Citrus Sinensis ID: 042186

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50-------
Protein Sequence
MYLLFETADCGFGILCEPDIMFHLEKSISYCRKRSWTGVWQSKVKHSAANKLMEKTS
Secondary Structure (PSIPRED)
cEEEEEEcccccEEEEcccEEEEEHHHHHHHHHccccEEEHHHHHHHHHHHHHHHcc
Secondary Structure Prediction (SSPRO)
cEEEEEEccccccEccccHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHccc
Coil and Loop (DISEMBL)
MYLLFETadcgfgilcepdIMFHLEKSISYCrkrswtgvwqSKVKHSAANKLMEKTS
Flexible Loop (DISEMBL)
MYLLFETADCGFGILCEPDIMFHLEKSISYCRKrswtgvwqskvkhsaanklmekts
Low Complexity Region (SEG)
MYLLFETADCGFGILCEPDIMFHLEKSISYCRKRSWTGVWQSKVKHSAANKLMEKTS
Disordered region (IsUnstruct)
*YLLFETADCGFGILCEPDIMFHLEKSISYCRKRSWTGVWQSK**************
Disordered Region (DISOPRED)
MYLLFETADCGFGILCEPDIMFHLEKSISYCRKRSWTGVWQSKVK*****K******
Disordered Region (DISEMBL)
MYLLFETADCGFGILCEPDIMFHLEKSISYCRKRSWTGVWQS***************
Disordered Region (DISPRO)
MYLLFETADCGFGILCEPDIMFHLEKSISYCRKRSWTGVWQSKVKHS**********
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
oooooooooooohhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
oooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MYLLFETADCGFGILCEPDIMFHLEKSISYCRKRSWTGVWQSKVKHSAANKLMEKTS
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

No hits with e-value below 0.001 by BLAST

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

No hits with e-value below 0.001 by BLAST

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Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	57
TAIR|locus:2051905	143	AT2G19790 [Arabidopsis thalian	0.964	0.384	0.421	0.00035

TAIR|locus:2051905 AT2G19790 [Arabidopsis thaliana (taxid:3702)]

 Score = 88 (36.0 bits), Expect = 0.00035, P = 0.00035
 Identities = 24/57 (42%), Positives = 32/57 (56%)

Query:     1 MYLLFETADCGFGILCEPDIMFHLEKSISYCRKRSWTG--VWQSKVKHSAANKLMEK 55
             ++LL ET D  FG +CE DIMFHLEK+     +    G  V  SK    +  +LM+K
Sbjct:    85 IHLLVETMDKHFGNVCELDIMFHLEKAHFMLEEMVMNGCIVETSKANILSPIQLMDK 141


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.323   0.133   0.437    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0       57        57   0.00091  102 3  11 22  0.45    27
                                                     29  0.44    27


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  1
  No. of states in DFA:  553 (59 KB)
  Total size of DFA:  108 KB (2073 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  6.53u 0.20s 6.73t   Elapsed:  00:00:01
  Total cpu time:  6.53u 0.20s 6.73t   Elapsed:  00:00:01
  Start:  Mon May 20 22:27:43 2013   End:  Mon May 20 22:27:44 2013

GO:0005794 "Golgi apparatus" evidence=ISM

GO:0006810 "transport" evidence=IEA

GO:0006886 "intracellular protein transport" evidence=ISS

GO:0008565 "protein transporter activity" evidence=IEA

GO:0015031 "protein transport" evidence=IEA

GO:0030125 "clathrin vesicle coat" evidence=ISS

GO:0006301 "postreplication repair" evidence=RCA

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Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

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Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

No confident hit detected by STRING

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Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	57
COG5030	152	APS2 Clathrin adaptor complex, small subunit [Intr	99.95
KOG0935	143	consensus Clathrin adaptor complex, small subunit	99.94
KOG0934	145	consensus Clathrin adaptor complex, small subunit	99.93
KOG0936	182	consensus Clathrin adaptor complex, small subunit	99.91
PF01217	141	Clat_adaptor_s: Clathrin adaptor complex small cha	99.68
KOG2740	418	consensus Clathrin-associated protein medium chain	87.5
KOG3343	175	consensus Vesicle coat complex COPI, zeta subunit	84.33

>COG5030 APS2 Clathrin adaptor complex, small subunit [Intracellular trafficking and secretion]

Probab=99.95  E-value=6.9e-29  Score=162.20  Aligned_cols=56  Identities=20%  Similarity=0.211  Sum_probs=53.9

Q ss_pred             CceeeeecccccCccchhhhhccHHHHHHHHHhc--CceeeeecHHHHHHHHHhhhhc
Q 042186            1 MYLLFETADCGFGILCEPDIMFHLEKSISYCRKR--SWTGVWQSKVKHSAANKLMEKT   56 (57)
Q Consensus         1 Ih~~VE~LD~~F~nVcElDiifnf~k~~~ilDE~--~G~v~Etsk~~il~~i~~~~~~   56 (57)
                      ||+|||+||||||||||||+||||.|+|.|||||  ||+++|+|+++|++++.++++.
T Consensus        84 Ih~FVE~lDr~FgnVCELdlIFNF~kv~~ILdE~i~gG~i~Es~~~~vl~~v~~lda~  141 (152)
T COG5030          84 IHNFVEILDRFFGNVCELDLIFNFQKVYAILDEMILGGEIIESSKNEVLEHVYALDAE  141 (152)
T ss_pred             HHHHHHHHHHHhccceeeEeEeeHHHHHHHHHHHHhCCeeeecCHHHHHHHHHHHHhh
Confidence            7999999999999999999999999999999999  9999999999999999888765

>KOG0935 consensus Clathrin adaptor complex, small subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.94  E-value=3.4e-29  Score=161.59  Aligned_cols=57  Identities=21%  Similarity=0.190  Sum_probs=55.3

Q ss_pred             CceeeeecccccCccchhhhhccHHHHHHHHHhc--CceeeeecHHHHHHHHHhhhhcC
Q 042186            1 MYLLFETADCGFGILCEPDIMFHLEKSISYCRKR--SWTGVWQSKVKHSAANKLMEKTS   57 (57)
Q Consensus         1 Ih~~VE~LD~~F~nVcElDiifnf~k~~~ilDE~--~G~v~Etsk~~il~~i~~~~~~~   57 (57)
                      ||+|||+||.|||||||||++|||.|+|.|+|||  ||+++||||+.+++++..++++.
T Consensus        85 IHlFVEvLd~fF~NVCELDlvFNFyKVy~i~DEm~l~GEi~Etsk~~vlerl~~L~~Le  143 (143)
T KOG0935|consen   85 IHLFVEVLDEFFHNVCELDLVFNFYKVYTIVDEMFLAGEIRETSKTKVLERLLMLQSLE  143 (143)
T ss_pred             HHHHHHHHHHHhccccceeeeeeeeeHHHHHHHHHHhhhhhhhhHHHHHHHHHHHhccC
Confidence            7999999999999999999999999999999999  99999999999999999999874

>KOG0934 consensus Clathrin adaptor complex, small subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.93  E-value=2.8e-28  Score=158.64  Aligned_cols=56  Identities=25%  Similarity=0.154  Sum_probs=53.6

Q ss_pred             CceeeeecccccCccchhhhhccHHHHHHHHHhc--CceeeeecHHHHHHHHHhhhhc
Q 042186            1 MYLLFETADCGFGILCEPDIMFHLEKSISYCRKR--SWTGVWQSKVKHSAANKLMEKT   56 (57)
Q Consensus         1 Ih~~VE~LD~~F~nVcElDiifnf~k~~~ilDE~--~G~v~Etsk~~il~~i~~~~~~   56 (57)
                      ||+|||+||+|||||||||+||||+|||+||||+  +|+++|+|++.+++++.+++-+
T Consensus        84 IH~~vE~lDkYFg~VCELDiiFNfekay~ILde~~~~g~~~e~~k~~~~~~i~~ad~l  141 (145)
T KOG0934|consen   84 IHNYVELLDKYFGSVCELDIIFNFEKAYFILDEFLLGGEIQETSKNDVLKAIAQADLL  141 (145)
T ss_pred             HHHHHHHHHHHhccceeeEEEEehHhHHHHHHHHhcCcchHhhhcccHHHHHHHhhhc
Confidence            7999999999999999999999999999999999  9999999999999999888754

>KOG0936 consensus Clathrin adaptor complex, small subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.91  E-value=1.2e-25  Score=149.55  Aligned_cols=56  Identities=21%  Similarity=0.188  Sum_probs=54.4

Q ss_pred             CceeeeecccccCccchhhhhccHHHHHHHHHhc--CceeeeecHHHHHHHHHhhhhc
Q 042186            1 MYLLFETADCGFGILCEPDIMFHLEKSISYCRKR--SWTGVWQSKVKHSAANKLMEKT   56 (57)
Q Consensus         1 Ih~~VE~LD~~F~nVcElDiifnf~k~~~ilDE~--~G~v~Etsk~~il~~i~~~~~~   56 (57)
                      ||.|||+|||||+|||||||||||+|+|+||+|+  ||+|.|||.++|++++.++.|+
T Consensus        90 IQvfVEtLDkCF~nVcELDliF~~~k~h~iL~EiV~GGmVlETn~neIv~av~~~nkl  147 (182)
T KOG0936|consen   90 IQVFVETLDKCFENVCELDLIFNWQKVHAILAEIVMGGMVLETNMNEIVAAVDEQNKL  147 (182)
T ss_pred             HHHHHHHHHHHHHhhhhhhheeeHHHHHHHHHHHHhCCeEEeccHHHHHHHHHHhchh
Confidence            7899999999999999999999999999999999  9999999999999999998875

>PF01217 Clat_adaptor_s: Clathrin adaptor complex small chain; InterPro: IPR022775 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=99.68  E-value=8.1e-18  Score=105.08  Aligned_cols=56  Identities=14%  Similarity=0.030  Sum_probs=50.3

Q ss_pred             CceeeeecccccCccchhhhhccHHHHHHHHHhc--CceeeeecHHHHHHHHHhhhhc
Q 042186            1 MYLLFETADCGFGILCEPDIMFHLEKSISYCRKR--SWTGVWQSKVKHSAANKLMEKT   56 (57)
Q Consensus         1 Ih~~VE~LD~~F~nVcElDiifnf~k~~~ilDE~--~G~v~Etsk~~il~~i~~~~~~   56 (57)
                      +|.+|++|+.|||+|||.++++||+++|.+||||  +|.++||+++.|++++.+++++
T Consensus        84 l~~~v~~l~~~~~~v~e~~i~~N~~~v~~~LDEiid~G~i~etd~~~I~~~v~~~~~~  141 (141)
T PF01217_consen   84 LHRLVEVLDDYFGNVSEKDILENFDLVYLILDEIIDGGIILETDPNVILKRVTMQDSA  141 (141)
T ss_dssp             HHHHHHHHHHHHSS-SHHHHHHTHHHHHHHHHHHEETTEES--THHHHHHHHHHCCC-
T ss_pred             HHHhhhhhhhhhccccHHHHHHCHHHHHHHHHHHHhCCEEEECCHHHHHHHHHHhhcC
Confidence            5889999999999999999999999999999999  9999999999999999998874

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. Clathrin coats contain both clathrin and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors []. All AP complexes are heterotetramers composed of two large subunits (adaptins), a medium subunit (mu) and a small subunit (sigma). Each subunit has a specific function. Adaptin subunits recognise and bind to clathrin through their hinge region (clathrin box), and recruit accessory proteins that modulate AP function through their C-terminal appendage domains. By contrast, GGAs are monomers composed of four domains, which have functions similar to AP subunits: an N-terminal VHS (Vps27p/Hrs/Stam) domain, a GAT (GGA and Tom1) domain, a hinge region, and a C-terminal GAE (gamma-adaptin ear) domain. The GAE domain is similar to the AP gamma-adaptin ear domain, being responsible for the recruitment of accessory proteins that regulate clathrin-mediated endocytosis []. While clathrin mediates endocytic protein transport from ER to Golgi, coatomers (COPI, COPII) primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the small sigma and mu subunits of various adaptins from different AP clathrin adaptor complexes (including AP1, AP2, AP3 and AP4), and the zeta and delta subunits of various coatomer (COP) adaptors. The small sigma subunit of AP proteins have been characterised in several species [, , , ]. The sigma subunit plays a role in protein sorting in the late-Golgi/trans-Golgi network (TGN) and/or endosomes. The zeta subunit of coatomers (zeta-COP) is required for coatomer binding to Golgi membranes and for coat-vesicle assembly [, ]. More information about these proteins can be found at Protein of the Month: Clathrin [].; PDB: 1W63_W 2JKR_I 2VGL_S 2JKT_I 2XA7_S 2HF6_A 3TJZ_C.

>KOG2740 consensus Clathrin-associated protein medium chain [Intracellular trafficking, secretion, and vesicular transport]

Probab=87.50  E-value=0.15  Score=38.38  Aligned_cols=42  Identities=12%  Similarity=-0.066  Sum_probs=34.8

Q ss_pred             ceeeeecccccCccchhhhhccHHHHHHHHHhc--CceeeeecH
Q 042186            2 YLLFETADCGFGILCEPDIMFHLEKSISYCRKR--SWTGVWQSK   43 (57)
Q Consensus         2 h~~VE~LD~~F~nVcElDiifnf~k~~~ilDE~--~G~v~Etsk   43 (57)
                      |+.+.++-.|||...|--|-=|+..+|.+||||  +|.=.-|-.
T Consensus        85 ~rv~dv~~eyFg~~s~~~Ik~N~~vv~ell~emiDnGfpl~tE~  128 (418)
T KOG2740|consen   85 HRVVDVLLEYFGGLSESKIKDNVVVVYELLDEMIDNGFPLVTEP  128 (418)
T ss_pred             HHHHHHHHHHhcccCHhHhhcceeeHHHHHHHHHHcCCCcccCh
Confidence            566778888999988999999999999999999  887443333

>KOG3343 consensus Vesicle coat complex COPI, zeta subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=84.33  E-value=0.55  Score=31.85  Aligned_cols=30  Identities=7%  Similarity=-0.155  Sum_probs=25.2

Q ss_pred             cHHHHHHHHHhc--CceeeeecHHHHHHHHHh
Q 042186           23 HLEKSISYCRKR--SWTGVWQSKVKHSAANKL   52 (57)
Q Consensus        23 nf~k~~~ilDE~--~G~v~Etsk~~il~~i~~   52 (57)
                      |.+-+-.++||+  ||-|.||.++.|..++..
T Consensus       114 N~D~i~L~~DEiiD~GvILEtdp~~ia~rv~~  145 (175)
T KOG3343|consen  114 NLDLIFLALDEIIDGGVILETDPNQIAQRVAL  145 (175)
T ss_pred             hhccceeehhhhccCceEEecCHHHHHHHhcc
Confidence            455566789999  999999999999988753

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Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	57
2vgl_S	142	AP-2 complex subunit sigma-1; cytoplasmic vesicle,	99.8
3tjz_C	153	Coatomer subunit zeta-1; protein trafficking, golg	99.79
1w63_Q	158	Adapter-related protein complex 1 sigma 1A subunit	99.76
2vgl_M	435	AP-2 complex subunit MU-1; cytoplasmic vesicle, al	99.48
1w63_M	423	Adaptor-related protein complex 1, MU 1 subunit; e	99.44

>2vgl_S AP-2 complex subunit sigma-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Mus musculus} SCOP: i.23.1.1 PDB: 2jkt_I 2jkr_I* 2xa7_S

Probab=99.80  E-value=1.1e-20  Score=117.93  Aligned_cols=57  Identities=16%  Similarity=0.129  Sum_probs=54.6

Q ss_pred             CceeeeecccccCccchhhhhccHHHHHHHHHhc--CceeeeecHHHHHHHHHhhhhcC
Q 042186            1 MYLLFETADCGFGILCEPDIMFHLEKSISYCRKR--SWTGVWQSKVKHSAANKLMEKTS   57 (57)
Q Consensus         1 Ih~~VE~LD~~F~nVcElDiifnf~k~~~ilDE~--~G~v~Etsk~~il~~i~~~~~~~   57 (57)
                      +|+|||+||+|||||||+||++||.++|.+||||  +|.++|||+.+|++++..++++.
T Consensus        84 L~~~ve~l~~yf~~v~E~~I~~Nf~~vy~lLDE~id~G~~~et~~~~il~~~~~~~~~~  142 (142)
T 2vgl_S           84 IHNFVEVLNEYFHNVCELDLVFNFYKVYTVVDEMFLAGEIRETSQTKVLKQLLMLQSLE  142 (142)
T ss_dssp             HHHHHHHHHHHTTSCCHHHHHHTHHHHHHHHHHHEETTEECCCCHHHHHHHHHHHHHCC
T ss_pred             HHHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHHHhCCEEEEcCHHHHHHHHHhhhccC
Confidence            5899999999999999999999999999999999  99999999999999999998863

>3tjz_C Coatomer subunit zeta-1; protein trafficking, golgi membrane, protein transport-prote binding complex; HET: GNP; 2.90A {Bos taurus} PDB: 2hf6_A

Probab=99.79  E-value=6.1e-21  Score=121.98  Aligned_cols=52  Identities=8%  Similarity=-0.041  Sum_probs=48.8

Q ss_pred             Cceeeeeccccc-CccchhhhhccHHHHHHHHHhc--CceeeeecHHHHHHHHHh
Q 042186            1 MYLLFETADCGF-GILCEPDIMFHLEKSISYCRKR--SWTGVWQSKVKHSAANKL   52 (57)
Q Consensus         1 Ih~~VE~LD~~F-~nVcElDiifnf~k~~~ilDE~--~G~v~Etsk~~il~~i~~   52 (57)
                      ||.|||+||+|| |||||+||++||+++|.+||||  +|.++|||++.|++++..
T Consensus        94 L~~~ve~l~~yf~~~v~E~~I~~Nf~~vy~lLDE~id~G~~~eT~~~~I~~~v~~  148 (153)
T 3tjz_C           94 LNCLFDSLSQMLRKNVEKRALLENMEGLFLAVDEIVDGGVILESDPQQVVHRVAL  148 (153)
T ss_dssp             HHHHHHHHHHHHTSCCCHHHHHHTHHHHHHHHHHHEETTEECCCCHHHHHHTC--
T ss_pred             HHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHcCCEeeeCCHHHHHHHHhc
Confidence            589999999999 9999999999999999999999  999999999999998864

>1w63_Q Adapter-related protein complex 1 sigma 1A subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1

Probab=99.76  E-value=9.5e-20  Score=115.99  Aligned_cols=55  Identities=25%  Similarity=0.182  Sum_probs=52.3

Q ss_pred             CceeeeecccccCccchhhhhccHHHHHHHHHhc--CceeeeecHHHHHHHHHhhhh
Q 042186            1 MYLLFETADCGFGILCEPDIMFHLEKSISYCRKR--SWTGVWQSKVKHSAANKLMEK   55 (57)
Q Consensus         1 Ih~~VE~LD~~F~nVcElDiifnf~k~~~ilDE~--~G~v~Etsk~~il~~i~~~~~   55 (57)
                      ||+|||+||+|||||||+||++||+++|.+||||  +|.++||+++.+.+.+...++
T Consensus        84 L~~~vevl~~yf~~v~E~~I~~Nf~~vy~lLDE~id~G~~~eT~~~~l~~~I~~~~~  140 (158)
T 1w63_Q           84 IHRYVELLDKYFGSVCELDIIFNFEKAYFILDEFLMGGDVQDTSKKSVLKAIEQADL  140 (158)
T ss_dssp             HHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHTTEETTEESCCCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHccCCHHHHHHhHHHHHHHHHHHHhCCEEEecCHHHHHHHHhcchh
Confidence            5899999999999999999999999999999999  999999999999999987665

>2vgl_M AP-2 complex subunit MU-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Rattus norvegicus} PDB: 2jkr_M 2jkt_M 2bp5_M* 2xa7_M

Probab=99.48  E-value=3.8e-15  Score=105.68  Aligned_cols=49  Identities=10%  Similarity=-0.010  Sum_probs=45.3

Q ss_pred             CceeeeecccccCccchhhhhccHHHHHHHHHhc--CceeeeecHHHHHHHH
Q 042186            1 MYLLFETADCGFGILCEPDIMFHLEKSISYCRKR--SWTGVWQSKVKHSAAN   50 (57)
Q Consensus         1 Ih~~VE~LD~~F~nVcElDiifnf~k~~~ilDE~--~G~v~Etsk~~il~~i   50 (57)
                      ||+|||+||.|||+|||+||++||+++|.+||||  +|.++||+++. |+..
T Consensus        82 L~~~v~vl~~yf~~v~E~~I~~Nf~~vy~lLDE~id~G~~~~t~~~~-l~~~  132 (435)
T 2vgl_M           82 LYKMCDVMAAYFGKISEENIKNNFVLIYELLDEILDFGYPQNSETGA-LKTF  132 (435)
T ss_dssp             HHHHHHHHHHHHSSCCHHHHHHTHHHHHHHHHHHEETTEECCCCHHH-HGGG
T ss_pred             HHHHHHHHHHHHhccCHHHHHHhHHHHHHHHHHHhcCCEEEecCHHH-HHHH
Confidence            5899999999999999999999999999999999  99999999985 4444

>1w63_M Adaptor-related protein complex 1, MU 1 subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1

Probab=99.44  E-value=2.2e-15  Score=106.61  Aligned_cols=51  Identities=10%  Similarity=-0.142  Sum_probs=46.9

Q ss_pred             CceeeeecccccCccchhhhhccHHHHHHHHHhc--CceeeeecHHHHHHHHH
Q 042186            1 MYLLFETADCGFGILCEPDIMFHLEKSISYCRKR--SWTGVWQSKVKHSAANK   51 (57)
Q Consensus         1 Ih~~VE~LD~~F~nVcElDiifnf~k~~~ilDE~--~G~v~Etsk~~il~~i~   51 (57)
                      ||+|+|+||.|||+|||+||++||.++|.+||||  +|.++||+++.+.+.+.
T Consensus        84 L~~~v~~l~~yf~~v~E~~I~~Nf~~vy~lLDE~id~G~~~~t~~~~l~~~i~  136 (423)
T 1w63_M           84 LYKVVQVFSEYFKELEEESIRDNFVIIYELLDELMDFGYPQTTDSKILQEFIT  136 (423)
T ss_dssp             HHHHHHHHHHHSSCCSHHHHHHHHHHHHHHHHHHCSSSSCCCCCSTTTTTTCC
T ss_pred             HHHHHHHHHHHHhhcCHHHHHHhHHHHHHHHHHHhcCCEEeecCHHHHHHhhc
Confidence            5899999999999999999999999999999999  99999999987665543

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Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	57
d2vgls_	142	Sigma2 adaptin (clathrin coat assembly protein AP1	99.56
d2vglm2	141	Mu2 adaptin (clathrin coat assembly protein AP50)	99.21