Citrus Sinensis ID: 042207

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------52
SADAQENFLQCLLQNSDNSTTSISKVIYTQNNSSYSSILDFTIQNRRFLTAATPKPQVIVKPLQVSHIQSVIFCSQWHGMQVRVRSGGHDYEGLSYISHVPYVVIDLINLRSISIDVEKTTAWIQAGATIGELYHKIADTSGTLGFPAGVCPSVGVGGHFSGGGYGILLRKYGLAADHVVDAHLVDVKGRLLDRKSMGEDLFWAIRGGGGASFGVIVAWKVELVTIPSTVTVCSSRRSLKRNLTRLVHRWQFVADKFDEDLITGVFLSSVNASTGGNRTVIASFESVFLGGVDGVIPLMQKSFPELGLVEKECTETSWVRAVLHHARFPIEASLDVLLNRSPVTKRFYKAKSDYVREPMPEIAFEGIFELFNEKEGGNAEIMLVPYGGKMSEIPESAIPFPHRAGNIYKMSPVVYWYEEGSETAERHINWIRKLHSFLTPFVSKNPRASYINYRDIDIGANKIRGYTSYKQASIWGRKYFRNNFDRLVVVKTMVDPHNFFRNEQSIPSLSSWRKQKDD
ccccHHHHHHHHcccccccccccccEEEcccccccHHHHHHHHccccccccccccccEEEEcccHHHHHHHHHHHHHcccEEEEEcccccccccccccccccEEEEccccccEEEEccccEEEEcccccHHHHHHHHHHccccccccccccccccccccccccccHHHHHHHHccccEEEEEEEEEEccEEEEccccccccEEEEEcccccccEEEEEEEEEEEEcccEEEEEEEcccHHHHHHHHHHHHHHHHHccccccEEEEEEcccccccccccEEEEEEEEEEcccHHcHHHHHHHHcccccccccccccccHHHHHHHHccccccHHHHHHccccccccccEEEEcccccccccHHHHHHHHHHHHccccccEEEEEEccccccccccccccccccccccEEEEEEEEEEcccccHHHHHHHHHHHHHHHHHccccccccccEEccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccc
ccccHHHHHHHHHHcccccccccccEEEccccccHHHHHHHHHHccccccccccccEEEEEcccHHHHHEHEHHHHHcccEEEEEcccccccccEEEccccEEEEEcHHcccEEEEcccccEEEEccccHHHHHHHHHHHcccccccccccccccccccccccHHHHHHHHHccccccEEEEEEEEccccEEcHHHHcccHHEEEEccccccEEEEEEEEEEEEccccEEEEEEEcccHHHcHHHHHHHHHHHHHcccccEEEEEEEEEccccccccEEEEEEEEEEEcccHHHHHHHHHHHccHccccHccHHEHcHHHHHHHHccccccccHHHHHccccccHHHHccccccccccccHHHHHHHHHHHHHcccccEEEEEcccccccccccccccccccccccEEEEEEEEEcccccHHHHHHHHHHHHHHHHHccccccccccHEEEEEcccccccccccccccHHHHHHHHHHHHHHHHHHHEEEEEcccccccccccccccccccccccccc
SADAQENFLQCLlqnsdnsttSISKVIYtqnnssyssiLDFTIQNrrfltaatpkpqvivkplqvshiQSVIFCSQWHGMQVRvrsgghdyeglsyiSHVPYVVIDLINLRSISIDVEKTTAWIQAGATIGELYHKIadtsgtlgfpagvcpsvgvgghfsgggYGILLRKYGLAADHVVDAHLVDVKGRLLDRKSMGEDLFWAirggggasFGVIVAWKVELVTIPSTVTVCSSRRSLKRNLTRLVHRWQFVAdkfdedliTGVFLSSvnastggnrtVIASFESVflggvdgviplmqksfpelglvekecteTSWVRAVLHHARFPIEASLDVllnrspvtkrFYKAKSdyvrepmpeiAFEGIFELfnekeggnaeimlvpyggkmseipesaipfphragniykmspVVYWYEEGSETAERHINWIRKLHSFltpfvsknprasyinyrdidigankirgytsykqASIWGRKYFRNNFDRLVVVKTMvdphnffrneqsipslsswrkqkdd
SADAQENFLQCLLQNSDNSTTSISKVIYTQNNSSYSSILDFTIQNRRFLTAATPKPQVIVKPLQVSHIQSVIFCSQWHGMQVRVRSGGHDYEGLSYISHVPYVVIDLINLRSISIDVEKTTAWIQAGATIGELYHKIADTSGTLGFPAGVCPSVGVGGHFSGGGYGILLRKYGLAADHVVDAHLVDVKGRLLDRKSMGEDLFWAIRGGGGASFGVIVAWKVELVTIpstvtvcssrrslkrnlTRLVHRWQFVADKFDEDLITGVFLSsvnastggnRTVIASFESVFLGGVDGVIPLMQKSFPELGLVEKECTETSWVRAVLHHARFPieasldvllnrspvTKRFYKAKSDYVREPMPEIAFEGIFELFNEKEGGNAEIMLVPYGGKMSEIPESAIPFPHRAGNIYKMSPVVYWYEEGSETAERHINWIRKLHSFLTpfvsknprasyinyrdidigankirgyTSYKQASIWGRKYFRNNFDRLVVVKTMvdphnffrneqsipslsswrkqkdd
SADAQENFLQCLLQNSDNSTTSISKVIYTQNNSSYSSILDFTIQNRRFLTAATPKPQVIVKPLQVSHIQSVIFCSQWHGMQVRVRSGGHDYEGLSYISHVPYVVIDLINLRSISIDVEKTTAWIQAGATIGELYHKIADTSGTLGFPAGVCPSVgvgghfsgggygILLRKYGlaadhvvdahlvdvKGRLLDRKSMGEDLFWAIRGGGGASFGVIVAWKVELVTIPSTVTVCSSRRSLKRNLTRLVHRWQFVADKFDEDLITGVFLSSVNASTGGNRTVIASFESVFLGGVDGVIPLMQKSFPELGLVEKECTETSWVRAVLHHARFPIEASLDVLLNRSPVTKRFYKAKSDYVREPMPEIAFEGIFELFNEKEGGNAEIMLVPYGGKMSEIPESAIPFPHRAGNIYKMSPVVYWYEEGSETAERHINWIRKLHSFLTPFVSKNPRASYINYRDIDIGANKIRGYTSYKQASIWGRKYFRNNFDRLVVVKTMVDPHNFFRNEQSIPSLSSWRKQKDD
********LQCLL********SISKVIYTQNNSSYSSILDFTIQNRRFLTAATPKPQVIVKPLQVSHIQSVIFCSQWHGMQVRVRSGGHDYEGLSYISHVPYVVIDLINLRSISIDVEKTTAWIQAGATIGELYHKIADTSGTLGFPAGVCPSVGVGGHFSGGGYGILLRKYGLAADHVVDAHLVDVKGRLLDRKSMGEDLFWAIRGGGGASFGVIVAWKVELVTIPSTVTVCSSRRSLKRNLTRLVHRWQFVADKFDEDLITGVFLSSVNASTGGNRTVIASFESVFLGGVDGVIPLMQKSFPELGLVEKECTETSWVRAVLHHARFPIEASLDVLLNRSPVTKRFYKAKSDYVREPMPEIAFEGIFELFNEKEGGNAEIMLVPYGGKMSEIPESAIPFPHRAGNIYKMSPVVYWYEEGSETAERHINWIRKLHSFLTPFVSKNPRASYINYRDIDIGANKIRGYTSYKQASIWGRKYFRNNFDRLVVVKTMVDPHNFFR*****************
***AQENFLQCLLQNSD**TTSISKVIYTQNNSSYSSILDFTIQNRRFLTAATPKPQVIVKPLQVSHIQSVIFCSQWHGMQVRVRSGGHDYEGLSYISHVPYVVIDLINLRSISIDVEKTTAWIQAGATIGELYHKIADTSGTLGFPAGVCPSVGVGGHFSGGGYGILLRKYGLAADHVVDAHLVDVKGRLLDRKSMGEDLFWAIRGGGGASFGVIVAWKVELVTIPSTVTVCSSRRSLKRNLTRLVHRWQFVADKFDEDLITGVFLSSVNASTGGNRTVIASFESVFLGGVDGVIPLMQKSFPELGLVEKECTETSWVRAVLHHARFPIEASLDVLLNRSPVTKRFYKAKSDYVREPMPEIAFEGIFELFNEKEGGNAEIMLVPYGGKMSEIPESAIPFPHRAGNIYKMSPVVYWYEEGSETAERHINWIRKLHSFLTPFVSKNPRASYINYRDIDIGANKIRGYTSYKQASIWGRKYFRNNFDRLVVVKTMVDPHNFFRNEQS*************
SADAQENFLQCLLQNSDNSTTSISKVIYTQNNSSYSSILDFTIQNRRFLTAATPKPQVIVKPLQVSHIQSVIFCSQWHGMQVRVRSGGHDYEGLSYISHVPYVVIDLINLRSISIDVEKTTAWIQAGATIGELYHKIADTSGTLGFPAGVCPSVGVGGHFSGGGYGILLRKYGLAADHVVDAHLVDVKGRLLDRKSMGEDLFWAIRGGGGASFGVIVAWKVELVTIPSTVTVCSSRRSLKRNLTRLVHRWQFVADKFDEDLITGVFLSSVNASTGGNRTVIASFESVFLGGVDGVIPLMQKSFPELGLVEKECTETSWVRAVLHHARFPIEASLDVLLNRSPVTKRFYKAKSDYVREPMPEIAFEGIFELFNEKEGGNAEIMLVPYGGKMSEIPESAIPFPHRAGNIYKMSPVVYWYEEGSETAERHINWIRKLHSFLTPFVSKNPRASYINYRDIDIGANKIRGYTSYKQASIWGRKYFRNNFDRLVVVKTMVDPHNFFRNEQSI************
***AQENFLQCLLQNSDNSTTSISKVIYTQNNSSYSSILDFTIQNRRFLTAATPKPQVIVKPLQVSHIQSVIFCSQWHGMQVRVRSGGHDYEGLSYISHVPYVVIDLINLRSISIDVEKTTAWIQAGATIGELYHKIADTSGTLGFPAGVCPSVGVGGHFSGGGYGILLRKYGLAADHVVDAHLVDVKGRLLDRKSMGEDLFWAIRGGGGASFGVIVAWKVELVTIPSTVTVCSSRRSLKRNLTRLVHRWQFVADKFDEDLITGVFLSSVNASTGGNRTVIASFESVFLGGVDGVIPLMQKSFPELGLVEKECTETSWVRAVLHHARFPIEASLDVLLNRSPVTKRFYKAKSDYVREPMPEIAFEGIFELFNEKEGGNAEIMLVPYGGKMSEIPESAIPFPHRAGNIYKMSPVVYWYEEGSETAERHINWIRKLHSFLTPFVSKNPRASYINYRDIDIGANKIRGYTSYKQASIWGRKYFRNNFDRLVVVKTMVDPHNFFRNEQSIPSL*********
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SADAQENFLQCLLQNSDNSTTSISKVIYTQNNSSYSSILDFTIQNRRFLTAATPKPQVIVKPLQVSHIQSVIFCSQWHGMQVRVRSGGHDYEGLSYISHVPYVVIDLINLRSISIDVEKTTAWIQAGATIGELYHKIADTSGTLGFPAGVCPSVGVGGHFSGGGYGILLRKYGLAADHVVDAHLVDVKGRLLDRKSMGEDLFWAIRGGGGASFGVIVAWKVELVTIPSTVTVCSSRRSLKRNLTRLVHRWQFVADKFDEDLITGVFLSSVNASTGGNRTVIASFESVFLGGVDGVIPLMQKSFPELGLVEKECTETSWVRAVLHHARFPIEASLDVLLNRSPVTKRFYKAKSDYVREPMPEIAFEGIFELFNEKEGGNAEIMLVPYGGKMSEIPESAIPFPHRAGNIYKMSPVVYWYEEGSETAERHINWIRKLHSFLTPFVSKNPRASYINYRDIDIGANKIRGYTSYKQASIWGRKYFRNNFDRLVVVKTMVDPHNFFRNEQSIPSLSSWRKQKDD
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query518 2.2.26 [Sep-21-2011]
A6P6V9544 Cannabidiolic acid syntha N/A no 0.982 0.935 0.514 1e-148
A6P6W0545 Cannabidiolic acid syntha N/A no 0.974 0.926 0.511 1e-146
A6P6W1545 Cannabidiolic acid syntha N/A no 0.974 0.926 0.509 1e-145
Q8GTB6545 Tetrahydrocannabinolic ac N/A no 0.967 0.919 0.513 1e-144
Q33DQ2545 Inactive tetrahydrocannab N/A no 0.967 0.919 0.505 1e-143
Q9SVG4570 Reticuline oxidase-like p no no 0.963 0.875 0.459 1e-117
P93479535 Reticuline oxidase OS=Pap N/A no 0.951 0.921 0.407 8e-98
P30986538 Reticuline oxidase OS=Esc N/A no 0.947 0.912 0.390 2e-94
O06997447 Uncharacterized FAD-linke yes no 0.750 0.870 0.265 2e-19
Q796Y5451 Uncharacterized FAD-linke no no 0.727 0.835 0.279 4e-19
>sp|A6P6V9|CBDAS_CANSA Cannabidiolic acid synthase OS=Cannabis sativa GN=CBDAS PE=1 SV=1 Back     alignment and function desciption
 Score =  525 bits (1352), Expect = e-148,   Method: Compositional matrix adjust.
 Identities = 267/519 (51%), Positives = 361/519 (69%), Gaps = 10/519 (1%)

Query: 2   ADAQENFLQCLLQNSDNSTTSISKVIYTQNNSSYSSILDFTIQNRRFLTAATPKPQVIVK 61
           A+ +ENFL+C  Q   N+ T++ K++YTQNN  Y S+L+ TI N RF +  TPKP VIV 
Sbjct: 28  ANPRENFLKCFSQYIPNNATNL-KLVYTQNNPLYMSVLNSTIHNLRFTSDTTPKPLVIVT 86

Query: 62  PLQVSHIQSVIFCSQWHGMQVRVRSGGHDYEGLSYISHVPYVVIDLINLRSISIDVEKTT 121
           P  VSHIQ  I CS+  G+Q+R RSGGHD EG+SYIS VP+V++DL N+RSI IDV   T
Sbjct: 87  PSHVSHIQGTILCSKKVGLQIRTRSGGHDSEGMSYISQVPFVIVDLRNMRSIKIDVHSQT 146

Query: 122 AWIQAGATIGELYHKIADTSGTLGFPAGVCPSVGVGGHFSGGGYGILLRKYGLAADHVVD 181
           AW++AGAT+GE+Y+ + + +  L   AG CP+V  GGHF GGGYG L+R YGLAAD+++D
Sbjct: 147 AWVEAGATLGEVYYWVNEKNENLSLAAGYCPTVCAGGHFGGGGYGPLMRNYGLAADNIID 206

Query: 182 AHLVDVKGRLLDRKSMGEDLFWAIRGGGGASFGVIVAWKVELVTIPSTVTVCSSRRSLKR 241
           AHLV+V G++LDRKSMGEDLFWA+RGGG  SFG+IVAWK+ LV +P +      +     
Sbjct: 207 AHLVNVHGKVLDRKSMGEDLFWALRGGGAESFGIIVAWKIRLVAVPKSTMFSVKKIMEIH 266

Query: 242 NLTRLVHRWQFVADKFDEDLI--TGVFLSSVNASTGGNRTVIAS-FESVFLGGVDGVIPL 298
            L +LV++WQ +A K+D+DL+  T     ++  + G N+T I + F SVFLGGVD ++ L
Sbjct: 267 ELVKLVNKWQNIAYKYDKDLLLMTHFITRNITDNQGKNKTAIHTYFSSVFLGGVDSLVDL 326

Query: 299 MQKSFPELGLVEKECTETSWVRAVLHHA---RFPIEA-SLDVLLNRSPVTKRFYKAKSDY 354
           M KSFPELG+ + +C + SW+  ++ ++    +  +  + ++LL+RS      +K K DY
Sbjct: 327 MNKSFPELGIKKTDCRQLSWIDTIIFYSGVVNYDTDNFNKEILLDRSAGQNGAFKIKLDY 386

Query: 355 VREPMPEIAFEGIFELFNEKEGGNAEIMLVPYGGKMSEIPESAIPFPHRAGNIYKMSPVV 414
           V++P+PE  F  I E   E++ G     L PYGG M EI ESAIPFPHRAG +Y++  + 
Sbjct: 387 VKKPIPESVFVQILEKLYEEDIGAGMYALYPYGGIMDEISESAIPFPHRAGILYELWYIC 446

Query: 415 YWYEEGSETAERHINWIRKLHSFLTPFVSKNPRASYINYRDIDIGANKIRGYTSYKQASI 474
            W  E  E  E+H+NWIR +++F+TP+VSKNPR +Y+NYRD+DIG N  +   +Y QA I
Sbjct: 447 SW--EKQEDNEKHLNWIRNIYNFMTPYVSKNPRLAYLNYRDLDIGINDPKNPNNYTQARI 504

Query: 475 WGRKYFRNNFDRLVVVKTMVDPHNFFRNEQSIPSLSSWR 513
           WG KYF  NFDRLV VKT+VDP+NFFRNEQSIP L   R
Sbjct: 505 WGEKYFGKNFDRLVKVKTLVDPNNFFRNEQSIPPLPRHR 543
Catalyzes the stereoselective oxidative cyclization of the monoterpene moiety in cannabigerolic acid (CBGA), producing cannabidiolate (CBDA), the major cannabioid in fiber-type Cannabis plants. Can also use cannabinerolic acid as substrate, but not cannabigerol or cannabinerol.
Cannabis sativa (taxid: 3483)
EC: 1EC: .EC: 2EC: 1EC: .EC: 3EC: .EC: 8
>sp|A6P6W0|CASL1_CANSA Cannabidiolic acid synthase-like 1 OS=Cannabis sativa GN=CBDAS2 PE=2 SV=1 Back     alignment and function description
>sp|A6P6W1|CASL2_CANSA Cannabidiolic acid synthase-like 2 OS=Cannabis sativa GN=CBDAS3 PE=2 SV=1 Back     alignment and function description
>sp|Q8GTB6|THCAS_CANSA Tetrahydrocannabinolic acid synthase OS=Cannabis sativa PE=1 SV=1 Back     alignment and function description
>sp|Q33DQ2|THCAI_CANSA Inactive tetrahydrocannabinolic acid synthase OS=Cannabis sativa PE=3 SV=1 Back     alignment and function description
>sp|Q9SVG4|RETOL_ARATH Reticuline oxidase-like protein OS=Arabidopsis thaliana GN=At4g20830 PE=1 SV=2 Back     alignment and function description
>sp|P93479|RETO_PAPSO Reticuline oxidase OS=Papaver somniferum GN=BBE1 PE=3 SV=1 Back     alignment and function description
>sp|P30986|RETO_ESCCA Reticuline oxidase OS=Eschscholzia californica GN=BBE1 PE=1 SV=1 Back     alignment and function description
>sp|O06997|YVDP_BACSU Uncharacterized FAD-linked oxidoreductase YvdP OS=Bacillus subtilis (strain 168) GN=yvdP PE=1 SV=1 Back     alignment and function description
>sp|Q796Y5|YGAK_BACSU Uncharacterized FAD-linked oxidoreductase YgaK OS=Bacillus subtilis (strain 168) GN=ygaK PE=3 SV=4 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query518
224115242527 predicted protein [Populus trichocarpa] 0.982 0.965 0.647 0.0
356528090538 PREDICTED: reticuline oxidase-like prote 0.984 0.947 0.641 0.0
224122378535 predicted protein [Populus trichocarpa] 0.984 0.953 0.634 0.0
224103509531 predicted protein [Populus trichocarpa] 0.980 0.956 0.615 0.0
359483744538 PREDICTED: LOW QUALITY PROTEIN: reticuli 0.982 0.946 0.632 0.0
224061593531 predicted protein [Populus trichocarpa] 0.978 0.954 0.608 0.0
224056783533 predicted protein [Populus trichocarpa] 0.980 0.953 0.609 0.0
358348153543 Reticuline oxidase [Medicago truncatula] 0.971 0.926 0.631 0.0
224122382534 predicted protein [Populus trichocarpa] 0.984 0.955 0.615 0.0
356510754538 PREDICTED: reticuline oxidase-like prote 0.982 0.946 0.631 0.0
>gi|224115242|ref|XP_002332196.1| predicted protein [Populus trichocarpa] gi|222875303|gb|EEF12434.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
 Score =  677 bits (1748), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 333/514 (64%), Positives = 419/514 (81%), Gaps = 5/514 (0%)

Query: 1   SADAQENFLQCLLQNSDNSTTSISKVIYTQNNSSYSSILDFTIQNRRFLTAATPKPQVIV 60
           SA   E+FLQCL  +S NS  SISK+IYT  NSSYSSIL F+IQN RF T++TPKP VIV
Sbjct: 17  SAHTHESFLQCL--DSQNS-HSISKLIYTPINSSYSSILQFSIQNLRFNTSSTPKPLVIV 73

Query: 61  KPLQVSHIQSVIFCSQWHGMQVRVRSGGHDYEGLSYISHVPYVVIDLINLRSISIDVEKT 120
            P  +SHIQ+ I CSQ HGMQ+R+RSGGHDYEGLSY+S   +VVIDLINLR+I+++ E  
Sbjct: 74  TPTNISHIQAAIICSQKHGMQIRIRSGGHDYEGLSYVSTFSFVVIDLINLRTINVNAENK 133

Query: 121 TAWIQAGATIGELYHKIADTSGTLGFPAGVCPSVGVGGHFSGGGYGILLRKYGLAADHVV 180
           TAW+Q+G TIGE+Y++IA+ S TL FPA VCP+VGVGGHFSGGGYG+L+RKYGLAADH++
Sbjct: 134 TAWVQSGVTIGEVYYRIAEKSRTLAFPASVCPTVGVGGHFSGGGYGMLMRKYGLAADHII 193

Query: 181 DAHLVDVKGRLLDRKSMGEDLFWAIRGGGGASFGVIVAWKVELVTIPSTVTVCSSRRSLK 240
           DA LVDVKGR+LDR+SMGEDLFWAIRGGGG +FGV++AWK+ LV+ P TVTV + +R+L+
Sbjct: 194 DAQLVDVKGRILDRESMGEDLFWAIRGGGGNTFGVVIAWKISLVSAPPTVTVFNVQRTLE 253

Query: 241 RNLTRLVHRWQFVADKFDEDLITGVFLSSVNASTGG--NRTVIASFESVFLGGVDGVIPL 298
           +N ++LVHRWQFVADK  EDL   + L+ VN++  G  N T+ ASF S+FLGG+D ++PL
Sbjct: 254 QNASKLVHRWQFVADKLHEDLFIRIILNRVNSTEEGKSNTTIQASFNSLFLGGIDRLLPL 313

Query: 299 MQKSFPELGLVEKECTETSWVRAVLHHARFPIEASLDVLLNRSPVTKRFYKAKSDYVREP 358
           +Q SFPELGLV+++C E SW+++VL+   FP  +SLDVLL+R+P T+R +KAKSDYV+EP
Sbjct: 314 IQDSFPELGLVKEDCIEMSWIQSVLYFDGFPSNSSLDVLLDRTPSTRRNFKAKSDYVKEP 373

Query: 359 MPEIAFEGIFELFNEKEGGNAEIMLVPYGGKMSEIPESAIPFPHRAGNIYKMSPVVYWYE 418
           +PE+  EGI+E F +K+     ++  PYGGKMSEI ES+IPFPHRAGNIYK+  ++YW E
Sbjct: 374 IPELGLEGIWERFFDKDINTPILIFSPYGGKMSEISESSIPFPHRAGNIYKIQHLIYWDE 433

Query: 419 EGSETAERHINWIRKLHSFLTPFVSKNPRASYINYRDIDIGANKIRGYTSYKQASIWGRK 478
           EG    +RHI+WIR+L+S+L P+VSK PRA+Y+NYRD+DIG N   G TSY+QASIWG K
Sbjct: 434 EGIVATKRHISWIRRLYSYLAPYVSKTPRAAYVNYRDLDIGINNHAGNTSYRQASIWGLK 493

Query: 479 YFRNNFDRLVVVKTMVDPHNFFRNEQSIPSLSSW 512
           YF+NNFDRLV VKT VDP NFFRNEQSIP LSSW
Sbjct: 494 YFKNNFDRLVRVKTAVDPANFFRNEQSIPPLSSW 527

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|356528090|ref|XP_003532638.1| PREDICTED: reticuline oxidase-like protein-like [Glycine max] Back     alignment and taxonomy information
>gi|224122378|ref|XP_002330608.1| predicted protein [Populus trichocarpa] gi|222872166|gb|EEF09297.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|224103509|ref|XP_002334045.1| predicted protein [Populus trichocarpa] gi|222839749|gb|EEE78072.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|359483744|ref|XP_003633009.1| PREDICTED: LOW QUALITY PROTEIN: reticuline oxidase-like protein-like [Vitis vinifera] Back     alignment and taxonomy information
>gi|224061593|ref|XP_002300557.1| predicted protein [Populus trichocarpa] gi|222847815|gb|EEE85362.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|224056783|ref|XP_002299021.1| predicted protein [Populus trichocarpa] gi|222846279|gb|EEE83826.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|358348153|ref|XP_003638113.1| Reticuline oxidase [Medicago truncatula] gi|355504048|gb|AES85251.1| Reticuline oxidase [Medicago truncatula] Back     alignment and taxonomy information
>gi|224122382|ref|XP_002330609.1| predicted protein [Populus trichocarpa] gi|222872167|gb|EEF09298.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|356510754|ref|XP_003524099.1| PREDICTED: reticuline oxidase-like protein-like [Glycine max] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query518
TAIR|locus:2158720541 AT5G44380 [Arabidopsis thalian 0.971 0.929 0.444 1.3e-123
TAIR|locus:2158740537 AT5G44400 [Arabidopsis thalian 0.967 0.932 0.450 4.4e-123
TAIR|locus:2163441533 AT5G44440 [Arabidopsis thalian 0.955 0.928 0.460 6.5e-122
TAIR|locus:2121534532 AT4G20820 [Arabidopsis thalian 0.945 0.921 0.452 9.5e-121
TAIR|locus:2044692532 MEE23 "MATERNAL EFFECT EMBRYO 0.963 0.937 0.432 2.5e-120
TAIR|locus:2158730542 AT5G44390 [Arabidopsis thalian 0.971 0.928 0.423 1.3e-118
TAIR|locus:2204579534 AT1G30760 [Arabidopsis thalian 0.957 0.928 0.421 4.9e-117
TAIR|locus:2204604527 AT1G30700 [Arabidopsis thalian 0.967 0.950 0.440 7.9e-117
TAIR|locus:2163411535 AT5G44410 [Arabidopsis thalian 0.942 0.912 0.441 1.6e-116
TAIR|locus:2133044530 AT4G20860 [Arabidopsis thalian 0.967 0.945 0.437 5.6e-116
TAIR|locus:2158720 AT5G44380 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 1215 (432.8 bits), Expect = 1.3e-123, P = 1.3e-123
 Identities = 229/515 (44%), Positives = 340/515 (66%)

Query:     1 SADAQENFLQCLLQNSDNSTTSISKVIYT--QNNSSYSSILDFTIQNRRFLTAATPKPQV 58
             SA  Q+ F+ C+ +N+  S   + K ++T  +N S ++ +L+ T QN +FL  + PKP  
Sbjct:    31 SASIQDQFINCVKRNTHVSFP-LEKTLFTPAKNVSLFNQVLESTAQNLQFLAKSMPKPGF 89

Query:    59 IVKPLQVSHIQSVIFCSQWHGMQVRVRSGGHDYEGLSYISHV--PYVVIDLINLRSISID 116
             I +P+  S +Q+ I CS+  G+  RVRSGGHD+E LSY+S +  P++++DL  L+ I++D
Sbjct:    90 IFRPIHQSQVQASIICSKKLGIHFRVRSGGHDFEALSYVSRIEKPFILLDLSKLKQINVD 149

Query:   117 VEKTTAWIQAGATIGELYHKIADTSGTLGFPAGVCPSVXXXXXXXXXXXXILLRKYGXXX 176
             +E  +AW+Q GAT+GELY++IA+ S   GFPAG+C SV             L+RKYG   
Sbjct:   150 IESNSAWVQPGATLGELYYRIAEKSKIHGFPAGLCTSVGIGGYMTGGGYGTLMRKYGLAG 209

Query:   177 XXXXXXXXXXXKGRLLDRKSMGEDLFWAIRGGGGASFGVIVAWKVELVTIPSTVTVCSSR 236
                         G+LLDR +MGEDLFWAIRGGGGASFG+++AWK++LV +P TVTV +  
Sbjct:   210 DNVLDVKMVDANGKLLDRAAMGEDLFWAIRGGGGASFGIVLAWKIKLVPVPKTVTVFTVT 269

Query:   237 RSLKRNLT-RLVHRWQFVADKFDEDLITGVFLSSVNASTGGNRTVIASFESVFLGGVDGV 295
             ++L+++   + + +WQ ++ K  E++   V L +  A   GN+TV  ++   FLG    +
Sbjct:   270 KTLEQDARLKTISKWQQISSKIIEEIHIRVVLRA--AGNDGNKTVTMTYLGQFLGEKGTL 327

Query:   296 IPLMQKSFPELGLVEKECTETSWVRAVLHHARFPIEASLDVLLN-RSPVTKRFYKAKSDY 354
             + +M+K+FPELGL +K+CTE SW+ A L H  FP  + +++LL  +SP+ K ++KA SD+
Sbjct:   328 LKVMEKAFPELGLTQKDCTEMSWIEAALFHGGFPTGSPIEILLQLKSPLGKDYFKATSDF 387

Query:   355 VREPMPEIAFEGIFELFNEKEGGNAEIMLVPYGGKMSEIPESAIPFPHRAGNIYKMSPVV 414
             V+EP+P I  +GIF+   E  G    +   PYGG MS+IPESAIPFPHR G ++K+    
Sbjct:   388 VKEPIPVIGLKGIFKRLIE--GNTTFLNWTPYGGMMSKIPESAIPFPHRNGTLFKILYYA 445

Query:   415 YWYEEGSETAERHINWIRKLHSFLTPFVSKNPRASYINYRDIDIGANKIRGYTSYKQASI 474
              W E   +T+ R INWI+++++++ P+VS NPR +Y+NYRD+D G NK     ++ +A I
Sbjct:   446 NWLEN-DKTSSRKINWIKEIYNYMAPYVSSNPRQAYVNYRDLDFGQNKNNAKVNFIEAKI 504

Query:   475 WGRKYFRNNFDRLVVVKTMVDPHNFFRNEQSIPSL 509
             WG KYF+ NFDRLV +KT VDP NFFR+EQSIP +
Sbjct:   505 WGPKYFKGNFDRLVKIKTKVDPENFFRHEQSIPPM 539
GO:0003824 "catalytic activity" evidence=IEA
GO:0005737 "cytoplasm" evidence=ISM
GO:0008762 "UDP-N-acetylmuramate dehydrogenase activity" evidence=IEA
GO:0009055 "electron carrier activity" evidence=ISS
GO:0016491 "oxidoreductase activity" evidence=IEA
GO:0016614 "oxidoreductase activity, acting on CH-OH group of donors" evidence=IEA
GO:0050660 "flavin adenine dinucleotide binding" evidence=IEA
GO:0055114 "oxidation-reduction process" evidence=IEA
GO:0005618 "cell wall" evidence=IDA
GO:0006979 "response to oxidative stress" evidence=IEP
GO:0009506 "plasmodesma" evidence=IDA
GO:0010167 "response to nitrate" evidence=RCA
GO:0015706 "nitrate transport" evidence=RCA
TAIR|locus:2158740 AT5G44400 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2163441 AT5G44440 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2121534 AT4G20820 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2044692 MEE23 "MATERNAL EFFECT EMBRYO ARREST 23" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2158730 AT5G44390 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2204579 AT1G30760 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2204604 AT1G30700 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2163411 AT5G44410 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2133044 AT4G20860 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q8GTB6THCAS_CANSA1, ., 2, 1, ., 3, ., 70.51340.96710.9192N/Ano
A6P6W0CASL1_CANSANo assigned EC number0.51160.97490.9266N/Ano
A6P6W1CASL2_CANSANo assigned EC number0.50960.97490.9266N/Ano
Q33DQ2THCAI_CANSANo assigned EC number0.50570.96710.9192N/Ano
A6P6V9CBDAS_CANSA1, ., 2, 1, ., 3, ., 80.51440.98260.9356N/Ano

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

Prediction LevelEC numberConfidence of Prediction
3rd Layer1.21.3LOW CONFIDENCE prediction!
3rd Layer1.21.3.3LOW CONFIDENCE prediction!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query518
pfam01565139 pfam01565, FAD_binding_4, FAD binding domain 5e-28
COG0277459 COG0277, GlcD, FAD/FMN-containing dehydrogenases [ 8e-22
pfam0803145 pfam08031, BBE, Berberine and berberine like 4e-18
PLN02805555 PLN02805, PLN02805, D-lactate dehydrogenase [cytoc 0.003
>gnl|CDD|216574 pfam01565, FAD_binding_4, FAD binding domain Back     alignment and domain information 
 Score =  108 bits (272), Expect = 5e-28
 Identities = 41/139 (29%), Positives = 67/139 (48%), Gaps = 3/139 (2%)

Query: 56  PQVIVKPLQVSHIQSVIFCSQWHGMQVRVRSGGHDYEGLSYISHVPYVVIDLINL-RSIS 114
           P  +V+P     + +++  +  +G+ V VR GG    G + ++    VV+DL  L   + 
Sbjct: 1   PAAVVRPESEEEVAAIVRLANENGLPVLVRGGGSSLLGDAVLT--GGVVLDLSRLNGILE 58

Query: 115 IDVEKTTAWIQAGATIGELYHKIADTSGTLGFPAGVCPSVGVGGHFSGGGYGILLRKYGL 174
           ID E  TA ++AG T+G+L   +A     LG   G      VGG  +  G G    +YGL
Sbjct: 59  IDPEDGTATVEAGVTLGDLVRALAAKGLLLGLEPGSGIPGTVGGAIATNGGGYGSERYGL 118

Query: 175 AADHVVDAHLVDVKGRLLD 193
             D+V+   +V   G ++ 
Sbjct: 119 TRDNVLSLEVVLADGEVVR 137

This family consists of various enzymes that use FAD as a co-factor, most of the enzymes are similar to oxygen oxidoreductase. One of the enzymes Vanillyl-alcohol oxidase (VAO) has a solved structure, the alignment includes the FAD binding site, called the PP-loop, between residues 99-110. The FAD molecule is covalently bound in the known structure, however the residue that links to the FAD is not in the alignment. VAO catalyzes the oxidation of a wide variety of substrates, ranging form aromatic amines to 4-alkylphenols. Other members of this family include D-lactate dehydrogenase, this enzyme catalyzes the conversion of D-lactate to pyruvate using FAD as a co-factor; mitomycin radical oxidase, this enzyme oxidises the reduced form of mitomycins and is involved in mitomycin resistance. This family includes MurB an UDP-N-acetylenolpyruvoylglucosamine reductase enzyme EC:1.1.1.158. This enzyme is involved in the biosynthesis of peptidoglycan. Length = 139
>gnl|CDD|223354 COG0277, GlcD, FAD/FMN-containing dehydrogenases [Energy production and conversion] Back     alignment and domain information
>gnl|CDD|219706 pfam08031, BBE, Berberine and berberine like Back     alignment and domain information
>gnl|CDD|178402 PLN02805, PLN02805, D-lactate dehydrogenase [cytochrome] Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 518
PLN02441525 cytokinin dehydrogenase 100.0
TIGR01678438 FAD_lactone_ox sugar 1,4-lactone oxidases. This mo 100.0
TIGR01679419 bact_FAD_ox FAD-linked oxidoreductase. This model 100.0
PLN02805555 D-lactate dehydrogenase [cytochrome] 100.0
COG0277459 GlcD FAD/FMN-containing dehydrogenases [Energy pro 100.0
TIGR01676541 GLDHase galactonolactone dehydrogenase. This model 100.0
PRK11230499 glycolate oxidase subunit GlcD; Provisional 100.0
TIGR01677557 pln_FAD_oxido plant-specific FAD-dependent oxidore 99.98
TIGR00387413 glcD glycolate oxidase, subunit GlcD. This protein 99.97
PRK11282352 glcE glycolate oxidase FAD binding subunit; Provis 99.97
KOG1231505 consensus Proteins containing the FAD binding doma 99.97
PLN02465573 L-galactono-1,4-lactone dehydrogenase 99.97
PF01565139 FAD_binding_4: FAD binding domain This is only a s 99.95
PRK13905298 murB UDP-N-acetylenolpyruvoylglucosamine reductase 99.93
PRK11183564 D-lactate dehydrogenase; Provisional 99.93
KOG4730518 consensus D-arabinono-1, 4-lactone oxidase [Defens 99.9
KOG1232511 consensus Proteins containing the FAD binding doma 99.89
KOG1233613 consensus Alkyl-dihydroxyacetonephosphate synthase 99.89
TIGR00179284 murB UDP-N-acetylenolpyruvoylglucosamine reductase 99.88
PRK12436305 UDP-N-acetylenolpyruvoylglucosamine reductase; Pro 99.88
PRK14652302 UDP-N-acetylenolpyruvoylglucosamine reductase; Pro 99.87
PRK13906307 murB UDP-N-acetylenolpyruvoylglucosamine reductase 99.87
PRK13903363 murB UDP-N-acetylenolpyruvoylglucosamine reductase 99.86
PRK14649295 UDP-N-acetylenolpyruvoylglucosamine reductase; Pro 99.83
PRK14653297 UDP-N-acetylenolpyruvoylglucosamine reductase; Pro 99.77
COG0812291 MurB UDP-N-acetylmuramate dehydrogenase [Cell enve 99.73
PRK14650302 UDP-N-acetylenolpyruvoylglucosamine reductase; Pro 99.71
PRK00046334 murB UDP-N-acetylenolpyruvoylglucosamine reductase 99.7
PRK14648354 UDP-N-acetylenolpyruvoylglucosamine reductase; Pro 99.67
PF0803147 BBE: Berberine and berberine like ; InterPro: IPR0 99.65
KOG1262543 consensus FAD-binding protein DIMINUTO [General fu 99.64
PRK14651273 UDP-N-acetylenolpyruvoylglucosamine reductase; Pro 99.54
PRK13904257 murB UDP-N-acetylenolpyruvoylglucosamine reductase 99.27
PF00941171 FAD_binding_5: FAD binding domain in molybdopterin 96.38
TIGR03312257 Se_sel_red_FAD probable selenate reductase, FAD-bi 95.48
PRK09799258 putative oxidoreductase; Provisional 94.9
PRK09971291 xanthine dehydrogenase subunit XdhB; Provisional 94.49
TIGR02963467 xanthine_xdhA xanthine dehydrogenase, small subuni 92.91
TIGR03195321 4hydrxCoA_B 4-hydroxybenzoyl-CoA reductase, beta s 90.68
PF09265281 Cytokin-bind: Cytokinin dehydrogenase 1, FAD and c 89.75
TIGR03199264 pucC xanthine dehydrogenase C subunit. This gene h 89.39
PF04030259 ALO: D-arabinono-1,4-lactone oxidase ; InterPro: I 85.62
PLN02906 1319 xanthine dehydrogenase 84.03
PLN00192 1344 aldehyde oxidase 82.32
PF02913248 FAD-oxidase_C: FAD linked oxidases, C-terminal dom 81.87
TIGR02969 1330 mam_aldehyde_ox aldehyde oxidase. Members of this 81.72
PLN00107257 FAD-dependent oxidoreductase; Provisional 80.64
>PLN02441 cytokinin dehydrogenase Back     alignment and domain information 
Probab=100.00  E-value=8.2e-39  Score=335.42  Aligned_cols=209  Identities=22%  Similarity=0.278  Sum_probs=178.1

Q ss_pred             CCCchhhHHhhcccccccccCCCCCCcEEEecCCHHHHHHHHHHHH--HcCCeEEEEeCCCCCCCCCcccCCCeEEEEcc
Q 042207           31 NNSSYSSILDFTIQNRRFLTAATPKPQVIVKPLQVSHIQSVIFCSQ--WHGMQVRVRSGGHDYEGLSYISHVPYVVIDLI  108 (518)
Q Consensus        31 ~~~~y~~~~~~~~~n~~~~~~~~~~p~~vv~p~~~~dv~~~v~~a~--~~~~~~~~~g~Gh~~~g~~~~~~~~~vvidl~  108 (518)
                      ++.++..+.      ..|+......|.+|++|+|++||+++|++|+  +++++|++||+|||+.|.+...+  |++|||+
T Consensus        46 d~~~~~~~s------~d~g~~~~~~P~aVv~P~S~eDVa~iVr~A~~~~~~~~V~~rGgGHS~~G~a~~~~--GivIdms  117 (525)
T PLN02441         46 DPVSTASAS------KDFGNLVHSLPAAVLYPSSVEDIASLVRAAYGSSSPLTVAARGHGHSLNGQAQAPG--GVVVDMR  117 (525)
T ss_pred             CHHHHHHHh------cCcccccCCCCCEEEeCCCHHHHHHHHHHHhhccCCceEEEECCCcCCCCCccCCC--eEEEECC
Confidence            344555553      3588888889999999999999999999997  67999999999999999888765  9999999


Q ss_pred             CCcc-------eEEeCCCcEEEEeCCCcHHHHHHHHHhhCCCcee-cCCCCCCccchhhhcCCCCCCccccCCcccccee
Q 042207          109 NLRS-------ISIDVEKTTAWIQAGATIGELYHKIADTSGTLGF-PAGVCPSVGVGGHFSGGGYGILLRKYGLAADHVV  180 (518)
Q Consensus       109 ~~~~-------i~~d~~~~~v~v~~G~~~~~l~~~l~~~g~~l~~-~~g~~~~vgigG~~~ggg~g~~~~~~G~~~d~v~  180 (518)
                      +||+       +++|.+..+|+|++|++|.+|++++.++|  +++ ..+....++|||.+++||+|..+.+||..+|+|+
T Consensus       118 ~Ln~i~~~~~ii~vd~~~~~VtV~aG~~~~dv~~~l~~~G--laP~~~~d~~~~TVGG~ist~G~gg~s~ryG~~~d~Vl  195 (525)
T PLN02441        118 SLRGGVRGPPVIVVSGDGPYVDVSGGELWIDVLKATLKHG--LAPRSWTDYLYLTVGGTLSNAGISGQAFRHGPQISNVL  195 (525)
T ss_pred             CCCCcCccCceEEEcCCCCEEEEcCCCCHHHHHHHHHHCC--CccCCccccCceEEeEEcCCCCccccccccCcHHHhEE
Confidence            9999       47888999999999999999999999987  433 2355567899999999999999999999999999


Q ss_pred             EEEEEeeCCeEEe-ccCCCchhHHHhhccCCCCeEEEEEEEEEEEecCCeeEEEEEeechhhhHHHHHHHH
Q 042207          181 DAHLVDVKGRLLD-RKSMGEDLFWAIRGGGGASFGVIVAWKVELVTIPSTVTVCSSRRSLKRNLTRLVHRW  250 (518)
Q Consensus       181 ~~~vV~~~G~i~~-~~~~~~dl~~a~rg~~~g~~Givt~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~  250 (518)
                      +++||+++|++++ ++++|+|||||++|| +|+|||||++|||++|.|+....+.+.|..-..+.+-++++
T Consensus       196 ~leVVtadGevv~~s~~~n~DLF~Av~Gg-lG~fGIIT~atlrL~Pap~~v~~~~~~y~~~~~~~~d~~~l  265 (525)
T PLN02441        196 ELDVVTGKGEVVTCSPTQNSDLFFAVLGG-LGQFGIITRARIALEPAPKRVRWIRVLYSDFSTFTRDQERL  265 (525)
T ss_pred             EEEEEeCCceEEEeCCCCChhHHHhhccC-CCCcEEEEEEEEEEEecCCceEEEEEEcCCHHHHHHHHHHH
Confidence            9999999999999 888899999999998 68999999999999999997766666665433333333333

>TIGR01678 FAD_lactone_ox sugar 1,4-lactone oxidases Back     alignment and domain information
>TIGR01679 bact_FAD_ox FAD-linked oxidoreductase Back     alignment and domain information
>PLN02805 D-lactate dehydrogenase [cytochrome] Back     alignment and domain information
>COG0277 GlcD FAD/FMN-containing dehydrogenases [Energy production and conversion] Back     alignment and domain information
>TIGR01676 GLDHase galactonolactone dehydrogenase Back     alignment and domain information
>PRK11230 glycolate oxidase subunit GlcD; Provisional Back     alignment and domain information
>TIGR01677 pln_FAD_oxido plant-specific FAD-dependent oxidoreductase Back     alignment and domain information
>TIGR00387 glcD glycolate oxidase, subunit GlcD Back     alignment and domain information
>PRK11282 glcE glycolate oxidase FAD binding subunit; Provisional Back     alignment and domain information
>KOG1231 consensus Proteins containing the FAD binding domain [Energy production and conversion] Back     alignment and domain information
>PLN02465 L-galactono-1,4-lactone dehydrogenase Back     alignment and domain information
>PF01565 FAD_binding_4: FAD binding domain This is only a subset of the Pfam family; InterPro: IPR006094 Various enzymes use FAD as a co-factor, most of these enzymes are oxygen-dependent oxidoreductases, containing a covalently bound FAD group which is attached to a histidine via an 8-alpha-(N3-histidyl)-riboflavin linkage Back     alignment and domain information
>PRK13905 murB UDP-N-acetylenolpyruvoylglucosamine reductase; Provisional Back     alignment and domain information
>PRK11183 D-lactate dehydrogenase; Provisional Back     alignment and domain information
>KOG4730 consensus D-arabinono-1, 4-lactone oxidase [Defense mechanisms] Back     alignment and domain information
>KOG1232 consensus Proteins containing the FAD binding domain [Energy production and conversion] Back     alignment and domain information
>KOG1233 consensus Alkyl-dihydroxyacetonephosphate synthase [General function prediction only] Back     alignment and domain information
>TIGR00179 murB UDP-N-acetylenolpyruvoylglucosamine reductase Back     alignment and domain information
>PRK12436 UDP-N-acetylenolpyruvoylglucosamine reductase; Provisional Back     alignment and domain information
>PRK14652 UDP-N-acetylenolpyruvoylglucosamine reductase; Provisional Back     alignment and domain information
>PRK13906 murB UDP-N-acetylenolpyruvoylglucosamine reductase; Provisional Back     alignment and domain information
>PRK13903 murB UDP-N-acetylenolpyruvoylglucosamine reductase; Provisional Back     alignment and domain information
>PRK14649 UDP-N-acetylenolpyruvoylglucosamine reductase; Provisional Back     alignment and domain information
>PRK14653 UDP-N-acetylenolpyruvoylglucosamine reductase; Provisional Back     alignment and domain information
>COG0812 MurB UDP-N-acetylmuramate dehydrogenase [Cell envelope biogenesis, outer membrane] Back     alignment and domain information
>PRK14650 UDP-N-acetylenolpyruvoylglucosamine reductase; Provisional Back     alignment and domain information
>PRK00046 murB UDP-N-acetylenolpyruvoylglucosamine reductase; Provisional Back     alignment and domain information
>PRK14648 UDP-N-acetylenolpyruvoylglucosamine reductase; Provisional Back     alignment and domain information
>PF08031 BBE: Berberine and berberine like ; InterPro: IPR012951 This domain is found in the berberine bridge and berberine bridge-like enzymes, which are involved in the biosynthesis of numerous isoquinoline alkaloids Back     alignment and domain information
>KOG1262 consensus FAD-binding protein DIMINUTO [General function prediction only] Back     alignment and domain information
>PRK14651 UDP-N-acetylenolpyruvoylglucosamine reductase; Provisional Back     alignment and domain information
>PRK13904 murB UDP-N-acetylenolpyruvoylglucosamine reductase; Provisional Back     alignment and domain information
>PF00941 FAD_binding_5: FAD binding domain in molybdopterin dehydrogenase; InterPro: IPR002346 Oxidoreductases, that also bind molybdopterin, have essentially no similarity outside this common domain Back     alignment and domain information
>TIGR03312 Se_sel_red_FAD probable selenate reductase, FAD-binding subunit Back     alignment and domain information
>PRK09799 putative oxidoreductase; Provisional Back     alignment and domain information
>PRK09971 xanthine dehydrogenase subunit XdhB; Provisional Back     alignment and domain information
>TIGR02963 xanthine_xdhA xanthine dehydrogenase, small subunit Back     alignment and domain information
>TIGR03195 4hydrxCoA_B 4-hydroxybenzoyl-CoA reductase, beta subunit Back     alignment and domain information
>PF09265 Cytokin-bind: Cytokinin dehydrogenase 1, FAD and cytokinin binding; InterPro: IPR015345 This domain adopts an alpha+beta sandwich structure with an antiparallel beta-sheet, in a ferredoxin-like fold Back     alignment and domain information
>TIGR03199 pucC xanthine dehydrogenase C subunit Back     alignment and domain information
>PF04030 ALO: D-arabinono-1,4-lactone oxidase ; InterPro: IPR007173 This domain is specific to D-arabinono-1,4-lactone oxidase 1 Back     alignment and domain information
>PLN02906 xanthine dehydrogenase Back     alignment and domain information
>PLN00192 aldehyde oxidase Back     alignment and domain information
>PF02913 FAD-oxidase_C: FAD linked oxidases, C-terminal domain; InterPro: IPR004113 Some oxygen-dependent oxidoreductases are flavoproteins that contain a covalently bound FAD group which is attached to a histidine via an 8-alpha-(N3-histidyl)-riboflavin linkage Back     alignment and domain information
>TIGR02969 mam_aldehyde_ox aldehyde oxidase Back     alignment and domain information
>PLN00107 FAD-dependent oxidoreductase; Provisional Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query518
3vte_A518 Crystal Structure Of Tetrahydrocannabinolic Acid Sy 1e-138
4dns_A497 Crystal Structure Of Bermuda Grass Isoallergen Bg60 1e-118
3tsh_A500 Crystal Structure Of Phl P 4, A Grass Pollen Allerg 1e-114
3d2d_A538 Structure Of Berberine Bridge Enzyme In Complex Wit 7e-90
4ec3_A519 Structure Of Berberine Bridge Enzyme, H174a Variant 8e-90
3gsy_A519 Structure Of Berberine Bridge Enzyme In Complex Wit 8e-90
3fw9_A495 Structure Of Berberine Bridge Enzyme In Complex Wit 1e-88
3fw7_A498 Structure Of Berberine Bridge Enzyme, H104a Variant 5e-88
3fwa_A497 Structure Of Berberine Bridge Enzyme, C166a Variant 9e-88
3fw8_A495 Structure Of Berberine Bridge Enzyme, C166a Variant 1e-87
2ipi_A521 Crystal Structure Of Aclacinomycin Oxidoreductase L 3e-17
3rj8_A473 Crystal Structure Of Carbohydrate Oxidase From Micr 2e-14
2wdw_A523 The Native Crystal Structure Of The Primary Hexose 4e-13
2bvf_A459 Crystal Structure Of 6-Hydoxy-D-Nicotine Oxidase Fr 3e-10
3pop_A501 The Crystal Structure Of Gilr, An Oxidoreductase Th 6e-10
2y08_A530 Structure Of The Substrate-Free Fad-Dependent Tiran 1e-08
1zr6_A503 The Crystal Structure Of An Acremonium Strictum Glu 7e-08
3hsu_A503 Functional Roles Of The 6-S-Cysteinyl, 8 Alpha-N1-H 1e-06
>pdb|3VTE|A Chain A, Crystal Structure Of Tetrahydrocannabinolic Acid Synthase From Cannabis Sativa Length = 518 Back     alignment and structure 
Iteration: 1

 Score =  488 bits (1255), Expect = e-138,   Method: Compositional matrix adjust.
 Identities = 245/520 (47%), Positives = 336/520 (64%), Gaps = 19/520 (3%)
Query: 2   ADAQENFLQCLLQNSDNSTTSISKVIYTQNNSSYSSILDFTIQNRRFLTAATPKPQVIVK 61
           A+ +ENFL+C  ++  N+  +  K++YTQ++  Y SIL+ TIQN RF++  TPKP VIV 
Sbjct: 1   ANPRENFLKCFSKHIPNNVAN-PKLVYTQHDQLYMSILNSTIQNLRFISDTTPKPLVIVT 59
Query: 62  PLQVSHIQSVIFCSQWHGMQVRVRSGGHDYEGLSYISHVPYVVIDLINLRSISIDVEKTT 121
           P   SHIQ+ I CS+  G+Q+R RSGGHD EG+SYIS VP+VV+DL N+ SI IDV   T
Sbjct: 60  PSNNSHIQATILCSKKVGLQIRTRSGGHDAEGMSYISQVPFVVVDLRNMHSIKIDVHSQT 119
Query: 122 AWIQAGATIGELYHKIADTSGTLGFPAGVCPSVXXXXXXXXXXXXILLRKYGXXXXXXXX 181
           AW++AGAT+GE+Y+ I + +  L FP G CP+V             L+R YG        
Sbjct: 120 AWVEAGATLGEVYYWINEKNENLSFPGGYCPTVGVGGHFSGGGYGALMRNYGLAADNIID 179
Query: 182 XXXXXXKGRLLDRKSMGEDLFWAIRGGGGASFGVIVAWKVELVTIPSTVTVCSSRRSLK- 240
                  G++LDRKSMGEDLFWAIRGGGG +FG+I AWK++LV +PS  T+ S +++++ 
Sbjct: 180 AHLVNVDGKVLDRKSMGEDLFWAIRGGGGENFGIIAAWKIKLVAVPSKSTIFSVKKNMEI 239
Query: 241 RNLTRLVHRWQFVADKFDEDLI--TGVFLSSVNASTGGNRTVI-ASFESVFLGGVDGVIP 297
             L +L ++WQ +A K+D+DL+  T     ++  + G N+T +   F S+F GGVD ++ 
Sbjct: 240 HGLVKLFNKWQNIAYKYDKDLVLMTHFITKNITDNHGKNKTTVHGYFSSIFHGGVDSLVD 299
Query: 298 LMQKSFPELGLVEKECTETSWVRAVLHH--------ARFPIEASLDVLLNRSPVTKRFYK 349
           LM KSFPELG+ + +C E SW+   + +        A F  E    +LL+RS   K  + 
Sbjct: 300 LMNKSFPELGIKKTDCKEFSWIDTTIFYSGVVNFNTANFKKE----ILLDRSAGKKTAFS 355
Query: 350 AKSDYVREPMPEIAFEGIFELFNEKEGGNAEIMLVPYGGKMSEIPESAIPFPHRAGNIYK 409
            K DYV++P+PE A   I E   E++ G    +L PYGG M EI ESAIPFPHRAG +Y+
Sbjct: 356 IKLDYVKKPIPETAMVKILEKLYEEDVGAGMYVLYPYGGIMEEISESAIPFPHRAGIMYE 415
Query: 410 MSPVVYWYEEGSETAERHINWIRKLHSFLTPFVSKNPRASYINYRDIDIGANKIRGYTSY 469
           +     W  E  E  E+HINW+R +++F TP+VS+NPR +Y+NYRD+D+G        +Y
Sbjct: 416 LWYTASW--EKQEDNEKHINWVRSVYNFTTPYVSQNPRLAYLNYRDLDLGKTNHASPNNY 473
Query: 470 KQASIWGRKYFRNNFDRLVVVKTMVDPHNFFRNEQSIPSL 509
            QA IWG KYF  NF+RLV VKT VDP+NFFRNEQSIP L
Sbjct: 474 TQARIWGEKYFGKNFNRLVKVKTKVDPNNFFRNEQSIPPL 513
>pdb|4DNS|A Chain A, Crystal Structure Of Bermuda Grass Isoallergen Bg60 Provides Insight Into The Various Cross-Allergenicity Of The Pollen Group 4 Allergens Length = 497 Back     alignment and structure
>pdb|3TSH|A Chain A, Crystal Structure Of Phl P 4, A Grass Pollen Allergen With Glucose Dehydrogenase Activity Length = 500 Back     alignment and structure
>pdb|3D2D|A Chain A, Structure Of Berberine Bridge Enzyme In Complex With (S)-Reticuline Length = 538 Back     alignment and structure
>pdb|4EC3|A Chain A, Structure Of Berberine Bridge Enzyme, H174a Variant In Complex With (S)-Reticuline Length = 519 Back     alignment and structure
>pdb|3GSY|A Chain A, Structure Of Berberine Bridge Enzyme In Complex With Dehydroscoulerine Length = 519 Back     alignment and structure
>pdb|3FW9|A Chain A, Structure Of Berberine Bridge Enzyme In Complex With (S)-Scoulerine Length = 495 Back     alignment and structure
>pdb|3FW7|A Chain A, Structure Of Berberine Bridge Enzyme, H104a Variant Length = 498 Back     alignment and structure
>pdb|3FWA|A Chain A, Structure Of Berberine Bridge Enzyme, C166a Variant In Complex With (S)-Reticuline Length = 497 Back     alignment and structure
>pdb|3FW8|A Chain A, Structure Of Berberine Bridge Enzyme, C166a Variant Length = 495 Back     alignment and structure
>pdb|2IPI|A Chain A, Crystal Structure Of Aclacinomycin Oxidoreductase Length = 521 Back     alignment and structure
>pdb|3RJ8|A Chain A, Crystal Structure Of Carbohydrate Oxidase From Microdochium Nivale Length = 473 Back     alignment and structure
>pdb|2WDW|A Chain A, The Native Crystal Structure Of The Primary Hexose Oxidase ( Dbv29) In Antibiotic A40926 Biosynthesis Length = 523 Back     alignment and structure
>pdb|2BVF|A Chain A, Crystal Structure Of 6-Hydoxy-D-Nicotine Oxidase From Arthrobacter Nicotinovorans. Crystal Form 3 (P1) Length = 459 Back     alignment and structure
>pdb|3POP|A Chain A, The Crystal Structure Of Gilr, An Oxidoreductase That Catalyzes The Terminal Step Of Gilvocarcin Biosynthesis Length = 501 Back     alignment and structure
>pdb|2Y08|A Chain A, Structure Of The Substrate-Free Fad-Dependent Tirandamycin Oxidase Taml Length = 530 Back     alignment and structure
>pdb|1ZR6|A Chain A, The Crystal Structure Of An Acremonium Strictum Glucooligosaccharide Oxidase Reveals A Novel Flavinylation Length = 503 Back     alignment and structure
>pdb|3HSU|A Chain A, Functional Roles Of The 6-S-Cysteinyl, 8 Alpha-N1-Histidyl Fad In Glucooligosaccharide Oxidase From Acremonium Strictum Length = 503 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query518
3vte_A518 Tetrahydrocannabinolic acid synthase; BI-covalent 0.0
3fw9_A495 Reticuline oxidase; BI-covalent flavinylation, N-g 0.0
2ipi_A521 Aclacinomycin oxidoreductase (aknox); anthracyclin 1e-166
1zr6_A503 Glucooligosaccharide oxidase; alpha + beta, flavoe 1e-166
2wdx_A523 Putative hexose oxidase; oxidoreductase-antibiotic 1e-165
3pop_A501 GILR oxidase; FAD binding protein, gilvocarcin, gi 1e-164
3rja_A473 Carbohydrate oxidase; protein-substrate analogue c 1e-162
2y3s_A530 TAML; oxidoreductase; HET: FAD TIR; 1.67A {Strepto 1e-157
2bvf_A459 6-hydroxy-D-nicotine oxidase; autoflavinylation, e 1e-112
2exr_A524 Cytokinin dehydrogenase 7; AT5G21482.1, cytokinin 6e-51
1w1o_A534 Cytokinin dehydrogenase 1; flavin, oxidoreductase, 2e-39
2vfr_A422 Xylitol oxidase, alditol oxidase; FAD, sugar, poly 8e-17
4feh_A481 Oxidoreductase DPRE1; alpha+beta, decaprenylphosph 8e-17
3js8_A540 Cholesterol oxidase; cholsterol, organic solvent s 2e-12
2i0k_A561 Oxidoreductase; MIX alpha beta, covalent FAD, flav 2e-10
1e8g_A560 Vanillyl-alcohol oxidase; oxidoreductase, flavoenz 7e-08
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 2e-07
1wvf_A520 4-cresol dehydrogenase [hydroxylating] flavoprote 3e-06
>3vte_A Tetrahydrocannabinolic acid synthase; BI-covalent flavinylation, oxidoreductase; HET: NAG FAD; 2.75A {Cannabis sativa} Length = 518 Back     alignment and structure
 Score =  580 bits (1497), Expect = 0.0
 Identities = 263/518 (50%), Positives = 356/518 (68%), Gaps = 11/518 (2%)

Query: 2   ADAQENFLQCLLQNSDNSTTSISKVIYTQNNSSYSSILDFTIQNRRFLTAATPKPQVIVK 61
           A+ +ENFL+C  ++  N+  +  K++YTQ++  Y SIL+ TIQN RF++  TPKP VIV 
Sbjct: 1   ANPRENFLKCFSKHIPNNV-ANPKLVYTQHDQLYMSILNSTIQNLRFISDTTPKPLVIVT 59

Query: 62  PLQVSHIQSVIFCSQWHGMQVRVRSGGHDYEGLSYISHVPYVVIDLINLRSISIDVEKTT 121
           P   SHIQ+ I CS+  G+Q+R RSGGHD EG+SYIS VP+VV+DL N+ SI IDV   T
Sbjct: 60  PSNNSHIQATILCSKKVGLQIRTRSGGHDAEGMSYISQVPFVVVDLRNMHSIKIDVHSQT 119

Query: 122 AWIQAGATIGELYHKIADTSGTLGFPAGVCPSVGVGGHFSGGGYGILLRKYGLAADHVVD 181
           AW++AGAT+GE+Y+ I + +  L FP G CP+VGVGGHFSGGGYG L+R YGLAAD+++D
Sbjct: 120 AWVEAGATLGEVYYWINEKNENLSFPGGYCPTVGVGGHFSGGGYGALMRNYGLAADNIID 179

Query: 182 AHLVDVKGRLLDRKSMGEDLFWAIRGGGGASFGVIVAWKVELVTIPSTVTVCSSRRSLK- 240
           AHLV+V G++LDRKSMGEDLFWAIRGGGG +FG+I AWK++LV +PS  T+ S +++++ 
Sbjct: 180 AHLVNVDGKVLDRKSMGEDLFWAIRGGGGENFGIIAAWKIKLVAVPSKSTIFSVKKNMEI 239

Query: 241 RNLTRLVHRWQFVADKFDEDLITGVFLSSVNA---STGGNRTVIASFESVFLGGVDGVIP 297
             L +L ++WQ +A K+D+DL+      + N          TV   F S+F GGVD ++ 
Sbjct: 240 HGLVKLFNKWQNIAYKYDKDLVLMTHFITKNITDNHGKNKTTVHGYFSSIFHGGVDSLVD 299

Query: 298 LMQKSFPELGLVEKECTETSWVRAVLHHARF----PIEASLDVLLNRSPVTKRFYKAKSD 353
           LM KSFPELG+ + +C E SW+   + ++            ++LL+RS   K  +  K D
Sbjct: 300 LMNKSFPELGIKKTDCKEFSWIDTTIFYSGVVNFNTANFKKEILLDRSAGKKTAFSIKLD 359

Query: 354 YVREPMPEIAFEGIFELFNEKEGGNAEIMLVPYGGKMSEIPESAIPFPHRAGNIYKMSPV 413
           YV++P+PE A   I E   E++ G    +L PYGG M EI ESAIPFPHRAG +Y++   
Sbjct: 360 YVKKPIPETAMVKILEKLYEEDVGAGMYVLYPYGGIMEEISESAIPFPHRAGIMYELWYT 419

Query: 414 VYWYEEGSETAERHINWIRKLHSFLTPFVSKNPRASYINYRDIDIGANKIRGYTSYKQAS 473
             W  E  E  E+HINW+R +++F TP+VS+NPR +Y+NYRD+D+G        +Y QA 
Sbjct: 420 ASW--EKQEDNEKHINWVRSVYNFTTPYVSQNPRLAYLNYRDLDLGKTNHASPNNYTQAR 477

Query: 474 IWGRKYFRNNFDRLVVVKTMVDPHNFFRNEQSIPSLSS 511
           IWG KYF  NF+RLV VKT VDP+NFFRNEQSIP L  
Sbjct: 478 IWGEKYFGKNFNRLVKVKTKVDPNNFFRNEQSIPPLPP 515
>3fw9_A Reticuline oxidase; BI-covalent flavinylation, N-glycosylation, alakloid biosynt oxidoreductase, alkaloid metabolism; HET: FAD SLX NAG MAN; 1.49A {Eschscholzia californica} PDB: 3d2h_A* 3d2d_A* 3d2j_A* 3gsy_A* 3fw8_A* 3fw7_A* 3fwa_A* Length = 495 Back     alignment and structure
>2ipi_A Aclacinomycin oxidoreductase (aknox); anthracycline, flavoenzyme, twinning, MAD; HET: AKY FAD; 1.65A {Streptomyces galilaeus} Length = 521 Back     alignment and structure
>1zr6_A Glucooligosaccharide oxidase; alpha + beta, flavoenzyme, oxidoreductase; HET: NAG FAD; 1.55A {Acremonium strictum} PDB: 2axr_A* 3e0t_A* 3hsu_A* Length = 503 Back     alignment and structure
>2wdx_A Putative hexose oxidase; oxidoreductase-antibiotic complex, glycopeptide; HET: FAD GHP 3MY 3FG OMY BMA NAG N1L T55; 2.30A {Nonomuraea SP} PDB: 2wdw_A* Length = 523 Back     alignment and structure
>3pop_A GILR oxidase; FAD binding protein, gilvocarcin, gilvocarcin biosynthesis, covalently bound FAD, oxidoreductase; HET: FAD; 1.65A {Streptomyces griseoflavus} PDB: 3pqb_A* Length = 501 Back     alignment and structure
>3rja_A Carbohydrate oxidase; protein-substrate analogue complex, FAD binding domain, BERB berberine-like domain, glucooligosaccharide oxidase; HET: FAD NAG ABL TRS; 2.10A {Microdochium nivale} PDB: 3rj8_A* Length = 473 Back     alignment and structure
>2y3s_A TAML; oxidoreductase; HET: FAD TIR; 1.67A {Streptomyces SP} PDB: 2y3r_A* 2y08_A* 2y4g_A* Length = 530 Back     alignment and structure
>2bvf_A 6-hydroxy-D-nicotine oxidase; autoflavinylation, enantiomeric substrates, flavoenzymes, NI degradation; HET: FAD; 1.92A {Arthrobacter nicotinovorans} PDB: 2bvg_A* 2bvh_A* Length = 459 Back     alignment and structure
>2exr_A Cytokinin dehydrogenase 7; AT5G21482.1, cytokinin oxidase/dehydrogenase, CKX, structura genomics, protein structure initiative; HET: MSE FAD; 1.70A {Arabidopsis thaliana} PDB: 2q4w_A* Length = 524 Back     alignment and structure
>1w1o_A Cytokinin dehydrogenase 1; flavin, oxidoreductase, flavoprotein, FAD; HET: NAG FAD; 1.7A {Zea mays} SCOP: d.58.32.4 d.145.1.1 PDB: 1w1q_A* 1w1r_A* 1w1s_A* 3dq0_A* 2qkn_A* 3c0p_A* 3bw7_A* 2qpm_A* 3kjm_A* Length = 534 Back     alignment and structure
>2vfr_A Xylitol oxidase, alditol oxidase; FAD, sugar, polyol, flavin, flavoprotein, oxidoreductase; HET: FAD; 1.1A {Streptomyces coelicolor} PDB: 2vfs_A* 2vft_A* 2vfu_A* 2vfv_A* Length = 422 Back     alignment and structure
>4feh_A Oxidoreductase DPRE1; alpha+beta, decaprenylphosphoryl-beta-D-RIBO; HET: FAD; 2.04A {Mycobacterium tuberculosis} PDB: 4fdo_A* 4fdn_A* 4fdp_A* 4ff6_A* Length = 481 Back     alignment and structure
>3js8_A Cholesterol oxidase; cholsterol, organic solvent stability, oxygen channel, FAD, flavoprotein, oxidoreductase; HET: FAD SUC; 1.54A {Chromobacterium SP} Length = 540 Back     alignment and structure
>2i0k_A Oxidoreductase; MIX alpha beta, covalent FAD, flavoenzyme; HET: FAD; 1.60A {Brevibacterium sterolicum} SCOP: d.58.32.3 d.145.1.1 PDB: 1i19_A* Length = 561 Back     alignment and structure
>1e8g_A Vanillyl-alcohol oxidase; oxidoreductase, flavoenzyme, specificity; HET: FAD FCR; 2.1A {Penicillium simplicissimum} SCOP: d.58.32.1 d.145.1.1 PDB: 1e8f_A* 1e8h_A* 1qlt_A* 1qlu_A* 1vao_A* 1ahv_A* 1ahz_A* 1ahu_A* 2vao_A* 1w1j_A* 1dzn_A* 1w1l_A* 1e0y_A* 1w1k_A* 1w1m_A* Length = 560 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1wvf_A 4-cresol dehydrogenase [hydroxylating] flavoprote subunit; flavoprotein, electron-transfer, FAD, oxidoreductase; HET: FAD; 1.30A {Pseudomonas putida} SCOP: d.58.32.1 d.145.1.1 PDB: 1wve_A* 1dii_A* 1diq_A* Length = 520 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query518
3vte_A518 Tetrahydrocannabinolic acid synthase; BI-covalent 100.0
3fw9_A495 Reticuline oxidase; BI-covalent flavinylation, N-g 100.0
3tsh_A500 Pollen allergen PHL P 4; flavoprotein, BI-covalent 100.0
3rja_A473 Carbohydrate oxidase; protein-substrate analogue c 100.0
3pop_A501 GILR oxidase; FAD binding protein, gilvocarcin, gi 100.0
2y3s_A530 TAML; oxidoreductase; HET: FAD TIR; 1.67A {Strepto 100.0
2ipi_A521 Aclacinomycin oxidoreductase (aknox); anthracyclin 100.0
2wdx_A523 Putative hexose oxidase; oxidoreductase-antibiotic 100.0
1zr6_A503 Glucooligosaccharide oxidase; alpha + beta, flavoe 100.0
2bvf_A459 6-hydroxy-D-nicotine oxidase; autoflavinylation, e 100.0
1w1o_A534 Cytokinin dehydrogenase 1; flavin, oxidoreductase, 100.0
2exr_A524 Cytokinin dehydrogenase 7; AT5G21482.1, cytokinin 100.0
4bby_A658 Alkyldihydroxyacetonephosphate synthase, peroxiso; 100.0
1wvf_A520 4-cresol dehydrogenase [hydroxylating] flavoprote 100.0
4feh_A481 Oxidoreductase DPRE1; alpha+beta, decaprenylphosph 100.0
3pm9_A476 Putative oxidoreductase; putative D-2-hydroxygluta 100.0
2vfr_A422 Xylitol oxidase, alditol oxidase; FAD, sugar, poly 100.0
2uuu_A584 Alkyldihydroxyacetonephosphate synthase; transfera 100.0
2i0k_A561 Oxidoreductase; MIX alpha beta, covalent FAD, flav 99.97
1e8g_A560 Vanillyl-alcohol oxidase; oxidoreductase, flavoenz 99.97
3js8_A540 Cholesterol oxidase; cholsterol, organic solvent s 99.96
1f0x_A571 DLDH, D-lactate dehydrogenase; oxidoreductase; HET 99.96
3i99_A357 UDP-N-acetylenolpyruvoylglucosamine reductase; str 99.93
3tx1_A322 UDP-N-acetylenolpyruvoylglucosamine reductase; str 99.93
1hsk_A326 UDP-N-acetylenolpyruvoylglucosamine reductase; pep 99.91
1uxy_A340 MURB, uridine diphospho-N-acetylenolpyruvylglucosa 99.91
2gqt_A268 UDP-N-acetylenolpyruvylglucosamine reductase; pept 99.88
2yvs_A219 Glycolate oxidase subunit GLCE; oxidoreductase; 2. 99.81
1ffv_C287 CUTM, flavoprotein of carbon monoxide dehydrogenas 98.18
1n62_C288 Carbon monoxide dehydrogenase medium chain; CODH, 97.57
2w3s_A462 Xanthine dehydrogenase; XO, XDH, GOUT, iron, 2Fe-2 97.12
1t3q_C288 Quinoline 2-oxidoreductase medium subunit; QOR, mo 96.45
3nvz_B305 Xanthine dehydrogenase/oxidase; hydroxylase, homod 96.14
3hrd_C296 Nicotinate dehydrogenase FAD-subunit; selenium lig 93.15
1rm6_B324 4-hydroxybenzoyl-COA reductase beta subunit; xanth 89.08
>3vte_A Tetrahydrocannabinolic acid synthase; BI-covalent flavinylation, oxidoreductase; HET: NAG FAD; 2.75A {Cannabis sativa} Back     alignment and structure
Probab=100.00  E-value=3.3e-91  Score=739.97  Aligned_cols=507  Identities=52%  Similarity=0.941  Sum_probs=431.0

Q ss_pred             cchhhhHHHHhccCCCCCCCcccceEecCCCCchhhHHhhcccccccccCCCCCCcEEEecCCHHHHHHHHHHHHHcCCe
Q 042207            2 ADAQENFLQCLLQNSDNSTTSISKVIYTQNNSSYSSILDFTIQNRRFLTAATPKPQVIVKPLQVSHIQSVIFCSQWHGMQ   81 (518)
Q Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~p~~~~y~~~~~~~~~n~~~~~~~~~~p~~vv~p~~~~dv~~~v~~a~~~~~~   81 (518)
                      +..+++|.+||+..+..+ ..+++.|++|+|+.|++++.+|++|.||+.....+|.+||+|++++||+++|++|+++++|
T Consensus         1 ~~~~~~f~~c~~~~~~~~-~~~~~~v~~p~~~~y~~~~~~~~~n~rw~~~~~~~P~~vv~P~s~~dV~~~v~~a~~~~~~   79 (518)
T 3vte_A            1 ANPRENFLKCFSKHIPNN-VANPKLVYTQHDQLYMSILNSTIQNLRFISDTTPKPLVIVTPSNNSHIQATILCSKKVGLQ   79 (518)
T ss_dssp             CCHHHHHHHHHHHHCCC-----CCCEECTTSTTHHHHHHHTCCBGGGCSSSSCCCSEEECCCSHHHHHHHHHHHHHHTCE
T ss_pred             CChhHHHHHHHHhcCCcc-CCCCceEECCCCcchHHHHhhhhcccccccccCCCCCEEEEeCCHHHHHHHHHHHHHcCCc
Confidence            457899999999887644 3778999999999999998889999999999999999999999999999999999999999


Q ss_pred             EEEEeCCCCCCCCCcccCCCeEEEEccCCcceEEeCCCcEEEEeCCCcHHHHHHHHHhhCCCceecCCCCCCccchhhhc
Q 042207           82 VRVRSGGHDYEGLSYISHVPYVVIDLINLRSISIDVEKTTAWIQAGATIGELYHKIADTSGTLGFPAGVCPSVGVGGHFS  161 (518)
Q Consensus        82 ~~~~g~Gh~~~g~~~~~~~~~vvidl~~~~~i~~d~~~~~v~v~~G~~~~~l~~~l~~~g~~l~~~~g~~~~vgigG~~~  161 (518)
                      |++||||||+.|.+.....++|+|||++|++|++|++.++++||||+++++|+++|.++|++|.+++|.|++|||||+++
T Consensus        80 v~vrggGh~~~g~~~~~~~~gvvIdl~~l~~i~vd~~~~~v~V~aG~~l~~l~~~l~~~g~gl~~~~G~~~~vgvgG~~~  159 (518)
T 3vte_A           80 IRTRSGGHDAEGMSYISQVPFVVVDLRNMHSIKIDVHSQTAWVEAGATLGEVYYWINEKNENLSFPGGYCPTVGVGGHFS  159 (518)
T ss_dssp             EEEESSCCCTTCTTTCCSSSEEEEECTTCCCEEEETTTTEEEEETTCBHHHHHHHHHHHCTTEECCCCSCTTCBHHHHHH
T ss_pred             EEEECCCcCCCCCccCCCCCeEEEECCCCceeEEeCCCCEEEEeCCccHHHHHHHHHHhCCCceecCCCCCCeeeeeeeC
Confidence            99999999998877532224999999999999999999999999999999999999999878889999999999999999


Q ss_pred             CCCCCCccccCCccccceeEEEEEeeCCeEEeccCCCchhHHHhhccCCCCeEEEEEEEEEEEecCCeeEEEEEeechh-
Q 042207          162 GGGYGILLRKYGLAADHVVDAHLVDVKGRLLDRKSMGEDLFWAIRGGGGASFGVIVAWKVELVTIPSTVTVCSSRRSLK-  240 (518)
Q Consensus       162 ggg~g~~~~~~G~~~d~v~~~~vV~~~G~i~~~~~~~~dl~~a~rg~~~g~~Givt~~~~~l~~~~~~~~~~~~~~~~~-  240 (518)
                      |||+|+++++||+++|+|++++||++||++++...+++|||||+||||+|+|||||+++|||+|.|+.+..|.+.+.++ 
T Consensus       160 gGg~G~~s~~~G~~~D~V~~~evV~adG~iv~~~~~~~DLf~a~rGgg~g~fGIVt~~~l~l~p~p~~~~~~~~~~~~~~  239 (518)
T 3vte_A          160 GGGYGALMRNYGLAADNIIDAHLVNVDGKVLDRKSMGEDLFWAIRGGGGENFGIIAAWKIKLVAVPSKSTIFSVKKNMEI  239 (518)
T ss_dssp             TCCCCTTHHHHCCGGGGEEEEEEECTTCCEECHHHHCHHHHHHHTTSCGGGTCEEEEEEEECEECCSCEEEEEEEECCCH
T ss_pred             CCCCccccCCCCchhheEEEEEEEccCCeEEEeeccccchhhheecccCCCceEEEEEEEEEEeCCCeEEEEEEEecCCH
Confidence            9999999999999999999999999999999743468999999999867899999999999999999877788877654 


Q ss_pred             hhHHHHHHHHHHhhhccCCCceEEEEEeccccC---CCCCceEEEEEEEEEeCCccCchhhhhhhcCcCCCccccceecc
Q 042207          241 RNLTRLVHRWQFVADKFDEDLITGVFLSSVNAS---TGGNRTVIASFESVFLGGVDGVIPLMQKSFPELGLVEKECTETS  317 (518)
Q Consensus       241 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~---~~g~~~~~i~~~~~~~G~~~~~~~~l~~~~~~l~~~~~~~~~~s  317 (518)
                      +++.+++.+|+++++++|+++++.+.+...++.   +.+...+.+.+.++|+|+.+++.++|++.|++++....++.+++
T Consensus       240 ~~~~~~l~~~~~~~~~~p~~l~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~G~~~~~~~~l~~~~~~lg~~~~~~~~~~  319 (518)
T 3vte_A          240 HGLVKLFNKWQNIAYKYDKDLVLMTHFITKNITDNHGKNKTTVHGYFSSIFHGGVDSLVDLMNKSFPELGIKKTDCKEFS  319 (518)
T ss_dssp             HHHHHHHHHHHHHGGGSCTTEEEEEEEEEESCC-------CEEEEEEEEEEESCHHHHHHHHHHHCGGGCCCGGGEEEEC
T ss_pred             HHHHHHHHHHHHHHHcCCHhHeEEEEEcccCCCCCCCcCCCceEEEEEEEEeCCHHHHhhhhhhhhhhcCCCccceeecc
Confidence            557889999999999999999998888753221   11223456788899999999998888887777877667789999


Q ss_pred             HHHHHHhhhcCCCC-cc---hhhhccCCCcccccceecccCccCCCCHHHHHHHHHHHhhCCCCceEEEEEecCCccCCC
Q 042207          318 WVRAVLHHARFPIE-AS---LDVLLNRSPVTKRFYKAKSDYVREPMPEIAFEGIFELFNEKEGGNAEIMLVPYGGKMSEI  393 (518)
Q Consensus       318 ~~~~~~~~~~~~~~-~~---~~~~~~~~~~~~~~~~~~s~~~~~~l~~~~i~~l~~~~~~~~~~~s~i~~~~~GGav~~v  393 (518)
                      |++.+.+++++..+ .+   ++.+.++......|+|.|+.|+.+++++++++.+++.+.+.+.+.+.+.++++||+++++
T Consensus       320 w~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~k~ks~~~~~~l~~~~i~~l~~~~~~~~~~~~~v~~~~~GGa~~~v  399 (518)
T 3vte_A          320 WIDTTIFYSGVVNFNTANFKKEILLDRSAGKKTAFSIKLDYVKKPIPETAMVKILEKLYEEDVGAGMYVLYPYGGIMEEI  399 (518)
T ss_dssp             HHHHHHHTSSSCCC-----CGGGGGCTTCSCCBEEEEEEEEESSCCCHHHHHHHHHGGGGSCTTTEEEEEEECCGGGGTS
T ss_pred             hhhhhhhhhcCCccCCccchhhhhccCCcCcccceeeechhcccCCCHHHHHHHHHHHHhCCCCCeEEEEeecCccccCC
Confidence            99998887755433 22   344444433334567889999988899999999999887644345789999999999999


Q ss_pred             CCCCCCcccccCCeeEEEEEEEeCCCCchhHHHHHHHHHHHHhhhcccccCCCCccccCCCCcccc-ccccCCccccccc
Q 042207          394 PESAIPFPHRAGNIYKMSPVVYWYEEGSETAERHINWIRKLHSFLTPFVSKNPRASYINYRDIDIG-ANKIRGYTSYKQA  472 (518)
Q Consensus       394 ~~~~tAf~~Rd~~~~~~~~~~~W~d~~~~~~~~~~~wi~~~~~~l~p~~~~~~~~~Y~Ny~d~~~~-~~~~~~~~~~~~~  472 (518)
                      ++++|||+||++.+|.+++.+.|.++  +.++++.+|++++++.+.|+.++.++++|+||+|.+++ .+.. ...+++.+
T Consensus       400 ~~~~TAf~hR~~~~~~~~~~~~w~~~--~~~~~~~~w~~~~~~~~~p~~~~~~~g~YvNy~D~dl~~~~~~-~~~~~~~~  476 (518)
T 3vte_A          400 SESAIPFPHRAGIMYELWYTASWEKQ--EDNEKHINWVRSVYNFTTPYVSQNPRLAYLNYRDLDLGKTNHA-SPNNYTQA  476 (518)
T ss_dssp             CTTSSSCCCCTTCCEEEEEEEEECCT--TTHHHHHHHHHHHHHHTGGGSCCTTCCCCTTSCCGGGCCCCTT-SCCCHHHH
T ss_pred             CCCCCcccccCcceEEEEEEEecCCc--chhHHHHHHHHHHHHHhccccCCCCccccccCCCccccccccc-cccchhhh
Confidence            99999999999558999999999775  56678999999999999998655557899999998876 2100 12334455


Q ss_pred             chhhhhhhcccHHHHHHHHhhcCCCCCCcCCCCCCCcccc
Q 042207          473 SIWGRKYFRNNFDRLVVVKTMVDPHNFFRNEQSIPSLSSW  512 (518)
Q Consensus       473 ~~~~~~y~G~n~~RL~~IK~kYDP~~vF~~~~~i~~~~~~  512 (518)
                      +.|+++|||+||+||++||+||||+|||+++|||||.++|
T Consensus       477 ~~w~~~Yyg~N~~RL~~vK~~yDP~n~F~~~QsI~p~~~~  516 (518)
T 3vte_A          477 RIWGEKYFGKNFNRLVKVKTKVDPNNFFRNEQSIPPLPPH  516 (518)
T ss_dssp             HHHHHHHSSTHHHHHHHHHHHHCTTCCSCCTTCCCCCCTT
T ss_pred             hhHHHHHhHhHHHHHHHHHhhcCchhcccCCCCCCCCCCC
Confidence            6799999999999999999999999999999999999885
>3fw9_A Reticuline oxidase; BI-covalent flavinylation, N-glycosylation, alakloid biosynt oxidoreductase, alkaloid metabolism; HET: FAD SLX NAG MAN; 1.49A {Eschscholzia californica} PDB: 3d2h_A* 3d2d_A* 3d2j_A* 3gsy_A* 4ec3_A* 3fw8_A* 3fw7_A* 3fwa_A* Back     alignment and structure
>3tsh_A Pollen allergen PHL P 4; flavoprotein, BI-covalent flavinylation, oxidoreductase, Glu dehydrogenase, N-glycosylation, allergy, dehydrogenase; HET: FDA; 1.90A {Phleum pratense} PDB: 3tsj_A* Back     alignment and structure
>3rja_A Carbohydrate oxidase; protein-substrate analogue complex, FAD binding domain, BERB berberine-like domain, glucooligosaccharide oxidase; HET: FAD NAG ABL TRS; 2.10A {Microdochium nivale} PDB: 3rj8_A* Back     alignment and structure
>3pop_A GILR oxidase; FAD binding protein, gilvocarcin, gilvocarcin biosynthesis, covalently bound FAD, oxidoreductase; HET: FAD; 1.65A {Streptomyces griseoflavus} PDB: 3pqb_A* Back     alignment and structure
>2y3s_A TAML; oxidoreductase; HET: FAD TIR; 1.67A {Streptomyces SP} PDB: 2y3r_A* 2y08_A* 2y4g_A* Back     alignment and structure
>2ipi_A Aclacinomycin oxidoreductase (aknox); anthracycline, flavoenzyme, twinning, MAD; HET: AKY FAD; 1.65A {Streptomyces galilaeus} Back     alignment and structure
>2wdx_A Putative hexose oxidase; oxidoreductase-antibiotic complex, glycopeptide; HET: FAD GHP 3MY 3FG OMY BMA NAG N1L T55; 2.30A {Nonomuraea SP} PDB: 2wdw_A* Back     alignment and structure
>1zr6_A Glucooligosaccharide oxidase; alpha + beta, flavoenzyme, oxidoreductase; HET: NAG FAD; 1.55A {Acremonium strictum} PDB: 2axr_A* 3e0t_A* 3hsu_A* Back     alignment and structure
>2bvf_A 6-hydroxy-D-nicotine oxidase; autoflavinylation, enantiomeric substrates, flavoenzymes, NI degradation; HET: FAD; 1.92A {Arthrobacter nicotinovorans} PDB: 2bvg_A* 2bvh_A* Back     alignment and structure
>1w1o_A Cytokinin dehydrogenase 1; flavin, oxidoreductase, flavoprotein, FAD; HET: NAG FAD; 1.7A {Zea mays} SCOP: d.58.32.4 d.145.1.1 PDB: 1w1q_A* 1w1r_A* 1w1s_A* 3dq0_A* 2qkn_A* 3c0p_A* 3bw7_A* 2qpm_A* 3kjm_A* Back     alignment and structure
>2exr_A Cytokinin dehydrogenase 7; AT5G21482.1, cytokinin oxidase/dehydrogenase, CKX, structura genomics, protein structure initiative; HET: MSE FAD; 1.70A {Arabidopsis thaliana} PDB: 2q4w_A* Back     alignment and structure
>4bby_A Alkyldihydroxyacetonephosphate synthase, peroxiso; transferase, plasmalogen, flavin, peroxisome; HET: FAD; 1.90A {Cavia porcellus} PDB: 4bc9_A* 4bca_A* 4bc7_A* Back     alignment and structure
>1wvf_A 4-cresol dehydrogenase [hydroxylating] flavoprote subunit; flavoprotein, electron-transfer, FAD, oxidoreductase; HET: FAD; 1.30A {Pseudomonas putida} SCOP: d.58.32.1 d.145.1.1 PDB: 1wve_A* 1dii_A* 1diq_A* Back     alignment and structure
>4feh_A Oxidoreductase DPRE1; alpha+beta, decaprenylphosphoryl-beta-D-RIBO; HET: FAD; 2.04A {Mycobacterium tuberculosis} PDB: 4fdo_A* 4fdn_A* 4fdp_A* 4ff6_A* 4aut_A* 4f4q_A* 4g3t_A 4g3u_A Back     alignment and structure
>3pm9_A Putative oxidoreductase; putative D-2-hydroxyglutarate dehydrogenase, putative D-LACT dehydrogenase; HET: FAD; 2.57A {Rhodopseudomonas palustris} Back     alignment and structure
>2vfr_A Xylitol oxidase, alditol oxidase; FAD, sugar, polyol, flavin, flavoprotein, oxidoreductase; HET: FAD; 1.1A {Streptomyces coelicolor} PDB: 2vfs_A* 2vft_A* 2vfu_A* 2vfv_A* Back     alignment and structure
>2uuu_A Alkyldihydroxyacetonephosphate synthase; transferase, lavoprotein, lipid synthesis, peroxisomal disor; HET: FAD PL3; 1.95A {Dictyostelium discoideum} PDB: 2uuv_A* Back     alignment and structure
>2i0k_A Oxidoreductase; MIX alpha beta, covalent FAD, flavoenzyme; HET: FAD; 1.60A {Brevibacterium sterolicum} SCOP: d.58.32.3 d.145.1.1 PDB: 1i19_A* Back     alignment and structure
>1e8g_A Vanillyl-alcohol oxidase; oxidoreductase, flavoenzyme, specificity; HET: FAD FCR; 2.1A {Penicillium simplicissimum} SCOP: d.58.32.1 d.145.1.1 PDB: 1e8f_A* 1e8h_A* 1qlt_A* 1qlu_A* 1vao_A* 1ahv_A* 1ahz_A* 1ahu_A* 2vao_A* 1w1j_A* 1dzn_A* 1w1l_A* 1e0y_A* 1w1k_A* 1w1m_A* Back     alignment and structure
>3js8_A Cholesterol oxidase; cholsterol, organic solvent stability, oxygen channel, FAD, flavoprotein, oxidoreductase; HET: FAD SUC; 1.54A {Chromobacterium SP} Back     alignment and structure
>1f0x_A DLDH, D-lactate dehydrogenase; oxidoreductase; HET: FAD; 1.90A {Escherichia coli} SCOP: d.58.32.2 d.145.1.1 Back     alignment and structure
>3i99_A UDP-N-acetylenolpyruvoylglucosamine reductase; structural genomics, center for structural of infectious diseases, csgid; HET: FAD; 2.20A {Vibrio cholerae} Back     alignment and structure
>3tx1_A UDP-N-acetylenolpyruvoylglucosamine reductase; structural genomics, center for structural genomics of infec diseases, csgid; HET: FAD; 2.69A {Listeria monocytogenes} Back     alignment and structure
>1hsk_A UDP-N-acetylenolpyruvoylglucosamine reductase; peptidoglycan synthesis, cell WALL, cell division, oxidoreductase, NADP, flavoprotein, FAD; HET: FAD; 2.30A {Staphylococcus aureus} SCOP: d.145.1.2 d.146.1.1 Back     alignment and structure
>1uxy_A MURB, uridine diphospho-N-acetylenolpyruvylglucosamine reductase; peptidoglycan synthesis, cell WALL, cell division, oxidoreductase, NADP; HET: FAD EPU; 1.80A {Escherichia coli} SCOP: d.145.1.2 d.146.1.1 PDB: 1mbb_A* 1mbt_A* 2q85_A* 2mbr_A* Back     alignment and structure
>2gqt_A UDP-N-acetylenolpyruvylglucosamine reductase; peptidoglycan biosynthesis, enolpyruvyl-UDP-N- acetylglucosamine, flavin adenine dinucleotide; HET: FAD; 1.30A {Thermus caldophilus} PDB: 2gqu_A* Back     alignment and structure
>2yvs_A Glycolate oxidase subunit GLCE; oxidoreductase; 2.00A {Thermus thermophilus} Back     alignment and structure
>1ffv_C CUTM, flavoprotein of carbon monoxide dehydrogenase; hydrolase; HET: ARO PCD FAD; 2.25A {Hydrogenophaga pseudoflava} SCOP: d.87.2.1 d.145.1.3 PDB: 1ffu_C* Back     alignment and structure
>1n62_C Carbon monoxide dehydrogenase medium chain; CODH, molybdenum, molybdopterin, oxidoreductase; HET: CUB MCN FAD; 1.09A {Oligotropha carboxidovorans} SCOP: d.87.2.1 d.145.1.3 PDB: 1n5w_C* 1n61_C* 1n60_C* 1n63_C* 1zxi_C* Back     alignment and structure
>2w3s_A Xanthine dehydrogenase; XO, XDH, GOUT, iron, 2Fe-2S, iron-sulfur, oxidoreductase, purine metabolism, molybdenum cofactor, hypoxanthine; HET: MPN FAD XAN; 2.60A {Rhodobacter capsulatus} PDB: 2w3r_A* 2w54_A* 2w55_A* 1jro_A* 1jrp_A* Back     alignment and structure
>1t3q_C Quinoline 2-oxidoreductase medium subunit; QOR, molybdenum, MCD; HET: FAD MCN; 1.80A {Pseudomonas putida} SCOP: d.87.2.1 d.145.1.3 Back     alignment and structure
>3nvz_B Xanthine dehydrogenase/oxidase; hydroxylase, homodimer, xanthine oxidase, indole-3-aldehyde, oxidoreductase; HET: FAD MTE I3A; 1.60A {Bos taurus} PDB: 3eub_B* 3etr_B* 3ns1_B* 3nrz_B* 3rca_B* 3sr6_B* 3nvw_B* 3nvv_B* 3nvy_B* Back     alignment and structure
>3hrd_C Nicotinate dehydrogenase FAD-subunit; selenium ligand, iron, iron-sulfur, metal-binding, oxidoreductase; HET: MCN FAD; 2.20A {Eubacterium barkeri} Back     alignment and structure
>1rm6_B 4-hydroxybenzoyl-COA reductase beta subunit; xanthine oxidase family, dimer heterotrimers, oxidoreductase; HET: PCD FAD SF4 EPE; 1.60A {Thauera aromatica} SCOP: d.87.2.1 d.145.1.3 PDB: 1sb3_B* Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 518
d1w1oa2206 d.145.1.1 (A:40-245) Cytokinin dehydrogenase 1 {Ma 1e-15
d2i0ka2216 d.145.1.1 (A:58-273) Cholesterol oxidase {Brevibac 3e-11
>d1w1oa2 d.145.1.1 (A:40-245) Cytokinin dehydrogenase 1 {Maize (Zea mays) [TaxId: 4577]} Length = 206 Back     information, alignment and structure

class: Alpha and beta proteins (a+b)
fold: FAD-binding/transporter-associated domain-like
superfamily: FAD-binding/transporter-associated domain-like
family: FAD-linked oxidases, N-terminal domain
domain: Cytokinin dehydrogenase 1
species: Maize (Zea mays) [TaxId: 4577]

 Score = 73.8 bits (180), Expect = 1e-15
 Identities = 28/178 (15%), Positives = 60/178 (33%), Gaps = 10/178 (5%)

Query: 55  KPQVIVKPLQVSHIQSVI-FCSQ--WHGMQVRVRSGGHDYEGLSYISHVPYVVIDLIN-- 109
            P  ++ P     + +++   +        +  R  GH   G ++      V +  +   
Sbjct: 29  LPAAVLYPSSTGDLVALLSAANSTPGWPYTIAFRGRGHSLMGQAFAPGGVVVNMASLGDA 88

Query: 110 --LRSISIDVEKTTAWIQAGATIGELYHKIADTSGTLGFPAGVCPSVGVGGHFSGGGYGI 167
                I++  +             ++                    + VGG  S  G   
Sbjct: 89  AAPPRINVSADGRYVDAGGEQVWIDVLRASLARGVAPRSW-TDYLYLTVGGTLSNAGISG 147

Query: 168 LLRKYGLAADHVVDAHLVDVKGRLLD-RKSMGEDLFWAIRGGGGASFGVIVAWKVELV 224
              ++G    +V++  ++   G ++   K +  DLF A+ GG G  FGVI   ++ + 
Sbjct: 148 QAFRHGPQISNVLEMDVITGHGEMVTCSKQLNADLFDAVLGGLG-QFGVITRARIAVE 204
>d2i0ka2 d.145.1.1 (A:58-273) Cholesterol oxidase {Brevibacterium sterolicum [TaxId: 1702]} Length = 216 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query518
d1w1oa2206 Cytokinin dehydrogenase 1 {Maize (Zea mays) [TaxId 100.0
d1wvfa2236 Flavoprotein subunit of p-cresol methylhydroxylase 100.0
d2i0ka2216 Cholesterol oxidase {Brevibacterium sterolicum [Ta 99.97
d1e8ga2268 Vanillyl-alcohol oxidase {Fungus (Penicillium simp 99.97
d1hska1194 Uridine diphospho-N-Acetylenolpyruvylglucosamine r 99.87
d1uxya1198 Uridine diphospho-N-Acetylenolpyruvylglucosamine r 99.87
d1f0xa2265 D-lactate dehydrogenase {Escherichia coli [TaxId: 99.85
d1ffvc2177 Carbon monoxide (CO) dehydrogenase flavoprotein, N 95.52
d1t3qc2176 Quinoline 2-oxidoreductase medium subunit QorM {Ps 94.05
d1v97a6223 Xanthine oxidase, domain 3 (?) {Cow (Bos taurus) [ 93.57
d1jroa4167 Xanthine dehydrogenase chain A, domain 3 {Rhodobac 93.35
d1n62c2177 Carbon monoxide (CO) dehydrogenase flavoprotein, N 93.25
d1rm6b2216 4-hydroxybenzoyl-CoA reductase beta subunit HrcB, 92.91
d1f0xa1294 D-lactate dehydrogenase {Escherichia coli [TaxId: 83.19
>d1w1oa2 d.145.1.1 (A:40-245) Cytokinin dehydrogenase 1 {Maize (Zea mays) [TaxId: 4577]} Back     information, alignment and structure
class: Alpha and beta proteins (a+b)
fold: FAD-binding/transporter-associated domain-like
superfamily: FAD-binding/transporter-associated domain-like
family: FAD-linked oxidases, N-terminal domain
domain: Cytokinin dehydrogenase 1
species: Maize (Zea mays) [TaxId: 4577]

Probab=100.00  E-value=2.9e-38  Score=295.53  Aligned_cols=176  Identities=16%  Similarity=0.247  Sum_probs=160.2

Q ss_pred             cccccCCCCCCcEEEecCCHHHHHHHHHHHHHc---CCeEEEEeCCCCCCCCCcccCCCeEEEEccCCcce------EEe
Q 042207           46 RRFLTAATPKPQVIVKPLQVSHIQSVIFCSQWH---GMQVRVRSGGHDYEGLSYISHVPYVVIDLINLRSI------SID  116 (518)
Q Consensus        46 ~~~~~~~~~~p~~vv~p~~~~dv~~~v~~a~~~---~~~~~~~g~Gh~~~g~~~~~~~~~vvidl~~~~~i------~~d  116 (518)
                      ..|+......|.+|++|+|++||+++|++|+++   ++||++||+||++.|.+...+  +|+|||++||+|      ++|
T Consensus        20 ~d~~~~~~~~P~~Vv~P~s~~ev~~iv~~a~~~~~~~~~v~~rggGhs~~g~s~~~~--~ividl~~l~~i~~~~~~~id   97 (206)
T d1w1oa2          20 TDFGNITSALPAAVLYPSSTGDLVALLSAANSTPGWPYTIAFRGRGHSLMGQAFAPG--GVVVNMASLGDAAAPPRINVS   97 (206)
T ss_dssp             CCTTCSCCCCCSEEECCSSHHHHHHHHHHHHHCTTCCCCEEEESSCCCSSSTTCCTT--SEEEEGGGGGCSSSSCSEEEC
T ss_pred             ECcccCcccCCCEEEEcCCHHHHHHHHHHHHhCCCCCeEEEEECCCCCcccCcccCC--CEeeeccccceeeeceeEEEe
Confidence            457766788999999999999999999999997   699999999999998887665  899999999985      699


Q ss_pred             CCCcEEEEeCCCcHHHHHHHHHhhCCCceec-CCCCCCccchhhhcCCCCCCccccCCccccceeEEEEEeeCCeEEe-c
Q 042207          117 VEKTTAWIQAGATIGELYHKIADTSGTLGFP-AGVCPSVGVGGHFSGGGYGILLRKYGLAADHVVDAHLVDVKGRLLD-R  194 (518)
Q Consensus       117 ~~~~~v~v~~G~~~~~l~~~l~~~g~~l~~~-~g~~~~vgigG~~~ggg~g~~~~~~G~~~d~v~~~~vV~~~G~i~~-~  194 (518)
                      ++..+++||||+++.+|.++|.++|+  .++ .+....++|||++++||+|..+.+||+.+|+|+++|+|++||++++ +
T Consensus        98 ~~~~~v~v~aG~~~~~l~~~l~~~Gl--~~~~~~~~~~~tvGG~i~~~g~g~~s~~~G~~~d~v~~~evV~~~G~~~~~s  175 (206)
T d1w1oa2          98 ADGRYVDAGGEQVWIDVLRASLARGV--APRSWTDYLYLTVGGTLSNAGISGQAFRHGPQISNVLEMDVITGHGEMVTCS  175 (206)
T ss_dssp             TTSSEEEEETTCBHHHHHHHHHTTTE--EESCCCSSCCSBHHHHHTTCCCSTTHHHHCCGGGSEEEEEEEETTSCEEEEE
T ss_pred             cCCCEEEEEcceehhhhhhhhhcccc--ccccCCccCceEEeeeeccccceeccccccceeeeeeEEEEEcCCCcEEEEC
Confidence            99999999999999999999999874  433 4556678999999999999999999999999999999999999998 7


Q ss_pred             cCCCchhHHHhhccCCCCeEEEEEEEEEEEec
Q 042207          195 KSMGEDLFWAIRGGGGASFGVIVAWKVELVTI  226 (518)
Q Consensus       195 ~~~~~dl~~a~rg~~~g~~Givt~~~~~l~~~  226 (518)
                      +.+++||||+++|| +|+|||||++|||++|+
T Consensus       176 ~~~~~dl~~a~~g~-~G~~Giit~~tl~l~PA  206 (206)
T d1w1oa2         176 KQLNADLFDAVLGG-LGQFGVITRARIAVEPA  206 (206)
T ss_dssp             SSSSHHHHHHHTTC-TTCSEEEEEEEEEEEEC
T ss_pred             CCCCHHHHHHHhhC-CCccEeEEEEEEEEEcC
Confidence            78899999999998 58999999999999985
>d1wvfa2 d.145.1.1 (A:7-242) Flavoprotein subunit of p-cresol methylhydroxylase {Pseudomonas putida [TaxId: 303]} Back     information, alignment and structure
>d2i0ka2 d.145.1.1 (A:58-273) Cholesterol oxidase {Brevibacterium sterolicum [TaxId: 1702]} Back     information, alignment and structure
>d1e8ga2 d.145.1.1 (A:6-273) Vanillyl-alcohol oxidase {Fungus (Penicillium simplicissimum) [TaxId: 69488]} Back     information, alignment and structure
>d1hska1 d.145.1.2 (A:15-208) Uridine diphospho-N-Acetylenolpyruvylglucosamine reductase (MurB), N-terminal domain {Staphylococcus aureus [TaxId: 1280]} Back     information, alignment and structure
>d1uxya1 d.145.1.2 (A:3-200) Uridine diphospho-N-Acetylenolpyruvylglucosamine reductase (MurB), N-terminal domain {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1f0xa2 d.145.1.1 (A:9-273) D-lactate dehydrogenase {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1ffvc2 d.145.1.3 (C:1-177) Carbon monoxide (CO) dehydrogenase flavoprotein, N-terminal domain {Hydrogenophaga pseudoflava [TaxId: 47421]} Back     information, alignment and structure
>d1t3qc2 d.145.1.3 (C:1-176) Quinoline 2-oxidoreductase medium subunit QorM {Pseudomonas putida [TaxId: 303]} Back     information, alignment and structure
>d1v97a6 d.145.1.3 (A:192-414) Xanthine oxidase, domain 3 (?) {Cow (Bos taurus) [TaxId: 9913]} Back     information, alignment and structure
>d1jroa4 d.145.1.3 (A:179-345) Xanthine dehydrogenase chain A, domain 3 {Rhodobacter capsulatus [TaxId: 1061]} Back     information, alignment and structure
>d1n62c2 d.145.1.3 (C:1-177) Carbon monoxide (CO) dehydrogenase flavoprotein, N-terminal domain {Oligotropha carboxidovorans, formerly Pseudomonas carboxydovorans [TaxId: 40137]} Back     information, alignment and structure
>d1rm6b2 d.145.1.3 (B:1-216) 4-hydroxybenzoyl-CoA reductase beta subunit HrcB, N-terminal domain {Thauera aromatica [TaxId: 59405]} Back     information, alignment and structure
>d1f0xa1 d.58.32.2 (A:274-567) D-lactate dehydrogenase {Escherichia coli [TaxId: 562]} Back     information, alignment and structure