKIVDVVKILTREDLDYPYSANNYNKTP  152 (179)
Q Consensus        73 ~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~~~~~~~~~~~~g~t~l~~A~~~g~~~~~~~Ll~~~~~~~~~~~~~g~tp  152 (179)
                      +|+.||..|+.+++++|+++|++++.            +|.+|+||||+|+..|+.+++++|++.|++++ ..|.+|+||
T Consensus         4 lL~~A~~~G~~~~v~~Ll~~g~d~n~------------~d~~g~t~Lh~A~~~~~~~~~~~ll~~g~~~~-~~d~~g~tp   70 (130)
T d1ycsb1           4 LLLDSSLEGEFDLVQRIIYEVDDPSL------------PNDEGITALHNAVCAGHTEIVKFLVQFGVNVN-AADSDGWTP   70 (130)
T ss_dssp             HHHHHHHHTCHHHHHHHTSTTSSCCC------------CCTTSCCHHHHHHHHTCHHHHHHHHHHTCCTT-CCCTTCCCH
T ss_pred             HHHHHHHcCCHHHHHHHHHcCCCccc------------cccccccccccccccccccccccccccccccc-cccccCccc
Confidence            79999999999999999999998888            99999999999999999999999999999976 899999999


Q ss_pred             HHHHHHhcCCHHHHHHHHhcCCCCCC
Q 042183          153 LCMVAEYEHSSHMVVAILKNCTSVSH  178 (179)
Q Consensus       153 l~~A~~~~~~~~~~~~Ll~~g~~~~~  178 (179)
                      ||+|+. .|+.+++++|+++|++++.
T Consensus        71 Lh~A~~-~g~~~~v~~Ll~~ga~v~~   95 (130)
T d1ycsb1          71 LHCAAS-CNNVQVCKFLVESGAAVFA   95 (130)
T ss_dssp             HHHHHH-TTCHHHHHHHHHTTCCTTC
T ss_pred             ccccch-hhHHHHHHHHHHcCCCccc
Confidence            999999 9999999999999998763

>d1wdya_ d.211.1.1 (A:) RNase L, 2-5a-dependent ribonuclease {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: RNase L, 2-5a-dependent ribonuclease
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.90  E-value=8.6e-23  Score=146.93  Aligned_cols=131  Identities=18%  Similarity=0.163  Sum_probs=114.7

Q ss_pred             cCCHHHHHHHHcCChHHHHHHHHHHHHhhCcccccccCCCCCcHHHHHHHHcC----CHHHHHHHHHhhcccCCchhhhh
Q 042183           29 QIDPNLFKAAAAGNLEPFKDMAREEILEICPSLLLQVNAKGDSRSLLVAAKFG----HCDIVSVLIERAKLLQHEDEELE  104 (179)
Q Consensus        29 ~~~~~l~~A~~~g~~~~~~~ll~~~~~~~~~~~~~~~~~~g~t~~L~~A~~~g----~~~~v~~ll~~~~~~~~~~~~~~  104 (179)
                      ...++||.|++.|+.++++.|++     ..+..++..+..|.+ +++.+...+    ..+++++|+++|++++.      
T Consensus       147 ~g~t~L~~A~~~~~~~~~~~Ll~-----~~~~~i~~~~~~~~~-~~~~~~~~~~~~~~~~i~~~Li~~ga~~n~------  214 (285)
T d1wdya_         147 GGATALMDAAEKGHVEVLKILLD-----EMGADVNACDNMGRN-ALIHALLSSDDSDVEAITHLLLDHGADVNV------  214 (285)
T ss_dssp             CCCCHHHHHHHHTCHHHHHHHHH-----TSCCCTTCCCTTSCC-HHHHHHHCSCTTTHHHHHHHHHHTTCCSSC------
T ss_pred             cCchHHHHHHHcCCHHHHHHHHh-----ccCCCcccccCCCCc-ccccccccccchHHHHHHHHHHHCCCCCCc------
Confidence            34578999999999999999876     456778889999998 777665443    34699999999998877      


Q ss_pred             hHHHHhccCCCCcHHHHHHHcCCHHHHHHHHhc-CCCCCCCCCCCCCCHHHHHHHhcCCHHHHHHHHhcCCCCCCC
Q 042183          105 SGMIRMMNKEKHTALHEAVFHKIVDVVKILTRE-DLDYPYSANNYNKTPLCMVAEYEHSSHMVVAILKNCTSVSHR  179 (179)
Q Consensus       105 ~~~~~~~~~~g~t~l~~A~~~g~~~~~~~Ll~~-~~~~~~~~~~~g~tpl~~A~~~~~~~~~~~~Ll~~g~~~~~r  179 (179)
                            ++..|.||||+|+..|+.+++++|++. |++++ .+|.+|.||||+|+. .|+.+++++|+++|||++.+
T Consensus       215 ------~~~~g~t~L~~a~~~~~~~~v~~lL~~~g~din-~~d~~G~TpL~~A~~-~~~~eiv~~Ll~~GAd~n~~  282 (285)
T d1wdya_         215 ------RGERGKTPLILAVEKKHLGLVQRLLEQEHIEIN-DTDSDGKTALLLAVE-LKLKKIAELLCKRGASTDCG  282 (285)
T ss_dssp             ------CCTTSCCHHHHHHHTTCHHHHHHHHHSSSCCTT-CCCTTSCCHHHHHHH-TTCHHHHHHHHHHSSCSCCS
T ss_pred             ------cCCCCCCccchhhhcCcHHHHHHHHHcCCCCCc-CCCCCCCCHHHHHHH-cCCHHHHHHHHHCCCCCCcc
Confidence                  899999999999999999999999985 78876 899999999999999 99999999999999999753

>d1iknd_ d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: I-kappa-B-alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.88  E-value=2.4e-22  Score=140.21  Aligned_cols=138  Identities=16%  Similarity=0.059  Sum_probs=91.3

Q ss_pred             cccCCHHHHHHHHcCChHHHHHHHHHHHHhhCcccccccCCCCCcHHHHHHHHcCCHHHHHHHHHhhcccCCchhh----
Q 042183           27 QLQIDPNLFKAAAAGNLEPFKDMAREEILEICPSLLLQVNAKGDSRSLLVAAKFGHCDIVSVLIERAKLLQHEDEE----  102 (179)
Q Consensus        27 ~~~~~~~l~~A~~~g~~~~~~~ll~~~~~~~~~~~~~~~~~~g~t~~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~----  102 (179)
                      .....||||+|+..|+.+++++|++      .+..++.+|..|.+ ||++++..++.++++.++..+.........    
T Consensus        36 d~~g~TpLh~A~~~~~~~iv~~L~~------~g~d~~~~d~~g~t-~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~  108 (221)
T d1iknd_          36 NNLQQTPLHLAVITNQPEIAEALLG------AGCDPELRDFRGNT-PLHLACEQGCLASVGVLTQSCTTPHLHSILKATN  108 (221)
T ss_dssp             CTTCCCHHHHHHHTTCHHHHHCCCS------CCCCSCCCCTTCCC-HHHHHHHHTCHHHHHHHHHSTTTTSSSCGGGCCC
T ss_pred             CCCCCcccccccccccccccccccc------cccccccccccccc-ccccccccccccccchhhhhcccccccccccccc
Confidence            3456689999999999999988876      66677889999999 999999999999999999876544331100    


Q ss_pred             -----------------------hhhHHHHh-ccCCCCcHHHHHHHcCCHHHHHHHHhcCCCCCCCCCCCCCCHHHHHHH
Q 042183          103 -----------------------LESGMIRM-MNKEKHTALHEAVFHKIVDVVKILTREDLDYPYSANNYNKTPLCMVAE  158 (179)
Q Consensus       103 -----------------------~~~~~~~~-~~~~g~t~l~~A~~~g~~~~~~~Ll~~~~~~~~~~~~~g~tpl~~A~~  158 (179)
                                             ..+..++. .+..|.||||+|+..|+.+++++|++.|++++ .+|..|+||||+|+.
T Consensus       109 ~~~~t~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~G~T~L~~A~~~g~~~~v~~Ll~~gad~~-~~~~~G~tpl~~A~~  187 (221)
T d1iknd_         109 YNGHTCLHLASIHGYLGIVELLVSLGADVNAQEPCNGRTALHLAVDLQNPDLVSLLLKCGADVN-RVTYQGYSPYQLTWG  187 (221)
T ss_dssp             TTCCCHHHHHHHTTCHHHHHHHHHHTCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHTTTCCSC-CCCTTCCCGGGGCTT
T ss_pred             cccchhhhHHhhcCChhheeeecccCcccccccccCCCCccccccccccHHHHHHHHhcCCccc-ccCCCCCCHHHHHHH
Confidence                                   00001111 22345666666666666666666666666644 556666666666666


Q ss_pred             hcCCHHHHHHHHhcC
Q 042183          159 YEHSSHMVVAILKNC  173 (179)
Q Consensus       159 ~~~~~~~~~~Ll~~g  173 (179)
                       .++.+++++|++.+
T Consensus       188 -~~~~~~~~~l~~~~  201 (221)
T d1iknd_         188 -RPSTRIQQQLGQLT  201 (221)
T ss_dssp             -SSCHHHHHHHHTTS
T ss_pred             -CCCHHHHHHHHHcC
Confidence             56666666665554

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.87  E-value=1.4e-21  Score=146.98  Aligned_cols=131  Identities=18%  Similarity=0.168  Sum_probs=86.5

Q ss_pred             HHHHHHHHcCChHHHHHHHHHHHHhhCcccccccCCCCCcHHHHHHHHcCCHHHHHHHHHhhcccCCchhh---------
Q 042183           32 PNLFKAAAAGNLEPFKDMAREEILEICPSLLLQVNAKGDSRSLLVAAKFGHCDIVSVLIERAKLLQHEDEE---------  102 (179)
Q Consensus        32 ~~l~~A~~~g~~~~~~~ll~~~~~~~~~~~~~~~~~~g~t~~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~---------  102 (179)
                      ++|+.|+..++.+.++.++.      .....+..+..|.+ ||+.|+..++.+++++|+++|++++.....         
T Consensus       233 t~l~~a~~~~~~~~~~~~~~------~~~~~~~~~~~g~~-~l~~a~~~~~~~i~~~Ll~~g~~~~~~~~~~~t~L~~~~  305 (408)
T d1n11a_         233 TPLHLAAQEGHAEMVALLLS------KQANGNLGNKSGLT-PLHLVAQEGHVPVADVLIKHGVMVDATTRMGYTPLHVAS  305 (408)
T ss_dssp             CHHHHHHHTTCHHHHHHHHT------TTCCTTCCCTTCCC-HHHHHHHHTCHHHHHHHHHHTCCTTCCCSSCCCHHHHHH
T ss_pred             CHHHHHHHhCcHhHhhhhhc------cccccccccCCCCC-hhhhhhhcCcHHHHHHHHHCCCccccccccccccchhhc
Confidence            44555555555555544433      23333444445555 555555555555555555554443321100         


Q ss_pred             ------------hhhHHHHhccCCCCcHHHHHHHcCCHHHHHHHHhcCCCCCCCCCCCCCCHHHHHHHhcCCHHHHHHHH
Q 042183          103 ------------LESGMIRMMNKEKHTALHEAVFHKIVDVVKILTREDLDYPYSANNYNKTPLCMVAEYEHSSHMVVAIL  170 (179)
Q Consensus       103 ------------~~~~~~~~~~~~g~t~l~~A~~~g~~~~~~~Ll~~~~~~~~~~~~~g~tpl~~A~~~~~~~~~~~~Ll  170 (179)
                                  ..+..++.+|.+|.||||.|++.|+.+++++|+++|++++ .+|..|.||||+|++ .|+.+++++|.
T Consensus       306 ~~~~~~~~~~ll~~g~~in~~d~~G~T~Lh~A~~~g~~~iv~~Ll~~GAd~n-~~d~~G~t~L~~A~~-~~~~~iv~~L~  383 (408)
T d1n11a_         306 HYGNIKLVKFLLQHQADVNAKTKLGYSPLHQAAQQGHTDIVTLLLKNGASPN-EVSSDGTTPLAIAKR-LGYISVTDVLK  383 (408)
T ss_dssp             HSSCSHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCSC-CCCSSSCCHHHHHHH-TTCHHHHHHHH
T ss_pred             ccCcceeeeeeccccccccccCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCC-CCCCCCCCHHHHHHH-cCCHHHHHHHH
Confidence                        1112234489999999999999999999999999999987 899999999999999 99999998664


Q ss_pred             h
Q 042183          171 K  171 (179)
Q Consensus       171 ~  171 (179)
                      .
T Consensus       384 ~  384 (408)
T d1n11a_         384 V  384 (408)
T ss_dssp             H
T ss_pred             H
Confidence            3

>d1ot8a_ d.211.1.1 (A:) Neurogenic locus notch receptor domain {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Neurogenic locus notch receptor domain
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.87  E-value=3.1e-22  Score=138.13  Aligned_cols=127  Identities=23%  Similarity=0.281  Sum_probs=108.1

Q ss_pred             hHHHHHHHHHHHHhhCcccccc-cCCCCCcHHHHHHHHcCCHHHHHHHHHhhcccCCchhh-------------------
Q 042183           43 LEPFKDMAREEILEICPSLLLQ-VNAKGDSRSLLVAAKFGHCDIVSVLIERAKLLQHEDEE-------------------  102 (179)
Q Consensus        43 ~~~~~~ll~~~~~~~~~~~~~~-~~~~g~t~~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~-------------------  102 (179)
                      .|+|+.|++      .+..++. .|.+|.| |||+||.+|+.+++++|++.++.++.....                   
T Consensus         2 ~~~v~~Ll~------~g~din~~~d~~G~t-~L~~A~~~g~~e~v~~Ll~~g~~~n~~~~~~~~~~~~~~~~~~~~~~~~   74 (209)
T d1ot8a_           2 AQVISDLLA------QGAELNATMDKTGET-SLHLAARFARADAAKRLLDAGADANSQDNTGRTPLHAAVAADAMGVFQI   74 (209)
T ss_dssp             HHHHHHHHH------HHHHHHHHHHHHCCC-HHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHH
T ss_pred             HHHHHHHHH------CCCCcCcCcCCCCCC-HHHHHHHcCCHHHHHHHHhhccccccccccccccccccccccccccccc
Confidence            478888887      4556775 5899999 999999999999999999999887663221                   


Q ss_pred             ------------------------------------hhhHHHHhccCCCCcHHHHHHHcCCHHHHHHHHhcCCCCCCCCC
Q 042183          103 ------------------------------------LESGMIRMMNKEKHTALHEAVFHKIVDVVKILTREDLDYPYSAN  146 (179)
Q Consensus       103 ------------------------------------~~~~~~~~~~~~g~t~l~~A~~~g~~~~~~~Ll~~~~~~~~~~~  146 (179)
                                                          ..+..++.++..|+|||+.++..+..++++.++..+.+++ ..|
T Consensus        75 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~~~~t~l~~~~~~~~~~~~~~l~~~~~~~~-~~d  153 (209)
T d1ot8a_          75 LLRNRATNLNARMHDGTTPLILAARLAIEGMVEDLITADADINAADNSGKTALHWAAAVNNTEAVNILLMHHANRD-AQD  153 (209)
T ss_dssp             HHTCTTCCTTCCCTTCCCHHHHHHHTTCTTHHHHHHHTTCCTTCBCTTSCBHHHHHHHTTCHHHHHHHHHTTCCTT-CCC
T ss_pred             cccccccccccccccccccccccccccchhhhhhhhhhcccccccCCCCCCcchhhcccCcceeeeeecccccccc-ccc
Confidence                                                1112235678889999999999999999999999999976 889


Q ss_pred             CCCCCHHHHHHHhcCCHHHHHHHHhcCCCCCC
Q 042183          147 NYNKTPLCMVAEYEHSSHMVVAILKNCTSVSH  178 (179)
Q Consensus       147 ~~g~tpl~~A~~~~~~~~~~~~Ll~~g~~~~~  178 (179)
                      ..|.||||+|+. .|+.+++++|+++|+|++.
T Consensus       154 ~~g~TpL~~A~~-~g~~~~v~~Ll~~gad~n~  184 (209)
T d1ot8a_         154 DKDETPLFLAAR-EGSYEASKALLDNFANREI  184 (209)
T ss_dssp             TTCCCHHHHHHH-TTCHHHHHHHHHTTCCTTC
T ss_pred             cccccccchhcc-ccHHHHHHHHHHCCCCCCC
Confidence            999999999999 9999999999999999864

>d1ixva_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.87  E-value=4.9e-22  Score=138.92  Aligned_cols=124  Identities=16%  Similarity=0.106  Sum_probs=109.8

Q ss_pred             cCCHHHHHHHHcCChHHHHHHHHHHHHhhCcccccccCCCCCcHHHHHHHHcCCHHHHHHHHHhhc-ccCCchhhhhhHH
Q 042183           29 QIDPNLFKAAAAGNLEPFKDMAREEILEICPSLLLQVNAKGDSRSLLVAAKFGHCDIVSVLIERAK-LLQHEDEELESGM  107 (179)
Q Consensus        29 ~~~~~l~~A~~~g~~~~~~~ll~~~~~~~~~~~~~~~~~~g~t~~L~~A~~~g~~~~v~~ll~~~~-~~~~~~~~~~~~~  107 (179)
                      ...++++.++..++.++++.|+.      .+...+..+..|+| |||+|+..|+.+++++|++.+. ..+.         
T Consensus       104 ~~~~~l~~~~~~~~~~~~~~l~~------~~~~~~~~~~~g~t-~l~~a~~~~~~~~~~~Ll~~~~~~in~---------  167 (229)
T d1ixva_         104 QGVTCLHLAVGKKWFEVSQFLIE------NGASVRIKDKFNQI-PLHRAASVGSLKLIELLCGLGKSAVNW---------  167 (229)
T ss_dssp             TSCCHHHHHHHTTCHHHHHHHHH------TTCCSCCCCTTSCC-HHHHHHHHTCHHHHHHHHTTTCCCSCC---------
T ss_pred             ccccccccccccchhhhhhhhhh------hcccccccCCCCCC-ccchhhhcccccccccccccccccccc---------
Confidence            34578999999999999998887      66677888999999 9999999999999999999874 4444         


Q ss_pred             HHhccCCCCcHHHHHHHcCCHHHHHHHHhc-CCCCCCCCCCCCCCHHHHHHHhcCCHHHHHHHHhcCCCC
Q 042183          108 IRMMNKEKHTALHEAVFHKIVDVVKILTRE-DLDYPYSANNYNKTPLCMVAEYEHSSHMVVAILKNCTSV  176 (179)
Q Consensus       108 ~~~~~~~g~t~l~~A~~~g~~~~~~~Ll~~-~~~~~~~~~~~g~tpl~~A~~~~~~~~~~~~Ll~~g~~~  176 (179)
                         +|.+|+||||+|+..|+.+++++|++. |++++ .+|..|+|||++|+.    .+++++|+++|+|.
T Consensus       168 ---~d~~g~TpLh~A~~~~~~~~v~~Ll~~~gad~~-~~d~~g~t~l~~A~~----~~~~~~Ll~~g~d~  229 (229)
T d1ixva_         168 ---QDKQGWTPLFHALAEGHGDAAVLLVEKYGAEYD-LVDNKGAKAEDVALN----EQVKKFFLNNVVDA  229 (229)
T ss_dssp             ---CCTTSCCHHHHHHHTTCHHHHHHHHHHHCCCSC-CCCTTSCCTGGGCSC----HHHHHHHHHHCCCC
T ss_pred             ---cccccCCchhhhcccccHHHHHHHHHhcCCCCC-CcCCCCCCHHHHHhh----HHHHHHHHHcCCCC
Confidence               889999999999999999999999974 89986 899999999999887    47999999999873

>d2ajaa1 a.118.24.1 (A:3-348) Hypothetical protein LPG2416 {Legionella pneumophila [TaxId: 446]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Pseudo ankyrin repeat-like
family: Pseudo ankyrin repeat
domain: Hypothetical protein LPG2416
species: Legionella pneumophila [TaxId: 446]

Probab=99.87  E-value=1.1e-24  Score=161.94  Aligned_cols=131  Identities=15%  Similarity=0.096  Sum_probs=104.5

Q ss_pred             CHHHHHHHHcCChHHHHHHHHHHHHhhCcccccccCCCCCcHHHHHHHHcCCHHHHHHHHHhhcccCCchhhhhhHHHHh
Q 042183           31 DPNLFKAAAAGNLEPFKDMAREEILEICPSLLLQVNAKGDSRSLLVAAKFGHCDIVSVLIERAKLLQHEDEELESGMIRM  110 (179)
Q Consensus        31 ~~~l~~A~~~g~~~~~~~ll~~~~~~~~~~~~~~~~~~g~t~~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~~~~~~~~  110 (179)
                      .++|+.|++.|+.+.++.+..   +...+..++.+|..|+| |||+||++|+.++|++|+++|++.+.          ..
T Consensus        91 ~t~L~~Aa~~g~~~~~~~~~~---L~~~~~~in~~~~~g~t-aL~~Aa~~G~~~~v~~Ll~~g~~~~~----------~~  156 (346)
T d2ajaa1          91 EVICFVAAITGCSSALDTLCL---LLTSDEIVKVIQAENYQ-AFRLAAENGHLHVLNRLCELAPTEIM----------AM  156 (346)
T ss_dssp             HHHHHHHHHHCCHHHHHHHTT---C--CCSSCC--CHHHHH-HHHHHHHTTCHHHHHHHHHSCTTTHH----------HH
T ss_pred             CcHHHHHHHhCCHHHHHHHHH---HHhCCCcccccCCCCCC-HHHHHHHCCCHHHHHHHHHcCCCccc----------cc
Confidence            478999999999988876421   22477888999999999 99999999999999999999986543          11


Q ss_pred             ccCCCCcHHHHHHHcCCHHHHHHHHhcCCCCC--CCCCCCCCCHHHHHHHhcCCHHHHHHHHhcCCCC
Q 042183          111 MNKEKHTALHEAVFHKIVDVVKILTREDLDYP--YSANNYNKTPLCMVAEYEHSSHMVVAILKNCTSV  176 (179)
Q Consensus       111 ~~~~g~t~l~~A~~~g~~~~~~~Ll~~~~~~~--~~~~~~g~tpl~~A~~~~~~~~~~~~Ll~~g~~~  176 (179)
                      .+.+|+||||+|+..|+.+++++|++.|++..  +..+..+.||++.|+. +|+.+++++|++.|+++
T Consensus       157 ~~~~g~t~L~~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~~~~~t~l~~A~~-~g~~~iv~~Ll~~ga~~  223 (346)
T d2ajaa1         157 IQAENYHAFRLAAENGHLHVLNRLCELAPTEATAMIQAENYYAFRWAAVG-RGHHNVINFLLDCPVML  223 (346)
T ss_dssp             HSHHHHHHHHHHHHTTCHHHHHHHHHSCGGGHHHHHHHHHHHHHHHHHST-TCCHHHHHHHTTSHHHH
T ss_pred             cccCCCChhHHHHHHhhHHHHHHHHHcCCcccccccccCCCcchhhHHhh-cCHHHHHHHHHhCCCCc
Confidence            23468999999999999999999999987632  1233456678888999 99999999999988653

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.86  E-value=9.9e-21  Score=142.26  Aligned_cols=145  Identities=20%  Similarity=0.228  Sum_probs=118.5

Q ss_pred             ccccCCHHHHHHHHcCChHHHHHHHHHHHHhhCcccccccCCCCCcHHHHHHHHcCCHHHHHHHHHhhcccCCchhh---
Q 042183           26 SQLQIDPNLFKAAAAGNLEPFKDMAREEILEICPSLLLQVNAKGDSRSLLVAAKFGHCDIVSVLIERAKLLQHEDEE---  102 (179)
Q Consensus        26 ~~~~~~~~l~~A~~~g~~~~~~~ll~~~~~~~~~~~~~~~~~~g~t~~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~---  102 (179)
                      ......++++.++.....+....++.      ........+..|.| ||++|+..+..+++++++..+...+.....   
T Consensus       194 ~~~~~~t~l~~~~~~~~~~~~~~l~~------~~~~~~~~~~~~~t-~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~g~~  266 (408)
T d1n11a_         194 PAWNGYTPLHIAAKQNQVEVARSLLQ------YGGSANAESVQGVT-PLHLAAQEGHAEMVALLLSKQANGNLGNKSGLT  266 (408)
T ss_dssp             CCTTCCCHHHHHHHTTCHHHHHHHHH------TTCCTTCCCTTCCC-HHHHHHHTTCHHHHHHHHTTTCCTTCCCTTCCC
T ss_pred             cCCCCCCcchhhhccchhhhhhhhhh------ccccccccCCCCCC-HHHHHHHhCcHhHhhhhhccccccccccCCCCC
Confidence            34445689999999999999988876      44555667888999 999999999999999999988766552211   


Q ss_pred             ------------------hhhHHHHhccCCCCcHHHHHHHcCCHHHHHHHHhcCCCCCCCCCCCCCCHHHHHHHhcCCHH
Q 042183          103 ------------------LESGMIRMMNKEKHTALHEAVFHKIVDVVKILTREDLDYPYSANNYNKTPLCMVAEYEHSSH  164 (179)
Q Consensus       103 ------------------~~~~~~~~~~~~g~t~l~~A~~~g~~~~~~~Ll~~~~~~~~~~~~~g~tpl~~A~~~~~~~~  164 (179)
                                        ..+..++..+..+.||||.++..++.++++++++.|++++ .+|..|.||||+|+. .|+.+
T Consensus       267 ~l~~a~~~~~~~i~~~Ll~~g~~~~~~~~~~~t~L~~~~~~~~~~~~~~ll~~g~~in-~~d~~G~T~Lh~A~~-~g~~~  344 (408)
T d1n11a_         267 PLHLVAQEGHVPVADVLIKHGVMVDATTRMGYTPLHVASHYGNIKLVKFLLQHQADVN-AKTKLGYSPLHQAAQ-QGHTD  344 (408)
T ss_dssp             HHHHHHHHTCHHHHHHHHHHTCCTTCCCSSCCCHHHHHHHSSCSHHHHHHHHTTCCTT-CCCTTSCCHHHHHHH-TTCHH
T ss_pred             hhhhhhhcCcHHHHHHHHHCCCccccccccccccchhhcccCcceeeeeecccccccc-ccCCCCCCHHHHHHH-cCCHH
Confidence                              1112234556678889999999999999999999999976 899999999999999 99999


Q ss_pred             HHHHHHhcCCCCCCC
Q 042183          165 MVVAILKNCTSVSHR  179 (179)
Q Consensus       165 ~~~~Ll~~g~~~~~r  179 (179)
                      ++++|+++|++++.+
T Consensus       345 iv~~Ll~~GAd~n~~  359 (408)
T d1n11a_         345 IVTLLLKNGASPNEV  359 (408)
T ss_dssp             HHHHHHHTTCCSCCC
T ss_pred             HHHHHHHCCCCCCCC
Confidence            999999999998753

>d1iknd_ d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: I-kappa-B-alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.86  E-value=2.5e-21  Score=134.95  Aligned_cols=91  Identities=14%  Similarity=0.123  Sum_probs=77.0

Q ss_pred             CHHHHHHHHcCChHHHHHHHHHHHHhhCcccccc-cCCCCCcHHHHHHHHcCCHHHHHHHHHhhcccCCchhhhhhHHHH
Q 042183           31 DPNLFKAAAAGNLEPFKDMAREEILEICPSLLLQ-VNAKGDSRSLLVAAKFGHCDIVSVLIERAKLLQHEDEELESGMIR  109 (179)
Q Consensus        31 ~~~l~~A~~~g~~~~~~~ll~~~~~~~~~~~~~~-~~~~g~t~~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~~~~~~~  109 (179)
                      .++||.|+..++.+.++.++.      .+..++. .+..|.| |||+|+..|+.+++++|+++|++++.           
T Consensus       112 ~t~l~~a~~~~~~~~~~~l~~------~~~~~~~~~~~~G~T-~L~~A~~~g~~~~v~~Ll~~gad~~~-----------  173 (221)
T d1iknd_         112 HTCLHLASIHGYLGIVELLVS------LGADVNAQEPCNGRT-ALHLAVDLQNPDLVSLLLKCGADVNR-----------  173 (221)
T ss_dssp             CCHHHHHHHTTCHHHHHHHHH------HTCCTTCCCTTTCCC-HHHHHHHTTCHHHHHHHHTTTCCSCC-----------
T ss_pred             chhhhHHhhcCChhheeeecc------cCcccccccccCCCC-ccccccccccHHHHHHHHhcCCcccc-----------
Confidence            467888888888888877765      3334444 4567999 99999999999999999999998888           


Q ss_pred             hccCCCCcHHHHHHHcCCHHHHHHHHhcCCC
Q 042183          110 MMNKEKHTALHEAVFHKIVDVVKILTREDLD  140 (179)
Q Consensus       110 ~~~~~g~t~l~~A~~~g~~~~~~~Ll~~~~~  140 (179)
                       +|..|+||||+|+..++.+++++|++.+.+
T Consensus       174 -~~~~G~tpl~~A~~~~~~~~~~~l~~~~~~  203 (221)
T d1iknd_         174 -VTYQGYSPYQLTWGRPSTRIQQQLGQLTLE  203 (221)
T ss_dssp             -CCTTCCCGGGGCTTSSCHHHHHHHHTTSCG
T ss_pred             -cCCCCCCHHHHHHHCCCHHHHHHHHHcCCc
Confidence             999999999999999999999999987544

>d1bi7b_ d.211.1.1 (B:) Cell cycle inhibitor p16ink4A {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Cell cycle inhibitor p16ink4A
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.84  E-value=3.8e-21  Score=122.87  Aligned_cols=94  Identities=16%  Similarity=0.114  Sum_probs=85.3

Q ss_pred             CCcHHHHHHHHcCCHHHHHHHHHhhcccCCchhhhhhHHHHhccCCCCcHHHHHHHcCCHHHHHHHHhcCCCCCCCCCCC
Q 042183           69 GDSRSLLVAAKFGHCDIVSVLIERAKLLQHEDEELESGMIRMMNKEKHTALHEAVFHKIVDVVKILTREDLDYPYSANNY  148 (179)
Q Consensus        69 g~t~~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~~~~~~~~~~~~g~t~l~~A~~~g~~~~~~~Ll~~~~~~~~~~~~~  148 (179)
                      +.+ +||+|+.+|+.+++++|+++|++++.            ++..|.||+|+|+ .|+.+++++|++.|++++ ..+..
T Consensus         3 ~~~-~L~~Aa~~G~~~~v~~Ll~~gad~n~------------~~~~g~t~l~~a~-~g~~~~v~~Ll~~ga~~~-~~~~~   67 (125)
T d1bi7b_           3 SAD-WLATAAARGRVEEVRALLEAGANPNA------------PNSYGRRPIQVMM-MGSARVAELLLLHGAEPN-CADPA   67 (125)
T ss_dssp             STT-HHHHHHHHTCHHHHHHHHTTTCCTTC------------CCSSSCCTTTSSC-TTCHHHHHHHHTTTCCCC-CCCTT
T ss_pred             Chh-HHHHHHHCCCHHHHHHHHHcCCcccc------------ccccccccccccc-cccccccccccccccccc-ccccc
Confidence            456 99999999999999999999998887            9999999999775 799999999999999986 67777


Q ss_pred             CC-CHHHHHHHhcCCHHHHHHHHhcCCCCCC
Q 042183          149 NK-TPLCMVAEYEHSSHMVVAILKNCTSVSH  178 (179)
Q Consensus       149 g~-tpl~~A~~~~~~~~~~~~Ll~~g~~~~~  178 (179)
                      +. ||||+|+. .|+.+++++|+++|++++.
T Consensus        68 ~~~~~L~~A~~-~g~~~~v~~Ll~~ga~~~~   97 (125)
T d1bi7b_          68 TLTRPVHDAAR-EGFLDTLVVLHRAGARLDV   97 (125)
T ss_dssp             TCCCHHHHHHH-HTCHHHHHHHHHHTCCSSC
T ss_pred             ccccccccccc-ccccccccccccccccccc
Confidence            65 69999999 9999999999999998864

>d1s70b_ d.211.1.1 (B:) Myosin phosphatase targeting subunit 1, MYPT1 {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myosin phosphatase targeting subunit 1, MYPT1
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=99.84  E-value=1e-20  Score=136.57  Aligned_cols=91  Identities=20%  Similarity=0.246  Sum_probs=80.9

Q ss_pred             ccccCCCCCcHHHHHHHHcCCHHHHHHHHHhhcccCCchhhhhhHHHHhccCCCCcHHHHHHHcCCHHHHHHHHhcCCCC
Q 042183           62 LLQVNAKGDSRSLLVAAKFGHCDIVSVLIERAKLLQHEDEELESGMIRMMNKEKHTALHEAVFHKIVDVVKILTREDLDY  141 (179)
Q Consensus        62 ~~~~~~~g~t~~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~~~~~~~~~~~~g~t~l~~A~~~g~~~~~~~Ll~~~~~~  141 (179)
                      ....+..|.| |||+|+..|+.+++++|++.|++++.            ++..|+||||+|+..|+.+++++|+++|+++
T Consensus       192 ~~~~~~~g~t-~L~~a~~~~~~~~~~~Ll~~g~din~------------~~~~g~TpL~~A~~~g~~~iv~lLl~~Gadv  258 (291)
T d1s70b_         192 DVRHAKSGGT-ALHVAAAKGYTEVLKLLIQARYDVNI------------KDYDGWTPLHAAAHWGKEEACRILVENLCDM  258 (291)
T ss_dssp             CCCCTTTCCC-HHHHHHHHTCHHHHHHHHTTTCCTTC------------CCTTCCCHHHHHHHTTCHHHHHHHHHTTCCT
T ss_pred             cccccCCCCC-hhhHHHHcCChhhhcccccceecccc------------cccCCCCHHHHHHHcCCHHHHHHHHHCCCCC
Confidence            3456778999 99999999999999999999998877            8999999999999999999999999999998


Q ss_pred             CCCCCCCCCCHHHHHHHhcCCHHHHHHHHh
Q 042183          142 PYSANNYNKTPLCMVAEYEHSSHMVVAILK  171 (179)
Q Consensus       142 ~~~~~~~g~tpl~~A~~~~~~~~~~~~Ll~  171 (179)
                      + .+|..|.||||+|+. .    ++++|.+
T Consensus       259 ~-~~d~~G~TaL~~A~e-~----~~~~L~~  282 (291)
T d1s70b_         259 E-AVNKVGQTAFDVADE-D----ILGYLEE  282 (291)
T ss_dssp             T-CCCTTSCCTTTSCCS-G----GGHHHHH
T ss_pred             C-CcCCCCCCHHHHHHH-H----HHHHHHH
Confidence            6 899999999999976 3    5555544

>d1sw6a_ d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Swi6 ankyrin-repeat fragment
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.83  E-value=2.2e-20  Score=135.99  Aligned_cols=132  Identities=17%  Similarity=0.122  Sum_probs=94.7

Q ss_pred             cCCHHHHHHHHcCChHHHHHHHHHHHHhhCcccccccCCCCCcHHHHHHHHcCCH---HHHHHHHHhhcccCCchhhhhh
Q 042183           29 QIDPNLFKAAAAGNLEPFKDMAREEILEICPSLLLQVNAKGDSRSLLVAAKFGHC---DIVSVLIERAKLLQHEDEELES  105 (179)
Q Consensus        29 ~~~~~l~~A~~~g~~~~~~~ll~~~~~~~~~~~~~~~~~~g~t~~L~~A~~~g~~---~~v~~ll~~~~~~~~~~~~~~~  105 (179)
                      ...+|||+||..|+.++|+.|++      .+..++.+|..|+| |||.||..++.   ..+..+++....          
T Consensus       106 ~G~T~LH~Aa~~g~~~~v~~Ll~------~gad~~~~d~~G~T-pL~~A~~~~~~~~~~~~~~ll~~l~~----------  168 (301)
T d1sw6a_         106 HGNTPLHWLTSIANLELVKHLVK------HGSNRLYGDNMGES-CLVKAVKSVNNYDSGTFEALLDYLYP----------  168 (301)
T ss_dssp             TCCCHHHHHHHTTCHHHHHHHHH------TTCCTTBCCTTCCC-HHHHHHHSSHHHHTTCHHHHHHHHGG----------
T ss_pred             CCCCHHHHHHHcCCHHHHHHHHH------CCCCCCcCCccccc-HHHHhhhcccchhhhhHHHHHHHHhh----------
Confidence            35589999999999999999988      67888999999999 99999987652   222333332211          


Q ss_pred             HHHHhccCCCCcHHHHHHHcCCH----H--------HHHHHHhcCCCC--------------------------------
Q 042183          106 GMIRMMNKEKHTALHEAVFHKIV----D--------VVKILTREDLDY--------------------------------  141 (179)
Q Consensus       106 ~~~~~~~~~g~t~l~~A~~~g~~----~--------~~~~Ll~~~~~~--------------------------------  141 (179)
                       .+..+|..|+||||.++..+..    .        ++.++++.+...                                
T Consensus       169 -~~~~~d~~g~t~lh~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  247 (301)
T d1sw6a_         169 -CLILEDSMNRTILHHIIITSGMTGCSAAAKYYLDILMGWIVKKQNRPIQSGTNEKESKPNDKNGERKDSILENLDLKWI  247 (301)
T ss_dssp             -GGGEECTTCCCHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHGGGCCEEEC----------------CHHHHHCSHHHH
T ss_pred             -hhhhcccccCCHHHHHHHHhCccccHHHHHHHHHHHHHHHHhcCCcchhcccccccchhHHHHhcchHHHHHHHhhHHH
Confidence             1223777889999987765442    2        223333332211                                


Q ss_pred             ----CCCCCCCCCCHHHHHHHhcCCHHHHHHHHhcCCCCCCC
Q 042183          142 ----PYSANNYNKTPLCMVAEYEHSSHMVVAILKNCTSVSHR  179 (179)
Q Consensus       142 ----~~~~~~~g~tpl~~A~~~~~~~~~~~~Ll~~g~~~~~r  179 (179)
                          .+.+|..|+||||+|++ .|+.+++++|+++|++++.+
T Consensus       248 ~~~~in~~D~~G~TpLh~A~~-~g~~~iv~~Ll~~GAd~~~~  288 (301)
T d1sw6a_         248 IANMLNAQDSNGDTCLNIAAR-LGNISIVDALLDYGADPFIA  288 (301)
T ss_dssp             HHHTTTCCCTTSCCHHHHHHH-HCCHHHHHHHHHTTCCTTCC
T ss_pred             HhcCccCCCCCCCCHHHHHHH-cCCHHHHHHHHHCCCCCCCC
Confidence                13678889999999999 99999999999999988653

>d1k1aa_ d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: bcl-3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.83  E-value=1.1e-20  Score=130.25  Aligned_cols=127  Identities=18%  Similarity=0.152  Sum_probs=107.5

Q ss_pred             ccccCCHHHHHHHHcCChHHHHHHHH------------------------------------------------------
Q 042183           26 SQLQIDPNLFKAAAAGNLEPFKDMAR------------------------------------------------------   51 (179)
Q Consensus        26 ~~~~~~~~l~~A~~~g~~~~~~~ll~------------------------------------------------------   51 (179)
                      ......+|||.|+..|+.++++.|++                                                      
T Consensus        36 ~d~~g~TpL~~A~~~~~~~iv~~Ll~~ga~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  115 (228)
T d1k1aa_          36 YNNLRQTPLHLAVITTLPSVVRLLVTAGASPMALDRHGQTAAHLACEHRSPTCLRALLDSAAPGTLDLEARNYDGLTALH  115 (228)
T ss_dssp             CCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHSCTTSCCTTCCCTTSCCHHH
T ss_pred             cCCCCCccceehhcccccccccccccccccccccccccccccccccccccccchhhhhhccccccccccccccccccccc
Confidence            34456789999999999999999998                                                      


Q ss_pred             -----------HHHHhhCcccccccCCCCCcHHHHHHHHcCCHHHHHHHHHhhcccCCchhhhhhHHHHhccCCCCcHHH
Q 042183           52 -----------EEILEICPSLLLQVNAKGDSRSLLVAAKFGHCDIVSVLIERAKLLQHEDEELESGMIRMMNKEKHTALH  120 (179)
Q Consensus        52 -----------~~~~~~~~~~~~~~~~~g~t~~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~~~~~~~~~~~~g~t~l~  120 (179)
                                 ..+..............|.+ +|+.|+..+...+++.+++++...+.            ++..|.||||
T Consensus       116 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~-~l~~a~~~~~~~~~~~~~~~~~~~~~------------~d~~g~t~L~  182 (228)
T d1k1aa_         116 VAVNTECQETVQLLLERGADIDAVDIKSGRS-PLIHAVENNSLSMVQLLLQHGANVNA------------QMYSGSSALH  182 (228)
T ss_dssp             HHHHHTCHHHHHHHHHTTCCTTCCCTTTCCC-HHHHHHHTTCHHHHHHHHHTTCCTTC------------BCTTSCBHHH
T ss_pred             cccccccchhhhhhhccccccccccccchhh-HHHHHHHhhhhhhhhhhhhhcccccc------------ccccCcchHH
Confidence                       22222223333445667888 99999999999999999999887776            8999999999


Q ss_pred             HHHHcCCHHHHHHHHhcCCCCCCCCCCCCCCHHHHHHHhcCCHHHHH
Q 042183          121 EAVFHKIVDVVKILTREDLDYPYSANNYNKTPLCMVAEYEHSSHMVV  167 (179)
Q Consensus       121 ~A~~~g~~~~~~~Ll~~~~~~~~~~~~~g~tpl~~A~~~~~~~~~~~  167 (179)
                      +|+..|+.+++++|++.|++++ .+|.+|.||||+|+. +|+.+++|
T Consensus       183 ~A~~~g~~~~v~~Ll~~Gad~n-~~d~~G~TpL~~A~~-~~~~divk  227 (228)
T d1k1aa_         183 SASGRGLLPLVRTLVRSGADSS-LKNCHNDTPLMVARS-RRVIDILR  227 (228)
T ss_dssp             HHHHHTCHHHHHHHHHTTCCTT-CCCTTSCCTTTTCSS-HHHHHHHT
T ss_pred             HHHHcCCHHHHHHHHHCCCCCC-CCCCCCCCHHHHHHh-CCCccccC
Confidence            9999999999999999999986 899999999999999 99988874

>d1wdya_ d.211.1.1 (A:) RNase L, 2-5a-dependent ribonuclease {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: RNase L, 2-5a-dependent ribonuclease
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.83  E-value=1.5e-19  Score=129.80  Aligned_cols=140  Identities=21%  Similarity=0.205  Sum_probs=108.9

Q ss_pred             CCHHHHHHHHcCChHHHHHHHHHHHHhhCcccccccC-CCCCcHHHHHHHHcCCHHHHHHHHHhhcccCCchhh------
Q 042183           30 IDPNLFKAAAAGNLEPFKDMAREEILEICPSLLLQVN-AKGDSRSLLVAAKFGHCDIVSVLIERAKLLQHEDEE------  102 (179)
Q Consensus        30 ~~~~l~~A~~~g~~~~~~~ll~~~~~~~~~~~~~~~~-~~g~t~~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~------  102 (179)
                      .++.|+.|++.|++++|+.|++      .+..++.++ ..|.| |||+|+..|+.+++++|++.+.........      
T Consensus         5 ~~~~L~~Ai~~~~~e~vk~Ll~------~G~din~~~~~~g~t-pL~~A~~~~~~eiv~~L~~~~~~~~~~~~~~~~~~~   77 (285)
T d1wdya_           5 DNHLLIKAVQNEDVDLVQQLLE------GGANVNFQEEEGGWT-PLHNAVQMSREDIVELLLRHGADPVLRKKNGATPFL   77 (285)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHH------TTCCTTCCCTTTCCC-HHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHH
T ss_pred             CcHHHHHHHHcCCHHHHHHHHH------CCCCcCccCCCCCCC-HHHHHHHcCCHHHhhhhccccccccccccccchhhH
Confidence            3578999999999999999998      667777665 57899 999999999999999999988765442111      


Q ss_pred             ----------------------------------------------------------hhhHHHHhccCCCCcHHHHHHH
Q 042183          103 ----------------------------------------------------------LESGMIRMMNKEKHTALHEAVF  124 (179)
Q Consensus       103 ----------------------------------------------------------~~~~~~~~~~~~g~t~l~~A~~  124 (179)
                                                                                .........+..|.||||+|+.
T Consensus        78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~  157 (285)
T d1wdya_          78 LAAIAGSVKLLKLFLSKGADVNECDFYGFTAFMEAAVYGKVKALKFLYKRGANVNLRRKTKEDQERLRKGGATALMDAAE  157 (285)
T ss_dssp             HHHHHTCHHHHHHHHHTTCCTTCBCTTCCBHHHHHHHTTCHHHHHHHHHTTCCTTCCCCCCHHHHHTTCCCCCHHHHHHH
T ss_pred             HHhhcCCccccchhhhhcccccccccCCCchhHHHHHhcchhhhhhhhhhcccccccccchhhhhhhcccCchHHHHHHH
Confidence                                                                      0112223455678999999999


Q ss_pred             cCCHHHHHHHHhc-CC-------------------------------------CCCCCCCCCCCCHHHHHHHhcCCHHHH
Q 042183          125 HKIVDVVKILTRE-DL-------------------------------------DYPYSANNYNKTPLCMVAEYEHSSHMV  166 (179)
Q Consensus       125 ~g~~~~~~~Ll~~-~~-------------------------------------~~~~~~~~~g~tpl~~A~~~~~~~~~~  166 (179)
                      .|+.+++++|++. |+                                     +++ .++..|.||||.|+. .|+.+++
T Consensus       158 ~~~~~~~~~Ll~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~i~~~Li~~ga~~n-~~~~~g~t~L~~a~~-~~~~~~v  235 (285)
T d1wdya_         158 KGHVEVLKILLDEMGADVNACDNMGRNALIHALLSSDDSDVEAITHLLLDHGADVN-VRGERGKTPLILAVE-KKHLGLV  235 (285)
T ss_dssp             HTCHHHHHHHHHTSCCCTTCCCTTSCCHHHHHHHCSCTTTHHHHHHHHHHTTCCSS-CCCTTSCCHHHHHHH-TTCHHHH
T ss_pred             cCCHHHHHHHHhccCCCcccccCCCCcccccccccccchHHHHHHHHHHHCCCCCC-ccCCCCCCccchhhh-cCcHHHH
Confidence            9998888877754 33                                     322 456789999999999 9999999


Q ss_pred             HHHHhc-CCCCCC
Q 042183          167 VAILKN-CTSVSH  178 (179)
Q Consensus       167 ~~Ll~~-g~~~~~  178 (179)
                      ++|+++ |++++.
T Consensus       236 ~~lL~~~g~din~  248 (285)
T d1wdya_         236 QRLLEQEHIEIND  248 (285)
T ss_dssp             HHHHHSSSCCTTC
T ss_pred             HHHHHcCCCCCcC
Confidence            999985 788764

>d1dcqa1 d.211.1.1 (A:369-522) Pyk2-associated protein beta {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Pyk2-associated protein beta
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.81  E-value=2e-19  Score=118.58  Aligned_cols=93  Identities=16%  Similarity=0.121  Sum_probs=84.4

Q ss_pred             cCCHHHHHHHHc---CChHHHHHHHHHHHHhhCcccccccCCCCCcHHHHHHHHcCCHHHHHHHHHhhcccCCchhhhhh
Q 042183           29 QIDPNLFKAAAA---GNLEPFKDMAREEILEICPSLLLQVNAKGDSRSLLVAAKFGHCDIVSVLIERAKLLQHEDEELES  105 (179)
Q Consensus        29 ~~~~~l~~A~~~---g~~~~~~~ll~~~~~~~~~~~~~~~~~~g~t~~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~~~  105 (179)
                      ...++||.|++.   |..++++.|++      .+..++.+|..|.| |||+|+..|+.+++++|+++|++++.       
T Consensus        44 ~g~t~Lh~A~~~~~~~~~~iv~~Ll~------~gadin~~d~~g~T-pLh~A~~~~~~~~v~~Ll~~gad~~~-------  109 (154)
T d1dcqa1          44 PDETALHLAVRSVDRTSLHIVDFLVQ------NSGNLDKQTGKGST-ALHYCCLTDNAECLKLLLRGKASIEI-------  109 (154)
T ss_dssp             TTCBHHHHHHHHCCTTTHHHHHHHHH------HCSCTTCCCTTCCC-HHHHHHHTTCHHHHHHHHHTTCCTTC-------
T ss_pred             CCCchHHHHHHhcCCCCHHHHHHHHH------cCCChhhhhhhhcc-ccccccccccccccccccccCccccc-------
Confidence            356899999975   67889999987      56788999999999 99999999999999999999998887       


Q ss_pred             HHHHhccCCCCcHHHHHHHcCCHHHHHHHHhcCCC
Q 042183          106 GMIRMMNKEKHTALHEAVFHKIVDVVKILTREDLD  140 (179)
Q Consensus       106 ~~~~~~~~~g~t~l~~A~~~g~~~~~~~Ll~~~~~  140 (179)
                           +|..|+||||+|+..|+.+++++|++.++.
T Consensus       110 -----~d~~g~tpL~~A~~~~~~~i~~~L~~~~~~  139 (154)
T d1dcqa1         110 -----ANESGETPLDIAKRLKHEHCEELLTQALSG  139 (154)
T ss_dssp             -----CCTTSCCHHHHHHHTTCHHHHHHHHHHHTT
T ss_pred             -----cCCCCCCHHHHHHHcCCHHHHHHHHHhCCC
Confidence                 999999999999999999999999997654

>d2fo1e1 d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Lin-12
species: Caenorhabditis elegans [TaxId: 6239]

Probab=99.81  E-value=1.7e-21  Score=139.48  Aligned_cols=120  Identities=16%  Similarity=0.122  Sum_probs=94.3

Q ss_pred             HHHHHHHHcCChHHHHHHHHHHHHhhCcccccccC-CCCCcHHHHHHHHcCCHHHHHHHHH--------hhcccCCchhh
Q 042183           32 PNLFKAAAAGNLEPFKDMAREEILEICPSLLLQVN-AKGDSRSLLVAAKFGHCDIVSVLIE--------RAKLLQHEDEE  102 (179)
Q Consensus        32 ~~l~~A~~~g~~~~~~~ll~~~~~~~~~~~~~~~~-~~g~t~~L~~A~~~g~~~~v~~ll~--------~~~~~~~~~~~  102 (179)
                      +|||.+++.+..+.+..++.       ...++..+ ..|+| |||+||.+|+.+++++|+.        .|++++.    
T Consensus         2 ~p~~~~~~~~~~~~~~~~l~-------~~~~n~~~~~~g~T-~Lh~A~~~g~~~~v~~Ll~~~~~~~l~~Gadvn~----   69 (277)
T d2fo1e1           2 SPIKLHTEAAGSYAITEPIT-------RESVNIIDPRHNRT-VLHWIASNSSAEKSEDLIVHEAKECIAAGADVNA----   69 (277)
T ss_dssp             CCCHHHHHHHSSSCCCSCCS-------TTTTTTCCCSSCCC-HHHHHHCTTCCSCCTTHHHHHHHHHHHTCCCTTC----
T ss_pred             ChHHHHHHhCCCHHHHHHHH-------hcCCCcCCCCCCcc-HHHHHHHcCCHHHHHHHHhcchhHHHHcCCCccc----
Confidence            56665555444444433332       12334444 46999 9999999999998887754        4556665    


Q ss_pred             hhhHHHHhccCCCCcHHHHHHHcCCHHHHHHHHhcCCCCCCCCCCCCCCHHHHHHHhcCCHHHHHHHHhcC
Q 042183          103 LESGMIRMMNKEKHTALHEAVFHKIVDVVKILTREDLDYPYSANNYNKTPLCMVAEYEHSSHMVVAILKNC  173 (179)
Q Consensus       103 ~~~~~~~~~~~~g~t~l~~A~~~g~~~~~~~Ll~~~~~~~~~~~~~g~tpl~~A~~~~~~~~~~~~Ll~~g  173 (179)
                              +|.+|.||||+|+..|+.+++++|+++|++++ .++..|.||+++|+. .++.+++.++...+
T Consensus        70 --------~d~~G~TpLh~A~~~g~~~iv~~Ll~~Gad~n-~~~~~g~t~l~~a~~-~~~~~~~~~l~~~~  130 (277)
T d2fo1e1          70 --------MDCDENTPLMLAVLARRRRLVAYLMKAGADPT-IYNKSERSALHQAAA-NRDFGMMVYMLNST  130 (277)
T ss_dssp             --------CCTTSCCHHHHHHHHTCHHHHHHHHHTTCCSC-CCCTTCCCHHHHHHH-TTCHHHHHHHTTSH
T ss_pred             --------cCCCCCeeeccccccccccccccccccccccc-cccccccccccchhh-hcchhhhhhhhhcc
Confidence                    99999999999999999999999999999976 889999999999999 99999999887653

>d2ajaa1 a.118.24.1 (A:3-348) Hypothetical protein LPG2416 {Legionella pneumophila [TaxId: 446]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Pseudo ankyrin repeat-like
family: Pseudo ankyrin repeat
domain: Hypothetical protein LPG2416
species: Legionella pneumophila [TaxId: 446]

Probab=99.77  E-value=1.2e-20  Score=140.04  Aligned_cols=100  Identities=16%  Similarity=0.113  Sum_probs=84.9

Q ss_pred             cccccCCCCCcHHHHHHHHcCCHHHHHH---HHHhhcccCCchhhhhhHHHHhccCCCCcHHHHHHHcCCHHHHHHHHhc
Q 042183           61 LLLQVNAKGDSRSLLVAAKFGHCDIVSV---LIERAKLLQHEDEELESGMIRMMNKEKHTALHEAVFHKIVDVVKILTRE  137 (179)
Q Consensus        61 ~~~~~~~~g~t~~L~~A~~~g~~~~v~~---ll~~~~~~~~~~~~~~~~~~~~~~~~g~t~l~~A~~~g~~~~~~~Ll~~  137 (179)
                      .++.++..|.| |||+||.+|+.+++++   |++.|+.++.            ++.+|+||||+||..|+.++|++|++.
T Consensus        82 ~~~~~~~~~~t-~L~~Aa~~g~~~~~~~~~~L~~~~~~in~------------~~~~g~taL~~Aa~~G~~~~v~~Ll~~  148 (346)
T d2ajaa1          82 DAHKKGIKSEV-ICFVAAITGCSSALDTLCLLLTSDEIVKV------------IQAENYQAFRLAAENGHLHVLNRLCEL  148 (346)
T ss_dssp             HHHHHTCCHHH-HHHHHHHHCCHHHHHHHTTC--CCSSCC--------------CHHHHHHHHHHHHTTCHHHHHHHHHS
T ss_pred             HHHhccCCCCc-HHHHHHHhCCHHHHHHHHHHHhCCCcccc------------cCCCCCCHHHHHHHCCCHHHHHHHHHc
Confidence            34567889999 9999999999877765   7889888777            899999999999999999999999999


Q ss_pred             CCCCCCCCC--CCCCCHHHHHHHhcCCHHHHHHHHhcCCC
Q 042183          138 DLDYPYSAN--NYNKTPLCMVAEYEHSSHMVVAILKNCTS  175 (179)
Q Consensus       138 ~~~~~~~~~--~~g~tpl~~A~~~~~~~~~~~~Ll~~g~~  175 (179)
                      |++++ ..+  ..|.||||+|+. +|+.+++++|++.|++
T Consensus       149 g~~~~-~~~~~~~g~t~L~~Aa~-~g~~~iv~~Ll~~~~~  186 (346)
T d2ajaa1         149 APTEI-MAMIQAENYHAFRLAAE-NGHLHVLNRLCELAPT  186 (346)
T ss_dssp             CTTTH-HHHHSHHHHHHHHHHHH-TTCHHHHHHHHHSCGG
T ss_pred             CCCcc-ccccccCCCChhHHHHH-HhhHHHHHHHHHcCCc
Confidence            99865 443  468999999999 9999999999999864

>d1awcb_ d.211.1.1 (B:) GA bindinig protein (GABP) beta 1 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: GA bindinig protein (GABP) beta 1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.77  E-value=3.4e-18  Score=112.15  Aligned_cols=92  Identities=22%  Similarity=0.253  Sum_probs=75.0

Q ss_pred             cHHHHHHHHcCCHHHHHHHHHhhcccCCchhhhhhHHHHhccCCCCcHHHHHHHcCCHH---------------------
Q 042183           71 SRSLLVAAKFGHCDIVSVLIERAKLLQHEDEELESGMIRMMNKEKHTALHEAVFHKIVD---------------------  129 (179)
Q Consensus        71 t~~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~~~~~~~~~~~~g~t~l~~A~~~g~~~---------------------  129 (179)
                      | ||+.||+.|+.++|++|+++|++.+             .+..|+||||+|+..++.+                     
T Consensus         4 t-~L~~Aa~~g~~~~v~~LL~~ga~~~-------------~~~~g~t~L~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~   69 (153)
T d1awcb_           4 K-KLLEAARAGQDDEVRILMANGAPFT-------------TDWLGTSPLHLAAQYGHFSTTEVLLRAGVSRDARTKVDRT   69 (153)
T ss_dssp             H-HHHHHHHHTCHHHHHHHHHHTCCCC-------------CCTTCCCHHHHHHHHTCHHHHHHHHTTTCCTTCCCTTCCC
T ss_pred             H-HHHHHHHCCCHHHHHHHHHcCCCcc-------------cccCCCcccccccccccccccccccccccccccccccccc
Confidence            5 9999999999999999999998654             4566667777776666654                     


Q ss_pred             ------------HHHHHHhcCCCCCCCCCCCCCCHHHHHHHhcCCHHHHHHHHhcCCCCCC
Q 042183          130 ------------VVKILTREDLDYPYSANNYNKTPLCMVAEYEHSSHMVVAILKNCTSVSH  178 (179)
Q Consensus       130 ------------~~~~Ll~~~~~~~~~~~~~g~tpl~~A~~~~~~~~~~~~Ll~~g~~~~~  178 (179)
                                  ++++++..+++.. .++..|.||||+|+. .|+.+++++|++.|++++.
T Consensus        70 ~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~~g~T~L~~A~~-~g~~~iv~~ll~~gad~~~  128 (153)
T d1awcb_          70 PLHMAASEGHANIVEVLLKHGADVN-AKDMLKMTALHWATE-HNHQEVVELLIKYGADVHT  128 (153)
T ss_dssp             HHHHHHHHTCHHHHHHHHTTTCCTT-CCCTTSCCHHHHHHH-TTCHHHHHHHHHTTCCTTC
T ss_pred             ccccccccccceeeecccccCCccc-cccccCchHHHhhhh-cchhheeeeccccccCCcc
Confidence                        4555555566654 678899999999999 9999999999999999864

>d1ihba_ d.211.1.1 (A:) p18ink4C(ink6) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: p18ink4C(ink6)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.73  E-value=7.5e-18  Score=110.81  Aligned_cols=90  Identities=14%  Similarity=0.058  Sum_probs=75.8

Q ss_pred             HHHHHHHcCCHHHHHHHHHhhcccCCchhhhhhHHHHhccCCCCcHHHHHHHcCCHHHHHHHHhcCCCCCCCCCCCCCCH
Q 042183           73 SLLVAAKFGHCDIVSVLIERAKLLQHEDEELESGMIRMMNKEKHTALHEAVFHKIVDVVKILTREDLDYPYSANNYNKTP  152 (179)
Q Consensus        73 ~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~~~~~~~~~~~~g~t~l~~A~~~g~~~~~~~Ll~~~~~~~~~~~~~g~tp  152 (179)
                      +||+||..|+.+++++|+++|++++.            +|.+|+||||+|+ .|+.+++++|++.|+++. ..+..+.+|
T Consensus         4 ~Lh~Aa~~g~~~~v~~Ll~~g~d~n~------------~d~~g~TpL~~A~-~~~~ei~~~Ll~~~a~~~-~~~~~~~~~   69 (156)
T d1ihba_           4 ELASAAARGDLEQLTSLLQNNVNVNA------------QNGFGRTALQVMK-LGNPEIARRLLLRGANPD-LKDRTGFAV   69 (156)
T ss_dssp             HHHHHHHHTCHHHHHHHTTSCCCTTC------------CCTTSCCHHHHCC-SSCHHHHHHHHHTTCCTT-CCCTTSCCH
T ss_pred             HHHHHHHcCCHHHHHHHHHCCCCcCc------------cCCcccccccccc-cccccccccccccccccc-cccccCccc
Confidence            99999999999999999999998887            8999999999886 789999999999998865 677777777


Q ss_pred             HHHHHHhcCCHHHHHHHHhcCCCCC
Q 042183          153 LCMVAEYEHSSHMVVAILKNCTSVS  177 (179)
Q Consensus       153 l~~A~~~~~~~~~~~~Ll~~g~~~~  177 (179)
                      ++.++. .++.+++..|+..+.+++
T Consensus        70 l~~~~~-~~~~~~~~~l~~~~~~~~   93 (156)
T d1ihba_          70 IHDAAR-AGFLDTLQTLLEFQADVN   93 (156)
T ss_dssp             HHHHHH-HTCHHHHHHHHHTTCCTT
T ss_pred             cccccc-cccccccccccccccccc
Confidence            777777 777777777777665543

>d1bd8a_ d.211.1.1 (A:) Cell cycle inhibitor p19ink4D {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Cell cycle inhibitor p19ink4D
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.68  E-value=2.3e-16  Score=103.85  Aligned_cols=87  Identities=23%  Similarity=0.254  Sum_probs=69.0

Q ss_pred             CHHHHHHHHcCChHHHHHHHHHHHHhhCcccccccCCCCCcHHHHHHHHcCCHHHHHHHHHhhcccCCchhhhhhHHHHh
Q 042183           31 DPNLFKAAAAGNLEPFKDMAREEILEICPSLLLQVNAKGDSRSLLVAAKFGHCDIVSVLIERAKLLQHEDEELESGMIRM  110 (179)
Q Consensus        31 ~~~l~~A~~~g~~~~~~~ll~~~~~~~~~~~~~~~~~~g~t~~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~~~~~~~~  110 (179)
                      .++++.++..++.+.++.+++      .+..++.+|..|.| |||+|+..|+.+++++|+ .+++.+.            
T Consensus        69 ~~~l~~~~~~~~~~~~~~~l~------~~~~~n~~~~~~~t-~L~~A~~~~~~~i~~~L~-~~~~~~~------------  128 (156)
T d1bd8a_          69 TSPVHDAARTGFLDTLKVLVE------HGADVNVPDGTGAL-PIHLAVQEGHTAVVSFLA-AESDLHR------------  128 (156)
T ss_dssp             CCHHHHHHHTTCHHHHHHHHH------TTCCSCCCCTTSCC-HHHHHHHHTCHHHHHHHH-TTSCTTC------------
T ss_pred             ccccccccccccccccccccc------cccccccccCCCCe-eecccccccccccccccc-ccccccc------------
Confidence            345555555555555555544      45567888889999 999999999999999877 5676666            


Q ss_pred             ccCCCCcHHHHHHHcCCHHHHHHHHhc
Q 042183          111 MNKEKHTALHEAVFHKIVDVVKILTRE  137 (179)
Q Consensus       111 ~~~~g~t~l~~A~~~g~~~~~~~Ll~~  137 (179)
                      +|..|+||||+|+..|+.+++++|+++
T Consensus       129 ~d~~G~TpL~~A~~~g~~~iv~~Ll~h  155 (156)
T d1bd8a_         129 RDARGLTPLELALQRGAQDLVDILQGH  155 (156)
T ss_dssp             CCTTSCCHHHHHHHSCCHHHHHHHHTT
T ss_pred             cCCCCCCHHHHHHHcCCHHHHHHHHhh
Confidence            899999999999999999999999875

>d1sw6a_ d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Swi6 ankyrin-repeat fragment
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.68  E-value=4e-17  Score=118.57  Aligned_cols=124  Identities=15%  Similarity=0.093  Sum_probs=86.4

Q ss_pred             cccCCHHHHHHHHcCCh---HHHHHHHHHHHHhhCcccccccCCCCCcHHHHHHHHcCC----HH--------HHHHHHH
Q 042183           27 QLQIDPNLFKAAAAGNL---EPFKDMAREEILEICPSLLLQVNAKGDSRSLLVAAKFGH----CD--------IVSVLIE   91 (179)
Q Consensus        27 ~~~~~~~l~~A~~~g~~---~~~~~ll~~~~~~~~~~~~~~~~~~g~t~~L~~A~~~g~----~~--------~v~~ll~   91 (179)
                      .....+|||.|+..++.   ..+..+++     .....+..+|..|+| |||+++..+.    ..        ++.+++.
T Consensus       137 d~~G~TpL~~A~~~~~~~~~~~~~~ll~-----~l~~~~~~~d~~g~t-~lh~~~~~~~~~~~~~~~~~~~~~~~~~l~~  210 (301)
T d1sw6a_         137 DNMGESCLVKAVKSVNNYDSGTFEALLD-----YLYPCLILEDSMNRT-ILHHIIITSGMTGCSAAAKYYLDILMGWIVK  210 (301)
T ss_dssp             CTTCCCHHHHHHHSSHHHHTTCHHHHHH-----HHGGGGGEECTTCCC-HHHHHHHHHTSTTCHHHHHHHHHHHHHHHHH
T ss_pred             CcccccHHHHhhhcccchhhhhHHHHHH-----HHhhhhhhcccccCC-HHHHHHHHhCccccHHHHHHHHHHHHHHHHh
Confidence            34467999999987752   22333333     122345778999999 9999886543    22        3344444


Q ss_pred             hhcccCCchhh-------------------------hhhHHHHhccCCCCcHHHHHHHcCCHHHHHHHHhcCCCCCCCCC
Q 042183           92 RAKLLQHEDEE-------------------------LESGMIRMMNKEKHTALHEAVFHKIVDVVKILTREDLDYPYSAN  146 (179)
Q Consensus        92 ~~~~~~~~~~~-------------------------~~~~~~~~~~~~g~t~l~~A~~~g~~~~~~~Ll~~~~~~~~~~~  146 (179)
                      .+.........                         .....++.+|..|+||||+|++.|+.+++++|++.|+++. .+|
T Consensus       211 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~in~~D~~G~TpLh~A~~~g~~~iv~~Ll~~GAd~~-~~n  289 (301)
T d1sw6a_         211 KQNRPIQSGTNEKESKPNDKNGERKDSILENLDLKWIIANMLNAQDSNGDTCLNIAARLGNISIVDALLDYGADPF-IAN  289 (301)
T ss_dssp             GGGCCEEEC----------------CHHHHHCSHHHHHHHTTTCCCTTSCCHHHHHHHHCCHHHHHHHHHTTCCTT-CCC
T ss_pred             cCCcchhcccccccchhHHHHhcchHHHHHHHhhHHHHhcCccCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCC-CCC
Confidence            44332111000                         1222367889999999999999999999999999999976 899


Q ss_pred             CCCCCHHHHHH
Q 042183          147 NYNKTPLCMVA  157 (179)
Q Consensus       147 ~~g~tpl~~A~  157 (179)
                      ..|+|||++|+
T Consensus       290 ~~G~Tpl~~A~  300 (301)
T d1sw6a_         290 KSGLRPVDFGA  300 (301)
T ss_dssp             TTSCCGGGGTC
T ss_pred             CCCCCHHHHcC
Confidence            99999999985