Citrus Sinensis ID: 042194

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360----
LILLKTGGRIIYCRPLEKHSSQVIEYFEGISGVPKIRKNYNPATWILEVTSTSAEAELGVDFSQIYRESALYKNNNELVKQLNTPPPSSRDLHFPIRFSRNGWGQFKSCLWKLHLSYWRSPSYNLTRIMHMTTSSLLFGVLFWEQGQKIDNQQNLFNIVGSLYMVVVFLGINNCSSVIPNVARERTVMYREVTVEIPYLLIQALAYVIISYPMIGYYGSAYKVFWNFYVMFCTMMFYNYLGMLLVSLTPNFMIASILSTVFYTLFNLFSGFLITGPKIPNWWIWLYYMTPTSWALNGMITSQYGDIDKEIIVFGETKSLSSFLEDYFGFHHDRLPITAVVLIFYPLVLAFLFAYCIGKLNFLRR
cccccccccEEEEcccccccHHHHHHccccccccccccccccHHHHHHHccccccccccccHHHHHcccHHHHHHHHHHHHHcccccccccccccccccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHccccccccccccccEEEEEEccHHHHHHHHHHHHHHcccccccccccccccHHHHHHHHccccccccccHHHHHHHHHHHHHHHHHHHHHHHHcccc
cEEEEcccEEEEEccccccHHHHHHHHHHccccccccccccHHHHHHHHcccHHHHHHHHHHHHHHHcccHHHHHHHHHHcccccccccccccccccccccHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHccHHccccEEEEEHEHccHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHcccEEccccccHHEEEEEEHcHHHHHHHHHHHHHccccccccccccccccHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccc
lillktggriiycrplekhsSQVIEYFEgisgvpkirknynpatWILEVTstsaeaelgvdFSQIYRESALYKNNNELVkqlntpppssrdlhfpirfsrngwgqfKSCLWKLHLsywrspsynltrIMHMTTSSLLFGVLFWEqgqkidnqQNLFNIVGSLYMVVVFLGINNcssvipnvarERTVMYREVTVEIPYLLIQALAYVIISYPMIGYYGSAYKVFWNFYVMFCTMMFYNYLGMLLVSLTPNFMIASILSTVFYTLFNLFSgflitgpkipnwWIWLYYMtptswalngmitsqygdidkeIIVFGETKSLSSFLEDyfgfhhdrlpiTAVVLIFYPLVLAFLFAYCIGKLNFLRR
lillktggriiycrplekhssqvIEYFEGISGVPKIRKNYNPATWILEVTSTSAEAELGVDFSQIYRESALYKNNNELVKQLNTPPPSSRDLHFPIRFSRNGWGQFKSCLWKLHLSYWRSPSYNLTRIMHMTTSSLLFGVLFWEQGQKIDNQQNLFNIVGSLYMVVVFLGINNCSSVIPNVARERTVMYREVTVEIPYLLIQALAYVIISYPMIGYYGSAYKVFWNFYVMFCTMMFYNYLGMLLVSLTPNFMIASILSTVFYTLFNLFSGFLITGPKIPNWWIWLYYMTPTSWALNGMITSQYGDIDKEIIVFGETKSLSSFLEDYFGFHHDRLPITAVVLIFYPLVLAFLFAYCIGKLNFLRR
LILLKTGGRIIYCRPLEKHSSQVIEYFEGISGVPKIRKNYNPATWILEVTSTSAEAELGVDFSQIYRESALYKNNNELVKQLNTPPPSSRDLHFPIRFSRNGWGQFKSCLWKLHLSYWRSPSYNLTRIMHMTTSSLLFGVLFWEQGQKIDNQQNLFNIVGSLYMVVVFLGINNCSSVIPNVARERTVMYREVTVEIPYLLIQALAYVIISYPMIGYYGSAYKVFWNFYVMFCTMMFYNYLGMLLVSLTPNFMIASILSTVFYTLFNLFSGFLITGPKIPNWWIWLYYMTPTSWALNGMITSQYGDIDKEIIVFGETKSLSSFLEDYFGFHHDRLPITAVVLIFYPLVLAFLFAYCIGKLNFLRR
*ILLKTGGRIIYCRPLEKHSSQVIEYFEGISGVPKIRKNYNPATWILEVTSTSAEAELGVDFSQIYRESALYKNNNEL*************LHFPIRFSRNGWGQFKSCLWKLHLSYWRSPSYNLTRIMHMTTSSLLFGVLFWEQGQKIDNQQNLFNIVGSLYMVVVFLGINNCSSVIPNVARERTVMYREVTVEIPYLLIQALAYVIISYPMIGYYGSAYKVFWNFYVMFCTMMFYNYLGMLLVSLTPNFMIASILSTVFYTLFNLFSGFLITGPKIPNWWIWLYYMTPTSWALNGMITSQYGDIDKEIIVFGETKSLSSFLEDYFGFHHDRLPITAVVLIFYPLVLAFLFAYCIGKLNFL**
LILLKTGGRIIYCRPLEKHSSQVIEYFEGISGVPKIRKNYNPATWILEVTSTSAEAELGVDFSQIYRESALYKNNN**********************SRNGWGQFKSCLWKLHLSYWRSPSYNLTRIMHMTTSSLLFGVLFWEQGQKIDNQQNLFNIVGSLYMVVVFLGINNCSSVIPNVARERTVMYREVTVEIPYLLIQALAYVIISYPMIGYYGSAYKVFWNFYVMFCTMMFYNYLGMLLVSLTPNFMIASILSTVFYTLFNLFSGFLITGPKIPNWWIWLYYMTPTSWALNGMITSQYGDIDKEIIVFGETKSLSSFLEDYFGFHHDRLPITAVVLIFYPLVLAFLFAYCIGKLNFLR*
LILLKTGGRIIYCRPLEKHSSQVIEYFEGISGVPKIRKNYNPATWILEVTSTSAEAELGVDFSQIYRESALYKNNNELVKQLNTPPPSSRDLHFPIRFSRNGWGQFKSCLWKLHLSYWRSPSYNLTRIMHMTTSSLLFGVLFWEQGQKIDNQQNLFNIVGSLYMVVVFLGINNCSSVIPNVARERTVMYREVTVEIPYLLIQALAYVIISYPMIGYYGSAYKVFWNFYVMFCTMMFYNYLGMLLVSLTPNFMIASILSTVFYTLFNLFSGFLITGPKIPNWWIWLYYMTPTSWALNGMITSQYGDIDKEIIVFGETKSLSSFLEDYFGFHHDRLPITAVVLIFYPLVLAFLFAYCIGKLNFLRR
LILLKTGGRIIYCRPLEKHSSQVIEYFEGISGVPKIRKNYNPATWILEVTSTSAEAELGVDFSQIYRESALYKNNNELVKQLNTPPPSSRDLHFPIRFSRNGWGQFKSCLWKLHLSYWRSPSYNLTRIMHMTTSSLLFGVLFWEQGQKIDNQQNLFNIVGSLYMVVVFLGINNCSSVIPNVARERTVMYREVTVEIPYLLIQALAYVIISYPMIGYYGSAYKVFWNFYVMFCTMMFYNYLGMLLVSLTPNFMIASILSTVFYTLFNLFSGFLITGPKIPNWWIWLYYMTPTSWALNGMITSQYGDIDKEIIVFGETKSLSSFLEDYFGFHHDRLPITAVVLIFYPLVLAFLFAYCIGKLNFLR*
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ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHooooooooHHHHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHiiiiiii
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LILLKTGGRIIYCRPLEKHSSQVIEYFEGISGVPKIRKNYNPATWILEVTSTSAEAELGVDFSQIYRESALYKNNNELVKQLNTPPPSSRDLHFPIRFSRNGWGQFKSCLWKLHLSYWRSPSYNLTRIMHMTTSSLLFGVLFWEQGQKIDNQQNLFNIVGSLYMVVVFLGINNCSSVIPNVARERTVMYREVTVEIPYLLIQALAYVIISYPMIGYYGSAYKVFWNFYVMFCTMMFYNYLGMLLVSLTPNFMIASILSTVFYTLFNLFSGFLITGPKIPNWWIWLYYMTPTSWALNGMITSQYGDIDKEIIVFGETKSLSSFLEDYFGFHHDRLPITAVVLIFYPLVLAFLFAYCIGKLNFLRR
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query364 2.2.26 [Sep-21-2011]
Q5W2741447 Pleiotropic drug resistan N/A no 1.0 0.251 0.625 1e-146
Q9LFH01450 ABC transporter G family yes no 1.0 0.251 0.585 1e-137
Q9ZUT81413 ABC transporter G family no no 1.0 0.257 0.588 1e-135
Q7PC821392 ABC transporter G family no no 1.0 0.261 0.548 1e-125
Q7PC811390 ABC transporter G family no no 1.0 0.261 0.548 1e-123
Q7PC831397 ABC transporter G family no no 1.0 0.260 0.532 1e-122
Q8GZ521400 ABC transporter G family no no 1.0 0.26 0.522 1e-120
Q9XIE21469 ABC transporter G family no no 1.0 0.247 0.475 1e-100
Q8GU891450 Pleiotropic drug resistan yes no 0.994 0.249 0.461 2e-99
Q7PC861442 ABC transporter G family no no 1.0 0.252 0.469 2e-99
>sp|Q5W274|PDR3_TOBAC Pleiotropic drug resistance protein 3 OS=Nicotiana tabacum GN=PDR3 PE=2 SV=1 Back     alignment and function desciption
 Score =  518 bits (1334), Expect = e-146,   Method: Compositional matrix adjust.
 Identities = 237/379 (62%), Positives = 307/379 (81%), Gaps = 15/379 (3%)

Query: 1    LILLKTGGRIIYCRPLEKHSSQVIEYFEGISGVPKIRKNYNPATWILEVTSTSAEAELGV 60
            LILLKTGGR+IY   L ++S ++IEYFEGIS VPKI+ N+NPATW+LEVTSTS+EA++ +
Sbjct: 1069 LILLKTGGRMIYWGHLGRNSCKMIEYFEGISCVPKIKNNHNPATWMLEVTSTSSEADISI 1128

Query: 61   DFSQIYRESALYKNNNELVKQLNTPPPSSRDLHFPIRFSRNGWGQFKSCLWKLHLSYWRS 120
            DF+++Y+ SAL+KNN ELVK+L+ PP  S+DLHFP RFS+NGWGQFK+C WK + SYWRS
Sbjct: 1129 DFAEVYKNSALHKNNEELVKKLSFPPAGSKDLHFPTRFSQNGWGQFKTCFWKQYWSYWRS 1188

Query: 121  PSYNLTRIMHMTTSSLLFGVLFWEQGQKIDNQQNLFNIVGSLYMVVVFLGINNCSSVIPN 180
            PSYNL R +HM  +SL+ G+LFW++G+K+DNQQ++F++ G+++  V+F GINN SSV+P 
Sbjct: 1189 PSYNLMRSLHMLFASLVSGLLFWDKGKKLDNQQSVFSVFGAMFTAVIFCGINNSSSVLPY 1248

Query: 181  VARERTVMYRE---------------VTVEIPYLLIQALAYVIISYPMIGYYGSAYKVFW 225
            V  ER+V+YRE               V +EIPYLL QALA+ +I+YPMIGYY SAYKVFW
Sbjct: 1249 VTTERSVLYRERFAGMYASWAYALAQVAIEIPYLLAQALAFTVITYPMIGYYWSAYKVFW 1308

Query: 226  NFYVMFCTMMFYNYLGMLLVSLTPNFMIASILSTVFYTLFNLFSGFLITGPKIPNWWIWL 285
             FY MFCT++++ YLGM+LVS+TP+F +A+IL + FYT+FNLF+GFL+   +IP WWIW 
Sbjct: 1309 YFYSMFCTLLYFTYLGMMLVSMTPSFPVAAILQSSFYTMFNLFAGFLMPKAQIPKWWIWF 1368

Query: 286  YYMTPTSWALNGMITSQYGDIDKEIIVFGETKSLSSFLEDYFGFHHDRLPITAVVLIFYP 345
            YY+TPTSW LNGM+TSQYGDI+KEI VF E K++++FL DYFGFHH++LPI A VLI YP
Sbjct: 1369 YYLTPTSWTLNGMLTSQYGDIEKEITVFQEKKTVAAFLGDYFGFHHNQLPIVAFVLIAYP 1428

Query: 346  LVLAFLFAYCIGKLNFLRR 364
            LV A LFA+ IGKLNF RR
Sbjct: 1429 LVFASLFAFFIGKLNFQRR 1447
May be a general defense protein.
Nicotiana tabacum (taxid: 4097)
>sp|Q9LFH0|AB37G_ARATH ABC transporter G family member 37 OS=Arabidopsis thaliana GN=ABCG37 PE=2 SV=1 Back     alignment and function description
>sp|Q9ZUT8|AB33G_ARATH ABC transporter G family member 33 OS=Arabidopsis thaliana GN=ABCG33 PE=2 SV=1 Back     alignment and function description
>sp|Q7PC82|AB42G_ARATH ABC transporter G family member 42 OS=Arabidopsis thaliana GN=ABCG42 PE=2 SV=1 Back     alignment and function description
>sp|Q7PC81|AB43G_ARATH ABC transporter G family member 43 OS=Arabidopsis thaliana GN=ABCG43 PE=3 SV=1 Back     alignment and function description
>sp|Q7PC83|AB41G_ARATH ABC transporter G family member 41 OS=Arabidopsis thaliana GN=ABCG41 PE=2 SV=1 Back     alignment and function description
>sp|Q8GZ52|AB30G_ARATH ABC transporter G family member 30 OS=Arabidopsis thaliana GN=ABCG30 PE=2 SV=2 Back     alignment and function description
>sp|Q9XIE2|AB36G_ARATH ABC transporter G family member 36 OS=Arabidopsis thaliana GN=ABCG36 PE=1 SV=1 Back     alignment and function description
>sp|Q8GU89|PDR4_ORYSJ Pleiotropic drug resistance protein 4 OS=Oryza sativa subsp. japonica GN=PDR4 PE=2 SV=1 Back     alignment and function description
>sp|Q7PC86|AB35G_ARATH ABC transporter G family member 35 OS=Arabidopsis thaliana GN=ABCG35 PE=2 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query364
296089838 1406 unnamed protein product [Vitis vinifera] 1.0 0.258 0.688 1e-164
225450466 1448 PREDICTED: pleiotropic drug resistance p 1.0 0.251 0.688 1e-164
147780242 1417 hypothetical protein VITISV_037751 [Viti 1.0 0.256 0.683 1e-163
224109722 1406 predicted protein [Populus trichocarpa] 1.0 0.258 0.633 1e-146
255542838 1458 ATP-binding cassette transporter, putati 1.0 0.249 0.638 1e-145
75321780 1447 RecName: Full=Pleiotropic drug resistanc 1.0 0.251 0.625 1e-144
449437952 1256 PREDICTED: pleiotropic drug resistance p 1.0 0.289 0.627 1e-144
449524702 1345 PREDICTED: pleiotropic drug resistance p 1.0 0.270 0.627 1e-143
359477643 1492 PREDICTED: pleiotropic drug resistance p 1.0 0.243 0.630 1e-143
297736800 1486 unnamed protein product [Vitis vinifera] 1.0 0.244 0.630 1e-143
>gi|296089838|emb|CBI39657.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
 Score =  584 bits (1505), Expect = e-164,   Method: Compositional matrix adjust.
 Identities = 261/379 (68%), Positives = 322/379 (84%), Gaps = 15/379 (3%)

Query: 1    LILLKTGGRIIYCRPLEKHSSQVIEYFEGISGVPKIRKNYNPATWILEVTSTSAEAELGV 60
            LILLKTGG +IYC PL +HSS+VIEYFEGI GVPKIR NYNPATW+LEVTSTSAEAELGV
Sbjct: 1028 LILLKTGGHLIYCGPLGQHSSRVIEYFEGIPGVPKIRNNYNPATWMLEVTSTSAEAELGV 1087

Query: 61   DFSQIYRESALYKNNNELVKQLNTPPPSSRDLHFPIRFSRNGWGQFKSCLWKLHLSYWRS 120
            DF+QIY++SALY+NN ELVKQL+ PP  S DLHFP RF+RNGW QFKSCLWK HLSYWRS
Sbjct: 1088 DFAQIYKDSALYENNKELVKQLSIPPHGSEDLHFPTRFARNGWSQFKSCLWKQHLSYWRS 1147

Query: 121  PSYNLTRIMHMTTSSLLFGVLFWEQGQKIDNQQNLFNIVGSLYMVVVFLGINNCSSVIPN 180
            PSYN+TR MHM  +SLLFG+LFW+QG++++NQQ +FN++GS+Y+ V+FLGINNCS+V+P+
Sbjct: 1148 PSYNITRTMHMLVASLLFGILFWKQGKELNNQQGVFNVLGSMYVAVIFLGINNCSTVLPH 1207

Query: 181  VARERTVMYRE---------------VTVEIPYLLIQALAYVIISYPMIGYYGSAYKVFW 225
            V  ERTV+YRE               VT+EIPYL IQ L YVII+YPMIGYY S YK+FW
Sbjct: 1208 VTNERTVLYREKFAGMYSSWAYSLAQVTIEIPYLFIQTLIYVIITYPMIGYYSSVYKIFW 1267

Query: 226  NFYVMFCTMMFYNYLGMLLVSLTPNFMIASILSTVFYTLFNLFSGFLITGPKIPNWWIWL 285
             FY MFCT+++YNYLGMLLV++TP+F +ASILS+ FYT+FNLF+GFLI  P++P WW+WL
Sbjct: 1268 YFYAMFCTLLYYNYLGMLLVAMTPSFPVASILSSAFYTIFNLFAGFLIPQPQVPKWWLWL 1327

Query: 286  YYMTPTSWALNGMITSQYGDIDKEIIVFGETKSLSSFLEDYFGFHHDRLPITAVVLIFYP 345
            +Y+TPTSW++ GM+TSQYGDI K+I+VFGETK++++FL+DY+GFHHDRL + AV+LI +P
Sbjct: 1328 FYLTPTSWSITGMLTSQYGDIHKDILVFGETKTVATFLKDYYGFHHDRLAVVAVILIAFP 1387

Query: 346  LVLAFLFAYCIGKLNFLRR 364
            L  AFLF YCI +LNF RR
Sbjct: 1388 LAFAFLFTYCIQRLNFQRR 1406

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|225450466|ref|XP_002280231.1| PREDICTED: pleiotropic drug resistance protein 3-like [Vitis vinifera] Back     alignment and taxonomy information
>gi|147780242|emb|CAN65735.1| hypothetical protein VITISV_037751 [Vitis vinifera] Back     alignment and taxonomy information
>gi|224109722|ref|XP_002333208.1| predicted protein [Populus trichocarpa] gi|222835114|gb|EEE73549.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|255542838|ref|XP_002512482.1| ATP-binding cassette transporter, putative [Ricinus communis] gi|223548443|gb|EEF49934.1| ATP-binding cassette transporter, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|75321780|sp|Q5W274.1|PDR3_TOBAC RecName: Full=Pleiotropic drug resistance protein 3; AltName: Full=NtPDR3 gi|55056942|emb|CAH39853.1| PDR-like ABC transporter [Nicotiana tabacum] Back     alignment and taxonomy information
>gi|449437952|ref|XP_004136754.1| PREDICTED: pleiotropic drug resistance protein 3-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|449524702|ref|XP_004169360.1| PREDICTED: pleiotropic drug resistance protein 3-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|359477643|ref|XP_002266393.2| PREDICTED: pleiotropic drug resistance protein 3-like [Vitis vinifera] Back     alignment and taxonomy information
>gi|297736800|emb|CBI26001.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query364
TAIR|locus:20840811450 ABCG37 "ATP-binding cassette G 1.0 0.251 0.585 2.6e-125
TAIR|locus:20498671413 ABCG33 "ATP-binding cassette G 1.0 0.257 0.588 7e-125
TAIR|locus:20377031442 ABCG35 "ATP-binding cassette G 0.879 0.221 0.483 3.3e-88
TAIR|locus:20196931454 ABCG39 "ATP-binding cassette G 1.0 0.250 0.45 5.6e-88
TAIR|locus:20259311469 PEN3 "PENETRATION 3" [Arabidop 0.903 0.223 0.473 7.7e-88
TAIR|locus:20448931453 ABCG34 "ATP-binding cassette G 1.0 0.250 0.457 1.5e-87
TAIR|locus:21965931423 ABCG40 "ATP-binding cassette G 0.994 0.254 0.437 7.7e-87
TAIR|locus:20949521416 ABCG29 "ATP-binding cassette G 0.975 0.250 0.430 1.4e-84
TAIR|locus:20456831426 ABCG31 "ATP-binding cassette G 1.0 0.255 0.403 1.5e-77
TAIR|locus:20395231420 ABCG32 "ATP-binding cassette G 0.851 0.218 0.418 2.2e-72
TAIR|locus:2084081 ABCG37 "ATP-binding cassette G37" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 1231 (438.4 bits), Expect = 2.6e-125, P = 2.6e-125
 Identities = 222/379 (58%), Positives = 289/379 (76%)

Query:     1 LILLKTGGRIIYCRPLEKHSSQVIEYFEGISGVPKIRKNYNPATWILEVTSTSAEAELGV 60
             L+LLK GGR+IY  PL +HS  +IEYFE +  +PKI+ N+NPATW+L+V+S S E ELGV
Sbjct:  1072 LVLLKRGGRMIYTGPLGQHSRHIIEYFESVPEIPKIKDNHNPATWMLDVSSQSVEIELGV 1131

Query:    61 DFSQIYRESALYKNNNELVKQLNTPPPSSRDLHFPIRFSRNGWGQFKSCLWKLHLSYWRS 120
             DF++IY +SALYK N+ELVKQL+ P   S D+ F   F+++ WGQFKS LWK++LSYWRS
Sbjct:  1132 DFAKIYHDSALYKRNSELVKQLSQPDSGSSDIQFKRTFAQSWWGQFKSILWKMNLSYWRS 1191

Query:   121 PSYNLTRIMHMTTSSLLFGVLFWEQGQKIDNQQNLFNIVGSLYMVVVFLGINNCSSVIPN 180
             PSYNL R+MH   SSL+FG LFW+QGQ +D QQ++F + G++Y +V+FLGINNC+S +  
Sbjct:  1192 PSYNLMRMMHTLVSSLIFGALFWKQGQNLDTQQSMFTVFGAIYGLVLFLGINNCASALQY 1251

Query:   181 VARERTVMYRE---------------VTVEIPYLLIQALAYVIISYPMIGYYGSAYKVFW 225
                ER VMYRE               V  EIPY+ IQA  +VI++YPMIG+Y SAYKVFW
Sbjct:  1252 FETERNVMYRERFAGMYSATAYALGQVVTEIPYIFIQAAEFVIVTYPMIGFYPSAYKVFW 1311

Query:   226 NFYVMFCTMMFYNYLGMLLVSLTPNFMIASILSTVFYTLFNLFSGFLITGPKIPNWWIWL 285
             + Y MFC+++ +NYL M LVS+TPNFM+A+IL ++FY  FNLFSGFLI   ++P WWIWL
Sbjct:  1312 SLYSMFCSLLTFNYLAMFLVSITPNFMVAAILQSLFYVGFNLFSGFLIPQTQVPGWWIWL 1371

Query:   286 YYMTPTSWALNGMITSQYGDIDKEIIVFGETKSLSSFLEDYFGFHHDRLPITAVVLIFYP 345
             YY+TPTSW LNG I+SQYGDI +EI VFG++ +++ FL+DYFGFHHD L +TAVV I +P
Sbjct:  1372 YYLTPTSWTLNGFISSQYGDIHEEINVFGQSTTVARFLKDYFGFHHDLLAVTAVVQIAFP 1431

Query:   346 LVLAFLFAYCIGKLNFLRR 364
             + LA +FA+ +GKLNF RR
Sbjct:  1432 IALASMFAFFVGKLNFQRR 1450
GO:0000166 "nucleotide binding" evidence=IEA
GO:0005524 "ATP binding" evidence=IEA
GO:0016020 "membrane" evidence=IEA
GO:0016887 "ATPase activity" evidence=IEA
GO:0017111 "nucleoside-triphosphatase activity" evidence=IEA
GO:0042626 "ATPase activity, coupled to transmembrane movement of substances" evidence=ISS
GO:0006855 "drug transmembrane transport" evidence=ISS
GO:0005886 "plasma membrane" evidence=IDA
GO:0005215 "transporter activity" evidence=IDA
GO:0009926 "auxin polar transport" evidence=IMP
GO:0048364 "root development" evidence=IMP
GO:0071366 "cellular response to indolebutyric acid stimulus" evidence=IMP
GO:0009506 "plasmodesma" evidence=IDA
GO:0000041 "transition metal ion transport" evidence=RCA
GO:0010359 "regulation of anion channel activity" evidence=RCA
TAIR|locus:2049867 ABCG33 "ATP-binding cassette G33" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2037703 ABCG35 "ATP-binding cassette G35" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2019693 ABCG39 "ATP-binding cassette G39" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2025931 PEN3 "PENETRATION 3" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2044893 ABCG34 "ATP-binding cassette G34" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2196593 ABCG40 "ATP-binding cassette G40" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2094952 ABCG29 "ATP-binding cassette G29" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2045683 ABCG31 "ATP-binding cassette G31" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2039523 ABCG32 "ATP-binding cassette G32" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query364
PLN031401470 PLN03140, PLN03140, ABC transporter G family membe 1e-135
TIGR009561394 TIGR00956, 3a01205, Pleiotropic Drug Resistance (P 1e-78
pfam01061210 pfam01061, ABC2_membrane, ABC-2 type transporter 2e-35
TIGR00955617 TIGR00955, 3a01204, The Eye Pigment Precursor Tran 1e-24
TIGR00956 1394 TIGR00956, 3a01205, Pleiotropic Drug Resistance (P 7e-14
PLN03140 1470 PLN03140, PLN03140, ABC transporter G family membe 1e-12
PLN03211659 PLN03211, PLN03211, ABC transporter G-25; Provisio 2e-06
pfam12698278 pfam12698, ABC2_membrane_3, ABC-2 family transport 5e-05
>gnl|CDD|215599 PLN03140, PLN03140, ABC transporter G family member; Provisional Back     alignment and domain information 
 Score =  420 bits (1081), Expect = e-135
 Identities = 177/381 (46%), Positives = 256/381 (67%), Gaps = 17/381 (4%)

Query: 1    LILLKTGGRIIYCRPLEKHSSQVIEYFEGISGVPKIRKNYNPATWILEVTSTSAEAELGV 60
            L+L+K GG++IY  PL ++S ++IEYFE I GVPKI++ YNPATW+LEV+S +AE +LG+
Sbjct: 1090 LLLMKRGGQVIYSGPLGRNSHKIIEYFEAIPGVPKIKEKYNPATWMLEVSSLAAEVKLGI 1149

Query: 61   DFSQIYRESALYKNNNELVKQLNTPPPSSRDLHFPIRFSRNGWGQFKSCLWKLHLSYWRS 120
            DF++ Y+ S+LY+ N  LVK+L+TPPP + DL+F  ++S++ WGQFKSCLWK   +YWRS
Sbjct: 1150 DFAEHYKSSSLYQRNKALVKELSTPPPGASDLYFATQYSQSTWGQFKSCLWKQWWTYWRS 1209

Query: 121  PSYNLTRIMHMTTSSLLFGVLFWEQGQKIDNQQNLFNIVGSLYMVVVFLGINNCSSVIPN 180
            P YNL R      ++L+ G +FW+ G K  N  +L  ++G++Y  V+F+GINNCS+V P 
Sbjct: 1210 PDYNLVRFFFTLAAALMVGTIFWKVGTKRSNANDLTMVIGAMYAAVLFVGINNCSTVQPM 1269

Query: 181  VARERTVMYRE---------------VTVEIPYLLIQALAYVIISYPMIGYYGSAYKVFW 225
            VA ERTV YRE               V  EIPY+LIQ   Y +I Y M+ +  +A K FW
Sbjct: 1270 VAVERTVFYRERAAGMYSALPYAIAQVVCEIPYVLIQTTYYTLIVYAMVAFEWTAAKFFW 1329

Query: 226  NFYVMFCTMMFYNYLGMLLVSLTPNFMIASILSTVFYTLFNLFSGFLITGPKIPNWWIWL 285
             +++ F + +++ Y GM+ VSLTPN  +A+I +  FY LFNLFSGF I  PKIP WW+W 
Sbjct: 1330 FYFISFFSFLYFTYYGMMTVSLTPNQQVAAIFAAAFYGLFNLFSGFFIPRPKIPKWWVWY 1389

Query: 286  YYMTPTSWALNGMITSQYGDIDKEIIVFGETKSLS--SFLEDYFGFHHDRLPITAVVLIF 343
            Y++ P +W + G+I SQYGD++  I V G     +   +++D++G+  D +   A VL+ 
Sbjct: 1390 YWICPVAWTVYGLIVSQYGDVEDTIKVPGGAPDPTIKWYIQDHYGYDPDFMGPVAAVLVG 1449

Query: 344  YPLVLAFLFAYCIGKLNFLRR 364
            + +  AF+FA+CI  LNF  R
Sbjct: 1450 FTVFFAFIFAFCIRTLNFQTR 1470

Length = 1470
>gnl|CDD|233208 TIGR00956, 3a01205, Pleiotropic Drug Resistance (PDR) Family protein Back     alignment and domain information
>gnl|CDD|216273 pfam01061, ABC2_membrane, ABC-2 type transporter Back     alignment and domain information
>gnl|CDD|233207 TIGR00955, 3a01204, The Eye Pigment Precursor Transporter (EPP) Family protein Back     alignment and domain information
>gnl|CDD|233208 TIGR00956, 3a01205, Pleiotropic Drug Resistance (PDR) Family protein Back     alignment and domain information
>gnl|CDD|215599 PLN03140, PLN03140, ABC transporter G family member; Provisional Back     alignment and domain information
>gnl|CDD|215634 PLN03211, PLN03211, ABC transporter G-25; Provisional Back     alignment and domain information
>gnl|CDD|221721 pfam12698, ABC2_membrane_3, ABC-2 family transporter protein Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 364
PLN031401470 ABC transporter G family member; Provisional 100.0
TIGR00955617 3a01204 The Eye Pigment Precursor Transporter (EPP 100.0
KOG00651391 consensus Pleiotropic drug resistance proteins (PD 100.0
TIGR00956 1394 3a01205 Pleiotropic Drug Resistance (PDR) Family p 100.0
PLN03140 1470 ABC transporter G family member; Provisional 100.0
TIGR009561394 3a01205 Pleiotropic Drug Resistance (PDR) Family p 100.0
PLN03211659 ABC transporter G-25; Provisional 100.0
KOG0061613 consensus Transporter, ABC superfamily (Breast can 100.0
KOG0065 1391 consensus Pleiotropic drug resistance proteins (PD 100.0
PF01061210 ABC2_membrane: ABC-2 type transporter; InterPro: I 99.84
TIGR01291253 nodJ ABC-2 type transporter, NodJ family. Nearly a 99.77
TIGR01247236 drrB daunorubicin resistance ABC transporter membr 99.74
TIGR03861253 phenyl_ABC_PedC alcohol ABC transporter, permease 99.7
PRK15066257 inner membrane transport permease; Provisional 99.65
TIGR00025232 Mtu_efflux ABC transporter efflux protein, DrrB fa 99.63
TIGR03062208 pip_yhgE_Cterm YhgE/Pip C-terminal domain. This fa 99.54
COG0842286 ABC-type multidrug transport system, permease comp 99.19
TIGR01248152 drrC daunorubicin resistance protein C. The model 99.12
COG1682263 TagG ABC-type polysaccharide/polyol phosphate expo 99.09
PRK15176264 Vi polysaccharide export inner membrane protein Ve 98.9
TIGR03518240 ABC_perm_GldF gliding motility-associated ABC tran 98.74
PF12679277 ABC2_membrane_2: ABC-2 family transporter protein 98.24
PF12698344 ABC2_membrane_3: ABC-2 family transporter protein; 98.09
PF06422103 PDR_CDR: CDR ABC transporter; InterPro: IPR010929 97.98
COG4587268 ABC-type uncharacterized transport system, permeas 97.94
COG1277278 NosY ABC-type transport system involved in multi-c 97.57
PF0837065 PDR_assoc: Plant PDR ABC transporter associated; I 97.45
PF12051382 DUF3533: Protein of unknown function (DUF3533); In 97.39
PF03379215 CcmB: CcmB protein; InterPro: IPR003544 Within mit 97.15
COG1511780 Predicted membrane protein [Function unknown] 96.92
TIGR01190211 ccmB heme exporter protein CcmB. This model descri 95.87
PF06182229 ABC2_membrane_6: ABC-2 family transporter protein; 95.62
TIGR01257 2272 rim_protein retinal-specific rim ABC transporter. 93.82
COG2386221 CcmB ABC-type transport system involved in cytochr 92.44
TIGR03733248 lanti_perm_MutG lantibiotic protection ABC transpo 90.66
COG3559536 TnrB3 Putative exporter of polyketide antibiotics 89.55
TIGR01257 2272 rim_protein retinal-specific rim ABC transporter. 87.37
PF12730232 ABC2_membrane_4: ABC-2 family transporter protein 85.33
COG1668407 NatB ABC-type Na+ efflux pump, permease component 81.55
PF09847449 DUF2074: Predicted permease (DUF2074); InterPro: I 80.21
>PLN03140 ABC transporter G family member; Provisional Back     alignment and domain information 
Probab=100.00  E-value=7.4e-58  Score=485.35  Aligned_cols=363  Identities=48%  Similarity=1.009  Sum_probs=330.3

Q ss_pred             ceecc-CCeEEEEcCCCCCchHHHhhhccCCCCCCCCCCCChhhHHHHhccCCcccccCCCHHHHHhccHhhHHHHHHHH
Q 042194            2 ILLKT-GGRIIYCRPLEKHSSQVIEYFEGISGVPKIRKNYNPATWILEVTSTSAEAELGVDFSQIYRESALYKNNNELVK   80 (364)
Q Consensus         2 llLl~-~G~~vY~G~~~~~~~~~~~yF~~~~g~~~cp~~~NpaD~~l~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~   80 (364)
                      +++++ +|+++|+||+++|++++++||++++|+++||++.|||||++|+++.+.+.+..+++++.|++|+.+++..++++
T Consensus      1090 vllL~~gG~~v~~G~~~~~~~~~~~yF~~~~g~~~~p~~~NPAd~~l~v~~~~~~~~~~~d~~~~~~~s~~~~~~~~~~~ 1169 (1470)
T PLN03140       1090 LLLMKRGGQVIYSGPLGRNSHKIIEYFEAIPGVPKIKEKYNPATWMLEVSSLAAEVKLGIDFAEHYKSSSLYQRNKALVK 1169 (1470)
T ss_pred             EEEEcCCCEEEEECCcccccccHHHHHHhcCCCCCCCCCCCchhhhhhhhcccccccccchHHHHHhccHHHHHHHHHHH
Confidence            35566 59999999999999999999999867745999999999999999876555545689999999999888877777


Q ss_pred             hhCCCCCCCCCCCCCcccccchHHHHHHHHHHHHHHhhcChhhHHHHHHHHHHHHHHHHHHhhccCCCccchhchHHHHH
Q 042194           81 QLNTPPPSSRDLHFPIRFSRNGWGQFKSCLWKLHLSYWRSPSYNLTRIMHMTTSSLLFGVLFWEQGQKIDNQQNLFNIVG  160 (364)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~q~~~l~~R~~~~~~R~~~~~~~~l~~~~~~~ll~g~~f~~~~~~~~~~~~~~~~~g  160 (364)
                      +.+.+.+..++.....+++++++.|++.+++|.+++.||||.+...++++.+++++++|++|++++++..+.++.+++.|
T Consensus      1170 ~~~~~~~~~~~~~~~~~~~~s~~~Q~~~l~~R~~~~~~R~p~~~~~r~~~~i~~al~~G~~f~~~~~~~~~~~~~~~~~g 1249 (1470)
T PLN03140       1170 ELSTPPPGASDLYFATQYSQSTWGQFKSCLWKQWWTYWRSPDYNLVRFFFTLAAALMVGTIFWKVGTKRSNANDLTMVIG 1249 (1470)
T ss_pred             HhccCCCCccccccCccccCCHHHHHHHHHHHHHHHHHCCHhHHHHHHHHHHHHHHHHHHHhhCCCCCcchhhhHHHHHH
Confidence            66655443333333567889999999999999999999999999999999999999999999999986555678889999


Q ss_pred             HHHHHHHHHHHHhhhhccchhhhhhhhhhHH---------------hhhhhhHHHHHHHHHHhhhhcccccccchhHHHH
Q 042194          161 SLYMVVVFLGINNCSSVIPNVARERTVMYRE---------------VTVEIPYLLIQALAYVIISYPMIGYYGSAYKVFW  225 (364)
Q Consensus       161 ~~~~~~~~~~~~~~~~~~~~~~~er~~~~re---------------~~~~~~~~~~~~~~~~~i~y~~~g~~~~~~~~~~  225 (364)
                      ++|+.+++.++....++.+.+..||.+|+||               +++|+|+.++.+++|.+|+|||+|++++++.|+.
T Consensus      1250 ~l~~~~~~~~~~~~~~~~p~~~~eR~vf~REr~~~~Y~~~~y~la~~l~eiP~~~~~~~if~~i~Y~m~Gl~~~~~~f~~ 1329 (1470)
T PLN03140       1250 AMYAAVLFVGINNCSTVQPMVAVERTVFYRERAAGMYSALPYAIAQVVCEIPYVLIQTTYYTLIVYAMVAFEWTAAKFFW 1329 (1470)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCccHHHHHH
Confidence            9999998888877778888999999999999               8999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhhccccCCCCCCcchhhhhccChHHHHHHHHHHhhhcC
Q 042194          226 NFYVMFCTMMFYNYLGMLLVSLTPNFMIASILSTVFYTLFNLFSGFLITGPKIPNWWIWLYYMTPTSWALNGMITSQYGD  305 (364)
Q Consensus       226 ~~~~~~l~~~~~~~lg~~i~~~~~~~~~a~~~~~~~~~~~~l~sG~~~~~~~lp~~~~wl~~~sp~~y~~~~l~~~~f~~  305 (364)
                      +++++++..++++++|+++++++||.+.|+.++++++.++++++|+++|.++||.||+|++|+||++|++++++.|||++
T Consensus      1330 ~~~~~~l~~~~~~~~g~~~~a~~p~~~~A~~~~~~~~~~~~lf~Gf~i~~~~iP~~~~W~~~isp~~y~~~~l~~~~f~~ 1409 (1470)
T PLN03140       1330 FYFISFFSFLYFTYYGMMTVSLTPNQQVAAIFAAAFYGLFNLFSGFFIPRPKIPKWWVWYYWICPVAWTVYGLIVSQYGD 1409 (1470)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHCCcHHHHHHHHHHHHHHHHHHeeeccChHHCchHHHHHHHcCHHHHHHhhhHHHHhCC
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCceeeecC--CCccHHHHHHHhhCCCCCCccchhhHHHHHHHHHHHHHHHHHHhcccccC
Q 042194          306 IDKEIIVFG--ETKSLSSFLEDYFGFHHDRLPITAVVLIFYPLVLAFLFAYCIGKLNFLRR  364 (364)
Q Consensus       306 ~~~~~~~~~--~~~~~~~~l~~~~g~~~~~~~~~~~~L~~~~~~~~~l~~~~l~~~~~~~~  364 (364)
                      .+..|+|++  +..++++++++++|++++..|.++++++++.++|++++++++++.+.+||
T Consensus      1410 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~il~~~~~~f~~~~~~~~~~~~~q~r 1470 (1470)
T PLN03140       1410 VEDTIKVPGGAPDPTIKWYIQDHYGYDPDFMGPVAAVLVGFTVFFAFIFAFCIRTLNFQTR 1470 (1470)
T ss_pred             CCCcccCCCCCCCCcHHHHHHHhcCcCcccccchhhhHHHHHHHHHHHHHHHHHHhhcccC
Confidence            999898886  23678999999999999999999999999999999999999999999998

>TIGR00955 3a01204 The Eye Pigment Precursor Transporter (EPP) Family protein Back     alignment and domain information
>KOG0065 consensus Pleiotropic drug resistance proteins (PDR1-15), ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism] Back     alignment and domain information
>TIGR00956 3a01205 Pleiotropic Drug Resistance (PDR) Family protein Back     alignment and domain information
>PLN03140 ABC transporter G family member; Provisional Back     alignment and domain information
>TIGR00956 3a01205 Pleiotropic Drug Resistance (PDR) Family protein Back     alignment and domain information
>PLN03211 ABC transporter G-25; Provisional Back     alignment and domain information
>KOG0061 consensus Transporter, ABC superfamily (Breast cancer resistance protein) [Secondary metabolites biosynthesis, transport and catabolism] Back     alignment and domain information
>KOG0065 consensus Pleiotropic drug resistance proteins (PDR1-15), ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism] Back     alignment and domain information
>PF01061 ABC2_membrane: ABC-2 type transporter; InterPro: IPR013525 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems Back     alignment and domain information
>TIGR01291 nodJ ABC-2 type transporter, NodJ family Back     alignment and domain information
>TIGR01247 drrB daunorubicin resistance ABC transporter membrane protein Back     alignment and domain information
>TIGR03861 phenyl_ABC_PedC alcohol ABC transporter, permease protein Back     alignment and domain information
>PRK15066 inner membrane transport permease; Provisional Back     alignment and domain information
>TIGR00025 Mtu_efflux ABC transporter efflux protein, DrrB family Back     alignment and domain information
>TIGR03062 pip_yhgE_Cterm YhgE/Pip C-terminal domain Back     alignment and domain information
>COG0842 ABC-type multidrug transport system, permease component [Defense mechanisms] Back     alignment and domain information
>TIGR01248 drrC daunorubicin resistance protein C Back     alignment and domain information
>COG1682 TagG ABC-type polysaccharide/polyol phosphate export systems, permease component [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane] Back     alignment and domain information
>PRK15176 Vi polysaccharide export inner membrane protein VexB; Provisional Back     alignment and domain information
>TIGR03518 ABC_perm_GldF gliding motility-associated ABC transporter permease protein GldF Back     alignment and domain information
>PF12679 ABC2_membrane_2: ABC-2 family transporter protein Back     alignment and domain information
>PF12698 ABC2_membrane_3: ABC-2 family transporter protein; PDB: 2P0S_B 3CNI_A Back     alignment and domain information
>PF06422 PDR_CDR: CDR ABC transporter; InterPro: IPR010929 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems Back     alignment and domain information
>COG4587 ABC-type uncharacterized transport system, permease component [General function prediction only] Back     alignment and domain information
>COG1277 NosY ABC-type transport system involved in multi-copper enzyme maturation, permease component [General function prediction only] Back     alignment and domain information
>PF08370 PDR_assoc: Plant PDR ABC transporter associated; InterPro: IPR013581 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems Back     alignment and domain information
>PF12051 DUF3533: Protein of unknown function (DUF3533); InterPro: IPR022703 This transmembrane domain is functionally uncharacterised Back     alignment and domain information
>PF03379 CcmB: CcmB protein; InterPro: IPR003544 Within mitochondria and bacteria, a family of related proteins is involved in the assembly of periplasmic c-type cytochromes: these include CycK [], CcmF [,], NrfE [] and CcbS [] Back     alignment and domain information
>COG1511 Predicted membrane protein [Function unknown] Back     alignment and domain information
>TIGR01190 ccmB heme exporter protein CcmB Back     alignment and domain information
>PF06182 ABC2_membrane_6: ABC-2 family transporter protein; InterPro: IPR010390 This family consists of a number of hypothetical bacterial proteins of unknown function Back     alignment and domain information
>TIGR01257 rim_protein retinal-specific rim ABC transporter Back     alignment and domain information
>COG2386 CcmB ABC-type transport system involved in cytochrome c biogenesis, permease component [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>TIGR03733 lanti_perm_MutG lantibiotic protection ABC transporter permease subunit, MutG family Back     alignment and domain information
>COG3559 TnrB3 Putative exporter of polyketide antibiotics [Cell envelope biogenesis, outer membrane] Back     alignment and domain information
>TIGR01257 rim_protein retinal-specific rim ABC transporter Back     alignment and domain information
>PF12730 ABC2_membrane_4: ABC-2 family transporter protein Back     alignment and domain information
>COG1668 NatB ABC-type Na+ efflux pump, permease component [Energy production and conversion / Inorganic ion transport and metabolism] Back     alignment and domain information
>PF09847 DUF2074: Predicted permease (DUF2074); InterPro: IPR018646 This family has no known function Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query364
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 6e-06
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 1e-04
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
 Score = 47.2 bits (111), Expect = 6e-06
 Identities = 59/389 (15%), Positives = 108/389 (27%), Gaps = 118/389 (30%)

Query: 9   RIIYCRPLEKHSSQVIEYFEGISGVPKIRKNYNPATWILEVTSTSAEAELGVDFSQIYRE 68
           R+ +   L K    V ++ E +     +R NY    +++    T       +    I + 
Sbjct: 66  RLFWTL-LSKQEEMVQKFVEEV-----LRINYK---FLMSPIKTEQRQPSMMTRMYIEQR 116

Query: 69  SALYKNNNELVK-QLNTPPPSS--RDLHFPIRFSRN-------GWGQFKSCLWKLHLSYW 118
             LY +N    K  ++   P    R     +R ++N       G G  K+ +        
Sbjct: 117 DRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSG--KTWVALDVCL-- 172

Query: 119 RSPSYNLTRIMHMTTSSLLFGVLFW-------EQGQKIDNQQNLFNIVGSLYMVVVFLGI 171
              SY +   M        F + FW            ++  Q L   +   +        
Sbjct: 173 ---SYKVQCKMD-------FKI-FWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSS 221

Query: 172 NNCSSVIP---NVARERTVMYREVTVEIPY---LLIQALAYVIISYPMIGYYGSAYKVFW 225
           N     I    +  +      R +    PY   LL+  L  V            A+  F 
Sbjct: 222 N-----IKLRIHSIQAE---LRRLLKSKPYENCLLV--LLNV--------QNAKAWNAF- 262

Query: 226 NFYVMFCTMMF-----------------YNYLGMLLVSLTPN---FMIASILSTVFYTL- 264
           N     C ++                  +  L    ++LTP+    ++   L      L 
Sbjct: 263 NLS---CKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLP 319

Query: 265 ----------FNLFSGFLITGPKIPNWWIWLYYMTPTSWALNGMITSQYGDIDKEII--V 312
                      ++ +  +  G        W  +       L  +I S    ++      +
Sbjct: 320 REVLTTNPRRLSIIAESIRDGLA-----TWDNWKHVNCDKLTTIIESSLNVLEPAEYRKM 374

Query: 313 FGETKSLSSFLEDYFGFHHDRLPITAVVL 341
           F     LS F             I  ++L
Sbjct: 375 F---DRLSVFPPS--------AHIPTILL 392
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

No hit with probability above 80.00

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00